bioRxiv directory

Karel Janko;Jan Pačes;Hilde Wilkinson-Herbots;Rui J Costa;Jan Röslein;Pavel Drozd;Nataliia Iakovenko;Jakub Rídl;Jan Kočí;Radka Reifová;Vēra Šlechtová;Lukáš Choleva;

10.1101/038299 — Evolutionary Biology — Posted on 2016-01-31

3 Compaction and segregation of sister chromatids via active loop extrusion

Anton Goloborodko;Maxim V. Imakaev;John F. Marko;Leonid A. Mirny;

10.1101/038281 — Biophysics — Posted on 2016-01-30

4 Compaction and segregation of sister chromatids via active loop extrusion

Anton Goloborodko;Maxim V. Imakaev;John F. Marko;Leonid A. Mirny;

10.1101/038281 — Biophysics — Posted on 2016-01-30

5 How transposons drive evolution of virulence in a fungal pathogen

Luigi Faino;Michael F. Seidl;Xiaoqian Shi-Kunne;Marc Pauper;Grardy C.M. van den Berg;Alexander H.J. Wittenberg;Bart P.H.J. Thomma;

10.1101/038315 — Evolutionary Biology — Posted on 2016-01-30

6 Non-linear tumor-immune interactions arising from spatial metabolic heterogeneity

Mark Robertson-Tessi;Robert J Gillies;Robert A Gatenby;Alexander RA Anderson;

10.1101/038273 — Cancer Biology — Posted on 2016-01-29

7 False Discovery Rates: A New Deal.

Matthew Stephens;

10.1101/038216 — Bioinformatics — Posted on 2016-01-29

8 Cell re-entry assays do not support models of pathogen- independent translocation of AvrM and AVR3a effectors into plant cells

Benjamin Petre;Michaela Kopischke;Alexandre Evrard;Silke Robatzek;Sophien Kamoun;

10.1101/038232 — Plant Biology — Posted on 2016-01-29

9 ELF3 polyQ variation in Arabidopsis thaliana reveals a PIF4-independent role in thermoresponsive flowering.

Maximilian O Press;Amy Lanctot;Christine Queitsch;

10.1101/038257 — Plant Biology — Posted on 2016-01-29

10 Human splicing diversity across the Sequence Read Archive

Abhinav Nellore;Andrew E Jaffe;Jean-Philippe Fortin;José Alquicira-Hernández;Leonardo Collado-Torres;Siruo Wang;Robert A Phillips;Nishika Karbhari;Kasper D Hansen;Ben Langmead;Jeffrey T Leek;

10.1101/038224 — Genomics — Posted on 2016-01-29

11 The genetic architecture of local adaptation II: The QTL landscape of water-use efficiency for foxtail pine (Pinus balfouriana Grev. & Balf.)

Andrew J Eckert;Douglas E Harwood;Brandon M Lind;Erin M Hobson;Annette Delfino Mix;Patricia E Maloney;Christopher J. Friedline;

10.1101/038240 — Evolutionary Biology — Posted on 2016-01-29

12 SNP-sites: rapid efficient extraction of SNPs from multi-FASTA alignments

Andrew J. Page;Ben Taylor;Aidan J. Delaney;Jorge Soares;Torsten Seemann;Jacqueline A. Keane;Simon R. Harris;

10.1101/038190 — Bioinformatics — Posted on 2016-01-29

13 MetaFlow: Metagenomic profiling based on whole-genome coverage analysis with min-cost flows

Ahmed Sobih;Alexandru I. Tomescu;Veli Mäkinen;

10.1101/038208 — Bioinformatics — Posted on 2016-01-29

14 A community overlap strategy reveals central genes and networks in heart failure

Pablo Cordero;Ayca Erbilgin;Ching Shang;Michael P Morley;Mathew Wheeler;Frederick Dewey;Kevin S Smith;Ray Hu;Jeffrey Brandimarto;Yichuan Liu;Mingyao Li;Hongzhe Li;Scott Ritter;Sihai H Zhao;Komal S Rathi;Liming Qu;Avinash Das;Stephen Montgomery;Sridhar Hannenhalli;Christine S Moravec;Wilson H Tang;Kenneth B Margulies;Thomas P Cappola;Euan A Ashley;

10.1101/038174 — Genomics — Posted on 2016-01-28

15 On the Importance of Hydrodynamic Interactions in the Stepping Kinetics of Kinesin

Dave Thirumalai;Yonathan Goldtzvik;Zhechun Zhang;

