biorXiv Published Article Link

Sarah Mubareka;Ragnar Jonsson;Francesca Rinaldi;Giulia Fiorese;Jesús San-Miguel-Ayanz;Ola Sallnäs;Claudia Baranzelli;Roberto Pilli;Carlo Lavalle;Alban Kitous;

10.1101/011932 — — Posted on 2014-11-29

9 Division of Labor in Hand Usage Is Associated with Higher Hand Performance in Free-Ranging Bonnet Macaques, Macaca radiata

Madhur Mangalam;Nisarg Desai;Mewa Singh;

10.1101/011916 — Animal Behavior and Cognition — Posted on 2014-11-29

10 Division of Labor: A Democratic Approach to Understanding Manual Asymmetries in Non-Human Primates

Madhur Mangalam;Nisarg Desai;Mewa Singh;

10.1101/011908 — Animal Behavior and Cognition — Posted on 2014-11-29

11 Generalised empirical Bayesian methods for discovery of differential data in high-throughput biology

Thomas J Hardcastle;

10.1101/011890 — Bioinformatics — Posted on 2014-11-28

12 Reveel: large-scale population genotyping using low-coverage sequencing data

Lin Huang;Bo Wang;Ruitang Chen;Sivan Bercovici;Serafim Batzoglou;

10.1101/011882 — Bioinformatics — Posted on 2014-11-28

13 Reveel: large-scale population genotyping using low-coverage sequencing data

Lin Huang;Bo Wang;Ruitang Chen;Sivan Bercovici;Serafim Batzoglou;

10.1101/011882 — Bioinformatics — Posted on 2014-11-27

14 Demographic inference using genetic data from a single individual: separating population size variation from population structure

Olivier Mazet;Willy Rodríguez;Lounès Chikhi;

10.1101/011866 — Evolutionary Biology — Posted on 2014-11-27

15 On the scope and limitations of baker’s yeast as a model organism for studying human tissue-specific pathways

Shahin Mohammadi;Baharak Saberidokht;Shankar Subramaniam;Ananth Grama;

10.1101/011858 — Systems Biology — Posted on 2014-11-26

16 The rate and molecular spectrum of spontaneous mutations in the GC-rich multi-chromosome genome of Burkholderia cenocepacia

Marcus M Dillon;Way Sung;Michael Lynch;Vaughn S Cooper;

10.1101/011841 — Evolutionary Biology — Posted on 2014-11-27

17 SubClonal Hierarchy Inference from Somatic Mutations: automatic reconstruction of cancer evolutionary trees from multi-region next generation sequencing

Noushin Niknafs;Violeta Beleva Guthrie;Daniel Q Naiman;Rachel Karchin;

10.1101/011833 — Bioinformatics — Posted on 2014-11-26

18 Recent Y chromosome divergence despite ancient origin of dioecy in poplars (Populus)

Armando Geraldes;Charles A Hefer;Arnaud Capron;Natalia Kolosova;Felix Martinez-Nuñez;Raju Y Soolanayakanahally;Brian Stanton;Robert D Guy;Shawn D Mansfield;Carl J Douglas;Quentin C B Cronk;

10.1101/011817 — Evolutionary Biology — Posted on 2014-11-26

19 Visualizing spatial population structure with estimated effective migration surfaces

Desislava Petkova;John Novembre;Matthew Stephens;

10.1101/011809 — Genetics — Posted on 2014-11-26

20 FlexAID: Revisiting docking on non native-complex structures

Francis Gaudreault;Rafael Najmanovich;

10.1101/011791 — Bioinformatics — Posted on 2014-11-26

21 Social communication in mice – Are there optimal cage conditions?

Allain-Thibeault FERHAT;Anne-Marie Le Sourfd;Fabrice de Chamont;Jean-Christophe Olivo- Marin;Thomas Bourgeron;Elodie Ey;

10.1101/011783 — Animal Behavior and Cognition — Posted on 2014-11-26

22 Spider web DNA: a new spin on noninvasive genetics of predator and prey

Charles Cong Yang Xu;Ivy J Yen;Dean Bowman;Cameron R. Turner;

10.1101/011775 — Genetics — Posted on 2014-11-25

23 Mixture models reveal multiple positional bias types in RNA-Seq data and lead to accurate transcript concentration estimates

Andreas Tuerk;Gregor Wiktorin;Serhat Güler;

