bioRxiv directory

Wang, H.; Wang, J.; Thow, X. Y.; Lee, C.

10.1101/343905 — neuroscience — Posted on 2018-10-31

3 New insights into human nostril microbiome from the expanded Human Oral Microbiome Database (eHOMD): a resource for species-level identification of microbiome data from the aerodigestive tract

Fernandez Escapa, I.; Chen, T.; Huang, Y.; Gajare, P.; Dewhirst, F. E.; Lemon, K. P.

10.1101/347013 — microbiology — Posted on 2018-10-31

4 Haplotype-phased common marmoset embryonic stem cells for genome editing using CRISPR/Cas9

Zhou, B.; Ho, S. S.; Leung, L. C.; Ward, T. R.; Ho, M.; Plastini, M. J.; Vermilyea, S. C.; Emborg, M. E.; Golos, T. G.; Mourrain, P.; Perrin, D.; Parker, K. J.; Urban, A. E.

10.1101/373886 — genetics — Posted on 2018-10-31

5 Changes in the Active, Dead, and Dormant Microbial Community Structure Across a Pleistocene Permafrost Chronosequence

Burkert, A.; Douglas, T. A.; Waldrop, M. P.; Mackelprang, R.

10.1101/457259 — microbiology — Posted on 2018-10-31

6 Social relationships, social isolation, and the human gut microbiota

Dill-McFarland, K.; Tang, Z.-Z.; Kemis, J.; Kerby, R.; Chen, G.; Palloni, A.; Sorenson, T.; Rey, F.; Herd, P.

10.1101/428938 — microbiology — Posted on 2018-10-31

7 The Markov link method: a nonparametric approach to combine observations from multiple experiments

Loper, J.; Bakken, T.; Sumbul, U.; Murphy, G.; Zeng, H.; Blei, D.; Paninski, L.

10.1101/457283 — bioinformatics — Posted on 2018-10-31

8 Large-scale neuron cell classification of single-channel and multi-channel extracellular recordings in the anterior lateral motor cortex

Parikh, R.

10.1101/445700 — neuroscience — Posted on 2018-10-31

9 The genome of the plague-resistant great gerbil reveals species-specific duplication of an MHCII gene

Nilsson, P.; Solbakken, M. H.; Schmid, B. V.; Orr, R. J. S.; Lv, R.; Cui, Y.; Song, Y.; Zhang, Y.; Stenseth, N. C.; Yang, R.; Jakobsen, K. S.; Easterday, W. R.; Jentoft, S.

10.1101/449553 — genomics — Posted on 2018-10-31

10 A risk-reward tradeoff of high ribosome production in proliferating cells

Tye, B. W.; Commins, N.; Springer, M.; Pincus, D.; Churchman, L. S.

10.1101/458810 — cell biology — Posted on 2018-10-31

11 The more you know: Investigating why adults get a bigger memory boost from semantic congruency than children

Wang, W.-C.; Ghetti, S.; Brod, G.; Bunge, S. A.

10.1101/456624 — neuroscience — Posted on 2018-10-31

12 Effect of a Sepsis Prediction Algorithm on Patient Mortality, Length of Stay, and Readmission

Burdick, H.; Pino, E.; Gabel-Comeau, D.; McCoy, A.; Gu, C.; Roberts, J.; Slote, J.; Saber, N.; Hoffman, J.; Das, R.

10.1101/457465 — bioinformatics — Posted on 2018-10-31

13 Researchers collaborate with same-gendered colleagues more often than expected across the life sciences

Holman, L.; Morandin, C.

10.1101/345975 — scientific communication and education — Posted on 2018-10-31

14 How face perception unfolds over time

Dobs, K.; Isik, L.; Pantazis, D.; Kanwisher, N.

10.1101/442194 — neuroscience — Posted on 2018-10-31

15 An infant mouse model of influenza virus transmission demonstrates the role of virus-specific shedding, humoral immunity, and sialidase expression by colonizing Streptococcus pneumoniae.

Ortigoza, M. B.; Blaser, S.; Zafar, M. A.; Hammond, A.; Weiser, J. N.

10.1101/456665 — microbiology — Posted on 2018-10-31

16 Changes in the Active, Dead, and Dormant Microbial Community Structure Across a Pleistocene Permafrost Chronosequence

Burkert, A.; Douglas, T. A.; Waldrop, M. P.; Mackelprang, R.

10.1101/457259 — microbiology — Posted on 2018-10-31

17 Measuring \"intolerance to mutation\" in human genetics

Fuller, Z.; Berg, J. J.; Mostafavi, H.; Sella, G.; Przeworski, M.

10.1101/382481 — genetics — Posted on 2018-10-31

18 Commonly-used FRET fluorophores promote collapse of an otherwise disordered protein.

Riback, J. A.; Bowman, M. A.; Zmyslowski, A. M.; Plaxco, K. W.; Clark, P. L.; Sosnick, T. R.

10.1101/376632 — biophysics — Posted on 2018-10-31

19 An unsupervised deep learning framework with variational autoencoders for genome-wide DNA methylation analysis and biologic feature extraction applied to breast cancer

Titus, A. J.; Wilkins, O. M.; Bobak, C. A.; Christensen, B. C.

10.1101/433763 — bioinformatics — Posted on 2018-10-31

20 Directed evolution of split APEX peroxidase

Han, Y.; Martell, J.; Branon, T.; Boassa, D.; Shechner, D.; Ellisman, M.; Ting, A.

10.1101/452888 — bioengineering — Posted on 2018-10-31

21 ATM is activated by ATP depletion and modulates mitochondrial function through NRF1

Chow, H.-M.; Cheng, A.; Song, X.; Swerdel, M. R.; Hart, R. P.; Herrup, K.

10.1101/414490 — neuroscience — Posted on 2018-10-31

22 City-wide metagenomics uncover antibiotic resistance reservoirs in urban beach and sewage waters

Fresia, P.; Antelo, V.; Salazar, C.; Gimenez, M.; D'Alessandro, B.; Afshinnekoo, E.; Mason, C.; Gonnet, G.; Iraola, G.

10.1101/456517 — genomics — Posted on 2018-10-31

23 Gene flow improves fitness at a range edge under climate change

Bontrager, M.; Angert, A.

10.1101/399469 — evolutionary biology — Posted on 2018-10-31

24 TBtools, a Toolkit for Biologists integrating various biological data handling tools with a user-friendly interface

Chen, C.; Xia, R.; Chen, H.; He, Y.

10.1101/289660 — bioinformatics — Posted on 2018-10-31

25 Inter-slice leakage and intra-slice aliasing in simultaneous multi-slice echo-planar images

McNabb, C. B.; Lindner, M.; Shen, S.; Murayama, K.; Burgess, L. G.; Johnstone, T.

10.1101/458042 — neuroscience — Posted on 2018-10-31

26 Molecular evolutionary trends and feeding ecology diversification in the Hemiptera, anchored by the milkweed bug genome

Panfilio, K. A.; Vargas Jentzsch, I. M.; Benoit, J. B.; Erezyilmaz, D.; Suzuki, Y.; Colella, S.; Robertson, H. M.; Poelchau, M. F.; Waterhouse, R. M.; Ioannidis, P.; Weirauch, M. T.; Hughes, D. S. T.; Murali, S. C.; Werren, J. H.; Jacobs, C. G. C.; Duncan, E. J.; Armisen, D.; Vreede, B. M. I.; Baa-Puyoulet, P.; Berger, C. S.; Chang, C.-c.; Chao, H.; Chen, M.-J. M.; Chen, Y.-T.; Childers, C. P.; Chipman, A. D.; Cridge, A. G.; Crumiere, A. J. J.; Dearden, P. K.; Didion, E. M.; Dinh, H.; Doddapaneni, H.; Dolan, A.; Dugan-Perez, S.; Extavour, C. G.; Febvay, G.; Friedrich, M.; Ginzburg, N.; Han, Y.

10.1101/201731 — genomics — Posted on 2018-10-31

27 Cell shape regulates subcellular organelle location to control short-term Ca2+ signal dynamics in VSMC

Calizo, R. C.; Ron, A.; Hu, M.; Bhattacharya, S.; Janssen, W. G. M.; Hone, J.; Scarlata, S.; Rangamani, P.; Iyengar, R.

10.1101/161950 — cell biology — Posted on 2018-10-31

28 Neural correlates of auditory enhancement in humans

Feng, L.; Mehta, A. H.; Oxenham, A. J.

10.1101/458521 — neuroscience — Posted on 2018-10-31

29 Global lysine acetylation in Escherichia coli results from growth conditions that favor acetate fermentation

Schilling, B.; Basisty, N.; Christensen, D. G.; Sorensen, D.; Orr, J. S.; Wolfe, A. J.; Rao, C.

10.1101/457929 — microbiology — Posted on 2018-10-31

30 New Insights into the Nature of Symbiotic Associations in Aphids: Initial Steps Involved in Aphid Gut Infection by Serratia symbiotica Bacteria

Pons, I.; Renoz, F.; Noel, C.; Hance, T.

10.1101/457945 — evolutionary biology — Posted on 2018-10-31

31 Revealing an extended critical window of recovery post-stroke

Rubio Ballester, B.; Duff, A.; Maier, M.; Cameirao, M.; Bermudez, S.; Duarte, E.; Cuxart, A.; Rodriguez, S.; Verschure, P. F. M. J.

10.1101/458745 — neuroscience — Posted on 2018-10-31

32 Diverse tuning underlies sparse activity in L2/3 vibrissal cortex of awake mice

Ranjbar-Slamloo, Y.; Arabzadeh, E.

10.1101/457796 — neuroscience — Posted on 2018-10-31

33 The Archaellum of Methanospirillum hungatei is Electrically Conductive

Walker, D. J. F.; Martz, E.; Holmes, D. E.; Zhou, Z.; Nonnenmann, S. S.; Lovley, D. R.

10.1101/458356 — microbiology — Posted on 2018-10-31

34 Mutations in Rv2983 as a novel determinant of resistance to nitroimidazole drugs in Mycobacterium tuberculosis

Rifat, D.; Li, S.-Y.; Ioerger, T.; Lanoix, J.-P.; Lee, J.; Bashiri, G.; Sacchettini, J.; Nuermberger, E.

10.1101/457754 — microbiology — Posted on 2018-10-31

35 Limitations of Topological Data Analysis for event-related fMRI

Ellis, C. T.; Lesnick, M.; Henselman-Petrusek, G.; Keller, B.; Cohen, J. D.

10.1101/457747 — neuroscience — Posted on 2018-10-31

36 Novel 3,6-Dihydroxypicolinic Acid Decarboxylase Mediated Picolinic Acid Catabolism in Alcaligenes faecalis JQ135

Qiu, J.; Zhang, Y.; Yao, S.-G.; Ren, H.; Qian, M.; Hong, Q.; Lu, Z.; He, J.

10.1101/457895 — microbiology — Posted on 2018-10-31

37 Indirect genetic effects clarify how traits can evolve even when fitness does not

Fisher, D. N.; McAdam, A. G.

10.1101/458695 — evolutionary biology — Posted on 2018-10-31

38 Collective excitations in alpha-helical protein structures interacting with environment

Kadantsev, V. N.; Goltsov, A.

10.1101/457580 — biophysics — Posted on 2018-10-31

39 Non-High Frequency Heart Rate Chaos: A Noninvasive Marker of REM Sleep and Obstructive Sleep Apnea Syndrome in Children

Deng, Z.-D.; Arzeno, N. M.; Katz, E. S.; Chang, H.; Marcus, C. L.; Poon, C.-S.

10.1101/457630 — physiology — Posted on 2018-10-31

40 Identification of Pirin as a Molecular Target of the CCG-1423/CCG-203971 Series of Anti-Fibrotic and Anti-Metastatic Compounds

Lisabeth, E. M.; Kahl, D.; Gopallawa, I.; Haynes, S. E.; Misek, S. A.; Campbell, P. L.; Dexheimer, T. S.; Khanna, D.; Fox, D. A.; Jin, X.; Martin, B. R.; Larsen, S. D.; Neubig, R. R.

10.1101/458554 — pharmacology and toxicology — Posted on 2018-10-31

41 Local online learning in recurrent networks with random feedback

Murray, J. M.

10.1101/458570 — neuroscience — Posted on 2018-10-31

42 Dynamics of transposable element invasions with piRNA clusters

Kofler, R.

10.1101/458059 — evolutionary biology — Posted on 2018-10-31

43 Remodelling of pSK1 Family Plasmids and Enhanced Chlorhexidine Tolerance in Methicillin-Resistant Staphylococcus aureus

Baines, S. L.; Jensen, S. O.; Firth, N.; Goncalves da Silva, A.; Seemann, T.; Carter, G. P.; Williamson, D. A.; Howden, B. P.; Stinear, T. P.

10.1101/457838 — evolutionary biology — Posted on 2018-10-31

44 Patterns of hybrid seed inviability in perennials of the Mimulus guttatus sp. complex reveal a potential role of parental conflict in reproductive isolation

Coughlan, J. M.; Wilson Brown, M.; Willis, J. H.

10.1101/458315 — evolutionary biology — Posted on 2018-10-31

45 Testing the fast consolidation hypothesis of retrieval-mediated learning

Ferreira, C. S.; Charest, I.; Wimber, M.

10.1101/458687 — neuroscience — Posted on 2018-10-31

46 Bacterial Zombies And Ghosts: Production Of Inactivated Gram-Positive And Gram-Negative Species With Preserved Cellular Morphology And Cytoplasmic Content

Taddese, R.; Belzer, C.; Aalvink, S.; de Jonge, M. I.; Nagtegaal, I. D.; Dutilh, B. E.; Boleij, A.

10.1101/458158 — microbiology — Posted on 2018-10-31

47 Phylogenomics and species delimitation of mobulid rays reveals cryptic diversity and a new species of manta ray

Hosegood, J.; Humble, E.; Ogden, R.; de Bruyn, M.; Creer, S.; Stevens, G.; Abudaya, M.; Bassos-Hull, K.; Bonfil, R.; Fernando, D.; Foote, A. D.; Hipperson, H.; Jabado, R. W.; Kaden, J.; Moazzam, M.; Peel, L.; Pollett, S.; Ponzo, A.; Poortvliet, M.; Salah, J.; Senn, H.; Stewart, J.; Wintner, S.; Carvalho, G.

10.1101/458141 — genomics — Posted on 2018-10-31

48 Biological adaptation under fluctuating selection

Liu, M.; Rubenstein, D.; Liu, W.-C.; Shen, S.-F.

10.1101/457762 — ecology — Posted on 2018-10-31

49 RNA is a critical element for the sizing and the composition of phase-separated RNA-protein condensates

Garcia-Jove Navarro, M.; Kashida, S.; Chouaib, R.; Souquere, S.; Pierron, G.; Weil, D.; Gueroui, Z.

10.1101/457986 — cell biology — Posted on 2018-10-31

50 Integrating Molecular Simulation and Experimental Data: A Bayesian/Maximum Entropy Reweighting Approach

Bottaro, S.; Bengtsen, T.; Lindorff-Larsen, K.

10.1101/457952 — biophysics — Posted on 2018-10-31

51 Impact of using a personalized genome on histone ChIP-seq peak calls

Groza, C.; Ge, B.; Kwan, T.; Soranzo, N.; Pastinen, T.; Bourque, G.

10.1101/457101 — bioinformatics — Posted on 2018-10-31

52 Transfer learning in single-cell transcriptomics improves data denoising and pattern discovery

Wang, J.; Agarwal, D.; Huang, M.; Hu, G.; Zhou, Z.; Conley, V. B.; MacMullan, H.; Zhang, N. R.

10.1101/457879 — bioinformatics — Posted on 2018-10-31

53 External evaluation of population pharmacokinetic models for vancomycin in neonates

Tasa, T.; Kalamees, R.; Vilo, J.; Lutsar, I.; Metsvaht, T.

10.1101/458125 — pharmacology and toxicology — Posted on 2018-10-31

54 Antibacterial activity of total flavonoids from Ilex rotunda Thunb. and different antibacterials on different multidrug-resistant bacteria alone or in combination

Wu, Y.; Chai, B.; Wang, L.; Jiang, W.; Hu, M.; Zhao, Y.; Si, H.

10.1101/457911 — microbiology — Posted on 2018-10-31

55 Two Chloroflexi classes independently evolved the ability to persist on atmospheric hydrogen and carbon monoxide

Islam, Z. F.; Cordero, P. R. F.; Feng, J.; Chen, Y.-J.; Bay, S.; Gleadow, R. M.; Jirapanjawat, T.; Carere, C. R.; Stott, M. B.; Chiri, E.; Greening, C.

10.1101/457697 — microbiology — Posted on 2018-10-31

56 Efficient assembly and long-term stability of defensive microbiomes via private resources and community bistability

Boza, G.; Worsley, S. F.; Yu, D.; Scheuring, I.

10.1101/457721 — microbiology — Posted on 2018-10-31

57 Extracellular electron uptake by two Methanosarcina species

Yee, M. O.; Snoeyenbos-West, O. L. O.; Thamdrup, B.; Ottosen, L. D. M.; Rotaru, A.-E.

10.1101/458091 — microbiology — Posted on 2018-10-31

58 Joint analysis of gene expression levels and histological images identifies genes associated with tissue morphology

Ash, J.; Darnell, G.; Munro, D.; Engelhardt, B.

10.1101/458711 — genomics — Posted on 2018-10-31

59 Fluctuating pathogen-mediated selection drives the maintenance of innate immune gene polymorphism in a widespread wild ungulate

QUEMERE, E.; Hessenauer, P.; Galan, M.; Fernandez, M.; Merlet, J.; Chaval, Y.; Hewison, A. J. M.; Morellet, N.; Verheyden, H.; Gilot Fromont, E.; Charbonnel, N.

10.1101/458216 — evolutionary biology — Posted on 2018-10-31

60 Deep gastropod relationships resolved

Cunha, T. J.; Giribet, G.

10.1101/457770 — evolutionary biology — Posted on 2018-10-31

61 A human impact metric for coastal ecosystems with application to seagrass beds in Atlantic Canada

Murphy, G. E.; Wong, M.; Lotze, H. K.

10.1101/457382 — ecology — Posted on 2018-10-31

62 Oxygen plasma focused ion beam scanning electron microscopy for biological samples

Gorelick, S.; Korneev, D.; Handley, A.; Gervinskas, G.; Oorschot, V.; Kaluza, O. L.; Law, R. H.; O'Bryan, M.; Pocock, R.; Whisstock, J. C.; de Marco, A.

10.1101/457820 — cell biology — Posted on 2018-10-31

63 In-Cell Structural Dynamics of an EGF Receptor during Ligand-induced Dimer-Oligomer Transition.

Clayton, A.; Kozer, N.

10.1101/458265 — biophysics — Posted on 2018-10-31

64 High-resolution models of actin-bound myosin from EPR of a bifunctional spin label

Binder, B. P.; Thompson, A. R.; Thomas, D. D.

10.1101/458257 — biophysics — Posted on 2018-10-31

65 The two active glutamates of the plant stress sensor PsbS contribute non-equivalently to its pH-activated molecular response mechanism

Krishnan, M.; Konold, P.; Kenis, J.; Pandit, A.

10.1101/457614 — biophysics — Posted on 2018-10-31

66 The emergence of multiple retinal cell types through efficient coding of natural movies

Ocko, S. A.; Lindsey, J.; Ganguli, S.; Deny, S.

10.1101/458737 — neuroscience — Posted on 2018-10-31

67 Dynamic changes in cerebral and peripheral markers of glutamatergic signaling across the human sleep-wake cycle

Weigend, S.; Holst, S. C.; Treyer, V.; O'Gorman Tuura, R. L.; Meier, J.; Ametamey, S. M.; Buck, A.; Landolt, H.-P.

10.1101/458885 — neuroscience — Posted on 2018-10-31

68 Stochastic bacterial population dynamics prevent the emergence of antibiotic resistance within the mutant selection window

Alexander, H. K.; MacLean, C.

10.1101/458547 — microbiology — Posted on 2018-10-31

69 Physiological genomics of dietary adaptation in a marine herbivorous fish

Heras, J.; Chakraborty, M.; Emerson, J. J.; German, D.

10.1101/457705 — genomics — Posted on 2018-10-31

70 Parallel patterns of development between independent cases of hybrid seed inviability in Mimulus

Coughlan, J. M.; Willis, J. H.

10.1101/458752 — evolutionary biology — Posted on 2018-10-31

71 The Cten signalling pathway stabilises Src protein to promote Epithelial-Mesenchymal Transition (EMT) in colorectal cancer

Asiri, A.; Toss, M. S.; Raposo, T. P.; Akhlaq, M.; Thorpe, H.; Alfahed, A.; Asiri, A.; Ilyas, M.

10.1101/458109 — cancer biology — Posted on 2018-10-31

72 Sub-diffusive dynamics lead to depleted particle densities near cellular borders

Holmes, W.

10.1101/458224 — biophysics — Posted on 2018-10-31

73 A practical guide to methods controlling false discoveries in computational biology

Korthauer, K.; Kimes, P. K.; Duvallet, C.; Reyes, A.; Subramanian, A.; Teng, M.; Shukla, C.; Alm, E. J.; Hicks, S. C.

10.1101/458786 — bioinformatics — Posted on 2018-10-31

74 Tethered homing gene drives: a new design for spatially restricted population replacement and suppression

Dhole, S.; Loyd, A. L.; Gould, F.

10.1101/457564 — bioengineering — Posted on 2018-10-31

75 High-throughput identification of FLT3 wild-type and mutant kinase substrate preferences and application to design of sensitive in vitro kinase assay substrates

Perez, M.; Blankenhorn, J.; Murray, K. J.; Parker, L. L.

10.1101/457689 — biochemistry — Posted on 2018-10-31

76 Is physiological stress state reflected in acoustic structure of vocalizations? An experimental test in wild North American red squirrels

Sehrsweeney, M.; Wilson, D. R.; Bain, M.; Boutin, S.; Lane, J. E.; McAdam, A. G.; Dantzer, B.

10.1101/456830 — animal behavior and cognition — Posted on 2018-10-31

77 The interaction between genotype and maternal nutritional environments affects tomato seed and seedling quality

Geshnizjani, N.; Sarikhani Khorami, S.; Willems, L. A. J.; Snoek, B. L.; Hilhorst, H.; Ligterink, W.

10.1101/458836 — plant biology — Posted on 2018-10-31

78 Temporal evolution of beta bursts in the parkinsonian cortico-basal ganglia network

Cagnan, H.; Mallet, N.; Moll, C. K. E.; Gulberti, A.; Westphal, M.; Gerloff, C.; Engel, A. K.; Hamel, W.; Magill, P. J.; Brown, P.; Sharott, A.

10.1101/458414 — neuroscience — Posted on 2018-10-31

79 Chronic intermittent ethanol and acute stress similarly modulate BNST CRF neuron activity via noradrenergic signaling

Snyder, A. E.; Winder, D. G.; Silberman, Y.

10.1101/458349 — neuroscience — Posted on 2018-10-31

80 Human APOBEC3G prevents emergence of infectious endogenous retrovirus in mice

Treger, R.; Tokuyama, M.; Dong, H.; Ross, S. R.; Kong, Y.; Iwasaki, A.

10.1101/457937 — immunology — Posted on 2018-10-31

81 Multiparameter cell characterization using nanofluidic technology facilitates real-time phenotypic and genotypic elucidation of intratumor heterogeneity

Beaumont, K. G.; Hamou, W.; Bozinovic, N.; Silvers, T. R.; Shah, H.; Dave, A.; Allette, K.; Strahl, M.; Wang, Y.-c.; Arib, H.; Antoine, A.; Ellis, E.; Smith, M.; Bruhn, B.; Dottino, P.; Martignetti, J. A.; Schadt, E.; White, M.; Sebra, R.

10.1101/457010 — genomics — Posted on 2018-10-31

82 Resistance Gene-Directed Genome Mining of 50 Aspergillus species

Kjaerbolling, I.; Vesth, T. C.; Andersen, M. R.

10.1101/457903 — genomics — Posted on 2018-10-31

83 A complete Cannabis chromosome assembly and adaptive admixture for elevated cannabidiol (CBD) content

Grassa, C. J.; Wenger, J. P.; Dabney, C.; Poplawski, S. G.; Motley, S. T.; Michael, T. P.; Schwartz, C. J.; Weiblen, G. D.

10.1101/458083 — genomics — Posted on 2018-10-31

84 Integrated Cell Expression Toolkit for low input transcript profiling

Day, R. C.; Godwin, T. D.; Harris, C.; Stockwell, P.; Shaw, A.; Guilford, P. J.

10.1101/458851 — genomics — Posted on 2018-10-31

85 A new class of constitutively active super-enhancers is associated with fast recovery of 3D chromatin loops

Ryu, J.; Kim, H.; Yang, D.; Lee, A. J.; Jung, I.

10.1101/458117 — genomics — Posted on 2018-10-31

86 A diallel of the mouse Collaborative Cross founders reveals strong strain-specific maternal effects on litter size

Shorter, J. R.; Maurizio, P. L.; Bell, T. A.; Shaw, G. D.; Miller, D. R.; Gooch, T. J.; Spence, J. S.; McMillan, L.; Valdar, W.; Pardo-Manuel de Villena, F.

10.1101/458877 — genetics — Posted on 2018-10-31

87 A comprehensive genetic characterisation of the mitochondrial Ca2+ uniporter in Drosophila

Tufi, R.; Gleeson, T.; von Stockum, S.; Hewitt, V.; Lee, J.; Terriente-Felix, A.; Sanchez-Martinez, A.; Ziviani, E.; Whitworth, A.

10.1101/458174 — cell biology — Posted on 2018-10-31

88 A risk-reward tradeoff of high ribosome production in proliferating cells

Tye, B. W.; Commins, N.; Springer, M.; Pincus, D.; Churchman, L. S.

10.1101/458810 — cell biology — Posted on 2018-10-31

89 Immediate visualization of recombination events and chromosome segregation defects in fission yeast meiosis

Li, D.; Roca, M.; Yuecel, R.; Lorenz, A.

10.1101/458398 — genetics — Posted on 2018-10-31

90 Intraflagellar transport protein 74 is essential for mouse spermatogenesis and male fertility by regulating axonemal microtubule assembly in mice

Shi, L.; Zhou, T.; Huang, Q.; Zhang, S.; Li, W.; Zhang, L.; Hess, R. A.; Pazour, G. J.; zhang, z.

10.1101/457804 — developmental biology — Posted on 2018-10-31

91 N6-methyladenosine mRNA marking promotes selective translation of regulons required for human erythropoiesis

Kuppers, D.; Arora, S.; Lim, Y.; Lim, A.; Carter, L.; Corrin, P.; Plasier, C.; Basom, R.; Delrow, J.; Wang, S.; He, H.; Torok-Storb, B.; Hsieh, A.; Paddison, P.

10.1101/457648 — cell biology — Posted on 2018-10-31

92 Decoding dynamic implicit and explicit representations of facial expressions of emotion from EEG

Smith, F.; Smith, M. L.

10.1101/453654 — neuroscience — Posted on 2018-10-31

93 Linker histones regulate fine-scale chromatin organization and modulate developmental decisions in Arabidopsis

Rutowicz, K.; Lirski, M.; Mermaz, B.; Schubert, J.; Teano, G.; Mestiri, I.; Kroten, M. A.; Ndinyanka Fabrice, T.; Fritz, S.; Grob, S.; Ringli, C.; Cherkezyan, L.; Barneche, F.; Jerzmanowski, A.; Baroux, C.

10.1101/458364 — molecular biology — Posted on 2018-10-31

94 Novel Mechanism for Surface Layer Shedding and Regenerating in Bacteria Exposed to Metal-Contaminated Conditions

Chandramohan, A.; Duprat, E.; Remusat, L.; Zirah, S.; Lombard, C.; Kish, A.

10.1101/457358 — microbiology — Posted on 2018-10-31

95 Clinical Characterization of Host Response to Simian Hemorrhagic Fever Virus Infection in Permissive and Refractory Hosts: A Model for Determining Mechanisms of VHF Pathogenesis

Cornish, J. P.; Moore, I. N.; Perry, D. L.; Lara, A.; Minai, M.; Promeneur, D.; Hagan, K. R.; Virtaneva, K.; Paneru, M.; Buechler, C.; O'Connor, D. H.; Bailey, A. L.; Cooper, K.; Mazur, S.; Bernbaum, J. G.; Pettitt, J.; Jahrling, P. B.; Kuhn, J. H.; Johnson, R. F.

10.1101/454462 — immunology — Posted on 2018-10-31

96 Celestially determined annual seasonality of equatorial tropical rain forests

Kitayama, K.; Ushio, M.; Aiba, S.-i.

10.1101/454058 — ecology — Posted on 2018-10-31

97 A curated list of genes that control elemental accumulation in plants.

Whitt, L.; Ricachenevsky, F.; Ziegler, G.; Clemens, S.; Walker, E.; Maathuis, F. J. M.; Kear, P.; Baxter, I.

10.1101/456384 — plant biology — Posted on 2018-10-31

98 Deep Learning on MRI Affirms the Prominence of the Hippocampal Formation in Alzheimer’s Disease Classification

Feng, X.; Yang, J.; Lipton, Z. C.; Small, S. A.; Provenzano, F. A.

10.1101/456277 — neuroscience — Posted on 2018-10-31

99 Demography, class-structure and kin selection in continuous-time models

Rodrigues, A. M. M.

10.1101/456012 — evolutionary biology — Posted on 2018-10-31

100 An ER-resident calcium binding protein modulates egress of malaria parasites from erythrocytes

Fierro, M. A.; HortuaTriana, M. A.; Brooks, C. F.; Asady, B.; Li, C.; Moreno, S. N. J.; Muralidharan, V.

10.1101/457481 — cell biology — Posted on 2018-10-31

101 Dedicated acetic acid preference coded by broad spectrum ionotropic receptors in a moth species

Tang, R.; Jiang, N.-J.; Ning, C.; Huang, L.-Q.; Wang, C.-Z.

10.1101/458646 — neuroscience — Posted on 2018-10-31

102 A triterpenoid saponin, Spergulin-A from Glinus oppositifolius is a potent immunostimulator and antileishmanial agent

Banerjee, S.; Mukherjee, N.; Gajbhiye, R. L.; Jaisankar, P.; Datta, S.; Das Saha, K.

10.1101/458653 — microbiology — Posted on 2018-10-31

103 Recombinant production of rabbit β-Nerve Growth Factor and its biological effect on rabbit sperm

Sanchez-Rodriguez, A.; Abad, P.; Arias-Alvarez, M.; Rebollar, P. G.; Bautista, J. M.; Lorenzo, P. L.; Garcia-Garcia, R. M.

10.1101/458612 — molecular biology — Posted on 2018-10-31

104 BmCncC/keap1-pathway is involved in high-temperature induced metamorphosis regulation of silkworm, Bombyx mori

Li, J.; Mao, T.; Lu, Z.; Li, M.; Qu, J.; Fang, Y.; Wang, H.; Chen, J.; Liu, Y.; Zhang, Z.; Hu, J.; Cheng, X.; Gu, Z.; Li, F.; Li, B.

10.1101/458620 — developmental biology — Posted on 2018-10-31

105 A short HBV RNA region induces RNR-R2 expression in non-cycling cells and in primary human hepatocytes

Ricardo-Lax, I.; Broennimann, K.; Adler, J.; Michailidis, E.; De Jong, Y. P.; Reuven, N.; Shaul, Y.

10.1101/458679 — microbiology — Posted on 2018-10-31

106 AMPK promotes Notch1 stability to potentiate hypoxia-induced breast cancer stemness and drug resistance

Lahiry, M.; Rangarajan, A.

10.1101/458489 — cancer biology — Posted on 2018-10-31

107 PRODIGY: personalized prioritization of driver genes

Dinstag, G.; Shamir, R.

10.1101/456723 — bioinformatics — Posted on 2018-10-31

108 Rediscovery and redescription of the endangered Hypostomus subcarinatus Castelnau, 1855 (Siluriformes: Loricariidae) from the rio Sao Francisco basin in Brazil, with comments on the urban water conservation

Zawadzki, C. H.; Penido, I. d. S.; Pessali, T. C.

10.1101/458604 — zoology — Posted on 2018-10-31

109 Soil-transmitted helminthiasis in children of a rural community part of a school-based deworming program: a cross-sectional study in the Peruvian Amazon

Errea, R. A.; Vasquez-Rios, G.; Calderon, M. L.; Siu, D.; Duque, K. R.; Juarez, L. H.; Gallegos, R.; Uriol, C.; Rondon, C. R.; Baca, K. P.; Fabian, R. J.; Canales, M.; Terashima, A.; Marcos, L. A.; Samalvides, F.

10.1101/458661 — epidemiology — Posted on 2018-10-31

110 The Hippo network kinase STK38 contributes to protein homeostasis by inhibiting BAG3-mediated autophagy

Klimek, C.; Wördehoff, J.; Jahnke, R.; Kathage, B.; Stadel, D.; Behrends, C.; Hergovich, A.; Höhfeld, J.

10.1101/458323 — cell biology — Posted on 2018-10-31

111 Effects of weight and height on hand selection: a low-cost virtual reality paradigm

McDermott, E. J.; Himmelbach, M.

10.1101/458588 — bioengineering — Posted on 2018-10-31

112 Dissociable effects of prediction and integration during language comprehension: Evidence from a large-scale study using brain potentials

Nieuwland, M. S.; Barr, D. J.; Bartolozzi, F.; Busch-Moreno, S.; Darley, E.; Donaldson, D. I.; Ferguson, H. J.; Fu, X.; Heyselaar, E.; Huettig, F.; Husband, E. M.; Ito, A.; Kazanina, N.; Kogan, V.; Kohut, Z.; Kulakova, E.; Meziere, D.; Politzer-Ahles, S.; Rousselet, G.; Rueschemeyer, S.-A.; Segaert, K.; Tuomainen, J.; Von Grebmer Zu Wolfsthurn, S.

10.1101/267815 — neuroscience — Posted on 2018-10-31

113 Deconvolution of single-cell multi-omics layers reveals regulatory heterogeneity

Liu, L.; Liu, C.; Quintero, A.; Wu, L.; Yuan, Y.; Wang, M.; Cheng, M.; Leng, L.; Xu, L.; Dong, G.; Li, R.; Liu, Y.; Wei, X.; Xu, J.; Chen, X.; Lu, H.; Chen, D.; Wang, Q.; Zhou, Q.; Lin, X.; Li, G.; Liu, S.; Wang, Q.; Wang, H.; Fink, J. L.; Gao, Z.; Liu, X.; Hou, Y.; Zhu, S.; Yang, H.; Ye, Y.; Lin, G.; Chen, F.; Herrmann, C.; Eils, R.; Shang, Z.; Xu, X.

10.1101/316208 — genomics — Posted on 2018-10-31

114 Combined linkage and association mapping of putative QTLs controlling black tea quality and drought tolerance traits

Koech, R.; Mose, R.; Kamunya, S.; Apostolides, Z.

10.1101/458596 — genomics — Posted on 2018-10-31

115 Lewy pathology in Parkinson’s disease consists of a crowded organellar, membranous medley

Shahmoradian, S. H.; Lewis, A. J.; Genoud, C.; Graff-Meyer, A.; Hench, J.; Moors, T.; Schweighauser, G.; Wang, J.; Goldie, K. N.; Suetterlin, R.; Castano-Diez, D.; Perez-Navarro, P.; Huisman, E.; Ipsen, S.; Ingrassia, A.; de Gier, Y.; Rozemuller, A. J. M.; Da Paepe, A.; Erny, J.; Staempfli, A.; Hoernschemeyer, J.; Grosserueschkamp, F.; Niedieker, D.; El-Mashtoly, S. F.; Quadri, M.; van IJcken, W. F. J.; Bonifati, V.; Gerwert, K.; Bohrmann, B.; Frank, S.; Britschgi, M.; Stahlberg, H.; van de Berg, W.; Lauer, M. E.

10.1101/137976 — neuroscience — Posted on 2018-10-31

116 Rethinking dopamine as generalized prediction error

Gardner, M. P. H.; Schoenbaum, G.; Gershman, S. J.

10.1101/239731 — neuroscience — Posted on 2018-10-31

117 Impact of mothers’ past experience and early-life stress on aggression and cognition in adult male mice

Reshetnikov, V.; Ryabushkina, Y.; Bondar, N.

10.1101/453084 — neuroscience — Posted on 2018-10-31

118 ENaC-mediated sodium influx drives NLRP3 inflammasome-dependent autoinflammation in Cystic Fibrosis

McDermott, M.; Scambler, T. E.; Jarosz-Griffiths, H. H.; Peckham, D. G.; Wong, C.; Lara-Reyna, S.; Holbrook, J.; Martinon, F.; Pathak, S.; Savic, S.

10.1101/458208 — immunology — Posted on 2018-10-31

119 Improved imputation of summary statistics for realistic settings

Rüeger, S.; McDaid, A.; Kutalik, Z.

10.1101/203927 — genomics — Posted on 2018-10-31

120 Reduced variation in Wolbachia density of larval stages in comparison with adults of Onchocerca volvulus: implications for clinical outcome of infection?

Armoo, S.; Doyle, S. R.; Hedtke, S. M.; Adjami, G. A.; Boakye, D. A.; Kuesel, A. C.; Osei-Atweneboana, M. Y.; Grant, W. N.

10.1101/458034 — molecular biology — Posted on 2018-10-31

121 SPRTN Protease and Checkpoint Kinase 1 Cross-Activation Loop Safeguards DNA Replication

Halder, S.; Torrecilla, I.; Burkhalter, M.; Popovic, M.; Fielden, J.; Vaz, B.; Oehler, J.; Pilger, D.; Lessel, D.; Wiseman, K.; Singh, A. N.; Vendrell, I.; Fischer, R.; Philipp, M.; Ramadan, K.

10.1101/458026 — cell biology — Posted on 2018-10-31

122 BitMapperBS: a fast and accurate read aligner for whole-genome bisulfite sequencing

Cheng, H.; Xu, Y.

10.1101/442798 — bioinformatics — Posted on 2018-10-31

123 Biochemical and physiological investigations on adenosine 5’ monophosphate deaminase from Plasmodium spp.

Nagappa, L. K.; Balaram, H.

10.1101/447789 — biochemistry — Posted on 2018-10-31

124 Genetics of human plasma lipidome: Understanding lipid metabolism and its link to diseases beyond traditional lipids

Tabassum, R.; Rämö, J. T.; Ripatti, P.; Koskela, J. T.; Kurki, M.; Karjalainen, J.; Hassan, S.; Nunez-Fontarnau, J.; Kiiskinen, T. T. J.; Söderlund, S.; Matikainen, N.; Gerl, M. J.; Surma, M. A.; Klose, C.; Stitziel, N. O.; Laivuori, H.; Havulinna, A. S.; Service, S. K.; Salomaa, V.; Pirinen, M.; FinnGen Project, ; Jauhiainen, M.; Daly, M. J.; Freimer, N. B.; Palotie, A.; Taskinen, M.-R.; Simons, K.; Ripatti, S.

10.1101/457960 — genetics — Posted on 2018-10-31

125 Risks of exposure to systemic insecticides in agricultural soil in Ontario, Canada for the hoary squash bee (Peponapis pruinosa) and other ground-nesting bee species

Chan, D. S. W.; Prosser, R. S.; Rodriguez-Gil, J. L.; Raine, N. E.

10.1101/434498 — ecology — Posted on 2018-10-31

126 Hereditary Pancreatitis Model by Blastocyst Complementation in Mouse

Asai, A.; Konno, M.; Koseki, J.; Kawamoto, K.; Arai, T.; Satoh, T.; Eguchi, H.; Mori, M.; Doki, Y.; Ishii, H.

10.1101/457978 — developmental biology — Posted on 2018-10-31

127 The Effect of Retro-inverse D-Amino Acid Aβ-peptides on Aβ- Fibril Formation

Xi, W.; Hansmann, U. H. E.

10.1101/457325 — biochemistry — Posted on 2018-10-31

128 Rewiring of a SMAD4 Protein Interaction Network by Breast Tumor Kinase Mediated Phosphorylation

Miah, S.; Banks, C.; Ogunbolude, Y.; Bagu, E.; MacAusland-Berg, J.; Saraf, A.; Hattem, G.; Kempf, C.; Sardiu, M.; Napper, S.; Florens, L.; Lukong, K. E.; Washburn, M. P.

10.1101/458190 — cancer biology — Posted on 2018-10-31

129 Blended Bioinformatics Training in Resource-Limited Settings: A case study of challenges and opportunities for implementation

Ahmed, A. E.; Awadallah, A. A.; Tagelsir, M. T.; Suliman, M. A.; Khalil, A. E.; Elsafi, H. M.; Hamdelnile, B. D.; Abdullatif, M.; Fadlelmola, F. M.

10.1101/431361 — scientific communication and education — Posted on 2018-10-30

130 The return of the trophic chain: fundamental vs realized interactions in a simple arthropod food web

Torres-Campos, I.; Magalhaes, S.; Moya-Larano, J.; Montserrat, M.

10.1101/324178 — ecology — Posted on 2018-10-30

131 Murine MPDZ-Linked Hydrocephalus is Caused by Hyperpermeability of the Choroid Plexus

Yang, J.; Simonneau, C.; Kilker, R.; Oakley, L.; Byrne, M.; Nichtova, Z.; Stefanescu, I.; Pardeep-Kumar, F.; Tripathi, S.; Londin, E.; Saugier-Veber, P.; Willard, B.; Thakur, M.; Pickup, S.; Smeyne, R.; Horowitz, A.

10.1101/446500 — neuroscience — Posted on 2018-10-30

132 A high-resolution map of non-crossover events reveals impacts of genetic diversity on mammalian meiotic recombination

Li, R.; Bitoun, E.; Altemose, N.; Davies, R. W.; Davies, B.; Myers, S. R.

10.1101/428987 — genetics — Posted on 2018-10-30

133 The nuclear RNAi factor, NRDE2, prevents the accumulation of DNA damage during mitosis in stressful growth conditions

Asundi, A.; Venkataramanan, S.; Caldas Cuellar, G.; Suzuki, A.; Floor, S. N.; Goga, A.; L'Etoile, N.

10.1101/428250 — cell biology — Posted on 2018-10-30

134 The hyperstability and composition of Giardias ventral disc highlights the remarkable versatility of microtubule organelles

Nosala, C.; Hagen, K. D.; Jones, K.; Loudermilk, R.; Nguyen, K.; Dawson, S. C.

10.1101/361105 — microbiology — Posted on 2018-10-30

135 IgA-deficient humans exhibit gut microbiota dysbiosis despite production of compensatory IgM

Catanzaro, J. R.; Strauss, J. D.; Bielecka, A.; Porto, A. F.; Lobo, F. M.; Urban, A.; Schofield, W. B.; Palm, N.

10.1101/446724 — immunology — Posted on 2018-10-30

136 Genetic variability and potential effects on clinical trial outcomes: perspectives in Parkinson’s disease

Leonard, H.; Blauwendraat, C.; Krohn, L.; Faghri, F.; Iwaki, H.; Furgeson, G.; Day-Williams, A. G.; Stone, D. J.; International Parkinson's Disease Genomics Consortium (IPDGC), ; Singleton, A. B.; Nalls, M. A.; Gan-Or, Z.

10.1101/427385 — genomics — Posted on 2018-10-30

137 Atlas of Subcellular RNA Localization Revealed by APEX-seq

Fazal, F. M.; Han, S.; Kaewsapsak, P.; Parker, K. R.; Xu, J.; Boettiger, A. N.; Chang, H. Y.; Ting, A. Y.

10.1101/454470 — cell biology — Posted on 2018-10-30

138 Automatic Single-Cell Discrimination by Cellular Appearance using Convolutional Neural Network

Matsuoka, Y.; Nakatsuka, R.; Fujioka, T.

10.1101/446823 — cell biology — Posted on 2018-10-30

139 An application of higher order multivariate cumulants in modelling of myoelectrical activity of porcine uterus during early pregnancy.

Domino, M.; Domino, K.; Gajewski, Z.

10.1101/443564 — bioinformatics — Posted on 2018-10-30

140 Pupillary dilations of mice performing a vibrotactile discrimination task reflect task engagement and response confidence.

Ganea, D. A.; Bexter, A.; Guenther, M.; Garderes, P. M.; Kampa, B. M.; Haiss, F.

10.1101/444919 — neuroscience — Posted on 2018-10-30

141 Glutamate uptake and release at single adult corticostriatal synapses of normal and Huntington mice

Dvorzhak, A.; Helassa, N.; Torok, K.; Schmitz, D.; Grantyn, R.

10.1101/455758 — neuroscience — Posted on 2018-10-30

142 Systemic inflammation following long-term successful antiretroviral therapy in people living with HIV (PLHIV)

Babu, H.; Ambikan, A. T.; Gabriel, E. E.; Svensson Akusjarvi, S.; Muppani, N. R.; Sperk, M.; Cheedarla, N.; Palaniapan, A. N.; Sridhar, R.; Sundaraj, V.; Tripathy, S. P.; Nowak, P.; Hanna, L. E.; Neogi, U.

10.1101/418012 — immunology — Posted on 2018-10-30

143 Eco-evolutionary processes underlying early warning signals of population declines

Baruah, G.; Clements, C. F.; Ozgul, A.

10.1101/422915 — ecology — Posted on 2018-10-30

144 Intact mast cell content during mild head injury is required for the development of latent pain sensitization - implications for mechanisms underlying posttraumatic headache

Bree, D.; Levy, D.

10.1101/392928 — neuroscience — Posted on 2018-10-30

145 Machine learning algorithms for systematic reviews: reducing workload in a preclinical review of animal studies and reducing human screening error

Bannach-Brown, A.; Przybyła, P.; Thomas, J.; Rice, A. S. C.; Ananiadou, S.; Liao, J.; Macleod, M. R.

10.1101/255760 — neuroscience — Posted on 2018-10-30

146 Experimental demonstration that screening can enable the environmental recruitment of a defensive microbiome

Innocent, T.; Holmes, N.; Al Bassam, M.; Schiott, M.; Scheuring, I.; Wilkinson, B.; Hutchings, M. I.; Boomsma, J. J.; Yu, D.

10.1101/375634 — microbiology — Posted on 2018-10-30

147 DNA methylation links prenatal smoking exposure to later life health outcomes in offspring

Wiklund, P.; Karhunen, V.; Richmond, R.; Rodriguez, A.; De Silva, M.; Wielscher, M.; Rezwan, F. I.; Richardson, T. G.; Veijola, J.; Heinz-Herzig, K.; Holloway, J. W.; Relton, C. L.; Sebert, S.; Jarvelin, M.-R.

10.1101/428896 — epidemiology — Posted on 2018-10-30

148 Infectious Entry of Merkel Cell Polyomavirus

Becker, M.; Dominguez, M.; Greune, L.; Soria-Martinez, L.; Pfleiderer, M.; Schowalter, R. M.; Buck, C. B.; Blaum, B. S.; SCHMIDT, M. A.; Schelhaas, M.

10.1101/456673 — microbiology — Posted on 2018-10-30

149 Complementary networks of cortical somatostatin interneurons enforce layer specific control

Naka, A.; Veit, J.; Shababo, B.; Chance, R. K.; Risso, D.; Stafford, D.; Snyder, B.; Egladyous, A.; Chu, D.; Sridharan, S.; Paninski, L.; Ngai, J.; Adesnik, H.

10.1101/456574 — neuroscience — Posted on 2018-10-30

150 Genetic Heterogeneity Profiling by Single Cell RNA Sequencing

Zhou, Z.; Zhang, N. R.

10.1101/457622 — bioinformatics — Posted on 2018-10-30

151 Exit of human cutaneous resident memory CD4 T cells that enter the circulation and seed distant skin sites

Klicznik, M. M.; Morawski, P. A.; Höllbacher, B.; Varkhande, S.; Motley, S.; Rosenblum, M. D.; Long, S. A.; Brachtl, G.; Duhen, T.; Campbell, D.; Gratz, I. K.

10.1101/361758 — immunology — Posted on 2018-10-30

152 The Mechanical Power of Protein Folding

Eckels, E. C.; Haldar, S.; Tapia-Rojo, R.; Rivas Pardo, J. A.; Fernandez, J. M.

10.1101/383711 — biophysics — Posted on 2018-10-30

153 Computational Geometry for Modeling Neural Populations: from Visualization to Simulation

de Kamps, M.; Elle Lepperod, M.; Lai, Y. M.

10.1101/275412 — neuroscience — Posted on 2018-10-30

154 Memory deficits in males and females long after subchronic immune challenge

Tchessalova, D.; Tronson, N. C.

10.1101/379339 — neuroscience — Posted on 2018-10-30

155 Scedar: a scalable Python package for single-cell RNA-seq exploratory data analysis

Zhang, Y.; Taylor, D. M.

10.1101/375196 — bioinformatics — Posted on 2018-10-30

156 Sunbeam: an extensible pipeline for analyzing metagenomic sequencing experiments

Clarke, E. L.; Taylor, L. J.; Zhao, C.; Connell, J.; Bushman, F. D.; Bittinger, K.

10.1101/326363 — bioinformatics — Posted on 2018-10-30

157 GREIN: An interactive web platform for re-analyzing GEO RNA-seq data

Al Mahi, N.; Najafabadi, M. F.; Pilarczyk, M.; Kouril, M.; Medvedovic, M.

10.1101/326223 — bioinformatics — Posted on 2018-10-30

158 Accumulating computational resource usage of genomic data analysis workflow to optimize cloud computing instance selection

Ohta, T.; Tanjo, T.; Ogasawara, O.

10.1101/456756 — bioinformatics — Posted on 2018-10-30

159 PRODIGY: personalized prioritization of driver genes

Dinstag, G.; Shamir, R.

10.1101/456723 — bioinformatics — Posted on 2018-10-30

160 Charting a tissue from single-cell transcriptomes

Nitzan, M.; Karaiskos, N.; Friedman, N.; Rajewsky, N.

10.1101/456350 — systems biology — Posted on 2018-10-30

161 Autistic traits, resting-state connectivity and absolute pitch in professional musicians: shared and distinct neural features

Wenhart, T.; Bethlehem, R. A. I.; Baron-Cohen, S.; Altenmueller, E.

10.1101/456913 — neuroscience — Posted on 2018-10-30

162 Are veterinary clinical manuscripts published more slowly than medical or scientific counterparts? A comparative observational study

Rishniw, M.; White, M. E.

10.1101/456327 — scientific communication and education — Posted on 2018-10-30

163 Genome-wide association and functional studies identify 46 novel loci for alcohol consumption and suggest common genetic mechanisms with neuropsychiatric disorders

Evangelou, E.; Gao, H.; Chu, C.; Ntritsos, G.; Blakeley, P.; Butts, A. R.; Pazoki, R.; Suzuki, H.; Koskeridis, F.; Yiorkas, A. M.; Karaman, I.; Elliott, J.; Aeschbacher, S.; Bartz, T. M.; Baumeister, S. E.; Braund, P. S.; Brown, M. R.; Brody, J. A.; Clarke, T.-K.; Dimou, N.; Faul, J. D.; Homuth, G.; Jackson, A. U.; Kentistou, K. A.; Joshi, P. K.; Lemaitre, R. N.; Lind, P. A.; Lyytikainen, L.-P.; Mangino, M.; Milaneschi, Y.; Nelson, C. P.; Nolte, I. M.; Perala, M.-M.; Polasek, O.; Porteous, D.; Ratliff, S. M.; Smith, J. A.; Stancakova, A.; Teumer, A.; Tuominen, S.; Theriault, S.; Vangipurapu, J

10.1101/453332 — genetics — Posted on 2018-10-30

164 Analysing protein post-translational modform regions by linear programming

Agarwal, D.; Fellers, R. T.; Early, B. P.; Lu, D.; DeHart, C. J.; Compton, P. D.; Thomas, P. M.; Lahav, G.; Kelleher, N. L.; Gunawardena, J.

10.1101/456640 — systems biology — Posted on 2018-10-30

165 Resource misallocation as a mediator of fitness costs in antibiotic resistance.

Trauner, A.; Banaei-Esfahani, A.; Gygli, S. M.; Warmer, P.; Feldmann, J.; Shafieechashmi, S.; Eschbach, K.; Zampieri, M.; Borrell, S.; Collins, B. C.; Beisel, C.; Aebersold, R.; Gagneux, S.

10.1101/456434 — microbiology — Posted on 2018-10-30

166 Effect of a Sepsis Prediction Algorithm on Patient Mortality, Length of Stay, and Readmission

Burdick, H.; Pino, E.; Gabel-Comeau, D.; McCoy, A.; Gu, C.; Roberts, J.; Slots, J.; Saber, N.; Hoffman, J.; Das, R.

10.1101/457465 — bioinformatics — Posted on 2018-10-30

167 Moana: A robust and scalable cell type classification framework for single-cell RNA-Seq data

Wagner, F.; Yanai, I.

10.1101/456129 — bioinformatics — Posted on 2018-10-30

168 CCA1 and ATAF2 differentially suppress cytochrome P450-mediated brassinosteroid inactivation in Arabidopsis

Peng, H.; Neff, M. M.

10.1101/457200 — plant biology — Posted on 2018-10-30

169 A transgenic zebrafish line for in vivo visualisation of neutrophil myeloperoxidase

Buchan, K. D.; de Jong, N. W.; van Gent, M.; Kolata, J.; Foster, S. J.; Van Strijp, J. A. G. A.; Renshaw, S. A.

10.1101/456541 — immunology — Posted on 2018-10-30

170 Accurate prediction of cell composition, age, smoking consumption and infection serostatus based on blood DNA methylation profiles

Bergstedt, J.; Urrutia, A.; Duffy, D.; Albert, M. L.; Quintana-Murci, L.; Patin, E.

10.1101/456996 — genomics — Posted on 2018-10-30

171 Detecting spatial dynamics of range expansions with geo-referenced genome-wide SNP data and the geographic spectrum of shared alleles

Alvarado-Serrano, D. F.; Hickerson, M. J.

10.1101/457556 — evolutionary biology — Posted on 2018-10-30

172 Nature representativeness in South American protected areas: Country contrasts and conservation priorities

Baldi, G.; Schauman, S. A.; Texeira, M.; Marinaro, S.; Martin, O. A.; Gandini, P.; Jobbagy, E. G.

10.1101/456558 — ecology — Posted on 2018-10-30

173 Design Guidelines For Sequestration Feedback Networks

Baetica, A.-A.; Leong, Y. P.; Olsman, N.; Murray, R. M.

10.1101/455493 — synthetic biology — Posted on 2018-10-30

174 JHU-2545 Selectively Shields Salivary Glands and Kidneys during PSMA-Targeted Radiotherapy

Nedelcovych, M. T.; Dash, R. P.; Wu, Y.; Choi, E. Y.; Lapidus, R. S.; Majer, P.; Abou, D.; Penet, M.-F.; Nikolopoulou, A.; Amor-Coarasa, A.; Babich, J.; Thorek, D. L.; Rais, R.; Kratochwil, C.; Slusher, B. S.

10.1101/457085 — pharmacology and toxicology — Posted on 2018-10-30

175 Genome wide association study of hippocampal subfield volume in PTSD cases and trauma-exposed controls

Morey, R. A.; Garrett, M. E.; Stevens, J. S.; Clarke, E.; Haswell, C. C.; van Rooij, S. J. H.; Fani, N.; Lori, A.; VA Mid-Atlantic MIRECC Workgroup, ; Marx, C. E.; Beckham, J. C.; McCarthy, G.; Hauser, M. A.; Ashley-Koch, A. E.

10.1101/456988 — neuroscience — Posted on 2018-10-30

176 Complementary subnetworks of cortical somatostatin interneurons

Naka, A.; Shababo, B.; Snyder, B.; Egladyous, A.; Sridharan, S.; Paninski, L.; Adesnik, H.

10.1101/456574 — neuroscience — Posted on 2018-10-30

177 Brain tissue segmentation based on MP2RAGE multi-contrast images in 7 T MRI

Choi, U.-S.; Kawaguchi, H.; Matsuoka, Y.; Kober, T.; Kida, I.

10.1101/455576 — neuroscience — Posted on 2018-10-30

178 Pregnancy-associated plasma protein-aa promotes neuron survival by regulating mitochondrial function

Alassaf, M.; Daykin, E.; Wolman, M. A.

10.1101/456632 — neuroscience — Posted on 2018-10-30

179 Neutralization of a Distributed Coulombic Switch Precisely Tunes Reflectin Assembly

Levenson, R.; Bracken, C.; Sharma, C.; Santos, J.; Arata, C.; Kohl, P.; Li, Y.; Morse, D. E.

10.1101/456442 — molecular biology — Posted on 2018-10-30

180 A diagnostic multiplex PCR scheme for identification of plant-associated bacteria of the genus Pantoea

Kini, K.; Agnimonhan, R.; Dossa, R.; Silue, D.; Koebnik, R.

10.1101/456806 — microbiology — Posted on 2018-10-30

181 capC-MAP: A Software Package for Analysis of Capture-C data

Buckle, A.; Gilbert, N.; Marenduzzo, D.; Brackley, C. A.

10.1101/456160 — genomics — Posted on 2018-10-30

182 City-wide metagenomics uncover antibiotic resistance reservoirs in urban beach and sewage waters

Fresia, P.; Antelo, V.; Salazar, C.; Giménez, M.; D'Alessandro, B.; Afshinnekoo, E.; Mason, C.; Gonnet, G.; Iraola, G.

10.1101/456517 — genomics — Posted on 2018-10-30

183 Genetic Consequences of Social Stratification in Great Britain

Abdellaoui, A.; Hugh-Jones, D.; Kemper, K. E.; Holtz, Y.; Nivard, M. G.; Veul, L.; Yengo, L.; Zietsch, B. P.; Frayling, T. M.; Wray, N.; Yang, J.; Verweij, K. J. H.; Visscher, P. M.

10.1101/457515 — genetics — Posted on 2018-10-30

184 Robust methods for detecting convergent shifts in evolutionary rates

Partha, R.; Kowalczyk, A.; Clark, N. L.; Chikina, M.

10.1101/457309 — evolutionary biology — Posted on 2018-10-30

185 SIP: An Interchangeable Pipeline for scRNA-seq Data Processing

Chen, S.; Wei, Z.; Chen, Y.; Hua, K.; Zhang, W.; Liu, C.; Gao, H.; Sun, H.; Wang, Z.; Yin, Q.; Chen, S.; Song, S.; Feng, C.; Lu, H.; Jiang, R.; Wang, X.; Gu, J.; Zhang, X.

10.1101/456772 — bioinformatics — Posted on 2018-10-30

186 Bifunctional Substrate Activation via an Arginine Residue Drives Catalysis in Chalcone Isomerases

Burke, J. R.; LaClair, J. J.; Philippe, R. N.; Pabis, A.; Jez, J. M.; Cortina, G. A.; Kaltenbach, M.; Bowman, M. E.; Louie, G. V.; Woods, K. B.; Nelson, A. T.; Tawfik, D. S.; Kamerlin, S. C. L.; Noel, J. P.

10.1101/457440 — biochemistry — Posted on 2018-10-30

187 Intersubject MVPD: Empirical Comparison of fMRI Denoising Methods for Connectivity Analysis

Li, Y.; Saxe, R.; Anzellotti, S.

10.1101/456970 — neuroscience — Posted on 2018-10-30

188 The more you know: Investigating why adults get a bigger memory boost from semantic congruency than children

Wang, W.-C.; Ghetti, S.; Brod, G.; Bunge, S. A.

10.1101/456624 — neuroscience — Posted on 2018-10-30

189 Precise optical probing of perceptual detection

Lerman, G. M.; Gill, J. V.; Rinberg, D.; Shoham, S.

10.1101/456764 — neuroscience — Posted on 2018-10-30

190 An infant mouse model of influenza virus transmission demonstrates the role of virus-specific shedding, humoral immunity, and sialidase expression by colonizing Streptococcus pneumoniae.

Ortigoza, M. B.; Blaser, S.; Zafar, M. A.; Hammond, A.; Weiser, J. N.

10.1101/456665 — microbiology — Posted on 2018-10-30

191 Resolving structural diversity of Carbapenemase-producing gram-negative bacteria using single molecule sequencing

Noll, N.; Urich, E.; Wüthrich, D.; Hinic, V.; Egli, A.; Neher, R.

10.1101/456897 — microbiology — Posted on 2018-10-30

192 Age-dependent changes in transcription factor FOXO targeting in Drosophila melanogaster

Birnbaum, A.; Tatar, M.; Bai, H.

10.1101/456426 — genomics — Posted on 2018-10-30

193 scMetric: An R package of metric learning and visualization for single-cell RNA-seq data

Chen, W.; Zhang, X.

10.1101/456814 — bioinformatics — Posted on 2018-10-30

194 Identification of transcription factors regulating senescence in wheat through gene regulatory network modelling

Borrill, P.; Harrington, S. A.; Simmonds, J.; Uauy, C.

10.1101/456749 — plant biology — Posted on 2018-10-30

Elmore, L. C.; Rosenberg, A.; DeAngelis, G. C.; Angelaki, D. E.

10.1101/457531 — neuroscience — Posted on 2018-10-30

196 Mapping native R-loops genome-wide using a targeted nuclease approach

Yan, Q.; Shields, E. J.; Bonasio, R.; Sarma, K.

10.1101/457226 — molecular biology — Posted on 2018-10-30

197 Changes in the Active, Dead, and Dormant Microbial Community Structure Across a Pleistocene Permafrost Chronosequence

Burkert, A.; Douglas, T. A.; Waldrop, M. P.; Mackelprang, R.

10.1101/457259 — microbiology — Posted on 2018-10-30

198 Biodiversity trends are stronger in marine than terrestrial assemblages

Blowes, S.; Supp, S.; Antao, L.; Bates, A.; Bruelheide, H.; Chase, J.; Moyes, F.; Magurran, A.; McGill, B.; Myers-Smith, I.; Winter, M.; Bjorkman, A.; Bowler, D.; Byrnes, J. E.; Gonzalez, A.; Hines, J.; Isbell, F.; Jones, H.; Navarro, L.; Thompson, P.; Vellend, M.; Waldock, C.; Dornelas, M.

10.1101/457424 — ecology — Posted on 2018-10-30

199 Quantitative single-cell splicing analysis reveals an ‘economy of scale’ filter for gene expression

Ding, F.; Elowitz, M.

10.1101/457432 — cell biology — Posted on 2018-10-30

200 Nanopore sequencing enables high-resolution analysis of resistance determinants and mobile elements in the human gut microbiome

Bertrand, D.; Shaw, J.; Narayan, M.; Ng, H. Q. A.; Kumar, S.; Li, C.; Dvornicic, M.; Paliska Soldo, J.; Kho, J. Y.; Ng, O. T.; Barkham, T.; Young, B.; Marimuthu, K.; Chng, K. R.; Sikic, M.; Nagarajan, N.

10.1101/456905 — bioinformatics — Posted on 2018-10-30

201 On the inference speed and video-compression robustness of DeepLabCut

Mathis, A.; Warren, R. A.

10.1101/457242 — animal behavior and cognition — Posted on 2018-10-30

202 Deep reinforcement learning for the control of bacterial populations in bioreactors

Treloar, N. J.; Fedorec, A. J. H.; Barnes, C. P.

10.1101/457366 — synthetic biology — Posted on 2018-10-30

203 Adjusting for Variable Brain Coverage in Voxel-Based fMRI Meta-Analysis

Cutler, J.; Radua, J.; Campbell-Meiklejohn, D.

10.1101/457028 — neuroscience — Posted on 2018-10-30

204 Spatial signature of white matter hyperintensities in stroke patients

Schirmer, M. D.; Giese, A.-K.; Fotiadis, P.; Etherton, M. R.; Cloonan, L.; Viswanathan, A.; Greenberg, S. M.; Wu, O.; Rost, N. S.

10.1101/457374 — neuroscience — Posted on 2018-10-30

205 Sub-millimeter fMRI reveals multiple topographical digit representations that form action maps in human motor cortex

Huber, L.; Finn, E. S.; Handwerker, D. A.; Boenstrup, M.; Glen, D.; Kashyap, S.; Ivanov, D.; Petridou, N.; Marrett, S.; Goense, J.; Poser, B.; Bandettini, P. A.

10.1101/457002 — neuroscience — Posted on 2018-10-30

206 Utilizing Transcranial Direct Current Stimulation to Enhance Laparoscopic Technical Skills Training: A Randomized Controlled Trial

Cox, M. L.; Deng, Z.-D.; Palmer, H.; Watts, A.; Beynell, L.; Young, J. R.; Lisanby, S. H.; Migaly, J.; Appelbaum, L. G.

10.1101/455329 — clinical trials — Posted on 2018-10-30

207 SNP2SIM: A modular workflow for standardizing molecular simulation and functional analysis of protein variants

McCoy, M. D.; Shivakumar, V.; Nimmagadda, S.; Jafri, M. S.; Madhavan, S.

10.1101/457192 — bioinformatics — Posted on 2018-10-30

208 baRcodeR with PyTrackDat: Open-source labelling and tracking of biological samples for repeatable science

Wu, Y. I.; Lougheed, D.; Lougheed, S. C.; Moniz, K.; Walker, V. K.; Colautti, R. I.

10.1101/457051 — bioinformatics — Posted on 2018-10-30

209 Optimized ICA-based removal of ocular EEG artifacts from free viewing experiments

Dimigen, O.

10.1101/446955 — neuroscience — Posted on 2018-10-30

210 Outpatient prescribing of four major antibiotic classes and prevalence of antimicrobial resistance in US adults

Goldstein, E.; MacFadden, D. R.; Lee, R. S.; Lipsitch, M.

10.1101/456244 — epidemiology — Posted on 2018-10-30

211 The proteasome biogenesis regulator Rpn4 cooperates with the unfolded protein response to promote resistance to endoplasmic reticulum stress

Schmidt, R. M.; Schuck, S.

10.1101/457077 — cell biology — Posted on 2018-10-30

212 Reducing RF-Induced Heating Near Implanted Leads Through High-Dielectric Capacitive Bleeding of Current (CBLOC)

Golestanirad, L.; Angelone, L. M.; Kirsch, J.; Downs, S.; Keil, B.; Bonmassar, G.; Wald, L. L.

10.1101/456533 — biophysics — Posted on 2018-10-30

213 Nucleosome positions alone determine micro-domains in yeast chromosomes.

Wiese, O.; Marenduzzo, D.; Brackley, C. A.

10.1101/456202 — biophysics — Posted on 2018-10-30

214 The Markov link method: a nonparametric approach to combine observations from multiple experiments

Loper, J.; Bakken, T.; Sumbul, U.; Murphy, G.; Zeng, H.; Blei, D.; Blei, D.

10.1101/457283 — bioinformatics — Posted on 2018-10-30

215 Reconstructing and characterizing focal amplifications in cancer using AmpliconArchitect

Deshpande, V.; Luebeck, J.; Bakhtiari, M.; Nguyen, N.-P. D.; Turner, K. M.; Schwab, R.; Carter, H.; Mischel, P. S.; Bafna, V.

10.1101/457333 — bioinformatics — Posted on 2018-10-30

216 Transcriptional profiling of isogenic Friedreich ataxia induced pluripotent stem cell-derived neurons

Lai, J.-I.; Nachun, D.; Petrosyan, L.; Throesch, B.; Campau, E.; Gao, F.; Baldwin, K. K.; Coppola, G.; Gottesfeld, J. M.; Soragni, E.

10.1101/457093 — neuroscience — Posted on 2018-10-30

217 A Human-Machine Coupled System for Efficient Sleep Spindle Detection by Iterative Revision

Bi, D.

10.1101/454488 — neuroscience — Posted on 2018-10-30

218 Genomic evidence supports a clonal diaspora model for metastases of esophageal adenocarcinoma

Noorani, A.; Goddard, M.; Crawte, J.; Alexandrov, L. B.; Li, X.; Secrier, M.; Eldridge, M. D.; Bower, L.; Weaver, J.; Lao-Sirieix, P.; Martincorena, I.; Debiram-Beecham, I.; Grehan, N.; Macrae, S.; Malhotra, S.; Miremadi, A.; Thomas, T.; Galbraith, S.; Petersen, L.; Preston, S.; Gilligan, D.; Hindmarsh, A.; Hardwick, R.; OCCAMS Consortium, ; Stratton, M. R.; Wedge, D. C.; Fitzgerald, R. C.

10.1101/454306 — genomics — Posted on 2018-10-30

219 A new massively parallel nanoball sequencing platform for whole exome research

Xu, Y.; Lin, Z.; Tang, C.; Tang, Y.; Cai, Y.; Zhong, H.; Wang, X.; Zhang, W.; Xu, C.; Wang, J.; Wang, J.; Yang, H.; Yang, L.; Gao, Q.

10.1101/451641 — genomics — Posted on 2018-10-30

220 Comprehensive assessment of multiple biases in small RNA sequencing reveals significant differences in the performance of widely used methods

Wright, C.; Rajpurohit, A.; Burke, E. E.; Williams, C.; Collado-Torres, L.; Kimos, M.; Brandon, N. J.; Cross, A. J.; Jaffe, A. E.; Weinberger, D. R.; Shin, J. H.

10.1101/445437 — genomics — Posted on 2018-10-30

221 Clean lighting leads to decreased indoor air pollution and improved respiratory health in rural Uganda

Aiden, A. P.; Nyakato, V. N.; Mwine, N.; Aiden, E. L.

10.1101/455097 — epidemiology — Posted on 2018-10-30

222 The Molecular Basis of Monopolin Recruitment to the Kinetochore

Plowman, R.; Singh, N.; Duro, E.; Payan, A.; Corbett, K. D.; Marston, A. L.

10.1101/456798 — cell biology — Posted on 2018-10-30

223 A stochastic model of corneal epithelium maintenance and recovery following perturbation

Moraki, E.; Grima, R.; Painter, K.

10.1101/456947 — biophysics — Posted on 2018-10-30

224 Robust, reproducible, and economical phosphopeptide enrichment using calcium titanate

Ahmed, A.; Raja, V. J.; Cavaliere, P.; Dephoure, N.

10.1101/457275 — biochemistry — Posted on 2018-10-30

225 Cell-extrinsic mechanical forces restore neutrophil polarization in the absence of branched actin assembly

Graziano, B. R.; Town, J. P.; Nagy, T. L.; Fosnaric, M.; Penic, S.; Iglic, A.; Kralj-Iglic, V.; Gov, N.; Diz-Munoz, A.; Weiner, O. D.

10.1101/457119 — cell biology — Posted on 2018-10-30

226 Inference of tumor cell-specific transcription factor binding from cell-free DNA

Ulz, P.; Perakis, S.; Zhou, Q.; Moser, T.; Belic, J.; Wölfler, A.; Zebisch, A.; Gerger, A.; Pristauz, G.; Petru, E.; Schimek, M. G.; Geigl, J. B.; Bauernhofer, T.; Sill, H.; Bock, C.; Heitzer, E.; Speicher, M. R.

10.1101/456681 — cancer biology — Posted on 2018-10-30

227 Eliminating effects of particle adsorption to the air/water interface in single-particle cryo-electron microscopy: Bacterial RNA polymerase and CHAPSO

Chen, J.; Noble, A. J.; Kang, J. Y.; Darst, S.

10.1101/457267 — biophysics — Posted on 2018-10-30

228 Optimal strategies for inhibition of protein aggregation

Michaels, T. C.; Weber, C. A.; Mahadevan, L.

10.1101/456590 — biophysics — Posted on 2018-10-30

229 Loss of mitochondrial proline catabolism depletes FAD, impairing sperm function, and male reproductive advantage

Yen, C.-A.; Ruter, D. L.; Mih, N.; Pang, S.; Curran, S. P.

10.1101/456863 — cell biology — Posted on 2018-10-30

230 Resolving Tumour Clonal Heterogeneity and Spatial Complexity using Nuclear Tandem Epitope Protein (nTEP) Barcoding

Gill, M. B.; Koplev, S.; Machel, A. C.; Miller, M. L.

10.1101/456855 — cancer biology — Posted on 2018-10-30

231 Learning mechanism of chromatin domain formation with big data

Xie, W. J.; Zhang, B.

10.1101/456525 — biophysics — Posted on 2018-10-30

232 The importance and adaptive value of life history evolution for metapopulation dynamics

Bonte, D.; Bafort, Q.

10.1101/179234 — evolutionary biology — Posted on 2018-10-30

233 Impact of Physical and Cognitive Exertion on Cognitive Control

Davranche, K.; Tempest, G. D.; Gajdos, T.; Radel, R.

10.1101/453464 — neuroscience — Posted on 2018-10-30

234 Feedforward and feedback processing during figure-ground perception in mice

Schnabel, U. H.; Kirchberger, L.; van Beest, E.; Mukherjee, S.; Barsegyan, A.; Lorteije, J. A. M.; van der Togt, C.; Self, M. W.; Roelfsema, P. R.

10.1101/456459 — neuroscience — Posted on 2018-10-30

235 Interpretable classification of Alzheimer’s disease pathologies with a convolutional neural network pipeline

Tang, Z.; Chuang, K. V.; DeCarli, C.; Jin, L.-W.; Beckett, L.; Keiser, M. J.; Dugger, B. N.

10.1101/454793 — pathology — Posted on 2018-10-30

236 Eigenvector-based community detection for identifying information hubs in neuronal networks

Clark, R. A.; Macdonald, M.

10.1101/457143 — neuroscience — Posted on 2018-10-30

237 Testing the Regulatory Consequences of 1,049 Schizophrenia Associated Variants With a Massively Parallel Reporter Assay

Myint, L.; Wang, R.; Boukas, L.; Hansen, K. D.; Goff, L. A.; Avramopoulos, D.

10.1101/447557 — genetics — Posted on 2018-10-30

238 The role of fibroblast growth factor signalling in Echinococcus multilocularis development and host-parasite interaction

Förster, S.; Koziol, U.; Schäfer, T.; Duvoisin, R.; Cailliau, K.; Vanderstraete, M.; Dissous, C.; Brehm, K.

10.1101/457168 — zoology — Posted on 2018-10-30

239 Coherent Transcription Factor Target Networks Illuminate Epithelial Remodelling and Oncogenic Notch

Overton, I. M.; Sims, A. H.; Owen, J. A.; Heale, B.; Ford, M. J.; Lubbock, A. L. R.; Pairo-Castineira, E.; Essafi, A.

10.1101/455709 — systems biology — Posted on 2018-10-30

240 CropSurveyor: a scalable open-source experiment management system for distributed plant phenotyping and IoT-based crop management

Reynolds, D.; Ball, J.; Bauer, A.; Griffiths, S.; Zhou, J.

10.1101/451120 — plant biology — Posted on 2018-10-30

241 Functional dissection of the ARGONAUTE7 promoter

Hoyer, J. S.; Pruneda-Paz, J. L.; Breton, G.; Hassert, M. A.; Holcomb, E. E.; Fowler, H.; Bauer, K. M.; Mreen, J.; Kay, S. A.; Carrington, J. C.

10.1101/392910 — plant biology — Posted on 2018-10-30

242 Characterization of a novel intratracheal aerosol challenge model of Brucella melitensis in guinea pigs

Hensel, M.; Garcia-Gonzalez, D. G.; Chaki, S. P.; Samuel, J.; Arenas-Gamboa, A. M.

10.1101/457184 — microbiology — Posted on 2018-10-30

243 Retinotopic maps of visual space in the human cerebellum

van Es, D. M.; van der Zwaag, W.; Knapen, T.

10.1101/455170 — neuroscience — Posted on 2018-10-30

244 Learning to synchronize: How biological agents can couple neural task modules for dealing with the stability-plasticity dilemma

Verbeke, P.; Verguts, T.

10.1101/457150 — neuroscience — Posted on 2018-10-30

245 Gaussian curvature and the budding kinetics of enveloped viruses

Hagan, M. F.; Bruinsma, R.; Dharmavaram, S.; She, S. B.; Lazaro, G.

10.1101/457135 — biophysics — Posted on 2018-10-30

246 Attenuation of chronic antiviral T cell responses through constitutive COX2-dependent prostanoid synthesis by lymph node fibroblasts

Schaeuble, K.; Cannelle, H.; Favre, S.; Huang, H.-Y.; Oberle, S.; Zehn, D.; Luther, S. A.

10.1101/457127 — immunology — Posted on 2018-10-30

247 High-Risk Human Papillomavirus Oncogenes Disrupt the Fanconi Anemia DNA repair Pathway by Impairing Localization and De-ubiquitination of FancD2

Khanal, S.; Galloway, D. A.

10.1101/457176 — cancer biology — Posted on 2018-10-30

248 Functional connectivity alterations of the temporal lobe and hippocampus in semantic dementia and Alzheimer’s disease

Schwab, S.; Afyouni, S.; Chen, Y.; Han, Z.; Guo, Q.; Dierks, T.; Wahlund, L.-O.; Grieder, M.

10.1101/322131 — neuroscience — Posted on 2018-10-30

249 Image content is more important than Bouma’s Law for scene metamers

Wallis, T. S. A.; Funke, C. M.; Ecker, A. S.; Gatys, L. A.; Wichmann, F. A.; Bethge, M.

10.1101/378521 — neuroscience — Posted on 2018-10-30

250 Encoding of 3D head direction information in the human brain

Kim, M.; Maguire, E. A.

10.1101/335976 — neuroscience — Posted on 2018-10-30

251 Immuno-genomic Pan-cancer Landscape Reveals Diverse Immune Escape Mechanisms and Immuno-Editing Histories

Mizuno, S.; Yamaguchi, R.; Hasegawa, T.; Hayashi, S.; Fujita, M.; Zhang, F.; Koh, Y.; Lee, S.-Y.; Yoon, S.-S.; Shimizu, E.; Komura, M.; Fujimoto, A.; Nagai, M.; Kato, M.; Liang, H.; Miyano, S.; Zhang, Z.; Nakagawa, H.; Imoto, S.

10.1101/285338 — genomics — Posted on 2018-10-30

252 Analyzing the symmetrical arrangement of structural repeats in proteins with CE-Symm

Bliven, S. E.; Lafita, A.; Rose, P. W.; Capitani, G.; Prlic, A.; Bourne, P.

10.1101/297960 — bioinformatics — Posted on 2018-10-30

253 Conformational dynamics of photosynthetic Light-Harvesting Complex II in a native membrane environment

Azadi-Chegeni, F.; Ward, M. E.; Perin, G.; Simionato, D.; Morosinotto, T.; Baldus, M.; Pandit, A.

10.1101/288860 — biophysics — Posted on 2018-10-30

254 Genetic Association of The CYP7A1 Gene with Duck Lipid Traits

Zhang, Y. Y.; Qin, Y. Y.; Luo, H. L.; Wu, L.

10.1101/456475 — genetics — Posted on 2018-10-30

255 Generation and characterization of iPSCs from human embryonic dermal fibroblasts of a healthy donor from Siberian population

Grigor'eva, E.; Malankhanova, T.; Surumbayeva, A.; Minina, J.; Kizilova, E.; Lebedev, I.; Malakhova, A.; Zakian, S.

10.1101/455535 — cell biology — Posted on 2018-10-30

256 Early detection of impending cryostorage tank failure using a weight-based monitoring system

Michaelson, Z. P.; Bondalapati, S. T.; Amrane, S.; Prosser, R. W.; Hill, D. M.; Gaur, P.; Recio, M.; Travassos, D. E.; Wolfkamp, M. D.; Sadowy, S.; Thomas, C.; Forman, E. J.; Williams, Z.

10.1101/455311 — developmental biology — Posted on 2018-10-30

257 Fusion of DARPin to aldolase enables visualization of small protein by cryoEM

Yao, Q.; Weaver, S. J.; Mock, J.-Y.; Jensen, G. J.

10.1101/455063 — biophysics — Posted on 2018-10-30

258 Ring shape Golden Ratio multicellular structures are algebraically afforded by asymmetric mitosis and one to one cell adhesion

Butler, W.; Kinane, T. B.

10.1101/450528 — systems biology — Posted on 2018-10-29

259 Cytoscape stringApp: Network analysis and visualization of proteomics data

Doncheva, N. T.; Morris, J. H.; Gorodkin, J.; Jensen, L. J. J.

10.1101/438192 — bioinformatics — Posted on 2018-10-29

260 Microbial Cells Harboring a Mitochondrial Gene Are Capable of CO2 Capture

Zhou, Y.; Ouyang, L.; Yi, X.; Gan, T.; Qi, J.; Wan, Y.; Wang, Y.; An, S.; Shi, Y.; Yang, W.; Chen, W.; Luo, Z.; Li, J.; Luo, J.; Nuertai, X.; Zhu, X.; Yang, F.; Zhao, B.; Zhang, W.; Ye, Z.-W.; Zhang, X.; Weng, S.; Liu, Q.; Cao, W.; He, J.

10.1101/411090 — bioengineering — Posted on 2018-10-29

261 Sex differences in post-stroke aphasia rates are caused by age. A meta-analysis and database query

Wallentin, M.

10.1101/407296 — neuroscience — Posted on 2018-10-29

262 Gorilla in our Midst: An online behavioral experiment builder

Anwyl-Irvine, A.; Massonnie, J.; Flitton, A.; Kirkham, N.; Evershed, J.

10.1101/438242 — neuroscience — Posted on 2018-10-29

263 In vivo selection for corrected β-globin alleles after CRISPR/Cas9 editing in human sickle hematopoietic stem cells enhances therapeutic potential

Magis, W.; DeWitt, M. A.; Wyman, S. K.; Vu, J. T.; Heo, S.-J.; Shao, S. J.; Hennig, F.; Romero, Z. G.; Campo-Fernandez, B.; McNeill, M.; Rettig, G. R.; Sun, Y.; Lau, P. J.; Wang, Y.; Behlke, M. A.; Kohn, D. B.; Boffelli, D.; Walters, M. C.; Corn, J. E.; Martin, D. I. K.

10.1101/432716 — genetics — Posted on 2018-10-29

264 Development of an environmental DNA method for monitoring fish communities: ground truthing in diverse lakes with characterised fish faunas

Li, J.; Hatton-Ellis, T. W.; Lawson Handley, L.-J.; Kimbell, H. S.; Benucci, M.; Peirson, G.; Haenfling, B.

10.1101/394718 — ecology — Posted on 2018-10-29

265 High resolution discovery of chromatin interactions

Guo, Y.; Krismer, K.; Closser, M.; Wichterle, H.; Gifford, D. K.

10.1101/376194 — bioinformatics — Posted on 2018-10-29

266 Identification of peripheral neural circuits that regulate heart rate using optogenetic and viral vector strategies

Rajendran, P. S.; Challis, R. C.; Fowlkes, C. C.; Hanna, P.; Tompkins, J. D.; Jordan, M. C.; Hiyari, S.; Gabris-Weber, B. A.; Greenbaum, A.; Chan, K. Y.; Deverman, B. E.; Munzberg, H.; Ardell, J. L.; Salama, G.; Gradinaru, V.; Shivkumar, K.

10.1101/456483 — neuroscience — Posted on 2018-10-29

267 One and Two Year Visual Outcomes from the Moorfields AMD Database - an Open Science Resource for the Study of Neovascular Age-related Macular Degeneration

Fasler, K.; Moraes, G.; Wagner, S.; Kortuem, K. U.; Chopra, R.; Faes, L.; Preston, G.; Pontikos, N.; Fu, D. J.; Patel, P.; Tufail, A.; Lee, A.; Balaskas, K.; Keane, P. A.

10.1101/450411 — epidemiology — Posted on 2018-10-29

268 RadiationGeneSigDB: A comprehensive database of oxic and hypoxic radiation response gene expression signatures

Manem, V.; Dhawan, A.

10.1101/455345 — bioinformatics — Posted on 2018-10-29

269 SNAPPY: Single Nucleotide Assignment of Phylogenetic Parameters on the Y chromosome

Severson, A. L.; Shortt, J. A.; Mendez, F. L.; Wojcik, G. L.; Bustamante, C. D.; Gignoux, C. R.

10.1101/454736 — bioinformatics — Posted on 2018-10-29

270 Staufen2 mediated RNA recognition and localization requires combinatorial action of multiple domains

Heber, S.; Gaspar, I.; Tants, J.-N.; Günther, J.; Fernandez Moya, S. M.; Janowski, R.; Ephrussi, A.; Sattler, M.; Niessing, D.

10.1101/396994 — biochemistry — Posted on 2018-10-29

271 Nuclease dead Cas9 is a programmable roadblock for DNA replication

Whinn, K.; Kaur, G.; Lewis, J. S.; Schauer, G.; Müller, S.; Jergic, S.; Maynard, H.; Yan Gan, Z.; Naganbabu, M.; Bruchez, M. P.; O'Donnell, M.; Dixon, N. E.; van Oijen, A. M.; Ghodke, H.

10.1101/455543 — biochemistry — Posted on 2018-10-29

272 Intact mast cell content during mild head injury is required for the development of latent pain sensitization - implications for mechanisms underlying posttraumatic headache

Bree, D.; Levy, D.

10.1101/392928 — neuroscience — Posted on 2018-10-29

273 Overlaps in Brain Dynamical Functional Connectivity between Schizophrenia and Autism Spectrum Disorder

Andriamananjara, A.; Muntari, R.; Crimi, A.

10.1101/385146 — neuroscience — Posted on 2018-10-29

274 The Generalized Data Model for Clinical Research

Danese, M. D.; Halperin, M.; Duryea, J.; Duryea, R.

10.1101/194597 — bioinformatics — Posted on 2018-10-29

275 Parallel Likelihood Calculation for Phylogenetic Comparative Models: the SPLITT C++ Library

Mitov, V.; Stadler, T.

10.1101/235739 — evolutionary biology — Posted on 2018-10-29

276 Kinematic and biomechanical analyses in Drosophila suggests that most legged locomotion in insects can be understood within a single framework.

Chun, C.; Biswas, T.; Bhandawat, V.

10.1101/455246 — neuroscience — Posted on 2018-10-29

277 Retrospective Evaluation of Cyclosporine in the Treatment of Chronic Hepatitis in Dogs: 2010-2017

Ambrosini, Y.; Ullal, T.; Rao, S.; Twedt, D.; Webster, C.

10.1101/453977 — immunology — Posted on 2018-10-29

278 CSTDB: A Crop Stress-tolerance Gene and Protein Database Integrated by Convolutional Neural Networks

Zhang, D.; Yue, Y.; Zhao, Y.; Wang, C.; Cheng, X.; Wu, Y.; Fan, G.; Wu, P.; Gao, Y.; Zhang, Y.; Wu, Y.

10.1101/456343 — bioinformatics — Posted on 2018-10-29

279 Does closing the eyes enhance auditory attention? Eye closure increases attentional alpha-power modulation but not listening performance

Woestmann, M.; Schmitt, L.-M.; Obleser, J.

10.1101/455675 — neuroscience — Posted on 2018-10-29

280 Mouse Genome-Wide Association and Systems Genetics Identifies Lhfp as a Regulator of Bone Mass

Mesner, L. D.; Calabrese, G. M.; Al-Barghouthi, B.; Gatti, D. M.; Sundberg, J. P.; Churchill, G. A.; Godfrey, D.; Ackert-Bicknell, C.; Farber, C. R.

10.1101/454678 — genetics — Posted on 2018-10-29

281 CellTool: an open source software combining bio-image analysis and mathematical modeling

Danovski, G.; Dyankova, T.; Stoynov, S.

10.1101/454256 — bioinformatics — Posted on 2018-10-29

282 Signatures of cell death and proliferation in perturbation transcriptomics data - from confounding factor to effective prediction

Szalai, B.; Subramanian, V.; Saez-Rodriguez, J.

10.1101/454348 — systems biology — Posted on 2018-10-29

283 Preclinical Modeling of Exposure to a Global Marine Bio Contaminant: Effects of In Utero Domoic Acid Exposure on Neonatal Behavior and Infant Memory

Grant, K. S.; Crouthamel, B.; Kenney, C.; McKain, N.; Petroff, R.; Shum, S.; Jing, J.; Isoherranen, N.; Burbacher, T. M.

10.1101/456210 — pharmacology and toxicology — Posted on 2018-10-29

284 A focus on details? Inconsistent results on auditory and visual local-to-global processing in absolute pitch musicians

Wenhart, T.; Altenmueller, E.

10.1101/455907 — neuroscience — Posted on 2018-10-29

285 The Pseudomonas aeruginosa Wsp pathway undergoes positive evolutionary selection during chronic infection

Gloag, E. S.; Marshall, C.; Snyder, D.; Lewin, G. R.; Harris, J. S.; Chaney, S. B.; Whiteley, M.; Cooper, V. S.; Wozniak, D. J.

10.1101/456186 — microbiology — Posted on 2018-10-29

286 Crop residues in wheat-oilseed rape rotation system: a pivotal, shifting platform for microbial meetings

Kerdraon, L.; Balesdent, M.-H.; Barret, M.; Laval, V.; Suffert, F.

10.1101/456178 — microbiology — Posted on 2018-10-29

287 Genetic variation for ontogenetic shifts in metabolism underlies physiological homeostasis in Drosophila

Matoo, O. B.; Julick, C. R.; Montooth, K. L.

10.1101/456269 — genetics — Posted on 2018-10-29

288 Specialized and spatially organized coding of sensory, motor, and cognitive variables in midbrain dopamine neurons

Engelhard, B.; Finkelstein, J.; Cox, J.; Fleming, W.; Jang, H. J.; Ornelas, S.; Koay, S. A.; Thiberge, S.; Daw, N.; Tank, D.; Witten, I.

10.1101/456194 — neuroscience — Posted on 2018-10-29

289 Multipoint and large volume fiber photometry with a single tapered optical fiber implant

Pisano, F.; Pisanello, M.; Maglie, E.; Balena, A.; Sileo, L.; Spagnolo, B.; Hyun, M.; De Vittorio, M.; Sabatini, B. L.; Pisanello, F.

10.1101/455766 — neuroscience — Posted on 2018-10-29

290 Frequency- and area-specific entrainment of intrinsic cortical oscillations by repetitive transcranial magnetic stimulation

Okazaki, Y. O.; Nakagawa, Y.; Mizuno, Y.; Hanakawa, T.; Kitajo, K.

10.1101/455857 — neuroscience — Posted on 2018-10-29

291 Differential Effects of the Menstrual Cycle on Reactive and Proactive Aggression in Borderline Personality Disorder

Peters, J. R.; Owens, S. A.; Schmalenberger, K. M.; Eisenlohr-Moul, T. A.

10.1101/452607 — neuroscience — Posted on 2018-10-29

292 Knock-in rat lines with Cre recombinase at the dopamine D1 and adenosine 2a receptor loci.

Pettibone, J. R.; Yu, J. Y.; Herman, R. C.; Hughes, E. D.; Filipiak, W. E.; Zeidler, M. G.; Saunders, T. L.; Ferrario, C. R.; Berke, J. D.

10.1101/455337 — neuroscience — Posted on 2018-10-29

293 An Efficient Computational Approach for Constructing the Allele Frequency Spectrum of Populations with Arbitrary Complex History

Chen, H.

10.1101/456335 — genetics — Posted on 2018-10-29

294 Discovery and functional annotation of quantitative trait loci affecting resistance to sea lice in Atlantic salmon

Robledo, D.; Gutierrez, A. P.; Barria, A.; Lhorente, J. P.; Houston, R. D.; Yanez, J.

10.1101/455626 — genetics — Posted on 2018-10-29

295 SMUT: multi-SNP Mediation intersection-Union Test

Zhong, W.; Spracklen, C. N.; Mohlke, K. L.; Zheng, X.; Fine, J.; Li, Y.

10.1101/455352 — genetics — Posted on 2018-10-29

296 Diversification of giant and large eukaryotic dsDNA viruses predated the origin of modern eukaryotes

Guglielmini, J.; Woo, A.; Krupovic, M.; Forterre, P.; Gaia, M.

10.1101/455816 — evolutionary biology — Posted on 2018-10-29

297 Addressing multiple sources of uncertainty in the estimation of parrot abundance from roost counts: a case study with the Vinaceous-breasted Parrot (Amazona vinacea)

Zulian, V.; Müller, E. S.; Cockle, K.; Lesterhuis, A.; Tomasi Junior, R.; Prestes, N. P.; Martinez, J.; Ferraz, G.

10.1101/455774 — ecology — Posted on 2018-10-29

298 Drug-target interaction prediction using Doubly Graph Regularized Matrix Completion

Mongia, A.; Majumdar, A.

10.1101/455642 — bioinformatics — Posted on 2018-10-29

299 Engineered developmental niche enables predictive phenotypic screening in human dystrophic cardiomyopathy

Macadangdang, J.; Miklas, J. W.; Smith, A. S. T.; Choi, E.; Leung, W.; Wang, Y.; Guan, X.; Lee, S.; Salick, M. R.; Regnier, M.; Mack, D.; Childers, M. K.; Ruohola-Baker, H.; Kim, D.-H.

10.1101/456301 — bioengineering — Posted on 2018-10-29

300 Pentatricopeptide repeat poly(A) binding protein from mitochondria of trypanosomes

Mesitov, M. V.; Yu, T.; Suematsu, T.; Sement, F.; Zhang, L.; Yu, C.; Huang, L.; Afasizheva, I.

10.1101/456418 — biochemistry — Posted on 2018-10-29

301 One of the gang: social group dynamics in a juvenile passerine bird

Franks, V. R.; Ewen, J. G.; McCready, M.; Rowcliffe, M.; Smith, D.; Thorogood, R.

10.1101/456376 — animal behavior and cognition — Posted on 2018-10-29

302 An Optically Decodable Bead Array for Linking Imaging and Sequencing with Single-Cell Resolution

Yuan, J.; Sheng, J.; Sims, P. A.

10.1101/355677 — systems biology — Posted on 2018-10-29

303 Current and future goals are represented in opposite patterns in object-selective cortex

van Loon, A. M.; Olmos-Solis, K.; Fahrenfort, J. J.; Olivers, C. N. L.

10.1101/337964 — neuroscience — Posted on 2018-10-29

304 Quantifying individual differences in brain morphometry underlying symptom severity in Autism Spectrum Disorders

Pua, E. P.; Ball, G.; Adamson, C.; Bowden, S.; Seal, M.

10.1101/430355 — neuroscience — Posted on 2018-10-29

305 Complex responses of global insect pests to climate change

Lehmann, P.; Ammunet, T.; Barton, M.; Battisti, A.; Eigenbrode, S. D.; Jepsen, J. U.; Kalinkat, G.; Neuvonen, S.; Niemela, P.; Okland, B.; Terblanche, J. S.; Bjorkman, C.

10.1101/425488 — ecology — Posted on 2018-10-29

306 Altered BOLD signal variation in Alzheimer’s disease and frontotemporal dementia

Tuovinen, T.; Kananen, J.; Rytty, R.; Moilanen, V.; Abou Elseoud, A.; Remes, A. M.; Kiviniemi, V.; Alzheimer's Disease Neuroimaging Initiative (ADNI),

10.1101/455683 — neuroscience — Posted on 2018-10-29

307 Retinotopic maps of visual space in the human cerebellum

van Es, D. S.; van der Zwaag, W.; Knapen, T.

10.1101/455170 — neuroscience — Posted on 2018-10-29

308 Bud13 Promotes a Type I Interferon Response By Countering Intron Retention in Irf7

Frankiw, L. S.; Majumdar, D.; Burns, C.; Vlach, L.; Moradian, A.; Sweredoski, M.; Baltimore, D.

10.1101/443820 — molecular biology — Posted on 2018-10-29

309 MicroED data collection with SerialEM

de la Cruz, M. J.; Martynowycz, M. W.; Hattne, J.; Gonen, T.

10.1101/446658 — biophysics — Posted on 2018-10-29

310 Integrated epigenome, exome and transcriptome analyses reveal molecular subtypes and homeotic transformation in uterine fibroids.

George, J. W.; Fan, H.; Johnson, B. K.; Chatterjee, A.; Patterson, A. L.; Koeman, J.; Adams, M.; Madaj, Z. B.; Chesla, D. W.; Marsh, E. E.; Triche, T. J.; Shen, H.; Teixeira, J. M.

10.1101/452342 — physiology — Posted on 2018-10-29

311 An ultra-dense haploid genetic map for evaluating the highly fragmented genome assembly of Norway spruce (Picea abies)

Bernhardsson, C.; Vidalis, A.; Wang, X.; Scofield, D. G.; Schiffthaler, B.; Baison, J.; Street, N. R.; Garcia-Gil, M. R.; Ingvarsson, P. K.

10.1101/292151 — genetics — Posted on 2018-10-29

312 Learning Protein Structural Fingerprints under the Label-Free Supervision of Domain Knowledge

Min, Y.; Liu, S.; Lou, C.; Cui, X.

10.1101/407106 — bioinformatics — Posted on 2018-10-29

313 Ultrafast clustering of single-cell flow cytometry data using FlowGrid

Ye, X.; Ho, J. W. K.

10.1101/394189 — bioinformatics — Posted on 2018-10-29

314 An integrative machine learning approach for prediction of toxicity-related drug safety

Lysenko, A.; Sharma, A.; Boroevich, K.; Tsunoda, T.

10.1101/455667 — systems biology — Posted on 2018-10-29

315 Subcortical theta oscillations alternate with high amplitude neocortical population within synchronized states

Munro Krull, E.; Sakata, S.; Toyoizumi, T.

10.1101/453837 — neuroscience — Posted on 2018-10-29

316 Unraveling intra- and intersegmental neuronal connectivity between central pattern generating networks in a multi-legged locomotor system

Daun, S.; Mantziaris, C.; Toth, T.; Bueschges, A.; Rosjat, N.

10.1101/453423 — neuroscience — Posted on 2018-10-29

317 Identification of RNA-associated peptides, iRAP, defines precise sites of protein-RNA interaction

Peil, L.; Waghmare, S.; Fischer, L.; Spitzer, M.; Tollervey, D.; Rappsilber, J.

10.1101/456111 — molecular biology — Posted on 2018-10-29

318 The CryoEM Structure of the Ribosome Maturation Factor Rea1

Sosnowski, P.; Urnavicius, L.; Boland, A.; Fagiewicz, R.; Busselez, J.; Papai, G.; Schmidt, H.

10.1101/455634 — molecular biology — Posted on 2018-10-29

319 Genomic epidemiology supports multiple introductions and cryptic transmission of Zika virus in Colombia

Black, A.; Moncla, L. H.; Laiton-Donato, K.; Potter, B.; Pardo, L.; Rico, A.; Tovar, C.; Rojas, D. P.; Longini, I. M.; Halloran, M. E.; Pelaez-Carvajal, D.; Ramirez, J. D.; Mercado-Reyes, M.; Bedford, T.

10.1101/454777 — genomics — Posted on 2018-10-29

320 MethCP: Differentially Methylated Region Detection with Change Point Models

Gong, B.; Purdom, E.

10.1101/265116 — genomics — Posted on 2018-10-29

321 Novel insights into the genetic relationship between growth and disease resistance in Pacific salmon

Barria, A.; Doeschl-Wilson, A. B.; Lhorente, J. P.; Houston, R. D.; Yanez, J. M.

10.1101/455196 — genetics — Posted on 2018-10-29

322 Genome-wide association meta-analysis of cocaine dependence: shared genetics with comorbid conditions

Cabana-Dominguez, J.; Shivalikanjli, A.; Fernandez-Castillo, N.; Cormand, B.

10.1101/374553 — genetics — Posted on 2018-10-29

323 A unified haplotype-based method for accurate and comprehensive variant calling

Cooke, D. P.; Wedge, D. C.; Lunter, G.

10.1101/456103 — bioinformatics — Posted on 2018-10-29

324 Functionally Coherent Transcription Factor Target Networks Illuminate Control of Epithelial Remodelling and Oncogenic Notch

Overton, I. M.; Sims, A. H.; Owen, J. A.; Heale, B.; Ford, M. J.; Lubbock, A. L. R.; Pairo-Castineira, E.; Essafi, A.

10.1101/455709 — systems biology — Posted on 2018-10-29

325 Can we study 3D grid codes non-invasively in the human brain? Methodological considerations and fMRI findings

Kim, M.; Maguire, E. A.

10.1101/282327 — neuroscience — Posted on 2018-10-29

326 Glutamate uptake and release at single adult corticostriatal synapses of normal and Huntington mice

Dvorzhak, A.; Helassa, N.; Torok, K.; Schmitz, D.; Grantyn, R.

10.1101/455758 — neuroscience — Posted on 2018-10-29

327 Cell-free soluble expression of the membrane protein PsbS

Krishnan, M.; De Leeuw, F. T.; Pandit, A.

10.1101/456087 — molecular biology — Posted on 2018-10-29

328 In vitro reconstitution of kinetochore-microtubule interface reveals a fundamental error correction mechanism

Doodhi, H.; Kasciukovic, T.; Gierlinski, M.; Li, S.; Clayton, L.; Tanaka, T. U.

10.1101/455873 — cell biology — Posted on 2018-10-29

329 CBFβ-MYH11 interferes with megakaryocyte differentiation via modulating a gene program that includes GATA2 and KLF1

Yi, G.; Mandoli, A.; Jussen, L.; Tijchon, E.; Cordonnier, G.; Hansen, M.; Kim, B.; Nguyen, L. N.; Jansen, P.; Vermeulen, M.; van den Akker, E.; Bond, J.; Martens, J. H. A.

10.1101/453845 — cancer biology — Posted on 2018-10-29

330 Genome editing reveals reproductive and developmental dependencies on specific types of vitellogenin in zebrafish (Danio rerio)

YILMAZ, O.; Patione, A.; Nguyen, T.; Com, E.; Pineau, C.; BOBE, J.

10.1101/456053 — molecular biology — Posted on 2018-10-29

331 Genome-wide mapping identifies beta-1,4-N-acetyl-galactosaminyl-transferase as a novel determinant of sclerostin levels and bone mineral density

Zheng, J.; Maerz, W.; Gergei, I.; Kleber, M.; Drechsler, C.; Wanner, C.; Brandenburg, V.; Reppe, S.; Gautvik, K.; Medina-Gomez, C.; Shevroja, E.; Gilly, A.; Park, Y.-C.; Dedoussis, G.; Zeggini, E.; Lorentzon, M.; Henning, P.; Lerne, U.; Nilsson, K.; Moverare-Skrtic, S.; Baird, D.; Falk, L.; Groom, A.; Capellini, T.; Grundberg, E.; Nethander, M.; Ohlsson, C.; Davey Smith, G.; Tobias, J.

10.1101/455386 — genetics — Posted on 2018-10-29

332 Evolution of the mutational process under relaxed selection in Caenorhabditis elegans

Saxena, A. S.; Salomon, M. P.; Matsuba, C.; Yeh, S.-D.; Baer, C. F.

10.1101/280826 — evolutionary biology — Posted on 2018-10-29

333 Surface tension determines tissue shape and growth kinetics

Ehrig, S.; Bidan, C. M.; West, A.; Jacobi, C.; Lam, K.; Kollmannsberger, P.; Petersen, A.; Tomancak, P.; Kommareddy, K.; Fischer, F. D.; Fratzl, P.; Dunlop, J. W. C.

10.1101/456228 — biophysics — Posted on 2018-10-29

334 Time-resolved fluorescence analysis of LHCII in the presence of PsbS at neutral and low pH

Crisafi, E.; Krishnan, M.; Pandit, A.

10.1101/456046 — biophysics — Posted on 2018-10-29

335 Bioinorganic Angiogenesis

Maillard, S.; Charbonnier, B.; Sayed, O.; Baradaran, A.; Mangat, H.; Dallison, B.; Zhang, Z.; Zhang, Y. L.; Hussain, S. N. A.; Mayaki, D.; Seitz, H.; Harvey, E.; Gilardino, M.; Gbureck, U.; Makhoul, N.; Barralet, J.

10.1101/455212 — bioengineering — Posted on 2018-10-29

336 Proximity proteomics identifies cancer cell membrane cis-molecular complex as a potential cancer target

Kotani, N.; Yamaguchi, A.; Ohnishi, T.; Kuwahara, R.; Nakano, T.; Nakano, Y.; Ida, Y.; Murakoshi, T.; Honke, K.

10.1101/455501 — biochemistry — Posted on 2018-10-29

337 Manifold-tiling Localized Receptive Fields are Optimal in Similarity-preserving Neural Networks

Sengupta, A.; Tepper, M.; Pehlevan, C.; Genkin, A.; Chklovskii, D.

10.1101/338947 — neuroscience — Posted on 2018-10-29

338 Molecular inflection points in the aging human brain

Deng, E.

10.1101/455105 — neuroscience — Posted on 2018-10-29

339 Species limits in butterflies (Lepidoptera: Nymphalidae): Reconciling classical taxonomy with the multispecies coalescent

Matos-Maravi, P.; Wahlberg, N.; Antonelli, A.; Penz, C.

10.1101/451039 — evolutionary biology — Posted on 2018-10-29

340 Live cell bioimaging with carbon dots produced in situ by femtosecond laser from intracellular material

Shakhov, A. M.; Astafiev, A. A.; Osychenko, A. A.; Syrchina, M. S.; Nadtochenko, V. A.

10.1101/455808 — biophysics — Posted on 2018-10-29

341 RadiationGeneSigDB: A comprehensive database of oxic and hypoxic radiation response gene expression signatures

Manem, V.; Dhawan, A.

10.1101/455345 — bioinformatics — Posted on 2018-10-29

342 The Trauma Severity Model: An Ensemble Learning Approach to Risk Prediction

Gorczyca, M. T.; Toscano, N. C.; Cheng, J. D.

10.1101/210575 — bioinformatics — Posted on 2018-10-29

343 Characterising Genetic Diversity in Cassava Brown Streak Virus

Crotty, S. M.; Rohrlach, A. B.; Ndunguru, J.; Boykin, L. M.

10.1101/455303 — bioinformatics — Posted on 2018-10-29

344 Embedding the single-cell sample manifold to reveal insights into cancer pathogenesis and disease heterogeneity

Chen, W. S.; Zivanovic, N.; van Dijk, D.; Wolf, G.; Bodenmiller, B.; Krishnaswamy, S.

10.1101/455436 — bioinformatics — Posted on 2018-10-29

345 Countering Cross-Individual Variance in Event Related Potentials with Functional Profiling

Alsufyani, A.; Zoumpoulaki, A.; Filetti, M.; Janssen, D. P.; Bowman, H.

10.1101/455030 — bioengineering — Posted on 2018-10-29

346 Ultra-sensitive measurement of brain penetration with microscale probes for brain machine interface considerations

Obaid, A. M.; Wu, Y.-W.; Hanna, M.-E.; Nix, W. D.; Ding, J. B.; Melosh, N. A.

10.1101/454520 — neuroscience — Posted on 2018-10-29

347 Reprogramming the antigen specificity of B cells using genome-editing technologies

Voss, J. E.; Gonzalez-Martin, A.; Andrabi, R.; Fuller, R. P.; Murrell, B.; McCoy, L. E.; Porter, K.; Huang, D.; Li, W.; Sok, D.; Le, K.; Briney, B.; Chateau, M.; Rogers, G.; Hangartner, L.; Feeney, A. J.; Nemazee, D.; Cannon, P.; Burton, D.

10.1101/455402 — immunology — Posted on 2018-10-29

348 Rewiring of the cellular and inter-cellular landscape of the human colon during ulcerative colitis

Smillie, C. S.; Biton, M.; Ordovas-Montanes, J.; Sullivan, K. M.; Burgin, G.; Graham, D. B.; Herbst, R. H.; Rogel, N.; Slyper, M.; Waldman, J.; Sud, M.; Andrews, E.; Haber, A. L.; Vickovic, S.; Dionne, D.; Nguyen, L. T.; Villani, A. C.; Hofree, M.; Creasey, E. A.; Huang, H.; Rozenblatt-Rosen, O.; Garber, J. J.; Khalili, H.; Desch, A. N.; Daly, M. J.; Ananthakrishnan, A. N.; Shalek, A. K.; Xavier, R. J.; Regev, A.

10.1101/455451 — genomics — Posted on 2018-10-29

349 TFIIIC dynamically binds Alu elements to control gene expression through chromatin looping

Ferrari, R.; Llobet Cucalon, L. I.; Di Vona, C.; Vidal, E.; Lioutas, A.; Le Dilly, F.; Oliete, J. Q.; Dieci, G.; Teichmann, M.; de la Luna, S.; Beato, M.

10.1101/455733 — genomics — Posted on 2018-10-29

350 Trophic consistency of supraspecific taxa in belowground invertebrate communities

Potapov, A.; Scheu, S.; Tiunov, A.

10.1101/455360 — ecology — Posted on 2018-10-29

351 Piezo1 channel agonist mimics high glucose as a stimulator of insulin release

Deivasikamani, V.; Dhayalan, S.; Mughal, R.; Visnagri, A.; Cuthbertson, K.; Scragg, J. L.; Munsey, T. S.; Viswambharan, H.; Foster, R.; Sivaprasadarao, A.; Kearney, M. T.; Beech, D. J.; Sukumar, P.

10.1101/455832 — cell biology — Posted on 2018-10-29

352 Autoencoder and Optimal Transport to Infer Single-Cell Trajectories of Biological Processes

Yang, K. D.; Damodaran, K.; Venkatchalapathy, S.; Soylemezoglu, A. C.; Shivashankar, G.; Uhler, C.

10.1101/455469 — bioinformatics — Posted on 2018-10-29

353 The development of social interactions in Corydoras aeneus larvae

Riley, R. J.; Roe, T.; Gillie, E. R.; Boogert, N. J.; Manica, A.

10.1101/455188 — animal behavior and cognition — Posted on 2018-10-29

354 Use of a visible reporter marker- myb-related gene in crop plants to minimize herbicide usage against weeds

Aly, R.; Lati, R.; Bari, V. K.; Nassar, J. A.; Eizenberg, H.

10.1101/455162 — plant biology — Posted on 2018-10-29

355 Spreading Depression and Seizure Unification Experimentally Observed in Epilepsy

Bahari, F.; Ssentongo, P.; Liu, J.; Kimbugwe, J.; Schiff, S. J.; Gluckman, B. J.

10.1101/455519 — neuroscience — Posted on 2018-10-29

356 Membrane Lipid-KIR2.x Channel Interactions Enable Hemodynamic Sensing in Cerebral Arteries

Sancho, M.; Fabris, S.; Hald, B. O.; Sandow, S. L.; Poepping, T. L.; Welsh, D. G.

10.1101/455410 — neuroscience — Posted on 2018-10-29

357 Neural Dynamics of Executive Function in Cognitively-able Kindergarteners with Autism Spectrum Disorders (ASD) as Predictors of Concurrent Academic Achievement: Preliminary Study

Kim, S. H.; Buzzell, G.; Faja, S.; Choi, Y. B.; Brito, N.; Shuffrey, L.; Fifer, W.; Morrison, F.; Lord, C.; Fox, N.

10.1101/455485 — neuroscience — Posted on 2018-10-29

358 Discovery of perturbation gene targets via free text metadata mining in Gene Expression Omnibus

Djordjevic, D.; Tang, J. Y. S.; Chen, Y. X.; Kwan, S. L. S.; Ling, R. W. K.; Qian, G.; Woo, C. Y. Y.; Ellis, S. J.; Ho, J. W. K.

10.1101/150896 — bioinformatics — Posted on 2018-10-29

359 Lewy pathology in Parkinson’s disease consists of a crowded organellar, membranous medley

10.1101/137976 — neuroscience — Posted on 2018-10-29

360 Phylodynamics of rapidly adapting pathogens: extinction and speciation of a Red Queen

Yan, L.; Neher, R.; Shraiman, B. I.

10.1101/455444 — evolutionary biology — Posted on 2018-10-29

361 Simultaneous isotope dilution quantification and metabolic tracing of deoxyribonucleotides by liquid chromatography high resolution mass spectrometry

Kuskovsky, R.; Buj, R.; Xu, P.; Hofbauer, S.; Doan, M. T.; Jiang, H.; Bostwick, A.; Mesaros, C.; Aird, K. M.; Snyder, N. W.

10.1101/454322 — biochemistry — Posted on 2018-10-29

362 A multi-modal proteomics strategy for characterizing posttranslational modifications of tumor suppressor p53 reveals many sites but few modified forms

DeHart, C. J.; Fornelli, L.; Anderson, L. C.; Fellers, R. T.; Lu, D.; Hendrickson, C. L.; Lahav, G.; Gunawardena, J.; Kelleher, N. L.

10.1101/455527 — systems biology — Posted on 2018-10-29

363 The Nucleus Mediates Mechanosensitive Reorganization of Epigenetically Marked Chromatin During Cardiac Maturation and Pathology

Seelbinder, B.; Ghosh, S.; Berman, A. G.; Schneider, S. E.; Goergen, C. J.; Calve, S.; Neu, C. P.

