bioRxiv directory

Wilkins, K. B.; Yao, J.

10.1101/656819 — neuroscience — Posted on 2019-05-31

3 The Impact of Antimalarial Resistance on the Genetic Structure of Plasmodium falciparum in the DRC

Verity, R. J.; Aydemir, O.; Brazeau, N. F.; Watson, O. J.; Hathaway, N. J.; Mwandagalirwa, M. K.; Marsh, P. W.; Thwai, K.; Fulton, T.; Denton, M.; Morgan, A. P.; Parr, J. B.; Tumwebaze, P. K.; Conrad, M.; Rosenthal, P. J.; Ishengoma, D. S.; Ngondi, J.; Gutman, J.; Mulenga, M.; Norris, D. E.; Moss, W. J.; Mensah, B. A.; Myers-Hansen, J. L.; Ghansah, A.; Tshefu, A. K.; Ghani, A. C.; Meshnick, S. R.; Bailey, J. A.; Juliano, J. J.

10.1101/656561 — genomics — Posted on 2019-05-31

4 Comparative analyses of saprotrophy in Salisapilia sapeloensis and diverse plant pathogenic oomycetes reveal lifestyle-specific gene expression

de Vries, S.; de Vries, J.; Archibald, J. M.; Slamovits, C. H.

10.1101/656496 — microbiology — Posted on 2019-05-31

5 Why did the Tc1-like elements of mollusks acquired the spliceosomal introns?

Puzakov, M.; Puzakova, L.; Cheresiz, S.

10.1101/656579 — genetics — Posted on 2019-05-31

6 Oxamniquine resistance alleles are widespread in Old World Schistosoma mansoni and predate drug deployment

Chevalier, F.; Le Clec'h, W.; McDew-White, M.; Menon, V.; Guzman, M. A.; Holloway, S. P.; Cao, X.; Taylor, A. B.; Kinung'hi, S.; Gouvras, A. N.; Webster, B. L.; Webster, J. P.; Emery, A. M.; Rollinson, D.; Garba Djirmay, A.; Al Mashikhi, K. M.; Al Yafae, S.; Idris, M. A.; Mone, H.; Mouahid, G.; Hart, P. J.; LoVerde, P. T.; Anderson, T. J.

10.1101/657056 — evolutionary biology — Posted on 2019-05-31

7 Gold Nanobipyramids as Second Near Infrared Optical Coherence Tomography Contrast Agents for Multiplexed In Vivo Lymphangiography

Si, P.; Shevidi, S.; Yuan, E.; Yuan, K.; Lautman, Z.; Jeffrey, S. S.; Sledge, G. W.; de la Zerda, A.

10.1101/656744 — bioengineering — Posted on 2019-05-31

8 Scalable Spike Source Localization in Extracellular Recordings using Amortized Variational Inference

Hurwitz, C. L.; Xu, K.; Srivastava, A.; Buccino, A. P.; Hennig, M. H.

10.1101/656389 — neuroscience — Posted on 2019-05-31

9 Deconstructing hunting behavior reveals a tightly coupled stimulus-response loop

Mearns, D. S.; Semmelhack, J. L.; Donovan, J. C.; Baier, H.

10.1101/656959 — neuroscience — Posted on 2019-05-31

10 The absence of F-box motif Encoding Gene SAF1 and Chromatin Associated factor CTF8 together contributes to MMS Resistant and HU Sensitive phenotype in S. cerevisiae

Sharma, M.; Verma, V.; Bairwa, N. K.

10.1101/656363 — genetics — Posted on 2019-05-31

11 A novel role for Myosin-Va in mitochondrial fission

Araujo, J. S.; Silva-Junior, R. M. P.; Zhang, T.; Schiavon, C. R.; Chu, Q.; Wu, M.; Pontes, C. L. S.; Souza, A. O.; Alberici, L. C.; Santos, A. M.; Ingle, S. B.; Saghatelian, A.; Spudich, J.; Manor, U.; Espreafico, E. M.

10.1101/655803 — cell biology — Posted on 2019-05-31

12 3D RNA-seq - a powerful and flexible tool for rapid and accurate differential expression and alternative splicing analysis of RNA-seq data for biologists

Guo, W.; Tzioutziou, N.; Stephen, G.; Milne, I.; Calixto, C.; Waugh, R.; Brown, J. W.; Zhang, R.

10.1101/656686 — bioinformatics — Posted on 2019-05-31

13 Tongue Kinematics. Cortex-dependent corrections as the mouse tongue reaches for, and misses, targets

Bollu, T.; Whitehead, S. C.; Kardon, B.; Redd, J.; Liu, M. H.; Goldberg, J. H.

10.1101/655852 — neuroscience — Posted on 2019-05-31

14 Decoding the development of the blood and immune systems during human fetal liver haematopoiesis

Popescu, D.-M.; Botting, R. A.; Stephenson, E.; Green, K.; Jardine, L.; Calderbank, E. F.; Efremova, M.; Acres, M.; Maunder, D.; Vegh, P.; Goh, I.; Gitton, Y.; Park, J.; Polanski, K.; Vento-Tormo, R.; Miao, Z.; Rowell, R.; McDonald, D.; Fletcher, J.; Dixon, D.; Poyner, E.; Reynolds, G.; Mather, M.; Moldovan, C.; Mamanova, L.; Greig, F.; Young, M. D.; Meyer, K.; Lisgo, S.; Bacardit, J.; Fuller, A.; Millar, B.; Innes, B.; Lindsay, S.; Stubbington, M. J. T.; Kowalczyk, M. D.; Li, B. D.; Ashenbrg, O.; Tabaka, M. D.; Dionne, D.; Tickle, T. L.; Slyper, M.; Rozenblatt-Rosen, O.; Filby, A.; Villani, A

10.1101/654210 — developmental biology — Posted on 2019-05-31

15 Hybrid refinement of heterogeneous conformational ensembles using spectroscopic data

Hays, J. M.; Cafiso, D. S.; Kasson, P. M.

10.1101/656595 — biophysics — Posted on 2019-05-31

16 Defense hormones modulate root microbiome diversity and composition in tomato

French, E.; Ghaste, M.; Widhalm, J. R.; Iyer-Pascuzzi, A. S.

10.1101/656769 — plant biology — Posted on 2019-05-31

17 Novel genome-wide associations for anhedonia, genetic correlation with psychiatric disorders, and polygenic association with brain structure.

Ward, J.; Lyall, L.; Bethlehem, R. A. I.; Ferguson, A. A. I.; Strawbridge, R. J.; Lyall, D. M.; Cullen, B. M.; Graham, N.; Johnston, K. J. A.; Bailey, M.; Murray, G. K.; Smith, D. J.

10.1101/656298 — genetics — Posted on 2019-05-31

18 Phanerozoic Radiation of Ammonia Oxidizing Bacteria

Ward, L. M.; Johnston, D.; Shih, P. M.

10.1101/655399 — evolutionary biology — Posted on 2019-05-31

19 Ecological scaffolding and the evolution of individuality: the transition from cells to multicellular life

Black, A. J.; Bourrat, P.; Rainey, P. B.

10.1101/656660 — evolutionary biology — Posted on 2019-05-31

20 Seasonal and spatial variation in growth and abundance of zebra mussel (Dreissena polymorpha) in a recently invaded lake: implications for management

Rolla, M.; Consuegra, S.; Hall, D. J.; Garcia de Leaniz, C.

10.1101/656371 — ecology — Posted on 2019-05-31

21 Pediatric High Grade Glioma Resources From the Children’s Brain Tumor Tissue Consortium (CBTTC) and Pediatric Brain Tumor Atlas (PBTA)

Ijaz, H.; Koptyra, M. P.; Gaonkar, K. S.; Rokita, J. L.; Baubet, V. P.; Tauhid, L.; Zhu, Y.; Brown, M. A.; Lopez Garcia, G.; Zhang, B.; Diskin, S. J.; Vaksman, Z.; Mason, J. L.; Appert, E. M.; Lilly, J. V.; Lulla, R. R.; De Raedt, T.; Heath, A. P.; Felmeister, A.; Raman, P.; Nazarian, J.; Santi-Vicini, M.; Storm, P. B.; Resnick, A. C.; Waanders, A. J.; Cole, K. A.

10.1101/656587 — cancer biology — Posted on 2019-05-31

22 functionInk: An efficient method to detect functional groups in multidimensional networks reveals the hidden structure of ecological communities

Pascual-Garcia, A.; Bell, T.

10.1101/656504 — bioinformatics — Posted on 2019-05-31

23 StrainHub: A phylogenetic tool to construct pathogen transmission networks

de Bernardi Schneider, A.; Ford, C. T.; Hostager, R.; Williams, J.; Cioce, M.; Catalyürek, U. V.; Wertheim, J. O.; Janies, D.

10.1101/650283 — bioinformatics — Posted on 2019-05-31

24 A delay in sampling information from temporally autocorrelated visual stimuli

Callahan-Flintoft, C.; Holcombe, A. O.; Wyble, B.

10.1101/656850 — neuroscience — Posted on 2019-05-31

25 An immunome perturbation is present in juvenile idiopathic arthritis patients who are in remission and will relapse upon anti-TNFα withdrawal

Leong, J. Y.; Chen, P.; Yeo, J. G.; Ally, F.; Chua, C.; Hazirah, S. N.; Poh, S. L.; Pan, L.; Lai, L.; Lee, E. S. C.; Bathi, L. D. T.; Paediatric Rheumatology Collaborative Study, ; Arkachaisri, T.; Lovell, D.; Albani, S.

10.1101/656124 — immunology — Posted on 2019-05-31

26 Low abundance of circulating tumor DNA in localized prostate cancer

Hennigan, S. T.; Trostel, S. Y.; Terrigino, N. T.; Voznesensky, O. S.; Schaeffer, R. J.; Whitlock, N. C.; Wilkinson, S.; Carrabba, N. V.; Atway, R.; Shema, S.; Lake, R.; Sweet, A. R.; Einstein, D. J.; Karzai, F.; Gulley, J. L.; Chang, P.; Bubley, G. J.; Balk, S. P.; Ye, H.; Sowalsky, A. G.

10.1101/655506 — genomics — Posted on 2019-05-31

27 Impact of RNA Extraction and Target Capture Methods on RNA Sequencing Using Formalin-Fixed, Paraffin Embedded Tissues

Jen, J.; Hilker, C. A.; Bhagwate, A. V.; Jang, J. S.; Meyer, J. G.; Nair, A. A.; Davila, J. I.; McDonald, A. M.; Winters, J. L.; Rebecca, W. N.; Jackson, R. A.; Gorman, J. A.; Cicek, M. S.; Oliveira, A. M.; Thompson, E. A.; Eckloff, B. W.; Halling, K. C.; Sun, Z. A.

10.1101/656736 — genomics — Posted on 2019-05-31

28 Pleiotropy or linkage? Their relative contributions to the genetic correlation of quantitative traits and detection by multi-trait GWA studies

Chebib, J.; Guillaume, F.

10.1101/656413 — evolutionary biology — Posted on 2019-05-31

29 Structuring the unstructured: estimating species-specific absence from multi-species presence data to inform pseudo-absence selection in species distribution models

Croft, S.; Smith, G. C.

10.1101/656629 — ecology — Posted on 2019-05-31

30 Nubp2 is required for cranial neural crest survival in the mouse.

DiStasio, A.; Paulding, D.; Chatuverdi, P.; Stottmann, R. W.

10.1101/656652 — developmental biology — Posted on 2019-05-31

31 Local translation of yeast ERG4 mRNA at the endoplasmic reticulum requires the brefeldin A resistance protein Bfr1

Manchalu, S.; Mittal, N.; Spang, A.; Jansen, R.-P.

10.1101/656405 — cell biology — Posted on 2019-05-31

32 SPECS: A non-parameteric method to identify tissue-specific molecular features for unbalanced sample groups

Everaert, C.; Volders, P.-J.; Morlion, A.; Thas, O.; Mestdagh, P.

10.1101/656397 — bioinformatics — Posted on 2019-05-31

33 Assessment of the in vitro function of human stem cell-derived β cells

Srivatsava, A. R.; Shahan, S. T.; Gutgesell, L. C.; Velazco-Cruz, L.; Millman, J. R.

10.1101/656785 — bioengineering — Posted on 2019-05-31

34 Temporal Profile of Transporter mRNA Expression in the Brain after Traumatic Brain Injury in Developing Rats

Adams, S. M.; Hagos, F. T.; Cheng, J. P.; Clark, R. S. B.; Kochanek, P. M.; Kline, A. E.; Poloyac, S. M.; Empey, P. E.

10.1101/647420 — pharmacology and toxicology — Posted on 2019-05-31

35 Rapid Online Changes of Mind during Value-based Action Decisions

Marti Marca, A.; Deco, G.; Cos, I.

10.1101/656330 — neuroscience — Posted on 2019-05-31

36 Mind the gap: micro-expansion joints drastically decrease the bending of FIB-milled cryo-lamellae

Wolff, G.; Limpens, R. W. A. L.; Zheng, S.; Snijder, E. J.; Agard, D.; Koster, A. J.; Barcena, M.

10.1101/656447 — microbiology — Posted on 2019-05-31

37 The CC′ loop of IgV domain containing immune checkpoint receptors: From a bystander to an active determinant of receptor:ligand binding

Kundapura, S. V.; Ramagopal, U. A.

10.1101/656462 — immunology — Posted on 2019-05-31

38 Deciphering sex-specific genetic architectures using local Bayesian regressions

Funkhouser, S. A.; Vazquez, A. I.; Steibel, J. P.; Ernst, C. W.; de los Campos, G.

10.1101/653386 — genetics — Posted on 2019-05-31

39 Biting rhythm, fecundity and longevity rate of Aedes albopictus (Skuse) females from different urbanized settings in Penang Island, Malaysia under uncontrolled laboratory conditions.

Muhammad, N. A. F.; ABU KASSIM, N. F.; Ab Majid, A. H.; Dieng, H.; Avicor, S. W.

10.1101/657023 — epidemiology — Posted on 2019-05-31

40 Changes-of-mind in the absence of new post-decision evidence

Atiya, N. A. A.; Zgonnikov, A.; O'Hora, D.; Wong-Lin, K.

10.1101/656983 — neuroscience — Posted on 2019-05-31

41 Interpreting neural decoding models of working memory load using grouped model reliance

Valentin, S.; Harkotte, M.; Popov, T.

10.1101/656975 — neuroscience — Posted on 2019-05-31

42 New estimates of the Zika virus epidemic attack rate in Northeastern Brazil from 2015 to 2016: A modelling analysisbased on Guillain-Barre Syndrome (GBS) surveillance data

He, D.; ZHAO, S. F.; lin, q.; MUSA, S. S.; Stone, L.

10.1101/657015 — epidemiology — Posted on 2019-05-31

43 Dual forms of aging-related NADPH diaphorase neurodegeneration in the sacral spinal cord of aged non-human primates

Li, Y.; Wei, Z.; Jia, Y.; Hou, W.; Wang, Y.; Yu, S.; Shi, G.; Du, G.; Tan, H.

10.1101/527358 — neuroscience — Posted on 2019-05-31

44 Spatial and epidemiologic features of dengue in Sabah, Malaysia

Murphy, A.; Rajahram, G. S.; Jilip, J.; Maluda, M.; William, T.; Hu, W.; Reid, S.; Devine, G. J.; Frentiu, F. D.

10.1101/657031 — epidemiology — Posted on 2019-05-31

45 A kinase-dependent checkpoint prevents escape of immature ribosomes into the translating pool

Parker, M. D.; Collins, J. C.; Korona, B.; Ghalei, H.; Karbstein, K.

10.1101/656942 — molecular biology — Posted on 2019-05-31

46 Local adaptation drives the diversification of effectors in the fungal wheat pathogen Parastagonospora nodorum in the United States

Richards, J.; Stukenbrock, E.; Carpenter, J.; Liu, Z.; Cowger, C.; Faris, J.; Friesen, T. L.

10.1101/657007 — evolutionary biology — Posted on 2019-05-31

47 Model-based analysis of response and resistance factors of cetuximab treatment in gastric cancer cell lines

Raimundez, E.; Keller, S.; Zwingenberger, G.; Ebert, K.; Hug, S.; Theis, F. J.; Maier, D.; Luber, B.; Hasenauer, J.

10.1101/656967 — systems biology — Posted on 2019-05-31

48 Armadillo repeat-containing protein 1 is a dual localization protein associated with mitochondrial intermembrane space bridging complex

Wagner, F.; Kunz, T. C.; Chowdhury, S. R.; Thiede, B.; Fraunholz, M.; Eger, D.; Kozjak-Pavlovic, V.

10.1101/656934 — cell biology — Posted on 2019-05-31

49 Lactic Acid Containing Polymers Produced in Engineered Sinorhizobium meliloti and Pseudomonas putida

Tran, T.; Charles, T. C.

10.1101/656926 — microbiology — Posted on 2019-05-31

50 Predictive factors for unfavourable treatment in MDR-TB and XDR-TB patients in Rio de Janeiro State, Brazil, 2000-2016

Bhering, M. L.; Duarte, R.; Kritski, A. L.

10.1101/656884 — epidemiology — Posted on 2019-05-31

51 Factors affecting the biology of Pachycrepoideus vindemmiae (Hymenoptera: Pteromalidae) on spotted-wing drosophila (Drosophila suzukii)

Bezerra DaSilva, C. S.; Price, B. E.; Soohoo-Hui, A.; Walton, V. M.

10.1101/656900 — ecology — Posted on 2019-05-31

52 Identification of lumbrokinase by fibrin-plate method, fibrin-zymography and liquid chromatography mass spectrometry

ke, b.; Xian, R.; Jiang, H.; Guo, J.

10.1101/656827 — biochemistry — Posted on 2019-05-31

53 The Dps4 from Nostoc punctiforme ATCC 29133 is a member of His-type FOC containing Dps protein class that can be broadly found among cyanobacteria

Howe, C.; Moparthi, V. K.; Ho, F. M.; Persson, K.; Stensjö, K.

10.1101/656892 — biochemistry — Posted on 2019-05-31

54 Effects of rocuronium, sugammadex and rocuronium-sugammadex complex on coagulation in rats

Braga, E. L.; Cavalcanti, I. L.; Schanaider, A.; Barrucand, L.; Vercosa, N.; de Boer, H. D.; Vane, L. A.

10.1101/656868 — pharmacology and toxicology — Posted on 2019-05-31

55 Detection of apoptosis and matrical degeneration within the intervertebral discs of rats due to passive cigarette smoking.

Nakahashi, M.; Esumi, M.; Tokuhashi, Y.

10.1101/656876 — pathology — Posted on 2019-05-31

56 Aspirin Compliance for Cardiovascular Disease and Colorectal Cancer Prevention in the Uninsured Population

Liu, N.; Mathews, A. T.; Swanson, J.; Mhaskar, R.; Mathews, A.; Ayoubi, N.; Mirza, A.-S.

10.1101/656835 — epidemiology — Posted on 2019-05-31

57 Clustering of activated CD8 T cells around malaria-infected hepatocytes is rapid and is driven by antigen-specific T cells

Kelemen, R.; Rajakaruna, H.; Cockburn, I. A.; Ganusov, V. V.

10.1101/508796 — immunology — Posted on 2019-05-31

58 DeepFly3D: A deep learning-based approach for 3D limb and appendage tracking in tethered, adult Drosophila

Günel, S.; Rhodin, H.; Morales, D.; Campagnolo, J.; Ramdya, P.; Fua, P.

10.1101/640375 — animal behavior and cognition — Posted on 2019-05-31

59 A nanometer difference in myofilament lattice spacing of two cockroach leg muscles explains their different functions

Tune, T. N.; Ma, W.; Irving, T.; Sponberg, S. N.

10.1101/656272 — biophysics — Posted on 2019-05-31

60 White matter alterations in autism spectrum disorder and attention-deficit/hyperactivity disorder in relation to sensory profile

Ohta, H.; Aoki, Y.; Itahashi, T.; Kanai, C.; Fujino, J.; Nakamura, M.; Kato, N.; Hashimoto, R.-i.

10.1101/656264 — neuroscience — Posted on 2019-05-31

61 Universal continuous severity traits underlying hundreds of Parkinson’s disease clinical features

Sandor, C.; Millin, S.; Dahl, A.; Lawton, M.; Hubbard, L.; Bojovic, B.; Peyret-Guzzon, M.; Matten, H.; Blancher, C.; Williams, N.; Ben-Shlomo, Y.; Hu, M. T.; Grosset, D. G.; Marchini, J.; Webber, C.

10.1101/655217 — neuroscience — Posted on 2019-05-31

62 Accuracy of somatic variant detection in multiregional tumor sequencing data

Detering, H.; Tomas, L.; Prieto, T.; Posada, D.

10.1101/655605 — bioinformatics — Posted on 2019-05-31

63 Yet another de novo genome assembler

Vaser, R.; Sikic, M.

10.1101/656306 — bioinformatics — Posted on 2019-05-31

64 RintC: fast and accuracy-aware decomposition of distributions of RNA secondary structures with extended logsumexp

Takizawa, H.; Iwakiri, J.; Asai, K.

10.1101/656256 — bioinformatics — Posted on 2019-05-31

65 MolNetEnhancer: enhanced molecular networks by integrating metabolome mining and annotation tools

Ernst, M.; Kang, K. B.; Caraballo-Rodriguez, A. M.; Nothias, L.-F.; Wandy, J.; Wang, M.; Rogers, S.; Medema, M. H.; Dorrestein, P. C.; van der Hooft, J. J. J.

10.1101/654459 — biochemistry — Posted on 2019-05-31

66 A reversible memory switch for plant synthetic biology based on the phage PhiC31 integration system

Bernabe-Orts, J. M.; Quijano-Rubio, A.; Mancheno-Bonillo, J.; Moles-Casas, V.; Selma, S.; Granell, A.; Orzaez, D.

10.1101/656223 — synthetic biology — Posted on 2019-05-31

67 Doxorubicin-loaded human serum albumin nanoparticles overcome transporter-mediated drug resistance

Onafuye, H.; Pieper, S.; Mulac, D.; Cinatl, J.; Wass, M. N.; Langer, K.; Michaelis, M.

10.1101/655662 — pharmacology and toxicology — Posted on 2019-05-31

68 Taurine promotes axonal regeneration after a complete spinal cord injury in lampreys

Sobrido-Camean, D.; Fernandez-Lopez, B.; Pereiro, N.; Lafuente, A.; Rodicio, M. C.; Barreiro-Iglesias, A.

10.1101/655191 — neuroscience — Posted on 2019-05-31

69 Reconstructing the blood metabolome and genotype using long-range chromatin interactions

Fadason, T.; Schierding, W.; Kolbenev, N.; Liu, J.; Ingram, J. R.; O'Sullivan, J. M.

10.1101/656132 — molecular biology — Posted on 2019-05-31

70 A deletion in the STA1 promoter determines maltotriose and starch utilization in STA1+ Saccharomyces cerevisiae strains

Krogerus, K.; Magalhaes, F.; Kuivanen, J.; Gibson, B.

10.1101/654681 — microbiology — Posted on 2019-05-31

71 A systematic investigation on the involvement of complement pathway in diabetic retinopathy

Shahulhameed, S.; Vishwakarma, S.; Chhablani, J. K.; Tyagi, M.; Pappurru, R. R.; Kaur, I.; Chakrabarti, S.

10.1101/656314 — immunology — Posted on 2019-05-31

72 Environmental (e)DNA detection of the invasive pink salmon Oncorhynchus gorbuscha during the 2017 Norwegian invasion

Gargan, L. M.; Fossoy, F.; Mo, T. A.; Carlsson, J. E. L.; Ball, B.; Carlsson, J.

10.1101/651554 — genetics — Posted on 2019-05-31

73 The role of premature evidence accumulation in making difficult perceptual decisions under temporal uncertainty

Devine, C. A.; Gaffney, C.; Loughnane, G. M.; Kelly, S. P.; O'Connell, R. G.

10.1101/655266 — neuroscience — Posted on 2019-05-31

74 Transcriptomic insights into the establishment of coral-algal symbioses from the symbiont perspective

Mohamed, A.; Andrade, N.; Moya, A.; Chan, C. X.; Negri, A.; Bourne, D.; Ball, E.; Miller, D. J.

10.1101/652131 — genomics — Posted on 2019-05-31

75 Start codon context controls translation initiation in the fungal kingdom

Wallace, E. W. J.; Maufrais, C.; Sales-Lee, J.; Tuck, L. R.; de Oliveira, L.; Feuerbach, F.; Moyrand, F.; Natarajan, P.; Madhani, H. D.; Janbon, G.

10.1101/654046 — genomics — Posted on 2019-05-31

76 Amyloid-β induced membrane damage instigates tunnelling nanotubes and direct cell-to-cell transfer

Ollinger, K.; Kagedal, K.; Nath, S.

10.1101/655340 — cell biology — Posted on 2019-05-31

77 Collective forces of tumor spheroids in three-dimensional biopolymer networks

Mark, C.; Grundy, T. J.; Böhringer, D.; Steinwachs, J.; O'Neill, G. M.; Fabry, B.

10.1101/654079 — biophysics — Posted on 2019-05-31

78 Marine cyanobacteria tune energy transfer efficiency in their light-harvesting antennae by modifying pigment coupling

Kolodny, Y.; Zer, H.; Propper, M.; Yochelis, S.; Paltiel, Y.; Keren, N.

10.1101/656173 — plant biology — Posted on 2019-05-31

79 Relating anthropometric indicators to brain structure in 2-month-old Bangladeshi infants growing up in poverty: a pilot study

Turesky, T. K.; Xie, W.; Kumar, S.; Sliva, D.; Gagoski, B.; Vaughn, J.; Zollei, L.; Haque, R.; Kakon, S. H.; Islam, N.; Petri, W. K.; Nelson, C. A.; Gaab, N.

10.1101/655068 — neuroscience — Posted on 2019-05-31

80 AimB is a small protein regulator of cell size and MreB assembly

Werner, J. N.; Shi, H.; Hsin, J.; Huang, K.; Gitai, Z.; Klein, E. A.

10.1101/655720 — microbiology — Posted on 2019-05-31

81 Mitochondrial Genome Diversity in the Central Siberian Plateau with Particular Reference to Prehistory of Northernmost Eurasia

Dryomov, S. V.; Nazhmidenova, A. M.; Starikovskaya, E. B.; Shalaurova, S. A.; Rohland, N. V.; Mallick, S.; Bernardos, R.; Derevianko, A. P.; Reich, D. E.; Sukernik, R. I.

10.1101/656181 — genetics — Posted on 2019-05-31

82 Parallel accumulation - serial fragmentation combined with data-independent acquisition (diaPASEF): Bottom-up proteomics with near optimal ion usage

Meier, F.; Brunner, A.-D.; Frank, M.; Ha, A.; Voytik, E.; Kaspar-Schoenefeld, S.; Lubeck, M.; Raether, O.; Aebersold, R.; Collins, B. C.; Rost, H. L.; Mann, M.

10.1101/656207 — systems biology — Posted on 2019-05-31

83 Plasmodium PIMMS43 is required for ookinete evasion of the mosquito complement-like response and sporogonic development in the oocyst

Ukegbu, V.; Giorgalli, M.; Tapanelli, S.; Rona, L. D.; Jaye, A.; Wyer, C.; Angrisano, F.; Blagborough, A. M.; Christophides, G. K.; Vlachou, D.

10.1101/652115 — microbiology — Posted on 2019-05-31

84 Restored tactile sensation improves neuroprosthetic arm control

Flesher, S. N.; Downey, J. E.; Weiss, J. M.; Hughes, C. L.; Herrera, A. J.; Tyler-Kabara, E. C.; Boninger, M. L.; Collinger, J. L.; Gaunt, R. A.

10.1101/653428 — clinical trials — Posted on 2019-05-31

85 Understanding Cognitive Impairment in Mood Disorders: Mediation Analyses in the UK Biobank Cohort

Cullen, B.; Smith, D. J.; Deary, I. J.; Pell, J. P.; Keyes, K. M.; Evans, J. J.

10.1101/655290 — epidemiology — Posted on 2019-05-31

86 Predicting spread and effective control measures for African swine fever - should we blame the boars?

Taylor, R. A.; Podogrski, T.; Simons, R. R. L.; Ip, S.; Gale, P.; Kelly, L. A.; Snary, E. L.

10.1101/654160 — epidemiology — Posted on 2019-05-31

87 Evidence of a Causal Association Between Cancer and Alzheimer’s Disease: a Mendelian Randomization Analysis

Seddighi, S.; Houck, A. L.; Rowe, J. B.; Pharoah, P. D.

10.1101/653352 — epidemiology — Posted on 2019-05-31

88 Risk taking to obtain reward: gender differences and associations with emotional and depressive symptoms in a nationally representative cohort of UK adolescents.

Lewis, G.; Srinivasan, R.; Roiser, J.; Blakemore, S.-J.; Flouri, E.; Lewis, G.

10.1101/644450 — epidemiology — Posted on 2019-05-31

89 Dissecting the economic impact of soybean diseases in the United States over two decades

Bandara, A. Y.; Weerasooriya, D. K.; Bradley, C. A.; Allen, T. W.; Esker, P. D.

10.1101/655837 — epidemiology — Posted on 2019-05-31

90 HBV seroepidemiology data for Africa provides insights into transmission and prevention

McNaughton, A. L.; Lourenco, J.; Bester, P. A.; Mokaya, J.; Lumley, S. F.; Forde, D.; Maponga, T.; Katumba, K.; Goedhals, D.; Gupta, S.; Seely, J.; Newton, R.; Ocama, P.; Matthews, P. C.

10.1101/654061 — epidemiology — Posted on 2019-05-31

91 Agent-based modeling of persons who inject drugs in metropolitan Chicago suggests that re-treatment with antivirals of persons who are re-infected with Hep C is critical to achieve the WHO incidence reduction objective by 2030

Tatara, E.; GUTFRAIND, A.; COLLIER, N.; COTLER, S.; MAJOR, M.; BOODRAM, B.; Ozik, J.; DAHARI, H.

10.1101/653196 — epidemiology — Posted on 2019-05-31

92 Multi-ethnic genome-wide association study of decomposed cardioelectric phenotypes illustrates strategies to identify and characterize evidence of shared genetic effects for complex traits

Baldassari, A. R.; Avery, C. L.; Highland, H. M.; Arking, D. R.; Buyske, S.; Darbar, D.; Gondalia, R.; Graff, M. R.; Guo, X. R.; Heckbert, S. R.; Hindorff, L. A.; Hodonsky, C. J.; Ida Chen, Y.-D.; Kaplan, R. C.; Peters, U.; Post, W.; Reiner, A. P.; Shohet, R. V.; Sotoodehnia, N.; Tao, R.; Taylor, K. D.; Yao, J. D.; Kenny, E. D.; Lin, H. J.; Soliman, E. Z.; Whitsel, E. A.; North, K. E.; Kooperberg, C.; Rotters, j.; Seyerle, A. A.

10.1101/654012 — epidemiology — Posted on 2019-05-31

93 Metronomic capecitabine as an immune modulator in glioblastoma patients reduces myeloid-derived suppressor cells

Peereboom, D. M.; Alban, T. J.; Grabowski, M. M.; Alvarado, A. G.; Otvos, B.; Bayik, D.; Roversi, G. A.; McGraw, M.; Huang, P.; Mohammadi, A.; Kornblum, H. I.; Ahluwalia, M. S.; Vogelbaum, M. A.; Lathia, J.

10.1101/655688 — clinical trials — Posted on 2019-05-31

94 Integrated meditation and exercise therapy: A randomized controlled trial of a combined non-pharmacological intervention reduces disability and pain in patients with chronic low back pain

Polaski, A. M.; Phelps, A. L.; Smith, T. J.; Helm, E. R.; Morone, N. E.; Szucs, K. A.; Kostek, M. C.; Kolber, B. J.

10.1101/652735 — clinical trials — Posted on 2019-05-31

95 The onset time of balance control during walking is phase-independent, but the magnitude of the response is not

Reimann, H.; Fettrow, T.; Grenet, D.; Thompson, E. D.; Jeka, J. J.

10.1101/655928 — neuroscience — Posted on 2019-05-31

96 Timescales of spontaneous activity fluctuations relate to structural connectivity in the brain

Fallon, J.; Ward, P.; Parkes, L.; Oldham, S.; Arnatkeviciute, A.; Fornito, A.; Fulcher, B. D.

10.1101/655050 — neuroscience — Posted on 2019-05-31

97 The Avocado Genome Informs Deep Angiosperm Phylogeny, Highlights Introgressive Hybridization, and Reveals Pathogen Influenced Gene Space Adaptation

Rendon-Anaya, M.; Ibarra-Laclette, E.; Mendez Bravo, A.; Lan, T.; Zheng, C.; Carretero-Paulet, L.; Perez-Torres, C. A.; Chacon-Lopez, A.; Hernandez-Guzman, G.; Chang, T.-H.; Farr, K.; Barbazuk, W. B.; Chamala, S.; Mutwil, M.; Shivhare, D.; Mitter, N.; Hayward, A.; Fletcher, S.; Rozas, J. B.; Sanchez Gracia, A.; Kuhn, D.; Barrientos-Priego, A. F.; Salojarvi, J.; Librado, P.; Sankoff, D.; Herrera-Estrella, A. B.; Albert, V. A.; Herrera-Estrella, L.

10.1101/654285 — genomics — Posted on 2019-05-31

98 Development and External Validation of the Acute COPD Exacerbation Prediction Tool (ACCEPT)

Adibi, A.; Sin, D. D.; Safari, A.; Johnson, K. M.; Aaron, S.; FitzGerald, J. M.; Sadatsafavi, M.

10.1101/651901 — epidemiology — Posted on 2019-05-31

99 11β-Hydroxysteroid Dehydrogenase Type 1 inhibition in Idiopathic Intracranial Hypertension: a double-blind randomized controlled trial.

Markey, K. A.; Matthews, T.; Mitchell, J.; Botfield, H.; Ottridge, R.; Krishnan, A.; Woolley, R. L.; Westgate, C.; Yiangou, A.; Shah, P.; Rick, C.; Ives, N. J.; Taylor, A.; Gilligan, L.; Jenkinson, C.; Arlt, W.; Scotton, W.; Fairclough, R.; Singal, R.; Stewart, P.; Tomlinson, J. W.; Lavery, G. G.; Mollan, S.; Sinclair, A. J.

10.1101/648410 — clinical trials — Posted on 2019-05-31

100 PPPred: Classifying Protein-phenotype Co-mentions Extracted from Biomedical Literature

Pourreza Shahri, M.; Reynolds, G.; Roe, M. M.; Kahanda, I.

10.1101/654475 — bioinformatics — Posted on 2019-05-31

101 Modeling pupil responses to rapid sequential events

Denison, R. N.; Parker, J. A.; Carrasco, M.

10.1101/655902 — neuroscience — Posted on 2019-05-31

102 Metagenomic exploration of viral diversity and virus-host interactions in a deep freshwater lake

Okazaki, Y.; Nishimura, Y.; Yoshida, T.; Ogata, H.; Nakano, S.-i.

10.1101/655167 — microbiology — Posted on 2019-05-31

103 Epithelial ovarian cancer and schizophrenia and schizophrenia on circulating glycerophosphocholine metabolites: a Mendelian randomization study

Adams, C. D.; Neuhausen, S. L.

10.1101/655894 — genetics — Posted on 2019-05-31

104 Evaluating sepsis definitions for clinical decision support against a definition for epidemiological disease surveillance

Lin, A.; Sendak, M.; Bedoya, A.; Clement, M.; Brajer, N.; Futoma, J.; Bosworth, H.; Heller, K.; O'Brien, C.

10.1101/648907 — epidemiology — Posted on 2019-05-31

105 A Protein Kinase A-Regulated Network Encodes Short- and Long-Lived Cellular Memory

Jiang, Y.; AkhavanAghdam, Z.; Li, Y.; Zid, B. M.; Hao, N.

10.1101/656009 — systems biology — Posted on 2019-05-31

106 Trapped ion mobility spectrometry (TIMS) and parallel accumulation - serial fragmentation (PASEF) enable in-depth lipidomics from minimal sample amounts

Vasilopoulou, C. G.; Sulek, K.; Brunner, A.-D.; Meitei, N. S.; Schweiger-Hufnagel, U.; Meyer, S. W.; Barsch, A.; Mann, M.; Meier, F.

10.1101/654491 — systems biology — Posted on 2019-05-31

107 Cocaine experience abolishes the motivation suppressing effect of CRF in the ventral midbrain

Oliva, I.; Donate, M. M.; Lefner, M. J.; Wanat, M.

10.1101/655936 — neuroscience — Posted on 2019-05-31

108 Quadruplex qPCR for qualitative and quantitative analysis of the HIV-1 latent reservoir

Gaebler, C.; Cetrulo Lorenzi, J. C.; Oliveira, T. Y.; Nogueira, L.; Ramos, V.; Lu, C.-L.; Pai, J. A.; Mendoza, P.; Jankovic, M.; Caskey, M.; Nussenzweig, M. C.

10.1101/641951 — clinical trials — Posted on 2019-05-31

109 The human gut virome database

Gregory, A.; Zablocki, O.; Howell, A.; Bolduc, B.; Sullivan, M. B.

10.1101/655910 — bioinformatics — Posted on 2019-05-31

110 Overarching principles and dimensions of the functional organisation in the inferior parietal cortex

Humphreys, G. F.; Jackson, R. L.; Lambon Ralph, M. A.

10.1101/654178 — neuroscience — Posted on 2019-05-31

111 Enzymatic degradation of biofilm by metalloprotease from Microbacterium sp. SKS10

Saggu, S. K.; Jha, G.; Mishra, P. C.

10.1101/655092 — microbiology — Posted on 2019-05-31

112 An ancestral informative marker panel design for individual ancestry estimation of Hispanic population using whole exome sequencing data

Wang, L.-J.; Zhang, C. W.; Su, S. C.; Chen, H.-I. H.; Chiu, Y.-C.; Lai, Z.; Bouamar, H.; Ramirez, A. G.; Cigarroa, F. G.; Sun, L.-Z.; Chen, Y.

10.1101/654939 — bioinformatics — Posted on 2019-05-31

113 Variant Phasing and Haplotypic Expression from Single-molecule Long-read Sequencing in Maize

Wang, B.; Tseng, E.; Baybayan, P.; Eng, K.; Regulski, M.; Jiao, Y.; Wang, L.; Olson, A.; Chougule, K.; Van Buren, P.; Ware, D.

10.1101/654533 — bioinformatics — Posted on 2019-05-31

114 Microbiome data enhances predictive models of lung function in people with CF

Zhao, C. Y.; Hao, Y.; Wang, Y.; Varga, J. J.; Stecenko, A. A.; Goldberg, J. B.; Brown, S. P.

10.1101/656066 — bioinformatics — Posted on 2019-05-31

115 Reading Increases the Compositionality of Visual Word Representations

Agrawal, A.; Hari, K.; Arun, S. P.

10.1101/653956 — neuroscience — Posted on 2019-05-31

116 Human Auditory Ossicles as an Alternative Optimal Source of Ancient DNA

Sirak, K. A.; Fernandes, D. M.; Cheronet, O.; Harney, E.; Mah, M.; Mallick, S.; Rohland, N.; Adamski, N.; Broomandkhoshbacht, N.; Callan, K.; Candilio, F.; Lawson, A. M.; Mandl, K.; Oppenheimer, J.; Stewardson, K.; Zalzala, F.; Anders, A.; Bartik, J.; Coppa, A.; Tumen, D.; Evinger, S.; Farkas, Z.; Hajdu, T.; Bayarsaikhan, J.; McIntyre, L.; Moiseyev, V.; Pap, I.; Pietrusewsky, M.; Raczky, P.; Sefcakova, A.; Soficaru, A.; Szeniczey, T.; Szoke, B. M.; Tuvshinjargal, T.; Van Gerven, D.; Vasilyev, S.; Bell, L.; Reich, D.; Pinhasi, R.

10.1101/654749 — genomics — Posted on 2019-05-31

117 Immune disease variants modulate gene expression in regulatory CD4+ T cells and inform drug targets

Bossini-Castillo, L.; Glinos, D. A.; Kunowska, N.; Golda, G.; Lamikanra, A.; Spitzer, M.; Soskic, B.; Cano-Gamez, E.; Smyth, D. J.; Cattermole, C.; Alasoo, K.; Mann, A.; Kundu, K.; Soranzo, N.; Dunham, I.; Roberts, D.; Trynka, G.

10.1101/654632 — genetics — Posted on 2019-05-31

118 VSEPRnet: Physical structure encoding of sequence-based biomolecules for functionality prediction: Case study with peptides

Rath, S. S.; Francis-Landau, J. S.; Lu, X.; Rodriguez, J. S.; Nakano-Baker, O.; Ustundag, B. B.; Sarikaya, M.

10.1101/656033 — bioinformatics — Posted on 2019-05-31

119 Viral and bacterial infection elicit distinct changes in plasma lipids in febrile children

Wang, X.; Nijman, R.; Camuzeaux, S.; Sands, C.; Jackson, H.; Kaforou, M.; Emonts, M.; Herberg, J.; Maconochie, I.; Carrol, E.; Paulus, S.; Zenz, W.; Van der Flier, M.; deGroot, R.; Martinon-Torres, F.; Schlapbach, L.; Pollard, A. J.; Fink, C.; Kuijpers, T. W.; Anderson, S. T.; Lewis, M.; Levin, M.; McClure, M.

10.1101/655704 — systems biology — Posted on 2019-05-31

120 Time of day is associated with paradoxical reductions in global signal fluctuation and functional connectivity

Orban, C.; Kong, R.; Li, J.; Chee, M. W. L.; Yeo, B. T. T.

10.1101/653899 — neuroscience — Posted on 2019-05-31

121 Brain-synthesized estrogens regulate cortical migration in a sexually divergent manner

Sellers, K.; Denley, M. C.; Saito, A.; Kamiya, A.; Srivastava, D. P.

10.1101/654731 — neuroscience — Posted on 2019-05-31

122 Neuron Geometry Underlies a Universal Local Architecture in Neuronal Networks

Gal, E.; Perin, R.; Markram, H.; London, M.; Segev, I.

10.1101/656058 — neuroscience — Posted on 2019-05-31

123 Codon Pairs are Phylogenetically Conserved: Codon pairing as a new class of phylogenetic characters

Miller, J. B.; McKinnon, L.; Whiting, M.; Ridge, P. G.

10.1101/654947 — evolutionary biology — Posted on 2019-05-31

124 Tissue Engineered Axon Tracts Serve as Living Scaffolds to Accelerate Axonal Regeneration and Functional Recovery Following Peripheral Nerve Injury in Rats

Katiyar, K.; Struzyna, L. A.; Morand, J. P.; Burrell, J. C.; Clements, B.; Laimo, F. A.; Browne, K. D.; Kohn, J.; Ali, Z.; Ledebur, H. C.; Smith, D. H.; Cullen, D. K.

10.1101/654723 — bioengineering — Posted on 2019-05-31

125 Saving Old Bones: a non-destructive method for bone collagen prescreening

Sponheimer, M.; Ryder, C. M.; Fewlass, H.; Smith, E. K.; Pestle, W. J.; Talamo, S.

10.1101/653212 — paleontology — Posted on 2019-05-31

126 Characterizing and comparing phylogenetic trait data from their normalized Laplacian spectrum

Lewitus, E.; Aristide, L.; Morlon, H.

10.1101/654087 — evolutionary biology — Posted on 2019-05-31

127 Trans-omic analysis reveals allosteric and gene regulation-axes for altered glucose-responsive liver metabolism associated with obesity

Kokaji, T.; Hatano, A.; Ito, Y.; Yugi, K.; Eto, M.; Ohno, S.; Fujii, M.; Hironaka, K.-i.; Egami, R.; Inoue, H.; Uda, S.; Kubota, H.; Suzuki, Y.; Ikeda, K.; Arita, M.; Matsumoto, M.; Nakayama, K. I.; Hirayama, A.; Soga, T.; Kuroda, S.

10.1101/653758 — systems biology — Posted on 2019-05-31

128 Circadian time series proteomics reveals daily dynamics in cartilage physiology

Dudek, M.; Angelucci, C.; Ruckshanthi, J. P.; Wang, P.; Mallikarjun, V.; Lawless, C.; Kadler, K. E.; Hoyland, J. A.; Lamande, S. R.; Bateman, J. F.; Meng, Q.-J.

10.1101/654855 — physiology — Posted on 2019-05-31

129 7 Tesla MRI of the ex vivo human brain at 100 micron resolution

Edlow, B. L.; Mareyam, A.; Horn, A. L.; Polimeni, J.; Tisdall, M. D.; Augustinack, J.; Stockman, J. P.; Diamond, B. R.; Stevens, A.; Tirrell, L. S.; Folkerth, R. D.; Wald, L. L.; Fischl, B.; van der Kouwe, A.

10.1101/649822 — neuroscience — Posted on 2019-05-31

130 The genomic landscape of clonal hematopoiesis in Japan

Terao, C.; Suzuki, A.; Momozawa, Y.; Akiyama, M.; Ishigaki, K.; Yamamoto, K.; Matsuda, K.; Murakami, Y.; McCarroll, S. A.; Kubo, M.; Loh, P.-R.; Kamatani, Y.

10.1101/653733 — genetics — Posted on 2019-05-31

131 Sensitive detection of circular DNA at single-nucleotide resolution using guided realignment of partially aligned reads

Prada-Luengo, I.; Krogh, A.; Maretty, L.; Regenberg, B.

10.1101/654194 — bioinformatics — Posted on 2019-05-31

132 Rapid learning and unlearning of predicted sensory delays in self-generated touch

Kilteni, K.; Houborg, C.; Ehrsson, H. H.

10.1101/653923 — neuroscience — Posted on 2019-05-31

133 Neglectful maternal caregiving involves altered brain plasticity in empathy-related areas

Rodrigo, M. J.; Leon, I.; Garcia-Penton, L.; Hernandez-Cabrera, J. A.; Quinones, I.

10.1101/654434 — neuroscience — Posted on 2019-05-31

134 Characterization of the untranslated region of lymphocytic choriomeningitis virus S segment

Taniguchi, S.; Yoshikawa, T.; Shimojima, M.; Fukushi, S.; Kurosu, T.; Tani, H.; Fukuma, A.; Kato, F.; Nakayama, E.; Maeki, T.; Tajima, S.; Lim, C.-K.; Ebihara, H.; Kyuwa, S.; Morikawa, S.; Saijo, M.

10.1101/653808 — microbiology — Posted on 2019-05-31

135 A B-cell acute lymphoblastic leukemia regulatory network defines novel therapeutic targets in IGH-CRLF2 patients

Badri, S.; Carella, B.; Lhoumaud, P.; Castro, D. M.; Raviram, R.; Watters, A.; Bonneau, R. M.; Skok, J. A.

10.1101/654418 — genomics — Posted on 2019-05-31

136 Influence of genetic variants on gene expression in human pancreatic islets - implications for type 2 diabetes

Vinuela, A.; Varshney, A.; Bunt, M. v. d.; Prasad, R. B.; Asplund, O. B.; Bennett, A.; Boehnke, M. B.; Brown, A. A.; Erdos, M. R.; Fadista, J.; Hansson, O.; Hatem, G.; Howald, C.; Iyengar, A. K.; Johnson, P.; Krus, U.; MacDonald, P. E.; Mahajan, A. E.; Manning Fox, J. E.; Narisu, N.; Nylander, V.; Orchard, P. E.; Oskolkov, N.; Panousis, N. I.; Payne, A.; Stitzel, M. L.; Vadlamudi, S.; Welch, R.; Collins, F. S.; Mohlke, K. L.; Gloyn, A. L.; Scott, L. L.; Dermitzakis, E. L.; Groop, L. L.; Parker, S. C.; McCarthy, M. L.

10.1101/655670 — genomics — Posted on 2019-05-31

137 Defects in mating behavior are the primary cause of sterility in C. elegans males at elevated temperature

Nett, E. M.; Sepulveda, N. B.; Petrella, L. N.

10.1101/655027 — genetics — Posted on 2019-05-31

138 Mitonuclear interactions influence Alzheimer’s disease risk

Andrews, S. J.; Fulton-Howard, B.; Patterson, C.; McFall, G. P.; Gross, A.; Michaelis, E. K.; Goate, A. M. J.; Swerdlow, R. H.; Pa, J.; the Alzheimers Disease Neuroimaging Initiative,

10.1101/654400 — genetics — Posted on 2019-05-31

139 GIP: A Gene network-based integrative approach for Inferring disease-associated signaling Pathways

Chen, X.

10.1101/654780 — bioinformatics — Posted on 2019-05-31

140 A many-to-one sensory circuit encodes oxygen levels and drives respiratory behaviour in Danio rerio

Yeh, C. M.; Pao, G. M.; Villa-Real, R.; Rosales, K.; DePasquale, E.; Groisman, A.; Chalasani, S. H.

10.1101/655084 — neuroscience — Posted on 2019-05-31

141 Distinct effects of amyloid and tau deposition on eigenvector centrality during hippocampal down-regulation: a real-time fMRI virtual reality closed-loop neurofeedback study with CSF biomarkers

Skouras, S.; Torner, J.; Andersson, P.; Koush, Y.; Falcon, C.; Minguillon, C.; Fauria, K.; Alpiste, F.; Blennow, K.; Zetterberg, H.; Gispert, J. D.; Molinuevo, J. L.; Alfa Study,

10.1101/654426 — neuroscience — Posted on 2019-05-31

142 Statistical learning attenuates visual activity only for attended stimuli

Richter, D.; de Lange, F. P.

10.1101/653782 — neuroscience — Posted on 2019-05-31

143 Reverse engineering neural networks to characterise their cost functions

Isomura, T.; Friston, K. J.

10.1101/654467 — neuroscience — Posted on 2019-05-31

144 A unity of opposites in between Nrf1- and Nrf2-mediated responses to the endoplasmic reticulum stressor tunicamycin

Zhu, Y.-p.; Hu, S.; Ru, X.; Zheng, Z.; Fan, Z.; Qiu, L.; Zhang, Y.

10.1101/655159 — molecular biology — Posted on 2019-05-31

145 The rodent vaginal microbiome across the estrous cycle and the effect of genital nerve electrical stimulation

Levy, M.; Bassis, C.; Kennedy, E.; Yoest, K. E.; Becker, J. B.; Bell, J.; Berger, M. B.; Bruns, T. M.

10.1101/647545 — microbiology — Posted on 2019-05-31

146 Natural transposable element insertions drive expression changes in genes underlying Drosophila immune response

Ullastres, A.; Merenciano, M.; Gonzalez, J.

10.1101/655225 — evolutionary biology — Posted on 2019-05-31

147 Optimizing functional groups in ecosystem models: Case study of the Great Barrier Reef

Haller-Bull, V.; Rovenskaya, E.

10.1101/655076 — ecology — Posted on 2019-05-31

148 The Impact of Pathway Database Choice on Statistical Enrichment Analysis and Predictive Modeling

Mubeen, S.; Hoyt, C. T.; Gemünd, A.; Hofmann-Apitius, M.; Fröhlich, H.; Domingo-Fernandez, D.

10.1101/654442 — bioinformatics — Posted on 2019-05-31

149 Deep learning does not outperform classical machine learning for cell-type annotation

Köhler, N. D.; Büttner, M.; Theis, F. J.

10.1101/653907 — bioinformatics — Posted on 2019-05-31

150 Genomic diversity affects the accuracy of bacterial SNP calling pipelines

Bush, S. J.; Foster, D.; Eyre, D. W.; Clark, E. L.; De Maio, N.; Shaw, L. P.; Stoesser, N.; Peto, T. E. A.; Crook, D. W.; Walker, A. S.

10.1101/653774 — bioinformatics — Posted on 2019-05-31

151 A Compositional Model To Assess Expression Changes From Single-Cell RNA-Seq Data

Ma, X.; Korthauer, K.; Kendziorski, C.; Newton, M. A.

10.1101/655795 — bioinformatics — Posted on 2019-05-31

152 An Automated 3D Analysis Framework for Optical Coherence Tomography Angiography

Sarabi, M. S.; Gahm, J. K.; Khansari, M. M.; Zhang, J.; Kashani, A. H.; Shi, Y.

10.1101/655175 — bioengineering — Posted on 2019-05-31

153 Fully Interpretable Deep Learning Model of Transcriptional Control

Liu, Y.; Barr, K.; Reinitz, J.

10.1101/655639 — systems biology — Posted on 2019-05-31

154 (p)ppGpp and CodY promote Enterococcus faecalis virulence in a murine model of catheter-associated urinary tract infection

Colomer-Winter, C.; Flores-Mireles, A. L.; Kundra, S.; Hultgren, S. J.; Lemos, J. A.

10.1101/655118 — microbiology — Posted on 2019-05-31

155 Stringent Response Governs the Virulence and Oxidative Stress Resistance of Francisella tularensis

Ma, Z.; King, K.; Alqahtani, M.; Worden, M.; Muthuraman, P.; Cioffi, C.; Bakshi, C. S.; Malik, M.

10.1101/653790 — microbiology — Posted on 2019-05-31

156 Development of copy number assays for detection and surveillance of piperaquine resistance-associated plasmepsin 2/3 copy number variation in Plasmodium falciparum

Jacob, C. G.; Ansbro, M. R.; Amato, R. G.; Kekre, M.; Vongpromek, R.; Dhorda, M.; Amaratunga, C.; Sreng, S.; Suon, S.; Miotto, O.; Fairhurst, R. M.; Wellems, T. G.; Kwiatkowski, D. P.

10.1101/655209 — genetics — Posted on 2019-05-31

157 Recombination detected in the Heat Shock Protein 90 (HSP90) of the Bemisia tabaci species complex

Kinene, T.; De Marchi, B. R.; Luboobi, L. S. M.; Alicai, T.; Omongo, C.; Savill, A.; Boykin, L. M.

10.1101/655233 — evolutionary biology — Posted on 2019-05-31

158 Production of interspecies somatic/pluripotent heterokaryons using polyethylene glycol (PEG) and selection by imaging flow cytometry for the study of nuclear reprogramming.

Villafranca, M. C.; Eyestone, W. H.; Jensen, R. V.; Makris, M. R.; Garrido Bauerle, M. J.

10.1101/655621 — cell biology — Posted on 2019-05-31

159 Assemblies of F-actin and myosin-II minifilaments: steric hindrance and stratification at the membrane cortex

Das, A.; Bhat, A.; Sknepnek, R.; Koester, D. V.; Mayor, S.; Rao, M.

10.1101/656082 — cell biology — Posted on 2019-05-31

160 Probing mechanisms of transcription elongation through cell-to-cell variability of RNA polymerase

Ali, M. Z.; Choubey, S.; Das, D.; Brewster, R.

10.1101/655712 — cell biology — Posted on 2019-05-31

161 Serum Alpha-2-Macroglobulin as an intrinsic radioprotective factor in patients undergoing thoracic radiation therapy

von Reibnitz, D.; Yorke, E.; Oh, J. H.; Apte, A.; Yang, J.; Pham, H.; Thor, M.; Wu, A.; Fleisher, M.; Gelb, E.; Deasy, J.; Rimner, A.

10.1101/656090 — cancer biology — Posted on 2019-05-31

162 Neutrophils promote CXCR3-dependent itch in the development of atopic dermatitis

Walsh, C. M.; Hill, R. Z.; Schwendinger-Schreck, J.; Deguine, J.; Brock, E. C.; Kucirek, N.; Rifi, Z.; Wei, J.; Gronert, K.; Brem, R. B.; Barton, G. M.; Bautista, D. M.

10.1101/653873 — immunology — Posted on 2019-05-31

163 Dual Role of Jam3b in Early Hematopoietic and Vascular Development

Kobayashi, I.; Kobayashi-Sun, J.; Hirakawa, Y.; Ouchi, M.; Yasuda, K.; Kamei, H.; Fukuhara, S.; Yamaguchi, M.

10.1101/656108 — developmental biology — Posted on 2019-05-31

164 Let-7 miRNAs control auditory sensory progenitor behavior in the vertebrate inner ear

Evsen, L.; Zhang, S.; Doetzlhofer, A.

10.1101/655993 — developmental biology — Posted on 2019-05-31

165 Cohesin promotes interactions across domain boundaries to regulate gene expression

Luppino, J.; Nguyen, S.; Park, D.; Lan, Y.; Xu, Z.; Joyce, E.

10.1101/649335 — cell biology — Posted on 2019-05-31

166 IF3 licenses newly made 30S subunits for translation during stress

Sharma, I. M.; Woodson, S. A.

10.1101/655696 — biochemistry — Posted on 2019-05-31

167 Conservation and Divergence of Related Neuronal Lineages in the Drosophila Central Brain

Lee, Y.-J.; Yang, C.-P.; Huang, Y.-F.; He, Y.; Ren, Q.; Chen, H.-M.; Miyares, R. L.; Otsuna, H.; Aso, Y.; Ito, K.; Lee, T.

10.1101/656017 — developmental biology — Posted on 2019-05-30

168 Mesenchymal-Epithelial Transition Regulates Initiation of Pluripotency Exit before Gastrulation

Hamidi, S.; Nakaya, Y.; Nagai, H.; Alev, C.; Kasukawa, T.; Chhabra, S.; Lee, R.; Niwa, H.; Warmflash, A.; Shibata, T.; Sheng, G.

10.1101/655654 — developmental biology — Posted on 2019-05-30

169 Ventral Pallidum is Essential for Cocaine Reinstatement After Voluntary Abstinence

Farrell, M. R.; Ruiz, C. M.; Castillo, E.; Faget, L.; Khanbijian, C.; Liu, S.; Schoch, H.; Rojas, G.; Hnasko, T. S.; Mahler, S. V.

10.1101/653741 — neuroscience — Posted on 2019-05-30

170 Scribble and Discs-large direct adherens junction positioning and supermolecular assembly to establish apical-basal polarity

Bonello, T.; Peifer, M.

10.1101/654509 — developmental biology — Posted on 2019-05-30

171 Dynamic free energy landscape of a linear motor chitinase from single-particle tracking trajectories

Okazaki, K.-i.; Nakamura, A.; Iino, R.

10.1101/655878 — biophysics — Posted on 2019-05-30

172 Molecular Determinants of μ-Conotoxin KIIIA interaction with the Voltage-Gated Sodium Channel Nav1.7

Kimball, I. H.; Nguyen, P. T.; Olivera, B. M.; Sack, J. T.; Yarov-Yarovoy, V.

10.1101/654889 — biophysics — Posted on 2019-05-30

173 Repurposing a macromolecular machine: Architecture and evolution of the F7 chemosensory system

Ortega, D. R.; Subramanian, P.; Mann, P.; Kjaer, A.; Chen, S.; Watts, K. J.; Pirbadian, S.; Collins, D. A.; Kooger, R.; Kalyuzhnaya, M. G.; Ringgaard, S.; Briegel, A.; Jensen, G. J.

10.1101/653600 — microbiology — Posted on 2019-05-30

174 SEQdata-BEACON: a comprehensive database of sequencing performance and statistical tools for performance evaluation and yield simulation in BGISEQ-500

Liu, C.; Zhou, R.; Zhou, Y.; Lu, A.; Huang, B.; Liu, L.; Chen, L.; Luo, B.; Huang, J.; Tian, Z.

10.1101/652347 — bioinformatics — Posted on 2019-05-30

175 Deep spectral learning for label-free optical imaging oximetry with uncertainty quantification

Liu, R.; Cheng, S.; Tian, L.; Yi, J.

10.1101/650259 — bioengineering — Posted on 2019-05-30

176 Deep learning enables therapeutic antibody optimization in mammalian cells by deciphering high-dimensional protein sequence space

Mason, D. M.; Friedensohn, S.; Weber, C. R.; Jordi, C.; Wagner, B.; Meng, S.; Gainza, P.; Correia, B.; Reddy, S. T.

10.1101/617860 — synthetic biology — Posted on 2019-05-30

177 The parallel auditory brainstem response

Polonenko, M. J.; Maddox, R. K.

10.1101/648659 — neuroscience — Posted on 2019-05-30

178 Distinct molecular etiologies of male and female hepatocellular carcinoma

Natri, H. M.; Wilson, M.; Buetow, K.

10.1101/507939 — genomics — Posted on 2019-05-30

179 The first functional characterization of ancient interleukin-15-like (IL-15L) reveals shared and distinct functions of the IL-2, -15 and -15L family cytokines

Yamaguchi, T.; Karger, A.; Keller, M.; Wangkahart, E.; Wang, T.; Secombes, C. J.; Kimoto, A.; Furihata, M.; Hashimoto, K.; Fischer, U.; Dijkstra, J. M.

10.1101/644955 — evolutionary biology — Posted on 2019-05-30

180 A possible role for epigenetic feedback regulation in the dynamics of the Epithelial-Mesenchymal Transition (EMT)

Jia, W.; Deshmukh, A.; Mani, S. A.; Jolly, M. K.; Levine, H.

10.1101/651620 — biophysics — Posted on 2019-05-30

181 phylogenize: correcting for phylogeny reveals genes associated with microbial distributions

Bradley, P. H.; Pollard, K. S.

10.1101/425231 — bioinformatics — Posted on 2019-05-30

182 Cooperation and spatial self-organization determine ecosystem function for polysaccharide-degrading bacteria

Ebrahimi, A.; Schwartzman, J. A.; Cordero, O. X.

10.1101/640961 — ecology — Posted on 2019-05-30

183 Allosteric modulation of local reactivity in DNA origami

Suma, A.; Stopar, A.; Nicholson, A. W.; Castronovo, M.; Carnevale, V.

10.1101/640847 — biophysics — Posted on 2019-05-30

184 Genome-Wide Association Study of Brain Connectivity Changes for Alzheimer’s Disease

Elsheikh, S. S. M.; Chimusa, E. R.; Mulder, N. J.; Crimi, A.

10.1101/342436 — bioinformatics — Posted on 2019-05-30

185 The Crk adapter protein is essential for Drosophila embryogenesis, where it regulates multiple actin-dependent morphogenic events

Spracklen, A.; Thornton-Kolbe, E.; Bonner, A.; Florea, A.; Compton, P.; Fernandez-Gonzalez, R.; Peifer, M.

10.1101/654558 — cell biology — Posted on 2019-05-30

186 Novel inducers of the expression of multidrug efflux pumps that trigger Pseudomonas aeruginosa transient antibiotic resistance

Laborda, P.; Alcalde-Rico, M.; Blanco, P.; Martinez, J. L.; Hernando-Amado, S.

10.1101/655126 — microbiology — Posted on 2019-05-30

187 A slight decrease in serum albumin level is associated with rapid progression of kidney dysfunction even within the normal range: The Yuport Health Checkup Center Cohort Study

Terawaki, H.; Amano, H.; Yoshimura, K.; Iijima, R.; Waki, K.; Matsumoto, K.; Ueda, H.; Ito, Y.; Miyamoto, K.; Akimoto, K.; Yokoo, T.; Inoue, K.

10.1101/655563 — epidemiology — Posted on 2019-05-30

188 Using a collaborative data collection method to update life-history values for snapper and grouper in Indonesia’s deep-slope demersal fishery

Wibisono, E.; Mous, P. J.; Humphries, A.

10.1101/655571 — ecology — Posted on 2019-05-30

189 VGLUT2/ Cdk5/p25 Signaling Pathway Contributed to Inflammatory Pain By CFA

Tang, Y.; Peng, Z.; Tao, S.; Sun, J.; Wang, W.; Guo, X.; Liu, G.; Luo, X.; Chen, Y.; Shen, Y.; Ma, H.; Xu, P.; Li, Q. H.; Zhang, H.; Feng, Z.

10.1101/655498 — neuroscience — Posted on 2019-05-30

190 Mucin O-glycans facilitate symbiosynthesis to maintain gut immune homeostasis

Yamada, T.; Hino, S.; Iijima, H.; Genda, T.; Aoki, R.; Nagata, R.; Han, H.; Hirota, M.; Kinashi, Y.; Oguchi, H.; Suda, W.; Furusawa, Y.; Fujimura, Y.; Kunisawa, J.; Hattori, M.; Fukushima, M.; Morita, T.; Hase, K.

10.1101/655597 — microbiology — Posted on 2019-05-30

191 Hepatitis C virus regulates its replication by maturing miR-122 through Akt-dependent phosphorylation of KSRP

Baudesson, C.; Amadori, C.; Danso, H.; Donati, F.; Nevers, Q.; Durand, T.; Lemasson, M.; Rosenberg, A. R.; Trabucchi, M.; Ahmed-Belkacem, A.; Bruscella, P.; Pawlotsky, J.-M.; Feray, C.

10.1101/654392 — microbiology — Posted on 2019-05-30

192 Genome sequence of the model rice variety KitaakeX

Jain, R.; Jenkins, J.; Shu, S.; Chern, M.; Martin, J. A.; Copetti, D.; Duong, P. Q.; Pham, N. T.; Kudrna, D. A.; Talag, J.; Schackwitz, W. S.; Lipzen, A. M.; Dilworth, D.; Bauer, D.; Grimwood, J.; Nelson, C. R.; Xing, F.; Xie, W.; Barry, K. W.; Wing, R. A.; Schmutz, J.; Li, G.; Ronald, P. C.

10.1101/653089 — genomics — Posted on 2019-05-30

193 WNT4 and WNT3A activate cell autonomous Wnt signaling independent of PORCN or secretion

Rao, D. M.; Bordeaux, E. K.; Yamamoto, T. M.; Bitler, B. G.; Sikora, M. J.

10.1101/333906 — cell biology — Posted on 2019-05-30

194 Structural characterization of covalently stabilized human cystatin C oligomers

Chrabaszczewska, M.; Rodziewicz-Motowidło, S.; Grubb, A.; Dobson, C. M.; Kumita, J. R.; Kozak, M.

10.1101/654772 — biophysics — Posted on 2019-05-30

195 Untangling the Relatedness among Correlations, Part III: Inter-Subject Correlation Analysis through Bayesian Multilevel Modeling for Naturalistic Scanning

Chen, G.; Taylor, P. A.; Qu, X.; Molfese, P. J.; Bandettini, P. A.; Cox, R. W.; Finn, E. S.

10.1101/655738 — neuroscience — Posted on 2019-05-30

196 Identifying predictors of HPV-related head and neck squamous cell carcinoma progression and survival through patient-derived models

Facompre, N. D.; Rajagopalan, P.; Sahu, V.; Pearson, A. T.; Montone, K. T.; James, C. D.; Gleber-Netto, F. O.; Weinstein, G. S.; Jalaly, J.; Lin, A.; Rustgi, A. K.; Nakagawa, H.; Califano, J. A.; Pickering, C. R.; White, E. A.; Windle, B. A.; Morgan, I. M.; Cohen, R. B.; Gimotty, P. A.; Basu, D.

10.1101/652537 — cancer biology — Posted on 2019-05-30

197 Dynamic free energy landscape of a linear motor chitinase from single-particle tracking trajectories

Okazaki, K.-i.; Nakamura, A.; Iino, R.

10.1101/655878 — biophysics — Posted on 2019-05-30

198 Simultaneous Dual Optical Mapping of the Heart Using a Single Excitation, Single Camera Approach

Jaimes, R.; McCullough, D.; Siegel, B.; Swift, L.; Hiebert, J.; McInerney, D.; Posnack, N. G.

10.1101/651380 — bioengineering — Posted on 2019-05-30

199 SVCurator: A Crowdsourcing app to visualize evidence of structural variants for the human genome

Chapman, L. M.; Spies, N.; Pai, P.; Lim, C. S.; Carroll, A.; Narzisi, G.; Watson, C. M.; Proukakis, C.; Clarke, W. E.; Nariai, N.; Dawson, E.; Jones, G.; Blankenberg, D.; Brueffer, C.; Xiao, C.; Kolora, S. R. R.; Alexander, N.; Wolujewicz, P.; Ahmed, A.; Smith, G.; Shehreen, S.; Wenger, A. M.; Salit, M.; Zook, J. M.

10.1101/581264 — genomics — Posted on 2019-05-30

200 Inference based PICRUSt accuracy varies across sample types and functional categories

Sun, S.; Jones, R. B.; Fodor, A. A.

10.1101/655746 — bioinformatics — Posted on 2019-05-30

201 Dissociable roles for Anterior Cingulate Cortex and Basolateral Amygdala in Decision Confidence and Learning under Uncertainty

Stolyarova, A.; Rakhshan, M.; Hart, E. E.; O'Dell, T. J.; Peters, M. A.; Lau, H.; Soltani, A.; Izquierdo, A.

10.1101/655860 — neuroscience — Posted on 2019-05-30

202 High-throughput identification of genes involved in single and multi-drug resistance in pancreatic cancer with pooled CRISPR screening

Ramaker, R. C.; Hardigan, A. A.; Gordon, E. R.; Myers, R. M.; Cooper, S. J.

10.1101/648709 — genomics — Posted on 2019-05-30

203 High rate of sex chromosome turnover in muscid flies

Meisel, R.; Olafson, P.; Guerrero, F. D.; Konganti, K.; Benoit, J.

10.1101/655845 — evolutionary biology — Posted on 2019-05-30

204 Clinically-relevant cell type cross-talk identified from a human lung tumor microenvironment interactome

Gentles, A. J.; Hui, A.; Feng, W.; Azizi, A.; Nair, R.; Knowles, D.; Yu, A.; Jeong, Y.; Bejnood, A.; Forgo, E.; Varma, S.; Xu, Y.; Kuong, A.; Nair, V.; West, R.; Van de Rijn, M.; Hoang, C.; Diehn, M.; Plevritis, S.

10.1101/637306 — cancer biology — Posted on 2019-05-30

205 Reply to \"A discriminative learning approach to differential expression analysis for single-cell RNA-seq\"

Becht, E.; Zhao, E.; Amezquita, R. A.; Gottardo, R.

10.1101/648733 — bioinformatics — Posted on 2019-05-30

206 Humans can efficiently look for, but not select multiple visual objects

Ort, E.; Fahrenfort, J. J.; ten Cate, T.; Eimer, M.; Olivers, C. N. L.

10.1101/653030 — neuroscience — Posted on 2019-05-30

207 A compositional shape code explains how we read jumbled words

Agrawal, A.; Hari, K. V. S.; Arun, S. P.

10.1101/653048 — neuroscience — Posted on 2019-05-30

208 Combinatorial prediction of gene-marker panels from single-cell transcriptomic data.

Delaney, C.; Schnell, A.; Cammarata, L.; Yao-Smith, A.; Regev, A.; Kuchroo, V. K.; Singer, M.

10.1101/655753 — bioinformatics — Posted on 2019-05-30

209 Repetitive DNA content in the maize genome is uncoupled from population stratification at SNP loci

Renny-Byfield, S.; Baumgarten, A.

10.1101/652859 — plant biology — Posted on 2019-05-30

210 TractEM: Fast Protocols for Whole Brain Deterministic Tractography-Based White Matter Atlas

Bayrak, R. G.; Schilling, K. G.; Greer, J. M.; Hansen, C. B.; Greer, C. M.; Blaber, J. A.; Williams, O.; Beason-Held, L. L.; Resnick, S. M.; Rogers, B. P.; Landman, B. A.

10.1101/651935 — neuroscience — Posted on 2019-05-30

211 Using multiple reference genomes to identify and resolve annotation inconsistencies

Monnahan, P. J.; Michno, J.-M.; O'Connor, C. H.; Brohammer, A. B.; Springer, N. M.; McGaugh, S. E.; Hirsch, C. N.

10.1101/651984 — bioinformatics — Posted on 2019-05-30

212 High-content assay for precision medicine discovery in cystic fibrosis.

Prins, S.; Langron, E.; Hastings, C.; Hill, E.; Stefan, A. C.; Griffin, L. D.; Vergani, P.

10.1101/631614 — pharmacology and toxicology — Posted on 2019-05-30

213 Spread of pathological tau proteins through communicating neurons in human Alzheimer’s disease

Vogel, J.; Iturria-Medina, Y.; Strandberg, O. T.; Smith, R.; Evans, A. C.; Hansson, O.; the Alzheimer's Disease Neuroimaging Initiative, ; the Swedish BioFINDER Study,

10.1101/555821 — neuroscience — Posted on 2019-05-30

214 Neuronal Activity Enhances mRNA Localization to Myelin Sheaths During Development

Yergert, K.; Hines, J.; Appel, B.

10.1101/654616 — neuroscience — Posted on 2019-05-30

215 Intertwined Functions of Separase and Caspase in Cell Division and Programmed Cell Death

Jeong, P.-Y.; Kumar, A.; Joshi, P. M.; Rothman, J. H.

10.1101/653584 — genetics — Posted on 2019-05-30

216 Reticulon and CLIMP-63 regulate nanodomain organization of peripheral ER tubules

Gao, G.; Zhu, C.; Liu, E.; Nabi, I. R.

10.1101/550715 — cell biology — Posted on 2019-05-30

217 Ventral Pallidum is Essential for Cocaine Reinstatement After Voluntary Abstinence

Farrell, M. R.; Ruiz, C. M.; Castillo, E.; Faget, L.; Khanbijian, C.; Liu, S.; Schoch, H.; Rojas, G.; Hnasko, T. S.; Mahler, S. V.

10.1101/653741 — neuroscience — Posted on 2019-05-30

218 Gene-to-Protein-to-Disease: a segmentation-based approach to identify new cancer prognostic signatures of exome sequence variants

Li, G. X.; Munro, D.; Fermin, D.; Vogel, C.; Choi, H.

10.1101/653683 — genomics — Posted on 2019-05-30

219 Depth-resolved ultra-high field fMRI reveals feedback contributions to surface motion perception

Marquardt, I.; De Weerd, P.; Schneider, M.; Gulban, O. F.; Ivanov, D.; Uludag, K.

10.1101/653626 — neuroscience — Posted on 2019-05-30

220 SEQdata-BEACON: a comprehensive database of sequencing performance and statistical tools for performance evaluation and yield simulation in BGISEQ-500

Liu, C.; Zhou, R.; Zhou, Y.; Lu, A.; Huang, B.; Li, l.; Chen, L.; Luo, B.; Huang, J.; Tian, Z.

10.1101/652347 — bioinformatics — Posted on 2019-05-30

221 New kinship and FST estimates reveal higher levels of differentiation in the global human population

Ochoa, A.; Storey, J. D.

10.1101/653279 — genetics — Posted on 2019-05-30

222 Transparency, a better camouflage than crypsis in cryptically coloured moths

Arias, M.; Elias, M.; Andraud, C.; Berthier, S.; Gomez, D.

10.1101/655415 — evolutionary biology — Posted on 2019-05-30

223 Drivers of HIV-1 transmission: the Portuguese case

Pineda-Pena, A.; Pingarilho, M.; Li, G.; Vrancken, B.; Libin, P.; Gomes, P.; Camacho, R.; Theys, K.; Abecasis, A.; Portuguese HIV-1 Resistance Study Group,

10.1101/655514 — molecular biology — Posted on 2019-05-30

224 Discrete Community Assemblages Within Hypersaline Paleolake Sediments of Pilot Valley, Utah

Lynch, K.; Rey, K.; Bond, R.; Biddle, J.; Spear, J.; Rosenzweig, F.; Munakata Marr, J.

10.1101/634642 — microbiology — Posted on 2019-05-30

225 Patterns of annual and seasonal immune investment in a temporal reproductive opportunist

Schultz, E. M.; Gunning, C. E.; Cornelius, J. M.; Reichard, D. G.; Klasing, K. C.; Hahn, T. P.

10.1101/651158 — ecology — Posted on 2019-05-30

226 CRISPRpred(SEQ): a sequence based tool for sgRNA on target activity prediction

Rafid, H.; Toufikuzzaman, M.; Rahman, M. S.; Rahman, M. S.

10.1101/655779 — bioinformatics — Posted on 2019-05-30

227 Markov chains applied to molecular evolution simulation

Valdivia Ortega, J.

10.1101/653972 — genomics — Posted on 2019-05-30

228 Mutually exclusive autism mutations point to the circadian clock and PI3K signaling pathways

Manning, H.; O'Roak, B. J.; Babur, O.

10.1101/653527 — genetics — Posted on 2019-05-30

229 Interfacial energy constraints are sufficient to align cells over large distances

Tlili, S.; Shagirov, M.; Zhang, S.; Saunders, T. E.

10.1101/653535 — systems biology — Posted on 2019-05-30

230 Repurposing a macromolecular machine: Architecture and evolution of the F7 chemosensory system

Ortega, D. R.; Subramanian, P.; Mann, P.; Kjaer, A.; Chen, S.; Watts, K. J.; Pirbadian, S.; Collins, D. A.; Kooger, R.; Kalyuzhnaya, M. G.; Ringgaard, S.; Briegel, A.; Jensen, G. J.

10.1101/653600 — microbiology — Posted on 2019-05-30

231 Biogeographical patterns in soil bacterial communities across the Arctic region

Malard, L. A.; Anwar, M. Z.; Jacobsen, C. S. A.; Pearce, D. A.

10.1101/655431 — microbiology — Posted on 2019-05-30

232 Integrated Single-Cell Analysis of Multicellular Immune Dynamics during Hyper-Acute HIV-1 Infection

Kazer, S. W.; Aicher, T. P.; Muema, D. M.; Carroll, S. L.; Ordovas-Montanes, J.; Ziegler, C. G. K.; Nyquist, S. K.; Wong, E. B.; Ismail, N.; Dong, M.; Moodley, A.; Dong, K. L.; Ndhlovu, Z. M.; Ndung'u, T.; Walker, B. D.; Shalek, A. K.

10.1101/654814 — immunology — Posted on 2019-05-30

233 Unintended inhibition of protein function using GFP nanobodies in human cells

Kuey, C.; Larocque, G.; Clarke, N. I.; Royle, S. J.

10.1101/590984 — cell biology — Posted on 2019-05-30

234 Effective clustering for single cell sequencing cancer data

Ciccolella, S.; Patterson, M.; Bonizzoni, P.; Della Vedova, G.

10.1101/586545 — cancer biology — Posted on 2019-05-30

235 Stochastic semi-supervised learning to prioritise genes from high-throughput genomic screens

Vitsios, D.; Petrovski, S.

10.1101/655449 — bioinformatics — Posted on 2019-05-30

236 GATA3 mutation disrupts a functional network governed by estrogen receptor, FOXA1 and GATA3

Takaku, M.; Grimm, S. A.; Kumar, B. D.; Bennett, B. D.; Wade, P. A.

10.1101/654871 — genomics — Posted on 2019-05-30

237 DiADeM: differential analysis via dependency modelling of chromatin interactions with generalized linear models

Zaborowski, R.; Wilczynski, B.

10.1101/654699 — bioinformatics — Posted on 2019-05-30

238 Distinct oligodendrocyte populations have different spatial distribution and injury-specific responses

Floriddia, E. M.; Zhang, S.; van Bruggen, D.; Goncalves dos Santos, J. P.; Altinkok, M.; Castelo-Branco, G.

10.1101/580985 — neuroscience — Posted on 2019-05-30

239 Glutathione is Required for Efficient Post-Golgi Trafficking of Incoming HPV16 Genome

Li, S.; Bronnimann, M. P.; Williams, S. J.; Campos, S. K.

10.1101/655357 — microbiology — Posted on 2019-05-30

240 NMR-based analysis of nucleotide π-stacking in a crowded environment: Implications for prebiotic reactions

Bapat, N. V.; Paithankar, H.; Chugh, J.; Rajamani, S.

10.1101/655423 — biophysics — Posted on 2019-05-30

241 Multiplexable fluorescence lifetime imaging (FLIM) probes for Syk and Src-family kinases

Damayanti, N. P.; Jena, S.; Irudayaraj, J. M. K.; Parker, L. L.

10.1101/655407 — biochemistry — Posted on 2019-05-30

242 Mechanisms of convergent egg-provisioning in poison frogs

Fischer, E. K.; Roland, A. B.; Moskowitz, N. A.; Vidoudez, C.; Ranaivorazo, N.; Tapia, E. E.; Trauger, S. A.; Vences, M.; Coloma, L. A.; O'Connell, L. A.

10.1101/653501 — neuroscience — Posted on 2019-05-30

243 mPFC Spindle Cycles Organize Sparse Thalamic Activation and Recently Active CA1 cells During non-REM Sleep

Varela, C.; Wilson, M. A.

10.1101/653436 — neuroscience — Posted on 2019-05-30

244 Haptic metameric textures

Kuroki, S.; Sawayama, M.; Nishida, S.

10.1101/653550 — neuroscience — Posted on 2019-05-30

245 Investigating Transfusion-Related Sepsis using Culture-Independent Metagenomic Sequencing

Crawford, E. D.; Kamm, J.; Miller, S.; Li, L.; Caldera, S.; Lyden, A. D.; Yokoe, D.; Nichols, A.; Ramirez-Avila, L.; Tran, N. K.; Barnhard, S.; Conner, P. M.; Nambiar, A.; Zinter, M. S.; Moayeri, M.; Hayakawa Serpa, P.; Prince, B. C.; Quan, J.; Sit, R.; Tan, M.; Phelps, M.; DeRisi, J. S.; Tato, C. M.; Langelier, C.

10.1101/653337 — microbiology — Posted on 2019-05-30

246 Reward Predictive Representations Generalize Across Tasks in Reinforcement Learning

Lehnert, L.; Frank, M. J.; Littman, M. L.

10.1101/653493 — animal behavior and cognition — Posted on 2019-05-30

247 Spatial cell disparity in the colonial choanoflagellate Salpingoeca rosetta

Naumann, B.; Burkhardt, P.

10.1101/653519 — evolutionary biology — Posted on 2019-05-30

248 Neural evidence for age-related differences in representational quality and strategic retrieval processes

Trelle, A. N.; Henson, R. N.; Simons, J.

10.1101/333484 — neuroscience — Posted on 2019-05-30

249 Unexpected implications of STAT3 acetylation revealed by genetic encoding of acetyl-lysine

Belo, Y.; Mielko, Z.; Nudelman, H.; Afek, A.; Ben-David, O.; Shahar, A.; Zarivach, R.; Gordan, R.; Arbely, E.

10.1101/537696 — biochemistry — Posted on 2019-05-30

250 The subtle balance of insulin and thyroxine on survival and development of primordial follicles cultured in vitro enclosed in ovarian tissue

Paes, V. M.; Lima, L. F.; Ferreira, A.-C. A.; Lobo, C. H.; Alves, B. G.; Rodrigues, A.-P. R.; Oliveira, A. C.; Figueiredo, J. R.; Feugang, J.

10.1101/655589 — physiology — Posted on 2019-05-30

251 Transition scale-spaces: A computational theory for the discretized entorhinal cortex

Waniek, N.

10.1101/543801 — neuroscience — Posted on 2019-05-30

252 Molecular Determinants of μ-Conotoxin KIIIA interaction with the Voltage-Gated Sodium Channel Nav1.7

Kimball, I. H.; Nguen, P. T.; Olivera, B. M.; Sack, J. T.; Yarov-Yarovoy, V.

10.1101/654889 — biophysics — Posted on 2019-05-30

253 Impaired reliability and precision of spiking in adults but not juveniles in a mouse model of Fragile X Syndrome

Dwivedi, D.; Chattarji, S.; Bhalla, U.

10.1101/503714 — neuroscience — Posted on 2019-05-30

254 DNA double-strand breaks induced by reactive oxygenspecies promote DNA polymerase IV activity in Escherichia coli

Henrikus, S. S.; Henry, C.; McDonald, J. P.; Hellmich, Y.; Bruckbauer, S. T.; Cherry, M. E.; Wood, E. A.; Woodgate, R.; Cox, M. M.; van Oijen, A. M.; Ghodke, H.; Robinson, A.

10.1101/533422 — molecular biology — Posted on 2019-05-30

255 Large particle fluorescence-activated cell sorting enables high quality single cell RNA-sequencing and functional analysis of adult cardiomyocytes

Kannan, S.; Miyamoto, M.; Lin, B.; Zhu, R.; Murphy, S.; Kass, D.; Andersen, P.; Kwon, C.

10.1101/654954 — cell biology — Posted on 2019-05-30

256 Creating Standards for Evaluating Tumour Subclonal Reconstruction

Salcedo, A.; Tarabichi, M.; Espiritu, S. M. G.; Deshwar, A. G.; David, M.; Wilson, N. M.; Dentro, S.; Wintersinger, J. A.; Liu, L. Y.; Ko, M.; Sivanandan, S.; Zhang, H.; Zhu, K.; Ou Yang, T.-H.; Chilton, J. M.; Buchanan, A.; Lalansingh, C. M.; P'ng, C.; Anghel, C. V.; Umar, I.; Lo, B.; Zou, W.; DREAM SMC-Het Participants, ; Simpson, J. T.; Stuart, J. M.; Anastassiou, D.; Guan, Y.; Ewing, A.; Ellrott, K.; Wedge, D. C.; Morris, Q. D.; Van Loo, P.; Boutros, P. C.

10.1101/310425 — bioinformatics — Posted on 2019-05-30

257 Safety assessment of a novel C-type natriuretic peptide derivative and the mechanism of bone- and cartilage-specific toxicity

Yotsumoto, T.; Morozumi, N.; Nakamura, R.; Toshimasa, J.; Furuya, M.; Abe, Y.; Nishimura, T.; Maeda, H.; Ogasawara, H.; Minamitake, Y.; Kangawa, K.

10.1101/655548 — pharmacology and toxicology — Posted on 2019-05-30

258 Fundamental Law of Memory Recall

Naim, M.; Katkov, M.; Romani, S.; Tsodyks, M.

10.1101/510750 — neuroscience — Posted on 2019-05-30

259 Starvation-dependent regulation of eIF6 through multisite phosphorylation by GSK3β

Jungers, C. F.; Elliff, J. M.; Masson-Meyers, D. S.; Phiel, C. J.; Origanti, S.

10.1101/476978 — molecular biology — Posted on 2019-05-30

260 Neurogenin regulates effectors of migratory neuron cell behaviors in Ciona

Gibboney, S.; Kim, K.; Razy-Krajka, F.; Wang, W.; Stolfi, A.

10.1101/654798 — developmental biology — Posted on 2019-05-30

261 Atoh8 acts as a regulator of chondrocyte proliferation and differentiation in endochondral bones

Schroeder, N.; Wuelling, M.; Hoffmann, D.; Brand-Saberi, B.; Vortkamp, A.

10.1101/655555 — developmental biology — Posted on 2019-05-30

262 Implicit micelle model for membrane proteins using super-ellipsoid approximation

Mori, T.; Sugita, Y.

10.1101/654103 — biophysics — Posted on 2019-05-30

263 Freshwater Adaptation at the Molecular Scale in the Unique Sponges of Lake Baikal

Kenny, N. J.; Plese, B.; Riesgo, A.; Itskovich, V. B.

10.1101/416230 — zoology — Posted on 2019-05-30

264 Effects of moderate and high intensity isocaloric aerobic training upon microvascular reactivity and myocardial oxidative stress in rats

Paes, L.; Lima, D.; Matsuura, C.; de Souza, M. d. G.; Cyrino, F.; Barbosa, C.; Ferrao, F.; Bottino, D.; Bouskela, E.; Farinatti, P.

10.1101/655530 — physiology — Posted on 2019-05-30

265 Quantitative physiology of non-energy-limited retentostat cultures of Saccharomyces cerevisiae at near-zero specific growth rates

Liu, Y.; el Masoudi, A.; Pronk, J. T.; van Gulik, W. M.

10.1101/653816 — physiology — Posted on 2019-05-30

266 Extensive transcriptional changes in the aphid species Myzus cerasi under different host environments associated with detoxification genes

Thorpe, P.; Escudero-Martinez, C.; Eves-van den Akker, S.; Bos, J.

10.1101/366450 — genomics — Posted on 2019-05-30

267 Non-host and poor-host resistance against aphids may reside in different plant cell layers depending on the plant species-aphid species interaction

Escudero-Martinez, C.; Leybourne, D.; Bos, J.

10.1101/372839 — ecology — Posted on 2019-05-30

268 The rhg1-a (Rhg1 low-copy) nematode resistance source harbors a copia-family retrotransposon within the Rhg1-encoded α-SNAP gene

Bayless, A. M.; Zapotocny, R. W.; Han, S.; Grunwald, D. J.; Amundson, K. K.; Bent, A. F.

10.1101/653568 — plant biology — Posted on 2019-05-30

269 CLADES: a programmable sequence of reporters for lineage analysis

Garcia-Marques, J.; Yang, C.-P.; Espinosa-Medina, I.; Koyama, M.; Lee, T.

10.1101/655308 — developmental biology — Posted on 2019-05-30

270 Evaluation and Optimization of Chemically-Cleavable Linkers for Quantitative Mapping of Small Molecule-Protein Interactomes

Rabalski, A. J.; Bogdan, A. R.; Baranczak, A.

10.1101/654384 — cell biology — Posted on 2019-05-30

271 Two new polymorphic structures of alpha-synuclein solved by cryo-electron microscopy

Guerrero-Ferreira, R.; Taylor, N. M. I.; Arteni, A.-A.; Kumari, P.; Mona, D.; Ringler, P.; Britschgi, M.; Lauer, M. E.; Verasdock, J.; Riek, R.; Melki, R.; Meier, B. H.; Bockmann, A.; Bousset, L.; Stahlberg, H.

10.1101/654582 — neuroscience — Posted on 2019-05-30

272 The effect of alien species on plant-pollinator network structure across a gradient of plant species invasion

Parra-Tabla, V.; Angulo-Perez, D.; Albor, C.; Campos-Navarrete, M. J.; Tun-Garrido, J.; Sosenski, P.; Alonso, C.; Ashman, T.-L.; Arceo-Gomez, G.

10.1101/655522 — ecology — Posted on 2019-05-30

273 Nuclear actin regulates inducible transcription by enhancing RNA polymerase II clustering

Wei, M.; Fan, X.; Ding, M.; Li, R.; Shao, S.; Hou, Y.; Meng, S.; Tang, F.; Li, C.; Sun, Y.

10.1101/655043 — cell biology — Posted on 2019-05-30

274 Cristae undergo continuous cycles of fusion and fission in a MICOS-dependent manner

Kondadi, A. K.; Anand, R.; Haensch, S.; Urbach, J.; Zobel, T.; Wolf, D. M.; Segawa, M.; Liesa, M.; Shirihai, O. S.; Weidtkamp-Peters, S.; Reichert, A. S.

10.1101/654541 — cell biology — Posted on 2019-05-30

275 USP1 deubiquitinates protein kinase Akt to inhibit PI3K-Akt-FoxO signaling

Goldbraikh, D.; Neufeld, D.; Mutlak-Eid, Y.; Lasry, I.; Parnis, A.; Cohen, S.

10.1101/654921 — cell biology — Posted on 2019-05-30

276 Allosteric regulation of glycogen phosphorylase solution phase structural dynamics at high spatial resolution

Kish, M.; Smith, V.; Subramanian, S.; Vollmer, F.; Lethbridge, N.; Bond, N.; Cole, L.; Phillips, J. J.

10.1101/654665 — biophysics — Posted on 2019-05-30

277 Phosphorylation by CK2 increases the SUMO-dependent activity of Cytomegalovirus transactivator IE2

Tripathi, V.; Chatterjee, K. S.; Das, R.

10.1101/655282 — biochemistry — Posted on 2019-05-30

278 Scribble and Discs-large direct adherens junction positioning and supermolecular assembly to establish apical-basal polarity

Peifer, M.; Bonello, T.

10.1101/654509 — developmental biology — Posted on 2019-05-30

279 Endocardial differentiation in zebrafish occurs during early somitogenesis and is dependent on BMP and etv2 signalling

Capon, S. J.; Smith, K. A.

10.1101/654525 — developmental biology — Posted on 2019-05-30

280 A New Role for Telomerase in Promoting Meiotic Homolog Pairing Fidelity

Smith, D. L.; Oke, A.; Pollard, M.; Anderson, C. M.; Zhuge, T.; Yam, P.; Gromova, T.; Conant, K.; Chu, D.; Patel, N.; Gonzalez, F.; Stoddard, C.; Burgess, S. M.; Hochwagen, A.; Marshall, W. F.; Blackburn, E.; Fung, J. C.

10.1101/654376 — cell biology — Posted on 2019-05-30

281 The development of cooperative channels explains the maturation of hair cell’s mechanotransduction

Kozlov, A.; Risler, T.; Gianoli, F.

10.1101/654764 — biophysics — Posted on 2019-05-30

282 PAM recognition by miniature CRISPR-Cas14 triggers programmable double-stranded DNA cleavage

Karvelis, T.; Bigelyte, G.; Young, J. K.; Hou, Z.; Zedaveinyte, R.; Pociute, K.; Silanskas, A.; Venclovas, C.; Siksnys, V.

10.1101/654897 — biochemistry — Posted on 2019-05-30

283 A Public Database on Traumatic Brachial Plexus Injury

Patroclo, C. B.; Ramalho, B. L.; Maia, J.; Rangel, M. L.; Torres, F.; Souza, L.; Braghetto, K. R.; Vargas, C. D.

10.1101/399824 — neuroscience — Posted on 2019-05-30

284 Single-cell transcriptional diversity is a hallmark of developmental potential

Gulati, G. S.; Sikandar, S. S.; Wesche, D. J.; Manjunath, A.; Bharadwaj, A.; Berger, M. J.; Ilagan, F.; Kuo, A. H.; Hsieh, R. W.; Cai, S.; Zabala, M.; Scheeren, F. A.; Lobo, N. A.; Qian, D.; Yu, F. B.; Dirbas, F. M.; Clarke, M. F.; Newman, A. M.

10.1101/649848 — genomics — Posted on 2019-05-30

285 Tmod2 is a regulator of cocaine responses through control of striatal and cortical excitability, and drug-induced plasticity

Mitra, A.; Deats, S. P.; Dickson, P.; Zhu, J.; Gardin, J.; Neiman, B.; Henkelman, M.; Tsai, N.-P.; Chesler, E.; Zhang, Z.-w.; Kumar, V.

10.1101/648295 — neuroscience — Posted on 2019-05-30

286 Alpha1-Adrenergic Receptor Mediated Long-Term Depression at CA3-CA1 Synapses Can be Induced via Accumulation of Endogenous Norepinephrine and is Preserved Following Noradrenergic Denervation

Dyer-Reaves, K.; Goodman, A. M.; Nelson, A. R.; McMahon, L. L.

10.1101/648873 — neuroscience — Posted on 2019-05-30

287 Systematic re-annotation of 191 genes associated with early-onset epilepsy unmasks de novo variants linked to Dravet syndrome in novel SCN1A exons

Steward, C. A.; Roovers, J.; Suner, M.-M.; Gonzalez, J.-M.; Uszczynska-Ratajczak, B.; Pervouchine, D.; Fitzgerald, S.; Margarida, V.; Samberger, H.; Hamdan, F.; Ceulemans, B.; Leroy, P.; Nava, C.; Lepine, A.; Tapanari, E.; Keiller, D.; Abbs, S.; Sanchis-Juan, A.; Grozeva, D.; Rogers, A. S.; Wright, J.; Choudhary, J.; Deikhans, M.; Guigo, R.; Petryszak, R.; Minassian, B. A.; Cavalleri, G.; Vistios, D.; Petrovski, S.; Harrow, J.; Flicek, P.; Raymond, F. L.; Lench, N. J.; De Jonghe, P.; Mudge, J. M.; Weckhuysen, S.; Sisodiya, S. M.; Frankish, A.

10.1101/648576 — genomics — Posted on 2019-05-30

288 TNAP limits TGF-β-dependent cardiac and skeletal muscle fibrosis by inactivating SMAD2/3 transcription factors

Cossu, G.; Galli, F.; Roostalu, U.; Aldeiri, B. M.; Miyake, T.; Albertini, A.; Bragg, L.; Prehar, S.; McDermott, J.; Cartwright, E.

10.1101/655332 — cell biology — Posted on 2019-05-30

289 JARID2 facilitates transcriptional reprogramming in glioblastoma in response to standard treatment

Rippaus, N.; F-Bruns, A.; Tanner, G.; Taylor, C.; Droop, A.; Care, M. A.; Wilkinson, J.; Jenkinson, M. D.; Brodbelt, A.; Chakrabarty, A.; Ismail, A.; Short, S. C.; Stead, L. F.

10.1101/649400 — cancer biology — Posted on 2019-05-30

290 Sympatric and allopatric differentiation delineate population structure in a free-living terrestrial bacterium

Chase, A. B.; Arevalo, P.; Brodie, E. L.; Polz, M. F.; Karaoz, U.; Martiny, J. B. H.

10.1101/644468 — evolutionary biology — Posted on 2019-05-30

291 Functional brain network modeling in sub-acute stroke patients and healthy controls during rest and continuous attentive tracking

Dorum, E. S.; Kaufmann, T.; Alnaes, D.; Richard, G.; Kolskaar, K. K.; Engvig, A.; Sanders, A.-M.; Ulrichsen, K. M.; Ihle-Hansen, H.; Nordvik, J. E.; Westlye, L. T.

10.1101/644765 — neuroscience — Posted on 2019-05-30

292 Dense neuronal reconstruction through X-ray holographic nano-tomography

Pacureanu, A.; Maniates-Selvin, J. T.; Kuan, A. T.; Thomas, L. A.; Chen, C.-L.; Cloetens, P.; Lee, W.-C. A.

10.1101/653188 — neuroscience — Posted on 2019-05-30

293 High Throughput pMHC-I Tetramer Library Production Using Chaperone Mediated Peptide Exchange

Overall, S. A.; Toor, J. S.; Hao, S.; Yarmarkovich, M.; Nguyen, S.; Japp, A. S.; Moschidi, D.; Betts, M. R.; Maris, J. M.; Smibert, P.; Sgourakis, N. G.

10.1101/653477 — immunology — Posted on 2019-05-30

294 De novo transcriptome analysis of dermal tissue from the rough-skinned newt, Taricha granulosa, enables investigation of tetrodotoxin expression

Glass, H. C.; Melin, A. D.; Vamosi, S. M.

10.1101/653238 — genomics — Posted on 2019-05-30

295 Making the most of Clumping and Thresholding for polygenic scores

Prive, F.; Vilhjalmsson, B. J.; Aschard, H.; Blum, M. G. B.

10.1101/653204 — genetics — Posted on 2019-05-30

296 Strong Purifying Selection Contributes to Genome Streamlining in Epipelagic Marinimicrobia

Aylward, F. O.; Martinez-Gutierrez, C. A.

10.1101/653261 — evolutionary biology — Posted on 2019-05-30

297 Diffuse cliques maintain biodiversity in species-rich ecological communities

Barbier, M.; de Mazancourt, C.; Loreau, M.; Bunin, G.

10.1101/652230 — ecology — Posted on 2019-05-30

298 Learning lexical-syntactic biases: An fMRI study on how we connect words and syntactic information

Weber, K.; Meyer, A.; Hagoort, P.

10.1101/653147 — neuroscience — Posted on 2019-05-30

299 Auditory processing atypicalities for pure tones and complex speech sounds in Rett Syndrome: towards neuromarkers of disease progression.

Sysoeva, O. V.; Molholm, S.; Djukic, A.; Frey, H.-P.; Foxe, J. J.

10.1101/653246 — neuroscience — Posted on 2019-05-30

300 Genomic potential for photoferrotrophy in a seasonally anoxic Boreal Shield lake

Tsuji, J. M.; Tran, N.; Schiff, S. L.; Venkiteswaran, J. M.; Molot, L. A.; Neufeld, J. D.

10.1101/653014 — microbiology — Posted on 2019-05-30

301 Intragenic repeat expansions control yeast chronological aging

Barre, B. P.; Hallin, J.; Yue, J.-X.; Persson, K.; Mikhalev, E.; Irizar, A.; Thompson, D.; Molin, M.; Warringer, J.; Liti, G.

10.1101/653006 — genomics — Posted on 2019-05-30

302 The Genomic Landscape of Centromeres in Cancers

Saha, A.; Mourad, M.; Kaplan, M. H.; Chefetz, I.; Malek, S. N.; Buckanovich, R.; Markovitz, D. M.; Contreras-Galindo, R.

10.1101/505800 — genomics — Posted on 2019-05-30

303 Inositol pyrophosphates impact phosphate homeostasis via modulation of RNA 3’ processing and transcription termination

Sanchez, A. M.; Garg, A.; Schwer, B.; Shuman, S.

10.1101/653162 — genetics — Posted on 2019-05-30

304 Microbial dysbiosis and its implications for disease in a genetically depauperate species

DeCandia, A. L.; King, J. L.; vonHoldt, B. M.

10.1101/653220 — genetics — Posted on 2019-05-30

305 Estimating Rates of Progression and Predicting Future Visual Fields in Glaucoma Using a Deep Variational Autoencoder

Berchuck, S. I.; Mukherjee, S. I.; Medeiros, F. A.

10.1101/652487 — bioinformatics — Posted on 2019-05-30

306 Spasticity reduction in children with cerebral palsy is not associated with reduced energy consumption during walking

Zaino, N. L.; Steele, K. M.; Donelan, J. M.; Schwartz, M. H.

10.1101/653071 — bioengineering — Posted on 2019-05-30

307 N-terminal ubiquitination of amyloidogenic proteins triggers removal of their oligomers by the proteasome holoenzyme

Ye, Y.; Klenerman, D.; Finley, D.

10.1101/653287 — biochemistry — Posted on 2019-05-30

308 Inhibition of jasmonate-mediated plant defences by the fungal metabolite higginsianin B

Dallery, J.-F.; Zimmer, M.; Halder, V.; Suliman, M.; Pigne, S.; Le Goff, G.; Gianniou, D. D.; Trougakos, I. P.; Ouazzani, J.; Gasperini, D.; O'Connell, R. J.

10.1101/651562 — plant biology — Posted on 2019-05-30

309 A fitness cost resulting from Hamiltonella defensa infection is associated with altered probing and feeding behaviour in Rhopalosiphum padi

Leybourne, D. J.; Valentine, T. A.; Bos, J. I. B.; Karley, A. J.

10.1101/652974 — physiology — Posted on 2019-05-30

310 Brain-predicted age difference score is related to specific cognitive functions: A multi-site replication analysis

Boyle, R.; Jollans, L.; Rueda-Delgado, L. M.; Rizzo, R.; Yener, G. G.; McMorrow, J. P.; Knight, S. P.; Carey, D.; Robertson, I. H.; Emek-Savas, D. D.; Stern, Y.; Kenny, R. A.; Whelan, R.

10.1101/652867 — neuroscience — Posted on 2019-05-30

311 Polygenic risk score of alcohol consumption predicts alcohol-related morbidity and all-cause mortality

Kiiskinen, T.; Mars, N. J.; Palviainen, T.; Koskela, J.; Ripatti, P.; Ramo, J. T.; Ruotsalainen, S.; FinnGen, ; GSCAN Consortium, ; Palotie, A.; Madden, P. A.; Rose, R. J.; Kaprio, J.; Salomaa, V.; Makela, P.; Havulinna, A. S.; Ripatti, S.

10.1101/652396 — genomics — Posted on 2019-05-30

312 Evolutionary forces on different flavors of intrinsic disorder in the human proteome

Forcelloni, S.; GIANSANTI, A.

10.1101/653063 — evolutionary biology — Posted on 2019-05-30

313 Practical universal k-mer sets for minimizer schemes

DeBlasio, D.; Gbosibo, F.; Kingsford, C.; Marcais, G.

10.1101/652925 — bioinformatics — Posted on 2019-05-30

314 Cross Trial Meta and Time Series Pharmacodynamic Analyses of Apremilast Effects

Medvedeva, I. V.; Stokes, M. E.; Eisinger, D.; LaBrie, S. T.; Ai, J.; Trotter, M. W. B.; Schafer, P.; Yang, R.

10.1101/652875 — bioinformatics — Posted on 2019-05-30

315 gapsplit: Efficient random sampling for non-convex constraint-based models

Keaty, T. C.; Jensen, P. A.

10.1101/652917 — systems biology — Posted on 2019-05-30

316 Locally-adapted Mimulus ecotypes differentially impact rhizosphere bacterial and archaeal communities in an environment-dependent manner

Bowsher, A. W.; Kearns, P. J.; Popovic, D.; Lowry, D. B.; Shade, A.

10.1101/652883 — plant biology — Posted on 2019-05-30

317 Maternal experience-dependent cortical plasticity in mice is circuit- and stimulus-specific and requires Mecp2

Lau, B. Y. B.; Krishnan, K.; Huang, Z. J.; Shea, S. D.

10.1101/655035 — neuroscience — Posted on 2019-05-30

318 Fluorescent reporters for functional analysis in rice leaves

Luginbuehl, L. H.; El-Sharnouby, S.; Wang, N.; Hibberd, J. M.

10.1101/649160 — plant biology — Posted on 2019-05-30

319 CRISPR-Cas9 mutated pregnane x receptor (pxr) retains pregnenolone-induced expression of cytochrome p450 family 3, subfamily A, polypeptide 65 (cyp3a65) in zebrafish (Danio rerio) larvae.

Salanga, M. C.; Brun, N. R.; Francolini, R.; Stegeman, J. J.; Goldstone, J. V.

10.1101/652743 — pharmacology and toxicology — Posted on 2019-05-30

320 Elimination of galanin synthesis in noradrenergic neurons reduces galanin in select brain areas and promotes active coping behaviors

Tillage, R. P.; Sciolino, N. R.; Plummer, N. W.; Lustberg, D.; Liles, L. C.; Smith, K. G.; Jensen, P.; Weinshenker, D.

10.1101/651943 — neuroscience — Posted on 2019-05-30

321 Impaired Social Learning Predicts Reduced Real-life Motivation in Individuals with Depression: A Computational fMRI Study

Frey, A.-L.; McCabe, C.

10.1101/652776 — neuroscience — Posted on 2019-05-30

322 Community driven dynamics of oscillatory network responses to threat

Muthuraman, M.; Chirumamilla, V. C.; Koirala, N.; Anwar, A. R.; Tuescher, O.; Vogt, J.; Horstmann, P.; Meyer, B.; George, B.; Gonazalez-Escamilla, G.; Groppa, S.

10.1101/652834 — neuroscience — Posted on 2019-05-30

323 The categorical neural organization of speech aids its perception in noise

Bidelman, G.; Bush, L. C.; Boudreaux, A. M.

10.1101/652842 — neuroscience — Posted on 2019-05-30

324 DIVISION OF LABOR INCREASES WITH COLONY SIZE, REGARDLESS OF GROUP COMPOSITION, IN THE SOCIAL SPIDER STEGODYPHUS DUMICOLA

Wright, C. M.; Lichtenstein, J. L. L.; Holbrook, C. T.; Najm, G.; Pretorius, J.; Pinter-Wollman, N.; Pruitt, J. N.

10.1101/652677 — animal behavior and cognition — Posted on 2019-05-30

325 Repetitive subconcussive head impacts and changes in sensory processing for balance control

Caccese, J. B.; Santos, F. V.; Anson, E.; Buckley, T. A.; Yamaguchi, F.; Gongora, M.; Jeka, J. J.

10.1101/648857 — neuroscience — Posted on 2019-05-30

326 Effects of Serotonin and Dopamine Depletion on Neural Prediction Computations during Social Learning

Frey, A.-L.; McCabe, C.

10.1101/652693 — neuroscience — Posted on 2019-05-30

327 miRDriver: A Tool to Infer Copy Number Derived miRNA-Gene Networks in Cancer

Bose, B.; Bozdag, S.

10.1101/652156 — bioinformatics — Posted on 2019-05-30

328 Design principles of ROS dynamic networks relevant to precision therapies for age-related diseases

Kolodkin, A.; Prasad Sharma, R.; Colangelo, A. M.; Ignatenko, A.; Martorana, F.; Jennen, D.; Briede, J. J.; Brady, N.; Barberis, M.; Mondeel, T. D. G. A.; Papa, M.; Kumar, V.; Peters, B.; Skupin, A.; Alberghina, L.; Balling, R.; Westerhoff, H. V.

10.1101/647776 — systems biology — Posted on 2019-05-29

329 Resurgent Na+ Current Offers Noise Modulation in Bursting Neurons

Venugopal, S.; Seki, S.; Terman, D. H.; Pantazis, A.; Olcese, R.; Wiedau-Pazos, M.; Chandler, S. H.

10.1101/491324 — neuroscience — Posted on 2019-05-29

330 Superadditive and subadditive dynamics are not inherent to the types of interacting threat

Haller-Bull, V.; Bode, M.

10.1101/522755 — ecology — Posted on 2019-05-29

331 The structure of the population code in neural ensembles of V4 shapes pair-wise interactions on different time scales.

Koren, V.; Andrei, A. R.; Hu, M.; Dragoi, V.; Obermayer, K.

10.1101/645135 — neuroscience — Posted on 2019-05-29

332 PP2ACdc55 dephosphorylates Pds1 to inhibit spindle elongation

Khondker, S.; Kajjo, S.; Chandler-Brown, D.; Skotheim, J.; Rudner, A.; Ikui, A. E.

10.1101/648386 — cell biology — Posted on 2019-05-29

333 Identifying miRNA synergism using multiple-intervention causal inference

Zhang, J.; Pham, V. V. H.; Liu, L.; Xu, T.; Truong, B.; Li, J.; Le, T. D.

10.1101/652180 — bioinformatics — Posted on 2019-05-29

334 Combining statistical and mechanistic models to unravel the drivers of mortality within a rear-edge beech population

Petit-Cailleux, C.; Davi, H.; Lefevre, F.; Garrigue, J.; Magdalou, J.-A.; Hurson, C.; Magnanou, E.; Muratorio, S.

10.1101/645747 — ecology — Posted on 2019-05-29

335 Ultraefficient Unbiased Molecular Dynamics simulation of protein-ligand interactions: How profound yet affordable can it be?

Sohraby, F.; Aryapour, H.; Javaheri Moghadam, M.; Aliyar, M.

10.1101/650440 — bioinformatics — Posted on 2019-05-29

336 Strain-aware assembly of genomes from mixed samples using variation graphs

Baaijens, J.; Stougie, L.; Schoenhuth, A.

10.1101/645721 — bioinformatics — Posted on 2019-05-29

337 Haplotype-aware graph indexes

Siren, J.; Garrison, E.; Novak, A. M.; Paten, B.; Durbin, R.

10.1101/559583 — bioinformatics — Posted on 2019-05-29

338 Unfolded protein-independent IRE1 activation contributes to multifaceted developmental processes in Arabidopsis

Mishiba, K.-i.; Iwata, Y.; Mochizuki, T.; Matsumura, A.; Nishioka, N.; Hirata, R.; Koizumi, N.

10.1101/651182 — plant biology — Posted on 2019-05-29

339 Three-dimensional connectivity and chromatin environment mediate the activation efficiency of mammalian DNA replication origins

Jodkowska, K.; Pancaldi, V.; Almeida, R.; Rigau, M.; Grana, O.; Fernandez-Justel, J. M.; Rodriguez Acebes, S.; Rubio-Camarillo, M.; Carrillo-de Santa Pau, E.; Pisano, D.; Al-Shahrour, F.; Valencia, A.; Gomez, M.; Mendez, J.

10.1101/644971 — genomics — Posted on 2019-05-29

340 Primordial Blasts, a population of blood borne stem cells responsible for whole body regeneration in a basal chordate

Kassmer, S. H.; Langenbacher, A. D.; De Tomaso, A. W.

10.1101/647578 — developmental biology — Posted on 2019-05-29

341 Alcohol consumption, obesity and hypertension: Relationship patterns along different age groups in Uganda

Tumwesigye, N. M. M.; Mutungi, G.; Bahendeka, S.; Wesonga, R.; Swahn, M. H.; Katureebe, A.; Guwatudde, D.

10.1101/654251 — epidemiology — Posted on 2019-05-29

342 Not a one-way road - severity, progression and prevention of firework fears in dogs

Riemer, S.

10.1101/654301 — animal behavior and cognition — Posted on 2019-05-29

343 Multiple loci control eyespot number variation on the hindwings of Bicyclus anynana butterflies

Rivera-Colon, A. G.; Westerman, E. L.; van Belleghem, S.; Monteiro, A.; Papa, R.

10.1101/653451 — genetics — Posted on 2019-05-29

344 Associations of ‘Relative corticosterone deficiency’ with genetic variation in CYP17A1 and metabolic syndrome features

Mackenzie, S. D.; Crawford, A. A.; Ackermann, D.; Schraut, K. E.; Hayward, C.; Bolton, J. L.; Saunders, C.; Al-Dujaili, E.; Dick, B.; Escher, G.; Vogt, B.; Pruijm, M.; Ponte, B.; Wilson, J. F.; Strachan, M. W.; Price, J. F.; Phillips, D. I. W.; MacKenzie, S. M.; Davies, E.; Reynolds, R. M.; Walker, B. R.

10.1101/654269 — epidemiology — Posted on 2019-05-29

345 True Colors: commercially-acquired morphological genotypes reveal hidden allele variation among dog breeds, informing both trait ancestry and breed potential

Dreger, D. L.; Hooser, B.; Hughes, A. M.; Ganesan, B.; Donner, J.; Anderson, H.; Holtvoigt, L.; Ekenstedt, K. J.

10.1101/654343 — genetics — Posted on 2019-05-29

346 An Accurate Bioinformatics Tool For Anti-Cancer Peptide Generation Through Deep Learning Omics

Kaushik, A. C.; Wei, D.-Q.

10.1101/654277 — bioinformatics — Posted on 2019-05-29

347 Biological Structure and Function Emerge from Scaling Unsupervised Learning to 250 Million Protein Sequences

Rives, A.; Goyal, S.; Meier, J.; Guo, D.; Ott, M.; Zitnick, C. L.; Ma, J.; Fergus, R.

10.1101/622803 — synthetic biology — Posted on 2019-05-29

348 The plastidial exporter Enhanced Disease Susceptibility 5 is required for the biosynthesis of N-hydroxy pipecolic acid

Rekhter, D.; Mohnike, L.; Feussner, K.; Zienkiewicz, K.; Zhang, Y.; Feussner, I.

10.1101/630723 — plant biology — Posted on 2019-05-29

349 Sound comparison of seven TMS coils at matched stimulation strength

Koponen, L. M.; Goetz, S. M.; Tucci, D. L.; Peterchev, A. V.

10.1101/606418 — neuroscience — Posted on 2019-05-29

350 Neural evidence for age-related differences in representational quality and strategic retrieval processes

Trelle, A. N.; Henson, R. N.; Simons, J.

10.1101/333484 — neuroscience — Posted on 2019-05-29

351 Dopaminergic drug treatment remediates exaggerated cingulate prediction error responses in obsessive-compulsive disorder

Murray, G. K.; Knolle, F.; Ersche, K. D.; Craig, K. J.; Abbot, S.; Shabbir, S. S.; Fineberg, N. A.; Suckling, J.; Sahakian, B. J.; Bullmore, E. T.; Robbins, T. W.

10.1101/225938 — neuroscience — Posted on 2019-05-29

352 Testing models of mRNA localization reveals robustness regulated by reducing transport between cells

Harrison, J. U.; Parton, R. M.; Davis, I.; Baker, R. E.

10.1101/533133 — developmental biology — Posted on 2019-05-29

353 DeePaC: Predicting pathogenic potential of novel DNA with reverse-complement neural networks

Bartoszewicz, J. M.; Seidel, A.; Rentzsch, R.; Renard, B. Y.

10.1101/535286 — bioinformatics — Posted on 2019-05-29

354 Dendritic spine geometry and spine apparatus organization govern the spatiotemporal dynamics of calcium

Bell, M.; Bartol, T.; Sejnowski, T.; Rangamani, P.

10.1101/386367 — systems biology — Posted on 2019-05-29

355 OPTIMOS PRIME: An R package for autoecological (optima and tolerance range) data calculation

Sathicq, M. B.; Nicolosi Gelis, M. M.; Cochero, J.

10.1101/654152 — ecology — Posted on 2019-05-29

356 Optimization of the experimental parameters of the ligase cycling reaction

Schlichting, N.; Reinhardt, F.; Jager, S.; Schmidt, M.; Kabisch, J.

10.1101/510768 — synthetic biology — Posted on 2019-05-29

357 Partial-resistance against aphids in wild barley reduces the oviposition success of the generalist parasitoid, Aphidius colemani

Leybourne, D. J.; Valentine, T. A.; Bos, J. I. B.; Karley, A. J.

10.1101/653113 — plant biology — Posted on 2019-05-29

358 IPSC-derived neuronal cultures expressing the Alzheimer’s disease associated rare TREM2 R47H variant enables the construction of an Aβ-induced gene regulatory network

Martins, S.; Mueller-Schiffmann, A.; Bohndorf, M.; Wruck, W.; Sleegers, K.; Van Broeckhoven, C.; Korth, C.; Adjaye, J.

10.1101/652446 — neuroscience — Posted on 2019-05-29

359 Cochlear activity in silent cue-target intervals shows a theta rhythmic pattern and is correlated to attentional alpha modulations

Koehler, M. H. A.; Demarchi, G.; Weisz, N.

10.1101/653311 — neuroscience — Posted on 2019-05-29

360 Ectopic hepatocyte transplantation cures the pig model of tyrosinemia

Nicolas, C. T.; Hickey, R. D.; Allen, K. L.; Du, Z.; VanLith, C. J.; Guthman, R. M.; Amiot, B.; Suksanpaisan, L.; Han, B.; Francipane, M. G.; Cheikhi, A.; Jiang, H.; Bansal, A.; Pandey, M. K.; Garg, I.; Lowe, V.; Bhagwate, A. A.; O'Brien, D.; Kocher, J.-P. A.; DeGrado, T. R.; Nyberg, S. L.; Kaiser, R. A.; Lagasse, E.; Lillegard, J. B.

10.1101/648493 — molecular biology — Posted on 2019-05-29

361 Computational Saturation Mutagenesis of the β subunit of RNA polymerase in Mycobacterium leprae

Vedithi, S. C.; Rodrigues, C. H. M.; Portelli, S.; Skwark, M. J.; Das, M.; Ascher, D. B.; Blundell, T. L.; Malhotra, S.

10.1101/654095 — bioinformatics — Posted on 2019-05-29

362 Controlling and co-ordinating chitinase secretion in a Serratia marcescens population

Costa, M. d. A. A.; Owen, R. A.; Tammsalu, T.; Buchanan, G.; Palmer, T.; Sargent, F.

10.1101/652685 — microbiology — Posted on 2019-05-29

363 Ribosomal DNA methylation as stable biomarkers for detection of cancer in plasma

Zhang, X.; Fang, H.; Zhang, W.; Zhong, B.; Li, Y.; Wang, X.

10.1101/651497 — genomics — Posted on 2019-05-29

364 Low Computational-cost Cell Detection Method for Calcium Imaging Data

Ito, T.; Ota, K.; Ueno, K.; Oisi, Y.; Matsubara, C.; Kobayashi, K.; Ohkura, M.; Nakai, J.; Murayama, M.; Aonishi, T.

10.1101/502153 — neuroscience — Posted on 2019-05-29

365 Antioxidants maintain Butyrate production by Human Gut Clostridia in the presence of Oxygen

Million, M.; Arsmtrong, N.; Khelaifia, S.; Guilhot, E.; Dubourg, G.; Chabriere, E.; Raoult, D.

10.1101/652958 — microbiology — Posted on 2019-05-29

366 Membrane domains and phosphatase exclusion produce robust signaling responses in B cells engaged with natural ligands and artificial cross-linkers presented on lipid bilayers.

Nunez, M. F.; Wisser, K.; Veatch, S.

10.1101/652719 — biophysics — Posted on 2019-05-29

367 Single-cell information analysis reveals small intra- and large intercellular variations increase cellular information capacity

Wada, T.; Wataya, M.; Fujii, M.; Hironaka, K.-i.; Eto, M.; Uda, S.; Hoshino, D.; Kunida, K.; Inoue, H.; Kubota, H.; Hamaguchi, H.; Furuichi, Y.; Manabe, Y.; Fujii, N. L.; Kuroda, S.

10.1101/653832 — systems biology — Posted on 2019-05-29

368 Deletion of beta-fructofuranosidase (invertase) genes is associated with sucrose content in Date Palm fruit

Malek, J. A.; Mathew, S.; Mathew, L. S.; Younuskunju, S.; Mohamoud, Y. A.; Suhre, K.

10.1101/652289 — plant biology — Posted on 2019-05-29

369 Evidence for the involvement of protein lysine methylation in the response of sensitive and tolerant Arabidopsis species to cadmium stress

Serre, N. B.; Sarthou, M.; Gigarel, O.; Figuet, S.; Corso, M.; Choulet, J.; Rofidal, V.; Alban, C.; Santoni, V.; Bourguignon, J.; Verbruggen, N.; Ravanel, S.

10.1101/652651 — plant biology — Posted on 2019-05-29

370 A common molecular basis to the convergent evolution of the selfing syndrome in Capsella

Wozniak, N. J.; Kappel, C.; Marona, C.; Altschmied, L.; Neuffer, B.; Sicard, A.

10.1101/653139 — plant biology — Posted on 2019-05-29

371 Extra-cellular matrix induced by steroids through a G-protein coupled receptor in a Drosophila model of renal fibrosis

Zheng, W.; Ocorr, K.; Tatar, M.

10.1101/653329 — pathology — Posted on 2019-05-29

372 Spatial organization of cells and variable expression of autophagy, apoptosis, and neurodevelopmental genes might underlie selective brain region vulnerability in Attention-Deficit/Hyperactivity Disorder

Faraone, S. V.; Hess, J.; Radonjic, N. V.; Patak, J.; Glatt, S. J.

10.1101/652792 — neuroscience — Posted on 2019-05-29

373 A novel dimerization module in Gemin5 is critical for protein recruitment and translation control

Moreno-Morcillo, M.; Francisco-Velilla, R.; Embarc-Buh, A.; Fernandez-Chamorro, J.; Ramon-Maiques, S.; Martinez-Salas, E.

10.1101/654111 — molecular biology — Posted on 2019-05-29

374 Metabolic overlap in environmentally diverse microbial communities

Hester, E. R.; Jetten, M. S. M.; Welte, C. U.; Lücker, S.

10.1101/653881 — microbiology — Posted on 2019-05-29

375 A novel effect of the antigenic peptides position for presentation upon MHC class I

Imai, J.; Otani, M.; Koike, E.; Yokoyama, Y.; Maruya, M.; Koyasu, S.; Sakai, T.

10.1101/653170 — immunology — Posted on 2019-05-29

376 c-Jun Overexpressing CAR-T Cells are Exhaustion-Resistant and Mediate Enhanced Antitumor Activity

Lynn, R. C.; Weber, E. W.; Gennert, D.; Sotillo, E.; Xu, P.; Good, Z.; Anbunathan, H.; Jones, R.; Tieu, V.; Granja, J.; DeBourcy, C.; Majzner, R.; Satpathy, A.; Quake, S. R.; Chang, H.; Mackall, C. L.

10.1101/653725 — immunology — Posted on 2019-05-29

377 Failure to detect synergy between variants in transferrin and hemochromatosis and Alzheimer’s disease in large cohort

Vance, E.; Gonzalez, J.; Miller, J. B.; Alzheimer's Disease Genetics Consortium, ; Staley, L.; Crane, P.; Mukherjee, S.; Kauwe, J. S.

10.1101/649962 — genetics — Posted on 2019-05-29

378 Monogenic and polygenic inheritance become instruments for clonal selection

Loh, P.-R.; Genovese, G.; McCarroll, S. A.

10.1101/653691 — genetics — Posted on 2019-05-29

379 Evolution of Larval Segment Position across 12 Drosophila Species

Kalay, G.; Atallah, J.; Sierra, N. C.; Tang, A. M.; Crofton, A. E.; Murugesan, M. K.; Wykoff-Clary, S.; Lott, S. E.

10.1101/653121 — evolutionary biology — Posted on 2019-05-29

380 Ecological specificity of the metagenome in a set of lower termite species supports contribution of the microbiome to adaptation of the host

Waidele, L.; Korb, J.; Voolstra, C. R.; Dedeine, F.; Staubach, F.

10.1101/526038 — evolutionary biology — Posted on 2019-05-29

381 A comprehensive evaluation of long read error correction methods

Zhang, H.; Jain, C.; Aluru, S.

10.1101/519330 — bioinformatics — Posted on 2019-05-29

382 PyBSASeq: a novel, simple, and effective algorithm for BSA-Seq data analysis

Zhang, J.; Panthee, D.

10.1101/654137 — bioinformatics — Posted on 2019-05-29

383 Codon Use and Aversion is Largely Phylogenetically Conserved Across the Tree of Life

Miller, J. B.; McKinnon, L. M.; Whiting, M. F.; Ridge, P. G.

10.1101/649590 — evolutionary biology — Posted on 2019-05-29

384 Collective-variable selection and generative Hopfield-Potts models for protein-sequence families

Shimagaki, K.; Weigt, M.

10.1101/652784 — bioinformatics — Posted on 2019-05-29

385 An in silico survey of Clostridioides difficile extrachromosomal elements

Hornung, B. V. H.; Kuijper, E. J.; Smits, W. K.

10.1101/651539 — microbiology — Posted on 2019-05-29

386 Precisely control mitochondria with light to manipulate cell fate decision

Ernst, P.; Xu, N.; Qu, J.; Chen, H.; Goldberg, M. S.; Zhang, J.; O'Rourke, B.; Liu, X.; Zhou, L.

10.1101/469668 — biophysics — Posted on 2019-05-29

387 pVACtools: a computational toolkit to identify and visualize cancer neoantigens

Hundal, J.; Kiwala, S.; McMichael, J.; Miller, C. A.; Wollam, A. T.; Xia, H.; Liu, C. J.; Zhao, S.; Feng, Y.-Y.; Graubert, A. P.; Wollam, A. Z.; Neichin, J.; Neveau, M.; Walker, J.; Gillanders, W. E.; Mardis, E. R.; Griffith, O. L.; Griffith, M.

10.1101/501817 — bioinformatics — Posted on 2019-05-29

388 The menstrual cycle is a primary contributor to cyclic variation in women’s mood, behavior, and vital signs

Pierson, E.; Althoff, T.; Thomas, D.; Hillard, P.; Leskovec, J.

10.1101/583153 — physiology — Posted on 2019-05-29

389 Sensory Stimulation-Induced Astrocytic Calcium Signaling in Electrically Silent Ischemic Penumbra

Murmu, R.; Fordsmann, J.; Cai, C.; Brazhe, A.; Thomsen, K.; Lauritzen, M.

10.1101/652305 — neuroscience — Posted on 2019-05-29

390 A Molecular Odorant Transduction Model and the Complexity of Combinatorial Encoding in the Drosophila Antenna

Lazar, A. A. A.; Yeh, C.-H.

10.1101/237669 — neuroscience — Posted on 2019-05-29

391 Bacterial and fungal communities are differentially modified by melatonin in agricultural soils under abiotic stress

Madigan, A. P.; Egidi, E.; Bedon, F.; Franks, A. E.; Plummer, K. M.

10.1101/652388 — microbiology — Posted on 2019-05-29

392 X chromosome and autosomal recombination are differentially sensitive to disruptions in SC maintenance

Billmyre, K. K.; Cahoon, C.; Heenan, G. M.; Wesley, E.; Yu, Z.; Unruh, J. R.; Takeo, S.; Hawley, R. S.

10.1101/277764 — genetics — Posted on 2019-05-29

393 Designing Distributed Cell Classifier Circuits using a Genetic Algorithm

Nowicka, M.; Siebert, H.

10.1101/652339 — bioinformatics — Posted on 2019-05-29

394 Early life stress impairs postnatal oligodendrogenesis and adult behavior through activity-dependent mechanisms

TEISSIER, A.; Le Magueresse, C.; Olusakin, J.; Andrade-da-Costa, B. L. d. S.; de Stasi, A.; Bacci, A.; Kawasawa, Y. I.; Vaidya, V. V.; Gaspar, P.

10.1101/369660 — animal behavior and cognition — Posted on 2019-05-29

395 Golden Mutagenesis: An efficient multi-site saturation mutagenesis approach by Golden Gate cloning with automated primer design

Puellmann, P.; Ulpinnis, C.; Marillonnet, S.; Gruetzner, R.; Neumann, S.; Weissenborn, M. J.

10.1101/453621 — molecular biology — Posted on 2019-05-29

396 Quantifying cell line specific proliferation and migration rates in glioblastoma cells

Rosen, E.; Gerlee, P.; Nelander, S.

10.1101/654053 — cancer biology — Posted on 2019-05-29

397 Intracellular dynamics of CA3 pyramidal cells supporting sparse coding during theta and large irregular activity

Malezieux, M.; Kees, A. L.; Mulle, C.

10.1101/652461 — neuroscience — Posted on 2019-05-29

398 CoMM-S2: a collaborative mixed model using summary statistics in transcriptome-wide association studies

Yang, Y.; Shi, X.; Jiao, Y.; Huang, J.; Chen, M.; Zhou, X.; Sun, L.; Lin, X.; Yang, C.; Liu, J.

10.1101/652263 — bioinformatics — Posted on 2019-05-29

399 The Geometric Sparse Matrix Completion Model for Predicting Drug Side effects

Galeano Galeano, D. A.; Paccanaro, A.

10.1101/652412 — bioinformatics — Posted on 2019-05-29

400 Brain age estimation is a sensitive marker of processing speed in the early course of multiple sclerosis

Hogestol, E. A.; Nygaard, G. O.; Emhjellen, P. E.; Kaufmann, T.; Beyer, M. K.; Sowa, P.; Andreassen, O. A.; Celius, E. G.; Landro, N. I.; Westlye, L. T.; Harbo, H. F.

10.1101/651521 — neuroscience — Posted on 2019-05-29

401 Estimating the Readily-Releasable Vesicle Pool Size at Synaptic Connections in a Neocortical Microcircuit

Barros-Zulaica, N.; Rahmon, J.; Chindemi, G.; Perin, R.; Markram, H.; Ramaswamy, S.; Muller, E.

10.1101/646497 — neuroscience — Posted on 2019-05-29

402 Numerically enhanced adaptive optics-based 3D STED microscopy for deep-tissue super-resolved imaging

Zdankowski, P.; Trusiak, M.; McGloin, D.; Swedlow, J. R.

10.1101/653394 — biophysics — Posted on 2019-05-29

403 ChIPSummitDB: A ChIP-seq-based database of human transcription factor binding sites and the topological arrangements of the proteins bound to them

Czipa, E.; Schiller, M.; Nagy, T.; Kontra, L.; Steiner, L.; Koller, J.; Palne-Szen, O.; Barta, E.

10.1101/652420 — bioinformatics — Posted on 2019-05-29

404 Strain-level diversity impacts cheese rind microbiome assembly and function

Niccum, B. A.; Kastman, E. K.; Kfoury, N.; Robbat, A.; Wolfe, B. E.

10.1101/652768 — microbiology — Posted on 2019-05-29

405 The methyl cycle is a conserved regulator of biological clocks.

Fustin, J.-M.; Ye, S.; Rakers, C.; Versteven, M.; Cargill, S. J.; Tamai, K. T.; Xu, Y.; Jabbur, M. L.; Kojima, R.; Lamberti, M. L.; Whitmore, D.; Stanewsky, R.; Kageyama, R.; Matsuo, T.; Yoshioka-Kobayashi, K.; Golombek, D. A.; Johnson, C. H.; van Ooijen, G.; Okamura, H.

10.1101/653667 — evolutionary biology — Posted on 2019-05-29

406 Genetic editing of SEC61, SEC62, and SEC63 abrogates human cytomegalovirus US2 expression in a signal peptide-dependent manner

Schuren, A. B.; Boer, I. G. J.; Bouma, E.; Lebbink, R. J.; Wiertz, E.

10.1101/653857 — cell biology — Posted on 2019-05-29

407 MemSTATS: A Benchmark Set of Membrane Protein Symmetries and Pseudo-Symmetries

Aleksandrova, A. A.; Sarti, E.; Forrest, L. R.

10.1101/653295 — bioinformatics — Posted on 2019-05-29

408 The plasma Factor XIII heterotetrameric complex structure: unexpected unequal pairing within a symmetric complex

Singh, S.; Nazabal, A.; Kaniyappan, S.; Pellequer, J.-L.; Wolberg, A. S.; Imhof, D.; Oldenburg, J.; Biswas, A.

10.1101/651448 — molecular biology — Posted on 2019-05-29

409 Dock5 is a new regulator of microtubule dynamic instability through GSK3β inhibition in osteoclasts

Guimbal, S.; Guerit, D.; Chardon, M.; Blangy, A.; Vives, V.

10.1101/653055 — cell biology — Posted on 2019-05-29

410 Error-speed correlations in biopolymer synthesis

Chiuchiu, D.; Tu, Y.; Pigolotti, S.

10.1101/651216 — biophysics — Posted on 2019-05-29

411 Obesity-induced gut microbiota dysbiosis can be ameliorated by fecal microbiota transplantation: a multiomics approach.

Guirro, M.; Costa, A.; Gual-Grau, A.; Herrero, P.; Torrell, H.; Canela, N.; Arola, L.

10.1101/654228 — systems biology — Posted on 2019-05-29

412 Evidence of the Cost-Efficiency of Scale as seen in Polio Vaccination and Surveillance Costs

Hagedorn, B.; Mercer, L.; Chabot-Couture, G.

10.1101/654350 — epidemiology — Posted on 2019-05-29

413 RFQAmodel: Random Forest Quality Assessment to identify a predicted protein structure in the correct fold

West, C. E.; de Oliveira, S. H. P.; Deane, C. M.

10.1101/654293 — bioinformatics — Posted on 2019-05-29

414 ASA3P: An automatic and scalable pipeline for the assembly, annotation and higher level analysis of closely related bacterial isolates

Schwengers, O.; Hoek, A.; Fritzenwanker, M.; Falgenhauer, L.; Hain, T.; Chakraborty, T.; Goesmann, A.

10.1101/654319 — bioinformatics — Posted on 2019-05-29

415 AVDM: Angular Velocity Decoding Model Accounting for Visually Guided Flight Behaviours of the Bee

Wang, H.; Fu, Q.; Wang, H.; Baxter, P.; Peng, J.; Yue, S.

10.1101/654335 — animal behavior and cognition — Posted on 2019-05-29

416 Frequency and Distribution of Corneal Astigmatism and Keratometry Features: Methodology and Findings of the UK Biobank Study

Pontikos, N.; Chua, S.; Foster, P. J.; Tuft, S. J.; Day, A. C.; UK Biobank Eye and Vision Consortium,

10.1101/654236 — epidemiology — Posted on 2019-05-29

417 Sleep, regional grey matter volumes, and psychological functioning in adolescents

Lapidaire, W.; Urrila, A. S.; Artiges, E.; Miranda, R.; Vulser, H.; Bezivin-Frere, P.; Lemaitre, H.; Penttilä, J.; Banaschewski, T.; Bokde, A. L. W.; Bromberg, U.; Büchel, C.; Conrod, P. J.; Desrivieres, S.; Frouin, V.; Gallinat, J.; Garavan, H.; Gowland, P.; Heinz, A.; Ittermann, B.; Papadopoulos-Orfanos, D.; Paus, T.; Smolka, M. N.; Schumann, G.; Paillere Martinot, M.-L.; Martinot, J.-L.; Imagen Consortium,

10.1101/645184 — neuroscience — Posted on 2019-05-29

418 Membrane integration and topology of RIFIN and STEVOR proteins of the Plasmodium falciparum parasite

Andersson, A.; Kudva, R.; Magoulopoulou, A.; Lejarre, Q.; Lara, P.; Xu, P.; Goel, S.; Pissi, J.; Ru, X.; Hessa, T.; Wahlgren, M.; Von Heijne, G.; Nilsson, I.; Tellgren-Roth, A.

10.1101/653998 — biochemistry — Posted on 2019-05-29

419 Sub-lethal insecticide exposure affects host biting efficiency of Kdr-resistant Anopheles gambiae

Diop, M. M.; Chandre, F.; Rossignol, M.; Porciani, A.; Chateau, M.; Moiroux, N.; Pennetier, C.

10.1101/653980 — animal behavior and cognition — Posted on 2019-05-29

420 Plasmid-mediated metronidazole resistance in Clostridioides difficile

Boekhoud, I.; Hornung, B. V. H.; Sevilla Romeo, A. E.; Harmanus, C.; Bos-Sanders, I. M. J. G.; Terveer, E.; Bolea, R.; Corver, J.; Kuijper, E. J.; Smits, W. K.

10.1101/643775 — microbiology — Posted on 2019-05-29

421 The evolution of parasite host range in genetically diverse host populations

Gibson, A. K.; Baffoe-Bonnie, H. S.; Penley, M. J.; Lin, J.; Owens, R.; Khalid, A.; Morran, L. T.

