bioRxiv directory

Suyash S. Shringarpure;Rasika A. Mathias;Ryan D Hernandez;Timothy D. O'Connor;Zachary A. Szpiech;Raul Torres;Francisco M. De La Vega;Carlos D. Bustamante;Kathleen C. Barnes;Margaret A. Taub;on behalf of the CAAPA consortium;

10.1101/078642 — Bioinformatics — Posted on 2016-09-30

11 Real-time tagging of biomedical entities

Evangelos Pafilis;Lars Juhl Jensen;

10.1101/078469 — Bioinformatics — Posted on 2016-09-30

12 Gender disparity in computational biology research publications

Kevin S. Bonham;Melanie I. Stefan;

10.1101/070631 — — Posted on 2016-09-09

13 Calculation of a distribution free estimate of effect size and confidence intervals using VBA/Excel

Joachim Goedhart;

10.1101/073999 — — Posted on 2016-09-10

14 Calculation of a distribution free estimate of effect size and confidence intervals using VBA/Excel

Joachim Goedhart;

10.1101/073999 — — Posted on 2016-09-08

15 Assessing data quality in citizen science - preprint

Margaret Kosmala;Andrea Wiggins;Alexandra Swanson;Brooke Simmons;

10.1101/074104 — — Posted on 2016-09-08

16 Mito-nuclear Incompatibilities and Mitochondrial Replacement Therapy

Adam Eyre-Walker;

10.1101/078329 — Genetics — Posted on 2016-09-30

17 Comparative analysis of variation and selection in the HCV genome

Juan Angel Patino Galindo;Fernando Gonzalez Candelas;

10.1101/078584 — Evolutionary Biology — Posted on 2016-09-30

18 AGO4 is specifically required for heterochromatic siRNA accumulation at Pol V-dependent loci in Arabidopsis thaliana

Feng Wang;Michael J Axtell;

10.1101/078394 — Plant Biology — Posted on 2016-09-30

19 Quantitative Seq-LGS: Genome-Wide Identification of Genetic Drivers of Multiple Phenotypes in Malaria Parasites

Hussein Abkallo;Axel Martinelli;Megumi Inoue;Abhinay Ramaprasad;Phonepadith Xangsayarath;Jesse Gitaka;Jianxia Tang;Kazuhide Yahata;Augustin Zoungrana;Hayato Mitaka;Paul Hunt;Richard Carter;Osamu Kaneko;Ville Mustonen;Christopher JR Illingworth;Arnab Pain;Richard Culleton;

10.1101/078451 — Genomics — Posted on 2016-09-30

20 MUMdex: MUM-based structural variation detection

Peter A Andrews;Ivan Iossifov;Jude Kendall;Steven Marks;Lakshmi Muthuswamy;Zihua Wang;Dan Levy;Michael Wigler;

10.1101/078261 — Genomics — Posted on 2016-09-30

21 Quantifying the evolutionary potential and constraints of a drug-targeted viral protein

Lei Dai;Yushen Du;Hangfei Qi;Nicholas C Wu;James O Lloyd-Smith;Ren Sun;

10.1101/078428 — Evolutionary Biology — Posted on 2016-09-30

22 Heterogeneity of single-cell mechanical responses to tumorigenic factors.

Aldo Leal-Egana;Gaelle Letort;Jean-Louis Martiel;Andreas Christ;Timothee Vignaud;Caroline Roelants;Odile Filhol;Manuel THERY;

10.1101/078154 — Cell Biology — Posted on 2016-09-30

23 Mitochondrial DNA Density Homeostasis Accounts for the Threshold Effect in Human Mitochondrial Disease

Juvid Aryaman;Iain G Johnston;Nick S Jones;

10.1101/078519 — Cell Biology — Posted on 2016-09-30

24 Estimating the timing of multiple admixture events using 3-locus Linkage Disequilibrium

Mason Liang;Rasmus Nielsen;

10.1101/078378 — Bioinformatics — Posted on 2016-09-30

25 A forward model at Purkinje cell synapses facilitates cerebellar anticipatory motor control

Ivan Herreros;Xerxes D Arsiwalla;Paul F.M.J. Verschure;

10.1101/078410 — Neuroscience — Posted on 2016-09-30

26 Human enhancers associated with immune response harbour specific sequence composition, activity, and genome organization

Charles-Henri Lecellier;Wyeth W Wasserman;Remo Rohs;Anthony Mathelier;

10.1101/078477 — Genomics — Posted on 2016-09-30

27 PyVar: An Extensible Framework for Variant Annotator Comparison

Julie Wertz;Thomas B Bair;Michael S Chimenti;

10.1101/078386 — Bioinformatics — Posted on 2016-09-30

28 SCFSlmb recognizes a conserved degron within the survival motor neuron (SMN) self-interaction domain to mediate ubiquitylation of SMN and SMNΔ7 isoforms

Kelsey M Gray;Kevin A Kaifer;David Baillat;Ying Wen;Jacqueline J Glascock;Allison D Ebert;Sara ten Have;Angus I Lamond;Eric J Wagner;Christian L Lorson;A. Gregory Matera;

10.1101/078337 — Biochemistry — Posted on 2016-09-30

29 An odor delivery system for arbitrary time-varying patterns of odors, mixtures and concentrations

Priyanka Gupta;Dinu F Albeanu;Upinder S Bhalla;

10.1101/077875 — Neuroscience — Posted on 2016-09-29

30 Modeling of axonal endoplasmic reticulum network by spastic paraplegia proteins

Belgin Yalçın;Lu Zhao;Martin Stofanko;Niamh C O'Sullivan;ZiHan Kang;Sophie Zaessinger;Alex L Patto;Valentina Baena;Mark Terasaki;Cahir J. O'Kane;

10.1101/069005 — Cell Biology — Posted on 2016-09-29

31 Multiresolution functional brain parcellation in an elderly population with no or mild cognitive impairment

Angela Tam;Christian Dansereau;AmanPreet Badhwar;Pierre Orban;Sylvie Belleville;Howard Chertkow;Alain Dagher;Alexandru Hanganu;Oury Monchi;Pedro Rosa-Neto;Amir Shmuel;John Breitner;Pierre Bellec;Alzheimer's Disease Neuroimaging Initiative;

10.1101/077974 — Neuroscience — Posted on 2016-09-29

32 Myosin II controls junction fluctuations to guide epithelial tissue ordering

Scott Curran;Charlotte Strandkvist;Jasper Bathmann;Marc de Gennes;Alexandre Kabla;Guillaume Salbreux;Buzz Baum;

10.1101/078204 — Cell Biology — Posted on 2016-09-29

33 A pipeline approach to single-particle processing in RELION

Rafael Fernandez-Leiro;Sjors Scheres;

10.1101/078352 — Biophysics — Posted on 2016-09-29

34 A shotgun approach to identify mechanical nociception genes.

Melissa G Christianson;Stephanie E. Mauthner;Dan Tracey;

10.1101/077644 — Neuroscience — Posted on 2016-09-28

35 Can we test the influence of prosociality on high frequency heart rate variability? A double-blind sham-controlled approach.

Brice Beffara;Martial Mermillod;Nicolas Vermeulen;

10.1101/078006 — Neuroscience — Posted on 2016-09-28

36 Theta Oscillations in the Human Medial Temporal Lobe during Real World Ambulatory Movement

Zahra M. Aghajan;Peter Schuette;Tony Fields;Michelle Tran;Sameed Siddiqui;Nick Hasulak;Thomas K Tcheng;Dawn Eliashiv;John Stern;Itzhak Fried;Nanthia Suthana;

10.1101/078055 — Neuroscience — Posted on 2016-09-28

37 A Rapid Subcortical Amygdala Route for Faces Irrespective of Spatial Frequency and Emotion

Jessica McFadyen;Martial Mermillod;Jason Mattingley;Veronika Halasz;Marta Garrido;

10.1101/078097 — Neuroscience — Posted on 2016-09-28

38 AN INTERNATIONAL INTER-LABORATORY DIGITAL PCR STUDY DEMONSTRATES HIGH REPRODUCIBILITY FOR THE MEASUREMENT OF A RARE SEQUENCE VARIANT

Alexandra S Whale;Alison S Devonshire;George Karlin-Neumann;Jack Regan;Leanne Javier;Simon Cowen;Ana Fernandez-Gonzalez;Gerwyn M Jones;Nicholas Redshaw;Julia Beck;Andreas W Berger;Valerie Combaret;Nina Dahl Kjersgaard;Lisa Davis;Frederic Fina;Tim Forshew;Rikke Fredslund Andersen;Silvia Galbiati;Alvaro Gonzalez Hernandez;Charles Haynes;Filip Janku;Roger Lacave;Justin Lee;Vilas Mistry;Alexandra Pender;Anne Pradines;Charlotte Proudhon;Lao Saal;Elliot Stieglitz;Bryan Ulrich;Carole A Foy;Helen Parkes;Svilen Tzonev;Jim Huggett;

10.1101/077917 — Molecular Biology — Posted on 2016-09-28

39 Educational attainment and personality are genetically intertwined

Rene Mottus;Anu Realo;Uku Vainik;Juri Allik;Tonu Esko;

10.1101/078014 — Genetics — Posted on 2016-09-28

40 A phylogenetic codon substitution model for antibody lineages

Kenneth Hoehn;Gerton Lunter;Oliver Pybus;

10.1101/078279 — Evolutionary Biology — Posted on 2016-09-28

41 Approximate Likelihood Inference of Complex Population Histories and Recombination from Multiple Genomes

Champak Beeravolu Reddy;Michael J. Hickerson;Laurent A.F. Frantz;Konrad Lohse;

10.1101/077958 — Evolutionary Biology — Posted on 2016-09-28

42 Actomyosin Contractility Drives Bile Regurgitation as an Early Homeostatic Response to Increased Biliary Pressure in Obstructive Cholestasis

Kapish Gupta;Qiushi Li;Junjun Fan;Eliza Li Shan Fong;Ziwei Song;Shupei Mo;Haoyu Tang;Inn Chuan Ng;Chan Way Ng;Pornteera Pawijit;Shuangmu Zhuo;Chen-Yuan Dong;Boon Chuan Low;Aileen Wee;Yock Young Dan;Pakorn Kanchanawong;Peter So;Virgile Viasnoff;Hanry Yu;

10.1101/077792 — Cell Biology — Posted on 2016-09-28

43 Predicting Protein Thermostability Upon Mutation Using Molecular Dynamics Timeseries Data

Noah Fleming;Benjamin Kinsella;Christopher Ing;

10.1101/078246 — Bioinformatics — Posted on 2016-09-28

44 pyMAP: a Python package for small and large scale analysis of Illumina 450k methylation platform

Amin Mahpour;

10.1101/078048 — Bioinformatics — Posted on 2016-09-29

45 pyMAP: a Python package for small and large scale analysis of Illumina 450k methylation platform

Amin Mahpour;

10.1101/078048 — Bioinformatics — Posted on 2016-09-28

46 Case study: Paralog diverged features may help reduce off-target effects of drugs

Zhining Sa;Jingqi Zou;Yangyun Zou;Xun Gu;

10.1101/078063 — Bioinformatics — Posted on 2016-09-28

47 A Pif1-dependent threshold separates DNA double-strand breaks and telomeres

Daniel Durocher;Jonathan Strecker;

10.1101/078162 — Molecular Biology — Posted on 2016-09-28

48 Evolutionary and Functional Implications of Hypervariable Loci Within the Skin Virome

Geoffrey D Hannigan;Qi Zheng;Jacquelyn S Meisel;Samuel Minot;Frederick D Bushman;Elizabeth A Grice;

10.1101/078170 — Microbiology — Posted on 2016-09-28

49 Purifying selection provides buffering of the natural variation co-expression network in a forest tree species

Niklas Mähler;Barbara K Terebieniec;Jing Wang;Pär K Ingvarsson;Nathaniel R Street;Torgeir R Hvidsten;

10.1101/078188 — Genetics — Posted on 2016-09-30

50 Purifying selection provides buffering of the natural variation co-expression network in a forest tree species

Niklas Mähler;Barbara K Terebieniec;Jing Wang;Pär K Ingvarsson;Nathaniel R Street;Torgeir R Hvidsten;

10.1101/078188 — Genetics — Posted on 2016-09-28

51 Assessing the Relationship Between Vegetation Structure and Harvestmen Assemblage in an Amazonian Upland Forest

Pio Colmenares;Fabricio B. Baccaro;Ana Lucia Tourinho;

10.1101/078220 — Ecology — Posted on 2016-09-28

52 Protein Kinase C and the stress response pathways are required for kinetochore homeostasis.

Elena Ledesma-Fernández;Eva Herrero;Guđjón Ólafsson;Peter Thorpe;

10.1101/078196 — Cell Biology — Posted on 2016-09-28

53 Unique properties of Zika NS2B-NS3pro complexes as decoded by experiments and MD simulations

Amrita Roy;Liangzhong Lim;Shagun Srivastava;Jianxing Song;

10.1101/078113 — Biophysics — Posted on 2016-09-28

54 Automated Incorporation of Pairwise Dependency in Transcription Factor Binding Site Prediction Using Dinucleotide Weight Tensors

Saeed Omidi;Erik van Nimwegen;

10.1101/078212 — Bioinformatics — Posted on 2016-09-28

55 Proper modelling of ligand binding requires an ensemble of bound and unbound states

Nicholas M Pearce;Frank von Delft;

10.1101/078147 — Biochemistry — Posted on 2016-09-28

56 Variant Set Enrichment: An R package to Identify Dis-ease-Associated Functional Genomic Regions

Musaddeque Ahmed;Richard C Sallari;Haiyang Guo;Jason H Moore;Housheng Hansen He;Mathieu Lupien;

10.1101/077990 — Bioinformatics — Posted on 2016-09-28

57 Composition fluctuations in lipid bilayers

Svetlana Baoukina;Dmitri Rozmanov;D. Peter Tieleman;

10.1101/078030 — Biophysics — Posted on 2016-09-28

58 Resting high frequency heart rate variability is not associated with the recognition of emotional facial expressions in healthy human adults.

Brice Beffara;Nicolas Vermeulen;Martial Mermillod;

10.1101/077784 — Neuroscience — Posted on 2016-09-27

59 The hemodynamic signal as a first-order low-pass temporal filter: Evidence and implications for neuroimaging studies

Antoine Sauvage;Guillaume Hubert;Jonathan Touboul;Jerome Ribot;

10.1101/077859 — Neuroscience — Posted on 2016-09-27

60 Developmental dysfunction of VIP interneurons impairs cortical circuits

Renata Batista-Brito;Martin Vinck;Katie Ferguson;David Laubender;Gyorgy Lur;Michael Higley;Jessica A Cardin;

10.1101/077891 — Neuroscience — Posted on 2016-09-27

61 Genome-wide profiling of heritable and de novo STR variations

Thomas Willems;Dina Zielinski;Assaf Gordon;Melissa Gymrek;Yaniv Erlich;

10.1101/077727 — Genomics — Posted on 2016-09-27

62 Transcriptional regulatory logic of the diurnal cycle in the mouse liver

Jonathan Aryeh Sobel;Irina Krier;Teemu Andersin;Sunil Raghav;Donatella Canella;Federica Gilardi;Alexandra Styliani Kalantzi;Guillaume Rey;Benjamin Weger;Frederic Gachon;Matteo Dal Peraro;Nouria Hernandez;Ueli Schibler;Bart Deplancke;Felix Naef;CycliX consortium;

10.1101/077818 — Genomics — Posted on 2016-09-27

63 "Same Difference": Comprehensive evaluation of three DNA methylation measurement platforms.

Thadeous J Kacmarczyk;Mame P Fall;Xihui Zhang;Yuan Xin;Yushan Li;Alicia Alonso;Doron Betel;

10.1101/077941 — Genomics — Posted on 2016-09-27

64 PCR artifact in testing for homologous recombination in genomic editing in zebrafish

Minho Won;Igor B Dawid;

10.1101/077883 — Developmental Biology — Posted on 2016-09-27

65 Interaction between distinct pools controls activity-dependent actin dynamics in the dendritic spine

Oleg O. Glebov;Juan Burrone;

10.1101/077933 — Cell Biology — Posted on 2016-09-27

66 Spatially periodic calcium profiles around single channels

Sergej Mironov;

10.1101/077909 — Biophysics — Posted on 2016-09-27

67 Data-driven identification of potential Zika virus vectors

Michelle Evans;Tad A Dallas;Barbara A Han;Courtney C Murdock;John M Drake;

10.1101/077966 — Bioinformatics — Posted on 2016-09-27

68 DNA Compass: a secure, client-side site for navigating personal genetic information

Charles Curnin;Assaf Gordon;Yaniv Erlich;

10.1101/077867 — Genomics — Posted on 2016-09-27

69 When the Good Guy Becomes the Bad Boy: Social Information Modulates the Neural, Physiological and Subjective Responses to Emotional Facial Expressions

Martial Mermillod;Delphine Grynberg;Brice Beffara;Magdalena Rychlowska;Leo Lopez;Nicolas Vermeulen;Paula Niedenthal;Sylvie Droit-Volet;

10.1101/077834 — Neuroscience — Posted on 2016-09-27

70 Change-point detection without needing to detect change-points?

Chaitanya K Ryali;Angela J Yu;

10.1101/077719 — Neuroscience — Posted on 2016-09-27

71 Human Endometrial Stromal Cells Are Highly Permissive To Productive Infection by Zika Virus

Isabel Pagani;Silvia Ghezzi;Adele Ulisse;Alicia Rubio;Filippo Turrini;Elisabetta Garavaglia;Massimo Candiani;Concetta Castilletti;Giuseppe Ippolito;Guido Poli;Vania Broccoli;Paola Panina-Bordignon;Elisa Vicenzi;

10.1101/077305 — Microbiology — Posted on 2016-09-27

72 The genetic basis and fitness consequences of sperm midpiece size in deer mice

Heidi S Fisher;Emily Jacobs-Palmer;Jean-Marc Lassance;Hopi E Hoekstra;

10.1101/077826 — Evolutionary Biology — Posted on 2016-09-27

73 Modelling the impact of curtailing antibiotic usage in food animals on antibiotic resistance in humans

Bram van Bunnik;Mark Woolhouse;

10.1101/077776 — Epidemiology — Posted on 2016-09-27

74 Prevalence of Zika virus infection in wild African primates

Connor R Buechler;Adam L Bailey;Andrea M Weiler;Gabrielle L Barry;Anna J Jasinska;Nelson B Freimer;Cristian Apetrei;Jane E Phillips-Conroy;Clifford J Jolly;Jeffrey Rogers;Thomas C Friedrich;David H O'Connor;

10.1101/077628 — Epidemiology — Posted on 2016-09-27

75 Population-level characterization of pathway alterations with SLAPenrich dissects heterogeneity of cancer hallmark acquisition

Francesco Iorio;Luz Garcia-Alonso;Jonathan Brammeld;Inigo Martincorena;David R Wille;Ultan McDermott;Julio Saez-Rodriguez;

10.1101/077701 — Bioinformatics — Posted on 2016-09-27

76 Nanopore DNA Sequencing and Genome Assembly on the International Space Station

Sarah L Castro-Wallace;Charles Y Chiu;Kristen K John;Sarah E Stahl;Kathleen H Rubins;Alexa B. R. McIntyre;Jason P Dworkin;Mark L Lupisella;David J Smith;Douglas J Botkin;Timothy A Stephenson;Sissel Juul;Daniel J Turner;Fernando Izquierdo;Scot Federman;Doug Stryke;Sneha Somasekar;Noah Alexander;Guixia Yu;Christopher Mason;Aaron S Burton;

10.1101/077651 — Genomics — Posted on 2016-09-27

77 Co-operation, competition and crowding: a discrete framework linking Allee kinetics, nonlinear diffusion, shocks and sharp-fronted travelling waves

Stuart Johnston;Ruth Baker;Sean McElwain;Matthew Simpson;

10.1101/077743 — Biophysics — Posted on 2016-09-27

78 Real-time observation of replicative helicase assembly onto single-stranded DNA

David Dulin;Zhongbo Yu;Tao Ju Cui;Bojk A Berghuis;Martin Depken;Nynke H. Dekker;

10.1101/077800 — Biophysics — Posted on 2016-09-27

79 SuperTranscript: a reference for analysis and visualization of the transcriptome

Anthony DK Hawkins;Alicia Oshlack;Nadia Davidson;

10.1101/077750 — Bioinformatics — Posted on 2016-09-27

80 Control without controllers: Towards a distributed neuroscience of executive control

Benjamin Eisenreich;Rei Akaishi;Benjamin Hayden;

10.1101/077685 — Neuroscience — Posted on 2016-09-26

81 GTPase activity-coupled treadmilling of the bacterial tubulin FtsZ organizes septal cell-wall synthesis

Xinxing Yang;Zhixin Lyu;Amanda Miguel;Ryan McQuillen;Kerwyn Kerwyn Casey Huang;Jie Xiao;

10.1101/077610 — Microbiology — Posted on 2016-09-26

82 Nuclear and structural dynamics during the establishment of a specialized effector-secreting cell by Magnaporthe oryzae in living rice cells

Emma N. Shipman;Kiersun Jones;Cory B. Jenkinson;Dong Won Kim;Jie Zhu;Chang Hyun Khang;

10.1101/077693 — Cell Biology — Posted on 2016-09-26

83 The appressorium of Magnaporthe oryzae remains mitotically active during post-penetration hyphal growth in rice cells

Kiersun Jones;Cory B Jenkinson;Jie Zhu;Sara Dorhmi;Chang Hyun Khang;

10.1101/077669 — Cell Biology — Posted on 2016-09-26

84 In−silico studies of facilitated VEGF(s) − VEGFR(s) bindings for assessment of Lysine as an indirect Low−Mol−Wt angiogen: Experimental validation of a potential synthetic Low−Mol−Wt angiogen.