10.1101/455600 — cell biology — Posted on 2018-10-29

364 A novel real-time PCR assay panel for detection of common respiratory pathogens in a convenient, strip-tube array format

Hasan, M. R.; Al Mana, H.; Young, V.; Tang, P.; Thomas, E.; Tan, R.; Tilley, P.

10.1101/455568 — pathology — Posted on 2018-10-29

365 Patterns of fish utilisation in a tropical Indo-Pacific mangrove-coral seascape, New Caledonia

Dubuc, A.; Waltham, N.; Baker, R.; Marchand, C.; Sheaves, M.

10.1101/455931 — ecology — Posted on 2018-10-29

366 Stepwise activation mechanism of the scramblase nhTMEM16 revealed by cryo-EM

Kalienkova, V.; Clerico Mosina, V.; Bryner, L.; Oostergetel, G. T.; Dutzler, R.; Paulino, C.

10.1101/455287 — biochemistry — Posted on 2018-10-29

367 Salicylate increases fitness cost associated with MarA-mediated antibiotic resistance

Wang, T.; Kunze, C.; Dunlop, M. J.

10.1101/454983 — systems biology — Posted on 2018-10-29

368 Wood modification by furfuryl alcohol caused delayed decomposition response in Rhodonia (Postia) placenta

Skrede, I.; Solbakken, M. H.; Hess, J.; Fossdal, C. G.; Hegnar, O.; Alfredsen, G.

10.1101/454868 — genomics — Posted on 2018-10-29

369 Criticality between cortical states

Fontenele, A.; de Vasconcelos, N. A. P.; Feliciano, T.; Aguiar, L.; Soares-Cunha, C.; Coimbra, B.; Dalla Porta, L.; Ribeiro, S.; Rodrigues, A. J.; Sousa, N.; Carelli, P. V.; Copelli, M.

10.1101/454934 — neuroscience — Posted on 2018-10-29

370 An emergent Ebola virus nucleoprotein variant influences virion budding, oligomerization, transcription and replication

Lin, A. E.; Diehl, W. E.; Cai, Y.; Finch, C.; Akusobi, C.; Kirchdoerfer, R. N.; Bollinger, L.; Schaffner, S. F.; Brown, E. A.; Saphire, E. O.; Andersen, K. G.; Kuhn, J. H.; Luban, J.; Sabeti, P. C.

10.1101/454314 — microbiology — Posted on 2018-10-29

371 Therapeutic blockade of Activin-A improves NK cell function and anti-tumor immunity

Rautela, J.; Dagley, L. F.; Schuster, I. S.; Hediyeh-Zadeh, S.; Delconte, R.; Cursons, J.; Hennessy, R.; Hutchinson, D. S.; Harrison, C.; Oliveira, C. C.; Vivier, E.; Webb, A. I.; Degli-Esposti, M.; Davis, M.; Huntington, N. D.; Souza-Fonseca-Guimaraes, F.

10.1101/454801 — immunology — Posted on 2018-10-29

372 The architecture of cell differentiation in choanoflagellates and sponge choanocytes

Laundon, D.; Larson, B.; McDonald, K.; King, N.; Burkhardt, P.

10.1101/452185 — evolutionary biology — Posted on 2018-10-29

373 Wolbachia pipientis occurs in Aedes aegypti populations in New Mexico and Florida, USA

Kulkarni, A.; Yu, W.; Jiang, J.; Sanchez, C.; Karna, A. K.; Martinez, K. J. L.; Hanley, K. A.; Buenemann, M.; Hansen, I. A.; Xue, R.-d.; Ettestad, P.; Melman, S.; Duguma, D.; Debboun, M.; Xu, J.

10.1101/455014 — ecology — Posted on 2018-10-29

374 Comparative analysis of cellular immune responses in conventional and SPF Baboons (Papio spp.)

Magden, E. R.; Nehete, B. P.; Chitta, S.; Williams, L. E.; Simmons, J. H.; Abee, C. R.; Nehete, P. N.

10.1101/455881 — immunology — Posted on 2018-10-29

375 Vaccine-induced protection from homologous Tier 2 simian-human immunodeficiency virus challenge in nonhuman primates

Pauthner, M. G.; Nkolola, J. P.; Havenar-Daughton, C.; Murrell, B.; Reiss, S. M.; Bastidas, R.; Prevost, J.; Nedellec, R.; von Bredow, B.; Abbink, P.; Cottrell, C. A.; Kulp, D. W.; Tokatlian, T.; Nogal, B.; Bianchi, M.; Li, H.; Lee, J. H.; Butera, S. T.; Evans, D. T.; Hangartner, L.; Finzi, A.; Wilson, I. A.; Wyatt, R. T.; Irvine, D. J.; Schief, W. R.; Ward, A. B.; Sanders, R. W.; Crotty, S.; Shaw, G. M.; Barouch, D. H.; Burton, D. R.

10.1101/454769 — immunology — Posted on 2018-10-29

376 Soil microbial communities with greater investment in resource acquisition have lower growth yield

Malik, A. A.; Puissant, J.; Goodall, T.; Allison, S. D.; Griffiths, R. I.

10.1101/455071 — ecology — Posted on 2018-10-29

377 Bayesian inference of ecological models with historical contingency

Dupas, S.

10.1101/453027 — ecology — Posted on 2018-10-29

378 Use of a corneal impression membrane for the detection of Herpes Simplex Virus type-1

Brunner, M.; Somerville, T.; Corless, C. E.; Myneni, J.; Rajhbeharrysingh, T.; Tiew, S.; Neal, T.; Kaye, S. B.

10.1101/455550 — microbiology — Posted on 2018-10-29

379 Sexual antagonism drives the displacement of polymorphism across gene regulatory cascades

Hill, M.; Reuter, M.; Stewart, A.

10.1101/454959 — evolutionary biology — Posted on 2018-10-29

380 SNAPPY: Single Nucleotide Assignment of Phylogenetic Parameters on the Y chromosome

Severson, A. L.; Shortt, J. A.; Mendez, F. L.; Wojcik, G. L.; Bustamante, C. D.; Gignoux, C. R.

10.1101/454736 — bioinformatics — Posted on 2018-10-29

381 Photoacoustic pigment relocalization sensor

Lauri, A.; Soliman, D.; Omar, M.; Stelzl, A.; Ntziachristos, V.; Westmeyer, G. G.

10.1101/455022 — bioengineering — Posted on 2018-10-29

382 Nuclease dead Cas9 is a programmable roadblock for DNA replication

Whinn, K.; Kaur, G.; Lewis, J. S.; Schauer, G.; Müller, S.; Jergic, S.; Naganbabu, M.; Bruchez, M. P.; O'Donnell, M.; Dixon, N. E.; van Oijen, A. M.; Ghodke, H.

10.1101/455543 — biochemistry — Posted on 2018-10-29

383 Cryo-EM structures and functional characterization of the lipid scramblase TMEM16F

Alvadia, C.; Lim, N. K.; Clerico Mosina, V.; Oostergetel, G. T.; Dutzler, R.; Paulino, C.

10.1101/455261 — biochemistry — Posted on 2018-10-29

384 Experience-dependent effects of muscimol-induced hippocampal excitation on mnemonic discrimination

Johnson, S. A.; Turner, S. M.; Lubke, K. N.; Cooper, T. L.; Fertal, K. E.; Bizon, J. L.; Maurer, A. P.; Burke, S. N.

10.1101/454744 — neuroscience — Posted on 2018-10-29

385 Physiological Synchrony Predicts Observational Threat Learning in Humans

Parnamets, P.; Espinosa, L.; Olsson, A.

10.1101/454819 — neuroscience — Posted on 2018-10-29

386 Tuning of ventral tenia tecta neurons of the olfactory cortex to distinct scenes of feeding behavior

Shiotani, K.; Manabe, H.; Tanisumi, Y.; Murata, K.; Hirokawa, J.; Sakurai, Y.; Mori, K.

10.1101/455089 — neuroscience — Posted on 2018-10-29

387 Improving the interpretability of species distribution models by using local approximations

Angelov, B.

10.1101/454991 — ecology — Posted on 2018-10-29

388 Influence of mutagenic versus non-mutagenic pre-operative chemotherapy on the immune infiltration of breast cancer

Tokes, A.-M.; Rusz, O.; Cserni, G.; Toth, E.; Rubovszky, G.; Tokes, T.; Vizkeleti, L.; Reiniger, L.; Koszo, R.; Kahan, Z.; Kulka, J.; Donia, M.; Voros, A.; Szallasi, Z.

10.1101/455055 — cancer biology — Posted on 2018-10-29

389 Interpretable classification of Alzheimer’s disease pathologies with a convolutional neural network pipeline

Tang, Z.; Chuang, K. V.; DeCarli, C.; Jin, L.-W.; Beckett, L.; Keiser, M. J.; Dugger, B. N.

10.1101/454793 — pathology — Posted on 2018-10-29

390 Molecular inflection points in the aging human brain

Deng, E.

10.1101/455105 — neuroscience — Posted on 2018-10-29

391 Impact of mothers’ past experience and early-life stress on aggression and cognition in adult male mice

Reshetnikov, V.; Bondar, N.; Ryabushkina, Y.

10.1101/453084 — neuroscience — Posted on 2018-10-29

392 GRIPT: A novel case-control analysis method for Mendelian disease gene discovery

Wang, J.; Zhao, L.; Wang, X.; Chen, Y.; Xu, M.; Soens, Z. T.; Ge, Z.; Wang, P. R.; Wang, F.; Chen, R.

10.1101/454975 — genomics — Posted on 2018-10-29

393 Genomic epidemiology supports multiple introductions and cryptic transmission of Zika virus in Colombia

Black, A.; Moncla, L. H.; Laiton-Donato, K.; Pardo, L.; Rico, A.; Tovar, C.; Rojas, D. P.; Longini, I. M.; Halloran, M. E.; Pelaez-Carvajal, D.; Ramirez, J. D.; Mercado-Reyes, M.; Bedford, T.

10.1101/454777 — genomics — Posted on 2018-10-29

394 Identifying priority conservation areas for recovering large carnivores using citizen science data

Bonnet-Lebrun, A.-S.; Karamanlidis, A.; de Gabriel Hernando, M.; Renner, I.; Gimenez, O.

10.1101/454603 — ecology — Posted on 2018-10-29

395 A new highly sensitive real-time quantitative-PCR method for detection of BCR-ABL1 to monitor minimal residual disease in chronic myeloid leukemia after discontinuation of imatinib

Tabe, Y.; Kitamura, H.; Tsuchiya, K.; Yuri, M.; Ai, T.; Misawa, S.; Horii, T.; Ohsaka, A.; Kimura, S.

10.1101/455956 — cancer biology — Posted on 2018-10-29

396 Development of a microfluidic cell culture and monitoring system for intracellular signaling studies

Ohkubo, T.; Kinoshita, H.; Maekawa, T.; Kunida, K.; Kimura, H.; Kuroda, S.; Fujii, T.

10.1101/453100 — bioengineering — Posted on 2018-10-29

397 Salivary and plasma levels of matrix metalloproteinase-9 and myeloperoxidase at rest and after acute physical exercise in patients with coronary artery disease

Mahmood, Z.; Enocsson, H.; Bäck, M.; Lundberg, A. K.; Jonasson, L.

10.1101/455915 — biochemistry — Posted on 2018-10-29

398 Self-organization of conducting pathways explains electrical wave propagation in cardiac tissues with high fibrosis

Kudryashova, N.; Nizamieva, A.; Tsvelaya, V.; Panfilov, A. V.; Agladze, K. I.

10.1101/455964 — systems biology — Posted on 2018-10-29

399 Lineage-dependent differences and the role of IFITM3 in the type-I interferon-induced restriction of Zika virus

Gobillot, T.; Humes, D.; Sharma, A.; Overbaugh, J.

10.1101/455972 — microbiology — Posted on 2018-10-29

400 Reticulate evolution in eukaryotes: origin and evolution of the nitrate assimilation pathway

Ocana-Pallares, E.; Najle, S. R.; Scazzocchio, C.; Ruiz-Trillo, I.

10.1101/454272 — evolutionary biology — Posted on 2018-10-29

401 Dynamic evolutionary history and gene content of sex chromosomes across diverse songbirds

Xu, L.-h.; Auer, G.; Peona, V.; Suh, A.; Deng, Y.; Feng, S.-h.; Zhang, G.-j.; Blom, M.; Christidis, L.; Prost, S.; Irestedt, M.; Zhou, Q.

10.1101/454843 — evolutionary biology — Posted on 2018-10-29

402 Definitive demonstration by synthesis of genome annotation completeness

Jaschke, P. R.; Dotson, G. A.; Hung, K.; Liu, D.; Endy, D.

10.1101/455428 — synthetic biology — Posted on 2018-10-28

403 Comparative transcriptome analysis reveals higher expression of stress and defense responsive genes in dwarf soybeans obtained from the crossing of G. max and G. soja

Ban, Y.-W.; Roy, N. S.; Yang, H.; Choi, H.-K.; Kim, J.-H.; Basnet, P.; Ha, K.-S.; Ham, J.-K.; Park, K.-C.; Choi, I.-Y.

10.1101/455923 — plant biology — Posted on 2018-10-29

404 Umbelliprenin isolated from Ferula sinkiangensis inhibits tumor growth and migration through the disturbance of Wnt signaling pathway in gastric cancer

Zhang, L.; Sun, X.; Si, J.; Li, G.; Cao, L.

10.1101/455949 — molecular biology — Posted on 2018-10-29

405 How cancer patients perceive clinical trials (CTs) in the era of CTs: Current perceptional status and differences between common and rare cancers

Park, J. H.; Lee, J. S.; Koo, H.; Kim, T. W.

10.1101/455899 — epidemiology — Posted on 2018-10-29

406 Quantifying individual differences in brain morphometry underlying symptom severity in Autism Spectrum Disorders

Pua, E. P.; Ball, G.; Adamson, C.; Bowden, S.; Seal, M.

10.1101/430355 — neuroscience — Posted on 2018-10-28

407 High resolution AKT signaling in individual cells

Gross, S. M.; Dane, M. A.; Bucher, E.; Heiser, L. M.

10.1101/373993 — cell biology — Posted on 2018-10-28

408 doublesex regulates sexually dimorphic beetle horn formation by integrating spatial and temporal developmental contexts in the Japanese rhinoceros beetle Trypoxylus dichotomus

Morita, S.; Ando, T.; Maeno, A.; Mizutani, T.; Mase, M.; Shigenobu, S.; Niimi, T.

10.1101/328120 — developmental biology — Posted on 2018-10-28

409 Improved prediction of chronological age from DNA methylation limits it as a biomarker of ageing

Zhang, Q.; Vallerga, C.; Walker, R.; Lin, T.; Henders, A.; Montgomery, G.; He, J.; Fan, D.; Fowdar, J.; Kennedy, M.; Pitcher, T.; Pearson, J.; Halliday, G.; Kwok, J.; Hickie, I.; Lewis, S.; Anderson, T.; Silburn, P.; Mellick, G.; Harris, S. E.; Redmond, P.; Murray, A.; Porteous, D.; Haley, C.; Evans, K.; McIntosh, A.; Yang, J.; Gratten, J.; Marioni, R.; Wray, N.; Deary, I.; Mcrae, A.; Visscher, P.

10.1101/327890 — bioinformatics — Posted on 2018-10-28

410 AMPK regulates germline stem cell quiescence and integrity through an endogenous small RNA pathway.

Kadekar, P.; Roy, R.

10.1101/455253 — developmental biology — Posted on 2018-10-28

411 Estradiol reverses excitatory synapse loss in a cellular model of neuropsychiatric disorders

Erli, F.; Palmos, A. B.; Raval, P.; Mukherjee, J.; Brandon, N. J.; Penzes, P.; Sellers, K. J.; Srivastava, D. P.

10.1101/455113 — neuroscience — Posted on 2018-10-28

412 SV40 polyomavirus activates the Ras-MAPK signaling pathway for vacuolization, cell death, and virus release

Motamedi, N.; Sewald, X.; Luo, Y.; Mothes, W.; DiMaio, D.

10.1101/454850 — microbiology — Posted on 2018-10-28

413 The multi PAM2 protein Upa2 functions as novel core component of endosomal mRNA transport

Jankowski, S.; Pohlmann, T.; Baumann, S.; Zander, S.; Kumar Devan, S.; Feldbruegge, M.

10.1101/455378 — cell biology — Posted on 2018-10-28

414 Heteromerization of endogenous mu and delta opioid receptors tunes mu opioid receptor signaling and trafficking

Derouiche, L.; Ugur, M.; Pierre, F.; Mann, A.; Doridot, S.; Ory, S.; Schulz, S.; Massotte, D.

10.1101/455147 — neuroscience — Posted on 2018-10-28

415 Targeting endogenous retrovirus gene transcription in human cancers

Lin, A. T.; Santander, C. G.; Marchi, E.; Karamitros, T.; Katzourakis, A.; Magiorkinis, G.

10.1101/449686 — bioinformatics — Posted on 2018-10-28

416 Adaptive disinhibitory gating by VIP interneurons permits associative learning

Krabbe, S.; Paradiso, E.; d'Aquin, S.; Bitterman, Y.; Xu, C.; Yonehara, K.; Markovic, M.; Gründemann, J.; Ferraguti, F.; Lüthi, A.

10.1101/443614 — neuroscience — Posted on 2018-10-28

417 Linear-double-stranded DNA (ldsDNA) based AND logic computation in mammalian cells

Li, S.; Su, W.; Zhang, C.

10.1101/266056 — synthetic biology — Posted on 2018-10-28

418 The Rhizoctonia solani RsLysM and RsRlpA effector proteins contribute to virulence suppressing chitin-triggered immunity and hypersensitive response

Dolfors, F.; Holmquist, L.; Moschou, P.; Dixelius, C.; Tzelepis, G.

10.1101/395582 — plant biology — Posted on 2018-10-28

419 Drug Repurposing: The Anthelmintics Niclosamide and Nitazoxanide are Potent TMEM16A Antagonists that Fully Bronchodilate Airways

Miner, K.; Labitzke, K.; Liu, B.; Wang, P.; Henckels, K.; Gaida, K.; Elliott, R.; Chen, J. J.; Liu, L.; Leith, A.; Trueblood, E.; Hensley, K.; Xia, X.-Z.; Homann, O.; Bennett, B.; Fiorino, M.; Whoriskey, J.; Yu, G.; Escobar, S.; Wong, M.; Born, T. L.; Budelsky, A.; Comeau, M.; Smith, D.; Phillips, J.; Johnston, J. A.; McGivern, J.; Weikl, K.; Powers, D.; Kunzelmann, K.; Mohn, D.; Hochheimer, A.; Sullivan, J. K.

10.1101/254888 — physiology — Posted on 2018-10-28

420 BspA and Pmp proteins of Trichomonas vaginalis mediate adherence to host cells

Handrich, M. R.; Garg, S. G.; Sommerville, E. W.; Hirt, R. P.; Gould, S. B.

10.1101/454884 — cell biology — Posted on 2018-10-27

421 Quantifying motor protein copy number in super-resolution using an imaging invariant calibration

Cella Zanacchi, F.; Manzo, C.; Magrassi, R.; Derr, N. D.; Lakadamyali, M.

10.1101/454900 — biophysics — Posted on 2018-10-27

422 Visualization of axonal protein allocation in Drosophila with whole brain localization microscopy

Chu, L.-A.; Lu, C.-H.; Yang, S.-M.; Feng, K.-L.; Liu, Y.-T.; Chen, C.-C.; Tsai, Y.-C.; Chen, P.; Lee, T.-K.; Hwu, Y.-K.; Chen, B.-C.; Chiang, A.-S.

10.1101/454942 — neuroscience — Posted on 2018-10-27

423 Suppressor of Fused controls perinatal expansion and quiescence of future dentate adult neural stem cells

Pleasure, S. J.; Noguchi, H.; Castillo, J. G.; Nakashima, K.

10.1101/454751 — developmental biology — Posted on 2018-10-27

424 A homeobox gene, BarH-1, underlies a female alternative life-history strategy

Woronik, A.; Tunstrom, K.; Perry, M. W.; Neethiraj, R.; Stefanescu, C.; de la Paz Celorio-Mancera, M.; Brattstrom, O.; Hill, J.; Lehmann, P.; Kakela, R.; Wheat, C. W.

10.1101/424879 — genomics — Posted on 2018-10-27

425 Vocal motor experiences consolidate the vocal motor circuitry and accelerate future vocal skill development

Vellema, M.; Diales Rocha, M.; Bascones, S.; Zsebok, S.; Dreier, J.; Leitner, S.; Van der Linden, A.; Brewer, J.; Gahr, M.

10.1101/440388 — animal behavior and cognition — Posted on 2018-10-27

426 Engrafted parenchymal brain macrophages differ from host microglia in transcriptome, epigenome and response to challenge

Shemer, A.; Grozovski, J.; Leng Tay, T.; Tao, J.; Volaski, A.; Suess, P.; Ardura-Fabregat, A.; Gross, M.; Kim, J.-S.; David, E.; Chappell-Maor, L.; Thielecke, L.; Glass, C. K.; Cornils, K.; Prinz, M.; Jung, S.

10.1101/369942 — immunology — Posted on 2018-10-27

427 A robust phylogenomic timetree for biotechnologically and medically important fungi in the genera Aspergillus and Penicillium

Steenwyk, J. L.; Shen, X.-X.; Lind, A. L.; Goldman, G. G.; Rokas, A.

10.1101/370429 — evolutionary biology — Posted on 2018-10-27

428 GREIN: An interactive web platform for re-analyzing GEO RNA-seq data

Al Mahi, N.; Najafabadi, M. F.; Pilarczyk, M.; Kouril, M.; Medvedovic, M.

10.1101/326223 — bioinformatics — Posted on 2018-10-27

429 Hippocampal atrophy and intrinsic brain network dysfunction relate to alterations in mind wandering in neurodegeneration

O'Callaghan, C.; Shine, J.; Hodges, J.; Andrews-Hanna, J.; Irish, M.

10.1101/194092 — neuroscience — Posted on 2018-10-27

430 Affiliative social relationships but not dominance rank affects endo-parasite product excretion in a cooperatively breeding bird species

Wascher, C. A. F.; Canestrari, D.; Baglione, V.

10.1101/159129 — animal behavior and cognition — Posted on 2018-10-27

431 Maximum entropy framework for inference of cell population heterogeneity in signaling network dynamics

Dixit, P.; Lyashenko, E.; Niepel, M.; Vitkup, D.

10.1101/137513 — systems biology — Posted on 2018-10-27

432 An ancient role for Collier/Olf/Ebf (COE)-type transcription factors in axial motor neuron development

Catela, C.; Correa, E.; Aburas, J.; Croci, L.; Consalez, G.; Kratsios, P.

10.1101/454926 — developmental biology — Posted on 2018-10-27

433 Connect-seq to superimpose molecular on anatomical neural circuit maps

Hanchate, N. K.; Lee, E. J.; Ellis, A.; Kondoh, K.; Kuang, D.; Basom, R.; Trapnell, C.; Buck, L. B.

10.1101/454835 — neuroscience — Posted on 2018-10-27

434 Competition for space induces cell elimination through compaction-driven ERK downregulation

Moreno, E.; Valon, L.; Levillayer, F.; Levayer, R.

10.1101/447888 — developmental biology — Posted on 2018-10-27

435 Preliminary prediction of the potential distribution and consequences of Haemaphysalis longicornis (Ixodida: Ixodidae) in the United States and North America, using a simple rule-based climate envelope model

Magori, K.

10.1101/389940 — ecology — Posted on 2018-10-27

436 The Heterotaxy Gene, CCDC11, is Essential for Cytokinesis and Cell-Cell Adhesion Via RhoA Regulation

Kulkarni, S. S.; Stephenson, R.; Amalraj, S.; Betleja, E.; Moresco, J. J.; Yates, J. R.; Mahjoub, M. R.; Miller, A.; Khokha, M.

10.1101/452631 — cell biology — Posted on 2018-10-26

437 Differential Sustained and Transient Temporal Processing Across Visual Streams

Stigliani, A.; Jeska, B.; Grill-Spector, K.

10.1101/358473 — neuroscience — Posted on 2018-10-26

438 Effective Degrees of Freedom of the Pearson’s Correlation Coefficient under Serial Correlation

Afyouni, S.; Smith, S. M.; Nichols, T. E.

10.1101/453795 — neuroscience — Posted on 2018-10-26

439 Epigenome-wide Analysis Identifies Genes and Pathways Linked to Neurobehavioral Variation in Preterm Infants

Everson, T. M.; Marsit, C. J.; O'Shea, T. M.; Burt, A.; Hermetz, K.; Pastyrnak, S. L.; Neal, C. R.; Carter, B. S.; Helderman, J.; McGowan, E. C.; Smith, L. M.; Coliman, A.; Hofheimer, J. A.; DellaGrotta, S. A.; Dansereau, L. M.; Padbury, J. F.; Lester, B. M.

10.1101/445130 — epidemiology — Posted on 2018-10-26

440 High residual prevalence of vaccine serotype Streptococcus pneumoniae carriage 4 to 6 years after introduction of 13-valent pneumococcal conjugate vaccine in Malawi: a prospective serial cross-sectional study

Swarthout, T. D.; Fronterre, C.; Lourenco, J.; Obolski, U.; Gori, A.; Bar-Zeev, N.; Everett, D.; Kamngona, A. W.; Mwalukomo, T. S.; Mataya, A. A.; Mwansambo, C.; Banda, M.; Gupta, S.; Diggle, P.; French, N.; Heyderman, R. S.

10.1101/445999 — epidemiology — Posted on 2018-10-26

441 One and Two Year Visual Outcomes from the Moorfields AMD Database - an Open Science Resource for the Study of Neovascular Age-related Macular Degeneration

Fasler, K.; Moraes, G.; Wagner, S.; Kortuem, K. U.; Chopra, R.; Faes, L.; Preston, G.; Pontikos, N.; Fu, D. J.; Patel, P.; Tufail, A.; Lee, A.; Balaskas, K.; Keane, P. A.

10.1101/450411 — epidemiology — Posted on 2018-10-26

442 Bidirectional effects of anxiety and anorexia nervosa: A Mendelian randomization study

Lloyd, E. C.;Sallis, H. M.;Verplanken, B.;Haase, A. M.;Munafo, M. R.

10.1101/451500 — epidemiology — Posted on 2018-10-26

443 Insomnia and problematic gaming: a study in 9 low- and middle- incomes countries

Etindele Sosso, F. A.;Kuss, D. J.

10.1101/451724 — epidemiology — Posted on 2018-10-26

444 Protein-protein binding pathways and calculations of rate constants using fully continuous explicit solvent simulations

Saglam, A.;Chong, L.

10.1101/453985 — biophysics — Posted on 2018-10-26

445 Venom Isosolenopsin A Delivers Rapid Knockdown of Fire Ant Competitors

Fox, E. G. P.; XiaoQing, W.; Wang, L.; Chen, L.; Xu, Y.; Lu, Y.

10.1101/454637 — zoology — Posted on 2018-10-26

446 GNE: A deep learning framework for gene network inference by aggregating biological information

KC, K.; Li, R.; Cui, F.; Yu, Q.; Haake, A.

10.1101/300996 — systems biology — Posted on 2018-10-26

447 An Accessible Continuous-Culture Turbidostat for Pooled Analysis of Complex Libraries

McGeachy, A. M.; Meacham, Z. A.; Ingolia, N.

10.1101/450536 — systems biology — Posted on 2018-10-26

448 Pinnularia baetica sp. nov. (Bacillarophyceae): a new diatom species found in an alkaline mountain lagoon in the south of Europe (Granada, Spain)

Fernandez Moreno, D.; Luis, A.; Sanchez Castillo, P. M.

10.1101/452110 — plant biology — Posted on 2018-10-26

449 Integrated epigenome, exome and transcriptome analyses reveal molecular subtypes and homeotic transformation in uterine fibroids.

George, J. W.; Fan, H.; Chatterjee, A.; Patterson, A. L.; Koeman, J.; Adams, M.; Madaj, Z. B.; Chesla, D. W.; Marsh, E. E.; Shen, H.; Teixeira, J. M.

10.1101/452342 — physiology — Posted on 2018-10-26

450 Highly Predictive Transdiagnostic Features Shared across Schizophrenia, Bipolar Disorder, and ADHD Identified Using a Machine Learning Based Approach

Liu, Y.; Mellem, M. S.; Gonzalez, H.; Kollada, M.; Mahableshwarkar, A. R.; Madrid, A.; Martin, W. J.; Ahammad, P.

10.1101/453951 — pathology — Posted on 2018-10-26

451 Human Handedness: Genetics, Microtubules, Neuropsychiatric Diseases and Brain Language Areas

Wiberg, A.; Douaud, G.; Ng, M.; Al Omran, Y.; Alfaro-Almagro, F.; Marchini, J.; Bennett, D. L.; Smith, S.; Furniss, D.

10.1101/454660 — neuroscience — Posted on 2018-10-26

452 Homeostatic plasticity rules control the wiring of axo-axonic synapses at the axon initial segment

Pan-Vazquez, A.; Wefelmeyer, W.; Gonzalez Sabater, V.; Burrone, J.

10.1101/453753 — neuroscience — Posted on 2018-10-26

453 The rat medial prefrontal cortex exhibits flexible neural activity states during the performance of an odor span task

De Falco, E.; An, L.; Sun, N.; Roebuck, A. J.; Greba, Q.; Lapish, C. C.; Howland, J. G.

10.1101/454611 — neuroscience — Posted on 2018-10-26

454 Disrupted reinforcement learning during post-error slowing in ADHD

Chevrier, A.; Bhaijiwala, M.; Lipszyc, J.; Cheyne, D.; Graham, S.; Schachar, R.

10.1101/449975 — neuroscience — Posted on 2018-10-26

455 Subcortical theta oscillations alternate with high amplitude neocortical population within synchronized states

Munro Krull, E.; Toyoizumi, T.; Sakata, S.

10.1101/453837 — neuroscience — Posted on 2018-10-26

456 TURBULENCE IN THE HIPPOCAMPUS: AN ANSATZ FOR THE ENERGY CASCADEHYPOTHESIS

Sheremet, A.; Qin, Y.; Kennedy, J. P.; Zhou, Y.; Maurer, A. P.

10.1101/453506 — neuroscience — Posted on 2018-10-26

457 Probability cueing of singleton-distractor locations in visual search: priority-map- or dimension-based inhibition?

Zhang, B.; Allenmark, F.; Liesefeld, H. R.; Shi, Z.; Müller, H. J.

10.1101/454140 — neuroscience — Posted on 2018-10-26

458 The BRadykinesia Akinesia INcoordination (BRAIN) tap test: capturing the sequence effect

Hasan, H.; Burrows, M.; Athauda, D.; Hellman, B.; James, B.; Warner, T.; Foltynie, T.; Giovannoni, G.; Lees, A.; Noyce, A.

10.1101/453852 — neuroscience — Posted on 2018-10-26

459 Active membrane conductances and morphology of a collision detection neuron broaden its impedance profile and improve membrane synchrony

Dewell, R.; Gabbiani, F.

10.1101/454702 — neuroscience — Posted on 2018-10-26

460 Characterization of α 3 Glycine Receptors with Ginkgolide B and Picrotoxin

Chakrabarti, S.; Neelakantan, A.; Slaughter, M. M.

10.1101/454710 — neuroscience — Posted on 2018-10-26

461 The beta propellers of eIF3b and eIF3i relocate together to the ribosomal intersubunit interface during translation initiation

Llacer, J. L.; Hussain, T.; Gordiyenko, Y.; Lorsch, J.; Hinnebusch, A.; Ramakrishnan, V.

10.1101/453688 — molecular biology — Posted on 2018-10-26

462 RNA polymerase clamp movement aids dissociation from DNA but is not required for RNA release at intrinsic terminators

Bellecourt, M. J.; Ray-Soni, A.; Harwig, A.; Mooney, R. A.; Landick, R.

10.1101/453969 — molecular biology — Posted on 2018-10-26

463 Crosstalk between RNA Pol II C-Terminal Domain Acetylation and Phosphorylation via RPRD Proteins

Ali, I.; Garrido-Ruiz, D.; Ni, Z.; Johnson, J. R.; Zhang, H.; Li, P.-C.; Conrad, R. J.; Guo, X.; Min, J.; Greenblatt, J.; Jacobson, M.; Krogan, N. J.; Ott, M.

10.1101/442491 — molecular biology — Posted on 2018-10-26

464 Spatial and Temporal Analysis of the Stomach and Small Intestinal Microbiota in Fasted Healthy Humans

Seekatz, A.; Schnizlein, M.; Koenigsknecht, M.; Baker, J.; Hasler, W.; Bleske, B.; Young, V.; Sun, D.

10.1101/450221 — microbiology — Posted on 2018-10-26

465 Bacteriophages dynamically modulate the gut microbiota and metabolome

Hsu, B. B.; Gibson, T. E.; Yeliseyev, V.; Liu, Q.; Bry, L.; Silver, P. A.; Gerber, G. K.

10.1101/454579 — microbiology — Posted on 2018-10-26

466 A reverse-transcription/RNase H based protocol for depletion of mosquito ribosomal RNA facilitates viral intrahost evolution analysis, transcriptomics and pathogen discovery.

Fauver, J. R.; Akter, S.; Morales, A. I. O.; Black, W. C.; Rodriguez, A. D.; Stenglein, M. D.; Ebel, G. D.; Weger-Lucarelli, J.

10.1101/453910 — microbiology — Posted on 2018-10-26

467 Enumeration, Antagonism and Enzymatic Activities of Microorganisms Isolated from Railway Station Soil

Sharma, M.; Kaushik, P.; Chaturvedi, P.

10.1101/454595 — microbiology — Posted on 2018-10-26

468 Stromal fibroblast activation and inflammation in frozen shoulder

Akbar, M.; McLean, M.; Garcia-Melchor, E.; Crowe, L. A.; McMillan, P.; Fazzi, U. G.; Martin, D.; Arthur, A.; Reilly, J. H.; McInnes, I. B.; Millar, N. L.

10.1101/453894 — immunology — Posted on 2018-10-26

469 CTCF looping is established during gastrulation in medaka embryos

Nakamura, R.; Motai, Y.; Kumagai, M.; Nishiyama, H.; Durand, N. C.; Kondo, K.; Kondo, T.; Tsukahara, T.; Shimada, A.; Lieberman Aiden, E.; Morishita, S.; Takeda, H.

10.1101/454082 — genomics — Posted on 2018-10-26

470 Genome-wide association analysis of excessive daytime sleepiness identifies 42 loci that suggest phenotypic subgroups

Wang, H.; Lane, J. M.; Jones, S. E.; Dashti, H. S.; Ollila, H.; Wood, A. R.; van Hees, V. T.; Brumpton, B.; Winsvold, B. S.; Kantojarvi, K.; Cade, B. E.; Sofer, T.; Song, Y.; Patel, K.; Anderson, S. G.; Bechtold, D. A.; Bowden, J.; Emsley, R.; Kyle, S. D.; Little, M. A.; Loudon, A. S.; Scheer, F. A.; Purcell, S. M.; Richmond, R. C.; Spiegelhalder, K.; Tyrrell, J.; Zhu, X.; Kristiansson, K.; Sulkava, S.; Paunio, T.; Hveem, K.; Nielsen, J. B.; Willer, C. J.; Zwart, J.-A.; Strand, L. B.; Frayling, T. M.; Ray, D.; Lawlor, D. A.; Rutter, M. K.; Weedon, M. N.; Redline, S.; Saxena, R.

10.1101/454561 — genomics — Posted on 2018-10-26

471 A Whole-Genome Association Approach for Large-scaled Inter-species Trait

Wu, Q.; Fan, H.; Chen, L.; Hu, Y.; Wei, F.

10.1101/454363 — genomics — Posted on 2018-10-26

472 Fast Hierarchical Bayesian Analysis of Population Structure

Tonkin-Hill, G.; Lees, J. A.; Bentley, S. D.; Frost, S. D. W.; Corander, J.

10.1101/454355 — genomics — Posted on 2018-10-26

473 In vivo selection for corrected {beta}-globin alleles after CRISPR/Cas9 editing in human sickle hematopoietic stem cells enhances therapeutic potential

10.1101/432716 — genetics — Posted on 2018-10-26

474 Population based forward genetic screen of mutagenized zebrafish identifies loci associated with nicotine preference and human smoking behavior

Brock, A. J.; Garcia-Gonzalez, J.; Parker, M. O.; Jolliffe, D.; Sudwarts, A.; Teh, M.-T.; Busch-Nentwich, E. M.; Stemple, D. L.; Martineau, A. R.; Kaprio, J.; Palviainen, T.; Kuan, V.; Walton, R. T.; Brennan, C. H.

10.1101/453928 — genetics — Posted on 2018-10-26

475 Destabilization of chromosome structure by histone H3 lysine 27 methylation

Moeller, M.; Schotanus, K.; Soyer, J.; Haueisen, J.; Happ, K.; Stralucke, M.; Happel, P.; Smith, K. M.; Connolly, L. R.; Freitag, M.; Stukenbrock, E. H.

10.1101/454223 — genetics — Posted on 2018-10-26

476 Biofilm forming capabilities and protein secretion systems distinguish ecologically diverse lineages of Xanthomonas from rice

Bansal, K.; Midha, S.; Kumar, S.; Kaur, A.; Sonti, R. V.; Patil, P. B.

10.1101/453373 — evolutionary biology — Posted on 2018-10-26

477 Caribbean golden orbweaving spiders maintain gene flow with North America

Candek, K.; Agnarsson, I.; Binford, G. J.; Kuntner, M.

10.1101/454181 — evolutionary biology — Posted on 2018-10-26

478 Whatever You Want: Inconsistent Results Is The Rule, Not The Exception, In The Study Of Primate Brain Evolution

Wartel, A.; Lindenfors, P.; Lind, J.

10.1101/454132 — evolutionary biology — Posted on 2018-10-26

479 Increasing phylogenetic stochasticity at high elevations on summits across a remote North American wilderness

Marx, H. E.; Richards, M.; Johnson, G. M.; Tank, D. C.

10.1101/454330 — evolutionary biology — Posted on 2018-10-26

480 The evolution of class-dependent reproductive effort in humans and other animals

Rodrigues, A. M. M.

10.1101/449868 — evolutionary biology — Posted on 2018-10-26

481 Recent invasion of P transposable element into Drosophila yakuba

Serrato-Capuchina, A. G.; Zhang, S.; Martin, W.; Peede, D.; Earley, E.; Matute, D. R.

10.1101/453829 — evolutionary biology — Posted on 2018-10-26

482 Inductive determination of allele frequency spectrum probabilities in structured populations

Uyenoyama, M. K.; Takebayashi, N.; Kumagai, S.

10.1101/454157 — evolutionary biology — Posted on 2018-10-26

483 The convergent evolution of caste in ants and honey bees is based on a shared core of ancient reproductive genes and many plastic genes

Warner, M. R.; Qiu, L.; Holmes, M. J.; Mikheyev, A. S.; Linksvayer, T. A.

10.1101/454645 — evolutionary biology — Posted on 2018-10-26

484 Association between chronic hepatitis C virus infection and myocardial infarction in people living with HIV in the United States

Williams-Nguyen, J.; Hawes, S. E.; Nance, R. M.; Lindström, S.; Heckbert, S. R.; Kim, H. N.; Mathews, W. C.; Cachay, E. R.; Budoff, M. J.; Hurt, C. B.; Hunt, P. W.; Geng, E.; Moore, R. D.; Mugavero, M. J.; Peter, I.; Kitahata, M. M.; Saag, M. S.; Crane, H. M.; Delaney, J. A. A.

10.1101/453860 — epidemiology — Posted on 2018-10-26

485 Association between chronic hepatitis C virus infection and myocardial infarction in people living with HIV in the United States

10.1101/453860 — epidemiology — Posted on 2018-10-26

486 Climate drives spatial variation in Zika epidemics in Latin America

Harris, M. J.; Caldwell, J. M.; Mordecai, E. A.

10.1101/454454 — ecology — Posted on 2018-10-26

487 A Cyclin A - Myb-MuvB - Aurora B network regulates the choice between mitotic cycles and polyploid endoreplication cycles.

Rotelli, M.; Policastro, R. A.; Bolling, A.; Killion, A.; Weinberg, A.; Dixon, M.; Zentner, G. E.; Walczak, C. E.; Lilly, M. A.; Calvi, B. R.

10.1101/449983 — developmental biology — Posted on 2018-10-26

488 Cell-autonomous transcriptional mechanism for enhancement of translation capacity in secretory cells

Khetchoumian, K.; Balsalobre, A.; Mayran, A.; Christian, H.; Chenard, V.; St-Pierre, J.; Drouin, J.

10.1101/454421 — cell biology — Posted on 2018-10-26

489 LC3 and STRAP regulate actin filament assembly by JMY during autophagosome formation

Hu, X.; Mullins, R. D.

10.1101/451393 — cell biology — Posted on 2018-10-26

490 PS membrane asymmetry influences the folding and insertion of a transmembrane helix

Scott, H. L.; Heberle, F. A.; Katsaras, J.; Barrera, F. N.

10.1101/454504 — biophysics — Posted on 2018-10-26

491 Are protein-ligand complexes robust structures?

Majewski, M.; Ruiz Carmona, S.; Barril, X.

10.1101/454165 — biophysics — Posted on 2018-10-26

492 Electrospray sample injection for single-particle imaging with X-ray lasers

Bielecki, J.; Hantke, M. F.; Daurer, B. J.; Reddy, H. K. N.; Hasse, D.; Larsson, D. S. D.; Gunn, L. H.; Svenda, M.; Munke, A.; Sellberg, J. A.; Flueckiger, L.; Pietrini, A.; Nettelblad, C.; Lundholm, I.; Carlsson, G.; Okamoto, K.; Timneanu, N.; Westphal, D.; Kulyk, O.; Higashiura, A.; van der Schot, G.; Loh, D.; Wysong, T. E.; Bostedt, C.; Gorkhover, T.; Iwan, B.; Seibert, M.; Osipov, T.; Walter, P.; Hart, P.; Bucher, M.; Ulmer, A.; Ray, D.; Carini, G.; Ferguson, K. R.; Andersson, I.; Andreasson, J.; Hajdu, J.; Maia, F. R. N. C.

10.1101/453456 — biophysics — Posted on 2018-10-26

493 Rapid Tilt-Series Acquisition for Electron Cryotomography

Chreifi, G.; Chen, S.; Metskas, L. A.; Kaplan, M.; Jensen, G. J.

10.1101/454587 — biophysics — Posted on 2018-10-26

494 Irregular chromatin: packing density, fiber width and occurrence of heterogeneous clusters

Bajpai, G.; Padinhateeri, R.

10.1101/453126 — biophysics — Posted on 2018-10-26

495 Genetic association of photoplethysmography-derived arterial stiffness index with blood pressure and coronary artery disease

Zekavat, S. M.; Haas, M.; Aragam, K.; Emdin, C.; Khera, A. V.; Klarin, D.; Zhao, H.; Natarajan, P.

10.1101/453878 — bioinformatics — Posted on 2018-10-26

496 ebayGSEA: An improved Gene Set Enrichment Analysis method for Epigenome-Wide-Association Studies

Dong, D.; Yuan, T.; Zheng, S. C.; Teschendorff, A.

10.1101/454025 — bioinformatics — Posted on 2018-10-26

497 Genetic distance between complex repeats

Ferretti, L.; Ruiz-Herrera, A.; Ledda, A.

10.1101/443721 — bioinformatics — Posted on 2018-10-26

498 Nearest-neighbor parameter for inosine-cytosine pairs through a combined experimental and computational approach

Sakuraba, S.; Iwakiri, J.; Hamada, M.; Kameda, T.; Tsuji, G.; Kimura, Y.; Abe, H.; Asai, K.

10.1101/454124 — bioinformatics — Posted on 2018-10-26

499 Gene detection models outperform gene expression for large-scale scRNA-seq analysis

Li, R.; Quon, G.

10.1101/454629 — bioinformatics — Posted on 2018-10-26

500 Prediction of environmental response in field-grown rice using expression-dynamics-QTL

Kashima, M.; Sakamoto, R. L.; Saito, H.; Ohkubo, S.; Tezuka, A.; Deguchi, A.; Hashida, Y.; Kurita, Y.; Nagano, A. J.

10.1101/451609 — bioinformatics — Posted on 2018-10-26

501 HLA*PRG:LA - HLA typing from linearly projected graph alignments

Dilthey, A. T.; Mentzer, A. J.; Carapito, R.; Cutland, C.; Cereb, N.; Madhi, S. A.; Rhie, A.; Koren, S.; Bahram, S.; McVean, G.; Phillippy, A. M.

10.1101/453555 — bioinformatics — Posted on 2018-10-26

502 Identifying Emerging Phenomenon in Plant Long Temporal Phenotyping Experiments

Peng, J.; Lu, J.; Hoh, D.; Dina, A.; Shang, X.; Kramer, D.; Chen, J.

10.1101/454686 — bioinformatics — Posted on 2018-10-26

503 Stochastic models of the growth dynamics of some dendritic cells

El-Nadi, K. E.-S.

10.1101/454264 — bioengineering — Posted on 2018-10-26

504 Exonuclease III (XthA) enforces in vivo DNA cloning of Escherichia coli to create cohesive ends

Nozaki, S.; Niki, H.

10.1101/454074 — bioengineering — Posted on 2018-10-26

505 NanoMEA: a versatile platform for high-throughput analysis of structure-function relationships in human stem cell-derived excitable cells and tissues

Smith, A. S. T.; Choi, E.; Gray, K.; Macadangdang, J.; Ahn, E. H.; Clark, E. C.; Tyler, P.; Laflamme, M. A.; Tung, L.; Wu, J. C.; Murry, C. E.; Kim, D.-H.

10.1101/453886 — bioengineering — Posted on 2018-10-26

506 Telomere DNA G-quadruplex folding within actively extending human telomerase

Jansson, L. I.; Parks, J. W.; Hentschel, J.; Chang, T. R.; Baral, R.; Bagshaw, C. R.; Stone, M. D.

10.1101/435545 — biochemistry — Posted on 2018-10-26

507 Rational construction of compact de novo-designed biliverdin-binding proteins

Sheehan, M. M.; Magaraci, M.; Kuznetsov, I. A.; Mancini, J. A.; Kodali, G.; Moser, C. C.; Dutton, P. L.; Chow, B.

10.1101/453779 — biochemistry — Posted on 2018-10-26

508 Structural basis for prodrug recognition by the SLC15 family of proton coupled peptide transporters

Minhas, G. S.; Newstead, S.

10.1101/454116 — biochemistry — Posted on 2018-10-26

509 Red squirrels mitigate costs of territory defence through social plasticity

Siracusa, E.; Wilson, D. R.; Studd, E. K.; Boutin, S.; Humphries, M. M.; Dantzer, B.; Lane, J. E.; McAdam, A. G.

10.1101/453993 — animal behavior and cognition — Posted on 2018-10-26

510 Computer vision and deep learning automates nocturnal rainforest ant tracking to provide insight into behavior and disease risk

Imirzian, N.; Zhang, Y.; Kurze, C.; Loreto, R. G.; Chen, D. Z.; Hughes, D. P.

10.1101/454207 — animal behavior and cognition — Posted on 2018-10-26

511 Shared expression of Crassulacean acid metabolism (CAM) genes predates the origin of CAM in the genus Yucca.

Heyduk, K.; Ray, J. N.; Ayyampalayam, S.; Moledina, N.; Borland, A.; Harding, S.; Tsai, C.-J.; Leebens-Mack, J.

10.1101/371344 — plant biology — Posted on 2018-10-26

512 Cytoarchitecture and Layer Estimation in High-Resolution Neuroanatomical Images

LaGrow, T. J.; Moore, M. G.; Prasad, J. A.; Webber, A.; Davenport, M. A.; Dyer, E. L.

10.1101/445742 — neuroscience — Posted on 2018-10-26

513 Structure reveals mechanism of CRISPR RNA-guided nuclease recruitment and anti-CRISPR viral mimicry

Rollins, M. F.; Chowdhury, S.; Carter, J.; Golden, S. M.; Miettinen, H. M.; Santiago-Frangos, A.; Faith, D.; Lawrence, C. M.; Lander, G. C.; Wiedenheft, B.

10.1101/453720 — molecular biology — Posted on 2018-10-26

514 Polygenic scores for major depressive disorder and depressive symptoms predict response to lithium in patients with bipolar disorder

Amare, A. T.; Schubert, K. O. T.; International Consortium on Lithium Genetics (ConLi+Gen), ; Schulze, T. G.; Baune, B. T.

10.1101/449363 — genomics — Posted on 2018-10-26

515 Non-neutral evolution of H3.3-encoding genes occurs without alterations in protein sequence

Muhire, B. M.; Booker, M. A.; Tolstorukov, M. Y.

10.1101/422311 — evolutionary biology — Posted on 2018-10-26

516 fruitless functions downstream of doublesex to promote sexual dimorphism of the gonad stem cell niche

Zhou, H.; Whitworth, C.; Pozmanter, C.; Van Doren, M.

10.1101/454546 — developmental biology — Posted on 2018-10-26

517 Atlas of Subcellular RNA Localization Revealed by APEX-seq

Fazal, F. M.; Han, S.; Kaewsapsak, P.; Parker, K. R.; Xu, J.; Boettiger, A. N.; Chang, H. Y.; Ting, A. Y.

10.1101/454470 — cell biology — Posted on 2018-10-26

518 Unc 51-like autophagy-activating kinase (ULK1) mediates clearance of free {alpha}-globin in {beta}-thalassemia

Lechauve, C. M.; Keith, J.; Khandros, E.; Fowler, S.; Mayberry, K.; Freiwan, A.; Thom, C. S.; Delbini, P.; Boada Romero, E.; Zhang, J.; Motta, I.; Tillman, H.; Cappellini, M. D.; Kundu, M.; Weiss, M. J.

10.1101/454652 — cell biology — Posted on 2018-10-26

519 Phylogenetic, population genetic, and morphological analyses reveal evidence for one species of Eastern Indigo Snake (Drymarchon couperi)

Folt, B.; Bauder, J.; Spear, S.; Stevenson, D.; Hoffman, M.; Oaks, J.; Jenkins, C.; Steen, D.; Guyer, C.

10.1101/318766 — zoology — Posted on 2018-10-26

520 Evolution of resilience in protein interactomes across the tree of life

Zitnik, M.; Sosic, R.; Feldman, M. W.; Leskovec, J.

10.1101/454033 — systems biology — Posted on 2018-10-26

521 Effects of the Salinity under Soilless Culture Systems on Gamma Linolenic Acid Levels in Borage Seed Oil

Gavilan, M. U.; Gallegos-Cedillo, V. M.; Ferron-Carrillo, F.; Guil-Guerrero, J. L.; Alvaro, J. E.; Lao, M. T.; Miguel Urrestarazu, Victor Manuel Gallegos-Cedillo, Francisca Ferron-Carrillo, Jose Lu,

10.1101/454405 — plant biology — Posted on 2018-10-26

522 Hypermorphic SERK1 mutations function via a SOBIR1 pathway to activate floral abscission signaling

Taylor, I.; Baer, J.; Calcutt, R.; Walker, J. C.

10.1101/453944 — plant biology — Posted on 2018-10-26

523 CropMonitor: a scalable open-source experiment management system for distributed plant phenotyping and IoT-based crop management

Reynolds, D.; Ball, J.; Bauer, A.; Griffiths, S.; Zhou, J.

10.1101/451120 — plant biology — Posted on 2018-10-26

524 Natural depletion of H1 in sex cells causes DNA demethylation, heterochromatin decondensation and transposon activation

He, S.; Vickers, M.; Zhang, J.; Feng, X.

10.1101/451930 — plant biology — Posted on 2018-10-26

525 Visual cue-related activity of cells in the medial entorhinal cortex during navigation in virtual reality

Kinkhabwala, A.; Gu, Y.; Aronov, D.; Tank, D. W.

10.1101/453787 — neuroscience — Posted on 2018-10-25

526 A conserved principle of glial organization in the paleocortex and neocortex

Pinto-Duarte, A.; Sejnowski, T. J.; Srinivasan, S.

10.1101/449421 — neuroscience — Posted on 2018-10-26

527 Speed tuning to real-world- and retinal motion in cortical motion regions

Korkmaz Hacialihafiz, D.; Bartels, A.

10.1101/449256 — neuroscience — Posted on 2018-10-26

528 Causally investigating cortical dynamics and signal processing by targeting natural system attractors with precisely timed stimulation.

Lisitsyn, D.; Ernst, U. A.

10.1101/454538 — neuroscience — Posted on 2018-10-26

529 Subthalamic nucleus local field potentials recordings reveal subtle effects of promised reward during conflict resolution in Parkinson’s disease

Duprez, J.; Houvenaghel, J.-F.; Dondaine, T.; Peron, J.; Haegelen, C.; Drapier, S.; Modolo, J.; Jannin, P.; Verin, M.; Sauleau, P.

10.1101/454173 — neuroscience — Posted on 2018-10-26

530 Neural dynamics at rest associated with patterns of ongoing thought

Karapanagiotidis, T.; Vidaurre, D.; Quinn, A. J.; Vatansever, D.; Poerio, G. L.; Jefferies, E.; Margulies, D. S.; Nichols, T. E.; Woolrich, M. W.; Smallwood, J.

10.1101/454371 — neuroscience — Posted on 2018-10-26

531 Heritability and genetic variance of dementia with Lewy bodies

Guerreiro, R.; Escott-Price, V.; Hernandez, D.; Kun-Rodrigues, C.; Ross, O.; Orme, T.; Neto, J. L.; Carmona, S.; Dehghani, N.; Eicher, J. D.; Shepherd, C.; Parkkinen, L.; Darwent, L.; Heckman, M. G.; Scholz, S.; Troncoso, J.; Pletnikova, O.; Dawson, T.; Rosenthal, L.; Ansorge, O.; Clarimon, J.; Lleo, A.; Morenas-Rodriguez, E.; Clark, L.; Honig, L.; Marder, K.; Lemstra, A.; Rogaeva, E.; St. George-Hyslop, P.; Londos, E.; Zetterberg, H.; Barber, I.; Braae, A.; Brown, K.; Morgan, K.; Troakes, C.; Al-Sarraj, S.; Lashley, T.; Holton, J.; Compta, Y.; Van Deerlin, V.; Serrano, G.; Beach, T.; Lesage,

10.1101/454249 — neuroscience — Posted on 2018-10-26

532 Dendritic spikes expand the range of well-tolerated population noise structures

Poleg-Polsky, A.

10.1101/454215 — neuroscience — Posted on 2018-10-26

533 The thalamus regulates retinoic acid signaling and development of parvalbumin interneurons in postnatal mouse prefrontal cortex

Larsen, R.; Proue, A.; Scott, E. P.; Christiansen, M.; Nakagawa, Y.

10.1101/272427 — neuroscience — Posted on 2018-10-26

534 Differential contributions of subthalamic beta rhythms and neural noise to Parkinson motor symptoms

Martin, S.; Iturrate, I.; Chavarriaga, R.; Leeb, R.; Sobolewski, A.; Li, A. M.; Zaldivar, J.; Peciu-Florianu, I.; Pralong, E.; Castro-Jimenez, M.; Benninger, D.; Vingerhoets, F.; Knight, R. T.; Bloch, J.; Millan, J. d. R.

10.1101/312819 — neuroscience — Posted on 2018-10-26

535 Satb1 integrates DNA sequence, shape, motif density and torsional stress to differentially bind targets in nucleosome-dense regions.

GHOSH, R. P.; SHI, Q.; YANG, L.; REDDICK, M. P.; NIKITINA, T.; ZHURKIN, V. B.; FORDYCE, P.; STASEVICH, T. J.; CHANG, H. Y.; GREENLEAF, W. J.; LIPHARDT, J. T.

10.1101/450262 — molecular biology — Posted on 2018-10-26

536 Golden Mutagenesis: An efficient multi-site saturation mutagenesis approach by Golden Gate cloning with automated primer design

Puellmann, P.; Ulpinnis, C.; Marillonnet, S.; Gruetzner, R.; Neumann, S.; Weissenborn, M. J.

10.1101/453621 — molecular biology — Posted on 2018-10-26

537 Comparison of Small Gut and Whole Gut Microbiota of First-Degree Relatives with Adult Celiac Disease Patients and Controls

Bodkhe, R. L.; Shetty, S. A.; Dhotre, D. P.; Verma, A. K.; Bhatia, K.; Mishra, A.; Kaur, G.; Pande, P.; Bangarusamy, D. K.; Santosh, B. P.; Perumal, R. C.; Ahuja, V.; Shouche, Y. S.; Makharia, G. K.

10.1101/227272 — microbiology — Posted on 2018-10-25

538 The molecular basis of antigenic variation among A(H9N2) avian influenza viruses

Peacock, T. P.; Harvey, W.; Sadeyen, J.-R.; Reeve, R.; Iqbal, M.

10.1101/312967 — microbiology — Posted on 2018-10-26

539 Quantifying the Entropic and Energetic Effects of Linker Length and Rigidity within Synthetic HIV-1 Antibodies designed to Bind Bivalently to Env Spikes

Galimidi, R. P.; Einav, T.; Gnanapragasam, P. N. P.; Joshi, D. S.; Lynch, A. M.; Yazdi, S.; West, A. P.; Phillips, R.; Bjorkman, P. J.

10.1101/406454 — immunology — Posted on 2018-10-25

540 Whole genome sequencing Mycobacterium tuberculosis directly from sputum identifies more genetic diversity than sequencing from culture

Nimmo, C.; Shaw, L. P.; Doyle, R.; Williams, R.; Brien, K.; Burgess, C.; Breuer, J.; Balloux, F.; Pym, A. S.

10.1101/446849 — genomics — Posted on 2018-10-25

541 Proximity RNA labeling by APEX-Seq Reveals the Organization of Translation Initiation Complexes and Repressive RNA Granules

Padron, A.; Iwasaki, S.; Ingolia, N.

10.1101/454066 — genomics — Posted on 2018-10-25

542 Microbiota-metabolites interactions in non-human primate gastrointestinal tract

Yuan, C.; Graham, M.; Subramanian, S.

10.1101/454496 — genomics — Posted on 2018-10-26

543 Inference of the worldwide invasion routes of the pinewood nematode, Bursaphelenchus xylophilus, using ABC analysis on microsatellite data

Mallez, S.; Castagnone, C.; Lombaert, E.; Castagnone-Sereno, P.; Guillemaud, T.

10.1101/452326 — genetics — Posted on 2018-10-25

544 Inference of recombination maps from a single pair of genomes and its application to archaic samples

Valadares Barroso, G.; Puzovic, N.; Dutheil, J.

10.1101/452268 — evolutionary biology — Posted on 2018-10-25

545 Sex allocation conflict and sexual selection throughout the lifespan of eusocial colonies

Avila, P.; Fromhage, L.; Gonzales-Forero, M.; Lehmann, L.

10.1101/454512 — evolutionary biology — Posted on 2018-10-26

546 Bayesian learning ecosystem dynamics with delayed dependencies from incomplete multiple source data : an application to plant epidemiology

Dupas, S.

10.1101/453050 — epidemiology — Posted on 2018-10-26

547 The Maudsley Environmental Risk Score for Psychosis

Vassos, E.; Sham, P.; Kempton, M.; Trotta, A.; Stilo, S. A.; Gayer-Anderson, C.; Di Forti, M.; Lewis, C. M.; Murray, R.; Morgan, C.

10.1101/453936 — epidemiology — Posted on 2018-10-26

548 Feeding the disparities: the geography and trends of breastfeeding in the United States

Garnier, R.; Bento, A. I.; Rohani, P.; Omer, S. B.; Bansal, S.

10.1101/451435 — epidemiology — Posted on 2018-10-26

549 The Swiss Primary Ciliary Dyskinesia registry: objectives, methods and first results

Goutaki, M.; Eich, M.; Halbeisen, F.; Barben, J.; Casaulta, C.; Clarenbach, C.; Hafen, G.; Latzin, P.; Regamey, N.; Lazor, R.; Tschanz, S.; Zanolari, M.; Maurer, E.; Kuehni, C.

10.1101/450700 — epidemiology — Posted on 2018-10-26

550 Seasonal patterns of dengue fever in rural Ecuador: 2009-2016

Sippy, R. J.; Gaus, D.; Herrera, D.; Gangnon, R.; Patz, J.; Osorio, J.

10.1101/452318 — epidemiology — Posted on 2018-10-26

551 Perfect Counterfactuals for Epidemic Simulations

Kaminsky, J.; Keegan, L. T.; Metcalf, C. J. E.; Lessler, J.

10.1101/451153 — epidemiology — Posted on 2018-10-26

552 Translating surveillance data into incidence estimates

Bourhis, Y.; Gottwald, T. R.; van den Bosch, F.

10.1101/443952 — epidemiology — Posted on 2018-10-26

553 Resistance diagnostics as a public health tool to combat antibiotic resistance: A model-based evaluation

McAdams, D.; Wollein Waldetoft, K.; Tedijanto, C.; Lipsitch, M.; Brown, S. P.

10.1101/452656 — epidemiology — Posted on 2018-10-26

554 Alcohol consumption is associated with widespread changes in blood DNA methylation: analysis of cross-sectional and longitudinal data

DUGUE, P.-A.; Wilson, R.; Lehne, B.; Jayasekara, H.; Wang, X.; JUNG, C.-H.; Joo, J. E.; Makalic, E.; Schmidt, D. F.; Baglietto, L.; Severi, G.; Gieger, C.; Ladwig, K.-H.; Peters, A.; kooner, j. s.; Southey, M.; English, D.; Waldenberger, M.; Chambers, J. C.; Giles, G.; Milne, R.

10.1101/452953 — epidemiology — Posted on 2018-10-26

555 Nutritional status and morbidity profile of children with contact to leprosy in the rural community.

Venkatakrishnan, Y.; THANGARAJU, P.; Jeganathan, S.; Sankaran, S. K.; Kannan, R.

10.1101/452995 — epidemiology — Posted on 2018-10-26

556 Variation in tolerance to parasites in natural Asian tiger mosquito populations and its effect on vectorial capacity

Dharmarajan, G.; Walker, K. D.; Lehmann, T.

10.1101/445759 — ecology — Posted on 2018-10-25

557 A comparison of visual features used by humans and machines to classify wildlife

Miao, Z.; Gaynor, K. M.; Wang, J.; Liu, Z.; Muellerklein, O.; Norouzzadeh, M. S.; McInturff, A.; Bowie, R. C. K.; Nathon, R.; Yu, S. X.; Getz, W. M.

10.1101/450189 — ecology — Posted on 2018-10-25

558 Multi-Center Study of Resectable Lung Lesions by Ultra-Deep Sequencing of Targeted Genes in Plasma Cell-Free DNA to Assess Nodule Malignancy and Detect Lung Cancers

Peng, M.; Xie, Y.; Li, X.; Qian, Y.; Tu, X.; Yao, X.; Cheng, F.; Xu, F.; Kong, D.; He, B.; Liu, C.; Cao, F.; Yang, H.; He, J.; Yu, F.; Xu, C.; Tian, G.

10.1101/453803 — clinical trials — Posted on 2018-10-26

559 A Stu2-mediated intrinsic tension-sensing pathway promotes chromosome biorientation in vivo

Miller, M. P.; Evans, R.; Zelter, A.; Geyer, E.; MacCoss, M.; Rice, L.; Davis, T.; Asbury, C.; Biggins, S.

10.1101/453811 — cell biology — Posted on 2018-10-25

560 Nuclear filamentous actin functions in the replication stress response

Lamm, N.; Masamsetti, V. P.; Read, M. N.; Biro, M.; Cesare, A. J.

10.1101/451708 — cell biology — Posted on 2018-10-25

561 Bright split red fluorescent proteins with enhanced complementation efficiency for the tagging of endogenous proteins and visualization of synapses

Feng, S.; Varshney, A.; Coto Villa, D.; Modavi, C.; Kohler, J.; Farah, F.; Ali, N.; Mueller, J. D.; VanHoven, M.; Huang, B.

10.1101/454041 — cell biology — Posted on 2018-10-25

562 Procyclic Trypanosoma brucei cell cycle is impaired at the G1 stage by the presence of poly(ADP-ribose) in the nucleus

Schlesinger, M.; Vilchez Larrea, S. C.; Fernandez Villamil, S. H.

10.1101/452730 — cell biology — Posted on 2018-10-25

563 Elevated expression of LGR5 and WNT signalling factors in neuroblastoma cells with acquired drug resistance

Myssina, S.; Michaelis, M.; Cinatl, J.; Clark-Corrigall, J.; Ahmed, S. U.; Carr-Wilkinson, J.

10.1101/449785 — cancer biology — Posted on 2018-10-25

564 In vitro model of inflammatory, hypoxia, and cancer stem cell signaling in pancreatic cancer using heterocellular 3-dimensional spheroids

Sursh, M.; Mattheolabakis, G.; Singh, A.; Amiji, M. M.

10.1101/454397 — cancer biology — Posted on 2018-10-26

565 Evolutionary exploitation of PD-L1 expression in hormone receptor positive breast cancer

West, J.; Park, D.; Harmon, C.; Williamson, D.; Ashcroft, P.; Maestrini, D.; Ardaseva, A.; Bravo, R.; Sahoo, P.; Khong, H.; Luddy, K.; Robertson-Tessi, M.

10.1101/454447 — cancer biology — Posted on 2018-10-26

566 Reducing the impact of transient effects in rate-constant estimation using the weighted ensemble strategy

DeGrave, A. J.; Chong, L. T.

10.1101/453647 — biophysics — Posted on 2018-10-25

567 Bipolar spindle formation is a fast, irreversible process requiring Kinesin-5 crosslinking and sliding modalities

Leary, A.; Nazarova, E.; Sim, S.; Shulist, K.; Francois, P.; Vogel, J.

10.1101/452821 — biophysics — Posted on 2018-10-25

568 Crop Information Engine and Research Assistant (CIERA) for managing genealogy, phenotypic and genotypic data for breeding programs

Yates, S.; Lague, M.; Knox, R.; Cuthbert, R.; Clarke, F.; Clarke, J.; Ruan, Y.; Sangha, J.; Bhadauria, V.

10.1101/439505 — bioinformatics — Posted on 2018-10-26

569 Discovery of perturbation gene targets via free text metadata mining in Gene Expression Omnibus

Djordjevic, D.; Tang, J. Y. S.; Chen, Y. X.; Kwan, S. L. S.; Ling, R. W. K.; Qian, G.; Woo, C. Y. Y.; Ellis, S. J.; Ho, J. W. K.

10.1101/150896 — bioinformatics — Posted on 2018-10-26

570 Validation of a low-cost, carbon dioxide-based cryoablation system for percutaneous tumor ablation

Surtees, B.; Young, S.; Hu, Y.; Wang, G.; McChesney, E.; Kuroki, G.; Acree, P.; Thomas, S.; Blair, T.; Rastogi, S.; Kraitchman, D. L.; Weiss, C.; Sukumar, S.; Harvey, S. C.; Durr, N. J.

10.1101/454413 — bioengineering — Posted on 2018-10-26

571 Wakeful rest benefits memory when materials can be rehearsed

Millar, P. R.; Balota, D. A.

10.1101/449835 — animal behavior and cognition — Posted on 2018-10-25

572 TADs pair homologous chromosomes to promote interchromosomal gene regulation

Viets, K.; Sauria, M.; Chernoff, C.; Anderson, C.; Tran, S.; Dove, A.; Goyal, R.; Voortman, L.; Gordus, A.; Taylor, J.; Johnston, R. J.

10.1101/445627 — molecular biology — Posted on 2018-10-25

573 SArKS: de novo discovery of gene expression regulatory motifs and domains by suffix array kernel smoothing

Wylie, D. C.; Hofmann, H. A.; Zemelman, B. V.

10.1101/133934 — bioinformatics — Posted on 2018-10-25

574 Environmental oscillations favor the evolution of adaptive transgenerational plasticity

Colicchio, J.; Herman, J. J.

10.1101/426007 — ecology — Posted on 2018-10-25

575 Topographical cues control the morphology and dynamics of migrating cortical interneurons

Leclech, C.; Renner, M.; Villard, C.; Metin, C.

10.1101/452359 — cell biology — Posted on 2018-10-25

576 High-fat diet intake modulates maternal intestinal adaptations to pregnancy, and results in placental hypoxia and impaired fetal gut development

Gohir, W.; Kennedy, K. M.; Wallace, J. G.; Saoi, M.; Bellissimo, C. J.; Britz-McKibbin, P.; Petrik, J. J.; Surette, M. G.; Sloboda, D. M.

10.1101/436816 — developmental biology — Posted on 2018-10-25

577 Distinct pathogenic genes causing intellectual disability and autism exhibit overlapping effects on neuronal network development

Frega, M.; Selten, M.; Mossink, B.; Keller, J. M.; Linda, K.; Moerschen, R.; Qu, J.; Koerner, P.; Jansen, S.; Bijvank, E.; Oudakker, A.; Kleefstra, T.; van Bokhoven, H.; Zhou, H.; Schubert, D.; Nadif Kasri, N.

10.1101/408252 — neuroscience — Posted on 2018-10-25

578 Abnormal LTR retrotransposons formed by the recombination outside the host genome

Zeng, F.; Sun, Z.

10.1101/452573 — genetics — Posted on 2018-10-25

579 CENP-A associated lncRNAs influence chromosome segregation in human cells

Quenet, D.; Sturgill, D.; Olson, M.; Dalal, Y.

10.1101/097956 — cell biology — Posted on 2018-10-25

580 Exchange catalysis during anaerobic methanotrophy revealed by 12CH2D2 & 13CH3D in methane

Ash, J. L.; Egger, M.; Treude, T.; Kohl, I.; Cragg, B.; Parkes, R. J.; Slomp, C. P.; Sherwood Lollar, B.; Young, E. D.

10.1101/377531 — biochemistry — Posted on 2018-10-25

581 Orbitofrontal neuron ensembles contribute to inhibitory control

Balasubramani, P. P.; Hayden, B.

10.1101/452938 — neuroscience — Posted on 2018-10-25

582 SKA: Split Kmer Analysis Toolkit for Bacterial Genomic Epidemiology

Harris, S. R.

10.1101/453142 — genomics — Posted on 2018-10-25

583 Tertiary structural motif sequence statistics enable facile prediction and design of peptides that bind anti-apoptotic Bfl-1 and Mcl-1

Frappier, V.; Jenson, J. M.; Zhou, J.; Grigoryan, G.; Keating, A. E.

10.1101/425926 — biophysics — Posted on 2018-10-25

584 A new method for enamel amino acid racemization dating: a closed system approach

Dickinson, M. R.; Lister, A. M.; Penkman, K. E. H.

10.1101/453340 — paleontology — Posted on 2018-10-25

585 Amygdala neuronal ensembles dynamically encode behavioral states

Gründemann, J.; Bitterman, Y.; Lu, T.; Krabbe, S.; Grewe, B. F.; Schnitzer, M. J.; Lüthi, A.

10.1101/425736 — neuroscience — Posted on 2018-10-25

586 Shared heritability and functional enrichment across six solid cancers

Jiang, X.; Finucane, H.; Schumacher, F.; Schmit, S.; Tyrer, J.; Han, Y.; Michailidou, K.; Lesseur, C.; Kuchenbaecker, K.; Dennis, J.; Conti, D.; Casey, G.; Gaude, M.; Huyghe, J.; Albanes, D.; Aldrich, M.; Andrew, A.; Andrulis, I.; Anton-Culver, H.; Antoniou, A.; Antonenkova, N.; Arnold, S.; Aronson, K.; Arun, B.; Bandera, E.; Barkardottir, R.; Barnes, D.; Batra, J.; Beckmann, M.; Benitez, J.; Benlloch, S.; Berchuck, A.; Berndt, S.; Bickeboller, H.; Bien, S.; Blomqvist, C.; Boccia, S.; Bogdanova, N.; Bojesen, S.; Bolla, M.; Brauch, H.; Brenner, H.; Brenton, J.; Brook, M.; Brunet, J.; Brunnstrom

10.1101/453480 — genomics — Posted on 2018-10-25

587 Global biogeography of Tetragnatha spiders reveals multiple colonization of the Caribbean

Candek, K.; Agnarsson, I.; Binford, G. J.; Kuntner, M.

10.1101/452227 — evolutionary biology — Posted on 2018-10-25

588 Genomic differentiation is initiated without physical linkage among targets of divergent selection in Fall armyworms

NAM, K.; Nhim, S.; Robin, S.; Bretaudeau, A.; Negre, N.; dAlencon, E.

10.1101/452870 — evolutionary biology — Posted on 2018-10-25

589 Drug Repurposing: The Anthelmintics Niclosamide and Nitazoxanide are Potent TMEM16A Antagonists that Fully Bronchodilate Airway

10.1101/254888 — physiology — Posted on 2018-10-25

590 How non-veridical perception drives actions in healthy humans - Evidence from Synaesthesia

Schreiter, M. L.; Chmielewski, W. X.; Ward, J.; Beste, C.

10.1101/453134 — neuroscience — Posted on 2018-10-25

591 Patterned expression of Pannexin 1 channels in the adult cerebellar Purkinje cells

Visou, A.; Dubayle, D.; Le Blanc, P.; Shestopalov, V.; Meunier, C.; Levenes, C.

10.1101/453738 — neuroscience — Posted on 2018-10-25

592 Unraveling intra- and intersegmental neuronal connectivity between central pattern generating networks in a multi-legged locomotor system

Daun, S.; Mantziaris, C.; Toth, T.; Bueschges, A.; Rosjat, N.

10.1101/453423 — neuroscience — Posted on 2018-10-25

593 Bayesian inference of neuronal ensembles

Diana, G.; Sainsbury, T. T. J.; Meyer, M. P.

10.1101/452557 — neuroscience — Posted on 2018-10-25

594 Integrity and stability of virulence plasmids from Pseudomonas syringae are modulated by mobile genetic elements and multiple toxin-antitoxin systems

Bardaji, L.; Anorga, M.; Echeverria, M.; Ramos, C.; Murillo, J.

10.1101/453399 — microbiology — Posted on 2018-10-25

595 The Sicilian wolf: genetic identity of a recently extinct insular population

Angelici, F. M.; Ciucani, M. M.; Angelini, S.; Annesi, F.; Caniglia, R.; Castiglia, R.; Fabbri, E.; Galaverni, M.; Palumbo, D.; Ravegnini, G.; Rossi, L.; Siracusa, A. M.; Cilli, E.

10.1101/453365 — genetics — Posted on 2018-10-25

596 Different macroevolutionary routes to becoming a biodiversity hotspot

Igea, J.; Tanentzap, A. J.

10.1101/452128 — evolutionary biology — Posted on 2018-10-25

597 A comprehensive analysis of the usability and archival stability of omics computational tools and resources

Mangul, S.; Mosqueiro, T.; Duong, D.; Mitchell, K.; Sarwal, V.; Hill, B.; Brito, J.; Littman, R.; Statz, B.; Lam, A.; Dayama, G.; Grieneisen, L.; Martin, L.; Flint, J.; Eskin, E.; Blekhman, R.

10.1101/452532 — bioinformatics — Posted on 2018-10-25

598 The art of using t-SNE for single-cell transcriptomics

Kobak, D.; Berens, P.

10.1101/453449 — bioinformatics — Posted on 2018-10-25

599 An enriched network motif family regulates multistep cell fate transitions with restricted reversibility

Ye, Y.; Bailey, J.; Li, C.; Hong, T.

10.1101/453522 — systems biology — Posted on 2018-10-25

600 Altered protein quality control contributes to noise-induced hearing loss

Jongkamonwiwat, N.; Wong, A.; Pak, K.; Ramirez, M.; Wang, Y.-Z.; Ryan, A.; Savas, J.

10.1101/452698 — neuroscience — Posted on 2018-10-25

601 Cingulate dependent social risk assessment in rats

Han, Y.; Bruls, R.; Thomas, R. M.; Pentaraki, V.; Jelinek, N.; Heinemans, M.; Bassez, I.; Verschooren, S.; Pruis, I.; van Lierde, T.; Carrillo, N.; Gazzola, V.; Carrillo, M.; Keysers, C.

10.1101/452169 — neuroscience — Posted on 2018-10-25

602 Extending FreeSurfer to estimate sulcal morphology

Madan, C. R.

10.1101/452789 — neuroscience — Posted on 2018-10-25

603 Predictive coding with neural transmission delays: a real-time temporal alignment hypothesis

Hogendoorn, H.; Burkitt, A. N.

10.1101/453183 — neuroscience — Posted on 2018-10-25

604 Local epigenomic state cannot discriminate interacting and non-interacting enhancer-promoter pairs with high accuracy

Xi, W.; Beer, M. A.

10.1101/420372 — genomics — Posted on 2018-10-25

605 Novel genome-wide associations for suicidality in UK Biobank, genetic correlation with psychiatric disorders and polygenic association with completed suicide.

Strawbridge, R. J.; Ward, J.; Ferguson, A.; Graham, N.; Shaw, R. J.; Cullen, B.; Pearsall, R.; Lyall, L. M.; Johnston, K. J. A.; Niedzwiedz, C. L.; Pell, J. P.; Mackay, D.; Lagan Martin, J.; Lyall, D. M.; Bailey, M. E. S.; Smith, D.

10.1101/451971 — genetics — Posted on 2018-10-25

606 Impact of mutation rate and selection at linked sites on fine-scale DNA variation across the homininae genome

Castellano, D.; Eyre-Walker, A.; Munch, K.

10.1101/452201 — evolutionary biology — Posted on 2018-10-25

607 Phytoplankton thermal responses adapt in the absence of hard thermodynamic constraints

Kontopoulos, D. - G.; van Sebille, E.; Lange, M.; Yvon-Durocher, G.; Barraclough, T. G.; Pawar, S.

10.1101/452250 — evolutionary biology — Posted on 2018-10-25

608 Bacterial contribution to genesis of the novel germ line determinant oskar

Blondel, L.; Jones, T. E. M.; Extavour, C. G.

10.1101/453514 — evolutionary biology — Posted on 2018-10-25

609 Asymmetric dispersal is a critical element of concordance between biophysical dispersal models and spatial genetic structure in Great Barrier Reef corals

Riginos, C.; Hock, K.; Matias, A. M. M. A.; Mumby, P. J.; van Oppen, M. J. H.; Lukoschek, V.

10.1101/453001 — ecology — Posted on 2018-10-25

610 Comprehensive understanding of population structure and adaptation through graphical representation of gene-environment-trait associations

Nakamichi, R.; Kitada, S.; Kishino, H.

10.1101/452581 — bioinformatics — Posted on 2018-10-25

611 Probabilistic modeling of personalized drug combinations from integrated chemical screen and molecular data in sarcoma

Berlow, N. E.; Rikhi, R.; Geltzeiler, M. N.; Abraham, J.; Svalina, M. N.; Davis, L. E.; Wise, E.; Mancini, M.; Noujaim, J.; Mansoor, A.; Quist, M. J.; Matlock, K. L.; Goros, M. W.; Hernandez, B. S.; Duong, Y. C.; Thway, K.; Tsukahara, T.; Nishio, J.; Huang, E. C.; Airhart, S.; Bult, C. J.; Gandour-Edwards, R.; Maki, R. G.; Jones, R. L.; Michalek, J. E.; Milovancev, M.; Ghosh, S.; Pal, R.; Keller, C.

10.1101/396358 — bioinformatics — Posted on 2018-10-25

612 ClassificaIO: machine learning for classification graphical user interface

Roushangar, R.; Mias, G. I.

10.1101/240184 — bioinformatics — Posted on 2018-10-25

613 Risk aversion in macaques in a freely moving patch-leaving foraging task

Eisenreich, B.; Hayden, B. Y.

10.1101/452151 — animal behavior and cognition — Posted on 2018-10-25

614 Spontaneous intake and long-term effects of essential oils after a negative postnatal experience in chicks

Guilloteau, L.; Collin, A.; Koch, A.; Leterrier, C.

10.1101/452136 — animal behavior and cognition — Posted on 2018-10-25

615 Access schedules mediate the impact of high fat diet on ethanol intake in mice.

Coker, C. R.; Aguilar, E. A.; Snyder, A. E.; Bingaman, S. S.; Graziane, N. M.; Browning, K. N.; Arnold, A. C.; Silberman, Y.

10.1101/453761 — animal behavior and cognition — Posted on 2018-10-25

616 The Ca2+-activated Cl- current ensures robust and reliable signal amplification in vertebrate olfactory receptor neurons

Reisert, J.; Reingruber, J.

10.1101/453308 — neuroscience — Posted on 2018-10-25

617 Dopamine modulation of prefrontal cortex activity is manifold and operates at multiple temporal and spatial scales

Lohani, S.; Martig, A. K.; Deisseroth, K.; Witten, I.; Moghaddam, B.

10.1101/452862 — neuroscience — Posted on 2018-10-25

618 The CRUNCH model does not account for load-dependent changes in visuospatial working memory in older adults: Evidence for the file-drawer problem in neuroimaging

Jamadar, S.

10.1101/451492 — neuroscience — Posted on 2018-10-25

619 Homeostatic plasticity rules control the wiring of axo-axonic synapses at the axon initial segment

Pan-Vazquez, A.; Wefelmeyer, W.; Gonzalez Sabater, V.; Burrone, J.

10.1101/453753 — neuroscience — Posted on 2018-10-25

620 ADHD: relation between cognitive characteristics and DAT1 / DRD4 dopamine polymorphisms

Pinto-Dussan, M. C.; Avila-Campos, J. E.; Polanco, A.; Vasquez, R.; Arboleda, H.

10.1101/452805 — neuroscience — Posted on 2018-10-25

621 Stimulus domain transfer in recurrent models for large scale cortical population prediction on video

Sinz, F. H.; Ecker, A. S.; Fahey, P. G.; Walker, E. Y.; Cobos, E.; Froudarakis, E.; Yatsenko, D.; Pitkow, X.; Reimer, J.; Tolias, A. S.

10.1101/452672 — neuroscience — Posted on 2018-10-25

622 Cortical subnetworks encode context of a visual stimulus

Hamm, J. P.; Shymkiv, Y.; Han, S.; Yang, W.; Yuste, R.

10.1101/452219 — neuroscience — Posted on 2018-10-25

623 Demethylmenaquinone methyl transferase is a membrane domain-associated protein essential for menaquinone homeostasis in Mycobacterium smegmatis

Puffal, J.; Mayfield, J. A.; Moody, D. B.; Morita, Y. S.

10.1101/452839 — microbiology — Posted on 2018-10-25

624 Activation of SEDS-PBP cell wall synthases by an essential regulator of bacterial division

Lariviere, P. J.; Mahone, C. R.; Santiago-Collazo, G.; Howell, M.; Daitch, A. K.; Zeinert, R.; Chien, P.; Brown, P. J.; Goley, E. D.

10.1101/453415 — microbiology — Posted on 2018-10-25

625 Integrating molecular markers and environmental covariates to interpret genotype by environment interaction in rice (Oryza sativa L.) grown in temperate areas

Monteverde, E.; Guterrez, L.; Blanco, P.; Perez de Vida, F.; Rosas, J.; Bonnecarrere, V.; Quero, G.; McCouch, S. R.

10.1101/453712 — genomics — Posted on 2018-10-25

626 Different factors shape pigmentation and other physiological trait variation within and between species in the Drosophila americana group.

Davis, J.; Moyle, L.

10.1101/453571 — evolutionary biology — Posted on 2018-10-25

627 Identifying loci under positive selection in complex population histories

Refoyo-Martinez, A.; da Fonseca, R. R.; Halldorsdottir, K.; Arnason, E.; Mailund, T.; Racimo, F.

10.1101/453092 — evolutionary biology — Posted on 2018-10-25

628 Efficiency of island homing by sea turtles under multimodal navigating strategies

Painter, K.; Plochocka, A. Z.

10.1101/453431 — animal behavior and cognition — Posted on 2018-10-25

629 Genetic distance and social compatibility in the aggregation behavior of Japanese toad tadpoles

Hase, K.; Abe, M. S.; Shimada, M.

10.1101/453316 — animal behavior and cognition — Posted on 2018-10-25

630 Long Range Order and Short Range Disorder in Saccharomyces cerevisiae Biofilm

Piras, V.; Chiow, A.; Selvarajoo, K.

10.1101/451062 — systems biology — Posted on 2018-10-25

631 Cyclic, condition-independent activity in primary motor cortex predicts corrective movement behavior

Rouse, A. G.

10.1101/453746 — neuroscience — Posted on 2018-10-25

632 Sparse Coding with a Somato-Dendritic Rule

Drix, D.; Hafner, V. V.; Schmuker, M.

10.1101/451955 — neuroscience — Posted on 2018-10-25

633 3-D navigation: A core driver of brain plasticity in video game interventions

Kuehn, S.; Becker, M.; Gallinat, J.

10.1101/453613 — neuroscience — Posted on 2018-10-25

634 A model of ganglion axon pathways accounts for percepts elicited by retinal implants

Beyeler, M.; Nanduri, D.; Weiland, J. D.; Rokem, A.; Boynton, G. M.; Fine, I.

10.1101/453035 — neuroscience — Posted on 2018-10-25

635 Hippocampal theta bursting and waveform shape reflect CA1 spiking patterns

Cole, S. R.; Voytek, B.

10.1101/452987 — neuroscience — Posted on 2018-10-25

636 Bacterial T6SS Effector EvpP Inhibits Neutrophil Recruitment via Jnk-Caspy Inflammasome Signaling In vivo

Tan, J.; Yang, D.; Wang, Z.; Zheng, X.; Zhang, Y.; Liu, Q.

10.1101/453076 — microbiology — Posted on 2018-10-25

637 Amplicon deep sequencing of low-density Plasmodium falciparum infections: an evaluation of analysis approaches

Early, A. M.; Daniels, R. F.; Farrell, T. M.; Volkman, S. K.; Wirth, D. F.; MacInnis, B. L.; Neafsey, D. E.

10.1101/453472 — microbiology — Posted on 2018-10-25

638 DNA motifs are not general predictors of recombination in two Drosophila sister species.

Howie, J. M.; Mazzucco, R.; Taus, T.; Nolte, V.; Schlotterer, C.

10.1101/453639 — genomics — Posted on 2018-10-25

639 Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank

Tachmazidou, I.; Hatzikotoulas, K.; Southam, L.; Esparza-Gordillo, J.; Haberland, V.; Zheng, J.; Johnson, T.; Koprulu, M.; Zengini, E.; Steinberg, J.; Wilkinson, J. M.; Bhatnagar, S.; Hoffman, J.; Buchan, N.; Suveges, D.; Consortium, a.; Yerges Armstrong, L.; Davey Smith, G.; Gaunt, T. R.; Scott, R. A.; McCarthy, L. C.; Zeggini, E.

10.1101/453530 — genetics — Posted on 2018-10-25

640 Characterizing noncompliance in conservation: a multidimensional Randomized Response Technique for multinomial responses.

Cerri, J.; Scuffi, L.; Nocita, A.; Zaccaroni, M.; Lenuzza, A.; Cruyff, M.

10.1101/453159 — ecology — Posted on 2018-10-25

641 ETDB-Caltech: a blockchain-based distributed public database for electron tomography

Ortega, D. R.; Oikonomou, C. M.; Ding, H. J.; Rees-Lee, P.; Alexandria, ; Jensen, G. J.

10.1101/453662 — cell biology — Posted on 2018-10-25

642 Inference of splicing motifs through visualization of recurrent networks

Dutta, A.; Dalmia, A.; R, A.; Singh, K. K.; Anand, A.

10.1101/451906 — bioinformatics — Posted on 2018-10-25

643 Protein aggregation capture on microparticles enables multi-purpose proteomics sample preparation

Batth, T. S.; Tollenaere, M. A. X.; Ruther, P. L.; Gonzalez-Franquesa, A.; Prabhakar, B. S.; Bekker-Jensen, S. H.; Deshmukh, A. S.; Olsen, J. V.

10.1101/447904 — biochemistry — Posted on 2018-10-25

644 Testosterone drives status-specific patterns of cooperation and transmission of behavior in a social network

Ryder, T. B.; Dakin, R.; Vernasco, B. J.; Evans, B. S.; Horton, B. M.; Moore, I. T.

10.1101/453548 — animal behavior and cognition — Posted on 2018-10-25

645 Baseline corticosterone does not reflect iridescent plumage traits in female tree swallows

Sarpong, K.; Madliger, C. L.; Harris, C. M.; Love, O. P.; Doucet, S. M.; Bitton, P.-P.

10.1101/452029 — zoology — Posted on 2018-10-25

646 N-terminal β-strand underpins biochemical specialization of an ATG8 isoform

Zess, E. K.; Jensen, C.; Cruz-Mireles, N.; De la Concepcion, J. C.; Sklenar, J.; Imre, R.; Roitinger, E.; Hughes, R.; Belhaj, K.; Mechtler, K.; Menke, F.; Bozkurt, T.; Banfield, M.; Kamoun, S.; Maqbool, A.; Dagdas, Y.

10.1101/453563 — plant biology — Posted on 2018-10-25

647 Reliability and Generalizability of Similarity-Based Fusion of MEG and fMRI Data in Human Ventral and Dorsal Visual Streams

Mohsenzadeh, Y.; Mullin, C.; Lahner, B.; Cichy, R. M.; Oliva, A.

10.1101/451526 — neuroscience — Posted on 2018-10-25

648 Evaluation of FlowVR: a virtual reality game for improvement of depressive mood

Bittner, L.; Mostajeran, F.; Steinicke, F.; Gallinat, J.; Kühn, S.

10.1101/451245 — neuroscience — Posted on 2018-10-25

649 HERV-K HML-2 transcription in diverse cancers is related with cancer stem cell and epithelial-mesenchymal transition markers

Lin, A. T.; Santander, C. G.; Nascimento, F. F.; Marchi, E.; Karamitros, T.; Katzourakis, A.; Magiorkinis, G.

10.1101/451997 — bioinformatics — Posted on 2018-10-25

650 A Cyclin A - Myb-MuvB - Aurora B network regulates the choice between mitotic cycles and polyploid endoreplication cycles.

Rotelli, M.; Policastro, R. A.; Bolling, A.; Killion, A.; Weinberg, A.; Dixon, M.; Zentner, G. E.; Walczak, C. E.; Lilly, M. A.; Calvi, B. R.

10.1101/449983 — developmental biology — Posted on 2018-10-25

651 Systems therapeutics analyses identify genomic signatures defining responsiveness to allopurinol and combination therapy for lung cancer

Tavassoly, I.; Hu, Y.; Zhao, S.; Mariottini, C.; Boran, A.; Chen, Y.; Li, L.; Tolentino, R. E.; Jayaraman, G.; Goldfarb, J.; Gallo, J.; Iyengar, R.

10.1101/396697 — systems biology — Posted on 2018-10-25

652 YAP1 Oncogene is a Context-specific Driver for Pancreatic Ductal Adenocarcinoma

Tu, B.; Yao, J.; Ferri-Borgogno, S.; Zhao, J.; Chen, S.; Wang, Q.; Yan, L.; Zhou, X.; Zhu, C.; Bang, S.; Chang, Q.; Bristow, C. A.; Kang, Y.; Zheng, H.; Wang, H.; Fleming, J. B.; Kim, M.; Draetta, G. F.; Pan, D.; Maitra, A.; Yao, W.; Gupta, S.; Ying, H.

10.1101/270314 — cancer biology — Posted on 2018-10-25

653 Neurons of the inferior olive respond to broad classes of sensory input while subject to homeostatic control

Ju, C.; Bosman, L. W.; Hoogland, T. M.; Velauthapillai, A.; Murugesan, P.; Warnaar, P.; Negrello, M.; De Zeeuw, C. I.

10.1101/379149 — neuroscience — Posted on 2018-10-25

654 Drosophila kinesin-8 stabilises kinetochore-microtubule interaction

Edzuka, T.; Goshima, G.

10.1101/363150 — cell biology — Posted on 2018-10-25

655 Resolving the origins of membrane phospholipid biosynthesis genes using outgroup-free rooting

Coleman, G. A.; Pancost, R. D.; Williams, T. A.

10.1101/312991 — evolutionary biology — Posted on 2018-10-25

656 National and Regional Influenza-Like-Illness Forecasts for the USA

Ben-Nun, M.; Riley, P.; Turtle, J.; Bacon, D.; Riley, S.

10.1101/309021 — epidemiology — Posted on 2018-10-25

657 Information Flow in Planar Polarity

Fisher, K. H.; Fletcher, A. G.; Strutt, D. I.

10.1101/236836 — systems biology — Posted on 2018-10-25

658 DIA-NN: Neural networks and interference correction enable deep coverage in high-throughput proteomics

Demichev, V.; Messner, C. B.; Vernardis, S. I.; Lilley, K. S.; Ralser, M.

10.1101/282699 — bioinformatics — Posted on 2018-10-25

659 Precise excitation-inhibition balance controls gain and timing in hippocampus

Bhatia, A.; Moza, S.; Bhalla, U. S.

10.1101/190298 — neuroscience — Posted on 2018-10-25

660 Characterisation of deubiquitylating enzymes in the cellular response to high-LET ionising radiation and complex DNA damage

Carter, R.; Nickson, C.; Thompson, J.; Kacperek, A.; Hill, M.; Parsons, J. L.

10.1101/453118 — cancer biology — Posted on 2018-10-25

661 Directed evolution of split APEX peroxidase

Han, Y.; Martell, J.; Branon, T.; Boassa, D.; Shechner, D.; Ellisman, M.; Ting, A.

10.1101/452888 — bioengineering — Posted on 2018-10-25

662 Transcriptome profiling of pathogen-specific CD4 T cells identifies T-cell-intrinsic caspase-1 as an important regulator of Th17 differentiation

Gao, Y.; Deason, K.; Jain, A.; Irizarry-Caro, R. A.; Dozmorov, I.; Rauch, I.; Wakeland, E. K.; Pasare, C.

10.1101/452763 — immunology — Posted on 2018-10-25

663 cTAGE5 acts as a Sar1 GTPase regulator for collagen export

Sasaki, N.; Shiraiwa, M.; Maeda, M.; Yorimitsu, T.; Sato, K.; Katada, T.; Saito, K.

10.1101/452904 — cell biology — Posted on 2018-10-25

664 ILEX PARAGUARIENSIS, EXERCISE AND CARDIOPROTECTION: A retrospective analysis

Cahue, F.; Barcellos, L.; Nascimento, J. H. M.; Salerno, V. P.

10.1101/452946 — biochemistry — Posted on 2018-10-25

665 Multiple decay events target HAC1 mRNA during splicing to regulate the unfolded protein response

Cherry, P. D.; Peach, S. E.; Hesselberth, J. R.

10.1101/452516 — molecular biology — Posted on 2018-10-25

666 Asymmetric redundancy of ZERZAUST and ZERZAUST HOMOLOG in different accessions of Arabidopsis thaliana

Vaddepalli, P.; Fulton, L.; Schneitz, K.

10.1101/452615 — genetics — Posted on 2018-10-25

667 SPR-measured kinetics of PROTAC ternary complexes influence target degradation rate

Roy, M. J.; Winkler, S.; Hughes, S. J.; Whitworth, C.; Galant, M.; Farnaby, W.; Rumpel, K.; Ciulli, A.

10.1101/451948 — biochemistry — Posted on 2018-10-25

668 Increasing the Capping Efficiency of the Sindbis Virus nsP1 Protein Negatively Affects Viral Infection

LaPointe, A. T.; Moreno-Contreras, J.; Sokoloski, K. J.

10.1101/453068 — microbiology — Posted on 2018-10-25

669 Interplay between substrate recognition, 5’ end tRNA processing and methylation activity of human mitochondrial RNase P

Karasik, A.; Fierke, C.; Koutmos, M.

10.1101/452920 — biochemistry — Posted on 2018-10-25

670 Maternal and zygotic gene regulatory effects of endogenous RNAi pathways

Almeida, M. V.; de Jesus Domingues, A. M.; Ketting, R. F.

10.1101/453266 — molecular biology — Posted on 2018-10-25

671 Modeling Edar expression reveals the hidden dynamics of tooth signaling center patterning

Sadier, A.; Twarogowska, M.; Steklikova, K.; Hayden, L.; Lambert, A.; Schneider, P.; Laudet, V.; Hovorakova, M.; Calvez, V.; Pantalacci, S.

10.1101/453258 — developmental biology — Posted on 2018-10-25

672 Hypothalamic transcriptome analysis reveals the neuroendocrine mechanisms in controlling broodiness of Muscovy duck (Cairina moschata)

Ye, P.; Li, M.; Liao, W.; Ge, K.; Jin, S.; Zhang, C.; Chen, X.; Geng, Z.; Pengfei Ye, Min Li, Wang Liao, Kai Ge, Sihua Jin, Cheng Zhang, Xingyong Chen?Zhaoyu Geng,

10.1101/453241 — animal behavior and cognition — Posted on 2018-10-25

673 Ethnobotanical and nutritional study of quelites sold in two traditional markets of Oaxaca, Mexico

Manzanero Medina, G. I.; Herrera, A.; Lustre-Sanchez, H.; Vasquez-Davila, M. A.; Santos-Sanchez, N. F.; Sanchez-Medina, M. A.

10.1101/453225 — plant biology — Posted on 2018-10-25

674 Universal antibiotic tolerance arising from antibiotic-triggered accumulation of redox metabolites

Zhu, K.; Chen, S.; Sysoeva, T.; YOU, L.

10.1101/453290 — microbiology — Posted on 2018-10-25

675 Interplay of protein disorder in retinoic acid receptor heterodimer and its corepressor regulates gene expression

Cordeiro, T. N.; Sibille, N.; Germain, P.; Barthe, P.; Boulahtouf, A.; Allemand, F.; Bailly, R.; Vivat, V.; Ebel, C.; Barducci, A.; Bourguet, W.; le Maire, A.; Bernado, P.

10.1101/452482 — biophysics — Posted on 2018-10-25

676 Measuring mobility in chromatin by intensity sorted FCS

Di Bona, M.; Mancini, M.; Mazza, D.; Vicidominii, G.; Diaspro, A.; Lanzano, L.

10.1101/452540 — biophysics — Posted on 2018-10-25

677 Fair allocation of healthcare research funds by the European Union?

Kalo, Z.; van den Akker, L. H. M.; Voko, Z.; Csanadi, M.; Pitter, J. G.

10.1101/453209 — scientific communication and education — Posted on 2018-10-25

678 Mortality in trauma patients admitted during, before, and after national academic emergency medicine and trauma surgery meeting dates in Japan

Yumoto, T.; Naito, H.; Ihoriya, H.; Yorifuji, T.; Nakao, A.

10.1101/453233 — epidemiology — Posted on 2018-10-25

679 Strongyloides stercoralis: spatial distribution of a highly prevalent and ubiquitous soil-transmitted helminth in Cambodia

Forrer, A.; Khieu, V.; Vounatsou, P. V.; Sithithaworn, P. S.; Ruantip, S. R.; Huy, R. H.; Muth, S.; Odermatt, P.

10.1101/453274 — epidemiology — Posted on 2018-10-25

680 Chronosequence and direct observation approaches reveal complementary community dynamics in a novel ecosystem

Kulmatiski, A.; Beard, K. H.

10.1101/453217 — ecology — Posted on 2018-10-25

681 Ddx3x regulates B-cell development and light chain recombination in mice

Liu, K.; Tuazon, J.; Karmele, E.; Krishnamurthy, D.; Perlot, T.; Foong-Sobis, M.; Karns, R.; Mandal, M.; Reynaud, D.; Scofield, R. H.; Penninger, J.; Harley, J.; Waggoner, S.

10.1101/452086 — immunology — Posted on 2018-10-25

682 Inference of the worldwide invasion routes of the pinewood nematode, Bursaphelenchus xylophilus, using ABC analysis on microsatellite data

Mallez, S.; Castagnone, C.; Castagnone-Sereno, P.; Lombaert, E.; Guillemaud, T.

10.1101/452326 — genetics — Posted on 2018-10-25

683 Reporting of \"dialysis adequacy\" as an outcome in randomised trials conducted in adults on haemodialysis: a systematic review

Van Biesen, W.; Steyaert, S.; Holvoet, E.; Nagler, E.; Malfait, S.

10.1101/453191 — epidemiology — Posted on 2018-10-25

684 Anti-tumor effects of antimicrobial peptides, targets of the innate immune system, against hematopoietic tumors in Drosophila mxc mutants

Araki, M.; Awane, R.; Sato, T.; Ohkawa, Y.; Inoue, Y.

10.1101/452961 — developmental biology — Posted on 2018-10-25

685 Split Selectable Markers

Jillette, N.; Du, M.; Cheng, A. W.

10.1101/452979 — bioengineering — Posted on 2018-10-25

686 Effects of inflammation-induced oxidation on the dimerization of fibrinogen αC domain

Pederson, E. N.; Interlandi, G.

10.1101/452912 — biochemistry — Posted on 2018-10-25

687 Transient Replication in Specialized Cells Favors Conjugative Transfer of a Selfish DNA Element

Delavat, F.; Moritz, R.; van der Meer, J. R.

10.1101/451864 — microbiology — Posted on 2018-10-25

688 A comparison of antigen-specific T cell responses induced by six novel tuberculosis vaccine candidates

Rodo, M. J.; Rozot, V.; Nemes, E.; Dintwe, O.; Hatherill, M.; Little, F.; Scriba, T.

10.1101/452060 — immunology — Posted on 2018-10-25

689 Relation between executive functions and polymorphisms in COMT, MAO-A, HTTLPR, SLC1A1 and HT2A in a sample of children with Obsessive Compulsive Disorder

Avila-Campos, J. E.; Pinto Dussan, M.; Polanco Barreto, A.; Guerrero, E.; Vasquez Rojas, R.; Arboleda Granados, H.

10.1101/452193 — neuroscience — Posted on 2018-10-25

690 Insertion sequences drive the emergence of a highly adapted human pathogen

Sentausa, E.; Basso, P.; Berry, A.; Adrait, A.; Bellement, G.; Coute, Y.; Lory, S.; Elsen, S.; Attree, I.

10.1101/452334 — microbiology — Posted on 2018-10-25

691 Fitness benefits of loss of heterozygosity in Saccharomyces hybrids

Lancaster, S. M.; Payen, C.; Smukowski Heil, C.; Dunham, M. J.

10.1101/452748 — genetics — Posted on 2018-10-25

692 Actomyosin-driven force patterning controls endocytosis at the immune synapse

Kumari, A.; Saez, P. J.; Maurin, M.; Lankar, D.; San Roman, M.; Voituriez, R.; Hennig, K.; Boura, V. F.; Karlsson, M.; Balland, M.; Lennon-Dumenil, A.-M.; Pierobon, P.

10.1101/452896 — cell biology — Posted on 2018-10-25

693 Testing the Gene Expression Classification of the EMT Spectrum

Jia, D.; George, J. T.; Tripathi, S. C.; Kundnani, D. L.; Lu, M.; Hanash, S. M.; Onuchic, J. N.; Jolly, M. K.; Levine, H.

10.1101/452508 — systems biology — Posted on 2018-10-25

694 Loss of SATB1 Induces a p21 Dependent CellularSenescence Phenotype in Dopaminergic Neurons

Riessland, M.; Kolisnyk, B.; Kim, T. W.; Cheng, J.; Ni, J.; Pearson, J. A.; Park, E. J.; Dam, K.; Acehan, D.; Ramos-Espiritu, L. S.; Wang, W.; Zhang, J.; Shim, J.-w.; Ciceri, G.; Brichta, L.; Studer, L.; Greengard, P.

10.1101/452243 — neuroscience — Posted on 2018-10-25

695 PAR protein activation-deactivation cycles stabilize long-axis polarization in C. elegans

Gessele, R.; Halatek, J.; Frey, E.

10.1101/451880 — biophysics — Posted on 2018-10-25

696 Feeding behavior of Costa Rican velvet worms: food hiding, parental feeding investment and ontogenetic diet shift (Onychophora: Peripatidae)

Barquero-Gonzalez, J. P.; Vega-Hidalgo, A.; Monge-Najera, J.

10.1101/452706 — animal behavior and cognition — Posted on 2018-10-25

697 Glycerol phosphate acyltransferase 6 controls filamentous pathogen interactions and cell wall properties of the tomato and Nicotiana benthamiana leaf epidermis

Fawke, S.; Torode, T. A.; Gogleva, A.; Fich, E. A.; Sorensen, I.; Yunusov, T.; Rose, J. K.; Schornack, S.

10.1101/452102 — plant biology — Posted on 2018-10-24

698 State-dependent changes in olfactory cortical networks via cholinergic modulation

Wilson, D. A.; Juventin, M.; Ilina, M.; Pizzo, A.; Teixeira, C.

10.1101/452003 — neuroscience — Posted on 2018-10-24

699 Genomic prediction offers the most effective marker assisted breeding approach for ability to prevent arsenic accumulation in rice grains

Frouin, J.; Labeyrie, A.; Boissard, A.; Sacchi, G. A.; Ahmadi, N.

10.1101/452276 — genetics — Posted on 2018-10-24

700 Genetic transformation of the dinoflagellate chloroplast

Nimmo, I.; Barbrook, A. C.; Chen, J. E.; Geisler, K.; Smith, A. G.; Aranda, M.; Purton, S.; Waller, R. F.; Nisbet, R. E. R.; Howe, C. J.

10.1101/452144 — genetics — Posted on 2018-10-24

701 Inference of recombination maps from a single pair of genomes and its application to archaic samples

Valadares Barroso, G.; Puzovic, N.; Dutheil, J.

10.1101/452268 — evolutionary biology — Posted on 2018-10-24

702 A survey of fishes of Hombolo Lake, Dodoma, Tanzania, with evidence for local extinction of a native tilapia as a consequence of stocking

Turner, G. F.; Ngatunga, B. P.; Genner, M. J.

10.1101/452847 — ecology — Posted on 2018-10-24

703 Automated optimal parameters for T-distributed stochastic neighbor embedding improve visualization and allow analysis of large datasets

Belkina, A. C.; Ciccolella, C. O.; Anno, R.; Spidlen, J.; Halpert, R.; Snyder-Cappione, J.

10.1101/451690 — bioinformatics — Posted on 2018-10-24

704 Logistic Regression Analysis of Multiple Interosseous Hand-Muscle Activities using Surface Electromyography during Finger-Oriented Tasks

Yokoyama, M.; Yanagisawa, M.

10.1101/278051 — bioengineering — Posted on 2018-10-24

705 Divalent cations can control a switch-like behavior in heterotypic and homotypic RNA coacervates

Onuchic, P. L.; Milin, A. N.; Alshareedah, I.; Deniz, A. A.; Banerjee, P. R.

10.1101/453019 — biochemistry — Posted on 2018-10-24

706 IN VITRO AND IN VIVO CHARACTERISATION OF ISOLATES OF CRYPTOCOCCUS NEOFORMANS CAUSING MENINGITIS IN HIV INFECTED AND UNINFECTED PATIENTS IN VIETNAM

Lam, T. T.; Toffaletti, D.; Tenor, J.; Giamberardino, C.; Sempowski, G.; Asfaw, Y.; Phan, T. H.; Duong, A. V.; Nguyen, T. M.; Nguyen, L. P. H.; Tran, C. T. H.; Ashton, P. M.; Beardsley, J.; Nguyen, C. V. V.; Thwaites, G. E.; Baker, S.; Perfect, J. R.; Day, J. N.

10.1101/189274 — microbiology — Posted on 2018-10-24

707 Funmap2: an R package for QTL mapping using longitudinal phenotypes

Wang, N.; Chu, T.; Luo, J.; Wu, R.; Wang, Z.

10.1101/231928 — genetics — Posted on 2018-10-24

708 The Heterotaxy Gene, CCDC11, is Essential for Cytokinesis and Cell-Cell Adhesion Via RhoA Regulation

Kulkarni, S. S.; Stephenson, R.; Amalraj, S.; Betleja, E.; Moresco, J. J.; Yates, J. R.; Mahjoub, M. R.; Miller, A.; Khokha, M.

10.1101/452631 — cell biology — Posted on 2018-10-24

709 Bipolar spindle formation is a fast, irreversible process requiring Kinesin-5 crosslinking and sliding modalities

Leary, A.; Nazarova, E.; Sim, S.; Shulist, K.; Francois, P.; Vogel, J.

10.1101/452821 — biophysics — Posted on 2018-10-24

710 Different Munc18 Proteins Mediate Baseline and Stimulated Airway Mucin Secretion

Jaramillo, A. M.; Piccotti, L.; Velasco, W. V.; Huerta Delgado, A. S.; Azzegagh, Z.; Chung, F.; Nazeer, U.; Farooq, J.; Brenner, J.; Parker-Thornburg, J.; Scott, B. L.; Evans, C. M.; Adachi, R.; Burns, A. R.; Kreda, S. M.; Tuvim, M. J.; Dickey, B. F.

10.1101/451914 — cell biology — Posted on 2018-10-24

711 LC3 and STRAP regulate actin filament assembly by JMY during autophagosome formation

Hu, X.; Mullins, R. D.

10.1101/451393 — cell biology — Posted on 2018-10-24

712 Potentiating α2 subunit containing perisomatic GABAA receptors protects against seizures in a mouse model of Dravet Syndrome

Nomura, T.; Hawkins, N. A.; Kearney, J. A.; George, A. L.; Contractor, A.

10.1101/452813 — neuroscience — Posted on 2018-10-24

713 A Haploid Genetic Screening Method for Proteins Influencing Mammalian Nonsense-Mediated mRNA Decay Activity

Popp, M.; Maquat, L.

10.1101/452490 — molecular biology — Posted on 2018-10-24

714 Bacterial Hsp90 mediates the degradation of aggregation-prone Hsp70-Hsp40 substrates preferentially by HslUV proteolysis

Fauvet, B.; Finka, A.; Castanie-Cornet, M.-P.; Cirinesi, A.-M.; Genevaux, P.; Quadroni, M.; Goloubinoff, P.

10.1101/451989 — molecular biology — Posted on 2018-10-24

715 Dynamic Hh signaling can generate temporal information during tissue patterning

Garcia-Morales, D.; Navarro, T.; Iannini, A.; Miguez, D. G.; Casares, F.

10.1101/451872 — developmental biology — Posted on 2018-10-24

716 Transitions in cell potency during early mouse development are driven by Notch

Menchero, S.; Lopez-Izquierdo, A.; Rollan, I.; Sainz de Aja, J.; Andreu, M. J.; Kang, M.; Adan, J.; Benedito, R.; Rayon, T.; Hadjantonakis, A.-K.; Manzanares, M.

10.1101/451922 — developmental biology — Posted on 2018-10-24

717 tbx5 and tbx15 mediate zebrafish posterior lateral line migration and development via a negative feedback loop

Whitehurst, H. R.; Gallardo, V. E.; Burgess, S. M.

10.1101/452797 — developmental biology — Posted on 2018-10-24

718 Structural Organization of a Type III-A CRISPR Effector Subcomplex Determined by X-ray Crystallography and Cryo-EM

Dorsey, B. W.; Huang, L.; Mondragon, A.

10.1101/452599 — biophysics — Posted on 2018-10-24

719 Genome-wide gene expression profiling reveals that cuticle alterations and P450 detoxification are associated with pyrethroid resistance in Anopheles arabiensis populations from Ethiopia

Simma, E. A.; Dermauw, W.; Balabanidou, V.; Snoeck, S.; Bryon, A.; Clark, R. M.; Yewhalaw, D.; Vontas, J.; Duchateau, L.; Van Leeuwen, T.

10.1101/451336 — molecular biology — Posted on 2018-10-24

720 Targeting endogenous retrovirus gene transcription in human cancers

Lin, A. T.; Santander, C. G.; Marchi, E.; Karamitros, T.; Katzourakis, A.; Magiorkinis, G.

10.1101/449686 — bioinformatics — Posted on 2018-10-24

721 Insights on the assembly rules of a continent-wide multilayer network

Mello, M. A. R.; Felix, G. M.; Pinheiro, R. B. P.; Muylaert, R. L.; Geiselman, C.; Santana, S.; Tschapka, M.; Lotfi, N.; Rodrigues, F.; Stevens, R. D.

10.1101/452565 — ecology — Posted on 2018-10-24

722 Open-Source Food: Nutrition, Toxicology, and Availability of Wild Edible Greens in the East Bay

Stark, P. B.; Miller, D.; Carlson, T.; de Vasquez, K. R.

10.1101/385864 — ecology — Posted on 2018-10-24

723 Ring shape Golden Ratio multicellular structures are algebraically afforded by asymmetric mitosis and one to one cell adhesion

Butler, W.; Kinane, T. B.