10.1101/037408 — Biophysics — Posted on 2016-01-28

16 Plastid degeneration in Tillandsia (Bromeliaceae) provides evidence about the origin of multilamellar bodies in plants

Alessio Papini;Wouter G. van Doorn;

10.1101/038158 — Plant Biology — Posted on 2016-01-28

17 Signatures of positive selection and local adaptation to urbanization in white-footed mice (Peromyscus leucopus)

Stephen E Harris;Jason Munshi-South;

10.1101/038141 — Evolutionary Biology — Posted on 2016-01-28

18 Evolutionary stability of jointly evolving traits in subdivided populations

Charles Mullon;Laurent Keller;Laurent Lehmann;

10.1101/037887 — Evolutionary Biology — Posted on 2016-01-28

19 The genetic Allee effect: a unified framework for the genetics and demography of small populations

Gloria M Lucque;Chloe Vayssade;Benoit Facon;Thomas Guillemaud;Franck Courchamp;Xavier Fauvergue;

10.1101/038125 — Ecology — Posted on 2016-01-28

20 DAVID: An open-source platform for real-time emotional speech transformation. With 25 applications in the behavioral sciences

Laura Rachman;Marco Liuni;Pablo Arias;Andreas Lind;Petter Johansson;Lars Hall;Daniel Richardson;Katsumi Watanabe;Stephanie Dubal;Jean-Julien Aucouturier;

10.1101/038133 — Animal Behavior and Cognition — Posted on 2016-01-28

21 Micro-Magellan: A flexible, open source acquisition software for high throughput biological light microscopy

Henry Pinkard;Nico Stuurman;Kaitlin Corbin;Ronald Vale;Matthew F Krummel;

10.1101/038117 — Systems Biology — Posted on 2016-01-28

22 Real-time predictions of reservoir size and rebound time during antiretroviral therapy interruption trials for HIV

Alison L Hill;Daniel Scholes Rosenbloom;Edward Goldstein;Emily Hanhauser;Daniel R Kuritzkes;Robert F Siliciano;Timothy J Henrich;

10.1101/038091 — Microbiology — Posted on 2016-01-28

23 Integrated molecular phenotyping identifies genes and pathways disrupted in osteoarthritis

Graham R.S. Ritchie;Theodoros I. Roumeliotis;Julia Steinberg;Abbie L.A. Binch;Rachel Coyle;Mercedes Pardo;Christine L. Le Maitre;Jyoti S. Choudhary;J. Mark Wilkinson;Eleftheria Zeggini;

10.1101/038067 — Systems Biology — Posted on 2016-01-28

24 Sex-biased gene expression in Drosophila melanogaster is constrained by ontogeny and genetic architecture

Fiona C Ingleby;Claire L Webster;Tanya M Pennell;Ilona Flis;Edward H Morrow;

10.1101/034728 — Genetics — Posted on 2016-01-28

25 Dichotomy of cellular inhibition by small-molecule inhibitors revealed by single-cell analysis

Robert Vogel;Amir Erez;Grégoire Altan-Bonnet;

10.1101/038000 — Systems Biology — Posted on 2016-01-29

26 Dichotomy of cellular inhibition by small-molecule inhibitors revealed by single-cell analysis

Robert Vogel;Amir Erez;Grégoire Altan-Bonnet;

10.1101/038000 — Systems Biology — Posted on 2016-01-27

27 Droplets bumpers as mechanical sensors for cell migration under confinement

Diana Molino;Sandrine Quignard;Clémence Gruget;Frédéric Pincet;Yong Chen;Matthieu Piel;Jacques Fattaccioli;

10.1101/037275 — Cell Biology — Posted on 2016-01-27

28 Seqping: Gene Prediction Pipeline for Plant Genomes using Self-Trained Gene Models and Transcriptomic Data

Kuang-Lim Chan;Rozana Rosli;Tatiana Tatarinova;Michael Hogan;Mohd Firdaus-Raih;Eng-Ti Leslie Low;

10.1101/038018 — Bioinformatics — Posted on 2016-01-27

29 Sex-dependent and sex-independent brain resting-state functional connectivity in children with autism spectrum disorder

Xin Di;Bharat B Biswal;

10.1101/038026 — Neuroscience — Posted on 2016-01-27

30 INC-Seq: Accurate single molecule reads using nanopore sequencing

Chenhao Li;Kern Rei Chng;Jia Hui Esther Boey;Hui Qi Amanda Ng;Andreas Wilm;Niranjan Nagarajan;