10.1101/011767 — Bioinformatics — Posted on 2014-11-24

24 Genetic landscape of populations along the Silk Road: admixture and migration patterns

Massimo Mezzavilla;Diego Vozzi;Nicola Pirastu;Giorgia Girotto;Pio D'Adamo;Paolo Gasparini;Vincenza Colonna;

10.1101/011759 — Genomics — Posted on 2014-11-24

25 Flies Infected by Zombie Fungi in an Urban Fragment

B. C. Barbosa;T. T. Maciel;

10.1101/011742 — — Posted on 2014-11-26

26 Flies Infected by Zombie Fungi in an Urban Fragment

B. C. Barbosa;T. T. Maciel;

10.1101/011742 — — Posted on 2014-11-25

27 CLASS: Accurate and Efficient Splice Variant Annotation from RNA-seq Reads

Li Song;Sarven Sabunciyan;Liliana D Florea;

10.1101/011718 — Bioinformatics — Posted on 2014-11-20

28 Cell-Line Annotation on Europe PubMed Central

Jee-Hyub Kim;

10.1101/011700 — Bioinformatics — Posted on 2014-11-24

29 Cell-Line Annotation on Europe PubMed Central

Jee-Hyub Kim;

10.1101/011700 — Bioinformatics — Posted on 2014-11-20

30 Tissue-specific evolution of protein coding genes in human and mouse

Nadezda Kryuchkova-Mostacci;Marc Robinson-Rechavi;

10.1101/011692 — Evolutionary Biology — Posted on 2014-11-21

31 Adaptation to larval crowding in Drosophila ananassae and Drosophila nasuta nasuta: increased larval competitive ability without increased larval feeding rate

Archana Nagarajan;Sharmila Bharathi Natarajan;Mohan Jayaram;Ananda Thammanna;Sudarshan Chari;Joy Bose;Shreyas V. Jois;Amitabh Joshi;

10.1101/011684 — Evolutionary Biology — Posted on 2014-11-20

32 A systematic simulation of the effect of salicylic acid on sphingolipid metabolism

Chao Shi;Jian Yin;Zhe Liu;Jian-Xin Wu;Qi Zhao;Jian Ren;Nan Yao;

10.1101/011676 — Plant Biology — Posted on 2014-11-24

33 A systematic simulation of the effect of salicylic acid on sphingolipid metabolism

Chao Shi;Jian Yin;Zhe Liu;Jian-Xin Wu;Qi Zhao;Jian Ren;Nan Yao;

10.1101/011676 — Plant Biology — Posted on 2014-11-20

34 A novel computational approach for genome-wide prediction of small RNAs in bacteria

Lei Li;Hoi Shan Kwan;

10.1101/011668 — Bioinformatics — Posted on 2014-11-19

35 FusionCatcher - a tool for finding somatic fusion genes in paired-end RNA-sequencing data

Daniel Nicorici;Mihaela Satalan;Henrik Edgren;Sara Kangaspeska;Astrid Murumagi;Olli Kallioniemi;Sami Virtanen;Olavi Kilkku;

10.1101/011650 — Bioinformatics — Posted on 2014-11-19

36 Distinct regulatory modules identified in the promoters of wheat Glu-1 genes suggest different regulatory mechanisms

Szabolcs Makai;Laszlo Tamas;Angela Juhasz;

10.1101/011635 — Plant Biology — Posted on 2014-11-19

37 Strong selective sweeps on the X chromosome in the human-chimpanzee ancestor explain its low divergence

Julien Y Dutheil;Kasper Munch;Kiwoong Nam;Thomas Mailund;Mikkel Schierup;

10.1101/011601 — Evolutionary Biology — Posted on 2014-11-21

38 Strong selective sweeps on the X chromosome in the human-chimpanzee ancestor explain its low divergence

Julien Y Dutheil;Kasper Munch;Kiwoong Nam;Thomas Mailund;Mikkel Schierup;

10.1101/011601 — Evolutionary Biology — Posted on 2014-11-20

39 Strong selective sweeps on the X chromosome in the human-chimpanzee ancestor explain its low divergence

Julien Y Dutheil;Kasper Munch;Kiwoong Nam;Thomas Mailund;Mikkel Schierup;

10.1101/011601 — Evolutionary Biology — Posted on 2014-11-19

40 Expansion load: recessive mutations and the role of standing genetic variation

Stephan Peischl;Laurent Excoffier;