10.1101/450528 — systems biology — Posted on 2018-10-24

724 Microglial SIRPα regulates the emergence of CD11c+ microglia and demyelination damage in white matter

Sato-Hashimoto, M.; Nozu, T.; Toriba, R.; Horikoshi, A.; Akaike, M.; Kawamoto, K.; Hirose, A.; Hayashi, Y.; Nagai, H.; Shimizu, W.; Saiki, A.; Ishikawa, T.; Elhanbaly, R.; Kotani, T.; Murata, Y.; Saito, Y.; Naruse, M.; Shibasaki, K.; Oldenborg, P.-A.; Jung, S.; Matozaki, T.; Fukazawa, Y.; Ohnishi, H.

10.1101/443531 — neuroscience — Posted on 2018-10-24

725 Use of Next Generation Sequencing to study two Cowpoxvirus outbreaks

Antwerpen, M.; Georgi, E.; Nikolic, A.; Zoeller, G.; Wohlsein, P.; Baumgaertner, W.; Peyrefitte, C.; Charell, R.; Meyer, H.

10.1101/444141 — genomics — Posted on 2018-10-24

726 Gut microbiota and phytoestrogen-associated infertility in southern white rhinoceros

Williams, C. L.; Ybarra, A. R.; Meredith, A. N.; Durrant, B. S.; Tubbs, C. W.

10.1101/451757 — microbiology — Posted on 2018-10-24

727 Nuclear export in somatic cyst cells controls cyst cell-germline coordination and germline differentiation in the Drosophila testis

Papagiannouli, F.; Fuller, M. T.; Lohmann, I.

10.1101/452466 — developmental biology — Posted on 2018-10-24

728 Connecting the Microenvironmental Niche to Treatment Response in Ovarian Cancer

Strobl, M.; Wicker, M.; Adhikarla, V.; Shockey, A.; Lakatos, E.; Pooladvand, P.; Schenck, R.; Saputro, L.; Gatenby, C.; Koppens, M.; Cruz Garcia, S.; Wenham, R.; Damaghi, M.; Gallaher, J. A.

10.1101/452052 — cancer biology — Posted on 2018-10-24

729 SNAPS: A toolkit for studying cell surface shedding of diverse transmembrane receptors

Hayward, A. N.; Aird, E. J.; Gordon, W. R.

10.1101/436592 — systems biology — Posted on 2018-10-24

730 Integrated in vivo quantitative proteomics and nutrient tracing reveals age-related metabolic rewiring of pancreatic β-cell function

Wortham, M.; Benthuysen, J. R.; Wallace, M.; Savas, J. N.; Mulas, F.; Divakaruni, A. S.; Liu, F.; Albert, V.; Taylor, B. L.; Sui, Y.; Saez, E.; Murphy, A. N.; Yates, J. R.; Metallo, C. M.; Sander, M.

10.1101/451542 — physiology — Posted on 2018-10-24

731 A two-step probing method to compare lysine accessibility across macromolecular complex conformations

MacRae, A. J.; Coltri, P.; Hrabeta-Robinson, E.; Chalkley, R.; Burlingame, A.; Jurica, M. S.

10.1101/448605 — molecular biology — Posted on 2018-10-24

732 Realistic in silico generation and augmentation of single cell RNA-seq data using Generative Adversarial Neural Networks

Marouf, M.; Machart, P.; Magruder, D. S. S.; Bansal, V.; Kilian, C.; Krebs, C. F.; Bonn, S.

10.1101/390153 — bioinformatics — Posted on 2018-10-24

733 A Reproducible Triple-Network Neurobiology of Depressive Rumination

Pisner, D.; Shumake, J.; Beevers, C.; Schnyer, D.

10.1101/365759 — neuroscience — Posted on 2018-10-24

734 Dorsal Hippocampus not always necessary in a Radial Arm Maze Delayed Win-shift Task

Layfield, D.; Sidell, N.; Abdullahi, A.; Newman, E. L.

10.1101/433565 — neuroscience — Posted on 2018-10-24

735 Comparison of ecological, biological and anthropogenic causes of vehicle-wildlife collisions among three large herbivore species

Saint-Andrieux, C.; Calenge, C.; Bonenfant, C.

10.1101/385161 — ecology — Posted on 2018-10-24

736 Effect of fire and thinning on fine-scale genetic structure and gene flow in fire-suppressed populations of sugar pine (Pinus lambertiana Douglas)

Lind, B. M.; North, M. P.; Maloney, P. E.; Eckert, A. J.

10.1101/448522 — ecology — Posted on 2018-10-24

737 Available energy fluxes drive a transition in the diversity, stability, and functional structure of microbial communities

Marsland, R.; Cui, W.; Goldford, J. E.; Sanchez, A.; Korolev, K.; Mehta, P.

10.1101/335893 — biophysics — Posted on 2018-10-24

738 Cycling with blood flow restriction improves performance and muscle K+ regulation and blunts the effect of antioxidant infusion in humans

Christiansen, D.; Eibye, K. H.; Rasmussen, V.; Voldbye, H. M.; Thomassen, M.; Nyberg, M.; Gunnarsson, T. G. P.; Skovgaard, C.; Lindskrog, M. S.; Bishop, D. J.; Hostrup, M.; Bangsbo, J.

10.1101/375881 — physiology — Posted on 2018-10-24

739 Motor nuclei innervating eye muscles spared in mouse model of SOD1-linked ALS

Thomas, E. V.; Nagy, M.; Zhao, H.-y.; Fenton, W. A.; Horwich, A. L.

10.1101/304857 — neuroscience — Posted on 2018-10-24

740 Genotypic and phenotypic diversity within the neonatal HSV-2 population

Akhtar, L. N.; Bowen, C. D.; Renner, D. W.; Pandey, U.; Della Fera, A. N.; Kimberlin, D. W.; Prichard, M. N.; Whitley, R. J.; Weitzman, M. D.; Szpara, M. L.

10.1101/262055 — microbiology — Posted on 2018-10-24

741 Bundle sheath extensions affect leaf phenotypic plasticity in response to irradiance

Barbosa, M. A. M.; Chitwood, D. H.; Azevedo, A. A.; Araujo, W. L.; Ribeiro, D. M.; Peres, L. E. P.; Martins, S. V. C.; Zsögön, A.

10.1101/208850 — plant biology — Posted on 2018-10-24

742 A Mathematical Model Relating Pitocin Use During Labor with Offspring Autism Development in Terms of Oxytocin Receptor Desensitization in the Fetal Brain

Gottlieb, M. M.

10.1101/446997 — neuroscience — Posted on 2018-10-24

743 Tunable Transcriptional Interference at the Endogenous Alcohol Dehydrogenase Gene Locus in Drosophila melanogaster

Jorgensen, V.; Chen, J.; Vander Wende, H.; Harris, D.; Wong-Deyrup, S. W.; Chen, Y.; Rangan, P.; Brar, G. A.; Sawyer, E. M.; Chan, L. Y.; Ünal, E.

10.1101/452649 — genetics — Posted on 2018-10-24

744 Nuclear export in somatic cyst cells controls cyst cell-germline coordination and germline differentiation in the Drosophila testis

Papagiannouli, F.; Fuller, M. T.; Lohmann, I.

10.1101/452466 — developmental biology — Posted on 2018-10-24

745 Developmental synaptic changes at the transient olivocochlear-inner hair cell synapse

Kearney, G.; Zorrilla de San Martin, J.; Vattino, L. G.; Elgoyhen, A. B.; Wedemeyer, C.; Katz, E.

10.1101/452524 — neuroscience — Posted on 2018-10-24

746 Capturing the dynamics of genome replication on individual ultra-long nanopore sequence reads

Mueller, C. A.; Boemo, M. A.; Spingardi, P.; Kessler, B.; Kriaucionis, S.; Simpson, J. T.; Nieduszynski, C. A.

10.1101/442814 — genomics — Posted on 2018-10-24

Oliveira, F. A. d.; Vigna, B. B. Z.; Silva, C. C. d.; Favero, A. P.; Matta, F. d. P.; Azevedo, A. L. S.; Souza, A. P. d.

10.1101/369280 — plant biology — Posted on 2018-10-24

748 Effect of ring topology in a stochastic model for Z-ring dynamics in bacteria

Sumedha, S.; Kumar, A. V. A.; Swain, A.

10.1101/452441 — biophysics — Posted on 2018-10-24

749 Resolving the origins of membrane phospholipid biosynthesis genes using outgroup-free rooting

Coleman, G. A.; Pancost, R. D.; Williams, T. A.

10.1101/312991 — evolutionary biology — Posted on 2018-10-24

750 GeneWeld: a method for efficient targeted integration directed by short homology

Wierson, W. A.; Welker, J. M.; Almeida, M. P.; Mann, C. M.; Webster, D. A.; Weiss, T. J.; Torrie, M. E.; Vollbrecht, M. K.; Lan, M.; McKeighan, K. C.; Ming, Z.; Wehmeier, A.; Mikelson, C. S.; Haltom, J. A.; Kwan, K. M.; Chien, C.-B.; Balciunas, D.; Ekker, S. C.; Clark, K. J.; Webber, B. R.; Moriarity, B.; Solin, S. L.; Carlson, D. F.; Dobbs, D. L.; McGrail, M.; Essner, J. J.

10.1101/431627 — genetics — Posted on 2018-10-24

751 Enhanced in vivo-imaging in fish by optimized anaesthesia, fluorescent protein selection and removal of pigmentation

Lischik, C. Q.; Adelmann, L.; Wittbrodt, J.

10.1101/428763 — developmental biology — Posted on 2018-10-24

752 CopySwitch - in vivo optimization of gene copy numbers for heterologous gene expression in Bacillus subtilis

Nadler, F.; Bracharz, F.; Kabisch, J.

10.1101/446393 — bioengineering — Posted on 2018-10-24

753 Lexical Access in Comprehension vs. Production: Spatiotemporal Localization of Semantic Facilitation and Interference

Dirani, J.; Pylkkanen, L.

10.1101/449157 — neuroscience — Posted on 2018-10-24

754 Computational Geometry for Modeling Neural Populations: from Visualization to Simulation

de Kamps, M.; Elle Lepperod, M.; Lai, Y. M.

10.1101/275412 — neuroscience — Posted on 2018-10-24

755 Fine-grained habitat-associated genetic connectivity in an admixed population of mussels in the small isolated Kerguelen Islands

Fraisse, C.; Haguenauer, A.; Gerard, K.; Weber, A. A.-T.; Bierne, N.; Chenuil, A.

10.1101/239244 — evolutionary biology — Posted on 2018-10-24

756 Asymmetrical localization of Nup107-160 subcomplex components within the nuclear pore complex in fission yeast

Asakawa, H.; Kojidani, T.; Yang, H.-J.; Ohtsuki, C.; Osakada, H.; Matsuda, A.; Iwamoto, M.; Chikashige, Y.; Takagi, N.; Nagao, K.; Obuse, C.; Hiraoka, Y.; Haraguchi, T.

10.1101/223131 — cell biology — Posted on 2018-10-24

757 Characterisation of a type II functionally-deficient variant of alpha-1-antitrypsin discovered in the general population

Laffranchi, M.; Elliston, E. L. K.; Gangemi, F.; Berardelli, R.; Lomas, D. A.; Irving, J. A.; Fra, A.

10.1101/452375 — biochemistry — Posted on 2018-10-24

758 Rapid clearing of biological organs by using phosphoric acid, a hydrophilic solution with high refractive index

Umezawa, M.; Haruguchi, S.; Fukushima, R.; Sekiyama, S.; Kamimura, M.; Soga, K.

10.1101/452425 — cancer biology — Posted on 2018-10-24

759 A multiscale model of epigenetic heterogeneity reveals the kinetic routes of pathological cell fate reprogramming

Folguera-Blasco, N.; Perez-Carrasco, R.; Cuyas, E.; Menendez, J. A.; Alarcon, T.

10.1101/452433 — systems biology — Posted on 2018-10-24

760 Silencing cathepsin L expression reduces Myzus persicae protein content and the nutritional value as prey for Coccinella septempunctata

Rauf, I.; Asif, M.; Amin, I.; Naqvi, R. Z.; Umer, N.; Mansoor, S.; Jander, G.

10.1101/451211 — molecular biology — Posted on 2018-10-24

761 Differential gene expression, including Sjfs800, in Schistosoma japonicum females before, during, and after male-female pairing

Liu, F.; Ding, H.; Tian, J.; Zhou, C.; Yang, F.; Shao, W.; Du, Y.; Hou, X.; Ren, C.; Shen, J.; Liu, M.; Fengchun Liu , Han Ding, Jiaming Tian, Chongyu Zhou, Fei Yang, Wei Shao, Yinan Du, Xin Hou, Cuiping,

10.1101/452458 — genomics — Posted on 2018-10-24

762 Building Key Populations HIV Treatment Cascades in Data-Scarce Environments: Towards a participatory stakeholder methodology for cascades construction, adoption, and utilization

Lane, T.; Grasso, M.; Scheibe, A.; Liu, G.; Marr, A.; Murangandi, P.; Aynalem, G.; Slabbert, M.; Malaka, L.; Isdahl, Z.; Osmand, T.; Nadol, P.

10.1101/452417 — epidemiology — Posted on 2018-10-24

763 The impact of human activities on Australian wildlife

Taylor-Brown, A.; Booth, R.; Gillett, A.; Meally, E.; Ogbourne, S.; Polkinghorne, A.; Conroy, G.

10.1101/452409 — ecology — Posted on 2018-10-24

764 KCF-Convoy: efficient Python package to convert KEGG Chemical Function and Substructure fingerprints

Sato, M.; Suetake, H.; Kotera, M.

10.1101/452383 — bioinformatics — Posted on 2018-10-24

765 Dysregulation of circular RNAs in myotonic dystrophy type 1

Voellenkle, C.; Perfetti, A.; Carrara, M.; Fuschi, P.; Renna, L. V.; Longo, M.; Cardani, R.; Valaperta, R.; Silvestri, G.; Legnini, I.; Bozzoni, I.; Furling, D.; Gaetano, C.; Falcone, G.; Meola, G.; Martelli, F.

10.1101/452391 — molecular biology — Posted on 2018-10-24

766 A Novel analog approach for fast evaluation of affinity between ligand and receptor in scaled up molecular models

Tavousi, P.; Shahbazmohamadi, S.

10.1101/452367 — biochemistry — Posted on 2018-10-24

767 Learning of distant state predictions by the orbitofrontal cortex in humans

Wimmer, G. E.; Buechel, C.

10.1101/450999 — neuroscience — Posted on 2018-10-24

768 Motor primitives in space and time via targeted gain modulation in cortical networks

Stroud, J. P.; Hennequin, G.; Porter, M. A.; Vogels, T. P.

10.1101/451054 — neuroscience — Posted on 2018-10-24

769 Sendai Virus Infection Induces Expression of Novel RNAs in Human Cells

Mandhana, R.; Horvath, C. M.

10.1101/451369 — immunology — Posted on 2018-10-24

770 Permutation methods for assessing significance in binary trait association mapping with structured samples

Mbatchou, J.; Abney, M.; McPeek, M. S.

10.1101/451377 — genetics — Posted on 2018-10-24

771 Genetic characterization of chytrids isolated from larval amphibians collected in central and east Texas

Marshall, T. L.; Baca, C. R.; Correa, D. T.; Forstner, M. R.; Hahn, D.; Rodriguez, D.

10.1101/451385 — evolutionary biology — Posted on 2018-10-24

772 Prediction of Algal Blooms in the Great Lakes through a Convolution Neural Network of Remote Sensing Data

Srinivasan, K.; Hess, D.; Duvvur, V.

10.1101/450551 — ecology — Posted on 2018-10-24

773 The impact of data reduction and lossy image formats on electron microscope images

Eng, E. T.; Kopylov, M.; Negro, C. J.; Dallaykan, S.; Rice, W. J.; Jordan, K. D.; Kelley, K.; Carragher, B.; Potter, C.

10.1101/451427 — biophysics — Posted on 2018-10-24

774 MeShClust2: Application of alignment-free identity scores in clustering long DNA sequences

James, B.; Girgis, H. Z.

10.1101/451278 — bioinformatics — Posted on 2018-10-24

775 A physiology-based model of bile acid metabolism shows altered tissue concentrations after drug administration and in specific genotype subgroups

Baier, V.; Cordes, H.; Thiel, C.; Neumann, U. P.; Blank, L. M.; Kuepfer, L.

10.1101/450965 — systems biology — Posted on 2018-10-24

776 Sudden heart rate reduction upon optogenetic release of acetylcholine from cardiac parasympathetic neurons in perfused hearts

Moreno, A.; Endicott, K.; Skancke, M.; Dwyer, M. K.; Brennan, J.; Efimov, I.; Trachiotis, G.; Mendelowitz, D.; Kay, M.

10.1101/451450 — physiology — Posted on 2018-10-24

777 CFP-1 interacts with HDAC1/2 complexes in C. elegans development

Pokhrel, B.; Chen, Y.; Biro, J. J.

10.1101/451237 — genomics — Posted on 2018-10-24

778 Massive gene amplification on a recently formed Drosophila Y chromosome

Bachtrog, D.; Mahajan, S.

10.1101/451005 — evolutionary biology — Posted on 2018-10-24

779 Variation in tolerance to parasites in natural Asian tiger mosquito populations and its effect on vectorial capacity

Dharmarajan, G.; Lehmann, T.; Walker, K. D.

10.1101/445759 — ecology — Posted on 2018-10-24

780 Ask1 and Akt act synergistically to promote ROS-dependent regeneration in Drosophila

Santabarbara Ruiz, P.; Estaban Collado, J.; Perez, L.; Viola, G.; Milan, M.; Corominas, M.; Serras, F.

10.1101/451070 — developmental biology — Posted on 2018-10-24

781 Somatic Evolution Introduces Distinctive Changes in Proteome Composition in Cancer Types

Tsuber, V.

10.1101/451310 — cancer biology — Posted on 2018-10-24

782 Integration of heterogeneous functional genomics data in gerontology research identifies genes and pathway underlying aging across species

Bubier, J. A.; Sutphin, G. L.; Reynolds, T. J.; Korstanje, R.; Fuksman-Kumpa, A.; Baker, E. J.; Langston, M. A.; Chesler, E. J.

10.1101/451013 — bioinformatics — Posted on 2018-10-24

783 The dynamic and structural properties of axonemal tubulins support the high length stability of cilia

Orbach, R.; Howard, J.

10.1101/451351 — biochemistry — Posted on 2018-10-24

784 Bioinspired Design of Lysolytic Triterpenoid-Peptide Conjugates that Kill African Trypanosomes

Leeder, W.- M.; Giehler, F.; Joswig, J.; Göringer, H. U.

10.1101/451252 — synthetic biology — Posted on 2018-10-24

785 Fragmentation of pooled PCR products for highly multiplexed TILLING

Tramontano, A.; Jarc, L.; Jankowicz-Cieslak, J.; Hofinger, B. J.; Gajek, K.; Szurman-Zubrzycka, M.; Szarejko, I.; Inglebrecht, I.; Till, B. J.

10.1101/451567 — plant biology — Posted on 2018-10-24

786 Simultaneous task-based BOLD-fMRI and FDG functional PET for measurement of neuronal metabolism in the human visual cortex

Jamadar, S. D.; Ward, P. G. D.; Li, S.; Sforazzini, F.; Baran, J.; Chen, Z.; Egan, G. F.

10.1101/451468 — neuroscience — Posted on 2018-10-24

787 Mathematical Modeling Identifies the Role of Adaptive Immunity as a Key Controller of Respiratory Syncytial Virus (RSV) Titer in Cotton Rats

Wethington, D.; Harder, O.; Uppulury, K.; Stewart, W.; Chen, P.; King, T.; Reynolds, S.; Peeples, M.; Niewiesk, S.; Das, J.

10.1101/451302 — microbiology — Posted on 2018-10-24

788 Self-Organized Critical Control of Genome Expression: Novel Scenario on Cell-Fate Decision

Tsuchiya, M.; Giuliani, A.; Yoshikawa, K.

10.1101/451260 — genomics — Posted on 2018-10-24

789 LEM domain proteins control the efficiency of adaptation through copy number variation

Colombi, P.; King, D. E.; Williams, J. F.; Lusk, C. P.; King, M. C.

10.1101/451583 — genetics — Posted on 2018-10-24

790 Integrated in vivo quantitative proteomics and nutrient tracing reveals age-related metabolic rewiring of pancreatic β-cell function

Wortham, M.; Benthuysen, J. R.; Wallace, M.; Savas, J. N.; Mulas, F.; Divakaruni, A. S.; Liu, F.; Albert, V.; Taylor, B. L.; Sui, Y.; Saez, E.; Murphy, A. N.; Yates, J. R.; Metallo, C. M.; Sander, M.

10.1101/451542 — physiology — Posted on 2018-10-24

791 Rapid, Affordable, Collection and Analysis of Bioaerosol Viral Pathogens (Begomoviruses and Whitefly Vectors)

Hunter, W. B.; McKenzie, C. L.; Mitchell, B. W.

10.1101/451559 — pathology — Posted on 2018-10-24

792 Identifying neurophysiological features associated with anesthetic state in newborn mice and humans

Chini, M.; Gretenkord, S.; Kostka, J. K.; Poepplau, J. A.; Cornelissen, L.; Berde, C. B.; Hanganu-Opatz, I. L.; Bitzenhofer, S. H.

10.1101/451831 — neuroscience — Posted on 2018-10-24

793 Sperm gatekeeping: 3D imaging reveals a constricted entrance to zebra finch sperm storage tubules

Mendonca, T.; Cadby, A. J.; Hemmings, N.

10.1101/451484 — evolutionary biology — Posted on 2018-10-24

794 A Machine Learning Approach To Map Tropical Selective Logging

Hethcoat, M. G.; Edwards, D. P.; Carreiras, J. M.; Bryant, R. G.; Franca, F. M.; Quegan, S.

10.1101/451856 — ecology — Posted on 2018-10-24

795 Single-cell RNA sequencing reveals novel cell differentiation dynamics during human airway epithelium regeneration

Ruiz Garcia, S.; Deprez, M.; Lebrigand, K.; Paquet, A.; Cavard, A.; Arguel, M.-J.; Magnone, V.; Caballero, I.; Leroy, S.; Marquette, C. H.; Marcet, B.; Barbry, P.; Zaragosi, L.-E.

10.1101/451807 — cell biology — Posted on 2018-10-24

796 Draft genome of the liver fluke Fasciola gigantica

Tripathi, T.; Ghosh, A.; Todur, V. N.; Kalita, P.; Rajendran, V.; Kalita, J.; Shukla, R.; Chetri, P. B.; Shukla, H.; Sonkar, A.; Lyngdoh, D. L.; Singh, R.; Chikara, S. K.; Tripathi, T.

10.1101/451476 — bioinformatics — Posted on 2018-10-24

797 Loss of TP73 function contributes to amyotrophic lateral sclerosis pathogenesis

Downie, J. M.; Gibson, S. B.; Tsetsou, S.; Russell, K. L.; Keefe, M. D.; Figueroa, K. P.; Bromberg, M. B.; Murtaugh, C.; Bonkowsky, J. L.; Pulst, S. M.; Jorde, L. B.

10.1101/451419 — genetics — Posted on 2018-10-24

798 Independent domestication events in the blue-cheese fungus Penicillium roqueforti

Dumas, E.; Feurtey, A.; Rodriguez de la Vega, R. C.; Le Prieur, S.; Snirc, A.; Coton, M.; Thierry, A.; Coton, E.; Le Piver, M.; Roueyre, D.; Ropars, J.; Branca, A.; Giraud, T.

10.1101/451773 — evolutionary biology — Posted on 2018-10-24

799 A small RNA controls bacterial resistance to gentamicin during iron starvation

Chareyre, S.; Frederic, B.; Mandin, P.

10.1101/451765 — molecular biology — Posted on 2018-10-24

800 Lipid unsaturation properties govern the sensitivity of membranes to photo-induced oxidative stress

Bour, A.; Kruglik, S. G.; Chabanon, M.; Rangamani, P.; Puff, N.; Bonneau, S.

10.1101/451591 — biophysics — Posted on 2018-10-24

801 Origins and Evolution of the Global RNA Virome

Dolja, V. V.; Wolf, Y. I.; Kazlauskas, D.; Iranzo, J.; Lucia-Sanz, A.; Kuhn, J. H.; Krupovic, M.; Koonin, E. V.

10.1101/451740 — microbiology — Posted on 2018-10-24

802 Discovery of the role of a SLOG superfamily biological conflict systems associated protein IodA (YpsA) in oxidative stress protection and cell division inhibition in Gram-positive bacteria

Brzozowski, R. S.; Graham, G.; Burroughs, A. M.; Huber, M.; Walker, M.; Alva, S. S.; Aravind, L.; Eswara, P. J.

10.1101/451617 — microbiology — Posted on 2018-10-24

803 Translational control of cardiac fibrosis

Chothani, S.; Schafer, S.; Adami, E.; Viswanathan, S.; Widjaja, A. A.; Langley, S. R.; Tan, J.; Chee, J. P.; D'Agostino, G.; van Heesch, S.; Witte, F.; Felkin, L. E.; Christodoulou, E. G.; Dong, J.; Blachut, S.; Patone, G.; Barton, P. J.; Hubner, N.; Cook, S. A.; Rackham, O. J.

10.1101/451666 — genomics — Posted on 2018-10-24

804 Microbiota profiling with long amplicons using Nanopore sequencing: full-length 16S rRNA gene and whole rrn operon

Cusco, A.; Catozzi, C.; Vines, J.; Sanchez, A.; Francino, O.

10.1101/450734 — microbiology — Posted on 2018-10-24

805 The impact of tumor stromal architecture on therapy response and clinical progression

Altrock, P.; Yoon, N.; Bull, J. A.; Wu, H.; Ruiz-Ramirez, J.; Miroshnychenko, D.; Kimmel, G. J.; Kim, E.; Vander Velde, R. J.; Rejniak, K.; Manley, B. J.; Spill, F.; Marusyk, A.

10.1101/451047 — cancer biology — Posted on 2018-10-24

806 AGEpy: a Python package for computational biology

Metge, F.; Sehlke, R.; Boucas, J.

10.1101/450890 — bioinformatics — Posted on 2018-10-24

807 Modelling cancer progression using Mutual Hazard Networks

Schill, R.; Solbrig, S.; Wettig, T.; Spang, R.

10.1101/450841 — bioinformatics — Posted on 2018-10-24

808 Organ-wide and ploidy-dependent regulations both contribute to cell size determination: evidence from a computational model of tomato fruit

Baldazzi, V.; Valsesia, P.; Genard, M.; Bertin, N.

10.1101/450916 — plant biology — Posted on 2018-10-24

809 The effect of presentation level on spectrotemporal modulation detection

Magits, S.; Moncada-Torres, A.; Van Deun, L.; Wouters, J.; van Wieringen, A.; Francart, T.

10.1101/450957 — neuroscience — Posted on 2018-10-24

810 Production of glycine-derived ammonia as a low-cost and long-distance antibiotic strategy by Streptomyces

Avalos, M.; Garbeva, P.; Raaijmakers, J. M.; van Wezel, G. P.

10.1101/450833 — microbiology — Posted on 2018-10-24

811 Antigen-specific T-cell receptor signatures of cytomegalovirus infection

Huth, A.; Liang, X.; Krebs, S.; Blum, H.; Moosmann, A.

10.1101/450882 — immunology — Posted on 2018-10-24

812 DNA barcodes for rapid, whole genome, single-molecule analyses

Wand, N.; Smith, D. A.; Wilkinson, A.; Rushton, A.; Busby, S. J. W.; Styles, I.; Neely, R. K.

10.1101/450809 — genomics — Posted on 2018-10-24

813 Single nucleotide polymorphisms of the c-MYC gene’s relationship with formation of Burkitt’s lymphoma using bioinformatics analysis

Sati, A. o. m.; Ahmed, w. a. o.; Ahmedon, E. A. M.; Yousif, S. H. E.; Dawoud, E. D. K.; Hassan, A. I. M.; Elsammani, M. A. I.; hassan, m. a. s.

10.1101/450783 — bioinformatics — Posted on 2018-10-24

814 Microglial SIRPα regulates the emergence of CD11c+ microglia and demyelination damage in white matter

Sato-Hashimoto, M.; Nozu, T.; Toriba, R.; Horikoshi, A.; Akaike, M.; Kawamoto, K.; Hirose, A.; Hayashi, Y.; Nagai, H.; Shimizu, W.; Saiki, A.; Ishikawa, T.; Elhanbaly, R.; Kotani, T.; Murata, Y.; Saito, Y.; Masae, M.; Shibasaki, K.; Oldenborg, P.-A.; Jung, S.; Matozaki, T.; Fukazawa, Y.; Ohnishi, H.

10.1101/443531 — neuroscience — Posted on 2018-10-24

815 Mathematical Modeling Identifies the Role of Adaptive Immunity as a Key Controller of Respiratory Syncytial Virus (RSV) Titer in Cotton Rats

Wethington, D.; harder, o.; Uppulury, K.; Stewart, W.; Chen, P.; King, T.; Reynolds, S.; Peeples, M. E.; Niewiesk, S.; Das, J.

10.1101/451716 — microbiology — Posted on 2018-10-24

816 Nuclear filamentous actin functions in the replication stress response

Lamm, N.; Masamsetti, V. P.; Read, M. N.; Biro, M.; Cesare, A.

10.1101/451708 — cell biology — Posted on 2018-10-24

817 Kinematic and Thermodynamic Limits on the Enhanced Diffusion of Enzymes

Feng, M.; Gilson, M. K.

10.1101/451682 — biophysics — Posted on 2018-10-24

818 Connectome architecture, gene expression and functional co-activation shape the propagation of misfolded proteins in neurodegenerative disease

Zheng, Y.-Q.; Zhang, Y.; Yau, Y. H. C.; Zeighami, Y.; Larcher, K.; Misic, B.; Dagher, A.

10.1101/449199 — neuroscience — Posted on 2018-10-24

819 Arginine methylation of DDX5 RGG/RG motif by PRMT5 regulates RNA/DNA resolution.

Richard, S.; Mersaoui, S.; Yu, Z.; Coulombe, Y.; Busatto, F.; Karam, M.; Masson, J.-Y.

10.1101/451823 — molecular biology — Posted on 2018-10-24

820 Crossover recombination and synapsis are linked by adjacent regions within the N terminus of the Zip1 synaptonemal complex protein

Voelkel-Meiman, K.; Cheng, S.-Y.; Parziale, M.; Morehouse, S. J.; Feil, A.; Davies, O. R.; de Muyt, A.; Borde, V.; MacQueen, A. J.

10.1101/451674 — genetics — Posted on 2018-10-24

821 Ecosystem tipping points in an evolving world

Dakos, V.; Matthews, B.; Hendry, A.; Levine, J.; Loeuille, N.; Norberg, J.; Nosil, P.; Scheffer, M.; De Meester, L.

10.1101/447227 — ecology — Posted on 2018-10-24

822 Anteroposterior patterning of the zebrafish ear through Fgf- and Hh-dependent regulation of hmx3a expression

Hartwell, R. D.; England, S. J.; Monk, N. A. M.; van Hateren, N. J.; Baxendale, S.; Marzo, M.; Lewis, K. E.; Whitfield, T. T.

10.1101/451963 — developmental biology — Posted on 2018-10-24

823 PathMe: Merging and exploring mechanistic pathway knowledge

Domingo-Fernandez, D.; Mubeen, S.; Marin-Llao, J.; Hoyt, C.; Hofmann-Apitius, M.

10.1101/451625 — bioinformatics — Posted on 2018-10-24

824 Transcriptional dynamics following freezing stress reveal selection for mechanisms of freeze tolerance at the poleward range margin in the cold water intertidal barnacle Semibalanus balanoides

Marshall, K. E.; Dowle, E. J.; Petrunina, A.; Kolbasov, G.; Chan, B. K. K.

10.1101/449330 — physiology — Posted on 2018-10-24

825 Visual plasticity and exercise revisited: no evidence for a \"cycling lane\"

Finn, A. E.; Baldwin, A. S.; Reynaud, A.; Hess, R. F.

10.1101/448498 — neuroscience — Posted on 2018-10-24

826 Metagenomic characterization of the viral community of the South Scotia Ridge

Yang, Q.; Gao, C.; Jiang, Y.; Wang, M.; Zhou, X.; Shao, H.; Gong, Z.; McMinn, A.

10.1101/451732 — microbiology — Posted on 2018-10-24

827 Liver ultrasound elastography for the evaluation of periportal fibrosis in schistosomiasis mansoni: A cross-sectional study

Carvalho Santos, J.; Doria Batista, A.; Maria Mola Vasconcelos, C.; Souza Lemos, R.; Romao de Souza Junior, V.; Dessein, A.; Dessein, H.; Maria Lucena Montenegro, S.; Pessoa Almeida Lopes, E.; Lucia Coutinho Domingues, A.

10.1101/450494 — bioengineering — Posted on 2018-10-24

828 Toxic Determinants of Staphylococcus aureus PSMα3 Cross-α Amyloid

Landau, M.; Tayeb-Fligelman, E.; Tabachnikov, O.

10.1101/452011 — biochemistry — Posted on 2018-10-24

829 A set of functionally-defined brain regions with improved representation of the subcortex and cerebellum

Seitzman, B. A.; Gratton, C.; Marek, S.; Raut, R. V.; Dosenbach, N. U.; Schlaggar, B. L.; Petersen, S. E.; Greene, D. J.

10.1101/450452 — neuroscience — Posted on 2018-10-24

830 A two-step probing method to compare lysine accessibility across macromolecular complex conformations

MacRae, A. J.; Coltri, P.; Hrabeta-Robinson, E.; Chalkley, R.; Burlingame, A.; Jurica, M. S.

10.1101/448605 — molecular biology — Posted on 2018-10-24

831 The global diversity of a major parasitic nematode is shaped by human intervention and climatic adaptation

Salle, G.; Doyle, S. R.; Cortet, J.; Cabaret, J.; Berriman, M.; Holroyd, N.; Cotton, J. A.

10.1101/450692 — genomics — Posted on 2018-10-24

832 Immigration from the metacommunity affects bdelloid rotifer community dynamics most

Debortoli, N.; De Laender, F.; Van Doninck, K.

10.1101/450627 — ecology — Posted on 2018-10-24

833 Alevin efficiently estimates accurate gene abundances from dscRNA-seq data

Srivastava, A.; Malik, L.; Smith, T. S.; Sudbery, I.; Patro, R.

10.1101/335000 — bioinformatics — Posted on 2018-10-24

834 MR-PET head motion correction based on co-registration of multi-contrast MR images

Chen, Z.; Sforazzini, F.; Baran, J.; Close, T. G.; Shah, N. J.; Egan, G. F.

10.1101/450676 — bioinformatics — Posted on 2018-10-24

835 Impaired chromosome segregation results in sperms with excess centrosomes in emb-27APC6 mutant C. elegans

Kondo, T.; Kimura, A.

10.1101/449538 — cell biology — Posted on 2018-10-24

836 Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)

Han, A. X.; Parker, E.; Scholer, F.; Maurer-Stroh, S.; Russell, C. A.

10.1101/446716 — bioinformatics — Posted on 2018-10-23

837 CDX4 regulates the progression of neural differentiation in the spinal cord

Joshi, P.; Darr, A. J.; Skromne, I.

10.1101/177469 — developmental biology — Posted on 2018-10-23

838 High-fat diet intake modulates maternal intestinal adaptations to pregnancy, and results in placental hypoxia and impaired fetal gut development

Gohir, W.; Kennedy, K. M.; Wallace, J. G.; Saoi, M.; Britz-McKibbin, P.; Petrik, J. J.; Surette, M. G.; Sloboda, D. M.

10.1101/436816 — developmental biology — Posted on 2018-10-23

839 E/I balance enables adaptation to coordinate a neural population for a stable sensory representation

Gutierrez, G. J.; Deneve, S.

10.1101/211748 — neuroscience — Posted on 2018-10-23

840 Cotranslational folding of a pentarepeat β-helix protein

Notari, L.; Martinez-Carranza, M.; Farias-Rico, J. A.; Stenmark, P.; Von Heijne, G.

10.1101/255810 — molecular biology — Posted on 2018-10-23

841 Are populations like a circuit? The relationship between isolation by distance and isolation by resistance

Lundgren, E.; Ralph, P. L.

10.1101/451328 — evolutionary biology — Posted on 2018-10-23

842 FGMP: assessing fungal genome completeness and gene content

Cisse, O. H.; Stajich, J. E.

10.1101/049619 — genomics — Posted on 2018-10-23

843 Multi-allele species reconstruction using ASTRAL

Rabiee, M.; Sayyari, E.; Mirarab, S.

10.1101/439489 — bioinformatics — Posted on 2018-10-23

844 Split-QF system for fine-tuned transgene expression in Drosophila

Riabinina, O.; Vernon, S. W.; Dickson, B.; Baines, R. A.

10.1101/451146 — neuroscience — Posted on 2018-10-23

845 INPP5E controls ciliary localization of phospholipids and odor response kinetics in a mouse model of Joubert syndrome

Ukhanov, K.; Uytingco, C.; Green, W.; Zhang, L.; Schurmans, S.; Martens, J. R.

10.1101/451344 — neuroscience — Posted on 2018-10-23

846 Opposing Influence of Sensory and Motor Cortex on Striatal Circuitry and Choice Behavior

Lee, C. R.; Yonk, A. J.; Wiskerke, J.; Paradiso, K. G.; Tepper, J. M.; Margolis, D. J.

10.1101/446708 — neuroscience — Posted on 2018-10-23

847 Homogenization of capillary flow and oxygenation in deeper cortical layers correlates with increased oxygen extraction

Li, B.; Esipova, T. V.; Sencan, I.; Kılıc, K.; Fu, B.; Desjardins, M.; Moeini, M.; Kura, S.; Yaseen, M. A.; Lesage, F.; Ostergaard, L.; Devor, A.; Boas, D. A.; Vinogradov, S. A.; Sakadzic, S.

10.1101/450932 — neuroscience — Posted on 2018-10-23

848 Comparative Performance of the Finite Element Method and the Boundary Element Fast Multipole Method for a Canonic Problem Mimicking Transcranial Magnetic Stimulation (TMS)

Htet, A. T.; Saturnino, G. B.; Burnham, E. H.; Makarov, S. N.

10.1101/411082 — bioengineering — Posted on 2018-10-23

849 CRISPR/Cas9-based Editing of a Sensitive Transcriptional Regulatory Element to Achieve Cell Type-Specific Knockdown of the NEMO Scaffold Protein

Babaei, M.; Liu, Y.; Wuerzberger-Davis, S. M.; Yeo, A. T.; Kagermazova, L.; McCaslin, E. Z.; Miyamoto, S.; Gilmore, T. D.

10.1101/450320 — molecular biology — Posted on 2018-10-23

850 Polygenic Adaptation: From sweeps to subtle frequency shifts

Hoellinger, I.; Pennings, P.; Hermisson, J.

10.1101/450759 — evolutionary biology — Posted on 2018-10-23

851 RERconverge: an R package for associating evolutionary rates with convergent traits

Kowalczyk, A.; Meyer, W. K.; Partha, R.; Mao, W.; Clark, N. L.; Chikina, M.

10.1101/451138 — evolutionary biology — Posted on 2018-10-23

852 Methodologic Issues in Doubly Labeled Water Measurements of Energy Expenditure During Very Low-Carbohydrate Diets

Hall, K. D.; Guo, J.; Chen, K. Y.; Leibel, R. L.; Reitman, M. L.; Rosenbaum, M.; Smith, S. R.; Ravussin, E.

10.1101/403931 — physiology — Posted on 2018-10-23

853 The genome of the plague-resistant great gerbil reveals species-specific duplication of an MHCII gene

Nilsson, P.; Solbakken, M. H.; Schmid, B. V.; Orr, R. J. S.; Lv, R.; Cui, Y.; Song, Y.; Zhang, Y.; Stenseth, N. C.; Yang, R.; Jakobsen, K. S.; Easterday, W. R.; Jentoft, S.

10.1101/449553 — genomics — Posted on 2018-10-23

854 Are populations like a circuit? The relationship between isolation by distance and isolation by resistance

Lundgren, E.; Ralph, P. L.

10.1101/451328 — evolutionary biology — Posted on 2018-10-23

855 A comparison of visual features used by humans and machines to classify wildlife

Miao, Z.; Gaynor, K. M.; Wang, J.; Liu, Z.; Muellerklein, O.; Norouzzadeh, M. S.; McInturff, A.; Bowie, R. C. K.; Nathon, R.; Yu, S. X.; Getz, W. M.

10.1101/450189 — ecology — Posted on 2018-10-23

856 Re-purposing Ac/Ds transgenic system for CRISPR/dCas9 modulation of enhancers and non-coding RNAs in zebrafish

Chong-Morrison, V.; Simoes, F. C.; Senanayake, U.; Carroll, D. S.; Riley, P. R.; Sauka-Spengler, T.

10.1101/450684 — developmental biology — Posted on 2018-10-23

857 Lexical Access in Comprehension vs. Production: Spatiotemporal Localization of Semantic Facilitation and Interference

Dirani, J.; Pylkkanen, L.

10.1101/449157 — neuroscience — Posted on 2018-10-23

858 Light-evoked activity and BDNF regulate mitochondrial dynamics and mitochondrial localized translation

Kreymerman, A.; Weinstein, J.; Shah, S. H.; Buickians, D. N.; Faust, A.; Merwe, Y. V. D.; Nahmou, M.; Cho, I.-J.; Huynh, S. K.; Verma, S.; Xin, X.-L.; Steketee, M.; Goldberg, J. L.

10.1101/438739 — neuroscience — Posted on 2018-10-23

859 Intracellular Burkholderia Symbionts Induce Extracellular Secondary Infections; Driving Diverse Host Outcomes that Vary by Genotype and Environment

Khojandi, N.; Haselkorn, T. S.; Eschbach, M. N.; Naser, R. A.; DiSalvo, S.

10.1101/448399 — microbiology — Posted on 2018-10-23

860 IgA-deficient humans exhibit gut microbiota dysbiosis despite production of compensatory IgM

Catanzaro, J. R.; Strauss, J. D.; Bielecka, A.; Porto, A. F.; Lobo, F. M.; Urban, A.; Schofield, W. B.; Palm, N.

10.1101/446724 — immunology — Posted on 2018-10-23

861 Murine MPDZ-Linked Hydrocephalus is Caused by Hyperpermeability of the Choroid Plexus

10.1101/446500 — neuroscience — Posted on 2018-10-23

862 Nanoscale organization of rotavirus replication machineries

Garces Suarez, Y.; Martinez, J. L.; Torres Hernandez, D.; Hernandez, H. O.; Mendez, M.; Wood, C.; Rendon-Mancha, J. M.; Silva-Ayala, D.; Lopez, S.; Guerrero, A.; Arias, C. F.

10.1101/445262 — microbiology — Posted on 2018-10-23

863 Cellular polarity asymmetrically functionalizes pathogen recognition receptor-mediated intrinsic immune response in human intestinal epithelium cells

Stanifer, M.; Muenchau, S.; Pervolaraki, K.; Kanaya, T.; Mukenhirn, M.; Albrecht, D.; Odendall, C.; Kagan, J.; Bartfeld, S.; Ohno, H.; Boulant, S.

10.1101/450668 — immunology — Posted on 2018-10-23

864 Bayesian Inference of Other Minds Explains Human Choices in Group Decision Making

Khalvati, K.; Park, S. A.; Mirbagheri, S.; Philippe, R.; Sestito, M.; Dreher, J.-C.; Rao, R. P. N.

10.1101/419515 — neuroscience — Posted on 2018-10-23

865 Influence of nutritional tyrosine on cognition and functional connectivity in healthy old humans

Hensel, C.; Becker, M.; Duezel, S.; Demuth, I.; Norman, K.; Steinhagen-Thiessen, E.; Gallinat, J.; Lindenberger, U.; Kuehn, S.

10.1101/450650 — neuroscience — Posted on 2018-10-23

866 Crystal Toxins and the volunteer’s dilemma in bacteria

Patel, M.; Raymond, B.; Bonsall, M. B.; West, S. A.

10.1101/437913 — evolutionary biology — Posted on 2018-10-23

867 Transgenic Mice and Pluripotent Stem Cells Express EGFP under the Control of miR-302 Promoter

Rahimi, K.; Parsa, S.; Nikzaban, M.; Mowla, S. J.; Fathi, F.

10.1101/450791 — developmental biology — Posted on 2018-10-23

868 Imaging Oxysterols in Mouse Brain by On-Tissue Derivatisation-Robotic Liquid Micro-Extraction Surface Analysis-Liquid Chromatography Mass Spectrometry

Griffiths, W. J.; Yutuc, E.; Angelini, R.; Baumert, M.; Mast, N.; Pikuleva, I.; Newton, J.; Clench, M. R.; Howell, O.; Wang, Y.

10.1101/450973 — neuroscience — Posted on 2018-10-23

869 Subthalamic nucleus optogenetic manipulations: a glimpse at deep brain stimulation mechanisms

Tiran-Cappello, A.; Pelloux, Y.; Brocard, C.; Degoulet, M.; Baunez, C.

10.1101/450767 — neuroscience — Posted on 2018-10-23

870 The Spectrum of Asynchronous Dynamics in Spiking Networks: A Theory for the Diversity of Non-Rhythmic Waking states in Neocortex

Zerlaut, Y.; Zucca, S.; Panzeri, S.; Fellin, T.

10.1101/427765 — neuroscience — Posted on 2018-10-23

871 Analysis of the gut and gill microbiome of resistant and susceptible lines of rainbow trout (Oncorhynchus mykiss)

Brown, R. M.; Wiens, G. D.; Salinas, I.

10.1101/420018 — microbiology — Posted on 2018-10-23

872 Sequential digestion with Trypsin and Elastase in cross-linking/mass spectrometry

Dau, T.; Gupta, K.; Berger, I.; Rappsilber, J.

10.1101/450981 — biochemistry — Posted on 2018-10-23

873 Fibrocyte accumulation in bronchi: a cellular hallmark of COPD

Dupin, I.; Thumerel, M.; Maurat, E.; Coste, F.; Begueret, H.; Trian, T.; Montaudon, M.; Marthan, R.; Girodet, P.-O.; Berger, P.

10.1101/449843 — physiology — Posted on 2018-10-23

874 Evoked zero-quantum coherence during consciousness

Kerskens, C.; Lopez Perez, D.

10.1101/219931 — neuroscience — Posted on 2018-10-23

875 Bipolar Switching by HCN Voltage Sensor Underlies Hyperpolarization Activation.

Cowgill, J.; Klenchin, V. A.; Alvarez-Baron, C.; Tewari, D.; Blair, A.; Chanda, B.

10.1101/406231 — neuroscience — Posted on 2018-10-23

876 Convective forces increase CXCR4-dependent glioblastoma cell invasion in GL261 murine model

Cornelison, R. C.; Brennan, C. E.; Kingsmore, K. M.; Munson, J. M.

10.1101/451286 — cancer biology — Posted on 2018-10-23

877 Establishing Synthesis Pathway-Host Compatibility via Enzyme Solubility

Amin, S. A.; Endalur Gopinarayanan, V.; Nair, N. U.; Hassoun, S.

10.1101/386144 — synthetic biology — Posted on 2018-10-23

878 Reversing compulsive cocaine seeking with low frequency deep brain stimulation of the subthalamic nucleus

Degoulet, M.; Tiran-Cappello, A.; Baunez, C.; Pelloux, Y.

10.1101/451203 — neuroscience — Posted on 2018-10-23

879 Parental lifespan extension improves offspring fitness

Lind, M. I.; Ravindran, S.; Sekajova, Z.; Carlsson, H.; Hinas, A.; Maklakov, A. A.

10.1101/405019 — evolutionary biology — Posted on 2018-10-23

880 Choice between 1- and 2-furrow cytokinesis in Caenorhabditis elegans embryos with tripolar spindles

Kondo, T.; Kimura, A.

10.1101/450478 — cell biology — Posted on 2018-10-23

881 Fix your membrane receptor imaging: Actin cytoskeleton and CD4 membrane organization disruption by chemical fixation

Pereira, P. M.; Albrecht, D.; Jacobs, C.; Marsh, M.; Mercer, J.; Henriques, R.

10.1101/450635 — cell biology — Posted on 2018-10-23

882 PGC-1α regulates mitochondrial calcium homeostasis, SR stress and cell death to mitigate skeletal muscle aging

Gill, J. F.; Delezie, J.; Santos, G.; McGuirk, S.; Schnyder, S.; Frank, S.; Rausch, M.; St-Pierre, J.; Handschin, C.

10.1101/451229 — cell biology — Posted on 2018-10-23

883 Enigma at the nanoscale: can the NPC act as an intrinsic reporter for isotropic expansion microscopy?

Pesce, L.; Cozzolino, M.; Lanzano, L.; Diaspro, A.; Bianchini, P.

10.1101/449702 — biophysics — Posted on 2018-10-23

884 Emotional Mirrors in the Rat’s Anterior Cingulate Cortex

Carrillo, M.; Han, Y.; Migliorati, F.; Liu, M.; Gazzola, V.; Keysers, C.

10.1101/450643 — neuroscience — Posted on 2018-10-23

885 150 years of research on Vierordt’s law - Fechner’s fault?

Glasauer, S.; Shi, Z.

10.1101/450726 — neuroscience — Posted on 2018-10-23

886 High-dimensional representation of texture in the somatosensory cortex of primates

Lieber, J. D.; Bensmaia, S.

10.1101/451187 — neuroscience — Posted on 2018-10-23

887 The hippocampus is necessary for the sleep-dependent consolidation of a task that does not require the hippocampus for initial learning

Schapiro, A. C.; Reid, A. G.; Morgan, A.; Manoach, D. S.; Verfaellie, M.; Stickgold, R.

10.1101/451195 — neuroscience — Posted on 2018-10-23

888 Communicating compositional patterns

Schulz, E.; Quiroga, F.; Gershman, S.

10.1101/451161 — animal behavior and cognition — Posted on 2018-10-23

889 A shift in aggregation avoidance strategy marks a long-term direction to protein evolution

Foy, S. G.; Wilson, B. A.; Bertram, J.; Cordes, M. H. J.; Masel, J.

10.1101/176867 — evolutionary biology — Posted on 2018-10-23

890 Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)

Han, A. X.; Parker, E.; Scholer, F.; Maurer-Stroh, S.; Russell, C.

10.1101/446716 — bioinformatics — Posted on 2018-10-23

891 Screening of antimicrobial activity and polyketide synthase gene identification from the Actinomycetes isolates

Srivastav, A.; Pofali, P.

10.1101/396846 — microbiology — Posted on 2018-10-23

892 Genome-wide sexually antagonistic variants reveal longstanding constraints on sexual dimorphism in the fruitfly

Ruzicka, F.; Hill, M. S.; Pennell, T. M.; Flis, I.; Ingleby, F. C.; Fowler, K.; Morrow, E. H.; Reuter, M.

10.1101/117176 — evolutionary biology — Posted on 2018-10-23

893 Adolescent Cognitive Control, Theta Oscillations, and Social Motivation

Buzzell, G. A.; Barker, T. V.; Troller-Renfree, S. V.; Bernat, E. M.; Bowers, M. E.; Morales, S.; Bowman, L. C.; Henderson, H. A.; Pine, D. S.; Fox, N. A.

10.1101/366831 — neuroscience — Posted on 2018-10-23

894 Single-trial characterization of neural rhythms: potentials and challenges

Kosciessa, J. Q.; Grandy, T. H.; Garrett, D. D.; Werkle-Bergner, M.

10.1101/356089 — neuroscience — Posted on 2018-10-23

895 Storage of prescription veterinary medicines on UK dairy farms: a cross-sectional study

Rees, G. M.; Barrett, D. C.; Buller, H. J.; Mills, H. L.; Reyher, K. K.

10.1101/342360 — epidemiology — Posted on 2018-10-23

896 N4-acetylcytidine and 5-formylcytidine are present in Saccharomyces cerevisiae mRNAs

Tardu, M.; Lin, Q.; Koutmou, K.

10.1101/327585 — biochemistry — Posted on 2018-10-23

897 Factors mediating synergism between vancomycin and chlorhexidine in VanA-type vancomycin-resistant Enterococcus faecium

Bhardwaj, P.; Islam, M.; Palmer, K. L.

10.1101/450593 — microbiology — Posted on 2018-10-23

898 Genome-wide sexually antagonistic variants reveal longstanding constraints on sexual dimorphism in the fruitfly

Ruzicka, F.; Hill, M. S.; Pennell, T. M.; Flis, I.; Gilks, W. P.; Ingleby, F. C.; Fowler, K.; Morrow, E. H.; Reuter, M.

10.1101/117176 — evolutionary biology — Posted on 2018-10-23

899 Molecular profiles and mutation burden analysis in Chinese patients with gastric carcinoma

Chen, C.; Shi, C.; Huang, X.; Zheng, J.; Zhu, Z.; Li, Q.; Qiu, S.; Huang, Z.; Zhuang, Z.; Wu, R.; Liu, P.; Wu, F.; Lin, S.; Li, B.; Zhang, X.; Chen, Q.

10.1101/449736 — cancer biology — Posted on 2018-10-23

900 Ring shape Golden Ratio multicellular structures are algebraically afforded by asymmetric mitosis and one to one cell adhesion

Butler, W.; Kinane, T. B.

10.1101/450528 — systems biology — Posted on 2018-10-23

901 Sonodynamic therapy as an adjunctivw treatment on porphyromonas gingivalis induced periodontitis in rats with diabetes

Ji, Z.; Zhang, H.; Zhuang, D.; Zhang, Y.; Hu, Z.; Cao, W.

10.1101/450585 — microbiology — Posted on 2018-10-23

902 Pervasive and Dynamic Transcription Initiation in Saccharomyces cerevisiae

Lu, Z.; Lin, Z.

10.1101/450429 — genomics — Posted on 2018-10-23

903 Cyclical environments drive variation in life history strategies: a general theory of cyclical phenology

Park, J. S.

10.1101/450387 — ecology — Posted on 2018-10-23

904 Transcriptome analysis of the human tibial nerve identifies sexually dimorphic expression of genes involved in pain, inflammation and neuro-immunity

Ray, P.; Khan, J.; Wangzhou, A.; Tavares-Ferreira, D.; Akopian, A. N.; Dussor, G.; Price, T. J.

10.1101/450197 — neuroscience — Posted on 2018-10-23

905 A simulation-based approach to improve decoded neurofeedback performance

Oblak, E. F.; Sulzer, J. S.; Lewis-Peacock, J. A.

10.1101/450403 — neuroscience — Posted on 2018-10-23

906 Subthalamic nucleus mediates the modulation on cocaine self-administration induced by ultrasonic vocalizations playback in rats

Montanari, C.; Giorla, E.; Pelloux, Y.; BAUNEZ, C.

10.1101/450437 — neuroscience — Posted on 2018-10-23

907 Changes in thalamocortical connectivity as a potential mechanism of cross-modal plasticity in congenitally blind individuals

Marins, T.; Russo, M.; Rodrigues, E.; Moll, J.; Felix, D.; Bouzas, J.; Arcanjo, H.; Vargas, C. D.; Tovar-Moll, F.

10.1101/449009 — neuroscience — Posted on 2018-10-23

908 Comparative mode of action of antimicrobial peptide melimine and its derivative Mel4 against Pseudomonas aeruginosa

YASIR, M.; Dutta, D.; Willcox, M. D. P.

10.1101/450577 — microbiology — Posted on 2018-10-23

909 Werner helicase control of human papillomavirus 16 E1-E2 DNA replication is regulated by SIRT1 deacetylation

Morgan, I. M.; Das, D.; Bristol, M.; Smith, N. W.; Wang, X.; Pichierri, P.

10.1101/450601 — microbiology — Posted on 2018-10-23

910 A Versatile Rapture (RAD-Capture) Platform for Genotyping Marine Turtles

Komoroske, L. M.; Miller, M.; O'Rourke, S.; Stewart, K.; Jensen, M.; Dutton, P.

10.1101/450445 — genomics — Posted on 2018-10-23

911 Look4TRs: A de-novo tool for detecting simple tandem repeats using self-supervised hidden Markov models.

Velasco, A.; James, B. T.; Wells, V. D.; Girgis, H. Z.

10.1101/449801 — bioinformatics — Posted on 2018-10-23

912 Latent developmental potential to form limb-like skeletal structures in zebrafish

Hawkins, M. B.; Henke, K.; Harris, M. P.

10.1101/450619 — evolutionary biology — Posted on 2018-10-23

913 Re-purposing Ac/Ds transgenic system for CRISPR/dCas9 modulation of enhancers and non-coding RNAs in zebrafish

Chong-Morrison, V.; Simoes, F. C.; Senanayake, U.; Carroll, D. S.; Riley, P. R.; Sauka-Spengler, T.

10.1101/450684 — developmental biology — Posted on 2018-10-23

914 Distinct mesoderm migration phenotypes in extra-embryonic and embryonic regions of the early mouse embryo

Saykali, B.; Mathiah, N.; Nahaboo, W.; Racu, M.-L.; Defrance, M.; Migeotte, I.

10.1101/438721 — developmental biology — Posted on 2018-10-23

915 Pre- and postsynaptically expressed spiking-timing-dependent plasticity contribute differentially to neuronal learning

Mizusaki, B. E. P.; Li, S. S. Y.; Costa, R. P.; Sjöström, J.

10.1101/450825 — neuroscience — Posted on 2018-10-23

916 Comparative metabonomic investigations of Schistosoma japonicum from SCID mice and BALB/c mice: clues to developmental abnormality of schistosome in the immunodeficient host

Liu, R.; Cheng, W.-J.; Tang, H.-B.; Zhong, Q.-P.; Ming, Z.-P.; Dong, H. F.

10.1101/450858 — biochemistry — Posted on 2018-10-23

917 Lexical Access in Comprehension vs. Production: Spatiotemporal Localization of Semantic Facilitation and Interference

Dirani, J.; Pylkkanen, L.

10.1101/449157 — neuroscience — Posted on 2018-10-23

918 The amplitude in periodic neural state trajectories underlies the tempo of rhythmic tapping

Gamez, J.; Mendoza, G.; Prado, L.; Betancourt, A.; Merchant, H.

10.1101/450817 — neuroscience — Posted on 2018-10-23

919 Assessment of Menstrual Hygiene Management and Its Determinants among Adolescent Girls: A Cross-Sectional Study in School adolescent girls in Addis Ababa, Ethiopia.

Gashaw, E. B.; Gashaw, E. B.; Ephrem Biruk, Worku Tefera, Nardos Tadesse, Ashagre Sisay,

10.1101/450007 — epidemiology — Posted on 2018-10-23

920 Drosophila scribble mutant tumors undergo a transition from a growth arrest state to a proliferative state over time

Ji, T.; Zhang, L.; Huang, S.; Deng, M.; Wang, Y.; Pham, T. T.; Sridhar, V.; Smith, A. A.; Cabernard, C.; Wang, J.; Yan, Y.

10.1101/450486 — developmental biology — Posted on 2018-10-23

921 Waves of maturation and senescence in micro-structural MRI markers of human cortical myelination over the lifespan

Grydeland, H.; Vertes, P. E.; Vasa, F.; Romero Garcia, R.; Whitaker, K. J.; Alexander-Bloch, A. F.; Bjornerud, A.; Patel, A. X.; Sedervicius, D.; Tamnes, C. K.; Westlye, L. T.; White, S. R.; Walhovd, K. B.; Fjell, A. M.; Bullmore, E. T.

10.1101/314195 — neuroscience — Posted on 2018-10-23

922 Seeing versus Knowing: The Temporal Dynamics of Real and Implied Colour Processing in the Human Brain

Teichmann, L.; Grootswagers, T.; Carlson, T.; Rich, A.

10.1101/369926 — neuroscience — Posted on 2018-10-23

923 Movement responses to environment: fast inference of variation among southern elephant seals with a mixed effects model

Jonsen, I.; McMahon, C.; Patterson, T.; Auger-Methe, M.; Harcourt, R.; Hindell, M.; Bestley, S.

10.1101/314690 — ecology — Posted on 2018-10-23

924 A genetically encoded fluorescent sensor for rapid and specific in vivo detection ofnorepinephrine

Feng, J.; Zhang, C.; Lischinsky, J.; Jing, M.; Zhou, J.; Wang, H.; Zhang, Y.; Dong, A.; Wu, Z.; Wu, H.; Chen, W.; Zhang, P.; Zou, J.; Hires, A.; Zhu, J.; Cui, G.; Lin, D.; Du, J.; Li, Y.

10.1101/449546 — neuroscience — Posted on 2018-10-23

925 Drosophila scribble mutant tumors undergo a transition from a growth arrest state to a proliferative state over time

Ji, T.; Zhang, L.; Huang, S.; Deng, M.; Wang, Y.; Pham, T. T.; Cabernard, C.; Wang, J.; Yan, Y.

10.1101/450486 — developmental biology — Posted on 2018-10-23

926 On-ratio PDMS bonding for multilayer microfluidic device fabrication

Lai, A.; Altemose, N.; White, J. A.; Streets, A. M.

10.1101/450544 — bioengineering — Posted on 2018-10-23

927 A comprehensive framework to capture the arcana of neuroimaging analysis

Close, T. G.; Ward, P. G. D.; Sforazzini, F.; Goscinski, W.; Chen, Z.; Egan, G.

10.1101/447649 — bioinformatics — Posted on 2018-10-22

928 Rhopalocnemis phalloides has one of the most reduced and mutated plastid genomes known

Schelkunov, M. I.; Nuraliev, M. S.; Logacheva, M. D.

10.1101/448787 — genomics — Posted on 2018-10-22

929 High-fat diet intake modulates maternal intestinal adaptations to pregnancy, and results in placental hypoxia and impaired fetal gut development

Gohir, W.; Kennedy, K. M.; Wallace, J. G.; Saoi, M.; Britz-McKibbin, P.; Petrik, J. J.; Surette, M. G.; Sloboda, D. M.

10.1101/436816 — developmental biology — Posted on 2018-10-22

930 A Type I Restriction-Modification System Associated with Enterococcus faecium Subspecies Separation

Huo, W.; Adams, H. M.; Trejo, C.; Badia, R.; Palmer, K. L.

10.1101/408914 — microbiology — Posted on 2018-10-22

931 Inductance in neural systems

Wang, H.; Wang, J.; Thow, X. Y.; Lee, C.

10.1101/343905 — neuroscience — Posted on 2018-10-22

932 Axenic Biofilm Formation and Aggregation by Synechocystis PCC 6803 is Induced by Changes in Nutrient Concentration, and Requires Cell Surface Structures

Allen, R. C.; Rittmann, B. E.; Curtiss, R.

10.1101/414151 — microbiology — Posted on 2018-10-22

933 The relationship between age, neural differentiation, and memory performance

Koen, J. D.; Hauck, N.; Rugg, M. D.

10.1101/345181 — neuroscience — Posted on 2018-10-22

934 IgA-deficient humans exhibit gut microbiota dysbiosis despite production of compensatory IgM

Catanzaro, J. R.; Strauss, J. D.; Bielecka, A.; Porto, A. F.; Lobo, F. M.; Urban, A.; Schofield, W. B.; Palm, N.

10.1101/446724 — immunology — Posted on 2018-10-22

935 A network module for the Perseus software for computational proteomics facilitates proteome interaction graph analysis

Rudolph, J. D.; Cox, J.

10.1101/447268 — bioinformatics — Posted on 2018-10-22

936 Massively parallel fitness profiling reveals multiple novel enzymes in Pseudomonas putida lysine metabolism

Thompson, M. G.; Blake-Hedges, J. M.; Cruz-Morales, P.; Barajas, J. F.; Curran, S. C.; Harris, N. C.; Benites, V. T.; Gin, J. W.; Eiben, C. B.; Sharpless, W. A.; Krishna, R. N.; Baidoo, E.; Petzold, C. J.; Arkin, A. P.; Deutschbauer, A. M.; Keasling, J. D.

10.1101/450254 — microbiology — Posted on 2018-10-22

937 Bayesian reassessment of the epigenetic architecture of complex traits

Trejo Banos, D.; McCartney, D. L.; Battram, T.; Hemani, G.; Walker, R. M.; Morris, S. W.; Zhang, Q.; Porteous, D. J.; McRae, A. F.; Wray, N. R.; Visscher, P. M.; Haley, C. S.; Evans, K. L.; Deary, I. J.; McIntosh, A. M.; Marioni, R. E.; Robinson, M.

10.1101/450288 — genomics — Posted on 2018-10-22

938 Naked mole rat hyaluronan - an extreme folding biopolymer

Kulaberoglu, Y.; Bhushan, B.; Hadi, F.; Chakrabarti, S.; Khaled, W.; Rankin, K.; St. John Smith, E.; Frankel, D.

10.1101/447631 — biophysics — Posted on 2018-10-22

939 Cortisol Predicts Antidepressant Treatment Outcome, Memory Improvement, and Brain Response to Negative Emotions: The Importance of Aging

Jain, F. A.; Connolly, C. G.; Reus, V. I.; Meyerhoff, D. J.; Yang, T. T.; Mellon, S. H.; Mackin, S.; Hough, C. M.; Morford, A.; Epel, E. S.; Wolkowitz, O. M.

10.1101/450213 — physiology — Posted on 2018-10-22

940 Genome sequence of the corn leaf aphid (Rhopalosiphum maidis Fitch)

Chen, W.; Shakir, S.; Bigham, M.; Fei, Z.; Jander, G.

10.1101/438499 — genomics — Posted on 2018-10-22

941 Metabolome-scale genome-wide association studies reveal chemical diversity and genetic control of maize specialized metabolites

Zhou, S.; Kremling, K.; Bandillo, N.; Richter, A.; Zhang, Y.; Ahern, K.; Artyukhin, A.; Hui, J.; Schroeder, F.; Buckler, E. S.; Jander, G.

10.1101/450338 — genetics — Posted on 2018-10-22

942 Hox gene expression in postmetamorphic juveniles of the brachiopod Terebratalia transversa

Gasiorowski, L.; Hejnol, A.

10.1101/449488 — developmental biology — Posted on 2018-10-22

943 Widespread alteration of protein autoinhibition in human cancers

Gsponer, J.; Jha, A.; Bui, J. M.; Na, D.

10.1101/450296 — cancer biology — Posted on 2018-10-22

944 Meta-analysis of Drought-tolerant Genotypes in Oryza sativa: A Network-based Approach

Sircar, S.; Parekh, N.

10.1101/450205 — bioinformatics — Posted on 2018-10-22

945 I know that I don’t know: Structural and functional connectivity underlying meta-ignorance in pre-schoolers

Filevich, E.; Garcia Forlim, C.; Fehrman, C.; Forster, C.; Paulus, M.; Shing, Y. L.; Kuehn, S.

10.1101/450346 — neuroscience — Posted on 2018-10-22

946 Genomic variants concurrently listed in a somatic and a germline mutation database have implications for disease-variant discovery and genomic privacy

Meyerson, W.; Gerstein, M. B.

10.1101/450239 — genomics — Posted on 2018-10-22

947 The molecular genetics of hand preference revisited

de Kovel, C. G. F.; Francks, C.

10.1101/447177 — genetics — Posted on 2018-10-22

948 A comparison of visual features used by humans and machines to classify wildlife

Miao, Z.; Gaynor, K. M.; Wang, J.; Liu, Z.; Muellerklein, O.; Norouzzadeh, M. S.; McInturff, A.; Bowie, R. C. K.; Nathon, R.; Yu, S. X.; Getz, W. M.

10.1101/450189 — ecology — Posted on 2018-10-22

949 Measuring the average power of neural oscillations

Izhikevich, L.; Gao, R.; Peterson, E.; Voytek, B.

10.1101/441626 — neuroscience — Posted on 2018-10-22

950 The Unreasonable Effectiveness of Convolutional Neural Networks in Population Genetic Inference

Flagel, L.; Brandvain, Y. J.; Schrider, D. R.

10.1101/336073 — evolutionary biology — Posted on 2018-10-22

951 Gorillas in our Midst: Gorilla.sc, a new web-based Experiment Builder

Anwyl-Irvine, A.; Massonnie, J.; Flitton, A.; Kirkham, N.; Evershed, J.

10.1101/438242 — neuroscience — Posted on 2018-10-22

952 rawMSA: End-to-end Deep Learning Makes Protein Sequence Profiles and Feature Extraction Obsolete

Mirabello, C.; Wallner, B.

10.1101/394437 — bioinformatics — Posted on 2018-10-22

953 Test-Retest Reliability of Task-based and Resting-state Blood Oxygen Level Dependence and Cerebral Blood Flow measures

Holiga, S.; Sambataro, F.; Lucy, C.; Greig, G.; Sarkar, N.; Renken, R. J.; Marsman, J.-B. C.; Schobel, S. A.; Bertolino, A.; Dukart, J.

10.1101/381251 — neuroscience — Posted on 2018-10-22

954 Fitness-dependent recombination can be evolutionarily advantageous in diploids under mutation-selection balance

Rybnikov, S. R.; Frenkel, Z. M.; Korol, A. B.

10.1101/381228 — evolutionary biology — Posted on 2018-10-22

955 RNA Binding Motif Protein 48 is required for U12 splicing and maize endosperm differentiation

Bai, F.; Corll, J.; Shodja, D. N.; Davenport, R.; Feng, G.; Mudunkothge, J.; Brigolin, C. J.; Martin, F.; Spielbauer, G.; Tseung, C.-W.; Seibert, A. E.; Barbazuk, W. B.; Lal, S.; Settles, A. M.

10.1101/341917 — plant biology — Posted on 2018-10-22

956 Post-translational modifications drive protein stability to control the dynamic beer brewing proteome

Kerr, E. D.; Schulz, B. L.

10.1101/358796 — biochemistry — Posted on 2018-10-22

957 Shifting up a gear with iDNA: from mammal detection events to standardized surveys

Abrams, J. F.; Hoerig, L.; Brozovic, R.; Axtner, J.; Crampton-Platt, A.; Mohamed, A.; Wong, S. T.; Sollmann, R.; Yu, D. W.; Wilting, A.

10.1101/449165 — ecology — Posted on 2018-10-22

958 Rapid embryonic cell cycles defer the establishment of heterochromatin by Eggless/SetDB1 in Drosophila

Seller, C. A.; Cho, C.-Y.; O'Farrell, P. H.

10.1101/450155 — developmental biology — Posted on 2018-10-22

959 Efficient Proximal Gradient Algorithm for Inference of Differential Gene Networks

Wang, C.; Gao, F.; Giannakis, G. B.; D'Urso, G.; Cai, X.

10.1101/450130 — bioinformatics — Posted on 2018-10-22

960 Comparison of Analytical Techniques for Thermal Stability Analysis of β-Cyclodextrin for an Ebola Virus Infection Treatment

Murillo, M.; Lodder, R.

10.1101/448928 — pharmacology and toxicology — Posted on 2018-10-22

961 Lexical Access in Comprehension vs. Production: Spatiotemporal Localization of Semantic Facilitation and Interference

Dirani, J.; Pylkkanen, L.

10.1101/449157 — neuroscience — Posted on 2018-10-22

962 The jellyfish genome sheds light on the early evolution of active predation

Kim, H.-M.; Weber, J. A.; Lee, N.; Park, S. G.; Cho, Y. S.; Bhak, Y.; Lee, N.; Jeon, Y.; Jeon, S.; Luria, V.; Karger, A.; Kirschner, M. W.; Jo, Y. J.; Woo, S.; Shin, K.; Chung, O.; Ryu, J.-C.; Yim, H.-S.; Lee, J.-H.; Edwards, J. S.; Manica, A.; Bhak, J.; Yum, S.

10.1101/449082 — genomics — Posted on 2018-10-22

963 Mutualism outcome across plant populations, microbes, and environments in the duckweed Lemna minor

O'Brien, A. M.; Laurich, J.; Lash, E.; Frederickson, M. E.

10.1101/448951 — ecology — Posted on 2018-10-22

964 Navigome: Navigating the Human Phenome

Gaspar, H. A.; Hübel, C.; Coleman, J. R.; Hanscombe, K. B.; Breen, G.

10.1101/449207 — bioinformatics — Posted on 2018-10-22

965 Directing voluntary temporal attention increases fixational stability

Denison, R. N.; Yuval-Greenberg, S.; Carrasco, M.

10.1101/449264 — neuroscience — Posted on 2018-10-22

966 Candidate Phyla Radiation Roizmanbacteria from hot springs have novel, unexpectedly abundant, and potentially alternatively functioning CRISPR-Cas systems

Chen, L.-X.; Al-Shayeb, B.; Meheust, R.; Li, W.-J.; Doudna, J. A.; Banfield, J. F.

10.1101/448639 — microbiology — Posted on 2018-10-22

967 Sex differences in IL-17 determine chronicity in male versus female urinary tract infection

Zychlinsky Scharff, A.; Rousseau, M.; Lacerda Mariano, L.; Canton, T.; Albert, M.; Fontes, M.; Duffy, D.; Ingersoll, M. A.

10.1101/449124 — immunology — Posted on 2018-10-22

968 Polygenic scores for major depressive disorder and depressive symptoms predict response to lithium in patients with bipolar disorder

Amare, A. T.; Schubert, K. O. T.; International Consortium on Lithium Genetics (ConLG), ; Schulze, T. G.; Baune, B.

10.1101/449363 — genomics — Posted on 2018-10-22

969 Single-cell RNA-seq reveals that glioblastoma recapitulates normal brain development

Couturier, C. P.; Ayyadhury, S.; Le, P. U.; Monlong, J.; Riva, G.; Allache, R.; Baig, S.; Yan, X.; Bourgey, M.; Lee, C.; Wang, Y. C. D.; Yong, V. W.; Guiot, M.-C.; Misic, B.; Antel, J.; Bourque, G.; Ragoussis, J.; Petrecca, K.

10.1101/449439 — cancer biology — Posted on 2018-10-22

970 Investigating the cytotoxic effects of the venom proteome of two species of the Viperidae family (Cerastes cerastes and Cryptelytrops purpureomaculatus) from various habitats

Ozverel, C. S.; Damm, M.; Hempel, B.-F.; Gocmen, B.; Sroka, R.; Suessmuth, R. D.; Nalbantsoy, A.

10.1101/449728 — biochemistry — Posted on 2018-10-22

971 The role of tactile interactions in flight responses in the Bronze Cory catfish (Corydoras aeneus)

Riley, R. J.; Gillie, B. R.; Jungwirth, A.; Savage, J.; Boogert, N. J.; Manica, A.

10.1101/449272 — animal behavior and cognition — Posted on 2018-10-22

972 Bayesian inference of metabolic kinetics from genome-scale multiomics data

St. John, P.; Strutz, J.; Broadbelt, L. J.; Tyo, K. E. J.; Bomble, Y. J.

10.1101/450163 — systems biology — Posted on 2018-10-22

973 Assessing mitochondrial function in angiosperms with highly divergent mitochondrial genomes

Havird, J. C.; Noe, G. R.; Link, L.; Torres, A.; Logan, D. C.; Sloan, D. B.; Chicco, A. J.

10.1101/448902 — plant biology — Posted on 2018-10-22

974 Unilateral relapse of Behcet’s disease-associated uveitis does not appear to cause asymmetric tear protein profiles

Liang, A.; Qin, W.; Zhao, C.; Gao, Y.

10.1101/449074 — molecular biology — Posted on 2018-10-22

975 LtrDetector: A modern tool-suite for detecting long terminal repeat retrotransposons de-novo on the genomic scale

Valencia, J. D.; Girgis, H. Z.

10.1101/448969 — bioinformatics — Posted on 2018-10-22

976 Red squirrel territorial vocalizations deter intrusions by conspecific rivals

Siracusa, E.; Morandini, M.; Boutin, S.; Humphries, M. M.; Dantzer, B.; Lane, J. E.; McAdam, A. G.

10.1101/448894 — animal behavior and cognition — Posted on 2018-10-22

977 Child Growth Predicts Brain Functional Connectivity and Future Cognitive Outcomes in Urban Bangladeshi Children Exposed to Early Adversities

Xie, W.; Jensen, S.; Wade, M.; Kumar, S.; Westerlund, A.; Shahria Kakon, S. H.; Haque, R.; Petri, W. A.; Nelson, C. A.

10.1101/447722 — neuroscience — Posted on 2018-10-22

978 powerTCR: a model-based approach to comparative analysis of the clone size distribution of the T cell receptor repertoire

Koch, H.; Starenki, D.; Cooper, S. J.; Myers, R. M.; Li, Q.

10.1101/297119 — immunology — Posted on 2018-10-22

979 A Model for the Peak-Interval Task Based on Neural Oscillation Delimited States

Tarraf Varella, T.; Reyes, M. B.; Caetano, M. S.; De Camargo, R. Y.

10.1101/448688 — animal behavior and cognition — Posted on 2018-10-22

980 A network of transcriptional repressors mediates auxin response specificity

Vernoux, T.; Truskina, J.; Han, J.; Galvan-Ampudia, C. S.; Laine, S.; Brunoud, G.; Porco, S.; Bagman, A.-M.; Smit, M. E.; Bennett, M.; Roudier, F.; Brady, S. M.; Bishopp, A.

10.1101/448860 — plant biology — Posted on 2018-10-22

981 A global map of RNA binding protein occupancy guides functional dissection of post-transcriptional regulation of the T cell transcriptome

Litterman, A. J.; Zhu, W. S.; Kageyama, R.; Zhao, W.; Zaitlen, N.; Erle, D. J.; Ansel, K. M.

10.1101/448654 — genomics — Posted on 2018-10-22

982 Parental infections disrupt clustered genes encoding related functions required for nervous system development in newborns

Friedenson, B.

10.1101/448845 — genomics — Posted on 2018-10-22

983 Biomechanics of the peafowl’s crest reveals frequencies tuned to social displays

Kane, S. A.; Van Beveren, D.; Dakin, R.

10.1101/197525 — zoology — Posted on 2018-10-22

984 Calculating the Effects of Autism Risk Gene Variants on Dysfunction of Biological Processes Identifies Clinically-Useful Information

Veatch, O. J.; Mazzotti, D. R.; Sutcliffe, J. S.; Schultz, R. T.; Abel, T.; Tunc, B.; Assouline, S. G.; Brodkin, E. S.; Michaelson, J. J.; Nickl-Jockschat, T.; Warren, Z. E.; Malow, B. A.; Pack, A. I.

10.1101/449819 — genetics — Posted on 2018-10-22

985 Deciphering epigenomic code for cell differentiation using deep learning

Ni, P.; Su, Z.

10.1101/449371 — bioinformatics — Posted on 2018-10-22

986 Modeling cellular response in large-scale radiogenomic databases to advance precision radiotherapy

Manem, V. S.; Lambie, M.; Smirnov, P.; Kofia, V.; Freeman, M.; Koritzinsky, M.; Abazeed, M. E.; Haibe-Kains, B.; Bratman, S. V.

10.1101/449793 — bioinformatics — Posted on 2018-10-22

987 Targeted memory reactivation during sleep elicits neural signals related to learning content

Wang, B.; Antony, J.; Lurie, S.; Brooks, P. P.; Paller, K. A.; Norman, K. A.

10.1101/449389 — neuroscience — Posted on 2018-10-22

988 Trem2 promotes anti-inflammatory responses in microglia and is suppressed under pro-inflammatory conditions

Liu, W.; Taso, O.; Wang, R.; Garcia-Reitboeck, P.; Andrews, W. D.; Piers, T. M.; Pocock, J. M.; Cummings, D. M.; Hardy, J.; Edwards, F. A.; Salih, D. A.

10.1101/449884 — neuroscience — Posted on 2018-10-22

989 The population history of northeastern Siberia since the Pleistocene

Sikora, M.; Pitulko, V.; Sousa, V.; Allentoft, M. E.; Vinner, L.; Rasmussen, S.; Margaryan, A.; de Barros Damgaard, P.; de la Fuente Castro, C.; Renaud, G.; Yang, M.; Fu, Q.; Dupanloup, I.; Giampoudakis, K.; Bravo Nogues, D.; Rahbek, C.; Kroonen, G.; Peyrot, M.; McColl, H.; Vasilyev, S.; Veselovskaya, E.; Gerasimova, M.; Pavlova, E.; Chasnyk, V.; Nikolskiy, P.; Grebenyuk, P.; Fedorchenko, A.; Lebedintsev, A.; Malyarchuk, B.; Meldgaard, M.; Martiniano, R.; Arppe, L.; Palo, J.; Sundell, T.; Mannermaa, K.; Putkonen, M.; Alexandersen, V.; Primeau, C.; Mahli, R.; Sjögren, K.-G.; Kristiansen, K.; W

10.1101/448829 — genomics — Posted on 2018-10-22

990 Rhopalocnemis phalloides has one of the most reduced and mutated plastid genomes known

Schelkunov, M. I.; Nuraliev, M. S.; Logacheva, M. D.

10.1101/448787 — genomics — Posted on 2018-10-22

991 Population dynamics of underdominance gene drive systems in continuous space

Champer, J.; Zhao, J.; Champer, S.; Liu, J.; Messer, P. W.

10.1101/449355 — genetics — Posted on 2018-10-22

992 Pesticide exposure affects flight dynamics and reduces flight endurance in bumblebees

Kenna, D.; Cooley, H.; Pretelli, I.; Ramos Rodrigues, A.; Gill, S.; Gill, R.

10.1101/449280 — ecology — Posted on 2018-10-22

993 Parallel comparison of pre-conditioning and post-conditioning effects in human cancers and keratinocytes upon acute gamma irradiation

Cohen, J.; Vo, N. T.; Seymour, C.; Mothersill, C.

10.1101/450106 — cancer biology — Posted on 2018-10-22

994 A relative comparison between Hidden Markov- and Log-Linear- based models for differential expression analysis in a real time course RNA sequencing data

Gholizadeh, F.; Salehi, Z.; Banaei-Moghaddam, A. M.; Rahimi Foroushani, A.; Kavousi, K.

10.1101/448886 — bioinformatics — Posted on 2018-10-22

995 Cholinergic interneurons as a novel target of CRF in the striatum that is spared by repeated stress

Lemos, J. C.; Shin, J. H.; Ingebretson, A. E.; Dobbs, L. K.; Alvarez, V. A.

10.1101/448571 — neuroscience — Posted on 2018-10-22

996 Probing the circuits of conscious perception with magnetophosphenes

Modolo, J.; Hassan, M.; Ruffini, G.; Legros, A.

10.1101/449769 — neuroscience — Posted on 2018-10-22

997 Novel diversity within marine Mamiellophyceae (Chlorophyta) unveiled by metabarcoding

Tragin, M.; Vaulot, D.

10.1101/449298 — microbiology — Posted on 2018-10-22

998 Mechanistic basis for decreased antimicrobial susceptibility in a clinical isolate of Neisseria gonorrhoeae possessing a mosaic-like mtr efflux pump locus

Rouquette-Loughlin, C.; Reimche, J. L.; Balthazar, J. T.; Dhulipala, V.; Gernert, K.; Kersh, E.; Pham, C.; Pettus, K.; Abrams, A. J.; Trees, D. L.; St, Cyr, S.; Shafer, W. M.

10.1101/448712 — microbiology — Posted on 2018-10-22

999 Identification and characterization of Aedes albopictus long noncoding RNAs provides insights into their roles in development and flavivirus infection

Azlan, A.; Yunus, M. A.; Azzam, G.

10.1101/448852 — genetics — Posted on 2018-10-22

1000 Muller’s Ratchet in Asexual Populations Doomed to Extinction

Chipkin, L.; Olofsson, P.; Daileda, R. C.; Azevedo, R. B. R.

10.1101/448563 — evolutionary biology — Posted on 2018-10-22

1001 IsoSense: frequency enhanced sensorless adaptive optics through structured illumination

Zurauskas, M.; Dobbie, I. M.; Parton, R. M.; Phillips, M. A.; Gohler, A.; Davis, I.; Booth, M.

10.1101/448613 — bioengineering — Posted on 2018-10-22

1002 Finding the P3 in the P600: Decoding shared neural mechanisms of responses to syntactic violations and oddball target detection

Sassenhagen, J.; Fiebach, C.

10.1101/449322 — neuroscience — Posted on 2018-10-22

1003 Feature-specific prediction errors for visual mismatch support predictive coding accounts of perception

Stefanics, G.; Stephan, K. E.; Heinzle, J.

10.1101/447243 — neuroscience — Posted on 2018-10-22

1004 Reconstructing the origins of the space-number association: spatial and number-magnitude codes must be used jointly to elicit spatially organised mental number lines.

Pinto, M.; Pellegrino, M.; Marson, F.; Lasaponara, S.; Doricchi, F.

10.1101/446930 — neuroscience — Posted on 2018-10-22

1005 Antifungal effects of 3-(4-Phenyl-thiazol-2-yl)-2-thioxo-2, 3-dihydro-1H-quinazolin-4-one against Aspergillus Species

Singh, D. D.; Tiwari, V. K.; Singh, R.; Sharma, G. L.; Dabur, R.

10.1101/448704 — microbiology — Posted on 2018-10-22

1006 sRNA-target Prediction Organizing Tool (SPOT) integrates computational and experimental data to facilitate functional characterization of bacterial small RNAs

King, A. M.; Vanderpool, C. K.; Degnan, P.

10.1101/448696 — microbiology — Posted on 2018-10-22

1007 Polygenic prediction of breast cancer: comparison of genetic predictors and implications for screening

Läll, K.; Lepamets, M.; Palover, M.; Esko, T.; Metspalu, A.; Tonisson, N.; Padrik, P.; Mägi, R.; Fischer, K.

10.1101/448597 — genetics — Posted on 2018-10-22

1008 Direct and transgenerational effects of an experimental heat wave on early life stages in a freshwater snail

Leicht, K.; Seppala, O.

10.1101/449777 — ecology — Posted on 2018-10-22

1009 Sensitivity and Specificity of Information Criteria

Dziak, J. J.; Coffman, D. L.; Lanza, S. T.; Li, R.; Jermiin, L. S.

10.1101/449751 — bioinformatics — Posted on 2018-10-22

1010 Are working memory training effects paradigm-specific?

Holmes, J.; Woolgar, F.; Hampshire, A.; Gathercole, S. E.

10.1101/450023 — neuroscience — Posted on 2018-10-22

1011 Molecular epidemiology of Colombian Histoplasma capsulatum isolates shows their polyphyletic behavior and point out raw chicken manure as one of the infections sources

Gomez-Londono, L. F.; Arango-Arteaga, M.; McEwen-Ochoa, J. G.; Gomez, O.; Zuluaga, A.; Pelaez-Jaramillo, C. A.; Acevedo-Ruiz, J. M.; Taylor, M. L.; Jimenez-Alzate, M. d. P.

10.1101/449876 — microbiology — Posted on 2018-10-22

1012 Axl-mediated activation of TBK1 drives epithelial plasticity in pancreatic cancer

Cruz, V. H.; Arner, E. N.; Du, W.; Bremauntz, A. E.; Brekken, R. A.

10.1101/450049 — cancer biology — Posted on 2018-10-22

1013 Cytologic, Genetic, and Proteomic Analysis of a Yellow Leaf Mutant of Sesame (Sesamum indicum L.), Siyl-1

Gao, T.; Wei, S.; Chen, J.; Wu, Y.; Li, F.; Wei, L.; Li, C.; Zeng, Y.; Tian, Y.; Wang, D.; Zhang, H.; Tongmei Gao, Shuangling Wei, Jing Chen, Yin Wu, Feng Li, Libin Wei, Chun Li, Yanjuan Zeng, Yuan Tian,

10.1101/449967 — genetics — Posted on 2018-10-22

1014 Timing and causes of the distribution pattern of Oncomelania hupensis estimated by molecular and geologic data

Ji, W.-b.; Xu, S.-x.; Bai, J.; Cui, Y.-y.; Zhou, X.-m.; Zou, J.-x.

10.1101/450031 — evolutionary biology — Posted on 2018-10-22

1015 Assessment of Menstrual Hygiene Management and Its Determinants among Adolescent Girls: A Cross-Sectional Study in School adolescent girls in Addis Ababa, Ethiopia.

Gashaw, E. B.; Ephrem Biruk, Worku Tefera, Nardos Tadesse, Ashagre Sisay,

10.1101/450007 — epidemiology — Posted on 2018-10-22

1016 Designer Sinorhizobium meliloti strains and multi-functional vectors for direct inter-kingdom transfer of high G+C content DNA

Brumwell, S. L.; MacLeod, M. R.; Huang, T.; Cochrane, R.; Meaney, R. S.; Zamani, M.; Matysiakiewicz, O.; Janakirama, P.; Edgell, D.; Charles, T. C.; Finan, T. M.; Karas, B. J.

10.1101/449991 — synthetic biology — Posted on 2018-10-22

1017 Apicomplexan motility depends on the operation of an endocytic-secretory cycle

Gras, S.; Jimenez-Ruiz, E.; M. Klinger, C.; Lemgruber, L.; Meissner, M.

10.1101/450080 — molecular biology — Posted on 2018-10-22

1018 Oral microbial dysbiosis linked to worsened periodontal condition in rheumatoid arthritis patients

Correa, J. D.; Fernandes, G.; Calderaro, D. C.; Souza Mendonca, S. M.; Silva, J. M.; Albiero, M. L.; Cunha, F.; Xiao, E.; Ferreira, G. A.; Teixeira, A. L.; MUKHERJEE, C.; Leys, E. J.; Silva, T.; Graves, D. T.

10.1101/450056 — microbiology — Posted on 2018-10-22

1019 Bayesian phylodynamics of avian influenza virus H9N2 in Asia with time-dependent predictors of migration

Yang, J.; Müller, N. F.; Bouckaert, R.; Xu, B.; Drummond, A. J.

10.1101/450064 — epidemiology — Posted on 2018-10-22

1020 Taking a deeper look: Quantifying the differences in fish assemblages between shallow and mesophotic temperate rocky reefs

Williams, J.; Jordan, A.; Harasti, D.; Davies, P.; Ingleton, T.

10.1101/449959 — ecology — Posted on 2018-10-22

1021 Disrupted reinforcement learning during post-error slowing in ADHD

Chevrier, A.; Bhaijiwala, M.; Lipszyc, J.; Cheyne, D.; Graham, S.; Schachar, R.

10.1101/449975 — neuroscience — Posted on 2018-10-22

1022 Adding function to the genome of African Salmonella ST313

Canals, R.; Hammarlöf, D. L.; Kröger, C.; Owen, S. V.; Fong, W. Y.; Lacharme-Lora, L.; Zhu, X.; Wenner, N.; Carden, S. E.; Honeycutt, J.; Monack, D. M.; Kingsley, R. A.; Brownridge, P.; Chaudhuri, R. R.; Rowe, W. P. M.; Predeus, A. V.; Hokamp, K.; Gordon, M. A.; Hinton, J.

10.1101/450098 — microbiology — Posted on 2018-10-22

1023 Aging Boosts Antiviral CD8+T Cell Memory Through Improved Engagement Of Diversified Recall Response Determinants

Davenport, B.; Eberlein, J.; Nguyen, T.; Victorino, F.; Jhun, K.; Abuirqeba, H.; van der Heide, V.; Heeger, P.; Homann, D.

10.1101/450072 — immunology — Posted on 2018-10-22

1024 Catch me if you can: Species interactions and moon illumination effect on mammals of tropical semi-evergreen forest of Manas National Park, Assam, India

Bhatt, U. M.; Habib, B.; Sarma, H.; LYNGDOH, S.

10.1101/449918 — animal behavior and cognition — Posted on 2018-10-22

1025 Genetic population variation and phylogeny of Sinomenium acutum (Menispermaceae) in subtropical China through chloroplast marker

Yang, H.; He, Y.; Guo, C.; Zeng, X.-y.; Xiong, X.-y.; Qiu, P.

10.1101/449900 — molecular biology — Posted on 2018-10-22

1026 Growth substrate may influence biofilm susceptibility to antibiotics

Williams, D.; Smith, S. R.; Peterson, B. R.; Allyn, G.; Epperson, R. T.; Looper, R. E.

10.1101/449892 — microbiology — Posted on 2018-10-22

1027 Prokaryotic community shifts during soil formation on sands in the tundra zone

Zhelezova, A.; Chernov, T.; Tkhakakhova, A.; Xenofontova, N.; Semenov, M.; Kutovaya, O.

10.1101/449926 — microbiology — Posted on 2018-10-22

1028 The impact of bilingualism on executive functions and working memory in young adults.

Anton, E.; Carreiras, M.; Dunabeitia, J. A.

10.1101/449827 — neuroscience — Posted on 2018-10-22

1029 Chemotactic motility and biofilm formation in Campylobacter jejuni are coordinated by the CheAYWVX system

Reuter, M.; Ultee, E.; toseafa, Y.; Tan, A.; van Vliet, A. H. M.

10.1101/449850 — microbiology — Posted on 2018-10-22

1030 Wakeful rest benefits memory when materials can be rehearsed

Millar, P. R.; Balota, D. A.

10.1101/449835 — animal behavior and cognition — Posted on 2018-10-22

1031 DNA-mediated self-assembly of gold nanoparticles on protein superhelix

Zhang, T.; Andre, I.

10.1101/449561 — biophysics — Posted on 2018-10-22

1032 Nonlinear and Nonlocal Elasticity in Coarse-Grained Differential-Tension Models of Epithelia

Haas, P. A.; Goldstein, R. E.

10.1101/449694 — biophysics — Posted on 2018-10-22

1033 Predicting the future with multi-scale successor representations

Momennejad, I.; Howard, M. W.

10.1101/449470 — neuroscience — Posted on 2018-10-22

1034 Bile canaliculi contract autonomously by releasing calcium into hepatocytes via mechanosensitive calcium channel

Gupta, K.; Ng, I. C.; Nguyen, B. P.; Tucker-Kellogg, L.; Low, B. C.; Yu, H.

10.1101/449512 — cell biology — Posted on 2018-10-22

1035 MicroRNA-200c suppresses epithelial-mesenchymal transition of ovarian cancer by targeting cofilin-2

Yu, X.; Zhang, Y.; Zhang, W.; Chen, H.

10.1101/449587 — cancer biology — Posted on 2018-10-22

1036 Characterization of BSN175: A Drug to Treat Prader-Willi Syndrome

Ackerman, A.; Lodder, R. A.

10.1101/448555 — pharmacology and toxicology — Posted on 2018-10-22

1037 Striking reduction in neurons and glial cells in anterior thalamic nuclei of older patients with Down’s syndrome

Perry, J. C.; Pakkenberg, B.; Vann, S. D.

10.1101/449678 — neuroscience — Posted on 2018-10-22

1038 Hemispheric asymmetry of globus pallidus relates to alpha modulation in reward-related attentional tasks

Mazzetti, C.; Staudigl, T.; Marshall, T. R.; Fallon, S. J.; Zumer, J. M.; Jensen, O.

10.1101/303016 — neuroscience — Posted on 2018-10-22

1039 Why would parthenogenetic females systematically produce males who never transmit their genes to females?

Grosmaire, M.; Launay, C.; Siegwald, M.; Felix, M.-A.; Gouyon, P.-H.; Delattre, M.

10.1101/449710 — evolutionary biology — Posted on 2018-10-22

1040 Impaired chromosome segregation results in sperms with excess centrosomes in emb-27APC6 mutant C. elegans

Kondo, T.; Kimura, A.

10.1101/449538 — cell biology — Posted on 2018-10-22

1041 Effects of age on the green autofluorescence of the skin and fingernails of healthy persons

Zhang, M.; Tao, Y.; Wu, D.; Li, Y.; Chen, X.; Ying, W.

10.1101/449660 — physiology — Posted on 2018-10-22

1042 A conserved principle of glial organization in the paleocortex and neocortex

Pinto-Duarte, A.; Sejnowski, T. J.; Srinivasan, S.

10.1101/449421 — neuroscience — Posted on 2018-10-22

1043 Scaling principles of distributed circuits

Srinivasan, S.; Stevens, C.

10.1101/449447 — neuroscience — Posted on 2018-10-22

1044 Complement 3 signaling is necessary for the developmental refinement of olfactory bulb circuitry

Lehmann, K. S.; Wood, A.; Cummings, D.; Bai, L.; Stevens, B.; Belluscio, L.

10.1101/449454 — neuroscience — Posted on 2018-10-22

1045 Developmental and conditional dynamics of gene expression in single root cells of A. thaliana

Jean-Baptiste, K.; McFaline-Figueroa, J. L.; Alexandre, C. M.; Dorrity, M. W.; Saunders, L.; Bubb, K. L.; Trapnell, C.; Fields, S.; Queitsch, C.; Cuperus, J. T.

10.1101/448514 — genetics — Posted on 2018-10-22

1046 The ability of transcription factors to differentially regulate gene expression is a crucial component of the mechanism underlying inversion, a frequently observed genetic interaction pattern

Amini, S.; Jacobsen, A.; Ivanova, O.; Lijnzaad, P.; Heringa, J.; Holstege, F. C.; Feenstra, K. A.; Kemmeren, P.

10.1101/449520 — genetics — Posted on 2018-10-22

1047 Evolution of gene regulatory networks by means of selection and random genetic drift

Kioukis, A.; Pavlidis, P.

10.1101/449645 — bioinformatics — Posted on 2018-10-22

1048 Heart Rate n-Variability (HRnV): A Novel Representation of Beat-to-Beat Variation in Electrocardiography

Liu, N.; Guo, D.; Koh, Z. X.; Ho, A. F. W.; Ong, M. E. H.

10.1101/449504 — bioengineering — Posted on 2018-10-22

1049 Phoneme-level processing in low-frequency cortical responses to speech explained by acoustic features

Daube, C.; Ince, R.; Gross, J.

10.1101/448134 — neuroscience — Posted on 2018-10-22

1050 Reduced Default Mode Network Functional Connectivity in Recurrent Patients with Major Depressive Disorder: Evidence from 25 Cohorts

Yan, C.-G.; Chen, X.; Li, L.; Castellanos, F. X.; Bai, T.-J.; Bo, Q.-J.; Chen, G.-M.; Chen, N.-X.; Chen, W.; Cheng, C.; Cheng, Y.-Q.; Cui, X.-L.; Duan, J.; Fang, Y.-R.; Gong, Q.-Y.; Guo, W.-B.; Hou, Z.-H.; Hu, L.; Kuang, L.; Li, F.; Li, K.-M.; Li, T.; Liu, Y.-S.; Liu, Z.-N.; Long, Y.-C.; Luo, Q.-H.; Meng, H.-Q.; Peng, D.-H.; Qiu, H.-T.; Qiu, J.; Shen, Y.-D.; Shi, Y.-S.; Si, T.-M.; Wang, C.-Y.; Wang, F.; Wang, K.; Wang, L.; Wang, X.; Wang, Y.; Wu, X.-P.; Wu, X.-R.; Xie, G.-R.; Xie, H.-Y.; Xie, P.; Xu, X.-F.; Yang, H.; Yang, J.; Yao, J.-S.; Yao, S.-Q.; Yin, Y.-Y.; Yuan, Y.-G.; Zhang, A.-X.; Zhan

10.1101/321745 — neuroscience — Posted on 2018-10-22

1051 The genome of the plague-resistant great gerbil reveals species-specific duplication of an MHCII gene

Nilsson, P.; Solbakken, M. H.; Schmid, B. V.; Orr, R. J. S.; Lv, R.; Cui, Y.; Song, Y.; Zhang, Y.; Stenseth, N. C.; Yang, R.; Jakobsen, K. S.; Easterday, W. R.; Jentoft, S.

10.1101/449553 — genomics — Posted on 2018-10-22

1052 Loss of ZnT8 function protects against diabetes by enhanced insulin secretion

Dwivedi, O. P.; Lehtovirta, M.; Hastoy, B.; Chandra, V.; Kleiner, S.; Jain, D.; Richard, A.-M.; Beer, N. L.; Krentz, N. A. J.; Prasad, R. B.; Hansson, O.; Ahlqvist, E.; Krus, U.; Artner, I.; Gomez, D.; Baras, A.; Abaitua, F.; Champon, B.; Payne, A. J.; Moralli, D.; Thomsen, S. K.; Kramer, P.; Spiliotis, I.; Ramracheya, R.; Chabosseau, P.; Theodoulou, A.; Cheung, R.; Bunt, M. v. d.; Flannick, J.; Trombetta, M.; Bonora, E.; Wolheim, C. B.; Sarelin, L.; Bonadonna, R. C.; Rorsman, P.; Rutter, G. A.; Davies, B.; Brosnan, J.; McCarthy, M. I.; Otonkoski, T.; Lagerstedt, J. O.; Gromada, J.; Gloyn, A.

10.1101/436030 — genetics — Posted on 2018-10-22

1053 Climate explains recent population divergence, introgression and persistence in tropical mountains: phylogenomic evidence from Atlantic Forest warbling finches

Raposo do Amaral, F.; Alvarado-Serrano, D.; Maldonado-Coelho, M.; Pellegrino, K. C. M.; Miyaki, C. Y.; Montesanti, J. A. C.; Lima-Ribeiro, M. S.; Hickerson, M. J.; Thom, G.

10.1101/439265 — evolutionary biology — Posted on 2018-10-22

1054 MicroED data collection with SerialEM

de la Cruz, M. J.; Martynowycz, M. W.; Hattne, J.; Gonen, T.

10.1101/446658 — biophysics — Posted on 2018-10-22

1055 Acute but not inherited demyelination in mouse models leads to brain tissue stiffness changes

Eberle, D.; Fodelianaki, G.; Kurth, T.; Jagielska, A.; Moellmert, S.; Ulbricht, E.; Wagner, K.; Taubenberger, A. V.; Traeber, N.; Escolano, J.-C.; Franklin, R.; Van Vliet, K. J.; Guck, J.

10.1101/449603 — biophysics — Posted on 2018-10-22

1056 A comprehensive framework to capture the arcana of neuroimaging analysis

Close, T. G.; Ward, P. G. D.; Sforazzini, F.; Chen, Z.; Goscinski, W.; Egan, G.

10.1101/447649 — bioinformatics — Posted on 2018-10-22

1057 Macrophage migration inhibitory factor (MIF) of Syrian golden hamster (Mesocricetus auratus) has similar structure and function as human MIF and promotes pancreatic tumor growth in vivo

Dash, P.; Sundaram, R.; Suresh, V.; Sabat, S. C.; Mohapatra, D.; Mohanty, S.; Vasudevan, D.; Senapati, S.

10.1101/449629 — biochemistry — Posted on 2018-10-22

1058 LRRK2 exonic variants associated with Parkinson’s disease augment phosphorylation levels for LRRK2-Ser1292 and Rab10-Thr73

Christensen, K. V.; Hentzer, M.; Oppermann, F. S.; Elschenbroich, S.; Dossang, P.; Thirstrup, K.; Egebjerg, J.; Williamson, D. S.; Smith, G. P.

10.1101/447946 — biochemistry — Posted on 2018-10-22

1059 Cortico-brainstem mechanisms of biased perceptual decision-making in the context of pain

Wiech, K.; Eippert, F.; Vandekerckhove, J.; Zaman, J.; Placek, K.; Tuerlinckx, F.; Vlaeyen, J. W. S.; Tracey, I.

10.1101/449652 — neuroscience — Posted on 2018-10-22

1060 Interplay between consensus and divergent RNA polymerase II C-terminal domain repeats in viability and targeting

Lu, F.; Portz, B.; Gilmour, D. S.

10.1101/448506 — molecular biology — Posted on 2018-10-22

1061 mTORC1 Restricts Hepatitis C Virus Replication Through ULK1-mediated Suppression of miR-122 and Facilitates Post-replication Events

Johri, M. K.; Lashkari, H. V.; Vedagiri, D.; Gupta, D.; Harshan, K.

10.1101/446757 — microbiology — Posted on 2018-10-22

1062 Evolution of hominin detoxification: Neanderthal and modern human AHR respond similarly to TCDD

Aarts, J. M. M. J. G.; Alink, G. M.; Franssen, H. J.; Roebroeks, W.

10.1101/445239 — evolutionary biology — Posted on 2018-10-22

1063 Targeting BMI1 and MCL1 for Lung Adenocarcinoma Treatment

Lin, E.-H.; Hsu, C.-F.; Jan, Y.-H.; Lin, T.-H.; Chang, H.-Y.; Cheng, C.-M.; Hsu, H.-J.; Chen, W.-W.; Chen, B.-H.; Tsai, H.-F.; Li, J.-J.; Huang, C.-Y.; Chuang, S.-H.; Chang, J.-M.; Hsiao, M.; Wu, C.-W.

10.1101/344275 — cancer biology — Posted on 2018-10-22

1064 The TMCrys server for supporting crystallization of transmembrane proteins

Varga, J. K.; Tusnady, G.

10.1101/446054 — bioinformatics — Posted on 2018-10-22

1065 Gating modules of the AMPA receptor pore domain revealed by unnatural amino acid mutagenesis

Poulsen, M.; Poshtiban, A.; Klippenstein, V.; Ghisi, V.; Plested, A.

10.1101/449181 — neuroscience — Posted on 2018-10-21

1066 Epiblast formation by Tead-Yap-dependent expression of pluripotency factors and competitive elimination of unspecified cells

Hashimoto, M.; Sasaki, H.

10.1101/449397 — developmental biology — Posted on 2018-10-21

1067 Temporal correlation of elevated PRMT1 gene expression with mushroom body neurogenesis during bumblebee brain development

Guan, C.; Egertova, M.; Perry, C. J.; Chittka, L.; Chittka, A.

10.1101/449116 — developmental biology — Posted on 2018-10-21

1068 SpermQ - a simple analysis software to comprehensively study flagellar beating and sperm steering

Hansen, J. N.; Rassmann, S.; Jikeli, J. F.; Wachten, D.

10.1101/449173 — cell biology — Posted on 2018-10-21

1069 The Caspase-3 homolog DrICE regulates endocytic trafficking during Drosophila tracheal morphogenesis

McSharry, S.; Beitel, G. J.

10.1101/448944 — cell biology — Posted on 2018-10-21

1070 Rapid high throughput SYBR green assay for identifying the malaria vectors Anopheles arabiensis, Anopheles coluzzii and Anopheles gambiae s.s. Giles

Chabi, J.; Van't Hof, A.; N'Dri, L. K.; Datsomor, A.; Okyere, D.; Njoroge, H.; Pipini, D.; Hadi, M.; De Souza, D. K.; Suzuki, T.; Dadzie, S. K.; Jamet, H. P.

10.1101/448910 — molecular biology — Posted on 2018-10-21

1071 Minor allele frequency thresholds strongly affect population structure inference with genomic datasets

Linck, E. B.; Battey, C. J.

10.1101/188623 — genomics — Posted on 2018-10-21

1072 JNK-IN-8, a c-Jun N-terminal kinase inhibitor, improves functional recovery through suppressing neuroinflammation in ischemic stroke

Geng, W.; Tang, H.; Dai, Q.; Hong, W.; Han, K.; Jia, D.; Mo, Y.; Lv, Y.; Fu, H.; Zheng, J.

10.1101/449496 — cancer biology — Posted on 2018-10-21

1073 Molecular phylogeny and diversification timing of the Nemouridae family (Insecta, Plecoptera) in the Japanese Archipelago

Gamboa, M.; Muranyi, D.; Kanmori, S.; Watanabe, K.

10.1101/440529 — evolutionary biology — Posted on 2018-10-21

1074 Finding cell-specific expression patterns in the early Ciona embryo with single cell RNA-seq

Ilsley, G. R.; Suyama, R.; Noda, T.; Satoh, N.; Luscombe, N. M.

10.1101/197699 — developmental biology — Posted on 2018-10-21

1075 The macrocyclizing protease butelase 1 remains auto-catalytic and reveals the structural basis for ligase activity

James, A. M.; Haywood, J.; Leroux, J.; Ignasiak, K.; Elliott, A. G.; Schmidberger, J. W.; Fisher, M. F.; Nonis, S. G.; Fenske, R.; Bond, C. S.; Mylne, J. S.

10.1101/380295 — biophysics — Posted on 2018-10-21

1076 A fast and general method to empirically estimate the complexity of distributed causal interactions in the brain

Comolatti, R.; Pigorini, A.; Casarotto, S.; Fecchio, M.; Faria, G.; Sarasso, S.; Rosanova, M.; Gosseries, O.; Boly, M.; Bodart, O.; Ledoux, D.; Brichant, J.-F.; Nobili, L.; Laureys, S.; Tononi, G.; Massimini, M.; Casali, A. G.

10.1101/445882 — neuroscience — Posted on 2018-10-21

1077 Semi-soft Clustering of Single Cell Data

Zhu, L.; Lei, J.; Klei, L.; Devlin, B.; Roeder, K.

10.1101/285056 — genetics — Posted on 2018-10-21

1078 Autophagy is essential for optimal Fe translocation to seeds in Arabidopsis

Pottier, M.; Dumont, J.; Masclaux-Daubresse, C.; Thomine, S.

10.1101/313254 — plant biology — Posted on 2018-10-21

1079 GFP-Forked, a genetic reporter for studying Drosophila oocyte polarity

Abdu, U.; Baskar, R.; Anya, B.

10.1101/449090 — developmental biology — Posted on 2018-10-21

1080 Brain dynamics and temporal trajectories during task and naturalistic processing

Venkatesh, M.; Jaja, J.; Pessoa, L.

10.1101/380402 — neuroscience — Posted on 2018-10-21

1081 A Mathematical Model Relating Pitocin Use During Labor with Offspring Autism Development in Terms of Oxytocin Receptor Desensitization in the Fetal Brain

Gottlieb, M. M.

10.1101/446997 — neuroscience — Posted on 2018-10-21

1082 Transposon accumulation lines uncover histone H2A.Z-driven integration bias towards environmentally responsive genes

Quadrana, L.; Etcheverry, M.; Gilly, A.; Caillieux, E.; Madoui, M.-A.; Guy, J.; Bortolini Silveira, A.; Engelen, S.; Baillet, V.; Wincker, P.; Aury, J.-M.; Colot, V.

10.1101/447870 — genomics — Posted on 2018-10-21

1083 The integration of visual and target signals in V4 and IT during visual object search

Roth, N. C.; Rust, N.

10.1101/370049 — neuroscience — Posted on 2018-10-21

1084 Supply and consumption of glucose 6-phosphate in the chloroplast stroma

Preiser, A. L.; Banerjee, A.; Fisher, N.; Sharkey, T. D.

10.1101/442434 — biochemistry — Posted on 2018-10-21

1085 Segregational drift and the interplay between plasmid copy number and evolvability

Ilhan, J.; Kupczok, A.; Woehle, C.; Wein, T.; Huelter, N. F.; Rosenstiel, P.; Landan, G.; Mizrahi, I.; Dagan, T.

10.1101/369579 — microbiology — Posted on 2018-10-21

1086 CRISPR/Cas9 screens Reveal Dasatinib Targets of Inhibiting T cell Activation and Proliferation

Wang, M.; Chen, Q.; Liu, H.; Chen, H.; Wang, B.; Zhang, W.; Mading, A.; Li, W.; Li, S.; Liu, H.; Gu, Z.; Liu, S.; Guo, R.; Li, W.; Xiao, T.; Wu, F.

10.1101/448662 — cancer biology — Posted on 2018-10-21

1087 Visual control of landing maneuvers in houseflies on vertical and inverted surfaces

Balebail, S.; Raja, S. K.; Sane, S. P.

10.1101/448472 — animal behavior and cognition — Posted on 2018-10-21

1088 Transcytosis maintains CFTR apical polarity in the face of constitutive and mutation-induced basolateral missorting

Bidaud-Meynard, A.; Bossard, F.; Schnur, A.; Fukuda, R.; Veit, G.; Xu, H.; Lukacs, G. L.

10.1101/411322 — cell biology — Posted on 2018-10-20

1089 Geometric principles of second messenger dynamics in dendritic spines

Cugno, A.; Bartol, T. M.; Sejnowski, T. J.; Iyengar, R.; Rangamani, P.

10.1101/444489 — biophysics — Posted on 2018-10-20

1090 Receptor crosstalk improves concentration sensing of multiple ligands

Carballo-Pacheco, M.; Desponds, J.; Gravilchenko, T.; Mayer, A.; Prizak, R.; Reddy, G.; Nemenman, I.; Mora, T.

10.1101/448118 — cell biology — Posted on 2018-10-20

1091 Proteomics reveals profound metabolic changes in the alcohol use disorder brain

Enculescu, C.; Kerr, E. D.; Yeo, B. K. Y.; Dodd, P. R.; Schenk, G.; Fortes, M. R. S.; Schulz, B. L.