10.1101/038042 — Genomics — Posted on 2016-01-27

31 Citizen Science for Mining the Biomedical Literature

Ginger Tsueng;Max Nanis;Jennifer Fouquier;Benjamin M Good;Andrew I Su;

10.1101/038083 — Bioinformatics — Posted on 2016-01-27

32 DNA sequencing with stacked nanopores and exonuclease: a simulation-based analysis

G. Sampath;

10.1101/038034 — Bioengineering — Posted on 2016-01-27

33 Sensitive whole mount in situ localization of small RNAs in plants

Mouli Ghosh Dastidar;Magdalena Mosiolek;Michael D Nodine;Alexis Maizel;

10.1101/037978 — Plant Biology — Posted on 2016-01-26

34 On Post-Acquisition Motion Compensation for Prostate Perfusion Analysis

Gert Wollny;Isabel Casanova;Maria-Jesus Ledesma-Carbayo;Andres Santos;

10.1101/037986 — Pathology — Posted on 2016-01-26

35 IRNdb: The database of immunologically relevant non-coding RNAs.

Elena Denisenko;Daniel Ho;Ousman Tamgue;Mumin Ozturk;Harukazu Suzuki;Frank Brombacher;Reto Guler;Sebastian Schmeier;

10.1101/037911 — Immunology — Posted on 2016-01-26

36 Using Genome Wide Estimates of Heritability to Examine the Relevance of Gene-Environment Interplay

BENJAMIN W DOMINGUE;Jason D. Boardman;

10.1101/037861 — Genetics — Posted on 2016-01-26

37 An In Silico Model to Simulate the Evolution of Biological Aging

Arian Šajina;Dario Riccardo Valenzano;

10.1101/037952 — Evolutionary Biology — Posted on 2016-01-26

38 Evolutionary inference across eukaryotes identifies specific pressures favoring mitochondrial gene retention

Iain G Johnston;Ben P Williams;

10.1101/037960 — Evolutionary Biology — Posted on 2016-01-26

39 Validating silicon polytrodes with paired juxtacellular recordings: method and dataset

Joana P. Neto;Gonçalo Lopes;João Frazão;Joana Nogueira;Pedro Lacerda;Pedro Baião;Arno Aarts;Alexandru Andrei;Silke Musa;Elvira Fortunato;Pedro Barquinha;Adam Kampff;

10.1101/037937 — Neuroscience — Posted on 2016-01-26

40 How do metal ions direct ribozyme folding?

Dave Thirumalai;Natasha A. Denesyuk;

10.1101/037895 — Biophysics — Posted on 2016-01-26

41 Incorporating and compensating cerebrospinal fluid in surface-based forward models of magneto- and electroencephalography

Matti Stenroos;Aapo Nummenmaa;

10.1101/037788 — Neuroscience — Posted on 2016-01-25

42 Expression of segment polarity genes in brachiopods supports a non-segmental ancestral role of engrailed for bilaterians

Bruno Cossermelli Vellutini;Andreas Hejnol;

10.1101/029892 — Evolutionary Biology — Posted on 2016-01-25

43 Statistics of Cellular Evolution in Leukemia: Allelic Variations in Patient Trajectories Based on Immune Repertoire Sequencing

Hong Gao;Chunlin Wang;Junhee Seok;Marcus W Feldman;Wenzhong Xiao;

10.1101/037770 — Evolutionary Biology — Posted on 2016-01-25

44 A comparison of ancestral state reconstruction methods for quantitative characters

Manuela Royer-Carenzi;Gilles Didier;

10.1101/037812 — Evolutionary Biology — Posted on 2016-01-25

45 Identification and Functional Characterization of Muscle Satellite Cells in Drosophila

RAJESH D. GUNAGE;Heinrich Reichert;K. VijayRaghavan;

10.1101/037838 — Developmental Biology — Posted on 2016-01-25

46 Predictive multi-scale computational environment for studying epithelial dynamics

Ali Nematbakhsh;Wenzhao Sun;Pavel A Brodskiy;Cody Narciso;Zhiliang Xu;Jeremiah J Zartman;Mark S Alber;

10.1101/037820 — Biophysics — Posted on 2016-01-25

47 The Northern Arizona SNP Pipeline (NASP): accurate, flexible, and rapid identification of SNPs in WGS datasets

Jason W Sahl;Darrin Lemmer;Jason Travis;James Schupp;John Gillece;Maliha Aziz;Elizabeth Driebe;Kevin Drees;Nathan Hicks;Charles Williamson;Crystal Hepp;David Smith;Chandler Roe;David Engelthaler;David Wagner;Paul Keim;