PRIYANSHU VERMA;Aritri Bir;Anindita Banerjee;Joy Basu;Sujoy Kar;Sujoy Kumar Samanta;Debatosh Datta;

10.1101/077677 — Molecular Biology — Posted on 2016-09-26

85 Mechanisms for Stable Bump Activity, Winner-Take-All and Group Selection in Neuronal Spiking Networks

Yanqing Chen;

10.1101/077396 — Neuroscience — Posted on 2016-09-26

86 Treadmilling by FtsZ filaments drives peptidoglycan synthesis and bacterial cell division.

Alexandre Wilson Bisson Filho;Yen-Pang Hsu;Georgia Squyres;Erkin Kuru;Fabai Wu;Calum Jukes;Cees Dekker;Seamus Holden;Michael VanNieuwenhze;Yves Brun;Ethan Garner;

10.1101/077560 — Microbiology — Posted on 2016-09-26

87 The Opiliones Tree of Life: shedding light on harvestmen relationships through transcriptomics

Rosa Fernandez;Prashant Sharma;Ana LM Tourinho;Gonzalo Giribet;

10.1101/077594 — Evolutionary Biology — Posted on 2016-09-26

88 Managing Uncertainty in Metabolic Network Structure and Improving Predictions Using EnsembleFBA

Matthew Biggs;Jason A Papin;

10.1101/077636 — Systems Biology — Posted on 2016-09-26

89 Variational Bayesian parameter estimation techniques for the general linear model

Ludger Starke;Dirk Ostwald;

10.1101/077461 — Neuroscience — Posted on 2016-09-26

90 Synaptic vesicle glycoprotein 2C (SV2C) modulates dopamine release and is disrupted in Parkinsons disease

Amy R. Dunn;Kristen A. Stout;Minagi Ozawa;Kelly M. Lohr;Alison I. Bernstein;Yingjie Li;Minzheng Wang;Carmelo Sgobio;Namratha Sastry;Huaibin Cai;W. Michael Caudle;Gary W. Miller;

10.1101/077586 — Neuroscience — Posted on 2016-09-26

91 A pyrethroid-treated bed net increases host attractiveness for Anopheles gambiae s.s carrying the kdr allele in a dual choice olfactometer

Angelique Porciani;Malal Mamadou Diop;Nicolas Moiroux;Tatiana Kadoke-Lambi;Anna Cohuet;Fabrice Chandre;Laurent Dormont;Cedric Pennetier;

10.1101/077552 — Ecology — Posted on 2016-09-26

92 Logistic proliferation of cells in scratch assays is delayed

Wang Jin;Esha T Shah;Catherine J Penington;Scott W McCue;Philip K Maini;Matthew J Simpson;

10.1101/077388 — Biophysics — Posted on 2016-09-26

93 Contribution of de novo non-coding mutations to autism and identification of risk genes from whole-genome sequencing of affected families

Yuwen Liu;A. Ercument Cicek;Yanyu Liang;Jinchen Li;Rebecca A Muhle;Nicholas Knoblauch;Martina Krenzer;Yue Mei;Yan Wang;Yi Jiang;Even Geller;Zhongshan Li;Iuliana Ionita-Laza;Jinyu Wu;Kun Xia;James P Noonan;Zhong Sheng Sun;Xin He;

10.1101/077578 — Genetics — Posted on 2016-09-26

94 Scrounging by foragers can resolve the paradox of enrichment

Wataru Toyokawa;

10.1101/077537 — Ecology — Posted on 2016-09-26

95 An Electrochemistry Study of Cryoelectrolysis in Frozen Physiological Saline

Thomas J. Manuel;Pujita Munnangi;Boris Rubinsky;

10.1101/077545 — Bioengineering — Posted on 2016-09-26

96 A fast multi-locus random-SNP-effect EMMA for genome-wide association studies

Yang-Jun Wen;Hanwen Zhang;Jin Zhang;Jian-Ying Feng;Bo Huang;Jim M. Dunwell;Yuan-Ming Zhang;Rongling Wu;

10.1101/077404 — Genetics — Posted on 2016-09-26

97 The Mstncmpt-Dl1abc mutation impairs secretion of promyostatin

Viktor Vasarhelyi;Maria Trexler;Laszlo Patthy;

10.1101/077412 — Molecular Biology — Posted on 2016-09-26

98 ImSig: A resource for the identification and quantification of immune signatures in blood and tissue transcriptomics data

Ajit Johnson Nirmal;Tim Regan;Barbara Bo-Ju Shih;David Arthur Hume;Andrew Harvey Sims;Tom Charles Freeman;

10.1101/077487 — Immunology — Posted on 2016-09-26

99 Co-estimation of Phylogeny-aware Alignment and Phylogenetic Tree

Chunxiang Li;Alan Medlar;Ari Löytynoja;

10.1101/077503 — Bioinformatics — Posted on 2016-09-26

100 Glutton: large-scale integration of non-model organism transcriptome data for comparative analysis

Alan Medlar;Laura Laakso;Andreia Miraldo;Ari Löytynoja;

10.1101/077511 — Bioinformatics — Posted on 2016-09-26

101 Brain oscillations and connectivity in autism spectrum disorders (ASD): new approaches to methodology, measurement and modelling

Klaus Kessler;Robert Al Seymour;Gina Rippon;

10.1101/077263 — Neuroscience — Posted on 2016-09-26

102 Flow environment and matrix structure interact to determine spatial competition in Pseudomonas aeruginosa biofilms

Carey Nadell;Deirdre Ricaurte;Jing Yan;Knut Drescher;Bonnie Bassler;

10.1101/077354 — Microbiology — Posted on 2016-09-25

103 Learning of speech categories in humans and Zebra finches

Dimitrios Botskaris;Pralle Kriengwatana;Carel ten Cate;

10.1101/077321 — Animal Behavior and Cognition — Posted on 2016-09-25

104 Stomatal and physiological response of contrasting Z. mauritiana (Lamk.) clones to water stress.

Manoj Kulkarni;

10.1101/077297 — Plant Biology — Posted on 2016-09-25

105 Multidimensional stimulus-response correlation reveals supramodal neural responses to naturalistic stimuli

Jacek Dmochowski;Jason Ki;Paul De Guzman;Paul Sajda;Lucas C Parra;

10.1101/077230 — Neuroscience — Posted on 2016-09-26

106 Multidimensional stimulus-response correlation reveals supramodal neural responses to naturalistic stimuli

Jacek Dmochowski;Jason Ki;Paul De Guzman;Paul Sajda;Lucas C Parra;

10.1101/077230 — Neuroscience — Posted on 2016-09-25

107 Traumatic brain injury causes retention of long introns in metabolic genes via regulation of intronic Histone 3 lysine 36 methylation levels in the sub-acute phase of injury

Arko Sen;Wen Wu;Oluwademi Okikiolu Nuga;Jenny Liu;Rayanne Burl;Katherine Gurdziel;Roger Pique-Regi;Maik Hüttemann;Douglas M Ruden;

10.1101/077214 — Neuroscience — Posted on 2016-09-25

108 Error rates, PCR recombination, and sampling depth in HIV-1 Whole Genome Deep Sequencing

Fabio Zanini;Johanna Brodin;Jan Albert;Richard Neher;

10.1101/077313 — Genomics — Posted on 2016-09-25

109 Cassava HapMap: Managing genetic load in a clonal crop species

Punna Ramu;Williams Esuma;Robert Kawuki;Ismail Y Rabbi;Chiedozie Egesi;Jessen V Bredeson;Rebecca S S Bart;Verma;Edward S Buckler;Fei Lu;

10.1101/077123 — Genetics — Posted on 2016-09-25

110 Insights into the genetic epidemiology of Crohn’s and rare diseases in the Ashkenazi Jewish population

Manuel Antonio Rivas;Jukka Koskela;Hailiang Huang;Christine Stevens;Brandon E Avila;Talin Haritunians;Benjamin Neale;Mitja Kurki;Andrea Ganna;Daniel Graham;Benjamin Glaser;Inga Peter;Gil Atzmon;Nir Barzilai;Adam Levine;Elena Schiff;Nikolas Pontikos;Ben Weisburd;Konrad J Karczewski;Eric Minikel;Britt-Sabina Petersen;Laurent Beaugerie;Philippe Seksik;Jacques Cosnes;Stefan Schreiber;Bernd Bokemeyer;Johannes Bethge;NIDDK IBD Genetics consortium;T2D-GENES consortium;Graham Heap;Tariq Ahmad;Vincent Plagnol;Anthony W Segal;Stephan Targan;Dan Turner;Paivi Saavalainen;Martti Farkkila;Kimmo Kontula;Matt

10.1101/077180 — Genetics — Posted on 2016-09-25

111 Lessons learned from comparing molecular dynamics engines on the SAMPL5 dataset

Michael R. Shirts;Christoph Klein;Jason M. Swails;Jian Yin;Michael K. Gilson;David L. Mobley;David A. Case;Ellen D. Zhong;

10.1101/077248 — Biophysics — Posted on 2016-09-25

112 RIblast: An ultrafast RNA-RNA interaction prediction system for comprehensive lncRNA interaction analysis

Tsukasa Fukunaga;Michiaki Hamada;

10.1101/077271 — Bioinformatics — Posted on 2016-09-25

113 Reproductive biology of three Ziziphus species (Rhamnaceae)

Manoj Kulkarni;

10.1101/077289 — Plant Biology — Posted on 2016-09-25

114 Fixing the stimulus-as-fixed-effect fallacy in task fMRI

Jacob Westfall;Thomas Nichols;Tal Yarkoni;

10.1101/077131 — Neuroscience — Posted on 2016-09-25

115 Time to wake up: Studying neurovascular coupling and brain-wide circuit function in the un-anesthetized animal

Yu-Rong Gao;Yuncong Ma;Qingguang Zhang;Aaron T Winder;Zhifeng Liang;Lilith Antinori;Patrick J Drew;Nanyin Zhang;

10.1101/077024 — Neuroscience — Posted on 2016-09-25

116 Identifying Conserved Genomic Elements and Designing Universal Probe Sets To Enrich Them

Brant C Faircloth;

10.1101/077172 — Genomics — Posted on 2016-09-25

117 Enrich2: a statistical framework for analyzing deep mutational scanning data

Alan F Rubin;Nathan Lucas;Sandra M Bajjalieh;Anthony T Papenfuss;Terence P Speed;Douglas M Fowler;

10.1101/075150 — Bioinformatics — Posted on 2016-09-25

118 Mapping protein function with CRISPR/Cas9-mediated mutagenesis

Katherine F Donovan;Mudra Hegde;Meagan Sullender;Emma W Vaimberg;Cory M Johannessen;David E Root;John G Doench;

10.1101/076919 — Genomics — Posted on 2016-09-23

119 Host-induced gene silencing compromises Verticillium wilt in tomato and Arabidopsis

Yin Song;Bart Thomma;

10.1101/076976 — Plant Biology — Posted on 2016-09-23

120 Harnessing Big Data for Systems Pharmacology

Lei Xie;Eli Draizen;Philip Bourne;

10.1101/077115 — Pharmacology and Toxicology — Posted on 2016-09-23

121 Genomic analyses for age at menarche identify 389 independent signals and indicate BMI-independent effects of puberty timing on cancer susceptibility

Felix Day;Deborah Thompson;Hannes Helgason;Daniel Chasman;Hilary Finucane;Patrick Sulem;Katherine Ruth;Sean Whalen;Abhishek Sarkar;Eva Albrecht;Elisabeth Altmaier;Marzyeh Amini;Caterina Barbieri;Thibaud Boutin;Archie Campbell;Ellen Demerath;Ayush Giri;Chunyan He;Jouke Hottenga;Robert Karlsson;Ivana Kolcic;Po-Ru Loh;Kathryn Lunetta;Massimo Mangino;Brumat Marco;Gerorge McMahon;Sarah Medland;Ilja Nolte;Raymond Noordam;Teresa Nutile;Lavinia Paternoster;Natalia Perjakova;Eleonora Porcu;Lynda Rose;Katharina Schraut;Ayellet Segre;Albert Smith;Lisette Stolk;Alexander Teumer;Irene Andrulis;Stefania Ban

10.1101/076794 — Genomics — Posted on 2016-09-23

122 Detecting large-scale networks in the human brain using high-density electroencephalography

Quanying Liu;Seyedehrezvan Farahibozorg;Camillo Porcaro;Nicole Wenderoth;Dante Mantini;

10.1101/077107 — Neuroscience — Posted on 2016-09-23

123 Biophysical Attributes of CpG Presentation Control TLR9 Signaling to Differentially Polarize Systemic Immune-Responses

Jardin A Leleux;Pallab Pradhan;Krishnendu Roy;

10.1101/076935 — Immunology — Posted on 2016-09-23

124 Global changes in patterning, splicing and primate specific lncRNAs in autism brain

Neelroop N Parikshak;Vivek Swarup;T Grant Belgard;Michael J Gandal;Manuel Irimia;Virpi Leppa;Jennifer K Lowe;Robert Johnson;Benjamin J. Blencowe;Steve Horvath;Daniel H. Geschwind;

10.1101/077057 — — Posted on 2016-09-25

125 Global changes in patterning, splicing and primate specific lncRNAs in autism brain

Neelroop N Parikshak;Vivek Swarup;T Grant Belgard;Michael J Gandal;Manuel Irimia;Virpi Leppa;Jennifer K Lowe;Robert Johnson;Benjamin J. Blencowe;Steve Horvath;Daniel H. Geschwind;

10.1101/077057 — — Posted on 2016-09-23

126 Knock-In of a 25-Kilobase Pair BAC-Derived Donor Molecule by Traditional and CRISPR/Cas9-Stimulated Homologous Recombination

Tiffany Leidy-Davis;Kai Cheng;Leslie Goodwin;Judith Morgan;Wen Chun Juan;Xavier Roca;Sin-Tiong Ong;David Bergstrom;

10.1101/076612 — Genetics — Posted on 2016-09-23

127 A structural variant in the 5′-flanking region of the TWIST2 gene affects melanocyte development in belted cattle

Niveditha Awasthi Mishra;Cord Drögemüller;Vidhya Jagannathan;Rémy Bruggmann;Julia Beck;Ekkehard Schütz;Bertram Brenig;Steffi Demmel;Simon Moser;Heidi Signer-Hasler;Aldona Pieńkowska-Schelling;Claude Schelling;Ronald Rongen;Stefan Rieder;Robert N. Kelsh;Nadia Mercader;Tosso Leeb;

10.1101/077065 — Genetics — Posted on 2016-09-23

128 Identifying the Species Threat Hotspots from Global Supply Chains

Daniel D Moran;Keiichiro Kanemoto;

10.1101/076869 — Ecology — Posted on 2016-09-23

129 Zipper plot: visualizing transcriptional activity of genomic regions

Francisco Avila Cobos;Jasper Anckaert;Pieter-Jan Volders;Dries Rombaut;Jo Vandesompele;Katleen De Preter;Pieter Mestdagh;

10.1101/077073 — Bioinformatics — Posted on 2016-09-23

130 The Identification of a 1916 Irish Rebel: New Approach for Estimating Relatedness From Low Coverage Homozygous Genomes

Daniel M Fernandes;Kendra Sirak;Mario Novak;John Finarelli;John Byrne;Edward Connolly;Jeanette Carlsson;Edmondo Ferretti;Ron Pinhasi;Jens Carlsson;

10.1101/076992 — Bioinformatics — Posted on 2016-09-24

131 The Identification of a 1916 Irish Rebel: New Approach for Estimating Relatedness From Low Coverage Homozygous Genomes

Daniel M Fernandes;Kendra Sirak;Mario Novak;John Finarelli;John Byrne;Edward Connolly;Jeanette Carlsson;Edmondo Ferretti;Ron Pinhasi;Jens Carlsson;

10.1101/076992 — Bioinformatics — Posted on 2016-09-23

132 Neuroprotective strategies for NMDAR-mediated excitotoxicity in Huntington’s Disease

Kimberly Dayle Girling;Yu Tian Wang;

10.1101/076885 — Neuroscience — Posted on 2016-09-23

133 Comparative analysis of 2D and 3D distance measurements to study spatial genome organization

Elizabeth Finn;Gianluca Pegoraro;Sigal Shachar;Tom Misteli;

10.1101/076893 — Cell Biology — Posted on 2016-09-23

134 NODDI-DTI: extracting neurite orientation and dispersion parameters from a diffusion tensor

Luke J Edwards;Kerrin J Pine;Nikolaus Weiskopf;Siawoosh Mohammadi;

10.1101/077099 — Biophysics — Posted on 2016-09-23

135 Genetic indicators of drug resistance in the highly repetitive genomes of Trichomonas vaginalis and other trichomonads

Martina Bradic;Sally D. Warring;Grace E. Tooley;Paul Scheid;William E. Secor;Kirkwood M. Land;Po-Jung Huang;Ting-Wen Chen;Chi-Ching Lee;Petrus Tang;Steven A. Sullivan;Jane M. Carlton;

10.1101/076729 — Genomics — Posted on 2016-09-22

136 SiLiCO: A Simulator of Long Read Sequencing in PacBio and Oxford Nanopore

Ethan Alexander Garcia Baker;Sara Goodwin;W. Richard McCombie;Olivia Mendivil Ramos;

10.1101/076901 — Genomics — Posted on 2016-09-22

137 Choice of reference genome can introduce massive bias in bisulfite sequencing data

Phillip Wulfridge;Ben Langmead;Andrew P Feinberg;Kasper Hansen;

10.1101/076844 — Genomics — Posted on 2016-09-22

138 Widespread allelic heterogeneity in complex traits

Farhad Hormozdiari;Anthony Zhu;Gleb Kichaev;Ayellet V. Segre;Chelsea J.-T. Ju;Jong Wha Joo;Hyejung Won;Sriram Sankararaman;Bogdan Pasaniuc;Sagiv Shiffman;Eleazar Eskin;

10.1101/076984 — Genetics — Posted on 2016-09-22

139 PEMapper / PECaller: A simplified approach to whole-genome sequencing

Henry Richard Johnston;Pankaj Chopra;Thomas Wingo;Viren Patel;Internation Consortium on Brain and Behavior in 22;Michael Epstein;Jennifer Mulle;Stephen Warren;Michael Zwick;David J Cutler;

10.1101/076968 — Genetics — Posted on 2016-09-22

140 dbOTU3: A new implementation of distribution-based OTU calling

Scott W Olesen;Claire Duvallet;Eric J Alm;

10.1101/076927 — Bioinformatics — Posted on 2016-09-22

141 Repeated divergent selection on pigmentation genes in a rapid finch radiation driven by sexual selection

Leonardo Campagna;Márcio Repenning;Luis Fabio Silveira;Carla Suertegaray Fontana;Pablo L Tubaro;Irby J Lovette;

10.1101/075713 — Evolutionary Biology — Posted on 2016-09-27

142 Repeated divergent selection on pigmentation genes in a rapid finch radiation driven by sexual selection

Leonardo Campagna;Márcio Repenning;Luis Fabio Silveira;Carla Suertegaray Fontana;Pablo L Tubaro;Irby J Lovette;

10.1101/075713 — Evolutionary Biology — Posted on 2016-09-22

143 Using RNA-seq for genomic scaffold placement, correcting assemblies, and genetic map creation in a common Brassica rapa mapping population.