10.1101/447912 — biochemistry — Posted on 2018-10-20

1092 Cell type-specific role of lamin-B1 and its inflammation-driven reduction in organ building and aging

Yue, S.; Zheng, X.; Zheng, Y.

10.1101/448837 — immunology — Posted on 2018-10-20

1093 Model selection for biological crystallography

Babcock, N. S.; Keedy, D. A.; Fraser, J. S.; Sivak, D. A.

10.1101/448795 — biophysics — Posted on 2018-10-20

1094 A piggyBac-based toolkit for inducible genome editing in mammalian cells

Schertzer, M. D.; Thulson, E.; Braceros, K. C. A.; Lee, D. M.; Hinkle, E. R.; Murphy, R. M.; Kim, S. O.; Vitucci, E. C. M.; Calabrese, J. M.

10.1101/448803 — molecular biology — Posted on 2018-10-20

1095 CRISPR/Cas9 screens Reveal Dasatinib Targets of Inhibiting T cell Activation and Proliferation

Wang, M.; Chen, Q.; Liu, H.; Chen, H.; Wang, B.; Zhang, W.; Mading, A.; Li, W.; Li, S.; Liu, H.; Gu, Z.; Liu, S.; Guo, R.; Li, W.; Xiao, T.; Wu, F.

10.1101/448662 — cancer biology — Posted on 2018-10-20

1096 Nanoscale robots exhibiting quorum sensing

Amir, Y.; Abu-Horowitz, A.; Werfel, J.; Bachelet, I.

10.1101/448761 — synthetic biology — Posted on 2018-10-20

1097 Relative Principal Components Analysis: Application to Analyzing Biomolecular Conformational Changes

Ahmad, M.; Helms, V.; Kalinina, O. V.; Lengauer, T.

10.1101/409474 — biophysics — Posted on 2018-10-20

1098 Effect of fire and thinning on fine-scale genetic structure and gene flow in fire-suppressed populations of sugar pine (Pinus lambertiana Douglas)

Lind, B. M.; North, M. P.; Maloney, P. E.; Eckert, A. J.

10.1101/448522 — ecology — Posted on 2018-10-20

1099 Risk factors contributing to Bacteraemia at a Tertiary Cancer Center in South Asia

Lenaduwe, S. L. A.; Sandunika, A.; Widanagamage, R.; Dias, P.; Gunesekera, S.

10.1101/386193 — cancer biology — Posted on 2018-10-20

1100 Expansion of a core regulon by transposable elements promotes Arabidopsis chemical diversity and pathogen defense

Barco, B.; Kim, Y.; Clay, N. K.

10.1101/368340 — plant biology — Posted on 2018-10-20

1101 Phenotypic and metabolic plasticity shapes life-history strategies under combinations of abiotic stresses

Shaar-Moshe, L.; Hayouka, R.; Roessner, U.; Peleg, Z.

10.1101/328062 — plant biology — Posted on 2018-10-20

1102 Model-based analysis of positive selection significantly expands the list of cancer driver genes, including RNA methyltransferases

Zhao, S.; Liu, J.; Nanga, P.; Liu, Y.; Cicek, E.; Knoblauch, N.; He, C.; Stephens, M.; He, X.

10.1101/366823 — genomics — Posted on 2018-10-20

1103 Translational regulation of Syngap1 by FMRP modulates NMDAR mediated signalling

Paul, A.; Nawalpuri, B.; Sateesh, S.; Muddashetty, R. S.; Clement, J. P.

10.1101/345058 — neuroscience — Posted on 2018-10-20

1104 Disruption in A-to-I editing levels affects C. elegans development more than a complete lack of editing

Ganem, N. S.; Ben-Asher, N.; Manning, A. C.; Deffit, S. N.; Washburn, M. C.; Wheeler, E. C.; Yeo, G. W.; Ben-Naim Zgayer, O.; Mantsur, E.; Hundley, H. A.; Lamm, A. T.

10.1101/273433 — genomics — Posted on 2018-10-20

1105 A Model for Time Interval Learning in The Purkinje Cell

Majoral, D.; Zemmar, A.; Vicente, R.

10.1101/448027 — neuroscience — Posted on 2018-10-20

1106 Brian2GeNN: a system for accelerating alarge variety of spiking neural networkswith graphics hardware

Stimberg, M.; Goodman, D. F. M.; Nowotny, T.

10.1101/448050 — neuroscience — Posted on 2018-10-20

1107 Statistical Considerations in the Design and Analysis of Longitudinal Microbiome Studies

Silverman, J. D.; Shenhav, L.; Halperin, E. A.; Mukherjee, S. A.; David, L. A.

10.1101/448332 — microbiology — Posted on 2018-10-20

1108 Transduction of the Geomagnetic Field as Evidenced from Alpha-band Activity in the Human Brain

Wang, C. X.; Hilburn, I. A.; Wu, D.-A.; Mizuhara, Y.; Couste, C. P.; Abrams, J. N. H.; Bernstein, S. E.; Matani, A.; Shimojo, S.; Kirschvink, J. L.

10.1101/448449 — biophysics — Posted on 2018-10-20

1109 Dynamic constraints on activity and connectivity during the learning of value

Adebimpe, A.; Bertolero, M.; Khambhati, A. N.; Mattar, M. G.; Romer, D.; Thompson-Schill, S. L.; Bassett, D. S.

10.1101/448464 — neuroscience — Posted on 2018-10-20

1110 Enhanced plasticity of programmed DNA elimination boosts adaptive potential in suboptimal environments

Vitali, V.; Hagen, R.; Catania, F.

10.1101/448316 — evolutionary biology — Posted on 2018-10-20

1111 Comprehensive human cell-type methylation atlas reveals origins of circulating cell-free DNA in health and disease

Moss, J.; Magenheim, J.; Neiman, D.; Zemmour, H.; Loyfer, N.; Korach, A.; Samet, Y.; Maoz, M.; Druid, H.; Arner, P.; Fu, K.-Y.; Kiss, E.; Spalding, K. L.; Landesberg, G.; Zick, A.; Grinshpun, A.; Shapiro, A. J.; Grompe, M.; Dreazan Wittenberg, A.; Glaser, B.; Shemer, R.; Kaplan, T.; Dor, Y.

10.1101/448142 — molecular biology — Posted on 2018-10-20

1112 Intracellular Burkholderia Symbionts Induce Extracellular Secondary Infections; Driving Diverse Host Outcomes that Vary by Genotype and Environment

Khojandi, N.; Haselkorn, T. S.; Eschbach, M. N.; Naser, R. A.; DiSalvo, S.

10.1101/448399 — microbiology — Posted on 2018-10-20

1113 Effect of fire and thinning on fine-scale genetic structure and gene flow in fire-suppressed populations of sugar pine (Pinus lambertiana Douglas)

Lind, B. M.; North, M. P.; Maloney, P. E.; Eckert, A. J.

10.1101/448522 — ecology — Posted on 2018-10-20

1114 Regrowth-delay Body as a Bacterial Subcellular Structure marking multidrug tolerant Persisters

Chang, Z.; Yu, J.; Liu, Y.; Yin, H.

10.1101/448092 — microbiology — Posted on 2018-10-20

1115 IDH1 and IDH2 mutants identified in cancer lose inhibition by isocitrate because of a change in their binding sites

Bascur, J. P.; Alegria-Arcos, M.; Araya-Duran, I.; Juritz, E. I.; Gonzalez-Nilo, F. D.; Almonacid, D. E.

10.1101/425025 — bioinformatics — Posted on 2018-10-20

1116 Coping with strangers: how familiarity and active interactions shape group coordination in Corydoras aeneus

Riley, R. J.; Gillie, E. R.; Johnstone, R. A.; Boogert, N. J.; Manica, A.

10.1101/448068 — animal behavior and cognition — Posted on 2018-10-20

1117 Encapsulated mononuclear stem cells: paracrine action for the treatment of acute myocardial infarction

Tobar, S.; Andrades, M.; Olsen, V.; Silvello, D.; Phaelante, A.; Lopes, A.; Biolo, A.; Matte, U.; Rohde, L. E.; Clausell, N.

10.1101/448415 — pathology — Posted on 2018-10-20

1118 Reciprocal carbon subsidies between autotrophs and bacteria in stream food webs under stoichiometric constraints

Demars, B.; Friberg, N.; Kemp, J.; Thornton, B.

10.1101/447987 — ecology — Posted on 2018-10-20

1119 Macromolecular organization of the pyoverdine biosynthetic pathway in Pseudomonas aeruginosa.

Gasser, V.; Malrieu, M.; Forster, A.; Mely, Y.; Schalk, I. J.; Godet, J.

10.1101/438713 — biophysics — Posted on 2018-10-20

1120 Visual control of landing maneuvers in houseflies on vertical and inverted surfaces

Sane, S. P.; Balebail, S.; Raja, S. K.

10.1101/448472 — animal behavior and cognition — Posted on 2018-10-20

1121 DPPA2 and DPPA4 are necessary to establish a totipotent state in mouse embryonic stem cells

De Iaco, A.; Coudray, A.; Duc, J.; Trono, D.

10.1101/447755 — developmental biology — Posted on 2018-10-19

1122 Loss of the Heparan Sulfate Proteoglycan Glypican5 facilitates long range Shh signaling.

Guo, W.; Roelink, H.

10.1101/448621 — cell biology — Posted on 2018-10-19

1123 Old fibroblasts secrete inflammatory cytokines that drive variability in reprogramming efficiency and may affect wound healing between old individuals

Mahmoudi, S.; Mancini, E.; Moore, A.; Xu, L.; Jahanbani, F.; Hebestreit, K.; Srinivasan, R.; Li, X.; Devarajan, K.; Prelot, L.; Ang, C. E.; Shibuya, Y.; Benayoun, B. A.; Chang, A. L. S.; Wernig, M.; Wysocka, J.; Longaker, M. T.; Snyder, M. P.; Brunet, A.

10.1101/448431 — cell biology — Posted on 2018-10-19

1124 Multiple polyvalency provided by intrinsically disordered segments is a key feature of postsynaptic scaffold proteins

Kiss-Toth, A.; Peterfia, B.; Angyan, A. F.; Ligeti, B.; Lukacs, G.; Gaspari, Z.

10.1101/448100 — bioinformatics — Posted on 2018-10-19

1125 A cell-based probabilistic approach unveils the concerted action of miRNAs

Mahlab-Aviv, S.; Linial, N.; Linial, M.

10.1101/298596 — systems biology — Posted on 2018-10-19

1126 On the unfounded enthusiasm for soft selective sweeps II: examining recent evidence from humans, flies, and viruses

Harris, R.; Sackman, A.; Jensen, J. D.

10.1101/443051 — evolutionary biology — Posted on 2018-10-19

1127 The RNA-binding protein AATF coordinates rRNA maturation

Kaiser, R.; Ignarski, M.; Van Nostrand, E. L.; Frese, C.; Jain, M.; Cukoski, S.; Heinen, H.; Schaechter, M.; Bunte, K.; Frommolt, P.; Keller, P.; Helm, M.; Bohl, K.; Höhne, M.; Schermer, B.; Benzing, T.; Höpker, K.; Dieterich, C.; Yeo, G. W.; Mueller, R.-U.; Fabretti, F.

10.1101/446260 — molecular biology — Posted on 2018-10-19

1128 Setting Starting Level for a Trial of a Biofilm-Disrupting Adjuvant

Lodder, R. A.; Adams, B.

10.1101/447607 — pharmacology and toxicology — Posted on 2018-10-19

1129 The molecular genetics of hand preference revisited

de Kovel, C. G. F.; Francks, C.

10.1101/447177 — genetics — Posted on 2018-10-19

1130 Multi-Method Molecular Characterisation of Human Dust-Mite-associated Allergic Asthma

Whittle, E.; Leonard, M.; Gant, T.; Tonge, D.

10.1101/446427 — molecular biology — Posted on 2018-10-19

1131 Genomic insights into metabolism and phylogeography of the mesophilic Thermotogae genus Mesotoga

Nesbo, C. L.; Charchuk, R.; Pollo, S. M. J.; Budwill, K.; Kublanov, I.; Haverkamp, T. H. A.; Foght, J.

10.1101/322537 — evolutionary biology — Posted on 2018-10-19

1132 Selene: a PyTorch-based deep learning library for sequence-level data

Chen, K. M.; Cofer, E. M.; Zhou, J.; Troyanskaya, O. G.

10.1101/438291 — bioinformatics — Posted on 2018-10-19

1133 Identification and characterization of genes found in Coccidioides spp. but not nonpathogenic Onygenales

Kirkland, T. N.

10.1101/413906 — microbiology — Posted on 2018-10-19

1134 From the cage to the wild: Introductions of Psittaciformes to Puerto Rico

Falcon, W.; Tremblay, R. L.

10.1101/437293 — ecology — Posted on 2018-10-19

1135 A flexible and generalizable model of online latent-state learning

Cochran, A. L.; Cisler, J. M.

10.1101/443234 — neuroscience — Posted on 2018-10-19

1136 The Landscape of Parkin Variants Reveals Pathogenic Mechanisms and Therapeutic Targets in PD

Yi, W.; MacDougall, E. J.; Tang, M.; Roldan, A. K.; Gan-Or, Z.; Trempe, J.-F.; Fon, E. A.

10.1101/445551 — neuroscience — Posted on 2018-10-19

1137 Macroevolutionary diversification rates show time-dependency

Henao Diaz, L. F.; Harmon, L. J.; Sugawara, M. T. C.; Miller, E. I.; Pennell, M. W.

10.1101/396598 — evolutionary biology — Posted on 2018-10-19

1138 Tip rates, phylogenies and diversification: what are we estimating, and how good are the estimates?

Title, P. O.; Rabosky, D.

10.1101/369124 — evolutionary biology — Posted on 2018-10-19

1139 Barnaba: Software for Analysis of Nucleic Acids Structures and Trajectories

Bottaro, S.; Bussi, G.; Pinamonti, G.; Reisser, S.; Boomsma, W.; Lindorff-Larsen, K.

10.1101/345678 — bioinformatics — Posted on 2018-10-19

1140 Increased cognitive complexity reveals abnormal brain network activity in individuals with corpus callosum dysgenesis

Hearne, L. J.; Dean, R. J.; Robinson, G. A.; Richards, L. J.; Mattingley, J. B.; Cocchi, L.

10.1101/312629 — neuroscience — Posted on 2018-10-19

1141 Causal Effects of Blood Lipids on Amyotrophic Lateral Sclerosis: A Mendelian Randomization Study

Zeng, P.; Zhou, X.

10.1101/447581 — epidemiology — Posted on 2018-10-19

1142 Evaluation of the NCCN guidelines using the RIGHT Statement and AGREE II instrument: a cross-sectional review.

Wayant, C.; Cooper, C.; Turner, D.; Vassar, M.

10.1101/442285 — epidemiology — Posted on 2018-10-19

1143 Genomic and transcriptomic determinants of therapy resistance and immune landscape evolution during anti-EGFR treatment in colorectal cancer

Woolston, A.; Khan, K.; Spain, G.; Barber, L. J.; Griffiths, B.; Gonzalez Exposito, R.; Patil, Y.; Mansukhani, S.; Davies, M. N.; Furness, A.; Sclafani, F.; Peckitt, C.; Kouvelakis, K.; Ranftl, R.; Begum, R.; Rana, I.; Thomas, J.; Bryant, A.; Quezada, S.; Wotherspoon, A.; Khan, N.; Fotiadis, N.; Marafioti, T.; Powles, T.; Calvo, F.; Guettler, S.; von Loga, K.; Rao, S.; Watkins, D.; Starling, N.; Chau, I.; Sadanandam, A.; Cunningham, D.; Gerlinger, M.

10.1101/448076 — cancer biology — Posted on 2018-10-19

1144 Rapid statistical methods for inferring intra- and inter-hospital transmission of nosocomial pathogens from whole genome sequence data

Aspbury, M.; Sciberas, J.; Corander, J.; Bayliss, S.; Donker, T.; Feil, E.; James, R.

10.1101/442319 — epidemiology — Posted on 2018-10-19

1145 MR-pheWAS with stratification and interaction: Searching for the causal effects of smoking heaviness identified an effect on facial aging

Millard, L. A.; Munafo, M. R.; Tilling, K.; Wootton, R. E.; Davey Smith, G.

10.1101/441907 — epidemiology — Posted on 2018-10-19

1146 Imaging Striatal Dopamine Release Using a Non-Genetically Encoded Near-Infrared Fluorescent Catecholamine Nanosensor

Beyene, A. G.; Delevich, K.; Del Bonis ODonnell, J. T.; Piekarski, D. J.; Lin, W. C.; Thomas, A. W.; Yang, S. J.; Kosillo, P.; Yang, D.; Wilbrecht, L.; Landry, M. P.

10.1101/356543 — neuroscience — Posted on 2018-10-19

1147 Multi-Method Characterisation of the Human Circulating Microbiome

Whittle, E.; Leonard, M. O.; Harrison, R. D.; Gant, T. W.; Tonge, D. P.

10.1101/359760 — molecular biology — Posted on 2018-10-19

1148 Comparative validation of breast cancer risk prediction models and projections for future risk stratification

Pal Choudhury, P.; Wilcox, A.; Brook, M.; Zhang, Y.; Ahearn, T.; Orr, N.; Coulson, P.; Schoemaker, M. J.; Jones, M. E.; Gail, M. H.; Swerdlow, A. J.; Chatterjee, N.; Garcia-Closas, M.

10.1101/440347 — epidemiology — Posted on 2018-10-19

1149 A harmonized meta-knowledgebase of clinical interpretations of cancer genomic variants

Wagner, A. H.; Walsh, B.; Mayfield, G.; Tamborero, D.; Sonkin, D.; Krysiak, K.; Deu Pons, J.; Duren, R.; Gao, J.; McMurry, J.; Patterson, S.; Del Vecchio Fitz, C.; Sezerman, O. U.; Warner, J. L.; Rieke, D. T.; Aittokallio, T.; Cerami, E.; Ritter, D.; Schriml, L. M.; Freimuth, R. R.; Haendel, M.; Raca, G.; Madhavan, S.; Baudis, M.; Beckmann, J. S.; Dienstmann, R.; Chakravarty, D.; Li, X. S.; Mockus, S.; Elemento, O.; Schultz, N.; Lopez-Bigas, N.; Lawler, M.; Goecks, J.; Griffith, M.; Griffith, O. L.; Margolin, A.; Variant Interpretation for Cancer Consortium,

10.1101/366856 — bioinformatics — Posted on 2018-10-19

1150 Basal forebrain GABAergic innervation of olfactory bulb periglomerular interneurons

Sanz Diez, A.; Najac, M.; De Saint Jan, D.

10.1101/216259 — neuroscience — Posted on 2018-10-19

1151 Postmarketing commitments for novel drugs and biologics approved by the US Food and Drug Administration: a cross-sectional analysis

Wallach, J. D.; Luxkaranayagam, A. T.; Dhruva, S. S.; Miller, J. E.; Ross, J. S.

10.1101/447185 — epidemiology — Posted on 2018-10-19

1152 Deleterious mutation accumulation in Arabidopsis thaliana pollen genes: a role for a recent relaxation of selection

Harrison, M. C.; Mallon, E. B.; Twell, D.; Hammond, R. L.

10.1101/016626 — evolutionary biology — Posted on 2018-10-19

1153 SimpactCyan 1.0: An Open-source Simulator for Individual-Based Models in HIV Epidemiology with R and Python Interfaces

Liesenborgs, J.; Hendrickx, D. M.; Kuylen, E.; Niyukuri, D.; Hens, N.; Delva, W.

10.1101/440834 — epidemiology — Posted on 2018-10-19

1154 Sampling for disease absence-deriving informed monitoring from epidemic traits

Bourhis, Y.; Gottwald, T. R.; Lopez-Ruiz, F. J.; Patarapuwadol, S.; van den Bosch, F.

10.1101/443895 — epidemiology — Posted on 2018-10-19

1155 Causal Association between Birth Weight and Adult Diseases: Evidence from a Mendelian Randomisation Analysis

Zeng, P.; Zhou, X.

10.1101/447573 — epidemiology — Posted on 2018-10-19

1156 Associations between environmental breast cancer risk factors and DNA methylation-based risk-predicting measures

Chen, M.; Wong, E. M.; Nguyen, T. L.; Dite, G. S.; Stone, J.; Giles, G. G.; Southey, M. C.; Hopper, J. L.; Li, S.

10.1101/446484 — epidemiology — Posted on 2018-10-19

1157 Tissue morphogenesis mediated by the Arabidopsis receptor kinase STRUBBELIG involves a clathrin-dependent process

Gao, J.; Chaudhary, A.; Vaddepalli, P.; Nagel, M.-K.; Isono, E.; Schneitz, K.

10.1101/448084 — plant biology — Posted on 2018-10-19

1158 A Mathematical Model Relating Pitocin Use During Labor with Offspring Autism Development in Terms of Oxytocin Receptor Desensitization in the Fetal Brain

Gottlieb, M.

10.1101/446997 — neuroscience — Posted on 2018-10-19

1159 Differential induction of interferon stimulated genes between type I and type III interferons is independent of interferon receptor abundance

Pervolaraki, K.; Rastgou Talemi, S.; Albrecht, D.; Bormann, F.; Bamford, C.; Mendoza, J.; Garcia, K. C.; McLauchlan, J.; Höfer, T.; Stanifer, M. L.; Boulant, S.

10.1101/448357 — immunology — Posted on 2018-10-19

1160 Chlamydia muridarum infection differentially changes smooth muscle contractility and responses to prostaglandins in uterus and cervix

Lee, J. M.; Mayall, J. R.; Chevalier, A.; Van Helden, D.; Horvat, J. C.; Hansbro, P. M.; Jobling, P.

10.1101/448340 — physiology — Posted on 2018-10-19

1161 Selective advantages favour high genomic AT-contents in intracellular elements

Dietel, A.-K.; Merker, H.; Kaltenpoth, M.; Kost, C.

10.1101/448324 — evolutionary biology — Posted on 2018-10-19

1162 Predicting the effects of deep brain stimulation using a reduced coupled oscillator model

Weerasinghe, G.; Duchet, B.; Cagnan, H.; Brown, P.; Bick, C.; Bogacz, R.

10.1101/448290 — neuroscience — Posted on 2018-10-19

1163 Translation factor mRNA granules direct protein synthetic capacity to regions of polarized growth

Pizzinga, M.; Bates, C.; Lui, J.; Forte, G.; Morales-Polanco, F.; Linney, E.; Knotkova, B.; Wilson, B.; Solari, C. A.; Berchowitz, L. E.; Portela, P.; Ashe, M. P.

10.1101/447680 — cell biology — Posted on 2018-10-19

1164 The outer membrane proteins OmpA, FhuA, OmpF, EstA, BtuB and OmpX have unique lipopolysaccharide fingerprints.

Shearer, J.; Jefferies, D.; Khalid, S.

10.1101/448274 — biophysics — Posted on 2018-10-19

1165 A tool for analyzing electrode tracks from slice histology

Shamash, P.; Carandini, M.; Harris, K. D.; Steinmetz, N. A.

10.1101/447995 — neuroscience — Posted on 2018-10-19

1166 Collective radioresistance of T47D breast carcinoma cells is mediated by a Syncytin-1 homologous protein

Chignola, R.; Sega, M.; Molesini, B.; Baruzzi, A.; Stella, S.; Milotti, E.

10.1101/448217 — cancer biology — Posted on 2018-10-19

1167 Whole blood and hypertonic saline resuscitation improve the outcomes of controlled hemorrhagic shock combined with penetrating brain injury in rat

Weissmann, M.; Dar, D.; Krausz, M.

10.1101/448266 — physiology — Posted on 2018-10-19

1168 Deep Convolutional modeling of human face selective columns reveals their role in pictorial face representation

Grossman, S.; Gaziv, G.; Yeagle, E. M.; Harel, M.; Megevand, P.; Groppe, D. M.; Khuvis, S.; Herrero, J. L.; Irani, M.; Mehta, A. D.; Malach, R.

10.1101/444323 — neuroscience — Posted on 2018-10-19

1169 Hexokinase and glucokinases are essential for fitness and virulence in the pathogenic yeast Candida albicans

Laurian, R.; Dementhon, K.; Doumeche, B.; Soulard, A.; Noel, T.; Lemaire, M.; Cotton, P.

10.1101/448373 — microbiology — Posted on 2018-10-19

1170 Microbial predator-prey interactions could favor coincidental selection of diverse virulence factors in marine coastal waters.

Robino, E.; Poirier, A. C.; Lopez-Joven, C.; Auguet, J.-C.; Rubio, T. P.; Cazevieille, C.; Rolland, J.-L.; Hechard, Y.; Destoumieux-Garzon, D.; Charriere, G.

10.1101/439018 — microbiology — Posted on 2018-10-19

1171 Benefit-cost analysis of the policy of mandatory annual rabies vaccination of domestic dogs in rabies-free Japan

Kwan, N. C. L.; Yamada, A.; Sugiura, K.

10.1101/448258 — epidemiology — Posted on 2018-10-19

1172 Stressed mothers, tolerant daughters: a case study about the physiological responses and growth of sugarcane plants under water deficit

Marcos, F.; Silveira, N.; Marchiori, P.; Machado, E.; Souza, G.; Landell, M.; Ribeiro, R.

10.1101/448241 — plant biology — Posted on 2018-10-19

1173 Evaluation of the causal effect of fibrinogen on incident coronary heart disease via Mendelian randomization

Ward-Caviness, C. K.; de Vries, P. S.; Wiggins, K. L.; Huffman, J. E.; Yanek, L. R.; Bielak, L. F.; Giulianini, F.; Guo, X.; Kleber, M. E.; Kacprowski, T.; Gross, S.; Petersman, A.; Davey Smith, G.; Hartwig, F. P.; Bowden, J.; Hemani, G.; Muller-Nuraysid, M.; Strauch, K.; Koenig, W.; Waldenberger, M.; Meitinger, T.; Pankratz, N.; Boerwinkle, E.; Tang, W.; Fu, Y.-P.; Johnson, A. D.; Song, C.; de Maat, M. P.; Uitterlinden, A. G.; Franco, O. H.; Brody, J. A.; McKnight, B.; Chen, Y.-D. I.; Psaty, B. M.; Mathias, R. A.; Becker, D. M.; Peyser, P. A.; Smith, J. A.; Bielinski, S. J.; Ridker, P. M.; Ta

10.1101/448381 — genetics — Posted on 2018-10-19

1174 On the prevalence of uninformative parameters in statistical models applying model selection in applied ecology

Leroux, S.

10.1101/448191 — ecology — Posted on 2018-10-19

1175 Wolbachia endosymbionts subvert the endoplasmic reticulum to acquire host membranes without triggering ER stress

Fattouh, N.; Cazevieille, C.; Landmann, F.

10.1101/448365 — cell biology — Posted on 2018-10-19

1176 Determination of biophysical parameters for enhancement of human osteoblast proliferation by mechanical vibration in the infrasonic frequency range

Rosenberg, N.; Halevi Politch, J.; Rosenberg, O.; Abramovich, H.

10.1101/448225 — cell biology — Posted on 2018-10-19

1177 Computational modeling reveals dynamics of brain metastasis in non-small cell lung cancer and provides a tool for personalized therapy

Bilous, M.; Serdjebi, C.; Boyer, A.; Tomasini, P.; Pouypoudat, C.; Barbolosi, D.; Barlesi, F.; Chomy, F.; Benzekry, S.

10.1101/448282 — cancer biology — Posted on 2018-10-19

1178 BET inhibition induces HEXIM1- and RAD51-dependent conflicts between transcription and replication

Bowry, A.; Piberger, A. L.; Petermann, E.

10.1101/374660 — molecular biology — Posted on 2018-10-19

1179 Analysis of an HIV model with post-treatment control

Wang, S.; Xu, F.

10.1101/448308 — immunology — Posted on 2018-10-19

1180 Electron microscopic analysis of the exo-skeleton of hadal zone amphipod Hirondellea gigas

Kobayashi, H.; Shimoshige, H.; Nakajima, Y.; Arai, W.; Katami, H.

10.1101/448175 — zoology — Posted on 2018-10-19

1181 Heat Shock in C. elegans Induces Downstream of Gene Transcription and Accumulation of Double-Stranded RNA

melnick, m.; Gonzales, P.; Cabral, J.; Allen, M. A.; Dowell, R. D.; Link, C. D.

10.1101/448233 — molecular biology — Posted on 2018-10-19

1182 The First Implication of Image Processing Techniques on Influenza A Virus Sub-Typing Based on HA/NA Protein Sequences, using Convolutional Deep Neural Network

Ebrahimi, M.; Ahsan, R.

10.1101/448159 — bioinformatics — Posted on 2018-10-19

1183 Antibiotic resistance is lower in Staphylococcus aureus isolated from antibiotic-free raw meat as compared to conventional raw meat

Haskell, K. J.; Schriever, S. R.; Fonoimoana, K. D.; Haws, B.; Hair, B. B.; Wienclaw, T. M.; Holmstead, J. G.; Barboza, A. B.; Berges, E. T.; Heaton, M. J.; Berges, B. K.

10.1101/448209 — microbiology — Posted on 2018-10-19

1184 Bridging the divide: bacteria synthesizing archaeal membrane lipids

Villanueva, L.; von Meijenfeldt, F. A. B.; Westbye, A. B.; Hopmans, E. C.; Dutilh, B. E.; Sinninghe Damste, J. S.

10.1101/448035 — evolutionary biology — Posted on 2018-10-19

1185 The three dimensional structure of Bovine Salivary Protein 30b (BSP30b) and its interaction with specific rumen bacteria

Zhang, H.; Burrows, J.; Card, G.; Attwood, G.; Wheeler, T.; Arcus, V.

10.1101/448167 — biochemistry — Posted on 2018-10-19

1186 Comparative analysis of Streptococcus genomes

Shelyakin, P. V.; Bochkareva, O.; Karan, A. A.; Gelfand, M. S.

10.1101/447938 — genomics — Posted on 2018-10-19

1187 Is Polygenic Risk Scores Prediction Good?

Zhao, B.; Zou, F.

10.1101/447797 — genetics — Posted on 2018-10-19

1188 A Systematic Approach to Identify Recycling Endocytic Cargo Depending on the GARP Complex

Fröhlich, F.; Eising, S.; Thiele, L.

10.1101/447920 — cell biology — Posted on 2018-10-19

1189 Computational Analysis of Single Nucleotide polymorphisms (SNPs) in Human T-Cell Acute Lymphocytic Leukemia Protein 1 (TAL1) Gene/ Comprehensive Study

Shantier, S. W.; Elmansi, H. E.; Elnnewery, M. E.; Osman, H. K.; Osman, I.-A. A.; Abdelrhman, F. A.; Yagaub, A. A.; Yousif, E. M.; Abdalla, A. I.; Elamin, R. A.; Fadol, H. S.; FadlAlla, A. A.; Hassan, M. A.

10.1101/447540 — bioinformatics — Posted on 2018-10-19

1190 BET inhibition induces HEXIM1- and RAD51-dependent conflicts between transcription and replication

Bowry, A.; Piberger, A. L.; Rojas, P.; Saponaro, M.; Petermann, E.

10.1101/374660 — molecular biology — Posted on 2018-10-19

1191 Alternative interaction sites in the influenza A virus nucleoprotein mediate viral escape from the importin-α7 mediated nuclear import pathway

Resa-Infante, P.; Bonet, J.; Thiele, S.; Alawi, M.; Oliva, B.; Gabriel, G.

10.1101/447979 — molecular biology — Posted on 2018-10-19

1192 The molecular genetics of hand preference revisited

de Kovel, C. G. F.; Francks, C.

10.1101/447177 — genetics — Posted on 2018-10-19

1193 Assessing the response of small RNA populations to allopolyploidy using resynthesized Brassica napus allotetraploids

Martinez Palacios, P.; Jacquemot, M.-P.; Tapie, M.; Rousselet, A.; Diop, M.; Remoue, C.; Falque, M.; Lloyd, A.; Jenczewski, E.; Lassalle, G.; Chevre, A.-M.; Lelandais, C.; Crespi, M.; Brabant, P.; Joets, J.; Alix, K.

10.1101/441022 — evolutionary biology — Posted on 2018-10-19

1194 The biggest losers: Habitat isolation deconstructs complex food webs from top to bottom

Häussler, J.; Ryser, R.; Stark, M.; Brose, U.; Rall, B.; Guill, C.

10.1101/439190 — ecology — Posted on 2018-10-19

1195 PBiochemical and physiological investigations on adenosine 5’ monophosphate deaminase from Plasmodium spp

Nagappa, L. K.; Balaram, H.

10.1101/447789 — biochemistry — Posted on 2018-10-19

1196 MEK/mTOR-dependent D1 dopamine receptor activation induces local protein synthesis via eEF2 dephosphorylation in neurons

David, O.; Barrera, I.; Koltun, B.; Ironi, S.; Gal-Ben-Ari, S.; Rosenblum, K.

10.1101/447714 — neuroscience — Posted on 2018-10-19

1197 Jackknife model averaging prediction methods for complex phenotypes with gene expression levels by integrating external pathway information

Yu, X.; Xiao, L.; Zeng, P.; Huang, S.

10.1101/447706 — genomics — Posted on 2018-10-19

1198 Unraveling the polygenic architecture of complex traits using blood eQTL meta-analysis

Vosa, U.; Claringbould, A.; Westra, H.-J.; Bonder, M. J.; Deelen, P.; Zeng, B.; Kirsten, H.; Saha, A.; Kreuzhuber, R.; Kasela, S.; Pervjakova, N.; Alvaes, I.; Fave, M.-J.; Agbessi, M.; Christiansen, M.; Jansen, R.; Seppälä, I.; Tong, L.; Teumer, A.; Schramm, K.; Hemani, G.; Verlouw, J.; Yaghootkar, H.; Sönmez, R.; Andrew, A. A.; Kukushkina, V.; Kalnapenkis, A.; Rüeger, S.; Porcu, E.; Kronberg-Guzman, J.; Kettunen, J.; Powell, J.; Lee, B.; Zhang, F.; Arindrarto, W.; Beutner, F.; BIOS Consortium, ; Brugge, H.; i2QTL Consortium, ; Dmitrieva, J.; Elansary, M.; Fairfax, B. P.; Georges, M.; He

10.1101/447367 — genomics — Posted on 2018-10-19

1199 scFTD-seq: freeze-thaw lysis based, portable approach toward high-quality distributed single-cell 3’ mRNA profiling

Dura, B.; Choi, J.-Y.; Zhang, K.; Damsky, W.; Thakral, D.; Bosenberg, M.; Craft, J.; Fan, R.

10.1101/447524 — bioengineering — Posted on 2018-10-19

1200 Pupillary dilations of mice performing a vibrotactile discrimination task reflect task engagement and response confidence.

Ganea, D. A.; Bexter, A.; Guenther, M.; Garderes, P. M.; Kampa, B. M.; Haiss, F.

10.1101/444919 — neuroscience — Posted on 2018-10-19

1201 Variation and inheritance of the Xanthomonas gene cluster required for activation of XA21-mediated immunity

Liu, F.; McDonald, M.; Schwessinger, B.; Joe, A.; Pruitt, R.; Erickson, T.; Zhao, X.; Stewart, V.; Ronald, P.

10.1101/149930 — microbiology — Posted on 2018-10-19

1202 Somatic mutability in cancer predicts the phenotypic relevance of germline mutations

Provero, P.; Lazarevic, D.; Cittaro, D.

10.1101/447862 — genomics — Posted on 2018-10-19

1203 The role of maternal pioneer factors in predefining first zygotic responses to inductive signals

Gentsch, G. E.; Spruce, T.; Owens, N. D. L.; Smith, J. C.

10.1101/306803 — developmental biology — Posted on 2018-10-19

1204 Side chain to main chain hydrogen bonds stabilize polyglutamine helices in transcription factors

Escobedo, A.; Topal, B.; Kunze, M. B. A.; Aranda, J.; Chiesa, G.; Mungianu, D.; Bernardo-Seisedos, G.; Eftekharzadeh, B.; Gairi, M.; Pieratelli, R.; Felli, I.; Diercks, T.; Millet, O.; Garcia, J.; Orozco, M.; Crehuet, R.; Lindorff-Larsen, K.; Salvatella, X.

10.1101/447896 — biophysics — Posted on 2018-10-19

1205 Value representations do not explain movement selectivity in DMS-projecting dopamine neurons

Lee, R. S.; Mattar, M. G.; Parker, N. F.; Witten, I. B.; Daw, N. D.

10.1101/447532 — neuroscience — Posted on 2018-10-19

1206 HiAlc Klebsiella pneumonia, one of potential chief culprits of non-alcoholic fatty liver disease: through generation of endogenous ethanol

Wei, X.; Zhao, X.; Chen, C.; Lu, J.; Cheng, W.; Li, B.; Li, H.; Lin, W.; Tian, C.; An, D.; Han, J.; Ma, X.; Li, W.; Wang, X.; Chen, X.; Zhao, J.; Zhang, Z.; Zeng, H.; Sun, Y.; Liu, D.; Yang, R.; Yuan, J.

10.1101/446765 — microbiology — Posted on 2018-10-19

1207 Testing the Regulatory Consequences of 1,049 Schizophrenia Associated Variants With a Massively Parallel Reporter Assay

Myint, L.; Wang, R.; Boukas, L.; Hansen, K. D.; Goff, L. A.; Avramopoulos, D.

10.1101/447557 — genetics — Posted on 2018-10-19

1208 Multiple loci of small effect confer wide variability in efficiency and resistance rate of CRISPR gene drive

Champer, J.; Wen, Z.; Luthra, A.; Reeves, R.; Chung, J.; Liu, C.; Lee, Y. L.; Liu, J.; Yang, E.; Messer, P. W.; Clark, A. G.

10.1101/447615 — genetics — Posted on 2018-10-19

1209 Managing river fish biodiversity generates substantial economic benefits in four European countries

Riepe, C.; Meyerhoff, J.; Fujitani, M.; Aas, O.; Radinger, J.; Kochalski, S.; Arlinghaus, R.

10.1101/447300 — ecology — Posted on 2018-10-19

1210 Massively scalable genetic analysis of antibody repertoires

Briney, B.; Burton, D.

10.1101/447813 — bioinformatics — Posted on 2018-10-19

1211 Setting Starting Level for a Trial of an Biofilm-Disrupting Adjuvant

Lodder, R. A.; Adams, B.

10.1101/447607 — pharmacology and toxicology — Posted on 2018-10-19

1212 Phasic arousal optimizes decision computations in mice and humans

de Gee, J. W.; Tsetsos, K.; McCormick, D. A.; McGinley, M. J.; Donner, T. H.

10.1101/447656 — neuroscience — Posted on 2018-10-19

1213 Correlation between the epigenetic modification of histone H3K9 acetylation of NR2B gene promoter in rat hippocampus and ethanol withdrawal syndrome

Li, D.; Zhang, Y.; Zhang, Y.; Wang, Q.; Miao, Q.; Xu, Y.; Soares, J. C.; Zhang, X.; zhang, r.

10.1101/447771 — neuroscience — Posted on 2018-10-19

1214 Transposon accumulation lines uncover histone H2A.Z-driven integration bias towards environmentally responsive genes

Quadrana, L.; Etcheverry, M.; Gilly, A.; Caillieux, E.; Madoui, M.-A.; Julie, J.; Bortolini Silveira, A.; Engelen, S.; Baillet, V.; Wincker, P.; Aury, J.-M.; Colot, V.

10.1101/447870 — genomics — Posted on 2018-10-19

1215 Genomic architecture of parallel ecological divergence: beyond a single environmental contrast

Morales, H. E.; Faria, R.; Johannesson, K.; Larsson, T.; Panova, M.; Westram, A. M.; Butlin, R.

10.1101/447854 — evolutionary biology — Posted on 2018-10-19

1216 Characteristic Localization of Neuronatin in Rat Tissues

Kanno, N.; Yoshida, S.; Kato, T.; Kato, Y.

10.1101/447169 — developmental biology — Posted on 2018-10-19

1217 Molecularly distinct models of zebrafish Myc-induced B cell leukemia

Borga, C.; Foster, C.; Iyer, S.; Garcia, S.; Langenau, D.; Frazer, K. J.

10.1101/446245 — cancer biology — Posted on 2018-10-19

1218 LuxRep: a technical replicate-aware method for bisulfite sequencing data analysis

Malonzo, M. A. H.; Halla-Aho, V.; Konki, M.; Lund, R.; Lähdesmäki, H.

10.1101/444711 — bioinformatics — Posted on 2018-10-19

1219 scFTD-seq: freeze-thaw lysis based, portable approach toward high-quality distributed single-cell 3 mRNA profiling

Dura, B.; Choi, J.-Y.; Zhang, K.; Damsky, W.; Thakral, D.; Bosenberg, M.; Craft, J.; Fan, R.

10.1101/447524 — bioengineering — Posted on 2018-10-19

1220 The structural basis of lipid scrambling and inactivation in the endoplasmic reticulum scramblase TMEM16K

Bushell, S. R.; Pike, A. C. W.; Falzone, M. E.; Rorsman, N. J. G.; Ta, C. M.; Corey, R. A.; Newport, T. D.; Shintre, C. A.; Tessitore, A.; Chu, A.; Wang, Q.; Shrestha, L.; Mukhopadhyay, S.; Love, J. D.; Burgess-Brown, N. A.; Sitsapesan, R.; Stansfeld, P. J.; Huiskonen, J. T.; Tommaro, P.; Accardi, A.; Carpenter, E. P.

10.1101/447417 — biochemistry — Posted on 2018-10-19

1221 Naked mole rat hyaluronan - an extreme folding biopolymer

Kulaberoglu, Y.; Bhushan, B.; Hadi, F.; Khaled, W.; Rankin, K.; St. John Smith, E.; Frankel, D.

10.1101/447631 — biophysics — Posted on 2018-10-18

1222 Learning causal biological networks with the principle of Mendelian randomization

Badsha, M. B.; Fu, A. Q.

10.1101/171348 — bioinformatics — Posted on 2018-10-18

1223 Nanopore formation in the cuticle of the insect olfactory sensillum

Ando, T.; Sekine, S.; Inagaki, S.; Misaki, K.; Badel, L.; Moriya, H.; Mustafa, S. M.; Chihara, T.; Kazama, H.; Yonemura, S.; Hayashi, S.

10.1101/444729 — developmental biology — Posted on 2018-10-18

1224 Why panmictic bacteria are rare

Yang, C.; Cui, Y.; Didelot, X.; Yang, R.; Falush, D.

10.1101/385336 — microbiology — Posted on 2018-10-18

1225 Field evidence for manipulation of mosquito host selection by the human malaria parasite, Plasmodium falciparum

Vantaux, A.; Yao, F.; Hien, D. F.; Guissou, E.; Yameogo, B. K.; Gouagna, L.-C.; Fontenille, D.; Renaud, F.; Simard, F.; Constantini, C.; Thomas, F.; Mouline, K.; Roche, B.; Cohuet, A.; Dabire, K. R.; Lefevre, T.

10.1101/207183 — evolutionary biology — Posted on 2018-10-18

1226 Modular mathematical analysis of the control of flagellar Ca2+-spike trains produced by CatSper and CaV channels in sea urchin sperm

Priego-Espinosa, D. A.; Darszon, A.; Guerrero, A.; Gonzalez-Cota, A. L.; Nishigaki, T.; Martinez-Mekler, G.; Carneiro, J.

10.1101/415687 — developmental biology — Posted on 2018-10-18

1227 A new computational method for membrane compressibility: Bilayer mechanical thickness revisited

Doktorova, M.; LeVine, M. V.; Khelashvili, G.; Weinstein, H.

10.1101/360792 — biophysics — Posted on 2018-10-18

1228 Tactile enrichment drives emergence of functional columns and improves sensory coding in L2/3 of mouse S1

LeMessurier, A. M.; Feldman, D. E.

10.1101/447508 — neuroscience — Posted on 2018-10-18

1229 Vaxrank: A Computational Tool For Designing Personalized Cancer Vaccines

Rubinsteyn, A.; Hodes, I.; Kodysh, J.; Hammerbacher, J.

10.1101/142919 — bioinformatics — Posted on 2018-10-18

1230 Geometrical structure of perceptual color space: mental representations and adaptation invariance

Ennis, R. J.; Zaidi, Q.

10.1101/447516 — neuroscience — Posted on 2018-10-18

1231 Targeted memory reactivation during sleep to strengthen memory for arbitrary pairings

Vargas, I. M.; Schechtman, E.; Paller, K. A.

10.1101/447623 — neuroscience — Posted on 2018-10-18

1232 Loss Of Kat2a Enhances Transcriptional Noise And Depletes Acute Myeloid Leukemia Stem-Like Cells

Domingues, A. F.; Kulkarni, R.; Giotopoulos, G.; Gupta, S.; Tan, S.; Foerner, E.; Romano Adao, R.; Zeka, K.; Huntly, B. J.; Prabakaran, S.; Pina, C.

10.1101/446096 — cancer biology — Posted on 2018-10-18

1233 QTL Mapping on a Background of Variance Heterogeneity

Corty, R. W.; Valdar, W.

10.1101/276980 — genetics — Posted on 2018-10-18

1234 High stretchability, strength and toughness of living cells enabled by hyperelastic vimentin network

Hu, J.; Li, Y.; Hao, Y.; Zheng, T.; Parada, G. A.; Wu, H.; Lin, S.; Wang, S.; Zhao, X.; Goldman, R. D.; Cai, S.; Guo, M.

10.1101/446666 — biophysics — Posted on 2018-10-18

1235 Forecasting autism gene discovery with machine learning and genome-scale data

Brueggeman, L.; Koomar, T.; Michaelson, J.

10.1101/370601 — bioinformatics — Posted on 2018-10-18

1236 Transcribed microsatellite allele lengths are often correlated with gene expression levels in natural sunflower populations

Ranathunge, C.; Wheeler, G. L.; Chimahusky, M.; Perkins, A. D.; Pramod, S.; Welch, M. E.

10.1101/339903 — evolutionary biology — Posted on 2018-10-18

1237 Biased gene retention in the face of massive nuclear introgression obscures species relationships

Forsythe, E. S.; Nelson, A. D.; Beilstein, M. A.

10.1101/197087 — evolutionary biology — Posted on 2018-10-18

1238 Forecasting autism gene discovery with machine learning and genome-scale data

Brueggeman, L.; Koomar, T.; Michaelson, J.

10.1101/370601 — bioinformatics — Posted on 2018-10-18

1239 Intact extrastriate visual network without primary visual cortex in a Rhesus macaque with naturally occurring Blindsight

Bridge, H.; Bell, A. H.; Ainsworth, M.; Sallet, J.; Premereur, E.; Ahmed, B.; Mitchell, A. S.; Schüffelgen, U.; Buckley, M.; Parker, A. J.; Krug, K.

10.1101/447482 — neuroscience — Posted on 2018-10-18

1240 Putting species back on the map: devising a robust method for quantifying the biodiversity impacts of land conversion

Duran, A. P.; Green, J. M.; West, C. D.; Visconti, P.; Burgess, N. D.; Virah-Sawmy, M.; Balmford, A.

10.1101/447466 — ecology — Posted on 2018-10-18

1241 Assembly and seasonality of core phyllosphere microbiota on perennial biofuel crops

Grady, K. L.; Sorensen, J. W.; Stopnisek, N.; Shade, A.

10.1101/446369 — microbiology — Posted on 2018-10-18

1242 Epigenome-wide association analysis of daytime sleepiness in the Multi-Ethnic Study of Atherosclerosis reveals African-American specific associations

Barfield, R.; Wang, H.; Liu, Y.; Brody, J. A.; Swenson, B.; Li, R.; Bartz, T. M.; Sotoodehnia, N.; Chen, Y.-d. I.; Cade, B. E.; Chen, H.; Patel, S. R.; Zhu, X.; Gharib, S. A.; Johnson, W. C.; Rotter, J. I.; Saxena, R.; Purcell, S.; Lin, X.; Redline, S.; Sofer, T.

10.1101/447474 — genomics — Posted on 2018-10-18

1243 Comparative genetic architectures of schizophrenia in East Asian and European populations

Lam, M.; Chen, C.-Y.; Li, Z.; Martin, A.; Bryois, J.; Ma, X.; Gaspar, H.; Ikeda, M.; Benyamin, B.; Brown, B.; Liu, R.; Zhou, W.; Huan, L.; Kamatani, Y.; Kim, S.-W.; Kubo, M.; Kusumawardhani, A.; Liu, C.-M.; Ma, H.; Periyasamy, S.; Takahashi, A.; Wang, Q.; Xu, Z.; Yu, H.; Zhu, F.; Psychiatric Genomics Consortium - Schizophrenia Working Group, ; Indonesia Schizophrenia Consortium, ; Genetic REsearch on schizophreniA neTwork-China and Netherland (GREAT-CN), ; Chen, W.; Faraone, S.; Glatt, S.; He, L.; Hyman, S.; Hwu, H.-G.; Li, T.; McCarroll, S.; Neale, B.; Sklar, P.; Wildenauer, D.; Yu, X.; Zh

10.1101/445874 — genetics — Posted on 2018-10-18

1244 Vigour/tolerance trade-off in cultivated sunflower (Helianthus annuus) response to salinity stress is linked to leaf elemental composition

Temme, A.; Kerr, K. L.; Donovan, L. A.

10.1101/447128 — plant biology — Posted on 2018-10-18

1245 Quantitative Proteomic Analysis of Prostate Tissue Specimens Identifies Deregulated ProteinComplexes in Primary Prostate Cancer

Zhou, B.; Yan, Y.; Wang, Y.; You, S.; Freeman, M.; Yang, W.

10.1101/447375 — cancer biology — Posted on 2018-10-18

1246 Unsupervised Machine learning to subtype Sepsis-Associated Acute Kidney Injury

Chaudhary, K.; Duffy, A.; Poojary, P.; Saha, A.; Chauhan, K.; Do, R.; Van Vleck, T.; Coca, S.; Chan, L.; Nadkarni, G.

10.1101/447425 — bioinformatics — Posted on 2018-10-18

1247 On Parameter Interpretability of Phenomenological-Based Semiphysical Models

Lema Perez, L.; Munoz-Tamayo, R.; Garcia Tirado, J. F.; Alvarez, H.

10.1101/446583 — bioengineering — Posted on 2018-10-18

1248 Live cell imaging of meiosis in Arabidopsis thaliana - a landmark system

Prusicki, M. A.; Keizer, E. M.; van Rosmalen, R. P.; Komaki, S.; Seifert, F.; Müller, K.; Wijnker, E.; Fleck, C.; Schnittger, A.

10.1101/446922 — cell biology — Posted on 2018-10-18

1249 Evolutionary couplings detect side-chain interactions

Hockenberry, A. J.; Wilke, C. O.

10.1101/447409 — biophysics — Posted on 2018-10-18

1250 A stable, long-term cortical signature underlying consistent behavior

Gallego, J. A.; Perich, M. G.; Chowdhury, R. H.; Solla, S. A.; Miller, L. E.

10.1101/447441 — neuroscience — Posted on 2018-10-18

1251 Focusing on what matters: Modulation of the human hippocampus by relational attention

Cordova, N. I.; Turk-Browne, N. B.; Aly, M.

10.1101/446443 — neuroscience — Posted on 2018-10-18

1252 Nanoscale organization of rotavirus replication machineries

Garces Suarez, Y.; Martinez, J. L.; Torres Hernandez, D.; Hernandez, H. O.; Mendez, M.; Wood, C.; Rendon-Mancha, J. M.; Silva-Ayala, D.; Lopez, S.; Guerrero, A.; Arias, C. F.

10.1101/445262 — microbiology — Posted on 2018-10-18

1253 Bursts and variability of beta oscillations mediate the effect of anxiety on motor exploration and motor learning

Sporn, S.; Hein, T.; Herrojo Ruiz, M.

10.1101/442772 — neuroscience — Posted on 2018-10-18

1254 Optical Sectioning of Live Mammal with Near-Infrared Light Sheet

Wang, F.; Wan, H.; Yue, J.; Zhang, M.; Ma, Z.; Sun, Q.; Qu, L.; Ma, H.; Zhong, Y.; Tian, Y.; Hong, G.; Li, W. J.; Liang, Y.; Liu, L.; Dai, H.

10.1101/447433 — bioengineering — Posted on 2018-10-18

1255 Quantitative insights into the cyanobacterial cell economy

Zavrel, T.; Faizi, M.; Loureiro, C.; Poschmann, G.; Stühler, K.; Sinetova, M.; Zorina, A.; Steuer, R.; Cerveny, J.

10.1101/446179 — microbiology — Posted on 2018-10-18

1256 The molecular genetics of hand preference revisited

de Kovel, C. G. F.; Francks, C.

10.1101/447177 — genetics — Posted on 2018-10-18

1257 RAxML-NG: A fast, scalable, and user-friendly tool for maximum likelihood phylogenetic inference

Kozlov, A.; Darriba, D.; Flouri, T.; Morel, B.; Stamatakis, A.

10.1101/447110 — bioinformatics — Posted on 2018-10-18

1258 Focusing on what matters: Modulation of the human hippocampus by relational attention

Cordova, N. I.; Turk-Browne, N. B.; Aly, M.

10.1101/446443 — neuroscience — Posted on 2018-10-18

1259 Social learning through associative processes: A computational theory

Lind, J.; Ghirlanda, S.; Enquist, M.

10.1101/446906 — animal behavior and cognition — Posted on 2018-10-18

1260 PP4-dependent HDAC3 dephosphorylation discriminates between axonal regeneration and regenerative failure

Hervera, A.; Zhou, L.; Palmisano, I.; McLachlan, E.; Kong, G.; Hutson, T. H.; Danzi, M. C.; Lemmon, V. P.; Bixby, J. L.; Matamoros-Angles, A.; Forsberg, K.; De Virgiliis, F.; Matheos, D. P.; Kwapis, J.; Wood, M. A.; Puttagunta, R.; Del Rio, J. A.; Di Giovanni, S.

10.1101/446963 — neuroscience — Posted on 2018-10-18

1261 Expectation and attention increase the integration of top-down and bottom-up signals in perception through different pathways

Gordon, N.; Tsuchiya, N.; Koenig-Robert, R.; Hohwy, J.

10.1101/446948 — neuroscience — Posted on 2018-10-18

1262 Parallel systems for sound processing and functional connectivity among layer 5 and 6 auditory corticothalamic neurons

Williamson, R. S.; Polley, D. B.

10.1101/447276 — neuroscience — Posted on 2018-10-18

1263 Whole genome sequencing Mycobacterium tuberculosis directly from sputum identifies more genetic diversity than sequencing from culture

Nimmo, C.; Shaw, L. P.; Doyle, R.; Williams, R.; Brien, K.; Burgess, C.; Breuer, J.; Balloux, F.; Pym, A. S.

10.1101/446849 — genomics — Posted on 2018-10-18

1264 Evolution of empathetic moral evaluation

Radzvilavicius, A.; Stewart, A.; Plotkin, J. B.

10.1101/447151 — evolutionary biology — Posted on 2018-10-18

1265 A network module for the Perseus software for computational proteomics facilitates proteome interaction graph analysis

Rudolph, J. D.; Cox, J.

10.1101/447268 — bioinformatics — Posted on 2018-10-18

1266 Atlas-based classification algorithms for identification of informative brain regions in fMRI data

Arco, J. E.; Diaz-Gutierrez, P.; Ramirez, J.; Ruz, M.

10.1101/446856 — neuroscience — Posted on 2018-10-18

1267 A Mathematical Model Relating Pitocin Use During Labor with Offspring Autism Development in Terms of Oxytocin Receptor Desensitization in the Fetal Brain

Gottlieb, M.

10.1101/446997 — neuroscience — Posted on 2018-10-18

1268 Structure and genome ejection mechanism of Podoviridae phage P68 infecting Staphylococcus aureus

Hrebik, D.; Stverakova, D.; Skubnik, K.; Fuzik, T.; Pantucek, R.; Plevka, P.

10.1101/447052 — microbiology — Posted on 2018-10-18

1269 Explaining heritable variance in human character

Derringer, J.

10.1101/446518 — genetics — Posted on 2018-10-18

1270 Construction of a germline-specific RNAi tool in C. elegans

Zou, L.; Wu, D.; Zang, X.; Wang, Z.; Wu, Z.; Chen, D.

10.1101/446898 — genetics — Posted on 2018-10-18

1271 Conducting social network analysis with animal telemetry data: applications and methods using spatsoc

Robitaille, A. L.; Webber, Q. M. R.; Vander Wal, E.

10.1101/447284 — ecology — Posted on 2018-10-18

1272 MITRE: predicting host status from microbiota time-series data

Bogart, E.; Creswell, R.; Gerber, G.

10.1101/447250 — bioinformatics — Posted on 2018-10-18

1273 Authorship inflation and author gender in pulmonology research.

Umberham, B.; Smith, C.; Henning, N.; Vassar, M.

10.1101/446385 — scientific communication and education — Posted on 2018-10-18

1274 Distinct neural mechanisms and temporal constraints govern a cascade of audiotactile interactions

Zumer, J. M.; White, T. P.; Noppeney, U.

10.1101/446112 — neuroscience — Posted on 2018-10-18

1275 Refacing: reconstructing anonymized facial features using GANs

Abramian, D.; Eklund, A.

10.1101/447102 — neuroscience — Posted on 2018-10-18

1276 Standardization and validation of a panel of cross-species microsatellites to individually identify the Asiatic wild dog (Cuon alpinus): implications in population estimation and dynamics

Modi, S.; Habib, B.; Ghaskadbi, P.; Nigam, P.; Mondol, S.

10.1101/447201 — genetics — Posted on 2018-10-18

1277 An empirical evaluation of multivariate lesion behaviour mapping using support vector regression

Sperber, C.; Wiesen, D.; Karnath, H.-O.

10.1101/446153 — neuroscience — Posted on 2018-10-18

1278 Comparable genomic copy number aberrations differ across astrocytoma malignancy grades

Pecina-Slaus, N.; Kafka, A.; Gotovac Jercic, K.; Logara, M.; Bukovac, A.; Bakaric, R.; Borovecki, F.

10.1101/446831 — cancer biology — Posted on 2018-10-18

1279 Ocular disease mechanisms elucidated by genetics of human fetal retinal pigment epithelium gene expression

Liu, B.; Calton, M. A.; Abell, N. S.; Benchorin, G.; Gloudemans, M. J.; Chen, M.; Hu, J.; Li, X.; Balliu, B.; Bok, D.; Montgomery, S. B.; Vollrath, D.

10.1101/446799 — genomics — Posted on 2018-10-18

1280 Diversification and collapse of a telomere elongation mechanism

Saint-Leandre, B.; Nguyen, S. C.; Levine, M.

10.1101/445429 — evolutionary biology — Posted on 2018-10-18

1281 Nutrient deposition enhances post-fire survival in non-N-fixing savanna tree seedlings

Varma, V.; Sankaran, M.

10.1101/444372 — ecology — Posted on 2018-10-18

1282 Lysosome exocytosis is required for mitosis

Nugues, C.; Helassa, N.; Rajamanoharan, D.; Burgoyne, R.; Haynes, L.

10.1101/375816 — cell biology — Posted on 2018-10-18

1283 CopySwitch - in vivo optimization of gene copy numbers for heterologous gene expression in Bacillus subtilis

Nadler, F.; Bracharz, F.; Kabisch, J.

10.1101/446393 — bioengineering — Posted on 2018-10-18

1284 Interaction of modified oligonucleotides with nuclear proteins, formation of novel nuclear structures and sequence-independent effects on RNA processing

Flynn, L. L.; Li, R.; Aung-Htut, M. T.; Pitout, I. L.; Cooper, J.; Hubbard, A.; Griffiths, L.; Bond, C.; Wilton, S. D.; Fox, A. H.; Fletcher, S.

10.1101/446773 — molecular biology — Posted on 2018-10-18

1285 PCF11 connects alternative polyadenylation to formation and spontaneous regression of neuroblastoma

Ogorodnikov, A.; Levin, M.; Tattikota, S.; Tokalov, S.; Hoque, M.; Scherzinger, D.; Marini, F.; Poetsch, A.; Binder, H.; Macher-Goeppinger, S.; Tian, B.; Schaefer, M.; Lackner, K.; Westermann, F.; Danckwardt, S.

10.1101/426536 — cancer biology — Posted on 2018-10-18

1286 Bundle-sheath cells are leaf \"water valves\" controlled by an H+-ATPase via xylem acidification

Grunwald, Y.; Wigoda, N.; Yaaran, A.; Sade, N.; Torne, T.; Gosa, S. C.; moran, n.; Moshelion, M.

10.1101/234286 — plant biology — Posted on 2018-10-18

1287 Patterns of recurrence after curative-intent surgery for pancreas cancer reinforce the importance of locoregional control and adjuvant chemotherapy.

Munir, R.; Soreide, K.; Ravindran, R.; Powell, J. J.; Harrison, E.; Adair, A.; Wigmore, S.; Parks, R.; Garden, O. J.; Kirkpatrick, L.; Wall, L. R.; Christie, A.; Penman, I.; McAvoy, N.; Save, V.; Stockman, A.; Worrall, D.; Ireland, H.; Weir, G.; Masson, N.; Hay, C.; Gordon-Smith, J.; Mole, D. J.

10.1101/270884 — pathology — Posted on 2018-10-18

1288 Conformational states control Lck switching between free and confined diffusion modes in T cells

Hilzenrat, G.; Pandzic, E.; Yang, Z.; Nieves, D. J.; Goyette, J.; Rossy, J.; Gaus, K.

10.1101/446732 — immunology — Posted on 2018-10-18

1289 Local and landscape drivers of aquatic-to-terrestrial subsidies in riparian ecosystems: a worldwide meta-analysis

Lafage, D.; Bergman, E.; Eckstein, L.; Osterling, M.; Sadler, J. P.; Piccolo, J. J.

10.1101/446815 — ecology — Posted on 2018-10-18

1290 Quantitative Characterization of Biological Age and Frailty Based on Locomotor Activity Records

Pyrkov, T. V.; Getmantsev, E.; Zhurov, B.; Avchaciov, K.; Pyatnitskiy, M.; Menshikov, L.; Khodova, K.; Gudkov, A. V.; fedichev, p. O.

10.1101/186569 — systems biology — Posted on 2018-10-18

1291 Spatial updating of attention across eye movements: A neuro-computational approach

Bergelt, J.; Hamker, F. H.

10.1101/440727 — neuroscience — Posted on 2018-10-18

1292 Multi-Method Molecular Characterisation of Human Dust-Mite-associated Allergic Asthma

Whittle, E.; Leonard, M.; Gant, T.; Tonge, D.

10.1101/446427 — molecular biology — Posted on 2018-10-18

1293 A genome-wide analysis of adhesion in Caulobacter crescentus identifies new regulatory and biosynthetic components for holdfast assembly

Hershey, D. M.; Fiebig, A.; Crosson, S.

10.1101/446781 — microbiology — Posted on 2018-10-18

1294 Novel DNA methylation sites of glucose and insulin homeostasis: an integrative cross-omics analysis

Liu, J.; Carnero-Montoro, E.; van Dongen, J.; Lent, S.; Nedeljkovic, I.; Ligthart, S.; Tsai, P.-C.; Martin, T. C.; Mandaviya, P. R.; Jansen, R.; Peters, M. J.; Duijts, L.; Jaddoe, V. W. V.; Tiemeier, H.; Felix, J. F.; Chu, A. Y.; Levy, D.; Hwang, S.-J.; Bressler, J.; Gondalia, R.; Salfati, E. L.; Herder, C.; Hidalgo, B. A.; Tanaka, T.; Moore, A. Z.; Lemaitre, R. N.; Jhun, M. A.; Smith, J. A.; Sotoodehnia, N.; Bandinelli, S.; Ferrucci, L.; Arnett, D. K.; Grallert, H.; Assimes, T. L.; Hou, L.; Baccarelli, A.; Whitsel, E. A.; van Dijk, K. W.; Amin, N.; Uitterlinden, A. G.; Sijbrands, E. J. G.; Fr

10.1101/432070 — genomics — Posted on 2018-10-18

1295 GRID - Genomics of Rare Immune Disorders: a highly sensitive and specific diagnostic gene panel for patients with primary immunodeficiencies

Simeoni, I.; Shamardina, O.; Deevi, S. V.; Thomas, M.; Megy, K.; Staples, E.; Whitehorn, D.; Duarte, D.; Mapeta, R.; Ouwehand, W. H.; Penkett, C. J.; Rayner-Matthews, P.; Stark, H.; Stephens, J. C.; Stirrups, K. E.; Turro, E.; NIHR BioResource, ; Thrasher, A.; Kuijpers, T. W.; Smith, K. G.; Savic, S.; Burns, S. O.; Thaventhiran, J. E.; Lango Allen, H.

10.1101/431544 — genomics — Posted on 2018-10-18

1296 Risky behaviors and Parkinson’s disease: A Mendelian randomization study in up to 1 million study participants

Grover, S.; Del Greco M, F.; Kasten, M.; Klein, C.; Lill, C. M.; Koenig, I. R.

10.1101/446807 — genetics — Posted on 2018-10-18

1297 The intrinsic and regulated proteomes of barley seeds in response to fungal infection

Kerr, E. D.; Phung, T. K.; Fox, G. P.; Platz, G. J.; Schulz, B. L.

10.1101/445916 — biochemistry — Posted on 2018-10-18

1298 Discordant perturbations of transcriptome and epigenome landscapes highlight dual roles of proinflammatory players in normal and IL1B-compromised OPC maturation trajectory in a prenatal model of diffuse white matter injury

Schang, A.-L.; van Steenwinckel, J.; Lipecki, J.; Rich, C.; Woolley-Allen, K.; Dyer, N.; Le Charpentier, T.; Fleiss, B.; Schafer, P.; Ott, S.; Mezger, V.; Saberan-Djoneidi, D.; Gressens, P.

10.1101/411702 — developmental biology — Posted on 2018-10-18

1299 Automatic Single-Cell Discrimination by Cellular Appearance using Convolutional Neural Network

Matsuoka, Y.; Nakatsuka, R.; Fujioka, T.

10.1101/446823 — cell biology — Posted on 2018-10-18

1300 Temporal population structure of invasive Group B Streptococcus during a period of rising disease incidence shows expansion of a CC17 clone

Jamrozy, D.; de Goffau, M. C.; Bijlsma, M. W.; van de Beek, D.; Kuijpers, T. W.; Parkhill, J.; van der Ende, A.; Bentley, S. D.

10.1101/447037 — genomics — Posted on 2018-10-18

1301 Sevoflurane Increases Locomotion Activity in Mice

Ton, H.; Ton, H.; Yang, L.

10.1101/447029 — animal behavior and cognition — Posted on 2018-10-18

1302 Ecological niche modeling the potential geographic distribution of four Culicoides species of veterinary significance in Florida

Sloyer, K.; Burkett-Cadena, N. D.; Yang, A.; Corn, J. L.; Vigil, S. L.; McGregor, B. L.; Wisely, S. M.; Blackburn, J. K.

10.1101/447003 — ecology — Posted on 2018-10-18

1303 Joint single cell DNA-Seq and RNA-Seq of gastric cancer reveals subclonal signatures of genomic instability and gene expression

Andor, N.; Lau, B. T.; Catalanotti, C.; Kumar, V.; Sathe, A.; Belhocine, K.; Wheeler, T. D.; Price, A. D.; Song, M.; Stafford, D.; Bent, Z.; DeMare, L.; Hepler, L.; Jett, S.; Lin, B. K.; Maheshwari, S.; Makarewicz, A. J.; Rahimi, M.; Sawhney, S. S.; Sauzade, M.; Shuga, J.; Sullivan-Bibee, K.; Weinstein, A.; Yang, W.; Yin, Y.; Kubit, M. A.; Chen, J.; Grimes, S. M.; Suarez, C. J.; Poultsides, G. A.; Schnall-Levin, M.; Bharadwaj, R.; Ji, H. P.

10.1101/445932 — genomics — Posted on 2018-10-17

1304 Independent mechanisms for acquired salt tolerance versus growth resumption induced by mild ethanol pretreatment in Saccharomyces cerevisiae

McDaniel, E. A.; Stuecker, T. N.; Veluvolu, M.; Gasch, A. P.; Lewis, J. A.

10.1101/445726 — microbiology — Posted on 2018-10-17

1305 Novel diamond shuttle to deliver flexible bioelectronics with reduced tissue compression

Na, K.; Sperry, Z. J.; Lu, J.; Voeroeslakos, M.; Parizi, S. S.; Bruns, T. M.; Yoon, E.; Seymour, J. P.

10.1101/435800 — bioengineering — Posted on 2018-10-17

1306 Mutation detection in thousands of acute myeloid leukemia cells using single cell RNA-sequencing

Petti, A. A.; Williams, S. R.; Miller, C. A.; Fiddes, I. T.; Srivatsan, S. N.; Chen, D. Y.; Fronick, C. C.; Fulton, R. S.; Church, D. M.; Ley, T. J.

10.1101/434746 — cancer biology — Posted on 2018-10-17

1307 Snapshot: clustering and visualizing epigenetic history during cell differentiation

Xiang, G.; Giardine, B.; An, L.; Sun, C.; Keller, C.; Heuston, E.; Bodine, D.; Hardison, R.; Zhang, Y.

10.1101/291880 — bioinformatics — Posted on 2018-10-17

1308 Cold-Induced Thermogenesis Increases Acetylation on the Brown Fat Proteome and Metabolome

Entwisle, S. W.; Sanchez-Gurmaches, J.; Lawrence, R. T.; Pedersen, D. J.; Jung, S. M.; Martin-Perez, M.; Guilherme, A.; Czech, M. P.; Guertin, D. A.; Villen, J.

10.1101/445718 — systems biology — Posted on 2018-10-17

1309 Fast two-photon volumetric imaging of an improved voltage indicator reveals electrical activity in deeply located neurons in the awake brain

Chavarha, M.; Villette, V.; Dimov, I.; Pradhan, L.; Evans, S.; Shi, D.; Yang, R.; Chamberland, S.; Bradley, J.; Mathieu, B.; St-Pierre, F.; Schnitzer, M. J.; Bi, G.; Toth, K.; Ding, J.; Dieudonne, S.; Lin, M.

10.1101/445064 — neuroscience — Posted on 2018-10-17

1310 A mixed-model approach for powerful testing of genetic associations with cancer risk incorporating tumor characteristics

Zhang, H.; Zhao, N.; Ahearn, T. U.; Wheeler, W.; Garcia-Closas, M.; Chatterjee, N.

10.1101/446039 — genetics — Posted on 2018-10-17

1311 Variation in pigmentation gene expression is associated with distinct aposematic color morphs in the poison frog, Dendrobates auratus

Stuckert, A.; Moore, E.; Coyle, K. P.; Davison, I.; MacManes, M. D.; Roberts, R.; Summers, K.

10.1101/445684 — evolutionary biology — Posted on 2018-10-17

1312 Large-scale neuron cell classification of single-channel and multi-channel extracellular recordings in the anterior lateral motor cortex

Parikh, R.

10.1101/445700 — neuroscience — Posted on 2018-10-17

1313 Cytoarchitecture and Layer Estimation in High-Resolution Neuroanatomical Images

LaGrow, T. J.; Moore, M. G.; Prasad, J. A.; Webber, A.; Davenport, M. A.; Dyer, E. L.

10.1101/445742 — neuroscience — Posted on 2018-10-17

1314 An empirical evaluation of multivariate lesion behaviour mapping using support vector regression

Sperber, C.; Karnath, H.-O.; Wiesen, D.

10.1101/446153 — neuroscience — Posted on 2018-10-17

1315 The glutathione cycle shapes synaptic glutamate activity

Sedlak, T.; Paul, B. D.; Parker, G. M.; Hester, L. D.; Y, T.; Kamiya, A.; Snyder, S. H.; Sawa, A.

10.1101/325530 — neuroscience — Posted on 2018-10-17

1316 Evaluation of North American Asian citrus psyllid (Hemiptera: Liviidae) population genetics by cytochrome P450 melt curve analysis

Macias-Velasco, J. F.; Brunson, R. T.; Hunter, W. B.; Bextine, B. R.

10.1101/445734 — evolutionary biology — Posted on 2018-10-17

1317 Diversification and collapse of a telomere elongation mechanism

Saint-Leandre, B.; Nguyen, S. C.; Levine, M.

10.1101/445429 — evolutionary biology — Posted on 2018-10-17

1318 The biggest losers: Habitat isolation deconstructs complex food webs from top to bottom

Häussler, J.; Ryser, R.; Stark, M.; Brose, U.; Rall, B.; Guill, C.

10.1101/439190 — ecology — Posted on 2018-10-17

1319 Murine MPDZ-Linked Hydrocephalus is Caused by Hyperpermeability of the Choroid Plexus

Horowitz, A.; Yang, J.; Simonneau, C.; Kilker, R.; Oakley, L.; Byrne, M.; Nichtova, Z.; Stefanescu, I.; Pardeep-Kumar, F.; Tripathi, S.; Londin, E.; Saugier-Veber, P.; Willard, B.; Thakur, M.; Pickup, S.; Smeyne, R.

10.1101/446500 — neuroscience — Posted on 2018-10-17

1320 Nitrogen starvation induces persister cell formation in Escherichia coli

Brown, D. R.

10.1101/445957 — microbiology — Posted on 2018-10-17

1321 Dynamic expression of Id3 defines the stepwise differentiation of tissue-resident regulatory T cells

Sullivan, J. M.; Höllbacher, B.; Campbell, D.

10.1101/359687 — immunology — Posted on 2018-10-17

1322 methyl-ATAC-seq measures DNA methylation at accessible chromatin

Spektor, R.; Tippens, N. D.; Mimoso, C. A.; Soloway, P. D.

10.1101/445486 — genomics — Posted on 2018-10-17

1323 Functional Morphology of Endurance Swimming Performance and Gait Transition Strategies in Balistoid Fishes

George, A. B.; Westneat, M. W.

10.1101/446526 — evolutionary biology — Posted on 2018-10-17

1324 DNA Repair Gene Expression Adjusted by the PCNA Metagene Predicts Survival in Multiple Cancers

Peterson, L. E.; Kovyrshina, T.

10.1101/446377 — bioinformatics — Posted on 2018-10-17

1325 Teaching methods shape neural tuning to visual words in beginning readers

van de Walle de Ghelcke, A.; Rossion, B.; Schiltz, C.; Lochy, A.

10.1101/446203 — neuroscience — Posted on 2018-10-17

1326 Processing of grassland soil C-N compounds into soluble and volatile molecules is depth stratified and mediated by genomically novel bacteria and archaea

Diamond, S.; Andeer, P.; Li, Z.; Crits-Christoph, A.; Burstein, D.; Anantharaman, K.; Lane, K. R.; Thomas, B. C.; Pan, C.; Northen, T.; Banfield, J. F.

10.1101/445817 — microbiology — Posted on 2018-10-17

1327 The GBAF chromatin remodeling complex binds H3K27ac and mediates enhancer transcription

Jefimov, K.; Alcaraz, N.; Kloet, S.; Varv, S.; Aastedatter Sakya, S.; Dalager Vaagenso, C.; Vermeulen, M.; Aasland, R.; Andersson, R.

10.1101/445148 — genomics — Posted on 2018-10-17

1328 Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors

Warrington, N. M.; Beaumont, R.; Horikoshi, M.; Day, F. R.; Helgeland, O.; Laurin, C.; Bacelis, J.; Peng, S.; Hao, K.; Feenstra, B.; Wood, A. R.; Mahajan, A.; Tyrrell, J.; Robertson, N.; Rayner, N. W.; Qiao, Z.; Moen, G.-H. O.; Vaudel, M.; Marsit, C. J.; Chen, J.; Nodzenski, M.; Schnurr, T. M.; Zafarmand, M. H.; Bradfield, J. P.; Grarup, N.; Kooijman, M. N.; Li-Gao, R.; Geller, F.; Ahluwalia, T. S.; Paternoster, L.; Rueedi, R.; Huikari, V.; Hottenga, J.-J.; Lyytikäinen, L.-P.; Cavadino, A.; Metrustry, S.; Cousminer, D. L.; Wu, Y.; Thiering, E.; Wang, C. A.; Have, C. T.; Vilor-Tejedor, N.; Jos

10.1101/442756 — genetics — Posted on 2018-10-17

1329 The glucocorticoid receptor ligand-binding domain confers drug-gated protein regulation in C. elegans

Monsalve, G. C.; Yamamoto, K. R.; Ward, J. D.

10.1101/445833 — genetics — Posted on 2018-10-17

1330 Comparative genetic architectures of schizophrenia in East Asian and European populations

10.1101/445874 — genetics — Posted on 2018-10-17

1331 Identifying and classifying shared selective sweeps from multilocus data

Harris, A. M.; DeGiorgio, M.

10.1101/446005 — evolutionary biology — Posted on 2018-10-17

1332 Defining Major Depressive Disorder Cohorts Using the EHR: Multiple Phenotypes Based on ICD-9 Codes and Medication Orders

Ingram, W. M.; Baker, A. M.; Bauer, C. R.; Brown, J. P.; Goes, F. S.; Larson, S.; Zandi, P. P.

10.1101/227561 — epidemiology — Posted on 2018-10-17

1333 Nuclear actin interactome analysis links actin to KAT14 histone acetyl transferase and mRNA splicing

Viita, T.; Kyheröinen, S.; Prajapati, B.; Virtanen, J.; Varjosalo, M.; Vartiainen, M.

10.1101/445973 — cell biology — Posted on 2018-10-17

1334 Errors in RNA-seq transcript abundance estimates

Arora, S.; Pattwell, S. S.; Holland, E. C.; Bolouri, H.

10.1101/445601 — bioinformatics — Posted on 2018-10-17

1335 An Analysis of Decision Under Risk in Rats

Constantinople, C. M.; Piet, A. T.; Brody, C. D.

10.1101/446575 — neuroscience — Posted on 2018-10-17

1336 Independent mechanisms for acquired salt tolerance versus growth resumption induced by mild ethanol pretreatment in Saccharomyces cerevisiae

McDaniel, E. A.; Stuecker, T. N.; Veluvolu, M.; Gasch, A. P.; Lewis, J. A.

10.1101/445726 — microbiology — Posted on 2018-10-17

1337 Quantitative insights into the cyanobacterial cell economy

Zavrel, T.; Faizi, M.; Loureiro, C.; Poschmann, G.; Stuhler, K.; Sinetova, M.; Zorina, A.; Steuer, R.; Cerveny, J.

10.1101/446179 — microbiology — Posted on 2018-10-17

1338 Stepwise evolution and convergent recombination underlie the global dissemination of carbapenemase-producing Escherichia coli

Patino-Navarrete, R.; Rosinski-Chupin, I.; Cabanel, N.; Gauthier, L.; Takissian, J.; Madec, J.-Y.; Hamze, M.; Bonnin, R. A.; Naas, T.; Glaser, P.

10.1101/446195 — microbiology — Posted on 2018-10-17

1339 Predicting Intra- and Intertypic Recombination in Enterovirus 71

Woodman, A.; Lee, K.-M.; Janissen, R.; Gong, Y.-N.; Shih, S.-R.; Dekker, N. H.; Cameron, C. E.

10.1101/445783 — microbiology — Posted on 2018-10-17

1340 Joint single cell DNA-Seq and RNA-Seq of gastric cancer reveals subclonal signatures of genomic instability and gene expression

Andor, N.; Lau, B. T.; Catalanotti, C.; Kumar, V.; Sathe, A.; Belhocine, K.; Wheeler, T. D.; Price, A. D.; Kang, M.; Stafford, D.; Bent, Z.; DeMare, L.; Hepler, L.; Jett, S.; Lin, B. K.; Maheshwari, S.; Makarewicz, A. J.; Rahimi, M.; Sawhney, S. S.; Sauzade, M.; Shuga, J.; Sullivan-Bibee, K.; Weinstein, A.; Yang, W.; Yin, Y.; Kubit, M. A.; Chen, J.; Grimes, S. M.; Suarez, C. J.; Poultsides, G. A.; Schnall-Levin, M.; Bharadwaj, R.; Ji, H. P.

10.1101/445932 — genomics — Posted on 2018-10-17

1341 Using long-read sequencing to detect imprinted DNA methylation

Gigante, S.; Gouil, Q.; Lucattini, A.; Keniry, A.; Beck, T.; Tinning, M.; Gordon, L.; Woodruff, C.; Speed, T. P.; Blewitt, M.; Ritchie, M.

10.1101/445924 — genomics — Posted on 2018-10-17

1342 Reverse GWAS: Using Genetics to Identify and Model Phenotypic Subtypes

Dahl, A.; Cai, N.; Ko, A.; Laakso, M.; Pajukanta, P.; Flint, J.; Zaitlen, N.

10.1101/446492 — genetics — Posted on 2018-10-17

1343 Defining trait-based microbial strategies with consequences for soil carbon cycling under climate change

Malik, A. A.; Martiny, J. B.; Brodie, E. L.; Martiny, A. C.; Treseder, K. K.; Allison, S. D.

10.1101/445866 — ecology — Posted on 2018-10-17

1344 Individual variation in the dear enemy phenomenon via territorial vocalizations in red squirrels

Robertson, J. G.; Boutin, S.; Humphries, M. M.; Dantzer, B.; Lane, J. E.; McAdam, A. G.

10.1101/445767 — animal behavior and cognition — Posted on 2018-10-17

1345 Single-Cell Transcriptomics Unveils Gene Regulatory Network Plasticity

Iacono, G.; Massoni-Badosa, R.; Heyn, H.

10.1101/446104 — genomics — Posted on 2018-10-17

1346 Highly Structured Homolog Pairing Reflects Functional Organization of the Drosophila Genome

AlHaj Abed, J.; Erceg, J.; Goloborodko, A.; Nguyen, S. C.; McCole, R. B.; Saylor, W.; Fudenberg, G.; Lajoie, B. R.; Dekker, J.; Mirny, L. A.; Wu, T.

10.1101/443887 — genetics — Posted on 2018-10-17

1347 Survival cost to relocation does not reduce population self-sustainability in an amphibian

Cayuela, H.; Gillet, L.; Laudelout, A.; Besnard, A.; Bonnaire, E.; Levionnois, P.; Muths, E.; Dufrene, M.; Kinet, T.

10.1101/446278 — ecology — Posted on 2018-10-17

1348 The winner takes it all: how semelparous insects can become periodical

Diekmann, O.; Planque, R.

10.1101/446252 — ecology — Posted on 2018-10-17

1349 Theoretical investigation of stochastic clearance of bacteria: First-passage analysis

Teimouri, H.; Kolomeisky, A. B.

10.1101/446591 — biophysics — Posted on 2018-10-17

1350 New Classification of Intrinsic Disorder in the Human Proteome

Giansanti, A.; Deiana, A.; Forcelloni, S.; Porrello, A.

10.1101/446351 — bioinformatics — Posted on 2018-10-17

1351 IsoProt: A fully reproducible one-stop-shop for the analysis of iTRAQ/TMT data

Griss, J.; Vinterhalter, G.; Schwaemmle, V.

10.1101/446070 — bioinformatics — Posted on 2018-10-17

1352 Dynamic Brain Connectivity Alternation Detection via Matrix-variate Differential Network Model

Ji, J.; He, Y.; Xie, L.

10.1101/446237 — bioinformatics — Posted on 2018-10-17

1353 A new universal pore measurement and clustering approach for surgical meshes

Brune, C.; Vogt, S.; Peiper, C.; Brinker, K.; Trzewik, J.

10.1101/446450 — bioengineering — Posted on 2018-10-17

1354 A new causality measure

Majumdar, K. K.; Dheer, P.

10.1101/446567 — bioengineering — Posted on 2018-10-17

1355 Multifunction control and evaluation of a 3D printed hand prosthesis with the Myo armband by hand amputees

Cognolato, M.; Atzori, M.; Marchesini, C.; Marangon, S.; Faccio, D.; Tiengo, C.; Bassetto, F.; Gassert, R.; Petrone, N.; Müller, H.

10.1101/445460 — bioengineering — Posted on 2018-10-17

1356 Microbial and Metabolic Succession on Common Building Materials Under High Humidity Conditions

Lax, S.; Cardona, C.; Zhao, D.; Winton, V. J.; Goodney, G.; Gao, P.; Gottel, N.; Hartmann, E. M.; Henry, C.; Thomas, P. M.; Kelley, S. T.; Stephens, B.; Gilbert, J. A.

10.1101/444521 — microbiology — Posted on 2018-10-17

1357 The genome-wide, multi-layered architecture of chromosome pairing in early Drosophila embryos

Erceg, J.; AlHaj Abed, J.; Goloborodko, A.; Lajoie, B. R.; Fudenberg, G.; Abdennur, N.; Imakaev, M.; McCole, R. B.; Nguyen, S. C.; Saylor, W.; Joyce, E. F.; Senaratne, T. N.; Hannan, M. A.; Nir, G.; Dekker, J.; Mirny, L. A.; Wu, C.-t.

10.1101/443028 — genetics — Posted on 2018-10-17

1358 Nutrient deposition enhances post-fire survival in non-N-fixing savanna tree seedlings

Varma, V.; Sankaran, M.

10.1101/444372 — ecology — Posted on 2018-10-17

1359 High stretchability, strength and toughness of living cells enabled by hyperelastic vimentin network

Hu, J.; Li, Y.; Hao, Y.; Zheng, T.; Parada, G.; Wu, H.; Lin, S.; Wang, S.; Zhao, X.; Goldman, R.; Cai, S.; Guo, M.

10.1101/446666 — biophysics — Posted on 2018-10-17

1360 The RNA-binding protein AATF coordinates rRNA maturation

10.1101/446260 — molecular biology — Posted on 2018-10-17

1361 Global mycorrhizal plants distribution linked to terrestrial carbon stocks

Soudzilovskaia, N. A.; van Bodegom, P. M.; Terrer Moreno, C.; van't Zelfde, M.; McCallum, I.; Fisher, J. B.; McCormack, L. M.; Brundrett, M.; de Sa, N. C.; Tedersoo, L.

10.1101/331884 — ecology — Posted on 2018-10-17

1362 Unraveling Tumor-Immune Heterogeneity in Advanced Ovarian Cancer Uncovers Immunogenic Effect of Chemotherapy

Jimenez-Sanchez, A.; Cybulska, P.; Lavigne, K.; Walther, T.; Nikolovski, I.; Mazaheri, Y.; Weigelt, B.; Chi, D. S.; Park, K. J.; Hollmann, T.; Couturier, D.-L.; Vargas, A.; Brenton, J. D.; Sala, E.; Snyder, A.; Miller, M. L.

10.1101/441428 — cancer biology — Posted on 2018-10-17

1363 The G protein-biased PZM21 and TRV130 act as partial agonists of μ-opioid receptors signaling to ion channel targets

Yudin, Y.; Rohacs, T.

10.1101/445536 — pharmacology and toxicology — Posted on 2018-10-17

1364 Unsupervised deconvolution of molecular heterogeneity uncovers novel signatures and glia-neuron ratio

Chen, L.; Wang, N.; Liu, C.; Herrington, D.; Clarke, R.; Zhang, Z.; Wang, Y.

10.1101/435677 — bioinformatics — Posted on 2018-10-17

1365 Fast two-photon volumetric imaging of an improved voltage indicator reveals electrical activity in deeply located neurons in the awake brain

Chavarha, M.; Villette, V.; Dimov, I.; Pradhan, L.; Evans, S.; Shi, D.; Yang, R.; Chamberland, S.; Bradley, J.; Mathieu, B.; Schnitzer, M. J.; Bi, G.; Toth, K.; Ding, J.; Dieudonne, S.; Lin, M.

10.1101/445064 — neuroscience — Posted on 2018-10-17

1366 Mitochondria form cholesterol-rich contact sites with the nucleus during retrograde response

Desai, R.; East, D. A.; Hardy, L.; Crosby, J.; Faccenda, D.; Alvarex, M. S.; Mainenti, M.; Hussey, L. K.; Bentham, R.; Szabadkai, G.; Zappulli, V.; Dhoot, G.; Fleck, R. A.; Vizcay-Barrena, G.; Smith, K.; Campanella, M.

10.1101/445411 — cell biology — Posted on 2018-10-17

1367 Gastrocnemius fascicles are shorter and more pennate immediately following acute Achilles tendon rupture

Hullfish, T. J.; O'Connor, K. M.; Baxter, J. R.

10.1101/445569 — bioengineering — Posted on 2018-10-17

1368 Challenges and perspectives of quantitative functional sodium imaging (fNaI)

Gandini Wheeler-Kingshott, C.; Reimer, F.; Palesi, F.; Ricciardi, A.; Castellazzi, G.; Golay, X.; Prados, F.; Solanky, B.; D'Angelo, E.

10.1101/375055 — neuroscience — Posted on 2018-10-17

1369 Widespread RNA editing dysregulation in Autism Spectrum Disorders

Tran, S.; Jun, H.-I.; Bahn, J. H.; Azghadi, A.; Ramaswami, G.; Van Nostrand, E. L.; Nguyen, T. B.; Hsiao, Y.-H. E.; Lee, C.; Pratt, G. A.; Yeo, G. W.; Geschwind, D. H.; Xiao, X.

10.1101/446625 — neuroscience — Posted on 2018-10-17

1370 Response to \"No evidence of functional co-adaptation between clustered microRNAs\"

Wang, Y.; Zhang, H.; Lu, J.

10.1101/313817 — evolutionary biology — Posted on 2018-10-17

1371 Predicting natural behavior from whole-brain neural dynamics

Scholz, M.; Linder, A. N.; Randi, F.; Sharma, A. K.; Yu, X.; Shaevitz, J. W.; Leifer, A.

10.1101/445643 — neuroscience — Posted on 2018-10-17

1372 Identifying stationary phases in multivariate time-series for highlighting behavioural modes and home range settlements

Patin, R.; Etienne, M.-P.; Lebarbier, E.; Chamaille-Jammes, S.; Benhamou, S.

10.1101/444794 — ecology — Posted on 2018-10-17

1373 A normalized template matching method for improving spike detection in extracellular voltage recordings

Laboy-Juarez, K.; Ahn, S.; Feldman, D. E.

10.1101/445585 — neuroscience — Posted on 2018-10-17

1374 Variably methylated regions in the newborn epigenome: environmental, genetic and combined influences

Czamara, D.; Eraslan, G.; Lahti, J.; Page, C. M.; Lahti-Pulkkinen, M.; Hämäläinen, E.; Kajantie, E.; Laivuori, H.; Villa, P. M.; Reynolds, R. M.; Nystad, W.; Haberg, S. E.; London, S. J.; O'Donnell, K. J.; Garg, E.; Meaney, M. J.; Entringer, S.; Wadhwa, P. D.; Buss, C.; Jones, M. J.; Lin, D. T.; MacIsaac, J. L.; Kobor, M. S.; Koen, N.; Zar, H. J.; Koenen, K. C.; Dalvie, S.; Stein, D. J.; Kondofersky, I.; Mueller, N. S.; Theis, F. J.; Major Depressive Disorder Working Group of the Psychiatric Genomics Consortium, ; Räikkönen, K.; Binder, E. B.

10.1101/436113 — genetics — Posted on 2018-10-17

1375 Asymmetrical template-DNA strand segregation can explain density-associated mutation-rate plasticity

Aanen, D. K.; Debets, A. J. M.

10.1101/307371 — evolutionary biology — Posted on 2018-10-17

1376 The mitochondrial DNA content can not predict the embryo viability

Qiu, Y.; Chen, S.; Chen, D.; Liu, P.; Xia, J.; Yang, L.; Song, Z.; Shi, Q.; Xie, L.; Zhu, Z.; Du, Y.; Jiang, H.; Wang, J.; Yang, H.; Xu, C.; Chen, F.

10.1101/445940 — ecology — Posted on 2018-10-17

1377 The Landscape of Parkin Variants Reveals Pathogenic Mechanisms and Therapeutic Targets in PD

Yi, W.; MacDougall, E. J.; Tang, M.; Roldan, A. K.; Gan-Or, Z.; Trempe, J.-F.; Fon, E.

10.1101/445551 — neuroscience — Posted on 2018-10-17

1378 The RNA-binding ATPase, Armitage, Couples piRNA Amplification in Nuage to Phased piRNA Production on Mitochondria

Ge, D. T.; Wang, W.; Tipping, C.; Gainetdinov, I.; Weng, Z.; Zamore, P. D.

10.1101/445825 — genetics — Posted on 2018-10-17

1379 Mutation detection in thousands of acute myeloid leukemia cells using single cell RNA-sequencing

Petti, A. A.; Williams, S. R.; Miller, C. A.; Fiddes, I. T.; Srivatsan, S. N.; Chen, D. Y.; Fronick, C. C.; Fulton, R. S.; Church, D. M.; Ley, T. J.

10.1101/434746 — cancer biology — Posted on 2018-10-17

1380 The PAGE Study: How Genetic Diversity Improves Our Understanding of the Architecture of Complex Traits

Wojcik, G.; Graff, M.; Nishimura, K. K.; Tao, R.; Haessler, J.; Gignoux, C. R.; Highland, H. M.; Patel, Y. M.; Sorokin, E. P.; Avery, C. L.; Belbin, G. M.; Bien, S. A.; Cheng, I.; Cullina, S.; Hodonsky, C. J.; Hu, Y.; Huckins, L. M.; Jeff, J.; Justice, A. E.; Kocarnik, J. M.; Lim, U.; Lin, B. M.; Lu, Y.; Nelson, S. C.; Park, S.-S. L.; Poisner, H.; Preuss, M. H.; Richard, M. A.; Schurmann, C.; Setiawan, V. W.; Sockell, A.; Vahi, K.; Vishnu, A.; Verbanck, M.; Walker, R.; Young, K. L.; Zubair, N.; Acuna-Alonso, V.; Ambite, J. L.; Barnes, K. C.; Boerwinkle, E.; Bottinger, E.; Bustamante, C. D.; Ca

10.1101/188094 — genetics — Posted on 2018-10-17

1381 Cytoneme-mediated signaling essential for tumorigenesis

Kornberg, T. B.; Fereres, S.; Hatori, R.; Hatori, M.

10.1101/446542 — cancer biology — Posted on 2018-10-17

1382 Cofactors revisited - predicting the impact of flavoprotein-related diseases on a genome scale

Wegrzyn, A. B.; Stolle, S.; Rienksma, R. A.; Martins dos Santos, V. A. P.; Bakker, B. M.; Suarez-Diez, M.

10.1101/343624 — systems biology — Posted on 2018-10-17

1383 A robust phylogenomic timetree for biotechnologically and medically important fungi in the genera Aspergillus and Penicillium

Steenwyk, J. L.; Shen, X.-X.; Lind, A. L.; Goldman, G. G.; Rokas, A.

10.1101/370429 — evolutionary biology — Posted on 2018-10-17

1384 Patient-specific detection of cancer genes reveals recurrently perturbed processes in esophageal adenocarcinoma

Mourikis, T.; Benedetti, L.; Foxall, E.; Temelkovski, D.; Nulsen, J.; Perner, J.; Cereda, M.; Lagergren, J.; Howell, M.; Yau, C.; Fitzgerald, R.; Scaffidi, P.; Ciccarelli, F. D.

10.1101/321612 — cancer biology — Posted on 2018-10-17

1385 Real-world expectations and their affective value modulate object processing

Caplette, L.; Gosselin, F.; Mermillod, M.; Wicker, B.

10.1101/408542 — neuroscience — Posted on 2018-10-17

1386 Minimum Information for Reusable Arthropod Abundance Data (MIReAAD)

Rund, S. S. C.; Braak, K.; Cator, L.; Copas, K.; Emrich, S. J.; Giraldo-Calderon, G. I.; Johansson, M. A.; Heydari, N.; Hobern, D.; Kelly, S. A.; Lawson, D.; Lord, C.; MacCallum, R. M.; Roche, D. G.; Ryan, S. J.; Schigel, D.; Vandegrift, K.; Watts, M.; Zaspel, J. M.; Pawar, S.

10.1101/429142 — ecology — Posted on 2018-10-17

1387 Guiding dose selection of monoclonal antibodies using a new parameter (AFTIR) for characterizing ligand binding systems

Ahmed, S.; Ellis, M.; Li, H.; Pallucchini, L.; Stein, A. M.

10.1101/432500 — pharmacology and toxicology — Posted on 2018-10-17

1388 Initial Characterization of the Two ClpP Paralogs of Chlamydia trachomatis Suggests Unique Functionality for Each

Wood, N. A.; Chung, K.; Blocker, A.; Rodrigues de Almeida, N.; Conda-Sheridan, M.; Fisher, D. J.; Ouellette, S. P.

10.1101/379487 — microbiology — Posted on 2018-10-17

1389 Separate the wheat from the chaff: genomic analysis of local adaptation in the red coral Corallium rubrum

Pratlong, M.; Haguenauer, A.; Brener, K.; Mitta, G.; Toulza, E.; Garrabou, J.; Bensoussan, N.; Pontarotti, P.; Aurelle, D.

10.1101/306456 — evolutionary biology — Posted on 2018-10-17

1390 Robust Estimation of the Phylogenetic Origin of Plastids Using a tRNA-Based Phyloclassifier

Lawrence, T. J.; Amrine, K. C. H.; Swingley, W. D.; Ardell, D. H.

10.1101/442608 — evolutionary biology — Posted on 2018-10-17

1391 ER-to-Golgi trafficking of procollagen in the absence of large carriers.

McCaughey, J.; Stevenson, N.; Cross, S.; Stephens, D.

10.1101/339804 — cell biology — Posted on 2018-10-17

1392 Where the really hard choices are: A general framework to quantify decision difficulty

Franco, J. P.; Yadav, N.; Bossaerts, P.; Murawski, C.

10.1101/405449 — animal behavior and cognition — Posted on 2018-10-17

1393 Twenty-Five Cohorts of Major Depressive Disorder in China: Evidence for Reduced Default Mode Network Functional Connectivity in Recurrent Depressive Patients

10.1101/321745 — neuroscience — Posted on 2018-10-17

1394 Staphylococcus aureus wall teichoic acid is a pathogen-associated molecular pattern that is recognized by langerin (CD207) on skin Langerhans cells

van Dalen, R.; De La Cruz Diaz, J. S.; Rumpret, M.; Fuchsberger, F. F.; van Teijlingen, N. H.; Hanske, J.; Rademacher, C.; Geijtenbeek, T. B. H.; Van Strijp, J. A. G.; Weidenmaier, C.; Peschel, A.; Kaplan, D. H.; van Sorge, N. M.

10.1101/238469 — microbiology — Posted on 2018-10-17

1395 Agent-based model of multicellular tumor spheroid evolution including cell metabolism

Cleri, F.

10.1101/431163 — biophysics — Posted on 2018-10-17

1396 Smed-egfr-4 is required for planarian eye regeneration

Elena, E.; Pallares, M. E.; Romero, R.; Cebria, F.

10.1101/446013 — developmental biology — Posted on 2018-10-17

1397 Glass confers rhabdomeric photoreceptor identity in Drosophila, but not across all metazoans

Bernardo-Garcia, F. J.; Syed, M.; Jekely, G.; Sprecher, S. G.

10.1101/446161 — developmental biology — Posted on 2018-10-17

1398 Cryo-EM structure of cardiac amyloid fibrils from an immunoglobulin light chain (AL) amyloidosis patient

Swuec, P.; Lavatelli, F.; Tasaki, M.; Paissoni, C.; Rognoni, P.; Maritan, M.; Brambilla, F.; Milani, P.; Mauri, P.; Camilloni, C.; Palladini, G.; Merlini, G.; Ricagno, S.; Bolognesi, M.

10.1101/444901 — biochemistry — Posted on 2018-10-17

1399 Protein aggregation and membrane bending govern nanotube morphology.

Alimohamadi, H.; Ovryn, B.; Rangamani, P.

10.1101/373811 — biophysics — Posted on 2018-10-17

1400 Dopaminergic medication reduces striatal sensitivity to negative outcomes in Parkinson’s disease

McCoy, B.; Jahfari, S.; Engels, G.; Knapen, T.; Theeuwes, J.

10.1101/445528 — neuroscience — Posted on 2018-10-17

1401 Haplotype assignment of virus NGS data using co-variation of variant frequencies

Goldstein, R. A.; Tamuri, A. U.; Roy, S.; Breuer, J.

10.1101/444877 — genomics — Posted on 2018-10-17

1402 The History, Advocacy and Efficacy of Data Management Plans

Smale, N.; Unsworth, K. J.; Denyer, G.; Barr, D. P.

10.1101/443499 — scientific communication and education — Posted on 2018-10-17

1403 Revealing S-layer Functions in the Hyperthermophilic Crenarchaeon Sulfolobus islandicus

Zhang, C.; Wipfler, R. L.; Li, Y.; Wang, Z.; Hallett, E. N.; Whitaker, R. J.

10.1101/444406 — microbiology — Posted on 2018-10-17

1404 A redox-regulated type III metacaspase controls cell death in a marine diatom

Graff van Creveld, S.; Ben-Dor, S.; Mizrachi, A.; Alcolombri, U.; Hopes, A.; Mock, T.; Rosenwasser, S.; Vardi, A.

10.1101/444109 — microbiology — Posted on 2018-10-17

1405 Transient arousal modulations are responsible for resting-state functional connectivity changes associated with head motion

Gu, Y.; Han, F.; Sainburg, L. E.; Liu, X.

10.1101/444463 — neuroscience — Posted on 2018-10-17

1406 Hydrogenotrophic methanogens of the mammalian gut: functionally similar, thermodynamically different. A modelling approach

Munoz-Tamayo, R.; Popova, M.; Tillier, M.; Morgavi, D. P.; Morel, J.-P.; Fonty, G.; Morel-Desrosiers, N.

10.1101/445171 — microbiology — Posted on 2018-10-17

1407 Nanoscale organization of rotavirus replication machineries

Garces Suarez, Y.; Martinez, J. L.; Torres Hernandez, D.; Hernandez, H. O.; Mendez, M.; Wood, C.; Rendon-Mancha, J. M.; Silva-Ayala, D.; Lopez, S.; Guerrero, A.; Arias, C. F.

10.1101/445262 — microbiology — Posted on 2018-10-17

1408 OSCA: a tool for omic-data-based complex trait analysis

Zhang, F.; Chen, W.; Zhu, Z.; Zhang, Q.; Deary, I. J.; Wray, N. R.; Visscher, P. M.; McRae, A. F.; Yang, J.

10.1101/445163 — bioinformatics — Posted on 2018-10-17

1409 Hypoxia-induced epigenetic silencing of polo-like kinase 2 promotes fibrosis in atrial fibrillation

Kuenzel, S. R.; Sekeres, K.; Kaemmerer, S.; Kolanowski, T.; Meyer-Roxlau, S.; Piorkowski, C.; Tugtekin, S. M.; Rose-John, S.; Yin, X.; Mayr, M.; Kuhlmann, J. D.; Wimberger, P.; Gruetzmann, K.; Herzog, N.; Kuepper, J.-H.; Guan, K.; Wagner, M.; Ravens, U.; Weber, S.; El-Armouche, A.

10.1101/445098 — pharmacology and toxicology — Posted on 2018-10-17

1410 Targeting microbial arsenic resistance genes: a new bioinformatic toolkit informs arsenic ecology and evolution in soil genomes and metagenomes

Dunivin, T. K.; Yeh, S. Y.; Shade, A.

10.1101/445502 — microbiology — Posted on 2018-10-17

1411 DNA methylation patterns of replicative senescence are strand-specific and reflect changes in chromatin conformation

Franzen, J.; Georgomanolis, T.; Selich, A.; Stoeger, R.; Brant, L.; Fernandez-Rebollo, E.; Grezella, C.; Ostrowska, A.; Begemann, M.; Rath, B.; Ho, A. D.; Rothe, M.; Schambach, A.; Papantonis, A.; Wagner, W.

10.1101/445114 — genomics — Posted on 2018-10-17

1412 A Simple Approximation To The Bias Of Gene-Environment Interactions In Case/Control Studies With Silent Disease

Lobach, I.; Sampson, J.; Lobach, S.; Alekseyenko, A.; Piryatinska, A.; He, T.; Zhang, L.

10.1101/444596 — genetics — Posted on 2018-10-17

1413 A computational framework for systematic exploration of biosynthetic diversity from large-scale genomic data

Navarro-Munoz, J.; Selem-Mojica, N.; Mullowney, M.; Kautsar, S.; Tryon, J.; Parkinson, E.; De Los Santos, E.; Yeong, M.; Cruz-Morales, P.; Abubucker, S.; Roeters, A.; Lokhorst, W.; Fernandez-Guerra, A.; Teresa Dias Cappelini, L.; Thomson, R.; Metcalf, W.; Kelleher, N.; Barona-Gomez, F.; Medema, M. H.

10.1101/445270 — bioinformatics — Posted on 2018-10-17

1414 A two-step mechanism for the inactivation of microtubule organizing center function at the centrosome

Magescas, J.; Zonka, J. C.; Feldman, J. L.

10.1101/446088 — cell biology — Posted on 2018-10-17

1415 PACS-1 and Adaptor Protein-1 Mediate ACTH Trafficking to the Regulated Secretory Pathway

Dirk, B. S.; End, C.; Pawlak, E. N.; Van Nynatten, L. R.; Jacob, R. A.; Heit, B.; Dikeakos, J. D.

10.1101/446229 — cell biology — Posted on 2018-10-17

1416 The triangle of ageing: a model of how repair, resilience to damage and asymmetric segregation are responses to replicative ageing

Borgqvist, J.; Welkenhuysen, N.; Cvijovic, M.

10.1101/446302 — systems biology — Posted on 2018-10-17

1417 Research challenges in Africa - an exploratory study on the experiences and opinions of African researchers

Ngongalah, L.; Niba, R. N.; Wepngong, E. N.; Musisi, J. M.

10.1101/446328 — scientific communication and education — Posted on 2018-10-17

1418 Transcriptional responses of Biomphalaria pfeifferi and Schistosoma mansoni following exposure to niclosamide, with evidence for a synergistic effect on snails following exposure to both stressors

Buddenborg, S. K.; Kamel, B.; Zhang, S.-M.; Mkoji, G. M.; Loker, E. S.

10.1101/446310 — molecular biology — Posted on 2018-10-17

1419 A small proportion of Talin molecules transmit forces to achieve muscle attachment in vivo

Lemke, S. B.; Weidemann, T.; Cost, A.-L.; Grashoff, C.; Schnorrer, F.

10.1101/446336 — developmental biology — Posted on 2018-10-17

1420 Efficient and reproducible somatic embryogenesis and micro propagation in tomato via novel structures -Rhizoid Tubers.

Saeed, W.; Naseem, S.; Gohar, D.; Ali, Z.

10.1101/446286 — plant biology — Posted on 2018-10-17

1421 CRISPR-Cas9 Screens Reveal Genes Regulating a G0-like State in Human Neural Progenitors

Feldman, H.; Toledo, C.; Arora, S.; Hoellerbauer, P.; Corrin, P.; Carter, L.; Kufeld, M.; Bolouri, H.; Basom, R.; Delrow, J.; Meier, J.; Zhang, F.; McFaline-Figueroa, J.; Trapnell, C.; Pollard, S.; Plaisier, C.; PADDISON, P.

10.1101/446344 — cell biology — Posted on 2018-10-17

1422 Nitrogen addition has minimal effect in Wyoming big sagebrush (Artemisia tridentata) communities

Beltz, C. W.; Mobley, M. L.; Burke, I. C.

10.1101/446294 — ecology — Posted on 2018-10-17

1423 Heat Shock Factor 1 Drives Intergenic Association of Its Target Gene Loci Upon Heat Shock

Chowdhary, S.; Kainth, A. S.; Pincus, D.; Gross, D. S.

10.1101/400499 — genetics — Posted on 2018-10-16

1424 Synergistic interactions between confinement and macromolecular crowding spatially order transcription and translation in cell-free expression

Norred, S. E.; Dabbs, R. M.; Chauhan, G.; Caveney, P. M.; Collier, C. P.; Abel, S. M.; Simpson, M. L.

10.1101/445544 — synthetic biology — Posted on 2018-10-16

1425 High throughput droplet single-cell Genotyping of Transcriptomes (GoT) reveals the cell identity dependency of the impact of somatic mutations

Nam, A. S.; Kim, K.-T.; Chaligne, R.; Izzo, F.; Ang, C.; Abu-Zeinah, G.; Omans, N. D.; Pastore, A.; Taylor, J.; Alonso, A.; Mariani, M.; Cubillos-Ruiz, J. R.; Tam, W.; Hoffman, R.; Scandura, J. M.; Rabadan, R.; Abdel-Wahab, O.; Smibert, P.; Landau, D. A.

10.1101/444687 — cancer biology — Posted on 2018-10-16

1426 Neurons remap to represent memories in the human entorhinal cortex

Qasim, S. E.; Miller, J.; Inman, C. S.; Gross, R.; Willie, J. T.; Lega, B.; Lin, J.-J.; Sharan, A.; Wu, C.; Sperling, M. R.; Sheth, S.; McKhann, G. M.; Smith, E. H.; Schevon, C.; Stein, J.; Jacobs, J.

10.1101/433862 — neuroscience — Posted on 2018-10-16

1427 Quantitative Analysis of Interactive Behavior of Mitochondria and Lysosomes Using Structured Illumination Microscopy

Chen, Q.; Shao, X.; Hao, M.; Tian, Z.; Wang, C.; Liu, F.; Zhang, K.; Wang, F.; Ling, P.; Guan, J.-L.; Diao, J.

10.1101/445841 — cell biology — Posted on 2018-10-16

1428 Modifying Reaction Diffusion: A Numerical Model for Turing Morphogenesis, Ben Jacob Patterns, and Cancer Growth

Trepka, K.

10.1101/370304 — biophysics — Posted on 2018-10-16

1429 TADs pair homologous chromosomes to promote interchromosomal gene regulation

Viets, K.; Sauria, M.; Chernoff, C.; Anderson, C.; Tran, S.; Dove, A.; Goyal, R.; Voortman, L.; Taylor, J.; Johnston, R. J.

10.1101/445627 — molecular biology — Posted on 2018-10-16

1430 HSF2BP Negatively Regulates Homologous Recombination in DNA Interstrand Crosslink Repair in Human Cells by Direct Interaction With BRCA2

Brandsma, I.; Sato, K.; van Rossum-Fikkert, S. E.; Reuter, M.; Odijk, H.; Verkaik, N.; van den Tempel, N.; Oostra, A. B.; Dekkers, D. H. W.; Bezstarosti, K.; Demmers, J. A. A.; Lebbink, J.; Wyman, C.; Dorsman, J. C.; van Gent, D. C.; Knipscheer, P.; Kanaar, R.; Zelensky, A. N.

10.1101/438945 — molecular biology — Posted on 2018-10-16

1431 Immune profiling of cord blood after prolonged rupture of membranes.

Tsaliki, E.; Turner, C.; Venturini, C.; Kam, C.; Strang, A.; Bailey, S.; Rodgers, A.; Levine, A.; Chain, B.; Simpson, N.; Riley, E.; Field, N.; Brocklehurst, P.; Noursadeghi, M.

10.1101/444216 — immunology — Posted on 2018-10-16

1432 Pixel Quantum Efficiency Differences and Variance Stabilization for sCMOS Single Molecule Localization Microscopy Data Analysis

Babcock, H. P.; Huang, F.

10.1101/445452 — biophysics — Posted on 2018-10-16

1433 Geometric principles of second messenger dynamics in dendritic spines.

Cugno, A.; Bartol, T. M.; Sejnowski, T. J.; Iyengar, R.; Rangamani, P.

10.1101/444489 — biophysics — Posted on 2018-10-16

1434 Individual differences in visual salience vary along semantic dimensions

de Haas, B.; Iakovidis, A. L.; Schwarzkopf, D. S.; Gegenfurtner, K. R.

10.1101/444257 — neuroscience — Posted on 2018-10-16

1435 Connectional architecture of a mouse hypothalamic circuit node controlling social behavior

Lo, L.; Kim, D.-W.; Yao, S.; Cetin, A.; Harris, J.; Zeng, H.; Anderson, D. J.; Weissbourd, B.

10.1101/445312 — neuroscience — Posted on 2018-10-16

1436 GAL4 drivers specific for Type Ib and Type Is motor neurons in Drosophila

Perez-Moreno, J. J.; O'Kane, C. J.

10.1101/445577 — neuroscience — Posted on 2018-10-16

1437 Orientation processing by synaptic integration across first-order tactile neurons

Hay, E.; Pruszynski, J. A.