10.1101/011593 — Evolutionary Biology — Posted on 2014-11-18

41 Triticeae resources in Ensembl Plants

Dan M Bolser;Arnaud Kerhornou;Brandon Walts;Paul Kersey;

10.1101/011585 — Bioinformatics — Posted on 2014-11-18

42 Phenotypic Convergence in Bacterial Adaptive Evolution to Ethanol Stress

Takaaki Horinouchi;Shingo Suzuki;Takashi Hirasawa;Naoaki Ono;Tetsuya Yomo;Hiroshi Shimizu;Chikara Furusawa;

10.1101/011577 — Evolutionary Biology — Posted on 2014-11-18

43 The conversion of systolic volume into systolic pressure (the development of numerical model)

Yuri Kamnev;

10.1101/011536 — Physiology — Posted on 2014-11-17

44 The impact of comorbidity of intellectual disability on estimates of autism prevalence among children enrolled in US special education

Andrew Polyak;Richard M Kubina;Santhosh Girirajan;

10.1101/011528 — Genomics — Posted on 2014-11-17

45 Gene discovery and functional assessment of rare copy-number variants in neurodevelopmental disorders

Janani Iyer;Santhosh Girirajan;

10.1101/011510 — Genomics — Posted on 2014-11-17

46 Full-genome evolutionary histories of selfing, splitting and selection in Caenorhabditis

Cristel G. Thomas;Wei Wang;Richard Jovelin;Rajarshi Ghosh;Tatiana Lomasko;Quang Trinh;Leonid Kruglyak;Lincoln D Stein;Asher D Cutter;

10.1101/011502 — Genomics — Posted on 2014-11-18

47 Full-genome evolutionary histories of selfing, splitting and selection in Caenorhabditis

Cristel G. Thomas;Wei Wang;Richard Jovelin;Rajarshi Ghosh;Tatiana Lomasko;Quang Trinh;Leonid Kruglyak;Lincoln D Stein;Asher D Cutter;

10.1101/011502 — Genomics — Posted on 2014-11-17

48 Polymerase ζ activity is linked to replication timing in humans: evidence from mutational signatures

Vladimir B Seplyarskiy;Georgii A. Bazykin;Ruslan A. Soldatov;

10.1101/011494 — Molecular Biology — Posted on 2014-11-17

49 Independent Co-option of a Tailed Bacteriophage into a Killing Complex in Pseudomonas

Kevin L Hockett;Tanya Renner;David A Baltrus;

10.1101/011486 — Microbiology — Posted on 2014-11-17

50 Independent Co-option of a Tailed Bacteriophage into a Killing Complex in Pseudomonas

Kevin L Hockett;Tanya Renner;David A Baltrus;

10.1101/011486 — Microbiology — Posted on 2014-11-17

51 Independent Co-option of a Tailed Bacteriophage into a Killing Complex in Pseudomonas

Kevin L Hockett;Tanya Renner;David A Baltrus;

10.1101/011486 — Microbiology — Posted on 2014-11-16

52 A robust statistical framework for reconstructing genomes from metagenomic data

Dongwan Don Kang;Jeff Froula;Rob Egan;Zhong Wang;

10.1101/011460 — Bioinformatics — Posted on 2014-11-15

53 How Well Can We Detect Shifts in Rates of Lineage Diversification? A Simulation Study of Sequential AIC Methods

Michael R May;Brian R Moore;

10.1101/011452 — Evolutionary Biology — Posted on 2014-11-15

54 Circumstantial Evidence? Comparison of Statistical Learning Methods using Functional Annotations for Prioritizing Risk Variants

Sarah A Gagliano;Reena Ravji;Michael R Barnes;Michael E Weale;Jo Knight;

10.1101/011445 — Bioinformatics — Posted on 2014-11-15

55 R/qtlcharts: interactive graphics for quantitative trait locus mapping

Karl W Broman;

10.1101/011437 — Genetics — Posted on 2014-11-14

56 Increased evolutionary rate in the 2014 West African Ebola outbreak is due to transient polymorphism and not positive selection

Stephanie J. Spielman;Austin G. Meyer;Claus O. Wilke;

10.1101/011429 — Evolutionary Biology — Posted on 2014-11-19

57 Increased evolutionary rate in the 2014 West African Ebola outbreak is due to transient polymorphism and not positive selection