RJ Cody Markelz;Michael F Covington;Marcus T Brock;Upendra K Devisetty;Daniel J Kliebenstein;Cynthia Weinig;Julin N Maloof;

10.1101/076745 — Genomics — Posted on 2016-09-22

144 Inferring recent demography from isolation by distance of long shared sequence blocks

Harald Ringbauer;Graham Coop;Nick Hamilton Barton;

10.1101/076810 — Genetics — Posted on 2016-09-23

145 Inferring recent demography from isolation by distance of long shared sequence blocks

Harald Ringbauer;Graham Coop;Nick Hamilton Barton;

10.1101/076810 — Genetics — Posted on 2016-09-22

146 Larger Numbers can Impede Adaptation in Microbial Populations despite Entailing Greater Genetic Variation

Yashraj D. Chavhan;Sayyad Irfan Ali;Sutirth Dey;

10.1101/076760 — Evolutionary Biology — Posted on 2016-09-22

147 EARLY INFLAMMATION, IMMUNOPATHOLOGY AND AGING

Imroze Khan;Deepa Agashe;Jens Rolff;

10.1101/076828 — Evolutionary Biology — Posted on 2016-09-22

148 Insights into the binding mode of MEK type-III inhibitors. A step towards discovering and designing allosteric kinase inhibitors across the human kinome

Zheng Zhao;Lei Xie;Philip E. Bourne;

10.1101/076711 — Pharmacology and Toxicology — Posted on 2016-09-22

149 A Whole-Brain Computational Modeling Approach to Explain the Alterations in Resting-State Functional Connectivity during Progression of Alzheimers Disease

Murat Demirtas;Carles Falcon;Juan Domingo Gispert Lopez;Alan Tucholka;Jose Luis Molinuevo;Gustavo Deco;

10.1101/076851 — Neuroscience — Posted on 2016-09-22

150 Contrasting genome dynamics between domesticated and wild yeasts

Jia-Xing Yue;Jing Li;Louise Aigrain;Johan Hallin;Karl Persson;Karen Oliver;Anders Bergström;Paul Coupland;Jonas Warringer;Marco Cosentino Lagomarsino;Gilles Fischer;Richard Durbin;Gianni Liti;

10.1101/076562 — Genomics — Posted on 2016-09-24

151 Contrasting genome dynamics between domesticated and wild yeasts

Jia-Xing Yue;Jing Li;Louise Aigrain;Johan Hallin;Karl Persson;Karen Oliver;Anders Bergström;Paul Coupland;Jonas Warringer;Marco Cosentino Lagomarsino;Gilles Fischer;Richard Durbin;Gianni Liti;

10.1101/076562 — Genomics — Posted on 2016-09-22

152 Fast genome-wide functional annotation through orthology assignment by eggNOG-mapper

Jaime Huerta-Cepas;Kristoffer Forslund;Damian Szklarczyk;Lars Juhl Jensen;Christian von Mering;Peer Bork;

10.1101/076331 — Genomics — Posted on 2016-09-22

153 Dynamic forecasting of Zika epidemics using Google Trends

Yue Teng;Dehua Bi;Guigang Xie;Yuan Jin;Baihan Lin;Dan Feng;

10.1101/076521 — Epidemiology — Posted on 2016-09-22

154 Remote effect of Insecticide-treated nets and the personal protection against malaria mosquito bites

Nicolas Moiroux;Fabrice Chandre;Jean-Marc Hougard;Vincent Corbel;Cedric Pennetier;

10.1101/073718 — Epidemiology — Posted on 2016-09-22

155 Temporal probabilistic modeling of bacterial compositions derived from 16S rRNA sequencing

Tarmo Aijo;Christian Lorenz Mueller;Richard Bonneau;

10.1101/076836 — Ecology — Posted on 2016-09-22

156 Laurdan and di-4-ANEPPDHQ probe different properties of the membrane

Mariana Amaro;Francesco Reina;Martin Hof;Christian Eggeling;Erdinc Sezgin;

10.1101/076752 — Biophysics — Posted on 2016-09-22

157 A global perspective of codon usage

Bohdan Khomtchouk;Claes Wahlestedt;Wolfgang Nonner;

10.1101/076679 — Genetics — Posted on 2016-09-21

158 PDGF signaling directs cardiomyocyte movement toward the midline during heart tube assembly

Joshua Bloomekatz;Reena Singh;Owen W.J. Prall;Ariel C. Dunn;Megan Vaughan;Chin-San Loo;Richard P. Harvey;Deborah Yelon;

10.1101/076703 — Developmental Biology — Posted on 2016-09-21

159 Histone deacetylase inhibitors correct the cholesterol storage defect in most NPC1 mutant cells

Nina H Pipalia;Kanagaraj Subramanian;Shu Mao;William E Balch;Frederick R Maxfield;

10.1101/076695 — Cell Biology — Posted on 2016-09-23

160 Histone deacetylase inhibitors correct the cholesterol storage defect in most NPC1 mutant cells

Nina H Pipalia;Kanagaraj Subramanian;Shu Mao;William E Balch;Frederick R Maxfield;

10.1101/076695 — Cell Biology — Posted on 2016-09-21

161 Polymer physics of nuclear organization and function

Assaf Amitai;David Holcman;

10.1101/076661 — Biophysics — Posted on 2016-09-21

162 Cortical correlates of the auditory frequency-following and onset responses: EEG and fMRI evidence

Emily BJ Coffey;Gabriella Musacchia;Robert J Zatorre;

10.1101/076448 — Neuroscience — Posted on 2016-09-21

163 Nuclear pore-like structures in a compartmentalized bacterium

Evgeny Sagulenko;Amanda Nouwens;Richard I Webb;Kathryn Green;Benjamin Yee;Gary Morgan;Andrew Leis;Kuo-Chang Lee;Margaret K Butler;Nicholas Chia;Uyen Thi Phuong Pham;Stinus Lindgreen;Ryan Catchpole;Anthony M Poole;John A. Fuerst;

10.1101/076430 — Microbiology — Posted on 2016-09-21

164 Whole genome sequence analysis of Salmonella Typhi isolated in Thailand before and after the introduction of a national immunization program

Zoe Anne Dyson;Duy Pham Thanh;Ladaporn Bodhidatta;Carl Jeffries Mason;Apichai Srijan;Maia A Rabaa;Phat Voong Vinh;Tuyen Ha Thanh;Guy E Thwaites;Stephen Baker;Kathryn Holt;

10.1101/076422 — Genomics — Posted on 2016-09-21

165 Shared genetics and couple-associated environment are major contributors to the risk of both clinical and self-declared depression

Yanni Zeng;Pau Navarro;Charley Xia;Carmen Amador;Ana M Fernandez-Pujals;Pippa A. Thomson;Archie Campbell;Reka Nagy;Toni Kim Clarke;Jonathan D. Hafferty;Blair H. Smith;Lynne J. Hocking;Sandosh Padmanabhan;Caroline Hayward;Donald J MacIntyre;David J Porteous;Chris S. Haley;Andrew M. McIntosh;

10.1101/076398 — Genetics — Posted on 2016-09-21

166 GWAS for serum galactose-deficient IgA1 implicates critical genes of the O-glycosylation pathway

Krzysztof Kiryluk;Yifu Li;Zina Moldoveanu;Hitoshi Suzuki;Colin Reily;Ping Hou;Jingyuan Xie;Nikol Mladkova;Sindhuri Prakash;Clara Fischman;Samantha Shapiro;Robert A. LeDesma;Drew Bradbury;Iuliana Ionita-Laza;Frank Eitner;Thomas Rauen;Nicolas Maillard;Francois Berthoux;Jurgen Floege;Nan Chen;Hong Zhang;Francesco Scolari;Robert J. Wyatt;Bruce A. Julian;Ali G. Gharavi;Jan Novak;

10.1101/076414 — Genetics — Posted on 2016-09-21

167 Intraspecific variation shapes community-level behavioural responses to urbanisation in spiders: from traits to function

Maxime Dahirel;Jasper Dierick;Maarten De Cock;Dries Bonte;

10.1101/076497 — Ecology — Posted on 2016-09-21

168 Diverse roles of guanine nucleotide exchange factors in regulating collective cell migration

Assaf M Zaritsky;Yun-Yu Tseng;Angeles M. Rabadan;Michael Overholtzer;Gaudenz Danuser;Alan Hall;

10.1101/076125 — Cell Biology — Posted on 2016-09-21

169 Temporal regulation of epithelium formation

Stephen E Von Stetina;Jennifer J. Liang;Georgios Marnellos;Susan E Mango;

10.1101/076570 — Cell Biology — Posted on 2016-09-21

170 ATP homeostasis underlies optimal glucose consumption by Saccharomyces cerevisiae

Kulika Chomvong;Daniel Benjamin;Dan Nomura;Jamie Cate;

10.1101/076364 — Systems Biology — Posted on 2016-09-21

171 Frontal cortex function derives from hierarchical predictive coding

William H Alexander;Joshua W Brown;

10.1101/076505 — Neuroscience — Posted on 2016-09-21

172 Reading positional codes with fMRI: Problems and solutions

Kristjan Kalm;Dennis Norris;

10.1101/076554 — Neuroscience — Posted on 2016-09-21

173 Neural correlates of early sound encoding and their relationship to speech in noise perception

Emily BJ Coffey;Alexander Chepesiuk;Sibylle Herholz;Sylvain Baillet;Robert J Zatorre;

10.1101/076455 — Neuroscience — Posted on 2016-09-21

174 The tubulin repertoire of C. elegans sensory neurons and its context dependent role in process outgrowth

Dean Lockhead;Erich M Schwarz;Robert O'Hagan;Sebastian Bellotti;Michael Krieg;Maureen Barr;Alexander R Dunn;Paul W. Sternberg;Miriam B Goodman;

10.1101/075879 — Neuroscience — Posted on 2016-09-21

175 How prior knowledge prepares perception: Prestimulus oscillations carry perceptual expectations and influence early visual responses.

Jason Samaha;Bastien Boutonnet;Gary Lupyan;

10.1101/076687 — Neuroscience — Posted on 2016-09-21

176 Parasitic Infection by Pseudocapillaria tomentosa is Associated with a Longitudinal Restructuring of the Zebrafish Gut Microbiome

Christopher A Gaulke;Maurício L Martins;Virginia Watral;Michael L Kent;Thomas J Sharpton;

10.1101/076596 — Microbiology — Posted on 2016-09-21

177 Seasonal influenza circulation patterns and projections for 2016-2017

Trevor Bedford;Richard Neher;

10.1101/076638 — Evolutionary Biology — Posted on 2016-09-21

178 ATX-2, the C. elegans Ortholog of Human Ataxin-2, Regulates Centrosome Size and Microtubule Dynamics

Michael Stubenvoll;Jeffrey Medley;Miranda Irwin;Mi Hye Song;

10.1101/076604 — Cell Biology — Posted on 2016-09-21

179 In vitro profiling of endocrine cell death using UCHL1 and GAD65 as soluble biomarkers

Benedicte Brackeva;Sarah Roels;Geert Stange;Gamze Ates;Olivier Costa;Zhidong Ling;Frans Gorus;Geert A. Martens;

10.1101/076513 — Cell Biology — Posted on 2016-09-21

180 Excitable RhoA dynamics drive pulsed contractions in the early C. elegans embryo.

François B Robin;Jonathan B Michaux;William M McFadden;Edwin M Munro;

10.1101/076356 — Cell Biology — Posted on 2016-09-21

181 Alternative splicing changes as drivers of cancer

Hector Climente-Gonzalez;Eduard Porta-Pardo;Adam Godzik;Eduardo Eyras;

10.1101/076653 — — Posted on 2016-09-21

182 Performance Evaluation of Empirical Mode Decomposition Algorithms for Mental Task Classification

Akshansh Gupta;Dhirendra Kumar;Anirban Chakraborti;Kiran Sharma;

10.1101/076646 — Bioinformatics — Posted on 2016-09-21

183 Data aggregation at the level of molecular pathways improves stability of experimental transcriptomic and proteomic data

Nicolas Borisov;Maria Suntsova;Andrew Garazha;Ksenia Lezhnina;Olga Kovalchuk;Alexander Aliper;Elena Ilnitskaya;Maxim Sorokin;Mihkail Korzinkin;Vyacheslav Saenko;Yury Saenko;Dmitry G. Sokov;Nurshat M. Gaifullin;Kirill Kashintsev;Valery Shirokorad;Irina Shabalina;Alex Zhavoronkov;Bhubaneswar Mishra;Charles R. Cantor;Anton Buzdin;

10.1101/076620 — Bioinformatics — Posted on 2016-09-21

184 Probabilistic inference of bifurcations in single-cell data using a hierarchical mixture of factor analysers

Kieran Campbell;Christopher Yau;

10.1101/076547 — Bioinformatics — Posted on 2016-09-21

185 shinyheatmap: ultra fast low memory heatmap software for big data genomics

Bohdan Khomtchouk;Claes Wahlestedt;

10.1101/076463 — Bioinformatics — Posted on 2016-09-21

186 Extraction of ultrashort DNA molecules from herbarium specimens

Rafal M Gutaker;Ella Reiter;Anja Furtwängler;Verena J Schuenemann;Hernán A Burbano;

10.1101/076299 — Genomics — Posted on 2016-09-20

187 Deep-time parallel evolution of myrmecoid syndrome in rove beetle symbionts of army ants

Munetoshi Maruyama;Joseph Parker;

10.1101/076315 — Evolutionary Biology — Posted on 2016-09-20

188 A comprehensive evaluation of multiband-accelerated sequences and their effects on statistical outcome measures in fMRI.

Lysia Demetriou;Oliwia S Kowalczyk;Gabriella Tyson;Thomas Bello;Rexford D Newbould;Matthew B Wall;

10.1101/076307 — Neuroscience — Posted on 2016-09-20

189 The RNA-binding protein RBP10 controls a regulatory cascade that defines bloodstream-form trypanosome identity

Elisha Mugo;Christine Clayton;

10.1101/076273 — Molecular Biology — Posted on 2016-09-20

190 The RNA-binding protein RBP10 controls a regulatory cascade that defines bloodstream-form trypanosome identity

Elisha Mugo;Christine Clayton;

10.1101/076273 — Molecular Biology — Posted on 2016-09-20

191 A critical review of the use and performance of different function types for modeling temperature-dependent development of arthropod larvae

Brady K. Quinn;

10.1101/076182 — Zoology — Posted on 2016-09-20

192 Adipocyte JAK2 mediates hepatic insulin sensitivity and the diabetogenic action of Growth Hormone

Kevin Corbit;Joao Paulo G. Camporez;Jennifer L Tran;Camella G Wilson;Rachel J Perry;Gerald Schulman;Michael J Jurczak;Ethan Weiss;

10.1101/076265 — Physiology — Posted on 2016-09-20

193 Heterozygous mutation to Chd8 causes macrocephaly and widespread alteration of neurodevelopmental transcriptional networks in mouse

Andrea L Gompers;Linda Su-Feher;Jacob Ellegood;Tyler W Stradleigh;Iva Zdilar;Nycole A Copping;Michael C Pride;Melanie D Schaffler;M Asrafuzzaman Riyadh;Gaurav Kaushik;Brandon Mannion;Ingrid Plajzer-Frick;Veena Afzal;Axel Visel;Len A Pennacchio;Diane Dickel;Jason P Lerch;Jacqueline N Crawley;Konstantinos S Zarbalis;Jill L Silverman;Alex S Nord;

10.1101/076158 — Neuroscience — Posted on 2016-09-20

194 Using MinION nanopore sequencing to generate a de novo eukaryotic draft genome: preliminary physiological and genomic description of the extremophilic red alga Galdieria sulphuraria strain SAG 107.79

Amanda M. Davis;Manuela Iovinella;Sally James;Thomas Robshaw;Jennifer H. Dodson;Lorenzo Herrero-Davila;James H. Clark;Maria Agapiou;Simon McQueen-Mason;Gabriele Pinto;Claudia Ciniglia;James P. J. Chong;Peter D Ashton;Seth Jon Davis;

10.1101/076208 — Genomics — Posted on 2016-09-20

195 Pre-metazoan origin of animal miRNAs

Jon Brate;Ralf Stefan Neumann;Bastian Fromm;Arthur Alexander Blorstad Haraldsen;Paul Grini;Kamran Shalchian-Tabrizi;

10.1101/076190 — Evolutionary Biology — Posted on 2016-09-28

196 Pre-metazoan origin of animal miRNAs

Jon Brate;Ralf Stefan Neumann;Bastian Fromm;Arthur Alexander Blorstad Haraldsen;Paul Grini;Kamran Shalchian-Tabrizi;

10.1101/076190 — Evolutionary Biology — Posted on 2016-09-20

197 Competition between IAV subtypes through heterosubtypic immunity modulates re-infection and antibody dynamics in the mallard reservoir

Neus Latorre-Margalef;Justin D. Brown;Alinde Fojtik;Rebecca L. Poulson;Deborah Carter;Monique Franca;David E. Stallknecht;

10.1101/063933 — Ecology — Posted on 2016-09-20

198 DynOmics to identify delays and co-expression patterns across time course experiments

Jasmin Straube;Bevan Emma Huang;Kim-Anh Le Cao;

10.1101/076257 — Bioinformatics — Posted on 2016-09-20

199 Translational control of gurken mRNA in Drosophila development

Christopher J Derrick;Timothy T Weil;

10.1101/076091 — Cell Biology — Posted on 2016-09-20

200 Tracking single-cell gene regulation in dynamically controlled environments using an integrated microfluidic and computational setup

Matthias Kaiser;Florian Jug;Olin Silander;Siddharth Deshpande;Thomas Pfohl;Thomas Julou;Gene Myers;Erik van Nimwegen;

10.1101/076224 — Systems Biology — Posted on 2016-09-20

201 Transformation of head-direction signal into spatial code

Adrien Peyrache;Lisa Roux;Natalie Schieferstein;Gyorgy Buzsaki;

10.1101/075986 — Neuroscience — Posted on 2016-09-28

202 Transformation of head-direction signal into spatial code

Adrien Peyrache;Lisa Roux;Natalie Schieferstein;Gyorgy Buzsaki;

10.1101/075986 — Neuroscience — Posted on 2016-09-20

203 Language-selective brain regions track linguistic input more closely than domain-general regions

Idan A Blank;Evelina Fedorenko;

10.1101/076240 — Neuroscience — Posted on 2016-09-20

204 The Melting Snowball: A Test of the Snowball Model Using RNA

Ata Kalirad;Ricardo B. R. Azevedo;

10.1101/076232 — Evolutionary Biology — Posted on 2016-09-20

205 The Melting Snowball: A Test of the Snowball Model Using RNA

Ata Kalirad;Ricardo B. R. Azevedo;

10.1101/076232 — Evolutionary Biology — Posted on 2016-09-20

206 Genome-wide association study of HIV whole genome sequences validated using drug resistance

Robert A Power;Siva Davaniah;Anne Derache;Eduan Wilkinson;Frank Tanser;Ravindra K Gupta;Deenan Pillay;Tulio de Oliveira;

10.1101/076216 — Genomics — Posted on 2016-09-20

207 Expression biomarkers used for the selective breeding of complex polygenic traits

Marta Guarna;Shelley Hoover;Elizabeth Huxter;Heather Higo;Kyung-Mee Moon;Domonik Domanski;Miriam E.F. Bixby;Andony P Melathopoulos;Abdullah Ibrahim;Michael Peirson;Suresh Desai;Derek Micholson;Rick White;Christoph H Borchers;Robert W Currie;Stephen F Pernal;Leonard Foster;

10.1101/076174 — Zoology — Posted on 2016-09-19

208 Correcting subtle stratification in summary association statistics

Gaurav Bhatia;Nicholas A Furlotte;Po-Ru Loh;Xuanyao Liu;Hilary Kiyo Finucane;Alexander Gusev;Alkes Price;

10.1101/076133 — Genetics — Posted on 2016-09-19

209 Diffusion of lipids and GPI-anchored proteins in actin-free plasma membrane vesicles measured by STED-FCS

Falk Schneider;Mathias P Clausen;Dominic Waithe;Thomas Koller;Gunes Ozhan;Christian Eggeling;Erdinc Sezgin;

10.1101/076109 — Biophysics — Posted on 2016-09-19

210 De novo transcriptome assembly for the spiny mouse (Acomys cahirinus)

Jared Mamrot;Roxane Legaie;Stacey J Ellery;Trevor Wilson;David Gardner;David W Walker;Peter Temple-Smith;Anthony T Papenfuss;Hayley Dickinson;

10.1101/076067 — Bioinformatics — Posted on 2016-09-19

211 Towards an Open Data Framework for Body Sensor Networks Supporting Bluetooth Low Energy

Ninoshka K. Singh;Darrell O Ricke;

10.1101/076166 — Bioinformatics — Posted on 2016-09-19

212 PTRNAmark: an all-atomic distance-dependent knowledge-based potential for 3D RNA structure evaluation

Yi Yang;Qi Gu;Ya-zhou Shi;

10.1101/076000 — Bioinformatics — Posted on 2016-09-19

213 High throughput estimation of functional cell activities reveals disease mechanisms and predicts relevant clinical outcomes

Marta R Hidalgo;Cankut Cubuk;Alicia Amadoz;Francisco Salavert;Jose Carbonell Caballero;Joaquin Dopazo;

10.1101/076083 — Bioinformatics — Posted on 2016-09-19

214 Discovery of flavivirus-derived endogenous viral elements in two Anopheles mosquito genomes supports the existence of Anopheles-associated insect-specific flaviviruses

Sebastian Lequime;Louis Lambrechts;

10.1101/064907 — Evolutionary Biology — Posted on 2016-09-19

215 The FACT complex and cell cycle progression are essential to maintain asymmetric transcription factor partitioning during cell division

Eva Herrero;Sonia Stinus;Eleanor Bellows;Peter H Thorpe;

10.1101/075135 — Cell Biology — Posted on 2016-09-19

216 GenomeScope: Fast reference-free genome profiling from short reads

Gregory W Vurture;Fritz J Sedlazeck;Maria Nattestad;Charles J. Underwood;Han Fang;James Gurtowski;Michael Schatz;

10.1101/075978 — Bioinformatics — Posted on 2016-09-19

217 Clinically-weighted transcriptomic signatures for protein kinase inhibitor associated cardiotoxicity

Johan G.C. van Hasselt;Jens Hansen;Yuguang Xiong;Jaehee Shim;Amanda Pickard;Gomathi Jayaraman;B Hu;Milind Mahajan;James Gallo;Eric A Sobie;Marc R Birtwistle;Evren U Azeloglu;Ravi Iyengar;

10.1101/075754 — Pharmacology and Toxicology — Posted on 2016-09-19

218 Deriving robust biomarkers from multi-site resting-state data: An Autism-based example

Alexandre Abraham;Michael Milham;Adriana Di Martino;R. Cameron Craddock;Dimitris Samaras;Bertrand Thirion;Gaël Varoquaux;

10.1101/075853 — Neuroscience — Posted on 2016-09-19

219 Low-frequency cortical oscillations are modulated by temporal prediction and temporal error coding

Louise C Barne;Peter Claessens;Marcelo B Reyes;Marcelo S Caetano;Andre M Cravo;

10.1101/076042 — Neuroscience — Posted on 2016-09-19

220 Cortical dynamics of saccade-target selection during free-viewing of natural scenes

Linda Henriksson;Kaisu Olander;Riitta Hari;

10.1101/075929 — Neuroscience — Posted on 2016-09-19

221 Comparison of African, Asian, and American Zika Viruses in Swiss Webster mice: Virulence, neutralizing antibodies, and serotypes

Charles B Stauft;Oleksandr Gorbatsevych;Jeronimo Cello;Eckard Wimmer;Bruce Futcher;

10.1101/075747 — Microbiology — Posted on 2016-09-19

222 Quantitative analysis of cryptic splicing associated with TDP-43 depletion

Jack Humphrey;Warren Emmett;PIetro Fratta;Adrian M. Isaacs;Vincent Plagnol;

10.1101/076117 — Genomics — Posted on 2016-09-30

223 Quantitative analysis of cryptic splicing associated with TDP-43 depletion

Jack Humphrey;Warren Emmett;PIetro Fratta;Adrian M. Isaacs;Vincent Plagnol;

10.1101/076117 — Genomics — Posted on 2016-09-19

224 Massive influence of DNA isolation and library preparation approaches on palaeogenomic sequencing data

Axel Barlow;Gloria M Gonzalez Fortes;Love Dalen;Ron Pinhasi;Boris Gasparyan;Gernot Rabeder;Christine Frischchauf;Johanna L.A. Paijmans;Michael Hofreiter;

10.1101/075911 — Genomics — Posted on 2016-09-19

225 Mapping eQTLs With RNA-Seq Reveals Novel SLE Susceptibility Genes, Non-Coding RNAs, and Alternative-Splicing Events That Are Concealed Using Microarrays

Christopher A Odhams;Andrea Cortini;Lingyan Chen;Amy L Roberts;Ana Vinuela;Alfonso Buil;Kerrin S Small;Emmanouil T Dermitzakis;David L Morris;Timothy J Vyse;Deborah S Cunninghame-Graham;

10.1101/076026 — Genetics — Posted on 2016-09-21

226 Mapping eQTLs With RNA-Seq Reveals Novel SLE Susceptibility Genes, Non-Coding RNAs, and Alternative-Splicing Events That Are Concealed Using Microarrays