10.1101/653675 — evolutionary biology — Posted on 2019-05-29

422 Presto scales Wilcoxon and auROC analyses to millions of observations

Korsunsky, I.; Nathan, A.; Millard, N.; Raychaudhuri, S.

10.1101/653253 — bioinformatics — Posted on 2019-05-29

423 The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens

Zhou, N.; Jiang, Y.; Bergquist, T. R.; Lee, A. J.; Kacsoh, B. Z.; Crocker, A. W.; Lewis, K. A.; Georghiou, G.; Nguyen, H. N.; Hamid, M. N.; Davis, L.; The Critical Assessment of Function Annotation, ; Rost, B.; Brenner, S. E.; Orengo, C. A.; Jeffery, C. J.; Bosco, G. D.; Hogan, D. A.; Martin, M. J.; O'Donovan, C.; Mooney, S. D.; Greene, C. S.; Radivojac, P.; Friedberg, I.

10.1101/653105 — bioinformatics — Posted on 2019-05-29

424 SigProfilerMatrixGenerator: a tool for visualizing and exploring patterns of small mutational events

Bergstrom, E. N.; Huang, M. N.; Mahto, U.; Barnes, M.; Stratton, M. R.; Rozen, S. G.; Alexandrov, L. B.

10.1101/653097 — bioinformatics — Posted on 2019-05-29

425 CReasPy-cloning: a method for simultaneous cloning and engineering of megabase-sized genomes in yeast using the CRISPR-Cas9 system

Ruiz, E.; Talenton, V.; Dubrana, M.-P.; Guesdon, G.; Lluch-Senar, M.; Salin, F.; Sirand-Pugnet, P.; Arfi, Y.; Lartigue, C.

10.1101/647750 — bioengineering — Posted on 2019-05-29

426 On the Reliability of Chronically Implanted Thin-Film Electrodes in Human Arm Nerves for Neuroprosthetic Applications

Cvancara, P.; Valle, G.; Mueller, M.; Guiho, T.; Hiairrassary, A.; Petrini, F.; Raspopovic, S.; Strauss, I.; Granata, G.; Fernandez, E.; Rossini, P. M.; Barbaro, M.; Yoshida, K.; Jensen, W.; Divoux, J.-L.; Guiraud, D.; Micera, S.; Stieglitz, T.

10.1101/653964 — bioengineering — Posted on 2019-05-29

427 Highly-connected, non-redundant microRNAs functional control in breast cancer molecular subtypes

de Anda-Jauregui, G.; Espinal-Enriquez, J.; Hernandez-Lemus, E.

10.1101/652354 — genomics — Posted on 2019-05-29

428 An inordinate fondness for species with intermediate dispersal abilities

Ashby, B.; Shaw, A.; Kokko, H.

10.1101/644872 — evolutionary biology — Posted on 2019-05-29

429 Costs and benefits of giant sperm and sperm storage organs in Drosophila melanogaster

Zajitschek, S. R. K.; Zajitschek, F.; Josway, S.; Shabeeb, R.; Manier, M.

10.1101/652248 — evolutionary biology — Posted on 2019-05-29

430 A mutant form of Dmc1 that bypasses the requirement for accessory protein Mei5-Sae3 reveals independent activities of Mei5-Sae3 and Rad51 in Dmc1 filament stability

Bishop, D. K.; Reitz, D.; Grubb, J.

10.1101/652636 — genetics — Posted on 2019-05-29

431 Vaccination against the digestive enzyme Cathepsin B using a YS1646 Salmonella enterica Typhimurium vector provides almost complete protection against Schistosoma mansoni challenge in a mouse model

Hassan, A. S.; Zelt, N. H.; Perera, D. J.; Ndao, M.; Ward, B. J.

10.1101/652644 — immunology — Posted on 2019-05-29

432 Prevalence of coronary artery disease risk factors among fire-fighters in Cape Town, South Africa

Leach, L.; Achmat, G.; November, R. V.

10.1101/652503 — epidemiology — Posted on 2019-05-29

433 A systems biology-based molecular model of the protein kinase C life cycle

Aslam, N.; Alvi, F.

10.1101/652628 — systems biology — Posted on 2019-05-29

434 Low handgrip strength is closely associated with anemia among adults: A cross-sectional study using Korea National Health and Nutrition Examination Survey (KNHANES)

Gi, Y.-m.; Jung, B.; Kim, K.-W.; Cho, J.-H.; Ha, I.-H.

10.1101/652545 — epidemiology — Posted on 2019-05-29

435 The dynamics of motor learning through the formation of internal models

Pierella, C.; Casadio, M.; Solla, S. A.; Mussa-Ivaldi, F. A.

10.1101/652727 — neuroscience — Posted on 2019-05-29

436 Translational regulation of protrusion-localized RNAs involves silencing and clustering after transport

Moissoglu, K.; Yasuda, K.; Wang, T.; Chrisafis, G.; Mili, S.

10.1101/651810 — cell biology — Posted on 2019-05-29

437 Ubiquitination of the yeast receptor Atg32 modulates mitophagy

Vigie, P.; Gonzalez, C.; Manon, S.; Bhatia-Kissova, I.; Camougrand, N.

10.1101/652933 — cell biology — Posted on 2019-05-29

438 Hydrogel platform for in vitro three-dimensional assembly of human stem cell-derived β cells and endothelial cells

Augsornworawat, P.; Velazco-Cruz, L.; Song, J.; Millman, J. R.

10.1101/653378 — bioengineering — Posted on 2019-05-29

439 Cotranslational folding cooperativity of contiguous domains of α-spectrin

Kemp, G.; Nilsson, O. B.; Tian, P.; Best, R. B.; Von Heijne, G.

10.1101/653360 — biochemistry — Posted on 2019-05-29

440 Selective autophagy, lipophagy and mitophagy, in the Harderian gland along the estrous cycle: a potential retrieval effect of melatonin

Garcia-Macia, M.; Santos-Ledo, A.; Caballero, B.; Rubio-Gonzalez, A.; de Luxan-Delgado, B.; Potes, Y.; Rodriguez-gonzalez, S.; Boga, J. A.; Coto-Montes, A.

10.1101/652222 — cell biology — Posted on 2019-05-29

441 Identification of genes required for apical protein trafficking in Drosophila photoreceptor cells

Tepass, U.; Laffafian, A.

10.1101/653469 — cell biology — Posted on 2019-05-29

442 The Deubiquitinating Enzyme USP37 Stabilizes CHK1 to Promote the Cellular Response to Replication Stress

Singh, M.; Burrows, A. C.; Torres, A. E.; Pal, D.; Stromberg, B. R.; Insinna, C.; Dickson, A. S.; Westlake, C. J.; Summers, M. K.

10.1101/652891 — cell biology — Posted on 2019-05-29

443 Centrin-anchored hydrodynamic shape changes underpin active nuclear rerouting in branched hyphae of an oomycete pathogen

Evangelisti, E.; Shenhav, L.; Yunusov, T.; Le Naour--Vernet, M.; Rink, P.; Schornack, S.

10.1101/652255 — cell biology — Posted on 2019-05-29

444 Aggregated and hyperstable damage-associated molecular patterns are released during ER stress to modulate immune function

Andersohn, A.; Garcia, I.; Fan, Y.; Thompson, M. C.; Akimzhanov, A. M.; Abdullahi, A.; Jeschke, M. G.; Boehning, D.

10.1101/652990 — cell biology — Posted on 2019-05-29

445 eIF3 promotes early translation elongation to ensure mitochondrial homeostasis and skeletal muscle health

Lin, Y.; Li, F.; Huang, L.; Duan, H.; Fang, J.; Sun, L.; Xing, X.; Tian, G.; Cheng, Y.; Yang, X.; Wolf, D. A.

10.1101/651240 — cell biology — Posted on 2019-05-29

446 N-terminal ubiquitination of amyloidgenic proteins triggers removal of their oligomers by the proteasome holoenzyme

Ye, Y.; Klenerman, D.; Finley, D.

10.1101/653287 — biochemistry — Posted on 2019-05-29

447 Identification of a Mitofusin specificity region that confers unique activities to Mfn1 and Mfn2

Sloat, S. R.; Whitley, B. N.; Engelhart, E. A.; Hoppins, S.

10.1101/651851 — biochemistry — Posted on 2019-05-29

448 MCH4 is a multicopy suppressor of glycine toxicity in Saccharomyces cerevisiae

Melnykov, A. V.; Elson, E. L.

10.1101/653444 — biochemistry — Posted on 2019-05-29

449 Shared genetic etiology between obsessive-compulsive disorder, obsessive-compulsive symptoms in the population, and insulin signaling

Bralten, J.; Widomska, J.; De Witte, W.; Yu, D.; Mathews, C. A.; Scharf, J. M.; Buitelaar, J.; Crosbie, J.; Schachar, R.; Arnold, P.; Lemire, M.; Burton, C. L.; Franke, B.; Poelmans, G.

10.1101/608034 — genetics — Posted on 2019-05-28

450 Genesis and Gappa: Processing, Analyzing and Visualizing Phylogenetic (Placement) Data

Czech, L.; Barbera, P.; Stamatakis, A.

10.1101/647958 — bioinformatics — Posted on 2019-05-28

451 A dual role for peripheral GDNF signaling in nociception and cardiovascular reflexes

Queme, L. F.; Weyler, A. A.; Cohen, E. R.; Hudgins, R. C.; Jankowski, M. P.

10.1101/627521 — neuroscience — Posted on 2019-05-28

452 Thresholds for post-rebound SHIV control after CCR5 gene-edited autologous hematopoietic cell transplantation

Cardozo-Ojeda, E. F.; Duke, E. R.; Peterson, C. W.; Reeves, D. B.; Mayer, B. T.; Kiem, H.-P.; Schiffer, J. T.

10.1101/629717 — microbiology — Posted on 2019-05-28

453 Lexical landscapes as large in silico data forexamining advanced properties of fitness landscapes

Meszaros, V. A.; Miller-Dickson, M.; Ogbunugafor, C. B.

10.1101/640151 — evolutionary biology — Posted on 2019-05-28

454 Severity Index for Suspected Arbovirus (SISA): machine learning for accurate prediction of hospitalization in subjects suspected of arboviral infection

Sippy, R.; Farrell, D. F.; Lichtenstein, D.; Nightingale, R.; Harris, M.; Toth, J.; Hantztidiamantis, P.; Usher, N.; Cueva, C.; Barzallo Aguilar, J.; Puthumana, A.; Endy, T.; Ryan, S. J.; Stewart-Ibarra, A. M.

10.1101/647206 — epidemiology — Posted on 2019-05-28

455 Gut microbiome activity contributes to individual variation in glycemic response in adults

Tily, H.; Perlina, A.; Patridge, E.; Gline, S.; Genkin, M.; Gopu, V.; Lindau, H.; Sjue, A.; Klitgord, N.; Vuyisich, M.; Messier, H.; Banavar, G. S.

10.1101/641019 — systems biology — Posted on 2019-05-28

456 Transient perturbation of the left temporal cortex evokes plasticity-related reconfiguration of the lexical network

Klaus, J.; Schutter, D. J. L. G.; Piai, V.

10.1101/562827 — neuroscience — Posted on 2019-05-28

457 ASSEMBLY MECHANISMS OF NEOTROPICAL BUTTERFLY COMMUNITIES ALONG AN ENVIRONMENTAL GRADIENT

Checa, M. F.; Donoso, D.; Levy, E.; Mena, S.; Rodriguez, J.; Willmott, K.

10.1101/632067 — ecology — Posted on 2019-05-28

458 Antitumor Activities and Cellular Changes Induced by TrkB Inhibition in Medulloblastoma

Thomaz, A.; Pinheiro, K. d. V.; Souza, B. K.; Gregianin, L.; Brunetto, A. L.; Brunetto, A. T.; de Farias, C. B.; Jaeger, M. d. C.; Ramaswamy, V.; Nor, C.; Taylor, M. D.; Roesler, R.

10.1101/566000 — cancer biology — Posted on 2019-05-28

459 Enabling high-accuracy long-read amplicon sequences using unique molecular identifiers and Nanopore sequencing

Karst, S. M.; Ziels, R.; Kirkegaard, R. H.; Albertsen, M.

10.1101/645903 — molecular biology — Posted on 2019-05-28

460 Complete genome assembly of clinical multidrug resistant Bacteroides fragilis isolates enables comprehensive identification of antimicrobial resistance genes and plasmids

Sydenham, T. V.; Overballe-Petersen, S.; Hasman, H.; Wexler, H.; Kemp, M.; Justesen, U. S.

10.1101/633602 — microbiology — Posted on 2019-05-28

461 StereoMate: A Stereological and Automated Analysis Platform for Assessing Histological Labelling in Cleared Tissue Specimens

West, S. J.; Bennett, D. L.

10.1101/648337 — neuroscience — Posted on 2019-05-28

462 Androgens enhance adult hippocampal neurogenesis in males but not females in an age-dependent manner

Duarte-Guterman, P.; Hamson, D.; Lieblich, S. E.; Wainwright, S.; Chow, C.; Chaiton, J.; Watson, N. V.; Galea, L. A.

10.1101/539296 — neuroscience — Posted on 2019-05-28

463 Castration-mediated IL-8 Promotes Myeloid Infiltration and Prostate Cancer Progression

Lopez-Bujanda, Z. A.; Haffner, M. C.; Chaimowitz, M. G.; Chowdhury, N.; Venturini, N. J.; Obradovic, A.; Hansen, C. S.; Jackow, J.; Sfanos, K. S.; Bieberich, C. J.; Hurley, P. J.; Selby, M. J.; Korman, A. J.; Christiano, A. M.; De Marzo, A. M.; Drake, C. G.

10.1101/651083 — immunology — Posted on 2019-05-28

464 Improved assembly and variant detection of a haploid human genome using single-molecule, high-fidelity long reads

Vollger, M. R.; Logsdon, G. A.; Audano, P. A.; Sulovari, A.; Porubsky, D.; Peluso, P.; Wenger, A. M.; Concepcion, G. T.; Kronenberg, Z. N.; Munson, K. M.; Baker, C.; Sanders, A. D.; Spierings, D. C. J.; Lansdorp, P. M.; Surti, U.; Hunkapiller, M. W.; Eichler, E. E.

10.1101/635037 — genomics — Posted on 2019-05-28

465 Regional climate affects salmon lice population dynamics, stage structure, and management

Hurford, A.; Wang, X.; Zhao, X.-Q.

10.1101/574830 — ecology — Posted on 2019-05-28

466 The BLIMP1 - EZH2 nexus in a non-Hodgkin lymphoma

Anderson, K. J.; Osvaldsdottir, A. B.; Atzinger, B.; Traustadottir, G. A.; Nolling Jensen, K.; Larusdottir, A. E.; Bergthorsson, J. T.; Harthardottir, I.; Magnusdottir, E.

10.1101/606749 — cancer biology — Posted on 2019-05-28

467 MEK1/2 in Rhabdomyosarcoma

Crawford, K. A.; Cleary, M. M.; Ricker, C. A.; Svalina, M. N.; Shern, J. F.; Chen, H.-I. H.; Berlow, N. E.; Keller, C. A.; Li, G. A.

10.1101/629766 — cancer biology — Posted on 2019-05-28

468 PureseqTM: Efficient and accurate prediction of transmembrane topology from amino acid sequence only

Wang, Q.; Ni, C.; Li, Z.; Li, X.; Han, R.; Zhao, F.; Xu, J.; Gao, X.; Wang, S.

10.1101/627307 — bioinformatics — Posted on 2019-05-28

469 Robust estimation of sulcal morphology

Madan, C. R.

10.1101/452789 — neuroscience — Posted on 2019-05-28

470 Impact of precisely-timed inhibition of gustatory cortex on taste behavior depends on single-trial ensemble dynamics

Mukherjee, N.; Wachutka, J.; Katz, D. B.

10.1101/486043 — neuroscience — Posted on 2019-05-28

471 Hippocampal subfields revealed through unfolding and unsupervised clustering of laminar and morphological features in 3D BigBrain

DeKraker, J.; Lau, J. C.; Ferko, K. M.; Khan, A.; Kohler, S.

10.1101/599571 — neuroscience — Posted on 2019-05-28

472 Thermal regimes, but not mean temperatures, drive patterns of rapid climate adaptation at a continent-scale: evidence from the introduced European earwig across North America

Tourneur, J.-C.; Meunier, J.

10.1101/550319 — evolutionary biology — Posted on 2019-05-28

473 Super-resolution modularity analysis shows polyhedral caveolin-1 oligomers combine to form scaffolds and caveolae

Khater, I. M.; Liu, Q.; Chou, K. C.; Hamarneh, G.; Nabi, I. R.

10.1101/495382 — cell biology — Posted on 2019-05-28

474 EpiSmokEr: A robust classifier to determine smoking status from DNA methylation data

Bollepalli, S.; Korhonen, T.; Kaprio, J.; Ollikainen, M.; Anders, S.

10.1101/487975 — bioinformatics — Posted on 2019-05-28

475 Oxidation state dependent conformational changes of HMGB1 regulates the formation of the CXCL12/HMGB1 heterocomplex

Fassi, E. M. A.; Sgrignani, J.; D'Agostino, G.; Cecchinato, V.; Garofalo, M.; Grazioso, G.; Uguccioni, M.; Cavalli, A.

10.1101/555946 — biochemistry — Posted on 2019-05-28

476 High-dimensional Bayesian network inference from systems genetics data using genetic node ordering

Wang, L.; Audenaert, P.; Michoel, T.

10.1101/501460 — systems biology — Posted on 2019-05-28

477 Implementation of an antibody validation procedure: Application to the major ALS/FTD disease gene C9ORF72

Laflamme, C.; McKeever, P.; Kumar, R.; Schwartz, J.; Kolahdouzan, M.; Chen, C. X.- Q.; You, Z.; Benaliouad, F.; Gileadi, O.; McBride, H. M.; Durcan, T. M.; Edwards, A.; Healy, L. M.; Robertson, J.; McPherson, P.

10.1101/499350 — molecular biology — Posted on 2019-05-28

478 Adaptive metabolic strategies in consumer-resource models

Pacciani-Mori, L.; Giometto, A.; Suweis, S.; Maritan, A.

10.1101/385724 — biophysics — Posted on 2019-05-28

479 Origins, admixture dynamics and homogenization of the African gene pool in the Americas

Gouveia, M. H.; Borda, V.; Leal, T. P.; Moreira, R. G.; Bergen, A. W.; Aquino, M. M.; Araujo, G. S.; Araujo, N. M.; Kehdy, F. S. G.; Liboredo, R.; Machado, M.; Magalhaes, W. C. S.; Michelin, L. A.; Rodrigues, M. R.; Rodrigues-Soares, F.; Sant Anna, H. P.; Santolalla, M. L.; Scliar, M. O.; Soares-Souza, G.; Zamudio, R.; Zolini, C.; Dean, M.; Gilman, R. H.; Guio, H.; Rocha, J.; Pereira, A. C.; Barreto, M. L.; Horta, B. L.; Lima-Costa, M. F.; Mbulaiteye, S. M.; Chanock, S. J.; Tishkoff, S. A.; Yeager, M.; Tarazona-Santos, E.

10.1101/652701 — genetics — Posted on 2019-05-28

480 Phosphoproteomic identification of Xin as a novel requirement for skeletal muscle disuse atrophy

Li, Z.; Jensen, P.; Abrigo, J.; Henriquez-Olguin, C.; Gingrich, M.; Rytter, N.; Gliemann, L.; Richter, E. A.; Hawke, T.; Cabello-Verrugio, C.; Larsen, M. R.; Jensen, T. E.

10.1101/652479 — physiology — Posted on 2019-05-28

481 Modulation of emotion perception and memory via sub-threshold amygdala stimulation in humans

Bujarski, K.; Song, Y.; Kolankiewicz, S.; Wozniak, G.; Andrews, A.; Guillory, S.; Roberts, D.; Aronson, J.; Jobst, B.

10.1101/638767 — neuroscience — Posted on 2019-05-28

482 G-quadruplexes sequester free heme in living cells

Graybuck, L. T.; Puig Lombardi, E.; Verga, D.; Guetta, C.; Nicolas, A.; Teulade-Fichou, M.-P.; Londono-Vallejo, A.; Maizels, N.

10.1101/652297 — genomics — Posted on 2019-05-28

483 Multi-ethnic analysis shows genetic risk and environmental predictors interact to influence 25(OH)D concentration and optimal vitamin D intake

Hatchell, K. E.; Lu, Q.; Mares, J. A.; Michos, E. D.; Wood, A. C.; Engelman, C. D.

10.1101/652941 — genomics — Posted on 2019-05-28

484 Prepubertal gonadectomy reveals sex differences in approach-avoidance behavior in adult mice

Delevich, K.; Hall, C.; Boivin, J. R.; Piekarski, D.; Zhang, Y.; Wilbrecht, L.

10.1101/638916 — animal behavior and cognition — Posted on 2019-05-28

485 Estimation of the Hemoglobin Glycation Rate Constant

Kameyama, M.; Okumiya, T.; Tokuhiro, S.; Matsumura, Y.; Matsui, H.; Ono, Y.; Iwasaka, T.; Hiratani, K.; Koga, M.

10.1101/652818 — physiology — Posted on 2019-05-28

486 PP2ACdc55 dephosphorylates Pds1 to inhibit spindle elongation

Khondker, S.; Kajjo, S.; Chandler-Brown, D.; Skotheim, J.; Rudner, A.; Ikui, A. E.

10.1101/648386 — cell biology — Posted on 2019-05-28

487 Hormonal regulation of Semaphorin 7a in ER+ breast cancer drives therapeutic resistance

Crump, L. S.; Wyatt, G. L.; Porter, W. W.; Richer, J.; Lyons, T. R.

10.1101/650135 — cancer biology — Posted on 2019-05-28

488 The polymorphic PolyQ tail protein of the Mediator Complex, Med15, regulates variable response to stress

Gallagher, J. E. G.; Nassif, C.; Pupo, A.

10.1101/652669 — molecular biology — Posted on 2019-05-28

489 Exploring Conformational Transitions and Free Energy Profiles of Proton Coupled Oligopeptide Transporters

Batista, M. R. B.; Watts, A.; Costa-Filho, A. J.

10.1101/651646 — biophysics — Posted on 2019-05-28

490 Dynamical decoration of stabilized-microtubules by tau-proteins

Hervy, J.; Bicout, D. J.

10.1101/638858 — biophysics — Posted on 2019-05-28

491 Automated cryo-EM sample preparation by pin-printing and jet vitrification

Ravelli, R. B. G.; Nijpels, F. J. T.; Henderikx, R. J. M.; Weissenberger, G.; Thewessem, S.; Gijsbers, A.; Beulen, B. W. A. M. M.; Lopez-Iglesias, C.; Peters, P.

10.1101/651208 — biophysics — Posted on 2019-05-28

492 A possible role for epigenetic feedback regulation in the dynamics of the Epithelial-Mesenchymal Transition (EMT)

Jia, W.; Deshmukh, A.; Mani, S. A.; Jolly, M. K.; Levine, H.

10.1101/651620 — biophysics — Posted on 2019-05-28

493 DNA mismatch repair haploinsufficiency leads to low-level microsatellite instability in normal mouse intestine

Shrestha, K. S.; Tuominen, M. M.; Kauppi, L.

10.1101/652198 — molecular biology — Posted on 2019-05-28

494 Impact of rare and common genetic variants on diabetes diagnosis by hemoglobin A1c in multi-ancestry cohorts: The Trans-Omics for Precision Medicine Program.

Sarnowski, C.; Leong, A.; Raffield, L. M.; Wu, P.; de Vries, P. S.; DiCorpo, D.; Guo, X.; Xu, H.; Liu, Y.; Zheng, X.; Hu, Y.; Brody, J. A.; Goodarzi, M. O.; Hidalgo, B. A.; Highland, H. M.; Jain, D.; Liu, C.-T.; Naik, R. P.; Perry, J. A.; Porneala, B. C.; Selvin, E.; Wessel, J.; Psaty, B. M.; Curran, J. E.; Peralta, J. M.; Blangero, J.; Kooperberg, C.; Mathias, R.; Johnson, A. D.; Reiner, A. P.; Mitchell, B. D.; Cupples, L. A.; Vasan, R. S.; Correa, A.; Morrison, A. C.; Boerwinkle, E.; Rotter, J. I.; Rich, S. S.; Manning, A. K.; Dupuis, J.; Meigs, J. B.; the TOPMed Diabetes working group, ; t

10.1101/643932 — genetics — Posted on 2019-05-28

495 Evaluating FAIR Maturity Through a Scalable, Automated, Community-Governed Framework

Wilkinson, M. D.; Dumontier, M.; Sansone, S.-A.; da Silva Santos, L. O. B.; Prieto Godoy, M.; Batista, D.; McQuilton, P.; Kuhn, T.; Rocca-Serra, P.; Crosas, M.; Schultes, E.

10.1101/649202 — bioinformatics — Posted on 2019-05-28

496 Biomass, abundances, and abundance and range size relationship of birds along a rainforest elevational gradient in Papua New Guinea

Sam, K.; Koane, B.

10.1101/651422 — ecology — Posted on 2019-05-28

497 Tyr1 phosphorylation promotes the phosphorylation of Ser2 on the C-terminal domain of RNA polymerase II by P-TEFb

Zhang, Y.; Mayfield, J. E.; Irani, S.; Escobar, E. E.; Zhang, Z.; Burkholder, N. T.; Robinson, M. R.; Mehaffey, M. R.; Sipe, S. N.; Yang, W.; Prescott, N. A.; Kathuria, K.; Liu, Z.; Brodbelt, J.

10.1101/652214 — biochemistry — Posted on 2019-05-28

498 Thermostability improvement of Aspergillus awamori glucoamylase via directed evolution of its gene located on episomal expression vector in Pichia pastoris

Schmidt, A.; Shvetsov, A.; Soboleva, E.; Kil, Y.; Sergeev, V.; Surzhik, M.

10.1101/652164 — molecular biology — Posted on 2019-05-28

499 Identifying miRNA synergism using multiple-intervention causal inference

Zhang, J.; Pham, V. V. H.; Liu, L.; Xu, T.; Truong, B.; Li, J.; Le, T. D.

10.1101/652180 — bioinformatics — Posted on 2019-05-28

500 Genetic analysis and ecological niche modeling delimit species boundary of the Przewalski’s scorpion (Scorpiones: Buthidae) in arid Asian inland

Zhang, X.-S.; Liu, G.-M.; Zhang, D.-X.; Shi, C.-M.

10.1101/652024 — zoology — Posted on 2019-05-28

501 Accelerated diversification correlated with functional traits shapes extant diversity of the early divergent angiosperm family Annonaceae

Xue, B.; Guo, X.; Landis, J. B.; Sun, M.; Tang, C. C.; Soltis, P. S.; Soltis, D. E.; Saunders, R. M. K.

10.1101/652065 — evolutionary biology — Posted on 2019-05-28

502 DNA methylation facilitates local adaptation and adaptive transgenerational plasticity

Heckwolf, M. J.; Meyer, B. S.; Haesler, R.; Hoeppner, M. P.; Eizaguirre, C.; Reusch, T. B.

10.1101/649574 — evolutionary biology — Posted on 2019-05-28

503 Numerical Investigation of Drug Transport from Blood Vessels to Tumor Tissue Using a Tumor-Vasculature-on-a-Chip

Li, W.; Wang, H.-F.; Li, Z.-Y.; Wang, T.; Zhao, C.-X.

10.1101/652099 — bioengineering — Posted on 2019-05-28

504 On the impact of biomass composition in constraint-based flux analysis

Lakshmanan, M.; Long, S.; Ang, K. S.; Lewis, N. E.; Lee, D.-Y.

10.1101/652040 — systems biology — Posted on 2019-05-28

505 Inhibitory interneurons distribute widely across the mouse thalamus and form ontogenetic spatial clusters

Jager, P.; Calpin, P.; Durmishi, X.; Shimogori, T.; Delogu, A.

10.1101/651745 — neuroscience — Posted on 2019-05-28

506 Type-3 Secretion System-induced pyroptosis protects Pseudomonas against cell-autonomous immunity

Eren, E.; Planes, R.; Buyck, J. M.; Bordignon, P.-J.; Colom, A.; Cunrath, O.; Dreier, R. F.; Santos, J. C.; Duplan-Eche, V.; Näser, E.; Peixoto, A.; Bumann, D.; Cougoule, C.; Coste, A.; Neyrolles, O.; Broz, P.; Meunier, E.

10.1101/650333 — immunology — Posted on 2019-05-28

507 Confounding by indication of the safety of de-escalation in community-acquired pneumonia: a simulation study embedded in a prospective cohort.

van Heijl, I.; Schweitzer, V.; Boel, E.; Oosterheert, J. J.; Huijts, S.; Dorigo, W.; van der Linden, P.; Bonten, M.; van Werkhoven, C.

10.1101/652610 — epidemiology — Posted on 2019-05-28

508 Knowledge, Attitude and Practice of Breast Cancer Screening among women attending primary care centers in Abu Dhabi : A cross Sectional Study

AlBlooshi, N.

10.1101/652552 — scientific communication and education — Posted on 2019-05-28

509 Degradations of tannin and saponin during co-composting of shell and seed cake of Camellia oleifera Abel

Zhang, J.; Ying, Y.; Yao, X.

10.1101/652560 — pathology — Posted on 2019-05-28

510 Risk of complications among diabetics self-reporting oral health status in Canada: A population-based cohort study

Kaura, K.; Rosella, L.; Singhal, S.; Quinonez, C.

10.1101/652529 — epidemiology — Posted on 2019-05-28

511 Resolving kinesin stepping: one head at a time

Stepp, W. L.; Ökten, Z.

10.1101/651281 — biophysics — Posted on 2019-05-28

512 Spectral measure of color variation of black - orange - black (BOB) pattern in small parasitic wasps (Hymenoptera: Scelionidae), a statistical approach

Mora Castro, R.; Hernandez-Jimenez, M.; Alfaro-Cordoba, M.; Avendano-Soto, E.; Hanson, P. E.

10.1101/652594 — biophysics — Posted on 2019-05-28

513 Biological Control Potential of Ectomycorrhizal Fungi against Fusarium circinatum on Pinus patula seedlings

Chartier Fitzgerald, V.; Dames, J. F.; Hawley, G.

10.1101/652511 — microbiology — Posted on 2019-05-28

514 Effects of Five Products on Gut Microbiota and Short-Chain Fatty Acids of Obese Rats

Tan, S.; Wang, J.

10.1101/652495 — microbiology — Posted on 2019-05-28

515 STK11 is required for the normal program of ciliated cell differentiation in airways

Chu, Q.; Yao, C.; Qi, X.; Stripp, B.; Tang, N.

10.1101/652107 — developmental biology — Posted on 2019-05-28

516 The Human Dynamic Clamp reveals the fronto-parietal network linking real-time social coordination and cognition

Dumas, G.; Moreau, Q.; Tognoli, E.; Kelso, J. A. S.

10.1101/651232 — neuroscience — Posted on 2019-05-27

517 Stimulus presentation rates affect performance but not the acquired knowledge -- Evidence from procedural learning

Kiss, M.; Nemeth, D.; Janacsek, K.

10.1101/650598 — neuroscience — Posted on 2019-05-27

518 Modification of oxygen consumption and blood flow in mouse somatosensory cortex by cell-type-specific neuronal activity

Dahlqvist, M.; Thomsen, K.; Postnov, D.; Lauritzen, M.

10.1101/651224 — neuroscience — Posted on 2019-05-27

519 Introgression of Austrian fire-bellied toads (Bombina bombina) into northern German populations confirmed by complete mitochondrial genomes and transcriptome-wide Single Nucleotide Polymorphisms (SNPs)

De Cahsan, B.; Westbury, M. V.; Paraskevopoulou, S.; Drews, H.; Ott, M.; Gollmann, G.; Tiedemann, R.

10.1101/651695 — evolutionary biology — Posted on 2019-05-27

520 Papillary renal cell carcinomas rewire glutathione metabolism and are deficient in anabolic glucose synthesis

Alahmad, A.; Paffrath, V.; Clima, R.; Busch, J. F.; Rabien, A.; Kilic, E.; Villegas, S.; Timmermann, B.; Attimonelli, M.; Jung, K.; Meierhofer, D.

10.1101/651265 — cancer biology — Posted on 2019-05-27

521 Data-Driven Design of Diagnostic Kits and Therapeutic Peptides

Salawu, E. O.; Tsai, C.-Y.; Li, H.; Lin, G.-Y.; Kuo, T.-Y.; Sharma, A.; Hu, K.-D.; Voon, L.; Lu, Y.-L.; Ke, X.; Lan, C.-Y.; Fu, H.-W.; Yang, L.-W.

10.1101/651315 — bioinformatics — Posted on 2019-05-27

522 In-vitro and in-vivo Characterization of a Multi-Stage Enzyme-Responsive Nanoparticle-in-Microgel Pulmonary Drug Delivery System

Mejias, J. C.; Roy, K.

10.1101/650911 — bioengineering — Posted on 2019-05-27

523 Higher Meta-cognitive Ability Predicts Less Reliance on Over Confident Habitual Learning System

Ershadmanesh, S.; Miandari, M.; Vahabie, A.-H.; Nili Ahmadabadi, M.

10.1101/650556 — neuroscience — Posted on 2019-05-27

524 Microbiomes from feces vs. gut in aquatic vertebrates: distinct community compositions between substrates and preservation methods

Anslan, S.; Li, H.; Kunzel, S.; Vences, M.

10.1101/651612 — microbiology — Posted on 2019-05-27

525 Evaluation of Natural and Botanical Medicines for Activity against Growing and Non-growing Forms of B. burgdorferi

Feng, J.; Leone, J.; Schweig, S.; Zhang, Y.

10.1101/652057 — microbiology — Posted on 2019-05-27

526 TGFβ drives mitochondrial dysfunction in peripheral blood NK cells during metastatic breast cancer

Slattery, K.; Zaiatz-Bittencourt, V.; Woods, E.; Brennan, K.; Marks, S.; Chew, S.; Conroy, M.; Goggin, C.; Kennedy, J.; Finlay, D. K.; Gardiner, C. M.

10.1101/648501 — immunology — Posted on 2019-05-27

527 Genetically encoded intrabody sensors illuminate structural and functional diversity in GPCR-β-arrestin complexes

Baidya, M.; Kumari, P.; Dwivedi, H.; Ghosh, E.; Sokrat, B.; Sposini, S.; Pandey, S.; Stepniewski, T.; Selent, J.; Hanyaloglu, A.; Bouvier, M.; Shukla, A. K.

10.1101/651463 — cell biology — Posted on 2019-05-27

528 Host-microbe interactions in the chemosynthetic Riftia pachyptila symbiosis

Hinzke, T.; Kleiner, M.; Breusing, C.; Felbeck, H.; Haesler, R.; Sievert, S. M.; Schlueter, R.; Rosenstiel, P.; Reusch, T. B. H.; Schweder, T.; Markert, S.

10.1101/651323 — systems biology — Posted on 2019-05-27

529 Multilevel feedback architecture for adaptive regulation of learning in the insect brain

Eschbach, C.; Fushiki, A.; Winding, M.; Schneider-Mizell, C.; Shao, M.; Arruda, R.; Eichler, K.; Valdes-Aleman, J.; Ohyama, T.; Thum, A. S.; Gerber, B.; Fetter, R. D.; Truman, J. W.; Litwin-Kumar, A.; Cardona, A.; Zlatic, M.

10.1101/649731 — neuroscience — Posted on 2019-05-27

530 A Universal Nonparametric Event Detection Framework for Neuropixels Data

Chen, H.; Chen, S.; Deng, X.

10.1101/650671 — neuroscience — Posted on 2019-05-27

531 Classification of unlabelled observations in Species Distribution Modelling using Point Process Models.

Guilbault, E.; Renner, I.; Mahony, M.; Beh, E.

10.1101/651125 — ecology — Posted on 2019-05-27

532 Evidence for rapid phenotypic and behavioral change in a recently established cavefish population

McGaugh, S. E.; Weaver, S.; Gilbertson, E. N.; Garrett, B.; Rudeen, M. L.; Grieb, S.; Roberts, J.; Donny, A.; Marchetto, P.; Gluesenkamp, A. G.

10.1101/651406 — animal behavior and cognition — Posted on 2019-05-27

533 Spectral clustering in regression-based biological networks

Gaynor, S. M.; Lin, X.; Quackenbush, J.

10.1101/651950 — systems biology — Posted on 2019-05-27

534 Motor axon excitability measures in the rat tail are the same: awake or anaesthetized using sodium pentobarbital.

Jones, K. E.; Bennett, D. J.

10.1101/651927 — neuroscience — Posted on 2019-05-27

535 A Bayesian account of generalist and specialist formation under the Active Inference framework

Chen, A. G.; Benrimoh, D.; Parr, T.; Friston, K. J.

10.1101/644807 — neuroscience — Posted on 2019-05-27

536 Caenorhabditis elegans model for admixed proteinopathy of Huntington’s and Alzheimer-type

Kapulkin, W. J.

10.1101/648923 — neuroscience — Posted on 2019-05-27

537 Resistance is futile: A CRISPR homing gene drive targeting a haplolethal gene

Champer, J.; Yang, E.; Lee, Y. L.; Liu, J.; Clark, A. G.; Messer, P. W.

10.1101/651737 — genetics — Posted on 2019-05-27

538 PastView: a user-friendly interface to explore evolutionary scenarios

Chevenet, F.; Castel, G.; Jousselin, E.; Gascuel, O.

10.1101/651661 — evolutionary biology — Posted on 2019-05-27

539 Improving Convolutional Network Interpretability with Exponential Activations

Koo, P. K.; Ploenzke, M.

10.1101/650804 — bioinformatics — Posted on 2019-05-27

540 Root morphology and exudate availability is shaped by particle size and chemistry in Brachypodium distachyon

Sasse Schlaepfer, J.; Jordan, J.; De Raad, M.; Whiting, K.; Zhalnina, K.; Northen, T.

10.1101/651570 — plant biology — Posted on 2019-05-27

541 Pseudo-chromosome length genome assembly of a double haploid ‘Bartlett’ pear (Pyrus communis L.)

Linsmith, G.; Rombauts, S.; Montanari, S.; Deng, C. H.; Celton, J.-M.; Guerif, P.; Liu, C.; Lohaus, R.; Zurn, J. D.; Cestaro, A.; Bassil, N. V.; Bakker, L. V.; Schijlen, E.; Gardiner, S. E.; Lespinasse, Y.; Durel, C.-E.; Velasco, R.; Neale, D. B.; Chagne, D.; Van de Peer, Y.; Troggio, M.; Bianco, L.

10.1101/651778 — plant biology — Posted on 2019-05-27

542 Housing temperature influences exercise training adaptations in mice

Raun, S. H.; Henriquez-Olguin, C. H.; Karavaeva, I.; Ali, M.; Moller, L. L. V.; Kot, W.; Castro Mejia, J. L.; Nielsen, D. S.; Gerhart-Hines, Z.; Richter, E. A.; Sylow, L.

10.1101/651588 — physiology — Posted on 2019-05-27

543 Fate mapping via Ms4a3 expression history traces monocyte-derived cells

Liu, Z.; Gu, Y.; Chakarov, S.; Bleriot, C.; Chen, X.; Shin, A.; Huang, W.; Dress, R. J.; Dutertre, C. A.; Schlitzer, A.; Chen, J.; Wang, H.; Liu, Z.; Su, B.; Ginhoux, F.

10.1101/652032 — immunology — Posted on 2019-05-27

544 Skewed temperature dependence affects range and abundance in a warming world

Hurford, A.; Cobbold, C. A.; Molnar, P. K.

10.1101/408104 — ecology — Posted on 2019-05-27

545 PhenoGeneRanker: A Tool for Gene Prioritization Using Complete Multiplex Heterogeneous Networks

Dursun, C.; Shimoyama, N.; Shimoyama, M.; Schlappi, M.; Bozdag, S.

10.1101/651000 — bioinformatics — Posted on 2019-05-27

546 A deep learning-based approach for high-throughput hypocotyl phenotyping

Dobos, O.; Horvath, P.; Nagy, F.; Danka, T.; Andras, V.

10.1101/651729 — bioinformatics — Posted on 2019-05-27

547 Cyanogenic glucoside production in cassava: The comparable influences of varieties, soil moisture content and nutrient supply

Imakumbili, M. L. E.; Semu, E.; Semoka, J. M. R.; Abass, A.; Mkamilo, G.

10.1101/649236 — plant biology — Posted on 2019-05-27

548 Detecting Direct Oral Anticoagulants in Trauma Patients using Liquid Chromatography-Mass Spectrometry: a Novel Approach to Medication Reconciliation

Jayaraman, S.; DeAntonio, J. H.; Leichtle, S. W.; Han, J.; Liebrecht, L.; Contaifer, D.; Young, C.; Chou, C.; Staschen, J.; Doan, D.; Kumar, N. G.; Wolfe, L.; Nguyen, T.; Chenault, G.; Anand, R. J.; Bennett, J. D.; Ferrada, P.; Goldberg, S.; Procter, L. D.; Rodas, E. B.; Rossi, A. P.; Whelan, J. F.; Feeser, V. R.; Vitto, M. J.; Broering, B.; Hobgood, S.; Mangino, M.; Aboutanos, M.; Bachmann, L.; Wijesinghe, D. S.

10.1101/651075 — pharmacology and toxicology — Posted on 2019-05-27

549 Action of cocaine involves depletion of dopaminergic and serotonergic storage vesicles

Homberg, J. R.; Karel, P.; Meyer, F.; Rink, K.; van Hulten, J. A.; van Bakel, N. H. M.; de Mulder, E. L. W.; Caffino, L.; Fumagalli, F.; Jansen, J.; Masereeuw, R.; Martens, G. J. M.; Cools, A. R.; Verheij, M. M. M.

10.1101/651505 — neuroscience — Posted on 2019-05-27

550 Echo State Network models for nonlinear Granger causality

Duggento, A.; Guerrisi, M.; Toschi, N.

10.1101/651679 — neuroscience — Posted on 2019-05-27

551 Personality modulates brain responses to emotion in music: Comparing whole-brain and regions-of-variance approaches

Oudyk, K.; Burunat, I.; Brattico, E.; Toiviainen, P.

10.1101/651133 — neuroscience — Posted on 2019-05-27

552 Direct Pathway Neurons in Mouse Dorsolateral Striatum In Vivo Receive Stronger Synaptic Input than Indirect Pathway Neurons

Filipovic, M.; Ketzef, M.; Reig, R.; Aertsen, A.; Silberberg, G.; Kumar, A.

10.1101/651711 — neuroscience — Posted on 2019-05-27

553 The Adaptor Protein Nck1, but not Nck2, Mediates Shear Stress-Induced Endothelial Permeability.

Alfaidi, M.; Bhattarai, U.; Cockerham, E. D.; Orr, A. W.

10.1101/651687 — molecular biology — Posted on 2019-05-27

554 Population Health Genetic Screening for Tier 1 Inherited Diseases in Northern Nevada: 90% of At-Risk Carriers are Missed

Grzymski, J.; Elhanan, G.; Smith, E.; Rowan, C.; Slotnick, N.; Dabe, S.; Schlauch, K.; Read, R.; Metcalf, J.; Lipp, B.; Reed, H.; Levin, E.; Kao, J.; Rashkin, M.; Bowes, J.; Bolze, A.; Dunaway, K.; Washington, N.; Slonim, A.; Lu, J. T.

10.1101/650549 — genetics — Posted on 2019-05-27

555 Diverse strategies link growth rate and competitive ability in phytoplankton responses to changes in CO2 levels

Collins, S.; Schaum, C. E.

10.1101/651471 — evolutionary biology — Posted on 2019-05-27

556 Copulas reveal complex and informative dependencies propagating throughout ecology

Ghosh, S.; Sheppard, L. W.; Holder, M. T.; Loecke, T. E.; Reid, P. C.; Bever, J. D.; Reuman, D. C.

10.1101/650838 — ecology — Posted on 2019-05-27

557 Mitochondrial fusion defects caused by CMT2A disease-associated variants of Mfn2

Samanas, N. B.; Engelhart, E. A.; Hoppins, S.

10.1101/651877 — cell biology — Posted on 2019-05-27

558 High-throughput smFRET analysis of freely diffusing nucleic acid molecules and associated proteins

Segal, M.; Ingargiola, A.; Lerner, E.; Chung, S.; White, J. A.; Streets, A. M.; Weiss, S.; Michalet, X.

10.1101/651869 — biophysics — Posted on 2019-05-27

559 A possible role for epigenetic feedback regulation in the dynamics of the Epithelial-Mesenchymal Transition (EMT)

Jia, W.; Deshmukh, A.; Mani, S. A.; Jolly, M. K.; Levine, H.

10.1101/651620 — biophysics — Posted on 2019-05-27

560 Low support values and lack of reproducibility of molecular phylogenetic analysis of Copepoda orders

Mikhailov, K. V.; Ivanenko, V. N.

10.1101/650507 — zoology — Posted on 2019-05-27

561 Application of pharmacogenomics and bioinformatics to exemplify the utility of human ex vivo organoculture models in the field of precision medicine.

Cowan, K. M.; Macluskie, G.; Finch, M.; Palmer, C.; Hair, J.; Bylesjo, M.; Lynagh, S.; Brankin, P.; McNeil, M.; Low, C.; Mallinson, D.; Gourlay, E.; Child, H.; Cheyne, L.; Bunton, D.

10.1101/649376 — pharmacology and toxicology — Posted on 2019-05-27

562 Fast quantification of uncertainty in non-linear diffusion MRI models for artifact detection and more power in group studies

Harms, R. L.; Fritz, F. J.; Schoenmakers, S.; Roebroeck, A. J.

10.1101/651547 — neuroscience — Posted on 2019-05-27

563 Estimations of the weather effects on brain functions using functional MRI - a cautionary tale

Di, X.; Wolfer, M.; Kuhn, S. B.; Zhang, Z.; Biswal, B. B.

10.1101/646695 — neuroscience — Posted on 2019-05-27

Lerner, Y.; Scherf, S.; Katkov, M.; Hasson, U.; Behrmann, M.

10.1101/650887 — neuroscience — Posted on 2019-05-27

565 Language beyond the language system: dorsal visuospatial pathways support processing of demonstratives and spatial language during naturalistic fast fMRI

Rocca, R.; Coventry, K. R.; Tylen, K.; Staib, M.; Lund, T. E.; Wallentin, M.

10.1101/651257 — neuroscience — Posted on 2019-05-27

566 Velocity coupling of grid cell modules: stable embedding of a low dimensional variable in a high dimensional neural attractor

Mosheiff, N.; Burak, Y.

10.1101/651513 — neuroscience — Posted on 2019-05-27

567 Damped oscillations of the probability of random events followed by absolute refractory period

Paraskevov, A. V.; Minkin, A. S.

10.1101/649392 — neuroscience — Posted on 2019-05-27

568 Evolution in action: Habitat-transition leads to genome-streamlining in Methylophilaceae (Betaproteobacteriales)

Salcher, M. M.; Schaefle, D.; Kaspar, M.; Neuenschwander, S. M.; Ghai, R.

10.1101/651331 — microbiology — Posted on 2019-05-27

569 Localization of genetic determinants for pathogenicity of Maize dwarf mosaic virus and Bermudagrass southern mosaic virus

Mostafavi Neyshabouri, F. s.; Yamchi, A.; Sabbagh, S. K.; Masumi, M.

10.1101/651372 — microbiology — Posted on 2019-05-27

570 Dissecting the eQTL micro-architecture in Caenorhabditis elegans

Sterken, M. G.; Bevers, R. P. J.; Volkers, R. J. M.; Riksen, J. A. G.; Kammenga, J. E.; Snoek, L. B.

10.1101/651885 — genetics — Posted on 2019-05-27

571 Single-cell analysis of Non-CpG methylation dynamics and gene expression in human oocyte maturation

Yu, B.; Doni Jayavelu, N.; Battle, S.; Smith, T.; Zimmerman, S. E.; Mar, J. C.; Schimmel, T.; Cohen, J.; Hawkins, R. D.

10.1101/651141 — developmental biology — Posted on 2019-05-27

572 Streamlining effects of extra telomeric repeat on telomere folding revealed by fluorescence-force spectroscopy

Mitra, J.; Ha, T.

10.1101/651919 — biophysics — Posted on 2019-05-27

573 RF heating of deep brain stimulation implants in open-bore vertical MRI systems

Golestani Rad, L.; Lampman, D.; Kazemivalipour, E.; Habara, H.; Atalar, E.; Rosenow, J.; Pilitsis, J.; Kirsch, J.

10.1101/650960 — biophysics — Posted on 2019-05-27

574 Ultraefficient Unbiased Molecular Dynamics simulation of protein-ligand interactions: How profound yet affordable can it be?

Sohraby, F.; Aryapour, H.; Javaheri Moghadam, M.; Aliyar, M.

10.1101/650440 — bioinformatics — Posted on 2019-05-27

575 LiPLike: Towards gene regulatory network predictions of high-certainty

Magnusson, R.; Gustafsson, M.

10.1101/651596 — bioinformatics — Posted on 2019-05-27

576 MaxQuant software for ion mobility enhanced shotgun proteomics

Prianichnikov, N.; Koch, H.; Koch, S.; Lubeck, M.; Heilig, R.; Brehmer, S.; Fischer, R.; Cox, J.

10.1101/651760 — bioinformatics — Posted on 2019-05-27

577 Metric Learning on Expression Data for Gene Function Prediction

Makrodimitris, S.; Reinders, M.; van Ham, R.

10.1101/651042 — bioinformatics — Posted on 2019-05-27

578 To assemble or not to resemble -- A validated Comparative Metatranscriptomics Workflow (CoMW)

Anwar, M. Z.; Lanzen, A.; Bang-Andreasen, T.; Jacobsen, C. S.

10.1101/642348 — bioinformatics — Posted on 2019-05-27

579 The neurocognitive gains of diagnostic reasoning training using simulated interactive veterinary cases.

Nassar, M.

10.1101/650499 — neuroscience — Posted on 2019-05-27

580 Population-based neuroimaging reveals traces of childbirth in the maternal brain

de Lange, A.-M. G.; Kaufmann, T.; van der Meer, D.; Maglanoc, L. A.; Alnaes, D.; Moberget, T.; Douaud, G.; Andreassen, O.; Westlye, L. T.

10.1101/650952 — neuroscience — Posted on 2019-05-27

581 Individual heterogeneity in the functional network topography of medial prefrontal cortex

Toro-Serey, C.; Tobyne, S. M.; McGuire, J. T.

10.1101/651117 — neuroscience — Posted on 2019-05-27

582 Predictive analysis of patient recovery from cardiac-respiratory arrest

Floyrac, A.; Doumergue, A.; Kubis, N.; Holcman, D.

10.1101/650408 — neuroscience — Posted on 2019-05-27

583 jackalope: a swift, versatile phylogenomic and high-throughput sequencing simulator

Nell, L. A.

10.1101/650747 — genomics — Posted on 2019-05-27

584 Pyrus Communis chromosome scale assembly

Linsmith, G.; Rombauts, S.; Montanari, S.; Deng, C. H.; Celton, J.-M.; Guerif, P.; Liu, C.; Lohaus, R.; Zurn, J. D.; Cestaro, A.; Bassil, N. V.; Bakker, L. V.; Schijlen, E.; Gardiner, S. E.; Lespinasse, Y.; Durel, C.-E.; Velasco, R.; Neale, D.; Chagne, D.; Van de Peer, Y.; Troggio, M.; Bianco, L.

10.1101/643916 — bioinformatics — Posted on 2019-05-27

585 Feasibility of Automated Deep Learning Design for Medical Image Classification by Healthcare Professionals with Limited Coding Experience

Faes, L.; Wagner, S. K.; Fu, D. J.; Liu, X.; Korot, E.; Ledsam, J. R.; Back, T.; Chopra, R.; Pontikos, N.; Kern, C.; Moraes, G.; Schmid, M.; Sim, D.; Balaskas, K.; Bachmann, L.; Denniston, A.; Keane, P. A.

10.1101/650366 — bioinformatics — Posted on 2019-05-27

586 RNASeqR: an R package for automated two-group RNA-Seq analysis workflow

Chao, K.-H.; Hsiao, Y.-W.; Lee, Y.-F.; Lee, C.-Y.; Lai, L.-C.; Tsai, M.-H.; Lu, T.-P.; Chuang, E. Y.

10.1101/641324 — bioinformatics — Posted on 2019-05-27

587 Individual tree-crown detection in RGB imagery using semi-supervised deep learning neural networks

Weinstein, B.; Marconi, S.; Bohlman, S.; Zare, A.; White, E.

10.1101/532952 — ecology — Posted on 2019-05-27

588 Rock the Chalk: A five-year comparative analysis of a large microbiology lecture course reveals improved outcomes of chalk-talk compared to PowerPoint

Waters, C. M.

10.1101/644567 — scientific communication and education — Posted on 2019-05-27

589 Higher prevalence of homologous recombination-deficiency in lung squamous carcinoma from African Americans

Sinha, S.; Ryan, B. M.; Ruppin, E.; Lee, J. S.; Mitchell, K. A.; Zingone, A.; Sinha, N.; Schäffer, A. A.; Bowman, E.

10.1101/651794 — cancer biology — Posted on 2019-05-27

590 Genomics of clinal local adaptation in Pinus sylvestris under continuous environmental and spatial genetic setting

Tyrmi, J. S.; Vuosku, J.; Acosta, J. J.; Li, Z.; Sterck, L.; Savolainen, O.; Pyhajarvi, T.

10.1101/647412 — genomics — Posted on 2019-05-27

591 MAGICTRICKS: A tool for predicting transcription factors and cofactors that drive gene lists.

Roopra, A.

10.1101/492744 — bioinformatics — Posted on 2019-05-27

592 Resolving noise-control conflict by gene duplication

Chapal, M.; Mintzer, S.; Brodsky, S.; Carmi, M.; Barkai, N.

10.1101/634741 — systems biology — Posted on 2019-05-27

593 Decreased viability and neurite length in neural cells treated with chitosan-dextran sulfate nanocomplexes

Zamproni, L. N.; Teixeira, D.; Alliegro, A. A.; Maugeri, I. L.; des Rieux, A.; Porcionatto, M.

10.1101/616144 — neuroscience — Posted on 2019-05-27

594 Connecting Concepts in the Brain: Mapping Cortical Representations of Semantic Relations

Zhang, Y.; Han, K.; Worth, R.; Liu, Z.

10.1101/649939 — neuroscience — Posted on 2019-05-27

595 A demographic model for estimating the inter-division lifespans of stem cells and the subsequent transit amplifying stages

Gadre, P.; Chatterjee, S.; Varshney, B.; Mazumdar, D.; Gupta, S.; Nitsure, N.; Ray, K.

10.1101/521336 — developmental biology — Posted on 2019-05-27

596 Ultrastructure of the axonal periodic scaffold reveals a braid-like organization of actin rings

Vassilopoulos, S.; Gibaud, S.; Jimenez, A.; Caillol, G.; Leterrier, C.

10.1101/636217 — cell biology — Posted on 2019-05-27

597 DNA sequence is a major determinant of tetrasome dynamics

Ordu, O.; Lusser, A.; Dekker, N. H.

10.1101/629485 — biophysics — Posted on 2019-05-27

598 Effect of task and attention on neural tracking of speech

Vanthornhout, J.; Decruy, L.; Francart, T.

10.1101/568204 — neuroscience — Posted on 2019-05-27

599 The Dream Catcher experiment: Blinded analyses disconfirm markers of dreaming consciousness in EEG spectral power

Wong, W.; Noreika, V.; Moro, L.; Revonsuo, A.; Windt, J.; Valli, K.; Tsuchiya, N.

10.1101/643593 — neuroscience — Posted on 2019-05-27

600 MONET: a toolbox integrating top-performing methods for network modularisation

Tomasoni, M.; Gomez, S.; Crawford, J.; Zhang, W.; Choobda, S.; Marbach, D.; Bergmann, S.

10.1101/611418 — bioinformatics — Posted on 2019-05-27

601 A universal method for gene expression engineering

Lale, R.; Tietze, L.; Nesje, J.; Onsager, I.; Engelhardt, K.; Wong, C. F. A.; Akan, M.; Hummel, N.; Kalinowski, J.; Rueckert, C.; Hohmann-Marriott, M. F.

10.1101/644989 — bioengineering — Posted on 2019-05-27

602 Deep evolutionary origin of nematode SL2 trans-splicing revealed by genome-wide analysis of the Trichinella spiralis transcriptome

Wenzel, M. A.; Johnston, C.; Müller, B.; Pettitt, J.; Connolly, B.

10.1101/642082 — genomics — Posted on 2019-05-27

603 High-throughput microfluidic characterization of erythrocyte shape and mechanical variability

Reichel, F.; Mauer, J.; Nawaz, A. A.; Gompper, G.; Guck, J.; Fedosov, D. A.

10.1101/488189 — biophysics — Posted on 2019-05-27

604 Diverse conjugative elements silence natural transformation in Legionella species

Durieux, I.; Ginevra, C.; Attaiech, L.; Picq, K.; Juan, P.-A.; Jarraud, S.; Charpentier, X.

10.1101/623074 — microbiology — Posted on 2019-05-27

605 Coupling adaptive molecular evolution to phylodynamics using fitness-dependent birth-death models

Rasmussen, D. A.; Stadler, T.

10.1101/531525 — evolutionary biology — Posted on 2019-05-27

606 Ecological specialization under multidimensional tradeoffs

Amado, A.; Campos, P.

10.1101/492173 — ecology — Posted on 2019-05-27

607 Steric Regulation of Tandem Calponin Homology Domain Actin-Binding Affinity

Harris, A. R.; Belardi, B.; Jreij, P.; Wei, K.; Bausch, A.; Fletcher, D. A.

10.1101/598359 — biochemistry — Posted on 2019-05-27

608 Musical interaction is influenced by underlying predictive models and musical expertise

Heggli, O. A.; Konvalinka, I.; Kringelbach, M. L.; Vuust, P.

10.1101/440271 — neuroscience — Posted on 2019-05-27

609 Identifying conversion efficiency as a key mechanism underlying food webs evolution: A step forward, or backward?

Fritsch, C.; Billiard, S.; Champagnat, N.

10.1101/640433 — ecology — Posted on 2019-05-27

610 Decreased integrity of exercise-induced plasma cell free nuclear DNA - negative association with the increased oxidants production by circulating phagocytes

Stawski, R.; Walczak, K.; Perdas, E.; Włodarczyk, A.; Sarniak, A.; Kosielski, P.; Meissner, P.; Budlewski, T.; Padula, G.; Nowak, D.

10.1101/432237 — molecular biology — Posted on 2019-05-27

611 Artificial Intelligence and Synthesis in Ecology and Evolution

Desjardins-Proulx, P.; Poisot, T.; Gravel, D.

10.1101/161125 — scientific communication and education — Posted on 2019-05-27

612 Systematic Analysis of Targets of Pumilio (PUM)-Mediated mRNA Decay Identifies a Role of PUM1 in Regulating DNA Damage Response Pathway

Yamada, T.; Imamachi, N.; Imamura, K.; Kawamura, T.; Suzuki, Y.; Nagahama, M.; Akimitsu, N.

10.1101/387381 — molecular biology — Posted on 2019-05-27

613 Bacterial swarming reduces Proteus mirabilis and Vibrio parahaemolyticus cell stiffness and increases β-lactam susceptibility

Auer, G. K.; Oliver, P. M.; Rajendram, M.; Lin, T.-Y.; Yao, Q.; Jensen, G. J.; Weibel, D. B.

10.1101/275941 — microbiology — Posted on 2019-05-27

614 Prediction performance of a cardiovascular risk assessment tool using Stanford EHR data repository

Rezaee, M.; Takeh, A.; Putrenko, I.; Ganna, A.; Ingelsson, E.

10.1101/648956 — bioinformatics — Posted on 2019-05-27

615 Accelerating Sequence Alignment to Graphs

Jain, C.; Misra, S.; Zhang, H.; Dilthey, A.; Aluru, S.

10.1101/651638 — bioinformatics — Posted on 2019-05-27

616 Reconstruction of networks with direct and indirect genetic effects

Kruijer, W.; Behrouzi, P.; Bustos Korts, D.; Rodriguez-Alvarez, M. X.; Mahmoudi, S. M.; Yandell, B.; Wit, E.; Van Eeuwijk, F.

10.1101/646208 — genetics — Posted on 2019-05-27

617 Evaluation of copy number burden in specific epilepsy types from a genome-wide study of 18,564 subjects

Niestroj, L.-M.; Howrigan, D. P.; Perez, E.; Saarentaus, E.; Nuernberg, P.; Stevelink, R.; Daly, M.; Palotie, A.; Lal, D.; Epi25 Collaborative,

10.1101/651299 — genetics — Posted on 2019-05-27

618 Morphology and development of the Portuguese man of war, Physalia physalis

Munro, C.; Vue, Z.; Behringer, R. R.; Dunn, C. W.

10.1101/645465 — zoology — Posted on 2019-05-27

619 MitoImpute: A Snakemake pipeline for imputation of mitochondrial genetic variants

McInerney, T. W.; Fulton-Howard, B.; Patterson, C.; Paliwal, D.; Jermiin, L. S.; Patel, H. R.; Swerdlow, R. H.; Pa, J.; Goate, A. M.; Easteal, S.; Andrews, S. J.

10.1101/649293 — genomics — Posted on 2019-05-27

620 Resting brain fluctuations are intrinsically coupled to visual response dynamics

Belloy, M. E.; Billings, J.; Abbas, A.; Kashyap, A.; Pan, W.-j.; Hinz, R.; Vanreusel, V.; Vanaudekerke, J.; Van der Linden, A.; Keilholz, S. D.; Verhoye, M.; Keliris, G. A.

10.1101/650291 — neuroscience — Posted on 2019-05-27

621 Structural basis of Q-dependent antitermination

Yin, Z.; Kaelber, J.; Ebright, R. H.

10.1101/651190 — molecular biology — Posted on 2019-05-27

622 Dual functionality of the TasA amyloid protein in Bacillus physiology and fitness on the phylloplane

Camara-Almiron, J.; Navarro, Y.; Magno-Perez-Bryan, M. C.; Molina-Santiago, C.; Pearson, J. R.; Diaz-Martinez, L.; de Vicente, A.; Perez-Garcia, A.; Romero, D.

10.1101/651356 — microbiology — Posted on 2019-05-27

623 Castration-mediated IL-8 Promotes Myeloid Infiltration and Prostate Cancer Progression

10.1101/651083 — cancer biology — Posted on 2019-05-27

624 Selective Affimers Recognize BCL-2 Family Proteins Through Non-Canonical Structural Motifs

Edwards, T. A.; Miles, J. A.; Hobor, F.; Taylor, J. L.; Tiede, C.; Rowell, P. L.; Trinh, C. H.; Jackson, B. R.; Nadat, F. A.; Kyle, H. F.; Wicky, B. I.; Clarke, J.; Tomlinson, D. C.; Wilson, A. J.

10.1101/651364 — biochemistry — Posted on 2019-05-27

625 A single light-responsive sizer can control multiple-fission cycles in Chlamydomonas

Heldt, F. S.; Tyson, J. J.; Cross, F. R.; Novak, B.

10.1101/648436 — cell biology — Posted on 2019-05-27

626 Phosphatidylinositol Cycle Disruption is Central to Atypical Hemolytic-Uremic Syndrome Caused by Diacylglycerol Kinase Epsilon Deficiency

So, V.; Wu, J.; Traynor-Kaplan, A.; Choy, C.; Epand, R.; Botelho, R.; Lemaire, M.

10.1101/633867 — biochemistry — Posted on 2019-05-27

627 Factors Driving Unique Urination Phenotypes of Male and Female 9-week-old C57BL/6J Mice

RUETTEN, H. M.; Wegner, K. A.; Zhang, H. L.; Wang, P.; Sandhu, J. K.; Sandhu, S. K.; Mueller, B. R.; Wang, Z.; Macoska, J.; Peterson, R. E.; Bjorling, D. E.; Ricke, W. A.; Marker, P. C.; Vezina, C. M.

10.1101/641167 — physiology — Posted on 2019-05-27

628 An adult brain atlas reveals broad neuroanatomical changes in independently evolved populations of Mexican cavefish

Loomis, C.; Peuss, R.; Jaggard, J. B.; Wang, Y.; McKinney, S.; Raftopoulos, A.; Raftopoulos, S.; Whu, D.; Green, M.; McGaugh, S. E.; Rohner, N. E.; Keene, A. C.; Duboue, E. R.

10.1101/648188 — neuroscience — Posted on 2019-05-27

629 Unfolded protein-independent IRE1 activation contributes to multifaceted developmental processes in Arabidopsis

Mishiba, K.-i.; Iwata, Y.; Mochizuki, T.; Matsumura, A.; Nishioka, N.; Hirata, R.; Koizumi, N.

10.1101/651182 — plant biology — Posted on 2019-05-27

630 NEUROD2 represses Reelin expression and controls dendrite orientation during cortical radial migration

Guzelsoy, G.; Akkaya, C.; Atak, D.; Dunn, C. D.; Kabakcioglu, A.; Ozlu, N.; Ince-Dunn, G.

10.1101/651273 — neuroscience — Posted on 2019-05-27

631 Graphene-enabled, spatially controlled electroporation of adherent cells for live-cell super-resolution microscopy

Moon, S.; Li, W.; Xu, K.

10.1101/642868 — bioengineering — Posted on 2019-05-27

632 Persistent Features of Intermittent Transcription

Wilkinson, M.; Darmanis, S.; Pisco, A. O.; Huber, G.

10.1101/650895 — genomics — Posted on 2019-05-27

633 MISSED OPPORTUNITIES OF CHLAMYDIA AND GONORRHEA DETECTION WHEN NOT USING EXTRA GENITAL SCREENING AMONG MALES

Schafer, C. A.; Prado, B.; Barin, N.; Gama, L.

10.1101/428706 — epidemiology — Posted on 2019-05-27

634 Systematic exploration of protein conformational space using a Distance Geometry approach

Malliavin, T. E.; Mucherino, A.; Lavor, C.; Liberti, L.

10.1101/650903 — bioinformatics — Posted on 2019-05-27

635 SolXplain: An Explainable Sequence-Based Protein Solubility Predictor

Mall, R.

10.1101/651067 — bioinformatics — Posted on 2019-05-27

636 Obesogenic diet and targeted deletion of potassium channel Kv1.3 have differing effects on voluntary exercise in mice.

Chelette, B.; Thomas, A.; Fadool, D.

10.1101/650978 — neuroscience — Posted on 2019-05-27

637 Global mistranslation facilitates sampling of beneficial mutations under stress

Samhita, L.; Raval, P. K.; Agashe, D.

10.1101/650846 — evolutionary biology — Posted on 2019-05-27

638 The advantages and disadvantages of short- and long-read metagenomics to infer bacterial and eukaryotic community composition

Pearman, W.; Freed, N. E.; Silander, O. K.

10.1101/650788 — bioinformatics — Posted on 2019-05-27

639 Evolution of vascular plants through redeployment of ancient developmental regulators

van 't Wout Hofland, N.; Lu, K.-J.; Mor, E.; Mutte, S.; Abrahams, P.; Kato, H.; Vandepoele, K.; Weijers, D.; De Rybel, B.

10.1101/650358 — plant biology — Posted on 2019-05-27

640 A high-throughput fluidic chip for rapid phenotypic antibiotic susceptibility testing

Wistrand-Yuen, P.; Malmberg, C.; Fatsis-Kavalopoulos, N.; Lubke, M.; Tangden, T.; Kreuger, J.

10.1101/647909 — microbiology — Posted on 2019-05-27

641 Population history and genetic adaptation of the Fulani nomads: Inferences from genome-wide data and the lactase persistence trait

Vicente, M.; Priehodova, E.; Diallo, I.; Podgorna, E.; Poloni, E. S.; Cerny, V.; Schlebusch, C. M.

10.1101/650986 — evolutionary biology — Posted on 2019-05-27

642 Spatial control of viscoelasticity in phototunable hyaluronic acid hydrogels

Hui, E.; Gimeno, K. I.; Guan, G.; Caliari, S. R.

10.1101/646778 — bioengineering — Posted on 2019-05-27

643 The olfactory basis of orchid pollination by mosquitoes

Lahondere, C.; Vinauger, C.; Okubo, R.; Wolff, G.; Akbari, O.; Riffell, J.

10.1101/643510 — neuroscience — Posted on 2019-05-27

644 Transposable element dynamics are consistent across the Drosophila phylogeny, despite drastically differing content

Hill, T.

10.1101/651059 — genomics — Posted on 2019-05-27

645 Evoregions: Mapping Shifts in Phylogenetic Turnover Across Biogeographic Regions

Maestri, R.; Duarte, L.

10.1101/650713 — ecology — Posted on 2019-05-27

646 TEMPO: Detecting Pathway-Specific Temporal Dysregulation of Gene Expression in Disease

Pietras, C. M.; Ocitti, F.; Slonim, D. K.

10.1101/651018 — bioinformatics — Posted on 2019-05-27

647 Salmonella stress response mediates growth repression in succinate media

Hersch, S. J.; Radan, B.; Ilyas, B.; Navarre, W. W.

10.1101/648782 — microbiology — Posted on 2019-05-27

648 Immunoinformatics Prediction of Epitope Based Peptide Vaccine Against Listeria Monocytogenes Fructose Bisphosphate Aldolase Protein

Elhag, M.; Abubaker, M.; Ahmad, N. M.; Haroun, E. M.; Alaagib, R. M.; Abd Albagi, S. O.; Hassan, M. A.

10.1101/649111 — bioinformatics — Posted on 2019-05-27

649 Plant A20/AN1 proteins coordinate different immune responses including RNAi pathway for antiviral immunity

Chang, L.; Chang, H.-H.; Chiu, Y.-S.; Chang, J.-C.; Hsu, D.-W.; Tzean, Y.; Cheng, A.-P.; Lu, H.-C.; Yeh, H.-H.

10.1101/622696 — plant biology — Posted on 2019-05-27

650 Epigenetic loss of heterozygosity of Apc and an inflammation-associated mutational signature detected in Lrig1+/--driven murine colonic adenomas

Preston, J. L.

10.1101/650879 — cancer biology — Posted on 2019-05-27

651 Aurora A promotes chromosome congression by activating the condensin-dependent pool of KIF4A

Poser, E.; Caous, R.; Gruneberg, U.; Barr, F. A.

10.1101/650937 — cell biology — Posted on 2019-05-27

652 IQGAP2 acts as a tumor suppressor in breast cancer and its reduced expression promotes cancer growth and metastasis by MEK/ERK signalling pathways

Kumar, D.; Hassan, M. K.; Pattanaik, N.; Mohapatra, N.; Dixit, M.

10.1101/651034 — cancer biology — Posted on 2019-05-27

653 Systematic review and meta-analysis of 50 years of coral disease research visualized through the scope of network theory

Montilla, L. M.; Ascanio, A.; Verde, A.; Croquer, A.

10.1101/487447 — ecology — Posted on 2019-05-26

654 From cells to tissue: How cell scale heterogeneity impacts glioblastoma growth and treatment response

Gallaher, J. A.; Massey, S. C.; Hawkins-Daarud, A. C.; Noticewala, S. S.; Rockne, R. C.; Johnston, S. K.; Gonzalez-Cuyar, L.; Juliano, J.; Gil, O.; Swanson, K. R.; Canoll, P.; Anderson, A. R. A.

10.1101/650150 — cancer biology — Posted on 2019-05-26

655 Bactericidal Type IV Secretion System Homeostasis in Xanthomonas citri

Cenens, W.; Andrade, M. O.; Farah, C. S.

10.1101/647685 — microbiology — Posted on 2019-05-26

656 Exploring multiple sensory systems in ovipositors of Drosophila suzukii and related species with different egg-laying behaviour

Crava, C. M.; Romani, R.; Zanini, D.; Amati, S.; Sollai, G.; Crnjar, R.; Paoli, M.; Rossi-Stacconi, M. V.; Rota-Stabelli, O.; Tait, G.; Haase, A.; Anfora, G.

10.1101/651091 — zoology — Posted on 2019-05-26

657 nf-core: Community curated bioinformatics pipelines

Ewels, P.; Peltzer, A.; Fillinger, S.; Alneberg, J.; Patel, H.; Wilm, A.; Garcia, M.; Di Tommaso, P.; Nahnsen, S.

10.1101/610741 — bioinformatics — Posted on 2019-05-26

658 Promoters adopt distinct dynamic manifestations depending on transcription factor context

Hansen, A. S.; Zechner, C.

10.1101/650762 — systems biology — Posted on 2019-05-26

659 dbMTS: a comprehensive database of putative human microRNA target site SNVs and their functional predictions

Li, C.; Swartz, M. D.; Yu, B.; Bai, Y.; Liu, X.

10.1101/554485 — bioinformatics — Posted on 2019-05-26

660 Minimal requirements for membrane adaptation of the bacterial model organism M. extorquens

Chwastek, G.; Surma, M. A.; Rizk, S.; Grosser, D.; Lavrynenko, O.; Shevchenko, A. P.; Rucinska, M.; Jambor, H.; Saenz, J. P.

10.1101/650390 — biochemistry — Posted on 2019-05-26

661 Enterococcus faecalis CRISPR-Cas is a robust barrier to conjugative antibiotic resistance dissemination in the murine intestine

Price, V. J.; McBride, S. W.; Hullahalli, K.; Chatterjee, A.; Duerkop, B.; Palmer, K. L.

10.1101/312751 — microbiology — Posted on 2019-05-26

662 Environmental heterogeneity drives tsetse fly population dynamics and control

Cecilia, H.; Arnoux, S.; Picault, S.; Dicko, A.; Seck, M. T.; Sall, B.; Bassene, M.; Vreysen, M.; Pagabeleguem, S.; Bance, A.; Bouyer, J.; Ezanno, P.

10.1101/493650 — ecology — Posted on 2019-05-26

663 Prediction of specific TCR-peptide binding from large dictionaries of TCR-peptide pairs

Springer, I.; Besser, H.; Tickotsky-Moskovitz, N.; Dvorkin, S.; Louzoun, Y.

10.1101/650861 — immunology — Posted on 2019-05-26

664 Mammary mechanobiology: PIEZO1 mechanically-activated ion channels in lactation and involution

Stewart, T. A.; Hughes, K.; Stevenson, A. J.; Marino, N.; Ju, A. L.; Morehead, M.; Davis, F. M.

10.1101/649038 — cell biology — Posted on 2019-05-26

665 A comparative assessment of aging-related NADPH diaphorase positivity in the spinal cord and medullary oblongata between pigeon and murine

Jia, Y.; Hou, W.; Li, Y.; Wen, X.; Rao, C.; Wei, Z.; Zhang, T.; Wang, X.; Li, X.; Bai, L.; Wang, P.; Zhang, W.; Bi, J.; Guo, A.; Wang, J.; Tan, H.

10.1101/650457 — neuroscience — Posted on 2019-05-26

666 An Algorithmic Barrier to Neural Circuit Understanding

Ramaswamy, V.

10.1101/639724 — neuroscience — Posted on 2019-05-26

667 Weaker neural suppression in autism

Schallmo, M.-P.; Kolodny, T.; Kale, A. M.; Millin, R.; Flevaris, A. V.; Edden, R. A. E.; Gerdts, J.; Bernier, R. A.; Murray, S. O.

10.1101/645846 — neuroscience — Posted on 2019-05-26

668 Aberrant striatal oscillations after dopamine loss in parkinsonian non-human primates

Singh, A.; Papa, S. M.

10.1101/650770 — neuroscience — Posted on 2019-05-26

669 Novel method to determine diagnosis-defining refraction points

Yamauchi, T.; Ohshima, M.; Yamaguchi, Y.; Konishi, K.; Kappert, K.; Nakano, S.

10.1101/649442 — epidemiology — Posted on 2019-05-26

670 Bactericidal Type IV Secretion System Homeostasis in Xanthomonas citri

Cenens, W.; Andrade, M. O.; Farah, C. S.

10.1101/647685 — microbiology — Posted on 2019-05-26

671 Pyrenophora teres and Rhynchosporium secalis infections in malt barley as influenced by genotype, spatial and temporal effects and nitrogen fertilization

Vahamidis, P.; Stefopoulou, A.; Lagogianni, C. S.; Economou, G.; Dercas, N.; Kotoulas, V.; Kalivas, D.; Tsitsigiannis, D. I.

10.1101/649475 — plant biology — Posted on 2019-05-26

672 Cooperativity between the 3’ untranslated region microRNA binding sites is critical for the virulence of eastern equine encephalitis virus

Trobaugh, D. W.; Sun, C.; Bhalla, N.; Gardner, C. L.; Dunn, M. D.; Klimstra, W.

10.1101/649525 — microbiology — Posted on 2019-05-26

673 Adipocyte vesicles: ‘all-in-one’ packages that stimulate tumor mitochondrial metabolism and dynamics

Clement, E.; Lazar, I.; Attane, C.; Carrie, L.; Dauvillier, S.; Ducoux-Petit, M.; Menneteau, T.; Moutahir, M.; Le Gonidec, S.; Dalle, S.; Valet, P.; Schiltz, O.; Muller, C.; Nieto, L.

10.1101/649327 — cancer biology — Posted on 2019-05-26

674 Next-generation in situ conservation and capacity building in Madagascar using a mobile genetics lab

Blanco, M.; Greene, L. K.; Williams, R. C.; Yoder, A. D.; Larsen, P. A.

10.1101/650614 — genetics — Posted on 2019-05-26

675 Inhibition of fatty acid oxidation as a new target to treat Primary Amoebic Meningoencephalitis by repurposing two well-known drugs

Sarink, M. J.; Verbon, A.; Tielens, A. G. M.; van Hellemond, J. J.

10.1101/650325 — microbiology — Posted on 2019-05-26

676 Peptide Arrays of Three Collections of Human Sera from Patients Infected with Mosquito-Borne Viruses

Martinez Viedma, M. d. P.; Kose, N.; Parham, L.; Balmaseda, A.; Kuan, G. E.; Lorenzana, I.; Harris, E.; Crowe, J. E.; Pickett, B. E.

10.1101/650796 — microbiology — Posted on 2019-05-26

677 A novel intensity-specific screen identifies RpS21 as a modifier of low-intensity MAPK signaling

Sawyer, J. K.; Kabiri, Z.; Montague, R. A.; Paramore, S. V.; Cohen, E.; Zaribafzadeh, H.; Counter, C. M.; Fox, D. T.

10.1101/650630 — genetics — Posted on 2019-05-26

678 Structural and Functional Responses of Soil Microbial Communities to Biodegradable Plastic Film Mulching in Two Agroecosystems

Bandopadhyay, S.; Sintim, H. Y.; DeBruyn, J. M.

10.1101/650317 — microbiology — Posted on 2019-05-26

679 Trochodendron aralioides, the first chromosome-level draft genome in Trochodendrales and a valuable resource for basal eudicot research

Strijk, J. S.; Hinsinger, D. D.; Zhang, F.-P.; Cao, K.

10.1101/650424 — genomics — Posted on 2019-05-26

680 Promoters adopt distinct dynamic manifestations depending on transcription factor context

Hansen, A. S.; Zechner, C. S.

10.1101/650762 — systems biology — Posted on 2019-05-26

681 Amoxicillin inactivation by thiol-catalyzed cyclization reduces protein haptenation and antibacterial potency

Pajares, M. A.; Zimmerman, T.; Sanchez-Gomez, F. J.; Ariza, A.; Torres, M. J.; Blanca, M.; Canada, F. J.; Montanez, M. I.; Perez-Sala, D.

10.1101/647966 — pharmacology and toxicology — Posted on 2019-05-26

682 Gated electron transport in rhodopsin and its relevance to GPCR activation

Gehrckens, A. S.; Horsfield, A. P.; Skoulakis, E.; Turin, L.

10.1101/650531 — biophysics — Posted on 2019-05-26

683 Modeling binary and graded cone cell fate patterning in the mouse retina

Eldred, K. C.; Avelis, C. M.; Johnston, R. J.; Roberts, E.

10.1101/650606 — developmental biology — Posted on 2019-05-26

684 From cells to tissue: How cell scale heterogeneity impacts glioblastoma growth and treatment response

Gallaher, J. A.; Massey, S. C.; Hawkins-Daarud, A. C.; Noticewala, S. S.; Rockne, R. C.; Johnston, S. K.; Gonzalez-Cuyar, L.; Juliano, J.; Gil, O.; Swanson, K. R.; Canoll, P.; Anderson, A. R. A.

10.1101/650150 — cancer biology — Posted on 2019-05-26

685 Minimal requirements for membrane adaptation of the bacterial model organism M. extorquens

Chwastek, G.; Surma, M. A.; Rizk, S.; Grosser, D.; Lavrynenko, O.; Shevchenko, A. P.; Rucinska, M.; Jambor, H.; Saenz, J. P.

10.1101/650390 — biochemistry — Posted on 2019-05-26

686 Immunogenicity assessment of PRRS polylactic acid glycolic acid DNA vaccine

Smith, J.; Kowalski, S.

10.1101/650739 — biochemistry — Posted on 2019-05-26

687 Molecular detection and characterization of mutation on 23S rRNA gene associated with clarithromycin resistant in Helicobacter pylori

Abd albagi, S. O.; Altayeb, H. N. a.; Abuzeid, N. K.

10.1101/650432 — molecular biology — Posted on 2019-05-26

688 Species-specific oscillation periods of human and mouse segmentation clocks are due to cell autonomous differences in biochemical reaction parameters

Matsuda, M.; Hayashi, H.; Garcia-Ojalvo, J.; Yoshioka-Kobayashi, K.; Kageyama, R.; Yamanaka, Y.; Ikeya, M.; Toguchida, J.; Alev, C.; Ebisuya, M.

10.1101/650648 — developmental biology — Posted on 2019-05-26

689 Co-Registration of Optoacoustic Tomography and Magnetic Resonance Imaging Data from Murine Tumour Models

Gehrung, M.; Tomaszewski, M.; McIntyre, D.; Disselhorst, J.; Bohndiek, S.

10.1101/636035 — bioengineering — Posted on 2019-05-26

690 Seasonal and spatial controls on N2O concentrations and emissions in low-nitrogen estuaries: Evidence from three tropical systems

Murray, R. H.; Erler, D.; Rosentreter, J. A.; Wells, N.; Eyre, B.

10.1101/650705 — biochemistry — Posted on 2019-05-26

691 Biosynthesis of an Anti-Addiction Agent from the Iboga Plant

O'Connor, S. E.; Farrow, S.; Kamileen, O. M.; Caputi, L.; Bussey, K.; Mundy, J.; McAtee, R.; Stephenson, C.

10.1101/647891 — biochemistry — Posted on 2019-05-26

692 A comparative assessment of aging-related NADPH diaphorase positivity in the spinal cord and medullary oblongata between pigeon and murine

Jia, Y.; Hou, W.; Li, Y.; Wen, X.; Rao, C.; Wei, Z.; Zhang, T.; Wang, X.; Li, X.; Bai, L.; Zhang, W.; Wang, P.; Bi, J.; Guo, A.; Wang, J.; Tan, H.

10.1101/527358 — neuroscience — Posted on 2019-05-25

693 Evidence that Runt Acts as a Counter-Repressor of Groucho during Drosophila melanogaster Primary Sex Determination

Erickson, J. W.; Mahadevaraju, S.

10.1101/648832 — developmental biology — Posted on 2019-05-26

694 Estimating heritability and its enrichment in tissue-specific gene sets in admixed populations

Luo, Y.; Li, X.; Wang, X.; Gazal, S.; Mercader, J. M.; Neale, B.; Florez, J. C.; Auton, A.; Price, A.; Finucane, H. K.; Raychaudhuri, S.

10.1101/503144 — genetics — Posted on 2019-05-25

695 Models of archaic admixture and recent history from two-locus statistics

Ragsdale, A. P.; Gravel, S.

10.1101/489401 — genetics — Posted on 2019-05-25

696 Rewiring of the cellular and inter-cellular landscape of the human colon during ulcerative colitis

Smillie, C. S.; Biton, M.; Ordovas-Montanes, J.; Sullivan, K. M.; Burgin, G.; Graham, D. B.; Herbst, R. H.; Rogel, N.; Slyper, M.; Waldman, J.; Sud, M.; Andrews, E.; Haber, A. L.; Vickovic, S.; Dionne, D.; Nguyen, L. T.; Villani, A. C.; Hofree, M.; Creasey, E. A.; Huang, H.; Rozenblatt-Rosen, O.; Garber, J. J.; Khalili, H.; Desch, A. N.; Daly, M. J.; Ananthakrishnan, A. N.; Shalek, A. K.; Xavier, R. J.; Regev, A.

10.1101/455451 — genomics — Posted on 2019-05-25

697 Relationship between footshock intensity, post-training corticosterone release and contextual fear memory specificity over time

dos Santos Correa, M.; dos Santos Vaz, B.; Grisanti, G. D. V.; de Paiva, J. P. Q.; Tiba, P. A.; Fornari, R. V.

10.1101/643098 — animal behavior and cognition — Posted on 2019-05-25

698 Dynamics of murine brain protein synthesis in vivo identify the hippocampus, cortex and cerebellum as highly active metabolic sites

Ng, S. S.; Park, J. E.; Meng, W.; Chen, C. L.-H.; Kalaria, R. N.; McCarthy, N. E.; Sze, S. K.

10.1101/643783 — neuroscience — Posted on 2019-05-25

699 Expanding The CRISPR Toolbox With Mad7 In Zebrafish And Human Cells

Wierson, W. A.; Simone, B. W.; WareJoncas, Z. C.; Mann, C.; Welker, J. M.; Gendron, W. A. C.; Barry, M. A.; Clark, K. J.; Dobbs, D.; McGrail, M. A.; Ekker, S. C.; Essner, J. C.

10.1101/650515 — genetics — Posted on 2019-05-25

700 Expression of 9-O- and 7,9-O-acetyl modified sialic acids in cells and their effects on influenza viruses

Barnard, K. N.; Wasik, B. R.; LaClair, J. R.; Weichert, W.; Lawrence, B. K.; Parrish, C. R.

10.1101/650341 — cell biology — Posted on 2019-05-25

701 Molecular flux control encodes distinct cytoskeletal responses by specifying SRC signaling pathway usage.

Kerjouan, A.; Boyault, C.; Oddou, C.; Hiriart-Bryant, E.; Grichine, A.; Kraut, A.; Pezet, M.; Balland, M.; Faurobert, E.; Bonnet, I.; Coute, Y.; Fourcade, B.; Albiges-Rizo, C.; Destaing, O.

10.1101/648030 — cell biology — Posted on 2019-05-25

702 Dentate gyrus neurons that are born at the peak of development, but not before or after, die in adulthood

Ciric, T.; Cahill, S. P.; Snyder, J. S.

10.1101/650309 — neuroscience — Posted on 2019-05-25

703 Educational attainment, body mass index, and smoking initiation: Using genetic path analysis to control for pleiotropy in a Mendelian randomization study

Mann, F. D.; Shabalin, A. A.; Docherty, A. D.; Krueger, R. F.

10.1101/650192 — genetics — Posted on 2019-05-25

704 Genomic analysis of the tryptome reveals molecular mechanisms of gland cell evolution

Babonis, L. S.; Ryan, J. F.; Enjolras, C.; Martindale, M. Q.

10.1101/645952 — evolutionary biology — Posted on 2019-05-25

705 Mitochondrial dynamics quantitatively revealed by STED nanoscopy with an enhanced squaraine variant probe

Yang, X.; Yang, Z.; He, Y.; Shan, C.; Yan, W.; Wu, Z.; Chai, P.; Teng, J.; Qu, J.; Xi, P.

10.1101/646117 — biophysics — Posted on 2019-05-25

706 Deep spectral learning for label-free optical imaging oximetry with uncertainty quantification

Liu, R.; Cheng, S.; Tian, L.; Yi, J.

10.1101/650259 — bioengineering — Posted on 2019-05-25

707 The cognitive cost of reducing relapse to cocaine-seeking with mGlu5 allosteric modulators.

Gobin, C.; Schwendt, M.

10.1101/628388 — neuroscience — Posted on 2019-05-25

708 Multidimensional analysis of extended molecular dynamics simulations reveals the complexity of signal transduction by the histamine H3 membrane receptor

Herrera-Zuniga, L. D.; Moreno-Vargas, L. M.; Correa-Basurto, J.; Prada, D.; Curmi, P.; Arrang, J.-M.; Maroun, R. C.

10.1101/604793 — bioinformatics — Posted on 2019-05-25

709 The neural basis of tadpole transport in poison frogs

Fischer, E. K.; Roland, A. B.; Moskowitz, N. A.; Tapia, E. E.; Summers, K.; Coloma, L.; O'Connell, L. A.

10.1101/630681 — animal behavior and cognition — Posted on 2019-05-25

710 GeneWeld: a method for efficient targeted integration directed by short homology

Wierson, W. A.; Welker, J. M.; Almeida, M. P.; Mann, C. M.; Webster, D. A.; Weiss, T. J.; Torrie, M. E.; Vollbrecht, M. K.; Lan, M.; McKeighan, K. C.; Levey, J.; Ming, Z.; Wehmeier, A.; Mikelson, C. S.; Haltom, J. A.; Kwan, K. M.; Chien, C.-B.; Balciunas, D.; Ekker, S. C.; Clark, K. J.; Webber, B. R.; Moriarity, B.; Solin, S. L.; Carlson, D. F.; Dobbs, D. L.; McGrail, M.; Essner, J. J.

10.1101/431627 — genetics — Posted on 2019-05-25

711 Cell Communication Network factor 4 (CCN4/WISP1) shifts melanoma cells from a fragile proliferative state to a resilient metastatic state

Deng, W.; Fernandez, A.; McLaughlin, S. L.; Klinke, D. J.

10.1101/487751 — cancer biology — Posted on 2019-05-25

712 An evolutionary quantitative genetics model for phenotypic (co)variance under limited dispersal, with an application to socially synergistic traits

Mullon, C.; Lehmann, L.

10.1101/393538 — ecology — Posted on 2019-05-25

713 Behaviour, biology, and evolution of vocal learning in bats

Vernes, S.; Wilkinson, G.

10.1101/646703 — animal behavior and cognition — Posted on 2019-05-25

714 Genetic screens identify multiple negative regulators that additively restrict recruitment of the SWI/SNF chromatin remodeler to the HO promoter in Saccharomyces cerevisiae

Parnell, E. J.; Stillman, D. J.

10.1101/606780 — genetics — Posted on 2019-05-25

715 Taxonomy, ecology and distribution of Juniperus oxycedrus L. group in the Mediterranean Region using morphometric, phytochemical and bioclimatic approaches.

Cano-Ortiz, A.; Musarella, C. M.; Pinar Fuentes, J. C.; Pinto Gomes, C. J.; Spampinato, G.; Cano, E.

10.1101/459651 — plant biology — Posted on 2019-05-25

716 Novel cyclic peptides in seeds of Annona muricata are ribosomally synthesised

Fisher, M. F.; Zhang, J.; Berkowitz, O.; Whelan, J.; Mylne, J. S.

10.1101/647552 — biochemistry — Posted on 2019-05-25

717 Chromosome organization by a conserved condensin-ParB system in the actinobacterium Corynebacterium glutamicum

Boehm, K.; Giacomelli, G.; Schmidt, A.; Imhof, A.; Koszul, R.; Marbouty, M.; Bramkamp, M.

10.1101/649749 — microbiology — Posted on 2019-05-25

718 Allele-Specific QTL Fine-Mapping with PLASMA

Wang, A. T.; Shetty, A. H.; O'Connor, E.; Bell, C.; Pomerantz, M. M.; Freedman, M. L.; Gusev, A. L.

10.1101/650242 — bioinformatics — Posted on 2019-05-25

719 Localized semi-nonnegative matrix factorization (LocaNMF) of widefield calcium imaging data

Saxena, S.; Kinsella, I.; Musall, S.; Kim, S. H.; Meszaros, J.; Thibodeaux, D. N.; Kim, C.; Cunningham, J.; Hillman, E.; Churchland, A.; Paninski, L.

10.1101/650093 — neuroscience — Posted on 2019-05-25

720 Fast signaling and focal connectivity of PV+ interneurons ensure efficient patternseparation by lateral inhibition in a full-scale dentate gyrus network model

Guzman, S. J.; Schlögl, A.; Espinoza, C.; Zhang, X.; Suter, B.; Jonas, P.

10.1101/647800 — neuroscience — Posted on 2019-05-25

721 Educational attainment, body mass index, and smoking initiation: Using genetic path analysis to control for pleiotropy in a Mendelian randomization study

Mann, F. D.; Shabalin, A. A.; Docherty, A. D.; Krueger, R. F.

10.1101/650192 — genetics — Posted on 2019-05-25

722 SELVa: Simulator of Evolution with Landscape Variation

Nabieva, E.; Bazykin, G. A.

10.1101/647834 — evolutionary biology — Posted on 2019-05-25

723 Differential Effects of Afferent and Efferent Vagus Nerve Stimulation on Gastric Motility Assessed with Magnetic Resonance Imaging

Lu, K.-H.; Cao, J.; Phillips, R.; Powley, T.; Liu, Z.

10.1101/650234 — bioengineering — Posted on 2019-05-25

724 Deep spectral learning for label-free optical imaging oximetry with uncertainty quantification

Liu, R.; Cheng, S.; Tian, L.; Yi, J.

10.1101/650259 — bioengineering — Posted on 2019-05-25

725 Neuronal hyperexcitability drives TDP43 pathology by upregulating shortened TDP43 protein isoforms

Weskamp, K.; Tank, E. M.; Miguez, R.; Gomez, N. B.; White, M.; Lin, Z.; Moreno Gonzalez, C.; Serio, A.; Sreedharan, J.; Barmada, S. J.

10.1101/648477 — neuroscience — Posted on 2019-05-24

726 Primary cilia dysfunction as a novel pathogenic mechanism of prenatal alcohol-induced birth defects

Boschen, K. E.; Fish, E. W.; Parnell, S. E.

10.1101/649673 — developmental biology — Posted on 2019-05-24

727 Frontal eye field inactivation alters the readout of superior colliculus activity for saccade generation in a task-dependent manner

Peel, T. R.; Dash, S.; Lomber, S. G.; Corneil, B. D.

10.1101/646604 — neuroscience — Posted on 2019-05-24

728 Effector-dependent modulation of working memory maintenance in posterior parietal cortex

Pilacinski, A.; Lindner, A.

10.1101/650077 — neuroscience — Posted on 2019-05-24

729 Left parietal tACS at alpha frequency induces a shift of visuospatial attention

Schuhmann, T.; Kemmerer, S. K.; Duecker, F.; de Graaf, T. A.; ten Oever, S.; De Weerd, P.; Sack, A. T.

10.1101/644237 — neuroscience — Posted on 2019-05-24

730 Transcriptome-wide association study of attention deficit hyperactivity disorder identifies associated genes and phenotypes

Liao, C.; Dionne-Laporte, A.; Spiegelman, D.; Akcimen, F.; Joober, R.; DIon, P. A.; Rouleau, G.

10.1101/642231 — genetics — Posted on 2019-05-24

731 Towards creating an extended metabolic model (EMM) for E. coli using enzyme promiscuity prediction and metabolomics data

Amin, S. A.; Chavez, E.; Porokhin, V.; Nair, N. U.; Hassoun, S.

10.1101/536060 — systems biology — Posted on 2019-05-24

732 Discovery of interaction-related sRNAs and their targets in the Brachypodium distachyon and Magnaporthe oryzae pathosystem

Zanini, S.; Secic, E.; Busche, T.; Kalinowski, J.; Kogel, K.-H.

10.1101/631945 — plant biology — Posted on 2019-05-24

733 End-to-end assessment of fecal bacteriome analysis: from sample processing to DNA sequencing and bioinformatics results

Christoff, A. P.; Cruz, G. N. F.; Sereia, A. F. R.; Yamanaka, L. E.; Silveira, P. P.; Oliveira, L. F. V.

10.1101/646349 — microbiology — Posted on 2019-05-24

734 Population genetic simulation study of power in association testing across genetic architectures and study designs

Tong, D. M. H.; Hernandez, R. D.

10.1101/632786 — genomics — Posted on 2019-05-24

735 The genetic interaction between HIV and the antibody repertoire

Strauli, N.; Fryer, E. K.; Pham, O.; Abdel-Mohsen, M.; Facente, S. N.; Pilcher, C.; Pennings, P.; Pillai, S.; Hernandez, R. D.

10.1101/646968 — evolutionary biology — Posted on 2019-05-24

736 Agency plans are inadequate to conserve US endangered species under climate change

Delach, A.; Caldas, A.; Edson, K.; Krehbiel, R.; Murray, S.; Theoharides, K.; Vorhees, L.; Malcom, J. W.; Salvo, M.; Miller, J. R. B.

10.1101/647396 — ecology — Posted on 2019-05-24

737 A “Human-in-the-Loop” Approach for Semi-automated Image Restoration in Electron Microscopy

Roels, J.; Vernaillen, F.; Kremer, A.; Goncalves, A.; Aelterman, J.; Luong, H. Q.; Goossens, B.; Philips, W.; Lippens, S.; Saeys, Y.

10.1101/644146 — bioinformatics — Posted on 2019-05-24

738 Toward Broad Spectrum DHFR inhibitors Targeting Trimethoprim Resistant Enzymes Identified in Clinical Isolates of Methicillin-Resistant Staphylococcus aureus

Reeve, S. M.; Si, D.; Krucinska, J.; Yan, Y.; Viswanathan, K.; Wang, S.; Holt, G. T.; Frenkel, M. S.; Ojewole, A. A.; Estrada, A.; Agabiti, S. S.; Alverson, J. B.; Gibson, N. D.; Weimer, A. J.; Donald, B. R.; Wright, D. L.

10.1101/648808 — biochemistry — Posted on 2019-05-24

739 Disease Resistance Genetics and Genomics in Octoploid Strawberry

Barbey, C.; Lee, S.; Verma, S.; Bird, K. A.; Yocca, A. E.; Edger, P. P.; Knapp, S. J.; Whitaker, V. M.; Folta, K. M.

10.1101/646000 — genomics — Posted on 2019-05-24

740 Multi-resolution localization of causal variants across the genome

Sesia, M.; Katsevich, E.; Bates, S.; Candes, E.; Sabatti, C.

10.1101/631390 — genomics — Posted on 2019-05-24

741 Long non-coding RNA GRASLND enhances chondrogenesis via suppression of interferon type II signaling pathway

Huynh, N. P.; Gloss, C. C.; Lorentz, J.; Tang, R.; McAlinden, A.; Zhang, B.; Brunger, J.; Guilak, F.

10.1101/650010 — cell biology — Posted on 2019-05-24

742 SurfaceGenie: A web-based application for prioritizing cell-type specific marker candidates

Waas, M.; Terai Snarrenberg, S.; Littrell, J.; Jones Lipinski, R.; Hansen, P.; Corbett, J.; Gundry, R.

10.1101/575969 — systems biology — Posted on 2019-05-24

743 Characterizing grapevine (Vitis spp.) inflorescence architecture using X-ray imaging: implications for understanding cluster density

Li, M.; Klein, L. L.; Duncan, K. E.; Jiang, N.; Chitwood, D. H.; Londo, J. P.; Miller, A.; Topp, C.

10.1101/557819 — plant biology — Posted on 2019-05-24

744 nf-core: Community curated bioinformatics pipelines

Ewels, P.; Peltzer, A.; Fillinger, S.; Alneberg, J.; Patel, H.; Wilm, A.; Garcia, M.; Di Tommaso, P.; Nahnsen, S.

10.1101/610741 — bioinformatics — Posted on 2019-05-24

745 Automated high-throughput proteome and phosphoproteome analysis using paramagnetic bead technology

Leutert, M.; Rodriguez-Mias, R. A.; Fukuda, N.; Villen, J.

10.1101/647784 — systems biology — Posted on 2019-05-24

746 Lanthanide transport, storage, and beyond: genes and processes contributing to XoxF function in Methylorubrum extorquens AM1

Roszczenko-Jasinska, P.; Vu, H. N.; Subuyuj, G. A.; Crisostomo, R. V.; Cai, J.; Raghuraman, C.; Ayala, E. M.; Clippard, E. J.; Lien, N. F.; Ngo, R. T.; Yarza, F.; Hoeber, C. A.; Martinez-Gomez, N. C.; Skovran, E.

10.1101/647677 — microbiology — Posted on 2019-05-24

747 Using genetics to examine a general liability to childhood psychopathology

Riglin, L.; Thapar, A. K.; Leppert, B.; Martin, J.; Richards, A.; Anney, R.; Davey Smith, G.; Tilling, K.; Stergiakouli, E.; Lahey, B. B.; O'Donovan, M. C.; Collishaw, S.; Thapar, A.

10.1101/409540 — genetics — Posted on 2019-05-24

748 Scale-eating specialists evolved adaptive feeding kinematics within a microendemic radiation of San Salvador Island pupfishes

St. John, M. E.; Martin, C. H.

10.1101/648451 — animal behavior and cognition — Posted on 2019-05-24

749 Mechanisms involved in follistatin-induced hypertrophy and increased insulin action in skeletal muscle

Han, X.; Moller, L. L. V.; De Groote, E.; Bojsen-Moller, K. K. N.; Davey, J.; Henriquez-Olguin, C.; Li, Z.; Knudsen, J. R.; Jensen, T. E.; Madsbad, S.; Gregorevic, P.; Richter, E. A.; Sylow, L.

10.1101/568097 — physiology — Posted on 2019-05-24

750 Selective modulation of the glucocorticoid receptor with CORT108297 during chronic adolescent stress evokes sex specific effects in adulthood.

Cotella, E. M.; Morano, R. L.; Wulsin, A. C.; Martelle, S. E.; Lemen, P.; Fitzgerald, M.; Packard, B. A.; Moloney, R. D.; Herman, J. P.

10.1101/646745 — neuroscience — Posted on 2019-05-24

751 Microbial composition of the human nasopharynx varies according to influenza virus type and vaccination status.

Ding, T.; Song, T.; Zhou, B.; Geber, A.; Ma, Y.; Zhang, L.; Volk, M.; Kapadia, S. N.; Jenkins, S. G.; Salvatore, M.; Ghedin, E.

10.1101/647693 — microbiology — Posted on 2019-05-24

752 Balancing selection via life-history trade-offs maintains an inversion polymorphism in a seaweed fly

Merot, C.; LLaurens, V.; Normandeau, E.; Bernatchez, L.; Wellenreuther, M.

10.1101/648584 — evolutionary biology — Posted on 2019-05-24

753 Community size affects the signals of ecological drift and niche selection on biodiversity

Siqueira, T.; Saito, V. S.; Bini, L. M.; Melo, A. S.; Petsch, D. K.; Landeiro, V. L.; Tolonen, K. T.; Jyrkankallio-Mikkola, J.; Soininen, J.; Heino, J.

10.1101/515098 — ecology — Posted on 2019-05-24

754 Information Theoretic Feature Selection Methods for Single Cell RNA-Sequencing

Varma, U.; Colacino, J.; Gilbert, A. C.

10.1101/646919 — bioinformatics — Posted on 2019-05-24

755 Nod-like receptors are critical for gut-brain axis signaling

Pusceddu, M.; Barboza, M.; Schneider, M.; Stokes, P.; Sladek, J.; Torres Fuentes, C.; Goldfild, L.; Gillis, S.; Brust-Mascher, I.; Rabasa, G.; Wong, K.; Lebrilla, C.; Byndloss, M.; Maisonneuve, C.; Baumler, A. J.; Philpott, D. J.; Ferrero, R.; Barrett, K. E.; Reardon, C.; Gareau, M.

10.1101/647032 — physiology — Posted on 2019-05-24

756 Auditory binaural and spatial hearing impairments in a Fragile X Syndrome mouse model

McCullagh, E. A.; Poleg, S.; Greene, N. T.; Huntsman, M. M.; Tollin, D. J.; Klug, A.

10.1101/648717 — neuroscience — Posted on 2019-05-24

757 cfrB,cfrC, and a potential new cfr-like gene in Clostridium difficile strains recovered across Latin America

Stojkovic, V.; Ulate, M. F.; Hidalgo-Villeda, F.; Aguilar, E.; Monge-Cascante, C.; Pizarro-Guajardo, M.; Tsai, K.; Tzoc, E.; Camorlinga-Ponce, M.; Paredes-Sabja, D.; Quesada-Gomez, C.; Fujimori, D.; Rodriguez, C.

10.1101/649020 — microbiology — Posted on 2019-05-24

758 Consistent metagenome-derived metrics verify and define bacterial species boundaries

Olm, M. R.; Crits-Christoph, A.; Diamond, S.; Lavy, A.; Matheus Carnevali, P. B.; Banfield, J. F.

10.1101/647511 — microbiology — Posted on 2019-05-24

759 The genetic makeup of the electrocardiogram

Verweij, N.; Benjamins, J.-W.; Morley, M. P.; van de Vegte, Y. J.; Teumer, A.; Trenkwalder, T.; Reinhard, W.; Cappola, T.; van der Harst, P.

10.1101/648527 — genetics — Posted on 2019-05-24

760 Species-specific InDel markers for authentication of the Korean herbs Zanthoxylum schinifolium and Zanthoxylum piperitum

Kim, Y.; Shin, J.; Cho, S.-S.; Hwang, Y.-P.; Choi, C.

10.1101/646240 — bioinformatics — Posted on 2019-05-24

761 Molecular Cloning and Functional Analysis of the UV-B Photoreceptor Gene ZmUVR8 (UVR8 Response locus), from Zea Mays.

Fernandez, M. B.; Lamattina, L.; Cassia, R.

10.1101/649905 — plant biology — Posted on 2019-05-24

762 Ambient temperature effects on stress-induced hyperthermia in Svalbard ptarmigan

Nord, A.; Folkow, L. P.

10.1101/594614 — physiology — Posted on 2019-05-24

763 The role of the ventral MGB in speech in noise comprehension

Mihai, P. G.; Tschentscher, N.; von Kriegstein, K.

10.1101/646570 — neuroscience — Posted on 2019-05-24

764 A cytoskeletal network maintains filament shape in the multicellular cyanobacterium Anabaena sp. PCC 7120

Springstein, B. L.; Nürnberg, D. J.; Kieninger, A.-K.; Woehle, C.; Weissenbach, J.; Theune, M.; Helbig, A. O.; Tholey, A.; Maldener, I.; Dagan, T.; Stucken, K.

10.1101/553073 — microbiology — Posted on 2019-05-24

765 Subcellular compartments interplay for carbon and nitrogen allocation in Chromera velia and Vitrella brassicaformis

Fussy, Z.; Faitova, T.; Obornik, M.

10.1101/603555 — genomics — Posted on 2019-05-24

766 Age-dependent sexual dimorphism in the adult human gut microbiota

Zhang, X.; Zhong, H.; Li, Y.; Shi, Z.; Zhang, Z.; Zhou, X.; Ren, H.; Tang, S.; Han, X.; Lin, Y.; Wang, D.; Yang, F.; Fang, C.; Fu, Z.; Wang, L.; Zhu, S.; Hou, Y.; Xu, X.; Yang, H.; Wang, J.; Kristiansen, K.; Li, J.; Ji, L.

10.1101/646620 — genomics — Posted on 2019-05-24

767 Microclimatic effects on alpine plant and flower visitor communities and their interactions

Ohler, L.-M.; Lechleitner, M.; Junker, R. R.

10.1101/646752 — ecology — Posted on 2019-05-24

768 Breaking down defenses: Quantitative analysis of malaria infection dynamics reveals distinct immune defense strategies

Wale, N.; Jones, M. J.; Sim, D. G.; Read, A. F.; King, A. A.

10.1101/648428 — ecology — Posted on 2019-05-24

769 Controlling Organization and Forces in Active Matter Through Optically-Defined Boundaries

Ross, T. D.; Lee, H. J.; Qu, Z.; Banks, R. A.; Phillips, R.; Thomson, M.

10.1101/504456 — biophysics — Posted on 2019-05-24

770 Molecular mechanism of TRPV2 channel modulation by cannabidiol

Pumroy, R. A.; Samanta, A.; Liu, Y.; Hughes, T. E. T.; Zhao, S.; Yudin, Y.; Huynh, K. W.; Zhou, Z. H.; Rohacs, T.; Han, S.; Moiseenkova-Bell, V. Y.

10.1101/521880 — biophysics — Posted on 2019-05-24

771 Biochemical Reduction of the Topology of the Diverse WDR76 Protein Interactome

Dayebgadoh, G.; Sardiu, M.; Florens, L.; Washburn, M.

10.1101/650028 — systems biology — Posted on 2019-05-24

772 StereoMate: A Stereological and Automated Analysis Platform for Assessing Histological Labelling in Cleared Tissue Specimens

West, S. J.; Bennett, D. L.

10.1101/648337 — neuroscience — Posted on 2019-05-24

773 Phasic Dopamine Release Magnitude Tracks Individual Differences in Sensitization of Locomotor Response following a History of Nicotine Exposure

Fennell, A. M.; Pitts, E. G.; Sexton, L. L.; Ferris, M. J.

10.1101/646844 — neuroscience — Posted on 2019-05-24

774 Dissociating proprioceptive deficits in Autism Spectrum Disorders: Intact acuity but impaired sensory integration in postural control.

Doumas, M.; Knox, R.; O'Brien, C.; Craig, C. E.

10.1101/644617 — neuroscience — Posted on 2019-05-24

775 A network supporting social influences in human decision-making

Zhang, L.; Glascher, J. P.

10.1101/551614 — neuroscience — Posted on 2019-05-24

776 Visual body form and orientation cues do not modulate visuo-tactile temporal integration

Smit, S.; Rich, A. N.; Zopf, R.

10.1101/647594 — neuroscience — Posted on 2019-05-24

777 The effect of network thresholding and weighting on structural brain networks in the UK Biobank

Buchanan, C. R.; Bastin, M. E.; Ritchie, S. J.; Liewald, D. C.; Madole, J.; Tucker-Drob, E. M.; Deary, I. J.; Cox, S. R.

10.1101/649418 — neuroscience — Posted on 2019-05-24

778 Salmonella ItaR responds to itaconate in macrophage

Hersch, S. J.; Navarre, W. W.

10.1101/648865 — microbiology — Posted on 2019-05-24

779 Deconstructing higher-order interactions in the microbiota: A theoretical examination

Yitbarek, S.; Guittar, J. L.; Knutie, S. A.; Ogbunugafor, C. B.

10.1101/647156 — ecology — Posted on 2019-05-24

780 Genesis and Gappa: Library and Toolkit for Working with Phylogenetic (Placement) Data

Czech, L.; Barbera, P.; Stamatakis, A.

10.1101/647958 — bioinformatics — Posted on 2019-05-24

781 epiScanpy: integrated single-cell epigenomic analysis

Danese, A.; Richter, M. L.; Fischer, D. S.; Theis, F. J.; Colome-Tatche, M.

10.1101/648097 — bioinformatics — Posted on 2019-05-24

782 GSAn: an alternative to enrichment analysis for annotating gene sets

Ayllon Beniez, A.; Bourqui, R.; Thebault, P.; Mougin, F.

10.1101/648444 — bioinformatics — Posted on 2019-05-24

783 Design principles of ROS dynamic networks relevant to precision therapies for age-related diseases

10.1101/647776 — systems biology — Posted on 2019-05-24

784 Functional synapse types via characterization of short-term synaptic plasticity

Lee, J. H.; Campagnola, L.; Seeman, S. C.; Jarsky, T. H.; Mihalas, S. H.

10.1101/648725 — neuroscience — Posted on 2019-05-24

785 Temporal learning of bottom-up connections via spatially nonspecific top-down inputs

Lee, J. H.; Kim, M.-H.; Vijayan, S.

10.1101/649798 — neuroscience — Posted on 2019-05-24

786 Large-scale plurimodal networks common to listening, production and reading word-lists: an fMRI study combining tasks-induced activation and intrinsic connectivity in 144 right-handers.

Hesling, I.; Labache, L.; Joliot, M.; Tzourio-Mazoyer, N.

10.1101/382960 — neuroscience — Posted on 2019-05-24

787 Uncovering bi-directional causal relationships between plasma proteins and psychiatric disorders: A proteome-wide study leveraging GWAS summary data

Chau, C. K.-L.; Lau, A. L.-C.; Sham, P. C.; SO, H.-C.

10.1101/648113 — genomics — Posted on 2019-05-24

788 Loss of developmental diapause as a prerequisite for social evolution in bees

Santos, P. F. K.; Arias, M. C.; Kapheim, K. M.

10.1101/649897 — evolutionary biology — Posted on 2019-05-24

789 Quantifying glioblastoma drug penetrance from experimental data

Massey, S. C.; Urcuyo, J.; Marin, B.-M.; Sarkaria, J.; Swanson, K. R.

10.1101/650184 — cancer biology — Posted on 2019-05-24

790 Optimal recovery of missing values for non-negative matrix factorization

Chen, R.; Varshney, L. R.

10.1101/647560 — bioinformatics — Posted on 2019-05-24

791 Direct Measurement of Synchronous Precursor Selection (SPS) Accuracy in Public Proteomics Datasets

Jenkins, C.; Rinas, A.; Orsburn, B.

10.1101/647917 — bioinformatics — Posted on 2019-05-24

792 Functional Analysis of Enzyme Families Using Residue-Residue Coevolution Similarity Networks

Atallah, C.; Skelton, D. J.; Charnock, S. J.; Wipat, A.

10.1101/646539 — bioinformatics — Posted on 2019-05-24

793 Post-transcriptional regulation of Nrf2-mRNA by the mRNA-binding proteins HuR and AUF1

Poganik, J. R.; Long, M. J.; Disare, M. T.; Liu, X.; Chang, S.-H.; Hla, T.; Aye, Y.

10.1101/565937 — biochemistry — Posted on 2019-05-24

794 Exercise does not induce browning of WAT at thermoneutrality and induces an oxidative, myogenic signature in BAT

Aldiss, P.; Lewis, J. E.; Lupini, I.; Boocock, D. J.; Miles, A. K.; Ebling, F. J. P.; Budge, H.; Symonds, M. E.

10.1101/649061 — physiology — Posted on 2019-05-24

795 Early Ictal Recruitment of Midline Thalamus in Mesial Temporal Lobe Epilepsy

Romeo, A.; Roach, A.; Toth, E.; Chaitanya, G.; Ilyas, A.; Riley, K.; Pati, S.

10.1101/647586 — neuroscience — Posted on 2019-05-24

796 Ecological and genomic attributes of novel bacterial taxa that thrive in subsurface soil horizons

Brewer, T. E.; Aronson, E. L.; Arogyaswamy, K.; Billings, S. A.; Botthoff, J. K.; Campbell, A. N.; Dove, N. C.; Fairbanks, D.; Gallery, R. E.; Hart, S.; Kaye, J.; King, G. M.; Logan, G.; Lohse, K. A.; Maltz, M. R.; Mayorga, E.; O'Neill, C.; Owens, S.; Packman, A. I.; Pett-Ridge, J.; Plante, A. F.; Richter, D. D.; Silver, W. L.; Yang, W. H.; Fierer, N.

10.1101/647651 — microbiology — Posted on 2019-05-24

797 Seawater salt-trapped Pseudomonas aeruginosa survives for years and gets primed for salinity tolerance

Elabed, H.; Gonzalez-Tortuero, E.; Ibacache-Quiroga, C.; Bakhrouf, A.; Johnston, P.; Gaddour, K.; Blazquez, J.; Rodriguez-Rojas, A.

10.1101/649152 — microbiology — Posted on 2019-05-24

798 Epigenetic regulation underlying Plasmodium berghei gene expression during its developmental transition from host to vector

Witmer, K.; Fraschka, S.; Vlachou, D.; Bartfai, R.; Christophides, G. K.

10.1101/646430 — genomics — Posted on 2019-05-24

799 Rapidly evolving protointrons in Saccharomyces genomes revealed by a hungry spliceosome

Talkish, J.; Igel, H.; Perriman, R. J.; Shiue, L.; Katzman, S.; Munding, E. M.; Shelansky, R.; Donohue, J. P.; Ares, M.

10.1101/515197 — genomics — Posted on 2019-05-24

800 A cell-free DNA metagenomic sequencing assay that integrates the damage response to infection

Cheng, A. P.; Burnham, P.; Lee, J. R.; Cheng, M. P.; Suthanthiran, M.; Dadhania, D.; De Vlaminck, I.

10.1101/648592 — genomics — Posted on 2019-05-24

801 Mitochondrial behaviors prime the selective inheritance against harmful mitochondrial DNA mutations

Chen, Z.; Wang, Z.-H.; Zhang, G.; Xu, H.

10.1101/646638 — genetics — Posted on 2019-05-24

802 Fast sequence-based microsatellite genotyping development workflow for any non-model species

Lepais, O.; Chancerel, E.; Boury, C.; Salin, F.; Manicki, A.; Taillebois, L.; Dutech, C.; Aissi, A.; Bacles, C. F. E.; Daverat, F.; Launey, S.; Guichoux, E.

10.1101/649772 — genetics — Posted on 2019-05-24

803 Balancing selection shapes the Intracellular Pathogen Response in natural Caenorhabditis elegans populations

van Sluijs, L.; Bosman, K. J.; Pankok, F.; Blokhina, T.; Riksen, J. A. G.; Snoek, B.; Pijlman, G. P.; Kammenga, J. E.; Sterken, M. G.

10.1101/579151 — genetics — Posted on 2019-05-24

804 Parallel and nonparallel genomic responses contribute to herbicide resistance in Ipomoea purpurea, a common agricultural weed

Van Etten, M.; Lee, K. M.; Chang, S.-M.; Baucom, R. S.

10.1101/647164 — evolutionary biology — Posted on 2019-05-24

805 Does variation in glucocorticoid regulation predict fitness? A phylogenetic meta-analysis.

Schoenle, L. A.; Zimmer, C.; Miller, E. T.; Vitousek, M. N.

10.1101/649608 — evolutionary biology — Posted on 2019-05-24

806 Detection of Ovarian Cancer Using Cells Sourced from a Local Microenvironment

Galey, M. M.; Young, A. N.; Petukhova, V. Z.; Wang, M.; Wang, J.; Burdette, J. E.; Sanchez, L. M.

10.1101/597740 — cancer biology — Posted on 2019-05-24

807 Machine learning applied to whole-blood RNA-sequencing data uncovers distinct subsets of patients with systemic lupus erythematosus

Figgett, W. A.; Monaghan, K.; Ng, M.; Alhamdoosh, M.; Maraskovsky, E.; Wilson, N. J.; Hoi, A. Y.; Morand, E. F.; Mackay, F.

10.1101/647719 — bioinformatics — Posted on 2019-05-24

808 2dSS: a web server for protein secondary structure visualization

Diksha, P. L.; Cochard, C.; Vieira, F. R. J.; Silva Bernardes, J.

10.1101/649426 — bioinformatics — Posted on 2019-05-24

809 FGTpartitioner: Parsimonious delimitation of ancestry breakpoints in large genome-wide SNP datasets

Chafin, T. K.

10.1101/644088 — bioinformatics — Posted on 2019-05-24

810 Exploring the druggable space around the Fanconi anemia pathway using machine learning and mechanistic models

Esteban, M.; Pena-Chilet, M.; Loucera, C.; Dopazo, J.

10.1101/647735 — bioinformatics — Posted on 2019-05-24

811 Inducible Plasmid Self-Destruction (IPSD) assisted genome engineering in lactobacilli and bifidobacteria

Zuo, F.; Zeng, Z.; Hammarstrom, L.; Marcotte, H.

10.1101/649921 — bioengineering — Posted on 2019-05-24

812 Discriminating bacterial phenotypes at the population and single-cell level: a comparison of flow cytometry and Raman spectroscopy fingerprinting

Garcia-Timermans, C.; Rubbens, P.; Heyse, J.; Props, R.; Kerckhof, F.-M.; Skirtach, A.; Waegeman, W.; Boon, N.

10.1101/545681 — bioengineering — Posted on 2019-05-24

813 Smartphone screening for neonatal jaundice via ambient-subtracted sclera chromaticity: neoSCB app pilot study

Outlaw, F.; Nixon, M.; Odeyemi, O.; MacDonald, L. W.; Meek, J.; Leung, T. S.

10.1101/627034 — bioengineering — Posted on 2019-05-24

814 The FluPRINT dataset, a multidimensional analysis of the influenza vaccine imprint on the immune system

Tomic, A.; Tomic, I.; Dekker, C. L.; Maecker, H. T.; Davis, M. M.

10.1101/564062 — systems biology — Posted on 2019-05-24

815 Engineering bacteriocin-mediated resistance against plant pathogenic bacteria in plants

Rooney, W. M.; Grinter, R.; Correia, A.; Parkhill, J.; Walker, D.; Milner, J. J.

10.1101/649178 — plant biology — Posted on 2019-05-24

816 Type 2 Diabetes: One Disease, Many Pathways

Sherman, A.; Ha, J.

10.1101/648816 — physiology — Posted on 2019-05-24

817 Malpighamoeba infection compromises fluid secretion and P-glycoprotein detoxification in Malpighian tubules

Rossi, M.; Niven, J. E.; Ott, S. R.

10.1101/649483 — physiology — Posted on 2019-05-24

818 Source-Sink Modifications Affect Leaf Senescence and Grain Mass in Wheat

Lv, X.; Zhang, Y.; Zhang, Y.; Fan, S.; Kong, L.

10.1101/647743 — physiology — Posted on 2019-05-24

819 Novel Pure αVβ3 Integrin Antagonists That Do Not Induce Receptor Extension, Prime the Receptor, or Enhance Angiogenesis at Low Concentrations

Li, J.; Fukase, Y.; Shang, Y.; Zou, W.; Munoz-Felix, J.; Buitrago, L.; van Agthoven, J.; Zhang, Y.; Hara, R.; Tanaka, Y.; Okamoto, R.; Yasui, T.; Nakahata, T.; Imaeda, T.; Aso, K.; Zhou, Y.; Locuson, C.; Nesic, D.; Duggan, M.; Takagi, J.; Vaughan, R.; Walz, T.; Hodivala-Dilke, K.; Teitelbaum, S. L.; Arnaout, M. A.; Filizola, M.; Foley, M. A.; Coller, B. S.

10.1101/620765 — pharmacology and toxicology — Posted on 2019-05-24

820 Monetary feedback modulates performance and electrophysiological indices of belief updating in reward learning

Bennett, D.; Sasmita, K.; Maloney, R. T.; Murawski, C.; Bode, S.

10.1101/183665 — neuroscience — Posted on 2019-05-24

821 The parallel auditory brainstem response

Polonenko, M. J.; Maddox, R. K.

10.1101/648659 — neuroscience — Posted on 2019-05-24

822 Exacerbation of blood brain barrier dysfunction and brain injury after aneurysmal subarachnoid hemorrhage in endothelial specific S1PR1 knock out mice

Ito, A.; Uchida, H.; Kim, G. S.; Faraco, G.; Proia, R.; Niizuma, K.; Tominaga, T.; Anrather, J.; Iadecola, C.; Kluk, M.; Sanchez, T.

10.1101/357236 — neuroscience — Posted on 2019-05-24

823 Improved Statistical Efficiency of Simultaneous Multi-Slice fMRI by Reconstruction with Spatially Adaptive Temporal Smoothing

Chiew, M.; Miller, K. L.

10.1101/646554 — neuroscience — Posted on 2019-05-24

824 Rats can learn a temporal task in a single session

Bussotti Reyes, M.; de Miranda, D. H.; Chiuffa Tunes, G.; Salvador Caetano, M.

10.1101/649954 — neuroscience — Posted on 2019-05-24

825 Intermittent theta burst stimulation at personalized targets reduces the functional connectivity of the default mode network in healthy subjects

Singh, A.; Erwin-Grabner, T.; Sutcliffe, G.; Paulus, W.; Dechent, P.; Antal, A.; Goya-Maldonado, R.

10.1101/646265 — neuroscience — Posted on 2019-05-24

826 An evolutionary-based approach to quantify the genetic barrier to drug resistance in fast-evolving viruses: an application to HIV-1 subtypes and integrase inhibitors

Theys, K.; Libin, P.; van Laethem, K.; Abecasis, A.

10.1101/647297 — microbiology — Posted on 2019-05-24

827 Integrative QTL analysis of gene expression and chromatin accessibility identifies multi-tissue patterns of genetic regulation

KEELE, G. R.; Quach, B. C.; Israel, J. W.; Chappell, G. A.; Lewis, L.; Safi, A.; Simon, J. M.; Cotney, P.; Crawford, G. E.; Valdar, W.; Rusyn, I.; Furey, T. S.

10.1101/588723 — genomics — Posted on 2019-05-24

828 TeoNAM: a nested association mapping population for domestication and agronomic trait analysis in maize

Chen, Q.; Yang, C. J.; York, A. M.; Xue, W.; Daskalska, L. L.; DeValk, C. A.; Krueger, K. W.; Lawton, S. B.; Spiegelberg, B. G.; Schnell, J. M.; Neumeyer, M. A.; Perry, J. S.; Peterson, A. C.; Kim, B.; Bergstrom, L.; Yang, L.; Barber, I. C.; Tian, F.; Doebley, J. F.

10.1101/647461 — genetics — Posted on 2019-05-24

829 Epigenome and transcriptome landscapes highlight dual roles of proinflammatory players in a perinatal model of white matter injury

Schang, A.-L.; van Steenwinckel, J.; Lipecki, J.; Rich-Griffin, C.; Woolley-Allen, K.; Dyer, N.; Le Charpentier, T.; Schafer, P.; Fleiss, B.; Ott, S.; Saberan-Djoneidi, D.; Mezger, V.; Gressens, P.

10.1101/411702 — developmental biology — Posted on 2019-05-24

830 Differential sperm motility mediates the sex ratio drive shaping mouse sex chromosome evolution

Rathje, C. C.; Johnson, E. E.; Drage, D.; Patinioti, C.; Silvestri, G.; Affara, N. A.; Ialy-Radio, C.; Cocquet, J. A.; Skinner, B. M.; Ellis, P. J.

10.1101/649707 — developmental biology — Posted on 2019-05-24

831 DNA damage response in peripheral mouse blood leukocytes in vivo after variable, low-dose rate exposure

Wang, Q.; Pujol, M. C.; Taveras, M.; Perrier, J.; Bueno-Beti, C.; Shuryak, I.; Brenner, D. J.; Turner, H. C.

10.1101/648568 — cell biology — Posted on 2019-05-24

832 Mechanisms of chromosome biorientation and bipolar spindle assembly analyzed by computational modeling

Edelmaier, C. J.; Lamson, A. R.; Gergely, Z. R.; Ansari, S.; Blackwell, R.; McIntosh, J. R.; Glaser, M. A.; Betterton, M. D.

10.1101/649913 — cell biology — Posted on 2019-05-24

833 Using a continuum model to decipher the mechanics of embryonic tissue spreading from time-lapse image sequences: An approximate Bayesian computation approach

Stepien, T.; Lynch, H. E.; Yancey, S. X.; Dempsey, L.; Davidson, L. A.

10.1101/460774 — biophysics — Posted on 2019-05-24

834 Exautomate: A user-friendly tool for region-based rare variant association analysis (RVAA)

Davis, B. D.; Dron, J. S.; Robinson, J. F.; Hegele, R. A.; Lizotte, D. J.

10.1101/649368 — bioinformatics — Posted on 2019-05-24

835 Modification of primary amines to higher order amines reduces in vivo hematological and immunotoxicity of cationic nanocarriers through TLR4 and complement pathways

Toy, R.; Pradhan, P.; Ramesh, V.; Di Paolo, N. C.; Lash, B.; Liu, J.; Blanchard, E. L.; Santangelo, P. J.; Shayakhmetov, D. M.; Roy, K.

10.1101/647305 — bioengineering — Posted on 2019-05-24

836 Structural Lipidomics and Molecular Imaging of C=C Positional Isomers Enabled by mCPBA Epoxidation with Tandem Mass Spectrometry

Kuo, T.-H.; Chung, H.-H.; Chang, H.-Y.; Wang, M.-Y.; Shen, T.-L.; Hsu, C.-C.

10.1101/649103 — biochemistry — Posted on 2019-05-24

837 Relationship between footshock intensity, post-training corticosterone release and contextual fear memory specificity over time

dos Santos Correa, M.; dos Santos Vaz, B.; Grisanti, G. D. V.; de Paiva, J. P. Q.; Tiba, P. A.; Fornari, R. V.

10.1101/643098 — animal behavior and cognition — Posted on 2019-05-24

838 Learning may help pollinators find their host plants in polluted landscapes

Cook, B.; Haverkamp, A.; Hansson, B. S.; Roulston, T.; Lerdau, M.; Knaden, M.

10.1101/649251 — animal behavior and cognition — Posted on 2019-05-24

839 Identifying gene function and module connections by the integration of multi-species expression compendia

Li, H.; Rukina, D.; David, F. P. A.; Li, T. Y.; Oh, C.-M.; Gao, A. W.; Katsyuba, E.; Bou Sleiman, M.; Komljenovic, A.; Huang, Q.; Williams, R. W.; Robinson-Rechavi, M. W.; Schoonjans, K.; Morgenthaler, S.; Auwerx, J.

10.1101/649079 — systems biology — Posted on 2019-05-24

840 Neural trajectories in the supplementary motor area and primary motor cortex exhibit distinct geometries, compatible with different classes of computation

Russo, A.; Khajeh, R.; Bittner, S. R.; Perkins, S. M.; Cunningham, J. P.; Abbott, L. F.; Churchland, M. M.

10.1101/650002 — neuroscience — Posted on 2019-05-24

841 Visual epidural field potentials possess high functional specificity in single trials.

Fischer, B.; Schander, A.; Kreiter, A. K.; Lang, W.; Wegener, D.

10.1101/646612 — neuroscience — Posted on 2019-05-24

842 Manual stabilization reveals a transient role for balance control during locomotor adaptation

Park, S.; Finley, J. M.

10.1101/647453 — neuroscience — Posted on 2019-05-24

843 Comparing Alternative Computational Models of the Stroop Task Using Effective Connectivity Analysis of fMRI Data

Ketola, M.; Jiang, L. P.; Stocco, A.

10.1101/647271 — neuroscience — Posted on 2019-05-24

844 FRONTAL MIDLINE THETA REFLECTS COGNITIVE CONTROL DURING PLANNING.

Domic-Siede, M.; Irani, M.; Valdes, J.; Perrone-Bertolotti, M.; Ossandon, T.

10.1101/648758 — neuroscience — Posted on 2019-05-24

845 Sensory Processing and Categorization in Cortical and Deep Neural Networks

Pinotsis, D. A.; Siegel, M. K.; Miller, E. K.

10.1101/647222 — neuroscience — Posted on 2019-05-24

846 Fine chromatin-driven mechanism of transcription interference by antisense noncoding transcription

Gill, J. K.; Maffioletti, A.; Garcia-Molinero, V.; Stutz, F.; Soudet, J.

10.1101/649434 — molecular biology — Posted on 2019-05-24

847 Pseudomonas isolates degrade and form biofilms on polyethylene terephthalate (PET) plastic

Vague, M.; Chan, G.; Roberts, C.; Swartz, N.; Mellies, J.

10.1101/647321 — microbiology — Posted on 2019-05-24

848 Proteome analysis of xylose metabolism in Rhodotorula toruloides during lipid production

Tiukova, I.; Brandenburg, J.; Blomqvist, J.; Sampels, S.; Mikkelsen, N.; Skaugen, M.; Arntzen, M. O.; Nielsen, J.; Sandgren, M.; Kerkhoven, E. J.

10.1101/601930 — microbiology — Posted on 2019-05-24

849 A Human Liver Cell Atlas: Revealing Cell Type Heterogeneity and Adult Liver Progenitors by Single-Cell RNA-sequencing

Aizarani, N.; Saviano, A.; Sagar, ; Mailly, L.; Durand, S.; Pessaux, P.; Baumert, T. F.; Grün, D.

10.1101/649194 — genomics — Posted on 2019-05-24

850 Widespread microbial mercury methylation genes in the global ocean

Villar, E.; Cabrol, L.; Heimburger-Boavida, L. E.

10.1101/648329 — genomics — Posted on 2019-05-24

851 Development of Coupling Controlled Polymerizations by Adapter-ligation in Mate-pair Sequencing for Detection of Various Genomic Variants in One Single Assay

Dong, Z.; Zhao, X.; Li, Q.; Yang, Z.; Xi, Y.; Alexeev, A.; Shen, H.; Wang, O.; Ruan, J.; Ren, H.; Wei, H.; Qi, X.; Li, J.; Zhu, X.; Zhang, Y.; Peng, D.; Kong, X.; Kirkconnell, K.; Alferov, O.; Giles, S.; Yamtich, J.; Kermani, B. G.; Dong, C.; Liu, P.; Mi, Z.; Zhang, W.; Xu, X.; Drmanac, R.; Choy, K. W.; Jiang, Y.

10.1101/400689 — genomics — Posted on 2019-05-24

852 Systematics and geographical distribution of Galba species, a group of cryptic and worldwide freshwater snails

Alda, P.; Lounnas, M.; Vazquez, A. A.; Ayaqui, R.; Calvopina, M.; Celi-Erazo, M.; Dillon, R.; Gonzalez Ramirez, L. C.; Loker, E. S.; Muzzio-Aroca, J.; Narvaez, A. O.; Noya, O.; Pereira, A. E.; Robles, L. M.; Rodriguez-Hidalgo, R.; Uribe, N.; David, P.; Jarne, P.; Pointier, J.-P.; Hurtrez-Bousses, S.

10.1101/647867 — evolutionary biology — Posted on 2019-05-24

853 REVEALING THE COLOURFUL SIDE OF BIRDS: SPATIAL DISTRIBUTION OF CONSPICUOUS PLUMAGE COLOURS ON THE BODY OF AUSTRALIAN BIRDS

Delhey, K.

10.1101/647727 — evolutionary biology — Posted on 2019-05-24

854 Reconsidering the management paradigm of fragmented populations

Kolodny, O.; McLaren, M. R.; Greenbaum, G.; Ramakrishnan, U.; Feldman, M. W.; Petrov, D.; Taylor, R. W.

10.1101/649129 — ecology — Posted on 2019-05-24

855 Semaphorin 7a dependent programs of cell surivival, matrix remodeling, and EMT drive postpartum breast tumor progression

Tarullo, S.; Hill, R.; Hansen, K.; Behbod, F.; Borges, V. F.; Nelson, A.; Lyons, T. R.

10.1101/631044 — cancer biology — Posted on 2019-05-24

856 Nanomechanics and co-transcriptional folding of Spinach and Mango

Mitra, J.; Ha, T.

10.1101/650119 — biophysics — Posted on 2019-05-24

857 Does the margin of stability measure predict stability of gait with a constrained base of support?

Gill, L.; Huntley, A.; Mansfield, A.

10.1101/646943 — bioengineering — Posted on 2019-05-24

858 Accurate and Efficient Gene Function Prediction using a Multi-Bacterial Network

Law, J. N.; Kale, S. D.; Murali, T. M.

10.1101/646687 — systems biology — Posted on 2019-05-24

859 Repair, resilience and asymmetric segregation of damage in the context of replicative ageing: it is a balancing act

Borgqvist, J.; Welkenhuysen, N.; Cvijovic, M.

10.1101/446302 — systems biology — Posted on 2019-05-24

860 Grades, motivation, and resilience: the role cognitive and non-cognitive traits play in the undergraduate research student selection process

Suart, C.; Heirwegh, M.; Vulcu, F.

10.1101/641670 — scientific communication and education — Posted on 2019-05-24

861 Structural imaging of native cryo-preserved secondary cell walls reveals presence of macrofibrils composed of cellulose, lignin and xylan.

Lyczakowski, J. J.; Bourdon, M.; Terrett, O. M.; Helariutta, Y.; Wightman, R.; Dupree, P.

10.1101/648360 — plant biology — Posted on 2019-05-24

862 Inference of Synaptic Connectivity and External Variability in Neural Microcircuits

Baker, C.; Froudarakis, E.; Yatsenko, D.; Tolias, A. S.; Rosenbaum, R.

10.1101/650069 — neuroscience — Posted on 2019-05-24

863 Distinct properties of layer 3 pyramidal neurons from prefrontal and parietal areas of the monkey neocortex

Gonzalez-Burgos, G.; Miyamae, T.; Krimer, Y. L.; Gulchina, Y.; Pafundo, D. E.; Krimer, O.; Bazmi, H. H.; Arion, D. F.; Enwright, J. F.; Fish, K. N.; Lewis, D. A.