Stephanie J. Spielman;Austin G. Meyer;Claus O. Wilke;

10.1101/011429 — Evolutionary Biology — Posted on 2014-11-14

58 Sequence and primer independent stochastic heterogeneity in PCR amplification efficiency revealed by single molecule barcoding

Katharine Best;Theres Oakes;James M Heather;John Shawe-Taylor;Benny Chain;

10.1101/011411 — Molecular Biology — Posted on 2014-11-13

59 ENVIRONMENTS and EOL: identification of Environment Ontology terms in text and the annotation of the Encyclopedia of Life

Evangelos Pafilis;Sune P Frankild;Julia Schnetzer;Lucia Fanini;Sarah Faulwetter;Christina Pavloudi;Aikaterini Vasileiadou;Patrick Leary;Jennifer Hammock;Katja Schulz;Cynthia S Parr;Christos Arvanitidis;Lars Juhl Jensen;

10.1101/011403 — Bioinformatics — Posted on 2014-11-13

60 V genes in rodents from whole genome sequencing data

David Olivieri;Santiago Gambón-Cerdá;Francisco Gambón-Deza;

10.1101/011387 — Immunology — Posted on 2014-11-14

61 Recognition and identification of species in the Bombus lucorum-complex - A review and outlook

Silas Bossert;

10.1101/011379 — Zoology — Posted on 2014-11-13

62 The developmental transcriptome of contrasting Arctic charr (Salvelinus alpinus) morphs

Jóhannes Gudbrandsson;Ehsan P Ahi;Sigridur R Franzdottir;Kalina H Kapralova;Bjarni K Kristjánsson;Sophie S Steinhaeuser;Ísak M Jóhannesson;Valerie H Maier;Sigurdur S Snorrason;Zophonías O Jónsson;Arnar Pálsson;

10.1101/011361 — Evolutionary Biology — Posted on 2014-11-12

63 Accurate Identification of Active Transcriptional Regulatory Elements from Global Run-On and Sequencing Data

Charles G Danko;Stephanie L Hyland;Leighton J Core;Andre L Martins;Colin T Waters;Hyung Won Lee;Vivian G Cheung;W. Lee Kraus;John T. Lis;Adam Siepel;

10.1101/011353 — Genomics — Posted on 2014-11-12

64 Interactive analysis and quality assessment of single-cell copy-number variations

Tyler Garvin;Robert Aboukhalil;Jude Kendall;Timour Baslan;Gurinder S Atwal;James Hicks;Michael Wigler;Michael Schatz;

10.1101/011346 — Bioinformatics — Posted on 2014-11-12

65 Wide field-of-view, twin-region two-photon imaging across extended cortical networks

Jeffrey N. Stirman;Ikuko T. Smith;Michael W. Kudenov;Spencer L. Smith;

10.1101/011320 — Neuroscience — Posted on 2014-11-12

66 Ovarian embryonal rhabdomyosarcoma is a rare manifestation of the DICER1 syndrome

Leanne de Kock;Harriet Druker;Evan Weber;Nancy Hamel;Jeffery Traubici;David Malkin;Jocelyne Arseneau;Dorothée Bouron-Dal Soglio;John R. Priest;William D. Foulkes;

10.1101/011304 — Genetics — Posted on 2014-11-10

67 Where’s the noise? Key features of neuronal variability and inference emerge from self-organized learning

Christoph Hartmann;Andreea Lazar;Jochen Triesch;

10.1101/011296 — Neuroscience — Posted on 2014-11-10

68 Modes of interaction between individuals dominate the topologies of real world networks

Insuk Lee;Eiru Kim;Edward M. Marcotte;

10.1101/011288 — Systems Biology — Posted on 2014-11-10

69 A multivariate genome-wide association analysis of 10 LDL subfractions, and their response to statin treatment, in 1868 Caucasians

Heejung Shim;Daniel I Chasman;Joshua D Smith;Samia Mora;Paul M Ridker;Deborah A Nickerson;Ronald M Krauss;Matthew Stephens;

10.1101/011270 — Genetics — Posted on 2014-11-09

70 CGMD: An integrated database of Cancer Genes and Markers

Pradeep K Jangampalli Adi;Kranthi K Konidala;Nanda K Yellapu;Balasubramanyam L;Bhaskar Matcha;