Christopher A Odhams;Andrea Cortini;Lingyan Chen;Amy L Roberts;Ana Vinuela;Alfonso Buil;Kerrin S Small;Emmanouil T Dermitzakis;David L Morris;Timothy J Vyse;Deborah S Cunninghame-Graham;

10.1101/076026 — Genetics — Posted on 2016-09-19

227 Genetic correlations with climate variables suggest Caenorhabditis elegans natural niche preferences

Kathryn S. Evans;Yuehui Zhao;Lijiang Long;Shannon C. Brady;Patrick T. McGrath;Erik C. Andersen;

10.1101/075960 — Genetics — Posted on 2016-09-19

228 Multiple factors influence population sex ratios in the Mojave Desert moss Syntrichia caninervis

Jenna T. Baughman;Adam C. Payton;Amber E. Paasch;Kirsten M. Fisher;Stuart F. McDaniel;

10.1101/075861 — Evolutionary Biology — Posted on 2016-09-19

229 Investigating the potential of opportunistic sighting data to inform wildlife conservation strategies

Simone Tenan;Paolo Pedrini;Natalia Bragalanti;Claudio Groff;Chris Sutherland;

10.1101/075945 — Ecology — Posted on 2016-09-19

230 Shrinking of the endangered brown bear Ursus arctos distribution in the French Pyrenees revealed by dynamic occupancy modeling

Blaise Piédallu;Pierre-Yves Quenette;Nicolas Bombillon;Adrienne Gastineau;Christian Miquel;Olivier Gimenez;

10.1101/075895 — Ecology — Posted on 2016-09-19

231 COMPARISON OF TWO DESCRIPTIONS OF HETEROGENEITY USED IN MODELLING PLANTS DYNAMICS

Michel Droz;Andrzej Pękalski;

10.1101/075812 — Ecology — Posted on 2016-09-19

232 ROLE OF TOLERANCE TO RESOURCE DEMAND -- SUPPLY MISMATCH IN A MODEL OF ANNUAL PLANTS

Michel Droz;Andrzej Pekalski;

10.1101/075804 — Ecology — Posted on 2016-09-19

233 Genome‑wide Identification and Characterization of Transcription Factors of Basic Leucine Zipper Family in Malus domestica

Zhengrong Zhang;Haoran Cui;Shanshan Xing;Xin Liu;Xuesen Chen;Xiaoyun Wang;

10.1101/075994 — Bioinformatics — Posted on 2016-09-19

234 GeRelion: GPU-enhanced parallel implementation of single particle cryo-EM image processing

Huayou Su;Wen Wen;Xiaoli Du;Xicheng Lu;Maofu Liao;Dongsheng Li;

10.1101/075887 — Molecular Biology — Posted on 2016-09-19

235 Dynamic Brain Connectivity Patterns in Conscious and Unconscious Brain

Yuncong Ma;Christina Hamilton;Nanyin Zhang;

10.1101/075788 — Neuroscience — Posted on 2016-09-19

236 N-Acyl Dopamines Induce Apoptosis in PC12 Cell Line via the O-1918-Sensitive non-CB1-non-CB2 Receptor

Mikhail Akimov;Alina M Ashba;Natalia M Gretskaya;Vladimir V Bezuglov;

10.1101/075796 — Cell Biology — Posted on 2016-09-19

237 Collateral sensitivity networks reveal evolutionary instability and novel treatment strategies in ALK mutated non-small cell lung cancer.

Andrew Dhawan;Daniel Nichol;Fumi Kinose;Mohamed E. Abazeed;Andriy Marusyk;Eric B. Haura;Jacob G. Scott;

10.1101/075846 — Cancer Biology — Posted on 2016-09-19

238 Ripping RNA by Force using Gaussian Network Models

Changbong Hyeon;Dave Thirumalai;

10.1101/075820 — Biophysics — Posted on 2016-09-19

239 Landscape of X chromosome inactivation across human tissues

Taru Tukiainen;Alexandra-Chloé Villani;Angela Yen;Manuel A. Rivas;Jamie L. Marshall;Rahul Satija;Matt Aguirre;Laura Gauthier;Mark Fleharty;Andrew Kirby;Beryl B. Cummings;Stephane E. Castel;Konrad J. Karczewski;François Aguet;Andrea Byrnes;GTEx Consortium;Tuuli Lappalainen;Aviv Regev;Kristin G. Ardlie;Nir Hacohen;Daniel G. MacArthur;

10.1101/073957 — Genomics — Posted on 2016-09-19

240 Quorum sensing integrates environmental cues, cell density and cell history to control bacterial competence

Stefany Moreno-Gamez;Robin Sorg;Morten Kjos;Franz Weissing;G. Sander van Doorn;Jan-Willem Veening;

10.1101/075762 — Microbiology — Posted on 2016-09-17

241 Chromatin Landscapes and Genetic Risk For Juvenile Idiopathic Arthritis

James N. Jarvis;Lisha Zhu;Kaiyu Jiang;Karstin Webber;Laiping Wong;Tao Liu;Yanmin Chen;

10.1101/075721 — Genetics — Posted on 2016-09-17

242 Bursting deep dorsal horn neurons: the pharmacological target for the anti-spastic effects of Zolmitriptan?

Eva Meier Carlsen;Rune Rasmussen;

10.1101/075697 — Neuroscience — Posted on 2016-09-16

243 Neuroplasticity of language in left-hemisphere stroke: evidence linking subsecond electrophysiology and structural connections

Vitoria Piai;Lars Meyer;Nina F Dronkers;Robert T Knight;

10.1101/075333 — Neuroscience — Posted on 2016-09-16

244 Insertional mutagenesis in PLNR9C transgenic mouse: a case report and a review of the literature on cardiac-specific transgenic expression

Alexander Kraev;

10.1101/075671 — Genomics — Posted on 2016-09-16

245 The species problem from the modeler’s point of view

Marc Manceau;Amaury Lambert;

10.1101/075580 — Evolutionary Biology — Posted on 2016-09-16

246 Evapotranspiration response to land cover and climate change in a Midwest U.S. watershed

Stephen K Hamilton;Mir Zaman Hussain;Christopher Lowrie;Bruno Basso;G Philip Robertson;

10.1101/075598 — Ecology — Posted on 2016-09-16

247 Better together: a transboundary approach to brown bear monitoring in the Pyrenees

Blaise Piédallu;Pierre-Yves Quenette;Ivan Alfonso Jordana;Nicolas Bombillon;Adrienne Gastineau;Ramon Jato;Christian Miquel;Pablo Munoz;Santiago Palazon;Jordi Sola de la Torre;Olivier Gimenez;

10.1101/075663 — Ecology — Posted on 2016-09-16

248 Identification of outcome-related driver mutations in cancer using conditional co-occurrence distributions

VICTOR TREVINO;Emmanuel Martinez-Ledesma;Jose Gerardo Tamez-Pena;

10.1101/075408 — Bioinformatics — Posted on 2016-09-16

249 Assessing Prediction Performance of Neoadjuvant Chemotherapy Response in Bladder Cancer

Chris Cremer;

10.1101/075705 — Bioinformatics — Posted on 2016-09-16

250 Length control of filamentous structures in cells by the limiting pool mechanism

Lishibanya Mohapatra;Thibaut J. Lagny;David Harbage;Predrag R. Jelenkovic;Jane Kondev;

10.1101/075655 — Biophysics — Posted on 2016-09-16

251 Synaesthesia lost and found: Two cases of person- and music-colour synaesthesia.

Francesca R Farina;Kevin Mitchell;Richard AP Roche;

10.1101/074955 — Neuroscience — Posted on 2016-09-16

252 Application of the stochastic labeling methods with random-sequence barcodes for simultaneous quantification and sequencing of environmental 16S rRNA genes

Tatsuhiko Hoshino;Fumio Inagaki;

10.1101/072298 — Microbiology — Posted on 2016-09-16

253 Aerobic H2 respiration enhances metabolic flexibility of methanotrophic bacteria

Carlo R Carere;Kiel Hards;Karen M Houghton;Jean F Power;Ben McDonald;Christophe Collet;Daniel J Gapes;Richard Sparling;Gregory M Cook;Chris Greening;Matthew B Stott;

10.1101/075549 — Microbiology — Posted on 2016-09-16

254 Antibiotic susceptibility of bacterial colonies: An assay and experiments with Staphylococcus aureus.

Xinxian Shao;Justin Kim;Ha Jun Jeong;Bruce Levin;

10.1101/075515 — Microbiology — Posted on 2016-09-16

255 Estimating the Selective Effect of Heterozygous Protein Truncating Variants from Human Exome Data

Christopher A. Cassa;Donate Weghorn;Daniel J. Balick;Daniel M. Jordan;David Nusinow;Kaitlin E. Samocha;Anne O'Donnell Luria;Daniel G. MacArthur;Mark J. Daly;David R. Beier;Shamil R. Sunyaev;

10.1101/075523 — Genomics — Posted on 2016-09-16

256 Geometry can provide long-range mechanical guidance for embryogenesis

Mahamar Dicko;Pierre Saramito;Jocelyn Etienne;

10.1101/075309 — Developmental Biology — Posted on 2016-09-16

257 Lipid metabolic perturbation is an early-onset phenotype in adult spin mutants: a Drosophila model for lysosomal storage disorders

sarita hebbar;Avinash Khandelwal;Jayashree R;Samantha J Hindle;Yin Ning Chiang;Joanne Yew;Sean Sweeney;Dominik Schwudke;

10.1101/075556 — Cell Biology — Posted on 2016-09-16

258 Single variant bottleneck in the early dynamics of H. influenzae bacteremia in neonatal rats questions the theory of independent action

Xinxian Shao;Bruce Levin;Ilya Nemenman;

10.1101/075531 — Biophysics — Posted on 2016-09-16

259 kWIP: The k-mer Weighted Inner Product, a de novo Estimator of Genetic Similarity

Kevin D Murray;Christfried Webers;Cheng Soon Ong;Justin O Borevitz;Norman Warthmann;

10.1101/075481 — Bioinformatics — Posted on 2016-09-16

260 State-dependent modulation of functional connectivity in early blind individuals

Maxime Pelland;Pierre Orban;Christian Dansereau;Franco Lepore;Pierre Bellec;Olivier Collignon;

10.1101/075465 — Neuroscience — Posted on 2016-09-16

261 Enhancing pre-defined workflows with ad hoc analytics using Galaxy, Docker and Jupyter

Björn Grüning;Eric Rasche;Boris Rebolledo Jaramillo;Carl Eberhard;Torsten Houwaart;John Chilton;Nathan Coraor;Rolf Backofen;James Taylor;Anton Nekrutenko;

10.1101/075457 — Bioinformatics — Posted on 2016-09-22

262 Enhancing pre-defined workflows with ad hoc analytics using Galaxy, Docker and Jupyter

Björn Grüning;Eric Rasche;Boris Rebolledo Jaramillo;Carl Eberhard;Torsten Houwaart;John Chilton;Nathan Coraor;Rolf Backofen;James Taylor;Anton Nekrutenko;

10.1101/075457 — Bioinformatics — Posted on 2016-09-16

263 Identification of Successful Mentoring Communities using Network-based Analysis of Mentor-Mentee Relationships across Nobel Laureates

Julia H. Chariker;Yihang Zhang;John R. Pani;Eric Christian Rouchka;

10.1101/075432 — Scientific Communication and Education — Posted on 2016-09-15

264 Noise-processing by signaling networks

Styliani Kontogeorgaki;Ruben Sanchez-Garcia;Rob Ewing;Konstantinos Zygalakis;Ben D. MacArthur;

10.1101/075366 — Systems Biology — Posted on 2016-09-15

265 The Real-time fMRI Neurofeedback Based Stratification of Default Network Regulation Neuroimaging Data Repository.

Amalia McDonald;Jordan Muraskin;Nicholas Thomas Van Dam;Caroline Froehlich;Benjamin Puccio;John Pellman;Clemens CC Bauer;Alexis Akeyson;Melissa Breland;Vince Calhoun;Steven Carter;Tiffany Chang;Chelsea Gessner;Alyssa Giannone;Steven Giavasis;Jamie Glass;Steven Homann;Margaret King;Melissa Kramer;Drew Landis;Alexis Lieval;Jonathan Lisinski;Anna MacKay-Brandt;Brittny Miller;Laura Panek;Hayley Reed;Christine Santiago;Eszter Schoell;Richard Sinning;Melissa Sital;Elise Taverna;Russell Tobe;Kristin Trautmann;Betty Varghese;Lauren Walden;Runtang Wang;Abigail B Waters;Dylan C Wood;F. Xavier Castellano

10.1101/075275 — Neuroscience — Posted on 2016-09-15

266 Selective activation of ganglion cells without axon bundles using epiretinal electrical stimulation

Lauren E Grosberg;Karthik Ganesan;Georges A Goetz;Sasidhar Madugula;Nandita Bhaskhar;Victoria Fan;Peter Li;Paweł Hottowy;Władysław Dabrowski;Alexander Sher;Alan M Litke;Subhasish Mitra;E.J. Chichilnisky;

10.1101/075283 — Neuroscience — Posted on 2016-09-15

267 Homeostasis of columnar synchronization during cortical map formation

Matthew T Colonnese;Jing Shen;

10.1101/075341 — Neuroscience — Posted on 2016-09-15

268 Identification of misclassified ClinVar variants using disease population prevalence

Naisha Shah;Ying-Chen Claire Hou;Hung-Chun Yu;Rachana Sainger;Eric Dec;Brad Perkins;C. Thomas Caskey;J. Craig Venter;Amalio Telenti;

10.1101/075416 — Genomics — Posted on 2016-09-15

269 A machine learning classifier trained on cancer transcriptomes detects NF1 inactivation signal in glioblastoma

Gregory P Way;Robert J Allaway;Stephanie J Bouley;Camilo E Fadul;Yolanda Sanchez;Casey S Greene;

10.1101/075382 — Genomics — Posted on 2016-09-21

270 A machine learning classifier trained on cancer transcriptomes detects NF1 inactivation signal in glioblastoma

Gregory P Way;Robert J Allaway;Stephanie J Bouley;Camilo E Fadul;Yolanda Sanchez;Casey S Greene;

10.1101/075382 — Genomics — Posted on 2016-09-15

271 The Drosophila Gene Expression Tool (DGET) for expression analyses

Yanhui Hu;Aram Comjean;Norbert Perrimon;Stephanie Mohr;

10.1101/075358 — Bioinformatics — Posted on 2016-09-15

272 MCbiclust: a novel algorithm to discover large-scale functionally related gene sets from massive transcriptomics data collections

Robert B Bentham;Kevin Bryson;Gyorgy Szabadkai;

10.1101/075374 — Bioinformatics — Posted on 2016-09-15

273 Metatranscriptomics supports mechanism for biocathode electroautotrophy by "Candidatus Tenderia electrophaga"

Brian J. Eddie;Zheng Wang;William Judson Hervey;Dagmar H. Leary;Anthony P. Malanoski;Leonard M. Tender;Baochuan Lin;Sarah M. Strycharz-Glaven;

10.1101/074997 — Microbiology — Posted on 2016-09-15

274 StereoGene: Rapid Estimation of Genomewide Correlation of Continuous or Interval Feature Data

Elena D. Stavrovskaya;Alexander V. Favorov;Tejasvi Niranjan;Sarah J. Wheelan;Andrey Mironov;

10.1101/059584 — Bioinformatics — Posted on 2016-09-21

275 StereoGene: Rapid Estimation of Genomewide Correlation of Continuous or Interval Feature Data

Elena D. Stavrovskaya;Alexander V. Favorov;Tejasvi Niranjan;Sarah J. Wheelan;Andrey Mironov;

10.1101/059584 — Bioinformatics — Posted on 2016-09-15

276 Biosynthesis of the Antibiotic Nonribosomal Peptide Penicillin in Baker’s Yeast

Ali R Awan;Benjamin A Blount;David J Bell;Jack C H Ho;Robert M McKiernan;Tom Ellis;

10.1101/075325 — Synthetic Biology — Posted on 2016-09-15

277 Functional consequences of pre- and postsynaptic expression of synaptic plasticity

Rui Ponte Costa;Beatriz E. P. Mizusaki;P. Jesper Sjostrom;Mark C. W. van Rossum;

10.1101/075317 — Neuroscience — Posted on 2016-09-15

278 Minimal Tool Set for a Prokaryotic Circadian Clock

Nicolas Schmelling;Anika Wiegard;Robert Lehmann;Paushali Chaudhury;Christian Beck;Sonja V Albers;Ilka M Axmann;

10.1101/075291 — Microbiology — Posted on 2016-09-15

279 ENVIREM: An expanded set of bioclimatic and topographic variables increases flexibility and improves performance of ecological niche modeling

Pascal O Title;Jordan B Bemmels;

10.1101/075200 — Ecology — Posted on 2016-09-14

280 Solving the influence maximization problem reveals regulatory organization of the yeast cell cycle.

David Gibbs;Ilya Shmulevich;

10.1101/075069 — Bioinformatics — Posted on 2016-09-14

281 Catalyzed Synthesis of Zinc Clays by Prebiotic Central Metabolites

Ruixin Zhou;Kaustuv Basu;Hyman Hartman;Christopher Matocha;S. Kelly Sears;Hojatollah Vali;Marcelo I Guzman;

10.1101/075176 — Synthetic Biology — Posted on 2016-09-14

282 Using a structural root system model for an in-depth assessment of root image analysis pipeline

Guillaume Lobet;Iko Koevoets;Pierre Tocquin;Loic Pages;Claire Perilleux;

10.1101/074922 — Plant Biology — Posted on 2016-09-14

283 Numericware i: Identical in state matrix calculator

Bongsong Kim;William D Beavis;

10.1101/075267 — Bioinformatics — Posted on 2016-09-14

284 Identification of important amino acid replacements in the 2013-2016 Ebola virus outbreak

Abayomi S Olabode;Derek Gatherer;Xiaowei Jiang;David Matthews;Julian A Hiscox;Stephan Gunther;Miles W Carroll;Simon C Lovell;David L Robertson;

10.1101/075168 — Microbiology — Posted on 2016-09-14

285 DNA methylation landscape of ocular tissue relative to matched to peripheral blood.

Alex Hewitt;Vania Januar;Alexandra Sexton-Oates;Jihoon E Joo;Maria Franchina;Jie Jin Wang;Helena Liang;Jamie E Craig;Richard Saffery;

10.1101/075077 — Genomics — Posted on 2016-09-14

286 Amphibian diversity and abundance in ponds is lower in exotic plantations than native forests

Maider Iglesias-Carrasco;Iraide Artexte;Carlos Cabido;Aitor Larranaga;

10.1101/074302 — Ecology — Posted on 2016-09-14

287 Sequence biases in CLIP experimental data are incorporated in protein RNA-binding models

Yaron Orenstein;Raghavendra Hosur;Sean Simmons;Jadwiga Bienkoswka;Bonnie Berger;

10.1101/075259 — Bioinformatics — Posted on 2016-09-14

288 3D chromatin structure estimation through a constraint-enhanced score function

Claudia Caudai;Emanuele Salerno;Monica Zoppè;Anna Tonazzini;

10.1101/075184 — Bioinformatics — Posted on 2016-09-14

289 Phylo-Node: a molecular phylogenetic toolkit using Node.js

Damien M O'Halloran;

10.1101/075101 — Bioinformatics — Posted on 2016-09-19

290 Phylo-Node: a molecular phylogenetic toolkit using Node.js

Damien M O'Halloran;

10.1101/075101 — Bioinformatics — Posted on 2016-09-14

291 IMiQC: a novel protein quality control compartment protecting mitochondrial functional integrity

Michael Bruderek;Witold Jaworek;Anne Wilkening;Cornelia Rüb;Giovanna Cenini;Marc Sylvester;Wolfgang Voos;

10.1101/075127 — Cell Biology — Posted on 2016-09-14

292 Industry-wide surveillance of Marek’s disease virus on commercial poultry farms: underlying potential for virulence evolution and vaccine escape

David A Kennedy;Christopher Cairns;Matthew J Jones;Andrew S Bell;Rahel M Salathe;Susan J Baigent;Venugopal K Nair;Patricia A Dunn;Andrew F Read;

10.1101/075192 — Epidemiology — Posted on 2016-09-14

293 Multi-laboratory assessment of reproducibility, qualitative and quantitative performance of SWATH-mass spectrometry

Ben C Collins;Christie L Hunter;Yansheng Liu;Birgit Schilling;George Rosenberger Rosenberger;Samuel L Bader;Daniel W Chan;Bradford W Gibson;Anne-Claude Gingras;Jason M Held;Mio Hirayama-Kurogi;Guixue Hou;Christoph Krisp Krisp;Brett Larsen;Liang Lin;Siqi Liu;Mark P Molloy;Robert L Moritz;Sumio Ohtsuki;Ralph Schlapbach;Nathalie Selevsek;Stefani N Thomas;Shin-Cheng Tzeng;Hui Zhang;Ruedi Aebersold;

10.1101/074567 — Biochemistry — Posted on 2016-09-14

294 Long-term monitoring of inflammation in the mammalian gut using programmable commensal bacteria

David T Riglar;Michael Baym;S Jordan Kerns;Matthew J Niederhuber;Roderick T Bronson;Jonathan W Kotula;Georg K Gerber;Jeffrey C Way;Pamela A. Silver;

10.1101/075051 — Synthetic Biology — Posted on 2016-09-14

295 Long-term monitoring of inflammation in the mammalian gut using programmable commensal bacteria

David T Riglar;Michael Baym;S Jordan Kerns;Matthew J Niederhuber;Roderick T Bronson;Jonathan W Kotula;Georg K Gerber;Jeffrey C Way;Pamela A. Silver;

10.1101/075051 — Synthetic Biology — Posted on 2016-09-13

296 Hand2 Inhibits Kidney Specification While Promoting Vein Formation Within the Posterior Mesoderm

Elliot A. Perens;Zayra V. Garavito-Aguilar;Gina P. Guio-Vega;Karen T. Pena;Yocheved L. Schindler;Deborah Yelon;