10.1101/649228 — neuroscience — Posted on 2019-05-24

864 Neuronal TLR4 signaling enhances AMPA currents and drives posttraumatic epileptogenesis

Korgaonkar, A. A.; Li, Y.; Shekhar, D.; Subramanian, D.; Guevarra, J.; Swietek, B.; Pallottie, A.; Singh, S.; Kella, K.; Elkabes, S.; Santhakumar, V.

10.1101/649780 — neuroscience — Posted on 2019-05-24

865 Connecting Concepts in the Brain: Mapping Cortical Representations of Semantic Relations

Zhang, Y.; Han, K.; Worth, R.; Liu, Z.

10.1101/649939 — neuroscience — Posted on 2019-05-24

866 Intentions of Canadian health professionals towards recommending exercise to people living with ALS.

Jones, K. E.; Berry, T. R.; Dal Bello-Haas, V.

10.1101/648790 — neuroscience — Posted on 2019-05-24

867 Progressive myoclonic epilepsy-associated gene Kctd7 regulates retinal neurovascular patterning and function

Alevy, J.; Burger, C. A.; Albrecht, N. E.; Jiang, D.; Samuel, M. A.

10.1101/647008 — neuroscience — Posted on 2019-05-24

868 Neurogenetic basis of personality

Valk, S. L.; Hoffstaedter, F.; Camilleri, J.; Kochunov, P.; Yeo, B. T. T.; Eickhoff, S. B.

10.1101/645945 — neuroscience — Posted on 2019-05-24

869 Action representation in the mouse parieto-frontal network

Tombaz, T.; Dunn, B. A.; Hovde, K.; Cubero, R. J.; Mimica, B.; Mamidanna, P.; Roudi, Y.; Whitlock, J. R.

10.1101/646414 — neuroscience — Posted on 2019-05-24

870 Antibody cross-reactivity accounts for widespread appearance of m1A in 5 UTRs

Grozhik, A. V.; Olarerin-George, A. O.; Sindelar, M.; Li, X.; Gross, S.; Jaffrey, S. R.

10.1101/648345 — molecular biology — Posted on 2019-05-24

871 Cytometric fingerprints of gut microbiota predict Crohn’s disease state

Rubbens, P.; Props, R.; Kerckhof, F. - M.; Boon, N.; Waegeman, W.

10.1101/649210 — microbiology — Posted on 2019-05-24

872 Signatures of replication timing, recombination and sex in the spectrum of rare variants on the human X chromosome and autosomes

Agarwal, I.; Przeworski, M.

10.1101/519421 — genomics — Posted on 2019-05-24

873 A bird’s white-eye view on neosex chromosome evolution

Leroy, T.; Anselmetti, Y.; Tilak, M.-K.; Berard, S.; Csukonyi, L.; Gabrielli, M.; Scornavacca, C.; Mila, B.; Thebaud, C.; Nabholz, B.

10.1101/505610 — evolutionary biology — Posted on 2019-05-24

874 Novel mouse model of encephalocele: post-neurulation origin and relationship to open neural tube defects

Rolo, A.; Galea, G. L.; Savery, D.; Greene, N.; Copp, A.

10.1101/649624 — developmental biology — Posted on 2019-05-24

875 Oxidized products of α-linolenic acid negatively regulate cellular survival and motility of breast cancer cells

Gutierrez-Pajares, J. L.; Ben Hassen, C.; Oger, C.; Galano, J.-M.; Durand, T.; Frank, P. G.

10.1101/517094 — cancer biology — Posted on 2019-05-24

876 A least microenvironmental uncertainty principle (LEUP) as a generative model of collective cell migration mechanisms.

Barua, A.; Navas Sedeno, J. M.; Hatzikirou, H.

10.1101/404889 — biophysics — Posted on 2019-05-24

877 Genome-wide heritability analysis of severe malaria susceptibility and resistance reveals evidence of polygenic inheritance

Damena, D.; Chimusa, E. R.

10.1101/649095 — bioinformatics — Posted on 2019-05-24

878 A humanness dimension to visual object coding in the brain

Contini, E. W.; Goddard, E.; Grootswagers, T.; Williams, M.; Carlson, T.

10.1101/648998 — neuroscience — Posted on 2019-05-24

879 Overt attention towards appetitive cues enhances their subjective value, independent of orbitofrontal cortex activity

McGinty, V. B.

10.1101/648931 — neuroscience — Posted on 2019-05-24

880 Retinal stabilization reveals limited influence of extraretinal signals on heading tuning in the medial superior temporal area

Manning, T. S.; Britten, K. H.

10.1101/643189 — neuroscience — Posted on 2019-05-24

881 Time-dependent Canonical Correlation Analysis for Multilevel Time Series

Cao, X.; Ke, J.; Sandstede, B.; Luo, X.

10.1101/650101 — neuroscience — Posted on 2019-05-24

882 Emergence of an invariant representation of texture in primate somatosensory cortex

Lieber, J. D.; Bensmaia, S.

10.1101/646042 — neuroscience — Posted on 2019-05-24

883 Dynamic colonization of microbes and their functions after fecal microbiota transplantation for inflammatory bowel disease

Chu, N. D.; Crothers, J. W.; Nguyen, L. T.; Kearney, S. M.; Smith, M. B.; Kassam, Z.; Collins, C.; Xavier, R.; Moses, P. L.; Alm, E. J.

10.1101/649384 — microbiology — Posted on 2019-05-24

884 Systemic inflammation and risk of age-associated diseases in people living with HIV on long term suppressive antiretroviral therapy

Babu, H.; Ambikan, A. T.; Gabriel, E. E.; Svensson Akusjarvi, S.; Palaniapan, A. N.; Sundaraj, V.; Muppani, N. R.; Sperk, M.; Cheedarla, N.; Sridhar, R.; Tripathy, S. P.; Nowak, P.; Hanna, L. E.; Neogi, U.

10.1101/418012 — immunology — Posted on 2019-05-24

885 Genotyping-by-sequencing and microarrays are complementary for detecting quantitative trait loci by tagging different haplotypes in association studies

Negro, S. S.; Millet, E.; Madur, D.; Bauland, C.; Combes, V.; Welcker, C.; Tardieu, F.; Charcosset, A.; Nicolas, S. D.

10.1101/476598 — genomics — Posted on 2019-05-24

886 Gene-expression profiling of single cells from archival tissue with laser-capture microdissection and Smart-3SEQ

Foley, J. W.; Zhu, C.; Jolivet, P.; Zhu, S. X.; Lu, P.; Meaney, M. J.; West, R. B.

10.1101/207340 — genomics — Posted on 2019-05-24

887 Overexpression of a non-muscle RBFOX2 isoform triggers cardiac conduction defects in myotonic dystrophy

Misra, C.; Bangru, S.; Lin, F.; Lam, K.; Koenig, S. N.; Lubbers, E. R.; Hedhli, J.; Murphy, N. P.; Parker, D. J.; Dobrucki, L. W.; Cooper, T. A.; Tajkhorshid, E.; Mohler, P. J.; Kalsotra, A.

10.1101/649715 — genetics — Posted on 2019-05-24

888 The roles of Amh in zebrafish gonad development and sex determination

Yan, Y.-l.; Batzel, P.; Titus, T.; Sydes, J.; Desvignes, T.; Draper, B.; Postlethwait, J.

10.1101/650218 — genetics — Posted on 2019-05-24

889 Autumn shifts in cold tolerance metabolites in overwintering adult mountain pine beetles

Thompson, K. M.; Murray, B. W.; Huber, D. P. W.

10.1101/650044 — ecology — Posted on 2019-05-24

890 Interpretable attention model in transcription factor binding site prediction with deep neural networks

Chen, C.; Hou, J.; Shi, X.; Yang, H.; Birchler, J. A.; Cheng, J.

10.1101/648691 — bioinformatics — Posted on 2019-05-24

891 Defining subpopulations of differential drug response to reveal novel target populations

Toh, T. S.; Keshava, N.; Menden, M.; Wang, D.

10.1101/435370 — bioinformatics — Posted on 2019-05-24

892 Can processing of face trustworthiness bypass early visual cortex? A transcranial magnetic stimulation masking study

Janssens, S. E. W.; Sack, A. T.; Jessen, S.; de Graaf, T. A.

10.1101/649350 — neuroscience — Posted on 2019-05-24

893 Altered protein expression of galactose and N-acetylgalactosamine transferases in schizophrenia superior temporal gyrus

Mueller, T. M.; Mallepalli, N. R.; Meador-Woodruff, J. H.

10.1101/649996 — neuroscience — Posted on 2019-05-24

894 Constraints on Persistent Activity in a Biologically Detailed Network Model of the Prefrontal Cortex with Heterogeneities

Hass, J.; Ardid, S.; Sherfey, J.; Kopell, N.

10.1101/645663 — neuroscience — Posted on 2019-05-24

895 An arbitrary-spectrum spatial visual stimulator for vision research

Franke, K.; Maia Chagas, A.; Zhao, Z.; Zimmermann, M. J. Y.; Qiu, Y.; Szatko, K.; Baden, T.; Euler, T.

10.1101/649566 — neuroscience — Posted on 2019-05-24

896 Evidence for extensive anaerobic dechlorination and transformation of the pesticide chlordecone (C10Cl10O) in soil from Guadeloupe

Lomheim, L.; Laquitaine, L.; Rambinaising, S.; Flick, R.; Starostine, A.; Jean-Marius, C.; Gaspard, S.; Edwards, E. A.

10.1101/650200 — microbiology — Posted on 2019-05-24

897 Three-dimensional connectivity and chromatin environment mediate the activation efficiency of mammalian DNA replication origins

10.1101/644971 — genomics — Posted on 2019-05-24

898 Genetic comorbidity between major depression and cardio-metabolic disease, stratified by age at onset of major depression.

Hagenaars, S. P.; Coleman, J. R. I.; Choi, S.; Gaspar, H. A.; Adams, M. J.; Howard, D.; Hodgson, K.; Traylor, M.; Air, T. M.; Andlauer, T. F. M.; Arolt, V.; Baune, B. T.; Binder, E. B.; Blackwood, D. H. R.; Boomsma, D. I.; Campbell, A.; Cearns, M.; Czamara, D.; Dannlowski, U.; Domschke, K.; de Geus, E. J. C.; Hamilton, S. P.; Hayward, C.; Hickie, I.; Hottenga, J. J.; Ising, M.; Jones, I.; Jones, L. A.; Kutalik, Z.; Lucae, S.; Martin, N.; Milaneschi, Y.; Mueller-Myhsok, B.; Owen, M. J.; Padmanabhan, S.; Penninx, B. W. J. H.; Pistis, G.; Porteous, D. J.; Preisig, M.; Ripke, S.; Shyn, S. I.; Sull

10.1101/645077 — genetics — Posted on 2019-05-24

899 The C. elegans Tubby homolog dynamically modulates olfactory cilia membrane morphogenesis and phospholipid composition

DiTirro, D.; Philbrook, A.; Rubino, K.; Sengupta, P.

10.1101/650168 — cell biology — Posted on 2019-05-24

900 Co-occurring alterations in the RAS-MAPK pathway limit response to MET inhibitor treatment in MET exon 14 skipping mutation positive lung cancer

Rotow, J. K.; Gui, P.; Wu, W.; Raymond, V. M.; Lanman, R. B.; Kaye, F. J.; Peled, N.; Fece de la Cruz, F.; Nadres, B.; Corcoran, R. B.; Yeh, I.; Bastian, B. C.; Starostik, P.; Newsom, K.; Olivas, V. R.; Wolff, A. M.; Fraser, J. S.; Collisson, E. A.; McCoach, C. E.; Camidge, D. R.; Pacheco, J.; Bazhenova, L.; Li, T.; Bivona, T. G.; Blakely, C. M.

10.1101/374181 — cancer biology — Posted on 2019-05-24

901 Targeted brain tumor radiotherapy using an Auger emitter

Pirovano, G.; Jannetti, S. A.; Carter, L. M.; Sadique, A.; Kossatz, S.; Guru, N.; Demetrio De Souza Franca, P.; Maeda, M.; Zeglis, B. M.; Lewis, J. S.; Humm, J. L.; Reiner, T.

10.1101/649764 — cancer biology — Posted on 2019-05-24

902 Galaxy External Display Applications: Closing a dataflow interoperability loop

Blankenberg, D.; Chilton, J.; Coraor, N.

10.1101/642280 — bioinformatics — Posted on 2019-05-24

903 CD38 contributes to human natural killer cell responses through a role in immune synapse formation

Le Gars, M.; Seiler, C.; Kay, A.; Bayless, N.; Sola, E.; Starosvetsky, E.; Moore, L.; Shen-Orr, S.; Aziz, N.; Dekker, C.; Khatri, P.; Swan, G.; Davis, M.; Holmes, S.; Blish, C.

10.1101/349084 — immunology — Posted on 2019-05-24

904 Time elapsed between choices in a probabilistic task correlates with repeating the same decision.

Jablonska, J. M.; Szumiec, L.; Zielinski, P.; Rodriguez Parkitna, J.

10.1101/643965 — animal behavior and cognition — Posted on 2019-05-24

905 Breeding for broad-spectrum disease resistance alters the maize leaf microbiome

Wagner, M. R.; Busby, P. E.; Balint-Kurti, P. J.

10.1101/647446 — plant biology — Posted on 2019-05-24

906 Algorithms for efficiently collapsing reads with Unique Molecular Identifiers

Liu, D.

10.1101/648683 — bioinformatics — Posted on 2019-05-24

907 Multiplex secretome engineering enhances recombinant protein production and purity

Kol, S.; Ley, D.; Wulff, T.; Decker, M.; Arnsdorf, J.; Gutierrez, J. M.; Chiang, A. W.; Pedersen, L. E.; Kildegaard, H. F.; Lee, G. M.; Lewis, N.

10.1101/647214 — bioengineering — Posted on 2019-05-24

908 PfCERLI1, a conserved rhoptry associated protein essential for invasion by Plasmodium falciparum merozoites.

Liffner, B.; Frölich, S.; Heinemann, G. K.; Liu, B.; Dixon, M. W. A.; Gilberger, T. W.; Wilson, D. W.

10.1101/646299 — microbiology — Posted on 2019-05-24

909 A role for Toxoplasma gondii chloroquine resistance transporter in bradyzoite viability and digestive vacuole maintenance

Kannan, G.; Di Cristina, M.; Schultz, A. J.; Huynh, M.-H.; Wang, F.; Schultz, T. L.; Lunghi, M.; Coppens, I.; Carruthers, V. B.

10.1101/647669 — microbiology — Posted on 2019-05-24

910 Metabolic reprogramming and elevation of glutathione in chromophobe renal cell carcinomas

Xiao, Y.; Clima, R.; Busch, J. F.; Rabien, A.; Kilic, E.; Villegas, S.; Tuerkmen, S.; Timmermann, B.; Attimonelli, M.; Jung, K.; Meierhofer, D.

10.1101/649046 — cancer biology — Posted on 2019-05-24

911 Comparison of Escherichia coli surface attachment methods for single-cell, in vivo microscopy

Wang, Y. K.; Krasnopeeva, E.; Lin, S.-Y.; Bai, F.; Pilizota, T.; Lo, C.-J.

10.1101/648840 — systems biology — Posted on 2019-05-24

912 PI3K activation prevents Aβ42-induced synapse loss and favors insoluble amyloid deposits formation

Arnes, M.; Romero, N.; Casas-Tinto, S.; Acebes, A.; Ferrus, A.

10.1101/649087 — neuroscience — Posted on 2019-05-24

913 EGR1 transcriptional control of human cytomegalovirus latency

Buehler, J. C.; Carpenter, E.; Zeltzer, S.; Igarashi, S.; Rak, M.; Mikell, I.; Nelson, J. A.; Goodrum, F.

10.1101/648543 — molecular biology — Posted on 2019-05-24

914 Leishmania targets the macrophage epigenome and dampens the NF-κB/NLRP3- mediated inflammatory response

Lecoeur, H.; Prina, E.; Rosazza, T.; Kokou, K.; N'Diaye, P.; Aulner, N.; Bussotti, G.; Varet, H.; Weil, R.; Xing, Y.; Meng, G. X.; Spaeth, G. F.

10.1101/649632 — cell biology — Posted on 2019-05-24

915 Electron cryo-microscopy of Bacteriophage PR772 reveals the composition and structure of the elusive vertex complex and the capsid architecture

Narayana Reddy, H. K.; Carroni, M.; Janos, H.; Svenda, M.

10.1101/645523 — biophysics — Posted on 2019-05-24

916 Computational design of a modular protein sense/response system

Glasgow, A. A.; Huang, Y.-M.; Mandell, D. J.; Thompson, M.; Ritterson, R.; Loshbaugh, A. L.; Pellegrino, J.; Krivacic, C.; Pache, R. A.; Barlow, K. A.; Ollikainen, N.; Jeon, D.; Kelly, M. J. S.; Fraser, J. S.; Kortemme, T.

10.1101/648485 — biophysics — Posted on 2019-05-24

917 Upgraded molecular models of the human KCNQ1 potassium channel

Kuenze, G.; Duran, A. M.; Woods, H.; Brewer, K. R.; McDonald, E. F.; Vanoye, C. G.; George, A. L.; Sanders, C. R.; Meiler, J.

10.1101/648634 — biophysics — Posted on 2019-05-24

918 Age dependence of modern clinical risk groups for localized prostate cancer -- a population-based study

Huynh-Le, M.-P.; Myklebust, T. A.; Feng, C.; Karunamuni, R.; Johannesen, T. B.; Dale, A. M.; Andreassen, O. A.; Seibert, T. M.

10.1101/648519 — epidemiology — Posted on 2019-05-24

919 The Prevalence and Patterns of Combined Psychotropic Polypharmacy among Acute Care Hospitals in Japan

Shimizu, S.; Okumura, Y.; Ishikawa, K. B.; Matsuda, S.; Ito, H.; Fushimi, K.

10.1101/649012 — epidemiology — Posted on 2019-05-24

920 Circulating electrolytes and the prevalence of atrial fibrillation and supraventricular ectopy: the Atherosclerosis Risk in Communities (ARIC) Study

Alonso, A.; Rooney, M.; Chen, L. Y.; Norby, F.; Saenger, A.; Soliman, E.; O'Neal, W.; Hootman, K.; Selvin, E.; Lutsey, P.

10.1101/645176 — epidemiology — Posted on 2019-05-24

921 Modelling tick bite risk by combining random forests and count data regression models

Garcia-Marti, I.; Zurita-Milla, R.; Swart, A.

10.1101/642728 — epidemiology — Posted on 2019-05-24

922 Bayesian model discrimination for partially-observed epidemic models

Walker, J. N.; Black, A. J.; Ross, J. V.

10.1101/646067 — epidemiology — Posted on 2019-05-24

923 Severity Index for Suspected Arbovirus (SISA): machine learning for accurate prediction of hospitalization in subjects suspected of arboviral infection

Sippy, R.; Farrell, D. F.; Lichtenstein, D.; Nightingale, R.; Harris, M.; Toth, J.; Hantztidiamantis, P.; Usher, N.; Cueva, C.; Barzallo Aguilar, J.; Puthumana, A.; Endy, T.; Stewart-Ibarra, A. M.

10.1101/647206 — epidemiology — Posted on 2019-05-24

924 Genomics of clinal local adaptation in Pinus sylvestris under continuous environmental and spatial genetic setting

Tyrmi, J. S.; Vuosku, J.; Acosta, J. J.; Li, Z.; Sterck, L.; Savolainen, O.; Pyhajarvi, T.

10.1101/647412 — genomics — Posted on 2019-05-24

925 Scalable and cost-effective ribonuclease-based rRNA depletion for bacterial transcriptomics

Huang, Y.; Sheth, R.; Kaufman, A.; Wang, H.

10.1101/645895 — genomics — Posted on 2019-05-24

926 Is it reasonable to account for population structure in genome-wide association studies?

Kim, B.

10.1101/647768 — genetics — Posted on 2019-05-24

927 Technical Note: Efficient and accurate estimation of genotype odds ratios in biobank-based unbalanced case-control studies

Dey, R.; Lee, S.

10.1101/646018 — genomics — Posted on 2019-05-24

928 Next generation sequencing to investigate genomic diversity in Caryophyllales

Pucker, B.; Feng, T.; Brockington, S.

10.1101/646133 — genomics — Posted on 2019-05-24

929 A Novel Type 2 Diabetes Locus in sub-Saharan Africans, ZRANB3, is Implicated in Beta Cell Proliferation

Adeyemo, A. A.; Chen, G.; Doumatey, A. P.; Hostelley, T. L.; Leitch, C. C.; Zhou, J.; Bentley, A. R.; Shriner, D.; Fasanmade, O.; Okafor, G.; Eghan, B.; Agyenim-Boateng, K.; Chandrasekharappa, S.; Adeleye, J.; Balogun, W.; Owusu, S.; Amoah, A.; Acheampong, J.; Johnson, T.; Oli, J.; Adebamowo, C.; South Africa Zulu Type 2 Diabetes Case-Control Stu, ; Collins, F.; Dunston, G.; Zaghloul, N. A.; Rotimi, C. N.

10.1101/646513 — genetics — Posted on 2019-05-24

930 No effect of triple-pulse TMS medial to intraparietal sulcus on online correction for target perturbations during goal-directed hand and foot reaches

Marigold, D. S.; Lajoie, K.; Heed, T.

10.1101/645853 — neuroscience — Posted on 2019-05-24

931 Human cytomegalovirus nuclear capsid motility is non-directed and independent of nuclear actin bundles

Flomm, F.; Borst, E. M.; Günther, T.; Reimer, R.; de Vries, L.; Schneider, C.; Grundhoff, A.; Grünewald, K.; Messerle, M.; Bosse, J.

10.1101/641266 — microbiology — Posted on 2019-05-24

932 Close-Range Interactions Favor Growth in Random-Paired Extracted Soil Bacteria

Dubey, M.; Hadadi, N.; Pelet, S.; Johnson, D. R.; van der Meer, J. R.

10.1101/646190 — microbiology — Posted on 2019-05-24

933 Tomato root transformation followed by inoculation with Ralstonia solanacearum for straightforward genetic analysis of bacterial wilt disease

Morcillo, R.; Zhao, A.; Tamayo-Navarrete, M. I.; Garcia-Garrido, J. M.; Macho, A.

10.1101/646158 — plant biology — Posted on 2019-05-24

934 Learning to Select Actions Shapes Recurrent Dynamics in the Corticostriatal System

Marton, C. D.; Schultz, S.; Averbeck, B.

10.1101/646141 — neuroscience — Posted on 2019-05-24

935 A putative microcin amplifies Shiga toxin 2a production of Escherichia coli O157:H7

Figler, H. M.; Xiaoli, L.; Goswami, K.; Hoffmann, M.; Yao, K.; Dudley, E. G.

10.1101/646182 — microbiology — Posted on 2019-05-24

936 SAME-clustering: Single-cell Aggregated Clustering via Mixture Model Ensemble

Huh, R.; Yang, Y.; Jiang, Y.; Shen, Y.; Li, Y.

10.1101/645820 — bioinformatics — Posted on 2019-05-24

937 Transcriptional bursts explain autosomal random monoallelic expression and affect allelic imbalance

Larsson, A. J. M.; Reinius, B.; Jacob, T.; Dalessandri, T.; Hendriks, G.-J.; Kasper, M.; Sandberg, R.

10.1101/649285 — genomics — Posted on 2019-05-24

938 Comparison of miRNA profiling methods using synthetic miRNA pools and standardized exRNA samples reveals substantial performance differences

Godoy, P. M.; Barczak, A. J.; DeHoff, P.; Srinivasan, S.; Das, S.; Erle, D. J.; Laurent, L. C.

10.1101/645762 — genomics — Posted on 2019-05-24

939 Robust genetic interactions in cancer are enriched in protein-protein interaction pairs

Lord, C. J.; Ryan, C. J.

10.1101/646810 — cancer biology — Posted on 2019-05-24

940 TeXP: Deconvolving the effects of pervasive and autonomous transcription of transposable elements

Navarro, F.; Hoops, J.; Bellfy, L.; Cerveira, E.; Zhu, Q.; Zhang, C.; Lee, C.; Gerstein, M.

10.1101/648667 — bioinformatics — Posted on 2019-05-24

941 Expression quantitative trait loci-derived scores and white matter microstructure in UK Biobank: a novel approach to integrating genetics and neuroimaging

Barbu, M. C.; Spiliopoulou, A.; Colombo, M.; McKeigue, P. M.; Clarke, T.-K.; Howard, D. M.; Adams, M. J.; Shen, X.; Lawrie, S. M.; McIntosh, A. M.; Whalley, H. C.

10.1101/646646 — bioinformatics — Posted on 2019-05-24

942 Clonal replacement of tumor-specific T cells following PD-1 blockade

Yost, K. E.; Satpathy, A. T.; Wells, D. K.; Qi, Y.; Wang, C.; Kageyama, R.; McNamara, K.; Granja, J. M.; Sarin, K. Y.; Brown, R. A.; Gupta, R. K.; Curtis, C.; Bucktrout, S. L.; Davis, M. M.; Chang, A. L. S.; Chang, H. Y.

10.1101/648899 — immunology — Posted on 2019-05-24

943 Imprinting effects of UBE3A loss on synaptic gene networks and Wnt signaling pathways

Lopez, S. J.; Laufer, B. I.; Beitnere, U.; Berg, E.; Silverman, J. L.; Segal, D. J.; LaSalle, J. M.

10.1101/649491 — genomics — Posted on 2019-05-24

944 Phlebotomus papatasi sand fly salivary protein diversity and immune response potential in Egypt and Jordan populations

Flanley, C.; Ramalho-Ortigao, M.; Coutinho-Abreu, I.; Mukbel, R.; Hanafi, H.; El-Hossary, S.; Fawaz, E.; Hoel, D.; Bray, A.; Stayback, G.; Shoue, D.; Kamhawi, S.; Emrich, S.; McDowell, M. A.

10.1101/649517 — genetics — Posted on 2019-05-24

945 Domains of transmission and association of community, school, and household sanitation with soil-transmitted helminth infections among children in coastal Kenya

Oswald, W. E.; Halliday, K. E.; Mcharo, C.; Witek-McManus, S.; Kepha, S.; Gichuki, P. M.; Cano, J.; Diaz-Ordaz, K.; Allen, E.; Mwandawiro, C. S.; Anderson, R. M.; Brooker, S. J.; Pullan, R. L.; Njenga, S. M.

10.1101/649509 — epidemiology — Posted on 2019-05-24

946 A definition of song using human music universals observed in primate calls

Schruth, D.; Templeton, C. N.; Holman, D. J.

10.1101/649459 — evolutionary biology — Posted on 2019-05-24

947 Determinants of birth asphyxia among newborns in Amhara national regional state referral hospitals, Ethiopia

Meshesha, A. D.; Azage, M.; Worku, E.; Bogale, G. G.

10.1101/649467 — epidemiology — Posted on 2019-05-24

948 X-ray phase contrast imaging of Vitis spp. buds shows freezing pattern and correlation between volume and cold hardiness

Kovaleski, A. P.; Londo, J. P.; Finkelstein, K. D.

10.1101/647248 — plant biology — Posted on 2019-05-24

949 Fighting antimicrobial resistance in Pseudomonas aeruginosa with machine learning-enabled molecular diagnostics

Khaledi, A.; Weimann, A.; Schniederjans, M.; Asgari, E.; Kuo, T.-H.; Oliver, A.; Cabot, G.; Kola, A.; Gastmeier, P.; Hogardt, M.; Jonas, D.; Mofrad, M.; Bremges, A.; McHardy, A. C.; Haeussler, S.

10.1101/643676 — microbiology — Posted on 2019-05-24

950 The Firre locus produces a trans-acting RNA molecule that functions in hematopoiesis

Lewandowski, J. P.; Lee, J. C.; Hwang, T.; Sunwoo, H.; Goldstein, J. M.; Groff, A. F.; Chang, N.; Mallard, W.; Williams, A.; Henao-Meija, J.; Flavell, R. A.; Lee, J. T.; Gerhardinger, C.; Wagers, A. J.; Rinn, J. L.

10.1101/648279 — immunology — Posted on 2019-05-24

951 ClassifyMe: a field-scouting software for the identification of wildlife in camera trap images.

Falzon, G.; Lawson, C.; Cheung, K.-W.; Vernes, K.; Ballard, G.; Fleming, P. J.; Glen, A.; Milne, H.; Mather-Zardain, A.; Meek, P. D.

10.1101/646737 — ecology — Posted on 2019-05-24

952 Brassinosteroid signaling controls PILS-dependent nuclear auxin input in Arabidopsis thaliana

Sun, L.; Feraru, E.; Feraru, M. I.; Kleine-Vehn, J.

10.1101/646489 — plant biology — Posted on 2019-05-24

953 Novel Small Molecules Targeting the Intrinsically Disordered Structural Ensemble of α-Synuclein Protect Against Diverse α-Synuclein Mediated Dysfunctions

Toth, G.; Neumann, T.; Berthet, A.; Masliah, E.; Spencer, B.; Tao, J.; Jobling, M.; Gardai, S.; Bertoncini, C.; Cremades, N.; Bova, M.; Ballaron, S.; Chen, X.-H.; Mao, W.; Nguyen, P.; Tabios, M.; Tambe, M.; Rochet, J.-C.; Junker, H.-D.; Schwizer, D.; Sekul, R.; Ott, I.; Anderson, J.; Szoke, B.; Hoffman, W.; Christodoulou, J.; Yednock, T.; Agard, D.; Schenk, D.; McConlogue, L.

10.1101/646505 — neuroscience — Posted on 2019-05-24

954 Parkinson’s disease: a systemic inflammatory disease accompanied by bacterial inflammagens

Adams, B.; Nunes, J. M.; Page, M. J.; Roberts, T.; Carr, J.; Nell, T. A.; Kell, D. B.; Pretorius, E.

10.1101/646307 — neuroscience — Posted on 2019-05-24

955 Transferrin plays a central role to maintain coagulation balance by interacting with clotting factors

Tang, X.; Zhang, Z.; Fang, M.; Han, Y.; Wang, S.; Xue, M.; Li, Y.; Zhang, L.; Wu, J.; Yang, B.; Lu, Q.; Du, X.; Lai, R.

10.1101/646075 — molecular biology — Posted on 2019-05-24

956 The zinc finger proteins ZC3H20 and ZC3H21 stabilise mRNAs encoding membrane proteins and mitochondrial proteins in insect-form Trypanosoma brucei

Liu, B.; Marucha, K. K.; Clayton, C. E.

10.1101/646547 — molecular biology — Posted on 2019-05-24

957 Enabling high-accuracy long-read amplicon sequences using unique molecular identifiers and Nanopore sequencing

Karst, S. M.; Ziels, R.; Kirkegaard, R. H.; Albertsen, M.

10.1101/645903 — molecular biology — Posted on 2019-05-24

958 Altered Nucleoprotein Binding to Influenza Virus RNA Impacts Packaging Efficiency and Replication

Le Sage, V.; Kanarek, J. P.; Nturibi, E.; Nanni, A. V.; Snyder, D. J.; Cooper, V. S.; Lakdawala, S. S.; Lee, N.

10.1101/648261 — microbiology — Posted on 2019-05-24

959 Molecular organization of soluble type III secretion system sorting platform complexes

Bernal, I.; Boernicke, J.; Heidemann, J.; Svergun, D.; Tuukkanen, A.; Uetrecht, C.; Kolbe, M.

10.1101/648071 — microbiology — Posted on 2019-05-24

960 Phenotypic and genotypic consequences of CRISPR/Cas9 editing of the replication origins in the rDNA of Saccharomyces cerevisiae

Sanchez, J. C.; Ollodart, A. R.; Large, C. R. L.; Clough, C.; Alvino, G. M.; Tsuchiya, M.; Crane, M.; Kwan, E.; Kaeberlein, M.; Dunham, M. J.; Raghuraman, M.; Brewer, B. J.

10.1101/647495 — genetics — Posted on 2019-05-24

961 The lottery of spermatogenesis

Kalirad, A.; Safdari, H.; Sadeghi, M.

10.1101/646422 — developmental biology — Posted on 2019-05-24

962 Condensin facilitates sister chromatid separation in actively transcribed DNA regions by relieving the obstructive effect of transcription

Nakazawa, N.; Arakawa, O.; Yanagida, M.

10.1101/644799 — cell biology — Posted on 2019-05-24

963 Design of a genetic layered feedback controller in synthetic biological circuitry

Hu, C. Y.; Murray, R. M.

10.1101/647057 — synthetic biology — Posted on 2019-05-24

964 Gut microbial dysbiosis in individuals with Sjögren’s disease

Mendez, R.; Watane, A.; Farhangi, M.; Cavuoto, K. M.; Leith, T.; Budree, S.; Galor, A.; Banerjee, S.

10.1101/645739 — physiology — Posted on 2019-05-24

965 Analysis of the expression of PIWI-interacting RNAs during cardiac differentiation of human pluripotent stem cells

La Greca, A.; Scarafia, M. A.; Hernandez Canas, M. C.; Perez, N.; Castaneda, S.; Colli, C.; Möbbs, A. M.; Santin Velazque, N. L.; Neiman, G.; Garate, X.; Aban, C.; Waisman, A.; Moro, L. N.; Sevlever, G.; Luzzani, C.; Miriuka, S.

10.1101/639906 — molecular biology — Posted on 2019-05-24

966 Human iPSC gene signatures and X chromosome dosage impact response to WNT inhibition and cardiac differentiation fate

D'Antonio-Chronowska, A.; Donovan, M. K. R.; Benaglio, P.; Young Greenwald, W. W. W.; Ward, M. C.; Matsui, H.; Fujita, K.; Hashem, S.; Soncin, F.; Parast, M.; Adler, E.; Smith, E. N.; D'Antonio, M.; Frazer, K. A.

10.1101/644633 — genomics — Posted on 2019-05-24

967 Viral quasispecies reconstruction via contig abundance estimation in variation graphs

Baaijens, J.; Stougie, L.; Schoenhuth, A.

10.1101/645721 — bioinformatics — Posted on 2019-05-24

968 The Single Cell Transcriptomic Landscape of Early Human Diabetic Nephropathy

Wilson, P. C.; Wu, H.; Kirita, Y.; Uchimura, K.; Rennke, H. G.; Welling, P. A.; Waikar, S. S.; Humphreys, B. D.

10.1101/645424 — genomics — Posted on 2019-05-24

969 Development of a Confinable Gene-Drive System in the Human Disease Vector, Aedes aegypti.

Li, M.; Yang, T.; Kandul, N. P.; Bui, M.; Gamez, S.; Raban, R.; Bennett, J.; Sanchez C., H. M.; Lanzaro, G. C.; Schmidt, H.; Lee, Y.; Marshall, J. M.; Akbari, O. S.

10.1101/645440 — bioengineering — Posted on 2019-05-24

970 A freely available, self-calibrating software for automatic measurement of freezing behavior

E. Amorim, F.; C. Moulin, T.; B. Amaral, O.

10.1101/645770 — neuroscience — Posted on 2019-05-24

971 Interruption of Continuous Opioid Exposure Exacerbates Drug-Evoked Adaptations in Brain Function and Behavior

Lefevre, E. M.; Pisansky, M. T.; Toddes, C.; Baruffaldi, F.; Pravetoni, M.; Kono, T. J.; Rothwell, P. E.

10.1101/646356 — neuroscience — Posted on 2019-05-24

972 A cellular atlas of the developing meninges reveals meningeal fibroblast diversity and function

DeSisto, J.; O'Rourke, R.; Bonney, S.; Jones, H. E.; Guimiot, F.; Jones, K. L.; Siegenthaler, J. A.

10.1101/648642 — neuroscience — Posted on 2019-05-24

973 Female meiotic drive preferentially segregates derived metacentric chromosomes in Drosophila

Stewart, N. B.; Ahmed-Braimah, Y. H.; Cerne, D. G.; McAllister, B.

10.1101/638684 — genetics — Posted on 2019-05-24

974 The rapid regenerative response of a model sea anemone species Exaiptasia pallida is characterised by tissue plasticity and highly coordinated cell communication

van der Burg, C. A.; Pavasovic, A.; Gilding, E. K.; Pelzer, E. S.; Surm, J. M.; Walsh, T. P.; Prentis, P. J.

10.1101/644732 — evolutionary biology — Posted on 2019-05-24

975 Large increases in emissions of methane and nitrous oxide from eutrophication in Lake Erie

Fernandez, J. M.; Townsend-Small, A.; Zastepa, A.; Watson, S. B.; Brandes, J. A.

10.1101/648154 — ecology — Posted on 2019-05-24

976 Mechanosensitive junction remodelling promotes robust epithelial morphogenesis

Staddon, M. F.; Cavanaugh, K. E.; Munro, E. M.; Gardel, M. L.; Banerjee, S.

10.1101/648980 — biophysics — Posted on 2019-05-24

977 Broad Dengue Neutralization in Mosquitoes Expressing an Engineered Antibody

Buchman, A.; Gamez, S.; Li, M.; Antoshechkin, I.; Lee, S.-H.; Wang, S.-W.; Chen, C.-H.; Klein, M. J.; Duchemin, J.-B.; Crowe, J. E.; Paradkar, P. N.; Akbari, O.

10.1101/645481 — bioengineering — Posted on 2019-05-24

978 CImP: Cellular Imprinting Proteomics applied to ocular disorders elicited by Congenital Zika virus Syndrome

Rosa-Fernandes, L.; Barbosa, R. H.; dos Santos, M. L. B.; Angeli, C. B.; Silva, T. P.; Melo, R. C. N.; de Oliveira, G. S.; Lemos, B.; Larsen, M. R.; Cardoso, C. A.; Palmisano, G.

10.1101/648600 — biochemistry — Posted on 2019-05-24

979 Proteostasis collapse halts G1 progression and delimits replicative lifespan

Moreno, D. F.; Jenkins, K.; Morlot, S.; Charvin, G.; Csikasz-Nagy, A.; Aldea, M.

10.1101/648287 — cell biology — Posted on 2019-05-24

980 Aggregation dynamics of charged peptides in water: effect of salt concentration

Ghosh, S.

10.1101/649004 — biophysics — Posted on 2019-05-24

981 Protein Level Variability Determines Phenotypic Heterogeneity in Proteotoxic Stress Response

Guilbert, M.; Anquez, F.; Pruvost, A.; Thommen, Q.; Courtade, E.

10.1101/646653 — systems biology — Posted on 2019-05-24

982 The flavor enhancer maltol increases pigment aggregation in dermal and neural melanophores in Xenopus laevis tadpoles

Dahora, L. I.; Fitzgerald, A.; Emanuel, M.; Baiges, A. F.; Husain, Z.; Thompson, C. K.

10.1101/645606 — pharmacology and toxicology — Posted on 2019-05-24

983 Metabolic adjustment of Drosophila hemocyte number and sessility by an adipokine

Ramond, E.; Petrignani, B.; Dudzic, J. P.; Boquete, J.-P.; Poidevin, M.; Kondo, S.; Lemaitre, B.

10.1101/648626 — immunology — Posted on 2019-05-24

984 Molecular Characterization and Phylogenetic analysis of Wuchereria bancrofti in human blood samples from Malindi and Tana River Delta, endemic regions in Kenya.

Kinyatta, N. M.; Wambua, L.; Mugasa, C.; Kamau, L.; Mutahi, W.; Wachira, D.; Langat, S.; Ichugu, C.; Waigi, E.; Githae, R.; Lusweti, J.; Kagai, J.

10.1101/648220 — evolutionary biology — Posted on 2019-05-24

985 PHLPP1 Counter-regulates STAT1-mediated Inflammatory Signaling

Cohen Katsenelson, K.; Stender, J. D.; Kawashima, A. T.; Lorden, G.; Uchiyama, S.; Nizet, V.; Glass, C. K.; Newton, A. C.

10.1101/647883 — biochemistry — Posted on 2019-05-24

986 Cis-regulatory basis of sister cell type divergence in the vertebrate retina

Murphy, D. P.; Hughes, A. E. O.; Lawrence, K. A.; Myers, C. A.; Corbo, J. C.

10.1101/648824 — molecular biology — Posted on 2019-05-24

987 NUFEB: A Massively Parallel Simulator for Individual-based Modelling of Microbial Communities

Li, B.; Taniguchi, D.; Gedara, J. P.; Gogulancea, V.; Gonzalez-Cabaleiro, R.; Chen, J.; McGough, A. S.; Ofiteru, I. D.; Curtis, T. P.; Zuliani, P.

10.1101/648204 — microbiology — Posted on 2019-05-24

988 Time-Resolved Integrative Optical Imaging of Diffusion during Spreading Depression

Hrabe, J.; Hrabetova, S.

10.1101/648972 — biophysics — Posted on 2019-05-24

989 Second Harmonic Generation Spectroscopy of Membrane Probe Dynamics in Gram-Positive Bacteria

Miller, L. N.; Brewer, W. T.; Williams, J. D.; Fozo, E. M.; Calhoun, T. R.

10.1101/645788 — biophysics — Posted on 2019-05-24

990 Frontal theta and beta oscillations during lower-limb movement in Parkinson’s disease

Singh, A.; Cole, R. C.; Espinoza, A. I.; Brown, D. R.; Cavanagh, J. F.; Narayanan, N.

10.1101/634808 — neuroscience — Posted on 2019-05-24

991 Single cell analysis reveals modified hematopoietic cell composition affecting inflammatory and immunopathological responses in Astyanax mexicanus

Peuss, R.; Box, A. C.; Wang, Y.; Chen, S.; Krishnan, J.; Tsuchiya, D.; Slaughter, B.; Rohner, N.

10.1101/647255 — immunology — Posted on 2019-05-24

992 Comparative Tn-Seq reveals common daptomycin resistance determinants in Staphylococcus aureus despite strain-dependent differences in essentiality of shared cell envelope genes

Coe, K. A.; Lee, W.; Komazin-Meredith, G.; Meredith, T. C.; Grad, Y. H.; Walker, S.

10.1101/648246 — microbiology — Posted on 2019-05-23

993 Spatiotemporal drivers of crop pests and pathogens abundance at the landscape scale

Delaune, T.; Ballot, R.; Gouwie, C.; Maupas, F.; Sausse, C.; Felix, I.; Brun, F.; Barbu, C. M.

10.1101/641555 — ecology — Posted on 2019-05-23

994 Frontal theta and beta oscillations during lower-limb movement in Parkinson’s disease

Singh, A.; Cole, R. C.; Espinoza, A. I.; Brown, D. R.; Cavanagh, J. F.; Narayanan, N.

10.1101/634808 — neuroscience — Posted on 2019-05-23

995 Single cell analysis reveals modified hematopoietic cell composition affecting inflammatory and immunopathological responses in Astyanax mexicanus

Peuss, R.; Box, A. C.; Wang, Y.; Chen, S.; Krishnan, J.; Tsuchiya, D.; Slaughter, B.; Rohner, N.

10.1101/647255 — immunology — Posted on 2019-05-23

996 Label-free single-cell microfluidics reveals antibiotic transport kinetics in Gram-negative bacteria

Cama, J.; Voliotis, M.; Metz, J.; Smith, A.; Iannucci, J.; Keyser, U. F.; Tsaneva-Atanasova, K.; Pagliara, S.

10.1101/645507 — biophysics — Posted on 2019-05-23

997 Identification of a Nidovirales Orf1a N7-guanine cap methyltransferase signature-sequence as a genetic marker of large RNA genome Tobaniviridae

Ferron, F.; Debat, H.; Decroly, E.; Canard, B.

10.1101/639369 — bioinformatics — Posted on 2019-05-23

998 Three-dimensional morphological analysis of the dynamic digestive system in the green brittle star

Wakita, D.; Naniwa, K.; Aonuma, H.

10.1101/640235 — physiology — Posted on 2019-05-23

999 Neural System Identification with Neural Information Flow

Seeliger, K.; Ambrogioni, L.; Gucluturk, Y.; Guclu, U.; van Gerven, M.

10.1101/553255 — neuroscience — Posted on 2019-05-23

1000 All-optical electrophysiology reveals excitation, inhibition, and neuromodulation in cortical layer 1

Fan, L. Z.; Kheifets, S.; Boehm, U. L.; Piatkevich, K. D.; Wu, H.; Parot, V.; Xie, M.; Boyden, E. S.; Takesian, A. E.; Cohen, A. E.

10.1101/614172 — neuroscience — Posted on 2019-05-23

1001 An active inference approach to modeling concept learning

Smith, R.; Schwartenbeck, P.; Parr, T.; Friston, K. J.

10.1101/633677 — neuroscience — Posted on 2019-05-23

1002 In silico characterization of a “universal” Treg signature reveals the pro enkephalin gene as a novel Treg marker

Marodon, G.

10.1101/638072 — immunology — Posted on 2019-05-23

1003 Systematic comparative analysis of single cell RNA-sequencing methods

Ding, J.; Adiconis, X.; Simmons, S. K.; Kowalczyk, M. S.; Hession, C. C.; Marjanovic, N. D.; Hughes, T. K.; Wadsworth, M. H.; Burks, T.; Nguyen, L. T.; Kwon, J. Y. H.; Barak, B.; Ge, W.; Kedaigle, A. J.; Carroll, S.; Li, S.; Hacohen, N.; Rozenblatt-Rosen, O.; Shalek, A. K.; Villani, A.-C.; Regev, A.; Levin, J. Z.

10.1101/632216 — genomics — Posted on 2019-05-23

1004 Environmental variation mediates the evolution of anticipatory parental effects

Lind, M. I.; Zwoinska, M. K.; Andersson, J.; Carlsson, H.; Krieg, T.; Larva, T.; Maklakov, A. A.

10.1101/606103 — evolutionary biology — Posted on 2019-05-23

1005 ENDOSOMAL MEMBRANE TENSION REGULATES ESCRT-III-DEPENDENT INTRA-LUMENAL VESICLE FORMATION

Mercier, V.; Larios, J.; Molinard, G.; Goujon, A.; Matile, S.; Gruenberg, J.; Roux, A.

10.1101/550483 — cell biology — Posted on 2019-05-23

1006 Glycolysis upregulation is neuroprotective as a compensatory mechanism in ALS

Manzo, E.; Lorenzini, I.; Barrameda, D.; O'Conner, A. G.; Barrows, J. M.; Starr, A.; Kovalik, T.; Rabichow, B. E.; Lehmkuhl, E. M.; Shreiner, D. D.; Joardar, A.; Lievens, J.-C.; Bowser, R.; Sattler, R.; Zarnescu, D.

10.1101/517649 — neuroscience — Posted on 2019-05-23

1007 Cytosolic ROS production by NADPH oxidase 2 regulates muscle glucose uptake during exercise

Henriquez-Olguin, C.; Knudsen, J. R.; Raun, S. H.; Li, Z.; Dalbram, E.; Treebak, J. T.; Sylow, L.; Holmdahl, R.; Richter, E. A.; Jaimovich, E.; Jensen, T. E.

10.1101/522805 — physiology — Posted on 2019-05-23

1008 Cancer/Testis Antigens Differentially Expressed In Indolent And Aggressive Prostate Cancer: Potential New Biomarkers And Targets For Immunotherapies

Kagohara, L.; Carleton, N. M.; Takahashi, S.; Shiraishi, T.; Mooney, S. M.; Vessella, R. L.; Getzenberg, R. H.; Kulkarni, P.; Veltri, R. W.

10.1101/646869 — cancer biology — Posted on 2019-05-23

1009 Combining statistical and mechanistic models to unravel the drivers of mortality within a rear-edge beech population

Petit, C.; Davi, H.; Lefevre, F.; Garrigue, J.; Magdalou, J.-A.; Hurson, C.; Magnanou, E.; Muratorio, S.

10.1101/645747 — ecology — Posted on 2019-05-23

1010 Circulating bacterial DNA as a tool towards non-invasive biomarkers for colorectal cancer and adenoma

Xiao, Q.; Lu, W.; Kong, X.; Shao, Y. W.; Hu, Y.; Wang, A.; Bao, H.; Liu, K.; Wang, X.; Wu, X.; Zheng, S.; Yuan, Y.; Ding, K.

10.1101/647644 — cancer biology — Posted on 2019-05-23

1011 A universal method for gene expression engineering

Lale, R.; Tietze, L.; Nesje, J.; Onsager, I.; Engelhardt, K.; Wong, C. F. A.; Akan, M.; Hummel, N.; Kalinowski, J.; Rueckert, C.; Hohmann-Marriott, M. F.

10.1101/644989 — bioengineering — Posted on 2019-05-23

1012 AEGIS: An In Silico Tool to Model Genome Evolution in Age-Structured Populations

Bradshaw, W. J.; Sajina, A.; Valenzano, D. R.

10.1101/646877 — evolutionary biology — Posted on 2019-05-23

1013 Parental care shapes evolution of aposematism and provides lifelong protection against predators

Lindstedt, C.; Boncoraglio, G.; Cotter, S.; Gilbert, J.; Kilner, R.

10.1101/644864 — evolutionary biology — Posted on 2019-05-23

1014 Robust and window-insensitive mixture model approaches for localizing balancing selection

Cheng, X.; DeGiorgio, M.

10.1101/645887 — evolutionary biology — Posted on 2019-05-23

1015 Image-based consensus molecular subtype classification (imCMS) of colorectal cancer using deep learning

Sirinukunwattana, K.; Domingo, E.; Richman, S.; Redmond, K. L.; Blake, A.; Verrill, C.; Leedham, S. J.; Chatzipli, A.; Hardy, C.; Whalley, C.; Wu, C.-H.; Beggs, A. D.; McDermott, U.; Dunne, P.; Meade, A. A.; Walker, S. M.; Murray, G. I.; Samuel, L. M.; Seymour, M.; Tomlinson, I.; Quirke, P.; Maughan, T.; Rittscher, J.; Koelzer, V.

10.1101/645143 — cancer biology — Posted on 2019-05-23

1016 Novel Rhabdovirus and an almost complete drain fly transcriptome recovered from two independent contaminations of clinical samples.

Brito, F.; Manni, M.; Laubscher, F.; Schibler, M.; Hartley, M.-A.; Keitel, K.; Mlaganile, T.; d'Acremont, V.; Cordey, S.; Kaiser, L.; Zdobnov, E. M.

10.1101/645325 — bioinformatics — Posted on 2019-05-23

1017 Can education be personalised using pupils’ genetic data?

Morris, T. T.; Davies, N. M.; Davey Smith, G.

10.1101/645218 — genetics — Posted on 2019-05-23

1018 Biological Aging in Childhood and Adolescence Following Experiences of Threat and Deprivation: A Systematic Review and Meta-Analysis

Colich, N. L.; Rosen, M. L.; Williams, E. S.; McLaughlin, K. A.

10.1101/642405 — neuroscience — Posted on 2019-05-23

1019 The Effect of Aging, Parkinson’s Disease, and Exogenous Dopamine on the Neural Response Associated with Auditory Regularity Processing

Al Jaja, A.; Grahn, J. A.; Herrmann, B.; MacDonald, P. A.

10.1101/647628 — neuroscience — Posted on 2019-05-23

1020 Accelerating iterative deconvolution and multiview fusion by orders of magnitude

Guo, M.; Li, Y.; Su, Y.; Lambert, T.; Nogare, D. D.; Moyle, M. W.; Duncan, L. H.; Ikegami, R.; Santella, A.; Rey-Suarez, I.; Green, D.; Chen, J.; Vishwasrao, H.; Ganesan, S.; Waters, J. C.; Annunziata, C. M.; Hafner, M.; Mohler, W. A.; Chitnis, A. B.; Upadhyaya, A.; Usdin, T. B.; Bao, Z.; Colon-Ramos, D.; Riviere, P. L.; Liu, H.; Wu, Y.; Shroff, H.

10.1101/647370 — bioengineering — Posted on 2019-05-23

1021 A high-throughput fluorescence-based assay for rapid identification of petroleum degrading bacteria

French, K. E.; Terry, N.

10.1101/498345 — microbiology — Posted on 2019-05-23

1022 Single cell analysis reveals modified hematopoietic cell composition affecting inflammatory and immunopathological responses in Astyanax mexicanus

Peuss, R.; Box, A. C.; Wang, Y.; Chen, S.; Krishnan, J.; Tsuchiya, D.; Slaughter, B.; Rohner, N.

10.1101/647255 — immunology — Posted on 2019-05-23

1023 Enhancer priming enables fast and sustained transcriptional responses to Notch signaling

Falo-Sanjuan, J.; Lammers, N. C.; Garcia, H. G.; Bray, S.

10.1101/497651 — developmental biology — Posted on 2019-05-23

1024 Precisely control mitochondria with light to manipulate cell fate decision

Ernst, P.; Xu, N.; Qu, J.; Chen, H.; Goldberg, M. S.; Zhang, J.; O'Rourke, B.; Liu, X.; Zhou, L.

10.1101/469668 — biophysics — Posted on 2019-05-23

1025 Loss of the Alzheimer’s-linked bridging integrator 1 (BIN1) protein affects synaptic structure and disrupts tau localisation and release

Glennon, E. B.; Lau, D. H.-W.; Gabriele, R. M. C.; Taylor, M. F.; Troakes, C.; Elliott, C.; Killick, R.; Hanger, D. P.; Perez-Nievas, B. G.; Noble, W.

10.1101/646406 — neuroscience — Posted on 2019-05-23

1026 Automated detection of the HER2 gene amplification status in Fluorescence in situ hybridization images for the diagnostics of cancer tissues

Zakrzewski, F.; de Back, W.; Weigert, M.; Wenke, T.; Zeugner, S.; Mantey, R.; Sperling, C.; Friedrich, K.; Roeder, I.; Aust, D. E.; Baretton, G.; Hoenscheid, P.

10.1101/490052 — pathology — Posted on 2019-05-23

1027 Nuclear lamin B is crucial to the nuclear envelope integrity and extracellular trap release in neutrophils

Li, Y.; Werth, V.; Mall, M.; Liu, M.-L.

10.1101/647529 — immunology — Posted on 2019-05-23

1028 MBOAT7-Driven Phosphatidylinositol Remodeling Promotes the Progression of Clear Cell Renal Cell Carcinoma.

Neumann, C. K. A.; Zhang, R.; Silver, D. J.; Venkaleshwari, V.; Traughber, C. A.; Przybycin, C.; Bayik, D.; Smith, J. D.; Lathia, J. D.; Rini, B. I.; Brown, J. M.

10.1101/648378 — cancer biology — Posted on 2019-05-23

1029 Murine norovirus virulence factor 1 (VF1) protein contributes to viral fitness during persistent infection

Borg, C.; Jahun, A. S.; Thorne, L.; Sorgeloos, F.; Bailey, D.; Goodfellow, I.

10.1101/646281 — microbiology — Posted on 2019-05-23

1030 A novel inhibitor of complement C5 provides structural insights into activation

Reichhardt, M.; Johnson, S.; Jore, M.; Tang, T.; Morgan, T.; Tebka, N.; Popitsch, N.; Deme, J.; Lea, S. M.

10.1101/647354 — immunology — Posted on 2019-05-23

1031 Transcript degradation and codon usage regulate gene expression in a lytic phage

Jack, B. R.; Boutz, D. R.; Paff, M. L.; Smith, B. L.; Wilke, C. O.

10.1101/647024 — systems biology — Posted on 2019-05-23

1032 Seeing versus Knowing: The Temporal Dynamics of Real and Implied Colour Processing in the Human Brain

Teichmann, L.; Grootswagers, T.; Carlson, T.; Rich, A.

10.1101/369926 — neuroscience — Posted on 2019-05-23

1033 Consistency in macroscopic human brain responses to noisy time-varying visual inputs

Kitajo, K.; Sase, T.; Mizuno, Y.; Suetani, H.

10.1101/645499 — neuroscience — Posted on 2019-05-23

1034 Individual Prediction of Psychotherapy Outcome in Posttraumatic Stress Disorder using Neuroimaging Data

Zhutovsky, P.; Thomas, R. M.; Olff, M.; van Rooij, S. J. H.; Kennis, M.; van Wingen, G. A.; Geuze, E.

10.1101/647925 — neuroscience — Posted on 2019-05-23

1035 Perception of rhythmic speech is modulated by focal bilateral tACS

Zoefel, B.; Allard, I.; Anil, M.; Davis, M. H.

10.1101/647982 — neuroscience — Posted on 2019-05-23

1036 DNA-segment-capture model for loop extrusion by structural maintenance of chromosome (SMC) protein complexes

Marko, J. F.; De Los Rios, P.; Barducci, A.; Gruber, S.

10.1101/325373 — biophysics — Posted on 2019-05-23

1037 Root development is maintained by specific bacteria-bacteria interactions within a complex microbiome

Finkel, O. M.; Salas-Gonzalez, I.; Castrillo, G.; Law, T. F.; Conway, J. M.; Jones, C. D.; Dangl, J. L.

10.1101/645655 — microbiology — Posted on 2019-05-23

1038 APEC: An accesson-based method for single-cell chromatin accessibility analysis

Li, B.; Li, Y.; Li, K.; Zhu, L.; Yu, Q.; Fang, J.; Cai, P.; Jiang, C.; Qu, K.

10.1101/646331 — bioinformatics — Posted on 2019-05-23

1039 Polylactic acid, a sustainable, biocompatible, transparent substrate material for Organ-On-Chip and Microfluidic applications

Ongaro, A. E.; Di Giuseppe, D.; Kermanizadeh, A.; Miguelez Crespo, A.; Mancini, V.; Martinelli, E.; Stone, V.; Howarth, N.; La Carrubba, V.; Pensabene, V.; Kersaudy-Kerhoas, M.

10.1101/647347 — bioengineering — Posted on 2019-05-23

1040 BOLD and EEG Signal Variability at Rest Differently Relate to Aging in the Human Brain

Kumral, D.; Sansal, F.; Cesnaite, E.; Mahjoory, K.; Al, E.; Gaebler, M.; Nikulin, V. V.; Villringer, A.

10.1101/646273 — neuroscience — Posted on 2019-05-23

1041 Rapid phenotypic and metabolomic domestication of wild Penicillium molds on cheese

Bodinaku, I.; Shaffer, J.; Connors, A.; Steenwyk, J.; Kastman, E.; Rokas, A.; Robbat, A.; Wolfe, B.

10.1101/647172 — microbiology — Posted on 2019-05-23

1042 The genetic interaction between HIV and the antibody repertoire

Strauli, N.; Fryer, E. K.; Pham, O.; Abdel-Mohsen, M.; Facente, S. N.; Pilcher, C.; Pennings, P.; Pillai, S.; Hernandez, R. D.

10.1101/646968 — evolutionary biology — Posted on 2019-05-23

1043 Risk assessment of Ebola virus disease spreading in Uganda using a multilayer temporal network

Riad, M. M. H.; Sekamatte, M.; Ocom, F.; Makumbi, I.; Scoglio, C. M.

10.1101/645598 — systems biology — Posted on 2019-05-23

1044 PD-1 expression during acute infection is repressed through 1 a LSD1- Blimp-1 axis

Bally, A. P. R.; Neeld, D.; Lu, P.; Majumder, P.; Tang, Y.; Barwick, B.; Wang, Q.; Boss, J.

10.1101/645838 — immunology — Posted on 2019-05-23

1045 Co-Stimulation-Induced AP-1 Activity is Required for Chromatin Opening During T Cell Activation

Yukawa, M.; Jagannathan, S.; Kartashov, A.; Chen, X.; Weirauch, M.; Barski, A.

10.1101/647388 — immunology — Posted on 2019-05-23

1046 Characterization of core bacterial species in the Daphnia magna microbiota using shotgun metagenomics

Cooper, R. O.; Cressler, C. E.

10.1101/645630 — genomics — Posted on 2019-05-23

1047 A Population Genomics Analysis of the Native Irish Galway Sheep Breed

McHugo, G. P.; Browett, S.; Randhawa, I. A. S.; Howard, D. J.; Mullen, M. P.; Richardson, I. W.; Park, S. D. E.; Magee, D. A.; Scraggs, E.; Dover, M.; Correia, C. N.; Hanrahan, J. P.; MacHugh, D. E.

10.1101/645754 — genomics — Posted on 2019-05-23

1048 Evolutionary dynamics of the trypsin superfamily and the origins of novel secretory cell function in the internalized ectoderm of the sea anemone Nematostella vectensis

Babonis, L. S.; Ryan, J. F.; Enjolras, C.; Martindale, M. Q.

10.1101/645952 — evolutionary biology — Posted on 2019-05-23

1049 Agency plans are inadequate to conserve US endangered species under climate change

Delach, A.; Caldas, A.; Edson, K.; Krehbiel, R.; Murray, S.; Theoharides, K.; Vorhees, L.; Malcom, J. W.; Salvo, M.; Miller, J. R. B.

10.1101/647396 — ecology — Posted on 2019-05-23

1050 Measuring mRNA translation in neuronal processes and somata by tRNA-FRET

Koltun, B.; Ironi, S.; Gershoni-Emek, N.; Barrera, I.; Hleihil, M.; Nanguneri, S.; Sasmal, R.; Agasti, S. S.; Nair, D.; Rosenblum, K.

10.1101/646216 — neuroscience — Posted on 2019-05-23

1051 Disease Resistance Genetics and Genomics in Octoploid Strawberry

barbey, C.; Lee, S.; Verma, S.; Bird, K. A.; Yocca, A. E.; Edger, P. P.; Knapp, S. J.; Whitaker, V. M.; Folta, K. M.

10.1101/646000 — genomics — Posted on 2019-05-23

1052 The first functional characterization of ancient interleukin-15-like (IL-15L) reveals shared and distinct functions of the IL-2, -15 and -15L family cytokines

Yamaguchi, T.; Karger, A.; Keller, M.; Wangkahart, E.; Wang, T.; Secombes, C. J.; Kimoto, A.; Furihata, M.; Hashimoto, K.; Fischer, U.; Dijkstra, J. M.

10.1101/644955 — evolutionary biology — Posted on 2019-05-23

1053 Both clinical and environmental Caulobacter species act as opportunistic pathogens

Moore, G. M.; Gitai, Z.

10.1101/645515 — microbiology — Posted on 2019-05-23

1054 Group B meningococcal outer membrane protein vaccine promote potent anti-viral effect

Smith, J.; Smith, W.

10.1101/645457 — pharmacology and toxicology — Posted on 2019-05-23

1055 Separability and Geometry of Object Manifolds in Deep Neural Networks

Cohen, U.; Chung, S.; Lee, D. D.; Sompolinsky, H.

10.1101/644658 — neuroscience — Posted on 2019-05-23

1056 Characterization of three Yarrowia lipolytica strains in respect to different cultivation temperatures and metabolite secretion

Hackenschmidt, S.; Bracharz, F.; Daniel, R.; Thuermer, A.; Bruder, S.; Kabisch, J.

10.1101/645242 — microbiology — Posted on 2019-05-23

1057 Spatiotemporal patterns of urbanization in three Swiss urban agglomerations: insights from landscape metrics, growth modes and fractal analysis

Bosch, M.; Chenal, J.

10.1101/645549 — ecology — Posted on 2019-05-23

1058 A carbohydrate-binding protein, FLOURY ENDOSPERM 6 influences the initiation of A- and B-type starch granules in wheat.

Chia, T.; Chirico, M.; King, R.; Ramirez-Gonzalez, R.; Saccomanno, B.; Seung, D.; Simmonds, J.; Trick, M.; Uauy, C.; Verhoeven, T.; Trafford, K.

10.1101/643759 — plant biology — Posted on 2019-05-23

1059 Intestinal stem cell differentiation is associated with dynamic changes in the chromatin landscape

Raab, J. R.; Wager, K. E.; Morowitz, J. M.; Magness, S. T.; Gracz, A. D.

10.1101/637181 — genomics — Posted on 2019-05-23

1060 TAXONOMIC BIAS AND TRAITS OF THE GLOBAL AMPHIBIAN PET-TRADE

Mohanty, N. P.; Measey, J.

10.1101/645259 — ecology — Posted on 2019-05-23

1061 Monitoring transgenic mosquitoes using wing measurements and I3S Classic.

Vyas-Patel, N.

10.1101/645028 — ecology — Posted on 2019-05-23

1062 Recreational fisheries as a driver of salmonid population conservation

Worthington, T. A.; Worthington, I.; Vaughan, I. P.; Ormerod, S. J.; Durance, I.

10.1101/642660 — ecology — Posted on 2019-05-23

1063 SciBet: An ultra-fast classifier for cell type identification using single cell RNA sequencing data

Li, C.; Liu, B.; Kang, B.; Liu, Z.; Liu, Y.; Ren, X.; Zhang, Z.

10.1101/645358 — bioinformatics — Posted on 2019-05-23

1064 Inhibition of de novo ceramide biosynthesis affects aging phenotype in an in vitro model of neuronal senescence

Granzotto, A.; Bomba, M.; Castelli, V.; Navarra, R.; Massetti, N.; Onofrj, M.; Cicalini, I.; Del Boccio, P.; Cimini, A.; Piomelli, D.; Sensi, S. L.

10.1101/645879 — neuroscience — Posted on 2019-05-23

1065 Combinatorial design of chemical-dependent protein switches for controlling intracellular electron transfer

Wu, B.; Atkinson, J. T.; Kahanda, D.; Bennett, G. N.; Silberg, J. J.

10.1101/645978 — synthetic biology — Posted on 2019-05-23

1066 Does nonlinear neural network dynamics explain human confidence in a sequence of perceptual decisions ?

Berlemont, K.; Martin, J.-R.; Sackur, J.; Nadal, J.-P.

10.1101/648022 — neuroscience — Posted on 2019-05-23

1067 New High Throughput Approaches to Detect Partial-body and Neutron Exposures on an Individual Basis

Shuryak, I.; Turner, H. C.; Perrier, J. R.; Cunha, L.; Pujol Canadell, M.; Durrani, M. H.; Harken, A.; Bertucci, A.; Taveras, M.; Garty, G.; Brenner, D. J.

10.1101/646711 — biophysics — Posted on 2019-05-23

1068 Studying 3D genome evolution using genomic sequence

Mourad, R.

10.1101/646851 — bioinformatics — Posted on 2019-05-23

1069 Glycoproteome Analysis of Human Serum and Brain Tissue

Brown, C. J.; Grassmyer, K. T.; MacDonald, M. L.; Clemmer, D. E.; Trinidad, J. C.

10.1101/647081 — biochemistry — Posted on 2019-05-23

1070 Expression of c-Fos and Arc in hippocampal region CA1 marks neurons that exhibit learning-related activity changes

Mahringer, D.; Petersen, A. V.; Fiser, A.; Okuno, H.; Bito, H.; Perrier, J.-F.; Keller, G. B.

10.1101/644526 — neuroscience — Posted on 2019-05-23

1071 Capping protein insulates Arp2/3-assembled actin patches from formins

Billault-Chaumartin, I.; Martin, S.

10.1101/647198 — cell biology — Posted on 2019-05-23

1072 Bayogenin 3-O-Cellobioside is a novel non-cultivar specific anti-blast metabolite produced in rice in response to Pyricularia oryzae infection

Norvienyeku, J.; Lin, L.; Waheed, A.; Chen, X.; Bao, J.; Shabbir, A.; Lin, L.; Zhong, Z.; Batool, W.; Aliyu, S. R.; Zhou, J.; Lu, G.; Wang, Z.

10.1101/647636 — biochemistry — Posted on 2019-05-23

1073 Altered Hippocampal-Prefrontal Neural Dynamics in Mouse Models of Down Syndrome

Chang, P.; Bush, D.; Schorge, S.; Good, M.; Canonica, T.; Shing, N.; Noy, S.; Wiseman, F. K.; Burgess, N.; Tybulewicz, V. L.; Walker, M. C.; Fisher, E. M.

10.1101/644849 — neuroscience — Posted on 2019-05-23

1074 Unraveling the functional role of the orphan solute carrier, SLC22A24 in the transport of steroid conjugates through metabolomic and genome-wide association studies

Yee, S. W.; Stecula, A.; Chien, H.-C.; Zou, L.; Feofanova, E. V.; van Borselen, M.; Cheung, K. W. K.; Yousri, N. A.; Suhre, K.; Kinchen, J. M.; Boerwinkle, E.; Irannejad, R.; Yu, B.; Giacomini, K. M.

10.1101/648238 — pharmacology and toxicology — Posted on 2019-05-23

1075 Electrostatic interactions at the five-fold axis alter heparin-binding phenotype and drive EV-A71 virulence in mice

Tee, H. K.; Tan, C. W.; Yogarajah, T.; Lee, M. H. P.; Chai, H. J.; Hanapi, N. A.; Yusof, S. R.; Ong, K. C.; Lee, V. S.; Sam, I.-C.; Chan, Y. F.

10.1101/648253 — microbiology — Posted on 2019-05-23

1076 Molecular phylogeny of wood decay fungi of hardwood and their ability to produce laccase that correlates with triphenylmethane dye decolorization

Mahawaththage Dona, M. P. S.; Deraniyagala, A. S.; Wijesinghe, P.; Attanayake, R. N.

10.1101/648147 — microbiology — Posted on 2019-05-23

1077 Comparative Tn-Seq reveals common daptomycin resistance determinants in Staphylococcus aureus despite strain-dependent differences in essentiality of shared cell envelope genes

Coe, K. A.; Lee, W.; Komazin-Meredith, G.; Meredith, T. C.; Grad, Y. H.; Walker, S.

10.1101/648246 — microbiology — Posted on 2019-05-23

1078 Transient crosslinking kinetics optimize gene cluster interactions

Walker, B.; Taylor, D.; Lawrimore, J.; Hult, C.; Adalsteinsson, D.; Bloom, K.; Forest, M. G.

10.1101/648196 — genomics — Posted on 2019-05-23

1079 A conservative approach for species delimitation based on multi-locus DNA sequences: a case study of the genus Giraffa (Mammalia, Cetartiodactyla)

HASSANIN, A.; Petzold, A.

10.1101/648162 — evolutionary biology — Posted on 2019-05-23

1080 Toxic Effects of Crude Extracts from Chinese Herbal Toothpastes on Solenopsis invicta (Hymenoptera: Formicidae)

Xiao, Q.; Hassan, B.; Luo, J.; xu, y.

10.1101/648139 — animal behavior and cognition — Posted on 2019-05-23

1081 The complete mitochondrial genome of Calyptogena marissinica (Heterodonta: Veneroida: Vesicomyidae): insight into the deep-sea adaptive evolution of vesicomyids

Yang, M.; Gong, L.; Sui, J.; Li, X.

10.1101/648121 — molecular biology — Posted on 2019-05-23

1082 Micro- and nanostructural characteristics of rat masseter muscle entheses -Characteristics of masseter muscle entheses-

Matsunaga, S.; Arakawa, K.; Nojima, K.; Nakano, T.; Abe, S.; Yoshinari, M.; Sueishi, K.

10.1101/648105 — biophysics — Posted on 2019-05-23

1083 Apicomplexan F-actin is required for efficient nuclear entry during host cell invasion

Del Rosario, M.; Periz, J.; Pavlou, G.; Lyth, O.; Latorre-Barragan, F.; Das, S.; Pall, G. S.; Stortz, J. F.; Lemgruber, L.; Baum, J.; Tardieux, I.; Meissner, M.

10.1101/646463 — cell biology — Posted on 2019-05-23

1084 Pelvic bone structures in free-ranging Eurasian lynx (Lynx lynx) from Switzerland: a radiological pelvimetry study

Morend, F.; Lang, J.; Vidondo, B.; Ryser-Degiorgis, M.-P.

10.1101/646935 — zoology — Posted on 2019-05-23

1085 Constraints on somite formation in developing embryos

Juul, J. S.; Jensen, M. H.; Krishna, S.

10.1101/645010 — developmental biology — Posted on 2019-05-23

1086 A molecular mechanism for the procentriole recruitment of Ana2

McLamarrah, T. A.; Speed, S. K.; Buster, D. W.; Fagerstrom, C. J.; Galletta, B. J.; Rusan, N. M.; Rogers, G.

10.1101/647149 — cell biology — Posted on 2019-05-23

1087 Detecting and controlling dye effects in single-virus fusion experiments

Rawle, R. J.; Villamil Giraldo, A. M.; Boxer, S. G.; Kasson, P. M.

10.1101/646679 — biophysics — Posted on 2019-05-23

1088 Functionalized microcarriers improve T cell manufacturing by facilitating migratory memory T cell production and increasing CD4/CD8 ratio

Dwarshuis, N. J.; Song, H. W.; Patel, A.; Kotanchek, T.; Roy, K.

10.1101/646760 — bioengineering — Posted on 2019-05-23

1089 Molecular basis for feedback inhibition of Notch signaling by the Notch regulated ankyrin repeat protein NRARP

Jarrett, S. M.; Seegar, T. C. M.; Andrews, M.; Adelmant, G.; Marto, J. A.; Aster, J. C.; Blacklow, S. C.

10.1101/645937 — biochemistry — Posted on 2019-05-23

1090 The neuropeptide Drosulfakinin regulates social isolation-induced aggression in Drosophila

Agrawal, P.; Kao, D.; Chung, P.; Looger, L. L.

10.1101/646232 — neuroscience — Posted on 2019-05-23

1091 β-Actin and Nuclear Myosin I are responsible for nucleolar reorganization during DNA Repair.

Cerutti, E.; Daniel, L.; Donnio, L.-M.; Neuillet, D.; Magnani, C.; Mari, P.-O.; Giglia-Mari, G.

10.1101/646471 — molecular biology — Posted on 2019-05-22

1092 RNF152 Negatively Regulates mTOR Signalling and Blocks Cell Proliferation in the Floor Plate

Kadoya, M.; Sasai, N.

10.1101/646661 — developmental biology — Posted on 2019-05-23

1093 The human UDP-galactose 4’-epimerase (GALE) is required for cell surface glycome structure and function

Broussard, A.; Florwick, A.; Desbiens, C.; Nischan, N.; Robertson, C.; Guan, Z.; Kohler, J. J.; Wells, L.; Boyce, M.

10.1101/646794 — cell biology — Posted on 2019-05-23

1094 Iron-deficiency and estrogen are associated with ischemic stroke by up-regulating transferrin to induce hypercoagulability

Tang, X.; Fang, M.; Cheng, R.; Zhang, Z.; Wang, Y.; Shen, C.; Han, Y.; Lu, Q.; Du, Y.; Liu, Y.; Sun, Z.; Zhu, L.; Mwangi, J.; Xue, M.; Long, C.; Lai, R.

10.1101/646109 — biochemistry — Posted on 2019-05-23

1095 miR-26a regulates extracellular vesicle secretion from prostate cancer cells via targeting SHC4, PFDN4 and CHORDC1

Urabe, F.; Kosaka, N.; Sawa, Y.; Yamamoto, T.; Yamamoto, Y.; Ito, K.; Kimura, T.; Egawa, S.; Ochiya, T.

10.1101/646380 — cancer biology — Posted on 2019-05-23

1096 Nol9 is a Spatial Regulator for the Human ITS2 pre-rRNA Processing Complex

Gordon, J.; Pillon, M.; Stanley, R. E.

10.1101/647073 — molecular biology — Posted on 2019-05-23

1097 Length-dependent disassembly maintains four different flagellar lengths in Giardia

McInally, S. G.; Kondev, J.; Dawson, S. C.

10.1101/647115 — cell biology — Posted on 2019-05-22

1098 Angiogenic activity of cytochalasin B-induced membrane vesicles of human mesenchymal stem cells

Gomzikova, M.; Zhuravleva, M.; Vorobev, V.; Salafutdinov, I.; Laikov, A.; Kletukhina, S.; Martynova, E.; Tazetdinova, L.; Ntekim, A.; Khaiboullina, S.; Rizvanov, A.

10.1101/646398 — cell biology — Posted on 2019-05-22

1099 Structural characterization of tau in fuzzy tau:tubulin complexes

Fung, H. Y. J.; Gupta, K.; Rhoades, E.

10.1101/647016 — biophysics — Posted on 2019-05-22

1100 Two-color nanoscopy of organelles for extended times with HIDE probes

Chu, L.; Tyson, J.; Shaw, J. E.; Rivera-Molina, F.; Koleske, A. J.; Schepartz, A.; Toomre, D.

10.1101/647065 — biophysics — Posted on 2019-05-22

1101 DHTKD1 and OGDH display in vivo substrate overlap and form a hybrid ketoacid dehydrogenase complex

Leandro, J.; Dodatko, T.; Aten, J.; Hendrickson, R. C.; Sanchez, R.; Yu, C.; DeVita, R. J.; Houten, S. M.

10.1101/645689 — biochemistry — Posted on 2019-05-22

1102 Motility of Enzyme-Powered Vesicles

Ghosh, S.; Mohajerani, F.; Son, S.; Velegol, D.; Butler, P. J.; Sen, A.

10.1101/645986 — biochemistry — Posted on 2019-05-22

1103 Novel Strategies for Glutamate Clearance in the Glia-Deprived Synaptic Hub of C. elegans

Chan, J.; Lee, K. K.; Wong, J. C. Y.; Morocho, P.; Mano, I.

10.1101/645812 — neuroscience — Posted on 2019-05-22

1104 Primordial Blasts, a population of blood borne stem cells responsible for whole body regeneration in a basal chordate

Kassmer, S. H.; Langenbacher, A. D.; De Tomaso, A. W.

10.1101/647578 — developmental biology — Posted on 2019-05-22

1105 Cytogenetically-based biodosimetry after high doses of radiation

Pujol Canadell, M.; Perrier, J. R.; Cunha, L.; Shuryak, I.; Harken, A.; Garty, G.; Brenner, D.

10.1101/647362 — cell biology — Posted on 2019-05-22

1106 The kynurenine pathway is essential for rhodoquinone biosynthesis in Caenorhabditis elegans

Roberts Buceta, P. M.; Romanelli-Cedrez, L.; Babcock, S. J.; Xun, H.; VonPaige, M. L.; Higley, T. W.; Schlatter, T. D.; Davis, D. C.; Drexelius, J. A.; Culver, J. C.; Carrera, I.; Shepherd, J. N.; Salinas, G.

10.1101/645929 — biochemistry — Posted on 2019-05-22

1107 The Contribution of Parietal Cortex to Visual Salience

Chen, X.; Zirnsak, M.; Vega, G. M.; Govil, E.; Lomber, S.; Moore, T.

10.1101/619643 — neuroscience — Posted on 2019-05-22

1108 A cytomegalovirus immunevasin triggers integrated stress response-dependent reorganization of the endoplasmic reticulum.

Zhang, H.; Read, C.; Nguyen, C. C.; Siddiquey, M. N. A.; Shang, C.; Hall, C. M.; von Einem, J.; Kamil, J. P.

10.1101/641068 — microbiology — Posted on 2019-05-22

1109 Inhibition of ADORA1 attenuates hepatic steatosis by gut microbiota-derived acetic acid from Astragalus polysaccharides

Hong, Y.; Zheng, N.; He, X.; Zhong, J.; Ma, J.; Zhao, A.; Zheng, X.; Gu, Y.; Yao, J.; Li, Y.; Yuan, L.; Lin, M.; Lu, X.; Ping, J.; Song, P.; Li, B.; Han, R.; Sheng, L.; Zhang, W.; Ding, K.; Liu, J.; Jia, W.; Li, H.

10.1101/639195 — physiology — Posted on 2019-05-22

1110 Directional stepping model for yeast dynein: Longitudinal- and side- step distributions

Fayer, I.; Granek, R.

10.1101/645796 — biophysics — Posted on 2019-05-22

1111 Allelic polymorphism shapes collective phenotypes in evolving Pseudomonas aeruginosa populations

Azimi, S.; Roberts, A. E.; Peng, S.; Weitz, J. S.; McNally, A.; Brown, S. P.; Diggle, S. P.

10.1101/644724 — microbiology — Posted on 2019-05-22

1112 Mutators drive evolution of multi-resistance to antibiotics

Gifford, D. R.; Berrios-Caro, E.; Joerres, C.; Galla, T.; Knight, C. G.

10.1101/643585 — evolutionary biology — Posted on 2019-05-22

1113 Fast and accurate shared segment detection and relatedness estimation in un-phased genetic data using TRUFFLE

Dimitromanolakis, A.; Paterson, A.; Sun, L.

10.1101/460915 — genomics — Posted on 2019-05-22

1114 A genomic approach to inferring kinship reveals limited intergenerational dispersal in the yellow fever mosquito

Jasper, M.; Schmidt, T.; Ahmad, N.; Sinkins, S.; Hoffmann, A.

10.1101/636456 — ecology — Posted on 2019-05-22

1115 Malaria.tools: comparative genomic and transcriptomic database for Plasmodium species

Tan, Q. W.; Mutwil, M.

10.1101/639179 — bioinformatics — Posted on 2019-05-22

1116 DYRK1A up-regulation specifically impairs a presynaptic form of long-term potentiation

Lepagnol-Bestel, A.-M.; Haziza, S.; Viard, J.; Salin, P. A.; Crepel, V.; Duchon, A.; Herault, Y.; Simonneau, M.

10.1101/645200 — neuroscience — Posted on 2019-05-22

1117 Preserved wake-dependent cortical excitability dynamics predict cognitive fitness beyond age-related brain alterations

Van Egroo, M.; Narbutas, J.; Chylinski, D.; Villar Gonzalez, P.; Ghaemmaghami, P.; Muto, V.; Schmidt, C.; Gaggioni, G.; Besson, G.; Pepin, X.; Tezel, E.; Marzoli, D.; Le Goff, C.; Cavalier, E.; Luxen, A.; Salmon, E.; Maquet, P.; Bahri, M. A.; Phillips, C.; Bastin, C.; Collette, F.; Vandewalle, G.

10.1101/644096 — neuroscience — Posted on 2019-05-22

1118 Cross-species cortical alignment identifies different types of neuroanatomical reorganization in higher primates

Eichert, N.; Robinson, E. C.; Bryant, K. L.; Jbabdi, S.; Jenkinson, M.; Li, L.; Krug, K.; Watkins, K. E.; Mars, R. B.

10.1101/645234 — neuroscience — Posted on 2019-05-22

1119 Insulin-like growth factor 1 is related to the expression of plumage traits in a passerine species

Mahr, K.; Vincze, O.; Toth, Z.; Hoi, H.; Lendvai, A. Z. Z.

10.1101/645226 — evolutionary biology — Posted on 2019-05-22

1120 Anaesthesia with diethyl ether impairs jasmonate signalling in the carnivorous plant Venus flytrap (Dionaea muscipula).

Pavlovic, A.; Libiakova, M.; Bokor, B.; Jaksova, J.; Petrik, I.; Novak, O.; Baluska, F.

10.1101/645150 — plant biology — Posted on 2019-05-22

1121 The structure of the population code in neural ensembles of V4 shapes pair-wise interactions on different time scales.

Koren, V.; Andrei, A. R.; Hu, M.; Dragoi, V.; Obermayer, K.

10.1101/645135 — neuroscience — Posted on 2019-05-22

1122 Whole genome sequencing of dog specific assemblages C and D of Giardia duodenalis from single and pooled cysts indicates host associated genes

Kooyman, F.; Wagenaar, J.; Zomer, A.

10.1101/645119 — molecular biology — Posted on 2019-05-22

1123 PICKLE recruits RETINOBLASTOMA RELATED 1 to Control Lateral Root Formation in Arabidopsis

Ötvös, K.; MIskolczi, P.; Marhavy, P.; Cruz-Ramirez, A.; Benkova, E.; Robert, S.; Bako, L.

10.1101/643122 — plant biology — Posted on 2019-05-22

1124 Computational dissociation of dopaminergic and cholinergic effects on voluntary behavior and inhibitory control

Aponte, E. A.; Schoebi, D.; Stephan, K. E.; Heinzle, J.

10.1101/645093 — pharmacology and toxicology — Posted on 2019-05-22

1125 An oscillator ensemble model of sequence learning

Maye, A.; Wang, P.; Daume, J.; Hu, X.; Engel, A. K.

10.1101/645085 — neuroscience — Posted on 2019-05-22

1126 An optimised protocol for isolation of RNA through laser capture microdissection of leaf material

Hua, L.; Hibberd, J. M.

10.1101/644997 — plant biology — Posted on 2019-05-22

1127 GRANAR, a new computational tool to better understand the functional importance of root anatomy

Heymans, A.; Couvreur, V.; LaRue, T.; Paez Garcia, A.; Lobet, G.

10.1101/645036 — plant biology — Posted on 2019-05-22

1128 Levels of Representation in a Deep Learning Model of Categorization

Guest, O.; Love, B. C.

10.1101/626374 — neuroscience — Posted on 2019-05-22

1129 Lighter compared to deeper isoflurane anaesthesia can affect recognition memory in male C57BL/6 mice

Ferreira, J. M.; Valentim, A. M.

10.1101/645051 — animal behavior and cognition — Posted on 2019-05-22

1130 TRESK background K+ channel deletion selectively uncovers enhanced mechanical and cold sensitivity

Castellanos, A.; Pujol-Coma, A.; Andres-Bilbe, A.; Negm, A.; Callejo, G.; Soto, D.; Noël, J.; Comes, N.; Gasull, X.

10.1101/636829 — neuroscience — Posted on 2019-05-22

1131 Land Use Change Increases Wildlife Parasite Diversity in Anamalai Hills, Western Ghats, India

Chakraborty, D.; Reddy, D. M.; Tiwari, S.; Umapathy, G.

10.1101/645044 — ecology — Posted on 2019-05-22

1132 Increased expression of MCPIP1 in HIV-1 controllers is correlated with overexpression of p21

de Azevedo, S. S. D.; Ribeiro-Alves, M.; Cortes, F. H.; Delatorre, E.; Hoagland, B.; Grinsztejn, B.; Veloso, V. G.; Morgado, M. G.; Souza, T. M. L.; Bello, G.

10.1101/611871 — immunology — Posted on 2019-05-22

1133 Elaborate expansion of syntenic V1R hotspots correlates with high species diversity in nocturnal mouse and dwarf lemurs

Hunnicutt, K. E.; Tiley, G. P.; Williams, R. C.; Larsen, P. A.; Blanco, M. B.; Rasoloarison, R. M.; Campbell, C. R.; Zhu, K.; Weisrock, D. W.; Matsunami, H.; Yoder, A. D.

10.1101/637348 — genomics — Posted on 2019-05-22

1134 Introgressive and horizontal acquisition of Wolbachia by Drosophila yakuba-clade hosts and horizontal transfer of incompatibility loci between distantly related Wolbachia

Cooper, B. S.; Vanderpool, D.; Conner, W. R.; Matute, D. R.; Turelli, M.

10.1101/551036 — evolutionary biology — Posted on 2019-05-22

1135 Convolutional Neural Networks Improve the Prediction of Hand Movement Speed and Force from Single-trial EEG

Gatti, R. H.; Atum, Y. V.; Jochumsen, M.; Biurrun Manresa, J. A.

10.1101/492660 — bioengineering — Posted on 2019-05-22

1136 Inhibition of nucleotide synthesis promotes replicative senescence of human mammary epithelial cells

Delfarah, A.; Parrish, S.; Junge, J. A.; Yang, J.; Seo, F.; Li, S.; Wang, P.; Fraser, S. E.; Graham, N.

10.1101/423665 — systems biology — Posted on 2019-05-22

1137 Unveiling two new trichome-specific promoters of interest for metabolic engineering in Nicotiana tabacum

Pottier, M.; Laterre, R.; Van Wessem, A.; M. Ramirez, A.; Herman, X.; Boutry, M.; Hachez, C.

10.1101/620021 — plant biology — Posted on 2019-05-22

1138 easyCLIP Quantifies RNA-Protein Interactions and Characterizes Recurrent PCBP1 Mutations in Cancer

Porter, D. F.; Khavari, P. A.

10.1101/635888 — molecular biology — Posted on 2019-05-22

1139 Sphingomyelin biosynthesis is critical in organizing phosphoinositide turnover during phagocytic uptake of Mycobacterium tuberculosis

Niekamp, P.; Guzman, G.; Leier, H.; Rashidfarrokhi, A.; Richina, V.; Pott, F.; Holthuis, J.; Tafesse, F. G.

10.1101/565226 — microbiology — Posted on 2019-05-22

1140 Dynamic vessel adaptation in synthetic arteriovenous networks

Fredrich, T.; Welter, M.; Rieger, H.

10.1101/429027 — biophysics — Posted on 2019-05-22

1141 Longitudinal increases in structural connectome segregation and functional connectome integration are associated with better recovery after mild TBI

Kuceyeski, A.; Jamison, K. W.; Owen, J.; Raj, A.; Mukherjee, P.

10.1101/320515 — neuroscience — Posted on 2019-05-22

1142 New modular assays for the quantitative study of skylight navigation in flying flies

Mathejczyk, T. F.; Wernet, M. F.

10.1101/527945 — neuroscience — Posted on 2019-05-22

1143 The model of local axon homeostasis - explaining the role and regulation of microtubule bundles in axon maintenance and pathology

Hahn, I.; Voelzmann, A.; Liew, Y.-T.; Costa-Gomes, B.; Prokop, A.

10.1101/577320 — cell biology — Posted on 2019-05-22

1144 Linked-read sequencing of gametes allows efficient genome-wide analysis of meiotic recombination

Sun, H.; Rowan, B. A.; Flood, P. J.; Brandt, R.; Fuss, J.; Hancock, A. M.; Michelmore, R. W.; Huettel, B.; Schneeberger, K.

10.1101/484022 — bioinformatics — Posted on 2019-05-22

1145 Stability of Thin-Film Metallization in Flexible Stimulation Electrodes: Analysis and Improvement of in vivo Performance

Cvancara, P.; Boretius, T.; Lopez-Alvarez, V. M.; Maciejasz, P.; Andreu, D.; Raspopovic, S.; Petrini, F.; Micera, S.; Granata, G.; Fernandez, E.; Rossini, P. M.; Yoshida, K.; Jensen, W.; Divoux, J.-L.; Guiraud, D.; Navarro, X.; Stieglitz, T.

10.1101/644914 — bioengineering — Posted on 2019-05-22

1146 Learning of distant state predictions by the orbitofrontal cortex in humans

Wimmer, G. E.; Buechel, C.

10.1101/450999 — neuroscience — Posted on 2019-05-22

1147 A non-spatial account of place and grid cells based on clustering models of concept learning

Mok, R. M.; Love, B. C.

10.1101/421842 — neuroscience — Posted on 2019-05-22

1148 The niche is not the range: Dispersal and persistence shape mismatches between ecological niches and geographic distributions of plants

Pagel, J.; Treurnicht, M.; Bond, W. J.; Kraaij, T.; Nottebrock, H.; Schutte-Vlok, A.; Tonnabel, J.; Esler, K. J.; Schurr, F. M.

10.1101/526251 — ecology — Posted on 2019-05-22

1149 Read-SpaM: assembly-free and alignment-free comparison of bacterial genomes with low sequencing coverage

Lau, A. K.; Leimeister, C.-A.; Dörrer, S.; Bleidorn, C.; Morgenstern, B.

10.1101/550632 — bioinformatics — Posted on 2019-05-22

1150 ERASE: Extended Randomization for assessment of annotation enrichment in ASE datasets

D'Sa, K.; Reynolds, R. H.; Guelfi, S.; Zhang, D.; Ruiz, S. G.; International Parkinson's Disease Genomics Consort, ; System Genomics of Parkinson's Disease (SGPD), ; Hardy, J.; Gagliano Taliun, S. A.; Small, K. S.; Ryten, M.; Botia, J. A.

10.1101/600411 — bioinformatics — Posted on 2019-05-22

1151 Assessment of knee pain from MRI scans using a convolutional Siamese network

Chang, G. H.; Felson, D. T.; Qiu, S.; Guermazi, A.; Capellini, T. D.; Kolachalama, V. B.

10.1101/463497 — bioengineering — Posted on 2019-05-22

1152 Aversive learning strengthens episodic memory in both adolescents and adults

Cohen, A. O.; Matese, N. G.; Filimontseva, A.; Shen, X.; Shi, T. C.; Livne, E.; Hartley, C. A.

10.1101/547331 — animal behavior and cognition — Posted on 2019-05-22

1153 STDP forms associations between memory traces in networks of spiking neurons

Pokorny, C.; Ison, M. J.; Rao, A.; Legenstein, R.; Papadimitriou, C.; Maass, W.

10.1101/188938 — neuroscience — Posted on 2019-05-22

1154 Abundance and diversity of resistomes differ between healthy human oral cavities and gut

Carr, V. R.; Witherden, E.; Lee, S.; Shoaie, S.; Mullany, P.; Proctor, G. B.; Gomez-Cabrero, D.; Moyes, D. L.

10.1101/644922 — microbiology — Posted on 2019-05-22

1155 The loci of behavioral evolution: evidence that Fas2 and tilB underlie differences in pupation site choice behavior between Drosophila melanogaster and D. simulans

Pischedda, A.; Shahandeh, M. P.; Turner, T. L.

10.1101/494013 — genetics — Posted on 2019-05-22

1156 In Silico Benchmarking of Metagenomic Tools for Coding Sequence Detection Reveals the Limits of Sensitivity and Precision

Golob, J. L.; Minot, S. S.

10.1101/295352 — bioinformatics — Posted on 2019-05-22

1157 Harnessing Avidity: Quantifying Entropic and Energetic Effects of Linker Length and Rigidity Required for Multivalent Binding of Antibodies to HIV-1 Spikes

Einav, T.; Yazdi, S.; Coey, A.; Bjorkman, P. J.; Phillips, R.

10.1101/406454 — immunology — Posted on 2019-05-22

1158 Widespread selection and gene flow shape the genomic landscape during a radiation of monkeyflowers

Stankowski, S.; Chase, M. A.; Fuiten, A. M.; Rodrigues, M. F.; Ralph, P. L.; Streisfeld, M. A.

10.1101/342352 — evolutionary biology — Posted on 2019-05-22

1159 Nup93 modulates spatiotemporal dynamics and function of the HOXA gene cluster during differentiation

Labade, A. S.; Salvi, A.; Karmodiya, K.; Sengupta, K.

10.1101/646224 — molecular biology — Posted on 2019-05-22

1160 PUMILIO, but not RBMX, binding is required for regulation of genomic stability by noncoding RNA NORAD

Elguindy, M. M.; Kopp, F.; Goodarzi, M.; Rehfeld, F.; Thomas, A.; Chang, T.-C.; Mendell, J. T.

10.1101/645960 — molecular biology — Posted on 2019-05-22

1161 A rectal cancer model establishes a platform to study individual responses to chemoradiation

Ganesh, K.; Wu, C.; O'Rourke, K. P.; Adileh, M.; Szeglin, B. C.; Wasserman, I.; Marco, M. R.; Shady, M.; Zheng, Y.; Karthaus, W. R.; Won, H. H.; Choi, S.-H.; Pelossof, R. A.; Barlas, A.; Pappou, E.; Elghouayel, A.; Strong, J. S.; Chen, C.-T.; Harris, J. W.; Weiser, M. R.; Nash, G. M.; Guillem, J. G.; Wei, I. H.; Cercek, A.; Kolesnick, R. N.; Manova-Todorova, K. O.; Saltz, L. B.; DeMatteo, R. P.; Massague, J.; Romesser, P. B.; Paty, P. B.; Yaeger, R. D.; Clevers, H.; Berger, M. F.; Shia, J.; Lowe, S. W.; Dow, L. E.; Garcia-Aguilar, J.; Sawyers, C. L.; Smith, J. J.

10.1101/640193 — cancer biology — Posted on 2019-05-22

1162 Regulation of KRAS4A/B splicing in cancer stem cells by the RBM39 splicing complex.

Chen, W.-C.; To, M. D.; Westcott, P. M. K.; Delrosario, R.; Kim, I.-J.; Phillips, M.; Tran, Q.; Bayani, N.; Balmain, A.

10.1101/646125 — cancer biology — Posted on 2019-05-22

1163 Cooperating lineage factors SOX2 and BRN2 govern the transcriptional program of the neural subtype of lung squamous cell carcinoma

Sato, T.; Yoo, S.; Kong, R.; Fridrikh, M.; Sinha, A.; Chandramani-Shivalingappa, P.; Patel, A.; Nagano, O.; Masuko, T.; Beasley, M. B.; Powell, C. A.; Zhu, J.; Watanabe, H.

10.1101/646034 — cancer biology — Posted on 2019-05-22

1164 Chromatin-enriched RNAs mark active and repressive cis-regulation: an analysis of nuclear RNA-seq

Sun, X.; Wang, Z.; Perez-Cervantes, C. H.; Ruthenburg, A.; Moskowitz, I. H.; Gribskov, M.; Yang, X.

10.1101/646950 — genomics — Posted on 2019-05-22

1165 Latent-space embedding of expression data identifies gene signatures from sputum samples of asthmatic patients

Lou, S.; Li, T.; spakowicz, D.; Chupp, G. L.; Gerstein, M. B.

10.1101/646976 — bioinformatics — Posted on 2019-05-22

1166 The Synchytrium endobioticum AvrSen1 triggers a Hypersensitive Response in Sen1 potatoes while natural variants evade detection

Vossenberg, B. v. d.; Prodhomme, C.; Arkel, G. v.; Gent, M. v.; Bergervoet, M.; Brankovics, B.; Przetakiewicz, J.; Visser, R.; Lee, T. v. d.; Vossen, J.

10.1101/646984 — plant biology — Posted on 2019-05-22

1167 Mastitis risk effect on the economic consequences of paratuberculosis control in dairy cattle: A stochastic modeling study

Verteramo Chiu, L. J.; Tauer, L. W.; Grohn, Y. T.; Smith, R. L.

10.1101/646893 — epidemiology — Posted on 2019-05-22

1168 Predicting failures of Molteno and Baerveldt glaucoma drainage devices using machine learning models

Rahmani, B.; Morrison, P.; Dixon, M.; Sheybani, A.

10.1101/646885 — bioinformatics — Posted on 2019-05-22

1169 Intrinsically disordered proteins and structured proteins with intrinsically disordered regions have different functional roles in the cell

Giansanti, A.; Deiana, A.; Forcelloni, S.; Porrello, A.

10.1101/646901 — bioinformatics — Posted on 2019-05-22

1170 Diaphragmatic Central Motor Conduction Changes In Chronic Obstructive Pulmonary Disease

elnemr, r.; Shafiek, H.; Sweed, R.

10.1101/646836 — physiology — Posted on 2019-05-22

1171 High resolution nonlinear registration with simultaneous modelling of intensities

Andersson, J. L. R.; Smith, S. M.; Jenkinson, M.

10.1101/646802 — neuroscience — Posted on 2019-05-22

1172 GLUT4 expression and glucose transport in human induced pluripotent stem cell-derived cardiomyocytes

Bowman, P. R. T.; Smith, G. L.; Gould, G. W.

10.1101/646828 — biochemistry — Posted on 2019-05-22

1173 Linking nutrient stoichiometry to Zika virus transmission in a mosquito

Paige, A. S.; Bellamy, S. K.; Alto, B. W.; Dean, C. L.; Yee, D. A.

10.1101/645911 — ecology — Posted on 2019-05-22

1174 Label-free single-cell microfluidics reveals antibiotic transport kinetics in Gram-negative bacteria

Cama, J.; Voliotis, M.; Metz, J.; Smith, A.; Ianucci, J.; Keyser, U. F.; Tsaneva-Atanasova, K.; Pagliara, S.

10.1101/645507 — biophysics — Posted on 2019-05-22

1175 Oncogenic and Circadian Effects of Small Molecules Directly and Indirectly Targeting the Core Circadian Clock

Lin, H.-H.; Robertson, K.; Bisbee, H.; Farkas, M.

10.1101/645861 — biochemistry — Posted on 2019-05-22

1176 Gas-chromatography coupled mass spectrometry for rapid and sensitive quantitation of glucose and glucose phosphates derived from glycogen

Young, L. E.; Brizzee, C. O.; Macedo, J. K. A.; Gentry, M. S.; Sun, R. C.

10.1101/645556 — biochemistry — Posted on 2019-05-22

1177 Quantitative studies of an RNA duplex electrostatics by ion counting

Gebala, M.; Herschlag, D.

10.1101/645697 — biophysics — Posted on 2019-05-22

1178 Cataract-associated deamidations on the surface of γS-crystallin increase protein unfolding and flexibility at distant regions

Forsythe, H. M.; Vetter, C. J.; Jara, K. J.; Reardon, P. N.; David, L. L.; Barbar, E. J.; Lampi, K.

10.1101/646083 — biophysics — Posted on 2019-05-22

1179 Mitochondrial dynamics quantitatively revealed by STED nanoscopy with an enhanced squaraine variant probe

Yang, X.; Yang, Z.; He, Y.; Shan, C.; Yan, W.; Wu, Z.; Chai, P.; Teng, J.; Qu, J.; Xi, P.

10.1101/646117 — biophysics — Posted on 2019-05-22

1180 Identification of key regulators in Prostate cancer from gene expression datasets of patients

Mangangcha, I. R.; Malik, M. Z.; Kücük, O.; Ali, S.; Singh, R. K. B.

10.1101/643643 — systems biology — Posted on 2019-05-22

1181 Ultrastructural heterogeneity of human layer 4 excitatory synaptic boutons in the adult temporal lobe neocortex

Yakoubi, R.; Rollenhagen, A.; von Lehe, M.; Miller, D.; Walkenfort, B.; Hasenberg, M.; Saetzler, K.; Lübke, J.

10.1101/643924 — neuroscience — Posted on 2019-05-22

1182 Functional genomics reveals extensive diversity in Staphylococcus epidermidis restriction modification systems compared to Staphylococcus aureus.

Lee, J. Y.; Carter, G. P.; Pidot, S. J.; Guerillot, R.; Seeman, T.; Goncalves da Silva, A.; Foster, T. J.; Howden, B. P.; Stinear, T. P.; Monk, I. R.

10.1101/644856 — microbiology — Posted on 2019-05-22

1183 Enhanced Killing of Triple-Negative Breast Cancer Cells by Reassortant Reovirus and Topoisomerase Inhibitors

Rodriguez Stewart, R. M.; Berry, J. T. L.; Berger, A. K.; Yoon, S. B.; Guberman, J. A.; Patel, N. B.; Tharp, G. K.; Bosinger, S. E.; Mainou, B. A.

10.1101/644815 — microbiology — Posted on 2019-05-22

1184 Genomic Surveillance of Yellow Fever Virus Epidemic Waves in Sao Paulo, Brazil, 2017 - 2018

de Souza, R. P.; Hill, S. C.; Theze, J.; Claro, I.; Aguiar, R. S.; Dellicour, S.; Abade, L.; Santos, F. C. P.; Cunha, M. S.; Nogueira, J. S.; Salles, F. F. C.; Rocco, I. M.; Maeda, A. Y.; Vasami, F. G. S.; Plessis, L. d.; Silveira, P. P.; Giovanetti, M.; de Jesus, J. G.; Quick, J.; Fernandes, N. C. C. A.; Guerra, J. M.; Ressio, R. A.; Cirqueira, C. S.; Iglezias, S. D.; Delagado, J. D.; Macedo, F. L. L.; Timenetsky, M. C. S. T.; de Paula, R.; Spinola, R.; de Deus, J. T.; Mucci, L. F.; Tubaki, R. M.; de Menezes, R. M. T.; Ramos, P. L.; de Abreu, A. L.; da Cruz, L. N.; Loman, N.; de Filippis, A.

10.1101/645341 — epidemiology — Posted on 2019-05-22

1185 The Clathrin adaptor AP-1 and the Rab-stabilizing chaperone Stratum act in two parallel pathways to control the activation of the Notch pathway in Drosophila

Bellec, K.; Gicquel, I.; Le Borgne, R.

10.1101/645580 — developmental biology — Posted on 2019-05-21

1186 Opposing functions for retromer and Rab11 in extracellular vesicle cargo traffic at synapses

Walsh, R. B.; Becalska, A. N.; Zunitch, M. J.; Wang, S.; Isaac, B.; Yeh, A.; Koles, K.; Rodal, A. A.

10.1101/645713 — cell biology — Posted on 2019-05-21

1187 Directional stepping model for yeast dynein: Longitudinal- and side- step distributions

Granek, R.; Fayer, I.

10.1101/645796 — biophysics — Posted on 2019-05-21

1188 Cofactor selectivity in methylmalonyl-CoA mutase, a model cobamide-dependent enzyme

Sokolovskaya, O. M.; Mok, K. C.; Park, J. D.; Tran, J. L. A.; Quanstrom, K. A.; Taga, M. E.

10.1101/637140 — microbiology — Posted on 2019-05-21

1189 Intragenomic variability and extended sequence patterns in the mutational signature of ultraviolet light

Lindberg, M.; Bostrom, M.; Elliott, K.; Larsson, E.

10.1101/640722 — genomics — Posted on 2019-05-21

1190 Symmetric arrangement of mitochondria:plasma membrane contacts between adjacent photoreceptor cells regulated by Opa1

Meschede, I. P.; Seabra, M. C.; Futter, C. E.; Votruba, M.; Cheetham, M. E.; Burgoyne, T.

10.1101/635094 — cell biology — Posted on 2019-05-21

1191 A bacterial resolvase first exploits, then constrains intrinsic dynamics of the Holliday junction to direct recombination

Ray, S.; Pal, N.; Walter, N.

10.1101/644575 — biophysics — Posted on 2019-05-21

1192 Genome-wide association study in two cohorts from a multi-generational mouse advanced intercross line highlights the difficulty of replication

Zhou, X.; St. Pierre, C. L.; Gonzales, N. M.; Cheng, R.; Chitre, A. S.; Sokoloff, G.; Palmer, A. A.

10.1101/387613 — genetics — Posted on 2019-05-21

1193 De-risking drug discovery of intracellular targeting peptides: screening strategies to eliminate false-positive hits

Ng, S.; Juang, Y.-C.; Chandramohan, A.; Kaan, H. Y. K.; Sadruddin, A.; Yuen, T. Y.; Ferrer, F. J.; Lee, X. E. C.; Xi, L.; Johannes, C. W.; Brown, C. J.; Kannan, S.; Aronica, P. G.; Berglund, N.; Verma, C. S.; Liu, L.; Stoeck, A.; Sawyer, T. K.; Partridge, A. W.; Lane, D. P.

10.1101/636563 — biochemistry — Posted on 2019-05-21

1194 Molecular Inverse Comorbidity between Alzheimer’s disease and Lung Cancer: new insights from Matrix Factorization

Greco, A.; Sanchez-Valle, J.; Pancaldi, V.; Baudot, A.; Barillot, E.; Caselle, M.; Valencia, A.; Zinovyev, A.; Cantini, L.

10.1101/643890 — systems biology — Posted on 2019-05-21

1195 Allelic polymorphism shapes collective phenotypes in evolving Pseudomonas aeruginosa populations

Azimi, S.; Roberts, A. E.; Peng, S.; Weitz, J. S.; McNally, A.; Brown, S. P.; Diggle, S. P.

10.1101/644724 — microbiology — Posted on 2019-05-21

1196 Non-lethal oxidative stress boosts bacterial survival and evolvability under lethal exposure

Rodriguez Rojas, A.; Kim, J.; Johnston, P. R.; Makarova, O.; Eravci, M.; Weise, C.; Hengge, R.; Rolff, J.

10.1101/575134 — evolutionary biology — Posted on 2019-05-21

1197 A proposed microcosm for landscape ecology: beyond the binary to the patch-mosaic model

Wiersma, Y. F.; Wigle, R. D.; McMullin, R. T. T.

10.1101/542985 — ecology — Posted on 2019-05-21

1198 Dynamic Laser Speckle Imaging

Postnov, D. D.; Tang, J.; Erdener, S. E.; Kılıc, K.; Boas, D. A.

10.1101/626515 — bioengineering — Posted on 2019-05-21

1199 A light-dependent molecular link between competition cues and defense responses in plants

Fernandez-Milmanda, G. L.; Crocco, C. D.; Reichelt, M.; Mazza, C. A.; Koellner, T. G.; Zhang, T.; Cargnel, M. D.; Lichy, M. Z.; Koo, A. J.; Austin, A. T.; Gershenzon, J.; Ballare, C. L.

10.1101/637504 — plant biology — Posted on 2019-05-21

1200 Jointly embedding multiple single-cell omics measurements

Liu, J.; Huang, Y.; Singh, R.; Vert, J.-P.; Noble, W.

10.1101/644310 — bioinformatics — Posted on 2019-05-21

1201 Modelling the population dynamics of Plasmodium falciparum gametocytes in humans during malaria infection

Cao, P.; Collins, K. A.; Zaloumis, S.; Wattanakul, T.; Tarning, J.; Simpson, J. A.; McCarthy, J. S.; McCaw, J. M.

10.1101/641472 — bioinformatics — Posted on 2019-05-21

1202 Malaria.tools: comparative genomic and transcriptomic database for Plasmodium species

Tan, Q. W.; Mutwil, M.

10.1101/639179 — bioinformatics — Posted on 2019-05-21

1203 Generalized locomotion of brittle stars with an arbitrary number of arms

Wakita, D.; Kagaya, K.; Aonuma, H.

10.1101/616383 — animal behavior and cognition — Posted on 2019-05-21

1204 Hierarchical temporal prediction captures motion processing from retina to higher visual cortex

Singer, Y.; Willmore, B. D.; King, A. J.; Harper, N. S.

10.1101/575464 — neuroscience — Posted on 2019-05-21

1205 Distinct sensorimotor feedback loops for dynamic and static control of primate precision grip

Oya, T.; Takei, T.; Seki, K.

10.1101/640201 — neuroscience — Posted on 2019-05-21

1206 Jumping To Conclusions, General Intelligence, And Psychosis Liability: Findings From The Multi-Centre EU-GEI Case-Control Study

Tripoli, G.; Quattrone, D.; Ferraro, L.; Gayer-Anderson, C.; Rodriguez, V.; La Cascia, C.; La Barbera, D.; Sartorio, C.; Tarricone, I.; Berardi, D.; Szoke, A.; Arango, C.; Tortelli, A.; Llorca, P.-M.; de Haan, L.; Velthorst, E.; Bobes, J.; Bernardo, M.; Sanjuan, J.; Santos, J. L.; Arrojo, M.; Del-Ben, C. M.; Rossi Menezes, P.; Selten, J.-P.; Jones, P. B.; Richards, A.; O'Donovan, M.; Rutten, B. R.; van Os, J.; Morgan, C.; Sham, P. C.; Murray, R. M.; Murray, G. K.; Di Forti, M.

10.1101/634352 — neuroscience — Posted on 2019-05-21

1207 Local signatures of founding populations confound examination of adaptive divergence in invasive populations

Cardilini, A. P. A.; Stuart, K. C.; Cassey, P.; Richardson, M. F.; Sherwin, W.; Rollins, L. A.; Sherman, C. D. H.

10.1101/643569 — evolutionary biology — Posted on 2019-05-21

1208 Do signaling networks and whole-transcriptome gene expression profiles orchestrate the same symphony?

Piran, M.; Karbalaee, R.; Piran, M.; Mirzaie, M.; Ansari-Pour, N.; Tang, J.; Jafari, M.

10.1101/643866 — systems biology — Posted on 2019-05-21

1209 Mechanical stress initiates and sustains the morphogenesis of wavy leaf epidermal cells

Bidhendi, A. J.; Altartouri, B.; Gosselin, F.; Geitmann, A.

10.1101/563403 — plant biology — Posted on 2019-05-21

1210 Predictive coding of action intentions in dorsal and ventral visual stream is based on visual anticipations, memory-based information and motor preparation

Monaco, S.; Malfatti, G.; Zendron, A.; Pellencin, E.; Turella, L.

10.1101/480590 — neuroscience — Posted on 2019-05-21

1211 Learning of distant state predictions by the orbitofrontal cortex in humans

Wimmer, G. E.; Buechel, C.

10.1101/450999 — neuroscience — Posted on 2019-05-21

1212 Chemogenetic inhibition of the amygdala modulates emotional behavior expression in infant rhesus monkeys

Raper, J.; Murphy, L.; Richardson, R.; Romm, Z.; Kovacs-Balint, Z.; Payne, C.; Galvan, A.

10.1101/534214 — neuroscience — Posted on 2019-05-21

1213 A neural system for encoding odor valence which influences approach behaviors

Gadziola, M. A.; Stetzik, L. A.; Milton, A. J.; Arakawa, K.; Wesson, D. W.

10.1101/617902 — neuroscience — Posted on 2019-05-21

1214 Population persistence under high mutation rate: from evolutionary rescue to lethal mutagenesis

Anciaux, Y.; Lambert, A.; Ronce, O.; Roques, L.; Martin, G.

10.1101/521203 — evolutionary biology — Posted on 2019-05-21

1215 In vivo Interactions between Myosin XI, Vesicles, and Filamentous Actin Are Fast and Transient

Bibeau, J. P.; Furt, F.; Mousavi, S. I.; Kingsley, J. L.; Levine, M. F.; Tuzel, E.; Vidali, L.

10.1101/624361 — cell biology — Posted on 2019-05-21

1216 Enhanced TF binding site maps improve regulatory networks learned from accessible chromatin data

Kulkarni, S. R.; Jones, D. M.; Vandepoele, K.

10.1101/545780 — bioinformatics — Posted on 2019-05-21

1217 Frontal and occipito-temporal Theta activity as marker of error monitoring in Human-Avatar joint performance

Moreau, Q.; Candidi, M.; Era, V.; Tieri, G.; Aglioti, S. M.

10.1101/402149 — neuroscience — Posted on 2019-05-21

1218 Interregional causal influences of brain metabolic activity reveal the spread of aging effects during normal aging

Di, X.; Wolfer, M.; Amend, M.; Wehrl, H.; Ionescu, T. M.; Pichler, B. J.; Biswal, B. B.; Alzheimer's Disease Neuroimaging Initiative,

10.1101/490292 — neuroscience — Posted on 2019-05-21

1219 Learning dynamical information from static protein and sequencing data

Pearce, P.; Woodhouse, F. G.; Forrow, A.; Kelly, A.; Kusumaatmaja, H.; Dunkel, J.

10.1101/401067 — bioinformatics — Posted on 2019-05-21

1220 Quantification of bioagressors induced yield gap for grain crops in France

Devaud, N.; Barbu, C. M.

10.1101/641563 — plant biology — Posted on 2019-05-21

1221 Maternal Overprotection in Childhood is Associated with Amygdala Reactivity and Structural Connectivity in Adulthood

Farber, M. J.; Kim, M. J.; Knodt, A. R.; Hariri, A. R.

10.1101/535823 — neuroscience — Posted on 2019-05-21

1222 Space, time, and captivity: quantifying the factors influencing the fecal microbiome of an alpine ungulate

Haworth, S. E.; White, K. S.; Cote, S. D.; Shafer, A. B. A.

10.1101/475459 — microbiology — Posted on 2019-05-21

1223 Complete genome screening of clinical MRSA isolates identifies lineage diversity and provides full resolution of transmission and outbreak events

Sullivan, M. J.; Altman, D. R.; Chacko, K. I.; Ciferri, B.; Webster, E.; Pak, T. R.; Deikus, G.; Lewis-Sandari, M.; Khan, Z.; Beckford, C.; Rendo, A.; Samaroo, F.; Sebra, R.; Karam-Howlin, R.; Dingle, T.; Hamula, C.; Bashir, A.; Schadt, E.; Patel, G.; Wallach, F.; Kasarskis, A.; Gibbs, K.; van Bakel, H.

10.1101/522078 — microbiology — Posted on 2019-05-21

1224 Viral long-term evolutionary strategies favor stability over proliferation

Aris-Brosou, S.; Parent, L.; Ibeh, N.

10.1101/539239 — evolutionary biology — Posted on 2019-05-21

1225 Community size affects the signals of ecological drift and niche selection on biodiversity

Siqueira, T.; Saito, V. S.; Bini, L. M.; Melo, A. S.; Petsch, D. K.; Landeiro, V. L.; Tolonen, K. T.; Jyrkankallio-Mikkola, J.; Soininen, J.; Heino, J.

10.1101/515098 — ecology — Posted on 2019-05-21

1226 Changes in the expression of mitochondrial morphology-related genes during the differentiation of murine embryonic stem cells

Lee, J. E.; Seo, B. J.; Han, M. J.; Hong, Y. J.; Hong, K.; Song, H.; Lee, J. W.; Do, J. T.

10.1101/644906 — cell biology — Posted on 2019-05-21

1227 Novel algorithms for efficient subsequence searching and mapping in nanopore raw signals towards targeted sequencing

Han, R.; Wang, S.; Gao, X.

10.1101/491456 — bioinformatics — Posted on 2019-05-21

1228 Equitable Thresholding and Clustering (ETAC): A novel method for FMRI clustering in AFNI

Cox, R. W.

10.1101/295931 — bioinformatics — Posted on 2019-05-21

1229 opentsv prevents the corruption of scientific data byExcel

De Rijk, P.; D'Hert, S.; Strazisar, M.

10.1101/497370 — bioinformatics — Posted on 2019-05-21

1230 Empirically-Derived Synthetic Populations to Mitigate Small Sample Sizes

Fowler, E. E.; Berglund, A.; Schell, M. J.; Sellers, T. A.; Eschrich, S.; Heine, J.

10.1101/441238 — bioinformatics — Posted on 2019-05-21

1231 Identification of universal and cell type specific p53 DNA binding

Hafner, A.; Kublo, L.; Lahav, G.; Stewart-Ornstein, J.

10.1101/177667 — genomics — Posted on 2019-05-21

1232 Ferroptosis is programmed by the coordinated regulation of glutathione and iron metabolism by BACH1

Nishizawa, H.; Matsumoto, M.; Shindo, T.; Saigusa, D.; Kato, H.; Suzuki, K.; Sato, M.; Ishii, Y.; Shimokawa, H.; Igarashi, K.

10.1101/644898 — cell biology — Posted on 2019-05-21

1233 Plasticity of cell migration resulting from mechanochemical coupling

Cao, Y.; Ghabache, E.; Rappel, W.-J.

10.1101/644880 — biophysics — Posted on 2019-05-21

1234 Efficient differentiation and polarization of primary cultured neurons on poly(lactic acid) scaffolds with microgrooved structures

Otomo, A.; Ueda, M. T.; Fujie, T.; Hasebe, A.; Okamura, Y.; Takeoka, S.; Hadano, S.; Nakagawa, S.

10.1101/644781 — molecular biology — Posted on 2019-05-21

1235 Levetiracetam inhibits SV2A-synaptotagmin interaction at synapses that lack SV2B

Ciruelas, K.; Marcotulli, D.; Sullivan, J. M.; Bajjalieh, S. M.

10.1101/640185 — pharmacology and toxicology — Posted on 2019-05-21

1236 β-bursts reveal the trial-to-trial dynamics of movement initiation and cancellation

Wessel, J. R.

10.1101/644682 — neuroscience — Posted on 2019-05-21

1237 Functional brain network modeling in sub-acute stroke patients and healthy controls during rest and continuous attentive tracking

Dorum, E. S.; Kaufmann, T.; Alnaes, D.; Richard, G.; Kolskaar, K. K.; Engvig, A.; Sanders, A.-M.; Ulrichsen, K. M.; Ihle-Hansen, H.; Nordvik, J. E.; Westlye, L. T.

10.1101/644765 — neuroscience — Posted on 2019-05-21

1238 No evidence for social genetic effects or genetic similarity among friends beyond that due to population stratification: a reappraisal of Domingue et al (2018)

Yengo, L.; Sidari, M.; Verweij, K. J. H.; Visscher, P.; KELLER, M. C.; Zietsch, B.

10.1101/643304 — genetics — Posted on 2019-05-21

1239 Into-India or out-of-India? Historical biogeography of freshwater gastropod genus Pila (Ampullariidae)

Sil, M.; N. A., A.; Karanth, K. P.

10.1101/643882 — evolutionary biology — Posted on 2019-05-21

1240 Cartography of opportunistic pathogens and antibiotic resistance genes in a tertiary hospital environment

Chng, K. R.; Li, C.; Bertrand, D.; Ng, H. Q. A.; Kwah, J. S.; Low, H. M.; Tong, C.; Xu, L.; Av-Shalom, T. V.; Khor, C. C.; MetaSUB Consortium, ; Chen, S. L.; Mason, C. E.; Ng, O. T.; Marimuthu, K.; Ang, B.; Nagarajan, N.

10.1101/644740 — microbiology — Posted on 2019-05-21

1241 Inverted encoding models estimate sensible channel responses for sensible models

Sprague, T. C.; Boynton, G. M.; Serences, J.

10.1101/642710 — neuroscience — Posted on 2019-05-21

1242 The minimal behavioral time window for reward conditioning in the nucleus accumbens of mice

Yamaguchi, K.; Maeda, Y.; Sawada, T.; Iino, Y.; Tajiri, M.; Nakazato, R.; Kasai, H.; Yagishita, S.

10.1101/641365 — neuroscience — Posted on 2019-05-21

1243 Simulating emotions: An active inference model of emotional state inference and emotion concept learning

Smith, R.; Parr, T.; Friston, K. J.

10.1101/640813 — neuroscience — Posted on 2019-05-21

1244 Calcium Sensing Receptor Common Variants Influence the Effects of Serum Calcium on Coronary Artery Disease Risks

Smelser, D. T.; Hannan, F. M.; Metpally, R. P.; Krishnamurthy, S.; Carey, D. J.; Thakker, R. V.; Breitwieser, G. E.

10.1101/644559 — genetics — Posted on 2019-05-21

1245 Inferring diploid 3D chromatin structures from Hi-C data

Cauer, A.; Yardimci, G. G.; Vert, J.-P.; Varoquaux, N.; Noble, W.

10.1101/644294 — bioinformatics — Posted on 2019-05-21

1246 Allelic polymorphism shapes collective phenotypes in evolving Pseudomonas aeruginosa populations

Azimi, S.; Roberts, A. E.; Peng, S.; Weitz, J. S.; McNally, A.; Brown, S. P.; Diggle, S. P.

10.1101/644724 — microbiology — Posted on 2019-05-21

1247 Enhanced effective codon numbers to understand codon usage bias

Smith, R. D.

10.1101/644609 — genetics — Posted on 2019-05-21

1248 Host density dependence and environmental factors affecting laurel wilt invasion

Choudhury, R. A.; Er, H. L.; Hughes, M.; Smith, J.; Pruett, G.; Konkol, J.; Ploetz, R.; Marois, J.; Garrett, K. A.; van Bruggen, A. H. C.

10.1101/642827 — plant biology — Posted on 2019-05-21

1249 Differential chromatin accessibility in developing projection neurons is correlated with transcriptional regulation of cell fate

Heavner, W. E.; Ji, S.; Notwell, J. H.; Dyer, E. S.; Tseng, A. M.; Birgmeier, J.; Yoo, B.; Bejerano, G.; McConnell, S. K.

10.1101/645572 — developmental biology — Posted on 2019-05-21

1250 BaRTv1.0: an improved barley reference transcript dataset to determine accurate changes in the barley transcriptome using RNA-seq

Rapazote-Flores, P.; Bayer, M.; Milne, L.; Mayer, C.-D.; Fuller, J.; Guo, W.; Hedley, P. E.; Morris, J.; Halpin, C.; Kam, J.; McKim, S. M.; Zwirek, M.; Casao, M. C.; Barakate, A.; Schreiber, M.; Stephen, G.; Zhang, R.; Brown, J. W.; Waugh, R.; Simpson, C. G.

10.1101/638106 — genomics — Posted on 2019-05-21

1251 A Subset of Olfactory Sensory Neurons Express Forkhead Box J1-Driven eGFP

Pathak, S.; Larson, E. D.; Ramakrishnan, V. R.; Finger, T. E.

10.1101/643460 — neuroscience — Posted on 2019-05-21

1252 In the presence of population structure: From genomics to candidate genes underlying local adaptation

Price, N.; Lopez, L.; Platts, A. E.; Lasky, J. R.; McKay, J. K.

10.1101/642306 — evolutionary biology — Posted on 2019-05-21

1253 Benchmarking algorithms for gene regulatory network inference from single-cell transcriptomic data

Pratapa, A.; Jalihal, A.; Law, J. N.; Bharadwaj, A.; Murali, T. M.

10.1101/642926 — bioinformatics — Posted on 2019-05-21

1254 Performance Evaluation of Traditional Signal Processing Methods in Localizing Tursiops truncatus Whistles in a Reverberant Aquatic Environment

Woodward, S.; Magnasco, M.

10.1101/642736 — biophysics — Posted on 2019-05-21

1255 Bioorthogonal protein-DNA conjugation methods for force spectroscopy

Synakewicz, M.; Bauer, D.; Rief, M.; Itzhaki, L. S.

10.1101/631572 — biophysics — Posted on 2019-05-21

1256 Histone acetylome-wide association study of tuberculosis

del Rosario, R. C. H.; Poschmann, J.; Kumar, P.; Cheng, C. Y.; Ong, S. T.; Hajan, H. S.; Kumar, D.; Marzuki, M.; Lu, X.; Lee, A.; Tang, Y.; Chee, C. B. E.; Lim, C.; Lee, B.; Lum, J.; Zolezzi, F.; Poidinger, M.; Rotzschke, O.; Khor, C. C.; Wang, Y. T.; Chandy, K. G.; De Libero, G.; Singhal, A.; Prabhakar, S.

10.1101/644112 — immunology — Posted on 2019-05-21

1257 Socio-spatial heterogeneity in participation in mass dog rabies vaccination campaigns, Arequipa, Peru

Castillo-Neyra, R.; Toledo, A.; Arevalo-Nieto, C.; MacDonald, H.; De la Puente-Leon, M.; Naquira-Velarde, C.; Paz-Soldan, V. A.; Buttenheim, A. M.; Levy, M. Z.

10.1101/542878 — epidemiology — Posted on 2019-05-21

1258 Spatiotemporal limits of optogenetic manipulations in cortical circuits

Li, N.; Chen, S.; Guo, Z. V.; Chen, H.; Huo, Y.; Inagaki, H.; Davis, C.; Hansel, D.; Guo, C.; Svoboda, K.

10.1101/642215 — neuroscience — Posted on 2019-05-21

1259 Prodrug defiance reveals logic-based strategies for treating bacterial resistance

Holt, B. A.; Curro, I.; Kwong, G. A.

10.1101/556951 — bioengineering — Posted on 2019-05-21

1260 Chloroplast nucleoids are highly dynamic in ploidy, number, and structure during leaf development

Greiner, S.; Golczyk, H.; Malinova, I.; Pellizzer, T.; Bock, R.; Boerner, T.; Herrmann, R. G.

10.1101/632240 — plant biology — Posted on 2019-05-21

1261 Nanoscale dynamics of cholesterol in the cell membrane

Pinkwart, K. A.; Schneider, F.; Lukoseviciute, M.; Sauka-Spengler, T.; Lyman, E.; Eggeling, C.; Sezgin, E.

10.1101/644005 — biophysics — Posted on 2019-05-21

1262 Adaptive substitutions underlying cardiac glycoside insensitivity in insects exhibit epistasis in vivo.

Taverner, A. M.; Yang, L.; Barile, Z. J.; Becky, L.; Peng, J.; Pinharanda, A.; Rao, A.; Roland, B. P.; Talsma, A. D.; Wei, D.; Petschenka, G.; Palladino, M. J.; Andolfatto, P.

10.1101/621185 — evolutionary biology — Posted on 2019-05-21

1263 Benchmarking clustering methods for single cell sequencing cancer data

Ciccolella, S.; Patterson, M.; Bonizzoni, P.; Della Vedova, G.

10.1101/586545 — cancer biology — Posted on 2019-05-21

1264 MolMeDB: Molecules on Membranes Database

Juracka, J.; Srejber, M.; Melikova, M.; Bazgier, V.; Berka, K.

10.1101/472167 — biophysics — Posted on 2019-05-21

1265 Stability and dynamics interrelations in a Lipase: Mutational and MD simulations based investigations

Moharana, T. R.; Kumar, V.; Rao, N. M.

10.1101/634253 — biophysics — Posted on 2019-05-21

1266 Probing Allosteric Coupling of a Constitutively Open Mutant of the Ion Channel KcsA using Solid State NMR

Sun, Z.; Xu, Y.; Zhang, D.; McDermott, A. E.

10.1101/567024 — biophysics — Posted on 2019-05-21

1267 Genome-wide identification of long non-coding RNAs and their regulatory networks involved in Apis mellifera ligustica response to Nosema ceranae infection

Guo, R.; Chen, H.; Du, Y.; zhou, d.; geng, s.; wang, h.; zhu, z.; shi, c.; wan, j.; xiong, c.; zheng, y.; Chen, D.

10.1101/643627 — bioinformatics — Posted on 2019-05-21

1268 Dual NMDAR signaling in astrocytes: flux-independent pH sensor & flux-dependent mitochondrial regulator through membrane-mitochondria communication

Montes de Oca Balderas, P.; Hernandez Cruz, A.

10.1101/633875 — cell biology — Posted on 2019-05-21

1269 Gating Mechanism of β-Ketoacyl-ACP Synthases

Mindrebo, J.; Patel, A.; Kim, W.; Davis, T.; Chen, A.; Bartholow, T.; La Clair, J.; McCammon, J. A.; Noel, J.; Burkart, M.

10.1101/644518 — biochemistry — Posted on 2019-05-21

1270 Reading-out task variables as a low-dimensional reconstruction of neural spike trains in single trials.

Koren, V.; Andrei, A.; Hu, M.; Dragoi, V.; Obermayer, K.

10.1101/643668 — neuroscience — Posted on 2019-05-21

1271 TrkB Agonist LM22A-4 Increases Oligodendroglial Populations During Myelin Repair in the Brain

Nguyen, H. T.; Wood, R. J.; Prawdiuk, A. R.; Furness, S. G.; Xiao, J.; Murray, S.; Fletcher, J.

10.1101/642918 — neuroscience — Posted on 2019-05-21

1272 Automated interpretation of Cryo-EM density maps with convolutional neural networks

Mostosi, P.; Schindelin, H.; Kollmannsberger, P.; Thorn, A.

10.1101/644476 — molecular biology — Posted on 2019-05-21

1273 Crystal violet structural analogues identified by in silico drug repositioning present anti-Trypanosoma cruzi activity through inhibition of proline transporter TcAAAP069

Saye, M.; Gauna, L.; Valera-Vera, E.; Reigada, C.; Miranda, M.; Pereira, C. A.

10.1101/645333 — microbiology — Posted on 2019-05-21

1274 Coxiella burnetii Type 4B Secretion System-dependent manipulation of endolysosomal maturation is required for bacterial growth

Gilk, S. D.; Samanta, D.; Clemente, T. M.

10.1101/645382 — microbiology — Posted on 2019-05-21

1275 HCMV miR-US22 down-regulation of EGR-1 regulates CD34+ hematopoietic progenitor cell proliferation and viral reactivation

Mikell, I. A.; Crawford, L. B.; Hancock, M. H.; Mitchell, J.; Buehler, J.; Goodrum, F.; Nelson, J. A.

10.1101/645374 — microbiology — Posted on 2019-05-21

1276 The ROP16III-dependent early immune response determines the sub-acute CNS immune response and type III Toxoplasma gondii survival

Tuladhar, S.; Koshy, A.; Kochanowsky, J. A.; Bhaskara, A.; Ghotmi, Y.

10.1101/645390 — microbiology — Posted on 2019-05-21

1277 Blind exploration of the unreferenced transcriptome reveals novel RNAs for prostate cancer diagnosis

Pinskaya, M.; Saci, Z.; Gallopin, M.; Nguyen, N. H.; Gabriel, M.; Firlej, V.; Descrimes, M.; de la Taille, A.; Londono Vallejo, J. A.; Allory, Y.; Gautheret, D.; Morillon, A.

10.1101/644104 — genomics — Posted on 2019-05-21

1278 The evolutionary origins and diversity of the neuromuscular system of paired appendages in batoids

Turner, N.; Mikalauskaite, D.; Barone, K.; Flaherty, K.; Senevirathne, G.; Adachi, N.; Shubin, N.; Nakamura, T.

10.1101/644062 — evolutionary biology — Posted on 2019-05-21

1279 Yap suppresses T cell function and infiltration in the tumor microenvironment

Stampouloglou, E.; Federico, A.; Slaby, E.; Monti, S.; Szeto, G. L.; Varelas, X.

10.1101/644757 — cancer biology — Posted on 2019-05-21

1280 A bacterial resolvase first exploits, then constrains intrinsic dynamics of the Holliday junction to direct recombination

Ray, S.; Pal, n.; Walter, N.

10.1101/644575 — biophysics — Posted on 2019-05-21

1281 The TFIIH components p44/p62 act as a damage sensor during nucleotide excision repair

Barnett, J. T.; Kuper, J.; Koelmel, W.; Kisker, C.; Kad, N. M.

10.1101/643874 — biochemistry — Posted on 2019-05-21

1282 Reproducible data management and analysis using R

Fjukstad, B.; Shvetsov, N.; Nost, T. H.; Bovelstad, H.; Halbach, T.; Holsbo, E.; Hansen, K.; Lund, E.; Bongo, L. A.

10.1101/644625 — bioinformatics — Posted on 2019-05-21

1283 A Hessian-based decomposition to characterize how performance in complex motor skills depends on individual strategy and variability

Tommasino, P.; Maselli, A.; Campolo, D.; Lacquaniti, F.; d'Avella, A.

10.1101/645317 — neuroscience — Posted on 2019-05-21

1284 NMDAR-activated PP1 dephosphorylates GluN2B to modulate NMDAR synaptic content.

Chiu, A. M.; Wang, J.; Fiske, M. P.; Hubalkova, P.; Barse, L.; Gray, J. A.; Sanz-Clemente, A.

10.1101/520882 — neuroscience — Posted on 2019-05-21

1285 Extracting T Cell Function and Differentiation Characteristics from the Biomedical Literature

Czech, E. A.; Hammerbacher, J.

10.1101/643767 — immunology — Posted on 2019-05-21

1286 Selecting causal risk factors from high-throughput experiments using multivariable Mendelian randomization

Zuber, V.; Colijn, J. M.; Klaver, C.; Burgess, S.

10.1101/396333 — genetics — Posted on 2019-05-21

1287 Agricultural and geographic factors shaped the North American 2015 highly pathogenic avian influenza H5N2 outbreak

Hicks, J.; Lee, D.-h.; Duvvuri, V.; Kim Torchetti, M.; Swayne, D.; Bahl, J.

10.1101/645408 — epidemiology — Posted on 2019-05-21

1288 Using virtual reality and thermal imagery to improve statistical modelling of vulnerable and protected species

Leigh, C.; Heron, G.; Wilson, E.; Gregory, T.; Clifford, S.; Holloway, J.; McBain, M.; Gonzalez, F.; McGree, J.; Brown, R.; Mengersen, K.; Peterson, E. E.

10.1101/645291 — ecology — Posted on 2019-05-21

1289 Needlestack: an ultra-sensitive variant caller for multi-sample next generation sequencing data

Delhomme, T. M.; Avogbe, P. H.; Gabriel, A. A. G.; Alcala, N.; Leblay, N.; Voegele, C.; Vallee, M.; Chopard, P.; Chabrier, A.; Abedi-Ardekani, B.; Gaborieau, V.; Holcatova, I.; Janout, V.; Foretova, L.; Milosavljevic, S.; Zaridze, D.; Mukeriya, A.; Brambilla, E.; Brennan, P.; Scelo, G.; Fernandez-Cuesta, L.; Byrnes, G.; Le Calvez-Kelm, F.; McKay, J. D. D.; Foll, M.

10.1101/639377 — bioinformatics — Posted on 2019-05-21

1290 Comparison of IL-33 and IL-5 Family Mediated Activation of Human Eosinophils

Angulo, E. L.; McKernan, E. M.; Fichtinger, P. S.; Mathur, S. K.

10.1101/645275 — immunology — Posted on 2019-05-21

1291 Microtranscriptome of contrasting sugarcane cultivars in response to aluminum stress

Silva, R. G. d.; Mateus-Rosa, T.; Franca, S. C.; Kottapalli, P.; Kottapalli, K. R.; ZINGARETTI, S. M.

10.1101/645267 — genomics — Posted on 2019-05-21

1292 Energy balance; choices between energy spend on migration and mating influences the life cycle of the pond bat (Myotis dasycneme)

Haarsma, A.-J.; Lina, P. H. C.; Voute, A. M.; Glas, G. H.; Siepel, H.

10.1101/645309 — ecology — Posted on 2019-05-21

1293 Dual role of Miro protein clusters in mitochondrial cristae organisation and ER-Mitochondria Contact Sites

Modi, S.; Lopez-Domenech, G.; Halff, E. F.; Covill-Cooke, C.; Ivankovic, D.; Melandri, D.; Arancibia-Carcamo, L.; Burden, J. J.; Lowe, A. R.; Kittler, J. T.