10.1101/396705 — neuroscience — Posted on 2018-10-16

1438 Tertiary structural motif sequence statistics enable facile prediction and design of peptides that bind anti-apoptotic Bfl-1 and Mcl-1

Frappier, V.; Jenson, J. M.; Zhou, J.; Grigoryan, G.; Keating, A. E.

10.1101/425926 — biophysics — Posted on 2018-10-16

1439 Magic-BLAST, an accurate DNA and RNA-seq aligner for long and short reads

Boratyn, G. M.; Thierry-Mieg, J.; Thierry-Mieg, D.; Busby, B.; Madden, T. L.

10.1101/390013 — bioinformatics — Posted on 2018-10-16

1440 Communication and quorum sensing in non-living mimics of eukaryotic cells

Niederholtmeyer, H.; Chaggan, C.; Devaraj, N. K.

10.1101/352666 — synthetic biology — Posted on 2018-10-16

1441 Novel diamond shuttle to deliver flexible bioelectronics with reduced tissue compression

Na, K.; Sperry, Z. J.; Lu, J.; Voeroeslakos, M.; Parizi, S. S.; Bruns, T. M.; Yoon, E.; Seymour, J. P.

10.1101/435800 — bioengineering — Posted on 2018-10-16

1442 Bursts and variability of beta oscillations mediate the effect of anxiety on motor exploration and motor learning

Sporn, S.; Hein, T.; Herrojo Ruiz, M.

10.1101/442772 — neuroscience — Posted on 2018-10-16

1443 Essential Roles of the sppRA Fructose-Phosphate Phosphohydrolase Operon in Carbohydrate Metabolism and Virulence Expression by Streptococcus mutans

Zeng, L.; Burne, R. A.

10.1101/342170 — microbiology — Posted on 2018-10-16

1444 When sinks become sources: adaptive colonization in asexuals

Lavigne, F.; Martin, G.; Anciaux, Y.; Papaix, J.; Roques, L.

10.1101/433235 — evolutionary biology — Posted on 2018-10-16

1445 Pupillary dilations of mice performing a vibrotactile discrimination task reflect task engagement and response confidence.

Ganea, D. A.; Bexter, A.; Guenther, M.; Garderes, P. M.; Kampa, B. M.; Haiss, F.

10.1101/444919 — neuroscience — Posted on 2018-10-16

1446 Aggregates dramatically alter fibrin ultrastructure.

Caton, F.; Garcia, X.; Seyve, L.; Tellier, Z.; Chevreux, G.; Bihoreau, N.; Polack, B.

10.1101/432138 — biophysics — Posted on 2018-10-16

1447 vqtl: An R package for Mean-Variance QTL Mapping

Corty, R. W.; Valdar, W.

10.1101/149377 — genetics — Posted on 2018-10-16

1448 Pharmacologic activation of G protein-coupled estrogen receptor inhibits pancreatic ductal adenocarcinoma

Natale, C. A.; Li, J.; Dentchev, T.; Capell, B.; Seykora, J.; Stanger, B.; Ridky, T.

10.1101/365668 — cancer biology — Posted on 2018-10-16

1449 An efficient timer and sizer of protein motions reveals the time scales of functional dynamics in structured biomacromolecules

Chan, J.; Lin, H.-R.; Takemura, K.; Chang, K.-C.; Chang, Y.-Y.; Joti, Y.; Kitao, A.; Yang, L.-W.

10.1101/384511 — biophysics — Posted on 2018-10-16

1450 Sclerostin Deficiency Alters Peripheral B Lymphocyte Responses in Mice

Chow, A.; Mason, J.; Coney, L.; Bajwa, J.; Carlisle, C.; Zaslavsky, A.; Pellman, Y.; Garcia-Ojeda, M. E.; Economides, A.; Loots, G.; Manilay, J. O.

10.1101/357772 — immunology — Posted on 2018-10-16

1451 Rapid And Repeated Local Adaptation To Climate In An Invasive Plant

van Boheemen, L. A.; Atwater, D. Z.; Hodgins, K. A.

10.1101/420752 — evolutionary biology — Posted on 2018-10-16

1452 Deliberation and enaction during adaptive economic choice

Hawellek, D. J.; Brown, K. A.; Pesaran, B.

10.1101/445346 — neuroscience — Posted on 2018-10-16

1453 Cellular labeling of endogenous virus replication (CLEVR) reveals de novo insertions of the gypsy endogenous retrovirus in cell culture and in both neurons and glial cells of aging fruit flies

Chang, Y.-H.; Keegan, R. M.; Prazak, L.; Dubnau, J.

10.1101/445221 — genetics — Posted on 2018-10-16

1454 Functional diversity in a tritrophic system: Effects on biomass production, variability, and resilience of ecosystem functions

Ceulemans, R.; Gaedke, U.; Klauschies, T.; Guill, C.

10.1101/431981 — ecology — Posted on 2018-10-16

1455 Metabolic adaptations underlying genome flexibility in prokaryotes

Goyal, A.

10.1101/415182 — ecology — Posted on 2018-10-16

1456 An organoleptic survey of meads made with lactic acid-producing yeasts

Peepall, C.; Nickens, D. G.; Vinciguerra, J.; Bochman, M. L.

10.1101/445296 — microbiology — Posted on 2018-10-16

1457 Chronic Staphylococcus aureus lung infection correlates with proteogenomic and metabolic adaptations leading to an increased intracellular persistence

TAN, X.; Coureuil, M.; Ramond, E.; Euphrasie, D.; Dupuis, M.; Tros, F.; Meyer, J.; Nemanzny, I.; Chhuon, C.; Guerrera, I. C.; Ferroni, A.; Sermet-Gaudelus, I.; Nassif, X.; Charbit, A.; Jamet, A.

10.1101/414409 — microbiology — Posted on 2018-10-16

1458 Structure of transcribing RNA polymerase II-nucleosome complex

Farnung, L.; Vos, S. M.; Cramer, P.

10.1101/437574 — biochemistry — Posted on 2018-10-16

1459 Saccades and Handedness Interact to Affect Scene Memory

Ellmore, T. M.; Mackin, B.; Ng, K.

10.1101/351486 — neuroscience — Posted on 2018-10-16

1460 ahr2, but not ahr1a or ahr1b, is required for craniofacial and fin development and TCDD-dependent cardiotoxicity in zebrafish

Souder, J. P.; Gorelick, D. A.

10.1101/445213 — developmental biology — Posted on 2018-10-16

1461 Evaluation of the Potential of Two Common Pacific Coast Macroalgae for Mitigating Methane Emissions from Ruminants

Brooke, C.; Roque, B. M.; Najafi, N.; Gonzalez, M.; Pfefferlen, A.; DeAnda, V.; Ginsburg, D. W.; Harden, M. C.; Nuzhdin, S. V.; Salwen, J.; Kebreab, E.; Hess, M.

10.1101/434480 — systems biology — Posted on 2018-10-16

1462 PSMA Expression in the Hi-Myc Model; Extended Utility of a Representative Model of Prostate Adenocarcinoma for Biological Insight and as a Drug Discovery Tool

Simons, B. W.; Turtle, N. F.; Ulmert, D.; Abou, D.; Thorek, D. L.

10.1101/439596 — cancer biology — Posted on 2018-10-16

1463 Substantial Batch Effects in TCGA Exome Sequences Undermine Pan-Cancer Analysis of Germline Variants

Rasnic, R.; Brandes, N.; Zuk, O.; Linial, M.

10.1101/445049 — cancer biology — Posted on 2018-10-16

1464 Sparse additive interaction learning

Bhatnagar, S. R.; Lovato, A.; Yang, Y.; Greenwood, C. M.

10.1101/445304 — bioinformatics — Posted on 2018-10-16

1465 Dynamics of fitness distributions in the presence of a phenotypic optimum: an integro-differential approach

Gil, M.-E.; Hamel, F.; Martin, G.; Roques, L.

10.1101/444836 — evolutionary biology — Posted on 2018-10-16

1466 Development of a robust automated tool for the annotation of embryo morphokinetic parameters

Feyeux, M.; REIGNIER, A.; Mocaer, M.; Lammers, J.; Meistermann, D.; Vandormael-Pournin, S.; Cohen-Tannoudji, M.; Barriere, P.; Paul-Gilloteaux, P.; David, L.; Freour, T.

10.1101/445288 — developmental biology — Posted on 2018-10-16

1467 Probe Sensitivity to Cortical versus Intracellular Cytoskeletal Network Stiffness

Vahabikashi, A.; Young Park, C.; Perkumas, K.; Zhang, Z.; Deurloo, E. K.; Wu, H.; Weitz, D. A.; Stamer, W. D.; Goldman, R. D.; Fredberg, J. J.; Johnson, M.

10.1101/445320 — biophysics — Posted on 2018-10-16

1468 Condition-specific series of metabolic sub-networks and its application for gene set enrichment analysis

Tran, V. D. T.; Moretti, S.; Coste, A. T.; Amorim-Vaz, S.; Sanglard, D.; Pagni, M.

10.1101/200964 — systems biology — Posted on 2018-10-16

1469 Long-range phase synchronization of high-gamma activity in human cortex

Arnulfo, G.; Wang, S.; Williams, N.; Hirvonen, J.; Fato, M.; Nobili, L.; Cardinale, F.; Rubino, A.; Zhigalov, A.; Palva, S.; Palva, J.

10.1101/442251 — neuroscience — Posted on 2018-10-16

1470 ChiCMaxima: a robust and simple pipeline for detection and visualization of chromatin looping in Capture Hi-C

Ben Zouari, Y.; Molitor, A. M.; Sikorska, N.; Pancaldi, V.; Sexton, T.

10.1101/445023 — genomics — Posted on 2018-10-16

1471 Contrasted sex chromosome evolution in primates with and without sexual dimorphism

Shearn, R.; Lecompte, E.; Regis, C.; Mousset, S.; Penel, S.; Douay, G.; Crouau-Roy, B.; Marais, G.

10.1101/445072 — evolutionary biology — Posted on 2018-10-16

1472 Intravascular arrest of circulating tumor cells is a two-step process exploiting their adhesion repertoire.

Osmani, N.; Follain, G.; Garcia-Leon, M. J.; Lefebvre, O.; Harlepp, S.; GOETZ, J. G.

10.1101/443374 — cancer biology — Posted on 2018-10-16

1473 Maximum Caliber can build and infer models of oscillation in a three-gene feedback network

Firman, T.; Amgalan, A.; Ghosh, K.

10.1101/444307 — synthetic biology — Posted on 2018-10-16

1474 Bumetanide prevents brain trauma-induced depressive-like behavior.

Goubert, E.; Altvater, M.; Rovira, M.-N.; Khalilov, I.; Mazzarino, M.; Sebastiani, A.; Schaefer, M.; Rivera, C.; Pellegrino, C.

10.1101/443739 — neuroscience — Posted on 2018-10-16

1475 Human neurons from Christianson syndrome iPSCs reveal allele-specific responses to rescue strategies

Lizarraga, S. B.; Maguire, A. M.; Ma, L.; van Dyck, L. I.; Wu, Q.; Nagda, D.; Livi, L. L.; Pescosolido, M. F.; Schmidt, M.; Alabi, S.; Cowen, M. H.; Brito-Vargas, P.; Hoffman-Kim, D.; Gamzis Uzun, E. D.; Schlessinger, A.; Jones, R. N.; Morrow, E. M.

10.1101/444232 — neuroscience — Posted on 2018-10-16

1476 On Model Averaging Partial Regression Coefficients

Walker, J. A.

10.1101/133785 — ecology — Posted on 2018-10-16

1477 Establishment of the miniature fish species Danionella translucida as a genetically and optically tractable neuroscience model

Penalva, A.; Bedke, J.; Cook, E. S. B.; Barrios, J. P.; Bertram, E. P. L.; Douglass, A. D.

10.1101/444026 — neuroscience — Posted on 2018-10-16

1478 Baseline human gut microbiota profile in healthy people and standard reporting template

King, C. H.; Desai, H.; Sylvetsky, A. C.; LoTempio, J.; Ayanyan, S.; Carrie, J.; Crandall, K.; Fochtman, B.; Gasparyan, L.; Gulzar, N.; Howell, P.; Issa, N.; Krampis, K.; Mishra, L.; Morizono, H.; Pisegna, J. R.; Rao, S.; Ren, Y.; Simonyan, V.; Smith, K.; VedBrat, S.; Yao, M.; Mazumder, R.

10.1101/445353 — microbiology — Posted on 2018-10-16

1479 Visual adaptation and microhabitat choice in Lake Victoria cichlid fish

Mameri, D.; van Kammen, C.; Groothuis, T. G. G.; Seehausen, O.; Maan, M. E.

10.1101/443655 — evolutionary biology — Posted on 2018-10-16

1480 Detection of multiple circulating Leishmania species in Lutzomyia longipalpis in the city of Governador Valadares, southeastern Brazil

Cardoso, M. S.; Bento, G. A.; de Almeida, L. V.; de Castro, J. C.; Reis-Cunha, J. L.; Barbosa, V. d. A.; de Souza, C. F.; Brazil, R. P.; Valdivia, H. O.; Bartholomeu, D. C.

10.1101/445379 — epidemiology — Posted on 2018-10-16

1481 Insulin Receptor Deletion in S100a4-lineage cells accelerates age-related bone loss

Studentsova, V.; Knapp, E.; Loiselle, A.

10.1101/445155 — cell biology — Posted on 2018-10-16

1482 Exploratory and prospective model of stent restenosis after Percutaneous Coronary Intervention using MultivariateGaussian Subspatial Regression

Vicente-Palacios, V.; Vicente-Tavera, S.; Dorado-Diaz, I.; Galindo, P.; Gomez, I.; San Roman, J. A.; Fernandez-Aviles, F.; Sanchez, P. L.

10.1101/445361 — bioinformatics — Posted on 2018-10-16

1483 Effect of light intensity and nutritional value of food resources on flight response of adult parasitoid, Cotesia plutellae (Kurdjumov) (Hymenoptera: Braconidae)

Kumar, K.; Gautam, T.; Singh, A. K.

10.1101/444224 — animal behavior and cognition — Posted on 2018-10-16

1484 Roles of Polycomb gene EED in pathogenesis and prognosis of acute myeloid leukemia and diffuse large B cell lymphoma

Yu, W.; Du, H.

10.1101/444745 — systems biology — Posted on 2018-10-16

1485 Extreme resistance to Potato Virus Y in potato carrying the Rysto gene is mediated by a TIR-NLR immune receptor

Grech-Baran, M.; Witek, K.; Szajko, K.; Witek, A. I.; Morgiewicz, K.; Wasilewicz-Flis, I.; Jakuczun, H.; Marczewski, W.; Jones, J. D.; Hennig, J.

10.1101/445031 — plant biology — Posted on 2018-10-16

1486 The Microbial Metabolite 4-Cresol Improves Glucose Homeostasis and Enhances β-Cell Function

Brial, F.; Alzaid, F.; Sonomura, K.; Meneyrol, K.; Le Lay, A.; Pean, N.; Neves, A.; Chilloux, J.; Hedjazi, L.; Sato, T.-A.; Rodriguez Martinez, A.; Venteclef, N.; Nicholson, J. K.; Magnan, C.; Lathrop, M.; Dumas, M.-E.; Matsuda, F.; Zalloua, P.; Gauguier, D.

10.1101/444893 — physiology — Posted on 2018-10-16

1487 Electron Microscopy Analysis of hAPP-Induced Neurodegeneration in the Glomerular Network

Robbins, A. S.; Lehmann, K. S.; Bai, L.; Belluscio, L.

10.1101/444265 — neuroscience — Posted on 2018-10-16

1488 Mutators as drivers of adaptation in pathogenic bacteria and a risk factor for host jumps and vaccine escape

Silayeva, O.; Engelstaedter, J.; Barnes, A. C.

10.1101/355412 — microbiology — Posted on 2018-10-16

1489 Retrotransposon insertions can initiate colorectal cancer and are associated with poor survival

Cajuso, T.; Sulo, P.; Tanskanen, T.; Katainen, R.; Taira, A.; Hänninen, U. A.; Kondelin, J.; Forsström, L.; Välimäki, N.; Aavikko, M.; Kaasinen, E.; Ristimäki, A.; Koskensalo, S.; Lepistö, A.; Renkonen-Sinisalo, L.; Seppälä, T.; Kuopio, T.; Böhm, J.; Mecklin, J.-P.; Kilpivaara, O.; Pitkänen, E.; Palin, K.; Aaltonen, L. A.

10.1101/443580 — genomics — Posted on 2018-10-16

1490 Perceptual phenotypes: Perceptual gains and losses in synesthesia and schizophrenia

van Leeuwen, T. M.; Sauer, A.; Jurjut, A.-M.; Wibral, M.; Uhlhaas, P.; Singer, W.; Melloni, L.

10.1101/443846 — neuroscience — Posted on 2018-10-16

1491 EEG signal diversity reflects capability for behavioral responsiveness during propofol sedation

Bola, M.; Orłowski, P.; Płomecka, M.; Marchewka, A.

10.1101/444281 — neuroscience — Posted on 2018-10-16

1492 An efficient and robust laboratory workflow and tetrapod database for larger scale eDNA studies

Axtner, J.; Crampton-Platt, A.; Hoerig, L. A.; Mohamed, A.; Xu, C. C. Y.; Yu, D. W.; Wilting, A.

10.1101/345082 — molecular biology — Posted on 2018-10-16

1493 Human IFNε: Spaciotemporal expression, hormone regulation and innate immunity in the female reproductive tract

Bourke, N. M.; Achilles, S. L.; Huang, S. U.; Cumming, H. E.; Papageorgio, I.; Gearing, L. J.; Thakore, S.; Mangan, N. E.; Mesiano, S.; Hertzog, P. J.

10.1101/445007 — immunology — Posted on 2018-10-16

1494 Evolution of protein kinase substrate recognition at the active site

Bradley, D.; Beltrao, P.

10.1101/443945 — evolutionary biology — Posted on 2018-10-16

1495 The influence of fluctuating population densities on evolutionary dynamics

Pisa, H.; Hermisson, J.; Polechova, J.

10.1101/444273 — evolutionary biology — Posted on 2018-10-16

1496 Response of Australian pied oystercatchers Haematopus longirostris to increasing abundance of the beach bivalve prey Donax deltoides

Totterman, S. L.

10.1101/444786 — ecology — Posted on 2018-10-16

1497 CoCoScore: Context-aware co-occurrence scoring for text mining applications using distant supervision

Junge, A.; Jensen, L. J.

10.1101/444398 — bioinformatics — Posted on 2018-10-16

1498 Digital therapeutics for distributed response to global pandemics

Hacohen, A.; Cohen, R.; Efroni, S.; Barzel, B.; Bachelet, I.

10.1101/444851 — bioinformatics — Posted on 2018-10-16

1499 ForestQC: quality control on genetic variants from next-generation sequencing data using random forest

Li, J.; Jew, B.; Zhan, L.; Hwang, S.; Coppola, G.; Freimer, N. B.; Sul, J. H.

10.1101/444828 — bioinformatics — Posted on 2018-10-16

1500 Covalent Ligand Screening Uncovers a RNF4 E3 Ligase Recruiter for Targeted Protein Degradation Applications

Ward, C. C.; Kleinman, J. I.; Chung, C. Y. S.; Kim, K.; Petri, Y.; Lee, P. S.; Thomas, J. R.; Tallarico, J. A.; McKenna, J. M.; Schirle, M.; Nomura, D. K.

10.1101/439125 — biochemistry — Posted on 2018-10-16

1501 In situ 10-cell RNA sequencing in tissue and tumor biopsy samples

Singh, S.; Wang, L.; Schaff, D. L.; Sutcliffe, M. D.; Koeppel, A. F.; Kim, J.; Onengut-Gumuscu, S.; Park, K.-S.; Zong, H.; Janes, K. A.

10.1101/444182 — systems biology — Posted on 2018-10-16

1502 Subtraction and division of visual cortical population responses by the serotonergic system

Azimi, Z.; Spoida, K.; Barzan, R.; Wollenweber, P.; Mark, M. D.; Herlitze, S.; Jancke, D.

10.1101/444943 — neuroscience — Posted on 2018-10-16

1503 Cannabis Use in Youth is Associated with Limited Alterations in Brain Structure

Scott, J. C.; Rosen, A. F. G.; Moore, T. M.; Roalf, D. R.; Satterthwaite, T. D.; Calkins, M. E.; Ruparel, K.; Gur, R. E.; Gur, R. C.

10.1101/443911 — neuroscience — Posted on 2018-10-16

1504 Reduced visual and frontal cortex activation during visual working memory in grapheme-colour synaesthetes relative to young and older adults.

Pfeifer, G.; Ward, J.; Sigala, N.

10.1101/444992 — neuroscience — Posted on 2018-10-16

1505 Pupillary dilations of mice performing a vibrotactile discrimination task reflect task engagement and response confidence.

Ganea, D. A.; Bexter, A.; Guenther, M.; Garderes, P. M.; Kampa, B. M.; Haiss, F.

10.1101/444919 — neuroscience — Posted on 2018-10-16

1506 Abundance compensates kinetics: Similar effect of dopamine signals on D1 and D2 receptor populations

Hunger, L.; Kumar, A.; Schmidt, R.

10.1101/444984 — neuroscience — Posted on 2018-10-16

1507 Double-digest RAD-sequencing: do wet and dry protocol parameters impact biological results?

Cumer, T.; Pouchon, C.; Boyer, F.; Yannic, G.; Rioux, D.; Bonin, A.; Capblancq, T.

10.1101/445122 — molecular biology — Posted on 2018-10-16

1508 Two-component systems regulate swarming in Pseudomonas aeruginosa PA14

Joge, S.; Kollaran, M. A.; Harshitha, K.; Badal, D.; Prakash, D.; Mishra, A.; Varma, M. M.; Singh, V.

10.1101/445015 — microbiology — Posted on 2018-10-16

1509 Comparison of single-cell whole-genome amplification strategies

Estevez-Gomez, N.; Prieto, T.; Guillaumet-Adkins, A.; Heyn, H.; Prado-Lopez, S.; Posada, D.

10.1101/443754 — genomics — Posted on 2018-10-16

1510 Daphnia stressor database: Taking advantage of a decade of Daphnia ‘-omics’ data for gene annotation

Ravindran, S. P.; Lueneburg, J.; Gottschlich, L.; Tams, V.; Cordellier, M.

10.1101/444190 — genomics — Posted on 2018-10-16

1511 Automatic whale counting in satellite images with deep learning

Guirado, E.; Tabik, S.; L. Rivas, M.; Alcaraz-Segura, D.; Herrera, F.

10.1101/443671 — ecology — Posted on 2018-10-16

1512 STAPLER: a simple tool for creating, managing and parallelizing common high-throughput sequencing workflows

Tyrmi, J. S.

10.1101/445056 — bioinformatics — Posted on 2018-10-16

1513 netome: a computational framework for metabolite profiling and omics network analysis

Rahnavard, A.; Hitchcock, D.; Pacheco, J. A.; Deik, A.; Dennis, C.; Jeanfavre, S.; Pierce, K.; Bullock, K.; Costliow, Z.; Clish, C. B.

10.1101/443903 — bioinformatics — Posted on 2018-10-16

1514 Cryo-EM structure of cardiac amyloid fibrils from an immunoglobulin light chain (AL) amyloidosis patient

Swec, P.; Lavatelli, F.; Tasaki, M.; Paissoni, C.; Rognoni, P.; Maritan, M.; Brambilla, F.; Milani, P.; Mauri, P.; Camilloni, C.; Palladini, G.; Merlini, G.; Ricagno, S.; Bolognesi, M.

10.1101/444901 — biochemistry — Posted on 2018-10-16

1515 Effect of automation on the accuracy of alchemical free energy calculation protocols over a set of ACK1 inhibitors

Granadino-Roldan, J. M.; Mey, A. S. J. S.; Perez, J. J.; Bosisio, S.; Rubio-Martinez, J.; Michel, J.

10.1101/333120 — molecular biology — Posted on 2018-10-16

1516 Global analysis of the RpaB regulon based on the positional distribution of HLR1 sequences and comparative differential RNA-Seq data

Riediger, M.; Kadowaki, T.; Nagayama, R.; Georg, J.; Hihara, Y.; Hess, W. R.

10.1101/443713 — microbiology — Posted on 2018-10-16

1517 Genome rearrangements and selection in multi-chromosome bacteria Burkholderia spp

Bochkareva, O. O.; Moroz, E. V.; Davydov, I. I.; Gelfand, M. S.

10.1101/319723 — genomics — Posted on 2018-10-16

1518 Automatically eliminating errors induced by suboptimal parameter choices in transcript assembly

DeBlasio, D.; Kingsford, C.

10.1101/342865 — bioinformatics — Posted on 2018-10-16

1519 Reconciling S-LDSC and LDAK models and functional enrichment estimates

Gazal, S.; Marquez-Luna, C.; Finucane, H. K.; Price, A. L.

10.1101/256412 — genetics — Posted on 2018-10-16

1520 Actomyosin-mediated nanostructural remodeling of the presynaptic vesicle pool by cannabinoids induces long-term depression

McFadden, M. H.; Xu, H.; Cui, Y.; Piskorowski, R. A.; Leterrier, C.; Zala, D.; Venance, L.; Chevaleyre, V.; Lenkei, Z.

10.1101/444950 — neuroscience — Posted on 2018-10-16

1521 Acute physical exercise of moderate intensity improves memory consolidation in humans via BDNF and endocannabinoid signaling

Marin Bosch, B.; Bringard, A.; Logrieco, M. G.; Lauer, E.; Imobersteg, N. M.; Ferretti, G.; Thomas, A.; Schwartz, S.; Igloi, K.

10.1101/211227 — neuroscience — Posted on 2018-10-16

1522 Nanopore formation in the cuticle of the insect olfactory sensillum

Ando, T.; Sekine, S.; Inagaki, S.; Misaki, K.; Badel, L.; Morita, H.; Mustafa, S. M.; Chihara, T.; Kazama, H.; Yonemura, S.; Hayashi, S.

10.1101/444729 — developmental biology — Posted on 2018-10-16

1523 Master regulators of genetic interaction networks mediating statin drug response in Saccharomyces cerevisiae vary with genetic background

Busby, B. P.; Niktab, E.; Roberts, C. A.; Coorey, N. V.; Sheridan, J. P.; Senanayake, D. S.; Munkacsi, A. B.; Atkinson, P. H.

10.1101/443879 — systems biology — Posted on 2018-10-16

1524 Longitudinal Visual Analytics for Unpacking the Cancer Journey

Yuan, Z.; Finan, S.; Warner, J.; Savova, G.; Hochheiser, H.

10.1101/444356 — cancer biology — Posted on 2018-10-16

1525 Different genetic mechanisms mediate spontaneous versus UVR-induced malignant melanoma

Walker, G. J.; Ferguson, B.; Handoko, H.; Mukhopadhyay, P.; Chitsazan, A.; Balmer, L.; Morahan, G.

10.1101/443697 — cancer biology — Posted on 2018-10-16

1526 Biology and Bias in Cell Type-Specific RNAseq of Nucleus Accumbens Medium Spiny Neurons

Kronman, H.; Richter, F.; Labonte, B.; Chandra, R.; Zhao, S.; Hoffman, G. E.; Lobo, M. K.; Schadt, E.; Nestler, E. J.

10.1101/444315 — neuroscience — Posted on 2018-10-16

1527 MicroRNAs buffer genetic variation at specific temperatures during embryonic development

Amourda, C.; Chong, J.; Saunders, T. E.

10.1101/444810 — developmental biology — Posted on 2018-10-16

1528 Deficient FGF signaling in the developing peripheral retina disrupts ciliary margin development and causes aniridia

Balasubramanian, R.; Tao, C.; Polanco, K.; Zhong, J.; Wang, F.; Ma, L.; Zhang, X.

10.1101/443416 — developmental biology — Posted on 2018-10-16

1529 Transition of Wnt signaling microenvironment delineates the squamo-columnar junction and emergence of squamous metaplasia of the cervix

Chumduri, C.; Gurumurthy, R. K.; Berger, H.; Koster, S.; Brinkmann, V.; Klemm, U.; Mollenkopf, H.-J.; Herbst, H.; Mangler, M.; Meyer, T. F.

10.1101/443770 — cancer biology — Posted on 2018-10-16

1530 Proteotoxic stress-induced Nrf1 transcriptional program requires a functional TIP60 complex

Vangala, J. R.; Radhakrishnan, S. K.

10.1101/443937 — molecular biology — Posted on 2018-10-16

1531 Diverse chemical compounds target Plasmodium falciparum plasma membrane lipid homeostasis

Bhatnagar, S.; Nicklas, S.; Morrisey, J. M.; Goldberg, D. E.; Vaidya, A. B.

10.1101/444158 — microbiology — Posted on 2018-10-16

1532 PD-1 suppresses the maintenance of cell couples between cytotoxic T cells and tumor target cells within the tumor

Ambler, R.; Edmunds, G. L.; Toti, G.; Morgan, D. J.; Wuelfing, C.

10.1101/443788 — immunology — Posted on 2018-10-16

1533 Quantitative reconstruction of time-varying 3D cell forces with traction force optical coherence microscopy

Mulligan, J. A.; Feng, X.; Adie, S. G.

10.1101/444240 — bioengineering — Posted on 2018-10-16

1534 Experiments and simulations on short chain fatty acid production in a colonic bacterial community

Yu, B.; Dukovski, I.; Kong, D.; Bobrow, J.; Ostrinskaya, A.; Segre, D.; Thorsen, T.

10.1101/444760 — systems biology — Posted on 2018-10-16

1535 Adaptive eQTLs reveal the evolutionary impacts of pleiotropy and tissue-specificity, while contributing to health and disease in human populations

Quiver, M. H.; Lachance, J.

10.1101/444737 — genomics — Posted on 2018-10-16

1536 Using experimental data and information criteria to guide model selection for reaction--diffusion problems in mathematical biology

Warne, D.; Baker, R.; Simpson, M.

10.1101/444679 — biophysics — Posted on 2018-10-16

1537 DNA replication initiation in Bacillus subtilis; Structural and functional characterisation of the essential DnaA-DnaD interaction

Martin, E.; Williams, H. E. L.; Pitoulias, M.; Stevens, D.; Winterhalter, C.; Craggs, T. D.; Murray, H.; Searle, M. S.; Soultanas, P.

10.1101/444885 — biochemistry — Posted on 2018-10-16

1538 How face perception unfolds over time

Dobs, K.; Isik, L.; Pantazis, D.; Kanwisher, N.

10.1101/442194 — neuroscience — Posted on 2018-10-16

1539 Contribution of sensory encoding to measured bias

Jin, M.; Glickfeld, L.

10.1101/444430 — neuroscience — Posted on 2018-10-16

1540 Value-based Decision Making Takes Place in the Action Domain in the Prefrontal Cortex

Lin, Z.; Nie, C.; Zhang, Y.; Chen, Y.; Yang, T.

10.1101/444646 — neuroscience — Posted on 2018-10-16

1541 Moving beyond neurons: the role of cell type-specific gene regulation in Parkinson’s disease heritability

Reynolds, R. H.; Botia, J. A.; Nalls, M. A.; International Parkinson's Disease Genomics Consortium (IPDGC), ; System Genomics of Parkinson's Disease (SGPD), ; Hardy, J.; Gagliano, S. A.; Ryten, M.

10.1101/442152 — genomics — Posted on 2018-10-16

1542 The COMA complex is required for positioning Ipl1 activity proximal to Cse4 nucleosomes in budding yeast

Fischboeck, J.; Singh, S.; Potocnjak, M.; Hagemann, G.; Solis, V.; Woike, S.; Ghodgaonkar, M.; Andreani, J.; Herzog, F.

10.1101/444570 — cell biology — Posted on 2018-10-16

1543 Rhizosphere microbes influence host circadian clock function

Hubbard, C. J.; McMinn, R. L.; Weinig, C.

10.1101/444539 — plant biology — Posted on 2018-10-16

1544 Identification of essential regulatory elements in the human genome

telenti, a.; Wells, A. C.; Heckerman, D.; Torkamani, A.; Ren, B.; di Iulio, J.

10.1101/444562 — genomics — Posted on 2018-10-16

1545 Capturing the dynamics of genome replication on individual ultra-long nanopore sequence reads

Mueller, C. A.; Boemo, M. A.; Spingardi, P.; Kessler, B.; Kriaucionis, S.; Simpson, J. T.; Nieduszynski, C. A.

10.1101/442814 — genomics — Posted on 2018-10-16

1546 Genetic networks underlying natural variation in basal and induced activity levels in Drosophila melanogaster

Watanabe, L. P.; Gordon, C. J.; Riddle, N. C.

10.1101/444380 — genetics — Posted on 2018-10-16

1547 Programmed DNA elimination of germline development genes in songbirds

Kinsella, C. M.; Ruiz-Ruano, F. J.; Dion-Cote, A.-M.; Charles, A. J.; Gossmann, T. I.; Cabrero, J.; Kappei, D.; Hemmings, N.; Simons, M. J. P.; Camacho, J. P. M.; Forstmeier, W.; Suh, A.

10.1101/444364 — evolutionary biology — Posted on 2018-10-16

1548 Parent-offspring conflict, ecology, and life history diversification of livebearing fishes

Tobler, M.; Culumber, Z.

10.1101/442830 — evolutionary biology — Posted on 2018-10-16

1549 Comparative Pathway Integrator: a framework of meta-analytic integration of multiple transcriptomic studies for consensual and differential pathway analysis

Zeng, X.; Fang, Z.; Ma, T.; Lin, C.-W.; Tseng, G.

10.1101/444604 — bioinformatics — Posted on 2018-10-16

1550 A direct comparison of genome alignment and transcriptome pseudoalignment

Yi, L.; Liu, L.; Melsted, P.; Pachter, L.

10.1101/444620 — bioinformatics — Posted on 2018-10-16

1551 Coherent neuronal dynamics driven by optogenetic stimulation in the primate brain

Shewcraft, R. A.; Dean, H. L.; Wong, Y. T.; Hagan, M. A.; Fabiszak, M. M.; Pesaran, B.

10.1101/437970 — neuroscience — Posted on 2018-10-16

1552 Microbiota-dependent elevation of Alcohol Dehydrogenase in Drosophila is associated with changes in alcohol-induced hyperactivity and alcohol preference

Blundon, M. A.; Park, A.; Keith, S.; Oliver, S. L.; Eutsey, R. A.; Pyzel, A. M.; Lau, T. W.; Huang, J. H.; Kolev, H. M.; Hiller, N. L.; Atkinson, N. S.; Minden, J. S.; McCartney, B. M.

10.1101/444471 — microbiology — Posted on 2018-10-16

1553 Crystal structure of m4-1BB/4-1BBL complex reveals an unusual dimeric ligand that undergoes structural changes upon receptor binding.

Zajonc, D.; Bitra, A.; Doukov, T.; Destito, G.; Croft, M.

10.1101/444554 — immunology — Posted on 2018-10-16

1554 Association study of long-term kidney transplant rejection using whole-exome sequencing

Gioia, L.; Kurian, S.; Mondala, T.; Bassaganyas, L.; Kwok, P.-Y.; Salomon, D.; Su, A.

10.1101/444497 — genetics — Posted on 2018-10-16

1555 Cullin3-RING ubiquitin ligases are intimately linked to the unfolded protein response of the endoplasmic reticulum

Kim, K.; Park, S.; Kim, J.

10.1101/428136 — cell biology — Posted on 2018-10-16

1556 Unbiased Atomistic Insight in the Mechanisms and Solvent role for Globular protein Dimer Dissociation

Brotzakis, F.; Bolhuis, P. G.

10.1101/442889 — biophysics — Posted on 2018-10-16

1557 Novel diamond shuttle to deliver flexible bioelectronics with reduced tissue compression

Na, K.; Sperry, Z. J.; Lu, J.; Voeroeslakos, M.; Parizi, S. S.; Bruns, T. M.; Yoon, E.; Seymour, J. P.

10.1101/435800 — bioengineering — Posted on 2018-10-16

1558 Tightly-orchestrated rearrangements govern catalytic center assembly of the ribosome

Zhou, Y.; Musalgaonkar, S.; Johnson, A. W.; Taylor, D. W.

10.1101/444414 — biochemistry — Posted on 2018-10-16

1559 Correlation between the oral microbiome and brain resting state connectivity in smokers

Lin, D.; Hutchison, K.; Portillo, S.; Vegara, V.; Ellingson, J.; Liu, J.; Carroll-Portillo, A.; Calhoun, V.

10.1101/444612 — microbiology — Posted on 2018-10-16

1560 A membrane-depolarising toxin substrate of the Staphylococcus aureus Type VII protein secretion system targets eukaryotes and bacteria

Ulhuq, F. R.; Duggan, G.; Guo, M.; Mendonca, C.; Chalmers, J. D.; Cao, Z.; Kneuper, H.; Murdoch, S.; Thomson, S.; Strahl, H.; Trost, M.; Mostowy, S.; Palmer, T.

10.1101/443630 — microbiology — Posted on 2018-10-16

1561 Dietary lysozyme supplement alters serum biochemical makers and milk metabolite profile of sows via gut microbiota

Zhou, J.; Xiong, X.; Zou, L.; Yin, J.; Wang, K.; Shao, Y.; Yin, Y.

10.1101/444778 — microbiology — Posted on 2018-10-16

1562 A simple approximation to bias in gene-environment interaction estimates when a case might not be the case

Lobach, I.; Kim, I.; Alekseyenko, A.; Lobach, S.; Zhang, L.

10.1101/444588 — genetics — Posted on 2018-10-16

1563 Spontaneous aggressive ERα+ mammary tumor model is driven by Kras activation

Campbell, K. M.; O'Leary, K. A.; Rugowski, D. E.; Mulligan, W. A.; Barnell, E. K.; Skidmore, Z. L.; Krysiak, K.; Griffith, M.; Schuler, L. A.; Griffith, O. L.

10.1101/442624 — cancer biology — Posted on 2018-10-16

1564 Evaluating intraspecific diversity of a fish population using environmental DNA: An approach to distinguish true haplotypes from erroneous sequences

Tsuji, S.; Miya, M.; Ushio, M.; Sato, H.; Minamoto, T.; Yamanaka, H.

10.1101/429993 — molecular biology — Posted on 2018-10-15

1565 Robust predictions of specialized metabolism genes through machine learning

Moore, B. M.; Wang, P.; Fan, P.; Leong, B.; Schenck, C. A.; Lloyd, J. P.; Lehti-Shiu, M.; Last, R.; Pichersky, E.; Shiu, S.-H.

10.1101/304873 — plant biology — Posted on 2018-10-15

1566 Intravascular arrest of circulating tumor cells is a two-step process exploiting their adhesion repertoire.

Osmani, N.; Follain, G.; Garcia-Leon, M. J.; Lefebvre, O.; Harlepp, S.; GOETZ, J. G.

10.1101/443374 — cancer biology — Posted on 2018-10-15

1567 Quantitative Analysis of a Transient Dynamics of a Gene Regulatory Network

Lee, J.; Lee, J.

10.1101/438606 — biophysics — Posted on 2018-10-15

1568 High resolution atlasing of the venous brain vasculature from 7T quantitative susceptibility

Huck, J.; Wanner, Y.; Fan, A. P.; Schmidt, A.-T.; Grahl, S.; Schneider, U.; Villringer, A.; Steele, C. J.; Tardif, C. L.; Bazin, P.-L.; Gauthier, C. J.

10.1101/444349 — neuroscience — Posted on 2018-10-15

1569 Enhanced fitness relates to reduced cerebrovascular reactivity and perfusion in a sample of very healthy older adults

Intzandt, B.; Sabra, D.; Foster, C.; Desjardins-Crepeau, L.; Hoge, R. D.; Steele, C. J.; Bherer, L.; Gauthier, C. J.

10.1101/444208 — neuroscience — Posted on 2018-10-15

1570 Conserved allosteric pathways for activation of TRPV3 revealed through engineering vanilloid-sensitivity

Zhang, F.; Swartz, K. J.; Jara-Oseguera, A.

10.1101/443689 — neuroscience — Posted on 2018-10-15

1571 Molecular anatomy and plasticity of the long noncoding RNA HOTAIR

Spokoini-Stern, R.; Stamov, D.; Jessel, H.; Aharoni, L.; Haschke, H.; Giron, J.; Unger, R.; Segal, E.; Abu-Horowitz, A.; Bachelet, I.

10.1101/444331 — biophysics — Posted on 2018-10-15

1572 Root Anatomy based on Root Cross-Section Image Analysis with Deep Learning

Li, X.; Wang, C.; Caragea, D.; Jagadish, S. V. K.; Bheemanahalli, R.

10.1101/442244 — bioinformatics — Posted on 2018-10-15

1573 Brain-wide cellular resolution imaging of Cre transgenic zebrafish lines for functional circuit-mapping

Tabor, K. M.; Marquart, G. D.; Hurt, C.; Smith, T. S.; Geoca, A. K.; Bhandiwad, A. A.; Subedi, A.; Sinclair, J. L.; Polys, N. F.; Burgess, H. A.

10.1101/444075 — neuroscience — Posted on 2018-10-15

1574 Cell Mechanics at the Rear Act To Steer the Direction of Cell Migration

Allen, G. M.; Lee, K. C.; Barnhart, E. L.; Tsuchida, M. A.; Wilson, C. A.; Gutierrez, E.; Groisman, A.; Mogilner, A.; Theriot, J. A.

10.1101/443408 — cell biology — Posted on 2018-10-15

1575 The sequence dependent search mechanism of EcoRI

Price, A. C.; Loparo, J.; Piatt, S.

10.1101/444042 — biophysics — Posted on 2018-10-15

1576 MaxQuant.Live enables global targeting of more than 25,000 peptides

Wichmann, C.; Meier, F.; Virreira Winter, S.; Brunner, A.; Cox, J.; Mann, M.

10.1101/443838 — bioinformatics — Posted on 2018-10-15

1577 Degron tagging to label membrane-wrapped objects and probe membrane topology

Beer, K. B.; Fazeli, G.; Irmisch, L.; Wehman, A. M.

10.1101/442103 — cell biology — Posted on 2018-10-15

1578 A Composition-Dependent Molecular Clutch Between T Cell Signaling Clusters and Actin

Ditlev, J. A.; Vega, A. R.; Köster, D. V.; Su, X.; Lakoduk, A.; Vale, R. D.; Mayor, S.; Jaqaman, K.; Rosen, M. K.

10.1101/316414 — cell biology — Posted on 2018-10-15

1579 Base-pair Ambiguity and the Kinetics of RNA Folding

Zhou, G.; Loper, J.; Geman, S.

10.1101/329698 — bioinformatics — Posted on 2018-10-15

1580 ALS-linked SOD1 Mutants Enhance Outgrowth, Branching, and the Formation of Actin-Based Structures in Adult Motor Neurons

Osking, Z.; Ayers, J. I.; Hildebrandt, R.; Skruber, K.; Eukovich, A. R.; Brown, H.; Ryu, D.; Golde, T. E.; Borchelt, D. R.; Read, T.-A.; Vitriol, E. A.

10.1101/303271 — neuroscience — Posted on 2018-10-15

1581 The role of chromatin accessibility in cis-regulatory evolution

Peng, P.-C.; Khoueiry, P.; Girardot, C.; Reddington, J. P.; Garfield, D. A.; Furlong, E. E. M.; Sinha, S.

10.1101/319046 — evolutionary biology — Posted on 2018-10-15

1582 The Desmosome is a Mesoscale Lipid Raft-Like Membrane Domain

Lewis, J. D.; Caldara, A. L.; Zimmer, S. E.; Seybold, A.; Strong, N. L.; Stahley, S. N.; Frangakis, A. S.; Levental, I.; Wahl, J. K.; Mattheyses, A. L.; Sasaki, T.; Nakabayashi, K.; Hata, K.; Matsubara, Y.; Ishida-Yamamoto, A.; Amagai, M.; Kubo, A.; Kowalczyk, A. P.

10.1101/401455 — cell biology — Posted on 2018-10-15

1583 The Complete Chloroplast Genome of Dendrobium nobile, an endangered medicinal orchid from Northeast India and its comparison with related chloroplast genomes of Dendrobium species.

Konhar, R.; Debnath, M.; Bhattacharjee, A.; Sundar, D.; Tandon, P.; Dash, D.; Biswal, D. K.

10.1101/316778 — evolutionary biology — Posted on 2018-10-15

1584 Breakdown of gametophytic self-incompatibility in subdivided populations

Brom, T.; Castric, V.; Billiard, S.

10.1101/444125 — evolutionary biology — Posted on 2018-10-15

1585 Multi-reference spectral library yields almost complete coverage of heterogeneous LC-MS/MS data sets

Ammar, C.; Berchtold, E.; Csaba, G.; Schmidt, A.; Imhof, A.; Zimmer, R.

10.1101/180448 — bioinformatics — Posted on 2018-10-15

1586 Bud13 Promotes a Type I Interferon Response By Countering Intron Retention in Irf7

Frankiw, L. S.; Majumdar, D.; Burns, C.; Vlach, L.; Moradian, A.; Sweredoski, M.; Baltimore, D.

10.1101/443820 — molecular biology — Posted on 2018-10-15

1587 Persistence of microcystin production of Planktothrix agardhii exposed to different salinity concentrations.

VERGALLI, J.; COMBES, A.; FRANQUET, E.; FAYOLLE, S.; COMTE, K.

10.1101/444000 — microbiology — Posted on 2018-10-15

1588 Targeting MYC Overexpressing Leukemia with Cardiac Glycoside Proscillaridin Through Downregulation of Histone Acetyltransferases

Da Costa, E. M.; Armaos, G.; McInnes, G.; Beaudry, A.; Moquin-Beaudry, G.; Bertrand-Lehouillier, V.; Caron, M.; Richer, C.; St-Onge, P.; Johnson, J.; Krogan, N.; Sai, Y.; Downey, M.; Rafei, M.; Boileau, M.; Eppert, K.; Flores-Diaz, E.; Haman, A.; Hoang, T.; Sinnett, D.; Beausejour, C.; McGraw, S.; Raynal, N. J. M.

10.1101/444133 — pharmacology and toxicology — Posted on 2018-10-15

1589 Programmed Delayed Splicing: A Mechanism for Timed Inflammatory Gene Expression

Majumdar, D.; Frankiw, L.; Burns, C. H.; Garcia-Flores, Y.; Baltimore, D.

10.1101/443796 — immunology — Posted on 2018-10-15

1590 Lymph-Circulating Tumor Cells show distinct properties to Blood-Circulating Tumor Cells and constitute extraordinary efficient metastatic precursors

Mohammed, S. I.; Torres Luquis, O.; Walls, E. W.; Lloyd, F.

10.1101/444091 — cancer biology — Posted on 2018-10-15

1591 Using pan RNA-seq analysis to reveal the ubiquitous existence of 5′ end and 3′ end small RNAs

Xu, X.; Ji, H.; Cheng, Z.; Jin, X.; Yao, X.; Liu, Y.; Zhao, Q.; Zhang, T.; Ruan, J.; Bu, W.; Chen, Z.; Shan, G.

10.1101/444117 — bioinformatics — Posted on 2018-10-15

1592 Microridges are apical projections formed of branched F-actin networks that organize the glycan layer

Pinto, C. S.; Khandekar, A.; Rajasekaran, B.; Kiesel, P.; Pigino, G.; Sonawane, M.

10.1101/442871 — cell biology — Posted on 2018-10-15

1593 Microbial composition of enigmatic bird parasites: Wolbachia and Spiroplasma are the most important bacterial associates of quill mites (Acari: Syringophilidae)

Glowska, E.; Filutowska, Z. K.; Dabert, M.; Gerth, M.

10.1101/377218 — evolutionary biology — Posted on 2018-10-15

1594 Live-cell single-molecule analysis of β2-adrenergic receptor diffusion dynamics and confinement

Schwenzer, N.; Bussmann, H.; Franken, S.; Haeberlein, H.

10.1101/406488 — cell biology — Posted on 2018-10-15

1595 Non-functional and weak alleles of FRIGIDA and FLOWERING LOCUS C reduce lifetime water-use independent of leaf-level water-use-efficiency traits in Arabidopsis thaliana

Ferguson, J. N.; Meyer, R. C.; Edwards, K. D.; Humphry, M.; Brendel, O.; Bechtold, U.

10.1101/443424 — plant biology — Posted on 2018-10-15

1596 The within-subject application of diffusion tensor MRI and CLARITY reveals brain structural changes in Nrxn2 deletion mice

Pervolaraki, E.; Tyson, A. L.; Pibiri, F.; Poulter, S. L.; Reichelt, A. C.; Rodgers, R. J.; Clapcote, S. J.; Lever, C.; Andreae, L. C.; Dachtler, J.

10.1101/300806 — neuroscience — Posted on 2018-10-15

1597 An efficient and improved laboratory workflow and tetrapod database for larger scale eDNA studies

Axtner, J.; Crampton-Platt, A.; Hoerig, L. A.; Mohamed, A.; Xu, C. C. Y.; Yu, D. W.; Wilting, A.

10.1101/345082 — molecular biology — Posted on 2018-10-15

1598 Harnessing the Anti-Cancer Natural Product Nimbolide for Targeted Protein Degradation

Spradlin, J. N.; Hu, X.; Ward, C. C.; Brittain, S. M.; Ou, L.; Bussiere, D. E.; Thomas, J. R.; Tallarico, J. A.; McKenna, J. M.; Schirle, M.; Maimone, T. J.; Nomura, D. K.

10.1101/436998 — cancer biology — Posted on 2018-10-15

1599 Metatranscriptomic and thermodynamic insights into medium-chain fatty acid production using an anaerobic microbiome

Scarborough, M. J.; Lawson, C. E.; Hamilton, J. J.; Donohue, T. J.; Noguera, D. R.

10.1101/424762 — systems biology — Posted on 2018-10-15

1600 A grow-and-lock model for the control of flagellum length in trypanosomes

Bertiaux, E.; Morga, B.; Blisnick, T.; Rotureau, B.; Bastin, P.

10.1101/266759 — cell biology — Posted on 2018-10-15

1601 Bidirectional control of mitochondrial respiration and permeability transition pore by nitric oxide donors and L-arginine. Implication of mitochondrial NO/cGMP/PKG - signaling system

Dynnik, V. V.; Grishina, E. V.; Fedotcheva, N. I.

10.1101/443986 — biochemistry — Posted on 2018-10-15

1602 The development of individual differences in cooperative behaviour: maternal glucocorticoid hormones alter helping behaviour of offspring in wild meerkats

Dantzer, B.; Dubuc, C.; Braga Goncalves, I.; Cram, D. L.; Bennett, N. C.; Ganswindt, A.; Heistermann, M.; Duncan, C.; Gaynor, D.; Clutton-Brock, T. H.

10.1101/316182 — animal behavior and cognition — Posted on 2018-10-15

1603 The mRNA export adaptor Yra1 contributes to DNA double-strand break repair through its C-box domain

Infantino, V.; Tutucci, E.; Yeh Martin, N.; Zihlmann, A.; Garcia-Molinero, V.; Silvano, G.; Palancade, B.; Stutz, F.

10.1101/441980 — molecular biology — Posted on 2018-10-15

1604 RNA-Seq in 296 phased trios provides a high resolution map of genomic imprinting

Jadhav, B.; Monajemi, R.; Gagalova, K. K.; Ho, D.; Draisma, H. H. M.; van de Wiel, M. A.; Franke, L.; Heijmans, B. T.; van Meurs, J.; Jansen, R.; GoNL Consortium, ; BIOS Consortium, ; 't Hoen, P. A. C.; Sharp, A. J.; Kiełbasa, S. M.

10.1101/269449 — genomics — Posted on 2018-10-15

1605 A fully-automated, robust, and versatile algorithm for long-term budding yeast segmentation and tracking

Wood, N. E.

10.1101/444018 — cell biology — Posted on 2018-10-15

1606 Redundancy in the central tachykinin systems safeguards puberty onset and fertility

Leon, S.; Fergani, C.; Talbi, R.; Simavli, S.; Gerutshang, A.; Seminara, S.; Navarro, V. M.

10.1101/443333 — physiology — Posted on 2018-10-15

1607 The association between adiposity and inpatient hospital costs in the UK Biobank cohort

Dixon, P.; Davey Smith, G.; Hollingworth, W.

10.1101/399600 — epidemiology — Posted on 2018-10-15

1608 Intravascular arrest of circulating tumor cells is a two-step process exploiting their adhesion repertoire.

Osmani, N.; Follain, G.; Garcia-Leon, M. J.; Lefebvre, O.; Harlepp, S.; GOETZ, J. G.

10.1101/443374 — cancer biology — Posted on 2018-10-15

1609 Continuous and bolus intraventricular topotecan prolong survival in a mouse model of leptomeningeal medulloblastoma

Shackleford, G. M.; Mahdi, M.; Moats, R. A.; Hawes, D.; Tran, H. C.; Hoang, T.; Meng, E.; Erdreich-Epstein, A.

10.1101/443994 — cancer biology — Posted on 2018-10-15

1610 Compressing Streams of Phylogenetic Trees

Trefzer, A.; Stamatakis, A.

10.1101/440644 — bioinformatics — Posted on 2018-10-15

1611 Electrophilic PROTACs that degrade nuclear proteins by engaging DCAF16

Zhang, X.; Crowley, V. M.; Wucherpfennig, T. G.; Dix, M. M.; Cravatt, B. F.

10.1101/443804 — biochemistry — Posted on 2018-10-15

1612 Olfactory object recognition based on fine-scale stimulus timing in Drosophila

Sehdev, A.; Mohammed, Y. G.; Triphan, T.; Szyszka, P.

10.1101/418632 — animal behavior and cognition — Posted on 2018-10-15

1613 The effect of butyrate-supplemented parenteral nutrition on intestinal defence mechanisms and the parenteral nutrition-induced shift in the gut microbiota

Jirsova, Z.; Heczkova, M.; Dankova, H.; Malinska, H.; Videnska, P.; Vespalcova, H.; Micenkova, L.; Bartonova, L.; Sticova, E.; Lodererova, A.; Prefertusova, L.; Sekerkova, A.; Cahova, M.

10.1101/443978 — physiology — Posted on 2018-10-15

1614 Identification of a simple and novel cut-point based CSF and MRI signature for predicting Alzheimer disease progression that reinforces the 2018 NIA-AA research framework

Devanarayan, P.; Devanarayan, V.; Llano, D. A.

10.1101/443325 — neuroscience — Posted on 2018-10-15

1615 Individuals with 22q11.2 deletion syndrome show intact prediction but reduced adaptation in responses to repeated sounds: evidence from Bayesian mapping

Larsen, K. M.; Moerup, M.; Birknow, M.; Fischer, E.; Olsen, L.; Didriksen, M.; Baare, W. F. C.; Werge, T.; Garrido, M. I.; Siebner, H. R.

10.1101/441634 — neuroscience — Posted on 2018-10-15

1616 Gut microbiota has a widespread and modifiable effect on host gene regulation

Richards, A.; Muehlbauer, A. L.; Alazizi, A.; Burns, M. B.; Findley, A.; Messina, F.; Gould, T. J.; Cascardo, C.; Pique-Regi, R.; Blekhman, R.; Luca, F.

10.1101/210294 — genomics — Posted on 2018-10-15

1617 Transitions in paternal dominance regulate offspring growth and metabolic transcription

Cauceglia, J. W.; Nelson, A. C.; Rubinstein, N. D.; Kukreja, S.; Sasso, L. N.; Beaufort, J. A.; Rando, O. J.; Potts, W. K.

10.1101/443317 — evolutionary biology — Posted on 2018-10-15

1618 Opioids trigger breast cancer metastasis through E-Cadherin downregulation and STAT3 activation promoting epithelial mesenchymal transition

Tripolt, S.; Knab, V. M.; Neubauer, H. A.; Elmer, D. P.; Aberger, F.; Moriggl, R.; Fux, D. A.

10.1101/443663 — cancer biology — Posted on 2018-10-15

1619 An application of higher order multivariate cumulants in modelling of myoelectrical activity of porcine uterus during early pregnancy.

Domino, M.; Domino, K.; Gajewski, Z.

10.1101/443564 — bioinformatics — Posted on 2018-10-15

1620 Mitochondria-Associated Membranes (MAMs) are involved in Bax mitochondrial localization and cytochrome c release

Legiot, A.; Cere, C.; Dupoiron, T.; Kaabouni, M.; Manon, S.

10.1101/443606 — biochemistry — Posted on 2018-10-15

1621 MxB restricts HIV-1 by targeting the tri-hexamer interface of the viral capsid

Smaga, S. S.; Xu, C.; Summers, B. J.; Digianantonio, K. M.; Perilla, J. R.; Xiong, Y.

10.1101/444067 — biochemistry — Posted on 2018-10-15

1622 A Computational Framework To Assess Genome-Wide Distribution Of Polymorphic Human Endogenous Retrovirus-K In Human Populations

Li, W.; Lin, L.; Malhotra, R.; Yang, L.; Acharya, R.; Poss, M.

10.1101/444034 — genomics — Posted on 2018-10-15

1623 Hypomorphic mutation of the mouse Huntingtons disease gene orthologue

Murthy, V.; Tebaldi, T.; Yoshida, T.; Erdin, S.; Calzonetti, T.; Vijayvargia, R.; Tripathi, T.; Kerschbamer, E.; Seong, I. S.; Quattrone, A.; Talkowski, M. E.; Gusella, J. F.; Georgopoulos, K.; MacDonald, M. E.; Biagioli, M.

10.1101/444059 — genetics — Posted on 2018-10-15

1624 Diversity and population genetic structure of the wax palm Ceroxylon quindiuense in the Colombian Coffee Region

Gonzalez-Rivillas, N.; Bohorquez, A.; Gutierrez, J. P.; Garcia Merchan, V. H.

10.1101/443960 — genetics — Posted on 2018-10-15

1625 4D imaging and analysis of multicellular tumour spheroid cell migration and invasion

Richards, R.; Mason, D.; Levy, R.; Bearon, R.; See, V.

10.1101/443648 — cell biology — Posted on 2018-10-15

1626 A cellular anatomy of the normal adult human prostate and prostatic urethra

Henry, G. H.; Malewska, A.; Joseph, D. B.; Malladi, V. S.; Lee, J.; Torrealba, J.; Mauck, R. J.; Gahan, J. C.; Raj, G. V.; Roehrborn, C. G.; Hon, G. C.; Macconmara, M. P.; Reese, J. C.; Hutchinson, R. C.; Vezina, C. M.; Strand, D. W.

10.1101/439935 — cell biology — Posted on 2018-10-15

1627 An intrinsic neural eye tracker in primary visual cortex

Morris, A. P.; Krekelberg, B.

10.1101/443507 — neuroscience — Posted on 2018-10-15

1628 Genetic control of variability in subcortical and intracranial volumes

Cordova-Palomera, A.; Meer, D. v. d.; Kaufmann, T.; Bettella, F.; Wang, Y.; Alnaes, D.; Doan, N. T.; Agartz, I.; Bertolino, A.; Buitelaar, J. K.; Coynel, D.; Djurovic, S.; Dorum, E. S.; Espeseth, T.; Fazio, L.; Franke, B.; Frei, O.; Haberg, A.; Le Hellard, S.; Jonsson, E. G.; Kolskar, K. K.; Lund, M. J.; Moberget, T.; Nordvik, J. E.; Nyberg, L.; Papassotiropoulos, A.; Pergola, G.; de Quervain, D.; Rampino, A.; Richard, G.; Rokicki, J.; Sanders, A.-M.; Schwarz, E.; Smeland, O. B.; Steen, V. M.; Starrfelt, J.; Sonderby, I. E.; Ulrichsen, K. M.; Andreassen, O. A.; Westlye, L. T.

10.1101/443549 — neuroscience — Posted on 2018-10-15

1629 Adaptive disinhibitory gating by VIP interneurons permits associative learning

Krabbe, S.; Paradiso, E.; d'Aquin, S.; Bitterman, Y.; Xu, C.; Yonehara, K.; Markovic, M.; Gruendemann, J.; Ferraguti, F.; Luthi, A.

10.1101/443614 — neuroscience — Posted on 2018-10-15

1630 Attention explores space periodically at the theta frequency

Senoussi, M.; Moreland, J. C.; Busch, N. A.; Dugue, L.

10.1101/443341 — neuroscience — Posted on 2018-10-15

1631 Deep structural brain lesions associated with consciousness impairment early after haemorrhagic stroke

Rohaut, B.; Doyle, K. W.; Reynolds, A. S.; Igwe, K.; Couch, C.; Matory, A.; Rizvi, B.; Roh, D.; Velasquez, A.; Megjhani, M.; Park, S.; Agarwal, S.; Mauro, C. M.; Li, G.; Eliseyev, A.; Perlbarg, V.; Connolly, S. E.; Brickman, A.; Claassen, J.

10.1101/441709 — neuroscience — Posted on 2018-10-15

1632 Long-range phase synchronization of high-gamma activity in human cortex

Arnulfo, G.; Wang, S.; Williams, N.; Hirvonen, J.; Fato, M.; Nobili, L.; Cardinale, F.; Rubino, A.; Zhigalov, A.; Palva, S.; Palva, J.

10.1101/442251 — neuroscience — Posted on 2018-10-15

1633 Characterisation of the faecal virome of captive and wild Tasmanian devils using virus-like particles metagenomics and meta-transcriptomics

Chong, R.; Shi, M.; Grueber, C. E.; Holmes, E. C.; Hogg, C.; Belov, K.; Barrs, V. R.

10.1101/443457 — molecular biology — Posted on 2018-10-15

1634 Hopanoid composition mediates bacterial ethanol tolerance

Budin, I.; Brenac, L.; Baidoo, E.; Keasling, J. D.

10.1101/443473 — microbiology — Posted on 2018-10-15

1635 Genome structure and evolution of Antirrhnum majus L.

LI, M.; Zhang, D.; Zhang, H.; Gao, Q.; Ma, B.; Chen, C.; Luo, Y.; Cao, Y.; Li, Q.; Zhang, Y.-e.; Guo, H.; Li, J.; Song, Y.; Zhang, Y.; Copsey, L.; Whibley, A.; Li, Y.; Qi, M.; Wang, J.; Chen, Y.; Wang, D.; Zhao, J.; Liu, G.; Wu, B.; Yu, L.; Xu, C.; Li, J.; Zhao, S.; Zhang, Y.; Hu, S.; Liang, C.; Yin, Y.; Coen, E.; Xue, Y.

10.1101/443515 — genomics — Posted on 2018-10-15

1636 Simultaneous Deletion of Transient Receptor Potential Vanilloid 3 and Cacna1h Undermines Ca2+ Homeostasis in Oocytes and Fertility in Mice

Mehregan, A.; Ardestani, G.; Carvacho, I.; Fissore, R.

10.1101/443622 — developmental biology — Posted on 2018-10-15

1637 Bayesian inference of transcriptional branching identifies regulators of early germ cell development in humans

Penfold, C. A.; Sybirna, A.; Reid, J.; Castillo Venzor, A.; Drousioti, E.; Huang, Y.; Grant, M.; Wernisch, L.; Ghahramani, Z.; Surani, M. A.

10.1101/167684 — developmental biology — Posted on 2018-10-15

1638 On statistical tests of functional connectome fingerprinting

Wang, Z.; Sair, H.; Crainiceanu, C.; Lindquist, M.; Landman, B. A.; Resnick, S.; Vogelstein, J. T.; Caffo, B. S.

10.1101/443556 — neuroscience — Posted on 2018-10-15

1639 The genetics of morphological and behavioral island traits in deer mice

Baier, F.; Hoekstra, H. E.

10.1101/443432 — evolutionary biology — Posted on 2018-10-15

1640 Dissection of protonation sites for antibacterial recognition and transport in QacA, a multi-drug efflux transporter.

Majumder, P.; Khare, S.; Athreya, A.; Hussain, N.; Gulati, A.; Penmatsa, A.

10.1101/443523 — biochemistry — Posted on 2018-10-15

1641 Blended Bioinformatics Training in Resource-Limited Settings: A case study of challenges and opportunities for implementation

Ahmed, A. E.; Awadallah, A. A.; Tagelsir, M. T.; Suliman, M. A.; Khalil, A. E.; Elsafi, H. M.; Hamdelnile, B. D.; Abdullatif, M.; Fadlelmola, F. M.

10.1101/431361 — scientific communication and education — Posted on 2018-10-14

1642 Structural variants identified by Oxford Nanopore PromethION sequencing of the human genome

De Coster, W.; De Roeck, A.; De Pooter, T.; D'Hert, S.; De Rijk, P.; Strazisar, M.; Sleegers, K.; Van Broeckhoven, C.

10.1101/434118 — bioinformatics — Posted on 2018-10-14

1643 The interplay of synaptic plasticity and scaling enables the self-organized allocation of multiple memory representations

Auth, J. M.; Nachstedt, T.; Tetzlaff, C.

10.1101/260950 — neuroscience — Posted on 2018-10-14

1644 Behavioral state-dependent lateralization of dorsal dentate gyrus c-Fos expression in mice

Jordan, J. T.; Pytte, C. L.

10.1101/214239 — neuroscience — Posted on 2018-10-14

1645 Fibroblasts and Alectinib switch the evolutionary games played by non-small cell lung cancer

Kaznatcheev, A.; Peacock, J.; Basanta, D.; Marusyk, A.; Scott, J. G.

10.1101/179259 — cancer biology — Posted on 2018-10-14

1646 Bayesian Inference for a Generative Model of Transcriptome Profiles from Single-cell RNA Sequencing

Lopez, R.; Regier, J.; Cole, M. B.; Jordan, M. I.; Yosef, N.

10.1101/292037 — bioinformatics — Posted on 2018-10-14

1647 Non-canonical role of STAT2 and IRF9 in the regulation of a STAT1-independent antiviral and immunoregulatory transcriptional program induced by IFNβ and TNFα

Mariani, M.; Dasmeh, P.; Fortin, A.; Caron, E.; Kalamujic, M.; Harrison, A. N.; Kasumba, D. M.; Cervantes-Ortiz, S.; Mukawera, E.; Serohijos, A. W. R.; Grandvaux, N.

10.1101/273623 — immunology — Posted on 2018-10-14

1648 Process-specific somatic mutation distributions vary with three-dimensional genome structure

Akdemir, K. C.; Le, V. T.; Killcoyne, S.; King, D. A.; Lin, Y.-P.; Tian, Y.; Inoue, A.; Amin, S.; Robinson, F. S.; Herrera, R. E.; Lynn, E. J.; Chan, K.; Seth, S.; Klimczak, L. J.; Gerstung, M.; Gordenin, D. A.; O'Brien, J.; Li, L.; Verhaak, R. G.; Campbell, P.; Fitzgerald, R.; Morrison, A. J.; Dixon, J. R.; Futreal, A.

10.1101/426080 — genomics — Posted on 2018-10-14

1649 Multi-omic tumor data reveal diversity of molecular mechanisms that correlate with survival

Ramazzotti, D.; Lal, A.; Wang, B.; Batzoglou, S.; Sidow, A.

10.1101/267245 — cancer biology — Posted on 2018-10-14

1650 Identifying accurate metagenome and amplicon software via a meta-analysis of sequence to taxonomy benchmarking studies

Gardner, P. P.; Watson, R. J.; Morgan, X. C.; Draper, J. L.; Finn, R. D.; Morales, S. E.; Stott, M. B.

10.1101/202077 — bioinformatics — Posted on 2018-10-14

1651 Transcriptome-wide association studies: opportunities and challenges

Wainberg, M.; Sinnott-Armstrong, N.; Mancuso, N.; Barbeira, A. N.; Knowles, D.; Golan, D.; Ermel, R.; Ruusalepp, A.; Quertermous, T.; Hao, K.; Bjorkegren, J. L. M.; Im, H. K.; Pasaniuc, B.; Rivas, M. A.; Kundaje, A.

10.1101/206961 — genetics — Posted on 2018-10-14

1652 Robust Estimation of the Phylogenetic Origin of Plastids Using a tRNA-Based Phyloclassifier

Lawrence, T. J.; Amrine, K. C. H.; Swingley, W. D.; Ardell, D. H.

10.1101/442608 — evolutionary biology — Posted on 2018-10-14

1653 Study of the action of lactic acid bacteria on acrylamide in food products

Surana, P.; Singh, S.; Manokaran, S.; Reddy, M. A.

10.1101/432898 — biochemistry — Posted on 2018-10-14

1654 Drosophila melanogaster infected with Wolbachia strain wMelCS prefer cooler temperatures

Arnold, P. A.; Levin, S. C.; Stevanovic, A. L.; Johnson, K. N.

10.1101/352872 — pathology — Posted on 2018-10-14

1655 Multiscale Adaptive Gabor Expansion (MAGE): Improved Detection of Transient Oscillatory Burst Amplitude and Phase

Canolty, R. T.; Womelsdorf, T.

10.1101/369116 — neuroscience — Posted on 2018-10-14

1656 Finding structure in multi-armed bandits

Schulz, E.; Franklin, N. T.; Gershman, S. J.

10.1101/432534 — animal behavior and cognition — Posted on 2018-10-14

1657 LPM: a latent probit model to characterize the relationship among complex traits using summary statistics from multiple GWASs and functional annotations

Ming, J.; Wang, T.; Yang, C.

10.1101/439133 — genetics — Posted on 2018-10-14

1658 Differential immune gene expression associated with contemporary range expansion of two invasive rodents in Senegal

Charbonnel, N.; Galan, M.; Tatard, C.; Loiseau, A.; Diagne, C. A.; Dalecky, A.; Parinello, H.; Rialle, S.; Severac, D.; Brouat, C.

10.1101/442160 — ecology — Posted on 2018-10-14

1659 Dynamics of spontaneous alpha activity correlate with language ability in young children

Kwok, E.; oram cardy, j.; Allman, B. L.; Allen, P.; Herrmann, B.

10.1101/443192 — neuroscience — Posted on 2018-10-14

1660 The effects of training population design on genomic prediction accuracy in wheat

McKinnon Edwards, S.; Buntjer, J. B.; Jackson, R.; Bentley, A. R.; Lage, J.; Byrne, E.; Burt, C.; Jack, P.; Berry, S.; Flatman, E.; Poupard, B.; Smith, S.; Hayes, C.; Gaynor, R.; Gorjanc, G.; Howell, P.; Ober, E.; Mackay, I. J.; Hickey, J. M.

10.1101/443267 — genetics — Posted on 2018-10-14

1661 A multi-parent recombinant inbred line population of Caenorhabditis elegans enhances mapping resolution and identification of novel QTLs for complex life-history traits

Snoek, B. L.; Volkers, R. J. M.; Nijveen, H.; Petersen, C.; Dirksen, P.; Sterken, M. G.; Nakad, R.; Riksen, J.; Rosenstiel, P.; Stastna, J. J.; Braeckman, B. P.; Harvey, S. C.; Schulenburg, H.; Kammenga, J. E.

10.1101/443135 — genetics — Posted on 2018-10-14

1662 A novel signature derived from immunoregulatory and hypoxia genes predicts prognosis in liver and five other cancers

Chang, W. H.; Forde, D.; Lai, A. G.

10.1101/442921 — cancer biology — Posted on 2018-10-14

1663 Affectively-biased Competition Favoring Rewarding Expressions is Not Modulated by Common Variation in Norepinephrine Receptor Function

Roberts, K. H.; Manaligod, M. G. M.; Ross, C. J. D.; Mueller, D. J.; Wieser, M. J.; Todd, R. M.

10.1101/442863 — neuroscience — Posted on 2018-10-14

1664 DNA and RNA binding mediate the toxicity of arginine-rich peptides encoded by C9ORF72 GGGGCC repeats

Lafarga, V.; Sirozh, O.; Diaz-Lopez, I.; Hisaoka, M.; Zarzuela, E.; Boskovic, J.; Jovanovic, B.; Fernandez-Leiro, R.; Munoz, J.; Stoecklin, G.; Ventoso, I.; Fernandez-Capetillo, O.

10.1101/441808 — neuroscience — Posted on 2018-10-14

1665 A framework for space-efficient variable-order Markov models

Cunial, F.; Alanko, J.; Belazzougui, D.

10.1101/443101 — bioinformatics — Posted on 2018-10-14

1666 Differential generation of saccade, fixation and image onset event-related potentials in the human mesial temporal lobe

Katz, C.; Patel, K.; Talakoub, O.; Groppe, D.; Hoffman, K.; Valiante, T. A.

10.1101/442855 — neuroscience — Posted on 2018-10-14

1667 Measurement of the Topological Dimension of Hippocampal Place Cell Activity

Fox, S. E.; Ranck, J. B.

10.1101/442905 — neuroscience — Posted on 2018-10-14

1668 Optimal evidence accumulation on social networks

Karamched, B.; Stolarczyk, S.; Kilpatrick, Z.; Josic, K.

10.1101/442848 — neuroscience — Posted on 2018-10-14

1669 Screening performance of abbreviated versions of the UPSIT smell test

Joseph, T.; Auger, S. D.; Peress, L.; Rack, D.; Cuzick, J.; Giovannoni, G.; Lees, A.; Schrag, A. E.; Noyce, A. J.

10.1101/443127 — neuroscience — Posted on 2018-10-14

1670 Hippocampal State Transitions at the Boundaries between Trial Epochs

Bulkin, D. A.; Sinclair, D. G.; Law, L. M.; Smith, D. M.

10.1101/443077 — neuroscience — Posted on 2018-10-14

1671 The influenza A virus endoribonuclease PA-X usurps host mRNA processing machinery to limit host gene expression

Gaucherand, L.; Porter, B. K.; Schmaling, S. K.; Rycroft, C. H.; Kevorkian, Y.; McCormick, C.; Khaperskyy, D. A.; Gaglia, M.

10.1101/442996 — microbiology — Posted on 2018-10-14

1672 Metatranscriptome profiling of the dynamic transcription of mRNA and sRNA of a probiotic Lactobacillus strain in human gut

He, Q.; sun, z.; Qiao, J.; Chen, D.; Huang, J.; Luo, X.; Ding, J.; Zhang, J.; Hou, Q.; Zhang, Y.; Zhang, H.

10.1101/442673 — microbiology — Posted on 2018-10-14

1673 The Cuon Enigma: Genome survey and comparative genomics of the endangered Dhole (Cuon alpinus)

Habib, B.; Ghaskadbi, P.; Nigam, P.; Modi, S.; Kumar, P. S.; Sharma, K.; Singh, V.; Kumar, B.; Tripathi, A.; Kothandaraman, H.; Yellaboina, S.; Baghel, D. S.; Mondol, S.

10.1101/443119 — genomics — Posted on 2018-10-14

1674 On the unfounded enthusiasm for soft selective sweeps II: examining recent evidence from humans, flies, and viruses

Harris, R.; Sackman, A.; Jensen, J. D.

10.1101/443051 — evolutionary biology — Posted on 2018-10-14

1675 CANDOCK: Chemical atomic network based hierarchical flexible docking algorithm using generalized statistical potentials

Fine, J. A.; Konc, J.; Samudrala, R.; Chopra, G.

10.1101/442897 — biophysics — Posted on 2018-10-14

1676 Designing metabolic division of labor in microbial communities

Thommes, M.; Wang, T.; Zhao, Q.; Paschalidis, I. C.; Segre, D.

10.1101/442376 — systems biology — Posted on 2018-10-14

1677 A flexible and generalizable model of online latent-state learning

Cochran, A. L.; Cisler, J. M.

10.1101/443234 — neuroscience — Posted on 2018-10-14

1678 Bursts and variability of beta oscillations mediate the effect of anxiety on motor exploration and motor learning

Sporn, S.; Hein, T.; Herrojo Ruiz, M. d. C.

10.1101/442772 — neuroscience — Posted on 2018-10-14

1679 Synaptic circuits for irradiance coding by intrinsically photosensitive retinal ganglion cells

Sabbah, S.; Papendorp, C.; Koplas, E.; Beltoja, M.; Etebari, C.; Gunesch, A. N.; Carrete, L.; Kim, M. T.; Manoff, G.; Bhatia-Lin, A.; Zhao, T.; Schreck, D.; Dowling, H.; Briggman, K. L.; Berson, D. M.

10.1101/442954 — neuroscience — Posted on 2018-10-14

1680 Mis-perception of motion in depth originates from an incomplete transformation of retinal signals

Murdison, T. S.; Leclercq, G.; Lefevre, P.; Blohm, G.

10.1101/443218 — neuroscience — Posted on 2018-10-14

1681 I knew that! Confidence in outcome prediction and its impact on feedback processing and learning

Froemer, R.; Nassar, M. R.; Stuermer, B.; Sommer, W.; Yeung, N.

10.1101/442822 — neuroscience — Posted on 2018-10-14

1682 The landscape of intrinsic and evolved fluoroquinolone resistance in Acinetobacter baumannii includes suppression of drug-induced prophage replication

Geisinger, E.; Vargas-Cuebas, G.; Mortman, N. J.; Syal, S.; Wainwright, E.; Lazinski, D. W.; Wood, S.; Zhu, Z.; Anthony, J.; van Opijnen, T.; Isberg, R. R.

10.1101/442681 — microbiology — Posted on 2018-10-14

1683 Robust Estimation of the Phylogenetic Origin of Plastids Using a tRNA-Based Phyloclassifier

Lawrence, T.; Amrine, K. C. H.; Swingley, W. D.; Ardell, D. H.

10.1101/442608 — evolutionary biology — Posted on 2018-10-14

1684 Deep Recurrent Attention Models for Histopathological Image Analysis

Momeni, A.; Thibault, M.; Gevaert, O.

10.1101/438341 — bioinformatics — Posted on 2018-10-14

1685 Social isolation-induced epigenetic and transcriptional changes in Drosophila dopaminergic neurons

Agrawal, P.; Chung, P.; Heberlein, U.; Kent, C. F.

10.1101/443226 — neuroscience — Posted on 2018-10-14

1686 Prognostic signatures of oxygen-sensing genes predict patient survival in ten cancers including those of the liver, pancreas and stomach

Chang, W. H.; Forde, D.; Lai, A. G.

10.1101/442947 — cancer biology — Posted on 2018-10-14

1687 BitMapperBS: a fast and accurate read aligner for whole-genome bisulfite sequencing

Cheng, H.; Xu, Y.

10.1101/442798 — bioinformatics — Posted on 2018-10-14

1688 Novel Methods for Epistasis Detection in Genome-Wide Association Studies

Slim, L.; Chatelain, C.; Azencott, C.-A.; Vert, J.-P.

10.1101/442749 — bioinformatics — Posted on 2018-10-14

1689 Comparison between QST and ΦST indices in an endangered Boswellia serrata Roxb: Implications for conservation

Mahesh, S.; Kumar, P.; Vaishnav, V.; Mohammad, N.; Ansari, S. A.

10.1101/442723 — genetics — Posted on 2018-10-14

1690 Mutually exclusive locales for N-linked glycans and disorder in glycoproteins

Singh, A.; Kumari, I.; Pally, D.; Goutham, S.; Ghosh, S.; Akhter, Y.; Bhat, R.

10.1101/443143 — bioinformatics — Posted on 2018-10-14

1691 Tissue-specific genes as an underutilized resource in drug discovery

Ryaboshapkina, M.; Hammar, M.

10.1101/442780 — bioinformatics — Posted on 2018-10-14

1692 Microplate Assay for Denatured Collagen using CollagenHybridizing Peptides

Lin, A. H.; Zitnay, J. L.; Li, Y.; Yu, M.; Weiss, J. A.

10.1101/443242 — bioengineering — Posted on 2018-10-14

1693 A robust nonlinear low-dimensional manifold for single cell RNA-seq data

Verma, A.; Engelhardt, B.

10.1101/443044 — genomics — Posted on 2018-10-14

1694 Components of genetic associations across 2,138 phenotypes in the UK Biobank highlight novel adipocyte biology

Tanigawa, Y.; Li, J.; Justesen, J. M.; Horn, H.; Aguirre, M.; DeBoever, C.; Chang, C.; Narasimhan, B.; Lage, K.; Hastie, T. J.; Park, C. Y.; Bejerano, G.; Ingelsson, E.; Rivas, M.

10.1101/442715 — genetics — Posted on 2018-10-14

1695 Interfacial actin protrusions mechanically potentiate killing by cytotoxic T cells

Tamzalit, F.; Wang, M. S.; Jin, W.; Boyko, V.; Heddleston, J. M.; Black, C. T.; Kam, L. C.; Huse, M.

10.1101/443309 — immunology — Posted on 2018-10-14

1696 DNA damage dependent hypomethylation regulates the pro-angiogenic LncRNA MEG9

Espinosa-Diez, C.; Wilson, R.; Mukherjee, R.; Feltham, M.; Hudson, C.; Ruhl, R.; Anand, S.

10.1101/442699 — cell biology — Posted on 2018-10-14

1697 A role for long-range, through-lattice coupling in microtubule catastrophe

Kim, T.; Rice, L. M.

10.1101/443283 — cell biology — Posted on 2018-10-14

1698 Cryo-EM structures of the DCPIB-inhibited volume-regulated anion channel LRRC8A in lipid nanodiscs

Kern, D. M.; Oh, S.; Hite, R. K.; Brohawn, S. G.

10.1101/442459 — neuroscience — Posted on 2018-10-14

1699 ADAR2-mediated Q/R editing of GluK2 regulates kainate receptor upscaling in response to suppression of synaptic activity

Gurung, S.; Evans, A.; Wilkinson, K.; Henley, J.

10.1101/443010 — neuroscience — Posted on 2018-10-14

1700 Asi1 regulates the distribution of proteins at the inner nuclear membrane in Saccharomyces cerevisiae

Smoyer, C. J.; Smith, S. E.; McCroskey, S.; Unruh, J.; Jaspersen, S. L.

10.1101/442970 — cell biology — Posted on 2018-10-14

1701 Intricate structure of the interphase chromocenter revealed by the analysis of a factor involved in species formation

Kochanova, N.; Schauer, T.; Mathias, G. P.; Lukacs, A.; Schmidt, A.; Flatley, A.; Schepers, A.; Thomae, A. W.; Imhof, A.

10.1101/441675 — biochemistry — Posted on 2018-10-14

1702 Rapid covalent-probe discovery by electrophile fragment screening

resnick, e.; Bradley, A.; Gan, J.; Douangamath, A.; Krojer, T.; Sethi, R.; Aimon, A.; Amitai, G.; Belini, D.; Bennett, J.; Fairhead, M.; Fedorov, O.; Geurink, P. P.; Guo, J.; Plotnikov, A.; Reznik, N.; Ruda, G. F.; Diaz Saez, L.; Straub, V. M.; Szommer, T.; Velupillai, r.; Zaidman, D.; Coker, A. R.; Dowson, C. G.; Barr, H.; Huber, K. V. M.; Brennan, P. E.; Ovaa, H.; von Delft, F.; London, N.

10.1101/442806 — biochemistry — Posted on 2018-10-14

1703 The whale shark genome reveals how genomic and physiological properties scale with body size

Park, S. G.; Luria, V.; Weber, J. A.; Jeon, S.; Kim, H.-M.; Jeon, Y.; Bhak, Y.; Jun, J.; Kim, S. W.; Hong, W. H.; Lee, S.; Cho, Y. S.; Karger, A.; Cain, J. W.; Manica, A.; Kim, S.; Kim, J.-H.; Edwards, J. S.; Bhak, J.; Church, G. M.

10.1101/443036 — genomics — Posted on 2018-10-14

1704 Generalizing clusters of similar species as a signature of coexistence under competition

D'Andrea Rocha, R.; Riolo, M.; Ostling, A. M.

10.1101/264606 — ecology — Posted on 2018-10-13

1705 Structural variability of EspG chaperones from mycobacterial ESX-1, ESX-3 and ESX-5 type VII secretion systems

Tuukkanen, A. T.; Freire, D.; Chan, S.; Arbing, M. A.; Reed, R. W.; Evans, T. J.; Zenkeviciute, G.; Kim, J.; Kahng, S.; Sawaya, M. R.; Chaton, C. T.; Wilmanns, M.; Eisenberg, D.; Parret, A. H. A.; Korotkov, K. V.

10.1101/250803 — biochemistry — Posted on 2018-10-13

1706 Multi-context blind source separation by error-gated Hebbian rule

Isomura, T.; Toyoizumi, T.

10.1101/441618 — neuroscience — Posted on 2018-10-13

1707 Periplasmic protein EipA determines envelope stress resistance and virulence in Brucella abortus

Herrou, J.; Willett, J.; Fiebig, A.; Varesio, L.; Czyz, D.; Cheng, J.; Ultee, E.; Briegel, A.; Bigelow, L.; Babnigg, G.; Kim, Y.; Crosson, S.

10.1101/442541 — microbiology — Posted on 2018-10-13

1708 Telomeric dysfunction triggers an unstable growth arrest leading to irreparable genomic lesions and entry into cellular senescence

Ghadaouia, S.; Olivier, M.-A.; Martinez, A.; Malaquin, N.; Cardin, G. B.; Rodier, F.

10.1101/442533 — cell biology — Posted on 2018-10-13

1709 A Diverse Range of Factors Affect the Nature of Neural Representations Underlying Short-Term Memory

Orhan, E.; Ma, W. J.

10.1101/244707 — neuroscience — Posted on 2018-10-13

1710 Crop Information Engine and Research Assistant (CIERA) for managing genealogy, phenotypic and genotypic data for breeding programs

Yates, S.; Lague, M.; Knox, R.; Cuthbert, R.; Clarke, F.; Clarke, J.; Ruan, Y.; Sangha, J.; Bhadauria, V.

10.1101/439505 — bioinformatics — Posted on 2018-10-13

1711 A Double Error Dynamic Asymptote Model of Associative Learning

Kokkola, N. H. B.; Mondragon, E.; Alonso, E.

10.1101/210674 — animal behavior and cognition — Posted on 2018-10-13

1712 Arabidopsis species deploy distinct strategies to cope with drought stress

Bouzid, M.; He, F.; Schmitz, G.; Haeusler, R.; Weber, A.; Mettler, T.; de Meaux, J.

10.1101/341859 — plant biology — Posted on 2018-10-13

1713 Seasonal changes in diet and toxicity in the Climbing Mantella frog (Mantella laevigata)

Moskowitz, N. A.; Roland, A. B.; Fischer, E. K.; Ranaivorazo, N.; Vidoudez, C.; Aguilar, M. T.; Caldera, S. M.; Chea, J.; Cristus, M. G.; Crowdis, J. P.; DeMessie, B.; Desjardins-Park, C. R.; Effenberger, A. H.; Flores, F.; Giles, M.; He, E. Y.; Izmaylov, N. S.; Lee, C. C.; Pagel, N. A.; Phu, K. K.; Rosen, L. U.; Seda, D. A.; Shen, Y.; Vargas, S.; Murray, A. W.; Abebe, E.; Trauger, S. A.; Donoso, D. A.; Vences, M.; O'Connell, L. A.

10.1101/361998 — ecology — Posted on 2018-10-13

1714 Using the Wax moth larva Galleria mellonella infection model to detect emerging bacterial pathogens

Hernandez, R.; Hesse, E.; Dowling, A.; Coyle, N.; Feil, E.; Gaze, W.; Vos, M.

10.1101/327015 — microbiology — Posted on 2018-10-13

1715 Metabolomic signature of angiopoietin-like protein 3 deficiency in fasting and postprandial state

Tikkanen, E.; Minicocci, I.; Hallfors, J.; Di Costanzo, A.; Erasmo, L.; Poggiogalle, E.; Donini, L.; Wurtz, P.; Jauhiainen, M.; Olkkonen, V.; Arca, M.

10.1101/441857 — genetics — Posted on 2018-10-13

1716 Alkaline ceramidase catalyzes the hydrolysis of ceramides via a catalytic mechanism shared by Zn2+-dependent amidases

Yi, J. K.; Xu, R.; Obeid, L. M.; Hannun, Y. A.; Airola, M. V.; Mao, C.

10.1101/442202 — biochemistry — Posted on 2018-10-13

1717 Deriving C4 photosynthesis parameters by fitting intensive A/Ci curves

Zhou, H.; Akcay, E.; Helliker, B.

10.1101/153072 — plant biology — Posted on 2018-10-13

1718 Biofilm Structures of Borrelia burgdorferi Not Only Display More Tolerance to Lyme Antibiotics But Also Cause More Severe Pathology In a Mouse Arthritis Model: Implications for Understanding Persistence, PTLDS, and Treatment Failure

Feng, J.; Li, T.; Zhang, Y.

10.1101/440461 — microbiology — Posted on 2018-10-13

1719 Measuring the average power of neural oscillations

Izhikevich, L.; Gao, R.; Peterson, E.; Voytek, B.

10.1101/441626 — neuroscience — Posted on 2018-10-13

1720 In situ and high-resolution Cryo-EM structure of the Type VI secretion membrane complex

Rapisarda, C.; Cherrak, Y.; Kooger, R.; Schmidt, V.; Pellarin, R.; Logger, L.; Cascales, E.; Pilhofer, M.; Durand, E.; Fronzes, R.

10.1101/441683 — microbiology — Posted on 2018-10-13

1721 The geometry of habitat fragmentation: effects of distribution patterns on short-term species persistence

May, F.; Rosenbaum, B.; Schurr, F. M.; Chase, J. M.

10.1101/442467 — ecology — Posted on 2018-10-13

1722 Serum triglycerides in Alzheimer’s disease: Relation to neuroimaging and CSF biomarkers

Bernath, M.; Bhattacharyya, S.; Nho, K.; Barupal, D.; Fiehn, O.; Baillie, R.; Risacher, S.; Arnold, M.; Jacobson, T.; Trojanowski, J. Q.; Shaw, L. M.; Weiner, M. W.; Kaddurah-Daouk, R.; Saykin, A. J.

10.1101/441394 — neuroscience — Posted on 2018-10-13

1723 Multi-context blind source separation by error-gated Hebbian rule

Isomura, T.; Toyoizumi, T.

10.1101/441618 — neuroscience — Posted on 2018-10-13

1724 Sulfated RaxX, which represents an unclassified group of ribosomally synthesized post-translationally modified peptides, binds a host immune receptor

Luu, D. D.; Joe, A.; Chen, Y.; Parys, K.; Bahar, O.; Pruitt, R.; Chen, L. J. G.; Petzold, C. J.; Long, K.; Adamchak, C.; Stewart, V.; Belkhadir, Y.; Ronald, P. C.

10.1101/442517 — microbiology — Posted on 2018-10-13

1725 Role of RIG-I-like receptors in innate immune sensing of Coxsackievirus B3 and encephalomyocarditis virus in murine macrophages and fibroblasts

Francisco, E.; Suthar, M.; Gale, M.; Rosenfeld, A.; Racaniello, V. R.

10.1101/441667 — microbiology — Posted on 2018-10-13

1726 Response of extremophile microbiome to a rare rainfall reveals a two-step adaptation mechanism

Uritskiy, G.; Getsin, S.; Munn, A.; Gomez-Silva, B.; Davila, A.; Glass, B.; Taylor, J.; DiRuggiero, J.

10.1101/442525 — microbiology — Posted on 2018-10-13

1727 Sample-based regulatory intervention for managing risk within heterogeneous populations, with phytosanitary inspection of mixed consignments as a case study

Lane, S. E.; Cannon, R. M.; Arthur, A. D.; Robinson, A. P.

10.1101/441543 — ecology — Posted on 2018-10-13

1728 Word stress representations are language specific: evidence from event-related brain potentials

Honbolygo, F.; Kobor, A.; German, B.; Csepe, V.

10.1101/442129 — neuroscience — Posted on 2018-10-13

1729 Periplasmic protein EipA determines envelope stress resistance and virulence in Brucella abortus

Crosson, S.; Herrou, J.; Willett, J.; Fiebig, A.; Varesio, L.; Czyz, D.; Cheng, J.; Ultee, E.; Briegel, A.; Bigelow, L.; Babnigg, G.; Kim, Y.

10.1101/442541 — microbiology — Posted on 2018-10-13

1730 Anthropogenic remediation of heavy metals selects against natural microbial remediation

Hesse, E.; Padfield, D.; Bayer, F.; Van Veen, E. M.; Bryan, C. G.; Buckling, A.

10.1101/441873 — ecology — Posted on 2018-10-13

1731 Spectral and topological analysis of the cortical representation of the head position: does hypnotizability matter?

Ibanez-Marcelo, E.; Campioni, L.; Manzoni, D.; Santarcangelo, E. L.; Petri, G.

10.1101/442053 — neuroscience — Posted on 2018-10-13

1732 Principles of Meiotic Chromosome Assembly

Schalbetter, S. A.; Fudenberg, G.; Baxter, J.; Pollard, K. S.; Neale, M. J.

10.1101/442038 — molecular biology — Posted on 2018-10-13

1733 Differentiating Genomic SNPs Using Allele Depth and Predicted Genotype

Hasan, S.

10.1101/438325 — genomics — Posted on 2018-10-13

1734 Development of a novel signature of long noncoding RNAs as a prognostic biomarker for esophageal cancer

Miao, Y.; Sui, J.; Zhang, Y.; Yin, L.

10.1101/441568 — bioinformatics — Posted on 2018-10-13

1735 A Universal Algorithm to Detect Rare or Novel Cell Types in High-Throughput Single-Cell Gene Expression Data

Weiss, Z.; Tsoucas, D.

10.1101/438382 — bioinformatics — Posted on 2018-10-13

1736 Spatial relationships between white matter degeneration, amyloid load and cortical volume in amnestic mild cognitive impairment

Jelescu, I. O.; Shepherd, T. M.; Novikov, D. S.; Ding, Y.-S.; Ades-Aron, B.; Smith, J.; Vahle, T.; Babb, J. S.; Friedman, K. P.; de Leon, M. J.; Golomb, J. B.; Galvin, J. E.; Fieremans, E.

10.1101/441840 — neuroscience — Posted on 2018-10-13

1737 Density dependent enhancement effect of Wolbachia and the host RNAi response to a densovirus in Aedes cells

Parry, R.; Bishop, C.; De Hayr, L.; Asgari, S.

10.1101/441584 — microbiology — Posted on 2018-10-13

1738 Comparative genomics of human Lactobacillus crispatus isolates reveals genes for glycosylation and glycogen degradation: Implications for in vivo dominance of the vaginal microbiota

van der Veer, C.; Hertzberger, R.; Bruisten, S.; Tytgat, H.; Swanenburg, J.; de Kat Angelino-Bart, A.; Schuren, F.; Molenaar, D.; Reid, G.; de Vries, H.; Kort, R.

10.1101/441972 — microbiology — Posted on 2018-10-13

1739 Genome-wide signatures of local adaptation among seven stoneflies species along a nationwide latitudinal gradient in Japan

Gamboa, M.; Watanabe, K.

10.1101/440552 — genomics — Posted on 2018-10-13

1740 A prognostic signature for lower-grade gliomas based on expression of long noncoding RNAs

Kiran, M.; Chatrath, A.; Tang, X.; Keenan, D. M.; Dutta, A.

10.1101/442616 — genomics — Posted on 2018-10-13

1741 High-resolution structural genomics reveals new therapeutic vulnerabilities in glioblastoma

Johnston, M. J.; Nikolic, A.; Ninkovic, N.; Guilhamon, P.; Cavalli, F. M.; Seaman, S.; Zemp, F. J.; Lee, J.; Abdelkareem, A.; Ellestad, K.; Murison, A.; Kushida, M. M.; Coutinho, F. J.; Ma, Y.; Mungall, A. J.; Moore, R.; Marra, M. A.; Taylor, M. D.; Dirks, P. B.; Pugh, T. J.; Morrissy, S.; St Croix, B.; Mahoney, D. J.; Lupien, M.; Gallo, M.

10.1101/442277 — cancer biology — Posted on 2018-10-13

1742 Inferring linguistic transmission between generations at the scale of individuals

Thouzeau, V.; Affholder, A.; Mennecier, P.; Verdu, P.; Austerlitz, F.

10.1101/441246 — bioinformatics — Posted on 2018-10-13

1743 Algorithmic improvements for discovery of germline copy number variants in next-generation sequencing data

O'Fallon, B. D.; Durstchi, J.; Lewis, T.; Close, D.

10.1101/441378 — bioinformatics — Posted on 2018-10-13

1744 Algorithmic biosynthesis of eukaryotic glycans

Jaiman, A.; Thattai, M.

10.1101/440792 — systems biology — Posted on 2018-10-13

1745 Computational modeling of the crosstalk between macrophage polarization and tumor cell plasticity in the tumor microenvironment

Li, X.; Jolly, M. K.; George, J. T.; Pienta, K. J.; Levine, H.

10.1101/430520 — systems biology — Posted on 2018-10-13

1746 A Framework for Intelligence and Cortical Function Based on Grid Cells in the Neocortex

Hawkins, J.; Lewis, M.; Klukas, M.; Purdy, S.; Ahmad, S.

10.1101/442418 — neuroscience — Posted on 2018-10-13

1747 Brain responses to anticipating and receiving beer: Comparing light, at-risk, and dependent alcohol users

Groefsema, M.; Engels, R.; Voon, V.; Schellekens, A.; Luijten, M.; Sescousse, G.

10.1101/441089 — neuroscience — Posted on 2018-10-13

1748 Evolutionarily conserved anatomical and physiological properties of olfactory pathway till fourth order neurons in a species of grasshopper (Hieroglyphus banian)

Singh, S.; Joseph, J.

10.1101/436626 — neuroscience — Posted on 2018-10-13

1749 Quantitative network organization of interactions emerging from the evolution of sequence and structure space of antibodies: the RADARS model

Prechl, J.

10.1101/438804 — immunology — Posted on 2018-10-13

1750 Combining transcriptomic and fitness data reveals adaptive and additive plastic responses of gene expression to multiple stressors in Tribolium castaneum.

Koch, E. L.; Guillaume, F.

10.1101/442145 — evolutionary biology — Posted on 2018-10-13

1751 A 117 year retrospective analysis of Pennsylvania tick community dynamics

Pak, D.; Jacobs, S. B.; Sakamoto, J. M.

10.1101/433664 — ecology — Posted on 2018-10-13

1752 Omnivory does not preclude strong trophic cascades

Fahimipour, A. K.; Levin, D. A.; Anderson, K. E.

10.1101/441535 — ecology — Posted on 2018-10-13

1753 The allometry of brain size in mammals

Burger, J.; George, M.; Leadbetter, C.; Shaikh, F.

10.1101/440560 — animal behavior and cognition — Posted on 2018-10-13

1754 Resting-State Brain Fluctuation and Functional Connectivity Dissociate Moral Injury from Posttraumatic Stress Disorder

Sun, D.; Phillips, R.; Mulready, H.; Zablonski, S.; Turner, J.; Turner, M.; McClymond, K.; Nieuwsma, J.; Morey, R.

10.1101/442327 — neuroscience — Posted on 2018-10-13

1755 A Novel Dual And Triple RSVP Paradigm For P300 Speller

Mijani, A. M.; Shamsollahi, M. B.; Sheikh Hassani, M.

10.1101/441410 — neuroscience — Posted on 2018-10-13

1756 Automatic navigation system for the mouse brain

Tappan, S. J.; Eastwood, B. S.; O'Connor, N.; Wang, Q.; NG, L.; Feng, D.; Hooks, B.; Gerfen, C. R.; Hof, P. R.; Schmitz, C.; Glaser, J. R.

10.1101/442558 — neuroscience — Posted on 2018-10-13

1757 Alpha-band oscillations reflect external spatial coding for tactile stimuli in sighted, but not in congenitally blind humans

Schubert, J. T. W.; Buchholz, V. N.; Foecker, J.; Engel, A. K.; Roder, B.; Heed, T.

10.1101/442384 — neuroscience — Posted on 2018-10-13

1758 Mindfulness meditators do not show differences in electrophysiological measures of error processing

Bailey, N.; Raj, K.; Freedman, G.; Fitzgibbon, B.; Rogasch, N. C.; Van Dam, N.; Fitzgerald, P.

10.1101/438622 — neuroscience — Posted on 2018-10-13

1759 Gorilla in our Midst: An online behavioral experiment builder

Anwyl-Irvine, A.; Massonnie, J.; Flitton, A.; Kirkham, N.; Evershed, J.

10.1101/438242 — neuroscience — Posted on 2018-10-13

1760 Comparative Modeling of Transcranial Magnetic and Electric Stimulation in Mouse, Monkey, and Human

Alekseichuk, I.; Mantell, K.; Shirinpour, S.; Opitz, A.

10.1101/442426 — neuroscience — Posted on 2018-10-13

1761 Does the Diffusion Tensor Model Predict the Neurite Distribution of Cerebral Cortical Gray Matter? - Cortical DTI-NODDI

Fukutomi, H.; Glasser, M. F.; Murata, K.; Akasaka, T.; Fujimoto, K.; Yamamoto, T.; Autio, J. A.; Okada, T.; Togashi, K.; Zhang, H.; Van Essen, D. C.; Hayashi, T.

10.1101/441659 — neuroscience — Posted on 2018-10-13

1762 Marked point process filter for clusterless and adaptive encoding-decoding of multiunit activity

Arai, K.; Liu, D. F.; Frank, L. M.; Eden, U. T.

10.1101/438440 — neuroscience — Posted on 2018-10-13

1763 Increased Epstein-Barr virus C-promoter activity with CTCF-binding site deletion is associated with elevated EBNA2 recruitment.

Groves, I. J.; Allday, M. J.

10.1101/442186 — microbiology — Posted on 2018-10-13

1764 Stochastic simulations show how passive immunization can influence the germinal centre reaction and optimize host humoral responses

Garg, A. K.; Desikan, R.; Dixit, N. M.

10.1101/441691 — immunology — Posted on 2018-10-13

1765 A haplotype-resolved draft genome of the European sardine (Sardina pilchardus)

Louro, B.; De Moro, G.; Garcia, C. M. E. V. R.; Cox, C.; Verissimo, A.; Sabatino, S. J.; Santos, A. M.; Canario, A. V. M.

10.1101/441774 — genomics — Posted on 2018-10-13

1766 Genes with high network connectivity are enriched for disease heritability

Kim, S. S.; Dai, C.; Hormozdiari, F.; van de Geijn, B.; Gazal, S.; Park, Y.; O'Connor, L.; Amariuta, T.; Loh, P.-R.; Finucane, H.; Raychaudhuri, S.; Price, A. L.

10.1101/442582 — genetics — Posted on 2018-10-13

1767 Cleft lip/palate and educational attainment: cause, consequence, or correlation? A Mendelian randomization study

Dardani, C.; Howe, L.; Stergiakouli, E.; Wren, Y.; Humphries, K.; Davies, A.; Ho, K.; Mangold, E.; Ludwig, K.; Relton, C. L.; Davey Smith, G.; Lewis, S. J.; Sandy, J.; Davies, N. M.; Sharp, G.

10.1101/434126 — genetics — Posted on 2018-10-13

1768 Predicted asymmetrical effects of warming on nocturnal and diurnal ectotherms

McMunn, M. S.

10.1101/441501 — ecology — Posted on 2018-10-13

1769 Tropical arboreal ants form dominance hierarchies over nesting resources in agroecosystems

Yitbarek, S.; Philpott, S. M.

10.1101/442632 — ecology — Posted on 2018-10-13

1770 Differential immune gene expression associated with contemporary range expansion of two invasive rodents in Senegal

Charbonnel, N.; Galan, M.; Tatard, C.; Loiseau, A.; Diagne, C. A.; Dalecky, A.; Parinello, H.; Rialle, S.; Severac, D.; Brouat, C.

10.1101/442160 — ecology — Posted on 2018-10-13

1771 Indirect effects on fitness between individuals that have never met via an extended phenotype

Fisher, D.; Haines, J. A.; Boutin, S.; Dantzer, B.; Lane, J. E.; Coltman, D. W.; McAdam, A. G.

10.1101/442335 — ecology — Posted on 2018-10-13

1772 Defoliation estimation of forest trees from ground-level images

Kalin, U.; Lang, N.; Hug, C.; Gessler, A.; Wegner, J. D.

10.1101/441733 — ecology — Posted on 2018-10-13

1773 Removing Confounding Factors Associated Weights in Deep Neural Networks Improves the Prediction Accuracy for Healthcare Applications

Wang, H.; Wu, Z.; Xing, E.

10.1101/442442 — bioinformatics — Posted on 2018-10-13

1774 Modelling double strand break susceptibility to interrogate structural variation in cancer

Ballinger, T. J.; Bouwman, B.; Mirzazadeh, R.; Garnerone, S.; Crosetto, N.; Semple, C.

10.1101/441832 — bioinformatics — Posted on 2018-10-13

1775 Variational Infinite Heterogeneous Mixture Model for Semi-supervised Clustering of Heart Enhancers

Mehdi, T. F.; Singh, G.; Mitchell, J. A.; Moses, A. M.

10.1101/442392 — bioinformatics — Posted on 2018-10-13

1776 Fast Detection of Differential Chromatin Domains with SCIDDO

Ebert, P.; Schulz, M. H.

10.1101/441766 — bioinformatics — Posted on 2018-10-13

1777 An averaging strategy to reduce variability in target-decoy estimates of false discovery rate

Keich, U.; Tamura, K.; Noble, W.

10.1101/440594 — bioinformatics — Posted on 2018-10-13

1778 Species composition and altitudinal distribution of bumble bees (Hymenoptera: Apidae: Bombus) in the East Himalaya, Arunachal Pradesh, India

Streinzer, M.; Chakravorty, J.; Neumayer, J.; Megu, K.; Narah, J.; Schmitt, T.; Bharti, H.; Spaethe, J.; Brockmann, A.

10.1101/442475 — zoology — Posted on 2018-10-13

1779 A free boundary model of epithelial dynamics

Baker, R. E.; Parker, A.; Simpson, M. J.

10.1101/433813 — systems biology — Posted on 2018-10-13

1780 Potentially repurposable drugs for schizophrenia identified from its interactome

Karunakaran, K. B.; Chaparala, S.; Ganapathiraju, M. K.

10.1101/442640 — neuroscience — Posted on 2018-10-13

1781 High Temporal Sub-millisecond Time Resolution Stimulation Increases Performances of Retina Prosthetic Vision

Benosman, R. B.; Sihem, K.; Simon-Chane, C.; Galluppi, F.; Sabatier, Q.

10.1101/442269 — neuroscience — Posted on 2018-10-13

1782 The first draft genomes of the ant Formica exsecta, and its Wolbachia endosymbiont reveal extensive gene transfer from endosymbiont to host.

Dhaygude, K.; Nair, A.; Johansson, H.; Wurm, Y.; Sundström, L.

10.1101/436691 — genomics — Posted on 2018-10-13

1783 Entomopathogenic nematodes increase predation success by inducing specific cadaver volatiles that attract healthy herbivores

Zhang, X.; Machado, R. A.; Van Doan, C.; Arce, C. C.; Hu, L.; ROBERT, C. A.

10.1101/442483 — ecology — Posted on 2018-10-13

1784 XTalkiiS: a tool for finding data-driven cross-talks between intra-/inter-species pathways

Azad, A. K. M.

10.1101/437541 — bioinformatics — Posted on 2018-10-13

1785 Immunoinformatics Prediction of Epitope Based Peptide Vaccine Against Madurella mycetomatis Translationally Controlled Tumor Protein

Bolis, S.; Osman, W.; Anwar, M.; Abdelmagid, M.; Ahmed, E.; Abaker, M.; Abdelwahab, W.; Hashim, S.; Abubakralsiddig, A.; Algaali, A.; Hashim, O.; Hassan, M.

10.1101/441881 — bioinformatics — Posted on 2018-10-13

1786 Nomenclature Errors in Public 16S rRNA Gene Reference Databases

Lesack, K. J.; Birol, I.

10.1101/441576 — microbiology — Posted on 2018-10-13

1787 Root volatiles in plant-plant interactions II: Root terpenes from Centaurea stoebe modify Taraxacum officinale root chemistry and root herbivore growth

Huang, W.; Gfeller, V.; Erb, M.

10.1101/441790 — plant biology — Posted on 2018-10-13

1788 Estimation of allele-specific fitness effects across human protein-coding sequences and implications for disease

Huang, Y.-F.; Siepel, A.

10.1101/441337 — genomics — Posted on 2018-10-13

1789 Overdispersed gene expression characterizes schizophrenic brains

Huang, G.; Osorio Hurtado, D. C.; Guan, J.; Ji, G.; Cai, J.

10.1101/441527 — genetics — Posted on 2018-10-13

1790 Root volatiles in plant-plant interactions I: Characterization of root sesquiterpene emissions from Centaurea stoebe and their effects on other plants

Gfeller, V.; Huber, M.; Foerster, C.; Huang, W.; Koellner, T. G.; Erb, M.

10.1101/441717 — plant biology — Posted on 2018-10-13

1791 Supply and consumption of glucose 6-phosphate in the chloroplast stroma

Preiser, A. L.; Banerjee, A.; Fisher, N.; Sharkey, T. D.

10.1101/442434 — biochemistry — Posted on 2018-10-13

1792 Reactive SINDy: Discovering governing reactions from concentration data

Hoffmann, M.; Fröhner, C.; Noe, F.

10.1101/442095 — biochemistry — Posted on 2018-10-13

1793 The Flexiscope: a Low Cost, Flexible, Convertible, and Modular Microscope with Automated Scanning and Micromanipulation.

Courtney, A.; Alvey, L. M.; Merces, G. O. T.; Pickering, M.

10.1101/442210 — neuroscience — Posted on 2018-10-13

1794 Assembly of Yeast Spindle Pole Body and its Components Revealed by Electron Cryo-Tomography

Li, S.; Fernandez, J.-J.

10.1101/442574 — cell biology — Posted on 2018-10-13

1795 Knockout of the gene encoding the extracellular matrix protein Sned1 results in craniofacial malformations and early neonatal lethality.

Naba, A.; Jan, K.; Barque, A.; Nicholas, C. L.; Hynes, R. O.

10.1101/440081 — developmental biology — Posted on 2018-10-12

1796 Telomeric dysfunction triggers an unstable growth arrest leading to irreparable genomic lesions and entry into cellular senescence

Ghadaouia, S.; Oliver, M.-A.; Martinez, A.; Malaquin, N.; Cardin, G. B.; Rodier, F.

10.1101/442533 — cell biology — Posted on 2018-10-12

1797 Electron Cryo-Tomography Provides Insight into Procentriole Architecture and Assembly Mechanism

Li, S.; Fernandez, J.-J.; Marshall, W.; Agard, D.

10.1101/442590 — cell biology — Posted on 2018-10-12

1798 Alkaline ceramidase catalyzes the hydrolysis of ceramides via a catalytic mechanism shared by Zn2+ dependent amidases

Yi, J. K.; Xu, R.; Obeid, L. M.; Hannun, Y. A.; Airola, M. V.; Mao, C.

10.1101/442202 — biochemistry — Posted on 2018-10-12

1799 EZH2 influences mdDA neuronal differentiation, maintenance and survival

Wever, I.; von Oerthel, L.; Wagemans, M. R. J.; Smidt, M. P.

10.1101/442236 — neuroscience — Posted on 2018-10-12

1800 Centrosome-nuclear envelope tethering and microtubule motor-based pulling forces collaborate in centrosome positioning during mitotic entry

Boudreau, V.; Chen, R.; Edwards, A.; Sulaimain, M.; Maddox, P.

10.1101/442368 — cell biology — Posted on 2018-10-12

1801 The Dynamic Conformational Landscapes of the Protein Methyltransferase SETD8

Chen, S.; Wiewiora, R. P.; Meng, F.; Babault, N.; Ma, A.; Yu, W.; Qian, K.; Hu, H.; Zou, H.; Wang, J.; Fan, S.; Blum, G.; Pittella-Silva, F.; Beauchamp, K. A.; Tempel, W.; Jiang, H.; Chen, K.; Skene, R.; Zheng, Y. G.; Brown, P. J.; Jin, J.; Luo, C.; Chodera, J. D.; Luo, M.

10.1101/438994 — biophysics — Posted on 2018-10-12

1802 Predicting mRNA abundance directly from genomic sequence using deep convolutional neural networks

Agarwal, V.; Shendure, J.

10.1101/416685 — genomics — Posted on 2018-10-12

1803 A Rigorous Interlaboratory Examination of the Need to Confirm NGS-Detected Variants by an Orthogonal Method in Clinical Genetic Testing

Lincoln, S. E.; Truty, R.; Lin, C.-F.; Zook, J.; Paul, J.; Ramey, V.; Salit, M.; Rehm, H.; Nussbaum, R.; Lebo, M.

10.1101/335950 — genetics — Posted on 2018-10-12

1804 Ecology Shapes Microbial Immune Strategy: Temperature and Oxygen as Determinants of the Incidence of CRISPR Adaptive Immunity

Weissman, J. L.; Laljani, R.; Fagan, W. F.; Johnson, P. L. F.