10.1101/075036 — Developmental Biology — Posted on 2016-09-13

297 Functionally redundant control of cardiac hypertrophic signaling by inositol 1,4,5-trisphosphate receptors

M. Iveth Garcia;Anja Karlstaedt;Javier Amione-Guerra;Keith A Youker;Heinrich Taegtmeyer;Darren Boehning;

10.1101/075044 — Cell Biology — Posted on 2016-09-13

298 Temporal mixture modelling of single-cell RNA-seq data resolves a CD4+ T cell fate bifurcation

Tapio Lönnberg;Valentine Svensson;Kylie R James;Daniel Fernandez-Ruiz;Ismail Sebina;Ruddy Montandon;Megan S F Soon;Lily G Fogg;Michael J T Stubbington;Frederik Otzen Bagger;Max Zwiessele;Neil Lawrence;Fernando Souza-Fonseca- Guimaraes;William R Heath;Oliver Billker;Oliver Stegle;Ashraful Haque;Sarah A Teichmann;

10.1101/074971 — Systems Biology — Posted on 2016-09-13

299 Cotranslational assembly imposes evolutionary constraints on homomeric proteins

Eviatar Natan;Tamaki Endoh;Liora Haim-Vilmovsky;Guilhem Chalancon;Tilman Flock;Jonathan TS Hopper;Balint Kintses;Lejla Daruka;Gergely Fekete;Csaba Pal;Balazs Papp;Peter Horvath;Joseph A Marsh;Adrian H Elcock;M Madan Babu;Carol V Robinson;Naoki Sugimoto;Sarah A Teichmann;

10.1101/074963 — Cell Biology — Posted on 2016-09-13

300 Resurrected protein interaction networks reveal the strong rewiring that leads to network organisation after whole genome duplication

Zhicheng Zhang;Heleen Coenen;Philip Ruelens;Rashmi Hazarika;Tareq Al Hindi;Georgianna Oguis;Vera Van Noort;Koen Geuten;

10.1101/074989 — Evolutionary Biology — Posted on 2016-09-13

301 Density dependence in demography and dispersal generates fluctuating invasion speeds

Lauren L. Sullivan;Bingtuan Li;Tom E. X. Miller;Michael G. Neubert;Allison K. Shaw;

10.1101/075002 — Ecology — Posted on 2016-09-13

302 Architecture and Co-Evolution of Allosteric Materials

Le Yan;Riccardo Ravasio;Carolina Brito;Matthieu Wyart;

10.1101/075028 — Biophysics — Posted on 2016-09-13

303 Optokinetic nystagmus reflects perceptual directions in the onset binocular rivalry in Parkinson′s disease

Mana Fujiwara;Catherine Ding;Lisandro Kaunitz;Julie C Stout;Dominic Thyagarajan;Naotsugu Tsuchiya;

10.1101/074898 — Neuroscience — Posted on 2016-09-13

304 Variation in olfactory neuron repertoires is genetically controlled and environmentally modulated

Ximena Ibarra-Soria;Thiago S Nakahara;Jingtao Lilue;Yue Jiang;Casey Trimmer;Mateus A.A. Souza;Paulo H.M. Netto;Kentaro Ikegami;Nicolle R Murphy;Mairi Kusma;Andrea Kirton;Luis R Saraiva;Thomas M Keane;Hiroaki Matsunami;Joel D Mainland;Fabio Papes;Darren W Logan;

10.1101/074872 — Neuroscience — Posted on 2016-09-13

305 Personalized genetic assessment of age associated Alzheimers disease risk

Rahul S. Desikan;Chun Chieh Fan;Yunpeng Wang;Andrew J. Schork;Howard J. Cabral;Adrienne Cupples;Wesley K. Thompson;Lilah Besser;Walter A. Kukull;Dominic Holland;Chi-Hua Chen;James B. Brewer;David S. Karow;Karolina Kauppi;Aree Witoelar;Celeste M. Karch;Luke W. Bonham;Jennifer S. Yokoyama;Howard J. Rosen;Bruce L. Miller;William P. Dillon;David M. Wilson;Christopher P. Hess;Margaret Pericak-Vance;Jonathan L. Haines;Lindsay A. Farrer;Richard Mayeux;John Hardy;Alison M. Goate;Bradley T. Hyman;Gerard D. Schellenberg;Linda K. McEvoy;Ole A. Andreassen;Anders N. Dale;

10.1101/074864 — Genetics — Posted on 2016-09-13

306 The Impact of Migratory Flyways on the Spread of Avian Influenza Virus in North America

Mathieu Fourment;Aaron E Darling;Edward C Holmes;

10.1101/074583 — Evolutionary Biology — Posted on 2016-09-13

307 The Causal Effects of Education on Health, Mortality, Cognition, Well-being, and Income in the UK Biobank

Neil M Davies;Matt Dickson;George Davey Smith;Gerard van den Berg;Frank Windmeijer;

10.1101/074815 — Epidemiology — Posted on 2016-09-13

308 Evidence that low socioeconomic position accentuates genetic susceptibility to obesity

Jess Tyrrell;Andrew R Wood;Ryan M Ames;Hanieh Yaghootkar;Robin Beaumont;Samuel E Jones;Marcus A Tuke;Katherine S Ruth;Rachel M Freathy;George Davey-Smith;Stephane Joost;Idris Guessous;Anna Murray;David P Strachan;Zoltan Kutalik;Michael N Weedon;Timothy M Frayling;

10.1101/074054 — Genetics — Posted on 2016-09-13

309 Distributed representation of context by intrinsic subnetworks in prefrontal cortex

Michael L Waskom;Anthony D Wagner;

10.1101/074880 — Neuroscience — Posted on 2016-09-13

310 Na-Dene populations descend from the Paleo-Eskimo migration into America

Pavel Flegontov;Nefize Ezgi Altinisik;Piya Changmai;Edward J Vajda;Johannes Krause;Stephan Schiffels;

10.1101/074476 — Genetics — Posted on 2016-09-13

311 Universal attenuators and their interactions with feedback loops in gene regulatory networks

Dianbo Liu;Luca Albergante;Timothy Newman;

10.1101/074716 — Systems Biology — Posted on 2016-09-12

312 Relating dynamic brain states to dynamic machine states: human and machine solutions to the speech recognition problem

Cai Wingfield;Li Su;Xunying Liu;Chao Zhang;Philip Woodland;Andrew Thwaites;Elisabeth Fonteneau;William D Marslen-Wilson;

10.1101/074799 — Neuroscience — Posted on 2016-09-12

313 Directed Network Discovery with Dynamic Network Modeling

Stefano Anzellotti;Dorit Kliemann;Nir Jacoby;Rebecca Saxe;

10.1101/074286 — Neuroscience — Posted on 2016-09-12

314 Fast algorithm for determining orientations using angular correlation functions and Bayesian statistics

Lanqing Huang;Haiguang Liu;

10.1101/074732 — Molecular Biology — Posted on 2016-09-12

315 PRIMA: a gene-centered, RNA-to-protein method for mapping RNA-protein interactions

Alex M Tamburino;Ebru Kaymak;Shaleen Shrestha;Amy D Holdorf;Sean P Ryder;Marian (Albertha) Walhout;

10.1101/074823 — Molecular Biology — Posted on 2016-09-12

316 A large collection of novel nematode-infecting microsporidia and their diverse interactions with C. elegans and other related nematodes

Gaotian Zhang;Martin Sachse;Marie-Christine Prevost;Robert J Luallen;Emily Troemel;Marie-Anne Felix;

10.1101/074757 — Microbiology — Posted on 2016-09-12

317 Quantifying the extent to which index event biases influence large genetic association studies

Hanieh Yaghootkar;Michael Bancks;Sam Jones;Aaron McDaid;Robin Beaumont;Louise Donnelly;Andrew Wood;Archie Campbell;Jessica Tyrrell;Lynne Hocking;Marcus Tuke;Katherine Ruth;Ewan Pearson;Anna Murray;Rachel Freathy;Patricia Munroe;Caroline Hayward;Colin Palmer;Michael Weedon;James Pankow;Timothy Frayling;Zoltan Kutalik;

10.1101/074781 — Genetics — Posted on 2016-09-12

318 Metagenomic sequencing of dung beetle intestinal contents directly detects and identifies mammalian fauna

Conrad P.D.T. Gillett;Andrew J Johnson;Iain Barr;Jiri Hulcr;

10.1101/074849 — Ecology — Posted on 2016-09-12

319 HDP-Align: Hierarchical Dirichlet Process Clustering for Multiple Peak Alignment of Liquid Chromatography Mass Spectrometry Data.

Joe Wandy;Ronan Daly;Simon Rogers;

10.1101/074831 — Bioinformatics — Posted on 2016-09-13

320 HDP-Align: Hierarchical Dirichlet Process Clustering for Multiple Peak Alignment of Liquid Chromatography Mass Spectrometry Data.

Joe Wandy;Ronan Daly;Simon Rogers;

10.1101/074831 — Bioinformatics — Posted on 2016-09-12

321 Annotation and differential analysis of alternative splicing using de novo assembly of RNAseq data

Clara Benoit-Pilven;Camille Marchet;Emilie Chautard;Leandro Lima;Marie-Pierre Lambert;Gustavo Sacomoto;Amandine Rey;Cyril Bourgeois;Didier Auboeuf;Vincent Lacroix;

10.1101/074807 — Bioinformatics — Posted on 2016-09-12

322 A bromodomain-DNA interaction facilitates acetylation-dependent bivalent nucleosome recognition by the BET protein BRDT

Thomas CR Miller;Bernd Simon;Vladimir Rybin;Helga Grötsch;Sandrine Curtet;Saadi Khochbin;Teresa Carlomagno;Christoph W Müller;

10.1101/074773 — Biochemistry — Posted on 2016-09-12

323 Chromatin marks govern mutation landscape of cancer at early stage of progression

Kyungsik Ha;Hong-Gee Kim;Hwajin Lee;

10.1101/074724 — Genomics — Posted on 2016-09-12

324 A note on detecting statistical outliers in psychophysical data

Pete R Jones;

10.1101/074591 — Neuroscience — Posted on 2016-09-12

325 Single-cell transcriptome analysis of fish immune cells provides insight into the evolution of vertebrate immunity

Santiago J Carmona;Sarah A Teichmann;Lauren Ferreira;Iain C Macaulay;Michael J.T. Stubbington;Ana Cvejic;David Gfeller;

10.1101/074344 — Immunology — Posted on 2016-09-12

326 Graph Theory Approaches for Optimizing Biomedical Data Analysis Using Reproducible Workflows

Gaurav Kaushik;Sinisa Ivkovic;Janko Simonovic;Nebojsa Tijanic;Brandi Davis-Dusenbery;Deniz Kural;

10.1101/074708 — Bioinformatics — Posted on 2016-09-12

327 UCHIME2: improved chimera prediction for amplicon sequencing

Robert Edgar;

10.1101/074252 — Bioinformatics — Posted on 2016-09-12

328 Predicting binding free energies: Frontiers and benchmarks

David L. Mobley;Michael K. Gilson;

10.1101/074625 — Biophysics — Posted on 2016-09-11

329 Design principles of autocatalytic cycles constrain enzyme kinetics and force over-expression at flux branch points

Uri Barenholz;Dan Davidi;Ed Reznik;Yinon Bar-On;Niv Antonovsky;Elad Noor;Ron Milo;

10.1101/074641 — Systems Biology — Posted on 2016-09-11

330 Thermally moderated firefly activity is delayed by precipitation extremes

Elizabeth Davidson-Lowe;Bahodir Eshchanov;Sara Hermann;Andrew Myers;Logan Rowe;Saisi Xue;Christie A Bahlai;

10.1101/074633 — Ecology — Posted on 2016-09-11

331 Revealing complex ecological dynamics via symbolic regression

Yize Chen;Marco Tulio Angulo;Yang-Yu Liu;

10.1101/074617 — Bioinformatics — Posted on 2016-09-11

332 Joint analysis of area and thickness of the cerebral cortex replaces cortical volume measurements

Anderson M. Winkler;Douglas N. Greve;Knut J. Bjuland;Thomas E. Nichols;Mert R. Sabuncu;Asta K. Haberg;Jon Skranes;Lars M. Rimol;

10.1101/074666 — Neuroscience — Posted on 2016-09-13

333 Joint analysis of area and thickness of the cerebral cortex replaces cortical volume measurements

Anderson M. Winkler;Douglas N. Greve;Knut J. Bjuland;Thomas E. Nichols;Mert R. Sabuncu;Asta K. Haberg;Jon Skranes;Lars M. Rimol;

10.1101/074666 — Neuroscience — Posted on 2016-09-11

334 Global Reduction of Information Exchange during Anesthetic-Induced Unconsciousness

Christina Hamilton;Yuncong Ma;Nanyin Zhang;

10.1101/074658 — Neuroscience — Posted on 2016-09-11

335 Valuation in major depression is intact and stable in a non-learning environment

Dongil Chung;Kelly Kadlec;Jason A Aimone;Katherine McCurry;Brooks King-Casas;Pearl H Chiu;

10.1101/074690 — Neuroscience — Posted on 2016-09-23

336 Valuation in major depression is intact and stable in a non-learning environment

Dongil Chung;Kelly Kadlec;Jason A Aimone;Katherine McCurry;Brooks King-Casas;Pearl H Chiu;

10.1101/074690 — Neuroscience — Posted on 2016-09-11

337 Top-Down Beta Oscillatory Signaling Conveys Behavioral Context to Primary Visual Cortex

Craig Geoffrey Richter;Richard Coppola;Steven L. Bressler;

10.1101/074609 — Neuroscience — Posted on 2016-09-11

338 Validation of Reference Genes for RT-qPCR in Marine Bivalve Ecotoxicology: Systematic Review and Case Study

Moritz Volland;Julian Blasco;Miriam Hampel;

10.1101/074542 — Molecular Biology — Posted on 2016-09-11

339 Estimating the causal tissues for complex traits and diseases

Halit Ongen;Andrew A Brown;Olivier Delaneau;Nikolaos Panousis;Alexandra C Nica;GTEx Consortium;Emmanouil T Dermitzakis;

10.1101/074682 — Genetics — Posted on 2016-09-11

340 Identification of quercetin from fruits to immediately fight Zika

Amrita Roy;Liangzhong Lim;Jianxing Song;

10.1101/074559 — Biochemistry — Posted on 2016-09-11

341 Rapid metagenomic next-generation sequencing during an investigation of hospital-acquired human parainfluenza virus 3 infections

Alex Greninger;Danielle M Zerr;Xuan Qin;Amanda L Adler;Janet A Englund;Keith R Jerome;

10.1101/074500 — Microbiology — Posted on 2016-09-10

342 Genome-wide reconstruction of complex structural variants using read clouds

Noah Spies;Ziming Weng;Alex Bishara;Jennifer McDaniel;David Catoe;Justin M Zook;Marc Salit;Robert B West;Serafim Batzoglou;Arend Sidow;

10.1101/074518 — Genomics — Posted on 2016-09-10

343 Properties of compostite feedback-feedforward pulse generating motifs.

Bharat Ravi Iyengar;

10.1101/074377 — Systems Biology — Posted on 2016-09-10

344 Close genetic relationships between a spousal pair with autism-affected children and high minor allele content in cases in autism-associated SNPs

Zuobin Zhu;Xitong Lu;Dejian Yuan;Shi Huang;

10.1101/073452 — Genomics — Posted on 2016-09-11

345 Close genetic relationships between a spousal pair with autism-affected children and high minor allele content in cases in autism-associated SNPs

Zuobin Zhu;Xitong Lu;Dejian Yuan;Shi Huang;

10.1101/073452 — Genomics — Posted on 2016-09-10

346 A Numerus Population Viability and Harvesting Analyses Web App

Wayne Getz;Oliver C Muellerklein;Richard Salter;Colin Carlson;Andrew Lyons;Dana Paige Seidel;

10.1101/074492 — Ecology — Posted on 2016-09-14

347 A Numerus Population Viability and Harvesting Analyses Web App

Wayne Getz;Oliver C Muellerklein;Richard Salter;Colin Carlson;Andrew Lyons;Dana Paige Seidel;

10.1101/074492 — Ecology — Posted on 2016-09-11

348 A Numerus Population Viability and Harvesting Analyses Web App

Wayne Getz;Oliver C Muellerklein;Richard Salter;Colin Carlson;Andrew Lyons;Dana Paige Seidel;

10.1101/074492 — Ecology — Posted on 2016-09-10

349 Simulation model for dynamics of three types of annual plants

Andrzej Pekalski;

10.1101/074393 — Ecology — Posted on 2016-09-10

350 A phenomenological spatial model for macro-ecological patterns in species-rich ecosystems

Sandro Azaele;Fabio Peruzzo;

10.1101/074336 — Ecology — Posted on 2016-09-10

351 MathIOmica: An Integrative Platform for Dynamic Omics

George Mias;Tahir Yusufaly;Raeuf Roushangar;Lavida R.K. Brooks;Vikas Vikram Singh;Christina Christou;

10.1101/074260 — Bioinformatics — Posted on 2016-09-10

352 Stochastic dynamics of genetic broadcasting networks

Davit Potoyan;Peter Wolynes;

10.1101/074401 — Systems Biology — Posted on 2016-09-09

353 Prefrontal cortical control of a brainstem social behavior circuit

Tamara B. Franklin;Bianca A. Silva;Zinaida Perova;Livia Marrone;Maria E. Masferrer;Yang Zhan;Angie Kaplan;Louise Greetham;Voilaine Verrechia;Andreas Halman;Sara Pagella;Alexei L. Vyssotski;Anna Illarianova;Tiago Branco;Cornelius T. Gross;

10.1101/073734 — — Posted on 2016-09-09

354 Shared roles of dorsal and subgenual anterior cingulate cortices in economic decisions

Habiba Azab;Benjamin Y. Hayden;

10.1101/074484 — Neuroscience — Posted on 2016-09-09

355 A single intracellular protein governs the critical transition from an individual to a coordinated population response during quorum sensing: Origins of primordial language

Celina Vila-Sanjurjo;Christoph Engwer;Xiaofei Qin;Lea Hembach;Tania Verdía-Cotelo;Carmen Remuñán-López;Antón Vila-Sanjurjo;Francisco M. Goycoolea;

10.1101/074369 — Microbiology — Posted on 2016-09-09

356 Distant regulatory effects of genetic variation in multiple human tissues

Brian Jo;Yuan He;Benjamin J Strober;Princy Parsana;Francois Aguet;Andrew A Brown;Stephane E Castel;Eric R Gamazon;Ariel Gewirtz;Genna Gliner;Buhm Han;Amy Z He;Eun Yong Kang;Ian C McDowell;Xiao Li;Pejman Mohammadi;Christine B Peterson;Gerald Quon;Ashis Saha;Ayellet V Segre;Jae Hoon Sul;Timothy J Sullivan;Kristin G Ardlie;Christopher D Brown;Donald F Conrad;Nancy J Cox;Emmanouil T Dermitzakis;Eleazar Eskin;Manolis Kellis;Tuuli Lappalainen;Chiara Sabatti;GTEx Consortium;Barbara E Engelhardt;Alexis Battle;

10.1101/074419 — Genomics — Posted on 2016-09-09

357 Local genetic effects on gene expression across 44 human tissues

Francois Aguet;Andrew A Brown;Stephane Castel;Joe R Davis;Pejman Mohammadi;Ayellet V Segre;Zachary Zappala;Nathan S Abell;Laure Fresard;Eric R Gamazon;Ellen Gelfand;Machael J Gloudemans;Yuan He;Farhad Hormozdiari;Xiao Li;Xin Li;Boxiang Liu;Diego Garrido-Martin;Halit Ongen;John J Palowitch;YoSon Park;Christine B Peterson;Gerald Quon;Stephan Ripke;Andrey A Shabalin;Tyler C Shimko;Benjamin J Strober;Timothy J Sullivan;Nicole A Teran;Emily K Tsang;Hailei Zhang;Yi-Hui Zhou;Alexis Battle;Carlos D Bustamonte;Nancy J Cox;Barbara E Engelhardt;Eleazar Eskin;Gad Getz;Manolis Kellis;Gen Li;Daniel G MacArt

10.1101/074450 — Genomics — Posted on 2016-09-09

358 The impact of rare variation on gene expression across tissues

Xin Li;Yungil Kim;Emily K. Tsang;Joe R. Davis;Farhan N. Damani;Colby Chiang;Zachary Zappala;Benjamin J. Strober;Alexandra J. Scott;Andrea Ganna;Jason Merker;GTEx Consortium;Ira M. Hall;Alexis Battle;Stephen B. Montgomery;

10.1101/074443 — Genomics — Posted on 2016-09-09

359 MAPPING OF LONG-RANGE CHROMATIN INTERACTIONS BY PROXIMITY LIGATION ASSISTED CHIP-SEQ

Rongxin Fang;Miao Yu;Guoqiang Li;Sora Chee;Tristin Liu;Anthony Schmitt;Bing Ren;

10.1101/074294 — Genomics — Posted on 2016-09-09

360 Who’s who? Detecting and resolving sample anomalies in human DNA sequencing studies with peddy

Aaron R Quinlan;Brent S Pedersen;

10.1101/074385 — Genomics — Posted on 2016-09-09

361 Re-evaluation of SNP heritability in complex human traits

Doug Speed;Na Cai;The UCLEB Consortium;Michael Johnson;Sergey Nejentsev;David Balding;

10.1101/074310 — — Posted on 2016-09-09

362 Fitness effects of thermal stress differ between outcrossing and selfing populations in Caenorhabditis elegans

Agata Plesnar-Bielak;Marta K. Labocha;Paulina Kosztyła;Katarzyna R. Woch;Woronika M. Banot;Karolina Markot;Magdalena Skarboń;Monika A. Prus;Zofia M. Prokop;

10.1101/074328 — Ecology — Posted on 2016-09-09

363 A framework for RNA quality correction in differential expression analysis

Andrew E Jaffe;Ran Tao;Alexis Norris;Marc Kealhofer;Abhinav Nellore;Yankai Jia;Thomas Hyde;Joel Kleinman;Richard Straub;Jeffrey T Leek;Daniel Weinberger;