10.1101/639948 — cell biology — Posted on 2019-05-21

1294 A low-cost and high-precision scanning electrochemical microscope built with open source tools

Guver, A.; Fifita, N.; Milas, P.; Straker, M.; Guy, M.; Green, K.; Yildirim, T.; Unlu, I.; Yigit, V.; Ozturk, B.

10.1101/645283 — biochemistry — Posted on 2019-05-21

1295 The molecular determinants of R-roscovitine block of hERG channels

Cernuda, B. D.; Fernandes, C. D.; Allam, S.; Orzillo, M.; Suppa, G.; Chia Chang, Z.; Athanasopoulos, D.; Buraei, Z.

10.1101/644336 — pharmacology and toxicology — Posted on 2019-05-21

1296 REVERSIBLE PULMONARY TRUNK BANDING. XI:MYOCARDIAL VASCULAR ENDOTHELIAL GROWTH FACTOR EXPRESSION IN YOUNG GOATS SUBMITTED TO VENTRICULAR RETRAINING

Assad, R. S.; Rocha, E. A. V.; Aiello, V. D.; Meniconi, T. A.; Abduch, M. C. D.; Thomaz, P. G.; Jatene, M. B.; Moreira, L. F. P.

10.1101/644278 — pathology — Posted on 2019-05-21

1297 The effect of APOE genotype and streamline density volume, on hippocampal CA1 down-regulation: a real-time fMRI virtual reality neurofeedback study

Skouras, S.; Torner, J.; Anderson, P.; Koush, Y.; Falcon, C.; Minguillon, C.; Fauria, K.; Alpiste, F.; Gispert, J. D.; Molinuevo, J. L.; ALFA Study,

10.1101/643577 — neuroscience — Posted on 2019-05-21

1298 The structural unit of melanin in the cell wall of the fungal pathogen Cryptococcus neoformans

Camacho, E.; Vij, R.; Chrissian, C.; Prados-Rosales, R.; Gil, D.; O'Meally, R. N.; Cordero, R. J.; Cole, R. N.; McCaffery, J. M.; Stark, R. E.; Casadevall, A.

10.1101/644484 — microbiology — Posted on 2019-05-21

1299 Co-occurrence or dependence? Using spatial analyses to explore the interaction between palms and triatomines.

Calderon, J. M.; Gonzalez, C.

10.1101/644385 — ecology — Posted on 2019-05-21

1300 Algorithmic differentiation improves the computational efficiency of OpenSim-based optimal control simulations of movement

Falisse, A.; Serrancoli, G.; Dembia, C. L.; Gillis, J.; De Groote, F.

10.1101/644245 — bioengineering — Posted on 2019-05-21

1301 NEAT1 involves Alzheimer’s Disease (AD) progression via regulation of glycolysis and P-tau

Yaou, Z.; Zhao, Y.; Xie, W.; Wang, Z.; Mao, Y.; Li, B.; Zhu, Y.; Zhang, S.; Wang, S.; Jiang, Y.; Xu, N.; Yizhen, X.

10.1101/643718 — neuroscience — Posted on 2019-05-21

1302 IN VITRO STUDY OF DENTIN HYPERSENSITIVITY TREATED BY WHITLOCKITE GLASS-CERAMICS

Juraski, A. d. C.

10.1101/226068 — bioengineering — Posted on 2019-05-21

1303 The art of using t-SNE for single-cell transcriptomics

Kobak, D.; Berens, P.

10.1101/453449 — bioinformatics — Posted on 2019-05-21

1304 scCapsNet: a deep learning classifier with the capability of interpretable feature extraction, applicable for single cell RNA data analysis

Wang, L.; Nie, R.; Xin, R.; Zhang, J.; Cai, J.

10.1101/506642 — bioinformatics — Posted on 2019-05-21

1305 Association between alcohol consumption and Alzheimer’s disease: A Mendelian randomization Study

Andrews, S. J.; Goate, A.; Anstey, K. J.

10.1101/190165 — genetics — Posted on 2019-05-21

1306 Experimental and Computational Evidence for Self-Assembly of a Functional Form of Mitochondrial Uncoupling Protein 2 in Lipid Bilayers

Ardalan, A.; Uwumarenogie, S.; Fish, M.; Sowlati-Hashjin, S.; Karttunen, M.; Smith, M.; Jelokhani-Niaraki, M.

10.1101/430835 — biochemistry — Posted on 2019-05-21

1307 A thermodynamic atlas of carbon redox chemical space

Jinich, A.; Sanchez-Lengeling, B.; Ren, H.; Goldford, J. E.; Noor, E.; Sanders, J. N.; Segre, D.; Aspuru-Guzik, A.

10.1101/245811 — systems biology — Posted on 2019-05-21

1308 Neural Dynamics of Executive Function in Cognitively-able Kindergarteners with Autism Spectrum Disorders (ASD) as Predictors of Concurrent Academic Achievement

Kim, S. H.; Buzzell, G.; Faja, S.; Choi, Y. B.; Thomas, H.; Brito, N.; Shuffrey, L.; Fifer, W.; Morrison, F.; Lord, C.; Fox, N.

10.1101/455485 — neuroscience — Posted on 2019-05-21

1309 Insulin-Producing Cells Monitor the Temperature and Compensate for Cold-Induced Sleep in Drosophila

Zhang, X. O.; Cui, X.; Zhu, D.

10.1101/419200 — neuroscience — Posted on 2019-05-21

1310 HIV-1 Vpr accessory protein interacts with REAF and mitigates its associated anti-viral activity.

Gibbons, J. M.; Marno, K. M.; Pike, R.; Lee, W.-y. J.; Jones, C. E.; Ogunkolade, B. W.; Pardieu, C.; Bryan, A.; Fu, R. M.; Warnes, G.; Rowley, P. A.; Sloan, R. D.; McKnight, A.

10.1101/408161 — microbiology — Posted on 2019-05-21

1311 Mutators drive evolution of multi-resistance to antibiotics

Gifford, D. R.; Berrios, E.; Joerres, C.; Galla, T.; Knight, C. G.

10.1101/643585 — evolutionary biology — Posted on 2019-05-21

1312 scVAE: Variational auto-encoders for single-cell gene expression data

Gronbech, C. H.; Vording, M. F.; Timshel, P. N.; Sonderby, C. K.; Pers, T. H.; Winther, O.

10.1101/318295 — bioinformatics — Posted on 2019-05-21

1313 Enrichment in conservative amino acid changes among fixed and standing missense variations in slow evolving proteins

Wang, M.; Wang, D.; Yu, J.; Huang, S.

10.1101/644666 — evolutionary biology — Posted on 2019-05-21

1314 Hybridization drives genetic erosion in sympatric desert fishes of western North America

Chafin, T. K.; Douglas, M. R.; Martin, B. T.; Douglas, M. E.

10.1101/644641 — evolutionary biology — Posted on 2019-05-21

1315 Unique spatial integration in mouse primary visual cortex and higher visual areas

Murgas, K. A.; Wilson, A. M.; Michael, V. C.; Glickfeld, L.

10.1101/643007 — neuroscience — Posted on 2019-05-21

1316 Differential genomic and transcriptomic events associated with high-grade transformation of Chronic Lymphocytic Leukemia

Klintman, J.; Stamatopoulos, B.; Ridout, K.; Eyre, T.; Lopez Pascua, L.; Appleby, N.; Knight, S. J.; Dreau, H.; Popitsch, N.; The HICF2 Consortium, ; Ehinger, M.; Martin-Subero, J. I.; Campo, E.; Mansson, R.; Rossi, D.; Taylor, J. C.; Vavoulis, D. V.; Schuh, A.

10.1101/644542 — genomics — Posted on 2019-05-21

1317 HCN channel-mediated neuromodulation can control action potential velocity and fidelity in central axons

Byczkowicz, N.; Eshra, A.; Montanaro, J.; Trevisiol, A.; Hirrlinger, J.; Kole, M. H. P.; Shigemoto, R.; Hallermann, S.

10.1101/643197 — neuroscience — Posted on 2019-05-21

1318 Comparison of odor responses of homologous medial and lateral glomeruli mapped in the olfactory bulb of the mouse

Sato, T.; Homma, R.; Nagayama, S.

10.1101/643288 — neuroscience — Posted on 2019-05-21

1319 Two different pathways for initiation of Trichoderma reesei Rad51-only meiotic recombination

Li, W.-C.; Chuang, Y.-C.; Chen, C.-L.; Wang, C.-L.; Chen, Y.-J.; Timofejeva, L.; Pong, W.-L.; Wang, T.-F.

10.1101/644443 — genetics — Posted on 2019-05-21

1320 Genome-wide RNAi screen for context-dependent tumor suppressors identified using in vivo models for neoplasia in Drosophila

Groth, C.; Vaid, P.; Khatpe, A.; Prashali, N.; Ahiya, A.; Andrejeva, D.; Chakladar, M.; Nagarkar, S.; Paul, R.; Eichenlaub, T.; Herranz, H.; Sridhar, T.; Cohen, S.; Shashidhara, L.

10.1101/643221 — developmental biology — Posted on 2019-05-21

1321 A fast microfluidic device to measure the deformability of red blood cells

Mehendale, N.; Mitra, D.; Paul, D.

10.1101/644161 — biophysics — Posted on 2019-05-21

1322 An omnidirectional visualization model of personalized gene regulatory networks

Chen, C.; Jiang, L.; Wang, M.; Wang, Y.; Shen, B.; Liu, Z.; Wang, Z.; Hou, W.; Berceli, S.; Wu, R.

10.1101/644070 — bioinformatics — Posted on 2019-05-21

1323 Anterior Insula Reflects Inferential Errors in Value-Based Decision-making and Perception

Loued-Khenissi, L.; Pfeuffer, A.; Einhaeuser, W.; Preuschoff, K.

10.1101/644427 — neuroscience — Posted on 2019-05-21

1324 Local signatures of founding populations confound examination of adaptive divergence in invasive populations

Stuart, K. C.; Cardilini, A. P. A.; Cassey, P.; Richardson, M. F.; Sherwin, W.; Rollins, L. A.; Sherman, C. D. H.

10.1101/643569 — evolutionary biology — Posted on 2019-05-21

1325 Next-generation sequencing of double stranded RNA is greatly improved by treatment with the inexpensive denaturing reagent DMSO

Wilcox, A. H.; Delwart, E.; Diaz-Munoz, S.

10.1101/644591 — microbiology — Posted on 2019-05-21

1326 Genome-wide mapping and profiling of γH2AX binding hotspots in response to different replication stress inducers

Lyu, X.; Chastain, M.; Chai, W.

10.1101/644500 — genomics — Posted on 2019-05-21

1327 Nested Active Learning for Efficient Model Contextualization and Parameterization

Cockrell, R. C.; Ozik, J.; Collier, N.; An, G.

10.1101/644401 — systems biology — Posted on 2019-05-21

1328 Molecular Inverse Comorbidity between Alzheimer’s disease and Lung Cancer: new insights from Matrix Factorization

Greco, A.; Sanchez-Valle, J.; Pancaldi, V.; Baudot, A.; Barillot, E.; Caselle, M.; Valencia, A.; Zinovyev, A.; Cantini, L.

10.1101/643890 — systems biology — Posted on 2019-05-21

1329 Do signaling networks and whole-transcriptome gene expression profiles orchestrate the same symphony?

Piran, M.; Karbalaee, R.; Piran, M.; Mirzaie, M.; Ansari-Pour, N.; Tang, J.; Jafari, M.

10.1101/643866 — systems biology — Posted on 2019-05-21

1330 Olfactory ensheathing cells from the nasal mucosa and olfactory bulb have distinct membrane properties

Smith, K. E.; Whitcroft, K.; Law, S.; Andrews, P.; Choi, D.; Jagger, D. J.

10.1101/640839 — physiology — Posted on 2019-05-21

1331 Parkin deficiency perturbs striatal circuit dynamics

Baaske, M. K.; Kramer, E. R.; Meka, D. P.; Engler, G.; Engel, A. K.; Moll, C. K. E.

10.1101/636142 — neuroscience — Posted on 2019-05-20

1332 Brain-to-brain synchrony predicts long-term memory retention more accurately than individual brain measures

Davidesco, I.; Laurent, E.; Valk, H.; West, T.; Dikker, S.; Milne, C.; Poeppel, D.

10.1101/644047 — neuroscience — Posted on 2019-05-21

1333 Npas1+-Nkx2.1+ Neurons Form A Unique Pallidal Neuron Subclass

Abecassis, Z.; Berceau, B.; Win, J.; Garcia, D.; Xenias, H.; Cui, Q.; Pamucku, A.; Hernandez, V.; Chon, U.; Lim, B.; Kim, Y.; Justice, N.; Awatramani, R.; Chan, C. S.

10.1101/644674 — neuroscience — Posted on 2019-05-21

1334 Physiotherapist confidence level in mobilising stroke patients after decompressive hemicraniectomy: are helmets useful?

Budhdeo, S.; Meek, T.; Cosco, T.; Turaga, S.; Chari, A.; Sharma, N.

10.1101/632604 — neuroscience — Posted on 2019-05-21

1335 Delta phase resetting mediates non-rhythmic temporal prediction

Daume, J.; Wang, P.; Maye, A.; Zhang, D.; Engel, A. K.

10.1101/643957 — neuroscience — Posted on 2019-05-21

1336 Retroposon Insertions within a Multispecies Coalescent Framework Suggest that Ratite Phylogeny is not in the ‘Anomaly Zone’

Springer, M. S.; Gatesy, J.

10.1101/643296 — evolutionary biology — Posted on 2019-05-21

1337 Inheritance of Chromatin Proteins in Budding Yeast: metabolic gene regulators TUP1, FPR4 and Rpd3L are retained in the mother cell.

Vasseur, P.; Tonazzini, S.; Rubert Castro, F.; Sucec, I.; El Koulali, K.; Urbach, S.; Radman-Livaja, M.

10.1101/644138 — cell biology — Posted on 2019-05-21

1338 Jointly embedding multiple single-cell omics measurements

Liu, J.; Huang, Y.; Singh, R.; Yardimci, G. G.; Noble, W.

10.1101/644310 — bioinformatics — Posted on 2019-05-21

1339 Isolation of a novel strain of Lactic Acid Bacteria from traditionally fermented common lime (Citrus aurantifolia) of Assam, India and analysis of exopolymeric substances produced by the strain

Borah, N.; Barman, A.; Baishya, D.

10.1101/643650 — microbiology — Posted on 2019-05-21

1340 Selection following gene duplication shapes recent genome evolution in the pea aphid Acyrthosiphon pisum

Fernandez, R.; Marcet-Houben, M.; Legeai, F.; Richard, G.; Robin, S.; Wucher, V.; Pegueroles, C.; Gabaldon, T.; Tagu, D.

10.1101/643544 — genomics — Posted on 2019-05-21

1341 Genetic overlap between psychiatric disorders and neuropsychiatric symptoms in HD

Ellis, N.; Tee, A.; McAllister, B.; Massey, T.; McLauchlan, D.; Stone, T.; Correia, K.; Loupe, J.; Kim, K.-H.; Barker, D.; Hong, E. P.; Chao, M. J.; Long, J. D.; Lucente, D.; Vonsattel, J. P. G.; Mouro Pinto, R.; Elneel, K. A.; Ramos, E. M.; Mysore, J. S.; Gillis, T.; Wheeler, V. C.; Medway, C.; Hall, L.; Kwak, S.; Sampaio, C.; Ciosi, M.; Maxwell, A.; Chatzi, A.; Monckton, D.; Orth, M.; Landwehrmeyer, G. B.; Paulsen, J. S.; Shoulson, I.; Myers, R.; Duijn, E. v.; Rickards, H.; MacDonald, M.; Lee, J.-M.; Gusella, J. F.; Jones, L.; Holmans, P.

10.1101/639658 — genetics — Posted on 2019-05-21

1342 Genome-wide association study of appendicular lean mass in UK Biobank cohort

Pei, Y.-F.; Liu, Y.-Z.; Yang, X.-L.; Zhang, H.; Feng, G.-J.; Zhang, L.

10.1101/643536 — genetics — Posted on 2019-05-21

1343 Cellular and Molecular Probing of Intact Transparent Human Organs

Zhau, S.; Todorov, M. I.; Cai, R.; Steinke, H.; Kemter, E.; Wolf, E.; Lipfert, J.; Bechmann, I.; Erturk, A.

10.1101/643908 — cell biology — Posted on 2019-05-21

1344 Multi-Neuromodulator Measurements across Fronto-Striatal Network Areas of the Behaving Macaque using Solid-Phase Microextraction

Hassani, S.-A.; Lendor, S.; Boyaci, E.; Pawliszyn, J.; Womelsdorf, T.

10.1101/534651 — neuroscience — Posted on 2019-05-20

1345 Is adaptation limited by mutation? A timescale dependent effect of genetic diversity on the adaptive substitution rate in animals.

Rousselle, M.; Simion, P.; Tilak, M.-K.; Figuet, E.; Nabholz, B.; Galtier, N.

10.1101/643619 — evolutionary biology — Posted on 2019-05-20

1346 Metabolic response to Parkinson’s disease recapitulated by the haploinsufficient phenotype of diploid yeast cells hemizygous for the adrenodoxin reductase gene

Dikicioglu, D.; Coxon, J.; Oliver, S.

10.1101/641621 — systems biology — Posted on 2019-05-20

1347 Multiplexed measurement of protein biomarkers in high-frequency longitudinal dried blood spot (DBS) samples: characterization of inflammatory responses

Anderson, N. L.; Razavi, M.; Pope, M. E.; Yip, R.; Pearson, T. W.

10.1101/643239 — systems biology — Posted on 2019-05-20

1348 Interactions between motor thalamic field potentials and single unit spiking predict behavior in rats

Gaidica, M.; Cyr, C.; Hurst, A.; Leventhal, D.

10.1101/642991 — neuroscience — Posted on 2019-05-20

1349 Transplanted cells are essential for the induction but not the expression of cortical plasticity

Hoseini, M.; Rakela, B.; Flores-Ramirez, Q.; Hasenstaub, A. R.; Alvarez-Buylla, A.; Stryker, M.

10.1101/644377 — neuroscience — Posted on 2019-05-20

1350 Predicting individual speech intelligibility from the neural tracking of acoustic- and phonetic-level speech representations

Lesenfants, D.; Vanthornhout, J.; Verschueren, E.; Decruy, L.; Francart, T.

10.1101/471367 — neuroscience — Posted on 2019-05-20

1351 Seven new Neocallimastigomycota genera from fecal samples of wild, zoo-housed, and domesticated herbivores: Description of Ghazallomyces constrictus gen. nov., sp. nov., Aklioshbomyces papillarum gen. nov., sp. nov., Agriosomyces longus gen. nov., sp. nov., Capellomyces foraminis gen. nov., sp. nov. and Capellomyces elongatus sp. nov., Joblinomyces apicalis gen. nov., sp. nov., Khoyollomyces ramosus gen. nov., sp. nov., and Tahromyces munnarensis gen. nov., sp. nov.

Hanafy, R.; Lanjekar, V.; Dhakephalkar, P.; Callaghan, T.; Dagar, S. S.; Griffith, G. W.; Elshahed, M.; Youssef, N. H.

10.1101/642694 — microbiology — Posted on 2019-05-20

1352 A terminal selector prevents a Hox transcriptional switch to safeguard motor neuron identity throughout life

Feng, W.; Li, Y.; Dao, P.; Aburas, J.; Islam, P.; Elbaz, B.; Kolarzyk, A.; Brown, A. E. X.; Kratsios, P.

10.1101/643320 — developmental biology — Posted on 2019-05-20

1353 SNAP23 is required for the maintenance of meiotic arrest and cortical granule exocytosis in mouse oocytes

Mehlmann, L. M.; Uliasz, T. F.; Lowther, K. M.

10.1101/562843 — cell biology — Posted on 2019-05-20

1354 Actin protrusions push on E-cadherin to maintain epithelial cell-cell adhesion

Li, J. X. H.; Tang, V. W.; Brieher, W. M.

10.1101/644302 — cell biology — Posted on 2019-05-20

1355 High-throughput amplicon sequencing of the full-length 16S rRNA gene with single-nucleotide resolution

Callahan, B. J.; Wong, J.; Heiner, C.; Oh, S.; Theriot, C. M.; Gulati, A. S.; McGill, S. K.; Dougherty, M. K.

10.1101/392332 — bioinformatics — Posted on 2019-05-20

1356 Brain activity links performance in science reasoning with conceptual approach

Bartley, J. E.; Riedel, M. C.; Salo, T.; Boeving, E. R.; Bottenhorn, K. L.; Bravo, E. I.; Odean, R.; Nazareth, A.; Laird, R. W.; Sutherland, M. T.; Pruden, S. M.; Brewe, E.; Laird, A. R.

10.1101/526574 — neuroscience — Posted on 2019-05-20

1357 Loss of multiple enzyme activities due to the human genetic variation P284T in NADPH cytochrome P450 oxidoreductase

Parween, S.; Velazquez, M. N. R.; Udhane, S. S.; Kagawa, N.; Pandey, A. V.

10.1101/643825 — pharmacology and toxicology — Posted on 2019-05-20

1358 Software Toolkit for Fast High-Resolution TMS Modeling

Makarov, S. N.; Noetscher, G. M.; Burnham, E. H.; Pham, D. N.; Htet, A. T.; Navarro de Lara, L.; Raij, T.; Nummenmaa, A.

10.1101/643346 — neuroscience — Posted on 2019-05-20

1359 Functional divergence of Plexin B structural motifs in distinct steps of Drosophila olfactory circuit assembly

Guajardo, R.; Luginbuhl, D. J.; Han, S.; Luo, L.; Li, J.

10.1101/643353 — neuroscience — Posted on 2019-05-20

1360 Pericytes regulate vascular immune homeostasis in the CNS

Torok, O.; Schreiner, B.; Tsai, H.-C.; Utz, S.; Schaffenrath, J.; Nassiri, S.; Delorenzi, M.; Aguzzi, A.; Han, M. H.; Greter, M.; Becher, B.; Keller, A.

10.1101/644120 — neuroscience — Posted on 2019-05-20

1361 The balance of interaction types determines the assembly and stability of ecological communities

Qian, J. J.; Akcay, E.

10.1101/643478 — ecology — Posted on 2019-05-20

1362 Categorical Assignment of Pulmonary Embolism is a Simple and More Accurate Indicator of Right Ventricular Dysfunction and Short Team Mortality

Chen, Y. L.; Wright, C.; Pietropaoli, A.; Elbadawi, A.; Delehanty, J.; Barrus, B.; Gosev, I.; Trawick, D.; Patel, D.; Cameron, S.

10.1101/642892 — biochemistry — Posted on 2019-05-20

1363 Guided proposals for efficient weighted stochastic simulation

Gillespie, C. S.; Golightly, A.

10.1101/641894 — systems biology — Posted on 2019-05-20

1364 Neurophysiological alterations in the nucleus reuniens of a mouse model of Alzheimer’s disease

Walsh, D. A.; Brown, J. T.; Randall, A. D.

10.1101/643023 — neuroscience — Posted on 2019-05-20

1365 Characterising the balance between short-interval intracortical inhibition and short-interval intracortical facilitation in younger and older adults.

Rurak, B. K.; Hammond, G. R.; Fujiyama, H.; Vallence, A.-M.

10.1101/643841 — neuroscience — Posted on 2019-05-20

1366 Microbial Food Safety in the Maryland Direct-to-Consumer Poultry Supply Chain

Baron, P.; Love, D.; Ludwig, S.; Dalton, K.; Larsen, J.; Innes, G.; Davis, M.; Heaney, C.

10.1101/643106 — microbiology — Posted on 2019-05-20

1367 Cervical gene delivery of the antimicrobial peptide, Human β-defensin (HBD)-3, in a mouse model of ascending infection-related preterm birth

Suff, N.; Karda, R.; Antinao Diaz, J.; Joanne, N.; Julian, B.; Perocheau, D.; Taylor, P. W.; Alber, D.; Buckley, S. M. K.; Bajaj-Elliott, M.; Waddington, S. N.; Peebles, D.

10.1101/643171 — immunology — Posted on 2019-05-20

1368 Environment but not geography explains genetic variation in the invasive and largely panmictic European starling in North America

Hofmeister, N. R.; Werner, S. J.; Lovette, I. J.

10.1101/643858 — evolutionary biology — Posted on 2019-05-20

1369 Transcriptomic analysis of bone and fibrous tissue morphogenesis during digit tip regeneration in the adult mouse

Qu, F.; Palte, I. C.; Gontarz, P. M.; Zhang, B.; Guilak, F.

10.1101/643361 — developmental biology — Posted on 2019-05-20

1370 A Study of Gestational Diabetes

Banerji, S.

10.1101/643833 — bioinformatics — Posted on 2019-05-20

1371 gwasrapidd: an R package to query, download and wrangle GWAS Catalog data

Magno, R.; Maia, A.-T.

10.1101/643940 — bioinformatics — Posted on 2019-05-20

1372 A ‘Human-in-the-Loop’ Approach for Semi-automated Image Restoration in Electron Microscopy

Roels, J.; Vernaillen, F.; Kremer, A.; Goncalves, A.; Aelterman, J.; Luong, H. Q.; Goossens, B.; Philips, W.; Lippens, S.; Saeys, Y.

10.1101/644146 — bioinformatics — Posted on 2019-05-20

1373 Morphology of the nervous system of monogonont rotifer Epiphanes senta with focus on sexual dimorphism between feeding females and dwarfed males

Gasiorowski, L.; Furu, A. S.; Hejnol, A.

10.1101/643817 — zoology — Posted on 2019-05-20

1374 Cell-free transcriptional regulation via nucleic-acid-based transcription factors

Chou, L.; Shih, W.

10.1101/644021 — synthetic biology — Posted on 2019-05-20

1375 The Relationship between BOLD and Neural Activity Arises from Temporally Sparse Events

Zhang, X.; Pan, W.-J.; Keilholz, S.

10.1101/644419 — neuroscience — Posted on 2019-05-20

1376 Area 2 of primary somatosensory cortex encodes kinematics of the whole arm

Chowdhury, R. H.; Glaser, J. I.; Miller, L. E.

10.1101/643205 — neuroscience — Posted on 2019-05-20

1377 Exploring Contextual Interference in Implicit and Explicit Motor Learning

Dang, K.; Parvin, D.; Ivry, R.

10.1101/644211 — neuroscience — Posted on 2019-05-20

1378 In vitro characterization of the yeast DcpS, a scavenger mRNA decapping enzyme

Wulf, M. G.; Buswell, J.; Chan, S.-H.; Dai, N.; Marks, K.; Martin, E. R.; Tzertzinis, G.; Whipple, J. M.; Correa, I. R.; Schildkraut, I.

10.1101/644492 — molecular biology — Posted on 2019-05-20

1379 Gli3 loss-of-function compromises vomeronasal neurogenesis, formation of olfactory ensheathing cells in the nasal mucosa, and GnRH-1 neuronal migration

Taroc, E. Z. M.; Naik, A.; Lin, J. M.; Peterson, N. B.; Keefe, D. L.; Genis, E.; Fuchs, G.; Balasubramanian, R.; Forni, P. E.

10.1101/643155 — developmental biology — Posted on 2019-05-20

1380 Single-cell analyses reveal aberrant pathways for megakaryocyte-biased hematopoiesis in myelofibrosis and identify mutant clone-specific targets

Psaila, B.; Wang, G.; Rodriguez Meira, A.; Heuston, E. F.; Li, R.; O'Sullivan, J.; Sousos, N.; Anderson, S.; Senis, Y.; Weinberg, O.; Callicchio, M. L.; NIH Intramural Sequencing Core, ; Iskander, D.; Royston, D.; Milojkovic, D.; Roberts, I.; Bodine, D. M.; Thongjuea, S.; Mead, A. J.

10.1101/642819 — cancer biology — Posted on 2019-05-20

1381 Context-Aware Seeds for Read Mapping

Xin, H.; Shao, M.; Kingsford, C.

10.1101/643072 — bioinformatics — Posted on 2019-05-20

1382 A comparison of automatic cell identification methods for single-cell RNA-sequencing data

Abdelaal, T.; Michielsen, L.; Cats, D.; Hoogduin, D.; Mei, H.; Reinders, M.; Mahfouz, A.

10.1101/644435 — bioinformatics — Posted on 2019-05-20

1383 Benchmarking workflows to assess performance and suitability of germline variant calling pipelines in clinical diagnostic assays.

Utiramerur, S.; Krishnan, V.; Ng, Z.; Datta, S.; Synder, M.; Ashley, E.

10.1101/643163 — bioinformatics — Posted on 2019-05-20

1384 A theory of learning to infer

Dasgupta, I.; Schulz, E.; Tenenbaum, J. B.; Gershman, S. J.

10.1101/644534 — animal behavior and cognition — Posted on 2019-05-20

1385 Unique Transcription Factor Functions Regulate Epigenetic and Transcriptional Dynamics During Cardiac Reprogramming

Stone, N. R.; Gifford, C. A.; Thomas, R.; Pratt, K. J. B.; Samse-Knapp, K.; Mohamed, T. M. A.; Radzinsky, E. M.; Schricker, A.; Yu, P.; Ivey, K. N.; Pollard, K. S.; Srivastava, D.

10.1101/642900 — molecular biology — Posted on 2019-05-20

1386 A Novel Method for Calculating Mean Erythrocyte Age Using Erythrocyte Creatine

Kameyama, M.; Koga, M.; Okumiya, T.

10.1101/642942 — physiology — Posted on 2019-05-20

1387 Site-specific effects of online rTMS during a working memory task in healthy older adults.

Beynel, L.; Davis, S. W.; Crowell, C. A.; Dannhauer, M.; Lim, W.; Palmer, H.; Hilbig, S. A.; Brito, A.; Hile, C.; Luber, B.; Lisanby, S. H.; Peterchev, A. V.; Cabeza, R.; Appelbaum, L. G.

10.1101/642983 — neuroscience — Posted on 2019-05-20

1388 Redundant and specific roles of cohesin STAG subunits in chromatin looping and transcription control

Casa, V.; Moronta Gines, M.; Gade Gusmao, E.; Slotman, J. A.; Zirkel, A.; Josipovic, N.; Oole, E.; van IJcken, W. F. J.; Houtsmuller, A. B.; Papantonis, A.; Wendt, K. S.

10.1101/642959 — cell biology — Posted on 2019-05-20

1389 Record highest mesophotic fish diversity found in Raja Ampat

Andradi-Brown, D. A.; Beer, A. J. E.; Colin, L.; Head, C. E. I.; Hidayat, N. I.; Lindfield, S. J.; Mitchell, C. R.; Pada, D. N.; Piesinger, N. M.; Purwanto, ; Sabrang, H.; Ahmadia, G. N.

10.1101/640490 — ecology — Posted on 2019-05-20

1390 The Importance of Mesozooplankton Diel Vertical Migration for Sustaining a Mesopelagic Food Web

Kelly, T.; Davison, P. C.; Georicke, R.; Landry, M. R.; Ohman, M. D.; Stukel, M. R.

10.1101/642975 — ecology — Posted on 2019-05-20

1391 Acute inflammation alters energy metabolism in mice and humans: Role in sickness-induced hypoactivity, impaired cognition and delirium.

Kealy, J.; Murray, C.; Griffin, E. W.; Lopez-Rodriguez, A. B.; Healy, D.; Tortorelli, L. S.; Lowry, J. P.; Watne, L. O.; Cunningham, C.

10.1101/642967 — neuroscience — Posted on 2019-05-20

1392 Mitochondrial DNA has strong selective effects across the nuclear genome

Healy, T. M.; Burton, R. S.

10.1101/643056 — evolutionary biology — Posted on 2019-05-20

1393 Incorporating adaptation in object recognition models captures temporal dynamics in neurophysiology and perception

Vinken, K.; Boix, X.; Kreiman, G.

10.1101/642777 — neuroscience — Posted on 2019-05-20

1394 Aversive Learning Enhances Neurotransmitter Release from Olfactory Sensory Neurons

Bhattarai, J. P.; Schreck, M.; Moberly, A. H.; Luo, W.; Ma, M.

10.1101/642751 — neuroscience — Posted on 2019-05-20

1395 White Matter Connectometry Among Individuals with Self-Reported Family History of Drug and Alcohol Use Disorders

Waters, A. B.; Sawyer, K. S.; Gansler, D. A.

10.1101/644054 — neuroscience — Posted on 2019-05-20

1396 The Psychological and Physiological Part of Emotions: Multimodal Approximation for Valence Classification

Sorinas Nerin, J.; Ferrandez, J. M.; Fernandez, E.

10.1101/638239 — neuroscience — Posted on 2019-05-20

1397 Huntington phosphorylation governs BDNF homeostasis and improves the phenotype of Mecp2 knockout mice

Ehinger, Y.; Bruyere, j.; Panayotis, N.; Abada, Y.-S.; Saidi, L.; Matagne, V.; Scaramuzzino, C.; Vitet, H.; Benoit Delatour, B.; Villard, L.; Saudou, F.; Roux, J.-C.

10.1101/643312 — neuroscience — Posted on 2019-05-20

1398 Fcrl5 and T-bet define influenza-specific memory B cells that predict long-lived antibody responses

Nellore, A.; Scharer, C. D.; King, R. G.; Tipton, C. M.; Zumaquero, E.; Fucile, C.; Mousseau, B.; Bradley, J. E.; Macon, K.; Mi, T.; Goepfert, P. A.; Kearney, J. F.; Boss, J. M.; Randall, T. D.; Sanz, I.; Rosenberg, A.; Lund, F. E.

10.1101/643973 — immunology — Posted on 2019-05-20

1399 Mitochondrial morphology provides a mechanism for energy buffering at synapses

Garcia, G. C.; Bartol, T. M.; Phan, S.; Bushong, E. A.; Perkins, G.; Sejnowski, T. J.; Ellisman, M. H.; Skupin, A.

10.1101/643551 — biophysics — Posted on 2019-05-20

1400 Entropic regulation of dynamical metabolic processes

Adler, S. O.; Klipp, E.

10.1101/643601 — biophysics — Posted on 2019-05-20

1401 Fast, Efficient, and Precise Gene Editing in the Moss Physcomitrella patens

Yi, P.; Goshima, G.

10.1101/643692 — plant biology — Posted on 2019-05-20

1402 Single-cell RNA-seq analysis reveals the crucial role of Collagen Triplex Helix Repeat Containing 1 (CTHRC1) cardiac fibroblasts for ventricular remodeling after myocardial infarction

Ruiz-Villalba, A.; Romero, J. P.; Hernandez, S. C.; Vilas-Zornoza, A.; Fortelny, N.; Castro, L.; San Martin-Uriz, P.; Lorenzo-Vivas, E.; Garcia-Olloqui, P.; Palacios, M.; Gavira, J. J.; Bastarrika, G.; Janssens, S.; Iglesias, E.; Abizanda, G.; Martinez de Morentin, X.; Bock, C.; Alignani, D.; Medal, G.; Gomez-Cabrero, D.; Prudovsky, I.; Jin, Y.-R.; Ryzkov, S.; Yin, H.; Pelacho, B.; Lindner, V.; Lara-Astiaso, D.; Prosper, F.

10.1101/643130 — cell biology — Posted on 2019-05-20

1403 In vivo imaging of myonuclei during spontaneous muscle contraction reveals non-uniform nuclear mechanical dynamics in Nesprin/klar mutants

Lorber, D.; Rotkopf, R.; Volk, T.

10.1101/643015 — biophysics — Posted on 2019-05-20

1404 A prospectively validated machine learning model for the prediction of survival and tumor subtype in pancreatic ductal adenocarcinoma

Kaissis, G.; Ziegelmayer, S.; Lohoefer, F.; Alguel, H.; Eiber, M.; Weichert, W.; Schmid, R.; Friess, H.; Rummeny, E.; Ankerst, D.; Siveke, J.; Braren, R.

10.1101/643809 — bioinformatics — Posted on 2019-05-20

1405 MONET: MOdularising NEtwork Toolbox for mining of molecular and genetic networks

Tomasoni, M.; Gomez, S.; Crawford, J.; Zhang, W.; Choobda, S.; Marbach, D.; Bergmann, S.

10.1101/611418 — bioinformatics — Posted on 2019-05-20

1406 Music perception in acquired prosopagnosia: An anterior temporal syndrome for faces, voices, and music

Barton, J. J. S.; Stubbs, J. L.; Paquette, S.; Duchaine, B.; Schlaug, G.; Corrow, S. L.

10.1101/640748 — neuroscience — Posted on 2019-05-20

1407 One-year descriptive analysis of patients treated at an anti-rabies clinic - a retrospective study from Kashmir

Bashir, K.; Haq, I.; Qurieshi, M. A.; Khan, S. M. S.

10.1101/644393 — epidemiology — Posted on 2019-05-20

1408 Insights into the stability of a therapeutic antibody Fab fragment by molecular dynamics and its stabilization by computational design

Codina, N.; Zhang, C.; Chakroun, N.; Dalby, P.

10.1101/644369 — biophysics — Posted on 2019-05-20

1409 Generation of strong casein kinase 1 inhibitor of Arabidopsis thaliana

Saito, A. N.; Matsuo, H.; Kuwata, K.; Ono, A.; Kinoshita, T.; Yamaguchi, J.; Nakamichi, N.

10.1101/642884 — plant biology — Posted on 2019-05-20

1410 Left parietal tACS at alpha frequency induces a shift of visuospatial attention

Schuhmann, T.; Kemmerer, S. K.; Duecker, F.; de Graaf, T. A.; ten Oever, S.; De Weerd, P.; Sack, A. T.

10.1101/644237 — neuroscience — Posted on 2019-05-20

1411 Robinson-Foulds Reticulation Networks

Markin, A.; Anderson, T. K.; Vadali, V. S.; Eulenstein, O.

10.1101/642793 — evolutionary biology — Posted on 2019-05-20

1412 Variation in neotropical river otter (Lontra longicaudis) diet: Effects of an invasive prey species.

Juarez-Sanchez, D.; Blake, J. G.; Hellgren, E. C.

10.1101/644203 — ecology — Posted on 2019-05-20

1413 Stirred Suspension Bioreactor Culture of Porcine Induced Pluripotent Stem Cells

Burrell, K.; Dardari, R.; Toms, D.; Goldsmith, T.; Villagomez, D.; King, A.; Ungrin, M.; Dobrinski, I.

10.1101/644195 — cell biology — Posted on 2019-05-20

1414 Benchmarking algorithms for gene regulatory network inference from single-cell transcriptomic data

Pratapa, A.; Jalihal, A.; Law, J. N.; Bharadwaj, A.; Murali, T. M.

10.1101/642926 — bioinformatics — Posted on 2019-05-20

1415 A diversity of traits contributes to salinity tolerance of wild Galapagos tomatoes seedlings

Pailles, Y.; Awlia, M.; Julkowska, M.; Passone, L.; Zemmouri, K.; Negrao, S.; Schmoeckel, S. M.; Tester, M.

10.1101/642876 — plant biology — Posted on 2019-05-20

1416 CD8+ T cell immunity is compromised by anti-CD20 treatment and rescued by IL-17A

Fiocca Vernengo, F.; Beccaria, C. G.; Araujo Furlan, C. L.; Tosello Boari, J.; Almada, L.; Gorosito Serran, M.; Gazzoni, Y.; Montes, C. L.; Acosta Rodriguez, E.; Gruppi, A.

10.1101/642801 — immunology — Posted on 2019-05-20

1417 Thymically-derived Foxp3+ regulatory T cells are the primary regulators of type 1 diabetes in the non-obese diabetic mouse model

Holohan, D. R.; Van Gool, F.; Bluestone, J. A.

10.1101/644229 — immunology — Posted on 2019-05-20

1418 A 3500-year-old leaf from a Pharaonic tomb reveals that New Kingdom Egyptians were cultivating domesticated watermelon

Renner, S. S.; Perez, O.; Silber, M. V.; Nesbitt, M.; Preick, M.; Hofreiter, M.; Chomicki, G.

10.1101/642785 — evolutionary biology — Posted on 2019-05-20

1419 To Tweet or Not to Tweet, That is the Question: A Randomized Trial of Twitter Effects on Article Engagement in Medical Education

Maggio, L. A.; Leroux, T. C.; Artino, A. R.

10.1101/642769 — scientific communication and education — Posted on 2019-05-20

1420 miRNA-encoded peptide, miPEP858, regulates plant growth and development in Arabidopsis

Sharma, A.; Badola, P. K.; Bhatia, C.; Sharma, D.; Trivedi, P. K.

10.1101/642561 — plant biology — Posted on 2019-05-20

1421 The drift diffusion model as the choice rule in inter-temporal and risky choice: a case study in medial orbitofrontal cortex lesion patients and controls.

Peters, J.; D'Esposito, M.

10.1101/642587 — neuroscience — Posted on 2019-05-20

1422 Decoupling of inter-regional functional connectivity and regional neural activity in Alzheimer Disease

Maleki-Balajoo, S.; Rahmani, F.; Khosrowabadi, R.; Meng, C.; Grimmer, T.; Drzezga, A.; Zarei, M.; Sorg, C.; Tahmasian, M.

10.1101/642629 — neuroscience — Posted on 2019-05-20

1423 Seven new Neocallimastigomycota genera from fecal samples of wild, zoo-housed, and domesticated herbivores: Description of Ghazallomyces constrictus gen. nov., sp. nov., Aklioshbomyces papillarum gen. nov., sp. nov., Agriosomyces longus gen. nov., sp. nov., Capellomyces foraminis gen. nov., sp. nov. and Capellomyces elongatus sp. nov., Joblinomyces apicalis gen. nov., sp. nov., Khoyollomyces ramosus gen. nov., sp. nov., and Tahromyces munnarensis gen. nov., sp. nov.

Hanafy, R.; Lanjekar, V.; Dhakephalkar, P.; Callaghan, T.; Dagar, S. S.; Griffith, G. W.; Elshahed, M.; Youssef, N. H.

10.1101/642694 — microbiology — Posted on 2019-05-20

1424 Precision Genome Editing Using Bacteriophage-derived Peptides

Cui, Y.; Wang, S.; Chen, J.; Li, J.; Chen, W.; Wang, S.; Meng, B.; Zhu, W.; Zhang, Z.; Yang, B.; Jiang, B.; Yang, G.; Ma, P.; Liu, J.

10.1101/642538 — genomics — Posted on 2019-05-20

1425 Identifying dynamic, partially occupied residues using anomalous scattering

Rocchio, S.; Duman, R.; El Omari, K.; Mykhaylyk, V.; Yan, Z.; Wagner, A.; Bardwell, J. C. A.; Horowitz, S.

10.1101/642686 — biophysics — Posted on 2019-05-20

1426 Performance Evaluation of Traditional Signal Processing Methods in Localizing Tursiops truncatus Whistles in a Reverberant Aquatic Environment

Woodward, S. F.; Magnasco, M.

10.1101/642736 — biophysics — Posted on 2019-05-20

1427 Structural analysis of de novo STXBP1 mutation in complex with syntaxin 1A reveals a major alteration in the interaction interface in a child with developmental delay and spasticity

Banne, E.; Falik-Zaccai, T.; Brielle, E.; Kalfon, L.; Ladany, H.; Klinger, D.; Schneidman-Duhovny, D.; Linial, M.

10.1101/642702 — genetics — Posted on 2019-05-20

1428 Reconstructing wells from high density regions extracted from super-resolution single particle trajectories

Parutto, P.; Heck, J.; Heine, M.; Holcman, D.

10.1101/642744 — biophysics — Posted on 2019-05-20

1429 Benchmarking of computational error-correction methods for next-generation sequencing via unique molecular identifiers

Mitchell, K.; Mandric, I.; Martin, L.; Pop, M.; Mangul, S.

10.1101/642843 — bioinformatics — Posted on 2019-05-20

1430 Overcoming Immunological Resistance Enhances the Efficacy of a Novel anti-tMUC1 CAR T Cell Treatment Against Pancreatic Ductal Adenocarcinoma

Yazdanifar, M.; Zhou, R.; Grover, P.; Williams, C.; Bose, M.; Moore, L. J.; Wu, S.-t.; Chi, R.; Maher, J.; Dreau, D.; Mukherjee, P.

10.1101/642934 — cancer biology — Posted on 2019-05-20

1431 Benchmarking principal component analysis for large-scale single-cell RNA-sequencing

Tsuyuzaki, K.; Sato, H.; Sato, K.; Nikaido, I.

10.1101/642595 — bioinformatics — Posted on 2019-05-20

1432 SAFEPPP: a Simple And Fast method to Find and analyze Extreme Points of a metabolic Phenotypic Phase Plane

Moteallehi-Ardakani, M. H.; Marashi, S.-A.

10.1101/642363 — systems biology — Posted on 2019-05-20

1433 Dynamic DNA structure states interact with the RNA editing enzyme ADAR1 to modulate fear extinction memory

Marshall, P.; Zhao, Q.; Li, X.; Wei, W.; Periyakaruppiah, A.; Zajaczkowski, E.; Leighton, L.; Madugalle, S.; Basic, D.; Wang, Z.; Yin, J.; Liau, W.-S.; Walkley, C.; Bredy, T.

10.1101/641209 — neuroscience — Posted on 2019-05-20

1434 Single-cell transcriptomics reveals expansion of cytotoxic CD4 T-cells in supercentenarians

Hashimoto, K.; Kouno, T.; Ikawa, T.; Hayatsu, N.; Miyajima, Y.; Yabukami, H.; Terooatea, T.; Sasaki, T.; Suzuki, T.; Valentine, M.; Pascarella, G.; Okazaki, Y.; Suzuki, H.; Shin, J. W.; Minoda, A.; Taniuchi, I.; Okano, H.; Arai, Y.; Hirose, N.; Carninci, P.

10.1101/643528 — immunology — Posted on 2019-05-20

1435 Boat anchors not OK: Loss of Dugong grass (Halophila ovalis) population structure in Havelock island of Andaman and Nicobar Islands, India

Mishra, A. K.; Narayana, S.; Apte, D.

10.1101/642579 — ecology — Posted on 2019-05-20

1436 Unique and redundant roles of SOX2 and SOX17 in regulating the germ cell tumour fate

Jostes, S.; Fellermeyer, M.; Merges, G.; Kristiansen, G.; Nettersheim, D.; Schorle, H.

10.1101/643114 — cancer biology — Posted on 2019-05-20

1437 Is it time to replace gzip? Comparison of modern compressors for molecular sequence databases

Kryukov, K.; Ueda, M. T.; Nakagawa, S.; Imanishi, T.

10.1101/642553 — bioinformatics — Posted on 2019-05-20

1438 Oligonucleotide Length Determines Intracellular Stability of DNA-Wrapped Carbon Nanotubes

Gravely, M.; Safaee, M. M.; Roxbury, D.

10.1101/642413 — bioengineering — Posted on 2019-05-20

Etzel, J.; Courtney, Y.; Carey, C. E.; Agrawal, A.; Braver, T. S.

10.1101/642397 — neuroscience — Posted on 2019-05-20

1440 A New Minimally Invasive Technique for Repairing Achilles Tendon Rupture: A Biomechanical Study

Peng, Z.; Dawei, S.; Yarun, X.; Ribo, Z.

10.1101/642520 — biochemistry — Posted on 2019-05-20

1441 Unique axon-to-soma signaling pathways mediate dendritic spine loss and hyper-excitability post-axotomy

Nagendran, T.; Taylor, A. M.

10.1101/642207 — neuroscience — Posted on 2019-05-20

1442 Older adults benefit from more widespread brain network integration during working memory

Crowell, C. A.; Davis, S. W.; Beynel, L.; Deng, L.; Lakhlani, D.; Hilbig, S.; Palmer, H.; Wang, J.; Peterchev, A.; Luber, B.; Lisanby, S. H.; Appelbaum, L. G.; Cabeza, R.

10.1101/642447 — neuroscience — Posted on 2019-05-20

1443 Complete genome assembly of clinical multidrug resistant Bacteroides fragilis isolates enables comprehensive identification of antimicrobial resistance genes and plasmids

Sydenham, T. V.; Overballe-Pedersen, S.; Hasman, H.; Wexler, H.; Kemp, M.; Justesen, U. S.

10.1101/633602 — microbiology — Posted on 2019-05-20

1444 Extensive Transcriptional and Translational Regulation Occur During the Maturation of Malaria Parasite Sporozoites

Lindner, S. E.; Swearingen, K. E.; Shears, M. J.; Walker, M. P.; Vrana, E. N.; Hart, K. J.; Minns, A. M.; Sinnis, P.; Moritz, R. L.; Kappe, S. H.

10.1101/642298 — microbiology — Posted on 2019-05-20

1445 Single cell RNA-seq in regenerative and fibrotic biomaterial environments defines new macrophage subsets

Sommerfeld, S. D.; Cherry, C.; Schwab, R. M.; Chung, L.; Maestas, D. R.; Laffont, P.; Stein, J. E.; Tam, A.; Housseau, F.; Taube, J. M.; Pardoll, D. M.; Cahan, P.; Elisseeff, J. H.

10.1101/642389 — immunology — Posted on 2019-05-20

1446 Spring Model - chromatin modeling tool based on OpenMM

Kadlof, M.; Rozycka, J.; Plewczynski, D.

10.1101/642322 — genomics — Posted on 2019-05-20

1447 DeepFly3D: A deep learning-based approach for 3D limb and appendage tracking in tethered, adult Drosophila

Günel, S.; Rhodin, H.; Morales, D.; Campagnolo, J.; Ramdya, P.; Fua, P.

10.1101/640375 — animal behavior and cognition — Posted on 2019-05-20

1448 Force-based assessment captures unseen changes in normal and abnormal arm motion

Thomas, A. B.; Olesh, E. V.; Adcock, A.; Gritsenko, V.

10.1101/642272 — neuroscience — Posted on 2019-05-20

1449 A Kuramoto model of self-other integration across interpersonal synchronization strategies

Heggli, O. A.; Cabral, J.; Konvalinka, I.; Vuust, P.; Kringelbach, M. L.

10.1101/640383 — neuroscience — Posted on 2019-05-20

1450 Selective integration during sequential sampling in posterior neural signals

Luyckx, F.; Spitzer, B.; Blangero, A.; Tsetsos, K.; Summerfield, C.

10.1101/642371 — neuroscience — Posted on 2019-05-20

1451 Neural dynamics indicate parallel integration of environmental and self-motion information by place and grid cells.

Laptev, D.; Burgess, N.

10.1101/640144 — neuroscience — Posted on 2019-05-20

1452 Pregnancy reprograms the enhancer landscape of mammary epithelial cells and alters the response to cMYC-driven oncogenesis

Feigman, M. J.; Moss, M. A.; Chen, C.; Cyrill, S. L.; Ciccone, M.; Frey, W. D.; Yang, S. T.; Wilkinson, J. E.; dos Santos, C. O.

10.1101/642330 — molecular biology — Posted on 2019-05-20

1453 Insights from the revised complete genome sequences of Acinetobacter baumannii strains AB307-0294 and ACICU belonging to global clone 1 and 2

Hamidian, M.; Wick, R.; Hartstein, R. M.; Judd, L. M.; Holt, K.; Hall, R. M.

10.1101/641779 — microbiology — Posted on 2019-05-20

1454 Genome-wide identification of Pseudomonas syringae genes required for competitive fitness during colonization of the leaf surface and apoplast

Helmann, T. C.; Deutschbauer, A. M.; Lindow, S. E.

10.1101/637496 — microbiology — Posted on 2019-05-20

1455 Insufficiency in airway interferon activation defines clinical severity to infant RSV infection

Chu, C.-Y.; Qiu, X.; McCall, M. N.; Wang, L.; Corbett, A.; Holden-Wiltse, J.; Slaunwhite, C.; Wang, Q.; Anderson, C.; Grier, A.; Gill, S. R.; Pryhuber, G. S.; Falsey, A. R.; Topham, D. J.; Caserta, M. T.; Walsh, E. E.; Mariani, T. J.

10.1101/641795 — genomics — Posted on 2019-05-20

1456 Single molecule analysis of effects of non-canonical guide RNAs and specificity-enhancing mutations on Cas9-induced DNA unwinding

Okafor, I.; Singh, D.; Wang, Y.; Jung, M.; Wang, H.; Mallon, J.; Bailey, S.; Lee, J. K.; Ha, T.

10.1101/642223 — biophysics — Posted on 2019-05-20

1457 High-throughput microfluidic micropipette aspiration device to probe time-scale dependent nuclear mechanics in intact cells

Davidson, P.; Fedorchak, G.; Mondesert-Deveraux, S.; Bell, E.; Isermann, P.; Aubry, D.; Allena, R.; Lammerding, J.

10.1101/641084 — biophysics — Posted on 2019-05-20

1458 dearseq: a variance component score test for RNA-Seq differential analysis that effectively controls the false discovery rate

Gauthier, M.; Agniel, D.; Thiebaut, R.; Hejblum, B.

10.1101/635714 — bioinformatics — Posted on 2019-05-20

1459 UHPLC/MS based large-scale targeted metabolomics method for multiple-biological matrix assay

Luo, X.; Zhang, A.; Wang, X.; Lu, H.

10.1101/642496 — biochemistry — Posted on 2019-05-20

1460 Culturable diversity of Arctic phytoplankton during pack ice melting

Gerikas Ribeiro, C.; Lopes dos Santos, A.; Gourvil, P.; Le Gall, F.; Marie, D.; Tragin, M.; Probert, I.; Vaulot, D.

10.1101/642264 — ecology — Posted on 2019-05-20

1461 Curious connections: white matter pathways supporting individual differences in epistemic and perceptual curiosity

Valji, A.; Priemysheva, A.; Hodgetts, C. J.; Costigan, A. G.; Parker, G. D.; Graham, K. S.; Lawrence, A. D.; Gruber, M. J.

10.1101/642165 — neuroscience — Posted on 2019-05-20

1462 Spatiotemporal limits of optogenetic manipulations in cortical circuits

Li, N.; Chen, S.; Guo, Z. V.; Chen, H.; Huo, Y.; Inagaki, H.; Davis, C.; Hansel, D.; Guo, C.; Svoboda, K.

10.1101/642215 — neuroscience — Posted on 2019-05-20

1463 Transcriptome-wide association study of attention deficit hyperactivity disorder identifies associated genes and phenotypes

Liao, C.; Dionne-Laporte, A.; Spiegelman, D.; Akcimen, F.; Joober, R.; DIon, P. A.; Rouleau, G.

10.1101/642231 — genetics — Posted on 2019-05-20

1464 Microbial networks inferred from metabarcoding data lack replicability: consequences for next-generation biomonitoring

Pauvert, C.; Vallance, J.; Deliere, L.; Buee, M.; Vacher, C.

10.1101/642199 — ecology — Posted on 2019-05-20

1465 Dynamic simulations of transcriptional control during cell reprogramming reveal spatial chromatin caging

Di Stefano, M.; Stad, R. S.; Farabella, I.; Castillo, D.; Serra, F.; Graf, T.; Marti-Renom, M. A.

10.1101/642009 — bioinformatics — Posted on 2019-05-20

1466 Direct prediction of regulatory elements from partial data without imputation

Zhang, Y.; Mahony, S.

10.1101/643486 — bioinformatics — Posted on 2019-05-20

1467 A general LC/MS-based RNA sequencing method for direct analysis of multiple-base modifications in RNA mixtures

Zhang, N.; Shi, S.; Jia, T. Z.; Ziegler, A.; Yoo, B.; Yuan, X.; Li, W.; Zhang, S.

10.1101/643387 — biochemistry — Posted on 2019-05-20

1468 Estimating MIC distributions and cutoffs through mixture models: an application to establish M. Tuberculosis resistance.

GRAZIAN, C.

10.1101/643429 — microbiology — Posted on 2019-05-20

1469 Jasmonate-regulated ERF109-MYB51-MYC3 ternary complexes control indolic glucosinolates biosynthesis

Zhang, K.; Meng, Y.; li, j.; Ding, M.; Khurshid, M.; Li, Q.; Lu, X.; Zhou, M.

10.1101/643494 — bioengineering — Posted on 2019-05-20

1470 Increasing plant group productivity through latent genetic variation for cooperation

Wuest, S. E.; Pires, N. D.; Luo, S.; Vasseur, F.; Messier, J.; Grossniklaus, U.; Niklaus, P. A.

10.1101/641449 — plant biology — Posted on 2019-05-19

1471 Knowledge-guided analysis of ‘omics’ data using the KnowEnG cloud platform

Blatti, C.; Emad, A.; Berry, M. J.; Gatzke, L.; Epstein, M.; Lanier, D.; Rizal, P.; Ge, J.; Liao, X.; Sobh, O.; Lambert, M.; Post, C. S.; Xiao, J.; Groves, P.; Epstein, A. T.; Chen, X.; Srinivasan, S.; Lehnert, E.; Kalari, K. R.; Wang, L.; Weinshilboum, R. M.; Song, J. S.; Jongeneel, C. V.; Han, J.; Ravaioli, U.; Sobh, N.; Bushell, C. B.; Sinha, S.

10.1101/642124 — cancer biology — Posted on 2019-05-19

1472 Analysis of Heterogeneous Genomic Samples Using Image Normalization and Machine Learning

Basodi, S.; Icer Baykal, P.; Zelikovsky, A.; Skums, P.; Pan, Y.

10.1101/642108 — bioinformatics — Posted on 2019-05-19

1473 Gateway mechanism confers ultrasensitivity on motor’s function

Afanzar, O.; Di Paolo, D.; Eisenstein, M.; Levi, K.; Plochowietz, A.; Kapanidis, A. N.; Berry, R. M.; Eisenbach, M.

10.1101/642140 — microbiology — Posted on 2019-05-19

1474 BiocPkgTools: Toolkit for Mining the Bioconductor Package Ecosystem

Su, S.; Carey, V. J.; Shepherd, L.; Ritchie, M. E.; Morgan, M. T.; Davis, S. R.

10.1101/642132 — bioinformatics — Posted on 2019-05-19

1475 Thermal cycling-hyperthermia in combination with polyphenols, epigallocatechin gallate and chlorogenic acid, exerts synergistic anticancer effect against human pancreatic cancer PANC-1 cells

Lu, C.-H.; Chen, W.-T.; Hsieh, C.-H.; Kuo, Y.-Y.; Chao, C.-Y.

10.1101/548552 — cancer biology — Posted on 2019-05-19

1476 Filament extensibility and shear stiffening control persistence of strain and loss of coherence in cross-linked motor-filament assemblies

Gopinath, A.; Chelakkot, R.; Mahadevan, L.

10.1101/423582 — biophysics — Posted on 2019-05-19

1477 Antibiotic interactions shape short-term evolution of resistance in E. faecalis

Dean, Z.; Maltas, J.; Wood, K. B.

10.1101/641217 — evolutionary biology — Posted on 2019-05-19

1478 OLIVER: A Tool for Visual Data Analysis on Longitudinal Plant Phenomics Data

Tessmer, O. L.; Kramer, D. M.; Chen, J.

10.1101/411595 — bioinformatics — Posted on 2019-05-19

1479 Comparative analysis of neuroinvasion by Japanese encephalitis virulent and vaccine strains in an in cellulo model of human blood-brain barrier

Khou, C.; Diaz-Salinas, M. A.; da Costa, A.; Prehaud, C.; Jeannin, P.; Afonso, P.; Vignuzzi, M.; Lafon, M.; Pardigon, N.

10.1101/642033 — microbiology — Posted on 2019-05-19

1480 Global distribution and evolution of Mycobacterium bovis lineages

Kraemer Zimpel, C.; Patane, J. S. L.; Guedes, A. C. P.; de Souza, R. F.; Pereira-Silva, T. T.; Soler Camargo, N. C.; de Souza Filho, A. F.; Ikuta, C. Y.; Ferreira Neto, J. S.; Setubal, J. C.; Heinemann, M. B.; Guimaraes, A. M. d. S.

10.1101/642066 — genetics — Posted on 2019-05-19

1481 Accuracy of robotic coil positioning during transcranial magnetic stimulation

Goetz, S. M.; Kozyrkov, I. C.; Luber, B.; Lisanby, S. H.; Murphy, D. L. K.; Grill, W. M.; Peterchev, A. V.

10.1101/641456 — neuroscience — Posted on 2019-05-19

1482 Creatine transporter knockout mice (Slc6a8) show increases in serotonin-related proteins and are resilient to learned helplessness

Abdulla, Z.; Pennington, J.; Gutierrez, A.; Skelton, M.

10.1101/641845 — animal behavior and cognition — Posted on 2019-05-19

1483 Microbial evolution reshapes soil carbon feedbacks to climate change

Abs, E.; Saleska, S.; Ferriere, R.

10.1101/641399 — ecology — Posted on 2019-05-19

1484 Simple rules govern the diversity of bacterial nicotianamine-like metallophores

Laffont, C.; Brutesco, C.; Hajjar, C.; Cullia, G.; Fanelli, R.; Ouerdane, L.; Cavelier, F.; Arnoux, P.

10.1101/641969 — biochemistry — Posted on 2019-05-19

1485 Gut microbiome activity contributes to individual variation in glycemic response in adults

Tily, H.; Perlina, A.; Patridge, E.; Gline, S.; Genkin, M.; Gopu, V.; Lindau, H.; Sjue, A.; Klitgord, N.; Vuyisich, M.; Messier, H.; Banavar, G. S.

10.1101/641019 — systems biology — Posted on 2019-05-19

1486 Ex vivo 1H-MRS brain metabolic profiling in a two-hit model of schizophrenia-related alterations: effects of prenatal immune activation and peripubertal stress.

Capellan, R.; Moreno, M.; Orihuel, J.; Roura-Martinez, D.; Ucha, M.; Ambrosio, E.; Higuera-Matas, A.

10.1101/641761 — neuroscience — Posted on 2019-05-19

1487 Caffeine-dependent changes of sleep-wake regulation: evidence for adaptation after repeated intake

Weibel, J.; Lin, Y.-S.; Landolt, H.-P.; Garbazza, C.; Kolodyazhniy, V.; Kistler, J.; Rehm, S.; Rentsch, K.; Borgwardt, S.; Cajochen, C.; Reichert, C.

10.1101/641480 — neuroscience — Posted on 2019-05-19

1488 Regulation of the Erythrobacter litoralis DSM 8509 general stress response by visible light

Fiebig, A.; Varesio, L. M.; Alejandro Navarreto, X.; Crosson, S.

10.1101/641647 — microbiology — Posted on 2019-05-19

1489 Casilio-ME: Enhanced CRISPR-based DNA demethylation by RNA-guided coupling methylcytosine oxidation and DNA repair pathways

Taghbalout, A.; Du, M.; Jillette, N.; Rosikiewicz, W.; Rath, A.; Heinen, C. D.; Li, S.; Cheng, A. W.

10.1101/641993 — genomics — Posted on 2019-05-19

1490 Male sex exacerbates the plasticity and pathogenicity of Th17 cells in a chronic model of CNS autoimmunity.

Doss, P. M. I. A.; Baillargeon, J.; Yeola, A. P.; Williams, J. B.; Leclercq, M.; Joly-Beauparlant, C.; Alpaugh, M.; Anderson, A. C.; Droit, A.; Lassmann, H.; Moore, C. S.; Rangachari, M.

10.1101/640904 — immunology — Posted on 2019-05-19

1491 Physiological determinants of the increase in oxygen consumption during exercise in individuals with stroke

Oyake, K.; Baba, Y.; Ito, N.; Suda, Y.; Murayama, J.; Mochida, A.; Kondo, K.; Otaka, Y.; Momose, K.

10.1101/641522 — physiology — Posted on 2019-05-19

1492 Divergent paths to seizure-like events.

Codadu, N. K.; Graham, R.; Burman, R. J.; Jackson-Taylor, R. T.; Raimondo, J. V.; Trevelyan, A. J.; Parrish, R. R.

10.1101/641530 — neuroscience — Posted on 2019-05-19

1493 A likelihood method for estimating present-day human contamination in ancient DNA samples using low-depth haploid chromosome data

Moreno-Mayar, J. V.; Korneliussen, T. S.; Albrechtsen, A.; Dalal, J.; Renaud, G.; Nielsen, R.; Malaspinas, A.-S.

10.1101/594481 — genomics — Posted on 2019-05-19

1494 In the presence of population structure: From genomics to candidate genes underlying local adaptation

Price, N.; Lopez, L.; Platts, A. E. E.; Lasky, J. R.; McKay, J. K.

10.1101/642306 — evolutionary biology — Posted on 2019-05-19

1495 Using Earth Mover’s Distance for Viral Outbreak Investigations

Melnyk, A.; Knyazev, S.; Vannberg, F.; Bunimovich, L.; Skums, P.; Zelikovsky, A.

10.1101/628859 — bioinformatics — Posted on 2019-05-19

1496 PATHWAYS ANALYZER: Design of a Tool for the Synthetic Assembly of Escherichia Coli K-12 MG1655 Bacteria for Biofuel Production

Vasquez, L.; Alvarado, R.; Orozco, A.

10.1101/634998 — synthetic biology — Posted on 2019-05-19

1497 Treatment-Specific Composition of Gut Microbiota Is Associated with Disease Remission in a Pediatric Crohn’s Disease Cohort

Sprockett, D.; Fischer, N.; Boneh, R. S.; Turner, D.; Kierkus, J.; Sladek, M.; Escher, J.; Wine, E.; Yerushalmi, B.; Dias, J. A.; Shaoul, R.; Kori, M.; Snapper, S.; Holmes, S.; Bousvaros, A.; Levine, A.; Relman, D. A.

10.1101/412890 — microbiology — Posted on 2019-05-19

1498 Mind-wandering in Parkinson’s disease hallucinations reflects primary visual and default network coupling

Walpola, I. C.; Muller, A. J.; Hall, J. M.; Andrews-Hanna, J. R.; Irish, M.; Lewis, S. J. G.; Shine, J. M.; O'Callaghan, C.

10.1101/347658 — neuroscience — Posted on 2019-05-19

1499 Parasitic worm product ES-62 promotes healthspan and lifespan in a model of obesity induced ageing

Crowe, J.; Lumb, F. E.; Doonan, J.; Broussard, M.; Tarafdar, A.; Pineda, M. A.; Landabaso, C.; Mulvey, L.; Hoskisson, P. A.; Babayan, S.; Selman, C.; Harnett, W.; Harnett, M. M.

10.1101/622753 — immunology — Posted on 2019-05-19

1500 Fragment-based discovery of a new class of inhibitors targeting mycobacterial tRNA modification

Thomas, S. E.; Whitehouse, A. J.; Brown, K.; Belardinelli, J. M.; Lahiri, R.; Libardo, M. D. J.; Gupta, P.; Malhotra, S.; Boshoff, H. I. M.; Jackson, M.; Abell, C.; Coyne, A. G.; Blundell, T. L.; Floto, R. A.; Mendes, V.

10.1101/564013 — biochemistry — Posted on 2019-05-19

1501 In the presence of population structure: From genomics to candidate genes underlying local adaptation

Price, N.; Lopez, L.; Platts, A. E. E.; Lasky, J. R.; McKay, J. K.

10.1101/642306 — evolutionary biology — Posted on 2019-05-19

1502 Comprehensive Genomic Characterization of Breast Tumors with BRCA1 and BRCA2 Mutations

Lal, A.; Ramazzotti, D.; Weng, Z.; Liu, K.; Ford, J.; Sidow, A.

10.1101/409813 — cancer biology — Posted on 2019-05-19

1503 The classification of orphans is improved by combining searches in both proteomes and genomes

Basile, W.; Salvatore, M.; Elofsson, A.

10.1101/185983 — bioinformatics — Posted on 2019-05-19

1504 Diversification or collapse of self-incompatibility haplotypes as outcomes of evolutionary rescue

Harkness, A.; Goldberg, E. E.; Brandvain, Y.

10.1101/641613 — evolutionary biology — Posted on 2019-05-19

1505 Genotype Imputation and Reference Panel: A Systematic Evaluation

Bai, W.-Y.; Zhu, X.-W.; Cong, P.-K.; Zhang, X.-J.; Richards, J. B.; Zheng, H.-F.

10.1101/642546 — bioinformatics — Posted on 2019-05-19

1506 The contribution of the ankyrin repeat domain of TRPV1 as a thermal module

Islas, L. D.; Ladron-de-Guevara, E.; Rangel-Yescas, G. E.; Fernandez-Velasco, A.; Torres-Larios, A.; Rosenbaum, T.

10.1101/641803 — biophysics — Posted on 2019-05-19

1507 Effect of helical kink in antimicrobial peptides on membrane pore formation

Türkova, A.; Kabelka, I.; Kralova, T.; Sukenik, L.; Pokorna, S.; Hof, M.; Vacha, R.

10.1101/641514 — biophysics — Posted on 2019-05-19

1508 How thermophilic Gram-positive organisms perform extracellular electron transfer: characterization of the cell surface terminal reductase OcwA

Costa, N. L.; Hermann, B.; Fourmond, V.; Faustino, M.; Teixeira, M.; Einsle, O.; Paquete, C. M.; Louro, R. O.

10.1101/641308 — biochemistry — Posted on 2019-05-19

1509 Yellow adipocytes comprise a new adipocyte sub-type present in human bone marrow

Attane, C.; Esteve, D.; Chaoui, K.; Iacovoni, J. S.; Corre, J.; Moutahir, M.; Valet, P.; Schiltz, O.; Reina, N.; Muller, C.

10.1101/641886 — physiology — Posted on 2019-05-19

1510 Golgi localized β1-adrenergic receptors stimulate Golgi PI4P hydrolysis by PLCε to regulate cardiac hypertrophy

Nash, C.; Wei, W.; Irannejad, R.; Smrcka, A.

10.1101/640789 — cell biology — Posted on 2019-05-19

1511 CCMetagen: comprehensive and accurate identification of eukaryotes and prokaryotes in metagenomic data

Rossetto Marcelino, V.; Clausen, P. T. L. C.; Buchman, J.; Wille, M.; Iredell, J. R.; Meyer, W.; Lund, O.; Sorrell, T.; Holmes, E. C.

10.1101/641332 — bioinformatics — Posted on 2019-05-18

1512 SimpactCyan 1.0: An Open-source Simulator for Individual-Based Models in HIV Epidemiology with R and Python Interfaces

Liesenborgs, J.; Hendrickx, D. M.; Kuylen, E.; Niyukuri, D.; Hens, N.; Delva, W.

10.1101/440834 — epidemiology — Posted on 2019-05-18

1513 Multidimensional Profiling of Drug-Treated Cells by Imaging Mass Cytometry

Bouzekri, A.; Esch, A.; Ornatsky, O.

10.1101/549592 — cell biology — Posted on 2019-05-18

1514 Evolution of limb development in cephalopod mollusks

Tarazona, O. A.; Lopez, D. H.; Slota, L. A.; Cohn, M. J.

10.1101/379735 — developmental biology — Posted on 2019-05-18

1515 cRacle: R Tools for Estimating Climate from Vegetation

Harbert, R.; Baryiames, A.

10.1101/641183 — bioinformatics — Posted on 2019-05-18

1516 How does the mood stabilizer lithium bind ATP, the energy currency of the cell

Haimovich, A.; Goldbourt, A.

10.1101/637900 — biochemistry — Posted on 2019-05-18

1517 Genetic diversity by ISSR of two endemic quillworts (Isoetes L.) species from Amazon Iron Rocky Outcrops, Isoetes cangae e I. serracarajensis

Santos, M. P.; Araujo, J. V. d. S. R.; Lopes, A. V. d. S.; Vettorazzi, J. C. F.; Fonseca, R. N. d.; Calderon, E. N.; Boechat, M. S. B.; Aredes, F. A. S.; Pereira, M. G.; Campos, N. V.; Santos, F. M. G. d.; Fernandes, T. N.; Martins, R. L.; Esteves, F. d. A.

10.1101/635771 — genetics — Posted on 2019-05-18

1518 Binding partner regulation of Myosin VI: Loss of tumour-suppressor Dab2 leads to enhanced activity of nuclear myosin

Fili, N.; Hari-Gupta, Y.; Aston, B.; dos Santos, A.; Gough, R.; Alamad, B.; Wang, L.; Martin-Fernandez, M. L.; Toseland, C. P.

10.1101/639963 — cell biology — Posted on 2019-05-18

1519 Memory-guided microsaccades

Willeke, K.-F.; Tian, X.; Buonocore, A.; Bellet, J.; Ramirez-Cardenas, A.; Hafed, Z.

10.1101/539205 — neuroscience — Posted on 2019-05-18

1520 NSD2 overexpression drives clustered chromatin and transcriptional changes in a subset of insulated domains

Lhoumaud, P.; Badri, S.; Rodriguez-Hernaez, J.; Sakellaropoulos, T.; Sethia, G.; Kloetgen, A.; Cornwell, M.; Bhattacharyya, S.; Ay, F.; Bonneau, R.; Tsirigos, A.; Skok, J. A.

10.1101/587931 — genomics — Posted on 2019-05-18

1521 Self-reported Health is Related to Body Height and Waist Circumference in Rural Indigenous and Urbanised Latin-American Populations

Leongomez, J. D.; Sanchez, O. R.; Vasquez-Amezquita, M.; Valderrama, E.; Castellanos-Chacon, A.; Morales-Sanchez, L.; Nieto, J.; Gonzalez-Santoyo, I.

10.1101/562942 — evolutionary biology — Posted on 2019-05-18

1522 Adding noise to Markov cohort models

Iskandar, R.

10.1101/635177 — epidemiology — Posted on 2019-05-18

1523 Comparative analysis of diverse cell states establishes an epigenetic basis for inferring regulatory genes governing cell identity

Shim, W. J.; Sinniah, E.; Xu, J.; Vitrinel, B.; Alexanian, M.; Andreoletti, G.; Shen, S.; Balderson, B.; Peng, G.; Jing, N.; Sun, Y.; Chhabra, Y.; Wang, Y.; Tam, P.; Smith, A.; Piper, M.; Christiaen, L.; Nguyen, Q.; Boden, M.; Palpant, N.

10.1101/635516 — cell biology — Posted on 2019-05-18

1524 Rectal swabs in critically-ill patients provide discordant representations of the gut microbiome compared to stool samples: a brief methodologic report.

Fair, K.; Dunlap, D. G.; Fitch, A.; Bogdanovich, T.; Methe, B.; Morris, A.; McVerry, B. J.; Kitsios, G. D.

10.1101/541441 — microbiology — Posted on 2019-05-18

1525 Stimulation of Gαq Promotes Stress Granule Formation

Qifti, A.; Jackson, L.; Singla, A.; Garwain, O.; Scarlata, S.

10.1101/521369 — biochemistry — Posted on 2019-05-18

1526 Coherent neuronal dynamics driven by optogenetic stimulation in the primate brain

Shewcraft, R. A.; Dean, H. L.; Hagan, M. A.; Fabiszak, M. M.; Wong, Y. T.; Pesaran, B.

10.1101/437970 — neuroscience — Posted on 2019-05-18

1527 Methylation and Gene Expression Differences Between Reproductive Castes of Bumblebee Workers.

Marshall, H.; Lonsdale, Z. N.; Mallon, E. B.

10.1101/517698 — evolutionary biology — Posted on 2019-05-18

1528 Genetic variant pathogenicity prediction trained using disease-specific clinical sequencing datasets

Evans, P.; Wu, C.; Lindy, A.; McKnight, D.; Lebo, M.; Sarmady, M.; Abou Tayoun, A.

10.1101/334235 — genomics — Posted on 2019-05-18

1529 Leader cells in collective chemotaxis: optimality and tradeoffs

Hopkins, A.; Camley, B. A.

10.1101/642157 — biophysics — Posted on 2019-05-18

1530 Electron transport chain biogenesis activated by a JNK-insulin-Myc relay primes mitochondrial inheritance in Drosophila

Wang, Z.-H.; Liu, Y.; Chaitankar, V.; Pirooznia, M.; Xu, H.

10.1101/642314 — developmental biology — Posted on 2019-05-18

1531 The maternal-fetal interface of successful pregnancies and impact of fetal sex using single cell sequencing

Sun, T.; Gonzalez, T. L.; DENG, N.; DiPentino, R.; Clark, E. L.; Lee, B.; Tang, J.; Wang, Y.; Stripp, B. R.; yao, c.; Tseng, H.-R.; Karumanchi, S. A.; Koeppel, A. F.; Turner, S. D.; Farber, C. R.; Rich, S. S.; Wang, E. T.; Williams, J.; Pisarska, M. D.

10.1101/641118 — developmental biology — Posted on 2019-05-18

1532 Bimodal Regulation of the PRC2 Complex by USP7 Underlies Melanomagenesis

Su, D.; Wang, W.; Hou, Y.; Wang, L.; Wang, Y.; Yang, C.; Liu, B.; Chen, X.; Wu, X.; Wu, J.; Yan, D.; Wei, S.; Han, L.; Liu, S.; Shi, L.; Shan, L.

10.1101/641977 — cell biology — Posted on 2019-05-18

1533 Global analysis of epigenetic heterogeneity identifies divergent drivers of esophageal squamous cell carcinoma

CAO, W.; Lee, H.; Wu, W.; Zaman, A.; McCorkle, S.; Yan, M.; Chen, J.; Xing, Q.; Sinnott-Armstrong, N.; Xu, H.; Sailani, M. R.; Tang, W.; Cui, Y.; Liu, J.; Guan, H.; Lv, P.; Sun, X.; Sun, L.; Han, P.; Lou, Y.; Chang, J.; Wang, J.; Gao, Y.; Guo, J.; Schenk, G.; Shain, A. H.; Biddle, F. G.; Collisson, E.; Snyder, M.; Bivona, T. G.

10.1101/641357 — cell biology — Posted on 2019-05-18

1534 Atomistic basis of opening and conduction in mammalian inward rectifier potassium (Kir2.2) channels

Zangerl, E.-M.; Lee, S.; Maksaev, G.; Bernsteiner, H.; Ren, F.; Yuan, P.; Stary-Weinzinger, A.; Nichols, C.

10.1101/642090 — biophysics — Posted on 2019-05-18

1535 Mass spectra alignment using virtual lock-masses

Brochu, F.; Plante, P.-L.; Drouin, A.; Gagnon, D.; Richard, D.; Durocher, F.; Diorio, C.; Marchand, M.; Corbeil, J.; Laviolette, F.

10.1101/292425 — bioinformatics — Posted on 2019-05-18

1536 Association analysis of loci implied in “buffering” epistasis

Legarra, A.; Reverter, A.; Vitezica, Z. G.; Naval-Sanchez, M.; Meyer, K.; Henshall, J.; Raidan, F.; LI, Y.; Hudson, N. J.; Porto-Neto, L. R.

10.1101/637579 — genetics — Posted on 2019-05-18

1537 TDP-43 α-helical structure tunes liquid-liquid phase separation and function

Conicella, A. E.; Dignon, G. L.; Zerze, G. H.; Schmidt, H. B.; D'Ordine, A. M.; Kim, Y. C.; Rohatgi, R.; Ayala, Y. M.; Mittal, J.; Fawzi, N. L.

10.1101/640615 — biochemistry — Posted on 2019-05-18

1538 Neuron-specific knockouts indicate the importance of network communication to Drosophila rhythmicity

Schlichting, M.; Diaz, M. M.; Xin, J.; Rosbash, M.

10.1101/639146 — neuroscience — Posted on 2019-05-18

1539 PhenoGMM: Gaussian mixture modelling of microbial cytometry data enables efficient predictions of biodiversity

Rubbens, P.; Props, R.; Kerckhof, F.-M.; Boon, N.; Waegeman, W.

10.1101/641464 — microbiology — Posted on 2019-05-18

1540 High-throughput microcircuit analysis of individual human brains through next-generation multineuron patch-clamp

Peng, Y.; Mittermaier, F. X.; Planert, H.; Schneider, U. C.; Alle, H.; Geiger, J. R.

10.1101/639328 — neuroscience — Posted on 2019-05-18

1541 Discovery of compounds inhibiting the ADP-ribosyltransferase activity of pertussis toxin

Ashok, Y.; Miettinen, M.; de Oliveira, D. K. H.; Tamirat, M. Z.; Näreoja, K.; Tiwari, A.; Hottiger, M. O.; Johnson, M. S.; Lehtiï, L.; Pulliainen, A.

10.1101/637801 — microbiology — Posted on 2019-05-18

1542 Multiplexed imaging of immune cells in staged multiple sclerosis lesions by mass cytometry

Ramaglia, V.; Mohamed, S. S.; Legg, K.; Rojas, O.; Zandee, S.; Fu, F.; Ornatsky, O.; Swanson, E. C.; Prat, A.; McKee, T.; Gommerman, J.

10.1101/638015 — immunology — Posted on 2019-05-18

1543 Centromere-proximal meiotic crossovers in Drosophila melanogaster are suppressed by both highly-repetitive heterochromatin and the centromere effect

Hartmann, M.; Umbanhowar, J.; Sekelsky, J.

10.1101/637561 — genetics — Posted on 2019-05-18

1544 Starting antiretroviral therapy within seven days of a positive HIV test increased the risk of loss to follow up in a primary healthcare clinic: a retrospective cohort study in Masaka, Uganda.

Kiwanuka, J.; Mukulu Waila, J.; Kahungu Muhindo, M.; Kitonsa, J.; Kiwanuka, N.

10.1101/640516 — epidemiology — Posted on 2019-05-18

1545 A comprehensive knowledge base of synaptic electrophysiology in the rodent hippocampal formation

Moradi, K.; Ascoli, G.

10.1101/632760 — neuroscience — Posted on 2019-05-17

1546 Dissociable effects of visual crowding on the perception of colour and motion

Greenwood, J. A.; Parsons, M. J.

10.1101/639450 — neuroscience — Posted on 2019-05-17

1547 Cryo-EM structure of the ClpXP protein degradation machinery

Gatsogiannis, C.; Balogh, D.; Merino, F.; Sieber, S.; Raunser, S.

10.1101/638692 — molecular biology — Posted on 2019-05-17

1548 Methods Matter -- Standard Production Platforms For Recombinant AAV Can Produce Chemically And Functionally Distinct Vectors

Rumachik, N. G.; Malaker, S. A.; Poweleit, N.; Maynard, L. H.; Adams, C. M.; Leib, R. D.; Cirolia, G.; Thomas, D.; Stamnes, S.; Holt, K.; Sinn, P.; May, A. P.; Paulk, N. K.

10.1101/640169 — molecular biology — Posted on 2019-05-17

1549 In silico characterization of a “universal” Treg signature reveals the proenkephalin gene as a novel Treg marker

Marodon, G.

10.1101/638072 — immunology — Posted on 2019-05-17

1550 Structural basis for tetherin antagonism as a barrier to zoonotic lentiviral transmission

Buffalo, C. Z.; Sturzel, C.; Heusinger, E.; Kmiec, D.; Kirchhoff, F.; Hurley, J.; Ren, X.

10.1101/638890 — biochemistry — Posted on 2019-05-17

1551 Community structure ecosystem function relationships in the Congo Basin methane cycle depend on the physiological scale of function

Meyer, K. M.; Hopple, A. M.; Klein, A. M.; Morris, A. M. H.; Bridgham, S.; Bohannan, B. J. M.

10.1101/639989 — ecology — Posted on 2019-05-17

1552 The effect of combined patching and citalopram on visual acuity in adults with amblyopia: a randomized, crossover, placebo-controlled trial

Lagas, A. K.; Black, J. M.; Russell, B. R.; Kydd, R. R.; Thompson, B.

10.1101/587980 — clinical trials — Posted on 2019-05-17

1553 Is amphistomy an adaptation to high light? Optimality models of stomatal traits along light gradients

Muir, C. D.

10.1101/601377 — plant biology — Posted on 2019-05-17

1554 High-content assay for precision medicine discovery in cystic fibrosis.

Prins, S.; Langron, E.; Hastings, C.; Hill, E.; Stefan, A. C.; Griffin, L. D.; Vergani, P.

10.1101/631614 — pharmacology and toxicology — Posted on 2019-05-17

1555 Sonic hedgehog signaling in astrocytes mediates cell-type-specific synaptic organization

Hill, S. A.; Blaeser, A.; Coley, A.; Xie, Y.; Shepard, K. A.; Harwell, C.; Gao, W.-J.; Garcia, A. D. R.

10.1101/537860 — neuroscience — Posted on 2019-05-17

1556 Eimeria falciformis BayerHaberkorn1970 and novel wild derived isolates from house mice: differences in parasite lifecycle, pathogenicity and host immune reactions

Al-khlifeh, E.; Balard, A.; Jarquin-Diaz, V. H.; Weyrich, A.; Wibbelt, G.; Heitlinger, E.

10.1101/611277 — microbiology — Posted on 2019-05-17

1557 Thyroid hormone coordinates developmental trajectories but does not underlie developmental truncation in Danionins

Hu, Y.; Mauri, A.; Donahue, J.; Singh, R.; Acosta, B.; McMenamin, S. K.

10.1101/562074 — developmental biology — Posted on 2019-05-17

1558 Fluorescence biosensor for real-time interaction dynamics of host proteins with HIV-1 capsid tubes

Lau, D.; Walsh, J.; Peng, W.; Shah, V.; Turville, S.; Jacques, D.; Böcking, T.

10.1101/619841 — biophysics — Posted on 2019-05-17

1559 The validity and consistency of continuous joystick response in perceptual decision-making.

Szul, M. J.; Bompas, A.; Sumner, P.; Zhang, J.

10.1101/501536 — neuroscience — Posted on 2019-05-17

1560 Microbiome disturbance and resilience dynamics of the upper respiratory tract in response to influenza A virus infection in analog hosts

Kaul, D.; Rathnasinghe, R.; Ferres, M.; Tan, G. S.; Barrera, A.; Pickett, B.; Methe, B.; Das, S.; Budnik, I.; Halpin, R.; Wentworth, D.; Schmolke, M.; Mena, I.; Albrecht, R.; Singh, I.; Nelson, K. E.; Garcia-Sarstre, A.; Dupont, C.; Medina, R.

10.1101/325324 — microbiology — Posted on 2019-05-17

1561 MetaNovo: a probabilistic approach to peptide and polymorphism discovery in complex mass spectrometry datasets

Potgieter, M. G.; Nel, A. J.; Tabb, D. L.; Fortuin, S.; Garnett, S.; Blackburn, J.; Mulder, N.

10.1101/605550 — bioinformatics — Posted on 2019-05-17

1562 Reproducibility of the correlative triad among aging, dopamine D2-like receptor availability, and cognition

Juarez, E. J.; Castrellon, J. J.; Green, M. A.; Crawford, J. L.; Seaman, K. L.; Smith, C. T.; Dang, L. C.; Matuskey, D.; Morris, E. D.; Cowan, R. L.; Zald, D. H.; Samanez-Larkin, G. R.

10.1101/494765 — neuroscience — Posted on 2019-05-17

1563 Contribution of Retrotransposition to Developmental Disorders

Gardner, E. J.; Prigmore, E.; Gallone, G.; Danecek, P.; Samocha, K. E.; Handsaker, J.; Gerety, S. S.; Ironfield, H.; Short, P. J.; Sifrim, A.; Singh, T.; Chandler, K. E.; Clement, E.; Lachlan, K. L.; Prescott, K.; Rosser, E.; FitzPatrick, D. R.; Firth, H. V.; Hurles, M. E.; Deciphering Developmental Disorders study,

10.1101/471375 — genetics — Posted on 2019-05-17

1564 How important is it to consider lineage diversification heterogeneity in macroevolutionary studies: lessons from the lizard family Liolaemidae

Olave, M.; Avila, L. J.; Sites, J. W.; Morando, M.

10.1101/563635 — evolutionary biology — Posted on 2019-05-17

1565 Probing Allosteric Coupling of a Constitutively Open Mutant of the Ion Channel KcsA using Solid State NMR

Sun, Z.; Xu, Y.; Zhang, D.; McDermott, A. E.

10.1101/567024 — biophysics — Posted on 2019-05-17

1566 Explicit control of step timing during split-belt walking reveals interdependent recalibration of movements in space and time

Gonzalez-Rubio, M.; Velasquez, N. F.; Torres-Oviedo, G.

10.1101/614644 — neuroscience — Posted on 2019-05-17

1567 Computational tools to detect signatures of mutational processes in DNA from tumours: a review and empirical comparison of performance

Omichessan, H.; Severi, G.; Perduca, V.

10.1101/483982 — bioinformatics — Posted on 2019-05-17

1568 Personalized Annotation-based Networks (PAN) for the Prediction of Breast Cancer Relapse

Nguyen, T.; Lee, S. C.; Quinn, T. P.; Truong, B.; Li, X.; Tran, T.; Venkatesh, S.; Le, T. D.

10.1101/534628 — bioinformatics — Posted on 2019-05-17

1569 Automated optimized parameters for T-distributed stochastic neighbor embedding improve visualization and allow analysis of large datasets

Belkina, A. C.; Ciccolella, C. O.; Anno, R.; Spidlen, J.; Halpert, R.; Snyder-Cappione, J.

10.1101/451690 — bioinformatics — Posted on 2019-05-17

1570 Can machine learning automatically detect the aligned trunk in sitting directly from raw video using a depth camera?

Sanchez, M. B.; Cunningham, R.; Butler, P. B.; Loram, I.

10.1101/421172 — bioengineering — Posted on 2019-05-17

1571 Optogenetically-Induced Population Discharge Threshold as a Sensitive Measure of Network Excitability

Klorig, D. C.; Alberto, G.; Smith, T.; Godwin, D.

10.1101/641126 — neuroscience — Posted on 2019-05-17

1572 Modeling Avian Full Annual Cycle Distribution and Population Trends with Citizen Science Data

Fink, D.; Auer, T.; Johnston, A.; Ruiz-Gutierrez, V.; Hochachka, W. M.; Kelling, S.

10.1101/251868 — ecology — Posted on 2019-05-17

1573 A model of tuberculosis clustering in low incidence countries reveals more on-going transmission in the United Kingdom than the Netherlands between 2010 and 2015.

Brooks-Pollock, E.; Danon, L.; Korthals Altes, H.; Davidson, J.; Pollock, A. M. T.; van Soolingen, D.; Campbell, C.; Lalor, M. K.

10.1101/639260 — epidemiology — Posted on 2019-05-17

1574 An Empiricist’s Guide to Modern Coexistence Theory for Competitive Communities

Godwin, C. M.; Chang, F.-H.; Cardinale, B.

10.1101/640557 — ecology — Posted on 2019-05-17

1575 MicroRNA miR-1002 enhances NMNAT-mediated stress response by modulating alternative splicing

Park, J.; Zhu, Y.; Brazill, J. M.; Li, C.; Wuchty, S.; Zhai, G.

10.1101/641944 — neuroscience — Posted on 2019-05-17

1576 Follicular regulatory T cells can access the germinal centre independently of CXCR5

Vanderleyden, I.; Fra-Bido, S.; Innocentin, S.; Okkenhaug, H.; Evans-Bailey, N.; Pierson, W.; Linterman, M.

10.1101/641589 — immunology — Posted on 2019-05-17

1577 Genetic and physiological mechanisms of freezing tolerance in locally adapted populations of a winter annual

Sanderson, B. J.; Park, S.; Jameel, M. I.; Kraft, J. C.; Thomashow, M. F.; Schemske, D. W.; Oakley, C. G.

10.1101/640763 — evolutionary biology — Posted on 2019-05-17

1578 Spatiotemporal drivers of crop pests and pathogens abundance at the landscape scale

Delaune, T.; Ballot, R.; Gouwie, C.; Maupas, F.; Sausse, C.; Felix, I.; Brun, F.; Barbu, C. M.

10.1101/641555 — ecology — Posted on 2019-05-17

1579 POLARIS: path of least action analysis on energy landscapes

Seitz, E. E.; Frank, J.

10.1101/633628 — biophysics — Posted on 2019-05-17

1580 COSS: A fast and user-friendly tool for spectral library searching

Shiferaw, G. A.; Vandermarliere, E.; Hulstaert, N.; Gabriels, R.; Martens, L.; Volders, P.-J.

10.1101/640458 — bioinformatics — Posted on 2019-05-17

1581 Chromatin structure-dependent histone incorporation revealed by a genome-wide deposition assay

Tachiwana, H.; Dacher, M.; Maehara, K.; Harada, A.; Ohkawa, Y.; Kimura, H.; Kurumizaka, H.; Saitoh, N.

10.1101/641381 — biochemistry — Posted on 2019-05-17

1582 Variability in Human Drug Metabolizing Cytochrome P450 CYP2C9, CYP2C19 and CYP3A5 Activities Caused by Genetic Variations in Cytochrome P450 Oxidoreductase

Velazques, M. N. R.; Parween, S.; Udhane, S. S.; Pandey, A. V.

10.1101/640540 — pharmacology and toxicology — Posted on 2019-05-17

1583 Acute Thiamethoxam exposure in Apis mellifera : Absence of both stress-induced changes in mRNA splicing and synergistic effects of common fungicide and herbicide

Decio, P.; Ustaoglu, P.; Roat, T. C.; Malaspina, O.; Devaud, J.-M.; Stoger, R.; Soller, M.

10.1101/641407 — pharmacology and toxicology — Posted on 2019-05-17

1584 Effects of mid-frontal brain stimulation on sustained attention

van Schouwenburg, M. R.; Sligte, I. G.; Giffin, M. R.; Gunther, F.; Koster, D.; Spronkers, F. S.; Vos, A.; Slagter, H. A.

10.1101/641498 — neuroscience — Posted on 2019-05-17

1585 Temporal signal-to-noise changes in combined multiband- and slice-accelerated echo-planar imaging with a 20- and 64-channel coil

Seidel, P.; Levine, S. M.; Tahedl, M.; Schwarzbach, J. V.

10.1101/641902 — neuroscience — Posted on 2019-05-17

1586 Varied effects of algal symbionts on transcription factor NF-κB in a sea anemone and a coral: possible roles in symbiosis and thermotolerance

Mansfield, K. M.; Cleves, P. A.; Van Vlack, E.; Kriefall, N. G.; Benson, B. E.; Camacho, D. J.; Hammond, O.; Pedroza, M.; Siggers, T.; Pringle, J. R.; Davies, S. W.; Gilmore, T. D.

10.1101/640177 — molecular biology — Posted on 2019-05-17

1587 Characterization Of An Enhancer Element That Regulates FOXP2 Expression In Human Cerebellum

Madurga, J.; Novo, F. J.

10.1101/641597 — genomics — Posted on 2019-05-17

1588 Deep evolutionary origin of nematode SL2 trans-splicing revealed by genome-wide analysis of the Trichinella spiralis transcriptome

Wenzel, M. A.; Johnston, C.; Müller, B.; Pettitt, J.; Connolly, B.

10.1101/642082 — genomics — Posted on 2019-05-17

1589 Retrospective Association Analysis of Longitudinal Binary Traits Identifies Important Loci and Pathways in Cocaine Use

Wu, W.; Wang, Z.; Xu, K.; Zhang, X.; Amei, A.; Gelernter, J.; Zhao, H.; Justice, A. C.; Wang, Z.

10.1101/628180 — genetics — Posted on 2019-05-17

1590 SYCP2 translocation-mediated dysregulation and frameshift variants cause human male infertility

Schilit, S. L.; Menon, S.; Friedrich, C.; Kammin, T.; Wilch, E.; Hanscom, C.; Jiang, S.; Kliesch, S.; Talkowski, M. E.; Tüttelmann, F.; MacQueen, A. J.; Morton, C. C.

10.1101/641928 — genetics — Posted on 2019-05-17

1591 Cryptic host specialisation within Poecilochirus carabi mites explains population differences in the extent of co-adaptation with their burying beetle Nicrophorus vespilloides hosts

Sun, S.-J.; Kilner, R. M.

10.1101/641936 — evolutionary biology — Posted on 2019-05-17

1592 Evolution and expansion of multidrug resistant malaria in Southeast Asia: a genomic epidemiology study

Hamilton, W. L.; Amato, R.; van der Pluijm, R. W.; Jacob, C. G.; Huynh Hong, Q.; Nguyen Thanh, T.-N.; Tran Tinh, H.; Hongvanthong, B.; Chindavongsa, K.; Mayxay, M.; Huy, R.; Leang, R.; Huch, C.; Dysoley, L.; Amaratunga, C.; Suon, S.; Fairhurst, R. M.; Tripura, R.; Peto, T. J.; Sovann, Y.; Jittamala, P.; Hanboonkunupakarn, B.; Pukrittayakamee, S.; Nguyen Hoang, C.; Dhorda, M.; Vongpromek, R.; Xin Hui, C. S.; Maude, R. J.; Pearson, R. D.; Nguyen, T.; Rockett, K.; Drury, E.; Goncalves, S.; White, N. J.; Day, N. P.; Kwiatkowski, D. P.; Dondorp, A. M.; Miotto, O.

10.1101/621763 — epidemiology — Posted on 2019-05-17

1593 mitoXplorer, a visual data mining platform to systematically analyze and visualize mitochondrial expression dynamics and mutations

Yim, A.; Koti, P.; Bonnard, A.; Duerrbaum, M.; Mueller, C.; Villaveces, J.; Gamal, S.; Cardone, G.; Perocchi, F.; Storchova, Z.; Habermann, B.

10.1101/641423 — bioinformatics — Posted on 2019-05-17

1594 Comparison of two individual-based models for simulating HIV epidemics in a population with HSV-2 using as case study Yaounde-Cameroon, 1989-1998

Hendrickx, D. M.; Sousa, J.; Libin, P. J.; Delva, W.; Liesenborgs, J.; Hens, N.; Müller, V.; Vandamme, A.-M.

10.1101/637389 — epidemiology — Posted on 2019-05-17

1595 CCMetagen: comprehensive and accurate identification of eukaryotes and prokaryotes in metagenomic data

Rossetto Marcelino, V.; Clausen, P. T. L. C.; Buchman, J.; Wille, M.; Iredell, J. R.; Meyer, W.; Lund, O.; Sorrell, T.; Holmes, E. C.

10.1101/641332 — bioinformatics — Posted on 2019-05-17

1596 Modelling the population dynamics of Plasmodium falciparum gametocytes in humans during malaria infection

Cao, P.; Collins, K. A.; Zaloumis, S.; Wattanakul, T.; Tarning, J.; Simpson, J. A.; McCarthy, J. S.; McCaw, J. M.

10.1101/641472 — bioinformatics — Posted on 2019-05-17

1597 A rationally designed and highly versatile epitope tag for nanobody-based purification, detection and manipulation of proteins

Goetzke, H.; Kilisch, M.; Martinez-Carranza, M.; Sograte-Idrissi, S.; Rajavel, A.; Schlichthaerle, T.; Engels, N.; Jungmann, R.; Stenmark, P.; Opazo, F.; Frey, S.

10.1101/640771 — biochemistry — Posted on 2019-05-17

1598 Diffuse TBI-induced expression of anxiety-like behavior coincides with altered glutamatergic function, TrkB protein levels and region-dependent pathophysiology in amygdala circuitry

Beitchman, J. A.; Griffiths, D. R.; Hur, Y.; Ogle, S. B.; Hair, C. E.; Morrison, H. W.; Lifshitz, J.; Adelson, P. D.; Thomas, T. C.

10.1101/640078 — neuroscience — Posted on 2019-05-17

1599 easyCLIP Quantifies RNA-Protein Interactions and Characterizes Recurrent PCBP1 Mutations in Cancer

Porter, D. F.; Khavari, P. A.

10.1101/635888 — molecular biology — Posted on 2019-05-17

1600 Structural and functional characterisation of SiiA, an auxiliary protein from the SPI4-encoded type 1 secretion system from Salmonella enterica

Kirchweger, P.; Weiler, S.; Egerer-Sieber, C.; Blasl, A.-T.; Hoffmann, S.; Schmidt, C.; Sander, N.; Merker, D.; Gerlach, R. G.; Hensel, M.; Muller, Y. A.

10.1101/641415 — microbiology — Posted on 2019-05-17

1601 Benchmarking software tools for detecting and quantifying selection in Evolve and Resequencing studies

Vlachos, C.; Burny, C.; Pelizzola, M.; Borges, R.; Futschik, A.; Kofler, R.; Schloetterer, C.

10.1101/641852 — evolutionary biology — Posted on 2019-05-17

1602 Gene expression signatures predict response to therapy with growth hormone

Stevens, A.; Murray, P.; De Leonibus, C.; Garner, T.; Koledova, E.; Ambler, G.; Hou, J. W.; Kapelari, K.; Salles, J. P.; Binder, G.; Maghnie, M.; Zucchini, S.; Bashnina, E.; Skorodok, J.; Yeste, D.; Belgorosky, A.; Lopez Siguero, J. P.; Coutant, R.; Vangsoy-Hansen, E.; Hagenas, L.; Dahlgren, J.; Deal, C.; Chatelain, P.; Clayton, P.

10.1101/637892 — clinical trials — Posted on 2019-05-17

1603 Hairpin: a tool for predicting structural non-coding RNA genes ab initio

Pettersen, J. P.

10.1101/640862 — bioinformatics — Posted on 2019-05-17

1604 Rotational Dynamics Reduce Interference Between Sensory and Memory Representations

Libby, A.; Buschman, T. J.

10.1101/641159 — neuroscience — Posted on 2019-05-17

1605 Visual pathways of the secondary eyes in the brain of a jumping spider

Steinhoff, P. O. M.; Uhl, G.; Harzsch, S.; Sombke, A.

10.1101/640706 — neuroscience — Posted on 2019-05-17

1606 An optimized protocol for iDISCO+ rat brain clearing, imaging, and analysis

Branch, A.; Tward, D.; Vogelstein, J. T.; Wu, Z.; Gallagher, M.

10.1101/639674 — neuroscience — Posted on 2019-05-17

1607 Metacognitive awareness of difficulty in action selection: the role of the cingulo-opercular network

Teuchies, M.; Desender, K.; De Baene, W.; Demanet, J.; Brass, M.

10.1101/641340 — neuroscience — Posted on 2019-05-17

1608 Tracking of quiescence in Leishmania by quantifying the expression of GFP in the ribosomal DNA locus

Jara, M.; Maes, I.; Imamura, H.; Domagalska, M. A.; Dujardin, J.-C.; Arevalo, J.

10.1101/641290 — microbiology — Posted on 2019-05-17

1609 De novo phased assembly of the Vitis riparia grape genome

Girollet, N.; Rubio, B.; Bert, P.-F.

10.1101/640565 — genomics — Posted on 2019-05-17

1610 Survival status and predictors of mortality among Breast cancer patients at Black lion specialized hospital, Adult oncology unit, Addis Ababa, Ethiopia, 2018. A retrospective follow-up study with survival analysis

Shiferaw, W.; Mulugeta, T.; Abera, H.; Asmare, Y.; Yirga, T.

10.1101/636431 — epidemiology — Posted on 2019-05-17

1611 Simultaneous 3D super-resolution fluorescence microscopy and atomic force microscopy: combined SIM and AFM platform for cell imaging

Gomez-Varela, A. I.; Stamov, D. R.; Miranda, A.; Alves, R.; Barata-Antunes, C.; Dambournet, D.; Drubin, D. G.; Paiva, S.; De Beule, P. A. A.

10.1101/638262 — cell biology — Posted on 2019-05-17

1612 Public health in genetic spaces: a statistical framework to optimize cluster-based outbreak detection

Chato, C.; Poon, A.

10.1101/639997 — epidemiology — Posted on 2019-05-17

1613 A Hotspot Atop: Rivers of the Guyana Highlands Hold High Diversity of Endemic Pencil Catfish

Paz, H. J.; Hayes, M. M.; Stout, C. C.; Werneke, D. C.; Armbruster, J. W.

10.1101/640821 — zoology — Posted on 2019-05-17

1614 Characterizing the serotonin biosynthesis pathway upon aphid infestation in Setaria viridis leaves

Dangol, A.; Yaakov, B.; Jander, G.; Strickler, S. R.; Tzin, V.

10.1101/642041 — plant biology — Posted on 2019-05-17

1615 Increasing cerebral blood flow improves cognition into late stages in Alzheimer’s disease mice

Bracko, O.; Njiru, B. N.; Swallow, M.; Ali, M.; Schaffer, C. B.

10.1101/640912 — neuroscience — Posted on 2019-05-17

1616 Toxoplasma gondii infection drives conversion of NK Cells into ILC1s

Park, E.; Patel, S.; Wang, Q.; Andhey, P.; Zaitsev, K.; Porter, S.; Hershey, M.; Bern, M.; Plougastel-Douglas, B.; Collins, P.; Colonna, M.; Murphy, K. M.; Oltz, E.; Artyomov, M.; Sibley, L. D.; Yokoyama, W. M.

10.1101/642017 — immunology — Posted on 2019-05-17

1617 RNA promotes phase separation of glycolysis enzymes into yeast G bodies in hypoxia

Fuller, G. G.; Han, T.; Freeberg, M. A.; Moresco, J. J.; Yates, J. R.; Kim, J. K.

10.1101/638650 — cell biology — Posted on 2019-05-17

1618 Live-cell STED microscopy of mitochondrial cristae

Stephan, T.; Roesch, A.; Riedel, D.; Jakobs, S.

10.1101/640920 — cell biology — Posted on 2019-05-17

1619 Specialized medial prefrontal-amygdala coordination in prosocial and antisocial decision-making

dal monte, o.; Chu, C.-C. J.; Fagan, N. A.; Chang, S. W. C.

10.1101/640292 — neuroscience — Posted on 2019-05-17

1620 Analysis tools to quantify dissemination of pathology in zebrafish larvae

Stirling, D. R.; Suleyman, O.; Gil, E.; Elks, P. M.; Torraca, V.; Noursadeghi, M.; Tomlinson, G. S.

10.1101/639633 — microbiology — Posted on 2019-05-17

1621 Genetic overlap between psychiatric disorders and neuropsychiatric symptoms in HD

Ellis, N.; Tee, A.; McAllister, B.; Massey, T.; McLauchlan, D.; Stone, T.; Correia, K.; Loupe, J.; Kim, K.-H.; Barker, D.; Hong, E. P.; Chao, M. J.; Long, J. D.; Lucente, D.; Vonsattel, J. P. G.; Mouro Pinto, R.; Elneel, K. A.; Ramos, E. M.; Mysore, J. S.; Gillis, T.; Wheeler, V. C.; Medway, C.; Hall, L.; Kwak, S.; Ehrhardt, A. G.; Sampaio, C.; Ciosi, M.; Maxwell, A.; Chatzi, A.; Monckton, D.; Orth, M.; Landwehrmeyer, G. B.; Paulsen, J. S.; Shoulson, I.; Myers, R.; Duijn, E. v.; Rickards, H.; MacDonald, M.; Lee, J.-M.; Gusella, J. F.; Jones, L.; Holmans, P.

10.1101/639658 — genetics — Posted on 2019-05-17

1622 Multiple independent origins of apicomplexan-like parasites

Mathur, V.; Kolisko, M.; Hehenberger, E.; Irwin, N. A.; Leander, B. S.; Kristmundsson, A.; Freeman, M. A.; Keeling, P. J.

10.1101/636183 — evolutionary biology — Posted on 2019-05-17

1623 Age at period cessation and trajectories of cardiovascular risk factors across mid and later life: a prospective cohort study

O'Keeffe, L. M.; Kuh, D.; Fraser, A.; Howe, L. D.; Lawlor, D. A.; Hardy, R.

10.1101/639518 — epidemiology — Posted on 2019-05-17

1624 Evaluating a digital sepsis alert in a London multi-site hospital network: a natural experiment using electronic health record data

Honeyford, K.; Cooke, G.; Kinderlerer, A.; Williamson, E.; Gilchrist, M.; Holmes, A.; Glampson, B.; Mulla, A.; Costelloe, C.

10.1101/637967 — epidemiology — Posted on 2019-05-17

1625 Anopheles bionomic, insecticide resistance and malaria transmission in southwest Burkina Faso: a pre-intervention study

SOMA, D. D.; Zogo, B. M.; Some, A.; Bertin N, T.; Hien, D. F. d. S.; Pooda, H. S.; Coulibaly, S.; Gnambani, J. E.; Ouari, A.; Mouline, K.; Dahounto, A.; Ouedraogo, G. A.; Fournet, F.; Koffi, A. A.; Pennetier, C.; Moiroux, N.; Dabire, R. K.

10.1101/638551 — epidemiology — Posted on 2019-05-17

1626 FoxMask: a new automated tool for animal detection in camera trap images

Devost, E.; Lai, S.; Casajus, N.; Berteaux, D.

10.1101/640037 — ecology — Posted on 2019-05-17

1627 Interdependence of intra- and inter-domain motions in the PSD-95 PDZ12 tandem

Kovacs, B.; Zajacz-Epresi, N.; Gaspari, Z.

10.1101/640631 — bioinformatics — Posted on 2019-05-17

1628 Distributed Biomanufacturing of Liquefied Petroleum Gas

Hoeven, R.; Hughes, J.; Amer, M.; Wojcik, E.; Tait, S.; Faulkner, M.; Yunus, I.; Hardman, S.; Johannissen, L.; Chen, G.-Q.; Smith, M.; Jones, P.; Toogood, H.; Scrutton, N.

10.1101/640474 — bioengineering — Posted on 2019-05-17

1629 Single-Cell, Human Sperm Transcriptomes and Variants from Fathers of Autistic and Healthy Children

Tomoiaga, D.; Aguiar-Pulido, V.; Shrestha, S.; Feinstein, P.; Levy, S. E.; Rosenfeld, J. A.; Mason, C.

10.1101/640607 — genomics — Posted on 2019-05-17

1630 Programmatic goals and spatial epidemiology influence the merit of targeted versus of population-wide interventions for yaws eradication

Mooring, E. Q.; Marks, M.; Mitja, O.; Castro, M.; Lipsitch, M.; Murray, M.

10.1101/640326 — epidemiology — Posted on 2019-05-17

1631 Simulated neutral metacommunities support the habitat amount hypothesis

Laroche, F.; Balbi, M.; Grebert, T.; Jabot, F.; Archaux, F.

10.1101/640995 — ecology — Posted on 2019-05-17

1632 National Wetland Map 5 - and improved spatial extent and representation of inland aquatic and estuarine ecosystems in South Africa

van Deventer, H.; Van Niekerk, L.; Adams, J.; Dinala, M. K.; Gangat, R.; Lamberth, S. J.; Lotter, M.; Mbona, N.; MacKay, F.; Nel, J. L.; Ramjukadh, C.-L.; Skowno, A.; Weerts, S.

10.1101/640441 — ecology — Posted on 2019-05-17

1633 Small molecule inhibitors of G9a reactivate the maternal PWS genes in Prader-Willi-Syndrome patient derived neural stem cells and differentiated neurons

Wu, H.; Ng, C.; Villegas, V.; Chamberlain, S.; Cacace, A.; Wallace, O.

10.1101/640938 — cell biology — Posted on 2019-05-17

1634 BURMUDA: A novel deep transfer learning method for single-cell RNA sequencing batch correction reveals hidden high-resolution cellular subtypes

Wang, T.; Johnson, T. S.; Shao, W.; Zhang, J.; Huang, K.

10.1101/641191 — bioinformatics — Posted on 2019-05-17

1635 Systematic interrogation of the distinct metabolic potential in gut microbiomes of inflammatory bowel disease patients with dysbiosis

Heinken, A.; Thiele, I.

10.1101/640649 — systems biology — Posted on 2019-05-17

1636 Nimodipine prevents the development of spasticity after spinal cord injury

Marcantoni, M.; Fuchs, A.; Low, P.; Kiehn, O.; Bellardita, C.

10.1101/639211 — pathology — Posted on 2019-05-17

1637 Mouse and human microglial phenotypes in Alzheimer’s disease are controlled by amyloid plaque phagocytosis through Hif1α

Grubman, A.; Choo, X. Y.; Chew, G.; Ouyang, J. F.; Sun, G.; Croft, N. P.; Rossello, F. J.; Simmons, R.; Buckberry, S.; Landin, D. V.; Pflueger, J.; Vandekolk, T. H.; Abay, Z.; Liu, X.; Haynes, J. M.; McLean, C.; Williams, S.; Chai, S. Y.; Wilson, T.; Lister, R.; Pouton, C. W.; Purcell, A. W.; Rackham, O. J. L.; Petretto, E.; Polo, J. M.

10.1101/639054 — neuroscience — Posted on 2019-05-17

1638 Individual differences in stereotypy and neuron subtype translatome with TrkB deletion

Engeln, M.; Song, Y.; Chandra, R.; La, A.; Evans, B.; Fox, M. E.; Thomas, S.; Francis, T. C.; Hertzano, R.; Lobo, M. K.

10.1101/640987 — neuroscience — Posted on 2019-05-17

1639 Acid and inflammatory sensitisation of naked mole-rat colonic afferent nerves

Smith, E. S. J.; Hockley, J. R.; Taylor, T. S.; Callejo, G.; Husson, Z. M.

10.1101/636571 — neuroscience — Posted on 2019-05-17

1640 Non-replication of functional connectivity differences in ASD: a multi-site study

He, Y.; Byrge, L.; Kennedy, D. P.

10.1101/640797 — neuroscience — Posted on 2019-05-17

1641 The physiological effects of non-invasive brain stimulation fundamentally differ across the human cortex

Castrillon, G.; Sollmann, N.; Kurcyus, K.; Razi, A.; Krieg, S. M.; Riedl, V.

10.1101/639237 — neuroscience — Posted on 2019-05-17

1642 A cytomegalovirus immunevasin triggers integrated stress response-dependent reorganization of the endoplasmic reticulum.

Zhang, H.; Read, C.; Nguyen, C. C.; Siddiquey, M. N. A.; Shang, C.; Hall, C. M.; von Einem, J.; Kamil, J. P.

10.1101/641068 — microbiology — Posted on 2019-05-17

1643 Root microbiota assembly and adaptive differentiation among European Arabidopsis populations

Thiergart, T.; Duran, P.; Ellis, T.; Garrido-Oter, R.; Kemen, E.; Roux, F.; Alonso-Blanco, C.; Agren, J.; Schulze-Lefert, P.; Hacquard, S.

10.1101/640623 — microbiology — Posted on 2019-05-17

1644 Composition of estuarine sediment microbiome from a chronosequence of restored urban salt marshes

Morris, N.; Alldred, M.; Zarnoch, C.; Alter, E.

10.1101/641274 — microbiology — Posted on 2019-05-17

1645 Intragenomic variability and extended sequence patterns in the mutational signature of ultraviolet light

Lindberg, M.; Bostrom, M.; Elliott, K.; Larsson, E.

10.1101/640722 — genomics — Posted on 2019-05-17

1646 Accuracy, Robustness and Scalability of Dimensionality Reduction Methods for Single Cell RNAseq Analysis

Sun, S.; Zhu, J.; Ma, Y.; Zhou, X.

10.1101/641142 — genomics — Posted on 2019-05-17

1647 Adding noise to Markov cohort models

Iskandar, R.

10.1101/635177 — epidemiology — Posted on 2019-05-17

1648 Risk Factors Associated to Types of Gallstone Diagnosed at Ibnsina Gastroenterology center, Sudan

Shaddad, M.

10.1101/640102 — epidemiology — Posted on 2019-05-17

1649 Shift in bacterial taxa precedes morphological plasticity in a larval echinoid

Carrier, T.; Reitzel, A.

10.1101/640953 — ecology — Posted on 2019-05-17

1650 Cooperation and spatial self-organization determine ecosystem function for polysaccharide-degrading bacteria

Ebrahimi, A.; Schwartzman, J. A.; Cordero, O. X.

10.1101/640961 — ecology — Posted on 2019-05-17

1651 Neuron subtype-specific effector gene expression in the Motor Ganglion of Ciona

Gibboney, S.; Kim, K.; Johnson, C. J.; Orvis, J.; Martinez-Feduchi, P.; Lowe, E. K.; Sharma, S.; Stolfi, A.

10.1101/641233 — developmental biology — Posted on 2019-05-17

1652 Single-cell transcriptome analysis revealed a role of the transcription factor TOX in promoting CD8+ T-cell exhaustion in cancer

Kim, K.; Park, S.; Kim, G. M.; Park, S. M.; Park, S. Y.; Kim, D. H.; Park, Y. M.; Koh, Y. W.; Kim, H. R.; Ha, S.-J.; Lee, I.

10.1101/641316 — cancer biology — Posted on 2019-05-17

1653 Hermes: an ensemble machine learning architecture for protein secondary structure prediction

Bliss, L.; Pascoe, B.; Sheppard, S. K.

10.1101/640656 — bioinformatics — Posted on 2019-05-17

1654 Drug safety in pregnancy: review of study approaches required by regulatory agencies

Margulis, A. V.; Anthony, M. S.; Rivero-Ferrer, E.

10.1101/640128 — epidemiology — Posted on 2019-05-17

1655 Low-cost, open-access refractive index mapping of algal cells using the transport of intensity equation

Grant, S. D.; Richford, K.; Burdett, H.; McKee, D.; Patton, B.

10.1101/640755 — biophysics — Posted on 2019-05-17

1656 Assessment of chemotherapy-induced organ damage with 68Ga-labeled duramycin

Rix, A.; Drude, N. I.; Mrugalla, A.; Baskaya, F.; Pak, K. Y.; Gray, B.; Kaiser, H.-J.; Tolba, R. H.; Fiegle, E.; Lederle, W.; Mottaghy, F. M.; Kiessling, F.

10.1101/630459 — pharmacology and toxicology — Posted on 2019-05-17

1657 Liraglutide improves hepatic steatosis and metabolic dysfunctions in a 3-week dietary mouse model of non-alcoholic steatohepatitis

Duparc, T.; Briand, F.; Trenteseaux, C.; Merian, J.; Combes, G.; Najib, S.; Sulpice, T.; Martinez, L. O.

10.1101/640854 — pathology — Posted on 2019-05-17

1658 The Emerging Gait Dysfunction Phenotype in Idiopathic Parkinson’s Disease

Skidmore, F.; Monroe, W.; Hurt, C.; Nicholas, A.; Gerstenecker, A.; Anthony, T.; Jololian, L.; Cutter, G.; Bashir, A.; Denney, T.; Standaert, D.; Disbrow, E.

10.1101/632638 — neuroscience — Posted on 2019-05-17

1659 The nucleosome acidic patch directly interacts with subunits of the Paf1 and FACT complexes and controls chromatin architecture in vivo

Cucinotta, C. E.; Hildreth, A. E.; McShane, B. M.; Shirra, M. K.; Arndt, K. M.

10.1101/637223 — molecular biology — Posted on 2019-05-17

1660 Three-gene PCR and high-resolution melting analysis for differentiating vertebrate species mitochondrial DNA for forensic and biodiversity research pipelines

Ouso, D. O.; Otiende, M. Y.; Jeneby, M. M.; Oundo, J. W.; Bargul, J. L.; Miller, S.; Wambua, L.; Villinger, J.

10.1101/636605 — molecular biology — Posted on 2019-05-17

1661 Do available protein 3D structures reflect human genetic and functional diversity?

Sliwoski, G.; Patel, N.; Sivley, R. M.; Sanders, C. R.; Meiler, J.; Bush, W. S.; Capra, J. A.

10.1101/637744 — genetics — Posted on 2019-05-17

1662 Identification of pathogenic variant enriched regions across genes and gene families

Perez-Palma, E.; May, P.; Iqbal, S.; Niestroj, L.-M.; Du, J.; Heyne, H.; Castrillon, J.; O'Donnell-Luria, A.; Nürnberg, P.; Palotie, A.; Daly, M.; Lal, D.

10.1101/641043 — genetics — Posted on 2019-05-17

1663 Antibiotic interactions shape short-term evolution of resistance in E. faecalis

Dean, Z.; Maltas, J.; Wood, K. B.

10.1101/641217 — evolutionary biology — Posted on 2019-05-17

1664 cRacle: R Tools for Estimating Climate from Vegetation

Harbert, R.; Baryiames, A.

10.1101/641183 — bioinformatics — Posted on 2019-05-17

1665 Hierarchical Discovery of Large-scale and Focal Copy Number Alterations in Low-coverage Cancer Genomes

Khalil, A. I. S.; Khyriem, C.; Chattopadhyay, A.; Sanyal, A.

10.1101/639294 — bioinformatics — Posted on 2019-05-17

1666 Development of a Covalent Inhibitor of Gut Bacterial Bile Salt Hydrolases

Adhikari, A. A.; Seegar, T. C.; Ficarro, S. B.; McCurry, M. D.; Ramachandran, D.; Yao, L.; Chaudhari, S. N.; Ndousse-Fetter, S.; Banks, A. S.; Marto, J. A.; Blacklow, S. C.; Devlin, A. S.

10.1101/640086 — microbiology — Posted on 2019-05-17

1667 High-resolution and high-accuracy topographic and transcriptional maps of the nucleosome barrier

Chen, Z.; Gabizon, R.; Bustamante, C.; Yao, T.; Lee, A.; Diaz-Celis, C.; Koslover, E. F.; Brown, A. I.; Song, A.

10.1101/641506 — biophysics — Posted on 2019-05-17

1668 Sir2 is essential for intergenerational effects of parental diet on offspring metabolism in Drosophila

Hayashi, R.; Takeo, S.; Aigaki, T.

10.1101/641076 — genetics — Posted on 2019-05-17

1669 Large eQTL meta-analysis reveals differing patterns between cerebral cortical and cerebellar brain regions

Sieberts, S. K.; Perumal, T. M.; Carrasquillo, M. M.; Allen, M.; Reddy, J. S.; Hoffman, G. E.; Dang, K. K.; Calley, J.; Ebert, P. J.; Eddy, J.; Wang, X.; Greenwood, A. K.; Mostafavi, S.; the AMP-AD Consortium, ; the CommonMind Consortium (CMC), ; Omberg, L.; Peters, M.; Logsdon, B. A.; De Jager, P. L.; Ertekin-Taner, N.; Mangravite, L. M.

10.1101/638544 — genetics — Posted on 2019-05-17

1670 Characterization of Single Protein Dynamics in Cell Plasma Membrane Derived Polymer Cushioned Lipid Bilayers

Wong, W. C.; Juo, J.-Y.; Liao, Y.-H.; Cheng, C.-Y.; Lin, C.-H.; Hsieh, C.-L.

10.1101/641258 — biophysics — Posted on 2019-05-17

1671 Reducing Unintentional Duplicate Orders using Passive Inline Just-in-Time Decision Support

Horng, S.; Joseph, J.; Calder, S.; Stevens, J. P.; O'Donoghue, A. L.; Safran, C.; Nathanson, L. A.; Leventhal, E.

10.1101/640318 — bioinformatics — Posted on 2019-05-17

1672 How ATP is used by P-glycoprotein to export multiple hydrophobic compounds

Futamata, R.; Ogasawara, F.; Ichikawa, T.; Kimura, Y.; Kioka, N.; Ueda, K.

10.1101/641225 — biochemistry — Posted on 2019-05-17

1673 Allosteric modulation of local reactivity in DNA origami

Suma, A.; Stopar, A.; Nicholson, A. W.; Castronovo, M.; Carnevale, V.

10.1101/640847 — biophysics — Posted on 2019-05-17

1674 Modeling tissue growth with the Stokes equation

Hakkinen, T. J.; Jernvall, J.; Hannukainen, A.

10.1101/641282 — biophysics — Posted on 2019-05-17

1675 Cell-sized confinement controls generation and stability of a protein wave for spatiotemporal regulation in cells

Kohyama, S.; Yoshinaga, N.; Yanagisawa, M.; Fujiwara, K.; Doi, N.

10.1101/641662 — biophysics — Posted on 2019-05-17

1676 When will the cancer start? Elucidating the correlations between cancer initiation times and lifetime cancer risks

Teimouri, H.; Kochugaeva, M.; Kolomeisky, A. B.

10.1101/640284 — biophysics — Posted on 2019-05-17

1677 Development of the first low nanomolar Liver Receptor Homolog-1 agonist through structure-guided design

Mays, S. G.; Flynn, A. R.; Corneilson, J. L.; Okafor, C. D.; Wang, H.; Wang, G.; Huang, X.; Donaldson, H. N.; Millings, E. J.; Polavarapu, R.; Moore, D.; Calvert, J.; Jui, N.; Ortlund, E. A.

10.1101/639732 — pharmacology and toxicology — Posted on 2019-05-17

1678 Methods Matter -- Standard Production Platforms For Recombinant AAV Can Produce Chemically And Functionally Distinct Vectors

Rumachik, N. G.; Malaker, S. A.; Poweleit, N.; Maynard, L. H.; Adams, C. M.; Leib, R. D.; Cirolia, G.; Thomas, D.; Stamnes, S.; Holt, K.; Sinn, P.; May, A. P.; Paulk, N. K.

10.1101/640169 — molecular biology — Posted on 2019-05-17

1679 New Approaches for Quantitative Reconstruction of Radiation Dose in Human Blood Cells

Ghandhi, S. A.; Shuryak, I.; Morton, S. R.; Amundson, S. A.; Brenner, D. J.

10.1101/640052 — genomics — Posted on 2019-05-17

1680 High-Throughput Single-Molecule R-loop Footprinting Reveals Principles of R-loop Formation

Malig, M.; Hartono, S. R.; Giafaglione, J. M.; Sanz, L. A.; Chedin, F.

10.1101/640094 — genetics — Posted on 2019-05-17

1681 Lexical landscapes as large in silico data forexamining advanced properties of fitness landscapes

Meszaros, V. A.; Miller-Dickson, M.; Ogbunugafor, C. B.

10.1101/640151 — evolutionary biology — Posted on 2019-05-17

1682 Hygiene Hampers Competitive Release Of Resistant Bacteria In The Commensal Microbiota

Aspenberg, M.; Maad Sasane, S.; Nilsson, F.; Brown, S.; Wollein Waldetoft, K.

10.1101/639443 — evolutionary biology — Posted on 2019-05-17

1683 The fitness cost of mismatch repair mutators in Saccharomyces cerevisiae: partitioning the mutational load

Galeota-Sprung, B.; Guindon, B.; Sniegowski, P.

10.1101/639765 — evolutionary biology — Posted on 2019-05-17

1684 Distinct antagonist-bound inactive states underlie the divergence in the structures of the dopamine D2 and D3 receptors

Lane, J. R.; Abramyan, A. M.; Verma, R. K.; Lim, H. D.; Javitch, J. A.; Shi, L.

10.1101/640870 — biophysics — Posted on 2019-05-17

1685 A gene filter for comparative analysis of single-cell RNA-sequencing trajectory datasets

Wang, Y.; Thong, T.; Saligrama, V.; Colacino, J.; Balzano, L.; Scott, C.

10.1101/637488 — bioinformatics — Posted on 2019-05-17

1686 Fungal communities living within leaves of native Hawaiian dicots are structured by landscape-scale variables as well as by host plants

Darcy, J. L.; Cobian, G. M.; Swift, S. O. I.; Zahn, G. L.; Perry, B. A.; Amend, A. A.

10.1101/640029 — ecology — Posted on 2019-05-17

1687 DNSS2: improved ab initio protein secondary structure prediction using advanced deep learning architectures

Hou, J.; Guo, Z.; Cheng, J.

10.1101/639021 — bioinformatics — Posted on 2019-05-17

1688 Community structure ecosystem function relationships in the Congo Basin methane cycle depend on the physiological scale of function

Meyer, K. M.; Hopple, A. M.; Klein, A. M.; Morris, A. M. H.; Bridgham, S.; Bohannan, B. J. M.

10.1101/639989 — ecology — Posted on 2019-05-17

1689 Three-dimensional morphological analysis of the dynamic digestive system in the green brittle star

Wakita, D.; Naniwa, K.; Aonuma, H.

10.1101/640235 — physiology — Posted on 2019-05-17

1690 Disruption of the CSF-1-CSF-1R axis alters cerebellar microglia and is associated with motor and social interaction defects

Kana, V.; Desland, F. A.; Casanova-Acebes, M.; Ayata, P.; Badimon, A.; Nabel, E.; Yamamuro, K.; Sneeboer, M.; Tan, I.-L.; Flanigan, M.; Rose, S. A.; Chang, C.; Leader, A.; LeBourhis, H.; Sweet, E.; Tung, N.; Wroblewska, A.; Lavin, Y.; See, P.; Baccarini, A.; Ginhoux, F.; Chitu, V.; Stanley, E. R.; Russo, S.; Yue, Z.; Brown, B.; Joyner, A. L.; De Witte, L.; Morishita, H.; Schaefer, A.; Merad, M.

10.1101/639526 — neuroscience — Posted on 2019-05-17

1691 Dissection of central clock function in Drosophila through cell-specific CRISPR-mediated clock gene disruption

Shirasu-Hiza, M.; Delventhal, R.; Pantalia, M. M.; O'Connor, R. M.; Ulgherait, M.; Kim, H. X.; Basturk, M. K.; Canman, J. C.

10.1101/640011 — genomics — Posted on 2019-05-17

1692 Complex ecological phenotypes on phylogenetic trees: a hidden Markov model for comparative analysis of multivariate count data

Grundler, M. C.; Rabosky, D. L.

10.1101/640334 — evolutionary biology — Posted on 2019-05-17

1693 An automated model reduction tool to guide the design and analysis of synthetic biological circuits

Pandey, A.; Murray, R. M.

10.1101/640276 — synthetic biology — Posted on 2019-05-17

1694 Loss of interplay: Frontoparietal dynamics underlie working memory deficits in multiple sclerosis

Figueroa-Vargas, A.; Carcamo, C.; Henriquez-Ch., R. A.; Zamorano, F.; Ciampi, E.; Uribe, R.; Macarena, V.; Aboitiz, F.; Billeke, P.

10.1101/639930 — neuroscience — Posted on 2019-05-17

1695 Decoding images in the mind’s eye: The temporal dynamics of visual imagery

Shatek, S. M.; Grootswagers, T.; Robinson, A. K.; Carlson, T. A.

10.1101/637603 — neuroscience — Posted on 2019-05-17

1696 Distinct sensorimotor feedback loops for dynamic and static control of primate precision grip

Oya, T.; Takei, T.; Seki, K.

10.1101/640201 — neuroscience — Posted on 2019-05-17

1697 Genome replication dynamics of a bacteriophage and its satellite reveal strategies for parasitism and viral restriction

Barth, Z.; Silvas, T.; Angermeyer, A.; Seed, K.

10.1101/639039 — microbiology — Posted on 2019-05-17

1698 DNA accessibility is not the primary determinant of chromatin-mediated gene regulation

Chereji, R. V.; Eriksson, P. R.; Ocampo, J.; Clark, D. J.

10.1101/639971 — genomics — Posted on 2019-05-17

1699 Ultrastructural details of mammalian chromosome architecture

Krietenstein, N.; Abraham, S.; Venev, S.; Abdennur, N.; Gibcus, J.; Hsieh, T.-H.; Parsi, K. M.; Yang, L.; Maehr, R.; Mirny, L.; Dekker, J.; Rando, O.

10.1101/639922 — genomics — Posted on 2019-05-17

1700 Resolving the 3D landscape of transcription-linked mammalian chromatin folding

Hsieh, T.-H. S.; Slobodyanyuk, E.; Hansen, A. S.; Cattoglio, C.; Rando, O. J.; Tjian, R.; Darzacq, X.

10.1101/638775 — genomics — Posted on 2019-05-17

1701 Complex evolutionary origins of specialized metabolite gene cluster diversity among the plant pathogenic fungi of the Fusarium graminearum species complex

Tralamazza, S.; Oliveira Rocha, L.; Oggenfuss, U.; Correa, B.; Croll, D.

10.1101/639641 — genomics — Posted on 2019-05-17

1702 Testing the omnigenic model for a behavioral trait in Drosophila melanogaster

Zhang, W.; Reeves, R. G.; Tautz, D.

10.1101/639955 — genomics — Posted on 2019-05-17

1703 Tracking of antibiotic resistance transfer and rapid plasmid evolution in a hospital setting by Nanopore sequencing

Peter, S.; Bosio, M.; Gross, C.; Bezdan, D.; Gutierrez, J.; Oberhettinger, P.; Liese, J.; Vogel, W.; Doerfel, D.; Berger, L.; Marschal, M.; Willmann, M.; Gut, I.; Gut, M.; Autenrieth, I.; Ossowski, S.

10.1101/639609 — genomics — Posted on 2019-05-17

1704 Single-cell Transcriptome Mapping Identifies Common and Cell-type Specific Genes Affected by Acute Delta9-tetrahydrocannabinol in Humans

Hu, Y.; Ranganathan, M.; Shu, C.; Liang, X.; Ganesh, S.; Yan, C.; Zhang, X.; Aouizerat, B. E.; Krystal, J. H.; D'Souza, D. C.; Xu, K.

10.1101/638254 — genetics — Posted on 2019-05-17

1705 Changes in the microbial community of Lubomirskia baicalensis affected by Brown Rot Disease

Rorex, C.; Nalian, A.; Belikov, S.; Natalia, B.; Chernogor, L.; Khanaev, I.; Martynova-Van Kley, A.

10.1101/641811 — ecology — Posted on 2019-05-17

1706 Integrating proteomics and genomics into systems genetics provides novel insights into the mechanisms of drought tolerance in maize

Blein-Nicolas, M.; Negro, S. S.; Balliau, T.; Welcker, C.; Cabrera-Bosquet, L.; Nicolas, S. D.; Charcosset, A.; Zivy, M.

10.1101/636514 — systems biology — Posted on 2019-05-17

1707 Overexpression of Medicago sativa glutamate-semialdehyde aminotransferase (GSA) gene in tobacco increased photosynthesis efficiency

Khozaei, M.; Ghasemzadeh, M.; Amiri, H.

10.1101/640425 — plant biology — Posted on 2019-05-17

1708 Molecular and transcriptional structure of the petal and leaf circadian clock in Petunia hybrida

Terry, M. I.; Carrera-Alesina, M.; Weiss, J.; Egea-Cortines, M.

10.1101/641639 — plant biology — Posted on 2019-05-17

1709 A cereal aphid effector promotes barley susceptibility in a species-specific manner through suppression of defence gene expression.

Escudero-Martinez, C.; Rodriguez, P.; Santos, P.; Stephens, J.; Bos, J.

10.1101/639476 — plant biology — Posted on 2019-05-17

1710 A bacterial effector protein prevents MAPK-mediated phosphorylation of SGT1 to suppress plant immunity

Yu, G.; Xian, L.; Xue, H.; Yu, W.; Rufian, J.; Sang, Y.; Morcillo, R.; Wang, Y.; Macho, A.

10.1101/641241 — plant biology — Posted on 2019-05-17

1711 Genotype-dependent and non-gradient patterns of RSV gene expression

Piedra, F.-A.; Qiu, X.; Teng, M.; Avadhanula, V.; Machado, A.; Kim, D.-K.; Hixson, J.; Bahl, J.; Piedra, P.

10.1101/641878 — molecular biology — Posted on 2019-05-17

1712 The contribution of ancient admixture to reproductive isolation between European sea bass lineages

Duranton, M.; Allal, F.; Valiere, S.; Bouchez, O.; Bonhomme, F.; Gagnaire, P.-A.

10.1101/641829 — evolutionary biology — Posted on 2019-05-17

1713 A helminth chitinase structurally similar to mammalian chitinase displays immunomodulatory properties

Ebner, F.; Balster, K.; Janek, K.; Niewienda, A.; Malecki, P. H.; Weiss, M. S.; Sutherland, T. E.; Heuser, A.; Kühl, A. A.; Zentek, J.; Hofmann, A.; Hartmann, S.

10.1101/641837 — immunology — Posted on 2019-05-17

1714 A multi-level society comprised of one-male and multi-male core units in an African colobine (Colobus angolensis ruwenzorii)

Stead, S. M.; Teichroeb, J.

10.1101/641746 — evolutionary biology — Posted on 2019-05-17

1715 Exploring the Mechanism of Olfactory Recognition at the Initial Stage by Modeling the Emission Spectrum of Electron Transfer

Liu, S.; Fu, R.; Li, G.

10.1101/641738 — biophysics — Posted on 2019-05-17

1716 A general approach for identifying protein epitopes targeted by antibody repertoires using whole proteomes

Paull, M.; Johnston, T.; Ibsen, K. N.; Bozekowski, J. D.; Daugherty, P. S.

10.1101/641787 — bioinformatics — Posted on 2019-05-17

1717 Deterioration of dry skin in arthritis model mice via stress-induced changes in immune cells in the thymus and spleen

Goto, K.; Hiramoto, K.; Takada, I.; Ooi, K.