10.1101/326330 — microbiology — Posted on 2018-10-12

1805 Towards Resolving and Redefining Amphipyrinae (Lepidoptera, Noctuoidea, Noctuidae): a Massively Polyphyletic Taxon

Keegan, K.; Lafontaine, J. D.; Wahlberg, N.; Wagner, D.

10.1101/271478 — evolutionary biology — Posted on 2018-10-12

1806 Axon-seq decodes the motor axon transcriptome and its modulation in response to ALS

Nijssen, J.; Aguila Benitez, J. C.; Hoogstraaten, R.; Kee, N.; Hedlund, E.

10.1101/321596 — neuroscience — Posted on 2018-10-12

1807 Transcriptome-wide association studies: opportunities and challenges

10.1101/206961 — genetics — Posted on 2018-10-12

1808 Aberrant mast cell activation promotes chronic recurrent multifocal osteomyelitis

Young, S.; Sharma, N.; Lee, J. H. P.; Chitu, V.; Neumeister, V.; Sohr, E.; Stanley, R.; Hedrich, C.; Craig, A. W.

10.1101/259275 — immunology — Posted on 2018-10-12

1809 An examination of the evolve-and-resequence method using Drosophila simulans

Kelly, J. K.; Hughes, K.

10.1101/337188 — evolutionary biology — Posted on 2018-10-12

1810 Theoretical Tool Bridging Cell Polarities with Development of Robust Morphologies

Nissen, S. B.; Ronhild, S.; Trusina, A.; Sneppen, K.

10.1101/328385 — biophysics — Posted on 2018-10-12

1811 Different states of priority recruit different neural codes in visual working memory

Yu, Q.; Postle, B. R.

10.1101/334920 — neuroscience — Posted on 2018-10-12

1812 Social effects of territorial neighbours on the timing of spring breeding in North American red squirrels

Fisher, D. N.; Wilson, A. J.; Boutin, S.; Dantzer, B.; Lane, J. E.; Coltman, D. W.; Gorrell, J. C.; McAdam, A. G.

10.1101/329276 — evolutionary biology — Posted on 2018-10-12

1813 High-resolution 4D spatiotemporal analysis reveals the contributions of local growth dynamics to contrasting maize root architectures

Jiang, N.; Floro, E.; Bray, A. L.; Laws, B.; Duncan, K. E.; Topp, C. N.

10.1101/381046 — plant biology — Posted on 2018-10-12

1814 A Reproducible Triple-Network Neurobiology of Depressive Rumination

Pisner, D.; Shumake, J.; Beevers, C.; Schnyer, D.

10.1101/365759 — neuroscience — Posted on 2018-10-12

1815 Evolutionary characteristics of intergenic transcribed regions indicate widespread noisy transcription in the Poaceae

Lloyd, J. P.; Bowman, M. J.; Azodi, C. B.; Sowers, R. P.; Moghe, G. D.; Childs, K. L.; Shiu, S.-H.

10.1101/440933 — genomics — Posted on 2018-10-12

1816 Deep transfer learning-based hologram classification for molecular diagnostics

Kim, S.-J.; Wang, C.; Zhao, B.; Im, H.; Min, J.; Choi, H. J.; Tadros, J.; Choi, N. R.; Castro, C. M.; Weissleder, R.; Lee, H.; Lee, K.

10.1101/192559 — bioengineering — Posted on 2018-10-12

1817 MEMS-Actuated Carbon Fiber Microelectrode for Neural Recording

Zoll, R. S.; Schindler, C. B.; Massey, T. L.; Drew, D. S.; Maharbiz, M. M.; Pister, K. S. J.

10.1101/385153 — bioengineering — Posted on 2018-10-12

1818 In vivo assembly and trafficking of olfactory Ionotropic Receptors

Abuin, L.; Prieto-Godino, L. L.; Pan, H.; Gutierrez, C.; Huang, L.; Jin, R.; Benton, R.

10.1101/441782 — neuroscience — Posted on 2018-10-12

1819 EZH2 is essential for fate determination in the mammalian Isthmic area

Wever, I.; Wagemans, M. R. J.; Smidt, M.

10.1101/442111 — developmental biology — Posted on 2018-10-12

1820 Lmx1b influences correct post-mitotic coding of mesodiencephalic dopaminergic neurons

Wever, I.; Barrientos, P. L.; Hoekstra, E.; Smidt, M. P.

10.1101/441915 — developmental biology — Posted on 2018-10-12

1821 Tumor pre-conditioning of draining lymph node stroma by lactic acid

Riedel, A.; Swietlik, J.; Shorthouse, D.; Haas, L.; Young, T.; Costa, A. S. H.; Davidson, S.; Pedro, L.; Oskarsson, T.; Hall, B. A.; Frezza, C.; Shields, J.

10.1101/442137 — cancer biology — Posted on 2018-10-12

1822 Motile curved bacteria are Pareto-optimal

Schuech, R.; Hoehfurtner, T.; Smith, D.; Humphries, S.

10.1101/441139 — biophysics — Posted on 2018-10-12

1823 Empirical noise-mean fitness landscapes and the evolution of gene expression

Schmiedel, J. M.; Carey, L. B.; Lehner, B.

10.1101/436170 — systems biology — Posted on 2018-10-12

1824 In rapidly adapting asexuals, the orientation of G can reflect selection rather than functional constraints

Gomez, K.; Bertram, J.; Masel, J.

10.1101/351171 — evolutionary biology — Posted on 2018-10-12

1825 Effect of the macroalgae Asparagopsis taxiformis on methane production and the rumen microbiome assemblage

Roque, B. M.; Brooke, C. G.; Ladau, J.; Polley, T.; Marsh, L.; Najafi, N.; Pandey, P.; Singh, L.; Salwen, J. K.; Eloe-Fadrosh, E.; Kebreab, E.; Hess, M.

10.1101/436568 — systems biology — Posted on 2018-10-12

1826 Prevotella copri, a potential indicator for high feed efficiency in western steers

Brooke, C. G.; Najafi, N.; Dykier, K. C.; Hess, M.

10.1101/436832 — microbiology — Posted on 2018-10-12

1827 TCR-pMHC bond length controls TCR ligand discrimination

Sasmal, D. K.; Feng, W.; Roy, S.; Leung, P.; He, Y.; Cai, C.; Cao, G.; Lian, H.; Qin, J.; Hui, E.; Schreiber, H.; Adams, E.; Huang, J.

10.1101/433938 — immunology — Posted on 2018-10-12

1828 A multifaceted approach for analyzing complex phenotypic data in rodent models of autism

Das, I.; Estevez, M. A.; Sarkar, A. A.; Basu, S.

10.1101/439455 — bioinformatics — Posted on 2018-10-12

1829 The ion channel ppk301 controls freshwater egg-laying in the mosquito Aedes aegypti

Matthews, B. J.; Younger, M. A.; Vosshall, L. B.

10.1101/441592 — neuroscience — Posted on 2018-10-12

1830 Dynamic enhancer partitioning instructs activation of a growth regulator during exit from naïve pluripotency

Greenberg, M.; Teissander, A.; Walter, M.; Noordermeer, D.; Bourc'his, D.

10.1101/441824 — molecular biology — Posted on 2018-10-12

1831 Unraveling Tumor-Immune Heterogeneity in Advanced Ovarian Cancer Uncovers Immunogenic Effect of Chemotherapy

10.1101/441428 — cancer biology — Posted on 2018-10-12

1832 A Gaussian process model of human electrocorticographic data

Owen, L. L. W.; Heusser, A. C.; Manning, J. R.

10.1101/121020 — neuroscience — Posted on 2018-10-12

1833 Repeated evolution of asexuality involves convergent gene expression changes

Parker, D. J.; Bast, J.; Jalvingh, K.; Dumas, Z.; Robinson-Rechavi, M.; Schwander, T.

10.1101/364869 — evolutionary biology — Posted on 2018-10-12

1834 The loss of V0-ATPase induces Microvillus inclusion-like disease in C. elegans

Bidaud-Meynard, A.; Nicolle, O.; Heck, M.; Michaux, G.

10.1101/412122 — cell biology — Posted on 2018-10-12

1835 Estimating Individual Contributions to Complex DNA SNP Mixtures

Ricke, D.; Fremont-Smith, P.; Watkins, J.; Boettcher, T.; Schwoebel, E.

10.1101/391086 — bioinformatics — Posted on 2018-10-12

1836 Crop Information Engine and Research Assistant (CIERA) for managing genealogy, phenotypic and genotypic data for breeding programs

Yates, S.; Lague, M.; Knox, R.; Cuthbert, R.; Clarke, F.; Clarke, J.; Ruan, Y.; Jatinder, J.; Bhadauria, V.

10.1101/439505 — bioinformatics — Posted on 2018-10-12

1837 Anthranilic acid regulates subcellular localization of auxin transporters during root gravitropism

Doyle, S. M.; Rigal, A.; Grones, P.; Karady, M.; Barange, D. K.; Majda, M.; Parizkova, B.; Karampelias, M.; Zwiewka, M.; Pencik, A.; Almqvist, F.; Ljung, K.; Novak, O.; Robert, S.

10.1101/422733 — plant biology — Posted on 2018-10-12

1838 Discrete confidence levels revealed by sequential decisions

Lisi, M.; Mongillo, G.; Gorea, A.

10.1101/169243 — neuroscience — Posted on 2018-10-12

1839 Theta-frequency resonance as the scale of input-output mapping in the medial entorhinal cortex

Katyare, N.; Sikdar, S.

10.1101/369025 — neuroscience — Posted on 2018-10-12

1840 Potentiation of cerebellar Purkinje cells facilitates whisker reflex adaptation through increased simple spike activity

Romano, V.; De Propris, L.; Bosman, L. W. J.; Warnaar, P.; Brinke, M. M. t.; Lindeman, S.; Ju, C.; Velauthapillai, A.; Spanke, J. K.; Middendorp Guerra, E.; Hoogland, T. M.; Negrello, M.; D'Angelo, E.; De Zeeuw, C. I.

10.1101/335489 — neuroscience — Posted on 2018-10-12

1841 Measures of neural similarity

Bobadilla-Suarez, S.; Ahlheim, C.; Mehrotra, A.; Panos, A.; Love, B. C.

10.1101/439893 — neuroscience — Posted on 2018-10-12

1842 Comprehensive analysis of intra- and interpatient evolution of enterovirus D68 by whole-genome deep sequencing

Dyrdak, R.; Mastafa, M.; Hodcroft, E.; Neher, R.; Albert, J.

10.1101/420836 — microbiology — Posted on 2018-10-12

1843 A new method for detecting autocorrelation of evolutionary rates in large phylogenies

Tao, Q.; Tamura, K.; Battistuzzi, F.; Kumar, S.

10.1101/346635 — evolutionary biology — Posted on 2018-10-12

1844 The capacity for correlated semantic memories in the cortex

Boboeva, V.; Brasselet, R.; Treves, A.

10.1101/321703 — neuroscience — Posted on 2018-10-12

1845 Segregated encoding of spatiotemporal features in the mouse visual cortex

Han, X.; Vermaercke, B.; Bonin, V.

10.1101/441014 — neuroscience — Posted on 2018-10-12

1846 Spontaneous activity emerging from an inferred network model captures complex spatio-temporal dynamics of spiking data

Capone, C.; Gigante, G.; Del Giudice, P.

10.1101/292862 — neuroscience — Posted on 2018-10-12

1847 Chiral cilia orientation in the left-right organizer

Rua Ferreira, R.; Pakula, G.; Klaeyle, L.; Fukui, H.; Vilfan, A.; Supatto, W.; Vermot, J.

10.1101/252502 — developmental biology — Posted on 2018-10-12

1848 Linking YAP to Müller glia quiescence exit in the degenerative retina

Hamon, A.; Ail, D.; Garcia-Garcia, D.; Bitard, J.; Dalkara, D.; Locker, M.; Roger, J.; Perron, M.

10.1101/431254 — developmental biology — Posted on 2018-10-12

1849 Individual selection leads to collective efficiency through coordination

Bernard, A.; Bredeche, N.; Andre, J.-B.

10.1101/422287 — evolutionary biology — Posted on 2018-10-12

1850 HSV-1 strains circulating in Finland demonstrate uncoupling of geographic and phenotypic variation

Bowen, C. D.; Paavilainen, H.; Renner, D. W.; Palomäki, J.; Lehtinen, J.; Vuorinen, T.; Norberg, P.; Hukkanen, V.; Szpara, M.

10.1101/424408 — microbiology — Posted on 2018-10-12

1851 Rapid profiling of the preterm infant gut microbiota using nanopore sequencing aids pathogen diagnostics

Leggett, R. M.; Alcon-Giner, C.; Heavens, D.; Caim, S.; Brook, T. C.; Kujawska, M.; Martin, S.; Hoyles, L.; Clarke, P.; Hall, L.; Clark, M. D.

10.1101/180406 — genomics — Posted on 2018-10-12

1852 Non-canonical apical constriction shapes emergent matrices in C. elegans.

Katz, S. S.; Maybrun, C.; Maul-Newby, H. M.; Frand, A. R.

10.1101/189951 — developmental biology — Posted on 2018-10-12

1853 The ULK1-FBXW5-SEC23B nexus controls autophagy

Pagano, M.; Jeong, Y.-T.; Simoneschi, D.; Keegan, S.; Melville, D.; Adler, N.; Saraf, A.; Florens, L.; Washburn, M. P.; Cavasotto, C.; Fenyö, D.; Cuervo, A. M.; Rossi, M.

10.1101/441923 — cell biology — Posted on 2018-10-12

1854 Type III secretion system of Pseudomonas aeruginosa affects mucin gene expression via NF-κB and AKT signaling in human carcinoma epithelial cells and a pneumonia mouse model

PARK, J.-W.; Shin, I.-S.; Oh, S.-R.; Ha, U.-H.; Ahn, K.-S.

10.1101/442061 — microbiology — Posted on 2018-10-12

1855 Analyzing Human Movements - Introducing A Framework To Extract And Evaluate Biomechanical Data

Richter, C.; King, E.; Strike, S.; Franklyn-Miller, A.

10.1101/442087 — scientific communication and education — Posted on 2018-10-12

1856 The mRNA export adaptor Yra1 contributes to DNA double-strand break repair through its C-box domain

Stutz, F.; Infantino, V.; Tutucci, E.; Yeh Martin, N.; Zihlmann, A.; Garcia-Molinero, V.; Silvano, G.; Palancade, B.

10.1101/441980 — molecular biology — Posted on 2018-10-12

1857 KSHV activates unfolded protein response sensors but suppresses downstream transcriptional responses to support lytic replication

Johnston, B. P.; McCormick, C.

10.1101/442079 — microbiology — Posted on 2018-10-12

1858 Balancing selection at a premature stop mutation in the myostatin gene underlies a recessive leg weakness syndrome in pigs

Matika, O.; Robledo, D.; Pong-Wong, R.; Bishop, S. C.; Riggio, V.; Finlayson, H.; Lowe, N. R.; Hoste, A. E.; Walling, G. A.; Archibald, A. L.; Woolliams, J. A.; Houston, R. D.

10.1101/442012 — genetics — Posted on 2018-10-12

1859 Dynamic regulation of the Trypanosoma brucei transferrin receptor in response to iron starvation is mediated via the 3UTR

Benz, C.; Lo, W.; Fathallah, N.; Connor-Guscott, A.; Benns, H. J.; Urbaniak, M. D.

10.1101/441931 — cell biology — Posted on 2018-10-12

1860 The influence of truncating the carboxy-terminal amino acid residues of Streptococcal enolase on its ability to interact with canine plasminogen.

Deshmukh, S. S.; Kornblatt, M. J.; Kornblatt, J. A.

10.1101/442004 — biophysics — Posted on 2018-10-12

1861 Strengthening Bolivian Pharmacovigilance system: new therapeutic strategies to improve health of Chagas Disease and Tuberculosis patients

Cortes-Serra, N.; Saravia, R.; Grageda, R. M.; Apaza, A.; Gonzalez, J. A.; Rios, B.; Gascon, J.; Torrico, F.; Pinazo, M.-J.

10.1101/441949 — pharmacology and toxicology — Posted on 2018-10-12

1862 Bacteroides fragilis defense against Cronobacter sakazakii -induced pathogenicity by regulating the intestinal epithelial barrier function and attenuating both apoptotic and pyroptotic cell death

Fan, H. y.; Zhang, Q.; Lin, R.; Chen, Z.; Leng, X.; Wu, X.; Zhang, Y.; Zhu, B.; Bai, Y.; Zhi, F.

10.1101/442046 — microbiology — Posted on 2018-10-12

1863 Haematological parameters and plasma levels of 8-iso-prostaglandin F2α in malaria-sickle cell co-morbidity: A cross sectional study

Aninagyei, E.; Tetteh, E. D.; Banini, J.; Nani, E.; Adu, P.; Ephraim, R. K. D.; Egyir-Yawson, A.; Acheampong, D. O.

10.1101/441998 — immunology — Posted on 2018-10-12

1864 The fate of deleterious variants in a barley genomic prediction population

Kono, T. J.; Liu, C.; Vonderharr, E. E.; Koenig, D.; Fay, J. C.; Smith, K. P.; Morrell, P. L.

10.1101/442020 — genomics — Posted on 2018-10-12

1865 TREATMENT OUTCOME OF DIABETIC KETOACIDOSIS AMONG PATIENTS ATENDING GENERAL HOSPITAL IN NORTH-WEST ETHIOPIA: HOSPITAL BASED STUDY

Abegaz, T. M.; Mekonnen, G. A.; Gebreyohannes, E. A.; Gelaye, K. A.

10.1101/441964 — epidemiology — Posted on 2018-10-12

1866 Insights into the genetic diversity of Mycobacterium tuberculosis in Tanzania

Gagneux, S.; Rutaihwa, L. K.; Sasamalo, M.; Jaleco, A.; Hella, J.; Kingazi, A.; Kamwela, L.; Kingalu, A.; Malewo, B.; Shirima, R.; Doetsch, A.; Feldmann, J.; Reinhard, M.; Borrell, S.; Reither, K.; Doulla, B.; Fenner, L.

10.1101/441956 — epidemiology — Posted on 2018-10-12

1867 Myosin-II mediated traction forces evoke localized Piezo1 Ca2+ flickers

Ellefsen, K.; Chang, A.; Nourse, J. L.; Holt, J. R.; Arulmoli, J.; Mekhdjian, A.; Abuwarda, H.; Tombola, F.; Flanagan, L. A.; Dunn, A. R.; Parker, I.; Pathak, M. M.

10.1101/294611 — biophysics — Posted on 2018-10-12

1868 Dissociation rate compensation mechanism for budding yeast pioneer transcription factors

Donovan, B. T.; Chen, H.; Jipa, C.; Bai, L.; Poirier, M. G.

10.1101/441469 — molecular biology — Posted on 2018-10-12

1869 Subclonal architecture, evolutionary trajectories and patterns of inheritance of germline variants in pediatric glioblastoma

Hoffman, M.; Gillmor, A. H.; Kunz, D. J.; Johnston, M. J.; Nikolic, A.; Karta, K.; King, J.; Ellestad, K.; Dang, N. H.; Cavalli, F. M.; Kushida, M. M.; Coutinho, F. J.; Luu, B.; Ma, Y.; Mungall, A. J.; Moore, R.; Marra, M. A.; Taylor, M. D.; Pugh, T. J.; Dirks, P. B.; Senger, D. L.; Simons, B. D.; Chan, J. A.; Morrissy, S.; Gallo, M.

10.1101/434241 — cancer biology — Posted on 2018-10-12

1870 Antigen receptor locus dynamics is orchestrated near the sol-gel phase transition to enforce stepwise VDJ gene rearrangement

Khanna, N.; Zhang, J.; Dudko, O.; Murre, C.

10.1101/441444 — immunology — Posted on 2018-10-12

1871 Cyclin B2 is required for progression through meiosis in mouse oocytes

Daldello, E. M.; Luong, X. G.; Yang, C.-R.; Huhn, J.; Conti, M.

10.1101/441352 — developmental biology — Posted on 2018-10-12

1872 The RhoGAP SPV-1 regulates calcium signaling to control the contractility of the C. elegans spermatheca during embryo transits.

Bouffard, J.; Cecchetelli, A. D.; Clifford, C.; Sethi, K.; Zaidel-Bar, R.; Cram, E. J.

10.1101/441386 — cell biology — Posted on 2018-10-12

1873 QuBiT: A quantitative tool for epithelial tubes reveals cell dynamics and unexpected patterns of organization during Drosophila tracheal morphogenesis

Yang, R.; Li, E.; Mani, M.; Beitel, G. J.

10.1101/441600 — cell biology — Posted on 2018-10-12

1874 Galectin-1 promotes the invasion of bladder cancer urothelia through their matrix milieu

Balakrishnan, A.; Pally, D.; Gondkar, K.; Naito, S.; Sidransky, D.; Chatterjee, A.; Kumar, P.; Bhat, R.

10.1101/441642 — cancer biology — Posted on 2018-10-12

1875 Dysregulated Oscillatory Connectivity in the Visual System in Autism Spectrum Disorder

Seymour, R. A.; Rippon, G.; Gooding-Williams, G.; Schoffelen, J.-M.; Kessler, K.

10.1101/440586 — neuroscience — Posted on 2018-10-11

1876 Re-programming of Pseudomonas syringae pv. actinidiae gene expression during early stages of infection of kiwifruit

McAtee, P.; Brian, L.; Curran, B.; van der Linden, O.; Nieuwenhuizen, N.; Chen, X.; Henry-Kirk, R.; Stroud, E. A.; Nardozza, S.; Rikkerink, E. H. A.; Print, C.; Allan, A. C.; Templeton, M. D.

10.1101/340018 — microbiology — Posted on 2018-10-11

1877 Overlooked roles of DNA damage and maternal age in generating human germline mutations

Gao, Z.; Moorjani, P.; Sasani, T.; Pedersen, B.; Quinlan, A.; Jorde, L.; Amster, G.; Przeworski, M.

10.1101/327098 — genetics — Posted on 2018-10-11

1878 Standardized biogeographic grouping system for annotating populations in pharmacogenetic research

Huddart, R.; Fohner, A. E.; Whirl-Carrillo, M.; Wojcik, G. L.; Gignoux, C. R.; Popejoy, A. B.; Bustamante, C. D.; Altman, R. B.; Klein, T.

10.1101/384016 — genetics — Posted on 2018-10-11

1879 Oncogenic effects of germline mutations in lysosomal storage disease genes

Shin, J.; Kim, D.; Kim, H.-L.; Choi, M.; Korbel, J.; Yoon, S.-S.; Koh, Y.; ICGC/TCGA Pan-Cancer Analysis of Whole Genomes Network,

10.1101/380121 — genetics — Posted on 2018-10-11

1880 Molecular phylogeny and diversification timing of the Nemouridae family (Insecta, Plecoptera) in the Japanese Archipelago

Gamboa, M.; Muranyi, D.; Kanmori, S.; Watanabe, K.

10.1101/440529 — evolutionary biology — Posted on 2018-10-11

1881 A comparison of automated lesion segmentation approaches for chronic stroke T1-weighted MRI data

Ito, K. L.; Kim, H.; Liew, S.-L.

10.1101/441451 — neuroscience — Posted on 2018-10-11

1882 Evidence that poor HAART adherence has a great impact on HIV/AIDS treatment failure more than severity of illness and opportunity of infection in Ethiopia: Systematic review and meta-analysis

Endalamaw, A.; Mekonnen, M.; Geremew, D.; Ambaw, F.; Tesera, H.; Habtewold, T. D.

10.1101/440743 — epidemiology — Posted on 2018-10-11

1883 What drives mortality among HIV patients in a conflict setting? A prospective cohort study in the Central African Republic

Crellen, T.; Ssonko, C.; Piening, T.; Simaleko, M. M.; St. Calvaire, D. H.; Gieger, K.; Siddiqui, M. R.

10.1101/437103 — epidemiology — Posted on 2018-10-11

1884 Transmission dynamics and between-species interactions of multidrug-resistant Enterobacteriaceae

Crellen, T.; Turner, P.; Pol, S.; Baker, S.; Nguyen Thi Nguyen, T.; Stoesser, N.; Day, N. P. J.; Cooper, B. S.

10.1101/436006 — epidemiology — Posted on 2018-10-11

1885 Using digital epidemiology methods to monitor influenza-like illness in the Netherlands in real-time: the 2017-2018 season

Schneider, P.; van Gool, C.; Spreeuwenberg, P.; Hooiveld, M.; Donker, G.; Barnett, D.; Paget, J.

10.1101/440867 — epidemiology — Posted on 2018-10-11

1886 Antibodies against egg- and cell-grown influenza A(H3N2) viruses in adults hospitalized during the 2017-2018 season

Levine, M. Z.; Martin, E.; Petrie, J. G.; Lauring, A. S.; Holiday, C.; Jefferson, S.; Fitzsimmons, W. J.; Johnson, E.; Ferdinands, J. M.; Monto, A. S.

10.1101/439471 — epidemiology — Posted on 2018-10-11

1887 A spatio-temporal individual-based network framework for West Nile virus in the USA: spreading pattern of West Nile virus

Moon, S. A.; Cohnstaedt, L. W.; McVey, D. S.; Scoglio, C. M.

10.1101/438366 — epidemiology — Posted on 2018-10-11

1888 Bacterial strain displacement in inflammatory bowel diseases after fecal microbiota transplantation

Zou, M.; Jie, Z.; Cui, B.; Wang, H.; Feng, Q.; Zou, Y.; Zhang, X.; Yang, H.; Wang, J.; Zhang, F.; Jia, H.

10.1101/439687 — clinical trials — Posted on 2018-10-11

1889 Asthma-Neoplasms Relationships: New Insights Using Machine Inference, Epidemiological Reasoning, And Big Data

Shojaee, A.; Gomez Villalobos, J.; Wang, X.; Kaminski, N.; Siner, J.; takyar, s.; Zhao, H.; Chupp, G.

10.1101/439117 — epidemiology — Posted on 2018-10-11

1890 Adjustment for index event bias in genome-wide association studies of subsequent events

Dudbridge, F.; Allen, R. J.; Sheehan, N. A.; Schmidt, A. F.; Lee, J. C.; Jenkins, R. G.; Wain, L. V.; Hingorani, A. D.; Patel, R. S.

10.1101/436063 — epidemiology — Posted on 2018-10-11

1891 Phenotypic and genotypic resistance to commonly used insecticides in Aedes aegypti among four cities in southern Ecuador

Ryan, S.; Mundis, S. J.; Aguirre, A.; Lippi, C. A.; Beltran, E.; Heras, F.; Stewart-Ibarra, A. M.; Neira, M. V.

10.1101/441360 — epidemiology — Posted on 2018-10-11

1892 Dosage Matters: A Randomized Controlled Trial of Rehabilitation Dose in the Chronic Phase after Stroke

Winstein, C.; Kim, B.; Kim, S.; Martinez, C.; Schweighofer, N.

10.1101/441253 — clinical trials — Posted on 2018-10-11

1893 The design and evaluation of a Bayesian system for detecting and characterizing outbreaks of influenza

Millett, N. E.; Aronis, J. M.; Wagner, M. M.; Tsui, F.; Ye, Y.; Ferraro, J. P.; Haug, P. J.; Gesteland, P. H.; Cooper, G. F.

10.1101/435727 — epidemiology — Posted on 2018-10-11

1894 Gini coefficients for measuring the distribution of sexually transmitted infections among individuals with different levels of sexual activity

Gsteiger, S.; Low, N.; Sonnenberg, P.; Mercer, C. H.; Althaus, C.

10.1101/438127 — epidemiology — Posted on 2018-10-11

1895 Regulation of evidence accumulation by pupil-linked arousal processes

Keung, W.; Hagen, T. A.; Wilson, R. C.

10.1101/309526 — neuroscience — Posted on 2018-10-11

1896 Predicting and Analyzing the Response to Selection on Correlated Characters

Van Dooren, T.; Beldade, P.; Allen, C.

10.1101/348896 — evolutionary biology — Posted on 2018-10-11

1897 Wide-area all-optical neurophysiology in acute brain slices

Farhi, S. L.; Parot, V. J.; Grama, A.; Yamagata, M.; Abdelfattah, A. S.; Adam, Y.; Lou, S.; Kim, J. J.; Campbell, R. E.; Cox, D. D.; Cohen, A. E.

10.1101/433953 — neuroscience — Posted on 2018-10-11

1898 jouvence, a new small nucleolar RNA required in the gut extends lifespan in Drosophila

Mellottee, L.; Soule, S.; Arab, A.; Chen, C.; Martin, J.-R.

10.1101/441121 — genetics — Posted on 2018-10-11

1899 Elevated de novo fatty acid biosynthesis gene expression promotes melanoma cell survival and drug resistance

Wu, S.; Naar, A.

10.1101/441303 — cancer biology — Posted on 2018-10-11

1900 Hidden ‘risk’ in polygenic scores: clinical use today could exacerbate health disparities

Martin, A. R.; Kanai, M.; Kamatani, Y.; Okada, Y.; Neale, B. M.; Daly, M. J.

10.1101/441261 — genetics — Posted on 2018-10-11

1901 Tibanna: software for scalable execution of portable pipelines on the cloud

Lee, S.; Johnson, J.; Vitzthum, C.; Kırlı, K.; Alver, B. H.; Park, P. J.

10.1101/440974 — bioinformatics — Posted on 2018-10-11

1902 A confirmation bias in perceptual decision-making due to hierarchical approximate inference

Lange, R. D.; Chattoraj, A.; Beck, J.; Yates, J.; Haefner, R.

10.1101/440321 — animal behavior and cognition — Posted on 2018-10-11

1903 Multi-Scale Neural Sources of EEG: Genuine, Equivalent, and Representative. A Tutorial Review

Nunez, P. L.; Nunez, M. D.; Srinivasan, R.

10.1101/391318 — neuroscience — Posted on 2018-10-11

1904 Minimal phenotyping yields GWAS hits of low specificity for major depression

Cai, N.; Kendler, K.; Flint, J.

10.1101/440735 — genetics — Posted on 2018-10-11

1905 Specificity of RNA folding and its association with evolutionarily adaptive mRNA secondary structure

Yu, G.; Zhu, H.; Chen, X.; Yang, J.-R.

10.1101/441006 — evolutionary biology — Posted on 2018-10-11

1906 Aminoacyl tRNA Synthetases as Malarial Drug Targets: A Comparative Bioinformatics Study

Nyamai, D. W.; Tastan Bishop, O.

10.1101/440891 — bioinformatics — Posted on 2018-10-11

1907 Attenuating the DNA damage response to double strand breaks is neuroprotective

Tuxworth, R. I.; Taylor, M. J.; Martin Anduaga, A.; Hussien-Ali, A.; Chatzimatthaiou, S.; Longland, J.; Thompson, A. M.; Almutiri, S.; Alifragis, P.; Kyriacou, C.; Kysela, B.; Ahmed, Z.

10.1101/440636 — neuroscience — Posted on 2018-10-11

1908 Flux-Balance Based Modeling of Biofilm Communities

Zhang, T.; Parker, A.; Carlson, R. P.; Stewart, P. S.; Klapper, I.

10.1101/441311 — microbiology — Posted on 2018-10-11

1909 Bayesian Estimation of Species Divergence Times Using Correlated Quantitative Characters

Alvarez-Carretero, S.; Goswami, A.; Yang, Z.; dos Reis, M.

10.1101/441105 — evolutionary biology — Posted on 2018-10-11

1910 Phase Separation of YAP Reprograms Cells for Long-term YAP Target Gene Expression

Cai, D.; Sukenik, S.; Feliciano, D.; Gruebele, M.; Lippincott-Schwartz, J.

10.1101/438416 — cell biology — Posted on 2018-10-11

1911 The mouse HP1 proteins are not required for cell viability but are essential for preventing liver tumorigenesis

Saksouk, N.; Hajdari, S.; Pratlong, M.; Barrachina, C.; Zavoriti, A.; Sarrazin, A.; Pirot, N.; Noël, J.-Y.; Khellaf, L.; Fabbrizio, E.; Cammas, F. M.

10.1101/441279 — cancer biology — Posted on 2018-10-11

1912 Synthetic essentiality of metabolic regulator PDHK1 in PTEN-deficient cells and cancers

Chatterjee, N.; Pazarentzos, E.; Hrustanovic, G.; Lin, L.; Verschueren, E.; Johnson, J. R.; Hofree, M.; Yan, J. J.; Olivas, V.; Newton, B. W.; Dollen, J. V.; Earnshaw, C. H.; Flanagan, J.; Chan, E.; Asthana, S.; Ideker, T.; Wu, W.; Mayekar, M. K.; Suzuki, J.; Barad, B.; Kirichok, Y.; Fraser, J.; Weiss, W. A.; Krogan, N. J.; Tulpule, A.; Sabnis, A. J.; Bivona, T. G.

10.1101/441295 — cancer biology — Posted on 2018-10-11

1913 Empirically-Derived Synthetic Populations to Overcome Small Sample Sizes

Fowler, E. E.; Berglund, A.; Sellers, T. A.; Eschrich, S.; Heine, J.

10.1101/441238 — bioinformatics — Posted on 2018-10-11

1914 The Hex-Maze: A previous knowledge task for mice

Bokeria, L.; Eichler, R.; Brincker, L.; Alonso, A.; Samanta, A.; Guardamagna, M.; Spooner, P.; Battaglia, F.; Genzel, L.

10.1101/441048 — animal behavior and cognition — Posted on 2018-10-11

1915 A Multi-State Birth-Death model for Bayesian inference of lineage-specific birth and death rates

Barido-Sottani, J.; Vaughan, T. G.; Stadler, T.

10.1101/440982 — evolutionary biology — Posted on 2018-10-11

1916 Phylogenomics of the major tropical plant family Annonaceae using targeted enrichment of nuclear genes

Couvreur, T. L. P.; Helmstetter, A. J.; Koenen, E. E.; Bethume, K.; Brandao, R. D.; Little, S.; Sauquet, H.; Erkens, R. H. J.

10.1101/440925 — evolutionary biology — Posted on 2018-10-11

1917 Sequential Specification of Oligodendrocyte and NG2 Cell Fates by Distinct Levels of Hedgehog Signaling

Ravanelli, A.; Kearns, C.; Powers, R.; Wang, Y.; Hines, J.; Donaldson, M.; Appel, B.

10.1101/377671 — developmental biology — Posted on 2018-10-11

1918 Illumina-based sequencing framework for accurate detection and mapping of influenza virus defective interfering particle-associated RNAs

Alnaji, F. G.; Holmes, J. R.; Rendon, G.; Vera, J. C.; Fields, C. J.; Martin, B. E.; Brooke, C. B.

10.1101/440651 — microbiology — Posted on 2018-10-11

1919 Drosophila Mutants that Are Motile but Respond Poorly to All Stimuli Tested: Mutants in RNA Splicing and RNA Helicase, Mutants in The Boss

Vang, L. L.; Adler, J.

10.1101/066423 — animal behavior and cognition — Posted on 2018-10-11

1920 Individual differences in response precision correlate with adaptation bias

Mattar, M. G.; Carter, M. V.; Zebrowitz, M. S.; Thompson-Schill, S. L.; Aguirre, G. K.

10.1101/285973 — neuroscience — Posted on 2018-10-11

1921 Integrating brain methylome with GWAS for psychiatric risk gene discovery

Han, S.; Lin, Y.; Wang, M.; Goes, F. S.; Tan, K.; Zandi, P.; Hyde, T.; Weinberger, D. R.; Potash, J. B.; Kleinman, J. E.; Jaffe, A. E.

10.1101/440206 — genetics — Posted on 2018-10-11

1922 A rapid and robust method for single cell chromatin accessibility profiling

Chen, X.; Miragaia, R.; Natarajan, K. N.; Teichmann, S. A.

10.1101/309831 — genomics — Posted on 2018-10-11

1923 Discovery of allosteric non-covalent KRAS inhibitors that bind with sub-micromolar affinity and disrupt effector binding

McCarthy, M. J.; Pagba, C. V.; Prakash, P.; Naji, A.; van der Hoeven, D.; Liang, H.; Gupta, A. K.; Zhou, Y.; Cho, K.-J.; Hancock, J. F.; Gorfe, A. A.

10.1101/440487 — biochemistry — Posted on 2018-10-11

1924 Artificial neural network filters for enhancing 3D optical microscopy images of neurites

Wang, S.-L.; Mousavi Kahaki, S. M.; Stepanyants, A.

10.1101/441071 — neuroscience — Posted on 2018-10-11

1925 Adipokines contribute to central-obesity related reductions in myelin-sensitive MRI indices in the fornix.

Metzler-Baddeley, C.; Mole, J.; Leonaviciute, E.; Sims, R.; Kidd, E. J.; Ertefai, B.; Kelso-Mitchell, A.; Gidney, F.; Fasano, F.; Evans, J.; Jones, D. K.; Baddeley, R. J.

10.1101/440990 — neuroscience — Posted on 2018-10-11

1926 The role of climate change education on individual lifetime carbon emissions

Cordero, E. C.; Centeno, D.; Todd, A. M.

10.1101/441170 — scientific communication and education — Posted on 2018-10-11

1927 Bodily sensations in social scenarios: Where in the body?

Novembre, G.; Zanon, M.; Morrison, I.; Ambron, E.

10.1101/441212 — neuroscience — Posted on 2018-10-11

1928 Testing the unitary theory of language lateralisation using functional transcranial Doppler sonography in adults

Woodhead, Z. V. J.; Bradshaw, A. R.; Wilson, A. C.; Thompson, P. A.; Bishop, D. V. M.

10.1101/437939 — neuroscience — Posted on 2018-10-11

1929 Deficient skeletal muscle regeneration after injury induced by a Clostridium perfringens strain associated with gas gangrene

Zuniga-Pereira, A. M.; Santamaria, C.; Gutierrez, J. M.; Alape-Giron, A.; Flores-Diaz, M.

10.1101/441204 — microbiology — Posted on 2018-10-11

1930 Prevalence and correlates of anemia among children aged 6-23 months in Wolaita Zone, Southern Ethiopia

Alemayehu, M. A.; Meskele, M.; Alemayehu, B. A.; Yakob, B.

10.1101/441196 — epidemiology — Posted on 2018-10-11

1931 Conditioned place avoidance using encapsulated calcium propionate as an appetite suppressant for broiler breeders

Arrazola, A.; Torrey, S.

10.1101/441220 — animal behavior and cognition — Posted on 2018-10-11

1932 Thymic Stromal Lymphopoietin Promotes Proliferation and Contractility of Human Pulmonary Artery Smooth Muscle

Prakash, Y. S.; Thompson, M. A.; Sathish, V.; Manlove, L.; Roos, B.; Wang, B.; Vassallo, R.; Miller, J.; Pabelick, C.

10.1101/441188 — physiology — Posted on 2018-10-11

1933 Musical interaction is influenced by underlying predictive models and musical expertise

Heggli, O. A.; Konvalinka, I.; Kringelbach, M. L.; Vuust, P.

10.1101/440271 — neuroscience — Posted on 2018-10-11

1934 Comparisons of a Novel Air Sampling Filter Material, Wash Buffers and Extraction Methods in the Detection and Quantification of Influenza Virus

Thedell, T.; Boles, C. L.; Cwiertny, D. W.; Brown, G. D.; Qian, J.; Nonnenmann, M. W.

10.1101/441154 — microbiology — Posted on 2018-10-11

1935 Calotropis gigantea extract induces apoptosis through extrinsic/intrinsic pathways and upregulation of reactive oxygen species in non-small-cell lung cancer cells

Yoon, D.-Y.; Lee, J.; Jang, H.; Bak, Y.; Shin, J.-W.; Jin, H.; Kim, Y.-I.; Ryu, H. W.; Oh, R.

10.1101/441162 — cancer biology — Posted on 2018-10-11

1936 Investigation of novel functions of three genes in oriental river prawn, Macrobrachium nipponense: Molecular Cloning, Expression, and In situ Hybridization Analysis

Jin, S.; Fu, H.; Hu, Y.; Sun, s.; Jiang, S.; Xiong, Y.; Qiao, H.; Zhang, W.; Gong, Y.; Wu, Y.

10.1101/441147 — zoology — Posted on 2018-10-11

1937 Five breaks synchrony while six keeps synchrony: individual difference in the coordinated pattern of five- and six-armed brittle stars

Wakita, D.; Hayase, Y.; Aonuma, H.

10.1101/340471 — physiology — Posted on 2018-10-11

1938 Activation of the endoplasmic reticulum unfolded protein response reverses an inflammation-like response to cytoplasmic DNA

Williams, A.; Heider, F.; Messling, J.-E.; Bloch, W.; Schumacher, B.

10.1101/440883 — cell biology — Posted on 2018-10-11

1939 A molecular mechanism for salt stress-induced microtubule array formation in Arabidopsis

Kesten, C.; Wallmann, A.; Schneider, R.; McFarlane, H. E.; Diehl, A.; Abbas Khan, G.; van Rossum, B.-J.; Lampugnani, E. R.; Cremer, N.; Schmieder, P.; Ford, K. L.; Seiter, F.; Heazlewood, J. L.; Sanchez-Rodriguez, C.; Oschkinat, H.; Persson, S.

10.1101/431031 — cell biology — Posted on 2018-10-11

1940 Improving the accuracy of two-sample summary data Mendelian randomization: moving beyond the NOME assumption

Bowden, J.; Del Greco M, F.; Minelli, C.; Lawlor, D.; Zhao, Q.; Sheehan, N.; Thompson, J.; Davey Smith, G.

10.1101/159442 — epidemiology — Posted on 2018-10-11

1941 Spheroid culture of mesenchymal stromal cells results in morpho-rheological properties appropriate for improved microcirculation

Tietze, S.; Krater, M.; Jacobi, A.; Taubenberger, A.; Herbig, M.; Wehner, R.; Schmitz, M.; Otto, O.; List, C.; Kaya, B.; Wobus, M.; Bornhauser, M.; Guck, J.

10.1101/440966 — biophysics — Posted on 2018-10-11

1942 Comprehensive Benchmarking and Integration of Tumour Microenvironment Cell Estimation Methods

Jimenez-Sanchez, A.; Cast, O.; Miller, M.

10.1101/437533 — bioinformatics — Posted on 2018-10-11

1943 Comprehensive analysis of intra- and interpatient evolution of enterovirus D68 by whole-genome deep sequencing

Dyrdak, R.; Mastafa, M.; Hodcroft, E.; Neher, R.; Albert, J.

10.1101/420836 — microbiology — Posted on 2018-10-11

1944 Emergent sub-population behavior uncovered with a community dynamic metabolic model of Escherichia coli diauxic growth

Succurro, A.; Segre, D.; Ebenhöh, O.

10.1101/291492 — systems biology — Posted on 2018-10-11

1945 Can Metabolic Thresholds be used as Exercise Intensity Markers in Adult men with Obesity?

Peric, R.; Nikolovski, Z.

10.1101/440958 — physiology — Posted on 2018-10-11

1946 The neuronal ceroid lipofuscinosis protein Cln7 regulates neural development from the post-synaptic cell

Connolly, K. B.; O'Hare, M. B.; Mohammed, A.; Aitchison, K. C.; Anthoney, N. C.; Roberts, A. L.; Taylor, M. J.; Stewart, B. A.; Tuxworth, R. I.; Tear, G.

10.1101/278895 — developmental biology — Posted on 2018-10-11

1947 Δ9-tetrahydrocannabinol negatively regulates neurite outgrowth and Akt signaling in hiPSC-derived cortical neurons.

Shum, C.; Dutan, L.; Buckley, N. J.; Price, J.; Bhattacharyya, S.; Srivastava, D. P.

10.1101/440909 — neuroscience — Posted on 2018-10-11

1948 The detection of novel and resident marine non-indigenous species using environmental DNA metabarcoding of seawater and sediment

Holman, L. E.; de Bruyn, M.; Creer, S.; Carvalho, G.; Robidart, J.; Rius, M.

10.1101/440768 — molecular biology — Posted on 2018-10-11

1949 A simple microbiome in esophagus and gills of the European common cuttlefish, Sepia officinalis

Lutz, H. L.; Ramirez-Puebla, T.; Abbo, L.; Schlundt, C.; Sjaarda, A. K.; Durand, A.; Hanlon, R. T.; Gilbert, J.; Mark Welch, J. L.

10.1101/440677 — microbiology — Posted on 2018-10-11

1950 Brown rat demography reveals pre-commensal structure in eastern Asia prior to expansion into Southeast Asia during the Song dynasty

Puckett, E. E.; Munshi-South, J.

10.1101/249862 — evolutionary biology — Posted on 2018-10-11

1951 Solving the riddle of the evolution of Shine-Dalgarno based translation in chloroplasts

Weiner, I.; Shahar, N.; Marcu, P.; Yacoby, I.; Tuller, T.

10.1101/440842 — plant biology — Posted on 2018-10-11

1952 The causal structure of age-dependent limbic decline: fornix white matter glia damage causes hippocampal grey matter damage, not vice versa.

Metzler-Baddeley, C.; Mole, J. P.; Sims, R.; Fasano, F.; Evans, J.; Jones, D. K.; Aggleton, J. P.; Baddeley, R. J.

10.1101/440917 — neuroscience — Posted on 2018-10-11

1953 NAP (davunetide) preferential interaction with dynamic 3-repeat Tau explains differential protection in selected tauopathies

Ivashko-Pachima, Y.; Maor, M.; Gozes, I.

10.1101/440941 — neuroscience — Posted on 2018-10-11

1954 Harmonization of resting-state functional MRI data across multiple imaging sites via the separation of site differences into sampling bias and measurement bias

Yamashita, A.; Yahata, N.; Itahashi, T.; Lisi, G.; Yamada, T.; Ichikawa, N.; Takamura, M.; Yoshihara, Y.; Kunimatsu, A.; Okada, N.; Yamagata, H.; Matsuo, K.; Hashimoto, R.; Okada, G.; Sakai, Y.; Morimoto, J.; Narumoto, J.; Shimada, Y.; Kasai, K.; Kato, N.; Takahashi, H.; Okamoto, Y.; Tanaka, S. C.; Yamashita, O.; Kawato, M.; Imamizu, H.

10.1101/440875 — neuroscience — Posted on 2018-10-11

1955 The Diagnostic Potential & Interactive Dynamics of the Colorectal Cancer Virome

Hannigan, G. D.; Duhaime, M. B.; Ruffin, M. T.; Koumpouras, C. C.; Schloss, P. D.

10.1101/152868 — microbiology — Posted on 2018-10-11

1956 Evidence for bias of genetic ancestry in resting state functional MRI

Altmann, A.; Mourao-Miranda, J.

10.1101/440776 — neuroscience — Posted on 2018-10-11

1957 Light induced synaptic vesicle autophagy

Hoffmann, S.; Orlando, M.; Andrzejak, E.; Trimbuch, T.; Rosenmund, C.; Ackermann, F.; Garner, C. C.

10.1101/440719 — neuroscience — Posted on 2018-10-11

1958 Feeding rapidly alters microbiome composition and gene transcription in the clownfish gut

Parris, D. J.; Morgan, M. M.; Stewart, F. J.

10.1101/440669 — microbiology — Posted on 2018-10-11

1959 Evolutionary characteristics of intergenic transcribed regions indicate widespread noisy transcription in the Poaceae

Lloyd, J. P.; Bowman, M. J.; Azodi, C. B.; Moghe, G. D.; Childs, K. L.; Shiu, S.-H.

10.1101/440933 — genomics — Posted on 2018-10-11

1960 Dynamic load balancing enables large-scale flux variability analysis

Ben Guebila, M.

10.1101/440701 — bioinformatics — Posted on 2018-10-11

1961 Classifying cold stress responses of inbred maize seedlings using RGB imaging

Enders, T. A.; St. Dennis, S.; Oakland, J.; Callen, S. T.; Gehan, M. A.; Miller, N. D.; Spalding, E. P.; Springer, N. M.; Hirsch, C. D.

10.1101/432039 — plant biology — Posted on 2018-10-11

1962 The ghr-miR164 and GhNAC100 module participates in cotton plant defence against Verticillium dahliae

Wu, J.; Hu, G.; Lei, Y.; Wang, L.; Liu, J.; Tang, Y.; Zhang, Z.; Chen, A.; Peng, Q.; Yang, Z.

10.1101/440826 — molecular biology — Posted on 2018-10-11

1963 The Infectious Bronchitis Virus Coronavirus Envelope Protein Alters Golgi pH to Protect Spike Protein and Promote Release of Infectious Virus

Westerbeck, J. W.; Machamer, C. E.

10.1101/440628 — microbiology — Posted on 2018-10-11

1964 Illumina-based sequencing framework for accurate detection and mapping of influenza virus defective interfering particle-associated RNAs

Alnaji, F. G.; Holmes, J. R.; Rendon, G.; Vera, J. C.; Fields, C. J.; Martin, B. E.; Brooke, C. B.

10.1101/440651 — microbiology — Posted on 2018-10-11

1965 The key parameters that govern translation efficiency

Erdmann-Pham, D. D.; Dao Duc, K.; Song, Y. S.

10.1101/440693 — genomics — Posted on 2018-10-11

1966 Assessing reliability of intra-tumor heterogeneity estimates from single sample whole exome sequencing data

Abecassis, J.; Hamy, A.-S.; Laurent, C.; Sadacca, B.; Bonsang-Kitzis, H.; Reyal, F.; Vert, J.-P.

10.1101/440750 — bioinformatics — Posted on 2018-10-11

1967 Compressing Streams of Phylogenetic Trees

Trefzer, A.; Stamatakis, A.

10.1101/440644 — bioinformatics — Posted on 2018-10-11

1968 Decreased kinesin-1 mitigates NMDA-induced exicitotoxicity and ischemia-evoked neurodegeneration

Lin, R.; Duan, Z.; Sun, H.; Fung, M.-L.; Chen, H.; Wang, J.; Lau, C.-F.; Yang, D.; Liu, Y.; Ni, Y.; Wang, Z.; Cui, J.; Wu, W.-T.; Yung, W.-H.; Chan, Y. S.; Lo, A. C. Y.; Xia, J.; Shen, J.; Huang, J.-D.

10.1101/440800 — neuroscience — Posted on 2018-10-11

1969 Single step, high efficiency CRISPR-Cas9 genome editing in primary human disease-derived fibroblasts

Martufi, M.; Good, R. B.; Rapiteanu, R.; Schmidt, T.; Patili, E.; Tvermosegaard, K.; Nanthakumar, C. B.; Betts, J.; Blanchard, A. D.; Maratou, K.

10.1101/440099 — molecular biology — Posted on 2018-10-11

1970 Specification of diverse cell types during early neurogenesis of the mouse cerebellum

Wizeman, J. W.; Guo, Q.; Wilion, E. M.; Li, J. Y.

10.1101/440818 — developmental biology — Posted on 2018-10-11

1971 Streptococcus agalactiae induces placental macrophages to release extracellular traps loaded with tissue remodeling enzymes via an oxidative-burst-dependent mechanism

Doster, R. S.; Sutton, J.; Rogers, L. M.; Aronoff, D. M.; Gaddy, J.

10.1101/440685 — microbiology — Posted on 2018-10-11

1972 The origin of fungi-culture in termites was associated with a shift to a mycolytic gut bacteria community

Hu, H.; da Costa, R. R.; Pilgaard, B.; Schiott, M.; Lange, L.; Poulsen, M.

10.1101/440172 — ecology — Posted on 2018-10-11

1973 Electrochemical Evaluation of Ion Substituted-Hydroxyapatite on HeLa Cells Plasma Membrane Potential

Asimeng, B. O.; Tiburu, E. K.; Effah Kuafmann, E.; Peamka, L.; Hayford, C. F.; Essien-Baidoo, S.; Dzikunu, O. K.; Anani, P. A.

10.1101/440214 — biophysics — Posted on 2018-10-11

1974 Computational noise in reward-guided learning drives behavioral variability in volatile environments

Findling, C.; Skvortsova, V.; Dromnelle, R.; Palminteri, S.; Wyart, V.

10.1101/439885 — neuroscience — Posted on 2018-10-11

1975 Factors influencing leaf- and root-associated communities of bacteria and fungi across 33 plant orders in a grassland

Toju, H.; Kurokawa, H.; Kenta, T.

10.1101/439646 — ecology — Posted on 2018-10-11

1976 Ablation of NMDA receptors in dopamine neurons disrupts attribution of incentive salience to reward-paired stimuli

Cieslak, P. E.; Rodriguez Parkitna, J.

10.1101/439745 — animal behavior and cognition — Posted on 2018-10-11

1977 In vivo phosphoproteomics reveals pathogenic signaling changes in diabetic islets

Sacco, F.; Seelig, A.; Humphrey, S.; Krahmer, N.; Volta, F.; Reggio, A.; Gerdes, J.; Mann, M.

10.1101/439638 — systems biology — Posted on 2018-10-11

1978 Host Genetic Background and Gut Microbiota Contribute to Differential Metabolic Responses to High Fructose Consumption in Mice

Ahn, I.; Lang, J.; Olsen, C.; Ying, Z.; Zhang, G.; Byun, H. R.; Zhao, Y.; Kurt, Z.; Lusis, A. J.; Hsaio, E.; Gomez-Pinilla, F.; Yang, X.

10.1101/439786 — systems biology — Posted on 2018-10-11

1979 Single-cell transcriptomics of the aged mouse brain reveals convergent, divergent and unique aging signatures

Ximerakis, M.; Lipnick, S. L.; Simmons, S. K.; Adiconis, X.; Innes, B. T.; Dionne, D.; Nguyen, L.; Mayweather, B. A.; Ozek, C.; Niziolek, Z.; Butty, V. L.; Isserlin, R.; Buchanan, S. M.; Levine, S. R.; Regev, A.; Bader, G. D.; Levin, J. Z.; Rubin, L. L.

10.1101/440032 — neuroscience — Posted on 2018-10-11

1980 Microbial contamination screening and interpretation for biological laboratory environments

Ning, K.; Li, X.; Zhu, X.; Wang, W.

10.1101/439570 — microbiology — Posted on 2018-10-11

1981 Existence and implications of population variance structure

Musharoff, S.; Park, D. S.; Dahl, A.; Galanter, J. M.; Liu, X.; Huntsman, S.; Eng, C.; Burchard, E. G.; Ayroles, J. F.; Zaitlen, N.

10.1101/439661 — genetics — Posted on 2018-10-11

1982 Modelling sex-specific crossover patterning in Arabidopsis

Lloyd, A.; Jenczewski, E.

10.1101/440255 — genetics — Posted on 2018-10-11

1983 A phylum-wide survey reveals multiple independent gains of head regeneration ability in Nemertea

Zattara, E. E.; Fernandez-Alvarez, F. A.; Hiebert, T. C.; Bely, A. E.; Norenburg, J. L.

10.1101/439497 — evolutionary biology — Posted on 2018-10-11

1984 Multi-allele species reconstruction using ASTRAL

Rabiee, M.; Sayyari, E.; Mirarab, S.

10.1101/439489 — bioinformatics — Posted on 2018-10-11

1985 A multifaceted approach for analyzing complex phenotypic data in rodent models of autism

Das, I.; Estevez, M. A.; Sarkar, A. A.; Basu, S.

10.1101/439455 — bioinformatics — Posted on 2018-10-11

1986 Bioorthogonal Antigens Allow The Study Of Intracellular Processing And Presentation Of Post-Translationally Modified Antigens

Araman, C. M. C.; Pieper-Pournara, L.; Kampstra, A. S. B.; Marqvorsen, M. H. S.; Nascimento, C.; van der Wulp, W.; Groenewold, M. G. J. M.; Camps, M. G. M.; Ossendorp, F.; Toes, R.; van Kasteren, S. I.

10.1101/439323 — immunology — Posted on 2018-10-11

1987 SMAP: exploiting high-throughput sequencing data of patient derived xenografts

Blum, Y.; de Reynies, A.; Dusetti, N.; Iovanna, J.; Marisa, L.; Nicolle, R.

10.1101/440008 — genomics — Posted on 2018-10-11

1988 Benchmarking network propagation methods for disease gene identification

Picart-Armada, S.; Barrett, S. J.; Wille, D. R.; Perera-Lluna, A.; Gutteridge, A.; Dessailly, B. H.

10.1101/439620 — genetics — Posted on 2018-10-11

1989 Human iPSC-derived retinal pigment epithelium: a model system for identifying and functionally characterizing causal variants at AMD risk loci

Smith, E. N.; D'Antonio-Chronowska, A.; Greenwald, W. W.; Borja, V.; Aguiar, L. R.; Pogue, R.; Matsui, H.; Borooah, S.; D'Antonio, M.; Ayyagari, R.; Frazer, K. A.

10.1101/440230 — genetics — Posted on 2018-10-11

1990 Spatiotemporal patterns of dunlin (Calidris alpina) in continental lakes of the Iberian Peninsula

Goncalves, M. S. S.; Gil-Delgado, J. A.; Gosalvez, R. U.; Lopez-Iborra, G. M.; Ponz, A.; Pons, P.; Velasco, A.

10.1101/434886 — ecology — Posted on 2018-10-11

1991 First detection of a highly invasive freshwater amphipod (Crangonyx floridanus) in the United Kingdom

Mauvisseau, Q.; Davy-Bowker, J.; Bryson, D.; Souch, G. R.; Burian, A.; Sweet, M.

10.1101/437301 — ecology — Posted on 2018-10-11

1992 Cytoscape stringApp: Network analysis and visualization of proteomics data

Doncheva, N. T.; Morris, J. H.; Gorodkin, J.; Jensen, L. J.

10.1101/438192 — bioinformatics — Posted on 2018-10-11

1993 Encoding of an engram for food location by satiety-promoting Drd2 hippocampal neurons

Azevedo, E. P.; Pomeranz, L.; Cheng, J.; Schneeberger, M.; Stern, S.; Doerig, K.; Greengard, P.; Friedman, J. M.

10.1101/439349 — animal behavior and cognition — Posted on 2018-10-11

1994 Vocal motor experiences consolidate the vocal motor circuitry and accelerate future vocal skill development

Vellema, M.; Rocha, M.; Bascones, S.; Zsebok, S.; Dreier, J.; Leitner, S.; Van der Linden, A.; Brewer, J.; Gahr, M.

10.1101/440388 — animal behavior and cognition — Posted on 2018-10-11

1995 An inexpensive air stream temperature controller and its use to facilitate temperature controlled behavior in living Drosophila

Sangston, R. M.; Hirsh, J.

10.1101/439414 — animal behavior and cognition — Posted on 2018-10-11

1996 Coupled Reaction Networks for Noise Suppression

Xiao, F.; Fang, M.; Doyle, J. C.

10.1101/440453 — systems biology — Posted on 2018-10-11

1997 Differential Metabolic and Multi-tissue Transcriptomic Responses to Fructose Consumption among Genetically Diverse Mice

Zhang, G.; Byun, H. R.; Ying, Z.; Zhao, Y.; Hong, J.; Shu, L.; Gomez-Pinilla, F.; Yang, X.

10.1101/439562 — systems biology — Posted on 2018-10-11

1998 Signal Transduction in Human Cell Lysate via Dynamic RNA Nanotechnology

Hochrein, L. M.; Ge, T. J.; Schwarzkopf, M.; Pierce, N. A.

10.1101/439273 — synthetic biology — Posted on 2018-10-11

1999 Positive feedback and feedforward loops between PERIANTHIA, WUSCHEL-RELATED HOMEOBOX5 and GRF-INTERACTING FACTOR 1 modulate gene expression and function in the Arabidopsis root

Fisher, A. P.; Clark, N. M.; Sozzani, R.

10.1101/439851 — plant biology — Posted on 2018-10-11

2000 OsJAZ9 overexpression improves potassium deficiency tolerance in rice by modulating jasmonic acid levels and signaling

Singh, A. P.; Pandey, B. K.; Mehra, P.; Chandan, R. K.; Jha, G.; Giri, J.

10.1101/440024 — plant biology — Posted on 2018-10-11

2001 Effects of Oral Domoic Acid Exposure on Maternal Reproduction and Infant Birth Characteristics in a Preclinical Nonhuman Primate Model

Burbacher, T. M.; Grant, K. S.; Petroff, R.; Shum, S.; Crouthamel, B.; Stanley, C.; McKain, N.; Jing, J.; Isoherranen, N.

10.1101/440354 — pharmacology and toxicology — Posted on 2018-10-11

2002 Gene Expression Correlates of the Cortical Network Underlying Sentence Processing

Kong, X.-Z.; Tzourio-Mazoyer, N.; Joliot, M.; Fedorenko, E.; Liu, J.; Fisher, S. E.; Francks, C.

10.1101/439984 — neuroscience — Posted on 2018-10-11

2003 Anticipatory neural activity improves the decoding accuracy for dynamic head-direction signals

Zirkelbach, J.; Stemmler, M.; Herz, A.

10.1101/439950 — neuroscience — Posted on 2018-10-11

2004 Extended dengue virus panel: application to antiviral compounds studies

Touret, F.; Baronti, C.; De Lamballerie, X.; Querat, G.

10.1101/439695 — microbiology — Posted on 2018-10-11

2005 Comparative whole-genome analysis reveals genetic adaptation of the invasive pinewood nematode

Li, J.; Cheng, X.; Lin, R.; Xiao, S.; Yi, X.; Mao, Z.; Zhang, X.; Ling, J.; Kou, X.; Yan, X.; Luo, J.; Cheng, F.; Li, Y.; Wang, L.; Chen, N.; Xie, B.

10.1101/439612 — genomics — Posted on 2018-10-11

2006 Reduced representation sequencing for symbiotic anthozoans: are reference genomes necessary to eliminate endosymbiont contamination and make robust phylogeographic inference?

Titus, B. M.; Daly, M.

10.1101/440289 — genomics — Posted on 2018-10-11

2007 Inferring Demography and Selection in Organisms Characterized by Skewed Offspring Distributions

Sackman, A. M.; Harris, R. B.; Jensen, J. D.

10.1101/440404 — genetics — Posted on 2018-10-11

2008 LPM: a latent probit model to characterize the relationship among complex traits using summary statistics from multiple GWASs and functional annotations

Ming, J.; Wang, T.; Yang, C.

10.1101/439133 — genetics — Posted on 2018-10-11

2009 Genomic signatures of extensive inbreeding in Isle Royale wolves, a population on the threshold of extinction

Robinson, J. A.; Räikkönen, J.; Vucetich, L. M.; Vucetich, J. A.; Peterson, R. O.; Lohmueller, K. E.; Wayne, R. K.

10.1101/440511 — evolutionary biology — Posted on 2018-10-11

2010 Comparative analysis of active sites in P-loop nucleoside triphosphatases suggests an ancestral activation mechanism

Shalaeva, D.; Cherepanov, D.; Galperin, M. Y.; Mulkidjanian, A. Y.

10.1101/439992 — evolutionary biology — Posted on 2018-10-11

2011 Dropout-Enabled Ensemble Learning for Multi-Scale Biomedical Data

Momeni, A.; Thibault, M.; Gevaert, O.

10.1101/440362 — bioinformatics — Posted on 2018-10-11

2012 Estimating Residue-Specific Accuracies of Protein Structure Models Using Molecular Dynamics Simulations

Hu, J.-H.; Xun, S.-N.; Wu, H.-N.; Wu, Y.-D.; Jiang, F.

10.1101/439760 — bioinformatics — Posted on 2018-10-11

2013 Integrating brain methylome with GWAS for psychiatric risk gene discovery

Han, S.; Lin, Y.; Wang, M.; Goes, F. S.; Tan, K.; Zandi, P.; Hyde, T.; Weinberger, D. R.; Potash, J. B.; Kleinman, J. E.; Jaffe, A. E.

10.1101/440206 — bioinformatics — Posted on 2018-10-11

2014 NetGO: Improving Large-scale Protein Function Prediction with Massive Network Information

You, R.; Yao, S.; Huang, X.; Sun, F.; Mamitsuka, H.; Zhu, S.

10.1101/439554 — bioinformatics — Posted on 2018-10-11

2015 Crop Information Engine and Research Assistant (CIERA) for managing genealogy, phenotypic and genotypic data for breeding programs

Yates, S.; Lague, M.; Knox, R.; Cuthbert, R.; Clarke, F.; Clarke, J.; Ruan, Y.; Jatinder, J.; Bhadauria, V.

10.1101/439505 — bioinformatics — Posted on 2018-10-11

2016 Expanding the bioluminescence reporter toolkit for plant chronobiology with NanoLUC

Urquiza-Garcia, U.; Millar, A. J.

10.1101/439844 — plant biology — Posted on 2018-10-11

2017 Biofilm Structures of Borrelia burgdorferi Not Only Display More Tolerance to Lyme Antibiotics But Also Cause More Severe Pathology In a Mouse Arthritis Model: Implications for Understanding Persistence, PTLDS and Treatment

Feng, J.; Li, T.; Zhang, Y.

10.1101/440461 — microbiology — Posted on 2018-10-11

2018 Triple oral beta-lactam containing therapy for Buruli ulcer treatment shortening

Arenaz Callao, M. P.; Gonzalez del Rio, R.; Lucia Quintana, A.; Thompson, C. J.; Mendoza-Losana, A.; Ramon-Garcia, S.

10.1101/439828 — microbiology — Posted on 2018-10-11

2019 Growth-factor like gene regulation is separable from survival and maturation in antibody secreting cells

Stephenson, S. S.; Care, M. A.; Fan, I.; Zougman, A.; Westhead, D.; Doody, G.; Tooze, R.

10.1101/439752 — immunology — Posted on 2018-10-11

2020 Intra-individual methylomics detects the impact of early-life adversity

Jiang, S.; Kamei, N.; Bolton, J. L.; Ma, X.; Stern, H. S.; Baram, T. Z.; Mortazavi, A.

10.1101/440503 — genomics — Posted on 2018-10-11

2021 Parkinson disease age of onset GWAS: defining heritability, genetic loci and a-synuclein mechanisms

Blauwendraat, C.; Heilbron, K.; Vallerga, C. L.; Bandres-Ciga, S.; von Coelln, R.; Pihlstrom, L.; Simon-Sanchez, J.; Schulte, C.; Sharma, M.; Krohn, L.; Siitonen, A.; Iwaki, H.; Leonard, H.; Noyce, A. J.; Tan, M.; Gibbs, J. R.; Hernandez, D. G.; Scholz, S. W.; Jankovic, J.; Shulman, L. M.; Lesage, S.; Corvol, J.-C.; Brice, A.; van Hilten, J. J.; Marinus, J.; The 23andMe Research Team, ; Tienari, P.; Majamaa, K.; Toft, M.; Grosset, D. G.; Gasser, T.; Heutink, P.; Shulman, J. M.; Wood, N.; Hardy, J.; Morris, H. R.; Hinds, D. A.; Gratten, J.; Visscher, P. M.; Gan-Or, Z.; Nalls, M.; Singleton, A.

10.1101/424010 — genetics — Posted on 2018-10-11

2022 Converging roles of glutamate receptors in domestication and prosociality

O'Rourke, T.; Boeckx, C.

10.1101/439869 — evolutionary biology — Posted on 2018-10-11

2023 Molecular phylogeny and diversification timing of the Nemouridae family (Insecta, Plecoptera) in the Japanese Archipelago

Gamboa, M.; Muranyi, D.; Kanmori, S.; Watanabe, K.

10.1101/440529 — evolutionary biology — Posted on 2018-10-11

2024 AMON: Annotation of metabolite origins via networks to better integrate microbiome and metabolome data

Shaffer, M.; Quinn, K.; Doenges, K.; Zhang, N.; Bokatzian, S.; Reisdorph, N.; Lozupone, C.

10.1101/439240 — bioinformatics — Posted on 2018-10-11

2025 Co-localization features for classification of tumors using mass spectrometry imaging

Inglese, P.; dos Santos Correia, G.; Pruski, P.; Glen, R. C.; Takats, Z.

10.1101/440057 — bioinformatics — Posted on 2018-10-11

2026 Population-scale proteome variation in human induced pluripotent stem cells

Mirauta, B.; Seaton, D. D.; Bensaddek, D.; Brenes, A.; Bonder, M. J.; Kilpinen, H.; HipSci consortium, ; Stegle, O.; Lamond, A.

10.1101/439216 — genomics — Posted on 2018-10-11

2027 Adaptive walks on high-dimensional fitness landscapes and seascapes with distance-dependent statistics

Agarwala, A.; Fisher, D. S.

10.1101/435669 — evolutionary biology — Posted on 2018-10-11

2028 Quantifying point-mutations in shotgun metagenomic data

Magesh, S.; Jonsson, V.; Bengtsson-Palme, J.

10.1101/438572 — bioinformatics — Posted on 2018-10-11

2029 GeneHummus: A pipeline to define gene families and their expression in legumes and beyond

Die, J. V.; Elmassry, M. M.; Leblanc, K. H.; Awe, O. I.; Dillman, A.; Busby, B.

10.1101/436659 — bioinformatics — Posted on 2018-10-11

2030 The impact of short- and long-range perception on population movements

Johnston, S.; Painter, K.

10.1101/440420 — biophysics — Posted on 2018-10-10

2031 An E2-ubiquitin thioester-driven approach to identify substrates modified with ubiquitin and ubiquitin-like molecules

Bakos, G.; Yu, L.; Gak, I. A.; Roumeliotis, T. I.; Liakopoulos, D.; Choudhary, J. S.; Mansfeld, J.

10.1101/387670 — biochemistry — Posted on 2018-10-10

2032 Bromodomain Protein, BRD4, Contributes to the Regulation of Alternative Splicing

Uppal, S.; Chen, Q.; Meerzaman, D.; Gegonne, A.; Singer, D. S.

10.1101/440297 — molecular biology — Posted on 2018-10-10

2033 Dietary sulfate-driven and gut dysbiosis-triggered breast cancer-related gene upregulation

Chen, Y.-P.; Liao, T.; Tan, L.-L.; Chen, D.-M.; Xu, Q.; Song, J.-P.; Zeng, Q.-P.

10.1101/440578 — cancer biology — Posted on 2018-10-10

2034 A wave of WNT signalling balanced by secreted inhibitors controls primitive streak formation in micropattern colonies of human embryonic stem cells

Martyn, I.; Brivanlou, A. H.; Siggia, E. D.

10.1101/440602 — developmental biology — Posted on 2018-10-10

2035 The timing of signaling events in the BMP, WNT, and Nodal cascade determines self-organized fate patterning in human gastruloids

Chhabra, S.; Liu, L.; Goh, R.; Warmflash, A.

10.1101/440164 — developmental biology — Posted on 2018-10-10

2036 Mcidas mutant mice reveal a two-step process for the specification and differentiation of multiciliated cells in mammals

Lu, H.; Anujan, P.; Zhou, F.; Zhang, Y.; Chong, Y. L.; Bingle, C. D.; Roy, S.

10.1101/439703 — developmental biology — Posted on 2018-10-10

2037 Targeted RNA NextGenSeq profiling in oncology using single molecule molecular inversion probes.

Lenting, K.; van den Heuvel, C. N.; van Ewijk, A.; Tindall, E.; Wei, G.; Kusters, B.; te Dorsthorst, M.; ter Laan, M.; Huynen, M. A.; Leenders, W. P. J.

10.1101/440065 — cancer biology — Posted on 2018-10-10

2038 Magnetophospenes in humans exposed to ELF MF up to 50 mT, a threshold study

Legros, A.; Modolo, J.; Corbacio, M.; Goulet, D.; Plante, M.; Souques, M.; Deschamps, F.; Ostiguy, G.; Lambrozo, J.; Thomas, A.

10.1101/439968 — biophysics — Posted on 2018-10-10

2039 Fast, volumetric live-cell imaging using high-resolution light-field microscopy

Li, H.; Guo, C.; Kim-Holzapfel, D.; Li, W.; Altshuller, Y.; Schroeder, B.; Liu, W.; Meng, Y.; French, J.; Takamaru, K.-I.; Frohman, M.; Jia, S.

10.1101/439315 — bioengineering — Posted on 2018-10-10

2040 Discovery of allosteric non-covalent KRAS inhibitors that bind with sub micromolar affinity and disrupt effector binding

McCarthy, M. J.; Pagba, C. V.; Prakash, P.; Naji, A.; van der Hoeven, D.; Liang, H.; Gupta, A. K.; Zhou, Y.; Cho, K.-J.; Hancock, J. F.; Gorfe, A. A.

10.1101/440487 — biochemistry — Posted on 2018-10-10

2041 Dysregulated Oscillatory Connectivity in the Visual System in Autism Spectrum Disorder

Seymour, R. A.; Rippon, G.; Gooding-Williams, G.; Schoffelen, J.-M.; Kessler, K.

10.1101/440586 — neuroscience — Posted on 2018-10-10

2042 AMPK Signaling Regulates Expression of Urea Cycle Enzymes in Response to Changes in Dietary Protein Intake

Heibel, S. K.; McGuire, P. J.; Haskins, N.; Datta Majumdar, H.; Rayavarapu, S.; Nagaraju, K.; Hathout, Y.; Brown, K.; Tuchman, M.; Caldovic, L.

10.1101/439380 — molecular biology — Posted on 2018-10-10

2043 PCF11 connects alternative polyadenylation to formation and spontaneous regression of neuroblastoma

10.1101/426536 — developmental biology — Posted on 2018-10-10

2044 The Influence of Molecular Reach and Diffusivity on the Efficacy of Membrane-Confined Reactions

Zhang, Y.; Clemens, L.; Goyette, J.; Allard, J.; Dushek, O.; Isaacson, S. A.

10.1101/439430 — biophysics — Posted on 2018-10-10

2045 New insights on human essential genes based on integrated analysis

Chen, H.; Zhang, Z.; Jiang, S.; Li, R.; Li, W.; Zhao, C.; Hong, H.; Huang, X.; Li, H.; Bo, X.

10.1101/260224 — genomics — Posted on 2018-10-10

2046 Genome-wide analyses supported by RNA-Seq reveal non-canonical splice sites in plant genomes

Pucker, B.; Brockington, S. F.

10.1101/428318 — genomics — Posted on 2018-10-10

2047 Functional clustering of dendritic activity during decision-making

Kerlin, A.; Mohar, B.; Flickinger, D.; MacLennan, B. J.; Davis, C.; Spruston, N.; Svoboda, K.

10.1101/440396 — neuroscience — Posted on 2018-10-10

2048 A gradient in inner pressure of germline cells controls overlaying epithelial cell morphogenesis

Lamire, L.-A.; Milani, P.; Runel, G.; Kiss, A.; Arias, L.; Vergier, B.; Das, P.; Cluet, D.; Boudaoud, A.; Grammont, M.

10.1101/440438 — developmental biology — Posted on 2018-10-10

2049 Cellular determinants of metabolite concentration ranges

Kueken, A.; Onana Eloundou-Mbebi, J. M.; Basler, G.; Nikoloski, Z.

10.1101/439232 — bioinformatics — Posted on 2018-10-10

2050 Vitamin D3 regulates estrogen’s action and affects mammary epithelial organization in 3D cultures

Hasan, N.; Sonnenschein, C.; Soto, A.

10.1101/439307 — developmental biology — Posted on 2018-10-10

2051 The microRNA, miR-18a, regulates NeuroD and photoreceptor differentiation in the retina of the zebrafish

Taylor, S. M.; Giuffre, E.; Moseley, P.; Hitchcock, P. F.

10.1101/440263 — developmental biology — Posted on 2018-10-10

2052 LinkedSV: Detection of mosaic structural variants from linked-read exome and genome sequencing data

Fang, L.; Kao, C.; Gonzalez, M. V.; Mafra, F. A.; Pellegrino da Silva, R.; Li, M.; Hakonarson, H.; Wang, K.

10.1101/409789 — bioinformatics — Posted on 2018-10-10

2053 Excitatory and inhibitory subnetworks are equally selective during decision-making and emerge simultaneously during learning

Najafi, F.; Elsayed, G. F.; Cao, R.; Pnevmatikakis, E.; Latham, P. E.; Cunningham, J.; Churchland, A. K.

10.1101/354340 — neuroscience — Posted on 2018-10-10

2054 PSMA Expression in the Hi-Myc Model; Extended Utility of a Representative Model of Prostate Adenocarcinoma for Biological Insight and as a Drug Discovery Tool

Simons, B. W.; Turtle, N. F.; Ulmert, D.; Abou, D.; Thorek, D. L.

10.1101/439596 — cancer biology — Posted on 2018-10-10

2055 Musical interaction is influenced by underlying predictive models and musical expertise

Heggli, O. A.; Konvalinka, I.; Kringelbach, M. L.; Vuust, P.

10.1101/440271 — neuroscience — Posted on 2018-10-10

2056 Cross-sectional and longitudinal brain scans reveal accelerated brain aging in multiple sclerosis

Hogestol, E. A.; Kaufmann, T.; Nygaard, G. O.; Beyer, M. K.; Sowa, P.; Nordvik, J. E.; Kolskaar, K.; Richard, G.; Andreassen, O. A.; Harbo, H. F.; Westlye, L. T.

10.1101/440412 — neuroscience — Posted on 2018-10-10

2057 Pupil responses to hidden photoreceptor-specific modulations in movies

Spitschan, M.; Gardasevic, M.; Martial, F.; Lucas, R.; Allen, A.

10.1101/440040 — neuroscience — Posted on 2018-10-10

2058 Local reciprocal release of GABA from dendritic spines of olfactory bulb granule cells requires local sodium channel activation and occurs on both fast and slow timescales

Lage-Rupprecht, V.; Ona Jodar, T.; Yeghiazaryan, G.; Rozsa, B.; Egger, V.

10.1101/440198 — neuroscience — Posted on 2018-10-10

2059 Molecular neuroanatomy of anorexia nervosa

Howard, D.; Negraes, P.; Voineskos, A. N.; Kaplan, A. S.; Muotri, A.; Duvvuri, V.; French, L.

10.1101/440313 — neuroscience — Posted on 2018-10-10

2060 Muller’s ratchet as a mechanism of frailty and multimorbidity

Govindaraju, D.; Innan, H.

10.1101/439877 — genetics — Posted on 2018-10-10

2061 PSMA Expression in the Hi-Myc Model; Extended Utility of a Representative Model of Prostate Cancer for Biological Insight and as a Drug Discovery Tool

Simons, B. W.; Turtle, N. F.; Ulmert, D.; Abou, D.; Thorek, D. L.

10.1101/439596 — cancer biology — Posted on 2018-10-10

2062 Demonstration of End-to-End Automation of DNA Data Storage

Takahashi, C. N.; Nguyen, B. H.; Strauss, K.; Ceze, L. H.

10.1101/439521 — synthetic biology — Posted on 2018-10-10

2063 Task activations produce spurious but systematic inflation of task functional connectivity estimates

Cole, M. W.; Ito, T.; Schultz, D.; Mill, R.; Chen, R.; Cocuzza, C.

10.1101/292045 — neuroscience — Posted on 2018-10-10

2064 Mapping the human brain’s cortical-subcortical functional network organization

Ji, J. L.; Spronk, M.; Kulkarni, K.; Repovs, G.; Anticevic, A.; Cole, M. W.

10.1101/206292 — neuroscience — Posted on 2018-10-10

2065 Alternative stable states in a model of microbial community limited by multiple essential nutrients

Dubinkina, V.; Fridman, Y.; Pandey, P.; Maslov, S.

10.1101/439547 — ecology — Posted on 2018-10-10

2066 A cellular anatomy of the normal adult human prostate and prostatic urethra

10.1101/439935 — cell biology — Posted on 2018-10-10

2067 β-cyclocitral is a conserved root growth regulator

Dickinson, A. J.; Lehner, K.; Mi, J.; Jia, K.-P.; Mijar, M.; Dinneny, J.; Al-Babili, S.; Benfey, P. N.

10.1101/337162 — plant biology — Posted on 2018-10-10

2068 Testing the unitary theory of language lateralisation using functional transcranial Doppler sonography study in adults

Woodhead, Z. V. J.; Bradshaw, A. R.; Wilson, A. C.; Thompson, P. A.; Bishop, D. V. M.

10.1101/437939 — neuroscience — Posted on 2018-10-10

2069 Lateral Asymmetry in Weekly Reproducibility of Resting State Amygdala Functional Connectivity

Tetereva, A.; Balaev, V.; Kartashov, S.; Ushakov, V.; Ivanitsky, A.; Martynova, O.

10.1101/439372 — neuroscience — Posted on 2018-10-10

2070 Diminished pre-stimulus alpha-lateralization suggests compromised self-initiated attentional control of auditory processing in old age

Dahl, M. J.; Ilg, L.; Li, S.-C.; Passow, S.; Werkle-Bergner, M.

10.1101/439919 — neuroscience — Posted on 2018-10-10

2071 Novel use of Diffusion Tensor Imaging to Delineate the Rat Basolateral Amygdala

Obenaus, A.; Kinney-Lang, E.; Jullienne, A.; Haddad, E.; Shereen, D.; Solodkin, A.; Dunn, J. F.; Baram, T. Z.

10.1101/439836 — neuroscience — Posted on 2018-10-10

2072 Altered orbitofrontal sulcogyral patterns in gambling disorder: a multicenter study

Li, Y.; Wang, Z.; Boileau, I.; Dreher, J.-C.; Gelskov, S.; Genauck, A.; Joutsa, J.; Kaasinen, V.; Perales, J.; Romanczuk-Seiferth, N.; Ruiz de Lara, C. M.; Siebner, H. R.; van Holst, R. J.; van Timmeren, T.; Sescousse, G.

10.1101/439034 — neuroscience — Posted on 2018-10-10

2073 Left planum temporale growth predicts language development in newborns with congenital heart disease

Jakab, A.; Meuwly, E.; Feldmann, M.; von Rhein, M.; Kottke, R.; Tuura, R.; Latal, B.; Knirsch, W.

10.1101/439711 — neuroscience — Posted on 2018-10-10

2074 Thalamic state influences timing and feature selectivity in the thalamocortical circuit

Whitmire, C. J.; Liew, Y. J.; Stanley, G. B.

10.1101/439778 — neuroscience — Posted on 2018-10-10

2075 Interactions of medial and lateral prefrontal cortex in hierarchical predictive coding

Alexander, W. H.; Womelsdorf, T.

10.1101/439927 — neuroscience — Posted on 2018-10-10

2076 Overlapping and unique neural circuits support perceptual decision making and confidence

Yeon, J.; Rahnev, D.

10.1101/439463 — neuroscience — Posted on 2018-10-10

2077 The interaction between ORF18 and ORF30 is required for late gene expression in Kaposi’s sarcoma-associated herpesvirus

Castaneda, A. F.; Glaunsinger, B. A.

10.1101/401976 — molecular biology — Posted on 2018-10-10

2078 A high resolution view of adaptive events

Mei, H.; Arbeithuber, B.; Cremona, M.; DeGeorgio, M.; Nekrutenko, A.

10.1101/429175 — evolutionary biology — Posted on 2018-10-10

2079 Towards reconstructing intelligible speech from the human auditory cortex

Akbari, H.; Khalighinejad, B.; Herrero, J.; Mehta, A.; Mesgarani, N.

10.1101/350124 — neuroscience — Posted on 2018-10-10

2080 Integrative analysis of Zika virus genome RNA structure reveals critical determinants of viral infectivity

Zhang, Q. C.; Li, P.; Wei, Y.; Mei, M.; Tang, L.; Sun, L.; Huang, W.; Zhou, J.; Zou, C.; Zhang, S.; Qin, C.; Jiang, T.; Dai, J.; Tan, X.

10.1101/412577 — pathology — Posted on 2018-10-10

2081 Healthy Ageing and Sentence Production: Disrupted Lexical Access in the Context of Intact Syntactic Planning

Hardy, S. M.; Segaert, K.; Wheeldon, L.

10.1101/327304 — neuroscience — Posted on 2018-10-10

2082 Evidence against preserved syntactic comprehension in healthy aging

Poulisse, C.; Wheeldon, L.; Segaert, K.

10.1101/299883 — neuroscience — Posted on 2018-10-10

2083 Miniaturization and optimization of 384-well compatible metagenomic sequencing library preparation

Mayday, M. Y.; Khan, L. M.; Chow, E. D.; Zinter, M. S.; DeRisi, J. L.

10.1101/440156 — molecular biology — Posted on 2018-10-10

2084 Cover crop mixture diversity, biomass productivity, weed suppression, and stability

Florence, A. M.; Higley, L. G.; Drijber, R. A.; Francis, C. A.; Lindquist, J. L.

10.1101/440180 — ecology — Posted on 2018-10-10

2085 The River Runs Through It: the Athabasca River Delivers Mercury to Aquatic Birds Breeding Far Downstream

Hebert, C.

10.1101/440115 — pharmacology and toxicology — Posted on 2018-10-10

2086 DNA methylation oscillation defines classes of enhancers

Libertini, E.; Hamoudi, R.; Heath, S.; Lancashire, L.; Garcia, A. R.; Grassi, L.; Downes, K.; Ouwehand, W.; Javierre, B.-M.; Cairns, J.; Wingett, S.; Paul, D.; Gut, M.; Gut, I.; Martens, J.; Ivliev, A.; Stunnenberg, H.; Frontini, M.; Spivakov, M.; Fraser, P.; Cutler, A.; Wallace, C.; Beck, S.

10.1101/262212 — genomics — Posted on 2018-10-10

2087 Allosteric effects in catalytic impaired variants of the enzyme cyclophilin A may be explained by changes in nano-microsecond time scale motions

Wapeesittipan, P.; Mey, A.; walkinshaw, m.; Michel, J.

10.1101/224329 — biophysics — Posted on 2018-10-10

2088 Loose social organisation of AB strain zebrafish groups in a two-patch environment

Seguret, A.; Collignon, B.; Cazenille, L.; Chemtob, Y.; Halloy, J.; Seguret, Collignon, Cazenille, Chemtob, Halloy,

10.1101/440149 — animal behavior and cognition — Posted on 2018-10-10

2089 In vitro characterization of human articular chondrocytes and chondroprogenitors derived from normal and osteoarthritic knee joints

Vinod, E.; Kachroo, U.; Sathishkumar, S.; Boopalan, P. R. J. V. C.

10.1101/440107 — cell biology — Posted on 2018-10-10

2090 An efficient timer and sizer of protein motions reveals the time scales of functional dynamics in structured biomacromolecules

Chan, J.; Lin, H.-R.; Takemura, K.; Chang, K.-C.; Chang, Y.-Y.; Joti, Y.; Kitao, A.; Yang, L.-W.

10.1101/384511 — biophysics — Posted on 2018-10-10

2091 A comprehensive model of DNA fragmentation for the preservation of High Molecular Weight DNA

Klingstrom, T.; Bongcam-Rudloff, E.; Vinnere Pettersson, O.

10.1101/254276 — molecular biology — Posted on 2018-10-10

2092 Non-linear changes in modelled terrestrial ecosystems subjected to perturbations

Newbold, T.; Tittensor, D. P.; Harfoot, M. B. J.; Scharlemann, J. P. W.; Purves, D. W.

10.1101/439059 — ecology — Posted on 2018-10-10

2093 Interactions between N-terminal modules in MPS1 enable spindle checkpoint silencing

Pachis, S. T.; Hiruma, Y.; Perrakis, A.; Kops, G. J.

10.1101/438903 — cell biology — Posted on 2018-10-10

2094 MTHFD1 is a genetic interactor of BRD4 and links folate metabolism to transcriptional regulation

Sdelci, S.; Rendeiro, A.; Rathert, P.; Hofstaetter, G.; Ringler, A.; Moll, H. P.; You, W.; Klavins, K.; Guertl, B.; Farlik, M.; Schick, S.; Klepsch, F.; Oldach, M.; Buphamalai, P.; Schischlik, F.; Majek, P.; Parapatics, K.; Schmidl, C.; Schuster, M.; Penz, T.; Buckley, D. L.; Hudecz, O.; Imre, R.; Kralovics, R.; Bennett, K. L.; Mueller, A. C.; Mechtler, K.; Menche, J.; Bradner, J. E.; Winter, G. E.; Casanova, E.; Bock, C.; Zuber, J.; Kubicek, S.

10.1101/439422 — cancer biology — Posted on 2018-10-10

2095 Association of the types of alcoholic beverages and blood lipids in a local population in Jharkhand, India

Verma, S. K.; Rout, J.; Biswas, S.; Tripathy, U.

10.1101/439042 — biochemistry — Posted on 2018-10-10

2096 Individual variability in behavior and functional networks predicts vulnerability using a predator scent model of PTSD

Perez, P. D.; Dopfel, D.; Bravo-Rivera, H.; Quirk, G. J.; Zhang, N.

10.1101/438952 — neuroscience — Posted on 2018-10-10

2097 Impaired development of neocortical circuits contributes to the neurological alterations in DYRK1A haploinsufficiency syndrome

Arranz, J.; Balducci, E.; Arato, K.; Sanchez-Elexpuru, G.; Najas, S.; Parras, A.; Rebollo, E.; Pijuan, I.; Erb, I.; Verde, G.; Sahun, I.; Barallobre, M. J.; Lucas, J. J.; Sanchez, M. P.; de la Luna, S.; Arbones, M. L.

10.1101/438861 — neuroscience — Posted on 2018-10-10

2098 Modular modeling improves the predictions of genetic variant effects on splicing

Cheng, J.; Nguyen, T. Y. D.; Cygan, K. J.; Celik, M. H.; Fairbrother, W.; Avsec, Z.; Gagneur, J.

10.1101/438986 — genomics — Posted on 2018-10-10

2099 A family of transcription factors that limit lifespan: ETS factors have conserved roles in longevity

Dobson, A.; Boulton-McDonald, R.; Houchou, L.; Ren, Z.; Hoti, M.; Rodriguez-Lopez, M.; Gkantiragas, A.; Gregoriou, A.; Baehler, J.; Ezcurra, M.; Alic, N.

10.1101/438879 — genetics — Posted on 2018-10-10

2100 Multi-dimensional spectral gap optimization of order parameters (SGOOP) through conditional probability factorization

Smith, Z.; Pramanik, D.; Tsai, S.-T.; Tiwary, P.

10.1101/438549 — biophysics — Posted on 2018-10-10

2101 DIAlign provides precise retention time alignment across distant runs in DIA and targeted proteomics

Gupta, S.; Ahadi, S.; Zhou, W.; Rost, H. L.

10.1101/438309 — bioinformatics — Posted on 2018-10-10

2102 Selene: a PyTorch-based deep learning library for sequence-level data

Chen, K. M.; Cofer, E. M.; Zhou, J.; Troyanskaya, O. G.

10.1101/438291 — bioinformatics — Posted on 2018-10-10

2103 C/VDdb: a multi-omics expression profiling database for a knowledge-driven approach in cardiovascular disease (CVD)

Fernandes, M.; Patel, A.; Husi, H.

10.1101/430660 — systems biology — Posted on 2018-10-10

2104 Chronic, Low-Level Oral Exposure to Marine Toxin, Domoic Acid, Alters Whole Brain Morphometry in Nonhuman Primates

Petroff, R.; Richards, T.; Crouthamel, B.; McKain, N.; Stanley, C.; Grant, K. S.; Burbacher, T. M.

10.1101/439109 — pharmacology and toxicology — Posted on 2018-10-10

2105 Whole genome sequencing enables definitive diagnosis of Cystic Fibrosis and Primary Ciliary Dyskinesia

Ellingford, J. M.; Beaman, G.; Webb, K.; O'Callaghan, C.; Hirst, R. A.; The 100,000 Genomes Project, ; Black, G. C.; Newman, W. G.

10.1101/438838 — genomics — Posted on 2018-10-10

2106 Genomic knockout of alms1 in zebrafish recapitulates Alstrom syndrome and provides insight into metabolic phenotypes

Nesmith, J. E.; Hostelley, T. L.; Leitch, C. C.; Matern, M. S.; Sethna, S.; McFarland, R.; Lodh, S.; Westlake, C. J.; Hertzano, R.; Ahmed, Z. M.; Zaghloul, N. A.

10.1101/439067 — genetics — Posted on 2018-10-10

2107 Single cell variations in expression of codominant alleles A and B on RBC of AB blood group individuals

Jesudasan, R. A.; Bajpai, A.; Sridevi, B.; Jonnalagadda, V.; Muthukotti, P.

10.1101/439083 — genetics — Posted on 2018-10-10

2108 Anemia Diagnosis on a Simple Paper-based Assay

Biswas, S.; Bandyopadhyay, S.; Kar, S.; Som, N. K.; Chakraborty, S.

10.1101/439224 — bioengineering — Posted on 2018-10-10

2109 Chronic ethanol ingestion impairs Drosophila melanogaster health in a microbiome-dependent manner

Chandler, J. A.; Innocent, L. V.; Huang, I. L.; Yang, J. L.; Eisen, M. B.; Ludington, W. B.

10.1101/217240 — microbiology — Posted on 2018-10-09

2110 NHX-type Na+(K+)/H+ antiporter activity is required for endomembrane trafficking and ion homeostasis in Arabidopsis thaliana

Dragwidge, J. M.; Scholl, S.; Schumacher, K.; Gendall, A. R.

10.1101/382663 — plant biology — Posted on 2018-10-09

2111 Reorganization in cerebral and cerebellar cortices is not restricted by proximity between body-part representations

Hahamy, A.; Makin, T.

10.1101/439356 — neuroscience — Posted on 2018-10-09

2112 To Overwrite or to Recall? Individual Differences in Motor Adaptation

Oh, Y.; Schweighofer, N.

10.1101/439406 — neuroscience — Posted on 2018-10-09

2113 Isolating syntax in natural language: MEG evidence for an early contribution of left posterior temporal cortex

Flick, G.; Pylkkänen, L.

10.1101/439158 — neuroscience — Posted on 2018-10-09

2114 Histologically derived fiber response functions for diffusion MRI vary across white matter fibers - an ex vivo validation study in the squirrel monkey brain

Schilling, K. G.; Gao, Y.; Stepniewska, I.; Janve, V.; Landman, B. A.; Anderson, A. W.

10.1101/438978 — neuroscience — Posted on 2018-10-09

2115 Selective D2 and D3 receptor antagonists oppositely modulate cocaine responses in mice via distinct postsynaptic mechanisms in nucleus accumbens

Manvich, D. F.; Petko, A. K.; Branco, R. C.; Foster, S. L.; Porter-Stransky, K. A.; Stout, K. A.; Newman, A. H.; Miller, G. W.; Paladini, C. A.; Weinshenker, D.

10.1101/439398 — neuroscience — Posted on 2018-10-09

2116 Central sensitization increases the pupil dilation elicited by mechanical pinprick stimulation

van den Broeke, E. N.; Hartgerink, M. D.; Butler, J.; Lambert, J.; Mouraux, A.

10.1101/438788 — neuroscience — Posted on 2018-10-09

2117 Ancient ancestry informative markers for identifying fine-scale ancient population structure in Eurasians

Esposito, U.; Das, R.; Pirooznia, M.; Elhaik, E.

10.1101/333690 — genetics — Posted on 2018-10-09

2118 The antioxidant drug Nacetylcysteine abolishes SOS mediated mutagenesis produced by fluoroquinolones in bacteria

Rodriguez- Rosado, A.; Valencia, E. Y.; Rodriguez- Rojas, A.; Costas- Romero, C.; Galhardo, R. S.; Blazquez Gomez, J.; Rodriguez- Beltran, J.

10.1101/428961 — microbiology — Posted on 2018-10-09

2119 Superresolved and reference-free microparticle traction force microscopy (MP-TFM) reveals the complexity of the mechanical interaction in phagocytosis

Vorselen, D.; Wang, Y.; Footer, M. J.; Cai, W.; Theriot, J. A.

10.1101/431221 — biophysics — Posted on 2018-10-09

2120 Sensory prediction errors, not performance errors, update memories in visuomotor adaptation

Lee, K.; Oh, Y.; Izawa, J.; Schweighofer, N.

10.1101/313551 — neuroscience — Posted on 2018-10-09

2121 Cell type-specific differences in protein complex stoichiometry and transcriptional regulation affect the timing of stem cell division

Clark, N. M.; Fisher, A. P.; Berckmans, B.; Zebell, S. G.; Simon, R.; Gallagher, K.; Sozzani, R.

10.1101/439331 — plant biology — Posted on 2018-10-09

2122 The unique nested gene ALZAS as a potential source of Aβ-peptides in Alzheimer’s disease

Gano, C.; Reichmann, H.; Janetzky, B.

10.1101/438630 — neuroscience — Posted on 2018-10-09

2123 ALS mice carrying pathological mutant TDP-43, but not mutant FUS, display axonal transport defects in vivo

Sleigh, J. N.; Tosolini, A. P.; Gordon, D.; Devoy, A.; Fratta, P.; Fisher, E. M.; Talbot, K.; Schiavo, G.

10.1101/438812 — neuroscience — Posted on 2018-10-09

2124 Accurate characterization of expanded tandem repeat length and sequence through whole genome long-read sequencing on PromethION.

De Roeck, A.; De Coster, W.; Bossaerts, L.; Cacace, R.; De Pooter, T.; Van Dongen, J.; D'Hert, S.; De Rijk, P.; Strazisar, M.; Van Broeckhoven, C.; Sleegers, K.

10.1101/439026 — genomics — Posted on 2018-10-09

2125 Genome-wide meta-analysis of depression in 807,553 individuals identifies 102 independent variants with replication in a further 1,507,153 individuals

Howard, D. M.; Adams, M. J.; Clarke, T.-K.; Hafferty, J. D.; Gibson, J.; Shirali, M.; Coleman, J. R. I.; Ward, J.; Wigmore, E. M.; Alloza, C.; Shen, X.; Barbu, M. C.; Xu, E. Y.; Whalley, H. C.; Marioni, R. E.; Porteous, D. J.; Davies, G.; Deary, I. J.; Hemani, G.; Tian, C.; Hinds, D. A.; 23andMe Research Team, ; Major Depressive Disorder Working Group of the Psychiatric Genomics Consortium, ; Trzaskowski, M.; Byrne, E. M.; Ripke, S.; Smith, D. J.; Sullivan, P. F.; Wray, N. R.; Breen, G.; Lewis, C. M.; McIntosh, A. M.

10.1101/433367 — genetics — Posted on 2018-10-09

2126 Suppressor of Fused controls the proliferation of postnatal neural stem and precursor cells via a Gli3-dependent mechanism

Gomez, H. G.; Castillo, J. G.; Noguchi, H.; Aguilar, D.; Pleasure, S. J.; Yabut, O. R.

10.1101/438705 — developmental biology — Posted on 2018-10-09

2127 Light-evoked activity and BDNF regulate mitochondrial dynamics and mitochondrial localized translation

Goldberg, J. L.; Kreymerman, A.; Weinstein, J. E.; Shah, S. H.; Buickians, D. N.; Faust, A.; Merwe, Y. V. D.; Nahmou, M. M.; Cho, I.-J.; Huynh, S. K.; Verma, S.; Xin, X.-L.; Steketee, M. B.

10.1101/438739 — cell biology — Posted on 2018-10-09

2128 The Novel Mnk1/2 Degrader VNLG-152 Potently Inhibits TNBC Tumor Growth and Metastasis

Njar, V. C. O.; Ramalingam, S.; Ramamurthy, V.; Gediya, L. K.; Murigi, F. N.; Purushottamachar, P.; Huang, W.; Kane, M. A.; Choi, E. Y.; Lapidus, R. G.; Vasaitis, T. S.; Zhang, Y.

10.1101/439208 — cancer biology — Posted on 2018-10-09

2129 Cellular and Synaptic Phenotype Compensations Limit Circuit Disruption in Fmr1-KO Mouse Layer 4 Barrel Cortex but Fail to Prevent Deficits in Information Processing

Domanski, A. P.; Booker, S.; Wyllie, D.; Isaac, J.; Kind, P.

10.1101/403725 — neuroscience — Posted on 2018-10-09

2130 The landscape of T cell epitope immunogenicity in sequence space

Ogishi, M.; Yotsuyanagi, H.

10.1101/155317 — immunology — Posted on 2018-10-09

2131 A symmetric toggle switch explains the onset of random X inactivation in different mammals

Mutzel, V.; Okamoto, I.; Dunkel, I.; Saitou, M.; Giorgetti, L.; Heard, E.; Schulz, E. G.

10.1101/204909 — systems biology — Posted on 2018-10-09

2132 Genetic mapping with allele dosage information in tetraploid Urochloa decumbens (Stapf) R.D. Webster reveals insights into spittlebug (Notozulia entreriana Berg) resistance

Ferreira, R. C. U.; Lara, L. A. d. C.; Chari, L.; Barrios, S. C. L.; do Valle, C. B.; Valerio, J. R.; Torres, F. Z. V.; Garcia, A. A. F.; de Souza, A. P.

10.1101/360594 — plant biology — Posted on 2018-10-09

2133 Quantitative Mapping of Free-Standing Lipid Membranes on Nano-Porous Mica Substrates

Costa, L.; Carretero-Genevrier, A.; Ferrain, E.; Milhiet, P.-E.; Picas, L.

10.1101/407254 — biophysics — Posted on 2018-10-09

2134 Population Genetics Based Phylogenetics Under Stabilizing Selection for an Optimal Amino Acid Sequence: A Nested Modeling Approach

Beaulieu, J.; O'Meara, B.; Zaretzki, R.; Landerer, C.; Chai, J.; Gilchrist, M. A.

10.1101/120238 — evolutionary biology — Posted on 2018-10-09

2135 Ancient tropical extinctions contributed to the latitudinal diversity gradient

Meseguer, A. S.; Condamine, F. L.

10.1101/236646 — evolutionary biology — Posted on 2018-10-09

2136 On Model Averaging Partial Regression Coefficients

Walker, J. A.

10.1101/133785 — ecology — Posted on 2018-10-09

2137 PathwayMatcher: multi-omics pathway mapping and proteoform network generation

Hernandez Sanchez, L. F.; Burger, B.; Horro, C.; Fabregat, A.; Johansson, S.; Njolstad, P. R.; Barsnes, H.; Hermjakob, H.; Vaudel, M.

10.1101/375097 — bioinformatics — Posted on 2018-10-09

2138 Novel Comparison of Evaluation Metrics for Gene Ontology Classifiers Reveals Drastic Performance Differences

Plyusnin, I.; Holm, L.; Törönen, P.

10.1101/427096 — bioinformatics — Posted on 2018-10-09

2139 Altered chromatin localization of hybrid lethality proteins in Drosophila

Cooper, J. C.; Lukacs, A.; Reich, S.; Schauer, T.; Imhof, A.; Phadnis, N.

10.1101/438432 — molecular biology — Posted on 2018-10-09

2140 Genome-wide disruption of DNA methylation by 5-aza-2’-deoxycytidine in the parasitoid wasp Nasonia vitripennis

Cook, N.; Parker, D. J.; Turner, F.; Tauber, E.; Pannebakker, B. A.; Shuker, D. M.

10.1101/437202 — evolutionary biology — Posted on 2018-10-09

2141 Managing the Spatial Covariance of Genetic Diversity in Niemann-Pick C1 Through Modulation of the Hsp70 Chaperone System

Wang, C.; Scott, S. M.; Hutt, D. M.; Zhao, P.; Shao, H.; Gestwicki, J. E.; Balch, W. E.

10.1101/437764 — genomics — Posted on 2018-10-09

2142 TAG.ME: Taxonomic Assignment of Genetic Markers for Ecology

Pires, D. E. V.; Oliveira, F. S.; Correa, F. B.; Morais, D. K.; Fernandes, G. R.

10.1101/263293 — bioinformatics — Posted on 2018-10-09

2143 gwasurvivr: an R package for genome wide survival analysis

Rizvi, A. A.; Karaesmen, E.; Morgan, M.; Preus, L.; Wang, J.; Hahn, T.; Sovic, M.; Sucheston-Campbell, L.

10.1101/326033 — genomics — Posted on 2018-10-09

2144 Cortical suppressive waves shape the representation of long-range apparent motion

Chemla, S.; Reynaud, A.; diVolo, M.; Zerlaut, Y.; Perrinet, L.; Destexhe, A.; Chavane, F.

10.1101/372763 — neuroscience — Posted on 2018-10-09

2145 Learning cellular morphology with neural networks

Schubert, P.; Dorkenwald, S.; Januszewski, M.; Jain, V.; Kornfeld, J.

10.1101/364034 — neuroscience — Posted on 2018-10-09

2146 Efficient implementation of penalized regression for genetic risk prediction

Prive, F.; Aschard, H.; Blum, M. G. B.

10.1101/403337 — genetics — Posted on 2018-10-09

2147 Genome-wide analyses supported by RNA-Seq reveal non-canonical splice sites in plant genomes

Pucker, B.; Brockington, S. F.

10.1101/428318 — genomics — Posted on 2018-10-09

2148 Comparative activity of Ceftriaxone, Ciprofloxacin and Gentamicin as a function of bacterial growth rate probed by Escherichia coli chromosome replication in the mouse peritonitis model

Haugan, M. S.; Lobner-Olesen, A.; Frimodt-Moller, N.

10.1101/438663 — microbiology — Posted on 2018-10-09

2149 Antiviral adaptive immunity and tolerance in the mosquito Aedes aegyti

Andino, R.; Tassetto, M.; Kunitomi, M.; Whitfield, Z. J.; Dolan, P. T.; Sanchez-Vargas, I.; Ribiero, I.; Chen, T.; Olson, K. E.

10.1101/438911 — immunology — Posted on 2018-10-09

2150 The neonatal Fc receptor is a pan-echovirus receptor

Morosky, S.; Evans, A.; Lemon, K.; Schmus, S.; Bakkenist, C.; Coyne, C.

10.1101/438358 — microbiology — Posted on 2018-10-09

2151 Sequence Imputation from Low Density Single Nucleotide Polymorphism Panel in a Black Poplar Breeding population

Pegard, M.; Rogier, O.; Berard, A.; Faivre-Rampant, P.; Le Paslier, M.-C.; Bastien, C.; Jorge, V.; Sanchez, L.

10.1101/437426 — genomics — Posted on 2018-10-09

2152 Patient-derived phosphoribosyl pyrophosphate synthetase mutations in Drosophila result in autophagy and lysosome dysfunction

Delos Santos, K. A.; Yergeau, C.; Moon, N. S.

10.1101/438747 — genetics — Posted on 2018-10-09

2153 Building gene regulatory networks from single-cell ATAC-seq and RNA-seq using Linked Self-Organizing Maps

Jansen, C.; Ramirez, R.; El-Ali, N.; Gomez-Cabrero, D.; Tegner, J.; Merkenschlager, M.; Conesa, A.; Mortazavi, A.

10.1101/438937 — genomics — Posted on 2018-10-09

2154 Effect of Dietary Fat on the Metabolism of Energy and Nitrogen, Serum Parameters, Rumen Fermentation, and Microbiota in twin Hu Male Lambs

Diao, Q.; li, w.; Tao, H.; zhang, n.; ma, t.; deng, k.; xie, b.; jia, p.

10.1101/438929 — microbiology — Posted on 2018-10-09

2155 Ceftolozane-tazobactam pharmacokinetics during extracorporeal membrane oxygenation in a lung transplant recipient

Arena, F.; Marchetti, L.; Henrici De Angelis, L.; Maglioni, E.; Contorni, M.; Cassetta, M. I.; Novelli, A.; Rossolini, G.

10.1101/438671 — pharmacology and toxicology — Posted on 2018-10-09

2156 D-GPM: a deep learning method for gene promoter methylation inference

Pan, X.; Liu, B.; Wen, X.; Liu, Y.; Zhang, X.; Li, S.

10.1101/438218 — bioinformatics — Posted on 2018-10-09

2157 Quantitative Analysis of a Transient Dynamics of a Gene Regulatory Network

Lee, J.; Lee, J.

10.1101/438606 — biophysics — Posted on 2018-10-09

2158 Using QC-Blind for quality control and contamination screening of bacteria DNA sequencing data without reference genome

Ning, K.; Xi, W.; Gao, Y.; Cheng, Z.; Chen, C.; Han, M.

10.1101/438655 — bioinformatics — Posted on 2018-10-09

2159 Chromosome missegregation causes somatic polyploidization in plants

Kozgunova, E.; Nishina, M.; Goshima, G.

10.1101/438648 — cell biology — Posted on 2018-10-09

2160 A highly predictive signature of cognition and brain atrophy for progression to Alzheimer’s dementia

Tam, A.; Dansereau, C.; Iturria-Medina, Y.; Urchs, S.; Orban, P.; Sharmarke, H.; Breitner, J.; Bellec, P.; Alzheimer's Disease Neuroimaging Initiative,

10.1101/352344 — neuroscience — Posted on 2018-10-09

2161 Unique composition and hyperstability of the ventral disc, Giardias complex microtubule organelle

Nosala, C.; Hagen, K. D.; Jones, K.; Loudermilk, R.; Nguyen, K.; Dawson, S. C.

10.1101/361105 — microbiology — Posted on 2018-10-09

2162 Unsupervized Quantification of Demographic Structure for Single-copy Alignments

Rohrlach, A. B.; Bean, N.; Glonek, G.; Holland, B.; Tobler, R.; Tuke, J.; Cooper, A.

10.1101/338442 — bioinformatics — Posted on 2018-10-09

2163 The ataxin-1 interactome reveals direct connection with multiple disrupted nuclear transport pathways

Zhang, S.; Williamson, N. A.; Jans, D. A.; Bogoyevitch, M. A.

10.1101/438523 — biochemistry — Posted on 2018-10-08

2164 Causal evidence for LTP-based interference in visual learning

Bang, J. W.; Milton, D.; Sasaki, Y.; Watanabe, T.; Rahnev, D.

10.1101/438598 — neuroscience — Posted on 2018-10-08

2165 Deep brain stimulation of the nucleus accumbens shell does not decrease cocaine self-administration in cocaine-dependent rats but increases GluR1/GluA1 in the central nucleus of the amygdala

Kononoff, J.; Melas, P. A.; Qvist, J. S.; de Guglielmo, G.; Kallupi, M.; Kandel, E. R.; George, O.

10.1101/438507 — neuroscience — Posted on 2018-10-08

2166 Altered chromatin localization of hybrid lethality proteins in Drosophila

Cooper, J. C.; Lukacs, A.; Reich, S.; Schauer, T.; Imhof, A.; Phadnis, N.

10.1101/438432 — molecular biology — Posted on 2018-10-08

2167 TET enzymes augment AID expression via 5hmC modifications at the Aicda superenhancer

Lio, C.-W. J.; Shukla, V.; Samaniego-Castruita, D.; Gonzalez-Avalos, E.; Chakraborty, A.; Yue, X.; Schatz, D. G.; Ay, F.; Rao, A.

10.1101/438531 — immunology — Posted on 2018-10-08

2168 scRNA-seq mixology: towards better benchmarking of single cell RNA-seq protocols and analysis methods

Tian, L.; Dong, X.; Freytag, S.; Le Cao, K.-A.; Su, S.; Amann-Zalcenstein, D.; Weber, T. S.; Seidi, A.; Naik, S.; Ritchie, M. E.

10.1101/433102 — bioinformatics — Posted on 2018-10-08

2169 Association of mitochondria with microtubules inhibits mitochondrial fission by precluding Dnm1 assembly

Mehta, K.; Chacko, L. A.; Chug, M. K.; Jhunjhunwala, S.; Ananthanarayanan, V.

10.1101/178913 — cell biology — Posted on 2018-10-08

2170 Stereotyped Terminal Axon Branching of Leg Motor Neurons Mediated by IgSF Proteins DIP-α and Dpr10

Venkatasubramanian, L.; Guo, Z.; Xu, S.; Tan, L.; Xiao, Q.; Nagarkar-Jaiswal, S.; Mann, R. S.

10.1101/438267 — neuroscience — Posted on 2018-10-08

2171 Highly mutated memory cells drive an inefficient secondary antibody response to a variant protein

Tennant, R. K.; Holzer, B.; Love, J.; Tchilian, E.; White, H. N.

10.1101/438184 — immunology — Posted on 2018-10-08

2172 Analyses of Neanderthal introgression suggest that Levantine and southern Arabian populations have a shared population history

Vyas, D. N.; Mulligan, C. J.

10.1101/438390 — genomics — Posted on 2018-10-08

2173 Exploring integument transcriptomes, cuticle ultrastructure, and cuticular hydrocarbons profiles in eusocial and solitary bee species displaying heterochronic adult cuticle maturation

Falcon, T.; Pinheiro, D. G.; Ferreira-Caliman, M. J.; Turatti, I. C. C.; Abreu, F. C. P.; Galaschi-Teixeira, J. S.; Martins, J. R.; Elias-Neto, M.; Soares, M. P. M.; Laure, M. B.; Figueiredo, V. L. C.; Lopes, N. P.; Simoes, Z. L. P.; Garofalo, C. A.; Bitondi, M. M. G.