10.1101/011262 — Cancer Biology — Posted on 2014-11-10

71 A Hidden Markov Model for Investigating Recent Positive Selection through Haplotype Structure

Hua Chen;Jody Hey;Montgomery Slatkin;

10.1101/011247 — Evolutionary Biology — Posted on 2014-11-08

72 WASP: allele-specific software for robust discovery of molecular quantitative trait loci

Bryce van de Geijn;Graham McVicker;Yoav Gilad;Jonathan Pritchard;

10.1101/011221 — Genomics — Posted on 2014-11-07

73 What to compare and how: comparative transcriptomics for Evo-Devo

Julien Roux;Marta Rosikiewicz;Marc Robinson-Rechavi;

10.1101/011213 — Evolutionary Biology — Posted on 2014-11-07

74 Tools and Methods from the Anopheles 16 Genome Project

Aaron Steele;Michael C. Fontaine;Andres Martin;Scott J Emrich;

10.1101/011205 — Bioinformatics — Posted on 2014-11-07

75 Annotating RNA motifs in sequences and alignments

Paul P Gardner;Hisham Eldai;

10.1101/011197 — Bioinformatics — Posted on 2014-11-06

76 Phase transitions in tumor growth: II prostate cancer cell lines

José Llanos Pérez;Juvencio A Betancourt Mar;María P De Miguel;Elena Izquierdo Kulich;Mar Royuela García;Eduardo Tejera;José M Nieto Villar;

10.1101/011189 — Biophysics — Posted on 2014-11-06

77 Epidemiological and evolutionary analysis of the 2014 Ebola virus outbreak

Marta Luksza;Trevor Bedford;Michael Lässig;

10.1101/011171 — Evolutionary Biology — Posted on 2014-11-06

78 Identifying highly-penetrant disease causal mutations using next generation sequencing: Guide to whole process

Mesut Erzurumluoglu;

10.1101/011130 — Bioinformatics — Posted on 2014-11-06

79 Exact solutions of linear reaction-diffusion processes on a uniformly growing domain: Criteria for successful colonization

Matthew J Simpson;

10.1101/011122 — Biophysics — Posted on 2014-11-06

80 The genetic architecture of local adaptation I: The genomic landscape of foxtail pine (Pinus balfouriana Grev. & Balf.) as revealed from a high-density linkage map

Christopher J Friedline;Brandon M Lind;Erin M Hobson;Douglas E Harwood;Annette Delfino Mix;Patricia E Maloney;Andrew J Eckert;

10.1101/011106 — Evolutionary Biology — Posted on 2014-11-05

81 The genetic architecture of local adaptation I: The genomic landscape of foxtail pine (Pinus balfouriana Grev. & Balf.) as revealed from a high-density linkage map

Christopher J Friedline;Brandon M Lind;Erin M Hobson;Douglas E Harwood;Annette Delfino Mix;Patricia E Maloney;Andrew J Eckert;

10.1101/011106 — Evolutionary Biology — Posted on 2014-11-04

82 Inference of cell-cell interactions from population density characteristics and cell trajectories on static and growing domains

Robert Ross;Christian A Yates;Ruth E Baker;

10.1101/011080 — Systems Biology — Posted on 2014-11-04

83 Bemovi, software for extracting BEhaviour and MOrphology from VIdeos.

Frank Pennekamp;Nicolas Schtickzelle;Owen L. Petchey;

10.1101/011072 — Ecology — Posted on 2014-11-07

84 A pedagogical walkthrough of computational modeling and simulation of Wnt signaling pathway using static causal models in Matlab

Shriprakash Sinha;

10.1101/011064 — Bioinformatics — Posted on 2014-11-04

85 Reverse enGENEering of regulatory networks from Big Data: a guide for a biologist

Andrey Morgun;Xiaoxi Dong;Anatoly Yambartsev;Stephen Ramsey;lina Thomas;Natalia Shulzhenko;

10.1101/011056 — Systems Biology — Posted on 2014-11-03

86 Phenotypic heterogeneity implements a game theoretic mixed strategy in a clonal microbial population

David Healey;Jeff Gore;

10.1101/011049 — Systems Biology — Posted on 2014-11-03

87 Distinct behavioral effects of prefrontal and parietal cortex inactivations on an accumulation of evidence task in the rat