10.1101/074245 — Bioinformatics — Posted on 2016-09-09

364 SINTAX: a simple non-Bayesian taxonomy classifier for 16S and ITS sequences

Robert Edgar;

10.1101/074161 — Bioinformatics — Posted on 2016-09-09

365 Automated Visualization of Rule-based Models

John A.P. Sekar;Jose-Juan Tapia;James R. Faeder;

10.1101/074138 — Systems Biology — Posted on 2016-09-09

366 Comparing individual-based approaches to modelling the self-organization of multicellular tissues

James M. Osborne;Alexander G. Fletcher;Joseph M. Pitt-Francis;Philip K. Maini;David J. Gavaghan;

10.1101/074351 — Systems Biology — Posted on 2016-09-09

367 Capacity-approaching DNA storage

Yaniv Erlich;Dina Zielinski;

10.1101/074237 — Synthetic Biology — Posted on 2016-09-09

368 Capacity-approaching DNA storage

Yaniv Erlich;Dina Zielinski;

10.1101/074237 — Synthetic Biology — Posted on 2016-09-09

369 Capacity-approaching DNA storage

Yaniv Erlich;Dina Zielinski;

10.1101/074237 — Synthetic Biology — Posted on 2016-09-09

370 Improving genetic diagnosis in Mendelian disease with transcriptome sequencing

Beryl B Cummings;Jamie L Marshall;Taru Tukiainen;Monkol Lek;Sandra Donkervoort;A. Reghan Foley;Veronique Bolduc;Leigh Waddell;Sarah Sandaradura;Gina L O'Grady;Elicia Estrella;Hemakumar Mutra Reddy;Fengmei Zhao;Ben Weisburd;Konrad Karczewski;Anne O'Donnell-Luria;Daniel Birnbaum;Anna Sarkozy;Ying Hu;Hernan Gonorazky;Kristl Claeys;Himanshu Joshi;Adam Bournazos;Emily Oates;Roula Ghaoui;Mark Davis;Nigel G Laing;Ana Topf;GTEx Consortium;Alan Beggs;Peter B Kang;Kathryn N North;Volker Straub;James Dowling;Francesco Muntoni;Nigel F Clarke;Sandra T Cooper;Carsten G Bonnemann;Daniel G MacArthur;

10.1101/074153 — Genomics — Posted on 2016-09-09

371 Improving genetic diagnosis in Mendelian disease with transcriptome sequencing

10.1101/074153 — Genomics — Posted on 2016-09-08

372 Power Analysis of Single Cell RNA‐Sequencing Experiments

Valentine Svensson;Kedar N Natarajan;Lam-Ha Ly;Ricardo J Miragaia;Charlotte Labalette;Iain C Macaulay;Ana Cvejic;Sarah A Teichmann;

10.1101/073692 — Genomics — Posted on 2016-09-08

373 Learning to cooperate: The evolution of social rewards in repeated interactions

Slimane Dridi;Erol Akcay;

10.1101/074096 — Evolutionary Biology — Posted on 2016-09-08

374 Phylogenetic factorization of compositional data

Alex D Washburne;Justin D Silverman;Jonathan Leff;Dominic J Bennett;John L Darcy;Sayan Mukherjee;NOAH FIERER;Lawrence A David;

10.1101/074112 — Bioinformatics — Posted on 2016-09-12

375 Phylogenetic factorization of compositional data

Alex D Washburne;Justin D Silverman;Jonathan Leff;Dominic J Bennett;John L Darcy;Sayan Mukherjee;NOAH FIERER;Lawrence A David;

10.1101/074112 — Bioinformatics — Posted on 2016-09-08

376 Design of Vaccine Trials during Outbreaks with and without a Delayed Vaccination Comparator

Natalie Exner Dean;M Elizabeth Halloran;Ira M Longini;

10.1101/074088 — Epidemiology — Posted on 2016-09-08

377 The impact of the newly licensed dengue vaccine in endemic countries

Maira Aguiar;Scott B. Halstead;Nico Stollenwerk;

10.1101/074062 — Epidemiology — Posted on 2016-09-08

378 Insertion patterns of P{lacW} and P{EP} artificial transposons on the third chromosome of Drosophila melanogaster

Laura Ioana Popa;Attila Cristian Ratiu;Alexandru Al. Ecovoiu;

10.1101/074070 — Genetics — Posted on 2016-09-08

379 13C metabolic flux ratio analysis by direct measurement of free metabolic intermediates in L. mexicana using gas chromatography-mass spectrometry

Milica Ng;Eleanor C. Saunders;Moshe Olshansky;Malcolm J. McConville;Vladimir Likic;

10.1101/073676 — Systems Biology — Posted on 2016-09-08

380 A spatially resolved network spike in model neuronal cultures reveals nucleation centers, circular traveling waves and drifting spiral waves

Alexander Paraskevov;Dmitry Zendrikov;

10.1101/073981 — Neuroscience — Posted on 2016-09-08

381 A self-initiated two-alternative forced choice paradigm for head-fixed mice

Fred Marbach;Anthony M Zador;

10.1101/073783 — Neuroscience — Posted on 2016-09-10

382 A self-initiated two-alternative forced choice paradigm for head-fixed mice

Fred Marbach;Anthony M Zador;

10.1101/073783 — Neuroscience — Posted on 2016-09-08

383 HiChIP: Efficient and sensitive analysis of protein-directed genome architecture

Maxwell R Mumbach;Adam J. Rubin;Ryan A. Flynn;Chao Dai;Paul A. Khavari;William J. Greenleaf;Howard Y. Chang;

10.1101/073619 — Genomics — Posted on 2016-09-08

384 Assessing the public health impact of tolerance-based therapies with mathematical models

Nathanael Hoze;Sebastian Bonhoeffer;Roland Regoes;

10.1101/073700 — Epidemiology — Posted on 2016-09-08

385 Overcoming confounding plate effects in differential expression analyses of single-cell RNA-seq data

Aaron TL Lun;John C Marioni;

10.1101/073973 — Bioinformatics — Posted on 2016-09-08

386 Secondary-structure prediction revisited: Pβ and Pc represent structures of amyloids and aid elucidating phenomena in interspecies transmissions of prion.

YUZURU TAGUCHI;Noriyuki Nishida;

10.1101/073668 — Bioinformatics — Posted on 2016-09-08

387 MTQuant: "Seeing" Beyond the Diffraction Limit in Fluorescence Images to Quantify Neuronal Microtubule Organization

Roshni Cooper;Shaul Yogev;Kang Shen;Mark Horowitz;

10.1101/074047 — Bioinformatics — Posted on 2016-09-08

388 Draft genomes of clinical Bacillus cereus isolates AH725 and B06.009 closely related to reference strains ATCC 14579 and ATCC 10987

Thomas HA Haverkamp;Nicolas J Tourasse;Alexander J Nederbragt;Kjetill Sigurd Jakobsen;Anne-Brit Kolstø;Ole Andreas Økstad;

10.1101/073924 — Microbiology — Posted on 2016-09-07

389 A Bayesian method for reducing bias in neural representational similarity analysis

Ming Bo Cai;Nicolas W Schuck;Jonathan Pillow;Yael Niv;

10.1101/073932 — Neuroscience — Posted on 2016-09-07

390 Preserved position information in high-level visual cortex with large receptive fields

Kei Majima;Paul Sukhanov;Tomoyasu Horikawa;Yukiyasu Kamitani;

10.1101/073940 — Neuroscience — Posted on 2016-09-07

391 Spatial patterning of P granules by RNA-induced phase separation of the intrinsically-disordered protein MEG-3

Jarrett Smith;Deepika Calidas;Helen Schmidt;Tu Lu;Dominique Rasoloson;Geraldine Seydoux;

10.1101/073908 — Molecular Biology — Posted on 2016-09-07

392 Extreme metagenomics using nanopore DNA sequencing: a field report from Svalbard, 78 N

Arwyn Edwards;Aliyah R Debbonaire;Birgit Sattler;Luis AJ Mur;Andrew J Hodson;

10.1101/073965 — Microbiology — Posted on 2016-09-07

393 A living vector field reveals constraints on galactose network induction in yeast

Sarah R. Stockwell;Scott A. Rifkin;

10.1101/073817 — Systems Biology — Posted on 2016-09-13

394 A living vector field reveals constraints on galactose network induction in yeast

Sarah R. Stockwell;Scott A. Rifkin;

10.1101/073817 — Systems Biology — Posted on 2016-09-06

395 Cell-free translation is more variable than transcription

Fabio Chizzolini;Michele Forlin;Sheref S Mansy;

10.1101/073841 — Synthetic Biology — Posted on 2016-09-06

396 Functional connectivity models for brain state identification: application to decoding of spatial representations from hippocampal CA1 and CA3 recordings

Lorenzo Posani;Simona Cocco;Karel Jezek;Remi Monasson;

10.1101/073759 — Neuroscience — Posted on 2016-09-20

397 Functional connectivity models for brain state identification: application to decoding of spatial representations from hippocampal CA1 and CA3 recordings

Lorenzo Posani;Simona Cocco;Karel Jezek;Remi Monasson;

10.1101/073759 — Neuroscience — Posted on 2016-09-06

398 Volumetric Two-photon Imaging of Neurons Using Stereoscopy (vTwINS)

Alexander Song;Adam S. Charles;Sue Ann Koay;Jeff L. Gauthier;Stephan Y. Thiberge;Jonathan W. Pillow;David W. Tank;

10.1101/073742 — Neuroscience — Posted on 2016-09-06

399 Interplay between periodic stimulation and GABAergic inhibition in striatal network oscillations

Jovana Belic;Arvind Kumar;Jeanette Hellgren Kotaleski;

10.1101/073874 — Neuroscience — Posted on 2016-09-06

400 Investigation of the sexual reproduction strategy of the Perigord black truffle (Tuber melanosporum Vittad.) revealed trioecy

Herminia De la Varga;Francois Le Tacon;Melanie Lagoguet;Flora Todesco;Torda Varga;Igor Miquel;Dominique Barry-Etienne;Christophe Robin;Fabien Halkett;Francis Martin;Claude Murat;

10.1101/073650 — Microbiology — Posted on 2016-09-06

401 Genome-wide binding of posterior HOXA/D transcription factors reveals subgrouping and association with CTCF

Ivana Jerković;Daniel Murad Ibrahim;Guillaume Andrey;Stefan Haas;Peter Hansen;Catrin Janetzki;Irene González Navarrete;Peter Nick Robinson;Jochen Hecht;Stefan Mundlos;

10.1101/073593 — Genomics — Posted on 2016-09-06

402 Integrative classification of human coding and non-coding genes based on RNA metabolism profiles

Neelanjan Mukherjee;Lorenzo Calviello;Antje Hirsekorn;Stefano de Pretis;Mattia Pelizzola;Uwe Ohler;

10.1101/073643 — Genomics — Posted on 2016-09-06

403 Discovering DNA motifs and genomic variants associated with DNA methylation

Haoyang Zeng;David K. Gifford;

10.1101/073809 — Genomics — Posted on 2016-09-06

404 High-throughput detection of RNA processing in bacteria

Erin E Gill;Luisa S Chan;Geoffrey L Winsor;Neil Dobson;Raymond Lo;Shannan J Ho Sui;Bhavjinder K Dhillon;Patrick K Taylor;Raunak Shrestha;Cory Spencer;Robert E W Hancock;Peter J Unrau;Fiona S L Brinkman;

10.1101/073791 — Genomics — Posted on 2016-09-06

405 The impact of recent population history on the deleterious mutation load in humans and close evolutionary relatives

Yuval B Simons;Guy Sella;

10.1101/073635 — Evolutionary Biology — Posted on 2016-09-16

406 The impact of recent population history on the deleterious mutation load in humans and close evolutionary relatives

Yuval B Simons;Guy Sella;

10.1101/073635 — Evolutionary Biology — Posted on 2016-09-13

407 The impact of recent population history on the deleterious mutation load in humans and close evolutionary relatives

Yuval B Simons;Guy Sella;

10.1101/073635 — Evolutionary Biology — Posted on 2016-09-06

408 SVScore: An Impact Prediction Tool For Structural Variation

Liron Ganel;Haley J Abel;Ira M Hall;

10.1101/073833 — Bioinformatics — Posted on 2016-09-06

409 De novo extraction of microbial strains from metagenomes reveals intra-species niche partitioning

Christopher Quince;Stephanie Connelly;Sebastien Raguideau;Johannes Alneberg;Seung Gu Shin;Gavin Collins;A. Murat Eren;

10.1101/073825 — Bioinformatics — Posted on 2016-09-06

410 Dissection of the contribution of regulation mode to the properties of feedforward and feedback and gene regulatory motifs.

Bharat Iyengar;Beena Pillai;K.V. Venkatesh;Chetan J Gadgil;

10.1101/065698 — Systems Biology — Posted on 2016-09-20

411 Dissection of the contribution of regulation mode to the properties of feedforward and feedback and gene regulatory motifs.

Bharat Iyengar;Beena Pillai;K.V. Venkatesh;Chetan J Gadgil;

10.1101/065698 — Systems Biology — Posted on 2016-09-06

412 Molecular adaptation in Rubisco: discriminating between convergent evolution and positive selection using mechanistic and classical codon models

Sahar Parto;Nicolas Lartillot;

10.1101/073684 — Evolutionary Biology — Posted on 2016-09-06

413 Ethnically relevant consensus Korean reference genome towards personal reference genomes

Yun Sung Cho;Hyunho Kim;Hak-Min Kim;Sungwoong Jho;JeHoon Jun;Yong Joo Lee;Kyun Shik Chae;Chang Geun Kim;Sangsoo Kim;Anders Eriksson;Jeremy S Edwards;Semin Lee;Byung Chul Kim;Andrea Manica;George M Church;Jong Bhak;

10.1101/070805 — Genomics — Posted on 2016-09-06

414 Transcriptome analysis revealed the possible contribution of chromosome introgression fragments from Sea Island cotton (Gossypium barbadense) to fiber strength in Upland cotton (Gossypium hirsutum)

Quanwei Lu;Yuzhen Shi;Xianghui Xiao;Pengtao Li;Juwu Gong;Aiying Liu;Haihong Shang;Wankui Gong;Tingting Chen;Qun Ge;Junwen Li;Wei Su;Shaoqi Li;Zhen Zhang;Youlu Yuan;Jinling Huang;

10.1101/073726 — Genomics — Posted on 2016-09-06

415 Precise label-free quantitative proteomes in high-throughput by microLC and data-independent SWATH acquisition

Jakob Vowinckel;Aleksej Zelezniak;Artur Kibler;Roland Bruderer;Michael Muelleder;Lukas Reiter;Markus Ralser;

10.1101/073478 — Systems Biology — Posted on 2016-09-05

416 Impact of type 2 diabetes on cardiorespiratory function and exercise performance

Joanie Caron;Gregory R duManoir;Lawrence Labrecque;Audrey Chouinard;Annie Ferland;Sylvie Legault;Paul Poirier;Patrice Brassard;

10.1101/073205 — Physiology — Posted on 2016-09-05

417 Investigating resting-state functional connectivity in the cervical spinal cord at 3T

Falk Eippert;Yazhuo Kong;Anderson M Winkler;Jesper L Andersson;Jurgen Finsterbusch;Christian Buchel;Jonathan CW Brooks;Irene Tracey;

10.1101/073569 — Neuroscience — Posted on 2016-09-05

418 Specific excitatory connectivity for feature integration in mouse primary visual cortex

Dylan Muir;Patricia Molina-Luna;Morgane M Roth;Fritjof Helmchen;Bjoern Kampa;

10.1101/072595 — Neuroscience — Posted on 2016-09-05

419 Intrinsic brain connectivity after partial sleep deprivation in young and older adults: results from the Stockholm Sleepy Brain study

Gustav Nilsonne;Sandra Tamm;Johanna Schwarz;Rita Almeida;Håkan Fischer;Göran Kecklund;Mats Lekander;Peter Fransson;Torbjörn Åkerstedt;

10.1101/073494 — Neuroscience — Posted on 2016-09-05

420 Improving the temporal accuracy of functional Magnetic Resonance Imaging

Niels Janssen;Juan A Hernández-Cabrera;Laura Ezama Foronda;

10.1101/073437 — Neuroscience — Posted on 2016-09-05

421 Measuring MEG closer to the brain: Performance of on-scalp sensor arrays

Joonas Iivanainen;Matti Stenroos;Lauri Parkkonen;

10.1101/073585 — Neuroscience — Posted on 2016-09-05

422 Retroviral origins of the Caenorhabditis elegans orphan gene F58H7.5.

Wadim J Kapulkin;

10.1101/073510 — Genomics — Posted on 2016-09-05

423 Comparative genomics and metagenomics analyses of endangered Père David’s deer (Elaphurus davidianus) provide insights into population recovery

Lifeng Zhu;Xuejing Zhang;Cao Deng;Jingjing Ding;Yi Ren;Xiang Zhao;Shishang Qin;Shilin Zhu;Zhiwen Wang;Xiaoqiang Chai;Huasheng Huang;Yuhua Ding;Guoqing Lu;

10.1101/073528 — Evolutionary Biology — Posted on 2016-09-05

424 Semi-Automated Identification of Ontological Labels in the Biomedical Literature with goldi

Christopher B. Cole;Sejal Patel;Jo Knight;

10.1101/073460 — Bioinformatics — Posted on 2016-09-05

425 Behavioral syndromes can reduce population density: behavior and demographic heterogeneity

Bruce Kendall;Gordon A Fox;Joseph P Stover;

10.1101/073262 — Animal Behavior and Cognition — Posted on 2016-09-05

426 An efficient extension of N-mixture models for multi-species abundance estimation

Juan Pablo Gomez;Scott K. Robinson;Jose Miguel Ponciano;

10.1101/073577 — Ecology — Posted on 2016-09-05

427 Improved assemblies and comparison of two ancient Yersinia pestis genomes

Nina Luhmann;Daniel Doerr;Cedric Chauve;

10.1101/073445 — Bioinformatics — Posted on 2016-09-05

428 Differential Expression Analysis for RNAseq using Poisson Mixed Models

Shiquan Sun;Michelle Hood;Laura Scott;Qinke Peng;Sayan Mukherjee;Jenny Tung;Xiang Zhou;

10.1101/073403 — Genomics — Posted on 2016-09-05

429 Ultrasensitive detection of TCR hypervariable region in solid-tissue RNA-seq data

Bo Li;Taiwen Li;Binbin Wang;Ruoxu Dou;Jean-Chrisophe Pignon;Toni K Choueiri;Sabina Signoretti;Jun S Liu;Xiaole Shirley Liu;

10.1101/073395 — Bioinformatics — Posted on 2016-09-09

430 Ultrasensitive detection of TCR hypervariable region in solid-tissue RNA-seq data

Bo Li;Taiwen Li;Binbin Wang;Ruoxu Dou;Jean-Chrisophe Pignon;Toni K Choueiri;Sabina Signoretti;Jun S Liu;Xiaole Shirley Liu;

10.1101/073395 — Bioinformatics — Posted on 2016-09-05

431 LoRTE: Detecting transposon-induced genomic variants using low coverage PacBio long read sequences

Jonathan Filee;Eric Disdero;

10.1101/073551 — Bioinformatics — Posted on 2016-09-05

432 A Multi-Crystal Method for Extracting Obscured Signal from Crystallographic Electron Density

Nicholas Pearce;Anthony Richard Bradley;Patrick Collins;Tobias Krojer;Radoslaw Nowak;Romain Talon;Brian D Marsden;Sebastian Kelm;Jiye Shi;Charlotte Deane;Frank von Delft;

10.1101/073411 — Biochemistry — Posted on 2016-09-05

433 GPhase: Greedy Approach for Accurate Haplotype Inferencing

Kshitij Tayal;Naveen Sivadasan;Rajgopal Srinivasan;

10.1101/073379 — Genomics — Posted on 2016-09-04

434 Range stability predicts lineage persistence in a morphologically cryptic ground squirrel species complex

Mark A Phuong;Ke Bi;Craig Moritz;

10.1101/073320 — Evolutionary Biology — Posted on 2016-09-04

435 Fossils matter: improved estimates of divergence times in Pinus reveal older diversification

Bianca Saladin;Andrew B Leslie;Rafael O Wueest;Glenn Litsios;Elena Conti;Nicolas Salamin;Niklaus E Zimmermann;

10.1101/073312 — Evolutionary Biology — Posted on 2016-09-04

436 High throughput sequencing of multiple amplicons for barcoding and integrative taxonomy

Perrine Cruaud;Jean-Yves Rasplus;Lillian Jennifer Rodriguez;Astrid Cruaud;

10.1101/073304 — Evolutionary Biology — Posted on 2016-09-04

437 Recent advances in the study of fine-scale population structure in humans

John Novembre;Benjamin M Peter;

10.1101/073221 — Evolutionary Biology — Posted on 2016-09-04

438 Wolbachia infections in Aedes aegypti differ markedly in their response to cyclical heat stress

Perran A Ross;Itsanun Wiwatanaratanabutr;Jason K Axford;Vanessa L White;Nancy M Endersby-Harshman;Ary A Hoffmann;

10.1101/073106 — Ecology — Posted on 2016-09-04

439 Pitfalls in Inferring Human Microbial Dynamics from Temporal Metagenomics Data

Hong-Tai Cao;Travis Gibson;Amir Bashan;Yang-Yu Liu;

10.1101/073254 — Bioinformatics — Posted on 2016-09-04

440 A Scalable Algorithm for Structure Identification of Complex Gene Regulatory Network from Temporal Expression Data

Shupeng Gui;Rui Chen;Liang Wu;Ji Liu;Hongyu Miao;

10.1101/073296 — Bioinformatics — Posted on 2016-09-04

441 An efficient electroporation protocol for the genetic modification of mammalian cells

Leonardo Chicaybam;Camila Barcelos;Barbara Peixoto;Mayra Carneiro;Cintia Gomez Limia;Patricia Redondo;Carla Lira;Flavio Paraguassu-Braga;Zilton Vasconcelos;Luciana Barros;Martin Bonamino;