10.1101/437962 — genetics — Posted on 2018-10-08

2174 Crystal Toxins and the volunteer’s dilemma in bacteria

Patel, M.; Raymond, B.; Bonsall, M. B.; West, S. A.

10.1101/437913 — evolutionary biology — Posted on 2018-10-08

2175 OrgaQuant: Intestinal Organoid Localization and Quantification Using Deep Convolutional Neural Networks

Kassis, T.; Hernandez-Gordillo, V.; Langer, R.; Griffith, L. G.

10.1101/438473 — bioengineering — Posted on 2018-10-08

2176 Transcriptomic metaanalyses of autistic brains reveals shared gene expression and biological pathway abnormalities with cancer.

Fores Martos, J.; Catala Lopez, F.; Sanchez Valle, J.; Ibanez Garikano, K.; Tejero, H.; Palma Gaudiel, H.; Climent Bataller, J.; Pancaldi, V.; Fananas Saura, L.; Arango Lopez, C.; Parellada, M.; Baudot, A.; Vogt, D.; Rubenstein, J.; Valencia, A.; Tabares Seisdedos, R.

10.1101/437905 — systems biology — Posted on 2018-10-08

2177 Heterotrimeric G-proteins in unfolded protein response mediate plant growth-defense tradeoffs upstream of steroid and immune signaling

Miller, J. C.; Lawrence, S. A.; Ceserani, T.; Beakes, C. L.; Clay, N. K.

10.1101/438135 — plant biology — Posted on 2018-10-08

2178 Genome-wide transcription during early wheat meiosis is independent of synapsis, ploidy level and the Ph1 locus

Martin, A. C.; Borrill, P.; Higgins, J.; Alabdullah, A. K.; Ramirez-Gonzalez, R.; Swarbreck, D.; Uauy, C.; Shaw, P.; Moore, G.

10.1101/437921 — genomics — Posted on 2018-10-08

2179 Disease mortality in domesticated animals is predicted by host evolutionary relationships

Farrell, M. J.; Davies, J.

10.1101/438226 — evolutionary biology — Posted on 2018-10-08

2180 Topological Scoring of Protein Interaction Networks

Sardiu, M.; Gilmore, J.; Groppe, B.; Dutta, A.; Florens, L.; Washburn, M.

10.1101/438408 — systems biology — Posted on 2018-10-08

2181 The dynamic proteome of influenza A virus infection identifies M segment splicing as a host range determinant

Bogdanow, B.; Eichelbaum, K.; Sadewasser, A.; Wang, X.; Husic, I.; Paki, K.; Hergeselle, M.; Vetter, B.; Hou, J.; Chen, W.; Wiebusch, L.; Meyer, I. M.; Wolff, T.; Selbach, M.

10.1101/438176 — systems biology — Posted on 2018-10-08

2182 SmbHLH37 functions antagonistically with SmMYC2 in regulating jasmonate-mediated biosynthesis of phenolic acids in Salvia miltiorrhiza

Du, T.; Niu, J.; Su, J.; Li, S.; Guo, X.; Li, L.; Cao, X.; Kang, J.

10.1101/438143 — plant biology — Posted on 2018-10-08

2183 Revealing the nanoscale morphology of the primary cilium using super-resolution fluorescence microscopy

Yoon, J.; Comerci, C. J.; Weiss, L. E.; Milenkovic, L.; Stearns, T.; Moerner, W. E.

10.1101/437640 — biophysics — Posted on 2018-10-08

2184 An In-Silico Mammalian Whole-Cell Model Reveals the Influence of Spatial Organization on RNA Splicing Efficiency

Ghaemi, Z.; Peterson, J.; Gruebele, M.; Luthey-Schulten, Z.

10.1101/435628 — biophysics — Posted on 2018-10-08

2185 MetaCell: analysis of single cell RNA-seq data using k-NN graph partitions

Baran, Y.; Sebe-Pedros, A.; Lubling, Y.; Giladi, A.; Chomsky, E.; Meir, Z.; Hoichman, M.; Lifshitz, A.; Tanay, A.

10.1101/437665 — bioinformatics — Posted on 2018-10-08

2186 Kinetic models of metabolism that consider alternative steady-state solutions of intracellular fluxes and concentrations

Hameri, T.; Fengos, G.; Ataman, M.; Miskovic, L.; Hatzimanikatis, V.

10.1101/437822 — systems biology — Posted on 2018-10-08

2187 In vitro membrane remodelling by ESCRT-II/ESCRT-III is regulated by negative feedback from membrane tension

Booth, A.; Marklew, C. J.; Ciani, B.; Beales, P. A.

10.1101/438481 — synthetic biology — Posted on 2018-10-08

2188 Automated lesion segmentation with BIANCA: impact of population-level features, classification algorithm and locally adaptive thresholding

Sundaresan, V.; Zamboni, G.; Le Heron, C.; M. Rothwell, P.; Husain, M.; Battaglini, M.; De Stefano, N.; Jenkinson, M.; Griffanti, L.

10.1101/437608 — neuroscience — Posted on 2018-10-08

2189 Genetic variability in response to Aβ deposition influences Alzheimer’s risk

Salih, D. A.; Bayram, S.; Guelfi, M. S.; Reynolds, R. H.; Shoai, M.; Ryten, M.; Brenton, J.; Zhang, D.; Matarin, M.; Botia, J.; Shah, R.; Brookes, K.; Guetta-Baranes, T.; Morgan, K.; Bellou, E.; Cummings, D. M.; Hardy, J.; Edwards, F. A.; Escott-Price, V.

10.1101/437657 — neuroscience — Posted on 2018-10-08

2190 Psychological resilience correlates with EEG source-space brain network flexibility

Paban, V.; Modolo, J.; Mheich, A.; Hassan, M.

10.1101/437848 — neuroscience — Posted on 2018-10-08

2191 Altered chromatin localization of hybrid lethality proteins in Drosophila

Cooper, J. C.; Lukacs, A.; Reich, S.; Schauer, T.; Imhof, A.; Phadnis, N.

10.1101/438432 — molecular biology — Posted on 2018-10-08

2192 Functional determinants of a small protein repressor controlling a broadly conserved bacterial sensor kinase

Yadavalli, S. S.; Goh, T.; Carey, J. N.; Goulian, M.

10.1101/438515 — microbiology — Posted on 2018-10-08

2193 Flavor compounds in fermented Chinese alcoholic beverage alter gut microbiota and attenuate ethanol-induced liver

Fang, C.; Du, H.; Zheng, X.; Zhao, A.; Jia, W.; Xu, Y.

10.1101/437731 — microbiology — Posted on 2018-10-08

2194 Developmental tuning of mineralization drives morphological diversity of gill cover bones in sculpins and their relatives

Cytrynbaum, E. G.; Small, C. M.; Kwon, R. Y.; Hung, B.; Kent, D.; Yan, Y.-l.; Knope, M. L.; Bremiller, R. A.; Desvignes, T.; Kimmel, C. B.

10.1101/437749 — evolutionary biology — Posted on 2018-10-08

2195 Cerebral blood flow measured with diffusing wave spectroscopy during anesthesia

Belau, M.; Scheffer, W.; Maret, G.

10.1101/438028 — biophysics — Posted on 2018-10-08

2196 Using the drug-protein interactome to identify anti-ageing compounds for humans

Fuentealba Valenzuela, M.; Donertas, H. M.; Williams, R.; Labbadia, J.; Thornton, J.; Partridge, L.

10.1101/438234 — bioinformatics — Posted on 2018-10-08

2197 Aggression and discrimination among closely versus distantly related species of Drosophila

Gupta, T.; Howe, S. E.; Zorman, M. L.; Lockwood, B. L.

10.1101/438374 — animal behavior and cognition — Posted on 2018-10-08

2198 RegKnock: identifying gene knockout strategies for microbial strain optimization based on regulatory and metabolic integrated network

Xu, Z.

10.1101/438168 — synthetic biology — Posted on 2018-10-08

2199 Initiation of droxidopa during hospital admission for management of refractory neurogenic orthostatic hypotension in severely ill patients

McDonell, K. E.; Preheim, B. A.; Diedrich, A.; Muldowney, J. A. S.; Peltier, A. C.; Robertson, D.; Biaggioni, I.; Shibao, C. A.

10.1101/437319 — pharmacology and toxicology — Posted on 2018-10-08

2200 Aquaporin-4 facilitator TGN-073 demonstrates novel analgesic activity

Huber, V. J.; Kwee, I. L.; Nakada, T.

10.1101/403311 — pharmacology and toxicology — Posted on 2018-10-08

2201 Type I Interferon regulates IgE-mediated enhancement of rhinovirus-induced Th2 priming by primary human monocytes

Rowe, R. K.; Pyle, D. M.; Farrar, J. D.; Gill, M. A.

10.1101/432815 — immunology — Posted on 2018-10-08

2202 Genetic And Epigenetic Fine Mapping Of Complex Trait Associated Loci In The Human Liver

Caliskan, M.; Manduchi, E.; Rao, H. S.; Segert, J. A.; Holsbach Beltrame, M.; Trizzino, M.; Park, Y.; Baker, S. W.; Chesi, A.; Johnson, M. E.; Hodge, K. M.; Leonard, M. E.; Loza, B.; Xin, D.; Berrido, A. M.; Hand, N. J.; Bauer, R. C.; Wells, A. D.; Olthoff, K. M.; Shaked, A.; Rader, D. J.; Grant, S. F.; Brown, C. D.

10.1101/432823 — genetics — Posted on 2018-10-08

2203 Network-aware mutation clustering of cancer

Pattnaik, S.; Vacher, C.; Lee, H. C.; Kaplan, W.; Thomas, D. M.; Wu, J.; Pinese, M.

10.1101/432872 — bioinformatics — Posted on 2018-10-08

2204 Individual differences in dopamine are associated with reward discounting in clinical groups but not in healthy adults

Castrellon, J. J.; Seaman, K. L.; Crawford, J. L.; Young, J. S.; Smith, C. T.; Dang, L. C.; Hsu, M.; Cowan, R. L.; Zald, D. H.; Samanez-Larkin, G. R.

10.1101/383810 — neuroscience — Posted on 2018-10-08

2205 Microglia Regulate Neuroglia Remodeling in Various Ocular and Retinal Injuries

Paschalis, E. I.; Lei, D.; Zhou, C.; Chen, X.; Kapoulea, V.; Hui, P.-C.; Dana, R.; Chodosh, J.; Vavvas, D.; Dohlman, C. H.

10.1101/366310 — immunology — Posted on 2018-10-08

2206 AYbRAH: a curated ortholog database for yeasts and fungi spanning 600 million years of evolution

Correia, K.; Yu, S. M.; Mahadevan, R.

10.1101/237974 — bioinformatics — Posted on 2018-10-08

2207 Tau accumulation activates STAT1 triggering memory deficits via suppressing NMDA receptor expression

Li, X.; Hong, X.; Wang, Y.; Zhang, S.; Zhang, J.; Li, X.; Liu, Y.; Sun, D.; Feng, Q.; Ye, J.; Gao, Y.; Ke, D.; Wang, Q.; Li, H.; Ye, K.; Liu, G.-P.; Wang, J.-Z.

10.1101/437814 — neuroscience — Posted on 2018-10-08

2208 Distinct waking states for strong evoked responses in primary visual cortex and optimal visual detection performance

Neske, G. T.; McCormick, D. A.

10.1101/437681 — neuroscience — Posted on 2018-10-08

2209 KCC2 regulates neuronal excitability and hippocampal activity via interaction with Task-3 channels

Goutierre, M.; Al Awabdh, S.; Francois, E.; Gomez-Dominguez, D.; Irinopoulou, T.; de la Prida, L. M.; Poncer, J. C.

10.1101/434571 — neuroscience — Posted on 2018-10-08

2210 Pogz deficiency leads to abnormal behavior, transcription dysregulation and impaired cerebellar physiology

Suliman, R.; Title, B.; Cohen, Y.; Tal, M.; Tal, N.; Gudmundsdottir, B.; Gudmundsson, K. O.; Keller, J. R.; Huang, G.-J.; Yarom, Y.; Shifman, S.

10.1101/437442 — genetics — Posted on 2018-10-08

2211 Sox2 and FGF20 define a temporal separation between specification and differentiation required for organ of Corti development

Yang, L. M.; Cheah, K. S. E.; Huh, S.-H.; Ornitz, D. M.

10.1101/436790 — developmental biology — Posted on 2018-10-08

2212 Sperm chemotaxis is driven by the slope of the chemoattractant concentration field

Ramirez-Gomez, H. V.; Jimenez-Sabinina, V.; Tuval, I.; Velazquez-Perez, M.; Beltran, C.; Carneiro, J.; Wood, C.; Darszon, A.; Guerrero, A.

10.1101/148650 — biophysics — Posted on 2018-10-08

2213 Open channel droplet-based microfluidics

Berry, S. B.; Lee, J. J.; Berthier, J.; Berthier, E.; Theberge, A.

10.1101/436675 — bioengineering — Posted on 2018-10-08

2214 Differential effects of corticosteroids and anti-TNF on tumor-specific immune responses - implications for the management of irAEs

Draghi, A.; Borch, T. H.; Radic, H. D.; Chamberlain, C. A.; Gokuldass, A.; Svane, I. M.; Donia, M.

10.1101/437830 — cancer biology — Posted on 2018-10-08

2215 Measuring Selection Across HIV Gag: Combining Physico-Chemistry and Population Genetics

Gilchrist, M. A.; Johnson, E. B.

10.1101/204297 — evolutionary biology — Posted on 2018-10-08

2216 Whole brain imaging reveals distinct spatial patterns of amyloid beta deposition in three mouse models of Alzheimer’s disease

Whitesell, J. D.; Buckley, A. R.; Knox, J. E.; Kuan, L.; Graddis, N.; Pelos, A.; Mukora, A.; Wakeman, W.; Bohn, P.; Ho, A.; Hirokawa, K. E.; Harris, J. A.

10.1101/395236 — neuroscience — Posted on 2018-10-08

2217 Single cell analyses of the effects of Amyloid-beta42 and Interleukin-4 on neural stem/progenitor cell plasticity in adult zebrafish brain

Cosacak, M. I.; Bhattarai, P.; Zhang, Y.; Kizil, C.

10.1101/437467 — neuroscience — Posted on 2018-10-08

2218 Single-cell transcriptome analysis of CD34+ stem cell-derived myeloid cells identifies a CFU-GEMM-like population permissive to human cytomegalovirus infection.

Galinato, M.; Shimoda, K.; Aguiar, A.; Hennig, F.; Boffelli, D.; McVoy, M. A.; Hertel, L.

10.1101/438457 — microbiology — Posted on 2018-10-08

2219 Single-cell RNA-seq identifies a reversible epithelial-mesenchymal transition in abnormally specified epithelia of p63 EEC syndrome

Soares, E.; Xu, Q.; Li, Q.; Qu, J.; Zheng, Y.; Raeven, H. H. M.; Brandao, K.; van den Akker, W. M. R.; Tang, F.; Zhou, H.

10.1101/437632 — developmental biology — Posted on 2018-10-08

2220 In vitro and in vivo phasor analysis of stoichiometry and pharmacokinetics using short lifetime near-infrared dyes and time-gated imaging

Chen, S.-J. K.; Sinsuebphon, N.; Rudkouskaya, A.; Barroso, M.; Intes, X.; Michalet, X.

10.1101/212977 — bioengineering — Posted on 2018-10-08

2221 Distinctive interaction between cognitive networks and the visual cortex in early blind individuals

Abboud, S.; Cohen, L.

10.1101/437988 — neuroscience — Posted on 2018-10-08

2222 High local mutual information drives the response in the human language network

Mollica, F.; Siegelman, M.; Diachek, E.; Piantadosi, S. T.; Mineroff, Z.; Futrell, R.; Fedorenko, E.

10.1101/436204 — neuroscience — Posted on 2018-10-08

2223 On Model Averaging Partial Regression Coefficients

Walker, J. A.

10.1101/133785 — ecology — Posted on 2018-10-08

2224 Model Classification for Uncertainty Reduction in Biochemical Kinetic Models

Miskovic, L.; Beal, J.; Moret, M.; Hatzimanikatis, V.

10.1101/427716 — systems biology — Posted on 2018-10-08

2225 TrkB activation during a critical period mimics the protective effects of early visual experience on the stability of receptive fields in adult superior colliculus

Mudd, D. B.; Balmer, T. S.; Kim, S. Y.; Machhour, N.; Pallas, S. L.

10.1101/435784 — neuroscience — Posted on 2018-10-08

2226 Population-scale study of eRNA transcription reveals bipartite functional enhancer architecture

Kristjandsottir, K.; Kwak, Y.; Tippens, N. D.; Lis, J. T.; Kang, H. M.; Kwak, H.

10.1101/426908 — genomics — Posted on 2018-10-08

2227 Integrative Network and Brain Expression Analysis reveals Mechanistic Modules in Ataxia

Eidhof, I.; van de Warrenburg, B.; Schenck, A.

10.1101/437582 — neuroscience — Posted on 2018-10-08

2228 An introduction to MPEG-G, the new ISO standard for genomic information representation

Alberti, C.; Paridaens, T.; Voges, J.; Naro, D.; Ahmad, J. J.; Ravasi, M.; Renzi, D.; Ribeca, P.; Zoia, G.; Ochoa, I.; Mattavelli, M.; Delgado, J.; Hernaez, M.

10.1101/426353 — bioinformatics — Posted on 2018-10-08

2229 Global metabolomic characterizations of Microcystis spp. highlights clonal diversity in natural bloom-forming populations and expands metabolite structural diversity

Le Manach, S.; Marie, B.; Duval, C.; Marie, A.; Djediat, C.; Catherine, A.; Edery, M.; Bernard, C.

10.1101/407189 — microbiology — Posted on 2018-10-08

2230 Optimised DNA extraction and library preparation for minute arthropods: application to target enrichment in chalcid wasps used for biocontrol.

Cruaud, A.; Nidelet, S.; Arnal, P.; Weber, A.; Fusu, L.; Gumovsky, A.; Huber, J.; Polaszek, A.; Rasplus, J.-Y.

10.1101/437590 — evolutionary biology — Posted on 2018-10-08

2231 The AP-1 complex regulates AXL expression and determines sensitivity to PI3Kα inhibition in esophagus and head and neck squamous cell carcinoma

Bdarny, M.; Prasad, M.; Balaban, N.; Joshua, B.-Z.; Bahat Dinur, A.; Grenman, R.; Cohen, L.; Elkabets, M.

10.1101/415752 — cancer biology — Posted on 2018-10-08

2232 Comprehensive Benchmarking and Integration of Tumour Microenvironment Cell Estimation Methods

Jimenez-Sanchez, A.; Cast, O.; Miller, M.

10.1101/437533 — bioinformatics — Posted on 2018-10-08

2233 Ontology based mining of pathogen-disease associations from literature

Kafkas, S.; Hoehndorf, R.

10.1101/437558 — bioinformatics — Posted on 2018-10-08

2234 Evolved phenological cueing strategies show variable responses to climate change

Edwards, C. B.; Yang, L.

10.1101/436857 — ecology — Posted on 2018-10-08

2235 Genomic characterization of additional cancer-driver genes using a weighted iterative regression accurately modelling background mutation rate

Jiang, L.; Zheng, J.; Kwan, J.; Dai, S.; Li, C.; TO, K. F.; Sham, P.; Zhu, Y.; Li, M.

10.1101/437061 — bioinformatics — Posted on 2018-10-08

2236 Exploring the Correlation between the Cognitive Benefits of Drug Combinations in a Clinical Alzheimer Disease Database and the Efficacies of the Same Drug Combinations Predicted from a Computational Model

Anastasio, T. J.

10.1101/437624 — pharmacology and toxicology — Posted on 2018-10-08

2237 Transection of the ventral hippocampal commissure impairs spatial but not contextual memory in split-brain mice

Jordan, J.; Tong, Y.; Pytte, C.

10.1101/437491 — neuroscience — Posted on 2018-10-08

2238 BIN1 genetic risk factor for Alzheimer is sufficient to induce early structural tract alterations in entorhinal cortex-dentate gyrus pathway and related hippocampal multi-scale impairments

Daudin, R.; Marechal, D.; Wang, Q.; Abe, Y.; Bourg, N.; Sartori, M.; Loe-Mie, Y.; Lipecka, J.; Guerrera, C.; McKenzie, A.; Potier, B.; Dutar, P.; Viard, J.; Lepagnol-Bestel, A.-M.; Winkeler, A.; Hindie, V.; Birling, M.-C.; Lindner, L.; Chevalier, C.; Pavlovic, G.; Reiss, M.; Kranz, H.; Dupuis, G.; Leveque-Fort, S.; Diaz, J.; Davenas, E.; Dembele, D.; Laporte, J.; Thibault-Carpentier, C.; Malissen, B.; Rain, J.-C.; Ciobanu, L.; Le Bihan, D.; Zhang, B.; Herault, Y.; Simonneau, M.

10.1101/437228 — neuroscience — Posted on 2018-10-08

2239 Movement imitation depends on an abstract trajectory representation in dorsal premotor cortex

Wong, A. L.; Jax, S. A.; Smith, L. L.; Buxbaum, L. J.; Krakauer, J. W.

10.1101/294207 — neuroscience — Posted on 2018-10-08

2240 Horizontal acquisition of a patchwork Calvin cycle by symbiotic and free-living Campylobacterota (formerly Epsilonproteobacteria)

Assie, A.; Leisch, N.; Meier, D. V.; Gruber Vodicka, H.; Tegetmeyer, H. E.; Meyerdirks, A.; Kleiner, M.; Hinzke, T.; Joye, S.; Saxton, M.; Dubilier, N.; Petersen, J. M.

10.1101/437616 — microbiology — Posted on 2018-10-08

2241 Interacting effects of the abiotic and biotic environment on fitness of rainforest Drosophila

O'Brien, E. K.; Higgie, M.; Jeffs, C. T.; Hoffmann, A. A.; Hrcek, J.; Lewis, O. T.; Bridle, J. R.

10.1101/395624 — evolutionary biology — Posted on 2018-10-08

2242 A Taxonomic Review and Revisions of Microstomidae (Platyhelminthes: Macrostomorpha)

Atherton, S.; Jondelius, U.

10.1101/381459 — zoology — Posted on 2018-10-08

2243 Decoupling the variances of heterosis and inbreeding effects is evidenced in yeast’s life-history and proteomic traits

Petrizzelli, M.; de Vienne, D.; Dillmann, C.

10.1101/362418 — systems biology — Posted on 2018-10-08

2244 Cortical microinfarcts caused by single penetrating vessel occlusion lead to widespread reorganization across the entire brain in a CX3CR1 dependent manner

Lubart, A.; Benbenishty, A.; Har-Gil, H.; Laufer, H.; Gdalyahu, A.; Assaf, Y.; Blinder, P.

10.1101/437509 — neuroscience — Posted on 2018-10-08

2245 A bacteria-derived tail anchor localizes to peroxisomes in yeast and mammalian cells

Lutfullahoglu-Bal, G.; Seferoglu, A. B.; Keskin, A.; Akdogan, E.; Dunn, C. D.

10.1101/437855 — evolutionary biology — Posted on 2018-10-08

2246 Effect of chronic stimulation and stimulus level on temporal processing by cochlear implant listeners

Carlyon, R. P.; Guerit, F.; Billig, A. J.; Tam, Y. C.; Harris, F.; Deeks, J. M.

10.1101/359869 — neuroscience — Posted on 2018-10-08

2247 A tagging method for very small fish

Solomon-Lane, T. K.; Hofmann, H. A.

10.1101/437772 — animal behavior and cognition — Posted on 2018-10-08

2248 RNA-Seq in 296 phased trios provides a high resolution map of genomic imprinting

10.1101/269449 — genomics — Posted on 2018-10-08

2249 A metastable contact and structural disorder in the estrogen receptor transactivation domain

Peng, Y.; Cao, S.; Kiselar, J.; Xiao, X.; Du, Z.; Hsien, A.; Ko, S.; Chen, Y.; Agrawal, P.; Zheng, W.; Shi, W.; Jiang, W.; Yang, L.; Chance, M.; Surewicz, W.; Buck, M.; Yang, S.

10.1101/332205 — biophysics — Posted on 2018-10-08

2250 DNA methylation oscillation defines classes of enhancers

10.1101/262212 — genomics — Posted on 2018-10-08

2251 Transmission of and susceptibility to seasonal influenza in Switzerland from 2003-2015

Brugger, J.; Althaus, C. L.

10.1101/252437 — epidemiology — Posted on 2018-10-08

2252 Biological Sequence Modeling with Convolutional Kernel Networks

Chen, D.; Jacob, L.; Mairal, J.

10.1101/217257 — bioinformatics — Posted on 2018-10-08

2253 Cytoskeletal tension actively sustains the T cell immunological synapse

Kumari, S.; Mak, M.; Poh, Y.; Tohme, M.; Watson, N.; Melo, M.; Janssen, E.; Dustin, M.; Geha, R.; Irvine, D.

10.1101/437236 — cell biology — Posted on 2018-10-08

2254 Virus infection might cause cells producing black swimming dots

Tang, S.; Yang, X.; Jiang, X.; An, W.; Li, X.; Wang, S.; Li, H.; Wu, Z.; Su, F.; Ma, S.

10.1101/431965 — cell biology — Posted on 2018-10-08

2255 The Hox Transcription Factor Ubx stabilizes Lineage Commitment by Suppressing Cellular Plasticity

Domsch, K.; Carnesecchi, J.; Disela, V.; Friedrich, J.; Trost, N.; Ermakova, O.; Polychronidou, M.; Lohmann, I.

10.1101/437947 — developmental biology — Posted on 2018-10-08

2256 Reconstitution of the equilibrium state of dynamic actin networks

Mogilner, A.; Manhart, A.; Icheva, A.; Guerin, C.; Klar, T.; Boujemaa-Paterski, R.; Thery, M.; Blanchoin, L.

10.1101/437806 — cell biology — Posted on 2018-10-08

2257 The mitochondrial copper chaperone COX11 plays an auxiliary role in the defence against oxidative stress

Radin, I.; Gey, U.; Kost, L.; Steinebrunner, I.; Rödel, G.

10.1101/438101 — cell biology — Posted on 2018-10-08

2258 Correlation of occludin protein mobility with paracellular leak pathway permeability in renal epithelia

Axis, J.; Kolb, A.; Bacallao, R. L.; Amsler, K.

10.1101/437996 — physiology — Posted on 2018-10-08

2259 Empirical Models for Anatomical and Physiological Changes in a Human Mother and Fetus During Pregnancy and Gestation

Kapraun, D.; Wambaugh, J. F.; Setzer, R. W.; Judson, R. S.

10.1101/438119 — developmental biology — Posted on 2018-10-08

2260 Inhibition of platelet function by targeting the platelet cytoskeleton via the LIMK-signaling pathway.

Antonipillai, J.; Rigby, S.; Bassler, N.; Peter, K.; Bernard, O.

10.1101/438051 — cell biology — Posted on 2018-10-08

2261 An open microscopy framework suited for tracking dCas9 in live bacteria

Martens, K. J. A.; van Beljouw, S.; van der Els, S.; Baas, S.; Vink, J. N. A.; Brouns, S. J. J.; van Baarlen, P.; Kleerebezem, M.; Hohlbein, J.

10.1101/437137 — biophysics — Posted on 2018-10-08

2262 Description of cranial elements and ontogenetic change within Tropidolaemus wagleri (Serpentes: Crotalinae)

Hill, N.

10.1101/438093 — zoology — Posted on 2018-10-08

2263 Examining Academic Leaders work in implementing Competency-based Medical Education (CBME) using Organizational Learning Theory

de Montreal, U.; Leduc, N.; Caire Fon, N.; Ste-Marie, L.-G.; Nguyen-Dinh, D.; Boucher, A.

10.1101/438077 — scientific communication and education — Posted on 2018-10-08

2264 Thermal acclimation of photosynthetic activity and Rubisco content in two hybrid poplar clones

Benomar, L.; Moutaoufik, M. T.; Elferjani, R.; Isabel, N.; DesRochers, A.; El Guellab, A.; Khlifa, R.; Idrissi Hassania, L. A.

10.1101/438069 — plant biology — Posted on 2018-10-08

2265 Absence of general rules governing molluscan body-size response to climatic fluctuation during Cenozoic

Chattopadhyay, D.; Chattopadhyay, D.

10.1101/438002 — paleontology — Posted on 2018-10-08

2266 Robust Algorithms for Capturing Population Dynamics and Transport in Oceanic Variables along Drifter Trajectories using Linear Dynamical Systems with Latent Variables

Yan, Y.; Jebara, T.; Abernathey, R.; Goes, J.; Gomes, H.

10.1101/438036 — ecology — Posted on 2018-10-08

2267 Estimation of auditory steady-state responses based on the averaging of independent EEG epochs

Prado, P.; Martinez-Montes, E.; Weinstein, A.; Zanartu, M.

10.1101/438010 — neuroscience — Posted on 2018-10-08

2268 Genetic and environmental influence on the human functional connectome

Reineberg, A. E.; Hatoum, A. S.; Hewitt, J. K.; Banich, M. T.; Friedman, N. P.

10.1101/277996 — neuroscience — Posted on 2018-10-07

2269 Dissociable Roles for Working Memory in Sensorimotor Learning

McDougle, S. D.; Taylor, J. A.

10.1101/290189 — neuroscience — Posted on 2018-10-07

2270 Functional Connectivity of Corticostriatal Circuitry and Psychosis-Like Experiences in the General Community

Sabaroedin, K.; Tiego, J.; Parkes, L.; Sforazzini, F.; Finlay, A.; Johnson, B.; Pinar, A.; Cropley, V.; Harrison, B.; Zalesky, A.; Pantelis, C.; Bellgrove, M.; Fornito, A.

10.1101/437376 — neuroscience — Posted on 2018-10-07

2271 The biodiversity benefit of native forest over Grain-for-Green plantations

Wang, X.; Hua, F.; Wang, L.; Wilcove, D.; Yu, D.

10.1101/437418 — ecology — Posted on 2018-10-07

2272 Classical-contextual interactions in V1 may rely on dendritic computations

JIN, L.; Behabadi, B. F.; Jadi, M. P.; Ramachandra, C. A.; Mel, B. W.

10.1101/436956 — neuroscience — Posted on 2018-10-07

2273 Detecting object boundaries in natural images requires ‘incitatory’ cell-cell interactions

Mel, G. C.; Ramachandra, C.; Mel, B. W.

10.1101/436949 — neuroscience — Posted on 2018-10-07

2274 AIDE: annotation-assisted isoform discovery and abundanceestimation from RNA-seq data

Li, W. V.; Li, S.; Tong, X.; Deng, L.; Shi, H.; Li, J. J.

10.1101/437350 — bioinformatics — Posted on 2018-10-07

2275 Deep Convolutional Network for Animal Sound Classification and Source Attribution using Dual Audio Recordings

Oikarinen, T. P.; Srinivasan, K.; Meisner, O.; Hyman, J. B.; Parmar, S.; Desimone, R.; Landman, R.; Feng, G.

10.1101/437004 — animal behavior and cognition — Posted on 2018-10-07

2276 Beta-band activity in medial prefrontal cortex predicts source memory encoding and retrieval accuracy

Subramaniam, K.; Hinkley, L.; Mizuiri, D.; Kothare, H.; Garrett, C.; Findlay, A.; Houde, J.; Nagarajan, S.

10.1101/437244 — neuroscience — Posted on 2018-10-07

2277 Breaking from the cage and taking over an island: Relentless increase and range expansion of white-winged parakeets in Puerto Rico

Falcon, W.; Tremblay, R. L.

10.1101/437293 — ecology — Posted on 2018-10-07

2278 A statistical simulator scDesign for rational scRNA-seq experimental design

Li, W. V.; Li, J. J.

10.1101/437095 — bioinformatics — Posted on 2018-10-07

2279 Reporter Ion Data Analysis Reduction (R.I.D.A.R) for isobaric proteomics quantification studies

Jenkins, C.; Norris, A.; O'Neill, M.; Das, S.; Andresson, T.; Orsburn, B.

10.1101/437210 — biochemistry — Posted on 2018-10-07

2280 Establishing a causal role for medial prefrontal cortex in reality monitoring

Subramaniam, K.; Kothare, H.; Hinkley, L.; Tarapore, P.; Nagarajan, S.

10.1101/436907 — neuroscience — Posted on 2018-10-07

2281 Unique individual factors shape brain hubs organization of the human functional connectome

Ribeiro, F. L.; Pinaya, W. H. L.; Sato, J. R.; Biazoli Junior, C. E.

10.1101/437335 — neuroscience — Posted on 2018-10-07

2282 Pre-stimulus feedback connectivity biases the content of visual experiences

Rassi, E.; Wutz, A.; Mueller, N.; Weisz, N.

10.1101/437152 — neuroscience — Posted on 2018-10-07

2283 Single cell analyses of the effects of Amyloid-beta42 and Interleukin-4 on neural stem/progenitor cell plasticity in adult zebrafish brain

Cosacak, M. I.; Bhattarai, P.; Zhang, Y.; Kizil, C.

10.1101/437467 — neuroscience — Posted on 2018-10-07

2284 Single-cell RNA-seq identifies a reversible epithelial-mesenchymal transition in abnormally specified epithelia of p63 EEC syndrome

Zhou, H.; Soares, E.; Xu, Q.; Li, Q.; Qu, J.; Zheng, Y.; Raeven, H. H. M.; Brandao, K.; van den Akker, W. M. R.; Tang, F.

10.1101/437632 — developmental biology — Posted on 2018-10-07

2285 Structure of transcribing RNA polymerase II-nucleosome complex

Farnung, L.; Vos, S. M.; Cramer, P.

10.1101/437574 — biochemistry — Posted on 2018-10-07

2286 A population-based atlas of the human pyramidal tract in 410 healthy participants

Chenot, Q.; Tzourio-Mazoyer, N.; Rheault, F.; Descoteaux, M.; Crivello, F.; Zago, L.; Mellet, E.; Jobard, G.; Joliot, M.; Mazoyer, B.; Petit, L.

10.1101/251108 — neuroscience — Posted on 2018-10-07

2287 Pogz deficiency leads to abnormal behavior, transcription dysregulation and impaired cerebellar physiology

Suliman, R.; Title, B.; Cohen, Y.; Tal, M.; Tal, N.; Gudmundsdottir, B.; Gudmundsson, K. O.; Keller, J. R.; Huang, G.-J.; Yarom, Y.; Shifman, S.

10.1101/437442 — neuroscience — Posted on 2018-10-07

2288 Prevotella copri, a potential indicator for high feed efficiency in western steers

Brooke, C. G.; Najafi, N.; Dykier, K. C.; Hess, M.

10.1101/436832 — microbiology — Posted on 2018-10-07

2289 LION/web: a web-based ontology enrichment tool for lipidomic data analysis

Molenaar, M. R.; Jeucken, A.; Wassenaar, T. A.; van de Lest, C. H. A.; Brouwers, J. F.; Helms, J. B.

10.1101/398040 — biochemistry — Posted on 2018-10-07

2290 Large-Scale Annotation of Histopathology Images from Social Media

Schaumberg, A. J.; Juarez, W.; Choudhury, S. J.; Pastrian, L. G.; Pritt, B. S.; Prieto Pozuelo, M.; Sotillo Sanchez, R.; Ho, K.; Zahra, N.; Sener, B. D.; Yip, S.; Xu, B.; Annavarapu, S. R.; Morini, A.; Jones, K. A.; Rosado-Orozco, K.; Sirintrapun, S. J.; Aly, M.; Fuchs, T. J.

10.1101/396663 — pathology — Posted on 2018-10-07

2291 Reward-driven changes in striatal pathway competition shape evidence evaluation in decision-making

Dunovan, K.; Vich, C.; Clapp, M.; Verstynen, T.; Rubin, J.

10.1101/418756 — neuroscience — Posted on 2018-10-07

2292 A novel lipid-polymer system with unique properties has potential in drug delivery and biotechnology applications

Rieth, M. D.; Glover, K. J.

10.1101/437327 — biophysics — Posted on 2018-10-07

2293 SMRT long reads and Direct Label and Stain optical maps allow the generation of a high-quality genome assembly for the European barn swallow (Hirundo rustica rustica)

Formenti, G.; Chiara, M.; Poveda, L.; Francoijs, K.-J.; Bonisoli-Alquati, A.; Canova, L.; Gianfranceschi, L. E. A.; Horner, D.; Saino, N.

10.1101/374512 — genomics — Posted on 2018-10-07

2294 Identifying Gene Expression Programs of Cell-type Identity and Cellular Activity with Single-Cell RNA-Seq

Kotliar, D.; Veres, A.; Nagy, M. A.; Tabrizi, S.; Hodis, E.; Melton, D. A.; Sabeti, P. C.

10.1101/310599 — bioinformatics — Posted on 2018-10-07

2295 Challenges in assessing the roles of nepotism and reciprocity in cooperation networks

Carter, G.; Schino, G.; Farine, D.

10.1101/372516 — animal behavior and cognition — Posted on 2018-10-07

2296 Exploring the mechanistic link between corticosterone and insulin-like growth factor-1 in a wild passerine bird

Toth, Z.; Ouyang, J. Q.; Lendvai, A. Z.

10.1101/306407 — physiology — Posted on 2018-10-07

2297 GrgA as a potential target of selective antichlamydials

Zhang, H.; Vellappan, S.; Tang, M. M.; Bao, X.; Fan, H.

10.1101/437285 — microbiology — Posted on 2018-10-07

2298 Inferring Population Genetics Parameters of Evolving Viruses Using Time-series Data

Zinger, T.; Pennings, P. S.; Stern, A.

10.1101/437483 — evolutionary biology — Posted on 2018-10-07

2299 Experimental manipulation of Heliconius warning patterns reduces harassment of previously mated females.

Merrill, R. M.; Neggazi, S.; Morrison, C. R.; Crisp, R.; McMillan, W. O.

10.1101/437525 — evolutionary biology — Posted on 2018-10-07

2300 Condensin II inactivation in interphase does not affect chromatin folding or gene expression

Abdennur, N.; Schwarzer, W.; Pekowska, A.; Shaltiel, I. A.; Huber, W.; Haering, C. H.; Mirny, L.; Spitz, F.

10.1101/437459 — genomics — Posted on 2018-10-07

2301 Metatranscriptomics and nitrogen fixation from the rhizoplane of maize plantlets inoculated with a group of PGPRs

Gomez-Godinez, L. J.; Ormeno-Orrillo, E.; Martinez-Romero, E.

10.1101/437087 — microbiology — Posted on 2018-10-07

2302 A Novel Denitrification Regulator, Adr, Mediates Denitrification Under Aerobic Conditions in Sinorhizobium meliloti

Slape, C. M.; Patankar, A. V.; Gonzalez, J. E.

10.1101/437079 — microbiology — Posted on 2018-10-07

2303 Cell-type-specific resolution epigenetics without the need for cell sorting or single-cell biology

Rahmani, E.; Schweiger, R.; Rhead, B.; Criswell, L. A.; Barcellos, L. F.; Eskin, E.; Rosset, S.; Sankararaman, S.; Halperin, E.

10.1101/437368 — bioinformatics — Posted on 2018-10-07

2304 A histidine kinase gene is required for large radius root tip circumnutation and surface exploration in rice

Lehner, K. R.; Taylor, I.; McCaskey, E. N.; Jain, R.; Ronald, P. C.; Goldman, D. I.; Benfey, P. N.

10.1101/437012 — plant biology — Posted on 2018-10-07

2305 Longitudinal plasma metabolomics of aging and sex

Darst, B. F.; Koscik, R. L.; Hogan, K. J.; Johnson, S. C.; Engelman, C. D.

10.1101/436931 — molecular biology — Posted on 2018-10-07

2306 Single-cell virus sequencing of influenza infections that trigger innate immunity

Russell, A. B.; Kowalsky, J. R.; Bloom, J. D.

10.1101/437277 — microbiology — Posted on 2018-10-07

2307 IFN-γ selectively suppresses a subset ofTLR4-activated genes and enhancers to potentiate M1-like macrophage polarization

Kang, K.; Park, S. H.; Kang, K.; Ivashkiv, L.

10.1101/437160 — immunology — Posted on 2018-10-07

2308 A Simulation-Based Evaluation of Total-Evidence Dating Under the Fossilized Birth-Death Process

Luo, A.; Duchene, D.; Zhang, C.; Zhu, C.-D.; Ho, S.

10.1101/436303 — evolutionary biology — Posted on 2018-10-07

2309 Genome-wide disruption of DNA methylation by 5-aza-2’-deoxycytidine in the parasitioid wasp Nasonia vitripennis

Cook, N.; Parker, D. J.; Turner, F.; Tauber, E.; Pannebakker, B. A.; Shuker, D. M.

10.1101/437202 — evolutionary biology — Posted on 2018-10-07

2310 Methyl viologen can affect mitochondrial function in Arabidopsis.

Cui, F.; Brosche, M.; Shapiguzov, A.; He, X.-Q.; Vainonen, J.; Leppälä, J.; Trotta, A.; Kangasjärvi, S.; Salojärvi, J.; Kangasjärvi, J.; Overmyer, K.

10.1101/436543 — plant biology — Posted on 2018-10-07

2311 FT/FD-GRF5 repression loop directs growth to increase soybean yield

Xu, K.; Zhang, X.; Yu, G.; Lu, M.; Liu, C.; Chen, H.; Zhu, J.; Chen, F.; Cheng, Z.; Huang, P.; ZHou, X.; Chen, Q.; Feng, X.; Miao, Y.; Liu, L.; Searl, I.; Fu, Y.-F.

10.1101/437053 — plant biology — Posted on 2018-10-07

2312 Black or red: A sex-linked colour polymorphism in a songbird is maintained by balancing selection

Kim, K.-W.; Jackson, B. C.; Zhang, H.; Toews, D. P. L.; Taylor, S. A.; Greig, E. I.; Lovette, I. J.; Liu, M. M.; Davison, A.; Griffith, S. C.; Zeng, K.; Burke, T.

10.1101/437111 — evolutionary biology — Posted on 2018-10-07

2313 Combining Gene Ontology with Deep Neural Networks to Enhance the Clustering of Single Cell RNA-Seq Data

Peng, J.; Wang, X.; Shang, X.

10.1101/437020 — bioinformatics — Posted on 2018-10-07

2314 Targeting translation activity at the ribosome interface with UV-active small molecules

Kandala, D. T.; Del Piano, A.; Minati, L.; Clamer, M.

10.1101/436311 — biochemistry — Posted on 2018-10-07

2315 Inhibiting histone acetyltransferase activity rescues differentiation of emerin-null myogenic progenitors

Bossone, K.; Ellis, J.; Holaska, J.

10.1101/437343 — cell biology — Posted on 2018-10-07

2316 Zika Virus Subverts Stress Granules to Promote and Restrict Viral Gene Expression

Bonenfant, G.; Williams, N.; Netzband, R.; Schwarz, M.; Evans, M. J.; Pager, C. T.

10.1101/436865 — microbiology — Posted on 2018-10-06

2317 ShinyAIM: Shiny-based Application of Interactive Manhattan Plots for Longitudinal Genome-Wide Association Studies

Hussain, W.; Campbell, M.; Walia, H.; Morota, G.

10.1101/383026 — genetics — Posted on 2018-10-06

2318 Population genetics of Paramecium mitochondrial genomes: recombination, mutation spectrum, and efficacy of selection.

Johri, P.; Marinov, G.; Doak, T. G.; Lynch, M.

10.1101/281865 — evolutionary biology — Posted on 2018-10-06

2319 Selection on sperm proteins depends on sperm competition in a pair of Lepidoptera

Mongue, A. J.; Hansen, M. E.; Gu, L.; Sorenson, C. E.; Walters, J. R.

10.1101/404236 — evolutionary biology — Posted on 2018-10-06

2320 SciPipe - A workflow library for agile development of complex and dynamic bioinformatics pipelines

Lampa, S.; Dahlö, M.; Alvarsson, J.; Spjuth, O.

10.1101/380808 — bioinformatics — Posted on 2018-10-06

2321 Spatial patterns of species richness and nestedness in ant assemblages along an elevational gradient in a Mediterranean mountain range

Flores, O.; Seoane, J.; Hevia, V.; Azcarate, F. M.

10.1101/420059 — ecology — Posted on 2018-10-06

2322 Retinal stem cells modulate proliferative parameters to coordinate post-embryonic morphogenesis in the eye of fish

Tsingos, E.; Hoeckendorf, B.; Suetterlin, T.; Kirchmaier, S.; Grabe, N.; Centanin, L.; Wittbrodt, J.

10.1101/437269 — developmental biology — Posted on 2018-10-06

2323 DNA damage in telophase leads to coalescence between segregated sister chromatid loci.

Ayra-Plasencia, J.; Machin, F.

10.1101/437145 — cell biology — Posted on 2018-10-06

2324 Modeling second-order boundary perception: A machine learning approach

DiMattina, C.; Baker, C. L.

10.1101/369041 — neuroscience — Posted on 2018-10-06

2325 Prevention of EloR/KhpA heterodimerization by introduction of site-specific amino acid substitutions renders the essential elongasome protein PBP2b redundant in Streptococcus pneumoniae.

Ruud Winther, A.; Kjos, M.; Stamsas, G. A.; Havarstein, L. S.; Straume, D.

10.1101/435529 — microbiology — Posted on 2018-10-06

2326 NanoJ: a high-performance open-source super-resolution microscopy toolbox

Laine, R.; Tosheva, K.; Gustafsson, N.; Gray, R. D. M.; Almada, P.; Albrecht, D.; Risa, G. T.; Hurtig, F.; Lindas, A.-C.; Baum, B.; Mercer, J.; Leterrier, C.; Pereira, P. M.; Culley, S.; Henriques, R.

10.1101/432674 — bioinformatics — Posted on 2018-10-06

2327 Behavioral flexibility in an OCD mouse model: Impaired Pavlovian reversal learning in SAPAP3 mutants

van den Boom, B. J. G.; Mooij, A. H.; Miseviciute, I.; Denys, D.; Willuhn, I.

10.1101/435172 — animal behavior and cognition — Posted on 2018-10-06

2328 Novel allosteric mechanism of p53 activation by small molecules for targeted anticancer therapy

Zawacka-Pankau, J.; Grinkevich, V. V.; Burmakin, M.; Vema, A.; Ridderstrale, K.; Issaeva, N.; Andreotti, V.; Dickinson, E. R.; Hedstrom, E.; Spinnler, C.; Inga, A.; Larsson, L.-G.; Karlen, A.; Tarasova, O.; Poroikov, V.; Lavrenov, S.; Preobrazhenskaya, M.; Wilhelm, M.; Barran, P. E.; Okorokov, A. L.; Selivanova, G.

10.1101/384248 — cancer biology — Posted on 2018-10-06

2329 mirtronDB: a mirtron knowledge base

Ribeiro da Fonseca, B. H.; Silva Domingues, D.; Rossi Paschoal, A.

10.1101/429522 — bioinformatics — Posted on 2018-10-06

2330 Chance and pleiotropy dominate genetic diversity in complex bacterial environments

Noda-Garcia, L.; Davidi, D.; Korenblum, E.; Elazar, A.; Putintseva, E.; Aharoni, A.; Tawfik, D. S.

10.1101/340828 — microbiology — Posted on 2018-10-06

2331 Attentional Bias Modification is associated with fMRI Response towards Negative Stimuli in Residual Depression: A Randomized Controlled Trial

Hilland, E.; Landro, N. I.; Harmer, C.; Browning, M.; Maglanoc, L. A.; Jonassen, R.

10.1101/322842 — clinical trials — Posted on 2018-10-06

2332 Unliganded progesterone receptor governs estrogen receptor gene expression by regulating DNA methylation in breast cancer cells

Verde, G.; De Llobet, L. I.; Wright, R. H. G.; Quilez, J.; Peiro, S.; Le Dily, F.; Beato, M.

10.1101/192567 — molecular biology — Posted on 2018-10-06

2333 A computational model of the escape response latency in the Giant Fiber System of Drosophila melanogaster

Augustin, H.; Zylbertal, A.; Partridge, L.

10.1101/435362 — neuroscience — Posted on 2018-10-06

2334 Variation in the plasma membrane monoamine transporter (PMAT, encoded in SLC29A4) and organic cation transporter 1 (OCT1, encoded in SLC22A1) and gastrointestinal intolerance to metformin in type 2 diabetes: an IMI DIRECT study

Dawed, A. Y.; Zhou, K.; Leeuwen, N. v.; Mahajan, A.; Robertson, N.; Koivula, R.; Elders, P. J.; Rauh, S. P.; Jones, A. G.; Holl, R. W.; Stingl, J. C.; Franks, P. W.; McCarthy, M. I.; t Hart, L.; Pearson, E. R.

10.1101/436980 — genetics — Posted on 2018-10-06

2335 Defining the developmental program leading to meiosis in maize

Nelms, B.; Walbot, V.

10.1101/434993 — plant biology — Posted on 2018-10-06

2336 Bright and photostable chemigenetic indicators for extended in vivo voltage imaging

Abdelfattah, A. S.; Kawashima, T.; Singh, A.; Novak, O.; Liu, H.; Shuai, Y.; Huang, Y.-C.; Grimm, J. B.; Patel, R.; Friedrich, J.; Mensh, B. D.; Paninski, L.; Macklin, J. J.; Podgorski, K.; Lin, B.-J.; Chen, T.-W.; Turner, G. C.; Liu, Z.; Koyama, M.; Svoboda, K.; Ahrens, M. B.; Lavis, L. D.; Schreiter, E. R.

10.1101/436840 — neuroscience — Posted on 2018-10-06

2337 Loci, genes, and gene networks associated with life history variation in a model ecological organism, Daphnia pulex (complex)

Malcom, J. W.; Juenger, T.; Leibold, M.

10.1101/436733 — genomics — Posted on 2018-10-06

2338 Side-By-Side Analysis Of Alternative Approaches On Multi-Level RNA-Seq Data

Mohorianu, I.

10.1101/131862 — bioinformatics — Posted on 2018-10-06

2339 The role of matrix-oriented salt-bridge on the proton transport in a multimeric uncoupling protein 2

Ardalan, A.; Uwumarenogie, S.; Fish, M.; Sowlati-Hashjin, S.; Karttunen, M.; Smith, M.; Jelokhani-Niaraki, M.

10.1101/430835 — biophysics — Posted on 2018-10-05

2340 Statistical structure of locomotion and its modulation by odors

Tao, L.; Ozarkar, S.; Bhandawat, V.

10.1101/404772 — neuroscience — Posted on 2018-10-05

2341 Deciphering the rules of mRNA structure differentiation in vivo and in vitro with deep neural networks in Saccharomyces cerevisiae

Yu, H.; Meng, W.; Mao, Y.; Zhang, Y.; Sun, Q.; Tao, S.

10.1101/337733 — bioinformatics — Posted on 2018-10-05

2342 Locally distributed abstraction of temporal distance in human parietal cortex

Ye, Q.; Hu, Y.; Ku, Y.; Appiah, K.; Kwok, S. C.

10.1101/249904 — neuroscience — Posted on 2018-10-05

2343 Addressing confounding artifacts in reconstruction of gene co-expression networks

Parsana, P.; Ruberman, C.; Jaffe, A. E.; Schatz, M. C.; Battle, A.; Leek, J. T.

10.1101/202903 — genomics — Posted on 2018-10-05

2344 Realistic in silico generation and augmentation of single cell RNA-seq data using Generative Adversarial Neural Networks

Marouf, M.; Machart, P.; Magruder, D. S. S.; Bansal, V.; Kilian, C.; Krebs, C. F.; Bonn, S.

10.1101/390153 — bioinformatics — Posted on 2018-10-05

2345 Micom: metagenome-scale modeling to infer metabolicinteractions in the microbiota.

Diener, C.; Resendis-Antonio, O.

10.1101/361907 — systems biology — Posted on 2018-10-05

2346 The Rhizoctonia solani LysM and RlpA-like effector proteins contribute to virulence suppressing chitin-triggered immunity and hypersensitive response

Dolfors, F.; Holmquist, L.; Moschou, P.; Dixelius, C.; Tzelepis, G.

10.1101/395582 — plant biology — Posted on 2018-10-05

2347 Evidence for an Integrated Gene Repression Mechanism based on mRNA Isoform Toggling in Human Cells

Hollerer, I.; Barker, J. C.; Jorgensen, V.; Tresenrider, A.; Dugast-Darzacq, C.; Darzacq, X.; Chan, L. Y.; Tjian, R.; Unal, E.; Brar, G. A.

10.1101/264721 — genetics — Posted on 2018-10-05

2348 Anatomy of a pressure sensing protein kinase

Akella, R.; Sekulski, K.; Pleinis, J. M.; Liwocha, J.; Jiou, J.; He, H.; Humphreys, J. M.; Schellinger, J. N.; Joachimiak, L.; Rodan, A. R.; Goldsmith, E. J.

10.1101/435008 — biophysics — Posted on 2018-10-05

2349 A Large-Scale Binding and Functional Map of Human RNA Binding Proteins

Van Nostrand, E. L.; Freese, P.; Pratt, G. A.; Wang, X.; Wei, X.; Blue, S. M.; Dominguez, D.; Cody, N. A. L.; Olson, S.; Sundararaman, B.; Xiao, R.; Zhan, L.; Bazile, C.; Benoit Bouvrette, L. P.; Chen, J.; Duff, M. O.; Garcia, K.; Gelboin-Burkhart, C.; Hochman, M.; Lambert, N. J.; Li, H.; Nguyen, T. B.; Palden, T.; Rabano, I.; Sathe, S.; Stanton, R.; Louie, A. L.; Aigner, S.; Bergalet, J.; Zhou, B.; Su, A.; Wang, R.; Yee, B. A.; Fu, X.-D.; Lecuyer, E.; Burge, C. B.; Graveley, B.; Yeo, G. W.

10.1101/179648 — genomics — Posted on 2018-10-05

2350 Stage-specific transcriptomes and DNA methylomes indicate an early and transient loss of transposon control in Arabidopsis shoot stem cells

Gutzat, R.; Rembart, K.; Nussbaumer, T.; Pisupati, R.; Hofmann, F.; Bradamante, G.; Daubel, N.; Gaidora, A.; Lettner, N.; Dona, M.; Nordborg, M.; Nodine, M.; Mittelsten Scheid, O.

10.1101/430447 — developmental biology — Posted on 2018-10-05

2351 Porter 5: fast, state-of-the-art ab initio prediction of protein secondary structure in 3 and 8 classes

Torrisi, M.; Kaleel, M.; Pollastri, G.

10.1101/289033 — bioinformatics — Posted on 2018-10-05

2352 FAVITES: simultaneous simulation of transmission networks, phylogenetic trees, and sequences

Moshiri, N.; Ragonnet-Cronin, M.; Wertheim, J. O.; Mirarab, S.

10.1101/297267 — bioinformatics — Posted on 2018-10-05

2353 Fetal bovine serum-triggered Titan cell formation and growth inhibition are unique to the Cryptococcus species complex

Dylag, M.; Colon-Reyes, R. J.; Kozubowski, L.

10.1101/435842 — microbiology — Posted on 2018-10-05

2354 Conditional approach as cooperation in predator inspection: a role for serotonin?

Pimentel, A. F. N.; Carvalho, T. d. S.; Lima, F.; Lima-Maximino, M. G.; Soares, M. C.; Maximino, C.

10.1101/436345 — animal behavior and cognition — Posted on 2018-10-05

2355 Blended Bioinformatics Training in Resource-Limited Settings: A case study of challenges and opportunities for implementation

Ahmed, A. E.; Awadallah, A. A.; Tagelsir, M. T.; Suliman, M. A.; Khalil, A. E.; Elsafi, H. M.; Hamdelnile, B. D.; Fadlelmola, F. M.

10.1101/431361 — scientific communication and education — Posted on 2018-10-05

2356 A complex symbiosis involving within species variation in the response of Dictyostelium amoebae to Burkholderia bacteria

Shu, L.; Brock, D. A.; Geist, K. S.; Miller, J. W.; Queller, D. C.; Strassmann, J. E.; DiSalvo, S.

10.1101/436386 — microbiology — Posted on 2018-10-05

2357 Growth-driven displacement of protein aggregates along the cell length ensures partitioning to both daughter cells in Caulobacter crescentus

Schramm, F. D.; Schroeder, K.; Alvelid, J.; Testa, I.; Jonas, K.

10.1101/436394 — microbiology — Posted on 2018-10-05

2358 Trait evolution and historical biogeography shape assemblages of annual killifish

Helmstetter, A. J.; Van Dooren, T. J. M.; Papadopulos, A. S. T.; Igea, J.; Leroi, A. M.; Savolainen, V.

10.1101/436808 — evolutionary biology — Posted on 2018-10-05

2359 Diffusion Acceleration with Gaussian process Estimated Reconstruction (DAGER)

Wu, W.; Koopmans, P. J.; Andersson, J.; Miller, K. L.

10.1101/436550 — neuroscience — Posted on 2018-10-05

2360 A role for VPS35 in Brucella intracellular replication revealed by genome-wide siRNA screening

Casanova, A.; Low, S. H.; Quebatte, M.; Sedzicki, J.; Tschon, T.; Smith, K.; Emmenlauer, M.; Ben-Tekaya, H.; Dehio, C.

10.1101/436246 — microbiology — Posted on 2018-10-05

2361 Inner-membrane GspF of the bacterial type II secretion system is a dimeric adaptor mediating pseudopilus biogenesis

Van Putte, W.; De Vos, T.; Vanden Broeck, W.; Stahlberg, H.; Kudryashev, M.; Savvides, S. N.

10.1101/435982 — microbiology — Posted on 2018-10-05

2362 A complete chromosome substitution mapping panel reveals genome-wide epistasis in Arabidopsis

Wijnen, C. L.; Botet, R.; van de Belt, J.; Deurhof, L.; de Jong, H.; de Snoo, B. C. B.; Dirks, R.; Boer, M. P.; van Eeuwijk, F. A.; Wijnker, E.; Keurentjes, J. J. B.

10.1101/436154 — genetics — Posted on 2018-10-05

2363 Experimental evolution of reproductive isolation from a single natural population

Villa, S. M.; Altuna, J. C.; Ruff, J. S.; Beach, A. B.; Mulvey, L. I.; Poole, E. J.; Campbell, H. E.; Johnson, K. P.; Shapiro, M. D.; Bush, S. E.; Clayton, D. H.

10.1101/436287 — evolutionary biology — Posted on 2018-10-05

2364 High-fat diet intake modulates maternal intestinal adaptations to pregnancy, and results in placental hypoxia and impaired fetal gut development

Gohir, W.; Kennedy, K. M.; Wallace, J. G.; Saoi, M.; Britz-McKibbin, P.; Petrik, J. J.; Surette, M. G.; Sloboda, D. M.

10.1101/436816 — developmental biology — Posted on 2018-10-05

2365 Caring without sharing: Meta-analysis 2.0 for massive genome-wide association studies

Pourshafeie, A.; Bustamante, C. D.; Prabhu, S.

10.1101/436766 — bioinformatics — Posted on 2018-10-05

2366 Empirical noise-mean fitness landscapes and the evolution of gene expression

Schmiedel, J. M.; Carey, L. B.; Lehner, B.

10.1101/436170 — systems biology — Posted on 2018-10-05

2367 Effect of the macroalgae Asparagopsis taxiformis on methane production and the rumen microbiome assemblage

Roque, B. M.; Brooke, C. G.; Ladau, J.; Polley, T.; Marsh, L.; Najafi, N.; Pandey, P.; Singh, L.; Salwen, J. K.; Eloe-Fadrosh, E.; Kebreab, E.; Hess, M.

10.1101/436568 — systems biology — Posted on 2018-10-05

2368 Tomato fruit ripening factor NOR controls leaf senescence

Ma, X.; Balazadeh, S.; Mueller-Roeber, B.

10.1101/436899 — plant biology — Posted on 2018-10-05

2369 Decoding voluntary movements and postural tremor based on thalamic LFPs for closed-loop stimulation for essential tremor

Tan, H.; Debarros, J.; Pogosyan, A.; Aziz, T. Z.; Huang, Y.; Wang, S.; Timmermann, L.; Visser-Vandewalle, V.; Pedrosa, D. J.; Green, A. L.; Brown, P.

10.1101/436709 — neuroscience — Posted on 2018-10-05

2370 Pre-operarative Multivariate Connectome Analysis for Glioma Patients

Crimi, A.; Wiestler, B.; Kirschke, J. S.; Krieg, S. M.

10.1101/436220 — neuroscience — Posted on 2018-10-05

2371 Accurate registration of 3D time-lapse microscopy images

Mousavi Kahaki, S. M.; Wang, S.-L.; Stepanyants, A.

10.1101/436824 — neuroscience — Posted on 2018-10-05

2372 Region-specific differences and areal interactions underlying transitions in epileptiform activity

Codadu, N. K.; Parrish, R. R.; Trevelyan, A. J.

10.1101/435156 — neuroscience — Posted on 2018-10-05

2373 Pore-scale hydrodynamics influence the spatial evolution of bacterial biofilms in a microfluidic porous network

Aufrecht, J. A.; Fowlkes, J. D.; Bible, A. N.; Morrell-Falvey, J.; Doktycz, M. J.; Retterer, S. T.

10.1101/436337 — microbiology — Posted on 2018-10-05

2374 Integrating Vectors for Genetic Studies in the Rare Actinomycete Amycolatopsis marina

Gao, H.; Murugesan, B.; Hossbach, J.; Evans, S.; Stark, M.; Smith, M.

10.1101/436022 — microbiology — Posted on 2018-10-05

2375 Physical and functional interaction between SET1/COMPASS complex component CFP-1 and a Sin3 HDAC complex

Beurton, F.; Stempor, P.; Caron, M.; Appert, A.; Dong, Y.; Chen, R.; Cluet, D.; Coute, Y.; Herbette, M.; Huang, N.; Polveche, H.; Spichty, M.; Bedet, C.; Ahringer, J.; Palladino, F.

10.1101/436147 — genomics — Posted on 2018-10-05

2376 Evaluating an Upper Respiratory Disease Panel on the Portable MinION Sequencer

Lyon, W. J.; Smith, Z. K.; Geier, B.; Baldwin, J. C.; Starr, C. R.

10.1101/436600 — genomics — Posted on 2018-10-05

2377 Evidence for strong fixation bias at 4-fold degenerate sites across genes in the great tit genome

Gossmann, T.; Bockwoldt, M.; Diringer, L.; Schwarz, F.; Schumann, V.-F.

10.1101/436618 — evolutionary biology — Posted on 2018-10-05

2378 Comparison of DNA metabarcoding and morphological identification for stream macroinvertebrate biodiversity assessment and monitoring

Serrana, J. M.; Miyake, Y.; Gamboa, M.; Watanabe, K.

10.1101/436162 — ecology — Posted on 2018-10-05

2379 The dynamics of spawning acts by a semelparous fish and its associated energetic expenses

Tentelier, C.; Bouchard, C.; Bernardin, A.; Tauzin, A.; Aymes, J.-C.; Rives, J.

10.1101/436295 — ecology — Posted on 2018-10-05

2380 Sox2 and FGF20 define a temporal separation between specification and differentiation required for organ of Corti development

Yang, L. M.; Huh, S.-H.; Ornitz, D. M.

10.1101/436790 — developmental biology — Posted on 2018-10-05

2381 PEPOP: new approaches to mimic non-continous epitopes

Demolombe, V.; de Brevern, A.; Felicori, L.; Nguyen, C.; Machado de Avila, R. A.; Valera, L.; Jardin, B.; Lavigne, G.; Lebreton, A.; Molina, F.; Moreau, V.

10.1101/435966 — bioinformatics — Posted on 2018-10-05

2382 Alpha diversity metrics for noisy OTUs

Edgar, R. C.; Flyvbjerg, H.

10.1101/434977 — bioinformatics — Posted on 2018-10-05

2383 Exploratory Gene Ontology Analysis with Interactive Visualization

Zhu, J.; Zhao, Q.; Katsevich, E.; Sabatti, C.

10.1101/436741 — bioinformatics — Posted on 2018-10-05

2384 Length regulation of multiple flagella that self-assemble from a shared pool of components

Fai, T. G.; Mohapatra, L.; Kondev, J.; Amir, A.

10.1101/436360 — systems biology — Posted on 2018-10-05

2385 Methane Reduction Potential of Two Pacific Coast Macroalgae During in-vitro Ruminant Fermentation.

Brooke, C.; Roque, B. M.; Najafi, N.; Gonzalez, M.; Pfefferlen, A.; DeAnda, V.; Ginsburg, D. W.; Harden, M. C.; Nuzhdin, S. V.; Salwen, J.; Kebreab, E.; Hess, M.

10.1101/434480 — systems biology — Posted on 2018-10-05

2386 Synthetic pluripotent bacterial stem cells

Molinari, S.; Shis, D. L.; Chappell, J.; Igoshin, O. A.; Bennett, M. R.

10.1101/436535 — synthetic biology — Posted on 2018-10-05

2387 Nitrate inhibition of nodule formation in Medicago truncatula is mediated by ACC SYNTHASE 10

van Zeijl, A.; Guhl, K.; Xiao, T. T.; Shen, D.; Geurts, R.; Kohlen, W.

10.1101/434829 — plant biology — Posted on 2018-10-05

2388 Sleep restriction caused impaired emotional regulation without detectable brain activation changes - a functional magnetic resonance imaging study

Tamm, S.; Nilsonne, G.; Schwarz, J.; Golkar, A.; Kecklund, G.; Petrovic, P.; Fischer, H.; Akerstedt, T.; Lekander, M.

10.1101/436048 — neuroscience — Posted on 2018-10-05

2389 Sensory experience controls dendritic structure and behavior by distinct pathways involving degenerins

Inberg, S.; Podbilewicz, B.

10.1101/436758 — neuroscience — Posted on 2018-10-05

2390 Metabolites associated with early cognitive changes implicated in Alzheimer’s disease

Darst, B. F.; Jonaitis, E. M.; Koscik, R. L.; Clark, L. R.; Lu, Q.; Hogan, K. J.; Johnson, S. C.; Engelman, C. D.

10.1101/436667 — neuroscience — Posted on 2018-10-05

2391 Locations in the Neocortex: A Theory of Sensorimotor Object Recognition Using Cortical Grid Cells

Lewis, M.; Purdy, S.; Ahmad, S.; Hawkins, J.

10.1101/436352 — neuroscience — Posted on 2018-10-05

2392 Children with cystic fibrosis are infected with multiple subpopulations of Mycobacterium abscessus with different antimicrobial resistance profiles

Shaw, L. P.; Doyle, R. M.; Kavaliunaite, E.; Spencer, H.; Balloux, F.; Dixon, G.; Harris, K. A.

10.1101/436261 — microbiology — Posted on 2018-10-05

2393 Integrated analysis of genomics, longitudinal metabolomics, and Alzheimer’s risk factors among 1,111 cohort participants

Darst, B. F.; Lu, Q.; Johnson, S. C.; Engelman, C. D.

10.1101/436923 — genomics — Posted on 2018-10-05

2394 The SIRAH force field 2.0: Altius, Fortius, Citius

Machado, M. R.; Barrera Guisasola, E. E.; Klein, F.; Sonora, M.; Silva, S.; Pantano, S.

10.1101/436774 — biophysics — Posted on 2018-10-05

2395 Comprehensive in silico Analysis of IKBKAP gene that could potentially cause Familial dysautonomia

Mustafa, M. I.; Osman, E. A.; Abdelmoneiom, A. H.; Hassn, D. M.; Yousif, H. M.; Mahgoub, I. K.; Badawi, R. M.; Albushra, K. A.; Abdelhameed, T. A.; Hassan, M. A.

10.1101/436071 — bioinformatics — Posted on 2018-10-05

2396 Open channel droplet-based microfluidics

Berry, S. B.; Lee, J. J.; Berthier, J.; Berthier, E.; Theberge, A.

10.1101/436675 — bioengineering — Posted on 2018-10-05

2397 Extracellular matrix components are required to protect Bacillus subtilis colonies from T6SS-dependent Pseudomonas invasion and modulate co-colonization of plant

Molina-Santiago, C.; Pearson, J. R.; Navarro, Y.; Berlanga-Clavero, M. V.; Caraballo-Rodriguez, A. M.; Petras, D.; Cazorla, F. M.; de Vicente, A.; Dorrestein, P. C.; Romero, D.

10.1101/429001 — microbiology — Posted on 2018-10-05

2398 Mitochondrial type II NADH dehydrogenase of Plasmodium falciparum is dispensable and not the functional target of putative NDH2 quinolone inhibitors

Ke, H.; Ganesan, S. M.; Dass, S.; Morrisey, J. M.; Pou, S.; Nilsen, A.; Riscoe, M. K.; Mather, M. W.; Vaidya, A. B.

10.1101/436881 — microbiology — Posted on 2018-10-05

2399 Zika Virus Subverts Stress Granules to Promote and Restrict Viral Gene Expression

Bonenfant, G.; Williams, N.; Netzband, R.; Schwarz, M.; Evans, M. J.; Pager, C. T.

10.1101/436865 — microbiology — Posted on 2018-10-05

2400 The perils of interaction prediction

Mao, W.; Kostka, D.; Chikina, M.

10.1101/435065 — genomics — Posted on 2018-10-05

2401 Genetic variability and potential effects on clinical trial outcomes: perspectives in Parkinson’s disease

10.1101/427385 — genomics — Posted on 2018-10-05

2402 DNA analysis of a large collection of shark fins from a US retail shop: species composition, global extent of trade and conservation - a Technical Report from the Monterey Bay Aquarium

Palumbi, S.; Van Houtan, K.; Robinson, K.; Jorgensen, S.

10.1101/433847 — genetics — Posted on 2018-10-05

2403 Actin dynamics drive microvillar motility and clustering during brush border assembly

Meenderink, L. M.; Tyska, M. J.

10.1101/432294 — cell biology — Posted on 2018-10-05

2404 Benchmarking the PEPOP methods for mimicking discontinuous epitopes

Demolombe, V.; de Brevern, A.; Molina, F.; Lavigne, G.; Granier, C.; Moreau, V.

10.1101/435974 — bioinformatics — Posted on 2018-10-05

2405 RegTools: Integrated analysis of genomic and transcriptomic data for discovery of splicing variants in cancer

Feng, Y.-Y.; Ramu, A.; Cotto, K. C.; Skidmore, Z. L.; Kunisaki, J.; Conrad, D. F.; Lin, Y.; Chapman, W.; Uppaulri, R.; Govindan, R.; Griffith, O. L.; Griffith, M.

10.1101/436634 — bioinformatics — Posted on 2018-10-05

2406 Quantitative proteomics of the 2016 WHO Neisseria gonorrhoeae reference strains surveys vaccine candidates and antimicrobial resistance determinants

El-Rami, F. E.; Zielke, R. A.; Wi, T.; Sikora, A. E.; Unemo, M.

10.1101/434753 — microbiology — Posted on 2018-10-05

2407 A novel approach reveals that HLA class 1 single antigen bead-signatures provide a means of high-accuracy pre-transplant risk assessment of acute cellular rejection

Wittenbrink, N.; Herrmann, S.; Blazquez-Navarro, A.; Bauer, C.; Lindberg, E.; Reinke, P.; Sawitzki, B.; Thomusch, O.; Hugo, C.; Babel, N.; Seitz, H.; Or-Guil, M.

10.1101/433318 — immunology — Posted on 2018-10-05

2408 Down syndrome fibroblasts exhibit diminished autophagic clearance and endosomal dysfunction after serum starvation

Aivazidis, S.; Jain, A.; Anderson, C. C.; Orlicky, D. J.; Rauniyar, A. K.; Fritz, K. S.; Harris, P. S.; Siegel, D.; Maclean, K. N.; Roede, J.

10.1101/436782 — cell biology — Posted on 2018-10-05

2409 Targeting RyR2 with a phosphorylation site-specific nanobody Reverses Dysfunction of Failing Cardiomyocytes in Rat

Li, T.; Shen, Y.; Lin, F.; Fu, W.; Liu, S.; Fan, X.; Ye, X.; Tang, Y.; Ding, M.; Yang, Y.; Lei, C.; Hu, S.

10.1101/435875 — pathology — Posted on 2018-10-05

2410 Insights into the structure-driven protein interactivity of RNA molecules

Sanchez de Groot, N.; Armaos, A.; Grana-Montes, R.; Alriquet, M.; Calloni, G.; Vabulas, M.; Tartaglia, G. G.

10.1101/436279 — molecular biology — Posted on 2018-10-05

2411 FoxM1 drives proximal tubule proliferation during repair from acute kidney injury

Chang-Panesso, M.; Kadyrov, F. F.; Lalli, M.; Wu, H.; Ikeda, S.; Kobayashi, A.; Humphreys, B. D.

10.1101/436576 — cell biology — Posted on 2018-10-05

2412 Human telomere repeat binding factor TRF1 replaces TRF2 bound to shelterin core hub TIN2 when TPP1 is absent

Hofr, C.; Janovic, T.; Stojaspal, M.; Veverka, P.; Horakova, D.

10.1101/436014 — biochemistry — Posted on 2018-10-05

2413 Molecular basis for high affinity agonist binding in GPCRs

Warne, T.; Edwards, P.; Dore, A.; Leslie, A. G. W.; Tate, C. G.

10.1101/436212 — biochemistry — Posted on 2018-10-05

2414 Harnessing Notch signaling to decode mechanisms of proteolytic regulation in diverse cell-surface receptors

Hayward, A. N.; Aird, E. J.; Gordon, W. R.

10.1101/436592 — systems biology — Posted on 2018-10-05

2415 Neural markers of category-based selective working memory in aging

Mok, R. M.; O'Donoghue, M. C.; Myers, N. E.; Drazich, E. H. S.; Nobre, A. C.

10.1101/435388 — neuroscience — Posted on 2018-10-05

2416 Potent anti-influenza H7 human monoclonal antibody induces separation of hemagglutinin receptor binding head domains

Turner, H. L.; Pallesen, J.; Lang, S.; Bangaru, S.; Urata, S.; Li, S.; Cottrell, C. A.; Bowman, C. A.; Crowe, J. E.; Wilson, I. A.; Ward, A. B.

10.1101/436642 — immunology — Posted on 2018-10-05

2417 Genomic Bayesian confirmatory factor analysis and Bayesian network to characterize a wide spectrum of rice phenotypes

Yu, H.; Campbell, M. T.; Zhang, Q.; Walia, H.; Morota, G.

10.1101/435792 — genetics — Posted on 2018-10-05

2418 Establishment of murine in vitro blood-brain barrier models using immortalized cell lines: co-cultures of brain endothelial cells, astrocytes, and neurons

Idris, F.; Muharram, S. H.; Zaini, Z.; Diah, S.

10.1101/435990 — cell biology — Posted on 2018-10-05

2419 Defining the RNA Interactome by Total RNA-Associated Protein Purification

Shchepachev, V.; Bresson, S.; Spanos, C.; Petfalski, E.; Fischer, L.; Rappsilber, J.; Tollervey, D.

10.1101/436253 — cell biology — Posted on 2018-10-05

2420 Time-dependent competition between habitual and goal-directed response preparation

Hardwick, R. M.; Forrence, A. D.; Krakauer, J. W.; Haith, A. M.

10.1101/201095 — neuroscience — Posted on 2018-10-05

2421 New insights into the ORF2 capsid protein, a key player of the hepatitis E virus lifecycle

Ankavay, M.; Montpellier, C.; Sayed, I. M.; Saliou, J.-M.; Wychowski, C.; Saas, L.; Duvet, S.; Aliouat-Denis, C.-M.; Farhat, R.; de Masson d'Autume, V.; Meuleman, P.; Dubuisson, J. D.; Cocquerel, L.

10.1101/435933 — microbiology — Posted on 2018-10-05

2422 EICA Fails As An Explanation Of Growth And Defence Evolution Following Multiple Introductions

van Boheemen, L. A.; Bou-Assi, S.; Uesugi, A.; Hodgins, K. A.

10.1101/435271 — evolutionary biology — Posted on 2018-10-05

2423 BioModelos: a collaborative online system to map species distributions

Velasquez-Tibata, J.; Olaya-Rodriguez, M. H.; Lopez-Lozano, D.; Gutierrez, C.; Gonzelez, I.; Londono-Murcia, M. C.

10.1101/432617 — ecology — Posted on 2018-10-05

2424 Interference with HIV infection of the first cell is essential for viral clearance in a pre-exposure prophylaxis model

Sigal, A.; Moyano De Las Muelas, A.; Lustig, G.; Rodel, H. E.; Antal, T.

10.1101/435552 — bioinformatics — Posted on 2018-10-05

2425 USE: An integrative suite for temporally-precise psychophysical experiments in virtual environments

Watson, M. R.; Voloh, B.; Thomas, C. J.; Womelsdorf, T.

10.1101/434944 — neuroscience — Posted on 2018-10-05

2426 Study on the Difference of Prokaryotic Flora Structure on the Surface of Micro-nano Coating with Different Antifouling Property

Gu, Q.; Zhang, A.; Yan, Z.; Guo, C.; Zhang, Z.

10.1101/435909 — molecular biology — Posted on 2018-10-05

2427 Islet Gene View - a tool to facilitate islet research

Asplund, O.; Storm, P.; Ottosson-Laakso, E.; Krus, U.; Korsgren, O.; Mulder, H.; Renstrom, E.; Hansson, O.; Groop, L.; Prasad, R. B.

10.1101/435743 — molecular biology — Posted on 2018-10-05

2428 Yersiniabactin, Colibactin and Wider Resistome Contribute to Enhanced Virulence and Persistence of KPC-2-Producing Klebsiella pneumoniae CG258 in South America

Cerdeira, L. T.; Esposito, F.; Lam, M. M. C.; Wyres, K. L.; Wick, R. R.; Judd, L. M.; Cunha, M. V.; Knobl, T.; Araujo, B. F.; Ribas, R. M.; Cifuentes, S.; Tamariz, J.; Bueno, M. F. C.; Francisco, G. R.; Garcia, D. O.; Gonzalez-Rocha, G.; Gutkind, G.; Holt, K. E.; Lincopan, N.

10.1101/435750 — microbiology — Posted on 2018-10-05

2429 Emergence of enteroaggregative Escherichia coli within the ST131 lineage as a cause of extraintestinal infections

Boll, E. J.; Stegger, M.; Hasman, H.; Roer, L.; Overballe-Petersen, S.; Ng, K.; Scheutz, F.; Hammerum, A. M.; Dungu, A.; Hansen, F.; Lilje, B.; Schroder Hansen, D.; Krogfelt, K. A.; Price, L. B.; Johnson, J. R.; Struve, C.; Olesen, B.

10.1101/435941 — microbiology — Posted on 2018-10-05

2430 16S rRNA:rDNA ratios and cell activity staining reveal consistent patterns of soil microbial activity

Bowsher, A. W.; Kearns, P. J.; Shade, A.

10.1101/435925 — microbiology — Posted on 2018-10-05

2431 Phylogeny, ancestors and anagenesis in the hominin fossil record

Parins-Fukuchi, C.; Greiner, E.; MacLatchy, L. M.; Fisher, D. C.

10.1101/434894 — evolutionary biology — Posted on 2018-10-05

2432 A machine learning approach for the spatiotemporal forecasting of ecological phenomena using dates of species occurrence records

Capinha, C.

10.1101/435289 — ecology — Posted on 2018-10-05

2433 EMBL2checklists: A Python package to facilitate the user-friendly submission of plant DNA barcoding sequences to ENA

Gruenstaeudl, M.; Hartmaring, Y.

10.1101/435644 — bioinformatics — Posted on 2018-10-05

2434 Improving on hash-based probabilistic sequence classification using multiple spaced seeds and multi-index Bloom filters

Chu, J.; Mohamadi, H.; Erhan, E.; Tse, J.; Chiu, R.; Yeo, S.; Birol, I.

10.1101/434795 — bioinformatics — Posted on 2018-10-05

2435 Automatic Human-like Mining and Constructing Reliable Genetic Association Database with Deep Reinforcement Learning

Wang, H.; Liu, X.; Tao, Y.; Ye, W.; Jin, Q.; Cohen, W. W.; Xing, E. P.

10.1101/434803 — bioinformatics — Posted on 2018-10-05

2436 Quasi-universality in single-cell sequencing data

Aparicio, L.; Bordyuh, M.; Blumberg, A. J.; Rabadan, R.

10.1101/426239 — systems biology — Posted on 2018-10-05

2437 Sacubitril/valsartan (LCZ696) Significantly Reduces Aldosterone and Increases cGMP Circulating Levels in a Canine Model of RAAS Activation

Mochel, J. P.; Tang, C. H.; Peyrou, M.; Giraudel, J.; Danhof, M.; Rigel, D.

10.1101/435560 — pharmacology and toxicology — Posted on 2018-10-05

2438 The neurocognitive architecture of fluid ability in children and adolescents

Fuhrmann, D.; Simpson-Kent, I. L.; Bathelt, J.; Kievit, R. A.

10.1101/435719 — neuroscience — Posted on 2018-10-05

2439 Quasi-periodic patterns of brain activity in individuals with Attention-Deficit/Hyperactivity Disorder

Abbas, A.; Bassil, Y.; Keilholz, S.

10.1101/435347 — neuroscience — Posted on 2018-10-05

2440 MOSQUITO TRANSMISSION AND HUMAN HEPATOCYTE INFECTIONS WITH Plasmodium ovale curtisi AND P. ovale wallikeri

Kristan, M.; Thorburn, S. G.; Hafalla, J.; Sutherland, C. J.; Oguike, M. C.

10.1101/435768 — microbiology — Posted on 2018-10-05

2441 Prevention of EloR/KhpA heterodimerization by introduction of site-specific amino acid substitutions renders the essential elongasome protein PBP2b redundant in Streptococcus pneumoniae.

Ruud Winther, A.; Kjos, M.; Stamsås, G. A.; Håvarstein, L. S.; Straume, D.

10.1101/435529 — microbiology — Posted on 2018-10-05

2442 The blind choreographer: evolution of social norms and correlated equilibria

Morsky, B.; Akcay, E.

10.1101/435586 — evolutionary biology — Posted on 2018-10-05

2443 Detection of a novel insect specific flavivirus across ecologically diverse populations of Aedes aegypti on the Caribbean Island of Saint Lucia

Jeffries, C. L.; White, M.; Wilson, L.; Yakob, L.; Walker, T.

10.1101/434183 — ecology — Posted on 2018-10-05

2444 Use of a filter cartridge combined with bead beating improves detection of microbial DNA from water samples

Ushio, M.

10.1101/435305 — ecology — Posted on 2018-10-05

2445 Unsupervised deconvolution of molecular heterogeneity uncovers novel signatures and glia-neuron ratio

Chen, L.; Wang, N.; Liu, C.; Herrington, D.; Clarke, R.; Zhang, Z.; Wang, Y.

10.1101/435677 — bioinformatics — Posted on 2018-10-05

2446 A starless bias in the maximum likelihood phylogenetic methods

Xia, X.

10.1101/435412 — bioinformatics — Posted on 2018-10-05

2447 Transcriptional organization of autism spectrum disorder and its connection to ASD risk genes and phenotypic variation

Gazestani, V. H.; Pramparo, T.; Nalabolu, S.; Kellman, B. P.; Murry, S.; Lopez, L.; Pierce, K.; Courchesne, E.; Lewis, N. E.

10.1101/435917 — systems biology — Posted on 2018-10-05

2448 Multi-lab EcoFAB study shows highly reproducible physiology and depletion of soil metabolites by a model grass

Sasse, J.; Kant, J.; Cole, B. J.; Klein, A. P.; Arsova, B.; Schlaepfer, P.; Gao, J.; Lewald, K.; Zhalnina, K.; Kosina, S.; Bowen, B. P.; Treen, D.; Vogel, J.; Visel, A.; Watt, M.; Dangl, J. L.; Northen, T. R.

10.1101/435818 — plant biology — Posted on 2018-10-05

2449 Rate of photosynthetic acclimation to fluctuating light varies widely among genotypes of wheat

Salter, W. T.; Merchant, A.; Richards, R. A.; Trethowan, R.; Buckley, T. N.

10.1101/435834 — physiology — Posted on 2018-10-05

2450 Population receptive field estimates for motion-defined stimuli

Hughes, A. E.; Greenwood, J. A.; Finlayson, N. J.; Schwarzkopf, D. S.

10.1101/435735 — neuroscience — Posted on 2018-10-05

2451 Leveraging breeding values obtained from random regression models for genetic inference of longitudinal traits

Campbell, M. T.; Walia, H.; Morota, G.

10.1101/435685 — genetics — Posted on 2018-10-05

2452 Variable Effects on Growth and Defence Traits for Plant Ecotypic Differentiation and Phenotypic Plasticity along Elevation Gradients

BAKHTIARI, M.; Formenti, L.; Caggia, V.; Glauser, G.; Rasmann, S.

10.1101/435453 — ecology — Posted on 2018-10-05

2453 Interactions of nuclear transport factors and surface-conjugated FG nucleoporins: Insights and limitations

Hayama, R.; Sorci, M.; Keating, J. J.; Hecht, L. M.; Plawsky, J. L.; Belfort, G.; Chait, B. T.; Rout, M. P.

10.1101/435651 — biophysics — Posted on 2018-10-05

2454 Dynamic G-quadruplexes on the surface of the human ribosome

Mestre-Fos, S.; Penev, P. I.; Suttapitugsakul, S.; Ito, C.; Petrov, A. S.; Wartell, R. M.; Wu, R.; Williams, L. D.

10.1101/435594 — biochemistry — Posted on 2018-10-05

2455 Direct PCR amplification of 16S rRNA genes offers accelerated bacterial identification using the MinION™ nanopore sequencer

Kai, S.; Matsuo, Y.; Nakagawa, S.; Kryukov, K.; Matsukawa, S.; Tanaka, H.; Iwai, T.; Imanishi, T.; Hirota, K.

10.1101/435859 — microbiology — Posted on 2018-10-05

2456 The ligand-mediated affinity of escort proteins determines the directionality of lipophilic cargo transport

Cheng, Y.-Y.; Huang, Y.-F.; Lin, H.-H.; Chang, W.-S. W.; Lyu, P.-C.

10.1101/415984 — biophysics — Posted on 2018-10-05

2457 Sufficient therapeutic effect of cryopreserved frozen adipose-derived regenerative cells on burn wounds

Kaita, Y.; Tarui, T.; Yoshino, H.; Matsuda, T.; Yamaguchi, Y.; Nakagawa, T.; Asahi, M.; Ii, M.

10.1101/436444 — pathology — Posted on 2018-10-05

2458 Division of labour between different PP2A-B56 complexes during mitosis

Vallardi, G.; Allan, L. A.; Crozier, L.; Saurin, A. T.

10.1101/425579 — cell biology — Posted on 2018-10-05

2459 Overcoming Resistance to Anabolic Selective Androgen Receptor Modulator (SARM) Therapy in Experimental Cancer Cachexia with Histone Deacetylase Inhibitor AR-42

Tseng, Y.-C.; Liva, S. G.; Dauki, A. M.; Sovic, M.; Henderson, S. E.; Kuo, Y.-C.; Benedict, J. A.; Kulp, S. K.; Campbell, M.; Bekaii-Saab, T.; Phelps, M. A.; Chen, C.-S.; Coss, C. C.

10.1101/214155 — cancer biology — Posted on 2018-10-05

2460 Altered Gene Regulatory Networks are Associated with the Transition from C3 to Crassulacean Acid Metabolism in Erycina (Oncidiinae: Orchidaceae)

Heyduk, K.; Hwang, M.; Albert, V.; Silvera, K.; Lan, T.; Farr, K. M.; Chang, T.-H.; Chan, M.-T.; Winter, K.; Leebens-Mack, J.

10.1101/431460 — plant biology — Posted on 2018-10-05

2461 TIN2 functions with TPP1/POT1 to stimulate telomerase processivity

Pike, A. M.; Strong, M. A.; Ouyang, J. P. T.; Connelly, C. J.; Greider, C. W.

10.1101/435958 — molecular biology — Posted on 2018-10-05

2462 Gibberellin response in the embryo epidermis regulates germination uniformity in response to seed priming

Mitchell, J.; Mukhtar, N.; Skinner, I.; Bassel, G.

10.1101/436121 — plant biology — Posted on 2018-10-05

2463 Polygenic scores for UK Biobank scale data

Mak, T.; Porsch, R. M.; Choi, S. W.; Sham, P. C.

10.1101/252270 — genomics — Posted on 2018-10-05

2464 Reproducible, flexible and high throughput data extraction from primary literature: The metaDigitise R package

Pick, J. L.; Nakagawa, S.; Noble, D. W.

10.1101/247775 — evolutionary biology — Posted on 2018-10-05

2465 A behavior-manipulating virus relative as a source of adaptive genes for parasitoid wasps

Di Giovanni, D.; Lepetit, D.; Boulesteix, M.; Ravallec, M.; Varaldi, J.

10.1101/342758 — evolutionary biology — Posted on 2018-10-05

2466 Spatial patterns of species richness and nestedness in ant assemblages along an elevational gradient in a Mediterranean mountain range

Flores, O.; Seoane, J.; Hevia, V.; Azc?rate, F. M.

10.1101/420059 — ecology — Posted on 2018-10-05

2467 Stimulus-driven brain rhythms within the alpha band: The attentional-modulation conundrum

Keitel, C.; Keitel, A.; Benwell, C. S.; Daube, C.; Thut, G.; Gross, J.

10.1101/336941 — neuroscience — Posted on 2018-10-05

2468 Active sampling during visual search is modulated by the cardiac cycle

Galvez-Pol, A.; McConnell, R.; Kilner, J.

10.1101/405902 — neuroscience — Posted on 2018-10-05

2469 The thalamus regulates retinoic acid signaling and development of parvalbumin interneurons in postnatal mouse prefrontal cortex

Larsen, R.; Proue, A.; Scott, E. P.; Christiansen, M.; Nakagawa, Y.

10.1101/272427 — neuroscience — Posted on 2018-10-05

2470 Long-term transcriptional activity at zero growth by a cosmopolitan rare biosphere member

Hausmann, B.; Pelikan, C.; Rattei, T.; Loy, A.; Pester, M.

10.1101/284430 — microbiology — Posted on 2018-10-05

2471 Wide and Deep Imaging of Neuronal Activities by a Wearable NeuroImager Reveals Premotor Activity in the Whole Motor Cortex

Kobayashi, T.; Islam, T.; Sato, M.; Ohkura, M.; Nakai, J.; Hayashi, Y.; Okamoto, H.

10.1101/434035 — neuroscience — Posted on 2018-10-05

2472 Rubsicolins are naturally occurring G-protein-biased delta opioid receptor peptides

Cassell, R. J.; Mores, K. L.; Zerfas, B. L.; Mahmoud, A. H.; Lill, M. A.; Trader, D. J.; van Rijn, R. M.

10.1101/433805 — pharmacology and toxicology — Posted on 2018-10-05

2473 A rigorous measure of genome-wide genetic shuffling that takes into account crossover positions and Mendel’s second law

Veller, C.; Kleckner, N.; Nowak, M.

10.1101/194837 — genetics — Posted on 2018-10-05

2474 Detecting within-host interactions from genotype combination prevalence data

Alizon, S.; Murall, C. L.; Saulnier, E.; Sofonea, M. T.

10.1101/256586 — epidemiology — Posted on 2018-10-05

2475 Rabies prevention and control practice and associated factors among dog owners in Aksum town and Laelay-Machew district, north Ethiopia: community based comparative cross-sectional study

Belay, A. G.; Berhe, G.; GEBREZGIHER, L.; Adisu, A.; Letebrhan Gebrezgiher, Gebretsadik Berhe, Aregawi Gebreyesus Belay, Alefech Adisu,

10.1101/436493 — epidemiology — Posted on 2018-10-05

2476 The predictive value of quantitative nucleic acid amplification detection of Clostridium difficile toxin gene for faecal sample toxin status and patient outcome

Davies, K.; Wilcox, M. H.; Planche, T.

10.1101/436451 — microbiology — Posted on 2018-10-05

2477 Molecular detection of virulence and resistance genes in Salmonella enterica serovar Typhi and Paratyphi A, B and C isolated from human diarrhea samples and lettuce in Burkina Faso.

Aly, S.; Somda, N. S.; Bonkoungou, J. I. O.; Traore, O.; Sambe-Ba, B.; Wane, A. A.; Traore, Y.; Gassama-Sow, A.

10.1101/436501 — microbiology — Posted on 2018-10-05

2478 \"Mitochondrial GWAS and Association of Nuclear - Mitochondrial Epistasis with BMI in T1DM Patients\"

Ludwig-Slomczynska, A. H.; Seweryn, M. T.; Kapusta, P.; Pitera, E.; Mantaj, U.; Cyganek, K.; Gutaj, P.; Dobrucka, Łucja; Wender-Ozegowska, E.; Małecki, M. T.; Wołkow, P. P.

10.1101/436519 — genomics — Posted on 2018-10-05

2479 Measuring the importance of vertices in the weighted human disease network

Almasi, S. M.; Hu, T.

10.1101/436402 — bioinformatics — Posted on 2018-10-05

2480 CLEESE: An open-source audio-transformation toolbox for data-driven experiments in speech and music cognition

Burred, J. J.; Ponsot, E.; Goupil, L.; Liuni, M.; Aucouturier, J.-J.

10.1101/436477 — neuroscience — Posted on 2018-10-05

2481 Drinking motives and alcohol use among college students with the alcohol flush reaction: A nationwide study

Oh, S. S.; Ju, Y. J.; Lee, S.; Jang, S.-I.; Park, E.-C.

10.1101/436469 — epidemiology — Posted on 2018-10-05

2482 Would conserving natural land cover in landscapes conserve biodiversity?

De Camargo, R. X.; Currie, D.

10.1101/436410 — ecology — Posted on 2018-10-05

2483 Soleus muscle weakness in Cerebral Palsy: muscle architecture revealed with Diffusion Tensor Imaging

Sahrmann, A. S.; Stott, N. S.; Besier, T. F.; Fernandez, J. W.; Handsfield, G.

10.1101/436485 — bioengineering — Posted on 2018-10-05

2484 Characterization of the gastric motility response to human motilin and erythromycin in human motilin receptor-expressing transgenic mice

Kato, S.; Takahashi, A.; Shindo, M.; Yoshida, A.; Kawamura, T.; Matsumoto, K.; Matsuura, B.

10.1101/436436 — pharmacology and toxicology — Posted on 2018-10-05

2485 KPNA2 promotes cellular proliferation and inhibits apoptosis in the Saos-2 osteosarcoma cell line

Wei, D.; Ge, Q.; Sun, X.; Zhang, L.; Li, J.; Chen, C.; lv, z.; Dinglu WeiQiaofeng GeXiaojuan SunLong ZhangJia LiChenglong ChenZhi Lv,

10.1101/436428 — cancer biology — Posted on 2018-10-05

2486 Alzheimer’s Amyloid-Beta Intermediates Generated by Polymer-Nanodiscs

Sahoo, B.; Genjo, T.; Bekier, M.; Cox, S. J.; Stoddard, A.; Ivanova, M.; Yasuhara, K.; Fierke, C. A.; Wang, Y.; Ramamoorthy, A.

10.1101/435396 — biophysics — Posted on 2018-10-05

2487 Understanding the Ca2+-dependent Fluorescence Change in Red Genetically Encoded Ca2+ Indicators

Molina, R. S.; Qian, Y.; Wu, J.; Shen, Y.; Campbell, R. E.; Hughes, T. E.; Drobizhev, M.

10.1101/435891 — biophysics — Posted on 2018-10-04

2488 Behavioral flexibility in an OCD mouse model: Impaired Pavlovian reversal learning in SAPAP3 mutants

van den Boom, B. J. G.; Mooij, A. H.; Miseviciute, I.; Denys, D.; Willuhn, I.

10.1101/435172 — animal behavior and cognition — Posted on 2018-10-04

2489 Gating TrkB switch by methylglyoxal enables GLO1 as a target for depression

Wu, Z.; Fu, Y.; Yang, Y.; Huang, C.; Zheng, C.; Guo, Z.; Yang, Z.; Chen, X.; Zhu, J.; Wang, J.; Li, X.; Chen, L.; Zhou, W.; Chen, Y.; Wang, J.; Yang, Y.; Jiang, M.; Chen, S.; Lv, A.; Liu, J.; Li, Y.; Sun, S.; Wang, Z.; Xiao, W.; Wang, Y.

10.1101/435867 — neuroscience — Posted on 2018-10-04

2490 Dynamic alterations of retinal EphA5 expression in retinocollicular map plasticity

Cheng, Q.; Graves, M. D.; Pallas, S. L.

10.1101/433904 — neuroscience — Posted on 2018-10-04

2491 TrkB activation during a critical period mimics the protective effects of early visual experience on the stability of receptive fields in adult superior colliculus

Mudd, D. B.; Balmer, T. S.; Kim, S. Y.; Machhour, N.; Pallas, S. L.

10.1101/435784 — neuroscience — Posted on 2018-10-04

2492 Ligand Geometry Controls Adhesion formation via Integrin Clustering

Changede, R.; Cai, H.; Wind, S.; Sheetz, M. P.

10.1101/435826 — cell biology — Posted on 2018-10-04

2493 Heterotypic inter-GPCR β-arrestin coupling regulates lymphatic endothelial junctional architecture in murine lymph nodes

Hisano, Y.; Kono, M.; Engelbrecht, E.; Kawakami, K.; Yanagida, K.; Cartier, A.; Galvani, S.; Kuo, A.; Ono, Y.; Ishida, S.; Aoki, J.; Proia, R. L.; Inoue, A.; Hla, T.

10.1101/435776 — cell biology — Posted on 2018-10-04

2494 Single-cell integrative analysis of CAR-T cell activation reveals a predominantly TH1/TH2 mixed response independent of differentiation

Xhangolli, I.; Dura, B.; Lee, G.; Kim, D.; Fan, R.; Fan, R.

10.1101/435693 — bioengineering — Posted on 2018-10-04

2495 Dynamics and Selective Remodeling of the DNA Binding Domains of RPA

Pokhrel, N.; Caldwell, C. C.; Corless, E. I.; Tillison, E. A.; Tibbs, J.; Jocic, N.; Tabei, A.; Wold, M. S.; Spies, M.; Antony, E.

10.1101/435636 — biochemistry — Posted on 2018-10-04

2496 IMPACT: Genomic annotation of cell-state-specific regulatory elements inferred from the epigenome of bound transcription factors

Amariuta, T.; Luo, Y.; Gazal, S.; Davenport, E. E.; van de Geijn, B.; Westra, H.-J.; Teslovich, N.; Okada, Y.; Yamamoto, K.; RACI Consortium, ; GARNET Consortium, ; Price, A.; Raychaudhuri, S.

10.1101/366864 — genetics — Posted on 2018-10-04

2497 Bazam: A rapid method for read extraction and realignment of high throughput sequencing data

Sadedin, S. P.; Oshlack, A.

10.1101/433003 — bioinformatics — Posted on 2018-10-04

2498 Topographic diversity of structural connectivity in schizophrenia

Ruan, H.; Luo, Q.; Palaniyappan, L.; Lu, W.; Huang, C.-C.; Lo, C.-Y.; Liu, M.-E.; Yang, A. C.; Tsai, S.-J.; Lin, C.-P.; Feng, J.

10.1101/282145 — neuroscience — Posted on 2018-10-04

2499 Modeling second-order boundary perception: A machine learning approach

DiMattina, C.; Baker, C. L.

10.1101/369041 — neuroscience — Posted on 2018-10-04

2500 Unbiased whole genomes from mammalian feces using fluorescence-activated cell sorting

Orkin, J. D.; de Manuel, M.; Krawetz, R.; del Campo, J.; Fontsere, C.; Kuderna, L. F. K.; Lizano, E.; Tang, J.; Marques-Bonet, T.; Melin, A. D.

10.1101/366112 — genomics — Posted on 2018-10-04

2501 chroGPS 2.0: differential analysis of epigenome maps in R.

Reina, O.; Azorin, F.; Stephan-Otto Attolini, C.

10.1101/425892 — bioinformatics — Posted on 2018-10-04

2502 Large-scale, quantitative protein assays on a high-throughput DNA sequencing chip

Layton, C. J.; McMahon, P. L.; Greenleaf, W. J.

10.1101/342808 — molecular biology — Posted on 2018-10-04

2503 Strong diffusional coupling between spines and dendrites promotes long-term potentiation of Schaffer collateral synapses

Yin, S.; Schulze, C.; Oertner, T. G.

10.1101/435446 — neuroscience — Posted on 2018-10-04

2504 Deep learning facilitates rapid cohort identification using human and veterinary clinical narratives

Lopez Pineda, A.; Bear Don't Walk, O. J.; Venkataraman, G. R.; Zehnder, A. M.; Ayyar, S.; Page, R. L.; Bustamante, C. D.; Rivas, M. A.

10.1101/429720 — epidemiology — Posted on 2018-10-04

2505 Levodopa’s effects on expression of reinforcement learning

Grogan, J. P.; Isotalus, H. K.; Howat, A.; Irigoras Izagirre, N.; Knight, L. E.; Coulthard, E. J.

10.1101/434704 — neuroscience — Posted on 2018-10-04

2506 Homologous expression and characterization of gassericin T and gassericin S, a novel class IIb bacteriocin produced by Lactobacillus gasseri LA327

Kasuga, G.; Tanaka, M.; Harada, Y.; Nagashima, H.; Yamato, T.; Wakimoto, A.; Ito, Y.; Kawai, Y.; Kok, J.; Masuda, T.

10.1101/435081 — microbiology — Posted on 2018-10-04

2507 RefSoil+: A reference for antimicrobial resistance genes on soil plasmids

Dunivin, T. K.; Choi, J.; Howe, A. C.; Shade, A.

10.1101/435107 — microbiology — Posted on 2018-10-04

2508 Malaria control dynamics may explain inconsistent outcomes from bednet trials: a modeling study

Orsborne, J.; Walker, T.; Yakob, L.

10.1101/435438 — epidemiology — Posted on 2018-10-04

2509 A Neural Model of Schemas and Memory Consolidation

Hwu, T. J.; Krichmar, J. L.

10.1101/434696 — neuroscience — Posted on 2018-10-04

2510 Managing Marek’s disease in the egg industry

Rozins, C.; Day, T.; Greenhalgh, S.

10.1101/431304 — epidemiology — Posted on 2018-10-04

2511 DNA methylation links prenatal smoking exposure to later life health outcomes in offspring.

10.1101/428896 — epidemiology — Posted on 2018-10-04

2512 Leveraging evolutionary relationships to improve Anopheles genome assemblies

Waterhouse, R. M.; Aganezov, S.; Anselmetti, Y.; Lee, J.; Ruzzante, L.; Reijnders, M. J.; Berard, S.; George, P.; Hahn, M. W.; Howell, P. I.; Kamali, M.; Koren, S.; Lawson, D.; Maslen, G.; Peery, A.; Phillippy, A. M.; Sharakhova, M. V.; Tannier, E.; Unger, M. F.; Zhang, S. V.; Alekseyev, M. A.; Besansky, N. J.; Chauve, C.; Emrich, S. J.; Sharakhov, I. V.

10.1101/434670 — genomics — Posted on 2018-10-04

2513 Dissociable mechanisms govern when and how strongly reward attributes affect decisions

Maier, S. U.; Raja Beharelle, A.; Polania, R.; Ruff, C. C.; Hare, T. A.

10.1101/434860 — neuroscience — Posted on 2018-10-04

2514 Combined strategy of siRNA and osteoclast actin cytoskeleton automated imaging to identify novel regulators of bone resorption shows a non-mitotic function for anillin.

Maurin, J.; Morel, A.; Hassen-Khodja, C.; Vives, V.; Jurdic, P.; Machuca-Gayet, I.; Blangy, A.

10.1101/435297 — cell biology — Posted on 2018-10-04

2515 Triose phosphate utilization and beyond: from photosynthesis to end-product synthesis

McClain, A. M.; Sharkey, T. D.

10.1101/434928 — plant biology — Posted on 2018-10-04

2516 Time calibrated morpho-molecular classification of Nassellaria (Radiolaria)

Mendez Sandin, M.; Pillet, L.; Biard, T.; Poirier, C.; Bigeard, E.; Romac, S.; Suzuki, N.; Not, F.

10.1101/435123 — molecular biology — Posted on 2018-10-04

2517 Telomere DNA G-quadruplex folding within actively extending human telomerase

Jansson, L. I.; Parks, J. W.; Hantschel, J.; Chang, T. R.; Baral, R.; Bagshaw, C. R.; Stone, M. D.

10.1101/435545 — biochemistry — Posted on 2018-10-04

2518 Mesoscale cortical calcium imaging reveals widespread synchronized infraslow activity during social touch in mice

Bolanos, F.; Bolanos, L.; Balbi, M.; Michelson, N.; LeDue, J. M.; Murphy, T. H.

10.1101/430306 — neuroscience — Posted on 2018-10-04

2519 Comparing faster evolving rplB and rpsC versus SSU rRNA for improved microbial community resolution

Guo, J.; Cole, J. R.; Brown, C. T.; Tiedje, J. M.

10.1101/435099 — microbiology — Posted on 2018-10-04

2520 Light-based tuning of ligand half-life supports kinetic proofreading model of T cell activation

Tischer, D.; Weiner, O. D.

10.1101/432864 — immunology — Posted on 2018-10-04

2521 A mechanical model of the half-sarcomere which includes the contribution of titin

Reconditi, M.; Caremani, M.; Pertici, I.

10.1101/435420 — biophysics — Posted on 2018-10-04

2522 Dissecting the pharmacological landscape of cancer cells to reveal novel target populations

Toh, T. S.; Keshava, N.; Dry, J.; Menden, M.; Wang, D.

10.1101/435370 — bioinformatics — Posted on 2018-10-04

2523 Enhancing acute kidney injury regeneration by promoting cellular dedifferentiation in zebrafish

Brilli Skvarca, L.; Han, H. I.; Espiritu, E. B.; Missinato, M. A.; Rochon, E. R.; McDaniels, M. D.; Roman, B. L.; Waxman, J. S.; Watkins, S. C.; Davidson, A. J.; Tsang, M.; Hukriede, N. A.

10.1101/434951 — pharmacology and toxicology — Posted on 2018-10-04

2524 Co-regulation of hormone receptors, neuropeptides, and steroidogenic enzymes across the vertebrate social behavior network

Horton, B. M.; Ryder, T. B.; Moore, I. T.; Balakrishnan, C. N.

10.1101/435024 — neuroscience — Posted on 2018-10-04

2525 More insights into the relation between DNA ionization potentials, single base substitutions and pathogenic mutations

Pucci, F.; Rooman, M.

10.1101/435354 — genomics — Posted on 2018-10-04

2526 Investigating the relationship between insecticide resistance, underlying molecular mechanisms and malaria prevalence in Anopheles gambiae s.l. from Guinea

Collins, E.; Vaselli, N. M.; Sylla, M.; Beavogui, A. H.; Orsborne, J.; Walker, T.; Messenger, L.

10.1101/434688 — genetics — Posted on 2018-10-04

2527 Epigenetic transmission of cardiometabolic risk in offspring discordant for maternal gestational metabolic fitness

Guenard, F.; Marceau, S.; Simard, S.; Kral, J. G.; Vohl, M.-C.; Marceau, P.

10.1101/435461 — developmental biology — Posted on 2018-10-04

2528 Design of an epitope-based peptide vaccine against Cryptococcus neoformans

Khalil, I.; Omer, I.; Farh, I.; Mohamed, H.; Elsharif, H.; Mohamed, A.; Awad-Elkareem, M.; Salih, M.

10.1101/434779 — bioinformatics — Posted on 2018-10-04

2529 Differential Susceptibility of Rat Retinal Ganglion Cell Subtypes Following Optic Nerve Crush

VanderWall, K. B.; Lu, B.; Wang, S.; Meyer, J. S.

10.1101/429282 — neuroscience — Posted on 2018-10-04

2530 Decision and navigation in mouse parietal cortex

Krumin, M.; Lee, J. J.; Harris, K. D.; Carandini, M.

10.1101/166413 — neuroscience — Posted on 2018-10-04

2531 The cellular NMD pathway restricts Zika virus infection and is targeted by the viral capsid protein

Fontaine, K. A.; Leon, K. E.; Khalid, M. M.; Tomar, S.; Jimenez-Morales, D.; Dunlap, M.; Kaye, J. A.; Shah, P. S.; Finkbeiner, S.; Krogan, N. J.; Ott, M.

10.1101/290296 — microbiology — Posted on 2018-10-04

2532 Simulation-based approaches to characterize the effect of sequencing effort on the quantity and quality of metagenome-assembled genomes

Royalty, T. M.; Steen, A. D.

10.1101/356840 — bioinformatics — Posted on 2018-10-04

2533 An ortholog of P. falciparum chloroquine resistance transporter (PfCRT) plays a key role in maintaining the integrity of the endolysosomal system in Toxoplasma gondii to facilitate host invasion

Thornton, L. B.; Teehan, P.; Floyd, K.; Cochrane, C.; Bergmann, A.; Riegel, B.; Roepe, P.; Dou, Z.

10.1101/409904 — microbiology — Posted on 2018-10-04

2534 No Cost of Complexity in Bacteriophages Adapting to a Complex Environment

Sackman, A. M.; Rokyta, D. R.

10.1101/434324 — evolutionary biology — Posted on 2018-10-04

2535 The ATR kinase of Trypanosoma brucei links DNA damage signalling and monoallelic control of surface antigen gene expression during antigenic variation

Black, J. A.; Crouch, K.; Lemgruber, L.; Lapsley, C.; Dickens, N.; Mottram, J. C.; McCulloch, R.

10.1101/435198 — molecular biology — Posted on 2018-10-04

2536 Evolution of influenza genome diversity during infection in immunocompetent patients

Pichon, M.; Simon, B.; Valette, M.; Bal, A.; Picard, C.; Escuret, V.; Ottmann, M.; Gillet, Y.; Ader, F.; Lina, B.; Josset, L.

10.1101/435263 — microbiology — Posted on 2018-10-04

2537 Structural basis of HEAT-kleisin interactions in the human condensin I subcomplex

Hara, K.; Kinoshita, K.; Migita, T.; Murakami, K.; Shimizu, K.; Takeuchi, K.; Hirano, T.; Hashimoto, H.

10.1101/435149 — cell biology — Posted on 2018-10-04

2538 Partially redundant actin genes in Chlamydomonas control transition zone and flagellum-directed protein dynamics.

Jack, B.; Mueller, D. M.; Fee, A. C.; Tetlow, A.; Avasthi, P.

10.1101/227553 — cell biology — Posted on 2018-10-04

2539 Pooled functional genomic screens for intracellular calcium effectors

Rao, A.; Kralj, J.

10.1101/434910 — molecular biology — Posted on 2018-10-04

2540 West Nile virus-inclusive single-cell RNA sequencing reveals heterogeneity in the type I interferon response within single cells

O'Neal, J. T.; Upadhyay, A. A.; Wolabaugh, A.; Patel, N. B.; Bosinger, S. E.; Suthar, M. S.

10.1101/434852 — microbiology — Posted on 2018-10-04

2541 ZIC3 controls the transition from naïve to primed pluripotency.

Yang, S.-H.; Andrabi, M.; Biss, R.; Murtuza Baker, S.; Iqbal, M.; Sharrocks, A.

10.1101/435131 — developmental biology — Posted on 2018-10-04

2542 A systematic review and meta-analysis of the human blood index of the major African malaria vectors

Orsborne, J.; Furuya-Kanamori, L.; Jeffries, C.; Kristan, M.; Mohammed, A.; Afrane, Y.; O'Reilly, K.; Massad, E.; Drakeley, C.; Walker, T.; Yakob, L.

10.1101/424093 — ecology — Posted on 2018-10-04

2543 Prevalence of TMD and level of chronic pain in a group of Brazilian adolescents

Melo Junior, P. C.; Aroucha, J. M. C. N. L.; Arnaud, M.; Lima, M. G. S.; Ximenes, R.; Gomes, S. G. F.; Rosenblatt, A.; Caldas, A. d. F.; Paulo Correia de Melo Junior, Joao Marcilio Coelho Netto Lins Aroucha, Manuela,

10.1101/435479 — epidemiology — Posted on 2018-10-04

2544 The seven transmembrane domain protein MoRgs7 functions in surface perception and undergoes coronin MoCrn1-dependent endocytosis in complex with Gα subunit MoMagA to promote cAMP signaling and appressorium formation in Magnaporthe oryzae

Li, X.; Zhong, K.; Yin, Z.; Hu, J.; Li, L.; Zhang, H.; Zheng, X.; Wang, P.; Zhang, Z.; Xiao Li, Kaili Zhong, Ziyi Yin, Jiexiong Hu, Lianwei Li, Haifeng Zhang, Xiaobo Zheng, Ping Wang, Z,

10.1101/435511 — microbiology — Posted on 2018-10-04

2545 Multiple prebiotic metals mediate translation

Bray, M. S.; Lenz, T. K.; Haynes, J. W.; Bowman, J. C.; Petrov, A. S.; Reddi, A. R.; Hud, N. V.; Williams, L. D.; Glass, J. B.