10.1101/641720 — physiology — Posted on 2019-05-17

1718 Development of rice conidiation media for Ustilaginoidea virens

Wang, Y.; Wang, F.; Xie, S.; Liu, Y.; Qu, J.; Huang, J.; Yin, W.-X.; Luo, C.

10.1101/641753 — microbiology — Posted on 2019-05-17

1719 Landscape of tumor-infiltrating immune cells in human immunogenic cancers: B cells are inversely associated with CD8T cells, but positively correlated with Treg cells

Chae, Y. K.; Bae, W.; Jung, M.; Kim, Y. S.; Anker, J. F.; Tamragouri, K.; Matsangou, M.; Giles, F. J.

10.1101/641712 — cancer biology — Posted on 2019-05-17

1720 Trypanosoma brucei J protein 2 functionally cooperates with the cytosolic Hsp70.4 and Hsp70 proteins

Bentley, S. J.; Boshoff, A.

10.1101/641704 — molecular biology — Posted on 2019-05-17

1721 Sequence and immunologic conservation of Anaplasma marginale OmpA within strains from Ghana as compared to the predominant OmpA variant

Futse, J. E.; Buami, G.; Kayang, B. B.; Koku, R.; Palmer, G.; Graca, T.; Noh, S. M.

10.1101/641696 — microbiology — Posted on 2019-05-17

1722 Paraoxonase and acylated homoserine lactones in urine from patients with urinary tract infections

Lafleur, J. E.; Amdur, R. L.

10.1101/641688 — immunology — Posted on 2019-05-17

1723 Stereomotion processing in the non-human primate brain

Hejja-Brichard, Y.; Rima, S.; Rapha, E.; Durand, J.-B.; Cottereau, B. R.

10.1101/638155 — neuroscience — Posted on 2019-05-17

1724 Identification of a Nidovirales Orf1a N7-guanine cap methyltransferase signature-sequence as a genetic marker of large RNA genome Tobaniviridae

Ferron, F. P.; Debat, H.; Decroly, E.; Canard, B.

10.1101/639369 — bioinformatics — Posted on 2019-05-17

1725 Inhibition of ADORA1 attenuates hepatic steatosis by gut microbiota-derived acetic acid from Astragalus polysaccharides

10.1101/639195 — physiology — Posted on 2019-05-17

1726 Dissociable effects of visual crowding on the perception of colour and motion

Greenwood, J. A.; Parsons, M. J.

10.1101/639450 — neuroscience — Posted on 2019-05-17

1727 Synergy pattern of short cationic antimicrobial peptides against multidrug-resistant Pseudomonas aeruginosa

Ruden, S.; Rieder, A.; Schwartz, T.; Mikut, R.; Hilpert, K.

10.1101/639286 — microbiology — Posted on 2019-05-17

1728 Century long fertilization reduces stochasticity controlling grassland microbial community succession

Liang, Y.; Ning, D.; Lu, Z.; Zhang, N.; Hale, L.; Wu, L.; Clark, I. M.; McGrath, S. P.; Storkey, J.; Hirsch, P. R.; Sun, B.; Zhou, J.

10.1101/638908 — ecology — Posted on 2019-05-17

1729 Feasibility of a surface-coated lung model for the quantification of active agent deposition for preclinical studies

Doerner, P.; Mueller, P. M.; Reiter, J.; Gruhlke, M. C.; Slusarenko, A. J.; Schroeder, W.; Klaas, M.

10.1101/639245 — bioengineering — Posted on 2019-05-17

1730 Topographic preservation of functional connectivity among the association areas in the human cerebral cortex

Koide-Majima, N.; Nishimoto, S.

10.1101/639252 — neuroscience — Posted on 2019-05-17

1731 Neural oscillations while remembering traumatic memories in PTSD

Reuveni, I.; Herz, N.; Bonne, O.; Peri, T.; Schreiber, S.; Harpaz, Y.; Goldstein, A.

10.1101/639310 — neuroscience — Posted on 2019-05-17

1732 The soursop genome and comparative genomics of basalangiosperms provide new insights on evolutionaryincongruence

Strijk, J. S.; Hinsinger, D.; Roeder, M.; Chatrou, L.; Couvreur, T.; Erkens, R.; Sauquet, H.; Pirie, M.; Thomas, D. C.; Cao, K.

10.1101/639153 — evolutionary biology — Posted on 2019-05-17

1733 Detecting Novel Sequence Signals in Targeting Peptides Using Deep Learning

Almagro Armenteros, J. J.; Salvatore, M.; Winther, O.; Emanuelsson, O.; von Heijne, G.; Elofsson, A.; Nielsen, H.

10.1101/639203 — bioinformatics — Posted on 2019-05-17

1734 Malaria.tools: comparative genomic and transcriptomic database for Plasmodium species

Tan, Q. W.; Mutwil, M.

10.1101/639179 — bioinformatics — Posted on 2019-05-17

1735 Novel strategy for treating neurotropic viral infections using hypolipidemic drug Atorvastatin

Mallick, S.; Chakraborty, S.; Hazra, B.; Dev, S.; Mukherjee, S.; Wani, M. A.; Basu, A.

10.1101/639096 — microbiology — Posted on 2019-05-17

1736 Carbon starvation induces the expression of PprB-regulated genes in Pesudomonas aeruginosa

Jin, F.; Wang, C.; Chen, W.; Xia, A.; Zhang, R.; Huang, Y.; Yang, S.; Ni, L.

10.1101/639112 — microbiology — Posted on 2019-05-17

1737 Dynamic Changes of G-CSF etc. Nine Cytokines in Mouse Bloodstream Infection Models of Staphylococcus aureus and Klebsiella pneumoniae and their Clinical Performances

He, S.; Yang, M.; Li, X.; Chen, C.; Ma, Y.; Wang, C.; Yang, J.; Wang, C.

10.1101/639104 — microbiology — Posted on 2019-05-17

1738 Heterogeneous multi-scale framework for cancer systems models and clinical applications

Ghosh, A.; Radhakrishnan, R.

10.1101/633933 — systems biology — Posted on 2019-05-16

1739 A light-dependent molecular link between competition cues and defense responses in plants

Fernandez-Milmanda, G. L.; Crocco, C. D.; Reichelt, M.; Mazza, C. A.; Koellner, T. G.; Zhang, T.; Cargnel, M. D.; Lichy, M. Z.; Koo, A. J.; Austin, A. T.; Gershenzon, J.; Ballare, C. L.

10.1101/637504 — plant biology — Posted on 2019-05-16

1740 Transcriptional Signatures of the Hierarchical Chronnectome Organization in the Human Brain

Liu, J.; Xia, M.; Wang, X.; Liao, X.; He, Y.

10.1101/637942 — neuroscience — Posted on 2019-05-16

1741 Efficient horizontal transmission without viral super-spreaders may cause the high prevalence of STLV-1 infection in Japanese macaques

Murata, M.; Yasunaga, J.-i.; Washizaki, A.; Seki, Y.; Tan, W. K.; Mizukami, T.; Matsuoka, M.; Akari, H.

10.1101/639062 — microbiology — Posted on 2019-05-16

1742 Sensitive cells extend antibiotic-driven containment of drug-resistant bacterial populations

Hansen, E.; Karslake, J.; Woods, R. J.; Read, A. F.; Wood, K. B.

10.1101/638924 — microbiology — Posted on 2019-05-16

1743 Acute phase protein, α-1-acid glycoprotein (AGP-1), has differential effects on TLR-2 and TLR-4 mediated responses.

Mosale, S. S.; Abhilasha, K. V.; Jacob, S. P.; Chaithra, V. H.; Basrur, V.; Willard, B.; McIntyre, T. M.; Prabhu, K. S.; Marathe, G. K.

10.1101/634295 — immunology — Posted on 2019-05-16

1744 Bayesian multivariate reanalysis of large genetic studies identifies many new associations

Turchin, M. C.; Stephens, M.

10.1101/638882 — genomics — Posted on 2019-05-16

1745 OncoOmics approaches to reveal essential genes in breast cancer: a panoramic view from pathogenesis to precision medicine

Lopez-Cortes, A.; Paz-y-Mino, C.; Guerrero, S.; Cabrera-Andrade, A.; Barigye, S. J.; Munteanu, C. R.; Gonzalez-Diaz, H.; Pazos, A.; Perez-Castillo, Y.; Tejera, E.

10.1101/638866 — genomics — Posted on 2019-05-16

1746 Genetic diversity by ISSR of two endemic quillworts (Isoetes L.) species from Amazon Iron Rocky Outcrops, Isoetes cangae e I. serracarajensis

10.1101/635771 — genetics — Posted on 2019-05-16

1747 Hitting a moving target: Microbial evolutionary strategies in a dynamic ocean

Walworth, N. G.; Zakem, E. J.; Dunne, J. P.; Collins, S.; Levine, N. M.

10.1101/637272 — evolutionary biology — Posted on 2019-05-16

1748 A Novel L-Serine Exporter and Its Positive Regulator in Corynebacterium glutamicum

Zhang, X.; Gao, Y.; Chen, Z.; Xu, G.; Zhang, X.; Li, H.; Shi, J.-S.; Koffas, M. A.; Xu, Z.

10.1101/639088 — bioengineering — Posted on 2019-05-16

1749 From morphogenesis to pathogenesis: A cellulose loosening protein is one of the most widely distributed tools in nature

Chase, W. R.; Zhaxybayeva, O.; Rocha, J.; Cosgrove, D. J.; Shapiro, L. R.

10.1101/637728 — evolutionary biology — Posted on 2019-05-16

1750 AI on animals: AI-assisted animal-borne logger never misses the moments that biologists want

Korpela, J. M.; Suzuki, H.; Matsumoto, S.; Mizutani, Y.; Samejima, M.; Maekawa, T.; Nakai, J.; Yoda, K.

10.1101/630053 — ecology — Posted on 2019-05-16

1751 Bayesian inference of differentially expressed transcripts and their abundance from multi-condition RNA-seq data

Chen, X.

10.1101/638817 — bioinformatics — Posted on 2019-05-16

1752 Task-Based Functional Connectomes Predict Cognitive Phenotypes Across Psychiatric Disease

Barron, D. S.; Gao, S.; Dadashkarimi, J.; Greene, A. S.; Spann, M. N.; Noble, S.; Lake, E.; Krystal, J. H.; Constable, R. T.; Scheinost, D.

10.1101/638825 — neuroscience — Posted on 2019-05-16

1753 The Prevalence and Impact of Model Violations in Phylogenetics

Naser-Khdour, S.; Minh, B. Q.; Zhang, W.; Stone, E.; Lanfear, R.

10.1101/460121 — molecular biology — Posted on 2019-05-16

1754 When tension is exciting: an EEG exploration of excitement in music

Turrell, A.; Halpern, A. R.; Javadi, A.-H.

10.1101/637983 — neuroscience — Posted on 2019-05-16

1755 Non-Uniformity of Projection Distributions Attenuates Resolution in Cryo-EM

Baldwin, P.; Lyumkis, D.

10.1101/635938 — biophysics — Posted on 2019-05-16

1756 A sparse negative binomial classifier with covariateadjustment for RNA-seq data

Rahman, M. T.; Huang, H.-E.; Tai, A.-S.; Hsieh, W.-P.; Tseng, G.

10.1101/636340 — genomics — Posted on 2019-05-16

1757 Coloring Single Nanoparticle Trajectory in Live Cell with its Own History: a Presuppositionless Approach

Zhao, H.; Huang, Z.; Ge, F.; Shi, X.; Bin, X.; Liao, X.; Wang, Z.; Zhang, S.; Zhang, X.; He, Y.

10.1101/580480 — biophysics — Posted on 2019-05-16

1758 In situ measurement of absolute concentrations by Normalized Raman Imaging

Oh, S.; Lee, C.; Yang, W.; Li, A.; Ran, C.; Yin, W.; Tabin, C. J.; Fu, D.; Xie, X. S.; Kirschner, M. W.

10.1101/629543 — bioengineering — Posted on 2019-05-16

1759 Regulation of CNS regeneration-associated genes is driven by a temporally changing cast of transcription factors

Dhara, S. P.; Rau, A.; Flister, M. J.; Recka, N. M.; Laiosa, M. D.; Auer, P. L.; Udvadia, A. J.

10.1101/638734 — neuroscience — Posted on 2019-05-16

1760 Improved CUT&RUN chromatin profiling and analysis tools

Meers, M. P.; Bryson, T. D.; Henikoff, S.

10.1101/569129 — molecular biology — Posted on 2019-05-16

1761 OMEGA: a software tool for the management, analysis, and dissemination of intracellular trafficking data that incorporates motion type classification and quality control

Rigano, A.; Galli, V.; Clark, J. M.; Pereira, L. E.; Grossi, L.; Luban, J.; Giulietti, R.; Leidi, T.; Hunter, E.; Valle, M.; Sbalzarini, I. F.; Strambio-De-Castillia, C.

10.1101/251850 — bioinformatics — Posted on 2019-05-16

1762 An All-to-All Approach to the Identification of Sequence-Specific Readers for Epigenetic DNA Modifications on Cytosine

Song, G.; Wang, G.; Luo, X.; Cheng, Y.; Song, Q.; Wan, J.; Moore, C.; Song, H.; Jin, P.; Qian, J.; Zhu, H.

10.1101/638700 — systems biology — Posted on 2019-05-16

1763 Hemozoin produced by mammals confers heme tolerance

Pek, R.; Yuan, X.; Rietzschel, N.; Zhang, J.; Jackson, L.; Nishibori, E.; Ribeiro, A.; Simmons, W.; Jagadeesh, J.; Sugimoto, H.; Alam, M. Z.; Garrett, L.; Haldar, M.; Ralle, M.; Phillips, J.; Bodine, D.; Hamza, I.

10.1101/629725 — pathology — Posted on 2019-05-16

1764 A dynamical systems framework to uncover the drivers of large-scale cortical activity

Ashourvan, A.; Pequito, S.; Bertolero, M.; Kim, J. Z.; Bassett, D. S.; Litt, B.

10.1101/638718 — neuroscience — Posted on 2019-05-16

1765 Rare microbes from diverse Earth biomes dominate community activity

Sachdeva, R.; Campbell, B. J.; Heidelberg, J. F.

10.1101/636373 — microbiology — Posted on 2019-05-16

1766 Assortative mating in hybrid zones is remarkably ineffective in promoting speciation

Irwin, D. E.

10.1101/637678 — evolutionary biology — Posted on 2019-05-16

1767 Practical considerations for improved reliability and precision during compound specific analysis of δ15N in amino acids using a single combined oxidation-reduction reactor.

Riekenberg, P.; van der Meer, M.; Schouten, S.

10.1101/638098 — ecology — Posted on 2019-05-16

1768 Human Demographic Outcomes of a Restored Agro-Ecological Balance

Wyckhuys, K. A.; Burra, D. D.; Pretty, J.; Neuenschwander, P.

10.1101/637777 — ecology — Posted on 2019-05-16

1769 Hip retraction enhances walking stability on a ramp: an equilibrium point hypothesis-based study

Bahramian, A.; Shamsi, E.; Towhidkhah, F.; Jafari, S.

10.1101/638635 — bioengineering — Posted on 2019-05-16

1770 Ordered insertional mutagenesis at a single genomic site enables lineage tracing and analog recording in mammalian cells

Loveless, T. B.; Grotts, J. H.; Schechter, M. W.; Forouzmand, E.; Agahi, B. S.; Carlson, C. K.; Liang, G.; Xie, X.; Liu, C. C.

10.1101/639120 — synthetic biology — Posted on 2019-05-16

1771 Protracted development of visuo-proprioceptive integration for uni-and bimanual motor coordination

Martel, M.; Ossandon, J. P.; Habets, B.; Heed, T.

10.1101/601435 — neuroscience — Posted on 2019-05-16

1772 Multiple non-auditory cortical regions innervate the auditory midbrain

Olthof, B. M.; Rees, A.; Gartside, S. E.

10.1101/627232 — neuroscience — Posted on 2019-05-16

1773 Interaction of Plasmodium falciparum Casein kinase 1 (PfCK1) with components of host cell protein trafficking machinery.

Batty, M. B.; Schittenhelm, R. B.; Doerig, C.; Garcia-Bustos, J.

10.1101/617571 — microbiology — Posted on 2019-05-16

1774 Using Earth Mover’s Distance for Viral Outbreak Investigations

Melnyk, A.; Knyazev, S.; Vannberg, F.; Bunimovich, L.; Skums, P.; Zelikovsky, A.

10.1101/628859 — bioinformatics — Posted on 2019-05-16

1775 PATHWAYS ANALYZER: Design of a Tool for the Synthetic Assembly of Escherichia Coli K-12 MG1655 Bacteria for Biofuel Production

Vasquez, L.; Alvarado, R.; Orozco, A.

10.1101/634998 — synthetic biology — Posted on 2019-05-16

1776 Propagation of cortical activity via open-loop intrathalamic architectures: a computational analysis

Brown, J. W.; Taheri, A.; Kenyon, R. V.; Berger-Wolf, T.; Llano, D. A.

10.1101/574178 — neuroscience — Posted on 2019-05-16

1777 Multiple genetic loci affect place learning and memory performance in Drosophila melanogaster

Williams-Simon, P. A.; Posey, C.; Mitchell, S.; Ng'oma, E.; Mrkvicka, J.; Zars, T.; King, E. G.

10.1101/580092 — genetics — Posted on 2019-05-16

1778 An Open-Hardware sample mounting solution for inverted light-sheet microscopes with large detection objective lenses

Russell, C.; Rees, E. J.

10.1101/636977 — cell biology — Posted on 2019-05-16

1779 Quantifying the dynamics of hematopoiesis by in vivo IdU pulse-chase, mass cytometry and mathematical modeling

Erez, A.; Mukherjee, R.; Altan-Bonnet, G.

10.1101/552489 — immunology — Posted on 2019-05-16

1780 Kinetics of cytokine receptor trafficking determine signaling and functional selectivity

Martinez-Fabregas, J.; Wilmes, S.; Wang, L.; Hafer, M.; Pohler, E.; Lokau, J.; Garbers, C.; Cozzani, A.; Piehler, J.; Kazemian, M.; Mitra, S.; Moraga, I.

10.1101/638031 — immunology — Posted on 2019-05-16

1781 BaRTv1.0: an improved barley reference transcript dataset to determine accurate changes in the barley transcriptome using RNA-seq

10.1101/638106 — genomics — Posted on 2019-05-16

1782 SimRVSequences: an R package to simulate genetic sequence data for pedigrees

Nieuwoudt, C.; Brooks-Wilson, A.; Graham, J.

10.1101/534552 — genetics — Posted on 2019-05-16

1783 Association of NQO1 C609T (Pro187Ser) with risk of Oral Submucous Fibrosis in Eastern Indian population

Mukherjee, S.; Katarkar, A.; Ray, J. G.; Chaudhuri, K.

10.1101/046052 — genetics — Posted on 2019-05-16

1784 Convergent seed color adaptation during repeated domestication of an ancient new world grain

Stetter, M. G.; Vidal-Villarejo, M.; Schmid, K. J.

10.1101/547943 — evolutionary biology — Posted on 2019-05-16

1785 The Polycomb group protein Ring1 regulates dorsoventral patterning of the mouse telencephalon

Eto, H.; Kishi, Y.; Koseki, H.; Gotoh, Y.

10.1101/639492 — developmental biology — Posted on 2019-05-16

1786 Synaptic Proteome Alterations in the Primary Auditory Cortex of Schizophrenia

MacDonald, M.; Garver, M.; Newman, J.; Sun, Z.; Kannarkat, J.; Salisbury, R.; Glausier, J.; Ding, Y.; Lewis, D. A.; Yates, N.; Sweet, R. A.

10.1101/639914 — neuroscience — Posted on 2019-05-16

1787 Identification of microRNA-target interactions for antioxidant defense response under drought stress by high-throughput sequencing in Zanthoxylum bungeanum Maxim.

Fei, X.; Hu, H.; Li, J.; LIu, Y.; Wei, A.

10.1101/637538 — cell biology — Posted on 2019-05-16

1788 Fear in dreams and in wakefulness: evidence for day/night affective homeostasis

Sterpenich, V.; Perogamvros, L.; Tononi, G.; Schwartz, S.

10.1101/534099 — neuroscience — Posted on 2019-05-16

1789 Multiplex immunofluorescence methods in neurodegenerative diseases

Ehrenberg, A. J.; Morales, D. O.; Tejedor, J. S.; Mulder, J.; Grinberg, L. T.

10.1101/533547 — pathology — Posted on 2019-05-16

1790 Helix formation during the coupled binding and folding of intrinsically disordered proteins monitored by synchrotron-radiation circular dichroism spectroscopy

Karlsson, E.; Andersson, E.; Jones, N. C.; Hoffmann, S. V.; Jemth, P.; Kjaergaard, M.

10.1101/640599 — biophysics — Posted on 2019-05-16

1791 The axonal actin-spectrin lattice acts as a tension buffering shock absorber

Dubey, S.; Bhembre, N.; Bodas, S.; Ghose, A.; Callan-Jones, A.; Pullarkat, P. A.

10.1101/510560 — biophysics — Posted on 2019-05-16

1792 The calcium channel subunit α2δ-3 organizes synapses via a novel activity-dependent, autocrine BMP signaling pathway

Hoover, K. M.; Gratz, S. J.; Herrmann, K. A.; Qi, N.; Liu, A.; Perry-Richardson, J. J.; Vanderzalm, P. J.; O'Connor-Giles, K. M.; Broihier, H. T.

10.1101/640664 — neuroscience — Posted on 2019-05-16

1793 qgg: an R package for large-scale quantitative genetic analyses

Rohde, P. D.; Sorensen, I. F.; Sorensen, P.

10.1101/503631 — genetics — Posted on 2019-05-16

1794 Asexual reproduction drives the reduction of transposable element load

Bast, J.; Jaron, K.; Schuseil, D.; Roze, D.; Schwander, T.

10.1101/501361 — evolutionary biology — Posted on 2019-05-16

1795 NMDA receptor activation induces long-term potentiation of glycine synapses

Kloc, M. L.; Pradier, B.; Chirila, A. M.; Kauer, J. A.

10.1101/639716 — neuroscience — Posted on 2019-05-16

1796 Genome-wide increased copy number is associated with emergence of super-fit clones of the Irish potato famine pathogen Phytophthora infestans

Knaus, B.; Tabima, J.; Shakya, S.; Judelson, H.; Grunwald, N.

10.1101/633701 — microbiology — Posted on 2019-05-16

1797 Alteration of Gut Microbiome in Lung Cancer Patients

Li, M.; Yu, F.; Chen, X.; Zhou, H.; Wei, X.; Liu, Y.; Liu, Y.; Tang, L.; Wen, S.; Yuan, J.; Chen, J.

10.1101/640359 — microbiology — Posted on 2019-05-16

1798 Novel differential linear B-cell epitopes to identify Zika and dengue virus infections in patients

Amrun, S. N.; Yee, W.-X.; Abu Bakar, F.; Lee, B.; Kam, Y.-W.; Lum, F.-M.; Tan, J. J. L.; Lim, V. W. X.; Watthanaworawit, W.; Ling, C.; Nosten, F.; Renia, L.; Leo, Y.-S.; Ng, L. F. P.

10.1101/639542 — immunology — Posted on 2019-05-16

1799 Size and structure of the sequence space of repeat proteins

Marchi, J.; Galpern, E. A.; Espada, R.; Ferreiro, D. U.; Walczak, A. M.; Mora, T.

10.1101/635581 — biophysics — Posted on 2019-05-16

1800 ARGONAUTE5 Mediates Fine-Tuning of Vegetative-to-Reproductive Phase Transition Through Its Interaction with miR156 in Arabidopsis

Roussin-Leveillee, C.; Silva-Martins, G.; Moffett, P.

10.1101/640680 — plant biology — Posted on 2019-05-16

1801 Interspecific plant competition mediates the metabolic and ecological signature of a plant-herbivore interaction under warming and elevated CO2

Van De Velde, H.; AbdElgawad, H.; Asard, H.; Beemster, G.; Selim, S.; Nijs, I.; Bonte, D.

10.1101/420901 — ecology — Posted on 2019-05-16

1802 Intrinsic functional reorganization of the attention network in the blind

Qin, W.; Liu, Y.; Jiang, T.; Yu, C.

10.1101/245399 — neuroscience — Posted on 2019-05-16

1803 Transcriptome and chromatin structure annotation of liver, CD4+ and CD8+ T cells from four livestock species.

Foissac, S.; Djebali, S.; Munyard, K.; Vialaneix, N.; Rau, A.; Muret, K.; Esquerre, D.; Zytnicki, M.; Derrien, T.; Bardou, P.; Blanc, F.; Cabau, C.; Crisci, E.; Dhorne-Pollet, S.; Drouet, F.; Faraut, T.; Gonzalez, I.; Goubil, A.; Lacroix-Lamande, S.; Laurent, F.; Marthey, S.; Marti-Marimon, M.; Momal-Leisenring, R.; Mompart, F.; Quere, P.; Robelin, D.; San Cristobal, M.; Tosser-Klopp, G.; Vincent-Naulleau, S.; Fabre, S.; Pinard-Van der Laan, M.-H.; Klopp, C.; Tixier-Boichard, M.; Acloque, H.; Lagarrigue, S.; Giuffra, E.

10.1101/316091 — genomics — Posted on 2019-05-16

1804 Gene knock-ins in Drosophila using homology-independent insertion of universal donor plasmids

Bosch, J.; Colbeth, R.; Zirin, J.; Perrimon, N.

10.1101/639484 — genetics — Posted on 2019-05-16

1805 Selective sweeps under dominance and inbreeding

Hartfield, M.; Bataillon, T.

10.1101/318410 — evolutionary biology — Posted on 2019-05-16

1806 Modality-specific circuits for skylight orientation in the fly visual system

Sancer, G.; Kind, E.; Plazaola, H.; Balke, J.; Pham, T.; Hasan, A.; Münch, L.; Mathejczyk, T. F.; Wernet, M. F.

10.1101/638171 — neuroscience — Posted on 2019-05-16

1807 BaRTv1.0: an improved barley reference transcript dataset to determine accurate changes in the barley transcriptome using RNA-seq

10.1101/638106 — genomics — Posted on 2019-05-16

1808 A new model for the implementation of positive and negative emotion recognition

Sorinas, J.; Fernandez-Troyano, J. C.; Val-Calvo, M.; Ferrandez, J. M.; Fernandez, E.

10.1101/638205 — neuroscience — Posted on 2019-05-16

1809 A novel workflow to improve multi-locus genotyping of wildlife species: an experimental set-up with a known model system

Gillingham, M.; Montero, B. K.; Wilhelm, K.; Grudzus, K.; Sommer, S.; Santos, P.

10.1101/638288 — molecular biology — Posted on 2019-05-16

1810 In silico characterization of a “universal” Treg signature reveals the proenkephalin gene as a novel Treg marker

Marodon, G.

10.1101/638072 — immunology — Posted on 2019-05-16

1811 Analysis of Finnish blue mussel (Mytilus edulis L.) shell: Biomineral ultrastructure, organic-rich interfacial matrix and mechanical behavior

Mohammadi, P.; Wagermaier, W.; Paananen, A.; Penttila, M.; Linder, M. B.

10.1101/636696 — developmental biology — Posted on 2019-05-16

1812 Systemic sclerosis is a disease of a prematurely senescent, inflammatory and activated immunome

Paleja, B.; Low Hsiu Ling, A.; Kumar, P.; Saidin, S.; Lajam, A.; Nur Hazirah, S.; Chua, C.; Lai, L.; Albani, S.

10.1101/637736 — immunology — Posted on 2019-05-16

1813 Prefrontal attentional saccades explore space at an alpha rhythm

Gaillard, C.; Ben Hadj Hassen, S.; Di Bello, F.; Bihan-Poudec, Y.; VanRullen, R.; Ben Hamed, S.

10.1101/637975 — neuroscience — Posted on 2019-05-16

1814 Nutritional Immunity and Antibiotic Drug Treatments Influence Microbial Composition but Fail to Eliminate Urethral Catheter Biofilms in Recurrently Catheterized Patients

Yu, Y.; Singh, H.; Tsitrin, T.; Kwon, K.; Bekele, S.; Eguez, R. V.; Lin, Y.-H.; Sikorski, P.; Moncera, K. J.; Torralba, M.; Morrow, L.; Wolcott, R. D.; Nelson, K. E.; Pieper, R.

10.1101/637819 — microbiology — Posted on 2019-05-16

1815 Clinical Efficacy and Adverse Effects of Antibiotics Used to Treat Mycobacterium abscessus Pulmonary Disease

Chen, J.; Zhao, L.; Mao, Y.; Ye, M.; Guo, Q.; Zhang, Y.; Xu, L.; Zhang, Z.; Li, B.; Chu, H.

10.1101/637793 — microbiology — Posted on 2019-05-16

1816 Kin selection and sexual conflict: male relatedness and familiarity do not affect female fitness in seed beetles

Berg, E. C.; Lind, M. I.; Monahan, S.; Bricout, S.; Maklakov, A. A.

10.1101/637926 — evolutionary biology — Posted on 2019-05-16

1817 Diversification in evolutionary arenas -- assessment and synthesis

Nürk, N. M.; Linder, H. P.; Onstein, R. E.; Larcombe, M.; Hughes, C. E.; Pineiro Fernandez, L.; Schlüter, P. M.; Valente, L. M.; Beierkuhnlein, C.; Cutts, V.; Donoghue, M. J.; Edwards, E. J.; Field, R.; Flantua, S. G. A.; Higgins, S. I.; Jentsch, A.; Liede-Schumann, S.; Pirie, M. D.

10.1101/636803 — evolutionary biology — Posted on 2019-05-16

1818 A web-server framework to explore and visualize large genomic variation data in lab and its applications to wheat and its progenitors

Wang, W.; Wang, Z.; Li, X.; Ni, Z.; Hu, Z.; Xin, M.; Peng, H.; Yao, Y.; Sun, Q.; Guo, W.

10.1101/626705 — bioinformatics — Posted on 2019-05-16

1819 A microparticulate based formulation to protect therapeutic enzymes from proteolytic digestion: phenylalanine ammonia lyase as case study

Pereira de Sousa, I.; Gourmel, C.; Berkovska, O.; Burger, M.; Leroux, J.-C.

10.1101/638130 — bioengineering — Posted on 2019-05-16

1820 Quantitative and rapid Plasmodium falciparum malaria diagnosis and artemisinin-resistance detection using a CMOS Lab-on-Chip platform

Malpartida-Cardenas, K.; Miscourides, N.; Rodriguez-Manzano, J.; Yu, L.-S.; Baum, J.; Georgiou, P.

10.1101/638221 — bioengineering — Posted on 2019-05-16

1821 Kaposi sarcoma-associated herpesvirus infection in HIV patients: potential role of HIV-associated extracellular vesicles

Jin, G.; Chen, L.; Feng, Z.; Yuan, G.; Reinthal, B.; Ye, F.

10.1101/640532 — microbiology — Posted on 2019-05-16

1822 Transgenerational inheritance of betaine-induced epigenetic alterations in estrogen-responsive IGF-2/IGFBP2 genes in rat hippocampus

Yang, Y.; Yang, S.; Jiang, W.; Qi, F.; Zhao, R.

10.1101/640524 — genetics — Posted on 2019-05-16

1823 PITX1 protein interacts with ZCCHC10 to regulate hTERT mRNA transcription

Ohira, T.; Kojima, H.; Kuroda, Y.; Inaoka, D.; Osaki, M.; Wanibuchi, H.; Okada, F.; Oshimura, M.; Kugoh, H.

10.1101/640508 — cancer biology — Posted on 2019-05-16

1824 DDAP: docking domain affinity and biosynthetic pathway prediction tool for type I polyketide synthases

Li, T.; Tripathi, A.; Yu, F.; Sherman, D. H.; Rao, A.

10.1101/637405 — bioinformatics — Posted on 2019-05-16

1825 Temporal Gut Microbial Changes Predict Recurrent Clostridium difficile in Patients with and without Ulcerative Colitis

Lee, A. A.; Rao, K.; Limsrivilai, J.; Gillilland, M.; Malamet, B.; Briggs, E.; Young, V. B.; Higgins, P. D.

10.1101/632778 — microbiology — Posted on 2019-05-16

1826 Causal network perturbations for instance-specific analysis of single cell and disease samples

Buschur, K. L.; Chikina, M.; Benos, P. V.

10.1101/637710 — bioinformatics — Posted on 2019-05-16

1827 Chromatin accessibility established by Pou5f3, Sox19b and Nanog primes genes for activity during zebrafish genome activation

Palfy, M.; Schulze, G.; Valen, E.; Vastenhouw, N. L.

10.1101/639302 — developmental biology — Posted on 2019-05-16

1828 Real-time optoacoustic tracking of single moving micro-objects in deep tissue-mimicking phantoms

Aziz, A.; Medina-Sanchez, M.; Claussen, J.; Schmidt, O. G.

10.1101/640045 — biophysics — Posted on 2019-05-16

1829 Activation loop dynamics are controlled by conformation-selective inhibitors of ERK2

Pegram, L. M.; Liddle, J. C.; Xiao, Y.; Hoh, M.; Rudolph, J.; Iverson, D. B.; Vigers, G. P.; Smith, D.; Zhang, H.; Wang, W.; Moffat, J. G.; Ahn, N. G.

10.1101/639567 — biochemistry — Posted on 2019-05-16

1830 CELF1 is an EIF4E binding protein that promotes translation of epithelial-mesenchymal transition effector mRNAs

Chaudhury, A.; Pal, R.; Kongchan, N.; Zhao, N.; Zhu, Y.; Olokpa, E.; Cheema, S.; del Rincon, S.; Reineke, L. C.; Mao, S.; Llyod, R. E.; Sardiello, M.; Rosen, J. M.; Neilson, J. R.

10.1101/640300 — cancer biology — Posted on 2019-05-16

1831 Abnormal morphology biases haematocrit distribution in tumour vasculature and contributes to heterogeneity in tissue oxygenation

Bernabeu, M. O.; Kory, J.; Grogan, J. A.; Markelc, B.; Beardo Ricol, A.; d'Avezac, M.; Kaeppler, J.; Daly, N.; Hetherington, J.; Krueger, T.; Maini, P. K.; Pitt-Francis, J. M.; Muschel, R. J.; Alarcon, T.; Byrne, H. M.

10.1101/640060 — cancer biology — Posted on 2019-05-16

1832 Lithium-ATP: structure characterization and lithium binding

Haimovich, A.; Goldbourt, A.

10.1101/637900 — biochemistry — Posted on 2019-05-16

1833 Genome Sequencing Unveils a New Regulatory Landscape of Platelet Reactivity

Keramati, A. R.; Chen, M.-H.; Rodriguez, B. A. T.; Yanek, L. R.; Gaynor, B. J.; Ryan, K.; Brody, J.; NHLBI Trans-Omics for Precision Consortium, ; NHLBI TOPMed Hematology & Hemostasis Working Group, ; Kammers, K.; Kanchan, K.; Iyer, K.; Kowalski, M. H.; Pitsillides, A. N.; Cupples, L. A.; Shuldiner, A. R.; O'Connell, J. R.; Mitchell, B. D.; Faraday, N.; Taub, M. A.; Becker, L. C.; Lewis, J. P.; Mathias, R. A.; Johnson, A. D.

10.1101/621565 — genomics — Posted on 2019-05-16

1834 Bridging the gap between theory and data: the Red Queen Hypothesis for sex

Park, S. W.; Bolker, B. M.

10.1101/637413 — ecology — Posted on 2019-05-16

1835 A Hox code defines spinocerebellar neuron subtype regionalisation

Coughlan, E.; Garside, V.; Wong, S. F. L.; Liang, H.; Kraus, D.; Karmakar, K.; Maheshwari, U.; Rijli, F.; Bourne, J.; McGlinn, E.

10.1101/640243 — developmental biology — Posted on 2019-05-16

1836 Lysosomal enzyme tripeptidyl peptidase 1 plays a role in degradation of beta amyloid fibrils

Cruz, D. L.; El-Banna, M.; Majumdar, A.; Sleat, D. E.; Muldowney, M.; Lobel, P.; Maxfield, F. R.

10.1101/639682 — cell biology — Posted on 2019-05-16

1837 Binding partner regulation of Myosin VI: Loss of tumour-suppressor Dab2 leads to enhanced activity of nuclear myosin

Fili, N.; Hari-Gupta, Y.; Aston, B.; dos Santos, A.; Gough, R.; Alamad, B.; Wang, L.; Martin-Fernandez, M. L.; Toseland, C. P.

10.1101/639963 — cell biology — Posted on 2019-05-16

1838 Two dynamical behaviours of the microtubules at cell cortex reveal pulling and pushing forces that position the spindle in C. elegans embryo.

Bouvrais, H.; Chesneau, L.; Fairbrass, D.; Le Cunff, Y.; Soler, N.; Pecot, T.; Kervrann, C.; Pecreaux, J.

10.1101/638593 — biophysics — Posted on 2019-05-16

1839 Ablation of tanycytes of the arcuate nucleus and median eminence increases visceral adiposity and decreases insulin sensitivity in male mice.

Yoo, S.; Cha, D.; Kim, S.; Jiang, L.; Adebesin, M.; Wolfe, A.; Riddle, R.; Aja, S.; Blackshaw, S.

10.1101/637587 — physiology — Posted on 2019-05-16

1840 Spatial structures of fungal DNA assemblages revealed with eDNA metabarcoding in a forest river network in western Japan

Matsuoka, S.; Sugiyama, Y.; Sato, H.; Katano, I.; Harada, K.; Doi, H.

10.1101/637686 — ecology — Posted on 2019-05-16

1841 Structural basis for tetherin antagonism as a barrier to zoonotic lentiviral transmission

Buffalo, C. Z.; Sturzel, C.; Heusinger, E.; Kmiec, D.; Kirchhoff, F.; Hurley, J.; Ren, X.

10.1101/638890 — biochemistry — Posted on 2019-05-16

1842 Role of Water Mediated Interactions in Calcium-Coupled Allostery of Calmodulin Domains

Tan, C.; Li, W.; Wang, W.; Thirumalai, D.

10.1101/639468 — biochemistry — Posted on 2019-05-16

1843 Clinical manifestations and phenotypic analysis of new ANK1 gene mutations in 12 Chinese children with hereditary spherocytosis

Xie, F.; Lei, L.; Cai, B.; Gan, L.; Gao, Y.; Liu, X.; Zhou, L.; Jiang, J.

10.1101/637553 — genetics — Posted on 2019-05-15

1844 Mammalian retromer is an adaptable scaffold for cargo sorting from endosomes

Kendall, A. K.; Xie, B.; Xu, P.; Wang, J.; Burcham, R.; Frazier, M. N.; Binshtein, E.; Wei, H.; Graham, T. R.; Nakagawa, T.; Jackson, L. P.

10.1101/639575 — cell biology — Posted on 2019-05-15

1845 Myeloid Lineage Enhancers Drive Oncogene Synergy in CEBPA/CSF3R Mutant Acute Myeloid Leukemia

Braun, T. P.; Okhovat, M.; Coblentz, C.; Carratt, S. A.; Foley, A.; Schonrock, Z.; Nevonen, K.; Davis, B.; Garcia, B.; LaTocha, D.; Weeder, B. R.; Grzadkowski, M. R.; Estabrook, J. C.; Manning, H. G.; Watanabe-Smith, K.; Smith, J. L.; Leonti, A. R.; Ries, R. E.; Jeng, S.; McWeeney, S.; Di Genua, C.; Drissen, R.; Nerlov, C.; Meshinchi, S.; Carbone, L.; Druker, B. J.; Maxson, J. E.

10.1101/639617 — cancer biology — Posted on 2019-05-15

1846 Fast, Accurate Polarization and Polarity Imaging withPolarized Structured Illumination

Zhanghao, K.; Liu, W.; Li, M.; Chen, X.; Shan, C.; Wang, H.; Xi, P.; Dai, Q.

10.1101/640268 — biophysics — Posted on 2019-05-15

1847 SpCas9 activity prediction by DeepSpCas9, a deep learning-based model with unparalleled generalization performance

Kim, H. K.; Kim, Y.; Lee, S.; Min, S.; Bae, J. Y.; Choi, J. W.; Park, J.; Jung, D.; Yoon, S.; Kim, H.

10.1101/636472 — genetics — Posted on 2019-05-15

1848 Integrins control tissue morphogenesis and homeostasis by sustaining the different types of intracellular actin networks

Martin-Bermudo, M. D.; Santa-Cruz Mateos, C.; Valencia-Exposito, A.; Miguez, D. G.; Palacios, I. I.

10.1101/639427 — cell biology — Posted on 2019-05-15

1849 The rodent hippocampus as a bilateral structure: A review of hemispheric lateralization

Jordan, J. T.

10.1101/150193 — neuroscience — Posted on 2019-05-15

1850 Improving drug discovery using image-based multiparametric analysis of epigenetic landscape.

Farhy, C.; Hariharan, S.; Ylanko, J.; Orozco, L.; Zeng, F.-Y.; Pass, I.; Ugarte, F.; Forsberg, C.; Huang, C.-T.; Andrews, D.; Terskikh, A.

10.1101/541151 — cell biology — Posted on 2019-05-15

1851 The Energetics of Molecular Adaptation in Transcriptional Regulation

Chure, G.; Razo-Mejia, M.; Belliveau, N. M.; Einav, T.; Kaczmarek, Z. A.; Barnes, S. L.; Lewis, M.; Phillips, R.

10.1101/638270 — biophysics — Posted on 2019-05-15

1852 A role for the VPS retromer in Brucella intracellular replication revealed by genome-wide siRNA screening

Casanova, A.; Low, S. H.; Quebatte, M.; Sedzicki, J.; Tschon, T.; Ketterer, M.; Smith, K.; Emmenlauer, M.; Ben-Tekaya, H.; Dehio, C.

10.1101/436246 — microbiology — Posted on 2019-05-15

1853 Actin chromobody imaging reveals sub-organellar actin dynamics

Schiavon, C. R.; Zhang, T.; Zhao, B.; Andrade, L. R.; Wu, M.; Sung, T.-C.; Dayn, Y.; Feng, J. W.; Quintero, O. A.; Grosse, R.; Manor, U.

10.1101/639278 — cell biology — Posted on 2019-05-15

1854 Updated Database and Evolutionary Dynamics of U12-Type Introns

Moyer, D.; Larue, G. E.; Hershberger, C. E.; Roy, S. W.; Padgett, R. A.

10.1101/620658 — genomics — Posted on 2019-05-15

1855 An Open-Hardware sample mounting solution for inverted light-sheet microscopes with large detection objective lenses

Russell, C.; Rees, E. J.

10.1101/636977 — cell biology — Posted on 2019-05-15

1856 Generalized locomotion of brittle stars with an arbitrary number of arms

Wakita, D.; Kagaya, K.; Aonuma, H.

10.1101/616383 — animal behavior and cognition — Posted on 2019-05-15

1857 Programmed Switch in The Mitochondrial Degradation Pathways During Human Retinal Ganglion Cell Differentiation from Stem Cells is Critical for RGC Survival

Das, A.; Bell, C. M.; Berlinicke, C. A.; Marsh-Armstrong, N.; Zack, D. J.

10.1101/638585 — neuroscience — Posted on 2019-05-15

1858 Circadian light-mediated endothelial metabolic reprogramming

Oyama, Y.; Bartman, C. M.; Bonnie, S.; Lee, J. S.; Walker, L. A.; Han, J.; Borchers, C. H.; Buttrick, P. M.; Aherne, C.; Clendenen, N.; Colgan, S. P.; Eckle, T.

10.1101/561340 — cell biology — Posted on 2019-05-15

1859 Classifying drugs by their arrhythmogenic risk using machine learning

Sahli Costabal, F.; Seo, K.; Ashley, E.; Kuhl, E.

10.1101/545863 — biophysics — Posted on 2019-05-15

1860 The meaning of the Michaelis-Menten constant: Km describes a steady-state.

Canela, E. I.; Navarro, G.; Beltran, J. L.; Franco, R.

10.1101/608232 — biochemistry — Posted on 2019-05-15

1861 TNF-α differentially regulates cell cycle genes in promyelocytic and granulocytic HL-60/S4 cells

Jacobson, E. C.; Jain, L.; Vickers, M. H.; Olins, A. L.; Olins, D. E.; Perry, J. K.; O'Sullivan, J.

10.1101/471789 — genomics — Posted on 2019-05-15

1862 When does gene flow facilitate evolutionary rescue?

Tomasini, M.; Peischl, S.

10.1101/622142 — evolutionary biology — Posted on 2019-05-15

1863 Distribution and density of oxpeckers on giraffes in Hwange National Park, Zimbabwe

Gagnon, R.; Mabika, C. T.; Bonenfant, C.

10.1101/621151 — ecology — Posted on 2019-05-15

1864 A new actin depolymerase: a catch bond Myosin 1 motor

Pernier, J.; Kusters, R.; Bousquet, H.; Lagny, T.; Morchain, A.; Joanny, J.-F.; Bassereau, P.; Coudrier, E.

10.1101/375923 — biophysics — Posted on 2019-05-15

1865 NeuRiPP: Neural network identification of RiPP precursor peptides

de los Santos, E. L.

10.1101/616060 — bioinformatics — Posted on 2019-05-15

1866 High-content assay for precision medicine discovery in cystic fibrosis.

Prins, S.; Langron, E.; Hastings, C.; Hill, E.; Stefan, A. C.; Griffin, L. D.; Vergani, P.

10.1101/631614 — pharmacology and toxicology — Posted on 2019-05-15

1867 Split-Belt walking induces changes in active, but not passive, perception of step length

Sombric, C. J.; Gonzalez Rubio, M.; Torres-Oviedo, G.

10.1101/616631 — neuroscience — Posted on 2019-05-15

1868 Retromer repletion with AAV9-VPS35 restores endosomal function in the mouse hippocampus

Qureshi, Y.; Berman, D. E.; Klein, R. L.; Patel, V. M.; Simoes, S.; Kannan, S.; Cox, R.; Waksal, S. D.; Stevens, B.; Petsko, G. A.; Small, S. A.

10.1101/618496 — neuroscience — Posted on 2019-05-15

1869 Nucleosome positioning stability is a significant modulator of germline mutation rate variation across the human genome

Li, C.; Luscombe, N. M.

10.1101/494914 — genomics — Posted on 2019-05-15

1870 SF3B1 cancer-related mutations cause vulnerability to further perturbations in the U2 snRNP complex in C. elegans

Serrat, X.; Kukhtar, D.; Cornes, E.; Esteve-Codina, A.; Benlloch, H.; Cecere, G.; Ceron, J.

10.1101/634634 — cancer biology — Posted on 2019-05-15

1871 3D Multicolor Nanoscopy at 10,000 Cells a Day

Barentine, A. E. S.; Lin, Y.; Liu, M.; Kidd, P.; Balduf, L.; Grace, M. R.; Wang, S.; Bewersdorf, J.; Baddeley, D.

10.1101/606954 — biophysics — Posted on 2019-05-15

1872 Genetic diversity of CHC22 clathrin impacts its function in glucose metabolism

Fumagalli, M.; Camus, S. M.; Diekmann, Y.; Burke, A.; Camus, M. D.; Norman, P. J.; Joseph, A.-P.; Abi-Rached, L.; Benazzo, A.; Rasteiro, R.; Mathieson, I.; Topf, M.; Parham, P.; Thomas, M. G.; Brodsky, F. M.

10.1101/307264 — genetics — Posted on 2019-05-15

1873 Survey of intertidal ecosystem reveals a legacy of potentially toxic elements from industrial activity in the Skeena Estuary, British Columbia, Canada

Sizmur, T.; Campbell, L.; Dracott, K.; Jones, M.; O'Driscoll, N. J.; Gerwing, T.

10.1101/623587 — ecology — Posted on 2019-05-15

1874 A heme-binding protein produced by Haemophilus haemolyticus inhibits non-typeable Haemophilus influenzae

Latham, R. D.; Torrado, M.; Atto, B.; Walshe, J. L.; Wilson, R.; Guss, J. M.; Mackay, J. P.; Tristram, S.; Gell, D. A.

10.1101/626416 — biochemistry — Posted on 2019-05-15

1875 A pretectal command system controls hunting behaviour

Antinucci, P.; Folgueira, M.; Bianco, I. H.

10.1101/637215 — neuroscience — Posted on 2019-05-15

1876 Simultaneous regulation of cytokinetic furrow and nucleus positions by cortical tension contributes to proper DNA segregation during late mitosis

Pacquelet, A.; Jousseaume, M.; Etienne, J.; Michaux, G.

10.1101/626903 — cell biology — Posted on 2019-05-15

1877 ADAPTS: Automated Deconvolution Augmentation of Profiles for Tissue Specific cells

Danziger, S. A.; Gibbs, D. L.; Shmulevich, I.; McConnell, M.; Trotter, M. W.; Schmitz, F.; Reiss, D. J.; Ratushny, A. V.

10.1101/633958 — biophysics — Posted on 2019-05-15

1878 Benchmarking of alignment-free sequence comparison methods

Zielezinski, A.; Girgis, H. Z.; Bernard, G.; Leimeister, C.-A.; Tang, K.; Dencker, T.; Lau, A. K.; Roehling, S.; Choi, J.; Waterman, M. S.; Comin, M.; Kim, S.-H.; Vinga, S.; Almeida, J. S.; Chan, C. X.; James, B.; Sun, F.; Morgenstern, B.; Karlowski, W. M.

10.1101/611137 — bioinformatics — Posted on 2019-05-15

1879 Transcriptomic response to divergent selection for flowering time in maize reveals convergence and key players of the underlying gene regulatory network

Tenaillon, M. I.; Seddiki, K.; Mollion, M.; Le Guilloux, M.; Marchadier, E.; Ressayre, A.; Dillmann, C.

10.1101/461947 — plant biology — Posted on 2019-05-15

1880 A high-fat diet induces a microbiota-dependent increase in stem cell activity in the Drosophila intestine

von Frieling, J.; Faisal, M. N.; Sporn, F.; Pfefferkorn, R.; Nolte, S. S.; Sommer, F.; Rosenstiel, P.; Roeder, T.

10.1101/604744 — physiology — Posted on 2019-05-15

1881 Integrated Metabolomic and Transcriptomic Profiling Reveals Novel Activation-Induced Metabolic Networks in Human T cells

Hiemer, S. E.; Jatav, S.; Jussif, J.; Alley, J.; Lathwal, S.; Piotrowski, M. A.; Janiszewski, J.; Kibbey, R.; Alves, T.; Dumlao, D.; Jha, A. K.; Bandukwala, H.

10.1101/635789 — immunology — Posted on 2019-05-15

1882 Rigorous equations for isothermal titration calorimetry: theoretical and practical consequences

Dumas, P.

10.1101/512780 — biophysics — Posted on 2019-05-15

1883 Macro-to-nano scale investigation of wall-plate joints in the acorn barnacle Semibalanus balanoides: correlative imaging, biological form and function, and bioinspiration

Mitchell, R. L.; Coleman, M.; Davies, P.; North, L.; Pope, E.; Pleydell-Pearce, C.; Harris, W.; Johnston, R.

10.1101/590158 — systems biology — Posted on 2019-05-15

1884 Differential coupling of adult-born granule cells to parvalbumin and somatostatin interneurons

Groisman, A.; Yang, S.-m.; Schinder, A.

10.1101/598615 — neuroscience — Posted on 2019-05-15

1885 Mendelian Randomization analysis reveals a causal influence of circulating sclerostin levels on bone mineral density and fractures

Zheng, J.; Maerz, W.; Gergei, I.; Kleber, M.; Drechsler, C.; Wanner, C.; Brandenburg, V.; Reppe, S.; Gautvik, K.; Medina-Gomez, C.; Shevroja, E.; Gilly, A.; Park, Y.-C.; Dedoussis, G.; Zeggini, E.; Lorentzon, M.; Henning, P.; Lerne, U.; Nilsson, K.; Moverare-Skrtic, S.; Baird, D.; Falk, L.; Groom, A.; Capellini, T.; Grundberg, E.; Nethander, M.; Ohlsson, C.; Davey Smith, G.; Tobias, J.

10.1101/455386 — genetics — Posted on 2019-05-15

1886 CRISPR-based DNA and RNA detection with liquid-liquid phase separation

Spoelstra, W. K.; Jacques, J. M.; Nobrega, F. L.; Haagsma, A. C.; Dogterom, M.; Idema, T.; Brouns, S. J. J.; Reese, L.

10.1101/471482 — biophysics — Posted on 2019-05-15

1887 Improvement of the memory function of a mutual repression network in a stochastic environment by negative autoregulation

Hasan, A. B. M. S. U.; Kurata, H.; Pechmann, S.

10.1101/279109 — systems biology — Posted on 2019-05-15

1888 Cerebral oxygenation during locomotion is modulated by respiration

Zhang, Q.; Roche, M.; Gheres, K.; Chaigneau, E.; Haselden, W. D.; Charpak, S.; Drew, P. J.

10.1101/639419 — neuroscience — Posted on 2019-05-15

1889 Somatosensory-Motor Dysconnectivity Spans Multiple Transdiagnostic Dimensions of Psychopathology

Kebets, V.; Holmes, A. J.; Orban, C.; Tang, S.; Li, J.; Sun, N.; Kong, R.; Poldrack, R. A.; Yeo, B. T. T.

10.1101/637827 — neuroscience — Posted on 2019-05-15

1890 Mental Chronometry in the Pocket? Timing Accuracy of Web Applications on Touchscreen and Keyboard Devices

Pronk, T.; Wiers, R. W.; Molenkamp, B.; Murre, J.

10.1101/639351 — neuroscience — Posted on 2019-05-15

1891 Functional connectivity alterations of the temporal lobe and hippocampus in semantic dementia and Alzheimer’s disease

Schwab, S.; Afyouni, S.; Chen, Y.; Han, Z.; Guo, Q.; Dierks, T.; Wahlund, L.-O.; Grieder, M.

10.1101/322131 — neuroscience — Posted on 2019-05-15

1892 Stochastic exits from dormancy give rise to heavy-tailed distributions of descendants in bacterial populations

Wright, E. S.; Vetsigian, K.

10.1101/246629 — microbiology — Posted on 2019-05-15

1893 Spatial and semantic regularities produce interactive effects in early stages of visual orientation

Notaro, G.; Hasson, U.

10.1101/639385 — neuroscience — Posted on 2019-05-15

1894 Seeking the beauty center in the brain: A meta-analysis of fMRI studies of beautiful human faces and visual art

Hu, C.-P.; Huang, Y.; Eickhoff, S. B.; Peng, K.; Sui, J.

10.1101/081539 — neuroscience — Posted on 2019-05-15

1895 Polygenic Score of Intelligence is More Predictive of Crystallized than Fluid Performance Among Children

Loughnan, R.; Palmer, C. E.; Thompson, W. K.; Dale, A. M.; Jernigan, T. L.; Fan, C. C.

10.1101/637512 — neuroscience — Posted on 2019-05-15

1896 Subjectively perceived control drives affective, neural, and motivational markers of self-related outcome valuation

Stolz, D. S.; Müller-Pinzler, L.; Krach, S.; Paulus, F. M.

10.1101/637207 — neuroscience — Posted on 2019-05-15

1897 Cofactor selectivity in methylmalonyl-CoA mutase, a model cobamide-dependent enzyme

Sokolovskaya, O. M.; Mok, K. C.; Park, J. D.; Tran, J. L. A.; Quanstrom, K. A.; Taga, M. E.

10.1101/637140 — microbiology — Posted on 2019-05-15

1898 Constructing a Timescale of Biotic Recovery across the Cretaceous Paleogene Boundary, Corral Bluffs, Denver Basin, Colorado

Fuentes, A. J.; Clyde, W. C.; Weissenburger, K.; Bercovici, A.; Lyson, T. R.; Miller, I. M.; Ramenzani, J.; Schmitz, M. D.; Johnson, K. R.

10.1101/636951 — paleontology — Posted on 2019-05-15

1899 Choosing and learning: outcome valence differentially affects learning from free versus forced choices

Chambon, V.; Thero, H.; Vidal, M.; Vandendriessche, H.; Haggard, P.; Palminteri, S.

10.1101/637157 — neuroscience — Posted on 2019-05-15

1900 Community-level signatures of ecological succession in natural bacterial communities

Pascual-Garcia, A.; Bell, T.

10.1101/636233 — microbiology — Posted on 2019-05-15

1901 A comparative epigenome analysis of gammaherpesviruses suggests cis-acting sequence features as critical mediators of rapid polycomb recruitment

Günther, T.; Fröhlich, J.; Burkhardt, L.; Herrde, C.; Ohno, S.; Adler, H.; Grundhoff, A.

10.1101/639898 — microbiology — Posted on 2019-05-15

1902 Deconvolution of Nucleic-acid Length Distributions: A Gel Electrophoresis Analysis Tool and Applications

Ziraldo, R.; Shoura, M. J.; Fire, A.; Levene, S. D.

10.1101/636936 — genomics — Posted on 2019-05-15

1903 A sparse negative binomial classifier with covariateadjustment for RNA-seq data

Rahman, M. T.; Huang, H.-E.; Tai, A.-S.; Hsieh, W.-P.; Tseng, G.

10.1101/636340 — genomics — Posted on 2019-05-15

1904 Why Do Long Zinc Finger Proteins have Short Motifs? A case study of ZFY and CTCF reveals non-independent recognition of tandem zinc finger proteins.

Zuo, Z.; Billings, T.; Walker, M.; Petkov, P.; Fordyce, P.; Stormo, G.

10.1101/637298 — genetics — Posted on 2019-05-15

1905 Evaluation of radioprotective effect of chickpea (Cicer arietinum) in the survival of Lasioderma serricorne (Fabricius, 1972) (Coleoptera, Anobiidae) irradiated with 60Co

Barros, A. C.; Arthur, V.; Okazaki, K.

10.1101/637322 — biophysics — Posted on 2019-05-15

1906 RNA strand invasion activity of the Polycomb complex PRC2

Alecki, C.; Chiwara, V.; Sanz, L. A.; Grau, D.; Arias Perez, O.; Armache, K.-J.; Chedin, F.; Francis, N. J.

10.1101/635722 — biochemistry — Posted on 2019-05-15

1907 Loss of F-box Motif Encoding Gene SAF1 and RRM3 Together Leads to Synthetic Growth Defect and Sensitivity to HU, MMS in S.cerevisiae

Sharma, M.; Verma, V.; Bairwa, N. K.

10.1101/636902 — genetics — Posted on 2019-05-15

1908 Chikungunya Outbreak in Bangladesh (2017): Clinical and hematological findings

Anwar, S.; Taslem Mourosi, J.; Khan, M. F.; Ullah, M. O.; Vanakker, O. M.; Hosen, M. J.

10.1101/639872 — epidemiology — Posted on 2019-05-15

1909 A preliminary investigation on the dependence of arthropod diversity on vegetation diversity across four contrasting ecosystems in Hanthana mountain range of Sri Lanka

Weerathunga, W. A. M. T.; Athapaththu, A. M. G. K.; Amarasinghe, D.

10.1101/637280 — ecology — Posted on 2019-05-15

1910 De-risking drug discovery of intracellular targeting peptides: screening strategies to eliminate false-positive hits

10.1101/636563 — biochemistry — Posted on 2019-05-15

1911 Dynamic reconfiguration of functional subgraphs after musical training in young adults

Li, Q.; Wang, X.; Wang, S.; Xie, Y.; Xie, Y.; Li, S.

10.1101/639856 — neuroscience — Posted on 2019-05-15

1912 An intergenic non-coding RNA promoter required for histone modifications in the human β-globin chromatin domain

Debrand, E.; Chakalova, L.; Miles, J.; Dai, Y.-F.; Goyenechea, B.; Dye, S.; Osborne, C.; Harju-Baker, S.; Pink, R.; Caley, D.; Carter, D.; Peterson, K. R.; Fraser, P.

10.1101/639807 — genetics — Posted on 2019-05-15

1913 Bayesian network analysis complements Mendelian randomization approaches for exploratory analysis of causal relationships in complex data

Howey, R.; Shin, S.-Y.; Relton, C.; Davey Smith, G.; Cordell, H. J.

10.1101/639864 — genetics — Posted on 2019-05-15

1914 New Genotype Emergence of DENV are Constrained by the Double Host Selection, Reducing the Probability of Alternative Serotype Emergence

Sanchez-Gonzalez, G.; Conde, R.

10.1101/639849 — evolutionary biology — Posted on 2019-05-15

1915 Neural tube development depends on notochord-derived Sonic hedgehog released into the sclerotome

Kahane, N.; Kalcheim, C.

10.1101/639831 — developmental biology — Posted on 2019-05-15

1916 Comparison of EEG source reconstructed functional networks in healthy subjects elicited during visual oddball task

Thee, K. W.; Nisar, H.; Yeap, K. H.; Tan, W. M.

10.1101/639815 — neuroscience — Posted on 2019-05-15

1917 A spatial analysis of childhood cancer and industrial air pollution in a metropolitan area of Colombia

Valbuena-Garcia, A. M.; Rodriguez-Villamizar, L. A.; Uribe Perez, C. J.; Moreno Corzo, F. E.; Ortiz Martinez, R. G.

10.1101/639773 — epidemiology — Posted on 2019-05-15

1918 Bund removal to re-establish tidal flow, remove aquatic weeds and restore coastal wetland services - North Queensland, Australia

Abbott, B. N.; Wallace, J.; Nicholas, D. M.; Karim, F.; Waltham, N.

10.1101/639799 — ecology — Posted on 2019-05-15

1919 The effect of light vs dark coat color on thermal status in Labrador Retriever dogs.

Neander, C.; Baker, J.; Kelsey, K.; Feugang, J. M.; Perry, E.

10.1101/639757 — systems biology — Posted on 2019-05-15

1920 Nociception testing duringfixed-wing ambulance flights.An interventional pilot study on the effects of flight-related environmental changes on the nociception of healthy volunteers.

Prottengeier, J.; Elsner, S.; Wehrfritz, A.; Moritz, A.; Schmidt, J.; Meyer, M.

10.1101/639781 — physiology — Posted on 2019-05-15

1921 ChIP-seq of plasma cell-free nucleosomes identifies cell-of-origin gene expression programs

Sadeh, R.; Fialkoff, G.; Sharkia, I.; Rahat, A.; Nitzan, M.; Fox-Fisher, I.; Neiman, D.; Meler, G.; Kamari, Z.; Yaish, D.; Abu-Gazala, S.; Kaplan, T.; Shemer, R.; Planer, D.; Zik, A.; Galun, E.; Glaser, B.; Dor, Y.; Friedman, N.

10.1101/638643 — molecular biology — Posted on 2019-05-15

1922 Dose-dependent functions of SWI/SNF BAF in permitting and inhibiting cell proliferation in vivo

van der Vaart, A.; Godfrey, M.; Portegijs, V.; van den Heuvel, S.

10.1101/636720 — developmental biology — Posted on 2019-05-15

1923 Prediction of risk scores for colorectal cancer patients from the concentration of proteins involved in mitochondrial apoptotic pathway

Lathwal, A.; Arora, C.; Raghava, G. P. S.

10.1101/639740 — bioinformatics — Posted on 2019-05-15

1924 Group B rotavirus encodes a functional fusion-associated small transmembrane (FAST) protein

Diller, J. R.; Parrington, H. M.; Patton, J. T.; Ogden, K. M.

10.1101/639070 — microbiology — Posted on 2019-05-15

1925 Modeling methylation dynamics with simultaneous changes in CpG islands

Grosser, K.; Metzler, D.

10.1101/638023 — bioinformatics — Posted on 2019-05-15

1926 metaFlye: scalable long-read metagenome assembly using repeat graphs

Kolmogorov, M.; Rayko, M.; Yuan, J.; Polevikov, E.; Pevzner, P.

10.1101/637637 — bioinformatics — Posted on 2019-05-15

1927 Advancing functional genetics through Agrobacterium-mediated insertional mutagenesis and CRISPR/Cas9 in the commensal and pathogenic yeast Malassezia furfur

Ianiri, G.; Dagotto, G.; Heitman, J.

10.1101/638429 — microbiology — Posted on 2019-05-15

1928 Interactions between the gut microbiome and mucosal immunoglobulins A, M and G in the developing infant gut

Janzon, A.; Goodrich, J. K.; Koren, O.; the TEDDY study group, ; Waters, J.; Ley, R.

10.1101/637959 — microbiology — Posted on 2019-05-15

1929 Kinetics of cytokine receptor trafficking determine signaling and functional selectivity

Martinez-Fabregas, J.; Wilmes, S.; Wang, L.; Hafer, m.; Pohler, E.; Lokau, J.; Garbers, C.; Cozzani, A.; Piehler, J.; Kazemian, M.; Mitra, S.; Moraga-Gonzalez, I.

10.1101/638031 — immunology — Posted on 2019-05-15

1930 Occurrence of marine sponge Chelonaplysilla delicata Pulitzer-Finali & Pronzato, 1999 (Porifera: Demospongiae: Darwinellidae) from the Andaman Islands and the Indian Ocean: An indication of unexplored sessile habitat on mesophotic shipwrecks

Das, R. R.; Immanuel, T.; Lakra, R. K.; Baath, K.; Thiruchitrambalam, G.

10.1101/636043 — ecology — Posted on 2019-05-15

1931 Liver-Chip: Reproducing Human and Cross-Species Toxicities

Jang, K.-J.; Otieno, M.; Ronxhi, J.; Lim, H.-K.; Ewart, L.; Kodella, K.; Petropolis, D.; Kulkarni, G.; Rubins, J.; Conegliano, D.; Nawroth, J.; Simic, D.; Lam, W.; Singer, M.; Barale, E.; Singh, B.; Sonee, M.; Streeter, A.; Manthey, C.; Jones, B.; Srivastava, A.; Andersson, L.; Williams, D.; Park, H.; Barrile, R.; Sliz, J.; Herland, A.; Haney, S.; Karalis, K.; Ingber, D.; Hamilton, G.

10.1101/631002 — pharmacology and toxicology — Posted on 2019-05-15

1932 Cryo-EM structure of the MinCD copolymeric filament from Pseudomonas aeruginosa at 3.1 A resolution

Szewczak-Harris, A.; Wagstaff, J.; Lowe, J.

10.1101/638619 — molecular biology — Posted on 2019-05-15

1933 Cryo-EM structure of the ClpXP protein degradation machinery

Gatsogiannis, C.; Balogh, D.; Merino, F.; Sieber, S.; Raunser, S.

10.1101/638692 — molecular biology — Posted on 2019-05-15

1934 Rad9/53BP1 promotes crossover recombination DNA repair by limiting the Sgs1 and Mph1 helicases

Ferrari, M.; Rawal, C.; Lodovichi, S.; Pellicioli, A.

10.1101/638791 — molecular biology — Posted on 2019-05-15

1935 Antibiotic treatment shapes antigen presentation during chronic TB infection, offering novel targets for therapeutic vaccination

Chuang, Y.-M.; Dutta, N. K.; Pinn, M. L.; Hung, C.-F.; Karakousis, P. C.

10.1101/638742 — microbiology — Posted on 2019-05-15

1936 Role of coiled-coil registry shifts in activation of human Bicaudal D2 for dynein recruitment upon cargo-binding

Noell, C. R.; Loh, J. Y.; Debler, E. W.; Loftus, K. M.; Cui, H.; Russ, B. B.; Goyal, P.; Solmaz, S. R.

10.1101/638536 — biophysics — Posted on 2019-05-15

1937 Fluorescent Sp3 Defect-Tailored Carbon Nanotubes Enable NIR-II Single Particle Imaging in Live Brain Slices at Ultra-Low Excitation Doses

Mandal, A. K.; Wu, X.; Ferreira, J. S.; Kim, M.; Powell, L. R.; Kwon, H.; Groc, L.; Wang, Y.; Cognet, L.

10.1101/636860 — biophysics — Posted on 2019-05-15

1938 Improved single-cell ATAC-seq reveals chromatin dynamics of in vitro corticogenesis

Mulqueen, R. M.; DeRosa, B. A.; Thornton, C. A.; Sayar, Z.; Torkenczy, K. A.; Fields, A. J.; Wright, K. M.; Nan, X.; Ramji, R.; Steemers, F. J.; O'Roak, B. J.; Adey, A. C.

10.1101/637256 — genomics — Posted on 2019-05-15

1939 Comparative genomic analysis of the pheromone receptor Class 1 family (V1R) reveals extreme complexity in mouse lemurs (genus, Microcebus) and chromosomal hotspots across mammals

Hunnicutt, K. E.; Tiley, G. P.; Williams, R. C.; Larsen, P. A.; Blanco, M. B.; Rasoloarison, R. M.; Campbell, C. R.; Zhu, K.; Weisrock, D. W.; Matsunami, H.; Yoder, A. D.

10.1101/637348 — genomics — Posted on 2019-05-15

1940 Degree and site of chromosomal instability define its oncogenic potential

Hoevenaar, W.; Janssen, A.; Quirindongo, A.; Ma, H.; Klaasen, S.; Teixeira, A.; Offerhaus, J.; Medema, R.; Jelluma, N.; Kops, G.

10.1101/638460 — cancer biology — Posted on 2019-05-15

1941 The effects of dyslipidaemia and cholesterol modulation on erythrocyte susceptibility to malaria parasite infection

Koch, M.; Cegla, J.; Jones, B.; Lu, Y.; Mallat, Z.; Blagborough, A.; Angrisano, F.; Baum, J.

10.1101/630251 — microbiology — Posted on 2019-05-15

1942 Identification of Pathogenic Structural Variants in Rare Disease Patients through Genome Sequencing

Holt, J. M.; Birch, C. L.; Brown, D. M.; Gajapathy, M.; Sosonkina, N.; Wilk, B.; Wilk, M.; Spillmann, R. C.; Stong, N.; Lee, H.; Huang, A. Y.; Bonner, D.; Kohler, J. N.; Macnamara, E. F.; Diseases Network, U.; Nelson, S. F.; Shashi, V.; Worthey, E. A.

10.1101/627661 — genomics — Posted on 2019-05-15

1943 Polygenic Susceptibility of Aortic Aneurysms Associates to the Diameter of the Aneurysm Sac: the Aneurysm-Express Biobank Cohort.

van Laarhoven, C. J.; van Setten, J.; van Herwaarden, J. A.; de Kleijn, D. P.; Pasterkamp, G.; de Borst, G. J.; van der Laan, S. W.

10.1101/636795 — genetics — Posted on 2019-05-15

1944 Estimating probabilistic dark diversity based on the hypergeometric distribution

Carmona, C. P.; Szava-Kovats, R.; Partel, M.

10.1101/636753 — ecology — Posted on 2019-05-15

1945 Bioresponsive Microspheres for On-demand Delivery of Anti-inflammatory Cytokines for Osteoarthritis

Park, E.; Hart, M.; Rolauffs, B.; Stegemann, J. P.; T. Annamalai, R.

10.1101/636886 — bioengineering — Posted on 2019-05-15

1946 Application of a novel force-field to manipulate the relationship between pelvis motion and step width in human walking

Heitkamp, L. N.; Stimpson, K. H.; Dean, J. C.

10.1101/636787 — bioengineering — Posted on 2019-05-15

1947 PATHWAYS ANALYZER: Design of a Tool for the Synthetic Assembly of Escherichia Coli K-12 MG1655 Bacteria for Biofuel Production

Vasquez, L.; Alvarado, R.; Orozco, A.

10.1101/634998 — synthetic biology — Posted on 2019-05-15

1948 A microwell cell capture device reveals variable response to dobutamine in isolated cardiomyocytes

Clark, J. A.; Weiss, J. D.; Campbell, S.

10.1101/636852 — physiology — Posted on 2019-05-15

1949 A pretectal command system controls hunting behaviour

Antinucci, P.; Folgueira, M.; Bianco, I. H.

10.1101/637215 — neuroscience — Posted on 2019-05-15

1950 Immune Profiling Panel: a proof of concept study of a new multiplex molecular tool to assess the immune status of critically-ill patients

Tawfik, D. M.; Vachot, L.; Bocquet, A.; Venet, F.; Rimmele, T.; Monneret, G.; Blein, S.; Montogomery, J. L.; Hemmert, A. C.; Pachot, A.; Moucadel, V.; Marcos, J. Y.; Brengel-Pesce, K.; Mallet, F.; Textoris, J.

10.1101/636522 — immunology — Posted on 2019-05-15

1951 SpCas9 activity prediction by DeepCas9, a deep learning-based model with unparalleled generalization performance

Kim, H. K.; Kim, Y.; Lee, S.; Min, S.; Bae, J. Y.; Choi, J. W.; Park, J.; Jung, D.; Yoon, S.; Kim, H.

10.1101/636472 — genetics — Posted on 2019-05-15

1952 Genomic prediction including SNP-specific variance predictors

Mouresan, E. F.; Selle, M.; Ronnegard, L.

10.1101/636746 — genetics — Posted on 2019-05-15

1953 Muscle MACF1 maintains myonuclei and mitochondria localization through microtubules to control muscle functionalities

Ghasemizadeh, A.; Christin, E.; Guiraud, A.; Couturier, N.; Risson, V.; Girard, E.; Soler, C.; Laddada, L.; Jagla, K.; Sanchez, C.; Jaque-Fernandez, F.-I.; Garcia, A.; Lanfranchi, M.; Jacquemond, V.; Gondin, J.; Courchet, J.; Schaeffer, L.; Gache, V.

10.1101/636464 — cell biology — Posted on 2019-05-15

1954 Compromised function of an ESCRT complex promotes endolysosomal escape of tau seeds and propagation of tau aggregation

Chen, J. J.; Nathaniel, D. L.; Raghavan, P.; Nelson, M.; Tian, R.; Tse, E.; Hong, J. Y.; See, S. K.; Mok, S.-A.; Southworth, D. R.; Grinberg, L. T.; Gestwicki, J. E.; Leonetti, M. D.; Kampmann, M.

10.1101/637785 — cell biology — Posted on 2019-05-15

1955 Autonomous induction of hepatic polarity to construct single cell liver

Zhang, Y.; de Mets, R.; Monzel, C.; Toh, P.; Van Hul, N.; Ng, S. S.; Rashid, T.; Viasnoff, V.

10.1101/636654 — cell biology — Posted on 2019-05-15

1956 Development of a high-throughput γ-H2AX assay based on imaging flow cytometry

Lee, Y.; Wang, Q.; Shuryak, I.; Brenner, D. J.; Turner, H. C.

10.1101/637371 — cell biology — Posted on 2019-05-15

1957 K+ in a Kv1.2 Channel Pore: Hydration, Selectivity, and the Role of a Conserved Threonine

Green, M. E.; Kariev, A. M.

10.1101/638783 — biophysics — Posted on 2019-05-15

1958 Frustration and Fidelity in Influenza Genome Assembly

Farheen, N.; Thattai, M.

10.1101/636613 — biophysics — Posted on 2019-05-15

1959 Unveiling the multi-step solubilization mechanism of single vesicles by detergents.

Dalgarno, P. A.; Juan-Colas, J.; Hedley, G. J.; Pineiro, L.; Novo, M.; Perez-Gonzalez, C.; Samuel, I. D. W.; Leake, M. C.; Johnson, S.; Al-Soufi, W.; Penedo, J. C.; Quinn, S. D.

10.1101/638189 — biophysics — Posted on 2019-05-15

1960 Branched-Chain Amino Acid Metabolic Reprogramming Orchestrates Drug Resistance to EGFR Tyrosine Kinase Inhibitors

Wang, Y.; Zhang, J.; Ren, S.; Sun, D.; Huang, H.-Y.; Wang, H.; Jin, Y.; Li, F.; Zheng, C.; Yang, L.; Deng, L.; Jiang, Z.; Jiang, T.; Han, X.; Hou, S.; Guo, C.; Li, F.; Gao, D.; Qin, J.; Gao, D.; Chen, L.; Wong, K.-K.; Li, C.; Hu, L.; Zhou, C.; Ji, H.

10.1101/638007 — cancer biology — Posted on 2019-05-15

1961 Rational design of a synthetic farnesyl-electrostatic switch based on the hypervariable region of K-Ras4b

Kim, A. K.; Inoue, T.

10.1101/635839 — cell biology — Posted on 2019-05-15

1962 Genetic screening for single-cell variability modulators driving therapy resistance

Torre, E. A.; Arai, E.; Bayatpour, S.; Beck, L. E.; Emert, B. L.; Shaffer, S. M.; Mellis, I. A.; Budinich, K. A.; Weeraratna, A.; Shi, J.; Raj, A.

10.1101/638809 — cell biology — Posted on 2019-05-15

1963 Missense mutations in the MLKL brace region lead to lethal neonatal inflammation in mice and are present in high frequency in humans.

Hildebrand, J.; Kauppi, M.; Majewski, I.; Liu, Z.; Cox, A.; Miyake, S.; Hall, C.; Petrie, E.; Silk, M.; Tanzer, M.; Young, S.; Garnish, S.; Corbin, J.; Stutz, M.; Gangatirkar, P.; Josefsson, E.; Rigbye, K.; Anderton, H.; Rickard, J.; Tripaydonis, A.; Sheridan, J.; Scerri, T.; Czabotar, P.; Zhang, J. G.; Allison, C.; Pellegrini, M.; Tannahill, G.; Hatchell, E.; Wilson, T.; Stockwell, D.; de Graaf, C.; Hilton, A.; Silke, N.; Spall, S.; Chau, D.; Athanasopoulos, V.; Laxer, R.; Bassuk, A.; Darbro, B.; Fiatarone Singh, M.; Vlahovich, N.; Hughes, D.; Kovlovskaia, M.; Ascher, D.; Warnatz, K.; Venhoff

10.1101/628370 — cell biology — Posted on 2019-05-15

1964 CD38 is a good predictor of anti-PD-1 immunotherapy responsiveness in hepatocellular carcinoma

Goh, S.; Ng, H. H. M.; Chew, V.; Sim, X. N.; Li, H.; Lim, S.; Lim, J. C. T.; Loh, J. J. H.; Sabai, K.; Ong, C. C. H.; Loh, T.; Leow, W. Q.; Lee, J. J. X.; Toh, H. C.; Malavasi, F.; Tai, D. W. M.; Lee, S. Y.; Chow, P.; Newell, E.; Choo, S. P.; Yeong, J.; Lim, T. K. H.

10.1101/638981 — cancer biology — Posted on 2019-05-15

1965 OTUB1 is a key regulator of RIG-I dependent immune signalling and is targeted for proteasomal degradation by influenza A NS1

Jahan, A. S.; Biquand, E.; Munoz-Moreno, R.; Le Quang, A.; Mok, C. K.-P.; Wong, H. H.; Teo, Q. W.; Doak, S.; Chin, A.; Poon, L. L. M.; te Velthuis, A.; Garcia-Sastre, A.; Demeret, C.; Sanyal, S.

10.1101/634014 — biochemistry — Posted on 2019-05-15

1966 Quantitative Models of Phage-Antibiotics Combination Therapy

Rodriguez-Gonzalez, R. A.; Leung, C. Y.; Chan, B. K.; Turner, P. E.; Weitz, J. S.

10.1101/633784 — microbiology — Posted on 2019-05-14

1967 CWL-Airflow: a lightweight pipeline manager supporting Common Workflow Language

Kotliar, M.; Kartashov, A.; Barski, A.

10.1101/249243 — bioinformatics — Posted on 2019-05-14

1968 A thermodynamic atlas of carbon redox chemical space

Jinich, A.; Sanchez-Lengeling, B.; Ren, H.; Goldford, J. E.; Noor, E.; Sanders, J. N.; Segre, D.; Aspuru-Guzik, A.

10.1101/245811 — systems biology — Posted on 2019-05-14

1969 Functional integration of \"undead\" neurons in the olfactory system

Prieto-Godino, L. L.; Silbering, A. F.; Khallaf, M. A.; Cruchet, S.; Bojkowska, K.; Pradervand, S.; Hansson, B. S.; Knaden, M.; Benton, R.

10.1101/623488 — neuroscience — Posted on 2019-05-14

1970 Social foraging extends associative odor-food memory expression in fruit flies (Drosophila melanogaster)

Sehdev, A.; Mohammed, Y.; Tafrali, C.; Szyszka, P.

10.1101/636399 — neuroscience — Posted on 2019-05-14

1971 Resilience Analysis for Competing Populations

Cesar Fassoni, A.; de Carvalho Braga, D.

10.1101/578609 — ecology — Posted on 2019-05-14

1972 Dynamic Laser Speckle Imaging

Postnov, D. D.; Tang, J.; Erdener, S. E.; Kılıc, K.; Boas, D. A.

10.1101/626515 — bioengineering — Posted on 2019-05-14

1973 Developmental changes in connectivity between the amygdala subnuclei and occipitotemporal cortex

Hansen, H. A.; Saygin, Z. M.

10.1101/636894 — neuroscience — Posted on 2019-05-14

1974 A nematode-specific gene underlies bleomycin-response variation in Caenorhabditis elegans

Brady, S. C.; Zdraljevic, S.; Bisaga, K.; Tanny, R.; Cook, D. E.; Lee, D.; Wang, Y.; Andersen, E. C.

10.1101/565218 — genetics — Posted on 2019-05-14

1975 Endothelial Protein C Receptor Contributes to Experimental Malaria-Associated Acute Respiratory Distress Syndrome

Ortolan, L. S.; Sercundes, M. K.; Moura, G. C.; Quirino, T. C.; Debone, D.; Costa, D. S.; Murillo, O.; Marinho, C. R. F.; Epiphanio, S.

10.1101/348318 — pathology — Posted on 2019-05-14

1976 Response outcomes gate the impact of expectations on perceptual decisions

Hermoso-Mendizabal, A.; Hyafil, A.; Rueda-Orozco, P. E.; Jaramillo, S.; Robbe, D.; de la Rocha, J.

10.1101/433409 — neuroscience — Posted on 2019-05-14

1977 Lamina-specific neuronal properties promote robust, stable signal propagation in feedforward networks

Han, D.; De Schutter, E.; Hong, S.

10.1101/596676 — neuroscience — Posted on 2019-05-14

1978 Enhanced biodegradation of naphthalene by Pseudomonas sp. consortium immobilized in calcium alginate beads

Dutta, K.; Shityakov, S.; Khalifa, I.; Ballav, S.; Jana, D.; Manna, T.; Karmakar, M.; Raul, P.; Guchhait, K. C.; Ghosh, C.

10.1101/631135 — microbiology — Posted on 2019-05-14

1979 Genome-wide assessment of Mycobacterium tuberculosis conditionally essential metabolic pathways

Minato, Y.; Gohl, D. M.; Thiede, J. M.; Chacon, J. M.; Harcombe, W. R.; Maruyama, F.; Baughn, A. D.

10.1101/534289 — microbiology — Posted on 2019-05-14

1980 Evolution of asymmetric gamete signalling and suppressed recombination at the mating type locus

Hadjivasiliou, Z.; Pomiankowski, A.

10.1101/518654 — evolutionary biology — Posted on 2019-05-14

1981 Challenges and recommendations to improve the installability and archival stability of omics computational tools

Mangul, S.; Mosqueiro, T.; Abdill, R. J.; Duong, D.; Mitchell, K.; Sarwal, V.; Hill, B.; Brito, J.; Littman, R.; Statz, B.; Lam, A.; Dayama, G.; Grieneisen, L.; Martin, L.; Flint, J.; Eskin, E.; Blekhman, R.

10.1101/452532 — bioinformatics — Posted on 2019-05-14

1982 TCR and inflammatory signals tune human MAIT cells to exert specific tissue repair and effector functions

Leng, T.; Delowar Akther, H.; Hackstein, C.-P.; King, T.; Friedrich, M.; Christoforidou, Z.; McCuaig, S.; Neyazi, M.; Arancibia-Carcamo, C. V.; Powrie, F.; Oxford IBD Investigators, ; Marchi, E.; Sanchesperes, R.; Millar, V.; Ebner, D.; Willberg, C.; Klenerman, P.

10.1101/475913 — immunology — Posted on 2019-05-14

1983 Sentinel Case of Candida auris in the Western United States Following Prolonged Occult Colonization in a Returned Traveler from India

Woodworth, M. H.; Dynerman, D.; Crawford, E. D.; Li, L. M.; Doernberg, S. B.; Ramirez-Avila, L.; Serpa, P. H.; Nichols, A.; Lyden, A.; Tato, C. M.; Miller, S.; Derisi, J. L.; Langelier, C.

10.1101/601559 — epidemiology — Posted on 2019-05-14

1984 The conformational and mutational landscape of the ubiquitin-like marker for the autophagosome formation in cancer

Aykac Fas, B.; Kumar, M.; Sora, V.; Mashkoor, M.; Lambrughi, M.; Tiberti, M.; Papaleo, E.

10.1101/635284 — cancer biology — Posted on 2019-05-14

1985 Are protein-ligand complexes robust structures?

Majewski, M.; Ruiz Carmona, S.; Barril, X.

10.1101/454165 — biophysics — Posted on 2019-05-14

1986 Differential binding cell-SELEX method to identify cell-specific aptamers using high-throughput sequencing

Pleiko, K.; Saulite, L.; Parfejevs, V.; Miculis, K.; Vjaters, E.; Riekstina, U.

10.1101/466722 — molecular biology — Posted on 2019-05-14

1987 Identification of novel risk loci with shared effects on alcoholism, heroin and methamphetamine dependence

Sun, Y.; Chang, S.; Liu, Z.; Zhang, L.; Wang, F.; Yue, W.; Sun, H.; Ni, Z.; Chang, X.; Zhang, Y.; Liu, J.; Chen, Y.; Lu, L.; Shi, J.

10.1101/505917 — genomics — Posted on 2019-05-14

1988 Nest-site detection and estimation of avian reproductive outcome from GPS-tracking data

Picardi, S.; Smith, B. J.; Boone, M. E.; Frederick, P. C.; Cecere, J. G.; Rubolini, D.; Serra, L.; Pirrello, S.; Borkhataria, R. R.; Basille, M.

10.1101/562025 — ecology — Posted on 2019-05-14

1989 Modeling of SF3B1 cancer-related missense mutations in C. elegans uncovers targets for synthetic lethal interactions

Serrat, X.; Kukhtar, D.; Cornes, E.; Esteve-Codina, A.; Benlloch, H.; Cecere, G.; Ceron, J.

10.1101/634634 — cancer biology — Posted on 2019-05-14

1990 chroGPS2: differential analysis of epigenome maps in R.

Reina, O.; Azorin, F.; Stephan-Otto Attolini, C.

10.1101/425892 — bioinformatics — Posted on 2019-05-14

1991 Bridging traditional evolutionary game theory and metabolic models for predicting Nash equilibrium of microbial metabolic interactions

Cai, J.; Tan, T.; Chan, S. H. J.

10.1101/623173 — systems biology — Posted on 2019-05-14

1992 Simple, biologically informed models of human target detection, but not convolutional networks generalize between naturalistic and artificial images

Fruend, I.

10.1101/578633 — neuroscience — Posted on 2019-05-14

1993 Classification of visual cortex plasticity phenotypes following treatment for amblyopia

Balsor, J.; Jones, D. G.; Murphy, K. M.

10.1101/554576 — neuroscience — Posted on 2019-05-14

1994 GABA-Glutamate supramammillary neurons control theta and gamma oscillations in the dentate gyrus during paradoxical (REM) sleep

Billwiller, F.; Castillo, L.; Elseedy, H.; Ivanov, A. I.; Scapula, J.; Ghestem, A.; Carponcy, J.; Libourel, P. A.; Bras, H.; Abdelmeguid, N. E.; Krook-Magnuson, E.; Soltesz, I.; Bernard, C.; Luppi, P.-H.; Esclapez, M.

10.1101/584862 — neuroscience — Posted on 2019-05-14

1995 Identifying Drug Sensitivity Subnetworks with NETPHIX

Kim, Y.-A.; Sarto Basso, R.; Wojtowicz, D.; Hochbaum, D. S.; Vandin, F.; Przytycka, T. M.

10.1101/543876 — bioinformatics — Posted on 2019-05-14

1996 Host Genetic Background and Gut Microbiota Contribute to Differential Metabolic Responses to High Fructose Consumption in Mice

Ahn, I. S.; Lang, J. M.; Olson, C.; Zhang, G.; Ying, Z.; Byun, H. R.; Diamante, G.; Cely, I.; Ding, J.; Kurtz, I.; Gomez-Pinilla, F.; Hsiao, E.; Lusis, A. J.; Yang, X.

10.1101/439786 — systems biology — Posted on 2019-05-14

1997 Age-differences in functional asymmetry during memory retrieval revisited: no evidence for contralateral over-activation or compensation

Roe, J. M.; Vidal-Pineiro, D.; Sneve, M. H.; Kompus, K.; Greve, D.; Walhovd, K. B. B.; Fjell, A. M. M.; Westerhausen, R.

10.1101/419739 — neuroscience — Posted on 2019-05-14

1998 A Modeling Framework for Exploring Sampling and Observation Process Biases in Genome and Phenome-wide Association Studies using Electronic Health Records

Beesley, L. J.; Fritsche, L. G.; Mukherjee, B.

10.1101/499392 — epidemiology — Posted on 2019-05-14

1999 NGSEA: network-based gene set enrichment analysis for interpreting gene expression phenotypes with functional gene sets

Han, H.; Lee, S.; Lee, I.

10.1101/636498 — bioinformatics — Posted on 2019-05-14

2000 Various components of the RNAi pathway are required for conidiation, ascosporogenesis, virulence, DON production and SIGS-mediated fungal inhibition by exogenous dsRNA in the Head Blight pathogen Fusarium graminearum

Gaffar, F. Y.; Imani, J.; Karlovsky, P.; Koch, A.; Kogel, K.-H.

10.1101/633099 — pathology — Posted on 2019-05-14

2001 KPHMMER: Hidden Markov Model generator for detecting KEGG PATHWAY-specific genes.

Suetake, H.; Kotera, M.

10.1101/636290 — pathology — Posted on 2019-05-14

2002 Deep-learning enables proteome-scale identification of phase-separated protein candidates from immunofluorescence images

Yu, C.; Shen, B.; Huang, Q.; Shi, M.; You, K.; Wu, C.; Chen, Y.; Li, T.

10.1101/636738 — bioinformatics — Posted on 2019-05-14

2003 FreeHi-C: high fidelity Hi-C data simulation for benchmarking and data augmentation

Zheng, Y.; Keles, S.

10.1101/629923 — bioinformatics — Posted on 2019-05-14

2004 A genomic approach to inferring kinship reveals limited intergenerational dispersal in the yellow fever mosquito

Jasper, M.; Schmidt, T.; Ahmad, N.; Sinkins, S.; Hoffmann, A.

10.1101/636456 — ecology — Posted on 2019-05-14

2005 Underlying Genomic Mechanism for Cell-Fate Change from Embryo to Cancer Development

Tsuchiya, M.; Giuliani, A.; Yoshikawa, K.

10.1101/637033 — cell biology — Posted on 2019-05-14

2006 The membrane insertion of soluble CLIC1 into active chloride channels is triggered by specific divalent cations

Varela, L.; Hendry, A. C.; Cantoni, D.; Ortega-Roldan, J. L.

10.1101/638080 — biochemistry — Posted on 2019-05-14

2007 Molecular basis of EMRE-dependence of the human mitochondrial calcium uniporter

MacEwen, M. J. S.; Markhard, A. L.; Bozbeyoglu, M.; Bradford, F.; Goldberger, O.; Mootha, V. K.; Sancak, Y.

10.1101/637918 — biochemistry — Posted on 2019-05-14

2008 High-throughput propagation of human prostate tissue from induced-pluripotent stem cells

Hepburn, A.; Curry, E.; Moad, M.; Steele, R.; Franco, O.; Wilson, L.; Singh, P.; Crawford, S.; Gaughan, L.; Mills, I.; Hayward, S.; Robson, C.; Heer, R.

10.1101/637876 — developmental biology — Posted on 2019-05-14

2009 Spatial Distribution of Cholesterol in Lipid Bilayers

Aghaaminiha, M.; Sharma, S.

10.1101/636845 — biophysics — Posted on 2019-05-14

2010 Quantification of DNA damage induced γH2AX focus formation via super-resolution dSTORM localization microscopy

Varga, D.; Majoros, H.; Ujfaludi, Z.; Erdelyi, M.; Pankotai, T.

10.1101/638361 — cell biology — Posted on 2019-05-14

2011 Efficient RNA-mediated reprogramming of human somatic cells to naive pluripotency facilitated by tankyrase inhibition

Bredenkamp, N.; Yang, J.; Clarke, J.; Stirparo, G. G.; von Meyenn, F.; Baker, D.; Drummond, R.; Li, D.; Wu, C.; Rostovskaya, M.; Smith, A.; Guo, G.

10.1101/636670 — developmental biology — Posted on 2019-05-14

2012 LIR-dependent LMX1A/LMX1B autophagy crosstalk shapes human midbrain dopaminergic neuronal resilience

Lane, J. D.; Jimenez-Moreno, N.; Stathakos, P.; Anton, Z.; Shoemark, D.; Sessions, R.; Witzgall, R.; Caldwell, M.

10.1101/636712 — cell biology — Posted on 2019-05-14

2013 Mitotic ER exit site dissociation is mediated by TANGO1 phosphorylation with CK1.

Maeda, M.; Komatsu, Y.; Saito, K.

10.1101/636506 — cell biology — Posted on 2019-05-14

2014 Electron cryomicroscopy observation of acyl carrier protein translocation in type I fungal fatty acid synthase

Lou, J. W.; Iyer, K. R.; Hasan, S. M. N.; Cowen, L. E.; Mazhab-Jafari, M. T.

10.1101/636167 — biophysics — Posted on 2019-05-14

2015 Septin 2/6/7 complexes tune microtubule plus end growth and EB1 binding in a concentration-dependent manner

Nakos, K.; Radler, M. R.; Spiliotis, E. T.

10.1101/638296 — cell biology — Posted on 2019-05-14

2016 Simultaneous regulation of cytokinetic furrow and nucleus positions by cortical tension contributes to proper DNA segregation during late mitosis

Pacquelet, A.; Jousseaume, M.; Etienne, J.; Michaux, G.

10.1101/626903 — cell biology — Posted on 2019-05-14

2017 A role for the Saccharomyces cerevisiae ABCF protein New1 during translation termination

Kasari, V.; Pochopien, A. A.; Margus, T.; Murina, V.; Zhou, Y.; Nissan, T.; Graf, M.; Novacek, J.; Atkinson, G. C.; Johansson, M. J. O.; Wilson, D. N.; Hauryliuk, V.

10.1101/638064 — biochemistry — Posted on 2019-05-14

2018 A New Model for Single-Molecule Tracking Analysis of Transcription Factor Dynamics

Garcia, D. A.; Fettweis, G.; Presman, D. M.; Paakinaho, V.; Jarzynski, C.; Upadhyaya, A.; Hager, G. L.

10.1101/637355 — biophysics — Posted on 2019-05-14

2019 Manganese/iron-supported sulfate-dependent anaerobic oxidation of methane by archaea in lake sediments

Su, G.; Zopfi, J.; Yao, H.; Steinle, L.; Niemann, H.; Lehmann, M.

10.1101/636621 — microbiology — Posted on 2019-05-14

2020 Adrenergic-melatonin heteroreceptor complexes are key in controlling ion homeostasis and intraocular eye pressure and their disruption contributes to hypertensive glaucoma

Alkozi, H. A.; Navarro, G.; Aguinaga, D.; Reyes-Resina, I.; Sanchez-Naves, J.; Perez de Lara, M. J.; Franco, R.; Pintor, J. J.

10.1101/636688 — physiology — Posted on 2019-05-14

2021 Detection and quantification of house mouse Eimeria at the species level - challenges and solutions for the assessment of Coccidia in wildlife

Jarquin-Diaz, V. H.; Balard, A.; Jost, J.; Kraft, J.; Dikmen, M. N.; Jana, K.; Heitlinger, E.

10.1101/636662 — microbiology — Posted on 2019-05-14

2022 Genome-wide association study of susceptibility to idiopathic pulmonary fibrosis

Allen, R. J.; Guillen-Guio, B.; Oldham, J. M.; Ma, S.-F.; Dressen, A.; Paynton, M. L.; Kraven, L. M.; Obeidat, M.; Li, X.; Ng, M.; Braybrooke, R.; Molina-Molina, M.; Hobbs, B. D.; Putman, R. K.; Sakornsakolpat, P.; Booth, H. L.; Fahy, W. A.; Hart, S. P.; Hill, M. R.; Hirani, N.; Hubbard, R. B.; McAnulty, R. J.; Millar, A. B.; Navaratnam, V.; Oballa, E.; Parfrey, H.; Saini, G.; Whyte, M. K.; Gudmundsson, G.; Gudnason, V.; Hatabu, H.; Lederer, D. J.; Manichaikul, A.; Newell, J. D.; O'Connor, G. T.; Ortega, V. E.; Xu, H.; Fingerlin, T. E.; Bosse, Y.; Hao, K.; Joubert, P.; Nickle, D. C.; Sin, D.

10.1101/636761 — genomics — Posted on 2019-05-14

2023 Age and mortality associated DNA methylation patterns on the X-chromosome in male and female samples

Li, S.; Lund, J. B.; Baumbach, J.; Christensen, K.; Mengel-From, J.; Li, W.; Mohammadnejad, A.; Pattie, A.; Marioni, R. E.; Deary, I. J.; Tan, Q.

10.1101/636597 — genetics — Posted on 2019-05-14

2024 High throughput Characterization of KCNB1 variants Associated with Developmental and Epileptic Encephalopathy

Kang, S. K.; Vanoye, C. G.; Misra, S. N.; Echevarria, D. M.; Calhoun, J. D.; O'Connor, J. B.; Fabre, K. L.; McKnight, D.; Demmer, L.; Goldenberg, P.; Grote, L. E.; Thiffault, I.; Saunders, C.; Strauss, K. A.; Torkamani, A.; van der Smagt, J.; van Gassen, K.; Carson, R. P.; Diaz, J.; Leon, E.; Jacher, J. E.; Hannibal, M. C.; Litwin, J.; Friedman, N. R.; Schreiber, A.; Lynch, B.; Poduri, A.; Marsh, E. D.; Goldberg, E. M.; Millichap, J. J.; George, A. L.; Kearney, J.

10.1101/637041 — genetics — Posted on 2019-05-14

2025 Machine learning to detect Alzheimer’s disease from circulating non-coding RNAs

Ludwig, N.; Fehlmann, T.; Gogol, M.; Maetzler, W.; Deutscher, S.; Gurlit, S.; Schulte, C.; von Thaler, A.-K.; Deuschle, C.; Metzger, F.; Berg, D.; Suenkel, U.; Keller, V.; Backes, C.; Lenhof, H.-P.; Meese, E.; Keller, A.

10.1101/638213 — bioinformatics — Posted on 2019-05-14

2026 Visual self-motion feedback affects the sense of self in virtual reality

Schettler, A.; Holstead, I.; Turri, J.; Barnett-Cowan, M.

10.1101/636944 — neuroscience — Posted on 2019-05-14

2027 When tension is exciting: an electroencephalogram exploration of excitement in music

Turrell, A.; Halpern, A.; Javadi, A.-H.

10.1101/637983 — neuroscience — Posted on 2019-05-14

2028 Content tuning in the medial temporal lobe cortex: Voxels that perceive, retrieve

Schultz, H.; Tibon, R.; LaRocque, K. F.; Gagnon, S. A.; Wagner, A. D.; Staresina, B. P.

10.1101/635128 — neuroscience — Posted on 2019-05-14

2029 Seeing relationships: The specialization for a two-body shape in human visual perception

Abassi, E.; Papeo, L.

10.1101/637082 — neuroscience — Posted on 2019-05-14

2030 Retinal outputs depend on behavioural state

Schröder, S.; Steinmetz, N. A.; Krumin, M.; Pachitariu, M.; Rizzi, M.; Lagnado, L.; Harris, K. D.; Carandini, M.

10.1101/638049 — neuroscience — Posted on 2019-05-14

2031 Parameter tuning differentiates granule cell subtypes enriching the repertoire of retransmission properties at the cerebellum input stage

Masoli, S.; Tognolina, M.; Laforenza, U.; Moccia, F.; D'Angelo, E.

10.1101/638247 — neuroscience — Posted on 2019-05-14

2032 A zero-inflated gamma model for post-deconvolved calcium imaging traces

Wei, X.-X.; Zhou, D.; Grosmark, A.; Ajabi, Z.; Sparks, F.; Zhou, P.; Brandon, M.; Losonczy, A.; Paninski, L.

10.1101/637652 — neuroscience — Posted on 2019-05-14

2033 A single cell brain atlas in human Alzheimer’s disease

Grubman, A.; Chew, G.; Ouyang, J. F.; Sun, G.; Choo, X. Y.; McLean, C.; Simmons, R.; Buckberry, S.; Vargas-Landin, D.; Pflueger, J.; Lister, R.; Rackham, O. J. L.; Petretto, E.; Polo, J. M.

10.1101/628347 — neuroscience — Posted on 2019-05-14

2034 Rapid adaptation to elevated extracellular potassium in the pyloric circuit of the crab, Cancer borealis

He, L. S.; Rue, M. C. P.; Morozova, E. O.; Powell, D. J.; James, E. J.; Kar, M.; Marder, E.

10.1101/636910 — neuroscience — Posted on 2019-05-14

2035 Enhanced and Unified Anatomical Labeling for a Common Mouse Brain Atlas

Chon, U.; Vanselow, D. J.; Cheng, K. C.; Kim, Y.

10.1101/636175 — neuroscience — Posted on 2019-05-14

2036 Transcription of a plasticity gene is activated by neuronal hyperpolarization

Zhu, Z.; Sanchez Ortiz, T.; Mezan, S.; Kadener, S.; Blau, J.

10.1101/636878 — neuroscience — Posted on 2019-05-14

2037 The Pontine Nuclei are an Integrative Cortico-Cerebellar Link Critical for Dexterity

Guo, J.-Z.; Sauerbrei, B.; Cohen, J.; Mischiati, M.; Graves, A.; Pisanello, F.; Branson, K.; Hantman, A.

10.1101/637447 — neuroscience — Posted on 2019-05-14

2038 Presynaptic modulation of inhibitory synaptic feedback via GABAB receptors in the avian cochlear nucleus angularis

Eisenbach, S. L.; Soueidan, S. E.; MacLeod, K. M.

10.1101/619783 — neuroscience — Posted on 2019-05-14

2039 Reduced Cognitive Performance in Aged Rats Correlates with Increased Excitation/Inhibition Ratio in the Dentate Gyrus in Response to Lateral Entorhinal Input

Tran, T.; Bridi, M.; Gallagher, M.; Kirkwood, A.

10.1101/637439 — neuroscience — Posted on 2019-05-14

2040 Adult neurogenesis promotes efficient, nonspecific search strategies in a spatial alternation water maze task

Yu, R. Q.; Cooke, M. B.; Zhao, J.; Snyder, J.

10.1101/637462 — neuroscience — Posted on 2019-05-14

2041 TRESK background K+ channel deletion selectively uncovers enhanced mechanical and cold sensitivity

Castellanos, A.; Pujol-Coma, A.; Andres-Bilbe, A.; Negm, A.; Callejo, G.; Soto, D.; Noël, J.; Comes, N.; Gasull, X.

10.1101/636829 — neuroscience — Posted on 2019-05-14

2042 The Paraventricular Thalamus is a Critical Mediator of Top-down Control of Cue-motivated Behavior

Campus, P.; Covelo, I. R.; Kim, Y.; Parsegian, A.; Kuhn, B.; Lopez, S. A.; Neumaier, J.; Ferguson, S.; Solberg Woods, L. C.; Sarter, M.; Flagel, S. B.

10.1101/637702 — neuroscience — Posted on 2019-05-14

2043 Developmental changes in connectivity between the amygdala subnuclei and occipitotemporal cortex

Hansen, H. A.; Saygin, Z. M.

10.1101/636894 — neuroscience — Posted on 2019-05-14

2044 Mutant screen reveals depression-associated Piccolo’s control over brain-gonad cross talk and reproductive behavior

A. Medrano, G.; Singh, ; J. Plautz, E.; B. Good, L.; M. Chapman, K.; Chaudhary, J.; Jaichander, P.; M. Powell, H.; Pudasaini, A.; M. Shelton, J.; A. Richardson, J.; Xie, X.-J.; Ivics, Z.; Braun, C.; Ackermann, F.; C. Garner, C.; Izsvak, Z.; Hamra, F. K.

10.1101/405985 — genetics — Posted on 2019-05-14

2045 Maintenance of homeostatic plasticity at the Drosophila neuromuscular junction requires continuous IP3-directed signaling

James, T. D.; Zwiefelhofer, D. J.; Frank, C. A.

10.1101/356436 — neuroscience — Posted on 2019-05-14

2046 Limited One-time Sampling Irregularity Map (LOTS-IM) for Automatic Unsupervised Assessment of White Matter Hyperintensities and Multiple Sclerosis Lesions in Structural Brain Magnetic Resonance Images

Rachmadi, M. F.; Valdes Hernandez, M.; Li, H.; Guerrero, R.; Meijboom, R.; Wiseman, S.; Waldman, A.; Zhang, J.; Rueckert, D.; Wardlaw, J.; Komura, T.

10.1101/334292 — neuroscience — Posted on 2019-05-14

2047 A genomics approach reveals the global genetic polymorphism, structure and functional diversity of ten accessions of the marine model diatom Phaeodactylum tricornutum

Rastogi, A.; Rocha Jimenez Vieira, F.; Deton Cabanilas, A. F.; Veluchamy, A.; Cantrel, C.; Wang, G.; Vanormelingen, P.; Bowler, C.; Piganeau, G.; Hu, H.; TIRICHINE, L.

10.1101/176008 — genomics — Posted on 2019-05-14

2048 Aberrant DNA methylation of miRNAs in Fuchs endothelial corneal dystrophy

Pan, P.; Weisenberger, D. J.; Zheng, S.; Wolf, M.; Hwang, D. G.; Rose-Nussbaumer, J. R.; Jurkunas, U. V.; Chan, M. F.

10.1101/638486 — genetics — Posted on 2019-05-14

2049 Contribution of livestock marketing chains and role played by stakeholders knowledge, attitude and practice in spreading cystic hydatidosis to Busia Town, Kenya, 2018.

Ogutu, H. J.; Owiny, M. O.; Bett, B.; Otieno, C.

10.1101/638502 — epidemiology — Posted on 2019-05-14

2050 De novo organelle biogenesis in the cyanobacterium TDX16 released from the green alga Haematococcus pluvialis

Dong, Q.-l.; Xing, X.-y.; Han, Y.; Wei, X.-l.; Zhang, S.

10.1101/161463 — cell biology — Posted on 2019-05-14

2051 Immune state networks of wild and laboratory mice

Fonseca dos Reis, E.; Masuda, N.; Viney, M.

10.1101/638445 — systems biology — Posted on 2019-05-14

2052 Aβ42 oligomers trigger synaptic loss through CAMKK2-AMPK-dependent effectors coordinating mitochondrial fission and mitophagy

Lee, A.; Kondapalli, C.; Virga, D. M.; Lewis, T. L.; Koo, S. Y.; Ashok, A.; Mairet-Coello, G.; Herzig, S.; Shaw, R.; Sproul, A.; Polleux, F.

10.1101/637199 — neuroscience — Posted on 2019-05-14

2053 Low additive genetic variation in a trait under selection in domesticated rice

Karavolias, N. G.; Greenberg, A. J.; Barrero, L. S.; Maron, L. G.; Shi, Y.; Monteverde, E.; Pineros, M. A.; McCouch, S. R.

10.1101/637330 — genetics — Posted on 2019-05-14

2054 Thermal stress responses of Sodalis glossinidius, an indigenous bacterial symbiont of hematophagous tsetse flies

Roma, J. S.; DSouza, S.; Somers, P. J.; Cabo, L. F.; Farsin, R.; Aksoy, S.; Runyen-Janecky, L. J.; Weiss, B. L.

10.1101/638494 — microbiology — Posted on 2019-05-14

2055 Proxies of CRISPR-Cas9 activity to aid in the identification of mutagenized Arabidopsis plants

Li, R.; Vavrik, C.; Danna, C. H.

10.1101/637314 — genetics — Posted on 2019-05-14

2056 Staphylococcus aureus infects osteoclasts and replicates intracellularly

Roper, P.; Krauss, J.; Ballard, A.; Shih, C.-C.; Fitzpatrick, J.; Cassat, J.; Ng, P. Y.; Pavlos, N.; Veis, D.

10.1101/638528 — cell biology — Posted on 2019-05-14

2057 The Salt-Inducible Kinase inhibitor YKL-05-099 suppresses MEF2C function and acute myeloid leukemia progression in vivo

Tarumoto, Y.; Lin, S.; Wang, J.; Milazzo, J.; Xu, Y.; Gray, N.; Stegmaier, K.; Vakoc, C.

10.1101/636969 — cancer biology — Posted on 2019-05-14

2058 Analyzing the weak dimerization of a cellulose binding module by sedimentation velocity experiments

Fedorov, D.; Batys, P.; Sammalkorpi, M.; Linder, M. B.

10.1101/638320 — biophysics — Posted on 2019-05-14

2059 Computational simulation of the reactive oxygen species and redox network in the regulation of chloroplast metabolism

Dietz, K.-J.; Gerken, M.; Kakorin, S.; Chibani, K.

10.1101/638437 — plant biology — Posted on 2019-05-14

2060 Animal model and therapeutic prospects for left ventricular hypertrophy and associated renal complication

Ahmad, A.; Riaz, Z.; Sattar, M. A.; Khan, S. A.; John, E. J.; Arshad, S.; Shah, S. T. A.; Rafiq, M. A.; Qamar, R.; Azam, M.

10.1101/638353 — pharmacology and toxicology — Posted on 2019-05-14

2061 Oxytocin, Compulsion and Epilepsy: Insights from a Complex Behavioral and Neuronal Networks Association

Marroni, S.; Rodrigues Santos, V.; Castro, O. W.; Tejada, J.; Santos, J. C.; Cortes de Oliveira, J. A.; Garcia-Cairasco, N.

10.1101/638452 — neuroscience — Posted on 2019-05-14

2062 Discovery, Expression, Cellular Localization, and Molecular Properties of a Novel, Alternative Spliced HP1g Isoform, Lacking the Chromoshadow Domain

Mathison, A.; Milech de Assuncao, T.; Dsouza, N. R.; Williams, M.; Zimmermann, M. T.; Lomberk, G.; Urrutia, R.

10.1101/638395 — molecular biology — Posted on 2019-05-14

2063 Isolation and Diversity of Sediment Bacteria in the Hypersaline Aiding Lake, China

Guan, T.-W.; Lin, Y.-J.; Ou, M.-Y.; Chen, K.-B.

10.1101/638304 — microbiology — Posted on 2019-05-14

2064 Comparison of the predictive values of diagnostic tests subject to a case-control sampling with application to the diagnosis of Human African Trypanosomiasis

Roldan-Nofuentes, J. A.; Sidaty-Regad, S. B.

10.1101/638379 — epidemiology — Posted on 2019-05-14

2065 Addiction of mesenchymal phenotypes on the FGF/FGFR axis in oral squamous cell carcinoma cells

Saitoh, M.; Osada, A. H.; Endo, K.; Kimura, Y.; Sakamoto, K.; Nakamura, R.; Sakamoto, K.; Ueki, K.; Yoshizawa, K.; Miyazawa, K.

10.1101/638387 — cancer biology — Posted on 2019-05-14

2066 Active poroelastic Two-Phase Model for the Motion of Physarum Microplasmodia

Kulawiak, D. A.; Löber, J.; Bär, M.; Engel, H.

10.1101/638312 — biophysics — Posted on 2019-05-14

2067 Evolution-driven attenuation of alphaviruses highlights key glycoprotein determinants regulating viral infectivity and dissemination

Noval, M. G.; Rodriguez-Rodriguez, B. A.; Rangel, M. V.; Stapleford, K. A.

10.1101/636779 — microbiology — Posted on 2019-05-14

2068 Metastatic breast cancer cells induce altered microglial morphology and electrical excitability in vivo

Simon, A.; Yang, M.; Marrison, J. L.; James, A. D.; O'Toole, P. J.; Kaye, P. M.; Whittington, M. A.; Chawla, S.; Brackenbury, W.

10.1101/636159 — cancer biology — Posted on 2019-05-14

2069 Predator recognition and anti-predatory behaviour in a recent aquatic invader, the killer shrimp (Dikerogammarus villosus)

Rolla, M.; Consuegra, S.; Garcia de Leaniz, C.

10.1101/636100 — ecology — Posted on 2019-05-14

2070 Seasonal and depth variations in diet composition and dietary overlap between three native killifish of an emblematic tropical-mountain lake: Lake Titicaca (Bolivia)

Loayza, E.

10.1101/635821 — ecology — Posted on 2019-05-14

2071 Structural basis for ligand-induced inactivation of protein tyrosine receptor type Z (PTPRZ): Physiological relevance of head-to-toe RPTP dimerization

Fujikawa, A.; Sugawara, H.; Tanga, N.; Ishii, K.; Kuboyama, K.; Uchiyama, S.; Suzuki, R.; Noda, M.

10.1101/636423 — biochemistry — Posted on 2019-05-14

2072 Efficient pan-cancer whole-slide image classification and outlier detection using convolutional neural networks

Bilaloglu, S.; Wu, J.; Fierro, E.; Sanchez, R. D.; Ocampo, P. S.; Razavian, N.; Coudray, N.; Tsirigos, A.

10.1101/633123 — pathology — Posted on 2019-05-14

2073 Multivariate Pattern Classification of Primary Insomnia Using Three Types of Functional Connectivity Features

Li, C.; Mai, Y.; Dong, M.; Yin, Y.; Hua, K.; Fu, S.; Wu, Y.; Jiang, G.

10.1101/532127 — neuroscience — Posted on 2019-05-13

2074 Dynamics of transcription-dependent H3K36me3 marking by the SETD2:IWS1:SPT6 ternary complex

Cermakova, K.; Smith, E. A.; Veverka, V.; Hodges, H. C.

10.1101/636084 — genomics — Posted on 2019-05-14

2075 Quantifying Three-dimensional Chromatin Organization Utilizing Scanning Transmission Electron Microscopy: ChromSTEM

Li, Y.; Roth, E. W.; Agrawal, V.; Eshein, A.; Frederick, J.; Almassalha, L. M.; Shim, A.; Bleher, R.; Dravid, V. P.; Backman, V.

10.1101/636209 — genomics — Posted on 2019-05-14

2076 Transcriptional profiling of Impatiens walleriana genes through different stages of downy mildew infection reveals novel genes involved in disease susceptibility

Suarez, S.; Naveed, Z. A.; Ali, G.

10.1101/622480 — plant biology — Posted on 2019-05-13

2077 Distinct RopGEFs successively drive polarization and outgrowth of root hairs

Denninger, P.; Reichelt, A.; Schmidt, V. A. F. A. F.; Mehlhorn, D. G.; Asseck, L. Y.; Stanley, C. E.; Keinath, N. F.; Evers, J. F.; Grefen, C.; Grossmann, G.

10.1101/534545 — plant biology — Posted on 2019-05-13

2078 Asymmetry in kinematic generalisation between visual and passive lead-in movements are consistent with a forward model in the sensorimotor system

Howard, I. S.; Franklin, S.; Franklin, D. W.

10.1101/636266 — neuroscience — Posted on 2019-05-13

2079 Cus2 enforces the first ATP-dependent step of splicing by binding to yeast SF3b1 through a UHM-ULM interaction

Talkish, J.; Igel, H.; Hunter, O.; Horner, S. W.; Jeffery, N. N.; Leach, J. R.; Jenkins, J. L.; Kielkopf, C. L.; Ares, M.

10.1101/534347 — molecular biology — Posted on 2019-05-13

2080 Hypermutation in Cryptococcus reveals anovel pathway to 5-fluorocytosine (5FC) resistance

Billmyre, R. B.; Applen Clancey, S.; Li, L. X.; Doering, T. L.; Heitman, J.

10.1101/636928 — microbiology — Posted on 2019-05-13

2081 Drug-resistant epimutants exhibit organ-specific stability and induction during murine infections caused by the human fungal pathogen Mucor circinelloides

Chang, Z.; Heitman, J.

10.1101/636050 — microbiology — Posted on 2019-05-13

2082 Multiplexed dissection of a model human transcription factor binding site architecture

Davis, J. E.; Insigne, K. D.; Jones, E. M.; Hastings, Q.; Kosuri, S.

10.1101/625434 — genomics — Posted on 2019-05-13

2083 Neuromesodermal progenitors separate the axial stem zones while producing few single- and dual-fated descendants

Wood, T. R.; Kyrsting, A. R.; Stegmaier, J.; Kucinski, I.; Kaminski, C. F.; Mikut, R.; Voiculescu, O.

10.1101/622571 — developmental biology — Posted on 2019-05-13

2084 Regulation of tau’s proline rich region by its N-terminal domain

McKibben, K.; Rhoades, E.

10.1101/633420 — biophysics — Posted on 2019-05-13

2085 Human cardiac fibrosis-on-a-chip model recapitulates disease hallmarks and can serve as a platform for drug screening

Mastikhina, O. N.; Moon, B.-U.; Williams, K.; Hatkar, R.; Gostafson, D.; Sun, X.; Koo, M.; Lam, A.; Sun, Y.; Fish, J. E.; Young, E. W.; Nunes, S. S.

10.1101/632406 — bioengineering — Posted on 2019-05-13

2086 Simulation of multiple microenvironments shows a putative role of RPTPs on the control of Epithelial-to-Mesenchymal Transition.

Pais, R. J.

10.1101/609263 — systems biology — Posted on 2019-05-13

2087 Uncovering the Binding Mode of γ-Secretase Inhibitors

Hitzenberger, M.; Zacharias, M.

10.1101/611194 — biophysics — Posted on 2019-05-13

2088 Fast and Accurate Clustering of Single Cell Epigenomes Reveals Cis-Regulatory Elements in Rare Cell Types

Fang, R.; Preissl, S.; Hou, X.; Lucero, J.; Wang, X.; Motamedi, A.; Shiau, A. K.; Mukamel, E. A.; Zhang, Y.; Behrens, M. M.; Ecker, J.; Ren, B.

10.1101/615179 — bioinformatics — Posted on 2019-05-13

2089 Separation of hemodynamic signals from GCaMP fluorescence measured with widefield imaging

Valley, M. T.; Moore, M.; Zhuang, J.; Mesa, N.; Castelli, D.; Sullivan, D.; Reimers, M.; Waters, J.

10.1101/634923 — neuroscience — Posted on 2019-05-13

2090 Quantitative proteomics revealed a tight correlation between mitotic phosphorylation/dephosphorylation and structural properties of substrate domains

Yamazaki, H.; Kosako, H.; Yoshimura, S. H.

10.1101/636407 — cell biology — Posted on 2019-05-13

2091 The Glycolytic Protein Phosphofructokinase Dynamically Relocalizes into Subcellular Compartments with Liquid-like Properties in vivo

Jang, S.; Xuan, Z.; Lagoy, R. C.; Jawerth, L. M.; Gonzalez, I.; Singh, M.; Prashad, S.; Kim, H. S.; Patel, A.; Albrecht, D. R.; Hyman, A. A.; Colon-Ramos, D.

10.1101/636449 — cell biology — Posted on 2019-05-13

2092 High risk glioblastoma cells revealed by machine learning and single cell signaling profiles

Leelatian, N.; Sinnaeve, J.; Mistry, A. M.; Barone, S. M.; Diggins, K. E.; Greenplate, A. R.; Weaver, K. D.; Thompson, R. C.; Chambless, L. B.; Mobley, B. C.; Ihrie, R. A.; Irish, J. M.

10.1101/632208 — cancer biology — Posted on 2019-05-13

2093 Establishing reference samples for detection of somatic mutations and germline variants with NGS technologies

Fang, L. T.; Zhu, B.; Zhao, Y.; Chen, W.; Yang, Z.; Kerrigan, L.; Langenbach, K.; de Mars, M.; Lu, C.; Idler, K.; Jacob, H.; Yu, Y.; Ren, L.; Zheng, Y.; Jaeger, E.; Schroth, G.; Abaan, O.; Lack, J.; Shen, T.-W.; Talsania, K.; Chen, Z.; Stanbouly, S.; Shetty, J.; Tran, B.; Meerzaman, D.; Nguyen, C.; Petitjean, V.; Sultan, M.; Cam, M.; Hung, T.; Peters, E.; Kalamegham, R.; Sahraeian, S. M. E.; Mohiyuddin, M.; Guo, Y.; Yao, L.; Song, L.; Lam, H. H.; Drabek, J.; Maestro, R.; Gasparotto, D.; Koks, S.; Reimann, E.; Scherer, A.; Nordlund, J.; Liljedahl, U.; Jensen, R.; Pirooznia, M.; Li, Z.; Xiao, C.

10.1101/625624 — bioinformatics — Posted on 2019-05-13

2094 Toffee - a highly efficient, lossless file format for DIA-MS

Tully, B.

10.1101/628933 — bioinformatics — Posted on 2019-05-13

2095 Prediction of a plant intracellular metabolite content class using image-based deep learning

Krishnan, N. M.; Panda, B.

10.1101/488783 — bioinformatics — Posted on 2019-05-13

2096 The cloud forest in the Dominican Republic: diversity and conservation status

Cano Ortiz, A.; Musarella, C. M.; Quinto Canas, R.; Pinar Fuentes, J. C.; Pinto Gomes, C. J.; Cano, E.

10.1101/543892 — plant biology — Posted on 2019-05-13

2097 Discovery of an essential mycobacterial polar growth factor involved in cell envelope integrity and LM/LAM transport

Gupta, K. R.; Rahlwes, K. C.; Wang, C.; Liu, J.; Morita, Y. S.; Rego, E. H.

10.1101/633768 — microbiology — Posted on 2019-05-13

2098 UK phenomics platform for developing and validating EHR phenotypes: CALIBER

Denaxas, S.; Gonzalez-Izquierdo, A.; Direk, K.; Fitzpatrick, N.; Fatemifar, G.; Banerjee, A.; Dobson, R.; Howe, L. J.; Kuan, V.; Lumbers, T.; Pasea, L.; Patel, R.; Shah, A. D.; Hingorani, A.; Sudlow, C.; Hemingway, H.

10.1101/539403 — epidemiology — Posted on 2019-05-13

2099 Comparative analysis of diverse cell states establishes an epigenetic basis for inferring regulatory genes governing cell identity

10.1101/635516 — cell biology — Posted on 2019-05-13

2100 PRAM: a novel pooling approach for discovering intergenic transcripts from large-scale RNA sequencing experiments

Liu, P.; Soukup, A. A.; Bresnick, E. H.; Dewey, C. N.; Keles, S.

10.1101/636282 — bioinformatics — Posted on 2019-05-13

2101 Waterborne, abiotic and other indirectly transmitted (W.A.I.T.) infections are defined by the dynamics of free-living pathogens and environmental reservoirs

Miller-Dickson, M.; Meszaros, V. A.; Baffour-Awuah Junior, F.; Almagro-Moreno, S.; Ogbunugafor, C. B.

10.1101/525089 — systems biology — Posted on 2019-05-13

2102 Reducing false positives in tractography with microstructural and anatomical priors

Schiavi, S.; Barakovic, M.; Ocampo Pineda, M.; Descoteaux, M.; Thiran, J.-P.; Daducci, A.

10.1101/608349 — neuroscience — Posted on 2019-05-13

2103 Are place cells just memory cells? Memory compression leads to spatial tuning and history dependence

Benna, M. K.; Fusi, S.

10.1101/624239 — neuroscience — Posted on 2019-05-13

2104 Relapse prevention through health technology program reduces hospitalization in schizophrenia

Homan, P.; Schooler, N. R.; Brunette, M. F.; Rotondi, A.; Ben-Zeev, D.; Gottlieb, J. D.; Mueser, K. T.; Achtyes, E. D.; Gingerich, S.; Marcy, P.; Meyer-Kalos, P.; Hauser, M.; John, M.; Robinson, D. G.; Kane, J. M.

10.1101/626663 — neuroscience — Posted on 2019-05-13

2105 Comparing faster evolving rplB and rpsC versus SSU rRNA for improved microbial community resolution

Guo, J.; Cole, J. R.; Brown, C. T.; Tiedje, J. M.

10.1101/435099 — microbiology — Posted on 2019-05-13

2106 Cell Generation Dynamics Underlying Naïve T Cell Homeostasis in Adult Humans

Mold, J.; Reu, P.; Olin, A.; Bernard, S.; Michaëlsson, J.; Rane, S.; Yates, A.; Khosravi, A.; Salehpour, M.; Possnert, G.; Brodin, P.; Frisen, J.

10.1101/635995 — immunology — Posted on 2019-05-13

2107 Genome-wide associations reveal human-mouse genetic convergence and novel modifiers of myogenesis, CPNE1 and STC2

Hernandez Cordero, A. I.; Gonzales, N. M.; Parker, C. C.; Sokoloff, G.; Vandenbergh, D. J.; Cheng, R.; Abney, M.; Skol, A.; Douglas, A.; Palmer, A. A.; Gregory, J. S.; Lionikas, A.

10.1101/370312 — genetics — Posted on 2019-05-13

2108 Optimised FRET pairs and quantification approaches to detect the activation of Aurora kinase A at mitosis

Bertolin, G.; Sizaire, F.; Demeautis, C.; Chapuis, C.; Merola, F.; Erard, M.; Tramier, M.

10.1101/562603 — cell biology — Posted on 2019-05-13

2109 PerMemDB: a database for eukaryotic peripheral membrane proteins

Nastou, K. C.; Tsaousis, G. N.; Iconomidou, V. A.

10.1101/531541 — bioinformatics — Posted on 2019-05-13

2110 Quantifying the dynamics of hematopoiesis by in vivo IdU pulse-chase, mass cytometry and mathematical modeling

Erez, A.; Mukherjee, R.; Altan-Bonnet, G.

10.1101/552489 — immunology — Posted on 2019-05-13

2111 SimRVSequences: an R package to simulate genetic sequence data for pedigrees

Nieuwoudt, C.; Brooks-Wilson, A.; Graham, J.

10.1101/534552 — genetics — Posted on 2019-05-13

2112 Sustainability of spatially distributed bacteria-phage systems

Eriksen, R. S.; Mitarai, N.; Sneppen, K.

10.1101/495671 — ecology — Posted on 2019-05-13

2113 KymoButler: A deep learning software for automated kymograph analysis

Jakobs, M.; Dimitracopoulos, A.; Franze, K.

10.1101/405183 — cell biology — Posted on 2019-05-13

2114 MLKS2 is an ARM domain and F-actin-associated KASH protein that functions in stomatal complex development and meiotic chromosome segregation.

Gumber, H. K.; McKenna, J. F.; Tolmie, A. F.; Jalovec, A. M.; Kartick, A. C.; Graumann, K.; Bass, H. W.

10.1101/609594 — cell biology — Posted on 2019-05-13

2115 Implicit temporal predictability enhances pitch discrimination sensitivity and biases the phase of delta oscillations in auditory cortex

Herbst, S. K.; Obleser, J.

10.1101/410274 — neuroscience — Posted on 2019-05-13

2116 Maternal pre-pregnant obesity is associated with cord blood metabolomics in a multi-ethnic cohort

Alakwaa, F.; Schlueter, R.; Benny, P.; Gurary, A.; Xie, G.; Jia, W.; Chun, S.; Chern, I.; Garmire, L.

10.1101/264374 — epidemiology — Posted on 2019-05-13

2117 Detection of Parkinson’s disease using blood and brain cells transcript profiles

Moni, M. A.; Rana, H. K.; Islam, M. B.; Ahmed, M. B.; Lio, P.; Hasan, M. A. M.; Huq, F.; Quinn, J.

10.1101/483016 — bioinformatics — Posted on 2019-05-13

2118 Fetal whole-heart 4D flow cine MRI using multiple non-coplanar balanced SSFP stacks

Roberts, T. A.; van Amerom, J. F.; Uus, A.; Lloyd, D. F.; Price, A. N.; Tournier, J.-D.; Jackson, L. H.; Malik, S. J.; van Poppel, M. P.; Pushparajah, K.; Rutherford, M. A.; Rezavi, R.; Deprez, M.; Hajnal, J. V.

10.1101/635797 — bioengineering — Posted on 2019-05-13

2119 Choice history biases subsequent evidence accumulation

Urai, A. E.; de Gee, J. W.; Tsetsos, K.; Donner, T. H.

10.1101/251595 — neuroscience — Posted on 2019-05-13

2120 Background free tracking of single RNA in living cells using catalytically inactive CasE

Han, C.; Gao, F.; Jiang, F.; Bai, X.; Sun, Y.

10.1101/635912 — molecular biology — Posted on 2019-05-13

2121 Metabolic Architecture of the Deep Ocean Microbiome

Acinas, S. G.; Sanchez, P.; Salazar, G.; Cornejo-Castillo, F. M.; Sebastian, M.; Logares, R.; Sunagawa, S.; Hingamp, P.; Ogata, H.; Lima-Mendez, G.; Roux, S.; Gonzalez, J. M.; Arrieta, J. M.; Alam, I. S.; Kamau, A.; Bowler, C.; Raes, J.; Pesant, S.; Bork, P.; Agusti, S.; Gojobori, T.; Bajic, V.; Vaque, D.; Sullivan, M. B.; Pedros-Alio, C.; Massana, R.; Duarte, C. M.; Gasol, J. M.

10.1101/635680 — microbiology — Posted on 2019-05-13

2122 Fatty acid starvation activates RelA by depleting lysine precursor pyruvate

Sinha, A. K.; Winther, K. S.; Roghanian, M.; Gerdes, K.

10.1101/635748 — microbiology — Posted on 2019-05-13

2123 Entecavir resistance mutations rtL180M/T184L/M204V combined with rtA200V lead to tenofovir resistance

Jiang, D.; Wang, J.; Zhao, X.; Li, Y.; Zhang, Q.; Song, C.; Zeng, H.; Wang, X.

10.1101/632984 — microbiology — Posted on 2019-05-13

2124 Integrated Metabolomic and Transcriptomic Profiling Reveals Novel Activation-Induced Metabolic Networks in Human T cells

Hiemer, S. E.; Jatav, S.; Jussif, J.; Alley, J.; Lathwal, S.; Piotrowski, M. A.; Janiszewski, J.; Kibbey, R.; Alves, T.; Dumlao, D.; Jha, A. K.; Bandukwala, H.

10.1101/635789 — immunology — Posted on 2019-05-13

2125 Climate adaptation shaped by subtle to moderate allele frequency shifts in loblolly pine

De La Torre, A. R.; Neale, D. B.

10.1101/635862 — genomics — Posted on 2019-05-13

2126 Scalable dynamic characterization of synthetic gene circuits

Dalchau, N.; Grant, P. K.; Vaidyanathan, P.; Gravill, C.; Spaccasassi, C.; Phillips, A.

10.1101/635672 — synthetic biology — Posted on 2019-05-13

2127 Benchmarking Single-Cell RNA Sequencing Protocols for Cell Atlas Projects

Mereu, E.; Lafzi, A.; Moutinho, C.; Ziegenhain, C.; MacCarthy, D. J.; Alvarez, A.; Batlle, E.; Sagar, ; Grün, D.; Lau, J. K.; Boutet, S.; Sanada, C.; Ooi, A.; Jones, R. C.; Kaihara, K.; Brampton, C.; Talaga, Y.; Sasagawa, Y.; Tanaka, K.; Hayashi, T.; Nikaido, I.; Fischer, C.; Sauer, S.; Trefzer, T.; Conrad, C.; Adiconis, X.; Nguyen, L. T.; Regev, A.; Levin, J. Z.; Janjic, A.; Wange, L. E.; Bagnoli, J. W.; Parekh, S.; Enard, W.; Gut, M.; Sandberg, R.; Gut, I.; Stegle, O.; Heyn, H.

10.1101/630087 — genomics — Posted on 2019-05-13

2128 When 90% of the variance is not enough: residual EMG from muscle synergy extraction influences task performance

Barradas, V. R.; Kutch, J. J.; Kawase, T.; Koike, Y.; Schweighofer, N.

10.1101/634758 — neuroscience — Posted on 2019-05-13

2129 Somatodendritic HCN channels in hippocampal OLM cells revealed by a convergence of computational models and experiments

Sekulic, V.; Lawrence, J.; Guet-McCreight, A.; Yi, F.; Garrett, T.; Wang, R.; Liu, X.; Lopez, Y.; Solis-Wheeler, M.; Skinner, F. K.

10.1101/633941 — neuroscience — Posted on 2019-05-13

2130 Functional analysis of OCTN2 and ATB0,+ in normal human airway epithelial cells

Rotoli, B. M.; Visigalli, R.; Barilli, A.; Ferrari, F.; Bianchi, M. G.; Di Lascia, M.; Riccardi, B.; Puccini, P.; Dall'asta, V.

10.1101/637058 — cell biology — Posted on 2019-05-13

2131 The effect of tongue-tie application on stress responses in resting horses

MARSH, L.; Franklin, S.

10.1101/634717 — animal behavior and cognition — Posted on 2019-05-13

2132 Beyond SNP Heritability: Polygenicity and Discoverability of Phenotypes Estimated with a Univariate Gaussian Mixture Model

Holland, D.; Frei, O.; Desikan, R.; Fan, C.-C.; Shadrin, A. A.; Smeland, O. B.; Sundar, V. S.; Thompson, P.; Andreassen, O. A.; Dale, A. M.

10.1101/133132 — genomics — Posted on 2019-05-13

2133 RNA binding kinase UHMK1 regulates therapy induced metabolic adaptation in BRAFV600 melanoma

Smith, L. K.; Parmenter, T.; Kleinschmidt, M.; Kusnadi, E. P.; Kang, J.; Martin, C. A.; Lau, P.; Ward, T.; Rao, A. D.; Lelliott, E. J.; Sheppard, K. E.; Hicks, R. J.; Tiganis, T.; Simpson, K. J.; Cullinane, C.; Wickramasinghe, V. O.; Pearson, R. B.; McArthur, G. A.

10.1101/626952 — cancer biology — Posted on 2019-05-13

2134 Application of TurboID-mediated proximity labeling for mapping a GSK3 kinase signaling network in Arabidopsis

Kim, T.-W.; Park, C. H.; Hsu, C.-C.; Zhu, J.-Y.; Hsiao, Y.; Branon, T.; Xu, S.-L.; Ting, A. Y.; Wang, Z.-Y.

10.1101/636324 — plant biology — Posted on 2019-05-13

2135 Myosin-II mediated traction forces evoke localized Piezo1 Ca2+ flickers

Ellefsen, K.; Holt, J. R.; Chang, A.; Nourse, J. L.; Arulmoli, J.; Mekhdjian, A.; Abuwarda, H.; Tombola, F.; Flanagan, L. A.; Dunn, A. R.; Parker, I.; Pathak, M. M.

10.1101/294611 — biophysics — Posted on 2019-05-13

2136 Loss of premature stop codon in the Wall-Associated Kinase 91 (OsWAK91) gene confers sheath blight disease resistance in rice

Al-Bader, N.; Meier, A.; Geniza, M.; Gongora, Y. S.; Oard, J.; Jaiswal, P.

10.1101/625509 — plant biology — Posted on 2019-05-13

2137 Permissive Fatty Acid Incorporation in Host Environments Promotes Staphylococcal Adaptation to FASII Antibiotics

Kenanian, G.; Morvan, C.; Weckel, A.; Pathania, A.; Anba-Mondoloni, J.; Halpern, D.; Solgadi, A.; Dupont, L.; Henry, C.; Poyart, C.; Fouet, A.; Lamberet, G.; Gloux, K.; Gruss, A.

10.1101/635698 — microbiology — Posted on 2019-05-13

2138 Peptidoglycan associated cyclic lipopeptide disrupts viral infectivity

Johnson, B. A.; Hage, A.; Kalveram, B.; Mears, M.; Plante, J. A.; Rodriguez, S. E.; Ding, Z.; Luo, X.; Bente, D.; Bradrick, S. S.; Freiberg, A. N.; Popov, V.; Rajsbaum, R.; Rossi, S.; Russell, W. K.; Menachery, V. D.

10.1101/635854 — microbiology — Posted on 2019-05-13

2139 Genetic diversity by ISSR of two endemic quillworts (Isoetes L.) species from Amazon Iron Rocky Outcrops, Isoetes cangae e I. serracarajensis

10.1101/635771 — genetics — Posted on 2019-05-13

2140 Endogenous fluctuations of OCT4 and SOX2 bias pluripotent cell fate decisions

Strebinger, D.; Deluz, C.; Friman, E. T.; Govindan, S.; Alber, A. B.; Suter, D. M.