Jeffrey C Erlich;Bingni W Brunton;Chunyu A Duan;Timothy D Hanks;Carlos D Brody;

10.1101/011031 — Neuroscience — Posted on 2014-11-04

88 GC-content evolution in bacterial genomes: the biased gene conversion hypothesis expands.

Florent Lassalle;Séverine Périan;Thomas Bataillon;Xavier Nesme;Laurent Duret;Vincent Daubin;

10.1101/011023 — Evolutionary Biology — Posted on 2014-11-04

89 E. coli populations in unpredictably fluctuating environments evolve to face novel stresses through enhanced efflux activity

Shraddha Madhav Karve;Sachit Daniel;Yashraj Chavhan;Abhishek Anand;Somendra Singh Kharola;Sutirth Dey;

10.1101/011007 — Evolutionary Biology — Posted on 2014-11-02

90 The role of TORC1 in muscle development in Drosophila.

Isabelle Hatfield;Innocence Harvey;Erika R. Yates;JeAnna R. Redd;Lawrence T. Reiter;Dave Bridges;

10.1101/010991 — Developmental Biology — Posted on 2014-11-02

91 Comprehensive comparison of large-scale tissue expression datasets

Alberto Santos;Kalliopi Tsafou;Christian Stolte;Sune Frankild;Seán O'Donoghue;Lars Juhl Jensen;

10.1101/010975 — Systems Biology — Posted on 2014-11-10

92 Resolving microbial microdiversity with high accuracy full length 16S rRNA Illumina sequencing

Catherine Burke;Aaron E Darling;

10.1101/010967 — Molecular Biology — Posted on 2014-11-06

93 CNVkit: Copy number detection and visualization for targeted sequencing using off-target reads

Eric Talevich;A. Hunter Shain;Thomas Botton;Boris C. Bastian;

10.1101/010876 — Bioinformatics — Posted on 2014-11-25

94 Bayesian analyses of Yemeni mitochondrial genomes suggest multiple migration events with Africa and Western Eurasia

Deven Nikunj Vyas;Andrew Kitchen;Aida Teresa Miró-Herrans;Laurel Nichole Pearson;Ali Al-Meeri;Connie Jo Mulligan;

10.1101/010629 — Evolutionary Biology — Posted on 2014-11-14

95 Bayesian analyses of Yemeni mitochondrial genomes suggest multiple migration events with Africa and Western Eurasia

Deven Nikunj Vyas;Andrew Kitchen;Aida Teresa Miró-Herrans;Laurel Nichole Pearson;Ali Al-Meeri;Connie Jo Mulligan;

10.1101/010629 — Evolutionary Biology — Posted on 2014-11-13

96 Mapping a viral phylogeny onto outbreak trees to improve host transmission inference

Stephen P Velsko;Jonathan E Allen;

10.1101/010389 — Bioinformatics — Posted on 2014-11-11

97 How predator hunting-modes affect prey behaviour: Capture deterrence in Drosophila melanogaster

Abhijna Parigi;Cody Porter;Megan Cermak;William R. Pitchers;Ian Dworkin;

10.1101/010330 — Animal Behavior and Cognition — Posted on 2014-11-19

98 FinisherSC : A repeat-aware tool for upgrading de-novo assembly using long reads

Ka Kit Lam;Kurt LaButti;Asif Khalak;David Tse;

10.1101/010215 — Bioinformatics — Posted on 2014-11-03

99 Abnormal X Chromosome Inactivation in Females with Major Psychiatric Disorders

Baohu Ji;Kerin K Higa;John Kelsoe;Xianjin Zhou;

10.1101/009555 — Neuroscience — Posted on 2014-11-10

100 Viscous deformation of relaxing ventricle and pulsatile blood propelling (numerical model)

Yuri Kamnev;

10.1101/009522 — Physiology — Posted on 2014-11-10

101 Accounting for eXentricities: Analysis of the X chromosome in GWAS reveals X-linked genes implicated in autoimmune diseases

Diana Chang;Feng Gao;Li Ma;Aaron Sams;Andrea Slavney;Yedael Waldman;Paul Billing-Ross;Aviv Madar;Richard Spritz;Alon Keinan;

10.1101/009464 — Genetics — Posted on 2014-11-19

102 Relationship between protein thermodynamic constraints and variation of evolutionary rates among sites

Julian Echave;Eleisha L. Jackson;Claus O. Wilke;

10.1101/009423 — Biophysics — Posted on 2014-11-18

103 MUSiCC: A marker genes based framework for metagenomic normalization and accurate profiling of gene abundances in the microbiome.