10.1101/256958 — biochemistry — Posted on 2018-10-04

2546 Modeling visual performance differences with polar angle: A computational observer approach

Kupers, E. R.; Carrasco, M.; Winawer, J.

10.1101/434514 — neuroscience — Posted on 2018-10-04

2547 Intestinal Serum Amyloid A suppresses systemic neutrophil activation and bactericidal activity in response to microbiota colonization

Murdoch, C. C.; Espenschied, S. T.; Matty, M. A.; Mueller, O.; Tobin, D. M.; Rawls, J. F.

10.1101/435503 — immunology — Posted on 2018-10-04

2548 A meta-analysis of Entamoeba histolytica/dispar in Iraq

Chalabi, K. N.

10.1101/435495 — epidemiology — Posted on 2018-10-04

2549 Functional diversity in a tritrophic system: Effects on biomass production, variability, and resilience of ecosystem functions

Ceulemans, R.; Gaedke, U.; Klauschies, T.; Guill, C.

10.1101/431981 — ecology — Posted on 2018-10-04

2550 Snapshots of single particles from single cells using electron microscopy

Yi, X.; Verbeke, E. J.; Chang, Y.; Dickinson, D. J.; Taylor, D. W.

10.1101/435222 — biochemistry — Posted on 2018-10-04

2551 Assessing connectivity despite high diversity in island populations of the malaria mosquito Anopheles gambiae

Bergey, C. M.; Lukindu, M.; Wiltshire, R. M.; Fontaine, M. C.; Kayondo, J. K.; Besansky, N. J.

10.1101/430702 — evolutionary biology — Posted on 2018-10-04

2552 Relative biological effect of alpha particle radiation on low dose phenomena: lethal mutation, hyper-radiosensitivity and increased radioresistance

Fernando, C.; Shi, X.; Byun, S. H.; Seymour, C. B.; Mothersill, C. E.

10.1101/435487 — cell biology — Posted on 2018-10-04

2553 Genetics & the Geography of Health, Behavior, and Attainment

Belsky, D. W.; Caspi, A.; Arseneault, L.; Corcoran, D.; Domingue, B. W.; Mullan Harris, K.; Houts, R.; Mill, J.; Moffitt, T. E.; Prinz, J.; Sugden, K.; Wertz, J.; Williams, B.; Odgers, C.

10.1101/376897 — genetics — Posted on 2018-10-04

2554 Leave-One-Trial-Out (LOTO): A general approach to link single-trial parameters of cognitive Models to neural data

Gluth, S.; Meiran, N.

10.1101/403766 — neuroscience — Posted on 2018-10-04

2555 Genomic signatures accompanying the dietary shift to phytophagy in polyphagan beetles

Seppey, M.; Ioannidis, P.; Emerson, B. C.; Pitteloud, C.; Robinson-Rechavi, M.; Roux, J.; Escalona, H. E.; McKenna, D. D.; Misof, B.; Shin, S.; Zhou, X.; Waterhouse, R. M.; Alvarez, N.

10.1101/399808 — evolutionary biology — Posted on 2018-10-04

2556 Bacterial predator-prey coevolution selects on virulence-associated prey defenses

Nair, R. R.; Vasse, M.; Wielgoss, S.; Sun, L.; Yu, Y.-T. N.; Velicer, G. J.

10.1101/398495 — evolutionary biology — Posted on 2018-10-04

2557 Modelling cancer immunomodulation using epithelial organoid cultures

Bar-Ephraim, Y. E.; Kretzschmar, K.; Asra, P.; de Jongh, E.; Boonekamp, K. E.; Drost, J.; van Gorp, J.; Pronk, A.; Smakman, N.; Gan, I. J.; Sebestyen, Z.; Kuball, J. H.; Vries, R. G.; Clevers, H.

10.1101/377655 — cancer biology — Posted on 2018-10-04

2558 Letrozole increases hippocampal neurogenesis in middle-aged female mice

Chaiton, J.; Wong, S.; Galea, L.

10.1101/434662 — neuroscience — Posted on 2018-10-04

2559 Clonal evolution and genome stability in a 2,500-year-old fungal individual

Anderson, J. B.; Bruhn, J. N.; Kasimer, D.; Wang, H.; Rodrigue, N.; Smith, M. L.

10.1101/377234 — evolutionary biology — Posted on 2018-10-04

2560 Posterior neural tube closure depends on Dlx5/Dlx6 expression at the neural plate border

Narboux-Neme, N.; Ekker, M.; Levi, G.; Heude, E.

10.1101/435321 — developmental biology — Posted on 2018-10-04

2561 Targeting neuronal and glial cell types with synthetic promoter AAVs in mice, non-human primates, and humans

Juettner, J.; Szabo, A.; Gross-Scherf, B.; Morikawa, R.; Rompani, S.; Teixeira, M.; Hantz, P.; Szikra, T.; Esposti, F.; Cowan, C.; Bharioke, A.; Patino, C.; Keles, O.; Roth, C.; Kusnyerik, A.; Gerber-Hollbach, N.; Azoulay, T.; Hartl, D.; Krebs, A.; Schuebeler, D.; Hajdu, R.; Lukats, A.; Nemeth, J.; Nagy, Z.; Wu, K.-C.; Wu, R.-H.; Xiang, L.; Fang, X.-L.; Jin, Z.-B.; Goldblum, D.; Hasler, P.; Scholl, H.; Krol, J.; Roska, B.

10.1101/434720 — neuroscience — Posted on 2018-10-04

2562 On the importance of time scales when studying adaptive evolution

Perrier, C.; Charmantier, A.

10.1101/269175 — evolutionary biology — Posted on 2018-10-04

2563 Preservation of circadian rhythms by the protein folding chaperone, BiP

Pickard, A.; Chang, J.; Alachkar, N.; Calverley, B.; Garva, R.; Arvan, P.; Meng, Q. J.; Kadler, K. E.

10.1101/348078 — cell biology — Posted on 2018-10-04

2564 EpiGraph: an open-source platform to quantify epithelial organization

Vicente-Munuera, P.; Gomez-Galvez, P.; Tetley, R. J.; Forja, C.; Tagua, A.; Letran, M.; Tozluoglu, M.; Mao, Y.; Escudero, L. M.

10.1101/217521 — developmental biology — Posted on 2018-10-04

2565 RECAP reveals the true statistical significance of ChIP-seq peak calls

Chitpin, J. G.; Awdeh, A.; Perkins, T. J.

10.1101/260687 — bioinformatics — Posted on 2018-10-04

2566 Root endophytes improve physiological performance and yield in crops under salt stress by up-regulating the foliar sodium concentration

Molina-Montenegro, M. A.; Acuna-Rodriguez, I. S.; Torres-Diaz, C.; Gundel, P. E.

10.1101/435032 — plant biology — Posted on 2018-10-04

2567 Unleashing floret fertility by a mutated homeobox gene improved grain yield during wheat evolution under domestication

Sakuma, S.; Golan, G.; Guo, Z.; Ogawa, T.; Tagiri, A.; Sugimoto, K.; Bernhardt, N.; Brassac, J.; Mascher, M.; Hensel, G.; Ohnishi, S.; Jinno, H.; Yamashita, Y.; Ayalon, I.; Peleg, Z.; Schnurbusch, T.; Komatsuda, T.

10.1101/434985 — plant biology — Posted on 2018-10-04

2568 Multi-omic profiling of transcriptome and DNA methylome in single nuclei with molecular partitioning

Luo, C.; Liu, H.; Wang, B.-A.; Bartlett, A.; Rivkin, A.; Nery, J. R.; Ecker, J. R.

10.1101/434845 — genomics — Posted on 2018-10-04

2569 Cannabichromene is a cannabinoid CB2 receptor agonist

Udoh, M. P.; Santiago, M. J.; McGregor, I. S.; Connor, M.

10.1101/435057 — pharmacology and toxicology — Posted on 2018-10-04

2570 Biphasic unbinding of Zur from DNA for transcription (de)repression in Live Bacteria

Jung, W.; Chen, P.

10.1101/434738 — biophysics — Posted on 2018-10-04

2571 Deep-learning light-sheet fluorescence microscopy for high-throughput, voxel-super-resolved imaging of biomedical specimens

Zhang, H.; Fang, C.; Fei, P.

10.1101/435040 — biophysics — Posted on 2018-10-04

2572 Widespread cytoplasmic polyadenylation programs asymmetry in the germline and early embryo

Boag, P. R.; Harrison, P. F.; Barugahare, A.; Pattison, A. D.; Swaminathan, A.; Tsyganov, K.; Heinz, E.; Davis, G.; Powell, D. R.; Beilharz, T. H.

10.1101/428540 — developmental biology — Posted on 2018-10-04

2573 Anatomy of a pressure sensing protein kinase

Akella, R.; Sekulski, K.; Pleinis, J. M.; Liwocha, J.; Jiou, J.; He, H.; Humphreys, J. M.; Schellinger, J. N.; Joachimiak, L.; Cobb, M. H.; Rodan, A. R.; Goldsmith, E. J.

10.1101/435008 — biophysics — Posted on 2018-10-04

2574 Structural insight into TRPV5 channel function and modulation

Dang, S.; van Goor, M. K.; Wang, Y.; Julius, D.; Cheng, Y.; van der Wijst, J.

10.1101/434902 — biophysics — Posted on 2018-10-04

2575 Pathogen Detection and Microbiome Analysis of Infected Wheat Using a Portable DNA Sequencer

Hu, Y.; Green, G.; Milgate, A.; Stone, E.; Rathjen, J.; Schwessinger, B.

10.1101/429878 — plant biology — Posted on 2018-10-03

2576 In vivo selection for corrected β-globin alleles after CRISPR/Cas9 editing in human sickle hematopoietic stem cells enhances therapeutic potential

10.1101/432716 — genetics — Posted on 2018-10-03

2577 Changes to the microbiome of the stomach and intestine of Threespine Sticklebacks associated with infection by the cestode Schistocephalus solidus.

Hahn, M. A.; Dheilly, N. M.

10.1101/290015 — microbiology — Posted on 2018-10-03

2578 An unsupervised deep learning framework with variational autoencoders for genome-wide DNA methylation analysis and biologic feature extraction applied to breast cancer

Titus, A. J.; Wilkins, O. M.; Bobak, C. A.; Christensen, B. C.

10.1101/433763 — bioinformatics — Posted on 2018-10-03

2579 Movement context modulates neuronal activity in motor and limbic-associative domains of the human subthalamic nucleus

Marmor, O.; Rapple, P.; Valsky, D.; Bick, A.; Arkadir, D.; Linetzky, E.; Peled, O.; Tamir, I.; Bergman, H.; Israel, Z.; Eitan, R.

10.1101/392936 — neuroscience — Posted on 2018-10-03

2580 Gut Microbiota Diversity across Ethnicities in the United States

Brooks, A. W.; Priya, S.; Blekhman, R.; Bordenstein, S. R.

10.1101/342915 — microbiology — Posted on 2018-10-03

2581 A rigorous measure of genome-wide genetic shuffling that takes into account crossover positions and Mendel’s second law

Veller, C.; Kleckner, N.; Nowak, M.

10.1101/194837 — genetics — Posted on 2018-10-03

2582 High-speed atomic force microscopy visualizes mobility of photosynthetic proteins in grana thylakoid membranes

Onoa, B.; Fukuda, S.; Iwai, M.; Bustamante, C.; Niyogi, K. K.

10.1101/426759 — biophysics — Posted on 2018-10-03

2583 An open-source k-mer based machine learning tool for fast and accurate subtyping of HIV-1 genomes

Solis-Reyes, S.; Avino, M.; Poon, A.; Kari, L.

10.1101/362780 — bioinformatics — Posted on 2018-10-03

2584 BAF chromatin remodeling complex subunit diversity promotes temporally distinct gene expression programs in cardiogenes

Hota, S.; Johnson, J.; Verschueren, E.; Thomas, R.; Blotnick, A.; Zhu, Y.; Sun, X.; Pennacchio, L.; Krogan, N.; Bruneau, B.

10.1101/166983 — developmental biology — Posted on 2018-10-03

2585 Microbial dormancy improves predictability of soil respiration at the seasonal time scale

Salazar, A.; Lennon, J. T.; Dukes, J. S.

10.1101/434654 — microbiology — Posted on 2018-10-03

2586 Hfq-assisted RsmA regulation is central to Pseudomonas aeruginosa biofilm and motility

Irie, Y.; Geyer, J. E.; Shingler, V.

10.1101/434555 — microbiology — Posted on 2018-10-03

2587 Gene fitness landscape of group A streptococcus during necrotizing myositis

Zhu, L.; Olsen, R.; Beres, S.; Eraso, J.; Ojeda Saavedra, M.; Kubiak, S.; Cantu, C.; Jenkins, L.; Charbonneau, A.; Waller, A.; Musser, J.

10.1101/432526 — microbiology — Posted on 2018-10-03

2588 Nutrient acquisition, rather than stress response over diel cycles, drives microbial transcription in a dessicated Namib Desert soil

Leon-Sobrino, C.; Ramond, J.-B.; Maggs-Kölling, G.; Cowan, D. A.

10.1101/432427 — ecology — Posted on 2018-10-03

2589 The human cytomegalovirus G-protein coupled receptor US28 promotes latency by attenuating c-fos

Krishna, B. A.; Humby, M. S.; Miller, W. E.; O'Connor, C. M.

10.1101/434605 — microbiology — Posted on 2018-10-03

2590 TCR-pMHC bond length controls TCR ligand discrimination

Sasmal, D. K.; Feng, W.; Roy, S.; Leung, P.; He, Y.; Cai, C.; Cao, G.; Lian, H.; Qin, J.; Hui, E.; Schreiber, H.; Adams, E.; Huang, J.

10.1101/433938 — immunology — Posted on 2018-10-03

2591 Cadherin-7 mediates proper neural crest cell-placodal neuron interactions during trigeminal ganglia assembly

Wu, C.-Y.; Taneyhill, L. A.

10.1101/434613 — developmental biology — Posted on 2018-10-03

2592 Distinct gene-selective roles for a network of core promoter factors in Drosophila neural stem cell identity.

Neves, A.; Eisenman, R. N.

10.1101/434597 — developmental biology — Posted on 2018-10-03

2593 Structural variants identified by Oxford Nanopore PromethION sequencing of the human genome

De Coster, W.; De Roeck, A.; De Pooter, T.; D'Hert, S.; De Rijk, P.; Strazisar, M.; Sleegers, K.; Van Broeckhoven, C.

10.1101/434118 — bioinformatics — Posted on 2018-10-03

2594 Epithelial WNT2B and Desert Hedgehog are necessary for human colonoid regeneration after bacterial cytotoxin injury

In, J. G.; Yin, J.; Doucet, M.; Cole, R. N.; DeVine, L.; Donowitz, M.; Zachos, N. C.; Blutt, S. E.; Estes, M. K.; Kovbasnjuk, O.

10.1101/434639 — physiology — Posted on 2018-10-03

2595 Striatal-frontal network activation during voluntary task selection under conditions of monetary reward

Orr, J. M.; Imburgio, M. J.; Bernard, J. A.; Banich, M. T.

10.1101/434399 — neuroscience — Posted on 2018-10-03

2596 Central carbon metabolism is an intrinsic factor for optimal replication of a norovirus

Passalacqua, K.; Lu, J.; Goodfellow, I. G.; Kolawole, A. O.; Arche, J. R.; Maddox, R. J.; O'Riordan, M.; Wobus, C. E.

10.1101/434019 — microbiology — Posted on 2018-10-03

2597 Automatic Inference of Sound Correspondence Patterns Across Multiple Languages

List, J.-M.

10.1101/434621 — evolutionary biology — Posted on 2018-10-03

2598 Microscopy-based chromosome conformation capture enables simultaneous visualization of genome organization and transcription in intact organisms

Cardozo Gizzi, A. M.; Cattoni, D. I.; Fiche, J.-B.; Espinola, S.; Gurgo, J.; Messina, O.; Houbron, C.; Ogiyama, Y.; Papadopoulos, G.-L.; Cavalli, G.; Lagha, M.; Nollmann, M.

10.1101/434266 — cell biology — Posted on 2018-10-03

2599 Neuronal adaptation reveals a suboptimal decoding of orientation tuned populations in the mouse visual cortex

Jin, M.; Beck, J. M.; Glickfeld, L.

10.1101/433722 — neuroscience — Posted on 2018-10-03

2600 Dissociable Prefrontal-Cerebellar Networks Underlying Executive Function: Evidence from Resting State Functional Connectivity in the Human Connectome Project

Orr, J. M.; Jackson, T. B.; Imburgio, M. J.; Bernard, J. A.

10.1101/431593 — neuroscience — Posted on 2018-10-03

2601 Multi-species mosaicism of evolutionary origins of genomic loci harboring 59,732 human-specific regulatory sequences reflects a complex continuous speciation process of the human lineage

Glinsky, G.

10.1101/432625 — genomics — Posted on 2018-10-03

2602 Applicability of the mutation-selection balance model to population genetics of heterozygous protein-truncating variants in humans

Weghorn, D.; Balick, D. J.; Cassa, C.; Kosmicki, J.; Daly, M. J.; Beier, D. R.; Sunyaev, S. R.

10.1101/433961 — genetics — Posted on 2018-10-03

2603 Forest quality, forest area and the importance of beta-diversity for protecting Borneo’s beetle biodiversity

Sharp, A.; Barclay, M. V. L.; Chung, A. Y. C.; de Rougemont, G.; Turner, E. C.; Ewers, R. M.

10.1101/434134 — ecology — Posted on 2018-10-03

2604 A high-throughput screen identifies small molecule modulators of alternative splicing by targeting RNA G-quadruplexes

Zhang, J.; Harvey, S. E.; Cheng, C.

10.1101/434647 — cell biology — Posted on 2018-10-03

2605 Genomic prediction of autotetraploids; influence of relationship matrices, allele dosage, and continuous genotyping calls in phenotype prediction

de Bem Oliveira, I.; Resende, M. F.; Ferrao, F.; Amadeu, R.; Endelman, J.; Kirst, M.; Coelho, A. S. G.; Munoz, P. R.

10.1101/432179 — genomics — Posted on 2018-10-03

2606 dream: Powerful differential expression analysis for repeated measures designs

Hoffman, G. E.; Roussos, P.

10.1101/432567 — genomics — Posted on 2018-10-03

2607 mirtronDB: a mirtron knowledge base

Ribeiro da Fonseca, B. H.; Rossi Paschoal, A.; Silva Domingues, D.

10.1101/429522 — bioinformatics — Posted on 2018-10-03

2608 scRNA-seq mixology: towards better benchmarking of single cell RNA-seq protocols and analysis methods

Tian, L.; Dong, X.; Freytag, S.; Le Cao, K.-A.; Su, S.; Amann-Zalcenstein, D.; Weber, T. S.; Seidi, A.; Naik, S.; Ritchie, M. E.

10.1101/433102 — bioinformatics — Posted on 2018-10-03

2609 Diverse food-sensing neurons trigger idiothetic local search in Drosophila

Corfas, R. A.; Dickinson, M. H.

10.1101/433771 — animal behavior and cognition — Posted on 2018-10-03

2610 The chemistry and pharmacology of putative synthetic cannabinoid receptor agonist (SCRA) new psychoactive substances (NPS) 5F-PY-PICA, 5F-PY-PINACA, and their analogues

Banister, S.; Kevin, R.; Martin, L.; Adams, A.; Macdonald, C.; Manning, J.; Rochelle, B.; Michael, C.; Stevens, M.; McGregor, I.; Glass, M.; Connor, M.; Gerona, R.

10.1101/430959 — pharmacology and toxicology — Posted on 2018-10-03

2611 Guiding dose selection of monoclonal antibodies using a new parameter (AFTIR) for characterizing ligand binding systems

Ahmed, S.; Ellis, M.; Li, H.; Pallucchini, L.; Stein, A. M.

10.1101/432500 — pharmacology and toxicology — Posted on 2018-10-03

2612 Purkinje cell number-correlated cerebrocerebellar circuit anomaly in the valproate model of autism

Spisak, T.; Roman, V.; Papp, E.; Kedves, R.; Saghy, K.; Csolle, C. K.; Varga, A.; Gajari, D.; Nyitrai, G. E.; Spisak, Z.; Kincses, Z. T.; Levay, G.; Lendvai, B.; Czurko, A.

10.1101/434217 — neuroscience — Posted on 2018-10-03

2613 Modeling visual performance differences with polar angle: A computational observer approach

Kupers, E. R.; Carrasco, M.; Winawer, J.

10.1101/434514 — neuroscience — Posted on 2018-10-03

2614 Rationally designed mariner vectors to allow functional genomic analysis of Actinobacillus pleuropneumoniae and other bacteria by transposon-directed insertion-site sequencing (TraDIS)

Bosse, J. T.; Li, Y.; Leanse, L. G.; Zhou, L.; Chaudhuri, R. R.; Peters, S. E.; Wang, J.; Maglennon, G. A.; Holden, M. T. G.; Maskell, D. J.; Tucker, A. W.; Wren, B. W.; Rycroft, A. N.; Langford, P. R.; BRaDP1T consortium,

10.1101/433086 — microbiology — Posted on 2018-10-03

2615 Selective sweep and phylogenetic models for the emergence and spread of pyrimethamine resistance mutations in Plasmodium vivax

Shaukat, A.; Ali, Q.; Connelley, T.; Ullah Khan, M. A.; Saleem, M. A.; Rashid, I.; Sargison, N.; Chaudhry, U.

10.1101/433128 — evolutionary biology — Posted on 2018-10-03

2616 Andaman mangrove sediments: source of nutrients and sink of heavy metals

Mishra, A. K.; Kumar, M.

10.1101/431262 — ecology — Posted on 2018-10-03

2617 WindSTORM: Robust online image processing for high-throughput nanoscopy

Ma, H.; Xu, J.; Liu, Y.

10.1101/434415 — bioinformatics — Posted on 2018-10-03

2618 Silhouette width using generalized mean - a flexible method for assessing clustering efficiency

Lengyel, A.; Botta-Dukat, Z.

10.1101/434100 — bioinformatics — Posted on 2018-10-03

2619 Study of the action of lactic acid bacteria on acrylamide in food products

Surana, P.; Singh, S.; Manokaran, S.; Reddy, M. A.

10.1101/432898 — biochemistry — Posted on 2018-10-03

2620 Crystallographic and kinetic analyses of human IPMK reveal disordered domains modulate ATP binding and kinase activity.

Seacrist, C. D.; Blind, R. D.

10.1101/434308 — biochemistry — Posted on 2018-10-03

2621 The Effects of Global Signal Regression on Estimates of Resting-state BOLD fMRI and EEG Vigilance Correlations

Falahpour, M.; Nalci, A.; Liu, T.

10.1101/433912 — neuroscience — Posted on 2018-10-03

2622 High-performance GFP-based calcium indicators for imaging activity in neuronal populations and microcompartments

Dana, H.; Sun, Y.; Mohar, B.; Hulse, B.; Hasseman, J. P.; Tsegaye, G.; Tsang, A.; Wong, A.; Patel, R.; Macklin, J. J.; Chen, Y.; Konnerth, A.; Jayaraman, V.; Looger, L. L.; Schreiter, E. R.; Svoboda, K.; Kim, D. S.

10.1101/434589 — neuroscience — Posted on 2018-10-03

2623 Genetic variants influence on the placenta regulatory landscape

Delahaye, F.; Do, C.; Kong, Y.; Ashkar, R.; Salas, M.; Tycko, B.; Wapner, R.; Hughes, F.

10.1101/432211 — genomics — Posted on 2018-10-03

2624 Termination of non-coding transcription in yeast relies on both a CTD-interaction domain and a CTD-mimic in Sen1

Han, Z.; Jasnovidova, O.; Tudek, A.; Kubicek, K.; Libri, D.; Stefl, R.; Porrua, O.

10.1101/433045 — genetics — Posted on 2018-10-03

2625 Thermal acclimation of leaf respiration consistent with optimal plant function

Wang, H.; Atkin, O.; Keenan, T.; Smith, N.; Wright, I.; Bloomfield, K.; Kettge, J.; Reich, P.; Prentice, C.

10.1101/434084 — ecology — Posted on 2018-10-03

2626 PCAGO: An interactive web service to analyze RNA-Seq data with principal component analysis

Gerst, R.; Hölzer, M.

10.1101/433078 — bioinformatics — Posted on 2018-10-03

2627 Bazam : A rapid method for read extraction and realignment of high throughput sequencing data

Sadedin, S. P.; Oshlack, A.

10.1101/433003 — bioinformatics — Posted on 2018-10-03

2628 Protein model quality assessment using 3D oriented convolutional neural networks

Pages, G.; Charmettant, B.; Grudinin, S.

10.1101/432146 — bioinformatics — Posted on 2018-10-03

2629 Finding structure in multi-armed bandits

Schulz, E.; Franklin, N. T.; Gershman, S. J.

10.1101/432534 — animal behavior and cognition — Posted on 2018-10-03

2630 Identification of C elegans strains using a fully convolutional neural network on behavioural dynamics

Javer, A.; Brown, A. E. X.; Kokkinos, I.; Rittscher, J.

10.1101/433052 — animal behavior and cognition — Posted on 2018-10-03

2631 Synchronised spiking activity underlies phase amplitude coupling in the subthalamic nucleus of Parkinson’s disease patients

Meidahl, A. C.; Moll, C. K. E.; van Wijk, B.; Gulberti, A.; Tinkhauser, G.; Westphal, M.; Engel, A. K.; Hamel, W.; Brown, P.; Sharott, A.

10.1101/433334 — neuroscience — Posted on 2018-10-03

2632 Histone deacetylase inhibitor treatment promotes spontaneous caregiving behavior in C57BL/6J male mice

Mayer, H. S.; Crepeau, M.; Duque-Wilckens, N.; Torres, L. Y.; Trainor, B. C.; Stolzenberg, D. S.

10.1101/433995 — neuroscience — Posted on 2018-10-03

2633 pyPhotometry: Open source Python based hardware and software for fiber photometry data acquisition.

Akam, T.; Walton, M. E.

10.1101/434225 — neuroscience — Posted on 2018-10-03

2634 Spring mineral water-borne bacteria reshape gut microbiota profiles and confer health benefits

Chen, Y.-P.; Tan, L.-L.; Chen, D.-M.; Song, J.-P.; Xu, Q.; Zeng, Q.-P.

10.1101/433821 — microbiology — Posted on 2018-10-03

2635 Endogenous retroviruses transcriptional modulation after severe infection, trauma and burn.

TABONE, O.; Mommert, M.; Jourdan, C.; Cerrato, E.; Legrand, M.; Lepape, A.; Allaouchiche, B.; Rimmele, T.; Pachot, A.; Monneret, G.; Venet, F.; Mallet, F.; Textoris, J.

10.1101/433029 — immunology — Posted on 2018-10-03

2636 One Health genomic surveillance of Escherichia coli demonstrates distinct lineages and mobile genetic elements in isolates from humans versus livestock

Ludden, C.; Raven, K. E.; Jamrozy, D. M.; Gouliouris, T.; Blane, B.; Coll, F.; de Goffau, M.; Naydenova, P.; Horner, C. S.; Hernandez-Garcia, J.; Wood, P.; Hadjirin, N.; Radakovic, M.; Brown, N.; Holmes, M. A.; Parkhill, J.; Peacock, S. J.

10.1101/434001 — genomics — Posted on 2018-10-03

2637 Cell-type-specific methylome-wide association studies implicate neurodegenerative processes and neuroimmune communication in major depressive disorder

Chan, R. F.; Turecki, G.; Shabalin, A. A.; Guintivano, J.; Zhao, M.; Xie, L. Y.; van Grootheest, G.; Kaminsky, Z. A.; Dean, B.; Penninx, B. W. J. H.; Aberg, K. A.; van den Oord, E. J. C. G.

10.1101/432088 — genomics — Posted on 2018-10-03

2638 Functional diversity in a tritrophic system: Effects on biomass production, variability, and resilience of ecosystem functions

Ceulemans, R.; Gaedke, U.; Klauschies, T.; Guill, C.

10.1101/431981 — ecology — Posted on 2018-10-03

2639 chroGPS 2.0: differential analysis of epigenome maps in R.

Reina, O.; Azorin, F.; Stephan-Otto Attolini, C.

10.1101/425892 — bioinformatics — Posted on 2018-10-03

2640 Unsupervised integration of multimodal dataset identifies novel signatures of health and disease

Shomorony, I.; Cirulli, E. T.; Huang, L.; Napier, L. A.; Heister, R. R.; Hicks, M.; Cohen, I. V.; Yu, H.-C.; Swisher, C. L.; Schenker-Ahmed, N. M.; Li, W.; Kahn, A. M.; Spector, T. D.; Caskey, C. T.; Venter, J. C.; Karow, D. S.; Kirkness, E. F.; Shah, N.

10.1101/432641 — bioinformatics — Posted on 2018-10-03

2641 Novel Data Transformations for RNA-seq Data Analysis

Zhang, Z.; Yu, D.; Seo, M.; Hersh, C. P.; Weiss, S. T.; Qiu, W.

10.1101/432690 — bioinformatics — Posted on 2018-10-03

2642 The MER41 family of HERVs is uniquely involved in the immune-mediated regulation of cognition/behavior-related genes: pathophysiological implications for autism spectrum disorders

Nataf, S.; Uriagereka, J.; Benitez-Burraco, A.

10.1101/434209 — neuroscience — Posted on 2018-10-03

2643 The social situation affects how we process feedback about our actions

Czeszumski, A.; Ehinger, B. V.; Wahn, B.; König, P.

10.1101/428052 — neuroscience — Posted on 2018-10-03

2644 A Bayesian psychophysics model of sense of agency

Legaspi, R.; Toyoizumi, T.

10.1101/433888 — neuroscience — Posted on 2018-10-03

2645 TgCep250 is dynamically processed through the division cycle and essential for structural integrity of the Toxoplasma centrosome

Chen, C.-T.; Gubbels, M.-J.

10.1101/433466 — microbiology — Posted on 2018-10-03

2646 Innate Immune Priming by cGAS as a Preparatory Countermeasure Against RNA Virus Infection

Parker, M. T.; Gopinath, S.; Perez, C. E.; Linehan, M. M.; Crawford, J.; Iwasaki, A.; Lindenbach, B. D.

10.1101/434027 — immunology — Posted on 2018-10-03

2647 The genetic relationship between female reproductive traits and six psychiatric disorders

Ni, G.; Amare, A.; Zhou, X.; Mills, N.; Gratten, J.; Lee, S. H.

10.1101/433946 — genetics — Posted on 2018-10-03

2648 The effect of X-linked dosage compensation on complex trait variation

Sidorenko, J.; Kassam, I.; Kemper, K.; Zeng, J.; Lloyd-Jones, L.; Montgomery, G. W.; Gibson, G.; Metspalu, A.; Esko, T.; Yang, J.; McRae, A. F.; Visscher, P. M.

10.1101/433870 — genetics — Posted on 2018-10-03

2649 Creating basis for introducing NIPT in the Estonian public health setting

Zhilina, O.; Rekker, K.; Kaplinski, L.; Sauk, M.; Paluoja, P.; Teder, H.; Ustav, E.-L.; Tonisson, N.; Ridnoi, K.; Palta, P.; Krjutshkov, K.; Kurg, A.; Salumets, A.

10.1101/431924 — genetics — Posted on 2018-10-03

2650 No Cost of Complexity in Bacteriophages Adapting to a Complex Environment

Sackman, A. M.; Rokyta, D. R.

10.1101/434324 — evolutionary biology — Posted on 2018-10-03

2651 Effects of radiofrequency electromagnetic radiation (RF-EMF) on honey bee queen development and mating success

Odemer, R.; Odemer, F.

10.1101/434142 — ecology — Posted on 2018-10-03

2652 Elevated trace elements in Posidonia oceanica and Cymodocea nodosa at six Mediterranean volcanic seeps

Mishra, A. K.; Santos, R. O.; Hall-Spencer, J. M.

10.1101/433987 — ecology — Posted on 2018-10-03

2653 Using a large-scale biodiversity monitoring dataset to test the effectiveness of protected areas in conserving North-American breeding birds

Cazalis, V.; Belghali, S.; Rodrigues, A. S. L.

10.1101/433037 — ecology — Posted on 2018-10-03

2654 Distinct Sources of a Bovine Blastocyst Digital Image do not Produce the Same Classification by a Previously Trained Software using Artificial Neural Network

Guilherme, V. B.; Pronunciate, M.; dos Santos, P. H.; Ciniciato, D. d. S.; Takahashi, M. B.; Rocha, J. C.; Nogueira, M. F. G.

10.1101/424028 — developmental biology — Posted on 2018-10-03

2655 Blood flow-mediated gene transfer and siRNA-knockdown in the developing vasculature in a spatio-temporally controlled manner in chicken embryos

Takase, Y.; Takahashi, Y.

10.1101/434068 — developmental biology — Posted on 2018-10-03

2656 Efficient feature selection on gene expression data: Which algorithm to use?

Tsagris, M.; Papadovasilakis, Z.; Lakiotaki, K.; Tsamardinos, I.

10.1101/431734 — bioinformatics — Posted on 2018-10-03

2657 Using micro-CT techniques to explore the role of sex and hair in the functional morphology of bumblebee (Bombus terrestris) ocelli

Wilby, D.; Aarts, T.; Tichit, P.; Bodey, A.; Rau, C.; Taylor, G.; Baird, E.

10.1101/433979 — physiology — Posted on 2018-10-03

2658 Multi-scale Imaging Reveals Aberrant Connectome Organization and Elevated Dorsal Striatal Arc Expression in Advanced Age

Colon-Perez, L. M.; Turner, S. M.; Lubke, K. N.; Febo, M.; Burke, S. N.

10.1101/434191 — neuroscience — Posted on 2018-10-03

2659 Wide and Deep Imaging of Neuronal Activities by a Wearable NeuroImager Reveals Premotor Activity in the Whole Motor Cortex

Kobayashi, T.; Islam, T.; Sato, M.; Ohkura, M.; Nakai, J.; Hayashi, Y.; Okamoto, H.

10.1101/434035 — neuroscience — Posted on 2018-10-03

2660 Single neurons in the human entorhinal cortex remap to distinguish individual spatial memories

10.1101/433862 — neuroscience — Posted on 2018-10-03

2661 An E3 ubiquitin ligase from Nicotiana benthamiana targets the replicase of Bamboo mosaic virus and restricts its replication

Chen, I.-H.; Chang, J.-E.; Wu, C.-Y.; Huang, Y.-P.; Hsu, Y.-H.; Tsai, C.-H.

10.1101/434076 — microbiology — Posted on 2018-10-03

2662 GWAS using 2b-RAD sequencing identified three mastitis important SNPs via two-stage association analysis in Chinese Holstein cows.

Yang, F.; Chen, F.; Li, L.; Yan, L.; Badri, T.; Lv, C.; Yu, D.; Chen, J.; Xing, C.; Li, J.; Wang, G.; Li, H.; Li, J.; Cai, Y.

10.1101/434340 — genomics — Posted on 2018-10-03

2663 Fluctuating selection strength and intense male competition underlie variation and exaggeration of a water strider’s male weapon

Toubiana, W.; Khila, A.

10.1101/430314 — evolutionary biology — Posted on 2018-10-03

2664 Plasmid transfer is biased towards close kin in bacteria from natural populations.

Dimitriu, T.; Marchant, L.; Buckling, A.; Raymond, B.

10.1101/434282 — ecology — Posted on 2018-10-03

2665 Brg1 controls neurosensory cell fate commitment and differentiation in the mammalian inner ear

Xu, P.-X.; Xu, J.; Li, J.; Loh, Y.-H. E.; Zhang, T.; Jiang, H.; Fritzsch, B.; Ramakrishnan, A.; Shen, L.

10.1101/434159 — developmental biology — Posted on 2018-10-03

2666 Cellular advective-diffusion drives the emergence of bacterial surface colonization patterns and heterogeneity

Rossy, T.; Nadell, C. D.; Persat, A.

10.1101/434167 — biophysics — Posted on 2018-10-03

2667 An enhanced-sampling MD-based protocol for molecular docking

Basciu, A.; Malloci, G.; Pietrucci, F.; Bonvin, A. M. J. J.; Vargiu, A. V.

10.1101/434092 — biophysics — Posted on 2018-10-03

2668 Electrospun Cellulose-Silk Composite Nanofibres Direct Mesenchymal Stem Cell Chondrogenesis in the Absence of Biological Stimulation

Begum, R.; Su, B.; Perriman, A.; Scarpa, F.; Kafienah, W.

10.1101/434316 — bioengineering — Posted on 2018-10-03

2669 Coordinated downregulation of the photosynthetic apparatus as a protective mechanism against UV exposure in the diatom Corethron hystrix

Read, R. W.; Vuono, D. C.; Neveux, I.; Staub, C.; Grzymski, J. J.

10.1101/252668 — microbiology — Posted on 2018-10-03

2670 When sinks become sources: adaptive colonization in asexuals

Lavigne, F.; Martin, G.; Anciaux, Y.; Papaix, J.; Roques, L.

10.1101/433235 — evolutionary biology — Posted on 2018-10-03

2671 Prospective randomized controlled study directly comparing tadalafil and tamsulosin for male patients with lower urinary tract symptoms.

Takeuchi, T.; Toyokawa, S.; Okuno, Y.; Ishida, N.; Yamagoe, M.; Zaitsu, M.; MIkami, K.

10.1101/404566 — clinical trials — Posted on 2018-10-03

2672 Simultaneous multi-area recordings suggest a novel hypothesis about how attention improves performance

Ruff, D. A.; Cohen, M. R.

10.1101/372888 — neuroscience — Posted on 2018-10-03

2673 Resource limitation modulates the fate of dissimilated nitrogen in a dual-pathway Actinobacterium

Vuono, D. C.; Read, R. W.; Hemp, J.; Sullivan, B. W.; Arnone, J. A.; Neveux, I.; Blank, B.; Staub, C.; Loney, E.; Miceli, D.; Winkler, M.; Chakraborty, R.; Stahl, D. A.; Grzymski, J. J.

10.1101/364331 — microbiology — Posted on 2018-10-03

2674 Crystal structures reveal that Lewis-x and fucose bind to secondary cholera toxin binding site - in contrast to fucosyl-GM1

Heim, J. B.; Hodnik, V.; Heggelund, J. E.; Anderluh, G.; Krengel, U.

10.1101/431130 — biochemistry — Posted on 2018-10-03

2675 Metastable brain waves

Roberts, J. A.; Gollo, L. L.; Abeysuriya, R.; Roberts, G.; Mitchell, P. B.; Woolrich, M. W.; Breakspear, M.

10.1101/347054 — neuroscience — Posted on 2018-10-03

2676 Dynamic representations of behaviourally relevant features support rapid face processing in the human ventral visual stream

Dima, D. C.; Singh, K. D.

10.1101/394916 — neuroscience — Posted on 2018-10-03

2677 A General Framework for Variable Selection in Linear Mixed Models with Applications to Genetic Studies with Structured Populations

Bhatnagar, S. R.; Oualkacha, K.; Yang, Y.; Forest, M.; Greenwood, C. M.

10.1101/408484 — bioinformatics — Posted on 2018-10-03

2678 Stochastic rank aggregation for the identification of functional neuromarkers

Galdi, P.; Fratello, M.; Trojsi, F.; Russo, A.; Tedeschi, G.; Tagliaferri, R.; Esposito, F.

10.1101/329383 — neuroscience — Posted on 2018-10-03

2679 Human back-tracking behaviour is associated with suppression of default-mode region activity and enhanced dorsal anterior cingulate activity

Javadi, A. H.; Patai, E. Z.; Marin-Garcia, E.; Margois, A.; Tan, H.-R.; Kumaran, D.; Nardini, M.; Penny, W.; Duzel, E.; Dayan, P.; Spiers, H. J.

10.1101/362319 — neuroscience — Posted on 2018-10-03

2680 Spatiotemporal Analysis of Category and Target-related Information Processing in the Brain during Object Detection

Karimi-Rouzbahani, H.; Vahab, E.; Ebrahimpour, R.; Menhaj, M. B.

10.1101/361642 — neuroscience — Posted on 2018-10-03

2681 Identification of the bacterial biosynthetic gene clusters of the oral microbiome illuminates the unexplored social language of bacteria during health and disease

Aleti, G.; Baker, J. L.; Tang, X.; Alvarez, R.; Dinis, M.; Tran, N. C.; Melnik, A. V.; Zhong, C.; Ernst, M.; Dorrestein, P. C.; Edlund, A.

10.1101/431510 — microbiology — Posted on 2018-10-03

2682 Unveiling the molecular basis of disease co-occurrence: towards personalized comorbidity profiles

Sanchez-Valle, J.; Tejero, H.; Fernandez, J. M.; Juan, D.; Capella, S.; Al-Shahrour, F.; Tabares-Seisdedos, R.; Pancaldi, V.; Valencia, A.

10.1101/431312 — bioinformatics — Posted on 2018-10-03

2683 RNA polymerases display collaborative and antagonistic group behaviors over long distances through DNA supercoiling

Kim, S.; Beltran, B.; Irnov, I.; Jacobs-Wagner, C.

10.1101/433698 — microbiology — Posted on 2018-10-03

2684 In silico results of κ-Opioid receptor antagonists as ligands for the second bromodomain of the Pleckstrin Homology Domain Interacting Protein

El Assal, L. R. P.

10.1101/432468 — bioinformatics — Posted on 2018-10-03

2685 Generative Modeling of Multi-mapping Reads with mHi-C Advances Analysis of High Throughput Genome-wide Conformation Capture Studies

Zheng, Y.; Ay, F.; Keles, S.

10.1101/301705 — bioinformatics — Posted on 2018-10-03

2686 An unsupervised deep learning framework with variational autoencoders for genome-wide DNA methylation analysis and biologic feature extraction applied to breast cancer

Titus, A. J.; Wilkins, O. M.; Bobak, C. A.; Christensen, B. C.

10.1101/433763 — bioinformatics — Posted on 2018-10-03

2687 Absolute pitch can be learned by some adults

Van Hedger, S. C.; Heald, S. L. M.; Nusbaum, H. C.

10.1101/325050 — animal behavior and cognition — Posted on 2018-10-03

2688 Schlafen 11 Restricts Flavivirus Replication

Valdez, F.; Salvador, J.; Palermo, P. M.; Mohl, J. E.; Hanley, K. A.; Watts, D.; Llano, M.

10.1101/434563 — microbiology — Posted on 2018-10-03

2689 Bioluminscent Mycobacterium ulcerans, a tool to study host-pathogen interactions in a murine tail model of Buruli ulcer

Omansen, T. F.; Marcsisin, R. A.; Chua, B. Y.; Zeng, W.; Jackson, D. C.; Porter, J. L.; Stienstra, Y.; van der Werf, T. S.; Stinear, T. P.

10.1101/434506 — microbiology — Posted on 2018-10-03

2690 Erythrocyte indices, anaemia levels and types in Kenyan injection and non-injection substance users

Tom, W.; Khazalwa{superscript 1}, E. M.; Mulama, D. H.; Budambula?, V.

10.1101/434365 — pathology — Posted on 2018-10-03

2691 Comprehensive proteomic and metabolomic profiling of mcr-1 mediated colistin resistance in Escherichia coli

Li, H.; Wang, Y.; Meng, Q.; Wang, Y.; Xia, G.; Xia, X.; Shen, J.

10.1101/434548 — pharmacology and toxicology — Posted on 2018-10-03

2692 Analysis of contributory gut microbiota and lauric acid against necrotic enteritis in Clostridium perfringens and Eimeria side-by-side challenge model

Wang, C.; Yang, W.-Y.; Lee, Y.; Lu, H.; Chou, C.-H.; Wen-Yuan Yang, Yuejia Lee, Hsinyi Lu, Chung-Hsi Chou,

10.1101/434449 — microbiology — Posted on 2018-10-03

2693 An anti-Gn glycoprotein antibody from a convalescent patient potently inhibits the infection of severe fever with thrombocytopenia syndrome virus

Kim, K. H.; Kim, J.; Ko, M.; Chun, J. Y.; Kim, H.; Kim, S.; Min, J.-Y.; Park, W. B.; Oh, M.-d.; Chung, J.

10.1101/434530 — biochemistry — Posted on 2018-10-03

2694 Risk Factors Associated with Dengue Virus Infection in Guangdong Province: a Community-based Case-control Study

Liu, J.; Tian, X.; Deng, Y.; Du, Z.; Liang, T.; Hao, Y.; zhang, d.; Jundi Liu, Xiaolu Tian, Yu Deng, Zhicheng Du, Tianzhu Liang, Yuantao Hao and Dingmei Zhang,

10.1101/434472 — scientific communication and education — Posted on 2018-10-03

2695 An 8-Week Resistance Training Protocol Is Effective In Adapting Quadriceps But Not Patellar Tendon Shear Modulus Measured By Supersonic Shearwave Imaging

Mannarino, P.; Matta, T.; Oliveira, L.

10.1101/434423 — physiology — Posted on 2018-10-03

2696 Arrhythmia Mechanisms and Spontaneous Calcium Release: I - Multi-scale Modelling Approaches

Colman, M. A.

10.1101/434464 — physiology — Posted on 2018-10-03

2697 Arrhythmia Mechanisms and Spontaneous Calcium Release: II - From Calcium Spark to Re-entry and Back

Colman, M. A.

10.1101/434456 — physiology — Posted on 2018-10-03

2698 Within-subject consistency of paired associative stimulation as assessed by linear mixed models.

Ottenhoff, M. J.; Fani, L.; Erler, N. S.; Castricum, J.; Obdam, I. F.; van der Vaart, T.; Kushner, S. A.; de Wit, M.-C. Y.; Elgersma, Y.; Tulen, J.

10.1101/434431 — neuroscience — Posted on 2018-10-03

2699 How green are residential areas? An analysis of community greening emerging multi-source geo-data

chen, y.

10.1101/434381 — ecology — Posted on 2018-10-03

2700 Phosphorylation of the alpha2 glycine receptor induces an extracellular conformational change and slows the rise and decay rates of glycinergic synaptic currents

Islam, S.; Chen, X.; Estrada-Mondragon, A.; Lynch, J.

10.1101/434357 — neuroscience — Posted on 2018-10-03

2701 Different temporal windows for contextual fear memory destabilisation in the amygdala and hippocampus

Lee, J.; Amorim, F. E.; Cassini, L. F.; Amaral, O. B.

10.1101/434407 — neuroscience — Posted on 2018-10-03

2702 Reductions in prefrontal activation predict off-topic utterances during speech production

Hoffman, P.

10.1101/433185 — neuroscience — Posted on 2018-10-03

2703 Type 1 Diabetes: an Association Between Autoimmunity the Dynamics of Gut Amyloid-producing E. coli and Their Phages

Tetz, G.; Brown, S. M.; Hao, Y.; Tetz, V.

10.1101/433110 — microbiology — Posted on 2018-10-03

2704 Tissue Fluidity Promotes Epithelial Wound Healing

Tetley, R. J.; Staddon, M. F.; Banerjee, S.; Mao, Y.

10.1101/433557 — biophysics — Posted on 2018-10-03

2705 NetTCR: sequence-based prediction of TCR binding to peptide-MHC complexes using convolutional neural networks

Jurtz, V. I.; Jessen, L. E.; Bentzen, A. K.; Jespersen, M. C.; MAHAJAN, S.; Vita, R.; Jensen, K. K.; Marcatili, P.; Hadrup, S. R.; Peters, B.; Nielsen, M.

10.1101/433706 — bioinformatics — Posted on 2018-10-03

2706 MiniScrub: de novo long read scrubbing using approximate alignment and deep learning

LaPierre, N.; Egan, R.; Wang, W.; Wang, Z.

10.1101/433573 — bioinformatics — Posted on 2018-10-03

2707 Improved DNA based storage capacity and fidelity using composite DNA letters

Anavy, L.; Vaknin, I.; Atar, O.; Amit, R.; Yakhini, Z.

10.1101/433524 — synthetic biology — Posted on 2018-10-03

2708 Evidence for the Scarr-Rowe effect on genetic expressivity in a large US sample.

Woodley of Menie, M.; Pallesen, J.; Sarraf, M. A.

10.1101/429860 — genomics — Posted on 2018-10-03

2709 Behavioural and neural signatures of perceptual evidence accumulation are modulated by pupil-linked arousal

van Kempen, J.; Loughnane, G. M.; Newman, D. P.; Kelly, S. P.; Thiele, A.; O'Connell, R. G.; Bellgrove, M. A.

10.1101/433060 — neuroscience — Posted on 2018-10-03

2710 Genetic and behavioural requirements for structural brain plasticity

Vousden, D. A.; Friesen, A.; Wen, X.; Qiu, L. R.; O'Toole, N.; Darwin, B.; Spencer Noakes, L.; Allemang-Grand, R.; Diorio, J.; Frankland, P.; Josselyn, S.; Nieman, B. J.; Meaney, M.; Zhang, T.-y.; Lerch, J. P.

10.1101/431999 — neuroscience — Posted on 2018-10-03

2711 The time course of different surround suppression mechanisms

Schallmo, M.-P.; Kale, A. M.; Murray, S. O.

10.1101/432773 — neuroscience — Posted on 2018-10-03

2712 Genetic risk for coronary heart disease alters the influence of Alzheimer’s genetic risk on mild cognitive impairment

Elman, J. A.; Panizzon, M. S.; Logue, M. W.; Gillespie, N. A.; Neale, M. C.; Reynolds, C. A.; Gustavson, D. E.; Andreassen, O. A.; Dale, A. M.; Franz, C. E.; Lyons, M. J.; Kremen, W. S.

10.1101/432443 — genomics — Posted on 2018-10-03

2713 Multi-objective formulation of MSA for phylogeny estimation (Do phylogeny-aware measures guide towards better phylogenetic tree?)

Nayeem, M. A.; Bayzid, M. S.; Rahman, A. H.; Shahriyar, R.; Rahman, M. S.

10.1101/418095 — bioinformatics — Posted on 2018-10-03

2714 Velocity estimation in reinforcement learning

Velazquez Vargas, C. A.; Villarreal, M.; Bouzas Riano, A.

10.1101/432492 — animal behavior and cognition — Posted on 2018-10-03

2715 Synaptic properties and network state-dependent recruitment of VIP-expressing interneuron-specific interneurons in the CA1 hippocampus

Luo, X.; Guet-McCreight, A.; Francavilla, R.; Villette, V.; Skinner, F. K.; Topolnik, L.

10.1101/433136 — neuroscience — Posted on 2018-10-03

2716 Kinetic Model of Translational Autoregulation

Tyng, V.; Kellman, M. E.

10.1101/432658 — systems biology — Posted on 2018-10-03

2717 Ancient origin and complex evolution of porcine endogenous retroviruses

Chen, Y.; Chen, M.; Duan, X.; Cui, J.

10.1101/431858 — microbiology — Posted on 2018-10-03

2718 Visualization and regulation of translocons in Yersinia type III protein secretion machines during host cell infection

Nauth, T.; Huschka, F.; Schweizer, M.; Bosse, J. B.; Diepold, A.; Failla, A. V.; Steffen, A.; Stradal, T.; Wolters, M.; Aepfelbacher, M.

10.1101/431908 — microbiology — Posted on 2018-10-03

2719 Length asymmetry and heterozygosity strongly influences the evolution of poly-A microsatellites at meiotic recombination hotspots

Heissl, A.; Betancourt, A. J.; Hermann, P.; Povysil, G.; Arbeithuber, B.; Futschik, A.; Ebner, T.; Tiemann-Boege, I.

10.1101/431841 — evolutionary biology — Posted on 2018-10-03

2720 rCASC: reproducible Classification Analysis of Single Cell sequencing data

Alessandri, L.; Beccuti, M.; Arigoni, M.; Olivero, M.; Romano, G.; De Libero, G.; Pace, L.; Cordero, F.; Calogero, R.

10.1101/430967 — bioinformatics — Posted on 2018-10-03

2721 Do Cells use Passwords? Do they Encrypt Information?

Root, A.

10.1101/432120 — systems biology — Posted on 2018-10-03

2722 Single-cell in situ transcriptomic map of astrocyte cortical layer diversity

Bayraktar, O. A.; Bartels, T.; Polioudakis, D.; Holmqvist, S.; Haim, L. B.; Young, A. M. H.; Prakash, K.; Brown, A.; Paredes, M. F.; Kawaguchi, R.; Stockley, J.; Sabeur, K.; Chang, S. M.; Huang, E.; Hutchinson, P.; Ullian, E. M.; Geschwind, D. H.; Coppola, G.; Rowitch, D. H.

10.1101/432104 — neuroscience — Posted on 2018-10-03

2723 Alexidine dihydrochloride has broad spectrum activities against diverse fungal pathogens

Mamouei, Z.; Alqarihi, A.; Singh, S.; Xu, S.; Mansour, M.; Ibrahim, A. S.; Uppuluri, P.

10.1101/429944 — microbiology — Posted on 2018-10-03

2724 In vivo selection for corrected β-globin alleles after CRISPR/Cas9 editing in human sickle hematopoietic stem cells enhances therapeutic potential

10.1101/432716 — genetics — Posted on 2018-10-03

2725 Temperature and photoperiod influence survival and biomarkers of senescence in common woodlouse

DEPEUX, C.; SAMBA-LOUAKA, A.; BRAQUART-VARNIER, C.; MOREAU, J.; LEMAITRE, J.-F.; LAVERRE, T.; PAULHAC, H.; DECHAUME-MONCHARMONT, F.-X.; GAILLARD, J.-M.; BELTRAN-BECH, S.

10.1101/433011 — evolutionary biology — Posted on 2018-10-03

2726 Male and female bees show large differences in floral preference

Roswell, M.; Dushoff, J.; Winfree, R.

10.1101/432518 — ecology — Posted on 2018-10-03

2727 Right-sided brain lesions predominate among patients with lesional mania: evidence from a systematic review and pooled lesion analysis

Barahona-Correa, J. B.; Cotovio, G.; Costa, R. M.; Ribeiro, R.; Velosa, A.; Cruz e Silva, V.; Sperber, C.; Karnath, H.-O.; Senova, S.; Oliveira-Maia, A. J.

10.1101/433292 — neuroscience — Posted on 2018-10-03

2728 Multiple modes of PRC2 inhibition elicit global chromatin alterations in H3K27M pediatric glioma

Stafford, J.; Lee, C.-H.; Voigt, P.; Descostes, N.; Saldana-Meyer, R.; Yu, J.-R.; Leroy, G.; Oksuz, O.; Chapman, J.; Suarez, F.; Modrek, A.; Bayin, N. S.; Placantonakis, D.; Karajannis, M.; Snuderl, M.; Ueberheide, B.; Reinberg, D.

10.1101/432781 — molecular biology — Posted on 2018-10-03

2729 Community structure of phototrophic co-cultures from extreme environments

Brooke, C. G.; Connolly, M. P.; Garcia, J. A.; Harmon-Smith, M.; Shapiro, N.; Hawley, E.; Barton, M.; Tringe, S. G.; Glavina del Rio, T.; Culley, D. E.; Castenholtz, R.; Hess, M.

10.1101/427211 — microbiology — Posted on 2018-10-03

2730 Hox genes mediate the escalation of sexually antagonistic traits in water striders

Crumiere, A. J. J.; Khila, A.

10.1101/425504 — evolutionary biology — Posted on 2018-10-03

2731 Variant pathogenic prediction models VSRFM and VSRFM-s, the importance of splicing and allele frequency.

Cabrera Alarcon, J. L.; Garcia Martinez, J.

10.1101/430975 — bioinformatics — Posted on 2018-10-03

2732 In silico results of κ-Opioid receptor antagonists as ligands for the second bromodomain of the Pleckstrin Homology Domain Interacting Protein

El Assal, L. R. P.

10.1101/432468 — bioinformatics — Posted on 2018-10-03

2733 Accurate peptide fragmentation predictions allow data driven approaches to replace and improve upon proteomics search engine scoring functions

C. Silva, A. S.; Martens, L.; Degroeve, S.

10.1101/428805 — bioinformatics — Posted on 2018-10-03

2734 GeneWeld: a method for efficient targeted integration directed by short homology

10.1101/431627 — genetics — Posted on 2018-10-03

2735 Scale-invariant geometric data analysis (SIGDA) provides robust, detailed visualizations of human ancestry specific to individuals and populations

Robinson, M.; Zimmer, A.; Farrah, T.; Mauldin, D. E.; Price, N. D.; Hood, L. E.; Glusman, G.

10.1101/431585 — bioinformatics — Posted on 2018-10-03

2736 A novel localization based biosensor, SEDAR, visualizes spatio-temporal dynamics of activated Ras in endogenous Drosophila tissues

Changede, R.

10.1101/432997 — developmental biology — Posted on 2018-10-02

2737 Layer-specific ultra-high field 7T fMRI showing that threat anticipation is mediated by the pulvinar input to the superficial layers of primary visual cortex (V1)

Koizumi, A.; Zhan, M.; Ban, H.; Kida, I.; de Martino, F.; de Gelder, B.; Amano, K.

10.1101/431270 — neuroscience — Posted on 2018-10-02

2738 Cooperation of partially-transformed clones: the invisible force behind the early stages of carcinogenesis

Esposito, A.

10.1101/431478 — cancer biology — Posted on 2018-10-02

2739 Checkpoint non-fidelity induces a complex landscape of lineage fitness after DNA damage

Campbell, C. J.; Venkitaraman, A. R.; Esposito, A.

10.1101/431486 — cancer biology — Posted on 2018-10-02

2740 Enhancing biochemical resolution by hyper-dimensional imaging microscopy

Esposito, A.; Venkitaraman, A. R.

10.1101/431452 — biophysics — Posted on 2018-10-02

2741 Toward single particle reconstruction without particle picking: Breaking the detection limit

Bendory, T.; Boumal, N.; Leeb, W.; Levin, E.; Singer, A.

10.1101/431080 — molecular biology — Posted on 2018-10-02

2742 Multiplexed biochemical imaging reveals caspase activation patterns underlying single cell fate

Fries, M. W.; Haas, K. T.; Ber, S.; Saganty, J.; Richardson, E. K.; Venkitaraman, A. R.; Esposito, A.

10.1101/427237 — cancer biology — Posted on 2018-10-02

2743 Infiltration of CD8+ T cells into tumor-cell clusters in Triple Negative Breast Cancer

Li, X.; Gruosso, T.; Zuo, D.; Omeroglu, A.; Meterissian, S.; Guiot, M.-C.; Salazar, A.; Park, M.; Levine, H.

10.1101/430413 — cancer biology — Posted on 2018-10-02

2744 Deep learning light field microscopy for rapid four-dimensional imaging of behaving animals

Fei, P.; Wang, Z.; Zhang, H.; Yang, Y.; Li, Y.; Gao, S.

10.1101/432807 — biophysics — Posted on 2018-10-02

2745 Strengthening of the efferent olivocochlear system leads to synaptic dysfunction and tonotopy disruption of a central auditory nucleus

Di Guilmi, M. N.; Boero, L. E.; Castagna, V. C.; Rodriguez-Contreras, A.; Wedemeyer, C.; Gomez-Casati, M. E.; Elgoyhen, A. B.

10.1101/433581 — neuroscience — Posted on 2018-10-02

2746 GWAS-driven Pathway Analyses and Functional Validation Suggest GLIS1 as a Susceptibility Gene for Mitral Valve Prolapse

Yu, M.; Georges, A.; Tucker, N. R.; Kyryachenko, S.; Toomer, K.; Schott, J.-J.; Delling, F. N.; Ellinor, P. T.; Levine, R. A.; Slaugenhaupt, S. A.; Hagege, A. A.; Dina, C.; Jeunemaitre, X.; Milan, D. J.; Norris, R. A.; Bouatia-Naji, N.

10.1101/433268 — genetics — Posted on 2018-10-02

2747 An unsupervised deep learning framework with variational autoencoders for genome-wide DNA methylation analysis and biologic feature extraction applied to breast cancer

Titus, A. J.; Wilkins, O. M.; Bobak, C. A.; Chrisetensen, B. C.

10.1101/433763 — bioinformatics — Posted on 2018-10-02

2748 Mathematical modelling of serine integrase - mediated gene assembly

Pokhilko, A.; Kane, S.; Stark, M. W.; Colloms, S.

10.1101/433441 — synthetic biology — Posted on 2018-10-02

2749 Discrete stepping and nonlinear ramping dynamics underlie spiking responses of LIP neurons during decision-making

Zoltowski, D. M.; Latimer, K. W.; Yates, J. L.; Huk, A. C.; Pillow, J. W.

10.1101/433458 — neuroscience — Posted on 2018-10-02

2750 Heading direction with respect to a reference point modulates place-cell activity

Jercog, P. E.; Ahmadian, Y.; Woodruff, C.; Deb-Sen, R.; Abbott, L. F.; Kandel, E. R.

10.1101/433516 — neuroscience — Posted on 2018-10-02

2751 A target enrichment bait set for studying relationships among ostariophysan fishes

Faircloth, B. C.; Alda, F.; Hoekzema, K.; Burns, M. D.; Oliveira, C.; Albert, J. S.; Melo, B. F.; Ochoa, L. E.; Roxo, F. F.; Chakrabarty, P.; Sidlauskas, B. L.; Alfaro, M. E.

10.1101/432583 — evolutionary biology — Posted on 2018-10-02

2752 Response outcomes gate the impact of expectations on perceptual decisions

Hermoso-Mendizabal, A.; Hyafil, A.; Rueda-Orozco, P. E.; Jaramillo, S.; Robbe, D.; de la Rocha, J.

10.1101/433409 — neuroscience — Posted on 2018-10-02

2753 Urgency reveals an attentional vortex during antisaccade performance

Salinas, E.; Steinberg, B. R.; Sussman, L. A.; Fry, S. M.; Hauser, C. K.; Anderson, D. D.; Stanford, T. R.

10.1101/433615 — neuroscience — Posted on 2018-10-02

2754 Morphology, geographic distribution, and host preferences are poor predictors of phylogenetic relatedness in the mistletoe genus Viscum L.

Maul, K.; Krug, M.; Nickrent, D. L.; Mueller, K. F.; Quandt, D.; Wicke, S.

10.1101/433359 — evolutionary biology — Posted on 2018-10-02

2755 Revealing the Complexities of Metabarcoding with a Diverse Arthropod Mock Community

Braukmann, T. W.; Ivanova, N. V.; Prosser, S. W.; Elbrecht, V.; Steinke, D.; Ratnasingham, S.; deWaard, J. R.; Sones, J. E.; Zakhariv, E. V.; Hebert, P. D.

10.1101/433607 — ecology — Posted on 2018-10-02

2756 Automatic local resolution-based sharpening of cryo-EM maps.

Ramirez-Aportela, E.; Vilas, J. L.; Melero, R.; Conesa, P.; Martinez, M.; Maluenda, D.; Mota, J.; Jimenez, A.; Vargas, J.; Marabini, R.; Carazo, J. M.; Sorzano, C. O. S.

10.1101/433284 — biophysics — Posted on 2018-10-02

2757 Factors Affecting Electroconvulsive Therapy Ictal Outcomes: Duration and Postictal Suppression

Ingram, W. M.; Weston, C.; Lu, W. D.; Hodge, C. B.; Poler, S. M.; Nahi, F. T.; Larson, S.

10.1101/433789 — neuroscience — Posted on 2018-10-02

2758 Explicit instruction differentially affects subcomponents of procedural learning and consolidation

Horvath, K.; Torok, C.; Pesthy, O.; Nemeth, D.; Janacsek, K.

10.1101/433243 — neuroscience — Posted on 2018-10-02

2759 A post-decisional neural marker of confidence predicts information-seeking

Desender, K.; Murphy, P. R.; Boldt, A.; Verguts, T.; Yeung, N.

10.1101/433276 — neuroscience — Posted on 2018-10-02

2760 Dorsal Hippocampus not always necessary in a Radial Arm Maze Delayed Win-shift Task

Layfield, D.; Sidell, N.; Abdullahi, A.; Newman, E. L.

10.1101/433565 — neuroscience — Posted on 2018-10-02

2761 Histone deacetylase activity is required for Botrylloides leachii whole body regeneration.

Zondag, L.; Clarke, R.; Wilson, M.

10.1101/433854 — molecular biology — Posted on 2018-10-02

2762 Identifying novel subtypes of irritability using a developmental genetic approach

Riglin, L.; Eyre, O.; Thapar, A. K.; Stringaris, A.; Leibenluft, E.; Pine, D.; Tilling, K.; Davey Smith, G.; O'Donovan, M. C.; Thapar, A.

10.1101/433342 — genetics — Posted on 2018-10-02

2763 Membrane-cytoskeleton mechanical feedback mediated by myosin-I controls phagocytic efficiency

Barger, S. R.; Reilly, N. S.; Shutova, M. S.; Li, Q.; Maiuri, P.; Mooseker, M. S.; Flavell, R. A.; Svitkina, T.; Oakes, P. W.; Krendel, M.; Gauthier, N.

10.1101/433631 — cell biology — Posted on 2018-10-02

2764 FGFR4 phosphorylates MST1 to confer breast cancer cells resistance to MST1/2-dependent apoptosis

Turunen, S. P.; von Nandelstadh, P.; Öhman, T.; Gucciardo, E.; Martins, B.; Rantanen, V.; Li, H.; Höpfner, K.; Varjosalo, M.; Lehti, K.

10.1101/431783 — cancer biology — Posted on 2018-10-02

2765 CSNAP, the smallest CSN subunit, modulates proteostasis through cullin-RING ubiquitin ligases

Füzesi-Levi, M. G.; Enchev, R. I.; Ben-Nissan, G.; Levin, Y.; Kupervaser, M.; Friedlander, G.; Salame, T. M.; Nevo, R.; Peter, M.; Sharon, M.

10.1101/433532 — biochemistry — Posted on 2018-10-02

2766 Rubsicolins are naturally occurring G-protein-biased delta opioid receptor peptides

Cassell, R. J.; Mores, K. L.; Zerfas, B. L.; Mahmoud, A. H.; Lill, M. A.; Trader, D. J.; van Rijn, R. M.

10.1101/433805 — pharmacology and toxicology — Posted on 2018-10-02

2767 Pervasiveness of exoribonuclease-resistant RNAs in plant viruses suggests new roles for these conserved RNA structures

Steckelberg, A.-L.; Vicens, Q.; Kieft, J. S.

10.1101/433672 — microbiology — Posted on 2018-10-02

2768 Application of long read sequencing to determine expressed antigen diversity in Trypanosoma brucei infections

Jayaraman, S.; Harris, C.; Paxton, E.; Donachie, A.-M.; Vaikkinen, H.; McCulloch, R.; Hall, J. P.; Kenny, J.; Lenzi, L.; Hertz-Fowler, C.; Cobbold, C.; Reeve, R.; Michoel, T.; Morrison, L.

10.1101/432245 — genomics — Posted on 2018-10-02

2769 GREB1 amplifies androgen receptor output in prostate cancer and contributes to antiandrogen resistance

Sawyers, C. L.; Lee, E.; Wongvipat, J.; Choi, D.; Wang, P.; Zheng, D.; Watson, P. A.; Gopalan, A.

10.1101/433755 — cancer biology — Posted on 2018-10-02

2770 Probing the flavin transfer mechanism in alkanesulfonate monooxygenase system

Dayal, P.; Ellis, H.

10.1101/433839 — biochemistry — Posted on 2018-10-02

2771 Forensic STR profiling using Oxford Nanopore Technologies’ MinION sequencer

Cornelis, S.; Willems, S.; Van Neste, C.; Tytgat, O.; Weymaere, J.; Vander Plaetsen, A.-S.; Deforce, D.; Van Nieuwerburgh, F.

10.1101/433151 — genomics — Posted on 2018-10-02

2772 RNA polymerases display collaborative and antagonistic group behaviors over long distances through DNA supercoiling

Kim, S.; Beltran, B.; Irnov, I.; Jacobs-Wagner, C.

10.1101/433698 — microbiology — Posted on 2018-10-02

2773 Fast Bayesian fine-mapping of 35 production, reproduction and body conformation traits with imputed sequences of 27K Holstein bulls

Jiang, J.; Cole, J. B.; Da, Y.; VanRaden, P. M.; Ma, L.

10.1101/428227 — genetics — Posted on 2018-10-02

2774 RNA polymerase I transcription fidelity, speed and processivity depend on the interplay of its lobe binding subunits

Tschochner, H.; Merkl, P. E.; Pilsl, M.; Fremter, T.; Längst, G.; Milkereit, P.; Griesenbeck, J.

10.1101/433375 — biochemistry — Posted on 2018-10-02

2775 Identification of the bacterial biosynthetic gene clusters of the oral microbiome illuminates the unexplored social language of bacteria during health and disease

Aleti, G.; Baker, J. L.; Tang, X.; Alvarez, R.; Boltelho, M.; Tran, N. C.; Melnik, A. V.; Zhong, C.; Ernst, M.; Dorrestein, P. C.; Edlund, A.

10.1101/431510 — microbiology — Posted on 2018-10-02

2776 Quantifying miscarriage sex bias in England and Wales, 1993-2017

Mulley, J. F.

10.1101/418186 — epidemiology — Posted on 2018-10-02

2777 Spatial dynamics within and between brain functional domains: A hierarchical approach to study time-varying brain function

Iraji, A.; Fu, Z.; Damarajua, E.; DeRamus, T.; Lewis, N.; Bustillo, J. R.; Lenroot, R. K.; Belger, A.; Ford, J. M.; McEwen, S.; Mathalon, D. H.; Mueller, B. A.; Pearlson, G. D.; Potkin, S. G.; Preda, A.; Turner, J. A.; Vaidya, J. G.; van Erp, T. G. M.; Calhoun, V. D.

10.1101/391094 — neuroscience — Posted on 2018-10-02

2778 Wilms tumor 1 promotes memory flexibility

Mariottini, C.; Munari, L.; Gunzel, E.; Seco, J.; Tzavaras, N.; Hansen, J.; Stern, S.; Gao, V.; Aleyasin, H.; Azeloglu, E.; Hodes, G.; Russo, S.; Huff, V.; Birtwistle, M.; Blitzer, R.; Alberini, C.; Iyengar, R.

10.1101/101360 — neuroscience — Posted on 2018-10-02

2779 Metabolic Diversity within the Globally Abundant Marine Group II Euryarchaea Offers Insight into Ecological Patterns

Tully, B. J.

10.1101/349548 — microbiology — Posted on 2018-10-02

2780 Structural and proteomic changes in viable but non-culturable Vibrio cholerae

Brenzinger, S.; van der Aart, L. T.; van Wezel, G. P.; Lacroix, J.-M.; Glatter, T.; Briegel, A.

10.1101/433326 — microbiology — Posted on 2018-10-02

2781 Efficient generation of endogenous fluorescent reporters by Nested CRISPR in Caenorhabditis elegans

Vicencio, J.; Martinez-Fernandez, C.; Xerrat, X.; Ceron, J.

10.1101/423970 — genetics — Posted on 2018-10-02

2782 G-Protein signaling increases germline stem cell activity in Drosophila males in response to multiple rounds of mating

Malpe, M.; McSwain, L. F.; Ng, C.; Kudyba, K.; Nicholson, J.; Brady, M.; Parrott, B. B.; Choksi, V.; Hudson, A. G.; Schulz, C.

10.1101/433623 — developmental biology — Posted on 2018-10-02

2783 Epigenetic silencing of miRNA-338-5p and miRNA-421 drives SPINK1-positive prostate cancer.

Bhatia, V.; Yadav, A.; Tiwari, R.; Nigam, S.; Goel, S.; Carskadon, S.; Gupta, N.; Goel, A.; Palanisamy, N.; Ateeq, B.

10.1101/376277 — cancer biology — Posted on 2018-10-02

2784 Effect of gender of new-born, antenatal care and postnatal care on breastfeeding practices in Ethiopia: Evidence from systematic review and meta-analysis of national studies

Habtewold, T. D.; Sharew, N. T.; Alemu, S. M.

10.1101/405605 — epidemiology — Posted on 2018-10-02

2785 Morphogenetic processes as data: Quantitative structure in the Drosophila eye imaginal disc

Alicea, B.; Portegys, T. E.; Gordon, D.; Gordon, R.

10.1101/395640 — developmental biology — Posted on 2018-10-02

2786 Structure of the large extracellular loop of FtsX and its interaction with the essential peptidoglycan hydrolase PcsB in Streptococcus pneumoniae

Rued, B. E.; Alcorlo, M.; Edmonds, K. A.; Martinez-Caballero, S.; Straume, D.; Fu, Y.; Bruce, K. E.; Wu, H.; Havarstein, L. S.; Hermoso, J. A.; Winkler, M. E.; Giedroc, D. P.

10.1101/432344 — microbiology — Posted on 2018-10-02

2787 Quiescent cells actively replenish CENP-A nucleosomes to maintain centromere identity and proliferative potential

Swartz, S. Z.; McKay, L. S.; Su, K.-C.; Padeganeh, A.; Maddox, P. S.; Knouse, K. A.; Cheeseman, I.

10.1101/433391 — cell biology — Posted on 2018-10-02

2788 Pacific geoduck (Panopea generosa) resilience to natural pH variation

Spencer, L. H.; Horwith, M.; Lowe, A. T.; Venkataraman, Y. R.; Timmins-Schiffman, E.; Nunn, B. L.; Roberts, S. B.

10.1101/432542 — physiology — Posted on 2018-10-02

2789 Dengue antigenic relationships predict evolutionary dynamics

Bell, S. M.; Katzelnick, L.; Bedford, T.

10.1101/432054 — evolutionary biology — Posted on 2018-10-02

2790 Integrin-mediated attachment of the blastoderm to the vitelline envelope impacts gastrulation of insects

Muenster, S.; Jain, A.; Mietke, A.; Pavlopoulos, A.; Grill, S. W.; Tomancak, P.

10.1101/421701 — developmental biology — Posted on 2018-10-02

2791 Individual Differences in the Pattern of Coordination in Brittle Stars with Five and Six Arms

Wakita, D.; Hayase, Y.; Aonuma, H.

10.1101/340471 — physiology — Posted on 2018-10-02

2792 Efficient generation of endogenous fluorescent reporters by Nested CRISPR in Caenorhabditis elegans

Vicencio, J.; Martinez-Fernandez, C.; Xerrat, X.; Ceroon, J.

10.1101/423970 — genetics — Posted on 2018-10-02

2793 Leveraging brain cortex-derived molecular data to elucidate epigenetic and transcriptomic drivers of neurological function and disease

Hatcher, C.; Relton, C. L.; Gaunt, T. R.; Richardson, T. G.

10.1101/429134 — genetics — Posted on 2018-10-02

2794 Effective Variations of related Physicochemical Properties of Nucleotides Leading to Amino Acids for Characterizing Genes and Proteins

Sengupta, A.; Pal Choudhury, P.

10.1101/332171 — systems biology — Posted on 2018-10-02

2795 The fate of hippocampal synapses depends on the sequence of plasticity-inducing events

Wiegert, J. S.; Pulin, M.; Gee, C. E.; Oertner, T. G.

10.1101/326942 — neuroscience — Posted on 2018-10-02

2796 In vivo characterisation of fluorescent proteins in budding yeast.

Botman, D.; de Groot, D. H.; Schmidt, P.; Goedhart, J.; Teusink, B.

10.1101/431874 — molecular biology — Posted on 2018-10-02

2797 USP15 participates in HCV propagation through the regulation of viral RNA translation and lipid droplet formation

Kusakabe, S.; Suzuki, T.; Sugiyama, Y.; Haga, S.; Horike, K.; Tokunaga, M.; Hirano, J.; He, Z.; Chen, D. V.; Ishiga, H.; Komoda, Y.; Ono, C.; Fukuhara, T.; Yamamoto, M.; Ikawa, M.; Satoh, T.; Akira, S.; Tanaka, T.; Moriishi, K.; Fukai, M.; Taketomi, A.; Yoshio, S.; Kanto, T.; Suzuki, T.; Okamoto, T.; Matsuura, Y.

10.1101/432930 — microbiology — Posted on 2018-10-02

2798 Molecular mechanisms of gating in the calcium-activated chloride channel bestrophin

Miller, A. N.; Vaisey, G.; Long, S. B.

10.1101/432682 — biochemistry — Posted on 2018-10-02

2799 CyanoGate: A Golden Gate modular cloning suite for engineering cyanobacteria based on the plant MoClo syntax

Vasudevan, R.; Gale, G. A.; Schiavon, A. A.; Puzorjov, A.; Malin, J.; Gillespie, M. D.; Vavitsas, K.; Zulkower, V.; Wang, B.; Howe, C. J.; Lea-Smith, D.; McCormick, A. J.

10.1101/426700 — synthetic biology — Posted on 2018-10-02

2800 Range size dynamics can explain why evolutionarily age and diversification rate correlate with contemporary extinction risk in plants

Tanentzap, A. J.; Igea, J.; Johnston, M. G.; Larcombe, M. J.

10.1101/152215 — evolutionary biology — Posted on 2018-10-02

2801 Coverage and timeliness of vaccination and the validity of routine estimates: Insights from a Vaccine Registry in Kenya

Adetifa, I. M. O.; Karia, B.; Mutuku, A.; Bwanaali, T.; Makumi, A.; Wafula, J.; Chome, M.; Mwatsuma, P.; Bauni, E.; Hammitt, L.; Mataza, C.; Tabu, C.; Kamau, T. N.; Williams, T.; Scott, J. A.

10.1101/427773 — epidemiology — Posted on 2018-10-02

2802 Motor Responses Influence Perceptual Awareness Judgements

Siedlecka, M.; Hobot, J.; Skora, Z.; Paulewicz, B.; Timmermans, B.; Wierzchon, M.

10.1101/283762 — animal behavior and cognition — Posted on 2018-10-02

2803 The nuclear interactome of DYRK1A reveals a functional role in DNA damage repair

Guard, S. E.; Poss, Z. C.; Ebmeier, C. C.; Pagratis, M.; Taatjes, D. J.; Old, W. M.

10.1101/432757 — systems biology — Posted on 2018-10-02

2804 Bacterial competition mediated by siderophore production among the human nasal microbiota

Stubbendieck, R. M.; May, D. S.; Chevrette, M. G.; Temkin, M. I.; Wendt-Pienkowski, E.; Cagnazzo, J.; Carlson, C. M.; Gern, J. E.; Currie, C. R.

10.1101/432948 — microbiology — Posted on 2018-10-02

2805 Herbarium records reveal early flowering in response to warming in the southern hemisphere

Daru, B. H.; Kling, M. M.; Meineke, E. K.; van Wyk, A. E. E.

10.1101/432765 — ecology — Posted on 2018-10-02

2806 HIPPO signaling resolves embryonic cell fate conflicts during establishment of pluripotency in vivo

Frum, T.; Murphy, T.; Ralston, A.

10.1101/316539 — developmental biology — Posted on 2018-10-02

2807 Hetero-oligomeric CPN60 resembles highly symmetric group I chaperonin structure revealed by Cryo-EM

Liu, C.; Zhao, Q.; Zhang, X.; Sommer, F.; Na, T.; Wang, N.; Schroda, M.; Cong, Y.

10.1101/432013 — biochemistry — Posted on 2018-10-02

2808 Altered Gene Regulatory Networks are Associated with the Transition from C3 to Crassulacean Acid Metabolism in Erycina (Oncidiinae: Orchidaceae)

Heyduk, K.; Hwang, M.; Albert, V.; Silvera, K.; Lan, T.; Winter, K.; Leebens-Mack, J.

10.1101/431460 — plant biology — Posted on 2018-10-02

2809 Common and dissociable contributions of alexithymia and autism to domain-specific interoceptive dysregulations - a dimensional neuroimaging approach

Li, J.; Xu, L.; Zheng, X.; Fu, M.; Zhou, F.; Xu, X.; Ma, X.; Li, K.; Keith, K.; Becker, B.

10.1101/432971 — neuroscience — Posted on 2018-10-02

2810 Right hemisphere superiority for executive control of attention

Spagna, A.; Kim, T. H.; Wu, T.; Fan, J.

10.1101/432732 — neuroscience — Posted on 2018-10-02

2811 Viral RNA-dependent RNA polymerase inhibitor 7-deaza-2′-C-methyladenosine prevents death in a mouse model of West Nile virus infection

Eyer, L.; Fojtikova, M.; Nencka, R.; Rudolf, I.; Hubalek, Z.; Ruzek, D.

10.1101/432955 — microbiology — Posted on 2018-10-02

2812 Genetic signatures of human cytomegalovirus variants acquired by seronegative glycoprotein B vaccinees

Nelson, C. S.; Vera Cruz, D.; Su, M.; Xie, G.; Vandergrift, N.; Pass, R.; Forman, M.; Diener-West, M.; Koelle, K.; Arav-Boger, R.; Permar, S. R.

10.1101/432922 — microbiology — Posted on 2018-10-02

2813 Expression of a recombinant high affinity IgG Fc receptor by engineered NK cells as a docking platform for therapeutic mAbs to target cancer cells

Snyder, K.; Hullsiek, R.; Mishra, H.; Mendez, D.; Li, Y.; Rogich, A.; Kaufman, D.; Wu, J.; Walcheck, B.

10.1101/432849 — immunology — Posted on 2018-10-02

2814 Light-based tuning of ligand half-life supports kinetic proofreading model of T cell activation

Tischer, D.; Weiner, O. D.

10.1101/432864 — immunology — Posted on 2018-10-02

2815 Aggregates dramatically alter fibrin ultrastructure.

Caton, F.; Garcia, X.; Seyve, L.; Tellier, Z.; Chevreux, G.; Bihoreau, N.; Polack, B.

10.1101/432138 — biophysics — Posted on 2018-10-02

2816 Structural and biochemical characterization on the cognate and heterologous interactions of the MazEF-mt9 TA system

Chen, R.; Tu, J.; Tan, Y.; Cai, X.; Yang, C.; Deng, X.; Su, B.; Ma, S.; Liu, X.; Ma, P.; Du, C.; Xie, W.

10.1101/432989 — biochemistry — Posted on 2018-10-02

2817 pH gradient mitigation in the leaf cell secretory pathway alters the defense response of Nicotiana benthamiana to agroinfiltration

V. Jutras, P.; Sainsbury, F.; Goulet, M.-C.; Lavoie, P.-O.; Tardif, R.; Hamel, L.-P.; D'Aoust, M.-A.; Michaud, D.

10.1101/431767 — plant biology — Posted on 2018-10-02

2818 The geography of the Anthropocene differs between the land and the sea

Bowler, D.; Bjorkmann, A.; Dornelas, M.; Myers-Smith, I.; Navarro, L.; Niamir, A.; Supp, S.; Waldock, C.; Vellend, M.; Blowes, S.; Boehning-Gaese, K.; Bruelheide, H.; Elahi, R.; Antao, L.; Hines, J.; Isbell, F.; Jones, H.; Magurran, A.; Cabral, J.; Winter, M.; Bates, A.

10.1101/432880 — ecology — Posted on 2018-10-02

2819 Deep learning light field microscopy for rapid four-dimensional imaging of behaving animals

Fei, P.; Wang, Z.; Zhang, H.; Yang, Y.; Li, Y.

10.1101/432807 — biophysics — Posted on 2018-10-02

2820 Regimes of Complex Lipid Bilayer Phases Induced by Cholesterol Concentration in MD Simulation.

Pantelopulos, G. A.; Straub, J. E.

10.1101/432914 — biophysics — Posted on 2018-10-02

2821 INSTRAL: Discordance-aware Phylogenetic Placement using Quartet Scores

Rabiee, M.; Mirarab, S.

10.1101/432906 — bioinformatics — Posted on 2018-10-02

2822 Robust and sensitive GFP-based cGMP sensor for real time imaging in intact Caenorhabditis elegans

Woldemariam, S.; Nagpal, J.; Li, J.; Schneider, M. S.; Shankar, R.; Futey, M.; Varshney, A.; Andersen, K.; Barsi-Rhyne, B.; Tran, A.; Steuer Costa, W.; Brueggemann, C.; Hamilton, S.; Ferkey, D.; VanHoven, M.; Gottschalk, A.; L'Etoile, N.

10.1101/433425 — neuroscience — Posted on 2018-10-02

2823 Genetic analysis of the Komagataella phaffii centromeres by a color-based plasmid stability assay

Piva, L. C.; De Marco, J.; Moraes, L.; Reis, V.; Torres, F. A. G.

10.1101/433417 — molecular biology — Posted on 2018-10-02

2824 Reversal of microRNA-blocked tumor suppressors by biphenyl- dicarboxylate impedes endotoxin-induced hepatic hyperplasia

Tan, L.-L.; Chen, D.-M.; Song, J.-P.; Xu, Q.; Li, C.-Q.; Zeng, Q.-P.

10.1101/432856 — cancer biology — Posted on 2018-10-02

2825 Heterogeneous Dynamics and Mechanisms of Primary Cilium Disassembly in Mammalian Cells

Mirvis, M.; Siemers, K. A.; Nelson, W. J.; Stearns, T.

10.1101/433144 — cell biology — Posted on 2018-10-02

2826 Structure of the large extracellular loop of FtsX and its interaction with the essential peptidoglycan hydrolase PcsB in Streptococcus pneumoniae

Rued, B. E.; Alcorlo, M.; Edmonds, K. A.; Martinez-Caballero, S.; Straume, D.; Fu, Y.; Bruce, K. E.; Wu, H.; Havarstein, L. S.; Hermoso, J. A.; Winkler, M. E.; Giedroc, D. P.

10.1101/432344 — microbiology — Posted on 2018-10-02

2827 Straightjacket/α 2δ 3 deregulation is associated with cardiac conduction defects in Myotonic Dystrophy type 1

Plantie, E.; Nakamori, M.; Renaud, Y.; Huguet, A.; Choquet, C.; Dondi, C.; Miquerol, L.; Takahashi, M.; Gourdon, G.; Junion, G.; Jagla, T.; Zmojdzian, M.; Jagla, K.

10.1101/431569 — genomics — Posted on 2018-10-02

2828 Dppa2 and Dppa4 directly regulate the Dux driven zygotic transcriptional programme

Eckersley-Maslin, M. A.; Alda-Catalinas, C.; Blotenburg, M.; Kreibich, E.; Krueger, C.; Reik, W.

10.1101/431890 — molecular biology — Posted on 2018-10-01

2829 In vivo characterisation of fluorescent proteins in budding yeast.

Botman, D.; de Groot, D. H.; Schmidt, P.; Goedhart, J.; Teusink, B.

10.1101/431874 — molecular biology — Posted on 2018-10-01

2830 Slow delivery immunization enhances HIV neutralizing antibody and germinal center responses via modulation of immunodominance

Cirelli, K. M.; Carnathan, D. G.; Nogal, B.; Rodriguez, O. L.; Martin, J. T.; Upadhyay, A. A.; Enemuo, C. A.; Gebru, E. H.; Choe, Y.; Viviano, F.; Nakao, C.; Pauthner, M.; Reiss, S.; Cottrell, C. A.; Bastidas, R.; Gibson, W.; Wolabaugh, A. N.; Melo, M. B.; Cosette, B.; Kuman, V.; Patel, N.; Tokatlian, T.; Menis, S.; Kulp, D. W.; Burton, D. R.; Murrell, B.; Bosinger, S. E.; Schief, W. R.; Ward, A. B.; Watson, C. T.; Silvestri, G.; Irvine, D. J.; Crotty, S.

10.1101/432666 — immunology — Posted on 2018-10-01

2831 Bridging the spatiotemporal scales of macromolecular transport in crowded biomimetic systems

Regan, K.; Wulstein, D.; Rasmussen, H.; McGorty, R.; Robertson-Anderson, R. M.

10.1101/431528 — biophysics — Posted on 2018-10-01

2832 Proteomic Profile of TGF-β1 treated Lung Fibroblasts identifies Novel Markers of Activated Fibroblasts in the Silica Exposed Rat Lung

Mao, N.; Xu, H.; Jin, F.; Xu, D.; Sales, D.; Zhang, H.; Wei, Z.; Li, S.; Gao, X.; Cai, W.; Li, D.; Zhang, G.; Zhang, B.; Zhang, L.; Li, S.; Zhu, Y.; Wang, J.; Wang, R.; Summer, R.; Yang, F.

10.1101/431825 — pharmacology and toxicology — Posted on 2018-10-01

2833 IRE1α is critical for kaempferol induced neuroblastoma differentiation

Abdullah, A.; Talwar, P.; Palaniyandi, R.

10.1101/432369 — molecular biology — Posted on 2018-10-01

2834 Molecular mechanisms of gating in the calcium-activated chloride channel bestrophin

Long, S. B.; Miller, A. N.; Vaisey, G.

10.1101/432682 — biochemistry — Posted on 2018-10-01

2835 Optogenetic control shows that kinetic proofreading regulates the activity of the T cell receptor

Yousefi, O. S.; Guenther, M.; Hoerner, M.; Chalupsky, J.; Wess, M.; Brandl, S. M.; Smith, R. W.; Fleck, C.; Kunkel, T.; Zurbriggen, M. D.; Hoefer, T.; Weber, W.; Schamel, W. W. A.

10.1101/432740 — immunology — Posted on 2018-10-01

2836 Immune regeneration in irradiated mice is not impaired by the absence of DPP9 enzymatic activity

Gall, M. G.; Zhang, H. E.; Cook, A.; Jolly, C. J.; McCaughan, G. W.; Roediger, B.; Gorrell, M. D.

10.1101/431775 — immunology — Posted on 2018-10-01

2837 Epigenetic inactivation of oncogenic brachyury (TBXT) by H3K27 histone demethylase controls chordoma cell survival

Cottone, L.; Hookway, E. S.; Cribbs, A.; Wells, G.; Lombard, P.; Ligammari, L.; Tumber, A.; Tirabosco, R.; Amary, F.; Szommer, T.; Johannson, C.; Brennan, P. E.; Pillay, N.; Oppermann, U.; Flanagan, A. M.

10.1101/432005 — cancer biology — Posted on 2018-10-01

2838 Multimodal interferometric imaging of nanoscale structure and macromolecular motion uncovers UV induced cellular paroxysm

Gladstein, S.; Almassalha, L. M.; Cherkezyan, L.; Chandler, J. E.; Eshein, A.; Eid, A.; Zhang, D.; Wu, W.; Bauer, G. M.; Stephens, A. D.; Morochnik, S.; Subramanian, H.; Marko, J. F.; Ameer, G. A.; Szleifer, I.; Backman, V.

10.1101/428383 — biophysics — Posted on 2018-10-01

2839 Emergence of robust nucleosome patterns from an interplay of positioning mechanisms

Nuebler, J.; Wolff, M.; Obermayer, B.; Mobius, W.; Gerland, U.

10.1101/431445 — biophysics — Posted on 2018-10-01

2840 NanoJ: a high-performance open-source super-resolution microscopy toolbox

10.1101/432674 — bioinformatics — Posted on 2018-10-01

2841 A general-purpose protein design framework based on mining sequence-structure relationships in known protein structures

Zhou, J.; Panaitiu, A. E.; Grigoryan, G.

10.1101/431635 — bioengineering — Posted on 2018-10-01

2842 Redistribution of a glucuronoxylomannan epitope towards the capsule surface coincides with Titanisation in the human fungal pathogen Cryptococcus neoformans

Probert, M.; Zhou, X.; Goodall, M.; Johnston, S. A.; Bielska, E.; Ballou, E.; May, R. C.

10.1101/431650 — microbiology — Posted on 2018-10-01

2843 The representational dynamics of visual objects in rapid serial visual processing streams

Grootswagers, T.; Robinson, A. K.; Carlson, T. A.

10.1101/394148 — neuroscience — Posted on 2018-10-01

2844 Maternal immune activation specifically increases diagonal domain volume in the rat brain during early postnatal development

Wood, T. C.; Edye, M. E.; Harte, M. K.; Neill, J. C.; Prinssen, E. P.; Vernon, A. C.

10.1101/432450 — neuroscience — Posted on 2018-10-01

2845 Structural connectivity analysis using Finsler geometry

Dela Haije, T.; Savadjiev, P.; Fuster, A.; Schultz, R. T.; Verma, R.; Florack, L.; Westin, C.-F.

10.1101/424150 — neuroscience — Posted on 2018-10-01

2846 Modulation of Resting Connectivity Between the Mesial Frontal Cortex and Basal Ganglia

Popa, T.; Morris, L. S.; Hunt, R.; Deng, Z.-D.; Horovitz, S.; Mente, K.; Shitara, H.; Baek, K.; Hallett, M.; Voon, V.

10.1101/432609 — neuroscience — Posted on 2018-10-01

2847 In vivo cerebral microdialysis validation of the acute central glutamate response in a translational rat model of concussion combining force and rotation

Masse, I. O.; Moquin, L.; Provost, C.; Guay, S.; Gratton, A.; De Beaumont, L.

10.1101/432633 — neuroscience — Posted on 2018-10-01

2848 Presynaptic Endoplasmic Reticulum Contributes Crucially to Short-term Plasticity in Small Hippocampal Synapses

Singh, N.; Bartol, T.; Levine, H.; Sejnowski, T.; Nadkarni, S.

10.1101/431866 — neuroscience — Posted on 2018-10-01

2849 Venlafaxine stimulates PNN proteolysis and MMP-9 dependent enhancement of gamma power; relevance to antidepressant efficacy

Alaiyed, S.; Bozzelli, P. L.; Caccavano, A.; Wu, J. Y.; Conant, K.

10.1101/432419 — neuroscience — Posted on 2018-10-01

2850 Relationship between MEG global dynamic functional network connectivity measures and symptoms in schizophrenia

Sanfratello, L.; Houck, J. M.; Calhoun, V. D.

10.1101/432435 — neuroscience — Posted on 2018-10-01

2851 Motor context dominates output from Purkinje cell functional regions during reflexive visuomotor behaviors

Knogler, L. D.; Kist, A. M.; Portugues, R.

10.1101/432153 — neuroscience — Posted on 2018-10-01

2852 Poly(ADP-ribose) Polymerase-1 Hyperactivity at DNA Single-Strand Breaks Triggers Seizures and Shortened Lifespan

Komulainen, E.; Rey, S.; Rulten, S.; Ju, L.; McKinnon, P.; Staras, K.; Caldecott, K.

10.1101/431916 — neuroscience — Posted on 2018-10-01

2853 Dynamic Functional Network Connectivity In Schizophrenia With MEG And fMRI, Do Different Time Scales Tell A Different Story?

Sanfratello, L.; Houck, J. M.; Calhoun, V. D.

10.1101/432385 — neuroscience — Posted on 2018-10-01

2854 Dynamic mode decomposition of resting-state and task fMRI

Casorso, J.; Kong, X.; Chi, W.; Van De Ville, D.; Yeo, B. T. T.; Liegeois, R.

10.1101/431718 — neuroscience — Posted on 2018-10-01

2855 Diverse Pathophysiological Processes Converge on Network Disruption in Mania

Lee, I.; Nielsen, K.; Hall, M.-H.; Ongur, D.; Keshavan, M.; Brady, R.

10.1101/430868 — neuroscience — Posted on 2018-10-01

2856 Visual word recognition relies on an orthographic prediction error signal

Gagl, B.; Sassenhagen, J.; Haan, S.; Gregorova, K.; Richlan, F.; Fiebach, C. J.

10.1101/431726 — neuroscience — Posted on 2018-10-01

2857 Commensal gut bacteria convert the immunosuppressant tacrolimus to less potent metabolites

Guo, Y.; Crnkovic, C. M.; Won, K.-J.; Yang, X.; Lee, J. R.; Orjala, J.; Lee, H.; Jeong, H.

10.1101/426197 — pharmacology and toxicology — Posted on 2018-10-01

2858 Roux-Y Gastric Bypass and Sleeve Gastrectomy directly change gut microbiota composition independent of operation type

Paganelli, F. L.; Luyer, M.; Hazelbag, C. M.; Uh, H.-W.; Rogers, M. R. C.; Adriaans, D.; Berbers, R.-M.; Hendrickx, A. P. A.; Viveen, M. C.; Groot, J. A.; Bonten, M. J. M.; Fluit, A. C.; Willems, R. J. L.; Leavis, H. L.

10.1101/395657 — microbiology — Posted on 2018-10-01

2859 Identification of STK25 as a direct activator of LATS signaling

Lim, S.; Hermance, N.; Mudianto, T.; Mustaly, H.; Mauricio, I. P. M.; Vittoria, M. A.; Quinton, R. J.; Howell, B. W.; Cornils, H.; Manning, A. L.; Ganem, N. J.

10.1101/354233 — cell biology — Posted on 2018-10-01

2860 Visual Long-term Memory Can Replace Active Maintenance in Visual Working Memory

Schurgin, M. W.; Cunningham, C. A.; Egeth, H. E.; Brady, T. F.

10.1101/381848 — neuroscience — Posted on 2018-10-01

2861 Single-cell transcriptome analysis of human, marmoset and mouse embryos reveals common and divergent features of preimplantation development

Boroviak, T.; Stirparo, G. G.; Dietmann, S.; Hernando-Herraez, I.; Mohammed, H.; Reik, W.; Smith, A.; Sasaki, E.; Nichols, J.; Bertone, P.

10.1101/385815 — developmental biology — Posted on 2018-10-01

2862 Miltefosine increased cholesterol efflux, induced autophagy and inhibited NLRP3-inflammasome assembly and IL-1β release.

Iacano, A. J.; Lewis, H.; Hazen, J. E.; Andro, H.; Brubaker, G.; Raheem, B. A.; Smith, J. D.; Gulshan, K.

10.1101/430769 — cell biology — Posted on 2018-10-01

2863 QTL mapping and identification of corresponding genomic regions for black pod disease resistance to three Phytophthora species in Theobroma cacao L.

Barreto, M. A.; Rosa, J. R. B. F.; Holanda, I. S. A.; Cardoso-Silva, C. B.; Aguilar-Vildoso, C. I.; Ahnert, D.; Souza, M. M.; Correa, R. X.; Royaert, S.; Marelli, J.-P.; Santos, E. S. L.; Luz, E. D. M. N.; Garcia, A. A. F.; de Souza, A. P.

10.1101/366054 — plant biology — Posted on 2018-10-01

2864 Neuropsychiatric Phenotypes in 3q29 Deletion Syndrome and Novel Features of ASD: Results from the 3q29 Registry

Pollak, R. M.; Murphy, M. M.; Epstein, M. P.; Zwick, M. E.; Klaiman, C.; Saulnier, C. A.; Mulle, J. G.

10.1101/386243 — genetics — Posted on 2018-10-01

2865 Temporal proteomic profiling of postnatal human cortical development

Breen, M. S.; Ozcan, S.; Ramsey, J. M.; Wang, Z.; Ma'ayan, A.; Rustogi, N.; Gottschalk, M. G.; Webster, M. J.; Weickert, C. S.; Buxbaum, J. D.; Bahn, S.

10.1101/188565 — neuroscience — Posted on 2018-10-01

2866 Coherent chaos in a recurrent neural network with structured connectivity

Landau, I. D.; Sompolinsky, H.

10.1101/350801 — neuroscience — Posted on 2018-10-01

2867 The maternal hormone in the male brain: sexually dimorphic distribution of prolactin signalling in the mouse brain

Salais-Lopez, H.; Agustin-Pavon, C.; Lanuza, E.; Martinez-Garcia, F.

10.1101/333161 — neuroscience — Posted on 2018-10-01

2868 Mitochondrial RNA capping: highly efficient 5’-RNA capping with NAD+ and NADH by yeast and human mitochondrial RNA polymerase

Bird, J. G.; Basu, U.; Kuster, D.; Ramachandran, A.; Grudzien-Nogalska, E.; Kiledjian, M.; Temiakov, D.; Patel, S. S.; Ebright, R. H.; Nickels, B. E.

10.1101/381160 — biochemistry — Posted on 2018-10-01

2869 Differential effects of learned associations with words and pseudowords on event-related brain potentials

Kulke, L.; Bayer, M.; Grimm, A.-M.; Schacht, A.

10.1101/240945 — neuroscience — Posted on 2018-10-01

2870 Hierarchical Cognition causes Task Related Deactivations but not just in Default Mode Regions

Farooqui, A. A.; Manly, T.

10.1101/297259 — neuroscience — Posted on 2018-10-01

2871 The Poisson process is the universal law of cancer development: driver mutations accumulate randomly, silently, at constant rate and for many decades, likely in stem cells

Belikov, A. V.

10.1101/231027 — cancer biology — Posted on 2018-10-01

2872 Differences in protein dosage underlie nongenetic differences in traits

Burnaevskiy, N.; Sands, B.; Yun, S.; Tedesco, P. M.; Johnson, T. E.; Kaeberlein, M.; Brent, R.; Mendenhall, A. R.

10.1101/431643 — systems biology — Posted on 2018-10-01

2873 H&E-stained Whole Slide Image Deep Learning Predicts SPOP Mutation State in Prostate Cancer

Schaumberg, A. J.; Rubin, M. A.; Fuchs, T. J.

10.1101/064279 — pathology — Posted on 2018-10-01

2874 Fate-mapping within human kidney organoids reveals conserved mammalian nephron progenitor lineage relationships.

Little, M. H.; Howden, S. E.; Vanslambrouck, J. M.; Wilson, S. B.; Tan, K. S.

10.1101/432161 — cell biology — Posted on 2018-10-01

2875 An information thermodynamic approach quantifying MAPK-related signaling cascades by average entropy production rate

Tsuruyama, T.

10.1101/431676 — biophysics — Posted on 2018-10-01

2876 Temporal control of cortico-thalamic neuron specification by regulation of Neurogenin activity and Polycomb repressive complexes

Oishi, K.; van den Berg, D. L. C.; Guillemot, F.

10.1101/431684 — neuroscience — Posted on 2018-10-01

2877 Endogenous BioID elucidates TCF7L1 interactome modulation upon GSK-3 inhibition in mouse ESCs

Moreira, S.; Seo, C.; Gordon, V.; Xing, S.; Wu, R.; Polena, E.; Fung, V.; Ng, D.; Wong, C. J.; Larson, B.; Raught, B.; Gingras, A.-C.; Lu, Y.; Doble, B.

10.1101/431023 — cell biology — Posted on 2018-10-01

2878 Hexameric helicase G40P unwinds DNA in single base pair steps

Schlierf, M.; Wang, G.; Chen, X. S.; Ha, T.

10.1101/431882 — biophysics — Posted on 2018-10-01

2879 How to obtain cell volume from dynamic pH, temperature and pressure in plants

Pietruszka, M.

10.1101/431700 — biophysics — Posted on 2018-10-01

2880 Modeling effects of crop production, energy development and conservation-grassland loss on avian habitat

Shaffer, J. A.; Roth, C. L.; Mushet, D. M.

10.1101/327148 — ecology — Posted on 2018-10-01

2881 Using camouflage for conservation: colour change in juvenile European lobster

Mynott, S.; Daniels, C.; Widdicombe, S.; Stevens, M.

10.1101/431692 — ecology — Posted on 2018-10-01

2882 The architecture of the endoplasmic reticulum is regulated by the reversible lipid modification of the shaping protein CLIMP-63

Sandoz, P. A.; Denhardt-Eriksson, R. A.; Abrami, L.; Abriata, L.; Spreemann, G.; Maclachlan, C.; Ho, S.; Kunz, B.; Hess, K.; Knott, G. W.; Hatzimanikatis, V.; van der Goot, F. G.

10.1101/431106 — cell biology — Posted on 2018-10-01

2883 PUMILIO hyperactivity drives premature aging of Norad-deficient mice

Kopp, F.; Yalvac, M.; Chen, B.; Zhang, H.; Lee, S.; Gillett, F.; Elguindy, M.; Sivakumar, S.; Yu, H.; Xie, Y.; Mishra, P.; Sahenk, Z.; Mendell, J. T.

10.1101/432112 — molecular biology — Posted on 2018-10-01

2884 There is no single functional atlas even for a single individual: Parcellation of the human brain is state dependent

Salehi, M.; Greene, A. S.; Karbasi, A.; Shen, X.; Scheinost, D.; Constable, R. T.

10.1101/431833 — neuroscience — Posted on 2018-10-01

2885 The TPX-Like protein 3TPXL, but not TPX2, is the primary activator of α Aurora kinases and is essential for embryogenesis in Arabidopsis

Boruc, J.; Deng, X.; Mylle, E.; Besbrugge, N.; Van Durme, M.; Demidov, D.; Tan, T.-R. C.; Tomastikova, E. D.; Vandorpe, M.; Eeckhout, D.; Beeckman, T.; Nowack, M.; De Jaeger, G.; Lin, H.; Liu, B.; Van Damme, D.

10.1101/431791 — cell biology — Posted on 2018-10-01

2886 Large-Scale Annotation of Histopathology Images from Social Media

10.1101/396663 — pathology — Posted on 2018-10-01

2887 Aged-senescent cells contribute to impaired heart regeneration

Lewis-McDougall, F. C.; Ruchaya, P. J.; Domenjo-Vila, E.; Teoh, T. S.; Prata, L.; Cottle, B. J.; Clark, J. E.; Punjabi, P. P.; Awad, W.; Torella, D.; Tchkonia, T.; Kirkland, J. L.; Ellison-Hughes, G. M.

10.1101/397216 — physiology — Posted on 2018-10-01

2888 Relief from nitrogen starvation entails quick unexpected down-regulation of glycolytic/lipid metabolism genes in enological Saccharomyces cerevisiae

Tesniere, C.; Bessiere, C.; Pradal, M.; Sanchez, I.; Blondin, B.; Bigey, F.

10.1101/428979 — microbiology — Posted on 2018-10-01

2889 Molecular memory of periodic thermal stimulation in an immune complex

Stan, R. C. C.; Camargo, M. M. d.

10.1101/398966 — biophysics — Posted on 2018-10-01

2890 Inverse sensitivity analysis of mathematical models avoiding the curse of dimensionality

Lambert, B.; Gavaghan, D.; Tavener, S.

10.1101/432393 — systems biology — Posted on 2018-10-01

2891 Pathogen Detection and Microbiome Analysis of Infected Wheat Using a Portable DNA Sequencer

Hu, Y.; Green, G.; Milgate, A.; Stone, E.; Rathjen, J.; Schwessinger, B.

10.1101/429878 — plant biology — Posted on 2018-10-01

2892 Switching toxic protein function in life cells

Faden, F.; Mielke, S.; Dissmeyer, N.

10.1101/430439 — plant biology — Posted on 2018-10-01

2893 Genome wide association with quantitative resistance phenotypes in Mycobacterium tuberculosis reveals novel resistance genes and regulatory regions

Farhat, M. R.; Freschi, L.; Calderon, R.; Ioerger, T.; Snyder, M.; Meehan, C. J.; de Jong, B.; Rigouts, L.; Sloutsky, A.; Kaur, D.; Sunyaev, S.; van Soolingen, D.; Shendure, J.; Sacchettini, J.; Murray, M.

10.1101/429159 — evolutionary biology — Posted on 2018-10-01

2894 Antlions are sensitive to subnanometer amplitude vibrations carried by sand substrates

Martinez, V.; Nowbahari, E.; Sillam-Dusses, D.; Lorent, V.

10.1101/429209 — animal behavior and cognition — Posted on 2018-10-01

2895 Adherence to the iDSI reference case among published cost-per-DALY averted studies

Emerson, J.; Panzer, A.; Cohen, J. T.; Chalkidou, K.; Teerawattananon, Y.; Sculpher, M.; Wilkinson, T.; Walker, D.; Neumann, P. J.; Kim, D. D.

10.1101/432377 — scientific communication and education — Posted on 2018-10-01

2896 APAP-induced organ toxicity in rats: The prophylactic role of Acrocarpus fraxinifolius

Abd El-Ghffar, E. A.; Barakat, A.; Mohamed, I. K.

10.1101/432328 — physiology — Posted on 2018-10-01

2897 Convergent evolution as an indicator for selection during acute HIV-1 infection

Bertels, F.; Metzner, K. J.; Regoes, R. R.

10.1101/168260 — evolutionary biology — Posted on 2018-10-01

2898 MET-2, a SETDB1 family methyltransferase, coordinates embryo events through distinct histone H3 methylation states

Mutlu, B.; Chen, H.-M. M.; Hall, D. H.; Mango, S. E.

10.1101/429902 — developmental biology — Posted on 2018-10-01

2899 Social networks in the presence and absence of visual cues

Bierbach, D.; Krause, S.; Romanczuk, P.; Lukas, J.; Arias-Rodriguez, L.; Krause, J.

10.1101/432336 — animal behavior and cognition — Posted on 2018-10-01

2900 Dynamic interaction network inference from longitudinal microbiome data

Lugo-Martinez, J.; Ruiz-Perez, D.; Narasimhan, G.; Bar-Joseph, Z.

10.1101/430462 — microbiology — Posted on 2018-10-01

2901 Host-parasite interaction explains variation in prevalence of avian haemosporidians at the community level

Garcia-Longoria, L.; Marzal, A.; de Lope, F.; Garamszegi, L.

10.1101/432260 — ecology — Posted on 2018-10-01

2902 Stage-Dependent Differential Gene Expression Profiles of Cranial Neural Crest Cells Derived from Mouse Induced Pluripotent Stem Cells

Odashima, A.; Onodera, S.; Saito, A.; Nakamura, T.; Ogihara, Y.; Ichinohe, T.; Azuma, T.

10.1101/432302 — cell biology — Posted on 2018-10-01

2903 Minimal medical imaging can accurately reconstruct geometric bone models for musculoskeletal models

Suwarganda, E.; Diamond, L.; Saxby, D.; Lloyd, D.; Killen, B.; Savage, T.

10.1101/432310 — bioengineering — Posted on 2018-10-01

2904 Experimental co-transmission of simian immunodeficiency virus (SIV) and the macaque homologs of the Kaposi sarcoma-associated herpesvirus (KSHV) and Epstein-Barr virus (EBV)

Bruce, A. G.; Barcy, S.; Staheli, J.; Bielefeldt-Ohmann, H.; Ikoma, M.; Howard, K.; Rose, T. M.

10.1101/432351 — microbiology — Posted on 2018-10-01

2905 Strength of T cell signaling regulates HIV-1 replication and establishment of latency

Gagne, M.; Michaels, D.; Schiralli Lester, G.; Wong, W.; Gummuluru, S.; Henderson, A. J.

10.1101/432401 — microbiology — Posted on 2018-10-01

2906 Activin Signaling Regulates Autophagy and Cardiac Aging through mTORC2

Chang, K.; Kang, P.; Liu, Y.; Huang, K.; Taylor, E.; Sagona, A. P.; Nezis, I. P.; Bodmer, R.; Ocorr, K.; Bai, H.

10.1101/139360 — genetics — Posted on 2018-10-01

2907 Relationship between ecological stoichiometry and community diversity of plant ecosystems in the upper reaches of the Tarim River, China

Zhao, J.; Lu, G.; Chen, X.

10.1101/432278 — ecology — Posted on 2018-10-01

2908 Targeting mitochondria in cancer therapy could provide a basis for the selective anti-cancer activity

Rozanov, D.; Cheltsov, A.; Nilsen, A.; Boniface, C.; Korkola, J.; Gray, J.; Tyner, J.; Tognon, C. E.; Mills, G. B.; Spellman, P.

10.1101/432252 — cancer biology — Posted on 2018-10-01

2909 The effect of facial expression on contrast sensitivity: a behavioural investigation and extension of Hedger, Garner, & Adams (2015).

Webb, A. L. M.; Hibbard, P. B.

10.1101/432229 — neuroscience — Posted on 2018-10-01

2910 A seleno-hormetine protects bone marrow hematopoietic cells against ionizing radiation-induced toxicity

Bartolini, D.; Wang, Y.; Zhang, J.; Giustarini, D.; Rossi, R.; Wang, G.; Torquato, P.; Townsend, D. M.; Tew, K. D.; Galli, F.; Bartolini Desiree, Wang Yanzhong , Zhang Jie , Giustarini Daniela, Rossi Ranieri, Wang, Gavin,