10.1101/299073 — developmental biology — Posted on 2019-05-13

2141 Defining the root endosphere and rhizosphere microbiomes from the World Olive Germplasm Collection

Fernandez-Gonzalez, A. J.; Villadas, P. J.; Gomez-Lama Cabanas, C.; Valverde-Corredor, A.; Belaj, A.; Mercado-Blanco, J.; Fernandez-Lopez, M.

10.1101/636530 — microbiology — Posted on 2019-05-13

2142 Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank

Coleman, J. R. I.; Peyrot, W. J.; Purves, K. L.; Davis, K. A. S.; Rayner, C.; Choi, S. W.; Hübel, C.; Gaspar, H. A.; Kan, C.; Van der Auwera, S.; Adams, M. J.; Lyall, D. M.; Choi, K.; Major Depressive Disorder Working Group of the Psy, ; Dunn, E. C.; Vassos, E.; Danese, A.; Maughan, B.; Grabe, H. J.; Lewis, C. M.; O'Reilly, P. F.; McIntosh, A. M.; Smith, D. J.; Wray, N. R.; Hotopf, M.; Eley, T. C.; Breen, G.

10.1101/247353 — genomics — Posted on 2019-05-13

2143 HOME: A histogram based machine learning approach for effective identification of differentially methylated regions

Srivastava, A.; Karpievitch, Y. V.; Eichten, S. R.; Borevitz, J. O.; Lister, R.

10.1101/228221 — bioinformatics — Posted on 2019-05-13

2144 Effects of single cage housing on stress, cognitive and seizure parameters in the rat and mouse pilocarpine models of epilepsy

Manouze, H.; Ghestem, A.; Poillerat, V.; Bennis, M.; Ba-M'hamed, S.; Benoliel, J.-J.; Becker, C.; Bernard, C.

10.1101/214528 — neuroscience — Posted on 2019-05-13

2145 Sequencing and comparative analysis of three Chlorella genomes provide insights into strain-specific adaptation to wastewater

Wu, T.; Li, L.; Jiang, X.; Yang, Y.; Song, Y.; Chen, L.; Xu, X.; Shen, Y.; Gu, Y.

10.1101/630145 — genomics — Posted on 2019-05-13

2146 Spectrum: Fast density-aware spectral clustering for single and multi-omic data

John, C. R.; Watson, D.; Barnes, M.; Pitzalis, C.; Lewis, M.

10.1101/636639 — bioinformatics — Posted on 2019-05-13

2147 Pathologies of Between-Groups Principal Components Analysis in Geometric Morphometrics

Bookstein, F. L.

10.1101/627448 — evolutionary biology — Posted on 2019-05-13

2148 Parsimonious transcript data integration improves context-specific predictions of bacterial metabolism in complex environments

Jenior, M. L.; Moutinho, T.; Papin, J. A.

10.1101/637124 — systems biology — Posted on 2019-05-13

2149 Interspecific introgression mediates adaptation to whole genome duplication

Marburger, S.; Monnahan, P.; Seear, P. J.; Martin, S. H.; Koch, J.; Paajanen, P.; Bohutinska, M.; Higgins, J. D.; Schmickl, R.; Yant, L.

10.1101/636019 — evolutionary biology — Posted on 2019-05-13

2150 Unraveling the substrate preference of an uncharacterized phylogenetic subgroup in Formate/Nitrite Transporter (FNT) family: Computational studies of anion transport in Escherichia coli FNT homolog

Mukherjee, M.; Sankararamakrishnan, R.

10.1101/637116 — biophysics — Posted on 2019-05-13

2151 Topological data analysis of vascular disease: A theoreticalframework

Nicponski, J.; Jung, J.-H.

10.1101/637090 — physiology — Posted on 2019-05-13

2152 The impact of leishmaniasis on mental health and psychosocial well-being: A systematic review

Pires, M.; Wright, B.; Kaye, P.; da Conceicao, V.; Churchill, R.

10.1101/637132 — epidemiology — Posted on 2019-05-13

2153 Seasonal influenza: Modelling approaches to capture immunity propagation

Hill, E. M.; Petrou, S.; de Lusignan, S.; Yonova, I.; Keeling, M. J.

10.1101/637074 — epidemiology — Posted on 2019-05-13

2154 Maternal Obesity-Induced Endoplasmic Reticulum Stress Causes Metabolic Alterations and Abnormal Hypothalamic Development in the Offspring

Park, S.; Jang, A.; Bouret, S. G.

10.1101/637066 — physiology — Posted on 2019-05-13

2155 Simple methods to obtain food listing and portion size distribution estimates for use in semi-quantitative dietary assessment methods

Hotz, C.; Lubowa, A.

10.1101/637025 — epidemiology — Posted on 2019-05-13

2156 The mineralization characteristics of organic carbon and particle composition analysis in reconstructed soil with different proportions of soft rock and sand

Guo, Z.; Han, J.; Xu, Y.; Tian, C.; Shi, C.; Ge, L.; Li, J.; Cao, T.

10.1101/636993 — ecology — Posted on 2019-05-13

2157 A structural model of the human serotonin transporter in an outward-occluded state

Hellsberg, E.; Ecker, G. F.; Stary-Weinzinger, A.; Forrest, L. R.

10.1101/637009 — biophysics — Posted on 2019-05-13

2158 In Silico Analysis of Ixodid Tick Aqauporin-1 Protein as a Candidate Anti-Tick Vaccine Antigen

Ndekezi, C.; Nkamwesiga, J.; Ochwo, S.; Kimuda, M. P.; Mwiine, F. N.; Tweyongyere, R.; Amanyire, W.; Muhanguzi, D.

10.1101/636985 — bioinformatics — Posted on 2019-05-13

2159 Motor effort and adaptive sampling in perceptual decision-making

Zhu, T.

10.1101/637017 — animal behavior and cognition — Posted on 2019-05-13

2160 An Open-Hardware sample mounting solution for inverted light-sheet microscopes with large detection objective lenses

Russell, C.; Rees, E. J.

10.1101/636977 — cell biology — Posted on 2019-05-13

2161 PRAM: a novel pooling approach for discovering intergenic transcripts from large-scale RNA sequencing experiments

Liu, P.; Soukup, A. A.; Bresnick, E. H.; Dewey, C. N.; Keles, S.

10.1101/636282 — bioinformatics — Posted on 2019-05-13

2162 Predicting the strength of urban-rural clines in a Mendelian polymorphism along a latitudinal gradient

Santangelo, J. S.; Thompson, K. A.; Cohan, B.; Syed, J.; Ness, R. W.; Johnson, M. T. J.

10.1101/635763 — evolutionary biology — Posted on 2019-05-13

2163 An active inference model of concept learning

Smith, R.; Schwartenbeck, P.; Parr, T.; Friston, K. J.

10.1101/633677 — neuroscience — Posted on 2019-05-13

2164 Determining sufficient sequencing depth in RNA-Seq differential expression studies

Bass, A. J.; Robinson, D. G.; Storey, J. D.

10.1101/635623 — genomics — Posted on 2019-05-13

2165 Stable species boundaries despite ten million years of hybridization in tropical eels

Barth, J. M. I.; Gubili, C.; Matschiner, M.; Torresen, O. K.; Watanabe, S.; Egger, B.; Han, Y.-S.; Feunteun, E.; Sommaruga, R.; Jehle, R.; Schabetsberger, R.

10.1101/635631 — evolutionary biology — Posted on 2019-05-13

2166 FACS-based isolation and RNA extraction of Secondary Cells from the Drosophila male Accessory Gland

IMMARIGEON, C.; KARCH, F.; MAEDA, R. K.

10.1101/630335 — cell biology — Posted on 2019-05-13

2167 A spatial analytics computational and systems biology platform predicts risk of colorectal cancer recurrence and identifies emergent spatial domain networks associated with recurrence

Uttam, S.; Stern, A. M.; Furman, S.; Pullara, F.; Spagnolo, D.; Nguyen, L.; Gough, A. H.; Sevinsky, C.; Ginty, F.; Taylor, D. L.; Chennubhotla, S. C.

10.1101/635730 — cancer biology — Posted on 2019-05-13

2168 Logomaker: beautiful sequence logos in Python

Tareen, A.; Kinney, J. B.

10.1101/635029 — bioinformatics — Posted on 2019-05-13

2169 Antibiotics and food in the American press

Bridier-Nahmias, A.; Badau, E.; Nyvall Collen, P.; Andremont, A.; Arquembourg, J.

10.1101/634337 — scientific communication and education — Posted on 2019-05-13

2170 A longitudinal study on morphogenetic diversity of pathogenic Rhizoctonia solani from sugar beet and dry beans of western Nebraska

Das, S.; Harveson, T. P.; Santra, D. K.; Harveson, R. M.; Nielsen, K. A.

10.1101/635482 — pathology — Posted on 2019-05-13

2171 Omnibus Inverse Normal Transformation Based Association Test Improves Power in Genome-Wide Association Studies of Quantitative Traits

McCaw, Z. R.; Lane, J. M.; Saxena, R.; Redline, S.; Lin, X.

10.1101/635706 — genetics — Posted on 2019-05-13

2172 Girdin: an essential component of pre-replicative complex in human cells

Wu, L.; Hua, Y.; Chang, F.; Kong, D.

10.1101/634626 — biochemistry — Posted on 2019-05-13

2173 Ultrastructure of the axonal periodic scaffold reveals a braid-like organization of actin rings

Vassilopoulos, S.; Gibaud, S.; Jimenez, A.; Caillol, G.; Leterrier, C.

10.1101/636217 — cell biology — Posted on 2019-05-13

2174 Proximity labeling of protein complexes and cell type-specific organellar proteomes in Arabidopsis enabled by TurboID

Mair, A.; Xu, S.; Branon, T. C.; Ting, A. Y.; Bergmann, D. C.

10.1101/629675 — plant biology — Posted on 2019-05-13

2175 Detailed profiles of histone modification in male germ line cells of the young and aged mice

Tatehana, M.; Kimura, R.; Mochizuki, K.; Osumi, N.

10.1101/635961 — developmental biology — Posted on 2019-05-13

2176 Precise tuning of cortical contractility regulates cell shape during cytokinesis

Taneja, N.; Bersi, M. R.; Baillargeon, S.; Fenix, A. M.; Cooper, J. A.; Gama, V.; Merryman, W. D.; Ohi, R.; Burnette, D. T.

10.1101/635615 — cell biology — Posted on 2019-05-13

2177 Non-Uniformity of Projection Distributions Attenuates Resolution in Cryo-EM

Lyumkis, D.; Baldwin, P.

10.1101/635938 — biophysics — Posted on 2019-05-13

2178 Complement- and inflammasome-mediated autoinflammation-paroxysmal nocturnal hemoglobinuria

Hoechsmann, B.; Murakami, Y.; Osato, M.; Knaus, A.; Kawamoto, M.; Inoue, N.; Hirata, T.; Murata, S.; Anliker, M.; Eggerman, T.; Jaeger, M.; Floettmann, R.; Hoellein, A.; Murase, S.; Ueda, Y.; Nishimura, J.-i.; Kanakura, Y.; Kohara, N.; Schrezenmeier, H.; Krawitz, P. M.; Kinoshita, T.

10.1101/635573 — immunology — Posted on 2019-05-13

2179 Structural state recognition facilitates tip tracking of EB1 at growing microtubule ends in cells

Reid, T. A.; Coombes, C.; Mukherjee, S.; Goldblum, R.; White, K.; Parmar, S.; McClellan, M.; Zanic, M.; Courtemanche, N.; Gardner, M. K.

10.1101/636092 — cell biology — Posted on 2019-05-13

2180 Direct visualization of human myosin II force generation using DNA origami-based thick filaments

Fujita, K.; Ohmachi, M.; Ikezaki, K.; Yanagida, T.; Iwaki, M.

10.1101/634287 — biophysics — Posted on 2019-05-13

2181 Adaptive laboratory evolution reveals general and specific chemical tolerance mechanisms and enhances biochemical production

Lennen, R.; Jensen, K.; Mohammed, E. T.; Malla, S.; Börner, R. A.; Chekina, K.; Özdemir, E.; Bonde, I.; Koza, A.; Maury, J.; Pedersen, L. E.; Schöning, L. Y.; Sonnenschein, N.; Palsson, B. O.; Sommer, M. O. A.; Feist, A. M.; Nielsen, A. T.; Herrgard, M.

10.1101/634105 — microbiology — Posted on 2019-05-13

2182 A large-scale resource for tissue-specific CRISPR mutagenesis in Drosophila

Port, F.; Strein, C.; Stricker, M.; Rauscher, B.; Heigwer, F.; Zhou, J.; Beyersdorffer, C.; Frei, J.; Hess, A.; Kern, K.; Malamud, R.; Pavlovic, B.; Radecke, K.; Schmitt, L.; Voos, L.; Valentini, E.; Boutros, M.

10.1101/636076 — genetics — Posted on 2019-05-13

2183 Skeletal muscle stem cell self-renewal and differentiation kinetics revealed by EdU lineage tracing during regeneration

Pawlikowski, B.; Dalla Betta, N.; Elston, T.; Olwin, B. B.

10.1101/627851 — cell biology — Posted on 2019-05-13

2184 A cellular atlas of skeletal muscle regeneration and aging

Pawlikowski, B.; Dalla Betta, N.; Antwine, T.; O'Rourke, R.; Jones, K.; Olwin, B. B.

10.1101/635805 — cell biology — Posted on 2019-05-13

2185 HA Nanocarriers Mediate HepG2 Vaccine Induction of hGM-CSF Gene Antitumor effect study

Gupta, D.; Robert, L.

10.1101/636316 — bioengineering — Posted on 2019-05-13

2186 Enhanced biodegradation of naphthalene by Pseudomonas sp. consortium immobilized in calcium alginate beads

Dutta, K.; Shityakov, S.; Khalifa, I.; Ballav, S.; Jana, D.; Manna, T.; Karmakar, M.; Raul, P.; Guchhait, K. C.; Ghosh, C.

10.1101/631135 — microbiology — Posted on 2019-05-13

2187 Social foraging extends associative odor-food memory expression in fruit flies (Drosophila melanogaster)

Sehdev, A.; Mohammed, Y.; Tafrali, C.; Szyszka, P.

10.1101/636399 — neuroscience — Posted on 2019-05-13

2188 Asymmetry in kinematic generalisation between visual and passive lead-in movements are consistent with a forward model in the sensorimotor system

Howard, I. S.; Franklin, S.; Franklin, D. W.

10.1101/636266 — neuroscience — Posted on 2019-05-13

2189 An early phase of instructive plasticity in visual cortex before the typical onset of sensory experience

Roy, A.; Wang, S.; Meschede-Krasa, B.; Breffle, J.; Van Hooser, S. D.

10.1101/635870 — neuroscience — Posted on 2019-05-13

2190 The Connectivity Index: An Effective Metric for Grading Epileptogenicity

Yan, Q.; Gaspard, N.; Zaveri, H. P.; Blumenfeld, H.; Hirsch, L. J.; Spencer, D. D.; Alkawadri, R.

10.1101/635664 — neuroscience — Posted on 2019-05-12

2191 Increasing objective cardiometabolic burden associated with attenuations in the P3b event-related potential component in older adults

Keage, H.; Feurriegel, D.; Greaves, D.; Tregoweth, E.; Coussens, S.; Smith, A.

10.1101/634873 — neuroscience — Posted on 2019-05-12

2192 The effect of NMDA-R antagonist, MK-801, on Neuronal Mismatch along the Auditory Thalamocortical System

Parras, G. G.; Valdes-Baizabal, C.; Harms, L.; Michie, P.; Malmierca, M. S.

10.1101/636068 — neuroscience — Posted on 2019-05-12

2193 Electrocorticographic dissociation of alpha and beta rhythmic activity in the human sensorimotor system

Stolk, A.; Brinkman, L.; Vansteensel, M. J.; Aarnoutse, E.; Leijten, F. S. S.; Dijkerman, C. H.; Knight, R. T.; de Lange, F. P.; Toni, I.

10.1101/636241 — neuroscience — Posted on 2019-05-12

2194 Parkin deficiency perturbs striatal circuit dynamics

Baaske, M. K.; Kramer, E. R.; Meka, D. P.; Engler, G.; Engel, A. K.; Moll, C. K. E.

10.1101/636142 — neuroscience — Posted on 2019-05-13

2195 TMS-evoked oscillations in human cortical circuits: A search for natural frequencies

Stanfield, C. T.; Wiener, M.

10.1101/614826 — neuroscience — Posted on 2019-05-12

2196 Rats exhibit similar biases in foraging and intertemporal choice tasks

Kane, G. A.; Bornstein, A. M.; Shenhav, A.; Wilson, R. C.; Daw, N. D.; Cohen, J. D.

10.1101/497321 — animal behavior and cognition — Posted on 2019-05-12

2197 Scaling of inertial delays in terrestrial mammals

Mohamed Thangal, S. N.; Donelan, J. M.

10.1101/631846 — neuroscience — Posted on 2019-05-12

2198 Membrane-mediated interactions induce spontaneous filament bundling

Vahid, A.; Dadunashvili, G.; Idema, T.

10.1101/336545 — biophysics — Posted on 2019-05-12

2199 Pan-Cancer Exploration of mRNA Mediated Dysregulated Pathways in the Cancer Genomics Cloud

Linan, M.; Wang, J.; Dinu, V.

10.1101/599225 — bioinformatics — Posted on 2019-05-12

2200 Postdoc X-ray in Europe 2017: work conditions, productivity, institutional support and career outlooks

Ribeiro, M. J.; Fonseca, A.; Moura-Ramos, M.; Costa, M.; Kilteni, K.; Andersen, L. M.; Harber-Aschan, L.; Moscoso, J. A.; Bagchi, S.; European Network of Postdoctoral Associations (ENP,

10.1101/523621 — scientific communication and education — Posted on 2019-05-12

2201 FLASH: A next-generation CRISPR diagnostic for multiplexed detection of antimicrobial resistance sequences

Quan, J.; Langelier, C.; Kuchta, A.; Batson, J.; Teyssier, N.; Lyden, A.; Caldera, S.; McGeever, A.; Dimitrov, B.; King, R.; Wilheim, J.; Murphy, M.; Pesce Ares, L.; Travisano, K. A.; Sit, R.; Amato, R.; Mumbengegwi, D. R.; Smith, J. L.; Bennett, A.; Gosling, R.; Mourani, P. M.; Calfee, C. S.; Neff, N. F.; Chow, E. D.; Kim, P. S.; Greenhouse, B.; DeRisi, J. L.; Crawford, E. D.

10.1101/426338 — microbiology — Posted on 2019-05-12

2202 Reciprocal requirement of Wnt signaling and SKN-1 underlies cryptic intraspecies variation in an ancient embryonic gene regulatory network

Torres Cleuren, Y. N.; Ewe, C. K.; Chipman, K. C.; Mears, E.; Wood, C. G.; Al-Alami, C.; Alcorn, M.; Turner, T. L.; Joshi, P.; Snell, R. G.; Rothman, J.

10.1101/628495 — genetics — Posted on 2019-05-12

2203 Resolving noise-control conflict by gene duplication

Chapal, M.; Mintzer, S.; Brodsky, S.; Carmi, M.; Barkai, N.

10.1101/634741 — evolutionary biology — Posted on 2019-05-12

2204 BIOTIN ATTACHMENT DOMAIN-CONTAINING proteins, inhibitors of ACCase, are regulated by WRINKLED1

Liu, H.; Zhai, Z.; Kuczynski, C.; Keereetaweep, J.; Schwender, J.; Shanklin, J.

10.1101/634550 — plant biology — Posted on 2019-05-12

2205 Conserved pheromone production, response and degradation by Streptococcus mutans

Ricomini Filho, A. P.; Khan, R.; Amdal, H. A.; Petersen, F. C. C.

10.1101/635508 — microbiology — Posted on 2019-05-12

2206 Efficient Multivariate Analysis Algorithms for Longitudinal Genome-wide Association Studies

Ning, C.; Wang, D.; Zhou, L.; Wei, J.; Liu, Y.; Kang, H.; Zhang, S.; Zhou, X.; Xu, S.; Liu, J.-F.

10.1101/394197 — bioinformatics — Posted on 2019-05-12

2207 Multi-model inference of non-random mating from an information theoretic approach

Carvajal-Rodriguez, A.

10.1101/305730 — evolutionary biology — Posted on 2019-05-12

2208 Genome-wide disruption of DNA methylation by 5-aza-2’-deoxycytidine in a parasitoid wasp

Cook, N.; Parker, D. J.; Turner, F.; Tauber, E.; Pannebakker, B. A.; Shuker, D. M.

10.1101/437202 — evolutionary biology — Posted on 2019-05-12

2209 Trait-specific trade-offs prevent niche expansion in two parasites

Lievens, E. J.; Michalakis, Y.; Lenormand, T.

10.1101/621581 — evolutionary biology — Posted on 2019-05-12

2210 Investigating the Inhibitory Aspects of Metformin/Curcumin Co-Treatment through Convergence of In-Silico and In-Vitro Approaches

Afzali, F.; Nayeri, Z.; Minuchehr, Z.; Gardaneh, M.

10.1101/568634 — cancer biology — Posted on 2019-05-12

2211 Recording temporal data onto DNA with minutes resolution

Bhan, N.; Strutz, J.; Glaser, J. I.; Kalhor, R.; Boyden, E.; Church, G. M.; Kording, K. P.; Tyo, K. E. J.

10.1101/634790 — synthetic biology — Posted on 2019-05-12

2212 Revisiting the decay of scientific email addresses

Rodriguez-Esteban, R.; Vishnyakova, D.; Rinaldi, F.

10.1101/633255 — scientific communication and education — Posted on 2019-05-12

2213 Relationship Between Motor Capacity of the Contralesional and Ipsilesional Hand Depends on the Side of Stroke

Varghese, R.; Winstein, C. J.

10.1101/635136 — neuroscience — Posted on 2019-05-12

2214 Genome-Wide Association Study of Resistance to Bean Fly and Population Structure of Market Classes of Common Bean

Ojwang, P. P. O.; Eldridge, T.; Corredor-Moreno, P.; Njung'e, V.

10.1101/633545 — plant biology — Posted on 2019-05-12

2215 Anabolic SIRT4 exerts retrograde control over TORC1 signalling by glutamine sparing in the mitochondria

Kolthur-Seetharam, U.; Shaw, E.; Talwadekar, M.; Mohan, N.; Acharya, A.

10.1101/635565 — physiology — Posted on 2019-05-12

2216 Decrease in within-trial variability contributes to a decrease in across-trial variability of neural firing in the primate cortex during neural computations

Sendhilnathan, N.; Basu, D.; Murthy, A.

10.1101/635532 — neuroscience — Posted on 2019-05-12

2217 4-oxo-2-nonenal Adducts In HDL Are Elevated In Familial Hypercholesterolemia: Identification Of Modified Sites And Functional Consequences

May-Zhang, L. S.; Yermalitsky, V.; Melchior, J. T.; Morris, J.; Tallman, K. A.; Borja, M. S.; Pleasent, T.; Amarnath, V.; Yancey, P. G.; Davidson, W. S.; Linton, M. F.; Davies, S. S.

10.1101/635458 — biochemistry — Posted on 2019-05-12

2218 A Clostridia-rich microbiota contributes to increased excretion of bile acids in diarrhea-predominant irritable bowel syndrome

Zhao, L.; Yang, W.; Chen, Y.; Huang, F.; Lu, L.; Lin, C.; Huang, T.; Ning, Z.; Zhai, L.; Zhong, L. L.; Lam, W.; Yang, Z.; Zhang, X.; Cheng, C.; Han, L.; Qiu, Q.; Shang, X.; Huang, R.; Ren, Z.; Chen, D.; Sun, S.; El-Nezami, H.; Lu, A.; Fang, X.; Jia, W.; Bian, Z.

10.1101/630350 — microbiology — Posted on 2019-05-12

2219 GABAA receptor-mediated currents and hormone mRNAs in cells expressing more than one hormone transcript in intact human pancreatic islets

Korol, S. V.; Jin, Z.; Birnir, B.

10.1101/635144 — cell biology — Posted on 2019-05-12

2220 Comparative analysis of diverse cell states establishes an epigenetic basis for inferring regulatory genes governing cell identity

Shim, W. J.; Sinniah, E.; Xu, J.; Vitrinel, B.; Alexenian, M.; Andreoletti, G.; Shen, S.; Balderson, B.; Peng, G.; Jing, N.; Sun, Y.; Chhabra, Y.; Wang, Y.; Tam, P.; Smith, A.; Piper, M.; Srivastava, D.; Christiaen, L.; Nguyen, Q.; Boden, M.; Palpant, N.

10.1101/635516 — cell biology — Posted on 2019-05-12

2221 A bidirectional network for appetite control in zebrafish

Wee, C. L.; Song, E. Y.; Johnson, R. E.; Ailani, D.; Randlett, O.; Kim, J.; Nikitchenko, M.; Bahl, A.; Ahrens, M.; Kawakami, K.; Engert, F.; Kunes, S.

10.1101/631341 — neuroscience — Posted on 2019-05-12

2222 Conserved pheromone production, response and degradation by Streptococcus mutans

Ricomini Filho, A. P.; Khan, R.; Amdal, H. A.; Petersen, F. C.

10.1101/635508 — microbiology — Posted on 2019-05-12

2223 A simple and sensitive SYBR Gold-based assay to quantify DNA-protein interactions

Schreier, S.; Petla, B. P.; Lin, T.; Chakravarty, S.; Subramanian, S.

10.1101/634816 — plant biology — Posted on 2019-05-11

2224 Weakly supervised classification of aortic valve malformations using unlabeled cardiac MRI sequences

Fries, J. A.; Varma, P.; Chen, V. S.; Xiao, K.; Tejeda, H.; Saha, P.; Dunnmon, J.; Chubb, H.; Maskatia, S.; Fiterau, M.; Delp, S.; Ashley, E.; Re, C.; Priest, J.

10.1101/339630 — bioinformatics — Posted on 2019-05-11

2225 Wheat VRN1, FUL2 and FUL3 play critical and redundant roles in spikelet development and spike determinacy

Li, C.; Lin, H.; Chen, A.; Lau, M.; Jernstedt, J.; Dubcovsky, J.

10.1101/510388 — developmental biology — Posted on 2019-05-11

2226 About samples, giving examples: Optimized Single Molecule Localization Microscopy

Jimenez, A.; Friedl, K.; Leterrier, C.

10.1101/568295 — cell biology — Posted on 2019-05-11

2227 Context-dependent requirement of H3K9 methyltransferase activity during cellular reprogramming to iPSCs

Vidal, S.; Polyzos, A.; Morales Valencia, J.; Wang, H.; Swanzey, E.; Ee, L.-s.; Amlani, B.; Tu, S.; Gong, Y.; Tsirigos, A.; Kim, S.; Apostolou, E.; Stadtfeld, M.

10.1101/634949 — developmental biology — Posted on 2019-05-11

2228 HIPPIE2: a method for fine-scale identification of physically interacting chromatin regions

Kuksa, P. P.; Amlie-Wolf, A.; Hwang, Y.-C.; Valladares, O.; Gregory, B. D.; Wang, L.-S.

10.1101/634006 — bioinformatics — Posted on 2019-05-11

2229 A biophysical model uncovers the size distribution of migrating cell clusters across cancer types

Bocci, F.; Kumar Jolly, M.; Onuchic, J. N.

10.1101/563049 — biophysics — Posted on 2019-05-11

2230 A Bayesian Two-Way Latent Structure Model for Genomic Data Integration Reveals Few Pan-Genomic Cluster Subtypes in a Breast Cancer Cohort

Swanson, D.; Lien, T.; Bergholtz, H.; Sorlie, T.; Frigessi, A.

10.1101/387076 — bioinformatics — Posted on 2019-05-11

2231 A frequent variant in the Japanese population determines quasi-Mendelian inheritance of rare retinal ciliopathy

Nikopoulos, K.; Cisarova, K.; Quinodoz, M.; Koskiniemi-Kuendig, H.; Miyake, N.; Farinelli, P.; Rehman, A. U.; Imran Khan, M.; Prunotto, A.; Akiyama, M.; Kamatani, Y.; Terao, C.; Miya, F.; Ikeda, Y.; Ueno, S.; Fuse, N.; Murakami, A.; Wada, Y.; Terasaki, H.; Sonoda, K.-H.; Ishibashi, T.; Kubo, M.; Cremers, F. P. M.; Kutalik, Z.; Matsumoto, N.; Nishiguchi, K. M.; Nakazawa, T.; Rivolta, C.

10.1101/257634 — genomics — Posted on 2019-05-11

Oliynyk, R. T.

10.1101/349019 — genetics — Posted on 2019-05-11

2233 Exploring the space of human exploration using Entropy Mastermind

Schulz, E.; Bertram, L.; Hofer, M.; Nelson, J. D.

10.1101/540666 — animal behavior and cognition — Posted on 2019-05-11

2234 Real-time contextual feedback for closed-loop control of navigation

Lim, J.; Celikel, T.

10.1101/473108 — neuroscience — Posted on 2019-05-11

2235 Rigorous equations for isothermal titration calorimetry: theoretical and practical consequences

Dumas, P.

10.1101/512780 — biophysics — Posted on 2019-05-11

2236 Taxonomy, ecology and distribution of Juniperus oxycedrus L. group in the Mediterranean Region using morphometric, phytochemical and bioclimatic approaches.

Cano-Ortiz, A.; Musarella, C. M.; Pinar Fuentes, J. C.; Pinto Gomes, C. J.; Spampinato, G.; Cano, E.

10.1101/459651 — plant biology — Posted on 2019-05-11

2237 Geometric state-space of protein-induced spontaneous curvature on helicoidal ramps in organelle membranes

Chabanon, M.; Rangamani, P.

10.1101/635466 — biophysics — Posted on 2019-05-11

2238 A Four Electrode Method to Study Dynamics of Ion Activity and Transport in Skeletal Muscle Fibers

Heiny, J. A.; Cannon, S. C.; DiFranco, M. C.

10.1101/635490 — physiology — Posted on 2019-05-11

2239 A platform for semi-automated voluntary training of common marmosets for behavioral neuroscience

Walker, J. D.; Pirschel, F.; Gidmark, N.; MacLean, J. N.; Hatsopouolos, N. G.

10.1101/635334 — neuroscience — Posted on 2019-05-11

2240 Recurrent interactions can explain the variance in single trial responses

Kotekal, S.; MacLean, J. N.

10.1101/635359 — neuroscience — Posted on 2019-05-11

2241 Chromosome-level de novo assembly of the pig-tailed macaque genome using linked-read sequencing and HiC proximity scaffolding

Roodgar, M.; Babveyh, A.; Huong, L.; Zhou, W.; Sinha, R.; Lee, H.; Hanks, J. B.; Avula, M.; Jiang, L.; Lee, H.; Song, G.; Chaib, H.; Weissman, I.; Batzoglou, S.; Holmes, S.; Smith, D. G.; Mankowski, J. L.; Prost, S.; Snyder, M. P.

10.1101/635045 — genomics — Posted on 2019-05-11

2242 Population selection and sequencing of C. elegans wild isolates identifies a region on chromosome III affecting starvation resistance

Webster, A. K.; Hung, A.; Moore, B. T.; Guzman, R.; Jordan, J. M.; Kaplan, R. E. W.; Hibshman, J. D.; Tanny, R. E.; Cook, D. E.; Andersen, E. C.; Baugh, L. R.

10.1101/635417 — genetics — Posted on 2019-05-11

2243 Pan-Cancer Study Detects Novel Genetic Risk Variants and Shared Genetic Basis in Two Large Cohorts

Rashkin, S. R.; Graff, R. E.; Kachuri, L.; Thai, K. K.; Alexeeff, S. E.; Blatchins, M. A.; Cavazos, T.; Corley, D. A.; Emami, N. C.; Hoffman, J. D.; Jorgenson, E.; Kushi, L. H.; Meyers, T. J.; Van Den Eeden, S. K.; Ziv, E.; Habel, L. A.; Hoffmann, T. J.; Sakoda, L. C.; Witte, J. S.

10.1101/635367 — genetics — Posted on 2019-05-11

2244 Immune-mediated genetic pathways resulting in pulmonary function impairment increase lung cancer susceptibility

Kachuri, L.; Johansson, M.; Rashkin, S. R.; Graff, R. E.; Bosse, Y.; Manem, V.; Caporaso, N. E.; Landi, M. T.; Christiani, D. C.; Vineis, P.; Liu, G.; Scelo, G.; Zaridze, D.; Shete, S. S.; Albanes, D.; Aldrich, M. C.; Tardon, A.; Rennert, G.; Chen, C.; Goodman, G. E.; Doherty, J. A.; Bickeboller, H.; Field, J. K.; Davies, M. P.; Teare, M. D.; Kiemeney, L. A.; Bojesen, S. E.; Haugen, A.; Zienolddiny, S.; Lam, S.; Le Marchand, L.; Cheng, I.; Schabath, M. B.; Duell, E. J.; Andrew, A. S.; Manjer, J.; Lazarus, P.; Arnold, S.; McKay, J. D.; Emami, N. C.; Warkentin, M. T.; Brhane, Y.; Obeidat, M.; Ma

10.1101/635318 — genetics — Posted on 2019-05-11

2245 Cross-species blastocyst chimerism between nonhuman primates using iPSCs

Roodgar, M.; Suchy, F. P.; Bajpai, V. K.; Bhadury, J.; Vilches-Moure, J. G.; Oikonomopoulos, A.; Wu, J. C.; Mankowski, J. L.; Loh, K. M.; Nakauchi, H.; VandeVoort, C.; Snyder, M. P.

10.1101/635250 — developmental biology — Posted on 2019-05-11

2246 Atomistic modeling towards predictive cardiotoxicity

DeMarco, K. R.; Dawson, J. R. D.; Yang, P.-C.; Bekker, S.; Ngo, V. A.; Noskov, S. Y.; Yarov-Yarovoy, V.; Clancy, C. E.; Vorobyov, I.

10.1101/635441 — biophysics — Posted on 2019-05-11

2247 MCC950/CRID3 potently targets the NACHT domain of wildtype NLRP3 but not disease-associated mutants for inflammasome inhibition

Vande Walle, L.; Stowe, I. B.; Sacha, P.; Lee, B. L.; Demon, D.; Fossoul, A.; Van Hauwermeiren, F.; Saavedra, P. H. V.; Simon, P.; Subrt, V.; Kostka, L.; Stivala, C. E.; Pham, V. C.; Staben, S. T.; Yamazoe, S.; Konvalinka, J.; Kayagaki, N.; Lamkanfi, M.

10.1101/634493 — immunology — Posted on 2019-05-11

2248 Genetic homogeneity in face of morphological heterogeneity in the harbor porpoises from the Black Sea and adjacent waters

Ben Chehida, Y.; Thumloup, J.; Vishnyakova, K.; Gol'din, P.; Fontaine, M. C.

10.1101/634329 — evolutionary biology — Posted on 2019-05-11

2249 Dysregulated Alternative Splicing Landscape Identifies Intron Retention as a Hallmark and Spliceosome as a Therapeutic Vulnerability in Aggressive Prostate Cancer

Zhang, D.; Hu, Q.; Ji, Y.; Chao, H.-P.; Tracz, A.; Kirk, J.; Buonamici, S.; Zhu, P.; Wang, J.; Liu, S.; Tang, D. G.

10.1101/634402 — cancer biology — Posted on 2019-05-11

2250 Lethal mutagenesis of Rift Valley fever virus induced by favipiravir

Borrego, B.; de Avila, A. I.; Domingo, E.; Brun, A.

10.1101/601344 — microbiology — Posted on 2019-05-11

2251 Genes and the species concept - How much of the genomes can be exchanged?

Wang, X.; Guo, Z.; Xu, S.; Yang, M.; Chen, Q.; Li, S.; Zhong, C.; Duke, N. C.; He, Z.; Wu, C.-I.; Shi, S.

10.1101/622019 — evolutionary biology — Posted on 2019-05-11

2252 MicroRNA Dynamics and Functions During Arabidopsis Embryogenesis

Plotnikova, A.; Kellner, M. J.; Mosiolek, M.; Schon, M. A.; Nodine, M. D.

10.1101/633735 — developmental biology — Posted on 2019-05-11

2253 Cholesterol deprivation induces TGFβ signaling to promote basal differentiation in pancreatic cancer

Cornell, L. G.; Peri, S.; Restifo, D.; Klochkova, A.; Hartman, T. R.; O'Reilly, A. M.; Francescone, R.; Franco-Barraza, J.; Shah, N.; Nicolas, E.; Handorf, E. A.; Cai, K. Q.; Mazitova, A.; Sloma, I.; Chiaverelli, R.; Moffitt, R.; Golemis, E. A.; Cukierman, E.; Astsaturov, I.

10.1101/633719 — cancer biology — Posted on 2019-05-11

2254 CROSSalive: a web server for predicting the in vivo structure of RNA molecules

Delli Ponti, R.; Armaos, A.; Tartaglia, G. G.

10.1101/626085 — bioinformatics — Posted on 2019-05-11

2255 The Evolutionary Dynamics of Cooperation in Collective Search

Novaes Tump, A.; Wu, C. M.; Bouhlel, I.; Goldstone, R. L.

10.1101/538447 — animal behavior and cognition — Posted on 2019-05-11

2256 Multiomic definition of generalizable endotypes in human acute pancreatitis

Neyton, L.; Zheng, X.; Skouras, C.; Wilson, A. B.; Gutmann, M. U.; Yau, C.; Uings, I. J.; Rao, F. V.; Nicolas, A.; Marshall, C.; Wilson, L.-M.; Baillie, J. K.; Mole, D. J.

10.1101/539569 — systems biology — Posted on 2019-05-11

2257 Brain meta-state transitions demarcate spontaneous thoughts in movie-viewing and resting cognition

Tseng, J.; Poppenk, J.

10.1101/576298 — neuroscience — Posted on 2019-05-11

2258 Native molecule sequencing by nano-ID reveals synthesis and stability of RNA isoforms

Maier, K. C.; Gressel, S.; Cramer, P.; Schwalb, B.

10.1101/601856 — molecular biology — Posted on 2019-05-11

2259 Intra-individual changes in the frequency of mosaic loss of chromosome Y over time estimated with a new method

Danielsson, M.; Halvardson, J.; Davies, H.; Torabi Moghadam, B.; Mattisson, J.; Rychlicka-Buniowska, E.; Jaszczynski, J.; Heintz, J.; Lannfelt, L.; Giedraitis, V.; Ingelsson, M.; Dumanski, J. P.; Forsberg, L. A.

10.1101/631713 — genetics — Posted on 2019-05-11

2260 A bird’s white-eye view on neo-sex chromosome evolution

Leroy, T.; Anselmetti, Y.; Tilak, M.-K.; Berard, S.; Csukonyi, L.; Gabrielli, M.; Scornavacca, C.; Mila, B.; Thebaud, C.; Nabholz, B.

10.1101/505610 — evolutionary biology — Posted on 2019-05-11

2261 HIPPIE2: a method for fine-scale identification of physically interacting chromatin regions

Kuksa, P. P.; Amlie-Wolf, A.; Hwang, Y.-C.; Valladares, O.; Gregory, B. D.; Wang, L.-S.

10.1101/634006 — bioinformatics — Posted on 2019-05-11

2262 Single mRNP analysis by super-resolution microscopy and fluorescence correlation spectroscopy reveals that small mRNP granules represent mRNA singletons

Mateu-Regue, A.; Christiansen, J.; Bagger, F. O.; Hellriegel, C.; Nielsen, F. C.

10.1101/558098 — molecular biology — Posted on 2019-05-11

2263 KLF4 protein stability regulated by interaction with pluripotency transcription factors overrides transcriptional control

Dhaliwal, N. K.; Abatti, L. E.; Mitchell, J. A.

10.1101/522680 — developmental biology — Posted on 2019-05-11

2264 Expanding the Zebrafish Genetic Code through Site-Specific Introduction of Diazirine-lysine, Bicyclononyne-lysine and Azido-lysine

Syed, J.; Palani, S.; Clarke, S. T.; Asad, Z.; Bottrill, A. R.; Jones, A. M.; Sampath, K.; Balasubramanian, M. K.

10.1101/631432 — synthetic biology — Posted on 2019-05-10

2265 Queen honey bees combat heat stress-induced loss of stored sperm viability with ATP-independent heat shock proteins

McAfee, A.; Higo, H.; Underwood, R. M.; Milone, J. P.; Foster, L. J.; Guarna, M. M.; Tarpy, D. R.; Pettis, J. S.

10.1101/627729 — physiology — Posted on 2019-05-10

2266 An image-computable model for the stimulus selectivity of gamma oscillations

Hermes, D.; Petridou, N.; Kay, K.; Winawer, J.

10.1101/583567 — neuroscience — Posted on 2019-05-11

2267 Structural and Functional Characterization of G Protein-Coupled Receptors with Deep Mutational Scanning

Jones, E. M.; Lubock, N. B.; Venkatakrishnan, A.; Wang, J.; Tseng, A. M.; Paggi, J. M.; Latorraca, N. R.; Cancilla, D.; Satyadi, M.; Davis, J.; Mohan, M. B.; Dror, R. O.; Kosuri, S.

10.1101/623108 — molecular biology — Posted on 2019-05-10

2268 A survey of vaccine-induced measles IgG antibody titer and the verification of changes in temporal differences of measles vaccination in young adults

Sasaki, H.; Fukunaga, T.; Asano, A.; Suzuki, Y.; Nakanishi, Y.; Kondo, J.; Ishikawa, H.; Shibata, N.

10.1101/622613 — microbiology — Posted on 2019-05-10

2269 The orchestration of subcellular alpha-synuclein pathology in the Parkinson’s disease brain revealed by STED microscopy

Moors, T. E.; Maat, C. A.; Niedieker, D.; Mona, D.; Petersen, D.; Timmermans-Huisman, E.; Kole, J.; El-Mashtoly, S. F.; Spycher, L.; Zago, W.; Barbour, R.; Mundigl, O.; Kaluza, K.; Huber, S.; Hug, M. N.; Kremer, T.; Ritter, M.; Dziadek, S.; Geurts, J. J. G.; Gerwert, K.; Britschgi, M.; van de Berg, W. D. J.

10.1101/470476 — neuroscience — Posted on 2019-05-10

2270 The Importance of Anti-Correlations in Graph Theory Based Classification of Autism Spectrum Disorder

Kazeminejad, A.; Sotero, R. C.

10.1101/557512 — neuroscience — Posted on 2019-05-10

2271 Feature-Specific Neural Reactivation during Episodic Memory

Bone, M. B.; Ahmad, F.; Buchsbaum, B. R.

10.1101/622837 — neuroscience — Posted on 2019-05-10

2272 Resting Eyes Closed Beta-Phase High Gamma-Amplitude Coupling Deficits in Children with Attention Deficit Hyperactivity Disorder

Ibanez-Soria, D.; Kroupi, E.; Rojas, A.; Castellano, M.; Picardo, J.; Garcia Banda, G.; Saez, B.; Servera, M.; Ruffini, G.; Soria-Frisch, A.

10.1101/598003 — neuroscience — Posted on 2019-05-10

2273 Rapid, ultra-local adaptation facilitated by phenotypic plasticity

Sun, S.-J.; Catherall, A.; Pascoal, S.; Jarrett, B.; Miller, S.; Sheehan, M.; Kilner, R.

10.1101/598292 — evolutionary biology — Posted on 2019-05-10

2274 Distinct cancer-associated fibroblast states drive clinical outcomes in high-grade serous ovarian cancer and are regulated by TCF21

Hussain, A.; Voisin, V.; Poon, S.; Dmytryshyn, J.; Richman, C.; Meens, J.; Ho, V. W.; Tang, K. H.; Paterson, J.; Clarke, B.; Bernardini, M.; Bader, G.; Neel, B.; Ailles, L.

10.1101/519728 — cancer biology — Posted on 2019-05-10

2275 Network-based approaches elucidate differences within APOBEC and clock-like signatures in breast cancer

Kim, Y.-A.; Wojtowicz, D.; Sarto Basso, R.; Sason, I.; Robinson, W.; Hochbaum, D. S.; Leiserson, M. D. M.; Sharan, R.; Vandin, F.; Przytycka, T. M.

10.1101/568568 — bioinformatics — Posted on 2019-05-10

2276 Reevaluation of the RNA binding properties of the Tetrahymena thermophila telomerase reverse transcriptase N-terminal domain

Palka, C.; Deshpande, A. P.; Stone, M. D.; Collins, K.

10.1101/621573 — biochemistry — Posted on 2019-05-10

2277 Trajectory of brain maturation in young individuals at familial risk of mood disorder

de Nooij, L.; Harris, M. A.; Hawkins, E. L.; Shen, X.; Clarke, T.-K.; Chan, S. W. Y.; Ziermans, T. B.; McIntosh, A. M.; Whalley, H. C.

10.1101/537951 — neuroscience — Posted on 2019-05-10

2278 Measuring shared responses across subjects using intersubject correlation

Nastase, S. A.; Gazzola, V.; Hasson, U.; Keysers, C.

10.1101/600114 — neuroscience — Posted on 2019-05-10

2279 Feasibility of Topological Data Analysis for event-related fMRI

Ellis, C. T.; Lesnick, M.; Henselman-Petrusek, G.; Keller, B.; Cohen, J. D.

10.1101/457747 — neuroscience — Posted on 2019-05-10

2280 Transcriptomic changes resulting from STK32B overexpression identifies pathways potentially relevant to essential tremor

Liao, C.; Sarayloo, F.; Vuokila, V.; Rochefort, D.; Akcimen, F.; Diamond, S.; Laporte, A. D.; Spiegelman, D.; He, Q.; Catoire, H.; Dion, P. A.; Rouleau, G. A.

10.1101/552901 — genomics — Posted on 2019-05-10

2281 Thermal regimes, but not mean temperatures, drive patterns of rapid climate adaptation at a continent-scale: evidence from the introduced European earwig across North America

Tourneur, J.-C.; Meunier, J.

10.1101/550319 — evolutionary biology — Posted on 2019-05-10

2282 Collateral development and arteriogenesis in hindlimbs of domestic swine after ligation of arterial inflow

Gao, Y.; Patel, N. S.; Aravind, S.; Fugelstad, M.; Casale, G.; Pipinos, I. I.; Carlson, M. A.

10.1101/491928 — physiology — Posted on 2019-05-10

2283 Ketamine Affects Prediction Errors About Statistical Regularities: A Computational Single-Trial Analysis of the Mismatch Negativity

Weber, L.; Diaconescu, A. O.; Mathys, C.; Schmidt, A.; Kometer, M.; Vollenweider, F.; Stephan, K. E.

10.1101/528372 — neuroscience — Posted on 2019-05-10

2284 Reshuffling yeast chromosomes with CRISPR/Cas9

Fleiss, A.; O'Donnell, S.; Fournier, T.; Agier, N.; Delmas, S.; Schacherer, J.; Fischer, G.

10.1101/415349 — genomics — Posted on 2019-05-10

2285 Generalization as diffusion: human function learning on graphs

Wu, C. M.; Schulz, E.; Gershman, S. J.

10.1101/538934 — animal behavior and cognition — Posted on 2019-05-10

2286 Spontaneously emerging cortical representations of visual objects and features in human visual cortex

Kim, D.; Livne, T.; Metcalf, N.; Corbetta, M.; Shulman, G. L.

10.1101/518712 — neuroscience — Posted on 2019-05-10

2287 Inferring putative transmission clusters with Phydelity

Han, A.; Parker, E.; Maurer-Stroh, S.; Russell, C.

10.1101/477653 — bioinformatics — Posted on 2019-05-10

2288 Frequency-specific brain dynamics related to prediction during language comprehension

Armeni, K.; Willems, R. M.; van den Bosch, A.; Schoffelen, J.-M.

10.1101/399733 — neuroscience — Posted on 2019-05-10

2289 Immediate inhibition of sucrose uptake in Corynebacterium glutamicum in response to intracellular glucose-6-phosphate accumulation requires the ptsG encoded EII-permease

Petrov, D. P.; Goldbeck, O.; Kraemer, R.; Seibold, G. M.

10.1101/634246 — microbiology — Posted on 2019-05-10

2290 Modeling the growth of organisms validates a general relation between metabolic costs and natural selection

Ilker, E.; Hinczewski, M.

10.1101/358440 — evolutionary biology — Posted on 2019-05-10

2291 Assessment Of Genetic Structure Of The Endangered Forest Species Boswellia Serrata Roxb. Population In Central India

Vaishnav, V.; Mahesh, S.; Kumar, P.

10.1101/412874 — plant biology — Posted on 2019-05-10

2292 Improving short and long term genetic gain by accounting for within family variance in optimal cross selection

Allier, A.; Lehermeier, C.; Charcosset, A.; Moreau, L.; Teyssedre, S.

10.1101/634303 — genetics — Posted on 2019-05-10

2293 Population genomics supports clonal reproduction and multiple gains and losses of parasitic abilities in the most devastating nematode plant pest

Koutsovoulos, G.; Marques, E.; Arguel, M.-J.; Duret, L.; Machado, A. C.; Carneiro, R. M.; Kozlowski, D. K.; Bailly-Bechet, M.; Castagnone-Sereno, P.; Danchin, E. G.; Albuquerque, E. V.

10.1101/362129 — evolutionary biology — Posted on 2019-05-10

2294 NRF2 activates a partial Epithelial-Mesenchymal Transition and is maximally present in a hybrid Epithelial/Mesenchymal phenotype

Bocci, F.; Tripathi, S. C.; Vilchez Mercedes, S.; George, J. T.; Casabar, J.; Wong, P. K.; Hanash, S.; Levine, H.; Onuchic, J. N.; Jolly, M. K.

10.1101/390237 — cancer biology — Posted on 2019-05-10

2295 Dendritic spine geometry and spine apparatus organization govern the spatiotemporal dynamics of calcium

Bell, M.; Bartol, T.; Sejnowski, T.; Rangamani, P.

10.1101/386367 — systems biology — Posted on 2019-05-10

2296 Why high yield QTLs did not succeed in preventing yield stagnation in rice?

Xiong, D.

10.1101/634196 — plant biology — Posted on 2019-05-10

2297 Oxygen Restriction Generates Difficult-To-Culture Pathogens

Kvich, L.; Fritz, B.; Crone, S. G.; Kragh, K. N.; Kolpen, M.; Soenderholm, M.; Andersson, M.; Koch, A.; Jensen, P. O.; Bjarnsholt, T.

10.1101/339747 — microbiology — Posted on 2019-05-10

2298 A systematic survey of regional multitaxon biodiversity: evaluating strategies and coverage

Brunbjerg, A. K.; Bruun, H. H.; Broendum, L.; Classen, A. T.; Dalby, L.; Fog, K.; Froeslev, T. G.; Goldberg, I.; Hansen, A. J.; Hansen, M. D. D.; Hoeye, T. T.; Illum, A. A.; Laessoee, T.; Newman, G.; Skipper, L.; Soechting, U.; Ejrnaes, R.

10.1101/158030 — ecology — Posted on 2019-05-10

2299 Fast and accurate bacterial species identification in biological samples using LC-MS/MS mass spectrometry and machine learning

Roux-Dalvai, F.; Gotti, C.; Leclercq, M.; Helie, M.-C.; Boissinot, M.; Arrey, T. N.; Dauly, C.; Fournier, F.; Kelly, I.; Marcoux, J.; Bestman-Smith, J.; Bergeron, M. G.; Droit, A.

10.1101/635227 — microbiology — Posted on 2019-05-10

2300 Mesenchymal expression of activated K-ras yields Noonan Syndrome-like bone defects that are rescued by mid-gestational MEK inhibition.

Nedelcu, S.; Kobayashi, T.; Stanciu, M.; Kronenberg, H. M.; Lees, J. A.

10.1101/634840 — developmental biology — Posted on 2019-05-10

2301 CLN3 regulates endosomal function by modulating Rab7A activity

Yasa, S.; Modica, G.; Sauvageau, E.; Kaleem, A.; Hermey, G.; Lefrancois, S.

10.1101/634915 — cell biology — Posted on 2019-05-10

2302 A role for peripheral GDNF signaling in ischemic myalgia development

Queme, L. F.; Weyler, A. A.; Cohen, E. R.; Hudgins, R. C.; Jankowski, M. P.

10.1101/627521 — neuroscience — Posted on 2019-05-10

2303 The discrete logic of the Brain - Explicit modelling of Brain State durations in EEG and MEG

Trujillo-Barreto, N. J.; Araya, D.; El-Deredy, W.

10.1101/635300 — neuroscience — Posted on 2019-05-10

2304 Global ecotypes in the ubiquitous marine clade SAR86

Hoarfrost, A.; Nayfach, S.; Ladau, J.; Yooseph, S.; Arnosti, C.; Dupont, C. L.; Pollard, K.

10.1101/635185 — ecology — Posted on 2019-05-10

2305 Mice tune out not in: Violation of prediction drives auditory saliency

Rogalla, M. M.; Rauser, I.; Schulze, K.; Osterhagen, L.; Hildebrandt, K. J.

10.1101/633388 — animal behavior and cognition — Posted on 2019-05-10

2306 A new clinical tool to predict outcome in early-stage melanoma patients

Mancuso, F.; Lage, S.; Rasero, J.; Diaz-Ramon, J. L.; Apraiz, A.; Perez-Yarza, G.; Ezkurra, P.; Penas, C.; Sanchez-Diez, A.; Garcia-Vazquez, M. D.; Gardeazabal, J.; Izu, R.; Mujika, K.; Cortes, J.; Asumendi, A.; Boyano, M. D.

10.1101/632455 — pathology — Posted on 2019-05-10

Pardo, J. V.; Nyabwari, S. M.; Lee, J. T.; ADNI,

10.1101/635219 — neuroscience — Posted on 2019-05-10

2308 A nemertean excitatory peptide/CCHamide regulates ciliary swimming in the larvae of Lineus longissimus

Thiel, D.; Bauknecht, P.; Jekely, G.; Hejnol, A.

10.1101/634543 — neuroscience — Posted on 2019-05-10

2309 Comparison of Vitek(R) 2, three different gradient strip tests and broth microdilution for detecting vanB-positive Enterococcus faecium isolates with low vancomycin MICs

Klare, I.; Bender, J.; Fleige, C.; Kriebel, N.; Hamprecht, A.; Gatermann, S.; Werner, G.

10.1101/634535 — microbiology — Posted on 2019-05-10

2310 Microbially induced calcite precipitation using Bacillus velezensis with guar gum

Dikshit, R.; Jain, A.; Dey, A.; Kamilya, S.; Mondal, A.; Kumar, A.

10.1101/634212 — microbiology — Posted on 2019-05-10

2311 Proteome-by-phenome Mendelian Randomisation detects 38 proteins with causal roles in human diseases and traits

Bretherick, A. D.; Canela-Xandri, O.; Joshi, P. K.; Clark, D. W.; Rawlik, K.; Boutin, T. S.; Zeng, Y.; Amador, C.; Navarro, P.; Rudan, I.; Wright, A. F.; Campbell, H.; Vitart, V.; Hayward, C.; Wilson, J. F.; Tenesa, A.; Ponting, C. P.; Baillie, J. K.; Haley, C.

10.1101/631747 — genomics — Posted on 2019-05-10

2312 Predicting functional long non-coding RNAs validated by low throughput experiments

Zhou, B.; Yang, Y.; Zhan, J.; Dou, X.; Wang, J.; Zhou, Y.

10.1101/634345 — bioinformatics — Posted on 2019-05-10

2313 TBK1-mediated phosphorylation of LC3C and GABARAP-L2 controls autophagosome shedding by ATG4 protease

Herhaus, L.; Bhaskara, R. M.; Lystad, A. H.; Simonsen, A.; Hummer, G.; Dikic, I.

10.1101/634519 — biochemistry — Posted on 2019-05-10

2314 BIOTIN ATTACHMENT DOMAIN-CONTAINING proteins, inhibitors of ACCase, are regulated by WRINKLED1

Liu, H.; Zhai, Z.; Kuczynski, C.; Keereetaweep, J.; Schwender, J.; Shanklin, J.

10.1101/634550 — plant biology — Posted on 2019-05-10

2315 Cullin-5 adaptor SPSB1 controls NF-κB activation downstream of multiple signalling pathways

Georgana, I.; Maaluquer de Motes, C.

10.1101/634881 — molecular biology — Posted on 2019-05-10

2316 Paragraph: A graph-based structural variant genotyper for short-read sequence data

Chen, S.; Krusche, P.; Dolzhenko, E.; Sherman, R. M.; Petrovski, R.; Schlesinger, F.; Kirsche, M.; Bentley, D. R.; Schatz, M. S.; Sedlazeck, F. J.; Eberle, M. A.

10.1101/635011 — genomics — Posted on 2019-05-10

2317 Mixed support for the idea that lower elevation animals are better competitors than their upper elevation relatives

Freeman, B.

10.1101/634964 — ecology — Posted on 2019-05-10

2318 Modeling of SF3B1 cancer-related missense mutations in C. elegans uncovers targets for synthetic lethal interactions

Serrat, X.; Kukhtar, D.; Cornes, E.; Esteve-Codina, A.; Benlloch, H.; Cecere, G.; Ceron, J.

10.1101/634634 — cancer biology — Posted on 2019-05-10

2319 Assessing nasal obstruction with the nasal acoustic device: a pilot study on distinguishing between subjects with and without chronic rhinosinusitis

Li, C.-H.; Tan, C.; Whitcroft, K.; Andrews, P.; Leung, T.

10.1101/631499 — bioengineering — Posted on 2019-05-10

2320 A simple and sensitive SYBR Gold-based assay to quantify DNA-protein interactions

Schreier, S.; Petla, B. P.; Lin, T.; Chakravarty, S.; Subramanian, S.

10.1101/634816 — plant biology — Posted on 2019-05-10

2321 Cell numbers, distribution, shape, and regional variation throughout the murine hippocampal formation from the adult brain Allen Reference Atlas

Attili, S. M.; Silva, M.; Nguyen, T.-V.; Ascoli, G.

10.1101/635201 — neuroscience — Posted on 2019-05-10

2322 Frontal theta and beta oscillations during lower-limb movement in Parkinson’s disease

Singh, A.; Cole, R. C.; Espinoza, A. I.; Brown, D. R.; Cavanagh, J. F.; Narayanan, N.

10.1101/634808 — neuroscience — Posted on 2019-05-10

2323 Real-time, MinION-based, amplicon sequencing for lineage typing of infectious bronchitis virus from upper respiratory samples

Butt, S. L.; Erwood, E. C.; Zhang, J.; Sellers, H. S.; Young, K.; Lahmers, K. K.; Stanton, J. B.

10.1101/634600 — microbiology — Posted on 2019-05-10

2324 Acute phase protein, α-1-acid glycoprotein (AGP-1), has differential effects on TLR-2 and TLR-4 mediated responses.

Mosale, S. S.; Abhilasha, K. V.; Jacob, S. P.; Chaithra, V. H.; Basrur, V.; Willard, B.; McIntyre, T. M.; Prabhu, K. S.; Marathe, G. K.

10.1101/634295 — immunology — Posted on 2019-05-10

2325 Improved assembly and variant detection of a haploid human genome using single-molecule, high-fidelity long reads

Vollger, M. R.; Logsdon, G. A.; Audano, P. A.; Sulovari, A.; Porubsky, D.; Peluso, P.; Concepcion, G. T.; Munson, K. M.; Baker, C.; Sanders, A. D.; Spierings, D. C. J.; Lansdorp, P. M.; Hunkapiller, M. W.; Eichler, E. E.

10.1101/635037 — genomics — Posted on 2019-05-10

2326 Fine-scale haplotype structure reveals strong signatures of positive selection in a recombining bacterial pathogen

Arnold, B. J.; Sohail, M.; Wadsworth, C.; Corander, J.; Hanage, W. P.; Sunyaev, S.; Grad, Y.

10.1101/634147 — evolutionary biology — Posted on 2019-05-10

2327 Impact of maternal malnutrition on gut barrier defence: implications for pregnancy health and fetal development.

Srugo, S. A.; Bloise, E.; Nguyen, T. T.-T. N.; Connor, K. L.

10.1101/635052 — developmental biology — Posted on 2019-05-10

2328 CLASP2 lattice-binding near microtubule plus ends stabilizes kinetochore attachments

Maiato, H.; Girao, H.; Okada, N.; Figueiredo, A. C.; Garcia, Z.; Moutinho-Santos, T.; Azevedo, J.; Macedo-Ribeiro, S.; Hayashi, I.

10.1101/634907 — cell biology — Posted on 2019-05-10

2329 Novel cytokinetic ring components limit RhoA activity and contractility

Rehain-Bell, K.; Werner, M. E.; Doshi, A.; Cortes, D. B.; Sattler, A.; Vuong-Brender, T. T.; Labouesse, M.; Maddox, A. S.

10.1101/633743 — cell biology — Posted on 2019-05-10

2330 VE-PTP participates in vasculogenic mimicry by preventing autophagic degradation of VE-cadherin

Oliver, J.; Delgado-Bellido, D.; Garcia-Diaz, A.; Bueno-Galera, C.

10.1101/634584 — cancer biology — Posted on 2019-05-10

2331 AML ImmunoPET: 64Cu-DOTA-anti-CD33 PET-CT imaging of AML in Xenograft mouse model

Madabushi, S. S.; Brooks, J. L.; Zuro, D.; Kumar, B.; Sanchez, J.; Echavarria Parra, L.; Orellana, M.; Vishwasrao, P.; Nair, I.; Chea, J.; Poku, K.; Bowles, N.; Miller, A.; Ebner, T.; Molnar, J.; Rosenthal, J.; Vallera, D. A.; Wong, J. Y. C.; Stein, A. S.; Colcher, D.; Shively, J.; Yazaki, P.; Hui, S. K.

10.1101/635078 — cancer biology — Posted on 2019-05-10

2332 Distributed dynamic coding for spatial working memory in hippocampal-prefrontal networks

Hernan, A.; Mahoney, J.; Curry, W.; Mawe, S.; Scott, R. C.

10.1101/630673 — neuroscience — Posted on 2019-05-10

2333 Separation of hemodynamic signals from GCaMP fluorescence measured with widefield imaging

Valley, M. T.; Moore, M.; Zhuang, J.; Mesa, N.; Castelli, D.; Sullivan, D.; Reimers, M.; Waters, J.

10.1101/634923 — neuroscience — Posted on 2019-05-10

2334 Quantitative Models of Phage-Antibiotics Combination Therapy

Rodriguez-Gonzalez, R. A.; Leung, C. Y.; Chan, B. K.; Turner, P. E.; Weitz, J. S.

10.1101/633784 — microbiology — Posted on 2019-05-10

2335 Mouse IgG2a antibodies specific for the commensal Streptococcus mitis show stronger cross-reactivity with Streptococcus pneumoniae than IgG1 antibodies

Shekhar, S.; Khan, R.; Khan, A. U. R.; Petersen, F. C.

10.1101/635235 — immunology — Posted on 2019-05-10

2336 Context-dependent requirement of H3K9 methyltransferase activity during cellular reprogramming to iPSCs

Stadtfeld, M.; Vidal, S.; Polyzos, A.; Morales Valencia, J.; Wang, H.; Swanzey, E.; Ee, L.-s.; Amlani, B.; Tu, S.; Gong, Y.; Tsirigos, A.; Kim, S.; Apostolou, E.

10.1101/634949 — developmental biology — Posted on 2019-05-10

2337 Symmetric arrangement of mitochondria:plasma membrane contacts between adjacent photoreceptor cells regulated by Opa1

Meschede, I. P.; Seabra, M. C.; Futter, C. E.; Votruba, M.; Cheetham, M. E.; Burgoyne, T.

10.1101/635094 — cell biology — Posted on 2019-05-10

2338 The conformational and mutational landscape of the ubiquitin-like marker for the autophagosome formation in cancer

Aykac Fas, B.; Kumar, M.; Sora, V.; Mashkoor, M.; Lambrughi, M.; Tiberti, M.; Papaleo, E.

10.1101/635284 — cancer biology — Posted on 2019-05-10

2339 Single-cell analysis of EphA clustering phenotypes to probe cancer cell heterogeneity

Ravasio, A.; Myaing, M. Z.; Chia, S.; Arora, A.; Sathe, A.; Cao, E. Y.; Bertocchi, C.; Sharma, A.; Arasi, B.; Chung, V. Y.; Green, A. C.; Tan, T. Z.; Chen, Z.; Ong, H. T.; Iyer, N. G.; Huang, R. Y.; DasGupta, R.; Groves, J. T.; Viasnoff, V.

10.1101/635102 — cancer biology — Posted on 2019-05-10

2340 Consensus Machine Learning for Gene Target Selection in Pediatric AML Risk

Smith, J.; Maden, S.; Lee, D.; Buie, R.; Peddu, V.; Shean, R.; Busby, B.

10.1101/632166 — bioinformatics — Posted on 2019-05-10

2341 Stabilizing non-native excited states as a therapeutic strategy for targeting RNA

Ganser, L. R.; Chu, C.-C.; Bogerd, H. P.; Kelly, M. L.; Cullen, B. R.; Al-Hashimi, H. M.

10.1101/634576 — biochemistry — Posted on 2019-05-10

2342 A computational pipeline to predict cardiotoxicity:From the atom to the rhythm

Clancy, C. E.; Yang, P.-C.; DeMarco, K. R.; Aghasafari, P.; Jeng, M.-T.; Noskov, S. Y.; Yarov-Yarovoy, V.

10.1101/635433 — systems biology — Posted on 2019-05-10

2343 Environment rapidly upregulates serotonin 2A receptor expression via the immediate early gene Egr3

Zhao, X.; Meyers, K. T.; Marballi, K. K.; Maple, A. M.; Kang, P.; Palner, M.; Overgaard, A.; Gallitano, A. L.

10.1101/634410 — neuroscience — Posted on 2019-05-10

2344 Jumping To Conclusions, General Intelligence, And Psychosis Liability: Findings From The Multicentric EU-GEI Case-Control Study

Tripoli, G.; Quattrone, D.; FERRARO, L.; Gayer-Anderson, C.; Rodriguez, V.; LA CASCIA, C.; LA BARBERA, D.; SARTORIO, C.; Tarricone, I.; BERARDI, D.; Szoke, A.; Arango, C.; Tortelli, A.; Llorca, P.-M.; de Haan, L.; Velthorst, E.; Bobes, J.; Bernardo, M.; Sanjuan, J.; Santos, J. L.; Arrojo, M.; Del-Ben, C. M.; Rossi Menezes, P.; Selten, J.-P.; Jones, P. B.; Richards, A.; O'Donovan, M.; Rutten, B. R.; van Os, J.; Morgan, C.; Sham, P. C.; Murray, R. M.; Murray, G. K.; Di Forti, M.

10.1101/634352 — neuroscience — Posted on 2019-05-10

2345 Infection-driven activation of transglutaminase 2 boosts glucose uptake and hexosamine biosynthesis

Maffei, B.; Laverriere, M.; Wu, Y.; Triboulet, S.; Perrinet, S.; Duchateau, M.; Matondo, M.; Hollis, R. L.; Gourley, C.; Rupp, J.; Keillor, J. W.; Subtil, A.

10.1101/634501 — microbiology — Posted on 2019-05-10

2346 High contribution of Pelagibacterales to bacterial community composition and activity in spring blooms off Kerguelen Island (Southern Ocean)

Dinasquet, J.; Landa, M.; Obernosterer, I.

10.1101/633925 — microbiology — Posted on 2019-05-10

2347 Pan cancer patterns of allelic imbalance from chromosomal aberrations in 33 tumor types

Sivakumar, S.; San Lucas, F. A.; Jakubek, Y. A.; Fowler, J.; Scheet, P.

10.1101/635193 — genomics — Posted on 2019-05-10

2348 Sequence-level instructions direct transcription at polyT short tandem repeats.

Bessiere, C.; Saraswat, M.; Grapotte, M.; Menichelli, C.; Ramilowski, J.; Severin, J.; Hayashizaki, Y.; Itoh, M.; Hasegawa, A.; Suzuki, H.; Carninci, P.; de Hoon, M.; W. Wasserman, W.; Brehelin, L.; Lecellier, C.-H.

10.1101/634261 — genomics — Posted on 2019-05-10

2349 Efficient strategies to detect genome editing and integrity in CRISPR-Cas9 engineered ESCs

Gehre, M.; Buccitelli, C.; Diaz, N.; Korbel, J.; Noh, K.-M.

10.1101/635151 — genetics — Posted on 2019-05-10

2350 Consumer sexual dimorphism promotes coexistence among competing resources

De Lisle, S.; Hernando, G.; Bolnick, D. I.

10.1101/634782 — ecology — Posted on 2019-05-10

2351 Evaluation of biodiversity metrics through environmental DNA metabarcoding outperforms visual and capturing surveys

Doi, H.; Inui, R.; Matsuoka, S.; Akamatsu, Y.; Goto, M.; Kono, T.

10.1101/617670 — ecology — Posted on 2019-05-10

2352 A comparative assessment of adult mosquito trapping methods to estimate spatial patterns of abundance and community composition in southern Africa

Gorsich, E. E.; Beechler, B. R.; van Bodegom, P. M.; Govender, D.; Guarido, M. M.; Venter, M.; Schrama, M.

10.1101/633552 — ecology — Posted on 2019-05-10

2353 Simulating groundcover community assembly in a frequently burned ecosystem using a simple neutral model

Loudermilk, E. L.; Dyer, L.; Pokswinski, S.; Hudak, A.; Hornsby, B.; Richards, L.; Dell, J.; Goodrick, S. L.; Hiers, J. K.; O'Brien, J. J.

10.1101/635169 — ecology — Posted on 2019-05-10

2354 How do red-eyed treefrog embryos sense motion in predator attacks? Assessing the role of vestibular mechanoreception

Jung, J.; Kim, S. J.; Perez Arias, S. M.; McDaniel, J. G.; Warkentin, K. M.

10.1101/634899 — developmental biology — Posted on 2019-05-10

2355 Quantifying E2F1 protein dynamics in single cells

Mathey-Prevot, B.; Parker, B.-T.; Im, C.; Hong, C.; Dong, P.; Yao, G.; You, L.

10.1101/634956 — cell biology — Posted on 2019-05-10

2356 Mesoscale liquid model of chromatin recapitulates large-scale organization of eukaryotic cell nuclei.

Laghmach, R.; Pierro, M. D.; Potoyan, D. A.

10.1101/634980 — biophysics — Posted on 2019-05-10

2357 Real Time Ultrasound Molecular Imaging of Prostate Cancer with PSMA-targeted Nanobubbles

Perera, R. H.; De Leon, A.; Wang, X.; Wang, Y.; Ramamurthy, G.; Peiris, P.; Abenojar, E.; Basilion, J. P.; Exner, A. A.

10.1101/634444 — bioengineering — Posted on 2019-05-10

2358 A cytochrome P450 from juvenile mustard leaf beetles hydroxylates geraniol, a key step in iridoid biosynthesis

Fu, N.; Yang, Z.-l.; Pauchet, Y.; Paetz, C.; Brandt, W.; Boland, W.; Burse, A.

10.1101/634485 — biochemistry — Posted on 2019-05-10

2359 The Biogeography of coelurosaurian theropods and its impact on their evolutionary history

Ding, A.; Pittman, M.; Upchurch, P.; O'Connor, J.; Field, D.; Xu, X.

10.1101/634170 — paleontology — Posted on 2019-05-10

2360 Molecular Expression Profiles of Morphologically Defined Hippocampal Neuron Types: Empirical Evidence and Relational Inferences

White, C. M.; Rees, C. L.; Wheeler, D. W.; Hamilton, D. J.; Ascoli, G. A.

10.1101/633883 — neuroscience — Posted on 2019-05-10

2361 Development of an innovative in vitro method for mass production of Verticillium dahliae microsclerotia

Sayago, P.; Juncosa, F.; Albarracin Orio, A.; Paccioretti, M.; Gonzales, V.; Otero, M. L.; Ducasse, D. A.

10.1101/635276 — microbiology — Posted on 2019-05-10

2362 Oral bacteriophages are maintained at high levels for months in individuals but infrequently transmitted between mothers and infants

Beall, C. J.; Sulyanto, R. M.; Griffen, A. L.; Leys, E. J.

10.1101/633727 — microbiology — Posted on 2019-05-10

2363 Dsuite - fast D-statistics and related admixture evidence from VCF files

Malinsky, M.

10.1101/634477 — genomics — Posted on 2019-05-10

2364 A method for non-invasive prenatal diagnosis of monogenic autosomal recessive disorders

Cutts, A.; Vavoulis, D. V.; Petrou, M.; Smith, F.; Clark, B.; Henderson, S.; Schuh, A.

10.1101/635342 — genomics — Posted on 2019-05-10

2365 Automated data-intensive forecasting of plant phenology throughout the United States

Taylor, S. D.; White, E. P.

10.1101/634568 — ecology — Posted on 2019-05-10

2366 Machine learning versus mechanistic modeling for prediction of metastatic relapse in breast cancer

Nicolo, C.; Perier, C.; Prague, M.; MacGrogan, G.; Saut, O.; Benzekry, S.

10.1101/634428 — cancer biology — Posted on 2019-05-10

2367 ADAPTS: Automated Deconvolution Augmentation of Profiles for Tissue Specific cells

Danziger, S. A.; Gibbs, D. L.; Shmulevich, I.; McConnell, M.; Trotter, M. W.; Schmitz, F.; Reiss, D. J.; Ratushny, A. V.

10.1101/633958 — biophysics — Posted on 2019-05-10

2368 Quantifying the Benefit Offered by Transcript Assembly on Single-Molecule Long Reads

Tung, L. H.; Shao, M.; Kingsford, C.

10.1101/632703 — bioinformatics — Posted on 2019-05-10

2369 Characterisation of the c10orf76-PI4KB complex, and its necessity for Golgi PI4P levels and enterovirus replication

McPhail, J. A.; Lyoo, H.; Pemberton, J. G.; Hoffmann, R. M.; van Elst, W.; Strating, J. R. P. M.; Jenkins, M. L.; Stariha, J.; van Kuppeveld, F. J. M.; Balla, T.; Burke, J. E.

10.1101/634592 — biochemistry — Posted on 2019-05-10

2370 Emergence of consistent intra-individual locomotor patterns during zebrafish development

Fitzgerald, J. A.; Kirla, K. T.; Zinner, C. P.; vom Berg, C. M.

10.1101/634451 — animal behavior and cognition — Posted on 2019-05-10

2371 Inverse regulation of secretion and inflammation in human airway gland serous cells by neuropeptides upregulated in allergy and asthma

McMahon, D. B.; Kohanski, M. A.; Tong, C. C. L.; Papagiannopoulos, P.; Adappa, N. D.; Palmer, J. N.; Lee, R. J.

10.1101/632224 — physiology — Posted on 2019-05-10

2372 Building Functional Connectivity Neuromarkers of Behavioral Self-Regulation in Children with and without Autism Spectrum Disorder

Rohr, C.; Kamal, S.; Bray, S.

10.1101/635292 — neuroscience — Posted on 2019-05-10

2373 Reciprocal connectivity between secondary auditory cortical field and amygdala in mice

Tsukano, H.; Hou, X.; Horie, M.; Kitaura, H.; Nishio, N.; Hishida, R.; Takahashi, K.; Kakita, A.; Takebayashi, H.; Sugiyama, S.; Shibuki, K.

10.1101/634469 — neuroscience — Posted on 2019-05-10

2374 Some common pathways perturbed in septic shock and cancer

Tripathi, H.; Mukhopadhyay, S.; Mohapatra, S. K.

10.1101/635243 — genomics — Posted on 2019-05-10

2375 Dissecting the functions of NIPBL using genome editing: The importance of the N-terminus of NIPBL in transcriptional regulation

Izumi, K.; Akiyama, K.; Fujiki, K.; Masuda, K.; Nakato, R.; Otsubo, A.; Bando, M.; Shirahige, K.

10.1101/616086 — genetics — Posted on 2019-05-10

2376 Molecular basis for dyneinopathies reveals insight into dynein regulation and dysfunction

Marzo, M. G.; Griswold, J. M.; Ruff, K. M.; Buchmeier, R. E.; Fees, C. P.; Markus, S. M.

10.1101/635383 — cell biology — Posted on 2019-05-10

2377 Informed and uninformed empirical therapy policies

Houy, N.; Flaig, J.

10.1101/629550 — epidemiology — Posted on 2019-05-10

2378 Tracking progress towards malaria elimination in China: estimates of reproduction numbers and their spatiotemporal variation

Routledge, I.; Lai, S.; Battle, K. E.; Ghani, A. C.; Gomez Rodriguez, M.; Gustafson, K. B.; Mishra, S.; Proctor, J. L.; Tatem, A. J.; Li, Z.; Bhatt, S.

10.1101/628842 — epidemiology — Posted on 2019-05-10

2379 Association of Obesity with Health Care Costs: A Mendelian Randomization study

Kurz, C.; Laxy, M.

10.1101/630178 — epidemiology — Posted on 2019-05-10

2380 Inferring the ecological drivers of arboviral outbreaks

Tennant, W. S. D.; McKinley, T. J.; Recker, M.

10.1101/632133 — epidemiology — Posted on 2019-05-10

2381 Increased risk of infections in Addison’s disease and congenital adrenal hyperplasia: a primary care database cohort study

Tresoldi, A. S.; Sumilo, D.; Perrins, M.; Toulis, K. A.; Prete, A.; Reddy, N.; Wass, J. A. H.; Arlt, W.; Nirantharakumar, K.

10.1101/628156 — epidemiology — Posted on 2019-05-10

2382 Comparison of multi-parallel qPCR and Kato-Katz for detection of soil-transmitted helminth infection among children in rural Bangladesh

Benjamin-Chung, J.; Pilotte, N.; Ercumen, A.; Grant, J. R.; Maasch, J. R. M. A.; Gonzales, A. M.; Abrams, B. P.; Ester, A. C.; Arnold, B. F.; Rahman, M.; Haque, R.; Hubbard, A. E.; Luby, S. P.; Williams, S. A.; Colford, J. M.

10.1101/629501 — epidemiology — Posted on 2019-05-10

2383 Integrating exposure knowledge and serum suspect screening as a new approach to biomonitoring: An application in firefighters and office workers

Grashow, R.; Bessonneau, V.; Gerona, R. R.; Wang, A.; Trowbridge, J.; Lin, T.; Buren, H.; Rudel, R. A.; Morello-Frosch, R.

10.1101/630848 — epidemiology — Posted on 2019-05-10

2384 Longitudinal transcriptome-wide gene expression analysis of sleep deprivation treatment showsinvolvement of circadian genes and immune pathways

Foo, J. C.; Trautmann, N.; Sticht, C.; Treutlein, J.; Frank, J.; Streit, F.; Witt, S. H.; De La Torre, C.; Conrad von Heydendorff, S.; Sirignano, L.; Chen, J.; Mueller-Myhsok, B.; Meyer-Lindenberg, A.; Witt, C. C.; Gilles, M.; Deuschle, M.; Rietschel, M.

10.1101/628172 — epidemiology — Posted on 2019-05-10

2385 A Phenome-wide Mendelian Randomisation study on genetically determined serum urate levels in UK Biobank cohort

Li, X.; Meng, X.; He, Y.; Spiliopoulou, A.; Timofeeva, M.; Wei, W.-Q.; Gifford, A.; Yang, T.; Varley, T.; Tzoulaki, I.; Joshi, P.; Denny, J. C.; Mckeigue, P.; Campbell, H.; Theodoratou, E.

10.1101/630293 — epidemiology — Posted on 2019-05-10

2386 Lassa Virus in the Host Rodent Mastomys Natalensis within Urban Areas of N’zerekore, Guinea

Karan, L. S.; Makenov, M. T.; Korneev, M. G.; Sacko, N.; Boumbaly, S.; Bayandin, R. B.; Gladysheva, A. V.; Kourouma, K.; Toure, A. H.; Kartashov, M. Y.; Shipovalov, A. V.; Porshakov, A. M.; Koulibaly, M.; Boiro, M. Y.

10.1101/616466 — epidemiology — Posted on 2019-05-10

2387 Tubewell use protects against rotavirus infection during the monsoons in an urban setting

Martinez, P. P.; Mahmud, A. S.; Yunus, M.; Faruque, A. S. G.; Ahmed, T.; Pascual, M.; Buckee, C.

10.1101/630855 — epidemiology — Posted on 2019-05-10

2388 ADHD genetic liability and physical health outcomes - A two-sample Mendelian randomization study

Leppert, B.; Riglin, L.; Dardani, C.; Thapar, A.; Staley, J. R.; Tilling, K.; Davey Smith, G.; Thapar, A.; Stergiakouli, E.

10.1101/630467 — epidemiology — Posted on 2019-05-10

2389 Estimating serotype-specific efficacy of pneumococcal conjugate vaccines using hierarchical models

Warren, J. L.; Weinberger, D. M.

10.1101/633909 — epidemiology — Posted on 2019-05-10

2390 Maximum likelihood method quantifies the overall contribution of gene-environment interaction to complex traits: an application to obesity traits

Sulc, J.; Mounier, N.; Gunther, F.; Winkler, T.; Wood, A.; Frayling, T.; Heid, I.; Robinson, M.; Kutalik, Z.

10.1101/632380 — epidemiology — Posted on 2019-05-10

2391 Demonstration of different entity of appendicitis and related causes of disease through study of cluster/outbreak: Systematic Review and Meta Analysis.

Guo, Y.-T.; Liu, G.-Z.; Tan, S.-Y.; Guo, Y.

10.1101/628586 — epidemiology — Posted on 2019-05-10

2392 Emergence and Genetic Analysis of Avian Gyrovirus 2 Variants-Related Gyrovirus in Farmed King-ratsnakes (Elaphe carinata): the First Report in China

Wu, Q.; Chen, Q.; Hu, W.; Wang, X.; Ji, J.

10.1101/629980 — epidemiology — Posted on 2019-05-10

2393 Pediatric Hodgkin disease in Brazil: a disease with a highly heterogeneous treatment

Peres, F. L.; Chagas, A. P.; Dassi, N.; Almeida, T. G.; Cagol, A. R.; Lorea, C. F.; Santiago, P.; de Borba, L. G.; Daudt, L. E.; Michalowski, M. B.

10.1101/628735 — epidemiology — Posted on 2019-05-10

2394 Predicting biological age based on the BBMRI-NL 1H-NMR metabolomics repository

van den Akker, E. B.; Trompet, S.; Barkey Wolf, J. J.; Beekman, M. B.; Suchiman, H. E.; Deelen, J.; Asselbergs, F. W.; NL, B.; Boersma, E.; Cats, D.; Elders, P. M.; Geleijnse, J. M.; Ikram, M. A.; Kloppenburg, M.; Mei, H.; Meulenbelt, I.; Mooijaart, S. P.; Nelissen, R. G.; Netea, M. G.; Penninx, B. W.; Slofstra, M.; Stehouwer, C. D.; Swertz, M. A.; Teunissen, C. E.; Terwindt, G. M.; 't Hart, L. M.; van den Maagdenberg, A. M.; Harst, P. v. d.; van der Horst, I. C.; van der Kallen, C. J.; van Greevenbroek, M. M.; van Spil, W. E.; Wijmenga, C.; Zhernakova, A.; Zwinderman, A. H.; Sattar, N.; Juke

10.1101/632919 — epidemiology — Posted on 2019-05-10

2395 Is asthma associated with exposure to smoke from a coal mine fire?

Taylor, S.; Borg, B.; Gao, C.; Brown, D.; Hoy, R.; Makar, A.; McCrabb, T.; Ikin, J.; Thompson, B.; Abramson, M.

10.1101/631317 — epidemiology — Posted on 2019-05-10

2396 The Group B Streptococcal surface antigen I/II protein, BspC, interacts with host vimentin to promote adherence to brain endothelium and inflammation during the pathogenesis of meningitis

Deng, L.; Spencer, B. L.; Holmes, J. A.; Mu, R.; Rego, S.; Weston, T. A.; Hu, Y.; Sanches, G. F.; Yoon, S.; Park, N.; Nagao, P. E.; Jenkinson, H. F.; Thornton, J. A.; Seun, K. S.; Nobbs, A. H.; Doran, K. S.

10.1101/544395 — microbiology — Posted on 2019-05-10

2397 Nucleosomal DNA dynamics mediate Oct4 pioneer factor binding

Huertas, J.; MacCarthy, C. M.; Schoeler, H. R.; Cojocaru, V.

10.1101/634386 — biophysics — Posted on 2019-05-10

2398 Dynamic Modeling of Signal Transduction by mTOR Complexes in Cancer

Dorvash, M.; Farahmandnia, M.; Mosaddeghi, P.; Farahmandnejad, M.; Saber, H.; Khorraminejad-Shirazi, M.; Azadi, A.; Tavassoly, I.

10.1101/633891 — systems biology — Posted on 2019-05-10

2399 The effect of global signal regression on DCM estimates of noise and effective connectivity from resting state fMRI

Almgren, H.; Van de Steen, F.; Razi, A.; Friston, K.; Marinazzo, D.

10.1101/634063 — neuroscience — Posted on 2019-05-10

2400 Differential functions of splicing factors in breast-cancer initiation and metastasis

Das, S.; Akerman, M.; Park, S.; Brugioli, M.; Geier, A.; Kesarwani, A. K.; Fan, M.; Leclair, N.; Urbanski, L.; Lin, K.-T.; Hu, C.; Hua, X.; George, J.; Muthuswamy, S. K.; Krainer, A. R.; Anczukow, O.

10.1101/634154 — cancer biology — Posted on 2019-05-10

2401 Cross-talk between SIM2s and NFkB regulates cyclooxygenase 2 expression in breast cancer

Wyatt, G. L.; Young, C.; Crump, L.; Wessells, V.; Gustafson, T.; Fan, Y.-Y.; Chapkin, R.; Porter, W.; Lyons, T. R.

10.1101/634113 — cancer biology — Posted on 2019-05-10

2402 Computational Analysis of Therapeutic Neuroadaptation to Chronic Antidepressant in a Model of the Monoaminergic Neurotransmitter, Stress Hormone, and Male Sex Hormone Systems

Bonyadi Camacho, M. J.; Vijitbenjaronk, W. D.; Anastasio, T. J.

10.1101/634030 — neuroscience — Posted on 2019-05-10

2403 Well-Differentiated Papillary Mesothelioma of the Peritoneum is Genetically Distinct from Malignant Mesothelioma

Shrestha, R.; Nabavi, N.; Volik, S.; Anderson, S.; Haegert, A.; McConeghy, B.; Brahmbhatt, S.; Bell, R. H.; Le Bihan, S.; Wang, Y.; Collins, C. C. C.; Churg, A.

10.1101/632810 — cancer biology — Posted on 2019-05-10

2404 Hierarchical cell type classification using mass, heterogeneous RNA-seq data from human primary cells

Bernstein, M. N.; Dewey, C. N.

10.1101/634097 — bioinformatics — Posted on 2019-05-10

2405 Identification of NAD-dependent xylitol dehydrogenase from Gluconobacter oxydans WSH-003

Liu, L.; Zeng, W.; Du, G.; Chen, J.; Zhou, J.

10.1101/634238 — bioengineering — Posted on 2019-05-10

2406 Peptides derived of kunitz-type serine protease inhibitor as potential vaccine against experimental schistosomiasis

Hernandez-Goenaga, J.; Lopez-Aban, J.; Protasio, A. V.; Vicente, B.; del Olmo, E.; Vanegas, M.; Fernandez-Soto, P.; Patarroyo, M. A.; Muro, A.

10.1101/634360 — immunology — Posted on 2019-05-10

2407 Computational Analysis of Therapeutic Neuroadaptation to Chronic Antidepressant in a Model of the Monoaminergic Neurotransmitter and Stress Hormone Systems

Bonyadi Camacho, M.; Vijitbenjaronk, W. D.; Anastasio, T. J.

10.1101/633990 — neuroscience — Posted on 2019-05-10

2408 The cell cycle in Staphylococcus aureus is regulated by an amidase that controls peptidoglycan synthesis

Do, T.; Schaefer, K.; Santiago, A. G.; Coe, K. A.; Fernandes, P. B.; Kahne, D.; Pinho, M. G.; Walker, S.

10.1101/634089 — microbiology — Posted on 2019-05-10

2409 High risk glioblastoma cells revealed by machine learning and single cell signaling profiles

Leelatian, N.; Sinnaeve, J.; Mistry, A. M.; Barone, S. M.; Diggins, K. E.; Greenplate, A. R.; Weaver, K. D.; Thompson, R. C.; Chambless, L. B.; Mobley, B. C.; Ihrie, R. A.; Irish, J. M.

10.1101/632208 — cancer biology — Posted on 2019-05-10

2410 Deep serum proteomics reveal biomarkers and causal candidates for type 2 diabetes

Gudmundsdottir, V.; Emilsson, V.; Aspelund, T.; Ilkov, M.; Gudmundsson, E. F.; Zilhao, N. R.; Lamb, J. R.; Jennings, L. L.; Gudnason, V.

10.1101/633297 — genetics — Posted on 2019-05-10

2411 A comparison of eDNA to camera trapping for assessment of terrestrial mammal diversity

Leempoel, K.; Hebert, T.; Hadly, E. A.

10.1101/634022 — ecology — Posted on 2019-05-10

2412 Predictive modeling of co-evolving growing populations

Altrock, P. M.; Ferrall-Fairbanks, M. C.; Kimmel, G. J.

10.1101/633750 — cancer biology — Posted on 2019-05-10

2413 Interrelation between enzyme activity and stability with the local dynamics: Mutational and MD simulations based investigations

Moharana, T. R.; Kumar, V.; Rao, N. M.

10.1101/634253 — biophysics — Posted on 2019-05-10

2414 HIPPIE2: a method for fine-scale identification of physically interacting chromatin regions

Kuksa, P. P.; Amlie-Wolf, A.; Hwang, Y.-C.; Valladares, O.; Gregory, B. D.; Wang, L.-S.

10.1101/634006 — bioinformatics — Posted on 2019-05-10

2415 An active inference model of concept learning

Smith, R.; Schwartenbeck, P.; Parr, T.; Friston, K. J.

10.1101/633677 — neuroscience — Posted on 2019-05-10

2416 Ultrafast Structural Changes Decomposed from Serial Crystallographic Data

Ren, Z.

10.1101/634071 — biophysics — Posted on 2019-05-10

2417 Compress global, dilate local: Intentional binding in action-outcome alternations

Imaizumi, S.; Tanno, Y.; Imamizu, H.

10.1101/507582 — neuroscience — Posted on 2019-05-10

2418 Impact of functional synapse clusters on neuronal response selectivity.

Ujfalussy, B. B.; Makara, J. K.

10.1101/634220 — neuroscience — Posted on 2019-05-10

2419 Expression of genes in the 16p11.2 locus during human fetal cortical neurogenesis.

Morson, S.; Yang, Y.; Price, D. J.; Pratt, T.

10.1101/633461 — neuroscience — Posted on 2019-05-10

2420 Insertional oncogenesis by HPV70 revealed by multiple genomic analyses in a clinically HPV-negative cervical cancer

Van Arsdale, A.; Patterson, N. E.; Maggi, E. C.; Agoni, L.; Van Doorslaer, K.; Harmon, B.; Nevadunsky, N.; Kuo, D. Y. S.; Einstein, M. H.; Lenz, J.; Montagna, C.

10.1101/634857 — cancer biology — Posted on 2019-05-10

2421 Kin28 depletion increases association of TFIID subunits Taf1 and Taf4 with promoters in Saccharomyces cerevisiae

Knoll, E. R.; Zhu, Z. I.; Sarkar, D.; Landsman, D.; Morse, R.

10.1101/634824 — genetics — Posted on 2019-05-10

2422 A cross-disorder MR-pheWAS of 5 major psychiatric disorders in UK Biobank

Leppert, B.; Millard, L. A.; Riglin, L.; Davey Smith, G.; Thapar, A.; Tilling, K.; Walton, E.; Stergiakouli, E.

10.1101/634774 — epidemiology — Posted on 2019-05-10

2423 A systematic review and evaluation of Zika virus forecasting and prediction research during a public health emergency of international concern

Kobres, P.-Y.; Chretien, J.-P.; Johansson, M. A.; Morgan, J.; Whung, P.-Y.; Mukundan, H.; Del Valle, S. Y.; Forshey, B. M.; Quandelacy, T. M.; Biggerstaff, M.; Viboud, C.; Pollett, S.

10.1101/634832 — epidemiology — Posted on 2019-05-10

2424 Variation benchmark datasets: update, criteria, quality and applications

Sarkar, A.; Yang, Y.; Vihinen, M.

10.1101/634766 — bioinformatics — Posted on 2019-05-10

2425 Environmental, social, management and health factors associated with within- and between-individual variability in fecal glucocorticoid metabolite concentrations in zoo-housed Asian and African elephants

Brown, J. L.; Bray, J.; Carlstead, K. L.; Dickey, D.; Farin, C.; Ange, K.

10.1101/634691 — zoology — Posted on 2019-05-10

2426 An atlas of the catalytically active liver and spleen kinases in chicken identified by chemoproteomics

Nanduri, B.; Gresham, C. R.; Ou, M.; Hui, W. W.; Bailey, R. H.; Edelmann, M. J.

10.1101/634683 — zoology — Posted on 2019-05-10

2427 An asexual flower of Silene latifolia and Microbotryum lychnidis-dioicae promoting its sexual-organ development

Kawamoto, H.; Yamanaka, K.; Koizumi, A.; Ishii, K.; Kazama, Y.; Abe, T.; Kawano, S.

10.1101/634725 — plant biology — Posted on 2019-05-10

2428 Resolving noise-control conflict by gene duplication

Chapal, M.; Mintzer, S.; Brodsky, S.; Carmi, M.; Barkai, N.

10.1101/634741 — evolutionary biology — Posted on 2019-05-10

2429 CDK1 phosphorylates ULK1-ATG13 complex to regulate mitotic autophagy and Taxol chemosensitivity

Li, Z.; Tian, X.; Ji, X.; Wang, D.; Zhang, X.

10.1101/634733 — cell biology — Posted on 2019-05-10

2430 Ocular vestibular evoked myogenic potential (VEMP) reveals subcortical HTLV-1-associated neurological disease

Silva, T. R.; Santos, M. A. R.; Resende, L. M. d.; Labanca, L.; Scoralick Dias, R. T. T.; Utsch Goncalves, D.

10.1101/634709 — neuroscience — Posted on 2019-05-10

2431 Monitoring the depth of anesthesia using Autoregressive model and Sample entropy

Fugui, Z.; Hou, C.; Luo, X.; Huo, D.

10.1101/634675 — bioengineering — Posted on 2019-05-10

2432 How well do routine molecular diagnostics detect rifampicin heteroresistance in Mycobacterium tuberculosis?

Ng, K. C. S.; Supply, P.; Cobelens, F.; Gaudin, C.; Gonzalez-Martin, J.; C. de Jong, B.; Rigouts, L.

10.1101/632851 — microbiology — Posted on 2019-05-10

2433 PilT and PilU are homohexameric ATPases that coordinate to retract type IVa pili

Chlebek, J. L.; Hughes, H. Q.; Ratkiewicz, A. S.; Rayyan, R.; Wang, J. C.-Y.; Herrin, B. E.; Dalia, T. N.; Biais, N.; Dalia, A. B.

10.1101/634048 — microbiology — Posted on 2019-05-10

2434 A First-Order Design Requirement to Prevent Edema in Mechanical Counter-Pressure Space Suit Garments

Carr, C. E.; Trevino, L.

10.1101/633917 — physiology — Posted on 2019-05-10

2435 Swim exercise in C. elegans extends neuromuscular and intestinal healthspan, enhances learning ability, and protects against neurodegeneration

Laranjeiro, R.; Harinath, G.; Hewitt, J. E.; Hartman, J. H.; Royal, M. A.; Meyer, J. N.; Vanapalli, S. A.; Driscoll, M.

10.1101/633776 — neuroscience — Posted on 2019-05-09

2436 Androgen-regulated transcription of ESRP2 drives alternative splicing patterns in prostate cancer

Munkley, J.; Ling, L.; Krishnan, S. R. G.; Hysenaj, G.; Scott, E.; Oo, H. Z.; Maia, T.; Cheung, K.; Ehrmann, I.; Livermore, K.; Zielinska, H.; Thompson, O.; Knight, B.; McCullagh, P.; McGrath, J.; Crundwell, M.; Harries, L. W.; Daugaard, M.; Cockell, S.; Barbosa-Morais, N. L.; Oltean, S.; Elliott, D. J.

10.1101/629618 — molecular biology — Posted on 2019-05-09

2437 Genome structure predicts modular transcriptome responses to genetic and environmental conditions

Mark, S.; Weiss, J.; Sharma, E.; Liu, T.; Wang, W.; Claycomb, J.; Cutter, A.

10.1101/517235 — genomics — Posted on 2019-05-09

2438 Complex-Traits Genetics Virtual Lab: A community-driven web platform for post-GWAS analyses

Cuellar-Partida, G.; Lundberg, M.; Kho, P. F.; D'Urso, S.; Gutierrez-Mondragon, L. F.; Ngo, T.; Hwang, L.-D.

10.1101/518027 — genetics — Posted on 2019-05-09

2439 Epistatic Networks Associated with Parent-of-Origin Effects on Metabolic Traits

Macias-Velasco, J. F.; St. Pierre, C. L.; Wayhart, J. P.; Yin, L.; Spears, L.; Miranda, M. A.; Funai, K.; Cheverud, J. M.; Semenkovich, C. F.; Lawson, H. A.

10.1101/579748 — genomics — Posted on 2019-05-09

2440 Genetically regulated gene expression underlies lipid traits in Hispanic cohorts

Andaleon, A.; Mogil, L. S.; Wheeler, H. E.

10.1101/507905 — genetics — Posted on 2019-05-09

2441 The homeostatic dynamics of feeding behaviour identify novel mechanisms of anorectic agents

McGrath, T. M.; Spreckley, E.; Rodriguez, A. F.; Viscomi, C.; Alamshah, A.; Akalestou, E.; Murphy, K. G.; Jones, N. S.

10.1101/578344 — animal behavior and cognition — Posted on 2019-05-09

2442 An inexpensive remotely-operated video recording system for continuous behavioral observations

Weber, W. D.; Fisher, H. S.

10.1101/596106 — animal behavior and cognition — Posted on 2019-05-09

2443 The fungal sesquiterpenoid pyrenophoric acid B uses the plant ABA biosynthetic pathway to inhibit seed germination.

Lozano-Juste, J.; Masi, M.; Cimmino, A.; Clement, S.; Fernandez, M. A.; Antoni, R.; Meyer, S.; Rodriguez, P. L.; Evidente, A.

10.1101/622530 — plant biology — Posted on 2019-05-09

2444 High diagnostic yield and clinical utility of WES for patients with undiagnosed genetic disorder by automating variant interpretation

Seo, G. H.; Park, J.-Y.; Kim, S.; Lee, J.; Oh, A.; Lee, Y.; Choi, J.; Kim, T.; Keum, C.; Lee, B. h.

10.1101/628438 — genetics — Posted on 2019-05-09

2445 GENETIC RESILIENCE OF A ONCE ENDANGERED SPECIES, TIBETAN ANTELOPE (Pantholops hodgsonii)

Shi, Y.; Chen, J.; Su, J.; Zhang, T.; Wasser, S. K.

10.1101/628727 — genetics — Posted on 2019-05-09

2446 Computational modeling of anthocyanin pathway evolution: Biases, hotspots, and trade-offs

Wheeler, L. C.; Smith, S. D.

10.1101/511089 — evolutionary biology — Posted on 2019-05-09

2447 Are Zinc oxide nanoparticles safe? A structural study on human serum albumin using in vitro and in silico methods

Hassanian, M.; Aryapour, H.; Goudarzi, A.; Bezi Javan, M.

10.1101/503797 — biochemistry — Posted on 2019-05-09

2448 Post-transcriptional regulation of Nrf2-mRNA by the mRNA-binding proteins HuR and AUF1

Poganik, J. R.; Long, M. J.; Disare, M. T.; Liu, X.; Chang, S.-H.; Hla, T.; Aye, Y.

10.1101/565937 — biochemistry — Posted on 2019-05-09

2449 Convergent evidence for predispositonal effects of brain volume on alcohol consumption

Baranger, D. A.; Demers, C. H.; Elsayed, N. M.; Knodt, A. R.; Radtke, S. R.; Desmarais, A.; Few, L. R.; Agrawal, A.; Heath, A. C.; Barch, D. M.; Squeglia, L. M.; Williamson, D. E.; Hariri, A. R.; Bogdan, R.

10.1101/299149 — neuroscience — Posted on 2019-05-09

2450 Neural correlates of object and action naming practice

Delikishkina, E.; Lingnau, A.; Miceli, G.

10.1101/590026 — neuroscience — Posted on 2019-05-09

2451 Collicular circuits for flexible sensorimotor routing

Duan, C. A.; Pagan, M.; Piet, A. T.; Kopec, C. D.; Akrami, A.; Riordan, A. J.; Erlich, J. C.; Brody, C. D.

10.1101/245613 — neuroscience — Posted on 2019-05-09

2452 The landscape of coadaptation in Vibrio parahaemolyticus

Cui, Y.; Yang, C.; Qiu, H.; Wang, H.; Yang, R.; Falush, D.

10.1101/373936 — microbiology — Posted on 2019-05-09

2453 A conserved regulatory program drives emergence of the lateral plate mesoderm

Prummel, K. D.; Hess, C.; Nieuwenhuize, S.; Parker, H. J.; Rogers, K. W.; Kozmikova, I.; Racioppi, C.; Brombacher, E. C.; Czarkwiani, A.; Knapp, D.; Burger, S.; Chiavacci, E.; Shah, G.; Burger, A.; Huisken, J.; Yun, M. H.; Christiaen, L.; Kozmik, Z.; Mueller, P.; Bronner, M.; Krumlauf, R.; Mosimann, C.

10.1101/261115 — developmental biology — Posted on 2019-05-09

2454 Live imaging the Foreign Body Response reveals how dampening inflammation reduces fibrosis

Gurevich, D.; French, K.; Collin, J.; Cross, S.; Martin, P.

10.1101/498444 — cell biology — Posted on 2019-05-09

2455 Maize Kernel Development Stage the Primary Factor in Differential Gene Expression in Response to Two Methods of Field Inoculation with Aspergillus flavus

Wahl, N. J.; Murray, S. C.; Zhang, H.-B.; Zhang, M.; Dickens, C. M.; Isakeit, T. S.

10.1101/617241 — plant biology — Posted on 2019-05-09

2456 Experience alterations in white matter structure and myelin-related gene expression in adult rats

Sampaio-Baptista, C.; Valles, A.; Khrapitchev, A. A.; Akkermans, G.; Winkler, A.; Foxley, S.; Sibson, N. R.; Roberts, M.; Miller, K.; Diamond, M. E.; Martens, G. J. M.; De Weerd, P.; Johansen-Berg, H.

10.1101/532572 — neuroscience — Posted on 2019-05-09

2457 Motor Learning Without Moving: Proprioceptive and Predictive Hand Localization After Passive Visuoproprioceptive Discrepancy Training

Mostafa, A. A.; 't Hart, B.; Henriques, D. Y.

10.1101/384941 — neuroscience — Posted on 2019-05-09

2458 Perturbations of the ZED1 Pseudokinase Activate Plant Immunity

Bastedo, D. P.; Khan, M.; Martel, A.; Seto, D.; Kireeva, I.; Zhang, J.; Masud, W.; Millar, D.; Lee, J. Y.; Lee, A. H.-Y.; Gong, Y.; Santos-Severino, A.; Guttman, D. S.; Desveaux, D.

10.1101/531665 — molecular biology — Posted on 2019-05-09

2459 Targeting microbial arsenic resistance genes: a new bioinformatic toolkit informs arsenic ecology and evolution in soil genomes and metagenomes

Dunivin, T. K.; Yeh, S. Y.; Shade, A.

10.1101/445502 — microbiology — Posted on 2019-05-09

2460 The impact of DNA polymerase and number of rounds of amplification in PCR on 16S rRNA gene sequence data

Sze, M. A.; Schloss, P. D.

10.1101/565598 — microbiology — Posted on 2019-05-09

2461 The multi PAM2 protein Upa2 functions as novel core component of endosomal mRNA transport

Jankowski, S.; Pohlmann, T.; Baumann, S.; Muentjes, K.; Kumar Devan, S.; Zander, S.; Feldbruegge, M.

10.1101/455378 — cell biology — Posted on 2019-05-09

2462 Dominance in dogs as rated by owners corresponds to ethologically valid markers of dominance

Kubinyi, E.; Wallis, L.

10.1101/419044 — animal behavior and cognition — Posted on 2019-05-09

2463 Simultaneous multi-area recordings suggest a novel hypothesis about how attention improves performance

Ruff, D. A.; Cohen, M. R.

10.1101/372888 — neuroscience — Posted on 2019-05-09

2464 Repression of ferritin light chain translation by human eIF3

Pulos, M. C.; Srole, D. N.; Lee, A. S.-Y.; Juarez, M. G.; McSwiggen, D. T.; Ingolia, N. T.; Cate, J. H.

10.1101/316299 — molecular biology — Posted on 2019-05-09

2465 Discovery of an essential mycobacterial polar growth factor involved in cell envelope integrity and LM/LAM transport

Gupta, K. R.; Rahlwes, K. C.; Wang, C.; Liu, J.; Morita, Y. S.; Rego, E. H.

10.1101/633768 — microbiology — Posted on 2019-05-09

2466 Human cardiac-fibrosis-on-a-chip model recapitulates disease hallmarks and can serve as a platform for drug screening

Mastikhina, O. N.; Moon, B.-U.; Williams, K.; Hatkar, R.; Gostafson, D.; Sun, X.; Koo, M.; Lam, A.; Sun, Y.; Fish, J. E.; Young, E. K.; Nunes, S. S.

10.1101/632406 — bioengineering — Posted on 2019-05-09

2467 Rapid identification of homozygosity and site of wild relative introgressions in wheat through chromosome-specific KASP genotyping assays

Grewal, S.; Hubbart-Edwards, S.; Yang, C.; Devi, U.; Baker, L.; Heath, J.; Ashling, S.; Scholefield, D.; Howells, C.; Yarde, J.; Isaac, P.; King, I. P.; King, J.

10.1101/633842 — plant biology — Posted on 2019-05-09

2468 MicroRNA Dynamics and Functions During Arabidopsis Embryogenesis

Plotnikova, A.; Kellner, M. J.; Mosiolek, M.; Schon, M. A.; Nodine, M. D.

10.1101/633735 — developmental biology — Posted on 2019-05-09

2469 NMDAR:flux-independent pH sensor & flux-dependent mitochondrial-membrane communication regulator.

Montes de Oca Balderas, P.; Hernandez Cruz, A.

10.1101/633875 — cell biology — Posted on 2019-05-09

2470 Cholesterol deprivation induces TGFβ signaling to promote basal differentiation in pancreatic cancer

Gabitova, L.; Peri, S.; Restifo, D.; Klochkova, A.; Hartman, T. R.; O'Reilly, A. M.; Francescone, R.; Franco-Barraza, J.; Shah, N.; Nicolas, E.; Handorf, E. A.; Cai, K. Q.; Mazitova, A.; Sloma, I.; Chiaverelli, R.; Moffitt, R.; Golemis, E. A.; Cukierman, E.; Astsaturov, I.

10.1101/633719 — cancer biology — Posted on 2019-05-09

2471 Swim exercise in C. elegans extends neuromuscular and intestinal healthspan, enhances learning ability, and protects against neurodegeneration

Laranjeiro, R.; Harinath, G.; Hewitt, J. E.; Hartman, J. H.; Royal, M. A.; Meyer, J. N.; Vanapalli, S. A.; Driscoll, M.

10.1101/633776 — neuroscience — Posted on 2019-05-09

2472 Auditory cortical generators of the Frequency Following Response are modulated by intermodal attention

Hartmann, T.; Weisz, N.

10.1101/633834 — neuroscience — Posted on 2019-05-09

2473 Nonreciprocal and Conditional Cooperativity Directs the Pioneer Activity of Pluripotency Transcription Factors

Li, S.; Zheng, E. B.; Zhao, L.; Liu, S.

10.1101/633826 — biophysics — Posted on 2019-05-09

2474 Tumor Evolution Decoder (TED): Unveiling Tumor Evolution Based on Mutation Profiles of Subclones or Single Cells

Zhu, Y.; Sengupta, S.; Wei, L.; Yang, S.; Ji, Y.

10.1101/633610 — bioinformatics — Posted on 2019-05-09

2475 A global screen for assembly state changes of the mitotic proteome by SEC-SWATH-MS

Heusel, M.; Frank, M.; Koehler, M.; Amon, S.; Frommelt, F.; Rosenberger, G.; Bludau, I.; Aulakh, S.; Linder, M. I.; Liu, Y.; Collins, B. C.; Matthias, G.; Ulrike, K.; Aebersold, R.

10.1101/633479 — systems biology — Posted on 2019-05-09

2476 Predicting neurodevelopmental outcomes in children with perinatal HIV using a novel machine learning algorithm

Paul, R.; Mellins, C.; Robbins, R.; Kerr, S.; Malee, K.; Sophonphan, J.; Jahanshad, N.; Auripibul, L.; Thongpibul, K.; Kosalaraksa, P.; Kanjanavanit, S.; Ngampiyaskul, C.; Luesomboon, W.; Wongsawat, J.; Vonthanak, S.; Chettra, K.; Suwanlerk, T.; Valcour, V.; Balla, L.; Salminen, L.; Preston, R.; Garcia, P.; Ananworanich, J.; Puthanakit, T.

10.1101/632273 — neuroscience — Posted on 2019-05-09

2477 A comprehensive knowledge base of synaptic electrophysiology in the rodent hippocampal formation

Moradi, K.; Ascoli, G.

10.1101/632760 — neuroscience — Posted on 2019-05-09

2478 Cornelia-de-Lange syndrome-associated mutations cause a DNA damage signalling and repair defect

Olley, G.; Pradeepa, M. M.; FitzPatrick, D. R.; Bickmore, W. A.; Boumendil, C.

10.1101/632992 — cell biology — Posted on 2019-05-09

2479 Awake hippocampal-prefrontal replay mediates spatial learning and decision making

Shin, J. D.; Tang, W.; Jadhav, S. P.

10.1101/632042 — neuroscience — Posted on 2019-05-09

2480 Operations Research Methods for Estimating the Population Size of Neuron Types

Attili, S. M.; Mackesey, S.; Ascoli, G.

10.1101/633313 — neuroscience — Posted on 2019-05-09

2481 Simple models of quantitative firing phenotypes in hippocampal neurons: comprehensive coverage of intrinsic diversity

Venkadesh, S.; Komendantov, A. O.; Wheeler, D. W.; Hamilton, D. J.; Ascoli, G. A.

10.1101/632430 — neuroscience — Posted on 2019-05-09

2482 Genomic basis of circannual rhythm in the European corn borer moth

Kozak, G. M.; Wadsworth, C. B.; Kahne, S. C.; Bogdanowicz, S. M.; Harrison, R. G.; Coates, B. S.; Dopman, E. B.

10.1101/633362 — evolutionary biology — Posted on 2019-05-09

2483 Automated cell boundary and 3D nuclear segmentation of cells in suspension

Kesler, B.; Li, G.; Thiemicke, A.; Venkat, R.; Neuert, G.

10.1101/632711 — systems biology — Posted on 2019-05-09

2484 Generating kinetic environments to study dynamic cellular processes in single cells

Thiemicke, A.; Jashnsaz, H.; Li, G.; Neuert, G.

10.1101/632687 — systems biology — Posted on 2019-05-09

2485 Pluronic gel-based burrowing assay for rapid assessment of neuromuscular health in C. elegans

Lesanpezeshki, L.; Hewitt, J. E.; Laranjeiro, R.; Antebi, A.; Driscoll, M.; Szewczyk, N. J.; Blawzdziewicz, J.; Lacerda, C. M. R.; Vanapalli, S. A.

10.1101/632083 — neuroscience — Posted on 2019-05-09

2486 Monitoring quinolone resistance due to Haemophilus influenzae mutations (2012-17)

Nagatomo, Y.; Shirakura, T.; Fukuchi, K.; Takuma, T.; Tokimatsu, I.; Niki, Y.

10.1101/632869 — molecular biology — Posted on 2019-05-09

2487 Microbial communities profiling in intensive care units expose limitations in current sanitary standards

Ribeiro, L. F.; Lopes, E. M.; Kishi, L. T.; Ribeiro, L. F. C.; Menegueti, M. G.; Gaspar, G. G.; Silva-Rocha, R.; Guazzaroni, M.-E.

10.1101/633404 — microbiology — Posted on 2019-05-09

2488 Monocytes from Older Adults Maintain Capacity for Metabolic Compensation during Glucose Deprivation and Lipopolysaccharide Stimulation

Yarbro, J. R.; Pence, B. D.

10.1101/633354 — immunology — Posted on 2019-05-09

2489 Stress-driven transposable element de-repression dynamics in a fungal pathogen

Fouche, S.; Badet, T.; Oggenfuss, U.; Plissonneau, C.; Sardinha Francisco, C.; Croll, D.

10.1101/633693 — genomics — Posted on 2019-05-09

2490 The role of tectonics and hydrothermalism in early human evolution at Olduvai Gorge

Sistiaga, A.; Husain, F.; Uribelarrea, D.; Martin-Perea, D.; Dominguez-Rodrigo, M.; Ferland, T.; Freeman, K. H.; Diez-Martin, F.; Baquedano, E.; Mabulla, A.; Summons, R. E.

10.1101/632414 — evolutionary biology — Posted on 2019-05-09

2491 HYPER-sol: flash-frozen results from archival FFPE tissue for clinical proteomics

Marchione, D. M.; Ilieva, I.; Garcia, B. A.; Pappin, D. J.; Wilson, J. P.; Wojcik, J. B.

10.1101/632315 — cancer biology — Posted on 2019-05-09

2492 MultiEditR: An easy validation method for detecting and quantifying RNA editing from Sanger sequencing

Kluesner, M.; Arnold, A.; Lerner, T.; Tasakis, R. N.; Wust, S.; Binder, M.; Moriarity, B. S.; Pecori, R.

10.1101/633685 — bioinformatics — Posted on 2019-05-09

2493 Bubble Trouble: Conquering Microbubble Limitations in Contrast Enhanced Ultrasound Imaging by Nature-Inspired Ultrastable Echogenic Nanobubbles

de Leon, A.; Perera, R.; Hernandez, C.; Cooley, M.; Jung, O.; Jeganathan, S.; Abenojar, E.; Fishbein, G.; Jafari Sojahrood, A.; Emerson, C.; Stewart, P.; Kolios, M.; Exner, A.

10.1101/633578 — bioengineering — Posted on 2019-05-09

2494 Acylcarnitine Metabolomic Profiles Inform Clinically-Defined Major Depressive Phenotypes

Ahmed, A. T.; MahmoudianDehkordi, S.; Bhattacharyya, S.; Arnold, M.; Liu, D.; Neavin, D.; Moseley, M. A.; Thompson, J. W.; Williams, L. S. J.; Louie, G.; Skime, M. K.; Wang, L.; Riva-Posse, P.; McDonald, W.; Bobo, W. V.; Craighead, W. E.; Krishnan, R.; Weinshilboum, R. M.; Dunlop, B. W.; Millington, D. S.; Rush, A. J.; Frye, M. A.; The Mood Disorders Precision Medicine Consortium, ; Kaddurah-Daouk, R.

10.1101/632448 — biochemistry — Posted on 2019-05-09

2495 Analysis of soybean germination, emergence, and prediction of a possible northward expansion of the crop under climate change

Lamichhane, J. R.; Constantin, J.; Schoving, C.; Maury, P.; Debaeke, P.; Aubertot, J.-N.; Dürr, C.

10.1101/632976 — plant biology — Posted on 2019-05-09

2496 Role of Triose Phosphate Utilization in photosynthetic response of rice to variable carbon dioxide levels and plant source-sink relations

Fabre, D.; Yin, X.; Dingkuhn, M.; Clement-Vidal, A.; Roques, S.; Rouan, L.; Soutiras, A.; Luquet, D.

10.1101/633016 — plant biology — Posted on 2019-05-09

2497 Sphingolipid production by gut Bacteroidetes regulates glucose homeostasis

Johnson, E. L.; Heaver, S. L.; Waters, J. L.; Kim, B. I.; Bretin, A.; Goodman, A. L.; Gewirtz, A. T.; Worgall, T. S.; Ley, R. E.

10.1101/632877 — microbiology — Posted on 2019-05-09

2498 Genomics of sorghum local adaptation to a parasitic plant

Bellis, E. S.; Deleo, V. L.; Kelly, E. A.; Lorts, C. M.; Rouhan, G.; Budden, A.; Bhaskara, G. B.; Hu, Z.; Muscarella, R.; Juenger, T. E.; Timko, M. P.; Morris, G.; dePamphilis, C. W.; Lasky, J.

10.1101/633529 — evolutionary biology — Posted on 2019-05-09

2499 A toolbox of nanobodies developed and validated for diverse neuroscience research applications

Dong, J.-X.; Lee, Y.; Kirmiz, M.; Palacio, S.; Dumitras, C.; Moreno, C.; Sando, R.; Santana, L. F.; Sudhof, T. C.; Gong, B.; Murray, K. D.; Trimmer, J. S.

10.1101/631762 — neuroscience — Posted on 2019-05-09

2500 Quantifying genetic regulatory variation in human populations improves transcriptome analysis in rare disease patients

Mohammadi, P.; Castel, S. E.; Cummings, B. B.; Einson, J.; Sousa, C.; Hoffman, P.; Donkervoort, S.; Mohassel, P.; Foley, R.; Wheeler, H. E.; Im, H. K.; Bonnemann, C. G.; MacArthur, D. G.; Lappalainen, T.

10.1101/632794 — genomics — Posted on 2019-05-09

2501 Early origin and deep conservation of enhancers in animals

Wong, E. S.; Tan, S. Z.; Garside, V.; Vanwalleghem, G.; Gaiti, F.; Scott, E.; McGlinn, E.; Francois, M.; Degnan, B. M.

10.1101/633651 — evolutionary biology — Posted on 2019-05-09

2502 Development of Kinetic Modeling to Assess Multi-functional Vascular Response to Low Dose Radiation in Leukemia

Brooks, J.; Kumar, B.; Zuro, D. M.; Raybuck, J. D.; Madabushi, S. S.; Vishwasrao, P.; Parra, L. E.; Kortylewski, M.; Armstrong, B.; Hui, S. K.

10.1101/633644 — cancer biology — Posted on 2019-05-09

2503 MRGPRX4 is a novel bile acid receptor in cholestatic itch

Yu, H.; Zhao, T.; Liu, S.; Wu, Q.; Johnson, O.; Wu, Z.; Zhuang, Z.; Shi, Y.; He, R.; Yang, Y.; Sun, J.; Wang, X.; Xu, H.; Zeng, Z.; Lei, X.; Luo, W.; Li, Y.

10.1101/633446 — neuroscience — Posted on 2019-05-09

2504 Quantitative visualization of gene expression in Pseudomonas aeruginosa aggregates reveals peak expression of alginate in the hypoxic zone

Jorth, P.; Spero, M.; Newman, D. K.

10.1101/632893 — microbiology — Posted on 2019-05-09

2505 Analysis host-recognition mechanism of staphylococcal kayvirus phiSA039 reveals a novel strategy that protects Staphylococcus aureus against infection by Staphylococcus pseudintermedius Siphoviridae phages

Azam, A. H.; Kadoi, K.; Miyanaga, K.; Usui, M.; Tamura, Y.; Cui, L.; Tanji, Y.

10.1101/632646 — microbiology — Posted on 2019-05-09

2506 The landscape of myeloid and astrocyte phenotypes in acute multiple sclerosis lesions

Park, C.; Ponath, G.; Levine-Ritterman, M.; Bull, E.; Swanson, E.; Segal, B. M.; Pitt, D.

10.1101/632554 — immunology — Posted on 2019-05-09

2507 CRISPR interference at the FAAH-OUT genomic region reduces FAAH expression

Mikaeili, H.; Yeung, C.; Habib, A. M.; Wood, J. N.; Okorokov, A. L.; Cox, J. J.

10.1101/633396 — genetics — Posted on 2019-05-09

2508 Stochastic and coincident control of terminal cell differentiation and cell cycle exit

Zhao, M. L.; Kovary, K. M.; Rabiee, A.; Bahrami-Nejad, Z.; Taylor, B.; Teruel, M. N.

10.1101/632570 — cell biology — Posted on 2019-05-09

2509 Leaf -- An open-source, model-agnostic, data-driven web application for cohort discovery and translational biomedical research

Dobbins, N.; Spital, C.; Black, T.; Morrison, J.; de Veer, B.; Zampino, E.; Harrington, R.; Britt, B.; Stephens, K.; Wilcox, A.; Tarczy-Hornoch, P.; Mooney, S. D.

10.1101/632471 — bioinformatics — Posted on 2019-05-09

2510 Method for Modeling Residual Variance in Biomedical Signals Applied to Transcranial Doppler Ultrasonography Waveforms

Jalaleddini, K.; Thorpe, S. G.; Canac, N.; Dorn, A. Y.; Thibeault, C. M.; Wilk, S. J.; Hamilton, R. B.

10.1101/633669 — bioengineering — Posted on 2019-05-09

2511 Quantifying nerve decussation abnormalities in the optic chiasm

Puzniak, R. J.; Ahmadi, K.; Kaufmann, J.; Gouws, A.; Morland, A. B.; Pestilli, F.; Hoffmann, M. B.

10.1101/633347 — neuroscience — Posted on 2019-05-09

2512 Cholinergic modulation of dentate gyrus processing through dynamic reconfiguration of inhibitory circuits

Ogando, M. B.; Federman, N.; Romano, S. A.; Brum, L. A.; Lanuza, G. M.; Refojo, D.; Marin-Burgin, A.

10.1101/632497 — neuroscience — Posted on 2019-05-09

2513 Population genetic simulation study of power in association testing across genetic architectures and study designs

Tong, D. M. H.; Hernandez, R. D.

10.1101/632786 — genomics — Posted on 2019-05-09

2514 AP-1 Imprints a Reversible Transcriptional Program of Senescent Cells

Martinez Zamudio, R. I.; Roux, P.-F.; Freitas, J. A.; Robinson, L.; Dore, G.; Sun, B.; Gil, J.; Herbig, U.; Bischof, O.

10.1101/633594 — genomics — Posted on 2019-05-09

2515 TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools

Monat, C.; Padmarasu, S.; Lux, T.; Wicker, T.; Gundlach, H.; Himmelbach, A.; Ens, J.; Li, C.; Muehlbauer, G.; Schulman, A.; Waugh, R.; Braumann, I.; Pozniak, C.; Scholz, U.; Mayer, K.; Spannagl, M.; Stein, N.; Mascher, M.

10.1101/631648 — genomics — Posted on 2019-05-09

2516 Intra-individual changes in the frequency of mosaic loss of chromosome Y over time estimated with a new method

10.1101/631713 — genetics — Posted on 2019-05-09

2517 Invasion and extinction dynamics of mating types under facultative sexual reproduction

Czuppon, P.; Constable, G. W. A.

10.1101/632927 — evolutionary biology — Posted on 2019-05-09

2518 Biogeographic patterns of ectomycorrhizal fungal communities associated with Castanopsis sieboldii across the Japanese archipelago

Matsuoka, S.; Iwasaki, T.; Sugiyama, Y.; Kawaguchi, E.; Doi, H.; Osono, T.

10.1101/632901 — ecology — Posted on 2019-05-09

2519 FGF signalling plays similar roles in development and regeneration of the skeleton in the brittle star Amphiura filiformis

Czarkwiani, A.; Dylus, D. V.; Carballo, L.; Oliveri, P.

10.1101/632968 — developmental biology — Posted on 2019-05-09

2520 Caveolae set levels of epithelial monolayer tension to eliminate tumor cells

Teo, J. L. C.; Gomez, G. A.; Noordstra, I.; Verma, S.; Tomatis, V.; Acharya, B. R.; Balasubramaniam, L.; Katsuno-Kambe, H.; Templin, R.; McMahon, K.-A.; Ju, R. J.; Stebhens, S. J.; Ladoux, B.; Parton, R. G.; Yap, A. S.

10.1101/632802 — cell biology — Posted on 2019-05-09

2521 Effect of Thrombospondin-4 on Pro-inflammatory Phenotype Differentiation and Apoptosis in Macrophages.

Rahman, M. T.; Muppala, S.; Wu, J.; Krukovets, I.; Solovjev, D.; Verbovetskiy, D.; Plow, E. F.; Stenina-Adognravi, O.

10.1101/633537 — cell biology — Posted on 2019-05-09

2522 Regulation of tau’s proline rich region by its N-terminal domain

McKibben, K.; Rhoades, E.

10.1101/633420 — biophysics — Posted on 2019-05-09

2523 B-SIDER: Computational algorithm for the design of complementary β-sheet sequences

Yu, T.-G.; Kim, H.-S.; Choi, Y.

10.1101/631069 — bioinformatics — Posted on 2019-05-09

2524 Simulating bout-and-pause patterns with reinforcement learning

Yamada, K.; Kanemura, A.

10.1101/632745 — animal behavior and cognition — Posted on 2019-05-09

2525 The dynamics of stem and crown groups

Budd, G. E.; Mann, R. P.

10.1101/633008 — paleontology — Posted on 2019-05-09

2526 Physiotherapist confidence level in mobilising stroke patients after decompressive hemicraniectomy: are helmets useful?

Budhdeo, S.; Meek, T.; Cosco, T.; Turaga, S.; Chari, A.; Sharma, N.

10.1101/632604 — neuroscience — Posted on 2019-05-09

2527 Quantitative analysis and medium components optimizing for culturing a fastidious bacterium Christensenella minuta

Xiao, H.; Liu, B.; Yong, J.; Zhou, H.

10.1101/632836 — microbiology — Posted on 2019-05-09

2528 Systematic comparative analysis of single cell RNA-sequencing methods

10.1101/632216 — genomics — Posted on 2019-05-09

2529 Functional tunability from a distance: Rheostat positions influence allosteric coupling between two distant binding sites

Wu, T.; Swint-Kruse, L.; Fenton, A. W.

10.1101/632422 — biochemistry — Posted on 2019-05-09

2530 A customizable tablet app for hand movement research outside the lab

Matic, A.; Gomez-Marin, A.

10.1101/633305 — animal behavior and cognition — Posted on 2019-05-09

2531 A labeled-line for cold from the periphery to the parabrachial nucleus

Ross, S. E.; Hachisuka, J.; Koerber, H. R.

10.1101/633115 — neuroscience — Posted on 2019-05-09

2532 CTCF controls imprinted gene activity at the mouse Dlk1-Dio3 and Igf2- H19 domains by modulating allele-specific sub-TAD structure

Lleres, D.; Moindrot, B.; Pathak, R.; Piras, V.; Matelot, M.; Pignard, B.; Marchand, A.; Poncelet, M.; Perrin, A.; Tellier, V.; Feil, R.; Noordermeer, D.

10.1101/633065 — molecular biology — Posted on 2019-05-09

2533 Differential impact of self and environmental antigens on the ontogeny and maintenance of CD4+ T cell memory

Hogan, T.; Nowicka, M.; Cownden, D.; Pearson, C.; Yates, A.; Seddon, B.

10.1101/632281 — immunology — Posted on 2019-05-09

2534 Phylogeography and Molecular Species Delimitation Reveal Cryptic and Incipient Speciation in Synchronous Flashing Fireflies (Coleoptera: Lampyridae) of Southeast Asia

Jusoh, W. F. A.; Ballantyne, L.; Chan, K. O.

10.1101/632612 — evolutionary biology — Posted on 2019-05-09

2535 Fishing for mammals: landscape-level monitoring of terrestrial and semi-aquatic communities using eDNA from lotic ecosystems

Sales, N. G.; McKenzie, M.; Drake, J.; Harper, L.; Browett, S.; Coscia, I.; Wangensteen, O.; Baillie, C.; Bryce, E.; Dawson, D.; Ochu, E.; Hanfling, B.; Lawson Handley, L.; Mariani, S.; Lambin, X.; Sutherland, C.; McDevitt, A.

10.1101/629758 — ecology — Posted on 2019-05-09

2536 Cell cycle regulators control mesoderm specification in human pluripotent stem cells

Yiangou, L.; Grandy, R. A.; Sinha, S.; Vallier, L.

10.1101/632307 — developmental biology — Posted on 2019-05-09

2537 DYRK2 activates heat shock factor 1 promoting resistance to proteotoxic stress and tumour growth in triple-negative breast cancer

Moreno, R.; Banerjee, S.; Jackson, A. W.; Quinn, J.; Baillie, G.; Dixon, J. E.; Dinkova-Kostova, A. T.; Edwards, J.; de la Vega, L.

10.1101/633560 — cancer biology — Posted on 2019-05-09

2538 PIME: a package for discovery of novel differences among microbial communities

Roesch, L.; Dobbler, P.; Pylro, V.; Kolaczkowski, B.; Drew, J.; Triplett, E.

10.1101/632182 — bioinformatics — Posted on 2019-05-09

2539 Multiplex RNA single molecule FISH of inducible mRNAs in single yeast cells

Li, G.; Neuert, G.

10.1101/631622 — systems biology — Posted on 2019-05-09

2540 Bridging traditional evolutionary game theory and metabolic models for predicting Nash equilibrium of microbial metabolic interactions

Cai, J.; Tan, T.; Chan, S. H. J.

10.1101/623173 — systems biology — Posted on 2019-05-09

2541 Medicago truncatula Ferroportin2 mediates iron import into nodule symbiosomes

Escudero, V.; Abreu, I.; Tejada-Jimenez, M.; Rosa-Nunez, E.; Quintana, J.; Prieto, R. I.; Larue, C.; Wen, J.; Villanova, J.; Mysore, K. S.; Arguello, J. M.; Castillo-Michel, H.; Imperial, J.; Gonzalez-Guerrero, M.

10.1101/630699 — plant biology — Posted on 2019-05-09

2542 Alpha/beta power decreases track the fidelity of stimulus-specific information

Griffiths, B. J.; Mayhew, S. D.; Mullinger, K. J.; Jorge, J.; Charest, I.; Wimber, M.; Hanslmayr, S.

10.1101/633107 — neuroscience — Posted on 2019-05-09

2543 Disentangling neuronal inhibition and inhibitory pathways in the lateral habenula

Webster, J. F.; Vroman, R.; Sakata, S.; Wozny, C.

10.1101/633271 — neuroscience — Posted on 2019-05-09

2544 TractoFlow: A robust, efficient and reproducible diffusion MRI pipeline leveraging Nextflow & Singularity

Theaud, G.; Houde, J.-C.; Bore, A.; Rheault, F.; Morency, F.; Descoteaux, M.

10.1101/631952 — neuroscience — Posted on 2019-05-09

2545 CRISPR adenine and cytosine base editors with reduced RNA off-target activities

Grunewald, J.; Zhou, R.; Iyer, S.; Lareau, C. A.; Garcia, S. P.; Aryee, M. J.; Joung, J. K.

10.1101/631721 — molecular biology — Posted on 2019-05-09

2546 Conditional silencing of H-2Db class I molecule expression on dendritic cells modulates the protective and pathogenic kinetics of virus-antigen specific CD8 T cell responses during Theiler’s Virus infection

Tritz, Z. P.; Orozco, R. C.; Malo, C. S.; Yokanovich, L. T.; Ayasoufi, K.; Fain, C. E.; Khadka, R. H.; Settell, M. L.; Hansen, M. J.; Jin, F.; Johnson, A. J.

10.1101/632265 — immunology — Posted on 2019-05-09

2547 Sustained perturbation in functional connectivity induced by cold pain

Makovac, E.; Dipasquale, O.; Jackson, J. B.; Medina, S.; O'Daly, O.; O'Muircheartaigh, J.; de Lara Rubio, A.; Williams, S. C.; McMahon, S. B.; Howard, M. A.

10.1101/633263 — neuroscience — Posted on 2019-05-09

2548 Transcriptome Profile Analysis of Twisted Leaf Disease Response in Susceptible Sugarcane with Narenga porphyrocoma Genetic Background

Wei, J.; Xiu, Z.; Ou, H.; Chen, J.; Jiang, H.; Zhang, X.; Zhang, R.; Zhou, H.; Gui, Y.; Li, H.; Li, Y.; Yang, R.; Huang, D.; Tan, H.; Liu, X.

10.1101/633081 — genomics — Posted on 2019-05-09

Amad, A.; Radua, J.; Vaiva, G.; Williams, S. C.; Fovet, T.

10.1101/633248 — neuroscience — Posted on 2019-05-09

2550 Systematic discovery of Short Linear Motifs decodes calcineurin phosphatase signaling

Wigington, C. P.; Roy, J.; Damle, N. P.; Yadav, V. K.; Blikstad, C.; Resch, E.; Wong, C. J.; Mackay, D. R.; Wang, J. T.; Krystkowiak, I.; Stearns, T.; Gingras, A.-C.; Ullman, K. S.; Ivarsson, Y.; Davey, N. E.; Cyert, M. S.

10.1101/632547 — cell biology — Posted on 2019-05-09

2551 Single-cell transcriptomes of the aging human skin reveal loss of fibroblast priming

Sole-Boldo, L.; Raddatz, G.; Schuetz, S.; Mallm, J.-P.; Rippe, K.; Lonsdorf, A. S.; Rodriguez-Paredes, M.; Lyko, F.

10.1101/633131 — cell biology — Posted on 2019-05-09

2552 Anti-microbial immunity is impaired in COPD patients with frequent exacerbations

Singanayagam, A.; Loo, S.-L.; Calderazzo, M.; Finney, L. J.; Trujillo-Torralbo, M.-B.; Bakhsoliani, E.; Girkin, J. L.; Veerati, P. C.; Pathinayake, P. S.; Nichol, K. S.; Reid, A. T.; Footitt, J.; Johnston, S. L.; Bartlett, N.; Mallia, P.

10.1101/632372 — immunology — Posted on 2019-05-09

2553 Revealing architectural order with polarized light imaging and deep neural networks

Guo, S.-M.; Krishnan, A. P.; Folkesson, J.; Ivanov, I.; Chhun, B.; Cho, N.; Leonetti, M.; Mehta, S. B.

10.1101/631101 — biophysics — Posted on 2019-05-09

2554 Nuclear Expression and DNA Binding Capacity of Receptor for Advanced Glycation End Products in Renal Tissue

Harcourt, B. E.; McClelland, A. D.; Yamamoto, H.; Yonekura, H.; Yamamoto, Y.; Penfold, S. A.; Fotheringham, A. K.; Vesey, D. A.; Johnson, D. W.; Coughlan, M. T.; Cooper, M. E.; Kantharidis, P.; Forbes, J. M.

10.1101/632596 — molecular biology — Posted on 2019-05-09

2555 Boosting with ALVAC-HIV and AIDSVAX B/E enhances Env constant region 1 and 2 antibody-dependent cellular cytotoxicity

Easterhoff, D.; Pollara, J.; Luo, K.; Tolbert, W. D.; Young, B.; Mielke, D.; Jha, S.; O'Connell, R. J.; Vasan, S.; Kim, J.; Michael, N.; Excler, J.-L.; Robb, M. L.; Rerks-Ngarm, S.; Kaewkungwal, J.; Pitisuttithum, P.; Nitayaphan, S.; Sinangil, F.; Tartaglia, J.; Phogat, S.; Kepler, T.; Alam, S. M.; Wiehe, K. J.; Saunders, K. O.; Montefiori, D.; Tomaras, G. D.; Moody, M. A.; Pazgier, M.; Haynes, B. F.; Ferrari, G.

10.1101/632844 — immunology — Posted on 2019-05-09

2556 Validation study of a diffusion MRI derived vessel density biomarker for detecting viral hepatitis-b induced liver fibrosis

Wang, Y.-X.; Xiao, B.-H.; Wang, L.-F.; Qiu, S.-W.; Yun, Y.-X.; Huang, H.

10.1101/633024 — biophysics — Posted on 2019-05-09

2557 Histone Tail Dynamics in Partially Disassembled Nucleosomes During Chromatin Remodeling

Kameda, T.; Awazu, A.; Togashi, Y.