10.1101/037267 — Bioinformatics — Posted on 2016-01-25

48 A Genetically Encoded Reporter for Diffusion Weighted Magnetic Resonance Imaging

Arnab Mukherjee;Di Wu;Hunter C. Davis;Mikhail G. Shapiro;

10.1101/037515 — Bioengineering — Posted on 2016-01-25

49 The view of the native gauges of blood pressure - focus on atrium (hydrodynamics and rheology)

Yuri Kamnev;

10.1101/037705 — Physiology — Posted on 2016-01-22

50 A genetic test for differential causative pathology in disease subgroups

James Liley;John A. Todd;Chris Wallace;

10.1101/037713 — Genomics — Posted on 2016-01-22

51 TreeToReads - a pipeline for simulating raw reads from phylogenies

Emily Jane McTavish;James Pettengill;Steven Davis;Hugh Rand;Errol Strain;Marc Allard;Ruth E Timme;

10.1101/037655 — Genomics — Posted on 2016-01-22

52 Search calls long duration puts the bat on the tympanate moth's radar. A new perspective on how Noctuoidea's auditory cells drive evasive manoeuvres

Herve Thevenon;Gerit Pfuhl;

10.1101/037648 — Animal Behavior and Cognition — Posted on 2016-01-22

53 The wiring diagram of a glomerular olfactory system

Matthew E. Berck;Avinash Khandelwal;Lindsey Claus;Luis Hernandez-Nunez;Guangwei Si;Christopher J. Tabone;Feng Li;James W. Truman;Richard D. Fetter;Matthieu Louis;Aravinthan D. T. Samuel;Albert Cardona;

10.1101/037721 — Neuroscience — Posted on 2016-01-25

54 The wiring diagram of a glomerular olfactory system

10.1101/037721 — Neuroscience — Posted on 2016-01-22

55 Tagmentation-Based Mapping (TagMap) of Mobile DNA Genomic Insertion Sites

David L Stern;

10.1101/037762 — Molecular Biology — Posted on 2016-01-22

56 Identification of positive selection in genes is greatly improved by using experimentally informed site-specific models

Jesse D Bloom;

10.1101/037689 — Evolutionary Biology — Posted on 2016-01-22

57 Stress affects the epigenetic marks added by Bari-Jheh: a natural insertion associated with two adaptive phenotypes in Drosophila

Lain Guio;Cristina Vieira;Josefa González;

10.1101/037598 — Evolutionary Biology — Posted on 2016-01-22

58 Reference-free deconvolution of DNA methylation data and mediation by cell composition effects

Eugene Andres Houseman;Molly L Kile;David C Christiani;Tan A Ince;Karl T Kelsey;Carmen J Marsit;

10.1101/037671 — Bioinformatics — Posted on 2016-01-23

59 Reference-free deconvolution of DNA methylation data and mediation by cell composition effects

Eugene Andres Houseman;Molly L Kile;David C Christiani;Tan A Ince;Karl T Kelsey;Carmen J Marsit;

10.1101/037671 — Bioinformatics — Posted on 2016-01-22

60 Nuclear and mitochondrial phylogeny of Rossella (Hexactinellida: Lyssacinosida, Rossellidae): a species and a species flock in the Southern Ocean

Sergio Vargas R.;Martin Dohrmann;Christian Goecke;Dorte Janussen;Gert Woerheide;

10.1101/037440 — Zoology — Posted on 2016-01-22

61 Nuclear and mitochondrial phylogeny of Rossella (Hexactinellida: Lyssacinosida, Rossellidae): a species and a species flock in the Southern Ocean

Sergio Vargas R.;Martin Dohrmann;Christian Goecke;Dorte Janussen;Gert Woerheide;

10.1101/037440 — Zoology — Posted on 2016-01-22

62 The basis of sharp spike onset in standard biophysical models

Maria Teleńczuk;Bertrand Fontaine;Romain Brette;

10.1101/037549 — Neuroscience — Posted on 2016-01-22

63 A neurocomputational model of human frontopolar cortex function

Alexandre HYAFIL;Etienne KOECHLIN;

10.1101/037150 — Neuroscience — Posted on 2016-01-22

64 HASE:Framework for efficient high-dimensional association analyses

Gennady Roshchupkin;Hieab Adams;Meike Vernooij;Albert Hofman;Cornelia van Duijn;Arfan Ikram;Wiro Niessen;