10.1101/073387 — Molecular Biology — Posted on 2016-09-07

442 An efficient electroporation protocol for the genetic modification of mammalian cells

Leonardo Chicaybam;Camila Barcelos;Barbara Peixoto;Mayra Carneiro;Cintia Gomez Limia;Patricia Redondo;Carla Lira;Flavio Paraguassu-Braga;Zilton Vasconcelos;Luciana Barros;Martin Bonamino;

10.1101/073387 — Molecular Biology — Posted on 2016-09-04

443 Direct and Indirect Models for Protein Chemical Denaturation are Characteristic of Opposite Dynamic Properties

Liangzhong Lim;Linlin Miao;Jianxing Song;

10.1101/073346 — Biophysics — Posted on 2016-09-04

444 Decellularised Human Liver is too Heterogeneous for Designing a Generic ECM-mimic Hepatic Scaffold

Giorgio Mattei;Chiara Magliaro;Andrea Pirone;Arti Ahluwalia;

10.1101/073270 — Bioengineering — Posted on 2016-09-04

445 Network Modules Driving Plant Stress Response, Tolerance and Adaptation: A case study using Abscisic acid Induced Protein-protein Interactome of Arabidopsis thaliana

Khader Shameer;Mahantesha B Naika;Oommen K Mathew;Ramanathan Sowdhamini;

10.1101/073247 — Plant Biology — Posted on 2016-09-03

446 Real-time detection of PRT1-mediated ubiquitination via fluorescently labeled substrate probes

Augustin C Mot;Erik Prell;Maria Klecker;Christin Naumann;Frederik Faden;Bernhard Westermann;Nico Dissmeyer;

10.1101/062067 — Plant Biology — Posted on 2016-09-04

447 Real-time detection of PRT1-mediated ubiquitination via fluorescently labeled substrate probes

Augustin C Mot;Erik Prell;Maria Klecker;Christin Naumann;Frederik Faden;Bernhard Westermann;Nico Dissmeyer;

10.1101/062067 — Plant Biology — Posted on 2016-09-03

448 Gene expression analysis provides insight into the physiology of the important staple food crop cassava

Mark C Wilson;Andrew M Mutka;Aaron W Hummel;Jeffrey Berry;Raj Deepika Chauhan;Anupama Vijayaraghavan;Nigel J Taylor;Daniel F Voytas;Daniel H. Chitwood;Rebecca S Bart;

10.1101/073213 — Plant Biology — Posted on 2016-09-03

449 Accurate De Novo Prediction of Protein Contact Map by Ultra-Deep Learning Model

Sheng Wang;Siqi Sun;Zhen Li;Renyu Zhang;Jinbo Xu;

10.1101/073239 — Bioinformatics — Posted on 2016-09-16

450 Accurate De Novo Prediction of Protein Contact Map by Ultra-Deep Learning Model

Sheng Wang;Siqi Sun;Zhen Li;Renyu Zhang;Jinbo Xu;

10.1101/073239 — Bioinformatics — Posted on 2016-09-15

451 Accurate De Novo Prediction of Protein Contact Map by Ultra-Deep Learning Model

Sheng Wang;Siqi Sun;Zhen Li;Renyu Zhang;Jinbo Xu;

10.1101/073239 — Bioinformatics — Posted on 2016-09-06

452 Accurate De Novo Prediction of Protein Contact Map by Ultra-Deep Learning Model

Sheng Wang;Siqi Sun;Zhen Li;Renyu Zhang;Jinbo Xu;

10.1101/073239 — Bioinformatics — Posted on 2016-09-03

453 A Novel Clustering Method for Patient Stratification

Hongfu Liu;Rui Zhao;Hongsheng Fang;Feixiong Cheng;Yun Fu;Yang-Yu Liu;

10.1101/073189 — Bioinformatics — Posted on 2016-09-03

454 Zika virus infection as a cause of congenital brain abnormalities and Guillain-Barre syndrome: systematic review

Fabienne Krauer;Maurane Riesen;Ludovic Reveiz;Olufemi T Oladapo;Ruth Martinez-Vega;Teegwende V Porgo;Anina Haefliger;Nathalie J Broutet;Nicola Low;WHO Zika Causality Working Group;

10.1101/073098 — Epidemiology — Posted on 2016-09-06

455 Zika virus infection as a cause of congenital brain abnormalities and Guillain-Barre syndrome: systematic review

Fabienne Krauer;Maurane Riesen;Ludovic Reveiz;Olufemi T Oladapo;Ruth Martinez-Vega;Teegwende V Porgo;Anina Haefliger;Nathalie J Broutet;Nicola Low;WHO Zika Causality Working Group;

10.1101/073098 — Epidemiology — Posted on 2016-09-02

456 Learning improves conscious access at the bottom, but not the top: Reverse hierarchical effects in perceptual learning and metacognition

Benjamin Chen;Matthew Mundy;Naotsugu Tsuchiya;

10.1101/073130 — Neuroscience — Posted on 2016-09-02

457 Zika virus replication in the mosquito Culex quinquefasciatus in Brazil

Duschinka R.D. Guedes;Marcelo H.S. Paiva;Mariana M.A. Donato;Priscilla P. Barbosa;Larissa Krokovsky;Sura W. dos S. Rocha;Karina L.A. Saraiva;Monica M. Crespo;Rosangela M.R. Barbosa;Claudia M.F. Oliveira;Maria A.V. Melo-Santos;Lindomar Pena;Marli T. Cordeiro;Rafael F. de O. Franca;Andre L.D. de Oliveira;Walter S. Leal;Christina A. Peixoto;Constancia F.J. Ayres;

10.1101/073197 — Microbiology — Posted on 2016-09-02

458 Trends in DNA methylation with age replicate across diverse human populations

Shyamalika Gopalan;Oana Carja;Maud Fagny;Etienne Patin;Justin W Myrick;Lisa McEwen;Sarah M Mah;Michael S Kobor;Alain Froment;Marcus W Feldman;Lluis Quintana-Murci;Brenna M Henn;

10.1101/073171 — Genomics — Posted on 2016-09-02

459 Using high-resolution variant frequencies to empower clinical genome interpretation

Nicola Whiffin;Eric Minikel;Roddy Walsh;Anne O'Donnell-Luria;Konrad Karczewski;Alexander Y Ing;Paul J R Barton;Birgit Funke;Stuart A Cook;Daniel G MacArthur;James S Ware;

10.1101/073114 — Genomics — Posted on 2016-09-02

460 Reductive Analytics on Big MS Data leads to tremendous reduction in time for peptide deduction

Muaaz Gul Awan;Fahad Saeed;

10.1101/073064 — Bioinformatics — Posted on 2016-09-02

461 Virus genomes reveal the factors that spread and sustained the West African Ebola epidemic.

Gytis Dudas;Luiz Max Carvalho;Trevor Bedford;Andrew J Tatem;Guy Baele;Nuno Faria;Daniel Park;Jason Ladner;Armando Arias;Danny Asogun;Filip Bielejec;Sarah Caddy;Matt Cotten;Jonathan Dambrozio;Simon Dellicour;Antonino Di Caro;Joseph Diclaro;Sophie Duraffour;Mike Elmore;Lawrence Fakoli;Merle Gilbert;Sahr M Gevao;Stephen Gire;Adrianne Gladden-Young;Andreas Gnirke;Augustine Goba;Donald Grant;Bart Haagmans;Julian Hiscox;Umaru Jah;Brima Kargbo;Jeffrey Kugelman;Di Liu;Jia Lu;Christine Malboeuf;Suzanne Mate;David Matthews;Christian Matranga;Luke Meredith;James Qu;Joshua Quick;Susan Pas;My Phan;Georgios

10.1101/071779 — Epidemiology — Posted on 2016-09-16

462 Virus genomes reveal the factors that spread and sustained the West African Ebola epidemic.

10.1101/071779 — Epidemiology — Posted on 2016-09-07

463 Virus genomes reveal the factors that spread and sustained the West African Ebola epidemic.

10.1101/071779 — Epidemiology — Posted on 2016-09-02

464 Virus genomes reveal the factors that spread and sustained the West African Ebola epidemic.

10.1101/071779 — Epidemiology — Posted on 2016-09-02

465 Ankyrin G membrane partners drive the establishment and maintenance of the axon initial segment

Christophe Leterrier;Nadine Clerc;Fanny Rueda-Boroni;Audrey Montersino;Bénédicte Dargent;Francis Castets;

10.1101/073163 — Neuroscience — Posted on 2016-09-02

466 Sexual dimorphism in the Drosophila metabolome increases throughout development

Fiona C Ingleby;Edward H Morrow;

10.1101/073148 — Physiology — Posted on 2016-09-02

467 Comprehensive Analysis of Two Shank3 and the Cacna1c Mouse Models of Autism Spectrum Disorder

Patricia A Kabitzke;Daniela Brunner;Dansha He;Pamela A Fazio;Kimberly Cox;Jane Sutphen;Lucinda Thiede;Emily Sabath;Taleen Hanania;Vadim Alexandrov;Randall Rasmusson;Will Spooren;Anirvan Ghosh;Pamela Feliciano;Barbara Biemans;Marta Benedetti;Alice Luo Clayton;

10.1101/068866 — Animal Behavior and Cognition — Posted on 2016-09-02

468 The visual white matter: The application of diffusion MRI and fiber tractography to vision science

Ariel Rokem;Hiromasa Takemura;Andrew Bock;K. Suzanne Scherf;Marlene Behrmann;Brian Wandell;Ione Fine;Holly Bridge;Franco Pestilli;

10.1101/072793 — Neuroscience — Posted on 2016-09-02

469 Natural Variation in Arabidopsis Cvi-0 Accession Uncovers Regulation of Guard Cell CO2 Signaling by MPK12

Liina Jakobson;Lauri Vaahtera;Kadri Tõldsepp;Maris Nuhkat;Cun Wang;Yuh-Shuh Wang;Hanna Hõrak;Ervin Valk;Priit Pechter;Yana Sindarovska;Jing Tang;Chuanlei Xiao;Yang Xu;Ulvi Gerst Talas;Maido Remm;Saijaliisa Kangasjärvi;M. Rob G. Roelfsema;Honghong Hu;Jaakko Kangasjärvi;Mart Loog;Julian I. Schroeder;Hannes Kollist;Mikael Brosché;

10.1101/073015 — Plant Biology — Posted on 2016-09-01

470 MUSCLES OF FACIAL EXPRESSION IN EXTINCT SPECIES OF THE GENUS HOMO

Arturo Tozzi;

10.1101/072884 — Paleontology — Posted on 2016-09-01

471 Activity of the C. elegans egg-laying behavior circuit is controlled by competing activation and feedback inhibition

Kevin Collins;Addys Bode;Robert W. Fernandez;Jessica E. Tanis;Jacob Brewer;Matthew Creamer;Michael R. Koelle;

10.1101/073049 — Neuroscience — Posted on 2016-09-01

472 The House Fly Y Chromosome is Young and Undifferentiated from its Ancient X Chromosome Partner

Richard Meisel;Christopher A Gonzales;Hoang Luu;

10.1101/073023 — Genomics — Posted on 2016-09-01

473 Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections

Chao Tian;David A. Hinds;Bethann S. Hromatka;Amy K Kiefer;Nicholas Eriksson;Joyce Y. Tung;

10.1101/073056 — Genetics — Posted on 2016-09-09

474 Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections

Chao Tian;David A. Hinds;Bethann S. Hromatka;Amy K Kiefer;Nicholas Eriksson;Joyce Y. Tung;

10.1101/073056 — Genetics — Posted on 2016-09-01

475 Selection on heterozygosity drives adaptation in intra- and interspecific hybrids

Caiti S. Smukowski Heil;Christopher G. DeSevo;Dave A. Pai;Cheryl M. Tucker;Margaret L. Hoang;Maitreya J. Dunham;

10.1101/073007 — Evolutionary Biology — Posted on 2016-09-01

476 CIViC: A knowledgebase for expert-crowdsourcing the clinical interpretation of variants in cancer.

Malachi Griffith;Nicholas C Spies;Kilannin Krysiak;Adam C Coffman;Joshua F McMichael;Benjamin J Ainscough;Damian T Rieke;Arpad M Danos;Lynzey Kujan;Cody A Ramirez;Alex H Wagner;Zachary L Skidmore;Connor J Liu;Martin R Jones;Rachel L Bilski;Robert Lesurf;Erica K Barnell;Nakul M Shah;Melika Bonakdar;Lee Trani;Matthew Matlock;Avinash Ramu;Katie M Campbell;Gregory C Spies;Aaron P Graubert;Karthik Gangavarapu;James M Eldred;David E Larson;Jason R Walker;Benjamin M Good;Chunlei Wu;Andrew I Su;Rodrigo Dienstmann;Steven JM Jones;Ron Bose;David H Spencer;Lukas D Wartman;Richard K Wilson;Elaine R Mardis

10.1101/072892 — Cancer Biology — Posted on 2016-09-01

477 CH···O Interactions Are Not the Cause of Trends in Reactivity and Secondary Kinetic Isotope Effects for Enzymatic SN2 Methyl Transfer Reactions

Jianyu Zhang;Judith P. Klinman;

10.1101/071043 — Biochemistry — Posted on 2016-09-01

478 Regulation of cancer epigenomes with a histone-binding synthetic transcription factor

Karmella A. Haynes;David B. Nyer;Daniel Vargas;Caroline Hom;

10.1101/072975 — Synthetic Biology — Posted on 2016-09-01

479 Regions of very low H3K27me3 partition the Drosophila genome into topological domains

Sherif El-Sharnouby;Bettina Fischer;Jose Paolo Magbanua;Benjamin Umans;Rosalyn Flower;Siew Woh Choo;Steven Russell;Rob White;

10.1101/072900 — Genomics — Posted on 2016-09-01

480 Dissecting the genetics of complex traits using summary association statistics

Bogdan Pasaniuc;Alkes L Price;

10.1101/072934 — Genetics — Posted on 2016-09-01

481 Integrating gene expression with summary association statistics to identify susceptibility genes for 30 complex traits

Nicholas Mancuso;Huwenbo Shi;Page Goddard;Gleb Kichaev;Alexander Gusev;Bogdan Pasaniuc;

10.1101/072967 — Genetics — Posted on 2016-09-01

482 Selective constraints on coding sequences of nervous system genes are a major determinant of duplicate gene retention in vertebrates

Julien Roux;Jialin Liu;Marc Robinson-Rechavi;

10.1101/072959 — Evolutionary Biology — Posted on 2016-09-20

483 Selective constraints on coding sequences of nervous system genes are a major determinant of duplicate gene retention in vertebrates

Julien Roux;Jialin Liu;Marc Robinson-Rechavi;

10.1101/072959 — Evolutionary Biology — Posted on 2016-09-01

484 Perpendicular axes of incipient speciation generated by mitochondrial introgression

Hernan E Morales;Paul Sunnucks;Leo Joseph;Alexandra Pavlova;

10.1101/072942 — Evolutionary Biology — Posted on 2016-09-01

485 Contig annotation tool CAT robustly classifies assembled metagenomic contigs and long sequences

Diego D. Cambuy;Felipe H. Coutinho;Bas E. Dutilh;

10.1101/072868 — Bioinformatics — Posted on 2016-09-01

486 eIF3 plays distinct roles at the mRNA entry and exit channels of the ribosomal preinitiation complex

Colin Echeverría Aitken;Petra Beznosková;Vladislav Vlčkova;Wen-Ling Chiu;Fujun Zhou;Leoš Shivaya Valášek;Alan G Hinnebusch;Jon R Lorsch;

10.1101/072702 — Biochemistry — Posted on 2016-09-01

487 eIF3 plays distinct roles at the mRNA entry and exit channels of the ribosomal preinitiation complex

Colin Echeverría Aitken;Petra Beznosková;Vladislav Vlčkova;Wen-Ling Chiu;Fujun Zhou;Leoš Shivaya Valášek;Alan G Hinnebusch;Jon R Lorsch;

10.1101/072702 — Biochemistry — Posted on 2016-09-01

488 Quorum sensing modulatory effect of sound stimulation on Serratia marcescens and Pseudomonas aeruginosa

Vijay Kothari;Pooja Patel;Chinmayi Joshi;Brijesh Mishra;Shashikant Dubey;Milan Mehta;

10.1101/072850 — Microbiology — Posted on 2016-09-01

489 Genes mirror migrations and cultures in prehistoric Europe - a population genomic perspective

Torsten Günther;Mattias Jakobsson;

10.1101/072926 — Evolutionary Biology — Posted on 2016-09-01

490 Population-genomic inference of the strength and timing of selection against gene flow

Simon Aeschbacher;Jessica Packard Selby;John H. Willis;Graham Coop;

10.1101/072736 — Evolutionary Biology — Posted on 2016-09-14

491 Panpulmonate transcriptomes reveal candidate genes involved in the adaptation to freshwater and terrestrial habitats in gastropods

Pedro Eduardo Romero;Barbara Feldmeyer;Markus Pfenninger;

10.1101/072389 — Evolutionary Biology — Posted on 2016-09-02

492 Zika infection of neural progenitor cells perturbs transcription in neurodevelopmental pathways

Lynn Yi;Harold Pimentel;Lior Pachter;

10.1101/072439 — Bioinformatics — Posted on 2016-09-02

493 Insects and associated arthropods analyzed during medicolegal death investigations in Harris County, Texas, USA: January 2013- April 2016

Michelle R Sanford;

10.1101/071027 — Zoology — Posted on 2016-09-08

494 What the Success of Brain Imaging Implies about the Neural Code

Olivia Guest;Bradley C Love;

10.1101/071076 — Neuroscience — Posted on 2016-09-09

495 Network Identification Methods

Young Hwan Chang;Claire Tomlin;

10.1101/071217 — Systems Biology — Posted on 2016-09-26

496 Neuronal gamma-band synchronization regulated by instantaneous modulations of the oscillation frequency

Eric Lowet;Mark Roberts;Alina Peter;Bart Gips;Peter De Weerd;

10.1101/070672 — Neuroscience — Posted on 2016-09-25

497 MINT: A multivariate integrative method to identify reproducible molecular signatures across independent experiments and platforms

Florian Rohart;Aida Eslami;Nicholas Matigian;Stephanie Bougeard;Kim-Anh Le Cao;

10.1101/070813 — Bioinformatics — Posted on 2016-09-20

498 On the estimation errors of KM and V from time-course experiments using the Michaelis-Menten equation

Wylie Stroberg;Santiago Schnell;

10.1101/068015 — Biochemistry — Posted on 2016-09-06

499 Evolutionary thrift: mycobacteria repurpose plasmid diversity during adaptation of type VII secretion systems

Tatum D Mortimer;Alexandra M. Weber;Caitlin S. Pepperell;

10.1101/067207 — Evolutionary Biology — Posted on 2016-09-30

500 Drosophila Mutants that Are Motile but Respond Poorly to All Stimuli Tested

Lar L Vang;Julius Adler;

10.1101/066423 — Animal Behavior and Cognition — Posted on 2016-09-29

501 Drosophila Mutants that Are Motile but Respond Poorly to All Stimuli Tested

Lar L Vang;Julius Adler;

10.1101/066423 — Animal Behavior and Cognition — Posted on 2016-09-28

502 Mind over matter: A perceptual decision bias toward filled-in stimuli in the blind spot

Benedikt V Ehinger;Katja Häusser;José Ossandón;Peter König;

10.1101/066217 — Neuroscience — Posted on 2016-09-13

503 Mind over matter: A perceptual decision bias toward filled-in stimuli in the blind spot

Benedikt V Ehinger;Katja Häusser;José Ossandón;Peter König;

10.1101/066217 — Neuroscience — Posted on 2016-09-11

504 Genetic heterogeneity in depressive symptoms following the death of a spouse: Polygenic score analysis of the US Health and Retirement Study

Ben W Domingue;Hexuan Liu;Aysu Okbay;Daniel W. Belsky;

10.1101/065847 — Genetics — Posted on 2016-09-21

505 Genetic heterogeneity in depressive symptoms following the death of a spouse: Polygenic score analysis of the US Health and Retirement Study

Ben W Domingue;Hexuan Liu;Aysu Okbay;Daniel W. Belsky;

10.1101/065847 — Genetics — Posted on 2016-09-21

506 A generalized quantitative antibody homeostasis model: regulation of B-cell development by BCR saturation and novel insights into bone marrow function

Jozsef Prechl;

10.1101/065730 — Immunology — Posted on 2016-09-16

507 A generalized quantitative antibody homeostasis model: antigen saturation, natural antibodies and a quantitative antibody network

Jozsef Prechl;

10.1101/065748 — Immunology — Posted on 2016-09-16

508 Mosaic Mutations in Blood DNA Sequence Are Associated with Solid Tumor Cancers

Mykyta Artomov;Manuel A. Rivas;Giulio Genovese;Mark J. Daly;

10.1101/065821 — Genetics — Posted on 2016-09-06

509 The evolutionary origin of bilaterian smooth and striated myocytes

Thibaut Brunet;Antje H. L. Fischer;Patrick R. H. Steinmetz;Antonella Lauri;Paola Bertucci;Detlev Arendt;

10.1101/064881 — Evolutionary Biology — Posted on 2016-09-07

510 Impact of Sample Type and DNA Isolation Procedure on Genomic Inference of Microbiome Composition

Berith E Knudsen;Lasse Bergmark;Patrick Munk;Oksana Lukjancenko;Anders Prieme;Frank M Aarestrup;Sunje J Pamp;

10.1101/064394 — Microbiology — Posted on 2016-09-19

511 The mitotic spindle in the one-cell C. elegans embryo is positioned with high precision and stability

Jacques Pecreaux;Stephanie Redemann;Zahraa Alayan;Benjamin Mercat;Sylvain Pastezeur;Carlos Garzon Coral;Anthony A Hyman;Jonathon Howard;

10.1101/063529 — Biophysics — Posted on 2016-09-13

512 Benzoate and Salicylate Tolerant Strains Lose Antibiotic Resistance during Laboratory Evolution of Escherichia coli K-12

Kaitlin E Creamer;Frederick S Ditmars;Preston J Basting;Karina S Kunka;Issam N Hamdallah;Sean P Bush;Zachary Scott;Amanda He;Stephanie R Penix;Alexandra S Gonzales;Elizabeth K Eder;Dominic Camperchioli;Adama Berndt;Michelle W Clark;Kerry A Rouhier;Joan L Slonczewski;