10.1101/633370 — biophysics — Posted on 2019-05-09

2558 Do neutral protein positions really exist? A case study with allostery in human liver pyruvate kinase

Martin, T. A.; Wu, T.; Tang, Q.; Dougherty, L. L.; Parente, D. J.; Swint-Kruse, L.; Fenton, A. W.

10.1101/632562 — biochemistry — Posted on 2019-05-09

2559 Daily rhythms in lactate metabolism in the medial prefrontal cortex of mouse: Effects of light and aging

Wallace, N.; Pollard, F.; Savenkova, M.; Karatsoreos, I. N.

10.1101/632521 — neuroscience — Posted on 2019-05-09

2560 Liquid condensation drives telomere clustering during ALT

Zhang, H.; Liu, M.; Dilley, R.; Chenoweth, D. M.; Greenberg, R. A.; Lampson, M. A.

10.1101/633040 — cancer biology — Posted on 2019-05-09

2561 Bioorthogonal protein-DNA conjugation methods for force spectroscopy

Synakewicz, M.; Bauer, D.; Rief, M.; Itzhaki, L. S.

10.1101/631572 — biophysics — Posted on 2019-05-09

2562 Inferring novel lncRNA associated with Ventricular septal defect by DNA methylation interaction network

Zhang, M.; Gu, Y.; Su, M.; Zhang, S.; Chen, C.; Lv, W.; Zhang, Y.

10.1101/459677 — developmental biology — Posted on 2019-05-09

2563 Mutational mimics of allosteric effectors: a genome editing design to validate allosteric drug targets

Tang, Q.; Villar, M. T.; Artigues, A.; Thyfault, J. P.; Apte, U.; Zhu, H.; Peterson, K. R.; Fenton, A. W.

10.1101/632232 — biochemistry — Posted on 2019-05-09

2564 Microbiome composition shapes rapid genomic adaptation of Drosophila melanogaster

Rudman, S.; Greenblum, S. I.; Hughes, R. C.; Rajpurohit, S.; Kiratli, O.; Lowder, D. B.; Lemmon, S. G.; Petrov, D. A.; Chaston, J.; Schmidt, P.

10.1101/632257 — evolutionary biology — Posted on 2019-05-09

2565 The phosphatase inhibitor Sds23 regulates cell division symmetry in fission yeast

Schutt, K. L.; Moseley, J. B.

10.1101/632349 — cell biology — Posted on 2019-05-09

2566 Nanoscale spatial dependence of avidity in an IgG1 antibody

Jendroszek, A.; Kjaergaard, M.

10.1101/632323 — biophysics — Posted on 2019-05-09

2567 Shake-it-off: A simple ultrasonic cryo-EM specimen preparation device

Rubinstein, J. L.; Guo, H.; Ripstein, Z. A.; Haydaroglu, A.; Au, A.; Yip, C. M.; Di Trani, J. M.; Benlekbir, S.; Kwok, T.

10.1101/632125 — biophysics — Posted on 2019-05-09

2568 Control of density and composition in an engineered two-member bacterial community

McCardell, R. D.; Pandey, A.; Murray, R. M.

10.1101/632174 — synthetic biology — Posted on 2019-05-09

2569 Strategies for building computing skills to support microbiome analysis: a five-year perspective from the EDAMAME workshop

Shade, A.; Dunivin, T. K.; Choi, J.; Teal, T.; Howe, A. C.

10.1101/631267 — scientific communication and education — Posted on 2019-05-09

2570 Chloroplast nucleoids are highly dynamic in ploidy, number, and structure during angiosperm leaf development

Greiner, S.; Golczyk, H.; Malinova, I.; Pellizzer, T.; Bock, R.; Boerner, T.; Herrmann, R. G.

10.1101/632240 — plant biology — Posted on 2019-05-09

2571 Evolutionary stories told by one protein family: ERM phylogeny in metazoans

Shabardina, V.; Kashima, Y.; Suzuki, Y.; Makalowski, W.

10.1101/631770 — evolutionary biology — Posted on 2019-05-09

2572 DEAD-box protein family member DDX28 is a negative regulator of HIF-2α and eIF4E2-directed hypoxic translation

Evagelou, S. L.; Bebenek, O.; Specker, E. J.; Uniacke, J.

10.1101/632331 — biochemistry — Posted on 2019-05-09

2573 Contact sensitivity in paediatric patients with atopic dermatitis in Laos

Wootton, C. I.; Sodaly, M. K.; Billamay, S. X.; English, J.; Mayfong, M.

10.1101/631911 — epidemiology — Posted on 2019-05-09

2574 Patch Testing in Lao medical students

Wootton, C. I.; Soukavong, M.; Kidoikhammouan, S.; Samountry, B.; English, J. S. C.; Mayfong, M.

10.1101/631903 — epidemiology — Posted on 2019-05-09

2575 High-throughput 16S rRNA gene sequencing reveals gut microbial changes in 6-hydroxydopamine-induced Parkinsons disease mice

Choi, J. G.; Huh, E.; Kim, N.; Kim, D.-H.; Oh, M. S.

10.1101/633230 — neuroscience — Posted on 2019-05-09

2576 Protein secondary structure prediction with context convolutional neural network

Long, S.; Tian, P.

10.1101/633172 — bioinformatics — Posted on 2019-05-09

2577 A new Bayesian methodology for nonlinear model calibration in Computational Systems Biology

Bianconi, F.; Tomassoni, L.; Antonini, C.; Valigi, P.

10.1101/633180 — systems biology — Posted on 2019-05-09

2578 Fruit performance of kiwifruit in the loess area of Northwest China

Guo, k.; Guo, Z.; Guo, Y.; qiao, g.; Kaibinguo, Zhen Guo, Yun Guo, Guangqiao,

10.1101/633206 — physiology — Posted on 2019-05-09

2579 Kinetic characteristics of propofol-induced inhibition of electron-transfer chain and fatty acid oxidation in human and rodent skeletal and cardiac muscles

Duska, F.; Urban, T.; Waldauf, P.; Krajcova, A.; Jiroutkova, K.; Halacova, M.; Dzupa, V.; Janousek, L.; Pokorna, E.

10.1101/633156 — pharmacology and toxicology — Posted on 2019-05-09

2580 Capillary hemoglobin electrophoresis of healthy and anemic dogs: quantification, validation, and reference intervals of hemoglobin fractions

Oikonomidis, I. L.; Tsouloufi, T. K.; Mylonakis, M. E.; Kritsepi-Konstantinou, M.

10.1101/633198 — pathology — Posted on 2019-05-09

2581 Environmental niche forecasts of globally threatened Yellow-throated Bulbul, Pycnonotus xantholaemus for conservation prospects in the Deccan peninsula, India

Vasudevan, K.; Jha, A.

10.1101/633214 — ecology — Posted on 2019-05-09

2582 Hierarchical transcriptional control regulates Plasmodium falciparum sexual differentiation

van Biljon, R.; van Wyk, R.; Painter, H.; Orchard, L.; Reader, J.; Niemand, J.; Llinas, M.; Birkholtz, L.-M.

10.1101/633222 — biochemistry — Posted on 2019-05-09

2583 Title: Risk factors for postoperative meningitis after microsurgery for vestibular schwannoma

Huang, B.; Ren, Y.; Wang, C.; Lan, Z.; Hui, X.; Liu, W.; Zhang, Y.

10.1101/633149 — neuroscience — Posted on 2019-05-09

2584 A competence-regulated toxin-antitoxin system in Haemophilus influenzae

Findlay Black, H.; Mastromatteo, S.; Sinha, S.; Ehrlich, R.; Nislow, C.; Chang Mell, J.; Redfield, R. J.

10.1101/633164 — microbiology — Posted on 2019-05-09

2585 Reconciling Base-Pair Resolution 5-methylcytosine and 5-hydroxymethylcytosine Data in Neuroepigenetics

Kochmanski, J.; Savonen, C.; Bernstein, A. I.

10.1101/630772 — genetics — Posted on 2019-05-08

2586 Region-specific magnetic fields structure sea turtle populations

Cameron, S. J. K.; Baltazar-Soares, M.; Eizaguirre, C.

10.1101/630152 — evolutionary biology — Posted on 2019-05-08

2587 Influence of Arm Swing on Cost of Transport during Walking

De Graaf, M. L.; Hubert, J.; Houdijk, H.; Bruijn, S. M.

10.1101/426775 — neuroscience — Posted on 2019-05-08

2588 Single cell transcriptomics reveals opioid usage evokes widespread suppression of antiviral genes

Karagiannis, T. T.; Cleary, J. P.; Martin, N. G.; Nelson, E. C.; Cheng, C. S.

10.1101/630574 — genomics — Posted on 2019-05-08

2589 A role for Hypoxia Inducible Factor 1a (HIF1a) in intermittent hypoxia-dependent changes to spatial memory and synaptic plasticity

Arias-Cavieres, A.; Khuu, M. A.; Nwakudu, C. U.; Barnard, J. E.; Dalgin, G.; Garcia, A. J.

10.1101/595975 — neuroscience — Posted on 2019-05-08

2590 Perturbations of the ZED1 Pseudokinase Activate Plant Immunity

Bastedo, D. P.; Khan, M.; Martel, A.; Seto, D.; Kireeva, I.; Zhang, J.; Masud, W.; Millar, D.; Lee, J. Y.; Lee, A. H.-Y.; Gong, Y.; Santos-Severino, A.; Guttman, D. S.; Desveaux, D.

10.1101/531665 — molecular biology — Posted on 2019-05-08

2591 Draft Genome Sequence of Candida auris Strain LOM, a Human Clinical Isolate from Greater Metropolitan Houston, Texas

Long, S. W.; Olsen, R.; Nguyen, H. A. T.; Ojeda Saavedra, M.; Musser, J. M.

10.1101/629741 — microbiology — Posted on 2019-05-08

2592 Carbon monoxide dehydrogenases enhance bacterial survival by oxidising atmospheric CO

Cordero, P. R. F.; Bayly, K.; Leung, P. M.; Huang, C.; Islam, Z. F.; Schittenhelm, R. B.; King, G. M.; Greening, C.

10.1101/628081 — microbiology — Posted on 2019-05-08

2593 Interacting Networks Associated with Parent-of-Origin Effects on Metabolic Traits

Macias-Velasco, J. F.; St. Pierre, C. L.; Wayhart, J. P.; Yin, L.; Spears, L.; Miranda, M. A.; Funai, K.; Cheverud, J. M.; Semenkovich, C. F.; Lawson, H. A.

10.1101/579748 — genomics — Posted on 2019-05-08

2594 Context-dependent probability estimation and its neurocomputational substrates

Lin, W.-H.; Gardner, J.; Wu, S.-W.

10.1101/624163 — neuroscience — Posted on 2019-05-08

2595 Reassessment of the basis of cell size control based on analysis of cell-to-cell variability

Facchetti, G.; Knapp, B.; Chang, F.; Howard, M.

10.1101/548545 — cell biology — Posted on 2019-05-08

2596 Time-resolved compound repositioning predictions on a text-mined knowledge network

Mayers, M. D.; Li, T. S.; Queralt-Rosinach, N.; Su, A. I.

10.1101/625459 — bioinformatics — Posted on 2019-05-08

2597 Proteomics Standards Initiative Extended FASTA Format (PEFF)

Binz, P.-A.; Shofstahl, J.; Vizcaino, J. A.; Barsnes, H.; Chalkley, R. J.; Menschaert, G.; Alpi, E.; Clauser, K.; Eng, J. K.; Lane, L.; Seymour, S. L.; Sanchez, L. F. H.; Mayer, G.; Eisenacher, M.; Perez-Riverol, Y.; Kapp, E. A.; Mendoza, L.; Baker, P. R.; Collins, A.; Van Den Bossche, T.; Deutsch, E. W.

10.1101/624494 — bioinformatics — Posted on 2019-05-08

2598 Constant sub-second cycling between representations of possible futures in the hippocampus

Kay, K.; Chung, J. E.; Sosa, M.; Schor, J. S.; Karlsson, M. P.; Larkin, M. C.; Liu, D. F.; Frank, L. M.

10.1101/528976 — neuroscience — Posted on 2019-05-08

2599 A Pandas complex adapted for piRNA-guided transposon silencing

Zhao, K.; Cheng, S.; Miao, N.; Xu, P.; Lu, X.; Wang, M.; Zhang, Y.; Yuan, X.; Liu, W.; Lu, X.; Ouyang, X.; Zhou, P.; Gu, J.; Zhang, Y.; Qiu, D.; Wang, S.; Jin, Z.; Wan, Y.; Ma, J.; Cheng, H.; Huang, Y.; Yu, Y.

10.1101/608273 — molecular biology — Posted on 2019-05-08

2600 Airway Gene-Expression Classifiers for Respiratory Syncytial Virus (RSV) Disease Severity in Infants

Wang, L.; Chu, C.-Y.; McCall, M. N.; Slaunwhite, C.; Holden-Wiltse, J.; Corbett, A.; Falsey, A. R.; Topham, D. J.; Caserta, M. T.; Mariani, T. J.; Walsh, E. E.; Qiu, X.

10.1101/628701 — immunology — Posted on 2019-05-08

2601 CNOT1 mediates phosphorylation via Protein kinase A on the circadian clock

Zhang, Y.; Qin, H.; Feng, Y.; Gao, P.; Zhong, Y.; Tan, Y.; Wang, H.; Xu, Y.; Takahashi, J. S.; Huang, G.

10.1101/630897 — developmental biology — Posted on 2019-05-08

2602 LUXendins reveal endogenous glucagon-like peptide-1 receptor distribution and dynamics

Ast, J.; Arvaniti, A.; Fine, N. H. F.; Nasteska, D.; Ashford, F. B.; Stamataki, Z.; Koszegi, Z.; Bacon, A.; Trapp, S.; Jones, B. J.; Hastoy, B.; Tomas, A.; Reissaus, C.; Linnemann, A. K.; D'Este, E.; Calebiro, D.; Johnsson, K.; Podewin, T.; Broichhagen, J.; Hodson, D. J.

10.1101/557132 — cell biology — Posted on 2019-05-08

2603 A DNA recognition code for probing the in vivo functions of zinc finger transcription factors at domain resolution

Dogan, B.; Kailasam, S.; Corchado, A. H.; Najafabadi, H. S.

10.1101/630756 — bioinformatics — Posted on 2019-05-08

2604 A genetically validated approach to detect inorganic polyphosphates in plants.

Zhu, J.; Loubery, S.; Broger, L.; Lorenzo-Orts, L.; Utz-Pugin, A.; Chang, Y.-T.; Hothorn, M.

10.1101/630129 — plant biology — Posted on 2019-05-08

2605 Environmental DNA (eDNA) metabarcoding of pond water as a tool to survey conservation and management priority mammals

Harper, L. R.; Lawson Handley, L.; Carpenter, A. I.; Ghazali, M.; Di Muri, C.; Macgregor, C. J.; Logan, T. W.; Law, A.; Breithaupt, T.; Read, D. S.; McDevitt, A.; Hänfling, B.

10.1101/546218 — molecular biology — Posted on 2019-05-08

2606 A mechanism to minimize errors during non-homologous end joining

Stinson, B. M.; Moreno, A. T.; Walter, J. C.; Loparo, J. J.

10.1101/563197 — molecular biology — Posted on 2019-05-08

2607 No evidence for disruption of global patterns of nest predation in shorebirds

Bulla, M.; Reneerkens, J.; Weiser, E. L.; Sokolov, A.; Taylor, A. R.; Sittler, B.; McCaffery, B. J.; Ruthrauff, D. R.; Catlin, D. H.; Payer, D. C.; Ward, D. H.; Solovyeva, D. V.; Santos, E. S.; Rakhimberdiev, E.; Nol, E.; Kwon, E.; Brown, G. S.; Hevia, G. D.; Gates, H. R.; Johnson, J. A.; van Gils, J. A.; Hansen, J.; Lamarre, J.-F.; Rausch, J.; Conklin, J. R.; Liebezeit, J.; Bety, J.; Lang, J.; Alves, J. A.; Fernandez-Elipe, J.; Michael-Exo, K.; Bollache, L.; Bertellotti, M.; Giroux, M.-A.; van de Pol, M.; Johnson, M.; Boldenow, M. L.; Valcu, M.; Soloviev, M.; Sokolova, N.; Senner, N. R.; Leco

10.1101/601047 — ecology — Posted on 2019-05-08

2608 DreamDMI: a tool for Disease Module Identification in molecular networks

Tomasoni, M.; Choobdar, S.; Marbach, D.; Gomez, S.; Crawford, J.; Zhang, W.; Bergmann, S.

10.1101/611418 — bioinformatics — Posted on 2019-05-08

2609 In situ measurement of absolute concentrations by Normalized Raman Imaging

Oh, S.; Lee, C.; Fu, D.; Yang, W.; Li, A.; Ran, C.; Yin, W.; Tabin, C.; Xie, X. S.; Kirschner, M. W.

10.1101/629543 — bioengineering — Posted on 2019-05-08

2610 Plasmids for independently tunable, low-noise expression of two genes

Silva, J. P. N.; Lopes, S. V.; Grilo, D. J.; Hensel, Z.

10.1101/515940 — synthetic biology — Posted on 2019-05-08

2611 Cellular and molecular characterization of multiplex autism in human induced pluripotent stem cell-derived neurons

Lewis, E. M. A.; Meganathan, K.; Baldridge, D.; Gontarz, P.; Zhang, B.; Bonni, A.; Constantino, J.; Kroll, K. L.

10.1101/620807 — neuroscience — Posted on 2019-05-08

2612 The time-course of component processes of selective attention

Wen, T.; Duncan, J.; Mitchell, D. J.

10.1101/511022 — neuroscience — Posted on 2019-05-08

2613 Induced illusory body ownership in Borderline Personality Disorder

Neustadter, E. S.; Fineberg, S. K.; Leavitt, J.; Carr, M. M.; Corlett, P. R.

10.1101/628131 — neuroscience — Posted on 2019-05-08

2614 Imaging Oxysterols in Mouse Brain by On-Tissue Derivatisation-Robotic Liquid Micro-Extraction Surface Analysis-Liquid Chromatography Mass Spectrometry

Griffiths, W. J.; Yutuc, E.; Angelini, R.; Baumert, M.; Mast, N.; Pikuleva, I.; Newton, J.; Clench, M. R.; Skibinski, D.; Howell, O.; Wang, Y.

10.1101/450973 — neuroscience — Posted on 2019-05-08

2615 Diversity and biogeography of SAR11 bacteria from the Arctic Ocean

Kraemer, S.; Ramachandran, A.; Colatriano, D.; Lovejoy, C.; Walsh, D.

10.1101/517433 — microbiology — Posted on 2019-05-08

2616 Diverse conjugative elements silence natural transformation in Legionella species

Durieux, I.; Ginevra, C.; Attaiech, L.; Picq, K.; Juan, P.-A.; Jarraud, S.; Charpentier, X.

10.1101/623074 — microbiology — Posted on 2019-05-08

2617 Analysis of genetic networks regulating refractive eye development in collaborative cross progenitor strain mice reveals new genes and pathways underlying human myopia

Tkatchenko, T. V.; Shah, R. L.; Nagasaki, T.; Tkatchenko, A. V.

10.1101/530766 — genetics — Posted on 2019-05-08

2618 Genomic landscape of tumor-host interactions with differential prognostic and predictive connotations

Roelands, J.; Hendrickx, W.; Kuppen, P. J. K.; Mall, R.; Zoppoli, G.; Saad, M.; Halliwill, K.; Curigliano, G.; Rinchai, D.; Decock, J.; Delogu, L.; Turan, T.; Samayoa, J.; Chouchane, L.; Wang, E.; Finetti, P.; Bertucci, F.; Miller, L.; Galon, J.; Marincola, F.; Ceccarelli, M.; Bedognetti, D.

10.1101/546069 — cancer biology — Posted on 2019-05-08

2619 Sensory Loss Enhances Multisensory Integration Performance

Peter, M. G.; Porada, D. K.; Regenbogen, C.; Olsson, M. J.; Lundstrom, J. N.

10.1101/483586 — neuroscience — Posted on 2019-05-08

2620 Reducing variability in along-tract analysis with diffusion profile realignment

St-Jean, S.; Chamberland, M.; Viergever, M. A.; Leemans, A.

10.1101/541920 — neuroscience — Posted on 2019-05-08

2621 Evaluation of DNA extraction methods on individual helminth egg and larval stages for whole genome sequencing

Doyle, S. R.; Sankaranarayanan, G.; Allan, F.; Berger, D.; Jimenez Castro, P. D.; Collins, J. B.; Crellen, T.; Durque-Correa, M. A.; Ellis, P.; Jaleta, T. G.; Laing, R.; Maitland, K.; McCarthy, C.; Moundai, T.; Softley, B.; Thiele, E.; Ouakou, P. T.; Tushabe, J. V.; Webster, J. P.; Weiss, A. J.; Lok, J. B.; Devaney, E.; Kaplan, R. M.; Cotton, J. A.; Berriman, M.; Holroyd, N.

10.1101/616672 — genomics — Posted on 2019-05-08

2622 Transcriptomic basis and evolution of ant nurse-larval social regulatory interactions

Warner, M. R.; Mikheyev, A. S.; Linksvayer, T. A.

10.1101/514356 — evolutionary biology — Posted on 2019-05-08

2623 Active cargo positioning in antiparallel transport networks

Richard, M.; Blanch-Mercader, C.; Ennomani, H.; Cao, W.; De La Cruz, E.; Joanny, J.-F.; Jülicher, F.; Blanchoin, L.; Martin, P.

10.1101/512863 — biophysics — Posted on 2019-05-08

2624 CRK2 enhances salt tolerance by regulating callose deposition in connection with PLDα1

Hunter, K.; Kimura, S.; Rokka, A.; Tran, C.; Toyota, M.; Kukkonen, J.; Wrzaczek, M.

10.1101/487009 — plant biology — Posted on 2019-05-08

2625 The functional reach of the hippocampal memory system to the oculomotor system.

Ryan, J. D.; Shen, K.; Kacollja, A.; Tian, H.; Griffiths, J.; Bezgin, G.; McIntosh, R.

10.1101/303511 — neuroscience — Posted on 2019-05-08

2626 Single cell RNAseq provides a molecular and cellular cartography of changes to the human endometrium through the menstrual cycle

Wang, W.; Vilella, F.; Alama, P.; Moreno, I.; Mignardi, M.; Pan, W.; Simon, C.; Quake, S. R.

10.1101/350538 — genomics — Posted on 2019-05-08

2627 Evolutionary forecasting of phenotypic and genetic outcomes of experimental evolution in Pseudomonas

Lind, P. A.

10.1101/342261 — evolutionary biology — Posted on 2019-05-08

2628 Heterozygote advantage can explain the extraordinary diversity of immune genes

Siljestam, M.; Rueffler, C.

10.1101/347344 — evolutionary biology — Posted on 2019-05-08

2629 Unbiased identification of trans regulators of ADAR and A-to-I RNA editing

Freund, E. C.; Sapiro, A. L.; Li, Q.; Linder, S. E.; Moresco, J. J.; Yates, J.; Li, J. B.

10.1101/631200 — genetics — Posted on 2019-05-08

2630 Ecosystem services at risk from declining taxonomic and interaction diversity in a tropical forest

Salcido, D.; Forister, M.; Garcia, H.; Dyer, L. A.

10.1101/631028 — ecology — Posted on 2019-05-08

2631 Size- and sex-specific predation on dung flies by amphibian and arthropod predators - size match matters

Blanckenhorn, W. U.; Cozzi, G.; Jaeggli, G.; Busso, J. P.

10.1101/631549 — ecology — Posted on 2019-05-08

2632 Physiological adaptations of leaf litter microbial communities to long-term drought

Malik, A. A.; Swenson, T.; Weihe, C.; Morrison, E.; Martiny, J. B.; Brodie, E. L.; Northen, T. R.; Allison, S. D.

10.1101/631077 — microbiology — Posted on 2019-05-08

2633 Kinetics of HTLV-1 reactivation from latency quantified by single-molecule RNA FISH and stochastic modelling

Miura, M.; Dey, S.; Singh, A.; Rueda, D.; Bangham, C.

10.1101/631697 — microbiology — Posted on 2019-05-08

2634 Germline murine immunoglobulin IGHV genes in wild-derived and classical inbred strains: a comparison

Watson, C. T.; Kos, J. T.; Gibson, W. S.; Busse, C. E.; Newman, L.; Deikus, G.; Smith, M. L.; Jackson, K. J.; Colins, A. M.

10.1101/631754 — immunology — Posted on 2019-05-08

2635 Comparing low-pass sequencing and genotyping for trait mapping in pharmacogenetics

Wasik, K.; Berisa, T.; Pickrell, J. K.; Li, J. H.; Fraser, D. J.; King, K.; Cox, C.

10.1101/632141 — genetics — Posted on 2019-05-08

2636 Cerebro: Interactive visualization of scRNA-seq data

Hillje, R.; Pelicci, P. G.; Luzi, L.

10.1101/631705 — bioinformatics — Posted on 2019-05-08

2637 Electrocardiographic characterization of non-selective His bundle pacing. Validation of novel diagnostic criteria.

Jastrzebski, M.; Moskal, P.; Curila, K.; Fijorek, K.; Kukla, P.; Bednarek, A.; Kielbasa, G.; Bednarski, A.; Baranchuk, A.; Czarnecka, D.

10.1101/631481 — physiology — Posted on 2019-05-08

2638 An investigation of PS-b-PEO polymersomes for the oral treatment and diagnosis of hyperammonemia

Matoori, S.; Bao, Y.; Schmidt, A.; Fischer, E. J.; Ochoa-Sanchez, R.; Tremblay, M.; Oliveira, M.; Rose, C. F.; Leroux, J.-C.

10.1101/631630 — pharmacology and toxicology — Posted on 2019-05-08

2639 High-content assay for precision medicine discovery in cystic fibrosis.

Prins, S.; Langron, E.; Hastings, C.; Hill, E.; Stefan, A. C.; Griffin, L. D.; Vergani, P.

10.1101/631614 — pharmacology and toxicology — Posted on 2019-05-08

2640 Membrane-type 1 matrix metalloproteinase (MMP-14) modulates tissue homeostasis by a non-proteolytic mechanism

Attur, M. G.; Lu, C.; Zhang, X.; Alexandre, C.; Valacca, C.; Zheng, S.; Meikle, S.; Brukner Dabovic, B.; Tassone, E.; Yang, Q.; Kolupaeva, V.; Yakar, S.; Abramson, S. B.; Mignatti, P.

10.1101/631739 — cell biology — Posted on 2019-05-08

2641 Directional DBS Leads Show Large Deviations from their Intended Implantation Orientation

Dembek, T. A.; Hoevels, M.; Hellerbach, A.; Horn, A.; Petry-Schmelzer, J.-N.; Borggrefe, J.; Wirths, J.; Dafsari, H. S.; Barbe, M. T.; Visser-Vandewalle, V.; Treuer, H.

10.1101/631325 — neuroscience — Posted on 2019-05-08

2642 Bi-Alignments as Models of Incongruent Evolution of RNA Sequence and Structure

Waldl, M.; Will, S.; Wolfinger, M. T.; Hofacker, I. L.; Stadler, P. F.

10.1101/631606 — bioinformatics — Posted on 2019-05-08

2643 Medial entorhinal cortex activates in a traveling wave

Hernandez Perez, J. J.; Cooper, K. W.; Newman, E. L.

10.1101/632109 — neuroscience — Posted on 2019-05-08

2644 Rainfall As A Significant Contributing Factor To Butterfly Seasonality Along A Climatic Gradient In The Neotropics

Checa, M. F.; Levy, E.; Rodriguez, J.; Willmott, K.

10.1101/630947 — ecology — Posted on 2019-05-08

2645 Tissue-specific Genome Editing in vivo by MicroRNA-repressible Anti-CRISPR Proteins

Lee, J.; Mou, H.; Ibraheim, R.; Liang, S.-Q.; Xue, W.; Sontheimer, E. J.

10.1101/631689 — bioengineering — Posted on 2019-05-08

2646 Occurrence of ordered and disordered structural elements in postsynaptic proteins supports optimization for interaction diversity

Kiss-Toth, A.; Dobson, L.; Peterfia, B.; Angyan, A. F.; Ligeti, B.; Lukacs, G.; Gaspari, Z.

10.1101/448100 — bioinformatics — Posted on 2019-05-08

2647 Early childhood development of white matter fiber density and morphology

Dimond, D.; Rohr, C. S.; Smith, R. E.; Dhollander, T.; Cho, I.; Lebel, C.; Dewey, D.; Connelly, A.; Bray, S.

10.1101/624171 — neuroscience — Posted on 2019-05-08

2648 Chronic Intermittent Ethanol Exposure Differentially Alters Microglial Morphology in the Prelimbic Cortex and Nucleus Accumbens Core

Siemsen, B.; Landin, J.; McFaddin, J.; Hooker, K.; Chandler, L. J.; Scofield, M. D.

10.1101/566034 — neuroscience — Posted on 2019-05-08

2649 Multi-resolution localization of causal variants across the genome

Sesia, M.; Katsevich, E.; Bates, S.; Candes, E.; Sabatti, C.

10.1101/631390 — genomics — Posted on 2019-05-08

2650 CENP-A drives asymmetric cell division and maintains stem identity

Dattoli, A. A.; Carty, B. L.; Kochendoerfer, A. M.; Walshe, A. E.; Dunleavy, E. M.

10.1101/631598 — cell biology — Posted on 2019-05-08

2651 Protein structure prediction and design in a biologically-realistic implicit membrane

Alford, R. F.; Fleming, P. J.; Fleming, K. G.; Gray, J. J.

10.1101/630715 — biophysics — Posted on 2019-05-08

2652 Joint contributions of cortical morphometry and white matter microstructure in healthy brain aging: A partial least squares correlation analysis

Hoagey, D. A.; Rieck, J.; Rodrigue, K.; Kennedy, K.

10.1101/620419 — neuroscience — Posted on 2019-05-08

2653 Predicting longitudinal traits derived from high-throughput phenomics in contrasting environments using genomic Legendre polynomials and B-splines

Momen, M.; Campbell, M. T.; Walia, H.; Morota, G.

10.1101/632117 — genetics — Posted on 2019-05-08

2654 ASSEMBLY MECHANISMS OF NEOTROPICAL BUTTERFLY COMMUNITIES ALONG AN ENVIRONMENTAL GRADIENT

Checa, M. F.; Donoso, D.; Levy, E.; Rodriguez, J.; Willmott, K.

10.1101/632067 — ecology — Posted on 2019-05-08

2655 A Network of Phosphatidylinositol 4,5-bisphosphate Binding Sites Regulate Gating of the Ca2+-activated Cl- Channel ANO1 (TMEM16A)

Yu, K.; Jiang, T.; Cui, Y.; Tajkhorshid, E.; Hartzell, H. C.

10.1101/625897 — biophysics — Posted on 2019-05-08

2656 Regeneration Rosetta: An interactive web application to explore regeneration-associated gene expression and chromatin accessibility

Rau, A.; Dhara, S.; Udvadia, A.; Auer, P.

10.1101/632018 — genomics — Posted on 2019-05-08

2657 Allelic imbalance reveals widespread germline-somatic regulatory differences and prioritizes risk loci in Renal Cell Carcinoma

Gusev, A.; Spisak, S.; Fay, A. P.; Carol, H.; Vavra, K. C.; Signoretti, S.; Tisza, V.; Pomerantz, M.; Abbasi, F.; Seo, J.-H.; Choueiri, T. K.; Lawrenson, K.; Freedman, M. L.

10.1101/631150 — genetics — Posted on 2019-05-08

2658 Targetable cellular signaling events drive arterial rupture in knock-in mouse models of vascular Ehlers-Danlos Syndrome

Bowen, C. J.; Giadrosic, J. F. C.; Rykiel, G.; Burger, Z.; Davis, E. C.; Helmers, M. R.; Gallo MacFarlane, E.; Dietz, H. C.

10.1101/627653 — genetics — Posted on 2019-05-08

2659 Non-autonomous induction of epithelial lineage infidelity and hyperplasia by DNA damage

Seldin, L.; Macara, I. G.

10.1101/630954 — cell biology — Posted on 2019-05-08

2660 Integration of Structured Biological Data Sources using Biological Expression Language

Hoyt, C.; Domingo-Fernandez, D.; Mubeen, S.; Marin, J.; Konotopez, A.; Ebeling, C.; Birkenbihl, C.; Muslu, O.; English, B.; Mueller, S.; Pio De Lacerda, M.; Ali, M.; Colby, S.; Turei, D.; Palacio-Escat, N.; Hofmann-Apitius, M.

10.1101/631812 — bioinformatics — Posted on 2019-05-08

2661 Dietary restriction improves fitness of ageing parents but reduces fitness of their offspring

Mautz, B.; Lind, M.; Maklakov, A.

10.1101/632026 — evolutionary biology — Posted on 2019-05-08

2662 Cell-autonomous regulation of epithelial cell quiescence by calcium channel Trpv6

Xin, Y.; Malick, A.; Hu, M.; Liu, C.; Batah, H.; Xu, H.; Duan, C.

10.1101/631861 — developmental biology — Posted on 2019-05-08

2663 Understanding the basis of CYP26 mediated regulation of lens regeneration using ex vivo eye cultures and 4-oxo-RA

Thomas, A. G.; Adil, M. T.; Henry, J. J.

10.1101/631994 — developmental biology — Posted on 2019-05-08

2664 R.ROSETTA: a package for analysis of rule-based classification models

Garbulowski, M.; Diamanti, K.; Smolinska, K.; Stoll, P.; Bornelov, S.; Ohrn, A.; Komorowski, J.

10.1101/625905 — bioinformatics — Posted on 2019-05-08

2665 Landscape and regulation of m6A and m6Am methylome across human and mouse tissues

Liu, J.; Li, K.; Cai, J.; Zhang, M.; Zhang, X.; Xiong, X.; Meng, H.; Xu, X.; Huang, Z.; Fan, J.; Yi, C.

10.1101/632000 — molecular biology — Posted on 2019-05-08

2666 Zinc finger RNA binding protein Zn72D regulates ADAR-mediated RNA editing in neurons

Sapiro, A. L.; Freund, E. C.; Restrepo, L.; Qiao, H.-H.; Bhate, A.; Li, Q.; Ni, J.-Q.; Mosca, T. J.; Li, J. B.

10.1101/631986 — genetics — Posted on 2019-05-08

2667 The cellular response towards lanthanum is substrate specific and reveals a novel route for glycerol metabolism in Pseudomonas putida KT2440

Wehrmann, M.; Toussaint, M.; Pfannstiel, J.; Billard, P.; Klebensberger, J.

10.1101/567529 — microbiology — Posted on 2019-05-08

2668 Machine learning-based identification and cellular validation of Tropomyosin 1 as a genetic inhibitor of hematopoiesis.

Thom, C. S.; Jobaliya, C. D.; Lorenz, K.; Maguire, J. A.; Gagne, A.; Gadue, P.; French, D. L.; Voight, B. F.

10.1101/631895 — genomics — Posted on 2019-05-08

2669 Facilitation and inhibition of firing activity and N-methyl-D-aspartate-evoked responses of CA1 hippocampal pyramidal cells by alpha7 nicotinic acetylcholine receptor selective compounds in vivo

Bali, Z. K.; Nagy, L. V.; Budai, D.; Hernadi, I.

10.1101/576520 — neuroscience — Posted on 2019-05-08

2670 Design and assessment of TRAP-CSP fusion antigens as effective malaria vaccines

Lu, C.; Song, G.; Beale, K.; Yan, J.; Garst, E.; Lund, E.; Catteruccia, F.; Springer, T. A.

10.1101/613653 — microbiology — Posted on 2019-05-08

2671 Patterned substrates modulate growth and dynamics of 3D cellular systems

Fanous, M.; Li, Y.; Kandel, M.; Kilian, K.; Popescu, G.

10.1101/632034 — cell biology — Posted on 2019-05-08

2672 A retrospective evaluation of automated optimization of deep brain stimulation parameters

Vorwerk, J.; Brock, A. A.; Anderson, D. N.; Rolston, J. D.; Butson, C. R.

10.1101/393900 — bioengineering — Posted on 2019-05-08

2673 Free water in white matter differentiates MCI and AD from control subjects

Dumont, M.; Roy, M.; Jodoin, P.-M.; Morency, F. C.; Houde, J.-C.; Xie, Z.; Bauer, C.; Samad, T. A.; Van Dijk, K. R. A.; Goodman, J.; Descoteaux, M.

10.1101/537092 — neuroscience — Posted on 2019-05-08

2674 Determinants of FtsZ C-terminal linker-dependent regulation of cell wall metabolism in Caulobacter crescentus

Sundararajan, K.; Barrows, J. M.; Goley, E. D.

10.1101/632075 — microbiology — Posted on 2019-05-08

2675 Cardiac pulsation evokes long-range quantum coherence in the conscious brain

Kerskens, C.; Lopez Perez, D.

10.1101/219931 — biophysics — Posted on 2019-05-08

2676 PDEparams: Parameter fitting toolbox for partial differential equations in Python

Parra-Rojas, C.; Hernandez-Vargas, E.

10.1101/631226 — bioinformatics — Posted on 2019-05-08

2677 SISUA: SemI-SUpervised generative Autoencoder for single cell data

Ngo Trong, T.; Kramer, R.; Mehtonen, J.; Gonzalez, G.; Hautamaki, V.; Heinaniemi, M.

10.1101/631382 — bioinformatics — Posted on 2019-05-08

2678 Ablation catheter motion detection during contact force and VISITAG™ Module-guided pulmonary vein isolation

Tomlinson, D. R.; Biscombe, K.; True, J.; Hosking, J.; Streeter, A. J.

10.1101/631374 — physiology — Posted on 2019-05-08

2679 Aggregation of nontuberculous mycobacteria is regulated by carbon:nitrogen balance

DePas, W. H.; Bergkessel, M.; Newman, D. K.

10.1101/631283 — microbiology — Posted on 2019-05-08

2680 From metabarcoding to metaphylogeography: separating the wheat from the chaff

Turon, X.; Antich, A.; Palacin, C.; Praebel, K.; Wangensteen, O. S.

10.1101/629535 — ecology — Posted on 2019-05-08

2681 Dynamic Laser Speckle Imaging

Postnov, D. D.; Tang, J.; Erdener, S. E.; Kilic, K.; Boas, D. A.

10.1101/626515 — bioengineering — Posted on 2019-05-08

2682 Manipulating serial replay during memory retention rapidly alters human sequence memory

Li, J.; Huang, Q.; Han, Q.; Luo, H.

10.1101/631531 — neuroscience — Posted on 2019-05-08

2683 Host-Microbial Interactions in Systemic Lupus Erythematosus and Periodontitis

Pessoa, L.; Aleti, G.; Choudhury, S.; Nguyen, D.; Yaskell, T.; Zhang, Y.; Weizhong, L.; Nelson, K.; Santos Neto, L.; Sant Ana, A.; Freire, M.

10.1101/631051 — immunology — Posted on 2019-05-08

2684 Assessing the social impact of an online course on the clinical management of Cutaneous Leishmaniasis: A qualitative study

Carrion, C.; Aymerich, M.; Arroyo, L.; Ruiz-Postigo, J. A.

10.1101/631978 — scientific communication and education — Posted on 2019-05-08

2685 Comparative profiling of the synaptic proteome from Alzheimer’s disease patients with focus on the APOE genotype

Hesse, R.; Llavero Hurtado, M.; Jackson, R.; Eaton, S. L.; Hermann, A. G.; Colom Cadena, M.; King, D.; Rose, J.; Tulloch, J.; McKenzie, C.-A.; Smith, C.; Henstridge, C.; Lamont, D.; Wishart, T.; Spires-Jones, T.

10.1101/631556 — neuroscience — Posted on 2019-05-08

2686 Bagremycin Antibiotics and Ferroverdin iron-chelators are synthetized by the Same Gene Cluster

Martinet, L.; Naome, A.; Deflandre, B.; Maciejewska, M.; Tellatin, D.; Tenconi, E.; Smargiasso, N.; De Pauw, E.; van Wezel, G. P.; Rigali, S.

10.1101/631242 — microbiology — Posted on 2019-05-08

2687 Accelerated phosphatidylcholine turnover in macrophages promotes adipose tissue inflammation in obesity

Petkevicius, K.; Virtue, S.; Bidault, G.; Jenkins, B.; Cubuk, C.; Morgantini, C.; Aouadi, M.; Dopazo, J.; Serlie, M.; Koulman, A.; Vidal-Puig, A.

10.1101/631408 — cell biology — Posted on 2019-05-08

2688 Downregulation of hippocampal NR2A/2B subunits related to cognitive impairment in a pristane-induced lupus BALB/c mice

Luciano-Jaramillo, J.; Sandoval-Garcia, F.; Vazquez-Del Mercado, M.; Gutierrez-Mercado, Y. K.; Navarro-Hernandez, R. E.; Martinez-Garcia, E. A.; Pizano-Martinez, O.; Corona-Meraz, F. I.; Banuelos-Pineda, J.; Floresvillar-Mosqueda, J. F.; Martin Marquez, B. T.

10.1101/631879 — animal behavior and cognition — Posted on 2019-05-08

2689 Optimization of Quantitative Phase Microscopy reveals new features of the growth rate of adherent mammalian cells

Liu, X.; Oh, S.; Kirschner, M. W.

10.1101/631119 — systems biology — Posted on 2019-05-08

2690 The state of preparation in performance climbing

Trifu, S.; Trifu, A. I.

10.1101/631838 — scientific communication and education — Posted on 2019-05-08

2691 Individual difference in serial dependence results from opposite influences of perceptual choices and motor responses

Zhang, H.; Alais, D.

10.1101/631309 — neuroscience — Posted on 2019-05-08

2692 Galacto-oligosaccharides modulate the juvenile gut microbiome and innate immunity to improve broiler chicken performance

Richards, P. J.; Flaujac Lafontaine, G. M.; Connerton, P. L.; Liang, L.; Asiani, K.; Fish, N. M.; Connerton, I. F.

10.1101/631259 — microbiology — Posted on 2019-05-08

2693 In situ abundance and carbon fixation activity of distinct anoxygenic phototrophs in the stratified seawater lake Rogoznica

Pjevac, P.; Dyksma, S.; Goldhammer, T.; Mujakic, I.; Koblizek, M.; Mussmann, M.; Amann, R.; Orlic, S.

10.1101/631366 — microbiology — Posted on 2019-05-08

2694 D-alanylation of Teichoic Acids in Bacilli impedes the immune sensing of peptidoglycan in Drosophila

Attieh, Z.; Kallassy, M.; Rejasse, A.; Courtin, P.; Gomberts Boneca, I.; Chapot-Chartier, M.-P.; Sanchis Borja, V.; El Chamy, L.

10.1101/631523 — immunology — Posted on 2019-05-08

2695 Set1/COMPASS repels heterochromatin invasion at euchromatic sites by disrupting Suv39/Clr4 activity and nucleosome stability

Greenstein, R. A.; Barrales, R. R.; Sanchez, N. A.; Bisanz, J. E.; Braun, S. J.; Al-Sady, B.

10.1101/630970 — genetics — Posted on 2019-05-08

2696 Nearly unbiased estimator of contemporary effective population size using within-cohort sibling pairs incorporating parental and non-parental reproductive variations

Akita, T.

10.1101/631085 — ecology — Posted on 2019-05-08

2697 Semaphorin 7a dependent programs of cell surivival, matrix remodeling, and EMT drive postpartum breast tumor progression

Tarullo, S.; Hill, R.; Hansen, K.; Behbod, F.; Borges, V. F.; Nelson, A.; Lyons, T. R.

10.1101/631044 — cancer biology — Posted on 2019-05-08

2698 Discovery of interaction-related sRNAs and their targets in the Brachypodium distachyon and Magnaporthe oryzae pathosystem

Zanini, S.; Secic, E.; Busche, T.; Kalinowski, J.; Kogel, K.-H.

10.1101/631945 — plant biology — Posted on 2019-05-08

2699 Cyclic di-GMP Increases Catalase Production and Hydrogen Peroxide Tolerance in Vibrio cholerae

Fernandez, N.; Waters, C. M.

10.1101/631275 — microbiology — Posted on 2019-05-08

2700 A novel genetic circuitry governing hypoxic metabolic flexibility, commensalism and virulence in the fungal pathogen Candida albicans

Burgain, A.; Pic, E.; Markey, L.; Faiza Tebbji, F.; Kumamoto, C. A.; Sellam, A.

10.1101/631960 — microbiology — Posted on 2019-05-08

2701 Electroporated recombinant proteins as tools for in vivo functional complementation, imaging, and chemical biology

Alex, A.; Piano, V.; Polley, S.; Stuiver, M.; Voss, S.; Ciossani, G.; Overlack, K.; Voss, B.; Wohlgemuth, S.; Petrovic, A.; Wu, Y.-W.; Selenko, P.; Musacchio, A.; Maffini, S.

10.1101/631358 — cell biology — Posted on 2019-05-08

2702 Epithelial Modelling Platform: A Tool for Model Discovery and Assembly with the Physiome Model Repository

Sarwar, D. M.; Munarko, Y.; Nickerson, D. P.

10.1101/631465 — bioinformatics — Posted on 2019-05-08

2703 BOCS: DNA k-mer content and scoring for rapid genetic biomarker identification at low coverage

Korshoj, L. E.; Nagpal, P.

10.1101/631333 — bioinformatics — Posted on 2019-05-08

2704 In situ measurement of absolute concentrations by Normalized Raman Imaging

Oh, S.; Lee, C.; Fu, D.; Yang, W.; Li, A.; Ran, C.; Yin, W.; Tabin, C.; Xie, X. S.; Kirschner, M. W.

10.1101/629543 — bioengineering — Posted on 2019-05-08

2705 The Role of the Public Health Service Equalization Program in the Control of Hypertension in China: Results from a Cross-sectional Health Interview Survey

Qin, J.; Zhang, Y.; Fridman, M.; Sweeny, K.; Zhang, L.; Mao, L.; Lin, C.

10.1101/631796 — scientific communication and education — Posted on 2019-05-08

2706 Single-cell selectivity and functional architecture of human lateral occipital complex.

Decramer, T.; Premereur, E.; Uytterhoeven, M.; Van Paesschen, W.; van Loon, J.; Janssen, P.; Theys, T.

10.1101/631929 — neuroscience — Posted on 2019-05-08

2707 Scaling of inertial delays in terrestrial mammals

mohamed thangal, s. n.; Donelan, J. M.

10.1101/631846 — neuroscience — Posted on 2019-05-08

2708 Deletion of the CTG Expansion in Myotonic Dystrophy Type 1 Reverses DMPK Aberrant Methylation in Human Embryonic Stem Cells but not Affected Myoblasts

Yanovsky-Dagan, S.; Bnaya, E.; Abu Diab, M.; Handal, T.; Zahdeh, F.; van den Broek, W. J. A. A.; Epsztejn-Litman, S.; Wansink, D. G.; Eiges, R.

10.1101/631457 — genetics — Posted on 2019-05-08

2709 Dispersal of Mycobacterium tuberculosis to indigenous populations driven by historical European trade in the South Pacific

Mulholland, C. V.; Abigail, S. C.; Aung, H. L.; Cursons, R. T.; OToole, R. F.; Gautam, S. S.; Brites, D.; Gagneux, S.; Roberts, S. A.; Karalus, N.; Cook, G. M.; Pepperell, C. S.; Arcus, V.

10.1101/631937 — evolutionary biology — Posted on 2019-05-08

2710 Sir2 non-autonomously controls differentiation of germline cells in the ovary of Drosophila melanogaster

Ayyub, C.; Kolthur-Seetharam, U.

10.1101/631176 — developmental biology — Posted on 2019-05-08

2711 Structural equation modeling for hypertension and type 2 diabetes based on multiple SNPs and multiple phenotypes

Jeon, S.; Shin, J.-y.; Yee, J.; Park, T.; Park, M.

10.1101/631853 — bioinformatics — Posted on 2019-05-08

2712 Paternal kin discrimination by sons in male chimpanzees transitioning to adulthood

Sandel, A. A.; Mitani, J. C.; Langergraber, K. E.

10.1101/631887 — animal behavior and cognition — Posted on 2019-05-08

2713 Systems-wide analysis unravels the new roles of CCM signal complex (CSC)

Abou-Fadel, J.; Vasquez, M.; Grajeda, B.; Ellis, C.; Zhang, J.

10.1101/631424 — systems biology — Posted on 2019-05-08

2714 Expanding the Zebrafish Genetic Code through Site-Specific Introduction of Diazirine-lysine, Bicyclononyne-lysine and Azido-lysine

Syed, J.; Palani, S.; Clarke, S. T.; Asad, Z.; Bottrill, A. R.; Jones, A. M.; Sampath, K.; Balasubramanian, M. K.

10.1101/631432 — synthetic biology — Posted on 2019-05-08

2715 Transcranial alternating current stimulation reduces BOLD adaptation and increases functional connectivity

Kar, K.; Ito, T.; Cole, M. W.; Krekelberg, B.

10.1101/630368 — neuroscience — Posted on 2019-05-08

2716 Spatial Confidence Sets for Raw Effect Size Images

Bowring, A.; Telschow, F.; Schwartzman, A.; Nichols, T.

10.1101/631473 — neuroscience — Posted on 2019-05-08

2717 Simulation-based comparison of Biopharmaceutics Classification System and drug structure

Chen, T.; Wu, T.; Li, N.; Yin, H.; Wu, M.

10.1101/631820 — molecular biology — Posted on 2019-05-08

2718 Single-cell RNA-seq of differentiating iPS cells reveals dynamic genetic effects on gene expression

Cuomo, A. S.; Seaton, D. D.; McCarthy, D. J.; Martinez, I.; Bonder, M. J.; Garcia-Bernardo, J.; Amatya, S.; Madrigal, P.; Isaacson, A.; Buettner, F.; Knights, A.; Natarajan, K. N.; HipSci Consortium, ; Vallier, L.; Marioni, J. C.; Chhatriwala, M.; Stegle, O.

10.1101/630996 — genomics — Posted on 2019-05-08

2719 Genetic effects on planum temporale asymmetry and their limited relevance to neurodevelopmental disorders, intelligence or educational attainment

Carrion-Castillo, A.; Pepe, A.; Xiangzhen, K.; Fisher, S. E.; Mazoyer, B.; Tzourio-Mazoyer, N.; Crivello, F.; Francks, C.

10.1101/622381 — genetics — Posted on 2019-05-08

2720 The atypical Rho GTPase RhoU interacts with Intersectin-2 to regulate endosomal recycling pathways

Gubar, O.; Croise, P.; Kropyvko, S.; Gryaznova, T.; Toth, P.; Blangy, A.; Vitale, N.; Rynditch, A.; Gasman, S.; Ory, S.

10.1101/631440 — cell biology — Posted on 2019-05-08

2721 Effect of structure in ionized albumin - based nanoparticle: Characterisation, Emodin interaction, and in vitro cytotoxicity

Siri, M.; Ruocco, M. J. F.; Achilli, E.; Pizzuto, M.; Delgado, J. F.; Ruysschaert, J. M.; Grasselli, M.; Alonso, S. d. V.

10.1101/631788 — biophysics — Posted on 2019-05-08

2722 Cellular precision of orientation and spatial frequency maps in macaque V1

Yu, C.; Ju, N.-S.; Guan, S.-C.; Tang, S.

10.1101/631416 — neuroscience — Posted on 2019-05-08

2723 Ecosystem services at risk from declining taxonomic and interaction diversity in a tropical forest

Salcido, D.; Forister, M.; Garcia, H.; Salcido, D.

10.1101/631028 — ecology — Posted on 2019-05-08

2724 Interplay of cellular states: Role of delay as control mechanism

Singh, S. N.; Chanu, A. L.; Malik, M. Z.; Singh, R. K. B.

10.1101/630418 — systems biology — Posted on 2019-05-08

2725 Single molecule dynamics of Dishevelled at the plasma membrane and Wnt pathway activation

Ma, W.; Chen, M.; Kang, H.; Steinhart, Z.; Angers, S.; He, X.; Kirschner, M. W.

10.1101/624882 — systems biology — Posted on 2019-05-08

2726 Enhanced Disease Susceptibility 5 (EDS5) is required for N-hydroxy pipecolic acid formation

Rekhter, D.; Mohnike, L.; Feussner, K.; Zienkiewicz, K.; Zhang, Y.; Feussner, I.

10.1101/630723 — plant biology — Posted on 2019-05-08

2727 A megaplasmid family responsible for dissemination of multidrug resistance in Pseudomonas

Cazares, A.; Moore, M. P.; Grimes, M.; Emond-Rheault, J.-G.; Wright, L. L.; Pongchaikul, P.; Santanirand, P.; Levesque, R. C.; Fothergill, J. L.; Winstanley, C.

10.1101/630780 — microbiology — Posted on 2019-05-08

2728 Unbiased identification of trans regulators of ADAR and A-to-I RNA editing

Freund, E. C.; Sapiro, A. L.; Li, Q.; Linder, S. E.; Moresco, J. J.; Yates, J.; Li, J. B.

10.1101/631200 — genetics — Posted on 2019-05-08

2729 Androgen-regulated transcription of ESRP2 drives alternative splicing patterns in prostate cancer

10.1101/629618 — molecular biology — Posted on 2019-05-08

2730 Immunosuppressive regimens based on Cyclophospamide or Calcineurin inhibitors: Comparison of their effect in the long term outcome of Primary Membranous Nephropathy

Stangou, M.; Marinaki, S.; Papachristou, E.; Kolovou, K.; Sambani, E.; Zerbala, S.; Papadea, P.; Balafa, O.; Rapsomanikis, K.-P.; Andrikos, A.; Manolakaki, P.; Papadopoulou, D.; Mitsopoulos, E.; Andronikidi, P.-E.; Choulitoudi, V.; Moustakas, G.; Galitsiou, D.; Dafnis, E.; Stylianou, C.; Stefanidis, I.; Golfinopoulos, S.; Panagoutsos, S.; Tsilivigkou, M.; Papadogianakis, A.; Tzanakis, I.; Sioulis, A.; Vlachakos, D.; Grapsa, E.; Spaia, S.; Kaperonis, N.; Paliouras, C.; Dioudis, C.; Papoulidou, F.; Apostolou, T.; Iatrou, C.; Boletis, I.; Goumenos, D.; Papagianni, A.

10.1101/630525 — immunology — Posted on 2019-05-08

2731 Differential local stability governs the metamorphic fold-switch of bacterial virulence factor RfaH

Galaz-Davison, P.; Molina, J. A.; Silletti, S.; Komives, E. A.; Knauer, S. H.; Artsimovitch, I.; Ramirez-Sarmiento, C. A.

10.1101/629477 — biophysics — Posted on 2019-05-08

2732 Temporal perturbation of Erk dynamics reveals network architecture of FGF2-MAPK signaling

Blum, Y.; Mikelson, J.; Dobrzynski, M.; Ryu, H.; Jacques, M.-A.; Jeon, N. L.; Khammash, M.; Pertz, O.

10.1101/629287 — systems biology — Posted on 2019-05-08

2733 Leptin induces cell migration and invasion in a FAK-Src- dependent manner in breast cancer cells

Juarez-Cruz, J. C.; Zuniga-Eulogio, M. D.; OLEA FLORES, M.; Castaneda-Saucedo, E.; Mendoza-Catalan, M. A.; Ortuno-Pineda, C.; Moreno-Godinez, M. E.; Villegas-Comonfort, S.; PADILLA-BENAVIDES, T.; Navarro Tito, N.

10.1101/631143 — cell biology — Posted on 2019-05-08

2734 Optimizing the intrinsic parallel diffusivity in NODDI: an extensive empirical evaluation

Guerrero, J. M.; Aduluru, N.; Bendlin, B. B.; Goldsmith, H. H.; Schaefer, S. M.; Davidson, R. J.; Kecskemeti, S. R.; Zhang, H.; Alexander, A. L.

10.1101/630541 — biophysics — Posted on 2019-05-08

2735 The evolution of nitroimidazole antibiotic resistance in Mycobacterium tuberculosis

Lee, B. M.; Almeida, D. V.; Afriat-Jurnou, L.; Aung, H. L.; Forde, B. M.; Hards, K.; Pidot, S. J.; Ahmed, F. H.; Mohamed, A. E.; Taylor, M. C.; West, N. P.; Stinear, T. P.; Greening, C.; Beatson, S. A.; Cook, G. M.; Nuermberger, E. L.; Jackson, C. J.

10.1101/631127 — molecular biology — Posted on 2019-05-08

2736 Basis for discrimination by engineered CRISPR/Cas9 enzymes

Liu, M.-S.; Gong, S.; Yu, H.-H.; Jung, K.; Johnson, K. A.; Taylor, D. W.

10.1101/630509 — biochemistry — Posted on 2019-05-08

2737 The neural basis of tadpole transport in poison frogs

Fischer, E. K.; Roland, A. B.; Moskowitz, N. A.; Tapia, E. E.; Summers, K.; Coloma, L.; O'Connell, L. A.

10.1101/630681 — animal behavior and cognition — Posted on 2019-05-08

2738 Trophic complexity alters the diversity-multifunctionality relationship in experimental grassland mesocosms

Anujan, K.; Heilpern, S. A.; Prager, C. M.; Weeks, B. C.; Naeem, S.

10.1101/525881 — ecology — Posted on 2019-05-07

2739 Making ATP fast and slow: do yeasts play a mixed strategy to metabolise glucose?

Safdari, H.; Sadeghi, M.; Kalirad, A.

10.1101/540757 — systems biology — Posted on 2019-05-07

2740 Safety in numbers is mediated by motion cues and depends on lobula columnar neurons in Drosophila melanogaster

Ferreira, C. H.; Moita, M. A.

10.1101/629311 — neuroscience — Posted on 2019-05-07

2741 A High-Quality Genome Assembly from a Single, Field collected Spotted Lanternfly (Lycorma delicatula) using the PacBio Sequel II System

Kingan, S. B.; Urban, J.; Lambert, C. C.; Baybayan, P.; Childers, A. K.; Coates, B. S.; Scheffler, B.; Hackett, K.; Korlach, J.; Geib, S. M.

10.1101/627679 — genomics — Posted on 2019-05-07

2742 Genic evidence that gnetophytes are sister to all other seed plants

Zhang, Y.; Liu, Z.

10.1101/629915 — genetics — Posted on 2019-05-07

2743 Accurate ethnicity prediction from placental DNA methylation data

Yuan, V.; Price, E. M.; Del Gobbo, G. F.; Mostafavi, S.; Cox, B.; Binder, A. M.; Michels, K. B.; Marsit, C.; Robinson, W. P.

10.1101/618470 — genomics — Posted on 2019-05-07

2744 3D Packing Defects in Lipid Membrane as a Function of Membrane Order

Tripathy, M.; Srivastava, A.

10.1101/591784 — biophysics — Posted on 2019-05-07

2745 scAlign: a tool for alignment, integration and rare cell identification from scRNA-seq data

Johansen, N.; Quon, G.

10.1101/504944 — bioinformatics — Posted on 2019-05-07

2746 To Improve Protein Sequence Profile Prediction through Image Captioning on Pairwise Residue Distance Map

Chen, S.; Sun, Z.; Lu, Y.; Zhao, H.; Yang, Y.

10.1101/628917 — bioinformatics — Posted on 2019-05-07

2747 Fast and Flexible Sequence Induction In Spiking Neural Networks Via Rapid Excitability Changes

Pang, R.; Fairhall, A. L.

10.1101/494310 — neuroscience — Posted on 2019-05-07

2748 Convergent eusocial evolution is based on a shared reproductive groundplan plus lineage-specific plastic genes

Warner, M. R.; Qiu, L.; Holmes, M. J.; Mikheyev, A. S.; Linksvayer, T. A.

10.1101/454645 — evolutionary biology — Posted on 2019-05-07

2749 Neutrophil extracellular trap stabilization leads to improved outcomes in murine models of sepsis

Gollomp, K. L.; Sarkar, A.; Seeholzer, S.; Rauova, L.; Kowalska, M. A.; Poncz, M.

10.1101/630483 — immunology — Posted on 2019-05-07

2750 Heterogeneous disease-propagating stem cells in juvenile myelomonocytic leukemia

Louka, E.; Povinelli, B.; Rodriguez Meira, A.; Buck, G.; Ashley, N.; Hamblin, A.; Booth, C. A. G.; Sousos, N.; Roy, A.; Elliott, N.; Iskander, D.; De la Fuente, J.; Fordham, N.; O'Byrne, S.; Inglott, S.; Rao, A.; Roberts, I.; Mead, A.

10.1101/628479 — cancer biology — Posted on 2019-05-07

2751 Viral infection causes sex-specific changes in fruit fly social aggregation behaviour

Siva-Jothy, J. A.; Vale, P. F.

10.1101/630913 — animal behavior and cognition — Posted on 2019-05-07

2752 An epigenetic landscape governs early fate decision in cellular aging

Li, Y.; Jiang, Y.; Paxman, J.; O'Laughlin, R.; Pillus, L.; Tsimring, L. S.; Hasty, J.; Hao, N.

10.1101/630921 — systems biology — Posted on 2019-05-07

2753 De-novo discovery of tumoricidal aptamers in a DNA sequencing chip

Mamet, N.; Rusinek, I.; Harari, G.; Shapira, Z.; Zamir, A.; Borovsky, N.; Joseph, N.; Motin, M.; Saban, D.; Bachelet, I.

10.1101/630830 — synthetic biology — Posted on 2019-05-07

2754 Hippocampal theta coordinates memory processing during visual exploration

Kragel, J. E.; VanHaerents, S.; Templer, J. W.; Schuele, S.; Rosenow, J. M.; Nilakantan, A. S.; Bridge, D. J.

10.1101/629451 — neuroscience — Posted on 2019-05-07

2755 Neural correlates of cardiac interoceptive accuracy across development: implications for social symptoms in autism spectrum disorders

Failla, M. D.; Bryant, L. K.; Heflin, B. H.; Mash, L. E.; Schauder, K.; Davis, S.; Gerdes, M. B.; Weitlauf, A. S.; Rogers, B. P.; Cascio, C. J.

10.1101/630343 — neuroscience — Posted on 2019-05-07

2756 Quantitative insights into age-associated DNA-repair inefficiency in single cells

Young, T. Z.; Liu, P.; Acar, M.

10.1101/628909 — systems biology — Posted on 2019-05-07

2757 High-throughput isolation and culture of human gut bacteria with droplet microfluidics

Villa, M.; Bloom, R. J.; Silverman, J. D.; Durand, H. K.; Jiang, S.; Wu, A.; Huang, S.; You, L.; David, L. A.

10.1101/630822 — microbiology — Posted on 2019-05-07

2758 A DNA recognition code for probing the in vivo functions of zinc finger transcription factors at domain resolution

Dogan, B.; Kailasam, S.; Corchado, A. H.; Najafabadi, H. S.

10.1101/630756 — bioinformatics — Posted on 2019-05-07

2759 Clustering of the structures by using \"snakes-and-dragons\" approach, or correlation matrix as a signal

Andreev, V. P.; Liu, G.; Zee, J.; Henn, L.; Flores, G. E.; Merion, R. M.

10.1101/630665 — bioinformatics — Posted on 2019-05-07

2760 Auxin-Induced Actin Cytoskeleton Rearrangements Require AUX1

Arieti, R. S.; Staiger, C. J.

10.1101/630798 — plant biology — Posted on 2019-05-07

2761 A preliminary study of brain metabolism in treatment-resistant depression before and after treatment with olanzapine-fluoxetine combination

Pardo, J. V.; Sheikh, S. A.; Schwindt, G.; Lee, J. T.; Adson, D. E.; Rittberg, B.; Abuzzahab, F. S.

10.1101/624288 — neuroscience — Posted on 2019-05-07

2762 Association between uncontrolled eating and caudate responses to reward cues

Bado, P.; Moll, J.; P. Nazar, B.; de Oliveira-Souza, R.; da Costa, R.; Tripp, G.; Mattos, P.; Furukawa, E.

10.1101/629808 — neuroscience — Posted on 2019-05-07

2763 Reconciling Base-Pair Resolution 5-methylcytosine and 5-hydroxymethylcytosine Data in Neuroepigenetics

Kochmanski, J.; Savonen, C.; Bernstein, A. I.

10.1101/630772 — genetics — Posted on 2019-05-07

2764 No association of mitochondrial DNA levels in trophectodermal cells with the developmental competence of the blastocyst and pregnancy outcomes

G, R.; Veerasigamani, G.; Ashraf, M. C.; Singh, S.; Laheri, S.; Modi, D.

10.1101/629956 — developmental biology — Posted on 2019-05-07

2765 Time-resolved compound repositioning predictions on a texted-mined knowledge network

Mayers, M. D.; Li, T. S.; Queralt-Rosinach, N.; Su, A. I.

10.1101/625459 — bioinformatics — Posted on 2019-05-07

2766 Theta-phase dependent neuronal coding during sequence learning in human single neurons.

Reddy, L.; Self, M. W.; Zoefel, B.; Poncet, M.; Possel, J. K.; Peters, J. C.; Baayen, J. C.; Idema, S.; VanRullen, R.; Roelfsema, P. R.

10.1101/630095 — neuroscience — Posted on 2019-05-07

2767 CNOT1 mediates phosphorylation via Protein kinase A on the circadian clock

Zhang, Y.; Qin, H.; Feng, Y.; Gao, P.; Zhong, Y.; Tan, Y.; Wang, H.; Xu, Y.; Takahashi, J. S.; Huang, G.

10.1101/630897 — developmental biology — Posted on 2019-05-07

2768 How do brassinosteroids activate their receptors?

Moffett, A. S.; Shukla, D.

10.1101/630640 — plant biology — Posted on 2019-05-07

2769 A Temporal Transcriptional Map of Human Natural Killer Cell Differentiation

Pfefferle, A.; Netskar, H.; Ask, E. H.; Lorenz, S.; Goodridge, J. P.; Sohlberg, E.; Clancy, T.; Malmberg, K.-J.

10.1101/630657 — immunology — Posted on 2019-05-07

2770 Predicting patient-specific radiotherapy responses in head and neck cancer to personalize radiation dose fractionation

Enderling, H.; Susassee, E.; Caudell, J.

10.1101/630806 — cancer biology — Posted on 2019-05-07

2771 Computational staining of pathology images to study tumor microenvironment in lung cancer

Wang, S.; Rong, R.; Yang, D. M.; Cai, L.; Yang, L.; Luo, D.; Yao, B.; Xu, L.; Wang, T.; Zhan, X.; Xie, Y.; Gazdar, A.; Minna, J.; Xiao, G.

10.1101/630749 — bioinformatics — Posted on 2019-05-07

2772 Superloser: a plasmid shuffling vector for Saccharomyces cerevisiae with exceedingly low background

Haase, M. A. B.; Truong, D. M.; Boeke, J. D.

10.1101/630863 — genetics — Posted on 2019-05-07

2773 Premovement suppression of corticospinal excitability may be a necessary part of movement preparation

Ibanez, J.; Hannah, R.; Rocchi, L.; Rothwell, J. C.

10.1101/470153 — neuroscience — Posted on 2019-05-07

2774 Single-cell Lineage Tracing by Integrating CRISPR-Cas9 Mutations with Transcriptomic Data

Zafar, H.; Lin, C.; Bar-Joseph, Z.

10.1101/630814 — bioinformatics — Posted on 2019-05-07

2775 Critical domains of moss KCBP kinesin for cargo transport

Yoshida, M. W.; Yamada, M.; Goshima, G.

10.1101/629733 — plant biology — Posted on 2019-05-07

2776 Force-independent interactions of talin and vinculin govern integrin-mediated mechanotransduction

Atherton, P.; Lausecker, F.; Carisey, A.; Gilmore, A.; Critchley, D.; Barsukov, I.; Ballestrem, C.

10.1101/629683 — cell biology — Posted on 2019-05-07

2777 Stem cell-derived cranial and spinal motor neurons reveal proteostatic differences between ALS resistant and sensitive motor neurons

An, D.; Fujiki, R.; Iannitelli, D.; Smerdon, J.; Maity, S.; Rose, M.; Gelber, A.; Wanaselja, E.; Yagudayeva, I.; Lee, J.; Vogel, C.; Wichterle, H.; Engle, E.; Mazzoni, E.

10.1101/629295 — neuroscience — Posted on 2019-05-07

2778 Multidimensional analysis of extended molecular dynamics simulations shows the complexity of signal transduction by the histamine H3 membrane receptor

Herrera-Zuniga, L. D.; Moreno-Vargas, L. M.; Correa-Basurto, J.; Prada, D.; Curmi, P.; Arrang, J.-M.; Maroun, R. C.

10.1101/604793 — bioinformatics — Posted on 2019-05-07

2779 For common community phylogenetic analyses, go ahead and use synthesis phylogenies

Li, D.; Trotta, L.; Marx, H. E.; Allen, J. M.; Sun, M.; Soltis, D. E.; Soltis, P. S.; Guralnick, R. P.; Baiser, B. H.

10.1101/370353 — ecology — Posted on 2019-05-07

2780 Synthetic peptide-induced internalization of biomolecules into various plant and algal cells via micropinocytosis

Chuah, J.-A.; Odahara, M.; Kodama, Y.; Miyamoto, T.; Tsuchiya, K.; Motoda, Y.; Kigawa, T.; Numata, K.

10.1101/630301 — plant biology — Posted on 2019-05-07

2781 OLIG2 Drives Abnormal Neurodevelopmental Phenotypes in Human iPSC-Based Organoid and Chimeric Mouse Models of Down Syndrome

Xu, R.; Brawner, A.; Li, S.; Liu, J.; Kim, H.; Xue, H.; Pang, Z.; Kim, W.-Y.; Hart, R.; Liu, Y.; Jiang, P.

10.1101/462739 — neuroscience — Posted on 2019-05-07

2782 Transcriptomic evidence that von Economo neurons are regionally specialized extratelencephalic-projecting excitatory neurons

Hodge, R. D.; Miller, J. A.; Novotny, M. D.; Kalmbach, B. D.; Ting, J. T.; Bakken, T. E.; Aevermann, B. D.; Barkan, E. R.; Berkowitz-Cerasano, M. L.; Cobbs, C.; Diez-Fuertes, F.; Ding, S.-L.; McCorrison, J.; Schork, N. J.; Shehata, S. I.; Smith, K. A.; Sunkin, S. M.; Tran, D. N.; Venepally, P.; Yanny, A. M.; Steemers, F. J.; Phillips, J. W.; Bernard, A.; Koch, C.; Lasken, R. S.; Scheuermann, R. H.; Lein, E. S.

10.1101/627505 — neuroscience — Posted on 2019-05-07

2783 Non-linear sequence similarity between the Xist and Rsx long noncoding RNAs suggests shared functions of tandem repeat domains

Sprague, D.; Waters, S. A.; Kirk, J. M.; Wang, J. R.; Samollow, P. B.; Waters, P. D.; Calabrese, J. M.

10.1101/630475 — genetics — Posted on 2019-05-07

2784 Generalized locomotion of brittle stars with an arbitrary number of arms

Wakita, D.; Kagaya, K.; Aonuma, H.

10.1101/616383 — animal behavior and cognition — Posted on 2019-05-07

2785 Global ribosome profiling reveals that mutant huntingtin stalls ribosomes and represses protein synthesis independent of fragile X mental retardation protein

Eshraghi, M.; Karunadharma, P.; Blin, J.; Shahani, N.; Ricci, E.; Michel, A.; Urban, N.; Galli, N.; Rajendra Rao, S.; Sharma, M.; Florescu, K.; Subramaniam, S.

10.1101/629667 — neuroscience — Posted on 2019-05-07

2786 Changes in protein function underlies the disease spectrum in patients with CHIP mutations

Madrigal, S. C.; McNeil, Z.; Shi, C.-h.; Patterson, C.; Scaglione, K. M.; Schisler, J. C.

10.1101/620591 — neuroscience — Posted on 2019-05-07

2787 Probing the polarity of GABAergic transmission in vivo

Dubanet, O.; Ferreira, A.; Frick, A.; Hirase, H.; Beyeler, A.; Leinekugel, X.

10.1101/630608 — neuroscience — Posted on 2019-05-07

2788 A Proteomic Atlas of Senescence-Associated Secretomes for Aging Biomarker Development

Basisty, N.; Kale, A.; Jeon, O.; Kuehnemann, C.; Payne, T.; Rao, C.; Holtz, A.; Shah, S.; Ferrucci, L.; Campisi, J.; Schilling, B.

10.1101/604306 — cell biology — Posted on 2019-05-07

2789 DiI-mediated analysis of pre- and postsynaptic structures in human postmortem brain tissue

Das, S. C.; Chen, D.; Callor, W. B.; Christensen, E.; Coon, H.; williams, m. E.

10.1101/558817 — neuroscience — Posted on 2019-05-07

2790 RexAB is essential for the mutagenic repair of Staphylococcus aureus DNA damage caused by co-trimoxazole

Clarke, R. S.; Bruderer, M. S.; Ha, K. P.; Edwards, A. M.

10.1101/568196 — microbiology — Posted on 2019-05-07

2791 Rare genetic variation and balanced polymorphisms are important for survival in global change conditions

Brennan, R. S.; Garrett, A. D.; Huber, K. E.; Hargarten, H.; Pespeni, M. H.

10.1101/422261 — evolutionary biology — Posted on 2019-05-07

2792 Binning unassembled short reads based on k-mer covariance using sparse coding

Kyrgyzov, O.; Prost, V.; Gazut, S.; Farcy, B.; Bruls, T.

10.1101/599332 — bioinformatics — Posted on 2019-05-07

2793 Joint inference and alignment of genome structures enables characterization of compartment-independent reorganization across cell types

Rieber, L.; Mahony, S.

10.1101/545194 — bioinformatics — Posted on 2019-05-07

2794 Rewiring of transcriptional networks as a major event leading to the diversity of asexual multicellularity in fungi

Etxebeste, O.; Otamendi, A.; Garzia, A.; Espeso, E. A.; Cortese, M. S.

10.1101/627414 — developmental biology — Posted on 2019-05-07

2795 Pharmacologically targeting a novel pathway of sodium iodide symporter trafficking to enhance radioiodine uptake

Fletcher, A.; Read, M. L.; Thornton, C. E. M.; Larner, D. P.; Poole, V. L.; Brookes, K.; Nieto, H. R.; Alshahrani, M.; Thompson, R. J.; Lavery, G. G.; Campbell, M. J.; Boelaert, K.; Turnell, A. S.; Smith, V. E.; McCabe, C. J.

10.1101/622241 — cancer biology — Posted on 2019-05-07

2796 Nanoscale robots exhibiting quorum sensing

Amir, Y.; Abu-Horowitz, A.; Werfel, J.; Bachelet, I.

10.1101/448761 — synthetic biology — Posted on 2019-05-07

2797 Characterization of a β-lactamase that contributes to intrinsic β-lactam resistance in Clostridioides difficile

Sandhu, B. K.; Edwards, A. N.; Anderson, S. E.; Woods, E. C.; McBride, S. M.

10.1101/630020 — microbiology — Posted on 2019-05-07

2798 Meta-taxonomic Analysis of Prokaryotic and Eukaryotic Gut Flora in Stool Samples from Visceral Leishmaniasis Cases and Endemic Controls in Bihar State India

Lappan, R.; Classon, C.; Kumar, S.; Singh, O.-P.; de Almeida, R.; Chakravarty, J.; Kumari, P.; Kansal, S.; Sundar, S.; Blackwell, J. M.

10.1101/630624 — genomics — Posted on 2019-05-07

2799 The evolution of egg trading in simultaneous hermaphrodites

Pena, J.; Nöldeke, G.; Puebla, O.

10.1101/460386 — evolutionary biology — Posted on 2019-05-07

2800 Pluripotent Stem Cell-derived Cerebral Organoids Reveal Human Oligodendrogenesis with Dorsal and Ventral Origins

Kim, H.; Xu, R.; Ragunathan, P.; Dunaevsky, A.; Liu, Y.; Dreyfus, C.; Jiang, P.

10.1101/460907 — developmental biology — Posted on 2019-05-07

2801 Assembly and seasonality of core phyllosphere microbiota on perennial biofuel crops

Grady, K. L.; Sorensen, J. W.; Stopnisek, N.; Guittar, J.; Shade, A.

10.1101/446369 — microbiology — Posted on 2019-05-07

2802 Computational and experimental optimization of T cell activation

Aksoy, B. A.; Czech, E.; Paulos, C.; Hammerbacher, J.

10.1101/629857 — immunology — Posted on 2019-05-07

2803 Region-specific magnetic field structure sea turtle populations

Cameron, S. J. K.; Baltazar-Soares, M.; Eizaguirre, C.

10.1101/630152 — evolutionary biology — Posted on 2019-05-07

2804 Co-regulation and functional cooperativity of FOXM1 and RHNO1 bidirectional genes in ovarian cancer

Barger, C. J.; Branick, C.; Chee, L.; Albahrani, M.; Klinkebiel, D.; Drapkin, R.; Odunsi, K.; Zou, L.; Karpf, A.

10.1101/630442 — cancer biology — Posted on 2019-05-07

2805 Large Scale-Free Network Organization is Likely Key for Biofilm Phase Transition

Selvarajoo, K.

10.1101/630103 — systems biology — Posted on 2019-05-07

2806 Long-range phase synchronization of high-gamma activity in human cortex

Arnulfo, G.; Wang, S.; Toselli, B.; Williams, N.; Hirvonen, J.; Fato, M.; Nobili, L.; Cardinale, F.; Rubino, A.; Zhigalov, A.; Palva, S.; Palva, J.

10.1101/442251 — neuroscience — Posted on 2019-05-07

2807 Glycosylation-dependent enhanced cell-binding and infectivity through DC-SIGN in the West African Ebola virus Makona

Lasala, F.; Luczkowiak, J.; Kremer, L.; Casasnovas, J. M.; Delgado, R.

10.1101/630269 — microbiology — Posted on 2019-05-07

2808 Comprehensive genomic analysis reveals dynamic evolution of mammalian transposable elements that code for viral-like protein domains

Ueda, M. T.; Kryukov, K.; Mitsuhashi, S.; Mitsuhashi, H.; Imanishi, T.; Nakagawa, S.

10.1101/628875 — genomics — Posted on 2019-05-07

2809 The Vertebrate Codex Gene Breaking Protein Trap Library For Genomic Discovery and Disease Modeling Applications

Ichino, N.; Serres, M.; Urban, R.; Urban, M.; Schaefbauer, K.; Greif, L.; Varshney, G. K.; Skuster, K. J.; McNulty, M.; Daby, C.; Wang, Y.; Liao, H.-k.; El-Rass, S.; Ding, Y.; Liu, W.; Schimmenti, L. A.; Sivasubbu, S.; Balciunas, D.; Hammerschmidt, M.; Farber, S. A.; Wen, X.-Y.; Xu, X.; McGrail, M.; Essner, J.; Burgess, S. M.; Clark, K. J.; Ekker, S. C.

10.1101/630236 — genomics — Posted on 2019-05-07

2810 Variable prediction accuracy of polygenic scores within an ancestry group

Mostafavi, H.; Harpak, A.; Conley, D.; Pritchard, J. K.; Przeworski, M.

10.1101/629949 — genetics — Posted on 2019-05-07

2811 Same law, different results: comparative analysis of Endangered Species Act consultations by two federal agencies

Evansen, M.; Li, Y.-W.; Malcom, J.

10.1101/165647 — ecology — Posted on 2019-05-07

2812 Recapitulation and Retrospective Prediction of Biomedical Associations Using Temporally-enabled Word Embeddings

Park, J.; Lopez Marquez, A.; Puranik, A.; Rajasekharan, A.; Garcia-Rivera, E.

10.1101/627513 — bioinformatics — Posted on 2019-05-07

2813 Toffee - a highly efficient, lossless file format for DIA-MS

Tully, B.

10.1101/628933 — bioinformatics — Posted on 2019-05-07

2814 Does deliberation really need more effort than intuition? A test using event-related brain potential

Zeng, J.; Tang, D.-l.; Yu, J.; Zhang, Q.; Nusbaum, H.

10.1101/628446 — neuroscience — Posted on 2019-05-07

2815 Performance comparison of reverse transcriptases for single-cell studies

Zucha, D.; Androvic, P.; Kubista, M.; Valihrach, L.

10.1101/629097 — molecular biology — Posted on 2019-05-07

2816 Draft Genome Sequence of Candida auris Strain LOM, a Human Clinical Isolate from Greater Metropolitan Houston, Texas

Long, S. W.; Olsen, R.; Nguyen, H. A. T.; Ojeda Saavedra, M.; Musser, J. M.

10.1101/629741 — microbiology — Posted on 2019-05-07

2817 Genetic variation regulates the activation and specificity of Restriction-Modification systems in Neisseria gonorrhoeae

Sanchez-Buso, L.; Golparian, D.; Parkhill, J.; Unemo, M.; Harris, S. R.

10.1101/630434 — microbiology — Posted on 2019-05-07

2818 Inhibition of A20 deubiquitinase activity by KSHV vFLIP: A SUMO dependent mechanism?

Herold, K.; Ruffin, A.; Mitchell, A. E.; Chmura, J. C.; Johnson, D.; Ehrlich, E. S.

10.1101/629113 — microbiology — Posted on 2019-05-07

2819 MAPPING TRANSCRIPTION FACTOR NETWORKS BY COMPARING TF BINDING LOCATIONS TO TF PERTURBATION RESPONSES

Kang, Y.; Patel, N. R.; Shively, C.; Recio, P. S.; Chen, X.; Wranik, B. J.; Kim, G.; Mitra, R.; McIsaac, R. S.; Brent, M. R.

10.1101/619676 — genomics — Posted on 2019-05-07

2820 Single cell transcriptomics reveals opioid usage evokes widespread suppression of antiviral genes

Karagiannis, T. T.; Cleary, J. P.; Martin, N. G.; Nelson, E. C.; Cheng, C. S.

10.1101/630574 — genomics — Posted on 2019-05-07

2821 Why are education, socioeconomic position and intelligence genetically correlated?

Morris, T. T.; Davies, N. M.; Hemani, G.; Davey Smith, G.

10.1101/630426 — genetics — Posted on 2019-05-07

2822 A Fast and Flexible Algorithm for Solving the Lasso in Large-scale and Ultrahigh-dimensional Problems

Qian, J.; Du, W.; Tanigawa, Y.; Aguirre, M.; Tibshirani, R.; Rivas, M. A.; Hastie, T.

10.1101/630079 — bioinformatics — Posted on 2019-05-07

2823 New iterative reallocation algorithms based on the silhouette index for numerical classification

Lengyel, A.; Botta-Dukat, Z.

10.1101/630384 — bioinformatics — Posted on 2019-05-07

2824 Discovery of tumoricidal DNA aptamers by effect-directed in-vitro evolution

Mamet, N.; Amir, Y.; Lavi, E.; Bassali, L.; Harari, G.; Rusinek, I.; Skalka, N.; Debby, E.; Greenberg, M.; Zamir, A.; Paz, A.; Reiss, N.; Loewenthal, G.; Avivi, I.; Shimoni, A.; Neev, G.; Abu-Horowitz, A.; Bachelet, I.

10.1101/629105 — synthetic biology — Posted on 2019-05-07

2825 Comparison of long-term outcomes between enteral nutrition via gastrostomy and total parenteral nutrition in the elderly with dysphagia: A propensity-matched cohort study

Masaki, S.; Kawamoto, T.

10.1101/630566 — scientific communication and education — Posted on 2019-05-07

2826 The influence of visual experience and cognitive goals on spatial representations of nociceptive stimuli

Vanderclausen, C.; Manfron, L.; De Volder, A.; Legrain, V.

10.1101/623561 — neuroscience — Posted on 2019-05-07

2827 Efficient phase coding in hippocampal place cells

Seenivasan, P.; Narayanan, R.

10.1101/630319 — neuroscience — Posted on 2019-05-07

2828 Inhibition of host Lactate dehydrogenase A by a small-molecule limits Mycobacterium tuberculosis growth and potentiates bactericidal activity of isoniazid

Krishnamoorthy, G.; Kaiser, P.; Abu Abed, U.; Weiner, J.; Moura-Alves, P.; Brinkmann, V.; Kaufmann, S. H. E.

10.1101/626002 — microbiology — Posted on 2019-05-07

2829 Whole Chromosome Haplotype Phasing from Long-Range Sequencing

Tourdot, R.; Zhang, C.-Z.

10.1101/629337 — genomics — Posted on 2019-05-07

2830 Model-based control of individual finger movements for prosthetic hand function

Blana, D.; van den Bogert, A. J.; Murray, W. M.; Ganguly, A.; Krasoulis, A.; Nazarpour, K.; Chadwick, E. K.

10.1101/629246 — bioengineering — Posted on 2019-05-07

2831 Inhibition of GMP synthesis extends yeast replicative lifespan

Sarnoski, E. A.; Liu, P.; Urbonaite, G.; Olmez, T. T.; Young, T. Z.; Song, R.; Acar, M.

10.1101/629428 — systems biology — Posted on 2019-05-07

2832 A genetically validated approach to detect inorganic polyphosphates in plants.

Zhu, J.; Loubery, S.; Broger, L.; Lorenzo-Orts, L.; Utz-Pugin, A.; Chang, Y.-T.; Hothorn, M.

10.1101/630129 — plant biology — Posted on 2019-05-07

2833 Genome-wide 5-hydroxymethylcytosine (5hmC) emerges at early stage of in vitro hepatocyte differentiation

Rodriguez-Aguilera, J. R.; Ecsedi, S.; Cros, M.-P.; Goldsmith, C.; Dominguez-Lopez, M.; Guerrero-Celis, N.; Perez Cabeza De Vaca, R.; Chemin, I.; Recillas-Targa, F.; Chagoya, V.; Hernandez-Vargas, H.

10.1101/629493 — genomics — Posted on 2019-05-07

2834 Genic evidence that gnetophytes are sister to all other seed plants

Zhang, Y.; Liu, Z.

10.1101/629915 — genetics — Posted on 2019-05-07

2835 Transactional sex among men who have sex with men participating in the CohMSM prospective cohort study in West Africa

Kounta, C. H.; Sagaon-Teyssier, L.; Coulaud, P.-J.; Mora, M.; Bourrelly, M.; Maradan, G.; Spire, B.; keita, A. A.; Dembele Keita, B.; Yoro, S. A. B.; Anoma, C.; Coulibaly, C.; Dah, E. T. T.; Agbomadji, S.; Mensah, E.; Bernier, A.; Couderc, C.; Laurent, C.

10.1101/630517 — epidemiology — Posted on 2019-05-07

2836 AI on animals: AI-assisted animal-borne logger never misses the moments that biologists want

Korpela, J. M.; Suzuki, H.; Matsumoto, S.; Mizutani, Y.; Samejima, M.; Maekawa, T.; Nakai, J.; Yoda, K.

10.1101/630053 — ecology — Posted on 2019-05-07

2837 Heterogenization of remaining biodiversity in fragmented tropical forests across agricultural landscapes

Vidal, C. Y.; Souza Bezerra Rocha, D.; Ferreira de Siqueira, M.; Rodrigues, R. R.; Siqueira, T.

10.1101/629782 — ecology — Posted on 2019-05-07

2838 DreamDMI: a tool for Disease Module Identification in molecular networks

Tomasoni, M.; Choobdar, S.; Marbach, D.; Gomez, S.; Crawford, J.; Zhang, W.; Bergmann, S.

10.1101/611418 — bioinformatics — Posted on 2019-05-07

2839 The photoactive site modulates current rectification and channel closing in the natural anion channelrhodopsin GtACR1

Sineshchekov, O. A.; Govorunova, E. G.; Li, H.; Wang, X.; Spudich, J. L.

10.1101/630327 — biochemistry — Posted on 2019-05-07

2840 Electrospun Ag-doped SnO2 hollow nanofibers with high antibacterial activity

Li, Y.; Tang, X.; Zhang, B.; Mao, H.

10.1101/629030 — biochemistry — Posted on 2019-05-07

2841 Accounting for red blood cell accessibility reveals distinct invasion strategies in Plasmodium falciparum strains

Cai, F.; De Simone, T.; Hansen, E.; Jennings, C. V.; Bei, A. K.; Ahouidi, A. D.; Mboup, S.; Duraisingh, M. T.; Buckee, C. O.

10.1101/626044 — systems biology — Posted on 2019-05-07

2842 Gene Sets Analysis using Network Patterns

Linkowski, G.; Blatti, C.; Kalari, K.; Sinha, S.; Vasudevan, S.

10.1101/629816 — systems biology — Posted on 2019-05-07

2843 Factors affecting pathogenicity of the turfgrass dollar spot pathogen in natural and model hosts

Rioux, R. A.; Stephens, C.; Kerns, J. P.

10.1101/630582 — plant biology — Posted on 2019-05-07

2844 Distinct and overlapping functions of Miscanthus sinensis MYB transcription factors SCM1 and MYB103 in lignin biosynthesis

Golfier, P.; Unda, F.; Murphy, E. K.; Xie, J.; He, F.; Zhang, W.; Mansfield, S. D.; Rausch, T.; Wolf, S.

10.1101/629709 — plant biology — Posted on 2019-05-07

2845 Development of SGC-GAK-1 as an orally active in vivo probe for cyclin G associated kinase through cytochrome P450 inhibition

Asquith, C. R. M.; Bennett, J. M.; Su, L.; Latinen, T.; Elkins, J. M.; Pickett, J. E.; Wells, C. I.; Li, Z.; Willson, T. M.; Zuercher, W. J.

10.1101/629220 — pharmacology and toxicology — Posted on 2019-05-07

2846 Distinct Oscillation Dynamics Selectively Coordinate Excitatory and Inhibitory Neurons in Prefrontal Cortex during Sensory Discrimination

Tseng, H.-a.; Han, X.

10.1101/629659 — neuroscience — Posted on 2019-05-07

2847 Behavioral and Computational Evidence for Simultaneous Guidance of Attention by Multiple Working Memory Items

Zhou, C.; Lorist, M. M.; Mathot, S.

10.1101/629378 — neuroscience — Posted on 2019-05-07

2848 Controlling emulsification for organic solvent-based tissue clearing

Hou, B.; Liu, X.; Zhang, D.; Yang, Z.; Hui, H.; Wang, P.; Wang, J.; Qiu, Z.; Liu, Y.; Yang, Z.; Jiang, T.

10.1101/628925 — neuroscience — Posted on 2019-05-07

2849 Bile acid metabolism is altered in multiple sclerosis and supplementation ameliorates neuroinflammation

Bhargava, P.; Mische, L.; Smith, M. D.; Harrington, E.; Fitzgerald, K. C.; Martin, K.; Kim, S.; Reyes, A. A.; Gonzalez-Cardona, J.; Volsko, C.; Singh, S.; Varanasi, K.; Sotirchos, E. S.; Nourbakhsh, B.; Dutta, R.; Mowry, E. M.; Waubant, E.; Calabresi, P. A.

10.1101/627356 — neuroscience — Posted on 2019-05-07

2850 Auditory cortical alpha desynchronization prioritizes the representation of memory items during a retention period

Kraft, N.; Demarchi, G.; Weisz, N.

10.1101/626929 — neuroscience — Posted on 2019-05-07

2851 Photoreceptor inputs into pupil control

Spitschan, M.

10.1101/624759 — neuroscience — Posted on 2019-05-07

2852 Safety in numbers is mediated by motion cues and depends on lobula columnar neurons in Drosophila melanogaster

Ferreira, C. H.; Moita, M. A.

10.1101/629311 — neuroscience — Posted on 2019-05-07

2853 A general spectral decomposition of causal influences applied to integrated information

Cohen, D.; Sasai, S.; Tsuchiya, N.; Oizumi, M.

10.1101/629014 — neuroscience — Posted on 2019-05-07

2854 Dose-dependent role of Gfi1 in murine hematopoietic stem cell self-renewal and differentiation

Schuette, J.; Thivakaran, A.; Al-Matary, Y. S. A.; Patnana, P. K.; Frank, D.; Engel, D. R.; Duehrsen, U.; Khandanpour, C.

10.1101/625715 — molecular biology — Posted on 2019-05-07

2855 The L1 stalk is required for efficient export of nascent large ribosomal subunits in yeast

Musalgaonkar, S.; Black, J. J.; Johnson, A.

10.1101/629261 — molecular biology — Posted on 2019-05-07

2856 Rapid functionalisation and detection of viruses via a novel Ca2+-mediated virus-DNA interaction

Robb, N. C.; Taylor, J. M.; Kent, A.; Pambos, O. J.; Gilboa, B.; Kapanidis, A. N.

10.1101/629303 — microbiology — Posted on 2019-05-07

2857 Thresholds for post-rebound viral control after CCR5 gene-edited autologous hematopoietic cell transplantation

Cardozo-Ojeda, E. F.; Duke, E. R.; Peterson, C. W.; Reeves, D. B.; Mayer, B. T.; Kiem, H.-P.; Schiffer, J. T.

10.1101/629717 — microbiology — Posted on 2019-05-07

2858 The Urinary Microbiota in Relation to the Reproductive Tract Microbiota

Li, F.; Chen, C.; Wei, W.; Song, L.; Zhang, X.; Dai, J.; Hao, L.; Jie, Z.; Li, J.; Song, X.; Wang, Z.; Zeng, L.; Du, H.; Tang, H.; Yang, H.; Wang, J.; Kristiansen, K.; Xu, X.; Wu, R.; Jia, H.

10.1101/628974 — microbiology — Posted on 2019-05-07

2859 Developmentally Regulated Genome Editing in Terminally Differentiated N2-Fixing Heterocysts of Anabaena cylindrica ATCC 29414

Qiu, Y.; Gu, L.; Tian, S.; Sidhu, J. S.; Gibbons, J.; Van Den Top, T.; Gonzalez-Hernandez, J.; Zhou, R.

10.1101/629832 — microbiology — Posted on 2019-05-07

2860 Acquisition of cross-resistance to bedaquiline and clofazimine following treatment for tuberculosis in Pakistan

Ghodousi, A.; Rizvi, A. H.; Baloch, A. Q.; Ghafoor, A.; Khanzada, F. M.; Qadir, M.; Borroni, E.; Trovato, A.; Tahseen, S.; Cirillo, D. M.

10.1101/630012 — microbiology — Posted on 2019-05-07

2861 Mycobacterium tuberculosis reactivates HIV via exosomes mediated resetting of cellular redox potential and bioenergetics

Tyagi, P.; Pal, V. K.; Srinivasan, S.; Singh, A.

10.1101/629048 — microbiology — Posted on 2019-05-07

2862 Genome Profiling for Aflatoxin B1 Resistance in Saccharomyces cerevisiae Reveals a Role for the CSM2/SHU Complex in Tolerance of Aflatoxin B1-associated DNA Damage

Fasullo, M. T.; St. John, N.; Freedland, J.; Baldino, H.; Cera, C.; Doyle, F.; Begley, T.

10.1101/629436 — genomics — Posted on 2019-05-07

2863 High diagnostic yield and clinical utility of WES for patients with undiagnosed genetic disorder by automating variant interpretation

Seo, G. H.; Park, J.-Y.; Kim, S.; Lee, J.; Oh, A.; Lee, Y.; Choi, J.; Kim, T.; Keum, C.; Lee, B. h.

10.1101/628438 — genetics — Posted on 2019-05-07

2864 Different energetic diets affect the maintenance of Apis mellifera L. colonies during off-season

de Oliveira, G. P.; Kadri, S.; Benaglia, B. G. E.; Ribolla, P. E. M.; Orsi, R. O.

10.1101/629154 — genetics — Posted on 2019-05-07

2865 Differentiation between wild and domesticated Ungulates based on ecological niches

Hendrix, E.; Vos, R. A.

10.1101/629188 — evolutionary biology — Posted on 2019-05-07

2866 Interaction network structure maximizes community-level plant reproduction success via niche complementarity

Magrach, A.; Molina, F. P.; Bartomeus, I.

10.1101/629931 — ecology — Posted on 2019-05-07

2867 A reference model for the combination of an arbitrary number of drugs: A generalization of the Bliss independence model

De Mulder, W.; Kuiper, M.; Flobak, A.

10.1101/630616 — cancer biology — Posted on 2019-05-07

2868 Universal and naked-eye gene detection platform based on CRISPR/Cas12a/13a system

Yuan, C.-Q.; Tian, T.; Sun, J.; Hu, M.-L.; Wang, X.-S.; Xiong, E.-H.; Cheng, M.; Bao, Y.-J.; Lin, W.; Jiang, J.-M.; Yang, C.-W.; Chen, Q.; Wang, H.; Wang, X.-R.; Deng, X.-B.; Liao, X.-P.; Liu, Y.-H.; Zhang, G.-H.; Zhou, X.

10.1101/615724 — bioengineering — Posted on 2019-05-07

2869 Organohalide-respiring Desulfoluna species isolated from marine environments

Peng, P.; Goris, T.; Lu, Y.; Nijsse, B.; Burrichter, A.; Schleheck, D.; Koehorst, J. J.; Liu, J.; Sipkema, D.; Damste, J. S. S.; Stams, A. J. M.; Haggblom, M. M.; Smidt, H.; Atashgahi, S.

10.1101/630186 — microbiology — Posted on 2019-05-07

2870 Trophoblast proliferation, migration, and invasion is regulated by the miR-195/EGFR signaling pathway in recurrent spontaneous abortion patients

Bai, X.; Zheng, C.; Ren, N.

10.1101/630590 — cell biology — Posted on 2019-05-07

2871 Evaluating the performance of 3-tissue constrained spherical deconvolution pipelines for within-tumor tractography

Aerts, H.; Dhollander, T.; Marinazzo, D.

10.1101/629873 — neuroscience — Posted on 2019-05-07

2872 Global ribosome profiling reveals that mutant huntingtin stalls ribosomes and represses protein synthesis independent of fragile X mental retardation protein

Subramaniam, S.; Eshraghi, M.; Karunadharma, P.; Blin, J.; Shahani, N.; Ricci, E.; Michel, A.; Urban, N.; Galli, N.; Rajendra Rao, S.; Sharma, M.; Florescu, K.

10.1101/629667 — neuroscience — Posted on 2019-05-07

2873 Relationships between MA-RNA binding in cells and suppression of HIV-1 Gag mislocalization to intracellular membranes

Thornhill, D.; Olety, B.; Ono, A.

10.1101/629998 — microbiology — Posted on 2019-05-07

2874 Amplification of the V5 - V8 region of the 16S rRNA gene effectively speciates medically important genital tract Lactobacillus species in the upper female genital tract

O'Callaghan, J. L.; Willner, D.; Buttini, M.; Huygens, F.; Pelzer, E. S.

10.1101/630004 — microbiology — Posted on 2019-05-07

2875 Genome rearrangements and megaplasmid loss in the filamentous bacterium Kitasatospora viridifaciens are associated with protoplast formation and regeneration

Ramijan, K.; Zhang, Z.; van Wezel, G.; Claessen, D.

10.1101/629089 — microbiology — Posted on 2019-05-07

2876 Health literacy assessment of primary care patients in a Lower Middle Income Country

Dreshaj, D.; Pasha, F.; Ismaili, A.; Sopjani, I.; Dreshaj, S.

10.1101/630533 — epidemiology — Posted on 2019-05-07

2877 Association of simple renal cysts and chronic kidney disease with large abdominal aortic aneurysm

Hinterseher, I.; Miszczuk, M.; Müller, V.; Althoff, C. E.; Stroux, A.; Widhalm, D.; Dobberstein, A.; Greiner, A.; Kuivaniemi, H.

10.1101/630558 — epidemiology — Posted on 2019-05-07

2878 Somatic cell nuclear transfer in non-enucleated goldfish oocytes: understanding DNA fate during meiosis resumption and first cellular division.

Rouillon, C.; Depince, A.; Chenais, N.; Le Bail, P.-Y.; Labbe, C.

10.1101/630194 — developmental biology — Posted on 2019-05-07

2879 A low-cost, rapidly integrated debubbler (RID) module for microfluidic cell culture applications

Williams, M. J.; Lee, N. K.; Mylott, J. A.; Mazzola, N.; Ahmed, A.; Abhyankar, V. V.

10.1101/629642 — bioengineering — Posted on 2019-05-07

2880 Effect of high-salt diet on mean arterial pressure, renal epithelial sodium channels and aquaporins subunits expression levels in Spontaneously Hypertensive Rats

Hoe, S. Z.; Ramachandran, C. D.; Gholami, K.; Lam, S.-K.; Mustafa, M. R.

10.1101/630491 — physiology — Posted on 2019-05-07

2881 Base editing in Streptomyces with Cas9-deaminase fusions

Zhong, Z.; Guo, J.; Deng, L.; Chen, L.; Wang, J.; Li, S.; Xu, W.; Deng, Z.; Sun, Y.

10.1101/630137 — microbiology — Posted on 2019-05-07

2882 Amplification of genomic regions harbouring genes with dose-limiting effects provides selection pressure for acquiring aberrant epigenetic silencing in ovarian cancer

Bonito, N.; Eringyte, I.; Masrour, N.; Wilhelm-Benartzi, C. S.; Brown, R.; Curry, E.

10.1101/630228 — cancer biology — Posted on 2019-05-07

2883 Modeling glioblastoma invasion using human brain organoids and single-cell transcriptomics

Krieger, T. G.; Tirier, S. M.; Park, J.; Eisemann, T.; Peterziel, H.; Angel, P.; Eils, R.; Conrad, C.

10.1101/630202 — cancer biology — Posted on 2019-05-07

2884 COSPLAY: An expandable toolbox for combinatorial and swift generation of expression plasmids in yeast

Goulev, Y.; Matifas, A.; Heyer, V.; REINA-SAN-MARTIN, B.; charvin, g.

10.1101/630277 — molecular biology — Posted on 2019-05-07

2885 Pseudomonas aeruginosa lectin LecB impairs keratinocyte fitness by abrogating growth factor signalling

Landi, A.; Mari, M.; Wolf, T.; Kleiser, S.; Gretzmeier, C.; Wilhelm, I.; Kiritsi, D.; Thuenauer, R.; Geiger, R.; Nystroem, A.; Reggiori, F.; Claudinon, J.; Roemer, W.

10.1101/629972 — cell biology — Posted on 2019-05-07

2886 Cellular and molecular characterization of multiplex autism in human induced pluripotent stem cell-derived neurons

Kroll, K. L.; Lewis, E. M. A.; Meganathan, K.; Baldridge, D.; Gontarz, P.; Zhang, B.; Bonni, A.; Constantino, J.

10.1101/620807 — neuroscience — Posted on 2019-05-07

2887 MEK1/2 in Rhabdomyosarcoma

Crawford, K. A.; Cleary, M. M.; Ricker, C. A.; Svalina, M. N.; Shern, J. F.; Khan, J.; Chen, H.-I. H.; Berlow, N. E.; Keller, C. A.; Li, G. A.

10.1101/629766 — cancer biology — Posted on 2019-05-07

2888 Hypoxia in cancer chemo- and immunotherapy: foe or friend?

Vitos, N.; Chen, S.; Mathur, S.; Chamseddine, I.; Rejniak, K. A.

10.1101/629907 — systems biology — Posted on 2019-05-07

2889 Noncanonical scaffolding of Gαi and β-arrestin by G protein-coupled receptors

Smith, J. S.; Pack, T. F.; Inoue, A.; Lee, C.; Xiong, X.; Zheng, K.; Kahsai, A. W.; Choi, I.; Ma, Z.; Levitan, I. M.; Rochelle, L. K.; Staus, D. P.; Snyder, J. C.; Caron, M. G.; Rajagopal, S.

10.1101/629576 — cell biology — Posted on 2019-05-07

2890 Structural basis of TFIIH activation for nucleotide excision repair

Kokic, G.; Chernev, A.; Tegunov, D.; Dienemann, C.; Urlaub, H.; Cramer, P.

10.1101/628032 — molecular biology — Posted on 2019-05-07

2891 Protein Expression Patterns in ovarian cancer cells Associated with Monofunctional Platinums Treatment

Arzuman, L.; Moni, M. A.; Beale, P.; Quinn, J. Q.; Molloy, M.; Quinn, J. M. W.; Huq, F.

10.1101/628958 — cancer biology — Posted on 2019-05-07

2892 Deep Learning Approach to Identifying Breast Cancer Subtypes Using High-Dimensional Genomic Data

Chen, R.; Yang, L.; Goodison, S.; Sun, Y.

10.1101/629865 — bioinformatics — Posted on 2019-05-07

2893 Calcium entry does not drive fast mechanotransduction adaptation in cochlear hair cells

Caprara, G. A.; Mecca, A. A.; Wang, Y.; Ricci, A. J.; Peng, A. W.

10.1101/629626 — biophysics — Posted on 2019-05-07

2894 A highly-selective chloride microelectrode based on a mercuracarborand anion carrier

DiFranco, M.; Quinonez, M.; Dziedzic, R. M.; Spokoyny, A. M.; Cannon, S. C.

10.1101/629691 — biophysics — Posted on 2019-05-07

2895 Heme minimizes Parkinson’s disease-associated toxicity by inducing a conformational distortion in the oligomers of alpha-Synuclein

Chakraborty, R.; Dey, S.; Paul, S. S.; Sil, P.; Sengupta, J.; Chattopadhyay, K.

10.1101/629238 — biophysics — Posted on 2019-05-07

2896 An in vivo inflammatory loop potentiates KRAS blockade

Stathopoulos, G. T.; Arendt, K. A.; Ntaliarda, G.; Armenis, V.; Kati, D.; Henning, C.; Giotopoulou, G.; Pepe, M. A.; Klotz, L. V.; Lamort, A. S.; Hatz, R. A.; Kobold, S.

10.1101/629139 — cancer biology — Posted on 2019-05-07

2897 High-speed motility originates from cooperatively pushing and pulling flagella bundles in bilophotrichous bacteria

Bente, K.; Mohammadinejad, S.; Charsooghi, M. A.; Bachmann, F.; Codutti, A.; Lefevre, C. T.; Klumpp, S.; Faivre, D.

10.1101/629121 — biophysics — Posted on 2019-05-07

2898 Origin of bidirectionality of cerebrospinal fluid flow and impact on long-range transport between brain and spinal cord

Wyart, C.; Thouvenin, O.; Keiser, L.; Cantaut-Belarif, Y.; Carbo Tano, M.; Verweij, F.; Jurisch-Yaksi, N.; Bardet, P.-L.; van Niel, G.; Gallaire, F.

10.1101/627166 — biophysics — Posted on 2019-05-07

2899 GENETIC RESILIENCE OF A ONCE ENDANGERED SPECIES, TIBETAN ANTELOPE (Pantholops hodgsonii)

Shi, Y.; Chen, J.; Su, J.; Zhang, T.; Wasser, S. K.

10.1101/628727 — genetics — Posted on 2019-05-06

2900 Adaptive metabolic strategies in consumer-resource models

Pacciani-Mori, L.; Giometto, A.; Suweis, S.; Maritan, A.

10.1101/385724 — biophysics — Posted on 2019-05-06

2901 Assessment of patient-specific efficacy of chemo- and targeted-therapies: a micropharmacology approach

Karolak, A.; Huffstutler, B.; Khan, Z.; Rejniak, K. A.

10.1101/236653 — systems biology — Posted on 2019-05-06

2902 Performance of neural network basecalling tools for Oxford Nanopore sequencing

Wick, R. R.; Judd, L. M.; Holt, K. E.

10.1101/543439 — bioinformatics — Posted on 2019-05-06

2903 Zebrafish (Danio rerio) behavioral laterality predicts increased short-term avoidance memory but not stress-reactivity responses

Dotto Fontana, B.; Cleal, M.; Clay, J.; Parker, M. O.

10.1101/565309 — animal behavior and cognition — Posted on 2019-05-06

2904 Rotavirus Calcium Dysregulation Manifests as Dynamic Calcium Signaling in the Cytoplasm and Endoplasmic Reticulum

Chang-Graham, A. L.; Perry, J. L.; Strtak, A. C.; Ramachandran, N. K.; Criglar, J. M.; Philip, A. A.; Patton, J. T.; Estes, M. K.; Hyser, J. M.

10.1101/627877 — microbiology — Posted on 2019-05-06

2905 Residual avoidance: a new consistent and repeatable readout of chronic stress-induced conflict anxiety reversible by antidepressant treatment

PREVOT, T. D.; Misquitta, K. A.; Fee, C.; Newton, D.; Chatterjee, D.; Nikolova, Y. S.; Sibille, E.; Banasr, M.

10.1101/414029 — animal behavior and cognition — Posted on 2019-05-06

2906 Developmental exposure to perfluorooctane sulfonate (PFOS) and perfluorooctanoic acid (PFOA) selectively decreases brain dopamine levels in northern leopard frogs

Foguth, R. M.; Flynn, R. W.; de Perre, C.; Iacchetta, M.; Lee, L. S.; Sepulveda, M. S.; Cannon, J.

10.1101/623900 — pharmacology and toxicology — Posted on 2019-05-06

2907 A rapid and accurate MinION-based workflow for tracking species biodiversity in the field

Maestri, S.; Cosentino, E.; Paterno, M.; Freitag, H.; Garces, J. M.; Marcolungo, L.; Alfano, M.; Njunjic, I.; Schilthuizen, M.; Slik, F.; Menegon, M.; Rossato, M.; Delledonne, M.

10.1101/617019 — genomics — Posted on 2019-05-06

2908 Hydraulic resistance of perivascular spaces in the brain

Tithof, J.; Kelley, D. H.; Mestre, H.; Nedergaard, M.; Thomas, J. H.

10.1101/522409 — neuroscience — Posted on 2019-05-06

2909 Differences in sodium channel densities in the apical dendrites of pyramidal cells of the electrosensory lateral line lobe.

Motipally, S. I.; Allen, K. M.; Williamson, D. K.; Marsat, G.

10.1101/592758 — neuroscience — Posted on 2019-05-06

2910 A High-Quality Genome Assembly from a Single, Field collected Spotted Lanternfly (Lycorma delicatula) using the PacBio Sequel II System

Kingan, S. B.; Urban, J.; Lambert, C. C.; Baybayan, P.; Childers, A. K.; Coates, B. S.; Scheffler, B.; Hackett, K.; Korlach, J.; Geib, S. B.

10.1101/627679 — genomics — Posted on 2019-05-06

2911 Using Deep Learning to Annotate the Protein Universe

Bileschi, M. L.; Belanger, D.; Bryant, D. H.; Sanderson, T.; Carter, B.; Sculley, D.; DePristo, M. A.; Colwell, L. J.

10.1101/626507 — bioinformatics — Posted on 2019-05-06

2912 DRPnet - Automated Particle Picking In Cryo-Electron Micrographs Using Deep Regression

Nguyen, N. P.; Ersoy, I.; Gotberg, J.; Bunyak, F.; White, T. A.

10.1101/616169 — molecular biology — Posted on 2019-05-06

2913 Origin of elevational replacements in a clade of nearly flightless birds - most diversity in tropical mountains accumulates via secondary contact following allopatric speciation

Cadena, D.; Cespedes, L. N.

10.1101/606558 — evolutionary biology — Posted on 2019-05-06

2914 EZHIP constrains Polycomb Repressive Complex 2 activity in germ cells

Ragazzini, R.; Perez-Palacios, R.; Baymaz, I.; Diop, S.; Ancelin, K.; Zielinski, D.; Michaud, A.; Givelet, M.; Borsos, M.; Aflaki, S.; Legoix, P.; Jansen, P. W.; Servant, N.; Torres-Padilla, M.-E.; Bourc'His, D.; Fouchet, P.; Vermeulen, M.; Margueron, R.

10.1101/619080 — developmental biology — Posted on 2019-05-06

2915 Transcriptomics supports local sensory regulation in the antennae of the kissing bug Rhodnius prolixus

Latorre Estivalis, J. M.; Sterkel, M.; Ons, S.; Lorenzo, M. G.

10.1101/515353 — neuroscience — Posted on 2019-05-06

2916 Multicellular behavior enables cooperation in microbial cell aggregates

Ebrahimi, A.; Schwartzman, J.; Cordero, O. X.

10.1101/626481 — microbiology — Posted on 2019-05-06

2917 Joint inference and alignment of genome structures enables characterization of compartment-independent reorganization across cell types

Rieber, L.; Mahony, S.

10.1101/545194 — bioinformatics — Posted on 2019-05-06

2918 The cloud forest in the Dominican Republic: diversity and conservation status

Cano Ortiz, A.; Musarella, C. M.; Quinto Canas, R.; Pinar Fuentes, J. C.; Pinto Gomes, C. J.; Cano, E.

10.1101/543892 — plant biology — Posted on 2019-05-06

2919 From bud formation to flowering: transcriptomic state defines the cherry developmental phases of sweet cherry bud dormancy

Vimont, N.; Fouche, M.; Campoy, J. A.; Tong, M.; Arkoun, M.; Yvin, J.-C.; Wigge, P. A.; Dirlewanger, E.; Cortijo, S.; Wenden, B.

10.1101/586651 — plant biology — Posted on 2019-05-06

2920 Nitrogen addition pulse has minimal effect in Wyoming big sagebrush (Artemisia tridentata) communities on the Pinedale Anticline, Wyoming (USA)

Beltz, C. W.; Mobley, M. L.; Burke, I. C.

10.1101/446294 — ecology — Posted on 2019-05-06

2921 Comparison between diffusion MRI tractography and histological tract-tracing of cortico-cortical structural connectivity in the ferret brain

Delettre, C.; Messe, A.; Dell, L.-A.; Foubet, O.; Heuer, K.; Larrat, B.; Meriaux, S.; Mangin, J.-F.; Reillo, I.; de Juan Romero, C.; Borrell, V.; Toro, R.; Hilgetag, C. C.

10.1101/517136 — neuroscience — Posted on 2019-05-06

2922 RNAIndel: a machine-learning framework for discovery of somatic coding indels using tumor RNA-Seq data

Hagiwara, K.; Ding, L.; Edmonson, M. N.; Rice, S. V.; Newman, S.; Meshinchi, S.; Ries, R. E.; Rusch, M.; Zhang, J.

10.1101/512749 — bioinformatics — Posted on 2019-05-06

2923 Adaptive metabolic strategies in consumer-resource models

Pacciani-Mori, L.; Giometto, A.; Suweis, S.; Maritan, A.

10.1101/385724 — biophysics — Posted on 2019-05-06

2924 Disease networks and their contribution to disease understanding and drug repurposing: Evolution of the concept, techniques and data sources

Garcia del Valle, E.; Lagunes Garcia, G.; Prieto Santamaria, L.; Zanin, M.; Menasalvas Ruiz, E.; Rodriguez Gonzalez, A.

10.1101/415257 — bioinformatics — Posted on 2019-05-06

2925 The cap size and shape of Arabidopsis thaliana primary roots impact the root responses to an increase in medium strength

Roue, J.; Chauvet, H.; Brunel-Michac, N.; Bizet, F.; Moulia, B.; Badel, E.; Legue, V.

10.1101/378828 — plant biology — Posted on 2019-05-06

2926 Cytomegalovirus infection is a risk factor for TB disease in Infants

Muller, J.; Tanner, R.; Matsumiya, M.; Snowden, M. A.; Landry, B.; Satti, I.; Harris, S. A.; O'Shea, M. K.; Stockdale, L.; Marsay, L.; Chomka, A.; Harrington-Kandt, R.; Manjaly Thomas, Z.-R.; Naranbhai, V.; Stylianou, E.; Kimbung Mbandi, S.; Hatherill, M.; Hussey, G.; Mahomed, H.; Tameris, M.; McClain, J. B.; Evans, T. G.; Hanekom, W. A.; Scriba, T. J.; McShane, H.; Fletcher, H. A.

10.1101/222646 — immunology — Posted on 2019-05-06

2927 Influence of nanopillar arrays on fibroblast motility, adhesion and migration mechanisms

Beckwith, K. S.; Ullmann, S.; Vinje, J.; Sikorski, P.

10.1101/617001 — biophysics — Posted on 2019-05-06

2928 PROMO: An interactive tool for analyzing clinically-labeled multi-omic cancer datasets

Netanely, D.; Stern, N.; Laufer, I.; Shamir, R.

10.1101/629584 — bioinformatics — Posted on 2019-05-06

2929 Predicting late-onset Alzheimer’s disease from genomic data using deep neural networks

de Velasco Oriol, J.; Vallejo Clemente, E. E.; Estrada, K.; The Alzheimer's Disease Neuroimaging Initiative,

10.1101/629402 — bioinformatics — Posted on 2019-05-06

2930 Correlative SMLM and electron tomography reveals endosome nanoscale domains

Franke, C.; Repnik, U.; Segeletz, S.; Brouilly, N.; Verbavatz, J.-M.; Kalaidzidis, Y.; Zerial, M.

10.1101/629147 — cell biology — Posted on 2019-05-06

2931 DNA sequence is a major determinant of tetrasome dynamics

Ordu, O.; Lusser, A.; Dekker, N. H.

10.1101/629485 — biophysics — Posted on 2019-05-06

2932 DEN-IM: Dengue Virus identification from shotgun and targeted metagenomics

Mendes, C. I.; Lizarazo, E.; Machado, M. P.; Silva, D. N.; Tami, A.; Ramirez, M.; Couto, N.; Rossen, J. W. A.; Carrico, J. A.

10.1101/628073 — bioinformatics — Posted on 2019-05-06

2933 Estimation of a time-varying apparent infection rate from plant disease progress curves: a particle filter approach

Alves, K. S.; Moraes, W. B.; Silva, W. B.; Del Ponte, E. M.

10.1101/625822 — epidemiology — Posted on 2019-05-06

2934 Alpha oscillations govern interhemispheric spike timing coordination in the honey bee brain

Popov, T.; Szyszka, P.

10.1101/628867 — neuroscience — Posted on 2019-05-06

2935 Using selection by non-antibiotic stressors to sensitize bacteria to antibiotics

Maltas, J.; Krasnick, B.; Wood, K. B.

10.1101/628834 — microbiology — Posted on 2019-05-06

2936 Linking patterns of genetic variation to processes of diversification in Malaysian torrent frogs (Anura: Ranidae: Amolops): a landscape genomics approach

Chan, K. O.; Brown, R.

10.1101/628891 — evolutionary biology — Posted on 2019-05-06

2937 Discovery of biased orientation of human DNA motif sequences affecting enhancer-promoter interactions and transcription of genes

Osato, N.

10.1101/290825 — bioinformatics — Posted on 2019-05-06

2938 Spontaneous activity generated within the olfactory bulb establishes the discrete wiring of mitral cell dendrites

Fujimoto, S.; Leiwe, M. N.; Sakaguchi, R.; Muroyama, Y.; Kobayakawa, R.; Kobayakawa, K.; Saito, T.; Imai, T.

10.1101/625616 — neuroscience — Posted on 2019-05-06

2939 Concerted localization resets precede YAP-dependent transcription

Franklin, J. M.; Ghosh, R. P.; Shi, Q.; Liphardt, J. T.

10.1101/539049 — biophysics — Posted on 2019-05-06

2940 Using Earth Mover’s Distance for Viral Outbreak Investigations

Melnyk, A.; Knyazev, S.; Khudyakov, Y.; Vannberg, F.; Bunimovich, L.; Skums, P.; Zelikovsky, A.

10.1101/628859 — bioinformatics — Posted on 2019-05-06

2941 Anterior corpus callosum modulates symmetric forelimb movements during spontaneous food handling behavior of rats.

Igarashi, M.; Akamine, Y.; Wickens, J. R.

10.1101/628248 — neuroscience — Posted on 2019-05-06

2942 Longevity of growth-arrested bacteria requires protein synthesis and a stringent response

Yin, L.; Ma, H.; Nakayasu, E. S.; Payne, S. H.; Morris, D. R.; Harwood, C. S.

10.1101/628826 — microbiology — Posted on 2019-05-06

2943 Reduction of Bacillus cereus Biofilms on Stainless Steel Surfaces by Pestalotiopsis sp. Culture Crude Extract

De Jesus, R. S.; Dedeles, G.; Research Center for Natural and Applied Sciences,

10.1101/628990 — microbiology — Posted on 2019-05-06

2944 GENETIC RESILIENCE OF A ONCE ENDANGERED SPECIES, TIBETAN ANTELOPE (Pantholops hodgsonii)

Shi, Y.; Chen, J.; Su, J.; Zhang, T.; Wasser, S. K.

10.1101/628727 — genetics — Posted on 2019-05-06

2945 To Improve Protein Sequence Profile Prediction through Image Captioning on Pairwise Residue Distance Map

Chen, S.; Sun, Z.; Lu, Y.; Zhao, H.; Yang, Y.

10.1101/628917 — bioinformatics — Posted on 2019-05-06

2946 Read-SpaM: assembly-free and alignment-free comparison of bacterial genomes with low sequencing coverage

Lau, A. K.; Leimeister, C.-A.; Dörrer, S.; Gerth, M.; Bleidorn, C.; Morgenstern, B.

10.1101/550632 — bioinformatics — Posted on 2019-05-06

2947 Fine-scale ecological and transcriptomic data reveal niche differentiation of an allopolyploid from diploid parents in Cardamine

Akiyama, R.; Sun, J.; Hatakeyama, M.; Lischer, H. E. L.; Briskine, R. V.; Hay, A.; Gan, X.; Tsiantis, M.; Kudoh, H.; Kanaoka, M. M.; Sese, J.; Shimizu, K. K.; Shimizu-Inatsugi, R.

10.1101/600783 — plant biology — Posted on 2019-05-06

2948 Efficient and accurate prediction of transmembrane topology from amino acid sequence only

Wang, Q.; Ni, C.; Li, Z.; Li, X.; Han, R.; Zhao, F.; Xu, J.; Gao, X.; Wang, S.

10.1101/627307 — bioinformatics — Posted on 2019-05-06

2949 Modeling ribosome dwell times and relationships with tRNA loading and codon usage in mammals

Gobet, C.; Weger, B.; Marquis, J.; Martin, E.; Gachon, F.; Naef, F.

10.1101/551838 — systems biology — Posted on 2019-05-06

2950 Multiplex immunofluorescence methods in neurodegenerative diseases

Ehrenberg, A. J.; Morales, D. O.; Tejedor, J. S.; Mulder, J.; Grinberg, L. T.

10.1101/533547 — pathology — Posted on 2019-05-06

2951 Dysregulated Oscillatory Connectivity in the Visual System in Autism Spectrum Disorder

Seymour, R. A.; Rippon, G.; Gooding-Williams, G.; Schoffelen, J.-M.; Kessler, K.

10.1101/440586 — neuroscience — Posted on 2019-05-06

2952 Modeling Bottom-Up and Top-Down Attention with a Neurodynamic Model of V1

Berga, D.; Otazu, X.

10.1101/590174 — neuroscience — Posted on 2019-05-06

2953 The impacts of humans on animal genetic diversity worldwide

Millette, K. L.; Fugere, V.; Debyser, C.; Greiner, A.; Chain, F. J. J.; Gonzalez, A.

10.1101/527739 — evolutionary biology — Posted on 2019-05-06

2954 Vertical transmission of sponge microbiota is inconsistent and unfaithful

Bjork, J. R.; Diez, C.; Astudillo-Garcia, C.; Archie, E.; Montoya, J. M.

10.1101/425009 — ecology — Posted on 2019-05-06

2955 Preparation of Artesunate mPEG-PLGA Nanoparticles and Its Application to K562 Apoptosis of cells

Gupta, D.; Reddy, S.

10.1101/628883 — bioengineering — Posted on 2019-05-06

2956 Airway Gene-Expression Classifiers for Respiratory Syncytial Virus (RSV) Disease Severity in Infants

Wang, L.; Chu, C.-Y.; McCall, M. N.; Slaunwhite, C.; Holden-Wiltse, J.; Corbett, A.; Falsey, A. R.; Topham, D. J.; Caserta, M. T.; Mariani, T. J.; Walsh, E. E.; Qiu, X.

10.1101/628701 — immunology — Posted on 2019-05-05

2957 The structure of the yeast Ctf3 complex

Hinshaw, S. M.; Dates, A. N.; Harrison, S.

10.1101/628149 — cell biology — Posted on 2019-05-05

2958 Insect pollination is an ecological process involved in the assembly of the seed microbiota

Prado, A.; Marolleau, B.; Vaissiere, B. E.; Barret, M.; Torres Cortes, G.

10.1101/626895 — microbiology — Posted on 2019-05-05

2959 The genetic architecture of helminth-specific immune responses in a wild population of Soay sheep (Ovis aries)

Sparks, A. M.; Watt, K.; Sinclair, R.; Pilkington, J. G.; Pemberton, J. M.; McNeilly, T. N.; Nussey, D. H.; Johnston, S. E.

10.1101/628271 — genetics — Posted on 2019-05-05

2960 Machine learning-based detection of insertions and deletions in the human genome

Curnin, C.; Goldfeder, R. L.; Marwaha, S.; Bonner, D.; Waggott, D.; Undiagnosed Diseases Network, ; Wheeler, M. T.; Ashley, E. A.

10.1101/628222 — bioinformatics — Posted on 2019-05-05

2961 Population receptive field and connectivity properties of the early visual cortex in human albinism

Ahmadi, K.; Herbik, A.; Wagner, M.; Kanowski, M.; Thieme, H.; Hoffmann, M. B.

10.1101/627265 — neuroscience — Posted on 2019-05-05

2962 No evidence for accelerated brain aging in patients with chronic non-cancer pain

Soros, P.; Bantel, C.

10.1101/627935 — neuroscience — Posted on 2019-05-05

2963 Unexpected activity of oral fosfomycin against resistant strains of Escherichia coli in murine pyelonephritis.

Pourbaix, A.; Guerin, F.; Burdet, C.; Massias, L.; Chau, F.; Cattoir, V.; Fantin, B. R.

10.1101/627984 — microbiology — Posted on 2019-05-05

2964 Patterns of putative gene loss suggest rampant developmental system drift in nematodes

Woodruff, G. C.

10.1101/627620 — evolutionary biology — Posted on 2019-05-05

2965 A Nature-based solution in practice: ecological and economic modelling shows pollinators outperform agrochemicals in oilseed crop production

Catarino, R.; Bretagnolle, V.; Perrot, T.; Vialloux, F.; Gaba, S.

10.1101/628123 — ecology — Posted on 2019-05-05

2966 PP1 and PP2A use opposite phospho-dependencies to control distinct processes at the kinetochore

Smith, R. J.; Cordeiro, M. H.; Davey, N. E.; Vallardi, G.; Ciliberto, A.; Gross, F.; Saurin, A. T.

10.1101/610808 — cell biology — Posted on 2019-05-05

2967 DRPnet - Automated Particle Picking In Cryo-Electron Micrographs Using Deep Regression

Nguyen, N. P.; Ersoy, I.; Gotberg, J.; Bunyak, F.; White, T. A.

10.1101/616169 — molecular biology — Posted on 2019-05-05

2968 The impacts of humans on animal genetic diversity worldwide

Millette, K. L.; Fugère, V.; Debyser, C.; Greiner, A.; Chain, F. J. J.; Gonzalez, A.

10.1101/527739 — evolutionary biology — Posted on 2019-05-05

2969 Dynamic-parameter movement models reveal drivers of migratory pace in a soaring bird

Eisaguirre, J.; Auger-Methe, M.; Barger, C.; Lewis, S.; Booms, T.; Breed, G.

10.1101/465427 — ecology — Posted on 2019-05-05

2970 CROSSalive: a web server for predicting the in vivo structure of RNA molecules

Delli Ponti, R.; Armaos, A.; Tartaglia, G. G.

10.1101/626085 — bioinformatics — Posted on 2019-05-05

2971 ISOLATION AND CHARACTERIZATION OF {Phi}GF1, A MORPHOTYPE C3 BACTERIOPHAGE THAT INFECTS Escherichia coli

Punil, R.; Talledo, M. A.; Arcondo, M.; Suarez, K.; Zumaeta, K.

10.1101/627976 — microbiology — Posted on 2019-05-05

2972 Modeling cell infection via virus-producing cells rather than free infectious virus significantly improves fits of an in vitro viral kinetic data

Bernhauerova, V.; Rezelj, V. V.; Laura, L. I.; Vignuzzi, M.

10.1101/627968 — microbiology — Posted on 2019-05-05

2973 Updated Database and Evolutionary Dynamics of U12-Type Introns

Moyer, D.; Larue, G. E.; Hershberger, C. E.; Roy, S. W.; Padgett, R. A.

10.1101/620658 — genomics — Posted on 2019-05-05

2974 Error correction is driven by direct competition between microtubules for interaction with a kinetochore

Doodhi, H.; Kasciukovic, T.; Gierlinski, M.; Li, S.; Clayton, L.; Tanaka, T. U.

10.1101/455873 — cell biology — Posted on 2019-05-05

2975 Individual variation of the dark-background-contingent upshift of gaze: effect of past habituation

Spivak, O.; Thier, P.; Barash, S.

10.1101/628610 — neuroscience — Posted on 2019-05-05

2976 A haplotype-resolved draft genome of the European sardine (Sardina pilchardus)

Louro, B.; De Moro, G.; Garcia, C. M. E. V. R.; Cox, C.; Verissimo, A.; Sabatino, S. J.; Santos, A. M.; Canario, A. V. M.

10.1101/441774 — genomics — Posted on 2019-05-05

2977 The persimmon genome reveals clues to the evolution of a lineage-specific sex determination system in plants

Akagi, T.; Shirasawa, K.; Nagasaki, H.; Hirakawa, H.; Tao, R.; Comai, L.; Henry, I. M.

10.1101/628537 — evolutionary biology — Posted on 2019-05-05

2978 Adaptive substitutions underlying cardiac glycoside insensitivity in insects exhibit epistasis in vivo.

Taverner, A. M.; Yang, L.; Barile, Z. J.; Becky, L.; Peng, J.; Pinharanda, A.; Rao, A.; Roland, B. P.; Talsma, A. D.; Wei, D.; Petschenka, G.; Palladino, M. J.; Andolfatto, P.

10.1101/621185 — evolutionary biology — Posted on 2019-05-05

2979 Accessible and reproducible mass spectrometry imaging data analysis in Galaxy

Foell, M. C.; Moritz, L.; Wollmann, T.; Stillger, M.; Vockert, N.; Werner, M.; Bronsert, P.; Rohr, K.; Gruening, B.; Schilling, O.

10.1101/628719 — bioinformatics — Posted on 2019-05-05

2980 Epigenetic Effects of Exposure to Insecticide on Early Differentiation of Mouse Embryonic Stem Cells

Wang, W.; Otsuka, S.; Nansai, H.; Ito, T.; Abe, K.; Nakao, Y.; Ohgane, J.; Yoneda, M.; Sone, H.

10.1101/628487 — pharmacology and toxicology — Posted on 2019-05-05

2981 The Dynamics of Attention Shifts Among Concurrent Speech in a Naturalistic Multi-Speaker Virtual Environment

Zion Golumbic, E.; Shavit-Cohen, K.

10.1101/626564 — neuroscience — Posted on 2019-05-05

2982 Successive passaging of a plant-associated microbiome reveals robust habitat and host genotype-dependent selection

Morella, N. M.; Weng, F. C.-H.; Joubert, P. M.; Metcalf, C. J. E.; Lindow, S.; Koskella, B.

10.1101/627794 — microbiology — Posted on 2019-05-05

2983 Metabolic mechanisms of nitrogen substrate utilisation in three rhizosphere bacterial strains investigated using quantitative proteomics

Jacoby, R. P.; Succurro, A.; Kopriva, S.

10.1101/627992 — microbiology — Posted on 2019-05-05

2984 Population structure of Apodemus flavicollis and comparison to Apodemus sylvaticus in northern Poland based on whole-genome genotyping with RAD-seq

Martin Cerezo, M. L.; Kucka, M.; Zub, K.; Chan, Y. F.; Bryk, J.

10.1101/625848 — genomics — Posted on 2019-05-05

2985 A new role for Notch in control of polarity and asymmetric cell division of developing T cells

Charnley, M.; Ludford-Menting, M.; Pham, K.; Russell, S. M.

10.1101/628602 — cell biology — Posted on 2019-05-05

2986 Fat SIRAH: Coarse-grained phospholipids to explore membrane-protein dynamics.

Barrera, E. E.; Machado, M. R.; Pantano, S.

10.1101/627570 — biophysics — Posted on 2019-05-05

2987 C. elegans RHY-1 and CYSL-1 act independently of HIF-1 to promote survival in hydrogen sulfide.

Horsman, J. W.; Heinis, F. I.; Miller, D. L.

10.1101/628784 — biochemistry — Posted on 2019-05-05

2988 Expanded Scope of Practice Fellowships for Radiologists: a Survey of Interest Amongst Current Canadian Radiology Residents

Barfett, J.; Colak, E.; Smith, C. U.; Vlachou, P.; Mnatzakanian, A.; Lin, H. M.; Bartlett, E.; Moody, A.

10.1101/626770 — scientific communication and education — Posted on 2019-05-05

2989 Dopamine deficiency is associated with risk aversion but not loss aversion in Parkinson’s disease

Cherkasova, M.; Corrow, J. C.; Taylor, A.; Yeung, S. C.; Stubbs, J. L.; McKeown, M. J.; Appel-Cresswell, S.; Stoessl, A. J.; Barton, J. J.

10.1101/625467 — neuroscience — Posted on 2019-05-05

2990 Density-Weighted Concentric Ring Trajectory using simultaneous multi-band acceleration: 3D Metabolite-cycled Magnetic Resonance Spectroscopy Imaging at 3 T

Emir, U.; Xia, P.; Chiew, M.; Dydak, U.; Thomas, A.; Zhou, X.

10.1101/628594 — neuroscience — Posted on 2019-05-05

2991 Fundamental Law of Memory Recall

Naim, M.; Katkov, M.; Romani, S.; Tsodyks, M.

10.1101/510750 — neuroscience — Posted on 2019-05-05

2992 Chromatin interaction analysis with updated ChIA-PET Tool (V3)

Li, G.; Sun, T.; Chang, H.; Cai, L.; Hong, P.; Zhou, Q.

10.1101/627257 — genomics — Posted on 2019-05-05

2993 A genome-wide analysis of DNA methylation identifies a novel association signal for Lp(a) concentrations in the LPA promoter

Coassin, S.; Hermann-Kleiter, N.; Haun, M.; Wahl, S.; Wilson, R.; Paulweber, B.; Kunze, S.; Meitinger, T.; Strauch, K.; Peters, A.; Waldenberger, M.; Kronenberg, F.; Lamina, C.

10.1101/627273 — genetics — Posted on 2019-05-05

2994 Molecular signatures of selection associated with host-plant differences in Pieris butterflies

Okamura, Y.; Sato, A.; Tsuzuki, N.; Murakami, M.; Heidel-Fischer, H.; Vogel, H.

10.1101/627182 — evolutionary biology — Posted on 2019-05-05

2995 Persistent fibrosis and decreased cardiac function following cardiac injury in the Ctenopharyngodon idella (grass carp)

Long, D. W.; Webb, C. H.; Wang, Y.

10.1101/627752 — evolutionary biology — Posted on 2019-05-05

2996 2D or 3D? How in vitro cell motility is conserved across dimensions, and predicts in vivo invasion

Galarza, S.; Kim, H.; Atay, N.; Peyton, S.; Munson, J. M.

10.1101/627281 — bioengineering — Posted on 2019-05-05

2997 Multi-Scale Network Regression for Brain-Phenotype Associations

Xia, C. H.; Ma, Z.; Cui, Z.; Bzdok, D.; Bassett, D. S.; Satterthwaite, T. D.; Shinohara, R. T.; Witten, D. M.

10.1101/628651 — neuroscience — Posted on 2019-05-05

2998 Efficient small-world and scale-free functional brain networks at rest using k-nearest neighbors thresholding

Forlim, C. G.; Haghiri, S.; Duezel, S.; Kuehn, S.

10.1101/628453 — neuroscience — Posted on 2019-05-05

2999 Microstructural white matter changes and links with subcortical structures in chronic schizophrenia: A free-water imaging approach.

Gurholt, T. P.; Haukvik, U. K.; Lonning, V.; Jönsson, E. G.; Pasternak, O.; Agartz, I.

10.1101/621482 — neuroscience — Posted on 2019-05-05

3000 Corticomuscular control of walking in older people and people with Parkinson’s disease

Roeder, L.; Boonstra, T. W.; Kerr, G. K.

10.1101/628016 — neuroscience — Posted on 2019-05-05

3001 Bdellovibrio and Like Organisms are Predictors of Microbiome Diversity in distinct Host Groups

Johnke, J.; Fraune, S.; Bosch, T. C. G.; Hentschel, U.; Schulenburg, H.