Ohad Manor;Elhanan Borenstein;

10.1101/009407 — Genomics — Posted on 2014-11-14

104 DNA Denaturing through UV-C Photon Dissipation: A Possible Route to Archean Non-enzymatic Replication

Karo Michaelian;Norberto Santillán Padilla;

10.1101/009126 — Biophysics — Posted on 2014-11-24

105 Evolving mutation rate advances invasion speed of sexual species

Marleen M. P. Cobben;Alexander Kubisch;

10.1101/008979 — Evolutionary Biology — Posted on 2014-11-28

106 Systematic Imaging Reveals Features of Localized mRNAs and Their Changing Subcellular Destinations in Development

Helena Jambor;Vineeth Surendranath;Alex T. Kalinka;Pavel Mejstrik;Stephan Saalfeld;Pavel Tomancak;

10.1101/008938 — Developmental Biology — Posted on 2014-11-04

107 A Consistent Estimator of the Evolutionary Rate

Krzysztof Bartoszek;Serik Sagitov;

10.1101/008714 — Evolutionary Biology — Posted on 2014-11-10

108 Estimating the temporal and spatial extent of gene flow among sympatric lizard populations (genus Sceloporus) in the southern Mexican highlands

Jared A Grummer;Martha L. Calderón;Adrián Nieto Montes-de Oca;Eric N Smith;Fausto Méndez-de la Cruz;Adam Leaché;

10.1101/008623 — Evolutionary Biology — Posted on 2014-11-20

109 Modelling reactions catalysed by carbohydrate-active enzymes

Önder Kartal;Oliver Ebenhöh;

10.1101/008615 — Systems Biology — Posted on 2014-11-12

110 TACC3-ch-TOG track the growing tips of microtubules independently of clathrin and Aurora-A phosphorylation

Cristina Gutiérrez-Caballero;Selena G Burgess;Richard Bayliss;Stephen J Royle;

10.1101/008359 — Cell Biology — Posted on 2014-11-04

111 TACC3-ch-TOG track the growing tips of microtubules independently of clathrin and Aurora-A phosphorylation

Cristina Gutiérrez-Caballero;Selena G Burgess;Richard Bayliss;Stephen J Royle;

10.1101/008359 — Cell Biology — Posted on 2014-11-04

112 Long-term balancing selection in LAD1 maintains a missense trans-species polymorphism in humans, chimpanzees and bonobos

João C. Teixeira;Cesare de Filippo;Antje Weihmann;Juan R. Meneu;Fernando Racimo;Michael Dannemann;Birgit Nickel;Anne Fischer;Michel Halbwax;Claudine Andre;Rebeca Atencia;Matthias Meyer;Genís Parra;Svante Pääbo;Aida M. Andrés;

10.1101/006684 — Evolutionary Biology — Posted on 2014-11-10

113 Transgenic expression of the dicotyledonous pattern recognition receptor EFR in rice leads to ligand-dependent activation of defense responses

Benjamin Schwessinger;Ofir Bahar;Thomas Nicolas;Nicolas Holton;Vladimir Nekrasov;Randy Ruan;Patrick Canlas;Arsalan Daudi;Christopher Petzold;Vasanth Singan;Rita Kuo;Mansi Chovatia;Chris Daum;Joshua Heazlewood;Cyril Zipfel;Pamela Ronald;

10.1101/006155 — Plant Biology — Posted on 2014-11-17

114 Quantifying the effects of anagenetic and cladogenetic evolution

Krzysztof Bartoszek;

10.1101/005561 — Evolutionary Biology — Posted on 2014-11-10

115 Phylogenetic confidence intervals for the optimal trait value

Krzysztof Bartoszek;Serik Sagitov;

10.1101/005314 — Evolutionary Biology — Posted on 2014-11-10

116 Detecting patterns of species diversification in the presence of both rate shifts and mass extinctions

Sacha Laurent;Marc Robinson-Rechavi;Nicolas Salamin;

10.1101/004572 — Evolutionary Biology — Posted on 2014-11-24

117 Flexible methods for estimating genetic distances from nucleotide data

Simon Joly;David J Bryant;Peter J Lockhart;