10.1101/063271 — Microbiology — Posted on 2016-09-28

513 Origins of pandemic clones from environmental gene pools

B. Jesse Shapiro;Ines Levade;Gabriela Kovacikova;Ronald K. Taylor;Salvador Almagro-Moreno;

10.1101/063115 — Microbiology — Posted on 2016-09-12

514 Measuring experimental cyclohexane-water distribution coefficients for the SAMPL5 challenge

Ariën S Rustenburg;Justin Dancer;Baiwei Lin;Jianwen A. Feng;Daniel F. Ortwine;David L. Mobley;John D. Chodera;

10.1101/063081 — Biophysics — Posted on 2016-09-28

515 A nonsense mutation in the COL7A1 gene causes epidermolysis bullosa in Vorderwald cattle

Hubert Pausch;Simon Ammermueller;Christine Wurmser;Henning Hamann;Jens Tetens;Cord Droegemueller;Ruedi Fries;

10.1101/062968 — Genomics — Posted on 2016-09-23

516 Extrinsic repair of injured dendrites as a paradigm for regeneration by fusion

Meital Oren-Suissa;Tamar Gattegno;Veronika Kravtsov;Benjamin Podbilewicz;

10.1101/062372 — Neuroscience — Posted on 2016-09-12

517 A simple proposal for the publication of journal citation distributions

Vincent Lariviere;Veronique Kiermer;Catriona J MacCallum;Marcia McNutt;Mark Patterson;Bernd Pulverer;Sowmya Swaminathan;Stuart Taylor;Stephen Curry;

10.1101/062109 — Scientific Communication and Education — Posted on 2016-09-11

518 Lognormal firing rate distribution reveals prominent fluctuation-driven regime in spinal motor networks

Peter C. Petersen;Rune W. Berg;

10.1101/062257 — Neuroscience — Posted on 2016-09-06

519 Immunoecology of species with alternative reproductive tactics and strategies

George A Lozano;Albert F. H. Ros;

10.1101/062083 — Evolutionary Biology — Posted on 2016-09-07

520 HydDB: A web tool for hydrogenase classification and analysis

Dan Sondergaard;Christian N.S. Pedersen;Chris Greening;

10.1101/061994 — Bioinformatics — Posted on 2016-09-16

521 Tissue Resolved, Gene Structure Refined Equine Transcriptome

Tamer A. Mansour;Erica Y Scott;Carrie J Finno;Rebecca R Bellone;Michael J. Mienaltowski;M Cecilia Penedo;Pablo J Ross;Stephanie J. Valberg;James D Murray;C. Titus Brown;

10.1101/061952 — Genomics — Posted on 2016-09-23

522 The regulatable MAL32 promoter in S. cerevisiae: characteristics and tools to facilitate its use

Matthias Meurer;Veronika Chevyreva;Bram Cerulus;Michael Knop;

10.1101/061127 — Cell Biology — Posted on 2016-09-02

523 A neuropeptide modulates sensory perception in the entomopathogenic nematode Steinernema carpocapsae

Robert Morris;Leonie Wilson;Neil D Warnock;Daniel Carrizo;Deborah Cox;Matthew Sturrock;Kilian McGrath;Aaron G Maule;Johnathan Dalzell;

10.1101/061101 — Animal Behavior and Cognition — Posted on 2016-09-15

524 Prioritizing 2nd and 3rd order interactions via support vector ranking using sensitivity indices on time series Wnt measurements - Part B

shriprakash sinha;

10.1101/060228 — Systems Biology — Posted on 2016-09-22

525 Suboptimality in perception

Dobromir Rahnev;Rachel Denison;

10.1101/060194 — Neuroscience — Posted on 2016-09-16

526 Evolutionary genomics of peach and almond domestication

Dianne Velasco;Josh Hough;Mallikarjuna Aradhya;Jeffrey Ross-Ibarra;

10.1101/060160 — Evolutionary Biology — Posted on 2016-09-27

527 Meta population modelling of narwhals in East Canada and West Greenland

Lars Witting;

10.1101/059691 — Ecology — Posted on 2016-09-30

528 HIV-1 gag-pol mRNA localization regulates the site of virion assembly

Jordan T Becker;Nathan M Sherer;

10.1101/057299 — Cell Biology — Posted on 2016-09-19

529 Characterizing the Non-Normal Distribution of Flow Cytometry Measurements from Transiently Expressed Constructs in Mammalian Cells

Peter F McLean;Christina D Smolke;Marc Salit;

10.1101/057950 — Synthetic Biology — Posted on 2016-09-30

530 Biologically plausible learning in recurrent neural networks for flexible cognitive tasks

Thomas Miconi;

10.1101/057729 — Neuroscience — Posted on 2016-09-29

531 Real-time Zika risk assessment in the United States

Lauren A Castro;Spencer J Fox;Xi Chen;Kai Liu;Steve E Bellan;Nedialko B Dimitrov;Alison P Galvani;Lauren A Meyers;

10.1101/056648 — Epidemiology — Posted on 2016-09-07

532 A Common Class of Transcripts with 5′-Intron Depletion, Distinct Early Coding Sequence Features, and N1-Methyladenosine Modification

Can Cenik;Hon Nian Chua;Guramrit Singh;Abdalla Akef;Michael P Snyder;Alexander F Palazzo;Melissa J Moore;Frederick P Roth;

10.1101/057455 — Bioinformatics — Posted on 2016-09-06

533 Overlap of movement planning and movement execution reduces reaction time by up to 100ms.

Jean-Jacques Orban de Xivry;Valery Legrain;Philippe LEFEVRE;

10.1101/039842 — Neuroscience — Posted on 2016-09-07

534 The human thalamus is an integrative hub for functional brain networks

Kai Hwang;Maxwell A. Bertolero;William Liu;Mark D'Esposito;

10.1101/056630 — Neuroscience — Posted on 2016-09-22

535 PRDM9 forms a multiprotein complex tethering recombination hotspots to the chromosomal axis

Emil D Parvanov;Hui Tian;Timothy Billings;Ruth L Saxl;Catrina Spruce;Rakesh Aithal;Lumir Krejci;Kenneth Paigen;Petko M Petkov;

10.1101/056713 — Cell Biology — Posted on 2016-09-16

536 Biogeographic Ancestry and Socioeconomic Outcomes in the Americas: a Meta-analysis

Emil O. W. Kirkegaard;Mingrui Wang;John Fuerst;

10.1101/055681 — Scientific Communication and Education — Posted on 2016-09-12

537 Kinematic analysis of cell lineage reveals coherent and robust mechanical deformation patterns in zebrafish gastrulation

David Pastor-Escuredo;Benoit Lombardot;Thierry Savy;Adeline Boyreau;Jose M. Goicolea;Andres Santos;Paul Bourgine;Juan C. del Alamo;Nadine Peyrieras;Maria J. Ledesma-Carbayo;

10.1101/054353 — Systems Biology — Posted on 2016-09-21

538 Synaptonemal complex components are required for meiotic checkpoint function in C. elegans

Tisha Bohr;Guinevere Ashley;Evan Eggleston;Kyra Firestone;Needhi Bhalla;

10.1101/052977 — Genetics — Posted on 2016-09-01

539 Reconstitution of three-phase microtubule polymerisation dynamics

Takashi Moriwaki;Gohta Goshima;

10.1101/051672 — Cell Biology — Posted on 2016-09-10

540 Adaptively introgressed Neandertal haplotype at the OAS locus functionally impacts innate immune responses in humans.

Aaron J Sams;Anne Dumaine;Johann Nédélec;Vania Yotova;Caroline Alfieri;Jerome E Tanner;Philipp W Messer;Luis B Barreiro;

10.1101/051466 — Evolutionary Biology — Posted on 2016-09-12

541 Naïve chicks prefer hollow objects

Elisabetta Versace;Jana Schill;Andrea Maria Nencini;Giorgio Vallortigara;

10.1101/050799 — Animal Behavior and Cognition — Posted on 2016-09-19

542 Amyloid β-peptides interfere with mitochondrial preprotein import competence by a co-aggregation process

Giovanna Cenini;Cornelia Rüb;Michael Bruderek;Wolfgang Voos;

10.1101/050617 — Cell Biology — Posted on 2016-09-14

543 The Pseudomonas aeruginosa PSL polysaccharide is a social but non-cheatable trait in biofilms

Yasuhiko Irie;Aled Roberts;Kasper N Kragh;Vernita D Gordon;Jamie Hutchison;Rosalind J Allen;Gavin Melaugh;Thomas Bjarnsholt;Stuart A West;Stephen P Diggle;

10.1101/049783 — Microbiology — Posted on 2016-09-29

544 Robust cell tracking in epithelial tissues through identification of maximum common subgraphs

Jochen Kursawe;Rémi Bardenet;Jeremiah J Zartman;Ruth E Baker;Alexander George Fletcher;

10.1101/049551 — Bioengineering — Posted on 2016-09-08

545 On the (un-)predictability of a large intragenic fitness landscape

Claudia Bank;Sebastian Matuszewski;Ryan T. Hietpas;Jeffrey D. Jensen;

10.1101/048769 — Evolutionary Biology — Posted on 2016-09-25

546 Meta-GWAS Accuracy and Power (MetaGAP) calculator shows that hiding heritability is partially due to imperfect genetic correlations across studies

R. de Vlaming;A. Okbay;C.A. Rietveld;M. Johannesson;P.K.E. Magnusson;A.G. Uitterlinden;F.J.A. van Rooij;A. Hofman;P.J.F. Groenen;A.R. Thurik;P.D. Koellinger;

10.1101/048322 — Genetics — Posted on 2016-09-13

547 Effects of variable mutation rates and epistasis on the distribution of allele frequencies in humans

Arbel Harpak;Anand Bhaskar;Jonathan K Pritchard;

10.1101/048421 — Genomics — Posted on 2016-09-26

548 Effects of variable mutation rates and epistasis on the distribution of allele frequencies in humans

Arbel Harpak;Anand Bhaskar;Jonathan K Pritchard;

10.1101/048421 — Genomics — Posted on 2016-09-25

549 The Interaction of Genotype and Environment Determines Variation in the Maize Kernel Ionome

Alexandra B Asaro;Gregory R Ziegler;Cathrine Ziyomo;Owen A Hoekenga;Brian P Dilkes;Ivan Baxter;

10.1101/048173 — Plant Biology — Posted on 2016-09-01

550 Sharing brain mapping statistical results with the neuroimaging data model

Camille Maumet;Tibor Auer;Alexander Bowring;Gang Chen;Samir Das;Guillaume Flandin;Satrajit Ghosh;Tristan Glatard;Krzysztof J. Gorgolewski;Karl G. Helmer;Mark Jenkinson;David Keator;Nolan Nolan Nichols;Jean-Baptiste Poline;Richard Reynolds;Vanessa Sochat;Jessica Turner;Thomas E. Nichols;

10.1101/041798 — Neuroscience — Posted on 2016-09-15

551 Microevolution of Bank Voles (Myodes glareolus) at Neutral and Immune Related Genes During Multiannual Dynamic Cycles: Consequences for Puumala hantavirus Epidemiology

Adelaide Dubois;Maxime Galan;Jean-Francois Cosson;Bertrand Gauffre;Heikki Henttonen;Jukka Niemimaa;Maria Razzauti;Liina Voutilainen;Renaud Vitalis;Emmanuel Guivier;Nathalie Charbonnel;

10.1101/048082 — Evolutionary Biology — Posted on 2016-09-16

552 Comparison of Clustering Methods for High-Dimensional Single-Cell Flow and Mass Cytometry Data

Lukas M. Weber;Mark D. Robinson;

10.1101/047613 — Bioinformatics — Posted on 2016-09-08

553 Redox potential as a master variable controlling pathways of metal reduction by Geobacter sulfurreducens

Caleb E Levar;Colleen L Hoffman;Aubrey J Dunshee;Brandy M Toner;Daniel R Bond;

10.1101/043059 — Microbiology — Posted on 2016-09-16

554 Redox potential as a master variable controlling pathways of metal reduction by Geobacter sulfurreducens

Caleb E Levar;Colleen L Hoffman;Aubrey J Dunshee;Brandy M Toner;Daniel R Bond;

10.1101/043059 — Microbiology — Posted on 2016-09-16

555 Zfp423 regulates Sonic hedgehog signaling via primary cilium function

CHEN-JEI HONG;Bruce A. Hamilton;

10.1101/046961 — Genetics — Posted on 2016-09-16

556 Genomic evidence for population-specific responses to coevolving parasites in a New Zealand freshwater snail

Laura Bankers;Peter Fields;Kyle E. McElroy;Jeffrey Boore;John M. Logsdon;Maurine Neiman;

10.1101/045674 — Evolutionary Biology — Posted on 2016-09-12

557 Integrating tissue specific mechanisms into GWAS summary results

Alvaro Barbeira;Scott P Dickinson;Jason M Torres;Eric S Torstenson;Jiamao Zheng;Heather E Wheeler;Kaanan P Shah;Todd Edwards;GTEx Consortium;Dan Nicolae;Nancy J Cox;Hae Kyung Im;

10.1101/045260 — Bioinformatics — Posted on 2016-09-28

558 Controlling for confounding effects in single cell RNA sequencing studies using both control and target genes

Mengjie Chen;Xiang Zhou;

10.1101/045070 — Genomics — Posted on 2016-09-14

559 Synaptic Transmission Parallels Neuromodulation in a Central Food-Intake Circuit

Philipp Schlegel;Michael J Texada;Anton Miroschnikow;Andreas Schoofs;Sebastian Hückesfeld;Marc Peters;Casey M Schneider-Mizell;Haluk Lacin;Feng Li;Richard D Fetter;James W Truman;Albert Cardona;Michael J Pankratz;

10.1101/044990 — Neuroscience — Posted on 2016-09-29

560 Mechanisms for action prediction operate differently in observers with motor experience

Lincoln John Colling;William F Thompson;John Sutton;

10.1101/044438 — Neuroscience — Posted on 2016-09-11

561 Survey of the Heritability and Sparsity of Gene Expression Traits Across Human Tissues

Heather E Wheeler;Kaanan P Shah;Jonathon Brenner;Tzintzuni Garcia;Keston Aquino-Michaels;GTEx Consortium;Nancy J Cox;Dan L Nicolae;Hae Kyung Im;

10.1101/043653 — Genomics — Posted on 2016-09-08

562 Comprehensive discovery of subsample gene expression components by information explanation: therapeutic implications in cancer

Shirley Pepke;Greg Ver Steeg;

10.1101/043257 — Systems Biology — Posted on 2016-09-19

563 Diurnal variation of circulating interleukin-6 in humans: a meta-analysis

Gustav Nilsonne;Mats Lekander;Torbjörn Åkerstedt;John Axelsson;Michael Ingre;

10.1101/042507 — Immunology — Posted on 2016-09-19

564 Tunable bet hedging in yeast responses to osmotic stress

Yoshikazu Hirate;Samuel Bottani;Wyming Lee Pang;Suzannah Rutherford;

10.1101/039982 — Evolutionary Biology — Posted on 2016-09-02

565 DNA from dust: comparative genomics of large DNA viruses in field surveillance samples

Utsav Pandey;Andrew S Bell;Daniel W Renner;David Kennedy;Jacob T Shreve;Chris Cairns;Matthew Jones;Patricia Dunn;Andrew F Read;Moriah L Szpara;

10.1101/039479 — Microbiology — Posted on 2016-09-01

566 Translational plasticity facilitates the accumulation of nonsense genetic variants in the human population

Sujatha Jagannathan;Robert K. Bradley;

10.1101/038687 — Genetics — Posted on 2016-09-16

567 Auxin-induced expression divergence between Arabidopsis species likely originates within the TIR1/AFB-AUX/IAA-ARF module

Jana Trenner;Yvonne Poeschl;Jan Grau;Andreas Gogol-Döring;Marcel Quint;Carolin Delker;

10.1101/038422 — Plant Biology — Posted on 2016-09-06

568 Short template switch events explain mutation clusters in the human genome

Ari Löytynoja;Nick Goldman;

10.1101/038380 — Genomics — Posted on 2016-09-27

569 Signatures of positive selection and local adaptation to urbanization in white-footed mice (Peromyscus leucopus)

Stephen E Harris;Jason Munshi-South;

10.1101/038141 — Evolutionary Biology — Posted on 2016-09-15

570 IRNdb: The database of immunologically relevant non-coding RNAs.

Elena Denisenko;Daniel Ho;Ousman Tamgue;Mumin Ozturk;Harukazu Suzuki;Frank Brombacher;Reto Guler;Sebastian Schmeier;

10.1101/037911 — Immunology — Posted on 2016-09-25

571 Identification and Functional Characterization of Muscle Satellite Cells in Drosophila

RAJESH D. GUNAGE;Heinrich Reichert;K. VijayRaghavan;

10.1101/037838 — Developmental Biology — Posted on 2016-09-20

572 SC3 - consensus clustering of single-cell RNA-Seq data

Vladimir Yu. Kiselev;Kristina Kirschner;Michael T. Schaub;Tallulah Andrews;Andrew Yiu;Tamir Chandra;Kedar N Natarajan;Wolf Reik;Mauricio Barahona;Anthony R Green;Martin Hemberg;

10.1101/036558 — Bioinformatics — Posted on 2016-09-02

573 The Computational Nature of Memory Modification

Samuel J Gershman;Marie-H. Monfils;Kenneth A Norman;Yael Niv;

10.1101/036442 — Animal Behavior and Cognition — Posted on 2016-09-12

574 ŌvSim: a Simulation of the Population Dynamics of Mammalian Ovarian Follicles

Joshua Johnson;Xin Chen;Xiao Xu;John Emerson;

10.1101/034249 — Physiology — Posted on 2016-09-12

575 Hilbert-Schmidt and Sobol sensitivity indices for static and time series Wnt signaling measurements in colorectal cancer - Part A

shriprakash sinha;

10.1101/035519 — Systems Biology — Posted on 2016-09-29

576 A Critical Review on the Use of Support Values in Tree Viewers and Bioinformatics Toolkits

Lucas Czech;Jaime Huerta-Cepas;Alexandros Stamatakis;

10.1101/035360 — Evolutionary Biology — Posted on 2016-09-07

577 State aggregation for fast likelihood computations in molecular evolution

Iakov I Davydov;Marc Robinson-Rechavi;Nicolas Salamin;

10.1101/035063 — Bioinformatics — Posted on 2016-09-28

578 State aggregation for fast likelihood computations in molecular evolution

Iakov I Davydov;Marc Robinson-Rechavi;Nicolas Salamin;

10.1101/035063 — Bioinformatics — Posted on 2016-09-07

579 LORENZ SYSTEM IN THERMODYNAMICAL MODELLING OF LEUKEMIA

Igor V Alexeev;

10.1101/034132 — Cancer Biology — Posted on 2016-09-30

580 LORENZ SYSTEM IN THERMODYNAMICAL MODELLING OF LEUKEMIA

Igor V Alexeev;

10.1101/034132 — Cancer Biology — Posted on 2016-09-27

581 LORENZ SYSTEM IN THERMODYNAMICAL MODELLING OF LEUKEMIA

Igor V Alexeev;

10.1101/034132 — Cancer Biology — Posted on 2016-09-23

582 LORENZ SYSTEM IN THERMODYNAMICAL MODELLING OF LEUKEMIA

Igor V Alexeev;

10.1101/034132 — Cancer Biology — Posted on 2016-09-14

583 Linking stimuli and behavior with fast near-whole brain recordings in adult Drosophila

Sophie Aimon;Takeo Katsuki;Logan Grosenick;Michael Broxton;Karl Deisseroth;Terrence J. Sejnowski;Ralph J Greenspan;

10.1101/033803 — Neuroscience — Posted on 2016-09-12

584 Multidimensional Heritability Analysis of Neuroanatomical Shape

Tian Ge;Martin Reuter;Anderson M. Winkler;Avram J. Holmes;Phil H. Lee;Lee S. Tirrell;Joshua L. Roffman;Randy L. Buckner;Jordan W. Smoller;Mert R. Sabuncu;

10.1101/033407 — Neuroscience — Posted on 2016-09-20

585 Estimating error models for whole genome sequencing using mixtures of Dirichlet-multinomial distributions

Steven H Wu;Rachel S Schwartz;David J Winter;Don Conrad;Reed A Cartwright;

10.1101/031724 — Genomics — Posted on 2016-09-20

586 Distinguishing contemporary hybridization from past introgression with post-genomic ancestry-informative SNPs in strongly differentiated Ciona species

Sarah Bouchemousse;Cathy Haag-Liautard;Nicolas Bierne;Frederique Viard;

10.1101/030346 — Evolutionary Biology — Posted on 2016-09-21

587 TP53 copy number expansion correlates with the evolution of increased body size and an enhanced DNA damage response in elephants

Michael Sulak;Lindsey Fong;Katelyn Mika;Sravanthi Chigurupati;Lisa Yon;Nigel P. Mongan;Richard D. Emes;Vincent J. Lynch;

10.1101/028522 — Genetics — Posted on 2016-09-06

588 Automated discovery of relationships, models and principles in ecology

Pedro Cardoso;Paulo AV Borges;Jose C Carvalho;Francois Rigal;Rosalina Gabriel;Jose Cascalho;Luis Correia;

10.1101/027839 — Ecology — Posted on 2016-09-26

589 Task learning reveals neural signatures of internal models in rodent prefrontal cortex

Abhinav Singh;Adrien Peyrache;Mark Humphries;

10.1101/027102 — Neuroscience — Posted on 2016-09-01

590 Construction of the third generation Zea mays haplotype map

Robert Bukowski;Xiaosen Guo;Yanli Lu;Cheng Zou;Bing He;Zhengqin Rong;Bo Wang;Dawen Xu;Bicheng Yang;Chuanxiao Xie;Longjiang Fan;Shibin Gao;Xun Xu;Gengyun Zhang;Yingrui Li;Yinping Jiao;John Doebley;Jeffrey Ross-Ibarra;Vince Buffalo;Cinta M Romay;Edward S Buckler;Yunbi Xu;Jinsheng Lai;Doreen Ware;Qi Sun;