10.1101/627455 — microbiology — Posted on 2019-05-05

3002 Carbon monoxide dehydrogenases enhance bacterial survival by respiring atmospheric CO

Cordero, P. R. F.; Bayly, K.; Leung, P. M.; Huang, C.; Islam, Z. F.; Schittenhelm, R. B.; King, G. M.; Greening, C.

10.1101/628081 — microbiology — Posted on 2019-05-05

3003 Convergent evolution of linked mating-type loci in basidiomycetes: an ancient fusion event that has stood the test of time

Sun, S.; Coelho, M. A.; Heitman, J.; Nowrousian, M.

10.1101/626911 — evolutionary biology — Posted on 2019-05-05

3004 Dual Value System and its assessment scheme for understanding and valuing ecosystem services

Yang, H.; Chen, J.

10.1101/628578 — ecology — Posted on 2019-05-05

3005 Efficient and accurate prediction of transmembrane topology from amino acid sequence only

Wang, Q.; Ni, C.; Li, Z.; Li, X.; Han, R.; Zhao, F.; Xu, J.; Gao, X.; Wang, S.

10.1101/627307 — bioinformatics — Posted on 2019-05-05

3006 Bridging the TB data gap: in silico extraction of rifampicin-resistant tuberculosis diagnostic test results from whole genome sequence data

Ng, K. C. S.; Ngabonziza, J. C. S.; Lempens, P.; de Jong, B. C.; van Leth, F.; Meehan, C. J.

10.1101/628099 — bioinformatics — Posted on 2019-05-05

3007 Targeting study of HepG2 hepatoma cells in vitro by drug-loaded pectin-based nanoparticles

Gupta, D.; Kumar, N.

10.1101/628818 — bioengineering — Posted on 2019-05-05

3008 Characterisation of gastrointestinal helminths and their impact in commercial small-scale chicken flocks in the Mekong Delta of Vietnam

Van, N. T.; Cuong, N. V.; Yen, N. T. P.; Nhi, N.; Kiet, B. T.; Hoang, N. V.; Hien, V. B.; Thwaites, G.; Carrique-Mas, J.; Ribas, A.

10.1101/628024 — systems biology — Posted on 2019-05-05

3009 Combinatorial perturbation analysis reveals divergent regulations of mesenchymal genes during epithelial-to-mesenchymal transition

Watanabe, K.; Panchy, N.; Noguchi, S.; Suzuki, H.; Hong, T.

10.1101/627372 — systems biology — Posted on 2019-05-05

3010 Multicellular behavior enables cooperation in microbial cell aggregates

Schwartzman, J.; Cordero, O. X.; Ebrahimi, A. X.

10.1101/626481 — microbiology — Posted on 2019-05-05

3011 A High-Quality Genome Assembly from a Single, Field collected Spotted Lanternfly (Lycorma delicatula) using the PacBio Sequel II System

Kingan, S. B.; Urban, J.; Lambert, C. C.; Baybayan, P.; Childers, A. K.; Coates, B. B.; Scheffler, B.; Hackett, K.; Korlach, J.; Geib, S. B.

10.1101/627679 — genomics — Posted on 2019-05-05

3012 Screening human embryos for polygenic traits has limited utility

Karavani, E.; Zuk, O.; Zeevi, D.; Atzmon, G.; Barzilai, N.; Stefanis, N. C.; Hatzimanolis, A.; Smyrnis, N.; Avramopoulos, D.; Kruglyak, L.; Lam, M.; Lencz, T.; Carmi, S.

10.1101/626846 — genetics — Posted on 2019-05-05

3013 The magnitude of neonatal mortality and its predictors in Ethiopia: a systematic review and meta-analysis.

Aynalem, Y. A.; Habtewold, T. D.; Shibabaw, W.; Yirga, T.; Dargie, A.

10.1101/626879 — developmental biology — Posted on 2019-05-05

3014 Differential effects of Doxorubicin and Actinomycin D on the stability of RNA binding proteins, RBM10 and RBM5: Actinomycin D promotes the nuclear speckles targeting of RBM10 and RBM5 through the novel structural elements.

Nishio, K.; Qiao, S.; Chang, K. S.

10.1101/627927 — cell biology — Posted on 2019-05-05

3015 Stochastic modeling of aging cells reveals how damage accumulation, repair, and cell-division asymmetry affect clonal senescence and population fitness

Song, R.; Acar, M.

10.1101/628669 — systems biology — Posted on 2019-05-05

3016 Encoding information in synthetic metabolomes

Kennedy, E.; Arcadia, C. E.; Geiser, J.; Weber, P. M.; Rose, C.; Rubenstein, B. M.; Rosenstein, J. K.

10.1101/627745 — synthetic biology — Posted on 2019-05-05

3017 The Solanum tuberosum GBSSI gene: a target for assessing gene and base editing in tetraploid potato

Veillet, F.; Chauvin, L.; Kermarrec, M. P.; Sevestre, F.; Merrer, M.; Terret, Z.; Szydlowski, N.; Devaux, P.; Gallois, J. L.; Chauvin, J. E.

10.1101/628107 — plant biology — Posted on 2019-05-05

3018 Breast Tumor Cellularity Assessment using Deep Neural Networks

Rakhlin, A.; Shvets, A. A.; Kalinin, A. A.; Tiulpin, A.; Iglovikov, V. I.; Nikolenko, S.

10.1101/628693 — pathology — Posted on 2019-05-05

3019 Induced illusory body ownership in Borderline Personality Disorder

Neustadter, E. S.; Fineberg, S. K.; Leavitt, J.; Carr, M. M.; Corlett, P. R.

10.1101/628131 — neuroscience — Posted on 2019-05-05

3020 Corticostriatal stimulation compensates for medial frontal inactivation during interval timing

Emmons, E. B.; Kennedy, M.; Kim, Y.; Narayanan, N. S.

10.1101/628263 — neuroscience — Posted on 2019-05-05

3021 Multimodal frequency representations are embedded in modality-defined cortical sensory systems

Rahman, M. S.; Barnes, K. A.; Crommett, L. E.; Tommerdahl, M.; Yau, J. M.

10.1101/628305 — neuroscience — Posted on 2019-05-05

3022 Circadian regulation of light-evoked attraction/avoidance in day- vs. night-biting mosquitoes

Baik, L. S.; Nave, C.; Au, D. D.; Guda, T.; Chevez, J. A.; Ray, A.; Holmes, T. C.

10.1101/627588 — neuroscience — Posted on 2019-05-05

3023 Neuromuscular and biomechanical functions subserving finger dexterity in musicians

Kimoto, Y.; Oku, T.; Furuya, S.

10.1101/625558 — neuroscience — Posted on 2019-05-05

3024 Spatial genome re-organization between fetal and adult hematopoietic stem cells

Chen, C.; Yu, W.; Tober, J.; Gao, P.; He, B.; Lee, K.; Trieu, T.; Blobel, G.; Speck, N.; Tan, K.

10.1101/628214 — molecular biology — Posted on 2019-05-05

3025 Myeloid Tribbles 1 induces early atherosclerosis via enhanced foam cell expansion

Johnston, J.; Angyal, A.; Bauer, R.; Hamby, S.; Suvarna, K.; Baidzajevas, K.; Hegedus, Z.; Dear, N.; Turner, M.; The Cardiogenics Consortium, ; Wilson, H.; Goodall, A.; Rader, D. J.; Shoulders, C. C.; Francis, S.; Kiss-Toth, E.

10.1101/615872 — immunology — Posted on 2019-05-05

3026 A Drosophila metainflammation-blood tumor model links aspirin-triggered eicosanoid-like mediators to immune signaling

Govind, S.; Panettieri, S.; Paddibhatla, I.; Chou, J.; Rajwani, R.; Moore, R. S.; Goncharuk, T.; John, G.

10.1101/624197 — immunology — Posted on 2019-05-05

3027 Impaired tumor death receptor signaling drives resistance to CAR T cell therapy

Singh, N.; Shestova, O.; Ravikumar, P.; Hayer, K.; Hong, S. J.; Orlando, E. J.; Mueller, K. T.; Good, C. R.; Berger, S. L.; Shalem, O.; Weitzman, M. D.; Grupp, S. A.; June, C. H.; Gill, S.; Ruella, M.

10.1101/627562 — immunology — Posted on 2019-05-05

3028 Reciprocal requirement of Wnt signaling and SKN-1 underlies cryptic intraspecies variation in an ancient embryonic gene regulatory network

Torres Cleuren, Y. N.; Ewe, C. K.; Chipman, K. C.; Mears, E.; Wood, C. G.; Al-Alami, C.; Alcorn, M.; Turner, T. L.; Joshi, P.; Snell, R. G.; Rothman, J.

10.1101/628495 — genetics — Posted on 2019-05-05

3029 Phenome-wide Mendelian randomization mapping the influence of the plasma proteome on complex diseases

Zheng, J.; Haberland, V.; Baird, D.; Walker, V. M.; Haycock, P. M.; Gutteridge, A. X.; Richardson, T. M.; Staley, J.; Elsworth, B.; Burgess, S.; Sun, B. B.; Danesh, J.; Runz, H.; Maranville, J. C.; Martin, H.; Yarmolinsky, J.; Laurin, C.; Holmes, M. V.; Liu, J.; Estrada, K.; McCarthy, L. C.; Hurle, M.; Waterworth, D. M.; Nelson, M. R.; Butterworth, A. S.; Davey Smith, G.; Hemani, G. V.; Scott, R. A.; Gaunt, T. R.

10.1101/627398 — genetics — Posted on 2019-05-05

3030 A toxin-antidote CRISPR gene drive system for regional population modification

Champer, J.; Lee, Y. L.; Yang, E.; Liu, C.; Clark, A. G.; Messer, P. W.

10.1101/628354 — genetics — Posted on 2019-05-05

3031 Modularity and evolution of flower shape: the role of efficiency, development, and spandrels in Erica

Reich, D.; Berger, A.; von Balthazar, M.; Chartier, M.; Sherafati, M.; Klingenberg, C. P.; Manafzadeh, S.; Staedler, Y. M.

10.1101/628644 — evolutionary biology — Posted on 2019-05-05

3032 Bioinformatic Methods and Bridging of Assay Results for Reliable Tumor Mutational Burden Assessment in Non-Small Cell Lung Cancer

Chang, H.; Sasson, A.; Srinivasan, S.; Golhar, R.; Greenawalt, D. M.; Geese, W. J.; Green, G.; Zerba, K.; Kirov, S.; Szustakowski, J. D.

10.1101/626143 — bioinformatics — Posted on 2019-05-05

3033 Preparation and in vitro release of fluorouracil polylactide glycolide-polyethylene glycol monomethyl ether nanoparticles

Gupta, D.; Shumroni, A.

10.1101/628792 — bioengineering — Posted on 2019-05-05

3034 Calcineurin broadly regulates the initiation of skeletal muscle-specific gene expression by binding target promoters and facilitating the interaction of the SWI/SNF chromatin remodeling enzyme

Witwicka, H.; Nogami, J.; Syed, S. A.; Maehara, K.; Padilla-Benavides, T.; Ohkawa, Y.; Imbalzano, A. N.

10.1101/628768 — molecular biology — Posted on 2019-05-05

3035 Long metabarcoding of the eukaryotic rDNA operon to phylogenetically and taxonomically resolve environmental diversity

Jamy, M.; Foster, R.; Barbera, P.; Czech, L.; Kozlov, A. M.; Stamatakis, A. M.; Bass, D.; Burki, F.

10.1101/627828 — microbiology — Posted on 2019-05-05

3036 Validation and delineation of a locus conferring Fusarium crown rot resistance on 1HL in barley by analysing transcriptomes from multiple pairs of near isogenic lines

Gao, S.; Zheng, Z.; Powell, J.; Habib, A.; Stiller, J.; Zhou, M.; Liu, C.

10.1101/628420 — genetics — Posted on 2019-05-05

3037 Homoploid hybridization signals due to ancestral subdivision: a case study on the D lineage in wheat

Jiang, Y.; Yuan, Z.; Hu, H.; Ye, X.; Zheng, Z.; Wei, Y.; Zheng, Y.-L.; Wang, Y.-G.; Liu, C.

10.1101/628685 — evolutionary biology — Posted on 2019-05-05

3038 Robust Microfabrication of Highly Parallelized Three-Dimensional Microfluidics on Silicon

Yadavali, S.; Lee, D.; Issadore, D.

10.1101/625277 — bioengineering — Posted on 2019-05-05

3039 Psychotic symptoms in 16p11.2 copy number variant carriers

Jutla, A.; Turner, J. B.; Green Snyder, L.; Chung, W. K.; Veenstra-VanderWeele, J.

10.1101/621250 — neuroscience — Posted on 2019-05-05

3040 A Striatal interneuron circuit for continuous target pursuit

Kim, N.; Li, H. E.; Hughes, R. N.; Gallegos, D.; West, A.; Kim, I. H.; Yin, H. H.

10.1101/386490 — neuroscience — Posted on 2019-05-05

3041 Isolation of adipose tissue derived regenerative cells from human subcutaneous tissue with or without the use of an enzymatic reagent

Winnier, G. E.; Valenzuela, N.; Alt, C.; Alt, E. U.

10.1101/485318 — bioengineering — Posted on 2019-05-05

3042 A cellular and spatial map of the choroid plexus across brain ventricles and ages

Dani, N.; Herbst, R.; Habib, N.; Head, J.; Dionne, D.; Nguyen, L.; McCabe, C.; Cui, J.; Shipley, F. B.; Jang, A.; Rodman, C.; Riesenfeld, S.; Zhang, F.; Rozenblatt-Rosen, O.; Regev, A.; Lehtinen, M. K.

10.1101/627539 — neuroscience — Posted on 2019-05-05

3043 Sex classification by resting state brain connectivity

Weis, S.; Patil, K.; Hoffstaedter, F.; Nostro, A.; Yeo, B. T.; Eickhoff, S. B.

10.1101/627711 — neuroscience — Posted on 2019-05-05

3044 Integration of eQTL and Parkinson’s disease GWAS data implicates 11 disease genes

Kia, D. A.; Zhang, D.; Guelfi, S.; Manzoni, C.; Hubbard, L.; United Kingdom Brain Expression Consortium (UKBEC), ; International PD Genomics Consortium (IPDGC), ; Reynolds, R. H.; Botia, J. A.; Ryten, M.; Ferrari, R.; Lewis, P. A.; Williams, N.; Trabzuni, D.; Hardy, J.; Wood, N. W.

10.1101/627216 — neuroscience — Posted on 2019-05-05

3045 Spaniel: analysis and interactive sharing of Spatial Transcriptomics data

Queen, R.; Cheung, K.; Lisgo, S.; Coxhead, J.; Cockell, S.

10.1101/619197 — bioinformatics — Posted on 2019-05-05

3046 Queen honey bees combat heat stress-induced loss of stored sperm viability with ATP-independent heat shock proteins

McAfee, A.; Higo, H.; Underwood, R. M.; Milone, J. P.; Foster, L. J.; Guarna, M. M.; Pettis, J. S.; Tarpy, D. R.

10.1101/627729 — physiology — Posted on 2019-05-05

3047 Two cases of type-a Haemophilus influenzae meningitis within the same week in the same hospital are phylogenetically unrelated but recently exchanged capsule genes

Terrat, Y.; Farnaes, L.; Bradley, J.; Tromas, N.; Shapiro, B. J.

10.1101/619502 — microbiology — Posted on 2019-05-05

3048 Extremely fast and accurate open modification spectral library searching of high-resolution mass spectra using feature hashing and graphics processing units

Bittremieux, W.; Laukens, K.; Noble, W. S.

10.1101/627497 — bioinformatics — Posted on 2019-05-05

3049 Transformation and Integration of Microenvironment Microarray Data Improves Discovery of Latent Effects

Hunt, G. J.; Dane, M. A.; Korkola, J. E.; Heiser, L. M.; Gagnon-Bartsch, J. A.

10.1101/627802 — bioinformatics — Posted on 2019-05-05

3050 The cognitive cost of reducing relapse to cocaine-seeking with mGlu5 allosteric modulators.

Gobin, C.; Schwendt, M.

10.1101/628388 — neuroscience — Posted on 2019-05-05

3051 The reliability of the isotropic fractionator method for counting total cells and neurons

Neves, K.; Menezes Guimaraes, D. M.; Rayee, D.; Valerio-Gomes, B.; Meneses Iack, P.; Lent, R.; Mota, B.

10.1101/627869 — neuroscience — Posted on 2019-05-05

3052 Machine learning-based detection of insertions and deletions in the human genome

Curnin, C.; Goldfeder, R. L.; Marwaha, S.; Bonner, D.; Waggott, D.; Undiagnosed Diseases Network, ; Wheeler, M. T.; Ashley, E. A.

10.1101/628222 — bioinformatics — Posted on 2019-05-05

3053 K. pneumoniae ST258 genomic variability and bacteriophage susceptibility

Venturini, C.; Ben Zakour, N.; Bowring, B.; Morales, S.; Cole, R.; Kovach, Z.; Branston, S.; Kettle, E.; Thomson, N.; Iredell, J.

10.1101/628339 — microbiology — Posted on 2019-05-05

3054 Performance analysis of novel toxin-antidote CRISPR gene drive systems

Champer, J.; Kim, I.; Champer, S. E.; Clark, A. E.; Messer, P. W.

10.1101/628362 — genetics — Posted on 2019-05-05

3055 Correlation of IL-17 level in gingival crevicular fluid of orthodontically induced inflammatory root resorption

Zhou, H.; Liang, X.; Liu, P. a.; Nong, m. d.; Qin, q. y.; Chen, x. l.; Kang, N.

10.1101/627059 — animal behavior and cognition — Posted on 2019-05-05

3056 Reactive oxygen species (ROS) production triggers unconventional secretion of antioxidant enzymes

Cruz-Garcia, D.; Brouwers, N.; Malhotra, V.; Curwin, A. J.

10.1101/628321 — cell biology — Posted on 2019-05-05

3057 Investigating Fibroblast-Induced Collagen Gel Contraction Using a Dynamic Microscale Platform

Zhang, T.; Day, J. H.; Su, X.; Guadarrama, A. G.; Sandbo, N. K.; Esnault, S.; Denlinger, L. C.; Berthier, E.; Theberge, A. B.

10.1101/628230 — cell biology — Posted on 2019-05-05

3058 Subcellular analyses of planarian meiosis implicates a novel, double-membraned vesiculation process in nuclear envelope breakdown

Guo, L.; Guo, F.; Zhang, S.; Yi, K.; McClain, M.; Kuhn, C.-D.; Parmely, T.; Sanchez Alvarado, A.

10.1101/620609 — cell biology — Posted on 2019-05-05

3059 MiR-146a-dependent regulation of CD24/AKT/β-catenin axis drives stem cell phenotype in oral squamous cell carcinoma

Ghuwalewala, S.; Ghatak, D.; Das, S.; Das, P.; Butti, R.; Gorain, M.; Kundu, G. C.; Roychoudhury, S.

10.1101/429068 — cancer biology — Posted on 2019-05-04

3060 Affectively biased competition underlying sustained attention is tuned to rewarding expressions and is not modulated by norepinephrine receptor gene variant

Roberts, K. H.; Manaligod, M. G. M.; Ross, C. J. D.; Mueller, D. J.; Wieser, M. J.; Todd, R. M.

10.1101/442863 — neuroscience — Posted on 2019-05-04

3061 Single-organelle quantification reveals the stoichiometric and structural variability of carboxysomes dependent on the environment

Sun, Y.; Wollman, A.; Huang, F.; Leake, M. C.; Liu, L.

10.1101/568238 — biophysics — Posted on 2019-05-04

3062 Exploratory behavior is associated with microhabitat and evolutionary radiation in Lake Malawi cichlids

Johnson, Z. V.; Moore, E. C.; Wong, R. Y.; Godwin, J. R.; Streelman, J. T.; Roberts, R. B.

10.1101/525378 — animal behavior and cognition — Posted on 2019-05-04

3063 Mitochondrial mass governs the extent of T cell senescence

Callender, L. A.; Carroll, E. C.; Bober, E. A.; Akbar, A. N.; Solito, E.; Henson, S. M.

10.1101/627240 — immunology — Posted on 2019-05-04

3064 Using Deep Learning to Annotate the Protein Universe

Bileschi, M. L.; Belanger, D.; Bryant, D. H.; Sanderson, T.; Carter, B.; Sculley, D.; DePristo, M. A.; Colwell, L. J.

10.1101/626507 — bioinformatics — Posted on 2019-05-04

3065 Inflammation and matrix metalloproteinase 9 (Mmp-9) regulate photoreceptor regeneration in adult zebrafish

Silva, N. J.; Nagashima, M.; Li, J.; Kakuk-Atkins, L.; Ashrafzadeh, M.; Hyde, D. R.; Hitchcock, P. F.

10.1101/518365 — neuroscience — Posted on 2019-05-04

3066 Placental effects on maternal brain revealed by disrupted placental gene expression in mouse hybrids

Arevalo, L.; Campbell, P.

10.1101/527143 — evolutionary biology — Posted on 2019-05-04

3067 pyKNEEr: An image analysis workflow for open and reproducible research on femoral knee cartilage

Bonaretti, S.; Gold, G. E.; Beaupre, G. S.

10.1101/556423 — bioengineering — Posted on 2019-05-04

3068 Multivariate methods for testing hypotheses of temporal community dynamics

Buckley, H. L.; Day, N. J.; Case, B. S.; Lear, G.; Ellison, A. M.

10.1101/362822 — ecology — Posted on 2019-05-04

3069 A clinal polymorphism in the insulin signaling transcription factor foxo contributes to life-history adaptation in Drosophila

Durmaz, E.; Rajpurohit, S.; Betancourt, N.; Fabian, D. K.; Kapun, M.; Schmidt, P.; Flatt, T.

10.1101/473231 — evolutionary biology — Posted on 2019-05-04

3070 Cytoskeletal tension actively sustains the migratory T cell synaptic contact

Kumari, S.; Mak, M.; Poh, Y.; Tohme, M.; Watson, N.; Melo, M.; Janssen, E.; Dustin, M.; Geha, R.; Irvine, D.

10.1101/437236 — cell biology — Posted on 2019-05-04

3071 Rotavirus Calcium Dysregulation Manifests as Dynamic Calcium Signaling in the Cytoplasm and Endoplasmic Reticulum

Chang-Graham, A. L.; Perry, J. L.; Strtak, A. C.; Ramachandran, N. K.; Criglar, J. M.; Philip, A. A.; Patton, J. T.; Estes, M. K.; Hyser, J. M.

10.1101/627877 — microbiology — Posted on 2019-05-04

3072 Shavenbaby protein isoforms orchestrate the self-renewal versus differentiation of Drosophila intestinal stem cells

Al Hayek, S.; Alsawadi, A. A.; Kambris, Z.; Boquete, J. P.; Bohere, J.; Ronsin, B.; Plaza, S.; Lemaitre, B.; Payre, F.; Osman, D.

10.1101/627554 — developmental biology — Posted on 2019-05-04

3073 RUNX1/RUNX1T1 controls alternative splicing in the t(8;21)-positive acute myeloid leukemia cells

Grinev, V.; Ilyushonak, I.; Clough, R.; Nakjang, S.; Smink, J.; Martinez-Soria, N.; Ramanouskaya, T.; Bonifer, C.; Heidenreich, O.

10.1101/628040 — cancer biology — Posted on 2019-05-04

3074 Monte Carlo Simulation of Diffusion MRI in geometries constructed from two-photon microscopy of cortical gray matter

Gilani, N.; Hildebrand, S.; Schueth, A.; Roebroeck, A.

10.1101/626945 — biophysics — Posted on 2019-05-04

3075 Identification of the pathway of Rhodoquinone biosynthesis in C. elegans

Del Borrello, S.; Lautens, M.; Dolan, K.; Tan, J. H.; Spensley, M.; Caudy, A.; Fraser, A.

10.1101/627737 — biochemistry — Posted on 2019-05-04

3076 Role of aggregate size, multistability and communication in determining cell fate and patterning in M. xanthus

Arias Del Angel, J. A.; Rivera Yoshida, N.; Martinez-Castilla, L. P.; Escalante, A. E.; Benitez, M.

10.1101/627703 — developmental biology — Posted on 2019-05-04

3077 The use of a centrifuge-free RABiT-II system for high-throughput micronucleus analysis

Repin, M.; Pampou, S. Y.; Brenner, D. J.; Garty, G.

10.1101/627596 — cell biology — Posted on 2019-05-04

3078 Fat SIRAH: Coarse-grained phospholipids to explore membrane-protein dynamics.

Barrera, E. E.; Machado, M. R.; Pantano, S.

10.1101/627570 — biophysics — Posted on 2019-05-04

3079 Energy landscapes reveal agonist’s control of GPCR activation via microswitches

Fleetwood, O.; Matricon, P.; Carlsson, J.; Delemotte, L.

10.1101/627026 — biophysics — Posted on 2019-05-04

3080 Photoactivation of silicon rhodamines via a light-induced protonation

Frei, M. S.; Hoess, P.; Lampe, M.; Nijmeijer, B.; Kueblbeck, M.; Ellenberg, J.; Ries, J.; Pitsch, S.; Reymond, L.; Johnsson, K.

10.1101/626853 — biophysics — Posted on 2019-05-04

3081 Quantitative evaluation of a high resolution lipidomics platform

Liu, J.; Liu, X.; Xiao, Z.; Locasale, J. W.

10.1101/627687 — biochemistry — Posted on 2019-05-04

3082 Flow-induced symmetry breaking in growing bacterial biofilms

Pearce, P.; Song, B.; Skinner, D. J.; Mok, R.; Hartmann, R.; Singh, P. K.; Oishi, J. S.; Drescher, K.; Dunkel, J.

10.1101/627208 — biophysics — Posted on 2019-05-04

3083 Dietary methionine restriction targets one carbon metabolism in humans and produces broad therapeutic responses in cancer

Gao, X.; Sanderson, S. M.; Dai, Z.; Reid, M. A.; Cooper, D. E.; Lu, M.; Richie, J. P.; Ciccarella, A.; Calcagnotto, A.; Mikhael, P.; Mentch, S. J.; Liu, J.; Ables, G.; Kirsch, D. G.; Hsu, D.; Nichenametla, S.; Locasale, J. W.

10.1101/627364 — cancer biology — Posted on 2019-05-04

3084 Multi-Scale, Patient-Specific Computational Flow Dynamics Models Predict Formation of Neointimal Hyperplasia in Saphenous Vein Grafts

Donadoni, F.; Pichardo, C.; Homer-Vanniasinkam, S.; Dardik, A.; Diaz, V.

10.1101/624312 — bioengineering — Posted on 2019-05-03

3085 Molecular physiology of chemical defenses in a poison frog

Caty, S. N.; Alvarez-Buylla, A.; Byrd, G. D.; Vidoudez, C.; Roland, A. B.; Tapia, E. E.; Budnik, B.; Trauger, S. A.; Coloma, L. A.; O'Connell, L. A.

10.1101/591115 — physiology — Posted on 2019-05-03

3086 Niche engineering drives early passage through an immune bottleneck in progression to colorectal cancer

Gatenbee, C. D.; Baker, A.-M.; Schenck, R. O.; Neves, M.; Hasan, S. Y.; Martinez, P.; Cross, W. C. H.; Jansen, M.; Rodriguez-Justo, M.; Sottoriva, A.; Leedham, S.; Robertson-Tessi, M.; Graham, T. A.; Anderson, A.

10.1101/623959 — cancer biology — Posted on 2019-05-03

3087 Legacy Data Confounds Genomics Studies

Anderson-Trocme, L.; Farouni, R.; Bourgey, M.; Kamatani, Y.; Higasa, K.; Seo, J.-S.; Kim, C.; Matsuda, F.; Gravel, S.

10.1101/624908 — bioinformatics — Posted on 2019-05-03

3088 Mapping interactions of microbial metabolites and human receptors

Colosimo, D. A.; Kohn, J. A.; Luo, P. M.; Han, S. M.; Pickard, A. J.; Rao, A.; Cross, J. R.; Cohen, L. J.; Brady, S. F.

10.1101/614537 — microbiology — Posted on 2019-05-03

3089 Read-SpaM: assembly-free and alignment-free comparison of bacterial genomes with low sequencing coverage

Lau, A. K.; Leimeister, C.-A.; Doerrer, S.; Gerth, M.; Bleidorn, C.; Morgenstern, B.

10.1101/550632 — bioinformatics — Posted on 2019-05-03

3090 Increased hippocampal excitability and altered learning dynamics mediate cognitive mapping deficits in human aging

Diersch, N.; Valdes-Herrera, J. P.; Tempelmann, C.; Wolbers, T.

10.1101/581108 — neuroscience — Posted on 2019-05-03

3091 Renal Localization of Plasmodium vivax and Zoonotic Monkey Parasite Plasmodium knowlesi Derived Components in Malaria Associated Acute Kidney Injury

Acharya, P.; Pramanik, A.; Kaur, C.; Kumari, K.; Mandage, R.; Dinda, A.; Sankar, J.; Bagga, A.; Agarwal, S.; Sinha, A.; Singh, G.

10.1101/544726 — microbiology — Posted on 2019-05-03

3092 Associations between EEG functional brain connectivity and a cognitive reserve proxy in healthy older adults

Moezzi, B.; Lavrencic, L. M.; Goldsworthy, M. R.; Coussens, S.; Keage, H. A.

10.1101/625608 — bioengineering — Posted on 2019-05-03

3093 A small subset of NLR genes drives local adaptation to pathogens in wild tomato

Stam, R.; Silva-Arias, G. A.; Tellier, A.

10.1101/210559 — evolutionary biology — Posted on 2019-05-03

3094 Electric-induced reversal of morphogenesis in Hydra

Braun, E.; Ori, H.

10.1101/600395 — biophysics — Posted on 2019-05-03

3095 SavvyCNV: genome-wide CNV calling from off-target reads

Laver, T. W.; De Franco, E.; Johnson, M. B.; Patel, K. A.; Ellard, S.; Weedon, M. N.; Flanagan, S. E.; Wakeling, M. N.

10.1101/617605 — bioinformatics — Posted on 2019-05-03

3096 Identifying Brain Region Connectivity using Steiner Minimal Tree Approximation and a Genetic Algorithm

Islam, S.; Sarwar, D. M.

10.1101/626598 — bioinformatics — Posted on 2019-05-03

3097 Sonogenetic modulation of cellular activities using an engineered auditory-sensing protein

Huang, Y.-S.; Fan, C.-H.; Hsu, N.; Wu, C.-Y.; Chang, C.-Y.; Hong, S.-R.; Chang, Y.-C.; Wu, A. Y.-T.; Guo, V.; Chiang, Y.-C.; Hsu, W.-C.; Chiu, N.-H.; Chen, L.; Lai, C. P.-K.; Yeh, C.-K.; LIN, Y. C.

10.1101/625533 — bioengineering — Posted on 2019-05-03

3098 rpoB, a promising marker for analyzing the diversity of bacterial communities by amplicon sequencing

Ogier, J.-C.; Pages, S.; Galan, M.; Barret, M.; Gaudriault, S.

10.1101/626119 — microbiology — Posted on 2019-05-03

3099 Natural and Pathogenic Protein Sequence Variation Affecting Prion-Like Domains Within and Across Human Proteomes

Cascarina, S. M.; Ross, E. D.

10.1101/626648 — genomics — Posted on 2019-05-03

3100 The Australian Genetics of Depression Study: Study Description and Sample Characteristics

Byrne, E. M.; Kirk, K.; Medland, S. E.; McGrath, J. J.; Parker, R.; Cross, S.; Sullivan, L.; Statham, D. J.; Levinson, D. M.; Licinio, J.; Wray, N. R.; Hickie, I. B.; Martin, N. G.

10.1101/626762 — genetics — Posted on 2019-05-03

3101 Partial migration in a subtropical wading bird in the Southeastern U.S.

Picardi, S.; Frederick, P.; Borkhataria, R. R.; Basille, M. R.

10.1101/626473 — ecology — Posted on 2019-05-03

3102 A glucose-dependent spatial patterning of exocytosis inhuman β-cells is disrupted in type 2 diabetes

Fu, J.; Githaka, J. M.; Dai, X.; Plummer, G.; Suzuki, K.; Spigelman, A. F.; Bautista, A.; Kim, R.; Greitzer-Antes, D.; Manning Fox, J. E.; Gaisano, H. Y.; MacDonald, P. E.

10.1101/534669 — cell biology — Posted on 2019-05-03

3103 RNA polymerase mutations cause cephalosporin resistance in clinical Neisseria gonorrhoeae isolates

Palace, S. G.; Wang, Y.; Rubin, D. H. F.; Welsh, M.; Walker, S. G.; Grad, Y.

10.1101/626457 — microbiology — Posted on 2019-05-03

3104 Cryo-EM structures reveal interactions of S-OPA1 with membrane and changes upon nucleotide binding

Zhang, D.; Zhang, Y.; Ma, J.; Niu, T.; Chen, W.; Pang, X.; Zhai, Y.; Sun, F.

10.1101/528042 — biophysics — Posted on 2019-05-03

3105 BayesENproteomics: Bayesian elastic nets for quantification of proteoforms in complex samples

Mallikarjun, V.; Richardson, S. M.; Swift, J.

10.1101/295527 — bioinformatics — Posted on 2019-05-03

3106 Fast and robust animal pose estimation

Graving, J. M.; Chae, D.; Naik, H.; Li, L.; Koger, B.; Costelloe, B. R.; Couzin, I. D.

10.1101/620245 — animal behavior and cognition — Posted on 2019-05-03

3107 Cell-type-specific genomics reveals histone modification dynamics in mammalian meiosis

Lam, K. W. G.; Brick, K.; Cheng, G.; Pratto, F.; Camerini-Otero, R. D.

10.1101/469908 — genomics — Posted on 2019-05-03

3108 Uncovering and characterizing splice variants associated with survival in lung cancer patients

West, S.; Kumar, S.; Batra, S. K.; Ali, H.; Ghersi, D.

10.1101/623876 — bioinformatics — Posted on 2019-05-03

3109 Using Deep Learning to Annotate the Protein Universe

Bileschi, M. L.; Belanger, D.; Bryant, D. H.; Sanderson, T.; Carter, B.; Sculley, D.; DePristo, M. L.; Colwell, L. J.

10.1101/626507 — bioinformatics — Posted on 2019-05-03

3110 All-Assay-Max2 pQSAR: Activity predictions as accurate as 4-concentration IC50s for 8,558 Novartis assays

Martin, E. J.; Polyakov, V. R.; Zhu, X.-W.; Mukherjee, P.; Tian, L.; Liu, X.

10.1101/620864 — bioinformatics — Posted on 2019-05-03

3111 Mammalian gene expression variability is explained by underlying cell state

Foreman, R.; Wollman, R.

10.1101/626424 — systems biology — Posted on 2019-05-03

3112 A Novel Chromatin-Opening Element for Stable Long-term Transgene Expression

Rudina, S. S.; Smolke, C. D.

10.1101/626713 — synthetic biology — Posted on 2019-05-03

3113 A minimal model for microbial biodiversity can reproduce experimentally observed ecological patterns

Marsland, R.; Cui, W.; Mehta, P.

10.1101/622829 — microbiology — Posted on 2019-05-03

3114 From single nuclei to whole genome assembly

Montoliu-Nerin, M.; Sanchez-Garcia, M.; Bergin, C.; Grabherr, M.; Ellis, B.; Kutschera, V. E.; Kierczak, M.; Johannesson, H.; Rosling, A.

10.1101/625814 — genomics — Posted on 2019-05-03

3115 The Prrx1 limb enhancer marks an adult population of injury-responsive, multipotent dermal fibroblasts

Currie, J. D.; Grosser, L.; Murawala, P.; Schuez, M.; Michel, M.; Tanaka, E. M.; Sandoval-Guzman, T.

10.1101/524124 — developmental biology — Posted on 2019-05-03

3116 Microtubules promote intercellular contractile force transmission during tissue folding

Ko, C. S.; Tserunyan, V.; Martin, A. C.

10.1101/540344 — developmental biology — Posted on 2019-05-03

3117 A post-transcriptional program of chemoresistance by AU-rich elements and TTP

Lee, S.; Micalizzi, D.; Truesdell, S. S.; Bukhari, S. I.; Boukhali, M.; Lombardi-Story, J.; Kato, Y.; Dey-Guha, I.; Nicholson, B. T.; Choo, M.-K.; Myers, D. T.; Lee, D.; Mazzola, M. A.; Raheja, R.; Langenbucher, A.; Haradhvala, N. J.; Lawrence, M.; Gandhi, R.; Tiedje, C.; Diaz-Munoz, M.; Sweetser, D. A.; Sykes, D.; Haas, W.; Haber, D. A.; Maheswaran, S.; Vasudevan, S.

10.1101/418715 — cancer biology — Posted on 2019-05-03

3118 OSCA: a tool for omic-data-based complex trait analysis

Zhang, F.; Chen, W.; Zhu, Z.; Zhang, Q.; Deary, I. J.; Nabais, M. F.; Qi, T.; Wray, N. R.; Visscher, P. M.; McRae, A. F.; Yang, J.

10.1101/445163 — bioinformatics — Posted on 2019-05-03

3119 Is useful research data usually shared? An investigation of genome-wide association study summary statistics

Thelwall, M.; Munafo, M.; Mas-Bleda, A.; Stuart, E.; Makita, M.; Weigert, V.; Keene, C.; Khan, N.; Drax, K.; Kousha, K.

10.1101/622795 — scientific communication and education — Posted on 2019-05-03

3120 State-Switching Probability Reveals Sleep-Related Biological Drives in Drosophila

Wiggin, T. D.; Goodwin, P. R.; Donelson, N. C.; Liu, C.; Trinh, K.; Sanyal, S.; Griffith, L. C.

10.1101/263301 — neuroscience — Posted on 2019-05-03

3121 Modeling Bottom-Up and Top-Down Attention with a Neurodynamic Model of V1

Berga, D.; Otazu, X.

10.1101/590174 — neuroscience — Posted on 2019-05-03

3122 DNA energy constraints shape biological evolutionary trajectories

Fariselli, P.; Taccioli, C.; Pagani, L.; Maritan, A.

10.1101/625681 — molecular biology — Posted on 2019-05-03

3123 A conserved ATG2-GABARAP interaction is critical for phagophore closure

Bozic, M.; van den Bekerom, L.; Milne, B. A.; Goodman, N.; Roberston, L.; Prescott, A. R.; Macartney, T. J.; Dawe, N.; McEwan, D. G.

10.1101/624627 — cell biology — Posted on 2019-05-03

3124 KymoButler: A deep learning software for automated kymograph analysis

Jakobs, M.; Dimitracopoulos, A.; Franze, K.

10.1101/405183 — cell biology — Posted on 2019-05-03

3125 Cloud Bursting Galaxy: Federated Identity and Access Management

Jalili, V.; Afgan, E.; Taylor, J.; Goecks, J.

10.1101/506238 — bioinformatics — Posted on 2019-05-03

3126 Click-PD: A Quantitative Method for Base-Modified Aptamer Discovery

Gordon, C. K. L.; Wu, D. T.; Feagin, T. A.; Pusuluri, A.; Csordas, A. T.; Eisenstein, M.; Hawker, C. J.; Niu, J.; Soh, H. T.

10.1101/626572 — bioengineering — Posted on 2019-05-03

3127 Timing of arrival in the breeding area is repeatable and affects reproductive success in a non-migratory population of blue tits

Gilsenan, C.; Valcu, M.; Kempenaers, B.

10.1101/626788 — animal behavior and cognition — Posted on 2019-05-03

3128 Effects of siRNA silencing on the susceptibility of the fish cell line CHSE-214 to Yersinia ruckeri

Menanteau-Ledouble, S.; Schachner, O.; Lawrence, M. L.; El-Matbouli, M.

10.1101/626812 — microbiology — Posted on 2019-05-03

3129 Pseudomonas syringae Increases Water Availability in Leaf Microenvironments via Production of Hygroscopic Syringafactin

Hernandez, M. N.; Lindow, S. E.

10.1101/626630 — microbiology — Posted on 2019-05-03

3130 Genetic Risk Factors for Colorectal Cancer in Multiethnic Indonesians

Yusuf, I.; Miskad, U. A.; Lusikooy, R. E.; Arsyad, A.; Irwan, A.; Mathew, G.; Suriapranata, I.; Kusuma, R.; Pardamean, B.; Kacamarga, M. F.; Budiarto, A.; Cenggoro, T. W.; Pardamean, C. I.; McMahan, C.; Joyner, C.; Baurley, J. W.

10.1101/626739 — genomics — Posted on 2019-05-03

3131 Towards best practice in cancer mutation detection with whole-genome and whole-exome sequencing

Somatic Mutation Working Group of SEQC2 Consortium, ; Xiao, W.

10.1101/626440 — genomics — Posted on 2019-05-03

3132 Combining serological and contact data to derive target immunity levels for achieving and maintaining measles elimination

Funk, S.; Knapp, J. K.; Lebo, E.; Reef, S. E.; Dabbagh, A. J.; Kretsinger, K.; Jit, M.; Edmunds, W. J.; Strebel, P. M.

10.1101/201574 — epidemiology — Posted on 2019-05-03

3133 Non-production vegetation has a positive effect on ecological processes in agroecosystems

Case, B. S.; Pannell, J. L.; Stanley, M. C.; Norton, D. A.; Brugman, A.; Funaki, M.; Mathieu, C.; Songling, C.; Suryaningrum, F.; Buckley, H. L.

10.1101/624635 — ecology — Posted on 2019-05-03

3134 Transcriptional induction and mechanical propagation of a morphogenetic wave

Bailles, A.; Collinet, C.; Philippe, J.-M.; Lenne, P.-F.; Munro, E.; Lecuit, T.

10.1101/430512 — developmental biology — Posted on 2019-05-03

3135 Niche engineering drives early passage through an immune bottleneck in progression to colorectal cancer

10.1101/623959 — cancer biology — Posted on 2019-05-03

3136 All of gene expression (AOE): integrated index for public gene expression databases

Bono, H.

10.1101/626754 — bioinformatics — Posted on 2019-05-03

3137 Multi-Scale, Patient-Specific Computational Flow Dynamics Models Predict Formation of Neointimal Hyperplasia in Saphenous Vein Grafts

Donadoni, F.; Diaz, V.; Pichardo-Almarza, C.; Homer-Vanniasinkam, S.; Dardik, A.

10.1101/624312 — bioengineering — Posted on 2019-05-03

3138 Competing Fluid Forces Control Endothelial Sprouting in a 3-D Microfluidic Vessel Bifurcation Model

Akbari, E.; Spychalski, G. B.; Rangharajan, K. K.; Prakash, S.; Song, J. W.

10.1101/626531 — bioengineering — Posted on 2019-05-03

3139 Juvenile hormone interacts with multiple factors to modulate aggression and dominance in a social bumblebee

Pandey, A.; Motro, U.; Bloch, G.

10.1101/626382 — animal behavior and cognition — Posted on 2019-05-03

3140 LFPy - multimodal modeling of extracellular neuronal recordings in Python

Hagen, E.; Naess, S.; Ness, T. V.; Einevoll, G. T.

10.1101/620286 — neuroscience — Posted on 2019-05-03

3141 Optimizing systemic insecticide use to improve malaria control

Meredith, H. R.; Furuya-Kanamori, L.; Yakob, L.

10.1101/621391 — epidemiology — Posted on 2019-05-03

3142 Levels of Representation in a Deep Learning Model of Categorization

Guest, O.; Love, B. C.

10.1101/626374 — neuroscience — Posted on 2019-05-03

3143 Relapse prevention through health technology program reduces hospitalization in schizophrenia

10.1101/626663 — neuroscience — Posted on 2019-05-03

3144 Parallel Streams to Interconnected Networks: Organization and Reorganization of Cortical Processing During Visual Perception and Action

Ray, D.; Hajare, N.; Roy, D.; Banerjee, A.

10.1101/609487 — neuroscience — Posted on 2019-05-03

3145 A clinal polymorphism in the insulin signaling transcription factor foxo contributes to life-history adaptation in Drosophila

Durmaz, E.; Rajpurohit, S.; Betancourt, N.; Fabian, D. K.; Kapun, M.; Schmidt, P.; Flatt, T.

10.1101/473231 — evolutionary biology — Posted on 2019-05-03

3146 Corticothalamic gating of population auditory thalamocortical transmission in mouse

Ibrahim, B. A.; Murphy, C. A.; Muscioni, G.; Taheri, A.; Yudintsev, G.; Kenyon, R. V.; Berger-Wolf, T. Y.; Banks, M. I.; Llano, D. A.

10.1101/625988 — neuroscience — Posted on 2019-05-03

3147 Myeloperoxidase loss protects against delayed cerebral injury after subarachnoid hemorrhage

Coulibaly, A. P.; Pezuk, P.; Gartman, W.; Triebwasser, D.; Provencio, J. J.

10.1101/627638 — neuroscience — Posted on 2019-05-03

3148 Patterned cell death sculpts functional and adaptive neural networks in flies

Pop, S.; Chen, C.-L.; Sproston, C. J.; Kondo, S.; Ramdya, P.; Williams, D. W.

10.1101/626465 — neuroscience — Posted on 2019-05-03

3149 Spatial patterning of tissue volume deformation in schizophrenia reflects brain network architecture

Shafiei, G.; Markello, R. D.; Talpalaru, A.; Makowski, C.; Kirschner, M.; Devenyi, G. A.; Hagmann, P.; Cashman, N. R.; Lepage, M.; Chakravarty, M. M.; Dagher, A.; Misic, B.

10.1101/626168 — neuroscience — Posted on 2019-05-03

3150 General Practitioners’ adherence to prescribing guidelines for statins in the United Kingdoms

Ricciardi, F.; Nazareth, I.; Petersen, I.

10.1101/625236 — epidemiology — Posted on 2019-05-03

3151 Structural integrity following focused ultrasound thalamotomy and its correlation with tremor relief

Zur, G.; Lesman-Segev, O.; Schlesinger, I.; Goldsher, D.; Sinai, A.; Zaaroor, M.; Assaf, Y.; Eran, A.; Kahn, I.

10.1101/620369 — neuroscience — Posted on 2019-05-03

3152 Timing is (almost) everything in a comprehensive, spike-resolved flight motor program

Putney, J.; Conn, R.; Sponberg, S.

10.1101/602961 — neuroscience — Posted on 2019-05-03

3153 Characterization of bulk phosphatidylcholine compositions in human plasma using side-chain resolving lipidomics

Quell, J. D.; Römisch-Margl, W.; Haid, M.; Krumsiek, J.; Skurk, T.; Halama, A.; Stephan, N.; Adamski, J.; Hauner, H.; Mook-Kanamori, D.; Mohney, R. P.; Daniel, H.; Suhre, K.; Kastenmüller, G.

10.1101/626986 — epidemiology — Posted on 2019-05-03

3154 Multiple non-auditory cortical regions innervate the auditory midbrain

Olthof, B. M.; Rees, A.; Gartside, S. E.

10.1101/627232 — neuroscience — Posted on 2019-05-03

3155 Human immune cells infiltrate the lesioned spinal cord and impair recovery after spinal cord injury in humanized mice

Carpenter, R. S.; Jiang, R. R.; Brennan, F. H.; Hall, J. C. E.; Gottipati, M. K.; Niewiesk, S. H.; Popovich, P. G.

10.1101/626721 — neuroscience — Posted on 2019-05-03

3156 In vivo microstructural heterogeneity of white matter lesions in Alzheimer’s disease using tissue compositional analysis of diffusion MRI data

Mito, R.; Dhollander, T.; Xia, Y.; Raffelt, D.; Salvado, O.; Churilov, L.; Rowe, C. C.; Brodtmann, A.; Villemagne, V. L.; Connelly, A.

10.1101/623124 — neuroscience — Posted on 2019-05-03

3157 The rich get richer: synaptic remodeling between climbing fibers and Purkinje cells in the developing cerebellum begins with positive feedback addition of synapses.

Wilson, A. M.; Schalek, R.; Suissa-Peleg, A.; Jones, T. R.; Knowles-Barley, S.; Pfister, H.; Lichtman, J. W.

10.1101/627299 — neuroscience — Posted on 2019-05-03

3158 Defined cell types in superior colliculus make distinct contributions to prey capture behavior in the mouse

Hoy, J. L.; Niell, C. M.; Bishop, H. I.

10.1101/626622 — neuroscience — Posted on 2019-05-03

3159 When sinks become sources: adaptive colonization in asexuals

Lavigne, F.; Martin, G.; Anciaux, Y.; Papaix, J.; Roques, L.

10.1101/433235 — evolutionary biology — Posted on 2019-05-03

3160 Individual vulnerability to stress is associated with increased demand for intravenous heroin self-administration in rats

Stafford, N. P.; Kazan, T. N.; Donovan, C. M.; Hart, E. E.; Drugan, R. C.; Charntikov, S.

10.1101/627471 — neuroscience — Posted on 2019-05-03

3161 Parsing out the variability of transmission at central synapses using optical quantal analysis

Soares, C.; Trotter, D.; Longtin, A.; Beïque, J.-C.; Naud, R.

10.1101/624692 — neuroscience — Posted on 2019-05-03

3162 Reassessing the Evidence for Universal School-age Bacillus Calmette Guerin (BCG) Vaccination in England and Wales

Abbott, S.; Christensen, H.; Brooks-Pollock, E.

10.1101/624916 — epidemiology — Posted on 2019-05-03

3163 CENP-F controls force generation and the dynein-dependent stripping of CENP-E at kinetochores

Auckland, P.; McAinsh, A.

10.1101/627380 — cell biology — Posted on 2019-05-03

3164 Checkpoint signaling and error correction require regulation of the MPS1 T-loop by PP2A-B56

Gruneberg, U.; Hayward, D.; Bancroft, J.; Mangat, D.; Alfonso-Perez, T.; Dugdale, S.; McCarthy, J.; Barr, F. A.

10.1101/626937 — cell biology — Posted on 2019-05-03

3165 3D super-resolution microscopy performance and quantitative analysis assessment using DNA-PAINT and DNA origami test samples

Lin, R.; Lutz, T.; Clowsley, A. H.; Baddeley, D.; Soeller, C.

10.1101/626887 — biophysics — Posted on 2019-05-03

3166 Slow Microtubule Binding Kinetics of Membrane-bound Kinesin Predicts High Motor Copy Numbers on Intracellular Cargo

Jiang, R.; Vandal, S. R.; Park, S.; Majd, S.; Tüzel, E.; Hancock, W. O.

10.1101/627174 — biophysics — Posted on 2019-05-03

3167 Defining Hospital Catchment Areas Using Multiscale Community Detection: A Case Study for Planned Orthopaedic Care in England

Clarke, J. M.; Barahona, M.; Darzi, A.

10.1101/619692 — epidemiology — Posted on 2019-05-03

3168 The effect of number of healthcare visits on study sample selection and prevalence estimates in electronic health record data

Rasmussen-Torvik, L.; Furmanchuk, A.; Stoddard, A.; Osinski, K.; Meuer, J.; Smith, N.; Chrischilles, E.; Black, B.; Kho, A.

10.1101/622761 — epidemiology — Posted on 2019-05-03

3169 C. elegans Runx/CBFβ suppresses POP-1(TCF) to convert asymmetric to proliferative division of stem cell-like seam cells

van der Horst, S.; Cravo, J.; Woollard, A.; Teapal, J.; van den Heuvel, S.

10.1101/625335 — developmental biology — Posted on 2019-05-03

3170 Throughput and Resolution with a Next Generation Direct Electron Detector

Mendez, J. H.; Mehrani, A.; Randolph, P. S.; Stagg, S. M.

10.1101/620617 — biophysics — Posted on 2019-05-03

3171 Two separation-of-function isoforms of human TPP1 and a novel intragenic noncoding RNA dictate telomerase regulation in somatic and germ cells.

Grill, S.; Bisht, K. K.; Tesmer, V. M.; Sifuentes, C. J.; Nandakumar, J.

10.1101/626523 — biochemistry — Posted on 2019-05-03

3172 A heme-binding protein produced by Haemophilus haemolyticus inhibits non-typeable Haemophilus influenzae

Latham, R. D.; Torrado, M.; Atto, B.; Walshe, J. L.; Wilson, R.; Guss, J. M.; Mackay, J. P.; Tristram, S.; Gell, D. A.

10.1101/626416 — biochemistry — Posted on 2019-05-03

3173 Genome-wide association study of plasma lipids

Demirkan, A.; Pool, R.; Deelen, J.; Beekman, M.; Liu, J.; Harms, A. C.; Varhoost, A.; Verhoeven, A.; Amin, N.; Willems van Dijk, K.; Hankemeier, T.; Boomsma, D. I.; Slagboom, E.; van Duijn, C. M.

10.1101/621334 — epidemiology — Posted on 2019-05-03

3174 FOP plays a negative role in ciliogenesis and promotes cell cycle re-entry by facilitating primary cilia disassembly

Jiang, H.; Cheung, M. H.; Amin, A.; Liang, C.

10.1101/627349 — cell biology — Posted on 2019-05-03

3175 Self-Organization of Spindle-Like Microtubule Structures

Edozie, B.; Sahu, S.; Pitta, M.; Englert, A.; Fermino do Rosario, C.; L. Ross, J.

10.1101/624874 — biophysics — Posted on 2019-05-03

3176 A hydrophobic network: Intersubunit and intercapsomer interactions stabilizing the bacteriophage P22 capsid

Asija, K.; Teschke, C.

10.1101/626804 — biochemistry — Posted on 2019-05-03

3177 Microbial community shifts associated with the ongoing stony coral tissue loss disease outbreak on the Florida Reef Tract

Meyer, J. L.; Castellanos-Gell, J.; Aeby, G. S.; Häse, C.; Ushijima, B.; Paul, V. J.

10.1101/626408 — microbiology — Posted on 2019-05-03

3178 Genomic and physiological analyses reveal that extremely thermophilic Caldicellulosiruptor changbaiensis deploys unique cellulose attachment mechanisms

Khan, A. M. A. M.; Mendoza, C.; Hauk, V. J.; Blumer-Schuette, S.

10.1101/622977 — microbiology — Posted on 2019-05-03

3179 Single-cell RNAseq uncovers involution mimicry as an aberrant development pathway during breast cancer metastasis

Valdes-Mora, F.; Salomon, R.; Gloss, B. S.; Law, A. M.; Murphy, K.; Roden, D. L.; Castillo, L.; Colino-Sanguino, Y.; Kikhtyak, Z.; Farbehi, N.; Conway, J. R.; Oakes, S. R.; Cox, T.; Timpson, P.; Ormandy, C. J.; Gallego-Ortega, D.

10.1101/624890 — cancer biology — Posted on 2019-05-03

3180 Triphenyl phosphate is a selective PPARγ modulator that does not induce brite adipogenesis in vitro and in vivo

Kim, S.; Rabhi, N.; Blum, B. C.; Hekman, R.; Wynne, K.; Emili, A.; Farmer, S.; Schlezinger, J. J.

10.1101/626390 — pharmacology and toxicology — Posted on 2019-05-03

3181 The CXCL12/CXCR4 signalling axis retains neutrophils at inflammatory sites in zebrafish

Isles, H. M.; Herman, K. D.; Robertson, A. L.; Loynes, C. A.; Prince, L. R.; Elks, P. M.; Renshaw, S. A.

10.1101/626978 — immunology — Posted on 2019-05-03

3182 NSUN2 introduces 5-methylcytosines in mammalian mitochondrial tRNAs

Van Haute, L.; Lee, S.-Y.; McCann, B. J.; Powell, C. A.; Bansal, D.; Garone, C.; Shin, S.; Kim, J.-S.; Frye, M.; Gleeson, J. G.; Miska, E. A.; Rhee, H.-W.; Minczuk, M.

10.1101/626960 — biochemistry — Posted on 2019-05-03

3183 Mitochondrial glycerol phosphate oxidation is modulated by adenylates through allosteric regulation of cytochrome c oxidase activity in mosquito flight muscle.

Gaviraghi, A.; Correa Soares, J. B.; Mignaco, J.; Fontes, C. F. L.; Oliveira, M.

10.1101/624452 — biochemistry — Posted on 2019-05-03

3184 iCn3D, a Web-based 3D Viewer for Sharing 1D/2D/3D Representations of Biomolecular Structures

Wang, J.; Youkharibache, P.; Zhang, D.; Lanczycki, C. J.; Geer, R. C.; Madej, T.; Phan, L.; Ward, M.; Lu, S.; Marchler, G. H.; Wang, Y.; Bryant, S. H.; Geer, L. Y.; Marchler-Bauer, A.

10.1101/501692 — bioinformatics — Posted on 2019-05-03

3185 Repurposing the aldose reductase inhibitor and diabetic neuropathy drug epalrestat for the congenital disorder of glycosylation PMM2-CDG

Iyer, S.; Murthy, K.; Parton, Z.; Tsang, H.; Sam, F. S.; DiPrimio, N.; Lao, J.; Perlstein, E. O.

10.1101/626697 — pharmacology and toxicology — Posted on 2019-05-03

3186 High Frequency of Enteroparasitoses in the Municipality of Oiapoque, Amapa State, Brazil, on the Border With French Guiana

Menezes, R. A. d. O.; Gomes, M. d. S. M.; Mendes, A. M.; Nascimento, S. R. d.; Couto, A. A. R. D. A.; Nacher, M.; Enk, M. J.; Machado, R. L. D.

10.1101/627109 — epidemiology — Posted on 2019-05-03

3187 Dissemination and Stakeholder Engagement Practices Among Dissemination & Implementation Scientists: Results from an Online Survey

Knoepke, C.; Ingle, M. P.; Matlock, D. D.; Brownson, R. C.; Glasgow, R. E.

10.1101/627042 — scientific communication and education — Posted on 2019-05-03

3188 Comparative analysis of the Accelerated Aged seed transcriptome profiles of maize CSSLs (I178 and X178)

Li, L.; Wang, F.; Li, X.; Peng, Y.; Zhang, H.; Hey, S.; Wang, G.; Wang, J.; Li, L.

10.1101/627117 — plant biology — Posted on 2019-05-03

3189 Surprise response as a probe for compressed memory states

Levi-Aharoni, H.; Shriki, O.; Tishby, N.

10.1101/627133 — neuroscience — Posted on 2019-05-03

3190 Extensive genetic diversity of bat-borne polyomaviruses reveals inter-family host-switching events

Tan, Z.; Gonzalez, G.; Sheng, J.; Wu, J.; Zhang, F.; Xu, L.; Zhang, P.; Zhu, A.; Qu, Y.; Tu, C.; Carr, M. J.; He, B.

10.1101/627158 — microbiology — Posted on 2019-05-03

3191 Vascular endothelial growth factor (VEGF) expression and neuroinflammation is increased in the frontopolar cortex of individuals with autism spectrum disorder

Gnanasekaran, A.; Kelchen, M. N.; Brogden, N. K.; Smith, R. M.

10.1101/627083 — genomics — Posted on 2019-05-03

3192 Human Trypanosoma cruzi infection risk is driven by eco-social interactions in rural communities of the Argentine Chaco

Fernandez, M. d. P.; Gaspe, M. S.; Sartor, P.; Gürtler, R. E.

10.1101/627141 — epidemiology — Posted on 2019-05-03

3193 Soil and vegetation conditions changes following the different sand dune restoration measures on the Zoige Plateau

Luo, J.; Deng, D.; Zhang, L.; Zhu, X.; Chen, D.; Zhou, J.

10.1101/627091 — ecology — Posted on 2019-05-03

3194 Nanoaperture fabrication via colloidal lithography for single molecule fluorescence imaging

Jamiolkowski, R. M.; Chen, K. Y.; Fiorenza, S. A.; Tate, A. M.; Pfeil, S. H.; Goldman, Y. E.

10.1101/596460 — biophysics — Posted on 2019-05-03

3195 Verify Hub Genes of expression profile in aortic dissection

Wang, W.; Liu, Q.; Wang, Y.; Piao, H.; Li, B.; Zhu, Z.; Li, D.; Wang, T.; Xu, R.; Liu, K.

10.1101/627125 — bioinformatics — Posted on 2019-05-03

3196 Smartphone screening for neonatal jaundice via ambient-subtracted sclera chromaticity: neoSCB app pilot study

Outlaw, F.; Nixon, M.; Odeyemi, O.; MacDonald, L. W.; Meek, J.; Leung, T. S.

10.1101/627034 — bioengineering — Posted on 2019-05-03

3197 MHC genotyping from rhesus macaque exome sequences

Caskey, J. R.; Wiseman, R. W.; Karl, J. A.; Baker, D. A.; Lee, T.; Raveendran, M.; Harris, R. A.; Hu, J.; Muzny, D. M.; Rogers, J.; O'Connor, D. H.

10.1101/625244 — immunology — Posted on 2019-05-02

3198 Uncovering tissue-specific binding features from differential deep learning

Phuycharoen, M.; Zarrineh, P.; Bridoux, L.; Amin, S.; Losa, M.; Chen, K.; Bobola, N.; Rattray, M.

10.1101/606269 — bioinformatics — Posted on 2019-05-02

3199 Machine Learning Classification of Attention-Deficit/Hyperactivity Disorder Using Structural MRI Data

Zhang-James, Y.; Helminen, E.; Liu, J.; The ENIGMA-ADHD Working Group, ; Franke, B.; Hoogman, M.; Faraone, S. V.

10.1101/546671 — bioinformatics — Posted on 2019-05-02

3200 Extinction-resistant attention to long-term conditioned threat is indexed by selective visuocortical alpha suppression in humans

Panitz, C.; Keil, A.; Mueller, E. M.

10.1101/533141 — neuroscience — Posted on 2019-05-02

3201 SCMarker: ab initio marker selection for single cell transcriptome profiling

Wang, F.; Seth, T.; Liang, S.; Navin, N.; Chen, K.

10.1101/356634 — bioinformatics — Posted on 2019-05-02

3202 Candida albicans white and opaque cells exhibit distinct spectra of organ colonization in standard mouse models of infection

Takagi, J.; Singh-Babak, S. D.; Lohse, M. B.; Dalal, C. K.; Johnson, A. D.

10.1101/461293 — microbiology — Posted on 2019-05-02

3203 Phylogenetic systematics and evolution of the spider infraorder Mygalomorphae using genomic scale data

Opatova, V.; Hamilton, C. A.; Hedin, M.; Montes de Oca, L.; Kral, J.; Bond, J. E.

10.1101/531756 — evolutionary biology — Posted on 2019-05-02

3204 Incursion of killer sponge Terpios hoshinota on the coral reefs of Lakshadweep archipelago

Das, R. R.; CR, S.; Mohan, G.; KR, A.; Samuel, D.; Ramachandran, P.; Ramachandran, R.

10.1101/617662 — ecology — Posted on 2019-05-02

3205 Biomarkers for aging identified in cross-sectional studies tend to be non-causative

Nelson, P. G.; Promislow, D.; Masel, J.

10.1101/624270 — bioinformatics — Posted on 2019-05-02

3206 Methods for Analyzing Imaging Mass Cytometry Data with Tellurium Probes

Bassan, J.; Nitz, M.

10.1101/567685 — bioinformatics — Posted on 2019-05-02

3207 Feature-Specific Neural Reactivation during Episodic Memory

Bone, M. B.; Ahmad, F.; Buchsbaum, B. R.

10.1101/622837 — neuroscience — Posted on 2019-05-02

3208 Solution of the FISH-Hi-C paradox for Human Interphase Chromosomes

Shi, G.; Thirumalai, D.

10.1101/615120 — biophysics — Posted on 2019-05-02

3209 A web-based platform of nucleotide sequence alignments of plants

Santos, C.; Carneiro, J.; Pereira, F.

10.1101/617035 — bioinformatics — Posted on 2019-05-02

3210 Rapid, Low-Cost Detection of Water Contaminants Using Regulated In Vitro Transcription

Alam, K. K.; Jung, J. K.; Verosloff, M. S.; Clauer, P. R.; Lee, J. W.; Capdevila, D. A.; Pasten, P. A.; Giedroc, D. P.; Collins, J. J.; Lucks, J. B.

10.1101/619296 — synthetic biology — Posted on 2019-05-02

3211 The cryptic impacts of invasion: Functional homogenization of tropical ant communities by invasive fire ants

Wong, M. K.; Guenard, B.; Lewis, O. T.

10.1101/611749 — ecology — Posted on 2019-05-02

3212 Establishing reference samples for detection of somatic mutations and germline variants with NGS technologies

Fang, L. T.; Zhu, B.; Zhao, Y.; Chen, W.; Yang, Z.; Kerrigan, L.; Langenbach, K.; de Mars, M.; Lu, C.; Idler, K.; Jacob, H.; Yu, Y.; Ren, L.; Zheng, Y.; Jaeger, E.; Schroth, G.; Abaan, O.; Lack, J.; Shen, T.-W.; Talsania, K.; Chen, Z.; Stanbouly, S.; Shetty, J.; Kumar, P.; Bettridge, J.; Tran, B.; Meerzaman, D.; Nguyen, C.; Petitjean, V.; Sultan, M.; Cam, M.; Hung, T.; Peters, E.; Kalamegham, R.; Sahraeian, S. M. E.; Mohiyuddin, M.; Guo, Y.; Yao, L.; Song, L.; Lam, H. H.; Drabek, J.; Maestro, R.; Gasparotto, D.; Koks, S.; Reimann, E.; Scherer, A.; Nordlund, J.; Liljedahl, U.; Jensen, R.; Piroo

10.1101/625624 — bioinformatics — Posted on 2019-05-02

3213 Fungi form interkingdom microbial communities in the primordial human gut that develop with gestational age

Willis, K. A.; Purvis, J. H.; Myers, E. D.; Aziz, M. M.; Karabayir, I.; Klazer Gomes, C. K.; Peters, B. M.; Akbilgic, O.; Talati, A. J.; Pierre, J. F.

10.1101/621235 — microbiology — Posted on 2019-05-02

3214 NF-Y Controls Fidelity of Transcription Initiation at Gene Promoters Through Maintenance of the Nucleosome-Depleted Region

Oldfield, A. J.; Henriques, T.; Kumar, D.; Burkholder, A. B.; Cinghu, S.; Paulet, D.; Bennett, B.; Yang, P.; Scruggs, B. S.; Lavender, C. A.; Rivals, E.; Adelman, K.; Jothi, R.

10.1101/369389 — genomics — Posted on 2019-05-02

3215 Neogenin-1 distinguishes between myeloid-biased and balanced Hoxb5+ long-term hematopoietic stem cells

Gulati, G. S.; Zukowska, M.; Noh, J.; Zhang, A.; Sinha, R.; George, B.; Wesche, D.; Weissman, I. L.; Szade, K.

10.1101/608398 — cell biology — Posted on 2019-05-02

3216 Modeling the Language of Life - Deep Learning Protein Sequences

Heinzinger, M.; Elnaggar, A.; Wang, Y.; Dallago, C.; Nechaev, D.; Matthes, F.; Rost, B.

10.1101/614313 — bioinformatics — Posted on 2019-05-02

3217 Waterborne, abiotic and other indirectly transmitted (W.A.I.T.) infections are defined by the dynamics of free-living pathogens and environmental reservoirs

Miller-Dickson, M.; Meszaros, V. A.; Baffour-Awuah Junior, F.; Almagro-Moreno, S.; Ogbunugafor, C. B.

10.1101/525089 — systems biology — Posted on 2019-05-02

3218 Connectal Coding: Discovering the Structures Linking Cognitive Phenotypes to Individual Histories

Vogelstein, J. T.; Bridgeford, E. W.; Pedigo, B. D.; Chung, J.; Levin, K.; Mensh, B.; Priebe, C. E.

10.1101/610501 — neuroscience — Posted on 2019-05-02

3219 Type I interferon-dependent CCL4 is induced by a cGAS/STING pathway that bypasses viral inhibition and protects infected tissue, independent of viral burden

Parekh, N. J.; Krouse, T. E.; Reider, I. E.; Hobbs, R. P.; Ward, B. M.; Norbury, C. C.

10.1101/616888 — immunology — Posted on 2019-05-02

3220 Development of a Comprehensive Antibody Staining Database using a Standardized Analytics Pipeline

Amir, E.-a. D.; Lee, B.; Badoual, P.; Gordon, M.; Guo, X. V.; Merad, M.; Rahman, A. H.

10.1101/563742 — immunology — Posted on 2019-05-02

3221 Hi-C detects novel structural variants in HL-60 and HL-60/S4 cell lines

Jacobson, E. C.; Grand, R. S.; Perry, J. K.; Vickers, M. H.; Olins, A. L.; Olins, D. L.; O'Sullivan, J. M.

10.1101/482208 — genomics — Posted on 2019-05-02

3222 Decoding G0 somatic mutants through deep phenotyping and mosaic pattern analysis in the zebrafish skeleton

Watson, C. J.; Monstad-Rios, A. T.; Bhimani, R. M.; Gistelinck, C.; Willaert, A.; Coucke, P. J.; Hsu, Y.-H.; Kwon, R. Y.

10.1101/466185 — genetics — Posted on 2019-05-02

3223 Precise removal of Calm1 long 3′ UTR isoform by CRISPR-Cas9 genome editing impairs dorsal root ganglion development in mice

Gruner, H. N.; Bae, B.; Lynch, M.; Oliver, D.; So, K.; Mastick, G. S.; Yan, W.; Miura, P.

10.1101/553990 — genetics — Posted on 2019-05-02

3224 The planktonic protist interactome: where do we stand after a century of research?

Bjorbaekmo, M. F. M.; Evenstad, A.; Rosaeg, L. L.; Krabberod, A. K.; Logares, R.

10.1101/587352 — ecology — Posted on 2019-05-02

3225 Actin assembly and non-muscle myosin activity drive dendrite retraction in an UNC-6/Netrin dependent self-avoidance response.

Sundararajan, L.; Smith, C.; Watson, J.; Millis, B.; Tyska, M.; Miller, D.

10.1101/492769 — developmental biology — Posted on 2019-05-02

3226 Complexity and ultrastructure of infectious extracellular vesicles from cells infected by nonenveloped virus

Yang, J. E.; Rossignol, E. D.; Chang, D.; Zaia, J.; Forrester, I.; Saulsbery, H.; Nicastro, D.; Jackson, W. T.; Bullitt, E.

10.1101/618306 — cell biology — Posted on 2019-05-02

3227 PIP2 Influences the Conformational Dynamics of Membrane bound KRAS4b

McLean, M. A.; Stephen, A. G.; Sligar, S. G.

10.1101/608265 — cancer biology — Posted on 2019-05-02

3228 Machine Source Localization of Tursiops Truncatus Whistle-like Sounds in a Reverberant Aquatic Environment

Woodward, S. F.; Reiss, D.; Magnasco, M.

10.1101/606673 — biophysics — Posted on 2019-05-02

3229 pcaExplorer: an R/Bioconductor package for interacting with RNA-seq principal components

Marini, F.; Binder, H.

10.1101/493551 — bioinformatics — Posted on 2019-05-02

3230 Knock-in rat lines with Cre recombinase at the dopamine D1 and adenosine 2a receptor loci.

Pettibone, J. R.; Yu, J. Y.; Derman, R. C.; Faust, T.; Hughes, E. D.; Filipiak, W. E.; Saunders, T. L.; Ferrario, C. R.; Berke, J. D.

10.1101/455337 — neuroscience — Posted on 2019-05-02

3231 The (p)ppGpp-binding GTPase Era promotes rRNA processing and cold shock survival in Staphylococcus aureus

Wood, A.; Irving, S. E.; Bennison, D. J.; Corrigan, R. M.

10.1101/477745 — microbiology — Posted on 2019-05-02

3232 Selection, linkage, and population structure interact to shape genetic variation among threespine stickleback genomes

Nelson, T. C.; Crandall, J. G.; Ituarte, C. M.; Catchen, J. M.; Cresko, W.

10.1101/471870 — evolutionary biology — Posted on 2019-05-02

3233 Nonparametric expression analysis using inferential replicate counts

Zhu, A.; Srivastava, A.; Ibrahim, J. G.; Patro, R.; Love, M. I.

10.1101/561084 — bioinformatics — Posted on 2019-05-02

3234 Microstructural and Functional Gradients are Increasingly Dissociated in Transmodal Cortices

Paquola, C.; Vos de Wael, R.; Wagstyl, K.; Bethlehem, R.; Seidlitz, J.; Hong, S.-J.; Bullmore, E.; Evans, A.; Misic, B.; Margulies, D.; Smallwood, J.; Bernhardt, B.

10.1101/488700 — neuroscience — Posted on 2019-05-02

3235 Altered levels of soluble markers of inflammation in people living with HIV on long term suppressive antiretroviral therapy

10.1101/418012 — immunology — Posted on 2019-05-02

3236 Open Humans: A platform for participant-centered research and personal data exploration

Greshake Tzovaras, B.; Angrist, M.; Arvai, K.; Dulaney, M.; Estrada-Galinanes, V.; Gunderson, B.; Head, T.; Lewis, D.; Nov, O.; Shaer, O.; Tzovara, A.; Bobe, J.; Price Ball, M.

10.1101/469189 — bioinformatics — Posted on 2019-05-02

3237 Effective Degrees of Freedom of the Pearson’s Correlation Coefficient under Autocorrelation

Afyouni, S.; Smith, S. M.; Nichols, T. E.

10.1101/453795 — neuroscience — Posted on 2019-05-02

3238 Perceptron learning and classification in a modeled cortical pyramidal cell

Moldwin, T.; Segev, I.

10.1101/464826 — neuroscience — Posted on 2019-05-02

3239 Selective peak inference: Unbiased estimation of raw and standardized effect size at local maxima

Davenport, S. J.; Nichols, T. E.

10.1101/500512 — neuroscience — Posted on 2019-05-02

3240 A total synthetic approach to CRISPR/Cas9 genome editing and homology directed repair

DiNapoli, S. E.; Martinez-McFaline, R.; Gribbin, C. K.; Wrighton, P.; Balgobin, C. A.; Nelson, I.; Leonard, A.; Maskin, C.; Shwartz, A.; Quenzer, E. D.; Mailhiot, D.; Kao, C.; McDonnell, S.; de Jong, J. L. O.; Goessling, W.; Houvras, Y.

10.1101/359984 — molecular biology — Posted on 2019-05-02

3241 The genomic view of diversification

Marin, J.; Achaz, G.; Crombach, A.; Lambert, A.

10.1101/413427 — evolutionary biology — Posted on 2019-05-02

3242 Microbiota of the alien species Paraleucilla magna (Porifera, Calcarea) from the Southwestern Atlantic, and a comparison with that of other calcareous sponges

Lopes, M. F.; Magna, B.; Klautau, M.; Esteves, E. L.; Albano, R. M.

10.1101/626192 — microbiology — Posted on 2019-05-02

3243 Low-Cost Solution for Rodent Home-Cage Behaviour Monitoring

Singh, S.; Bermudez-Contreras, E.; Nazari, M.; Sutherland, R. J.; Mohajerani, M.

10.1101/342501 — animal behavior and cognition — Posted on 2019-05-02

3244 The Increasing Importance of Training Awards in the Careers of Early-Stage Biomedical Academic Researchers

Pickett, C. L.

10.1101/622886 — scientific communication and education — Posted on 2019-05-02

3245 Palmitoylation is critically required for cancer intrinsic PD-1 expression and functions

Yao, H.; Li, C.; Brosseau, J.-P.; Wang, H.; Lu, H.; Fang, C.; Shi, H.; Lan, J.; Xu, J.

10.1101/625483 — cancer biology — Posted on 2019-05-02

3246 Video-based motion-resilient reconstruction of 3D position for fNIRS/EEG head mounted probes

Jaffe-Dax, S.; Bermano, A. H.; Emberson, L. L.

10.1101/621615 — neuroscience — Posted on 2019-05-02

3247 CaV3.1 channel pore pseudo-symmetry revealed by selectivity filter mutations in their domains I/II

Garza-Lopez, E.; Aldana, A.; Darszon, A.; Nishigaki, T.; Lopez-Gonzalez, I.

10.1101/626069 — biophysics — Posted on 2019-05-02

3248 Overexpression of osmosensitive Ca2+-activated channel TMEM63B promotes migration in HEK293T cells

Marques, M.; Albuquerque, I.; Vaz, S. H.; Bernardes, G.

10.1101/626010 — biochemistry — Posted on 2019-05-02

3249 DNA hypomethylation during MSC chondrogenesis occurs predominantly at enhancer regions

Barter, M. J.; Bui, C.; Cheung, K.; Gomez, R.; Skelton, A. J.; Elliott, H. R.; Reynard, L. N.; Young, D. A.

10.1101/625954 — genomics — Posted on 2019-05-02

3250 Intersection of motor volumes predicts the outcome of predator-prey interactions

Bhattacharyya, K.; McLean, D. L.; MacIver, M. A.

10.1101/626549 — animal behavior and cognition — Posted on 2019-05-02

3251 MobiLab - A Mobile Laboratory for On-Site Listening Experiments in Virtual Acoustic Environments

Pausch, F.; Fels, J.

10.1101/625962 — neuroscience — Posted on 2019-05-02

3252 Humans exploit robust locomotion by improving the stability of control signals

Santuz, A.; Bruell, L.; Ekizos, A.; Schroll, A.; Eckardt, N.; Kibele, A.; Schwenk, M.; Arampatzis, A.

10.1101/625855 — neuroscience — Posted on 2019-05-02

3253 An astrocytic basis of caloric restriction action on the brain plasticity

Plata, A.; Popov, A.; Denisov, P.; Bychkov, M.; Brazhe, A.; Lyukmanova, E.; Lazareva, N.; Verkhratsky, A.; Semyanov, A.

10.1101/625871 — neuroscience — Posted on 2019-05-02

3254 A Unifying Mechanistic Model of the Auditory Cortex with Inhibitory Subtypes

Park, Y.; Geffen, M. N.

10.1101/626358 — neuroscience — Posted on 2019-05-02

3255 Brain Responsivity to Emotional Faces Differs in Alcoholic Men and Women

Oscar-Berman, M.; Ruiz, S. M.; Marinkovic, K.; Valmas, M. M.; Harris, G. J.; Sawyer, K. S.

10.1101/496166 — neuroscience — Posted on 2019-05-02

3256 Functional genomics of the stable fly, Stomoxys calcitrans, reveals mechanisms underlying reproduction, host interactions, and novel targets for pest control

Olafson, P. U.; Aksoy, S.; Attardo, G. M.; Buckmeier, G.; Chen, X.; Coates, C. J.; Davis, M.; Dykema, J. T.; Emrich, S. J.; Friedrich, M.; Holmes, C. J.; Ioannidis, P.; Jansen, E. N.; Jennings, E. C.; Lawson, D.; Martinson, E. O.; Maslen, G. L.; Meisel, R. P.; Murphy, T. D.; Nayduch, D.; Nelson, D. R.; Oyen, K. J.; Raszick, T. J.; Ribeiro, J. M. C.; Robertson, H. M.; Rosendale, A. J.; Sackton, T. B.; Swiger, S. L.; Sze, S.-H.; Tarone, A. M.; Taylor, D. B.; Warren, W. C.; Waterhouse, R. M.; Weirauch, M. T.; Werren, J. H.; Wilson, R. K.; Zdobnov, E. M.; Benoit, J. B.

10.1101/623009 — genomics — Posted on 2019-05-02

3257 Mixed-model admixture mapping identifies smoking-dependent loci of lung function in African Americans

Ziyatdinov, A.; Parker, M. M.; Vaysse, A.; Beaty, T. H.; Kraft, P.; Cho, M. H.; Aschard, H.

10.1101/626077 — genetics — Posted on 2019-05-02

3258 Gene transcription as a limiting factor in protein production and cell growth

Metzl-Raz, E.; Kafri, M.; Yaakov, G.; Barkai, N.

10.1101/626242 — cell biology — Posted on 2019-05-02

3259 Charge and hydrophobicity are key features in sequence trained machine learning models for predicting the biophysical properties of clinical-stage antibodies.

Hebditch, M.; Warwicker, J.

10.1101/625830 — bioinformatics — Posted on 2019-05-02

3260 cohorts: A Python package for clinical ‘omics data management

Giangreco, N. P.; Fine, B. M.; Tatonetti, N. P.

10.1101/626051 — bioinformatics — Posted on 2019-05-02

3261 Cross-modal suppression of auditory association cortex by visual speech as a mechanism for audiovisual speech perception

Karas, P. J.; Magnotti, J. F.; Metzger, B. A.; Zhu, L. L.; Smith, K. B.; Yoshor, D.; Beauchamp, M. S.

10.1101/626259 — physiology — Posted on 2019-05-02

3262 The SONATA Data Format for Efficient Description of Large-Scale Network Models

Dai, K.; Hernando, J.; Billeh, Y. N.; Gratiy, S. L.; Planas, J.; Davison, A. P.; Dura-Bernal, S.; Gleeson, P.; Devresse, A.; Gevaert, M.; King, J. G.; Van Geit, W. A. H.; Povolotsky, A. V.; Muller, E.; Courcol, J.-D.; Arkhipov, A.

10.1101/625491 — neuroscience — Posted on 2019-05-02

3263 Experimental evidence of invasion facilitation in the zebra mussel-killer shrimp system

Rolla, M.; Consuegra, S.; Carrington, E.; Hall, D.; Garcia de Leaniz, C.

10.1101/626432 — ecology — Posted on 2019-05-02

3264 TPMS technology to infer biomarkers of macular degeneration prognosis in in silico simulated prototype-patients under the study of heart failure treatment with sacubitril and valsartan

Jorba, G.; Aguirre-Plans, J.; Junet, V.; Segu, C.; Ruiz, J.-L.; Pujol, A.; Fernandez-Fuentes, N.; Mas, J.-M.; Oliva, B.

10.1101/625889 — bioinformatics — Posted on 2019-05-02

3265 Xenotransplanted human cortical neurons reveal species-specific development and functional integration into mouse visual circuits.

Linaro, D.; Vermaercke, B.; Iwata, R.; Ramaswamy, A.; Davis, B.; Boubakar, L.; Libe-Philippot, B.; Bilheu, A.; De Bruyne, L.; Gall, D.; Conzelmann, K.; Bonin, V.; Vanderhaeghen, P.

10.1101/626218 — neuroscience — Posted on 2019-05-02

3266 A metabolic pathway for glucosinolate activation by the human gut symbiont Bacteroides thetaiotaomicron

Liou, C. S.; Sirk, S. J.; Diaz, C. A.; Klein, A. P.; Fischer, C. R.; Higginbottom, S. K.; Sonnenburg, J. L.; Sattely, E. S.

10.1101/626366 — microbiology — Posted on 2019-05-02

3267 Application of extracellular flux analysis for determining mitochondrial function in mammalian oocytes and early embryos

Muller, B.; Lewis, N.; Adeniyi, T.; Leese, H. J.; Brison, D.; Sturmey, R. G.

10.1101/626333 — developmental biology — Posted on 2019-05-02

3268 Taxonomic resolution of the ribosomal RNA operon in bacteria: Implications for its use with long read sequencing

Martins, L. d. O.; Page, A. J.; Charles, I. G.

10.1101/626093 — bioinformatics — Posted on 2019-05-02

3269 Unicellular Cyanobacteria Exhibit Light-Driven, Oxygen-Tolerant, Constitutive Nitrogenase Activity Under Continuous Illumination

Young, J. A.; Hildreth, M.; Gu, L.; Zhou, R.

10.1101/619353 — microbiology — Posted on 2019-05-02

3270 Genomic basis of European ash tree resistance to ash dieback fungus

Stocks, J. J.; Metheringham, C. L.; Plumb, W.; Lee, S.; Kelly, L. J.; Nichols, R. A.; Buggs, R. J. A.

10.1101/626234 — evolutionary biology — Posted on 2019-05-02

3271 Dynamic trafficking and turnover of Jam-C is essential for endothelial cell migration

Kostelnik, K. B.; Barker, A.; Schultz, C.; Rajeeve, V.; White, I. J.; Aurrand-Lions, M.; Nourshargh, S.; Cutillas, P.; Nightingale, T. D.

10.1101/625913 — cell biology — Posted on 2019-05-02

3272 Mitochondrial Morphology Regulates Organellar Ca2+ Uptake and Changes Cellular Ca2+ Homeostasis

Kowaltowski, A. J.; Menezes-Filho, S. L.; Assali, E.; Goncalves, I. G.; Abreu, P.; Miller, N.; Nolasco, P.; Laurindo, F. R. M.; Bruni-Cardoso, A.; Shirihai, O.

10.1101/624981 — cell biology — Posted on 2019-05-02

3273 ExpressWeb: A Web application for clustering and visualization of expression data.

Savelli, B.; Picard, S.; Roux, C.; Dunand, C.

10.1101/625939 — bioinformatics — Posted on 2019-05-02

3274 The metabolic response of Pseudomonas taiwanensis to NADH dehydrogenase deficiency

Nies, S. C.; Dinger, R.; Chen, Y.; Wordofa, G. G.; Kristensen, M.; Schneider, K.; Büchs, J.; Petzold, C. J.; Keasling, J. D.; Blank, L.; Ebert, B. E.

10.1101/624536 — physiology — Posted on 2019-05-02

3275 Distinguishing \"self\" from \"other\" in a dynamic synchronization task with an adaptive virtual partner.

Fairhurst, M. T.; Keller, P.; Janata, P.

10.1101/625061 — neuroscience — Posted on 2019-05-02

3276 Captive green iguana is a reservoir of diarrheogenic Escherichia coli pathotypes

Bautista-Trujillo, G. U.; Gutierrez-Miceli, F. A.; Mandujano-Garcia, L.; Oliva-Llaven, M. A.; Ibarra-Martinez, C.; Mendoza-Nazar, P.; Ruiz-Sesma, B.; Tejeda-Cruz, C.; Perez-Vazquez, L. C.; Perez-Batrez, J. E.; Vidal, J. E.; Gutierrez-Jimenez, J.

10.1101/624544 — microbiology — Posted on 2019-05-02

3277 Multiplexed dissection of a model human transcription factor binding site architecture

Davis, J. E.; Insigne, K. D.; Jones, E. M.; Hastings, Q.; Kosuri, S.

10.1101/625434 — genomics — Posted on 2019-05-02

3278 Knocking out non-muscle myosin II in retinal ganglion cells promotes long-distance optic nerve regeneration

Wang, X.-W.; Yang, S.-G.; Zhang, C.; Ma, J.-J.; Zhang, Y.; Yang, B.-B.; Weng, Y.-L.; Ming, G.-L.; Anish, K. R.; XXX, S.; Zhou, F.-Q.

10.1101/625707 — neuroscience — Posted on 2019-05-02

3279 SAMbinder: A web server for predicting SAM binding residues of a protein from its amino acid sequence

Agrawal, P.; Mishra, G.; Raghava, G. P. S.

10.1101/625806 — bioinformatics — Posted on 2019-05-02

3280 Prediction of migratory routes of the invasive fall armyworm in eastern China using a trajectory analytical approach

Li, X.-J.; Wu, M.-F.; Ma, J.; Gao, B.-Y.; Wu, Q.-L.; Chen, A.-D.; Liu, J.; Jiang, Y.-Y.; Zhai, B.-P.; Early, R.; Chapman, J. W.; Hu, G.

10.1101/625632 — animal behavior and cognition — Posted on 2019-05-02

3281 Spurious inference when comparing networks

Farine, D.; Aplin, L. M.

10.1101/619957 — animal behavior and cognition — Posted on 2019-05-02

3282 Phenanthrene contamination and ploidy level influence the rhizosphere microbiome of Spartina

Cave-Radet, A.; Monard, C.; El-Amrani, A.; Salmon, A.; Ainouche, M.; Yergeau, E.

10.1101/625657 — microbiology — Posted on 2019-05-02

3283 Efficient and robust NK-Cell transduction with Baboon Envelope pseudotyped lentivector: a major tool for immunotherapy

Colamartino, A. B. L.; Lemieux, W.; Bifsha, P.; Nicoletti, S.; Chakravarti, N.; Remon, J. S.; Romero, H.; Selleri, S.; Beland, K.; Guiot, M.; Tremblay-Laganiere, C.; Dicaire, R.; Barreiro, L.; Lee, D. A.; Verhoeyen, E.; Haddad, E.

10.1101/625285 — immunology — Posted on 2019-05-02

3284 The memory of hyperosmotic stress response in yeast is modulated by gene-positioning

Fabre, E.; Hersen, P.; Ben Meriem, Z.; Khalil, Y.

10.1101/625756 — genetics — Posted on 2019-05-02

3285 Single-molecule observation of ligand binding and conformational changes in FeuA

Boer, M. d.; Gouridis, G.; Muthahari, Y.; Cordes, T.

10.1101/624817 — biophysics — Posted on 2019-05-02

3286 Electronic Health Records Based Prediction of Future Incidence of Alzheimers Disease Using Machine Learning

Park, J. H.; Cho, H. E.; Kim, J. H.; Wall, M.; Stern, Y.; Lim, H.; Yoo, S.; Kim, H.-S.; CHA, J.

10.1101/625582 — bioinformatics — Posted on 2019-05-02

3287 Investigation of cellular stress response related heat shock protein hsp70/Hsp70 and multixenobiotic transporter abcb1 in Siberian freshwater amphipods upon cadmium exposure

Protopopova, M. V.; Pavlichenko, V. V.; Luckenbach, T.

10.1101/626184 — zoology — Posted on 2019-05-02

3288 Tmem119-EGFP and Tmem119-CreERT2 transgenic mice for labeling and manipulating microglia

Kaiser, T.; Feng, G.

10.1101/624825 — neuroscience — Posted on 2019-05-02

3289 Mammalian NSUN2 introduces 5-methylcytidines into mitochondrial tRNAs

Nakano, S.; Kitagawa, S.; Nakagawa, S.; Wei, F.-Y.; Tomizawa, K.; Araki, K.; Araki, M.; Suzuki, T.; Suzuki, T.

10.1101/624932 — molecular biology — Posted on 2019-05-02

3290 Potent, specific MEPicides for treatment of zoonotic staphylococci

Edwards, R. L.; Heueck, I.; Lee, S. G.; Shah, I. T.; Jezewski, A. J.; Miller, J. J.; Mikati, M. O.; Wang, X.; Brothers, R. C.; Heidel, K. M.; Burnham, C.-A. D.; Alvarez, S.; Fritz, S. A.; Dowd, C. S.; Jez, J. M.; Odom John, A. R.

10.1101/626325 — microbiology — Posted on 2019-05-02

3291 Gene silencing in Cryptosporidium: A rapid approach to identify novel targets for drugdevelopment

Castellanos-Gonzalez, A.; Martinez-Traverso, G.; Fishbeck, K.; Nava, S.; White, A. C.

10.1101/626317 — microbiology — Posted on 2019-05-02

3292 Mating strategy is determinant of Adenovirus prevalence in European bats

Rossetto, F.; Iglesias-Caballero, M.; Liedtke, C.; Gomez-Mestre, I.; Berciano, J. M.; Perez-Suarez, G.; de Paz, O.; Echevarria, J. E.; Casas, I.; Juste, J.

10.1101/626309 — ecology — Posted on 2019-05-02

3293 Pontoscolex corethrurus: a Homeless Invasive Tropical Earthworm?

Ortiz-Ceballos, A. I.; Ortiz-Gamino, D.; Andrade-Torres, A.; Perez-Rodriguez, P.; Lopez-Ortega, M.

10.1101/624122 — ecology — Posted on 2019-05-02

3294 Generation of transgenic quails by in vivo transfection of primordial germ cells

Serralbo, O.; Veron, N.; Cooper, C.; Dejardin, M.-J.; Doran, T.; Marcelle, C.

10.1101/625665 — developmental biology — Posted on 2019-05-02

3295 CAIX forms a transport metabolon with monocarboxylate transporters in human breast cancer cells

Ames, S.; Andring, J. T.; McKenna, R.; Becker, H. M.

10.1101/625673 — cancer biology — Posted on 2019-05-02

3296 Establishing reference samples for detection of somatic mutations and germline variants with NGS technologies

Fang, L. T.; Zhu, B.; Zhao, Y.; Chen, W.; Yang, Z.; Kerrigan, L.; Langenbach, K.; de Mars, M.; Lu, C.; Idler, K.; Jacob, H.; Yu, Y.; Ren, L.; Zheng, Y.; Jaeger, E.; Schroth, G.; Abaan, O.; Lack, J.; Shen, T.-W.; Talsania, K.; Chen, Z.; Stanbouly, S.; Shetty, J.; Kumar, P.; Bettridge, J.; Tran, B.; Meerzaman, D.; Nguyen, C.; Petitjean, V.; Sultan, M.; Cam, M.; Hung, T.; Peters, E.; Kalamegham, R.; Sahraeian, S. M. E.; Mohiyuddin, M.; Guo, Y.; Yao, L.; Song, L.; Lam, H.; Drabek, J.; Maestro, R.; Gasparotto, D.; Koks, S.; Reimann, E.; Scherer, A.; Nordlund, J.; Liljedahl, U.; Jensen, R.; Piroozni

10.1101/625624 — bioinformatics — Posted on 2019-05-02

3297 Latent periodic process inference from single-cell RNA-seq data

Liang, S.; Wang, F.; Han, J.; Chen, K.

10.1101/625566 — bioinformatics — Posted on 2019-05-02

3298 Differential gene expression is associated with degeneration of mating-type chromosomes in the absence of sexual antagonism

Ma, W.-J.; Carpentier, F.; Giraud, T.; Hood, M.

10.1101/626291 — evolutionary biology — Posted on 2019-05-02

3299 Novel application method for mesenchymal stem cell therapy utilizing its attractant-responsive accumulation property

Atsuta, I.; Ueda, N.; Ayukwa, Y.; Yamaza, T.; Furuhashi, A.; Narimatsu, I.; Matsuura, Y.; Kondo, R.; Watanabe, Y.; Zhang, X.; Koyano, K.

10.1101/626275 — cell biology — Posted on 2019-05-02

3300 CHANGES OF TLQP-21 IN RESPONSE TO GLUCOSE LOAD

Cocco, C.; Corda, G.; noli, B.; Manconi, B.; Brancia, C.; Pellegrini, M.; Naro, F.; Ferri, G.-L.

10.1101/626283 — cell biology — Posted on 2019-05-02

3301 Using distant supervision to augment manually annotated data for relation extraction

Su, P.; Li, G.; Wu, C.; Vijay-Shanker, K.

10.1101/626226 — bioinformatics — Posted on 2019-05-02

3302 Identification of candidate flowering and sex genes in white Guinea yam (D. rotundata Poir.) by SuperSAGE transcriptome profiling

Girma, G.; Natsume, S.; Carluccio, A. V.; Takagi, H.; Matsumura, H.; Uemura, A.; Muranaka, S.; Takagi, H.; Stavolone, L.; Gedil, M.; Spillane, C.; Terauchi, R.; Tamiru, M.

10.1101/626200 — plant biology — Posted on 2019-05-02

3303 Prevalence and distribution of antimicrobial resistance determinants of Escherichia coli isolates obtained from meat in South Africa

Jaja, I. F.; Oguttu, J.; Green, E.; Muchenje, V.

10.1101/626267 — microbiology — Posted on 2019-05-02

3304 Analysis of distance-based protein structure prediction by deep learning in CASP13

Xu, J.; Wang, S.

10.1101/624460 — bioinformatics — Posted on 2019-05-02

3305 Yeast surface display of full-length human microtubule-associated protein tau

Wang, S.; Cho, Y. K.

10.1101/624429 — bioengineering — Posted on 2019-05-02

3306 Insights about variation in meiosis from 31,228 human sperm genomes

Bell, A. D.; Mello, C. J.; Nemesh, J.; Brumbaugh, S. A.; Wysoker, A.; McCarroll, S. A.

10.1101/625202 — genomics — Posted on 2019-05-02

3307 Intraspecific diversity of fission yeast mitochondrial genome

Tao, Y.-T.; Suo, F.; Wang, Y.-K.; Huang, S.; Du, L.-L.

10.1101/624742 — evolutionary biology — Posted on 2019-05-02

3308 Myosin II Tension Sensors Visualize Force Generation within the Actin Cytoskeleton in Living Cells

Hart, R. G.; Kota, D.; Li, F.; Ramallo, D.; Price, A. J.; Otterpohl, K. L.; Smith, S. J.; Dunn, A. R.; Liu, J.; Chandrasekar, I.

10.1101/623249 — cell biology — Posted on 2019-05-02

3309 Intercellular Conduction Optimizes Arterial Network Function and Conserves Blood Flow Homeostasis during Cerebrovascular Challenges

Zechariah, A.; Tran, C. H. T.; Hald, B. O.; Sandow, S. L.; Sancho, M.; Fabris, S.; Tuor, U. I.; Gordon, G. R. J.; Welsh, D. G.

10.1101/625525 — neuroscience — Posted on 2019-05-02

3310 Uncovering the subtype-specific temporal order of cancer pathway dysregulation

Khakabimamaghani, S.; Ding, D.; Snow, O.; Ester, M.

10.1101/625442 — bioinformatics — Posted on 2019-05-02

3311 Biomarkers for aging identified in cross-sectional studies tend to be non-causative

Nelson, P. G.; Promislow, D.; Masel, J. G.

10.1101/624270 — bioinformatics — Posted on 2019-05-02

3312 Glomerulosclerosis and kidney failure in a mouse model of monoclonal immunoglobulin light-chain deposition disease

Bender, S.; Ayala, M. V.; Bonaud, A.; Javaugue, V.; Carrion, C.; Oblet, C.; Rinsant, A.; Quellard, N.; Kaaki, S.; Oruc, Z.; Boyer, F.; Paquet, A.; Pons, N.; Herve, B.; Ashi, M. O.; Jaccard, A.; Delpy, L.; Touchard, G.; Cogne, M.; Bridoux, F.; Sirac, C.

10.1101/624650 — pathology — Posted on 2019-05-02

3313 Functional integration of \"undead\" neurons in the olfactory system

Prieto-Godino, L. L.; Silbering, A. F.; Khallaf, M. A.; Cruchet, S.; Bojkowska, K.; Pradervand, S.; Hansson, B. S.; Knaden, M.; Benton, R.

10.1101/623488 — neuroscience — Posted on 2019-05-02

3314 Evidence for shared conceptual representations for sign and speech

Evans, S.; Price, C. J.; Diedrichsen, J.; Gutierrez-Sigut, E.; MacSweeney, M.

10.1101/623645 — neuroscience — Posted on 2019-05-02

3315 The diversity of the immunogenic components of the melanoma immunopeptidome.

Woods, K.; Faridi, P.; Ostrouska, S.; Deceneux, C.; Wong, S. Q.; Chen, W.; Aranha, R.; Croft, N. P.; Duscharla, D.; Li, C.; Ayala, R.; Cebon, J.; Purcell, A. W.; Schittenhelm, R. B.; Behren, A.

10.1101/623223 — immunology — Posted on 2019-05-02

3316 Whole genome sequencing Mycobacterium tuberculosis directly from sputum identifies more genetic diversity than sequencing from culture

Nimmo, C.; Shaw, L. P.; Doyle, R.; Williams, R.; Brien, K.; Burgess, C.; Breuer, J.; Balloux, F.; Pym, A. S.

10.1101/446849 — genomics — Posted on 2019-05-02

3317 Trajectory-based differential expression analysis for single-cell sequencing data

Van den Berge, K.; Roux de Bezieux, H.; Street, K.; Saelens, W.; Cannoodt, R.; Saeys, Y.; Dudoit, S.; Clement, L.

10.1101/623397 — bioinformatics — Posted on 2019-05-02

3318 Copper Blocks V-ATPase Activity and SNARE Complex Formation to Inhibit Yeast Vacuole Fusion

Miner, G. E.; Sullivan, K. D.; Zhang, C.; Hurst, L. R.; Starr, M. L.; Rivera-Kohr, D. A.; Jones, B. C.; Guo, A.; Fratti, R. A.

10.1101/625517 — biochemistry — Posted on 2019-05-02

3319 APOL1 is not expressed in proximal tubules and is not filtered

Blessing, N. A.; Wu, Z.; Madhavan, S.; Shin, M. K.; Hoek, M.; Sedor, J. R.; O'Toole, J. F.; Bruggeman, L. A.

10.1101/623918 — pathology — Posted on 2019-05-02

3320 Population receptive field estimates for motion-defined stimuli

Hughes, A. E.; Greenwood, J. A.; Finlayson, N. J.; Schwarzkopf, D. S.

10.1101/435735 — neuroscience — Posted on 2019-05-02

3321 Binaural Beats through the auditory pathway: from brainstem to connectivity patterns

Orozco Perez, H. D.; Dumas, G.; Lehmann, A.

10.1101/623231 — neuroscience — Posted on 2019-05-02

3322 Dopaminergic learning and arousal circuits mediate opposing effects on alcohol consumption in Drosophila

Ojelade, S. A.; Butts, A. R.; Merrill, C. B.; Champaloux, E. P.; Aso, Y.; Wolin, D.; Cofresi, R. U.; Gonzales, R. A.; Rubin, G. M.; Venton, B. J.; Rodan, A. R.; Rothenfluh, A.

10.1101/624833 — neuroscience — Posted on 2019-05-02

3323 Early life stress alters transcriptomic patterning across reward circuitry in male and female mice

Pena, C. J.; Smith, M.; Ramakrishnan, A.; Cate, H. M.; Bagot, R. C.; Kronman, H. G.; Patel, B.; Purushothaman, I.; Dudley, J. T.; Morishita, H.; Shen, L.; Nestler, E. J.

10.1101/624353 — neuroscience — Posted on 2019-05-02

3324 Deleting a UBE3A substrate rescues impaired hippocampal physiology and learning in Angelman syndrome mice

Sell, G.; Xin, W.; Cook, E.; Zbinden, M.; Schaffer, T.; OMeally, R.; Cole, R.; Bonci, A.; Margolis, S.

10.1101/625418 — neuroscience — Posted on 2019-05-02

3325 Flexible and accurate decoding of neural populations through stochastic comodulation

Haimerl, C.; Savin, C.; Simoncelli, E. P.

10.1101/624387 — neuroscience — Posted on 2019-05-02

3326 Evidence for purifying selection on conserved noncoding elements in the genome of Drosophila melanogaster

Berr, T.; Peticca, A.; Haudry, A.

10.1101/623744 — evolutionary biology — Posted on 2019-05-02

3327 Multilevel selection in groups of groups

Pruitt, J. N.; Fisher, D. N.; Costa-Pereira, R.; Pinter-Wollman, N.

10.1101/624718 — evolutionary biology — Posted on 2019-05-02

3328 The transcriptional correlates of divergent electric organ discharges in Paramormyrops electric fish

Losilla, M.; Gallant, J. R.

10.1101/625475 — evolutionary biology — Posted on 2019-05-02

3329 Rapid evolution and biogeographic spread in a colorectal cancer

Alves, J. M.; Prado-Lopez, S.; Cameselle-Teijeiro, J. M.; Posada, D.

10.1101/623850 — cancer biology — Posted on 2019-05-02

3330 ML277 specifically enhances pore opening of KCNQ1 with VSD at the activated state by modulating VSD-pore coupling

Hou, P.; Shi, J.; White, K. M.; Gao, Y.; Cui, J.

10.1101/624478 — biophysics — Posted on 2019-05-02

3331 IDH1 and IDH2 mutants identified in cancer lose inhibition by isocitrate because of a change in their binding sites

Bascur, J. P.; Alegria-Arcos, M.; Araya-Duran, I.; Juritz, E. I.; Gonzalez-Nilo, F. D.; Almonacid, D. E.

10.1101/425025 — bioinformatics — Posted on 2019-05-02

3332 A comprehensive plasma metabolomics dataset for a cohort of mouse knockouts within the international mouse phenotyping consortium

Barupal, D. K.; Zhang, Y.; Shen, T.; Fan, S.; Roberts, B. S.; Fitzgerald, P.; Wancewicz, B.; Valdiviez, L.; Wohlgemuth, G.; Byram, G.; Choy, Y.; Haffner, B.; Showalter, M. R.; Vaniya, A.; Bloszies, C. S.; Folz, J. S.; Kind, T.; Fiehn, O.

10.1101/624437 — bioinformatics — Posted on 2019-05-02

3333 Proteomics Standards Initiative Extended FASTA Format (PEFF)

10.1101/624494 — bioinformatics — Posted on 2019-05-02

3334 Transcriptomic response in symptomless roots of clubroot infected kohlrabi (Brassica oleracea var. gongylodes) mirrors resistant plants

Ciaghi, S.; Schwelm, A.; Neuhauser, S.

10.1101/391516 — plant biology — Posted on 2019-05-02

3335 Gene editing preserves visual function in a mouse model of retinal degeneration

Vagni, P.; Perlini, L. E.; Chenais, N. A. L.; Marchetti, T.; Parrini, M.; Contestabile, A.; Cancedda, L.; Ghezzi, D.

10.1101/624858 — neuroscience — Posted on 2019-05-02

3336 A Spatiomolecular Map of the Striatum.

Martin, A.; Calvigioni, D.; Tzortzi, O.; Fuzik, J.; Warnberg, E.; Meletis, K.

10.1101/613596 — neuroscience — Posted on 2019-05-02

3337 Diagnosis and Prognosis of Alzheimer’s Disease Using Brain Morphometry and White Matter Connectomes

Wang, Y.; Xu, C.; Park, J.-H.; Lee, S.; Stern, Y.; Yoo, S.; Kim, J. H.; Kim, H. S.; Cha, J.

10.1101/407601 — neuroscience — Posted on 2019-05-02

3338 Structural abnormalities in thalamo-prefrontal tracks revealed by high angular resolution diffusion imaging predict working memory scores in concussed children

Guberman, G. I.; Houde, J.-C.; Ptito, A.; Gagnon, I.; Descoteaux, M.

10.1101/624445 — neuroscience — Posted on 2019-05-02

3339 In vivo functional diversity of midbrain dopamine neurons within identified axonal projections

Farassat, N.; Costa, K. M.; Albert, S.; Kovacheva, L.; Shin, J.; Somayaji, M.; Schneider, G.; Roeper, J.

10.1101/624700 — neuroscience — Posted on 2019-05-02

3340 Single-cell chromatin accessibility analysis of mammary gland development reveals cell state transcriptional regulators and cellular lineage relationships

Chung, C.-Y.; Ma, Z.; Dravis, C.; Preissl, S.; Poirion, O.; Luna, G.; Hou, X.; Giraddi, R. R.; Ren, B.; Wahl, G. M.

10.1101/624957 — genomics — Posted on 2019-05-02

3341 Regulated spindle orientation buffers tissue growth in the epidermis

Morrow, A.; Underwood, J.; Seldin, L.; Hinnant, T.; Lechler, T.

10.1101/625228 — cell biology — Posted on 2019-05-02

3342 Prostate-Specific Antigen Dynamics Predict Individual Responses to Intermittent Androgen Deprivation

Brady, R.; Nagy, J.; Gerke, T.; Zhang, T.; Wang, A. Z.; Zhang, J.; Gatenby, R.; Enderling, H.

10.1101/624866 — cancer biology — Posted on 2019-05-02

3343 A multiscale analysis of DNA phase separation: From atomistic to mesoscale level

Sun, T.; Mirzoev, A.; Minhas, V.; Korolev, N.; Lyubartsev, A. P.; Nordenskioeld, L.

10.1101/375626 — biophysics — Posted on 2019-05-02

3344 Biotrophic interactions disentangled: In-situ localisation of mRNAs to decipher plant and algal pathogen - host interactions at single cell level.

Badstoeber, J.; Gachon, C. M. M.; Sandbichler, A. M.; Neuhauser, S.

10.1101/378794 — plant biology — Posted on 2019-05-02

3345 The effect of pupil size and peripheral brightness on detection and discrimination performance

Mathot, S.; Ivanov, Y.

10.1101/624783 — neuroscience — Posted on 2019-05-02

3346 MHC genotyping from rhesus macaque exome sequences

Caskey, J. R.; Wiseman, R. W.; Karl, J. A.; Baker, D. A.; Lee, T.; Raveendran, M.; Harris, R. A.; Hu, J.; Muzny, D. M.; Rogers, J.; O'Connor, D. H.

10.1101/625244 — immunology — Posted on 2019-05-02

3347 Pupillary dilation responses as a midlife indicator of risk for Alzheimer’s Disease: Association with Alzheimer’s disease polygenic risk

Kremen, W.; Panizzon, M.; Elman, J. A.; Granholm, E.; Andreassen, O. A.; Dale, A.; Gillespie, N.; Gustavson, D. E.; Logue, M.; Lyons, M.; Neale, M.; Reynolds, C.; Whitsel, N.; Franz, C.

10.1101/624767 — genetics — Posted on 2019-05-02

3348 When do individuals maximize their inclusive fitness?

Lehmann, L.; Rousset, F.

10.1101/624775 — evolutionary biology — Posted on 2019-05-02

3349 Fisheries-induced evolution of the circadian system and collective personality traits

Sbragaglia, V.; Lopez-Olmeda, J. F.; Frigato, E.; Bertolucci, C.; Arlinghaus, R.

10.1101/622043 — evolutionary biology — Posted on 2019-05-02

3350 Simulations of particle tracking in the oligociliated mouse node and implications for left-right symmetry breaking mechanics

Gallagher, M. T.; Montenegro-Johnson, T. D.; Smith, D. J.

10.1101/624940 — developmental biology — Posted on 2019-05-02

3351 Red blood cell-derived extracellular vesicles mediate intercellular communication in ischemic heart failure

Das, A.; Valkov, N.; Salvador, A. M.; Kur, I.; Ziegler, O.; Yeri, A.; Garcia, F. C.; Lu, S.; Khamesra, A.; Xiao, C.; Rodosthenous, R.; Li, G.; Srinivasan, S.; Toxavidis, V.; Tigges, J.; Laurent, L. C.; Momma, S.; Ghiran, I.; Das, S.

10.1101/624841 — cell biology — Posted on 2019-05-02

3352 Ankyrin-G-190 palmitoylation mediates dendrite and spine morphogenesis and is altered in response to lithium

Piguel, N. H.; Yoon, S.; De Simone, F. I.; Sanders, S. S.; Gao, R.; Horan, K. E.; Dionisio, L. E.; Garza, J. C.; Petryshen, T.; Thomas, G. M.; Smith, K. R.; Penzes, P.

10.1101/620708 — neuroscience — Posted on 2019-05-02

3353 An Electrophysiological Marker of Arousal Level in Humans

Lendner, J. D.; Helfrich, R. F.; Mander, B. A.; Romundstad, L.; Lin, J. J.; Walker, M. P.; Larsson, P. G.; Knight, R. T.

10.1101/625210 — neuroscience — Posted on 2019-05-02

3354 Mapping interactions of microbial metabolites and human receptors

Colosimo, D. A.; Kohn, J. A.; Luo, P. M.; Han, S. M.; Pickard, A. J.; Rao, A.; Cross, J. R.; Cohen, L. J.; Brady, S. F.

10.1101/614537 — microbiology — Posted on 2019-05-02

3355 A catalog of microbial genes from the bovine rumen unveils a specialized and diverse biomass-degrading environment

Li, J.; Zhong, H.; Ramayo-Caldas, Y.; Terrapon, N.; Lombard, V.; Potocki-Veronese, G.; Estelle-Fabrellas, J.; Popova, M.; Yang, Z.; Zhang, H.; Li, F.; Tang, S.; Chen, W.; Chen, B.; Li, J.; Guo, J.; Martin, C.; Maguin, E.; Xu, X.; Yang, H.; Wang, J.; Madsen, L.; Kristiansen, K.; Henrissat, B.; Ehrlich, S. D.; Morgavi, D. P.

10.1101/272690 — microbiology — Posted on 2019-05-02

3356 Significant control of Zika infection in macaques depends on the elapsing time after dengue exposure

Serrano-Collazo, C.; Perez-Guzman, E. X.; Pantoja, P.; Hassert, M. A.; Rodriguez, I. V.; Giavedoni, L. D.; Hodara, V.; Parodi, L.; Cruz, L. A.; Arana, T.; Martinez, M. I.; White, L. J.; Brien, J. D.; de Silva, A.; Pinto, A. K.; Sariol, C. A.

10.1101/625293 — immunology — Posted on 2019-05-02

3357 Novel engraftment and T cell differentiation of human hematopoietic cells in Art-/- IL2RG-/ SCID pigs

Boettcher, A.; Li, Y.; Ahrens, A.; Kiupel, M.; Byrne, K.; Loving, C.; Cino-Ozuna, A. G.; Wiarda, J.; Adur, M.; Schultz, B.; Swanson, J.; Snella, E.; Ho, C.-S.; Charley, S.; Kiefer, Z.; Cunnick, J.; Powell, E.; Dell'Anna, G.; Jens, J.; Sathe, S.; Goldman, F.; Westin, E.; Dekkers, J.; Ross, J.; Tuggle, C.

10.1101/614404 — immunology — Posted on 2019-05-02

3358 Genetic image-processing using regularized selection indices

Lopez-Cruz, M. A.; Olson, E.; Rovere, G.; Crossa, J.; Dreisigacker, S.; Mondal, S.; Singh, R.; de los Campos, G.

10.1101/625251 — genetics — Posted on 2019-05-02

3359 Inference of coevolutionary dynamics and parameters from host and parasite polymorphism data of repeated experiments

Maerkle, H.; Tellier, A.

10.1101/625301 — evolutionary biology — Posted on 2019-05-02

3360 Deceptive combined effects of short allele dominance and stuttering: an example with Ixodes scapularis, the main vector of Lyme disease in the U.S.A.

De Meeus, T.; Chan, C. T.; Ludwig, J. M.; Tsao, J. I.; Patel, J.; Bhagatwala, J.; Beati, M.

10.1101/622373 — evolutionary biology — Posted on 2019-05-02

3361 Empirical test of crab-clam predator-prey model predictions: storm-driven phase shift to a low-density steady state

Glaspie, C. N.; Seitz, R. D.; Lipcius, R. N.

10.1101/224097 — ecology — Posted on 2019-05-02

3362 All-FIT: Allele-Frequency-based Imputation of Tumor Purity from High-Depth Sequencing Data

Loh, J. W.; Guccione, C.; Di Clemente, F.; Riedlinger, G.; Ganesan, S.; Khiabanian, H.

10.1101/625376 — bioinformatics — Posted on 2019-05-02

3363 A VEGF reaction-diffusion mechanism that selects variable densities of endothelial tip cells

Bedell, W.; Stroock, A.

10.1101/624999 — systems biology — Posted on 2019-05-02

3364 Novel Pure αVβ3 Integrin Antagonists That Do Not Induce Receptor Extension, Prime the Receptor, or Enhance Angiogenesis at Low Concentrations

10.1101/620765 — pharmacology and toxicology — Posted on 2019-05-02

3365 Cortical Foxp2 supports behavioral flexibility and developmental dopamine D1 receptor expression

Co, M.; Hickey, S. L.; Kulkarni, A.; Harper, M.; Konopka, G.

10.1101/624973 — neuroscience — Posted on 2019-05-02

3366 A minimal model for microbial biodiversity can reproduce experimentally observed ecological patterns

Marsland, R.; Cui, W.; Mehta, P.

10.1101/622829 — microbiology — Posted on 2019-05-02

3367 Dividing subpopulation of Escherichia coli in stationary phase

Joers, A.; Liske, E.; Tenson, T.

10.1101/614974 — microbiology — Posted on 2019-05-02

3368 Models for infantile hypertrophic pyloric stenosis development in patients with esophageal atresia

ten Kate, C. A.; Brouwer, R. W. W.; van Bever, Y.; Martens, V. K.; Brands, T.; van Beelen, N. W. G.; Brooks, A. S.; Huigh, D.; Eussen, B. J. F. M. M.; van IJcken, W. F. J.; IJsselstijn, H.; Tibboel, D.; Wijnen, R. M. H.; de Klein, A.; Hofstra, R. M. W.; Brosens, E.

10.1101/625921 — genetics — Posted on 2019-05-02

3369 Microbial metabolite fluxes in a model marine anoxic ecosystem

Louca, S.; Astor, Y. M.; Doebeli, M.; Taylor, G. T.; Scranton, M. I.

10.1101/625087 — ecology — Posted on 2019-05-02

3370 Comparative phosphorylation map of Dishevelled3 (DVL3)

Hanakova, K.; Bernatik, O.; Ovesna, P.; Kravec, M.; Micka, M.; Radsetoulal, M.; Potesil, D.; Cajanek, L.; Zdrahal, Z.; Bryja, V.

10.1101/621896 — cell biology — Posted on 2019-05-02

3371 Linker dependence of avidity in multivalent interactions between disordered proteins

Sorensen, C. S.; Jendroszek, A.; Kjaergaard, M.

10.1101/625327 — biophysics — Posted on 2019-05-02

3372 Transcriptomic networks implicate neuronal energetic abnormalities in three mouse models harboring autism and schizophrenia-associated mutations

Gordon, A.; Gronborg-Forsingdal, A.; Klewe, I. V.; Nielsen, J.; Didriksen, M.; Werge, T.; Geschwind, D. H.

10.1101/625368 — bioinformatics — Posted on 2019-05-02

3373 Changes in lipid composition and ultrastructure associated with functional maturation of the cuticle during adult maize leaf development

Bourgault, R.; Matschi, S.; Vasquez, M.; Qiao, P.; Sonntag, A.; Charlebois, C.; Mohammadi, M.; Scanlon, M. J.; Smith, L. G.; Molina, I.

10.1101/625343 — plant biology — Posted on 2019-05-02

3374 Hepatitis C virus infection is inhibited by a non-canonical antiviral signaling pathway targeted by NS3-NS4A

Vazquez, C.; Tan, C. Y.; Horner, S. M.

10.1101/625640 — microbiology — Posted on 2019-05-02

3375 Massively parallel reporter assays combined with cell-type specific eQTL informed multiple melanoma loci and identified a pleiotropic function of HIV-1 restriction gene, MX2, in melanoma promotion

Choi, J.; Zhang, T.; Vu, A.; Ablain, J.; Makowski, M. M.; Colli, L. M.; Xu, M.; Rothschild, H.; Grawe, C.; Kovacs, M. A.; Brossard, M.; Taylor, J.; Pasaniuc, B.; Chari, R.; Chanock, S. J.; Hoggart, C. J.; Demenais, F.; Barrett, J. H.; Law, M. H.; Iles, M. M.; Yu, K.; Vermeulen, M.; Zon, L. I.; Brown, K. M.

10.1101/625400 — genomics — Posted on 2019-05-02

3376 C1orf109L promote R-loop accumulation induced DNA damage to inhibit cell growth

Yu, L.; Fang, H.; Peng, D.; Yiqun, L.; Wanqiu, X.; Xiaoqing, Z.; Dandan, Z.; Yanpeng, C.; Shupei, Q.; Xiaohan, Z.; Luqman Akhtar, M.

10.1101/625749 — cell biology — Posted on 2019-05-02

3377 Glyoxal Does Not Preserve Cellular Proteins as Accurately as PFA: A Microscopical Survey of Epitopes

Topal Celikkan, F.; Mungan, C.; Sucu, M.; Uysal, F.; Kahveci, S.; Hayme, S.; Kuscu, N.; Ozkavukcu, S.; Celik-Ozenci, C.; Can, A.

10.1101/625863 — cell biology — Posted on 2019-05-02

3378 Defining the relevant combinatorial space of the PKC/CARD-CC signal transduction nodes

Staal, J.; Driege, Y.; Haegman, M.; Iliaki, S.; Vanneste, D.; Affonina, I. S.; Braun, H.; Beyaert, R.

10.1101/228767 — systems biology — Posted on 2019-05-02

3379 A neuromimetic approach to the serial acquisition, long-term storage, and selective utilization of overlapping memory engrams

Quintanar-Zilinskas, V.

10.1101/621201 — neuroscience — Posted on 2019-05-01

3380 Transcriptional Regulation and Mechanism of SigN (ZpdN), a pBS32 encoded Sigma Factor

Burton, A. T.; DeLoughery, A.; Li, G.-W.; Kearns, D. B.

10.1101/624585 — microbiology — Posted on 2019-05-01

3381 Reduced Permeability to Rifampicin by Capsular Thickening as a Mechanism of Antibiotic Persistence in Mycobacterium tuberculosis

Sebastian, J.; Swaminath, S.; Ajitkumar, P.

10.1101/624569 — microbiology — Posted on 2019-05-01

3382 The swim-up technique separates bovine sperm by metabolic rates, motility and tail length

Magdanz, V.; Boryshpolets, S.; Ridzewski, C.; Eckel, B.; Reinhardt, K.

10.1101/624502 — zoology — Posted on 2019-05-01

3383 Pharmacodynamics of linezolid-plus-fosfomycin against vancomycin-susceptible and -resistant enterococci in vitro and in vivo of a Galleria mellonella larval infection model

Qi, C. f.; Xu, S. l.; Wu, M. m.; Zhu, S.; Liu, Y.-Y.; Huang, H.; Zhang, G. j.; Li, J.; Huang, X. h.

10.1101/624577 — pharmacology and toxicology — Posted on 2019-05-01

3384 Computational and experimental analysis of the glycophosphatidylinositol-anchored proteome of the human parasitic nematode Brugia malayi

Mersha, F.; Cortes, L.; Luck, A.; McClung, C.; Ruse, C.; Taron, C.; Foster, J.

10.1101/625111 — molecular biology — Posted on 2019-05-01

3385 Significantly different expression levels of microRNAs associated with vascular invasion in hepatocellular carcinoma and their prognostic significance after surgical resection

Song, S. K.; Jung, W. Y.; Park, S.-K.; Chung, C.-W.; Park, Y. K.

10.1101/625095 — cancer biology — Posted on 2019-05-01

3386 The Human Default Consciousness and its Disruption: Insights from an EEG Study of Buddhist Jhana Meditation

Dennison, P.

10.1101/407544 — neuroscience — Posted on 2019-05-01

3387 A direct glia-to-neuron natural transdifferentiation ensures nimble sensory-motor coordination of male mating behaviour

Molina-Garcia, L.; Kim, B.; Cook, S. J.; Bonnington, R.; O'Shea, J.; Sammut, M.; Gilbert, S. P. R.; Elliott, D.; Hall, D. H.; Emmons, S. W.; Barrios, A.; Poole, R. J.

10.1101/285320 — neuroscience — Posted on 2019-05-01

3388 Evolutionary analyses of base-pairing interactions in DNA and RNA secondary structures

Golden, M. T.; Murrell, B.; Pybus, O.; Martin, D.; Hein, J.

10.1101/419341 — molecular biology — Posted on 2019-05-01

3389 Oregano powder reduces Streptococcus and increases SCFA concentration in a mixed bacterial culture assay of chicken.

Bauer, B. W.; Gangadoo, S.; Bajagai, Y. S.; Van, T. T. H.; Moore, R. J.; Stanley, D.

10.1101/625152 — microbiology — Posted on 2019-05-01

3390 Transcriptome-wide map of m6A circRNAs identified in hypoxic pulmonary hypertension rat model

Su, H.; Zhou, L.; Li, N.; Wang, G.; Wu, L.; Ma, X.; Ying, K.; Ruifeng, Z.

10.1101/625178 — genetics — Posted on 2019-05-01

3391 Bacteria isolated from bengal cat (Felis catus x Prionailurus bengalensis) anal sac secretions produce volatile compounds associated with animal signaling

Konishi, M. S.; Ganz, H. E.; Cho, A. W.; Zaw, T. H.; Jospin, G.; McCartney, M. M.; Davis, C. E.; Eisen, J.; Coil, D. A.

10.1101/625079 — animal behavior and cognition — Posted on 2019-05-01

3392 Time-resolved genome-scale profiling reveals a causal expression network

Hackett, S. R.; Baltz, E. A.; Coram, M.; Wranik, B. J.; Kim, G.; Baker, A.; Fan, M.; Hendrickson, D. G.; Berndl, M.; McIsaac, R. S.

10.1101/619577 — systems biology — Posted on 2019-05-01

3393 Laccaria bicolor MiSSP8 is a small-secreted protein decisive for the establishment of the ectomycorrhizal symbiosis

Pellegrin, C.; Daguerre, Y.; Ruytinx, J.; Guinet, F.; Kemppainen, M.; Frei dit Frey, N.; Puech-Pages, V.; HECKER, A.; Pardo, A. G.; MARTIN, F.; Veneault-Fourrey, C.

10.1101/218131 — plant biology — Posted on 2019-05-01

3394 Genetic characterization of a recombinant myxoma virus leap into the Iberian hare (Lepus granatensis)

Agueda-Pinto, A.; Lemos de Matos, A.; Abrantes, M.; Kraberger, S.; Risalde, M. A.; Gortazar, C.; McFadden, G.; Varsani, A.; Esteves, P. J.

10.1101/624338 — microbiology — Posted on 2019-05-01

3395 An exposition of ejaculate senescence and its inhibition in Drosophila

Sepil, I.; Hopkins, B. R.; Dean, R.; Bath, E.; Friedman, S.; Swanson, B.; Ostridge, H.; Buehner, N.; Wolfner, M.; Konietzny, R.; Thezenas, M.-L.; Sandham, E.; Charles, P. D.; Fischer, R.; Steinhauer, J.; Kessler, B.; Wigby, S.

10.1101/624734 — evolutionary biology — Posted on 2019-05-01

3396 Cross-regulation between CDK and MAPK control cellular fate

Durandau, E.; Pelet, S.

10.1101/274787 — cell biology — Posted on 2019-05-01

3397 Maternal biomarker patterns for metabolism and inflammation in pregnancy are influenced by multiple micronutrient supplementation and associated with childrens’s biomarker patterns and nutritional status at 9-12 years of age in Lombok, Indonesia

Priliani, L.; Oktavianthi, S.; Prado, E. L.; Malik, S. G.; Shankar, A. H.

10.1101/625103 — molecular biology — Posted on 2019-05-01

3398 Staphylococcus aureus uses the bacilliredoxin (BrxAB)/bacillithiol disulfide reductase (YpdA) redox pathway to defend against oxidative stress under infections

Linzner, N.; Loi, V. V.; Fritsch, V. N.; Tung, Q. N.; Stenzel, S.; Wirtz, M.; Hell, R.; Hamilton, C.; Tedin, K.; Fulde, M.; Antelmann, H.

10.1101/624676 — microbiology — Posted on 2019-05-01

3399 Role of ethnicity and socio-economic status (SES) in the presentation of retinoblastoma: findings from the UK

Bourkiza, R.; Cumberland, P.; Abeysekera, H.; Parulekar, M.; Sagoo, M. S.; Rahi, J.; Reddy, A.

10.1101/625160 — epidemiology — Posted on 2019-05-01

3400 Parasite manipulation of the host cell cycle as a means to block inflammatory signaling and promote intracellular replication

Wong, Z. S.; Sokol, S. L.; Dubey, J. P.; Boyle, J. P.

10.1101/625194 — cell biology — Posted on 2019-05-01

3401 Evolution and global transmission of a multidrug-resistant, community-associated MRSA lineage from the Indian subcontinent

Steinig, E. J.; Duchene, S.; Robinson, D. A.; Monecke, S.; Yokoyama, M.; Laabei, M.; Slickers, P.; Andersson, P.; Williamson, D.; Kearns, A.; Goering, R.; Dickson, E.; Ehricht, R.; Ip, M.; O'Sullivan, M. V.; Coombs, G. W.; Petersen, A.; Brennan, G.; Shore, A. C.; Coleman, D. C.; Pantosti, A.; de Lencastre, H.; Westh, H.; Kobayashi, N.; Heffernan, H.; Strommenger, B.; Layer, F.; Weber, S.; Aamot, H.; Skakni, L.; Peacock, S. J.; Sarovich, D.; Giffard, P.; Harris, S.; Parkhill, J.; Massey, R. C.; Holden, M. T.; Bentley, S. D.; Tong, S. Y.

10.1101/233395 — microbiology — Posted on 2019-05-01

3402 Introgressed Manihot glaziovii Alleles in Modern Cassava Germplasm Benefit Important Traits and Are Under Balancing Selection

Wolfe, M. D.; Bauchet, G. J.; Chan, A. W.; Lozano, R.; Ramu, P.; Egesi, C.; Kawuki, R.; Kulakow, P.; Rabbi, I.; Jannink, J.-L.

10.1101/624114 — genetics — Posted on 2019-05-01

3403 A systematic survey of regional multitaxon biodiversity: evaluating strategies and coverage

Brunbjerg, A. K.; Bruun, H. H.; Broendum, L.; Classen, A. T.; Dalby, L.; Fog, K.; Froeslev, T. G.; Goldberg, I.; Hansen, M. D. D.; Hoeye, T. T.; Illum, A. A.; Laessoee, T.; Newman, G.; Skipper, L.; Soechting, U.; Ejrnaes, R.

10.1101/158030 — ecology — Posted on 2019-05-01

3404 Stanford Accelerated Intelligent Neuromodulation Therapy for Treatment-Resistant Depression (SAINT-TRD).

Cole, E.; Stimpson, K. H.; Gulser, M.; Cherian, K.; Tischler, C.; Nejad, R.; Bentzley, B. S.; Pankow, H.; Choi, E.; Aaron, H.; Espil, F. M.; Pannu, J.; Xiao, X.; Duvio, D.; Solvason, H. B.; Hawkins, J.; Keller, J.; Schatzberg, A. F.; Sudheimer, K. D.; Williams, N. R.

10.1101/581280 — clinical trials — Posted on 2019-05-01

3405 Impact of Itga2-Gp6-double collagen receptor deficient mice for bone marrow megakaryocytes and platelets

Semeniak, D.; Faber, K.; Öftering, P.; Manukjan, G.; Schulze, H.

10.1101/625038 — cell biology — Posted on 2019-05-01

3406 The Ras family members follow the blood progesterone level during formation and regression in bovine corpus luteum

Lee, S.-H.; Lee, S.

10.1101/625186 — cell biology — Posted on 2019-05-01

3407 MCSS-based Docking and Improved Scoring of Protein-Nucleotide Complexes: I. A step forward to the Fragment-Based Design of Oligonucleotides

Chevrollier, N.; Leclerc, F.

10.1101/622068 — bioinformatics — Posted on 2019-05-01

3408 R Functions for Analysis of Continuous Glucose Monitor Data

Vigers, T.; Chan, C. L.; Snell-Bergeon, J.; Bjornstad, P.; Zeitler, P.; Forlenza, G.; Pyle, L.

10.1101/625137 — bioinformatics — Posted on 2019-05-01

3409 Sperm-particle interactions and their prospects for charge mapping

Magdanz, V.; Gebauer, J.; Sharan, P.; Eltoukhy, S.; Voigt, D.; Simmchen, J.

10.1101/624510 — bioengineering — Posted on 2019-05-01

3410 The Catalytic Core of DEMETER Guides Active DNA Demethylation in Arabidopsis

Zhang, C.; Hung, Y.-H.; Zhang, X.-Q.; Zhang, D.; Frost, J. M.; Liu, F.; Xiao, W.; Iyer, L. M.; Aravind, L.; Huh, J. H.; Fischer, R. L.; Hsieh, T.-F.

10.1101/623843 — plant biology — Posted on 2019-05-01

3411 Significant enrichment of Herpesvirus interactors in GWAS data suggests causal inferences for the association between Epstein Barr virus and multiple sclerosis

Mechelli, R.; Umeton, R.; Srinivasan, S.; Fornasiero, A.; Ferraldeschi, M.; Internatl Multiple Sclerosis Consortium & WTCCC2, ; Centonze, D.; Farina, C.; Salvetti, M.; Ristori, G.

10.1101/624049 — neuroscience — Posted on 2019-05-01

3412 Selection of appropriate reference genes for quantitative real-time PCR in Clerodendrum trichotomum

Yang, X.; Hua, Y.; Yue, Y.; Chen, G.; Yan, T.; Ding, W.; Shi, T.; Hu, D.; Wang, L.

10.1101/625145 — molecular biology — Posted on 2019-05-01

3413 A New Suite of Allelic Exchange Vectors for the Scarless Modification of Proteobacterial Genomes

Lazarus, J. E.; Warr, A. R.; Kuehl, C. J.; Giorgio, R. T.; Davis, B. M.; Waldor, M. K.

10.1101/624551 — microbiology — Posted on 2019-05-01

3414 A flexible simulation toolkit for designing and evaluating ChIP-sequencing experiments

Zheng, A.; Lamkin, M.; Qiu, Y.; Ren, K.; Goren, A.; Gymrek, M.

10.1101/624486 — genomics — Posted on 2019-05-01

3415 Matryoshka RNA virus 1: a novel RNA virus associated with Plasmodium parasites in human malaria

Charon, J.; Grigg, M. J.; Eden, J.-S.; Piera, K. A.; William, T.; Rose, K.; Davenport, M. P.; Anstey, N. M.; Holmes, E. C.

10.1101/624403 — evolutionary biology — Posted on 2019-05-01

3416 Purification and characterization of fat body lipase from the Greater Wax Moth Galleria mellonella (Lepidoptera: Pyralidae).

Mahdy, R. R. Z.; Mo`men, S. A.; Abd El-Bar, M. M.; Barakat, E. M. S.

10.1101/625129 — physiology — Posted on 2019-05-01

3417 Comparison of the effects of running and badminton on executive function: a within-subjects design

Takahashi, S.; Grove, P. M.

10.1101/625046 — neuroscience — Posted on 2019-05-01

3418 Multi-trait genome-wide association meta-analysis of dietary intake identifies new loci and genetic and functional links with metabolic traits

Merino, J.; Dashti, H. S.; Sarnowski, C.; Lane, J. M.; Udler, M. S.; Todorov, P. V.; Song, Y.; Wang, H.; Kim, J.; Tucker, C.; Campbell, J.; Tanaka, T.; Chu, A. Y.; Tsai, L.; Pers, T. H.; Chasman, D. I.; Dupuis, J.; Rutter, M. K.; Florez, J. C.; Saxena, R.

10.1101/623728 — genetics — Posted on 2019-05-01

3419 Feral pig exclusion fencing provides limited fish conservation value on tropical floodplains

Waltham, N.; Schaffer, J.

10.1101/625053 — ecology — Posted on 2019-05-01

3420 Targeting Fe3O4 Au nanoparticles in photoacoustic nuclear magnetic dual-mode imaging

Zhang, R.; Protealo, D.

10.1101/624395 — bioengineering — Posted on 2019-05-01

3421 Feedback inhibition and its control in an insect olfactory circuit

Ray, S.; Aldworth, Z. N.; Stopfer, M. A.

10.1101/624528 — neuroscience — Posted on 2019-05-01

3422 Prevalence, awareness and control of hypertension in Malaysia 1980 - 2017: A Systematic Review and Meta-Analysis

Chow, Z. Y.; Soo, M. J.; Ching, S. M.; Tan, C. H.; Lee, K. W.; Devaraj, N. K.; Salim, H. S.; Ramachandran, V.; Hoo, F. K.; Cheong, A. T.; Chia, Y. C.

10.1101/625004 — epidemiology — Posted on 2019-05-01

3423 MULTICENTER STUDY OF THE BURDEN OF MULTIDRUG-RESISTANT BACTERIA IN THE ETIOLOGY OF INFECTED DIABETIC FOOT ULCERS

Adeyemo, A. T.; Kolawole, B.; Rotimi, V. O.; Aboderin, A. O.

10.1101/625012 — epidemiology — Posted on 2019-05-01

3424 VARIANT ANALYSIS PIPELINE FOR ACCURATE DETECTION OF GENOMIC VARIANTS FROM TRANSCRIPTOME SEQUENCING DATA.

Adetunji, M.; Schmidt, C. J.; Abasht, B.; Lamont, S. J.

10.1101/625020 — bioinformatics — Posted on 2019-05-01

3425 Identification of master regulators in goblet cells and Paneth cells using transcriptomics profiling of gut organoids and multi-layered networks

Treveil, A.; Sudhakar, P.; Matthews, Z. J.; Wrzesinski, T.; Jones, E. J.; Brooks, J.; Olbei, M.; Hautefort, I.; Hall, L. J.; Carding, S. R.; Mayer, U.; Powell, P. P.; Wileman, T.; Di Palma, F.; Haerty, W.; Korcsmaros, T.

10.1101/575845 — systems biology — Posted on 2019-05-01

3426 Pre-Settlement Forests around Puget Sound: Eyewitness Evidence

Schroeder, T.

10.1101/592733 — plant biology — Posted on 2019-05-01

3427 Time-resolved genome-scale profiling reveals a causal expression network

Hackett, S. R.; Baltz, E. A.; Coram, M.; Wranik, B. J.; Kim, G.; Baker, A.; Fan, M.; Hendrickson, D. G.; Berndl, M.; McIsaac, R. S.

10.1101/619577 — systems biology — Posted on 2019-05-01

Archive, 2019-05