10.1101/037382 — Genetics — Posted on 2016-01-22

65 Selection for dispersal leads to evolution of kernel and increased locomotor activity in Drosophila melanogaster

Sudipta Tung;Abhishek Mishra;P.M. Shreenidhi;Mohammed Aamir Sadiq;Sripad Joshi;V.R. Shree Sruti;Sutirth Dey;

10.1101/037606 — Ecology — Posted on 2016-01-22

66 A Quantitative Analysis of Localized Robustness of MYCN in Neuroblastoma

Romeil Sandhu;sarah Tannenbaum;Daniel Diolaiti;Alberto Ambesi-Impiombato;Andrew Kung;Allen Tannenbaum;

10.1101/037465 — Cancer Biology — Posted on 2016-01-22

67 Precision Medicine in the Clinic: Personalizing a Model of Glioblastoma Through Parameterization

Andrea Hawkins-Daarud;Kristin R. Swanson;

10.1101/037424 — Cancer Biology — Posted on 2016-01-22

68 Folding PDZ2 domain using the Molecular Transfer Model

Zhenxing Liu;Govardhan Reddy;Dave Thirumalai;

10.1101/037283 — Biophysics — Posted on 2016-01-22

69 Features of ChIP-seq data peak calling algorithms with good operating characteristics

Reuben Thomas;Sean Thomas;Alisha K Holloway;Katherine S Pollard;

10.1101/037473 — Bioinformatics — Posted on 2016-01-22

70 Transcription factor loads tend to decrease the robustness of stable gene transcription networks

Shaoshuai Mou;Domitilla Del Vecchio;

10.1101/037564 — Systems Biology — Posted on 2016-01-21

71 Chromes from Chromatin: Sonification of the Epigenome

Davide Cittaro;Dejan Lazarevic;Paolo Provero;

10.1101/037523 — Genomics — Posted on 2016-01-21

72 Genetic and environmental risk for chronic pain and the contribution of risk variants for psychiatric disorders. Results from Generation Scotland: Scottish Family Health Study and UK Biobank

Andrew M McIntosh;Lynsey S Hall;Yanni Zeng;Mark James Adams;Jude Gibson;Ella Wigmore;Maria Pujils-Fernandez;Archie I Campbell;Toni-Kim Clarke;Caroline Hayward;Christopher Haley;David Porteous;Ian Deary;Daniel Smith;Barbara Nicholl;David A Hinds;Amy V Jones;Serena Scollen;Weihua Meng;Blair Smith;Lynne J Hocking;

10.1101/037457 — Genomics — Posted on 2016-01-21

73 Exploring genes of rectal cancer for new treatments based on protein interaction network

wenjing Teng;Yan Li;Chao Zhou;

10.1101/037531 — Cancer Biology — Posted on 2016-01-21

74 The sex-limited effects of mutations in the EGFR and TGF- β signaling pathways on shape and size sexual dimorphism and allometry in the Drosophila wing

Nick Testa;Ian Dworkin;

10.1101/037630 — Genetics — Posted on 2016-01-21

75 Physiological reason for ceasing growth of unfertilized eggs produced by unmated queens in the subterranean termite Reticulitermes chinensis

Ganghua Li;Long Liu;Pengdong Sun;Yao Wu;Chaoliang Lei;Xiongwen Chen;Qiuying Huang;

10.1101/037390 — Zoology — Posted on 2016-01-21

76 Commentary on "Limitations of GCTA as a solution to the missing heritability problem"

Jian Yang;Sang Hong Lee;Naomi R. Wray;Michael E. Goddard;Peter M Visscher;

10.1101/036574 — Genetics — Posted on 2016-01-20

77 A Bayesian framework for comparing the structure of spontaneous correlated activity recorded under different conditions

Catherine S Cutts;Stephen J Eglen;

10.1101/037358 — Neuroscience — Posted on 2016-01-20

78 RFPRED: A RANDOM FOREST APPROACH FOR PREDICTION OF MISSENSE VARIANTS IN HUMAN EXOME

Fabienne JABOT-HANIN;Hugo Varet;Frederic Tores;Alexandre Alcais;Jean-Philippe Jais;

10.1101/037127 — Genomics — Posted on 2016-01-20

79 Automated Discrimination of Dicentric and Monocentric Chromosomes by Machine Learning-based Image Processing

Yanxin Li;Joan HM Knoll;Ruth Wilkins;Farrah N Flegal;Peter K Rogan;

10.1101/037309 — Genetics — Posted on 2016-01-20

80 Analysis of Two-State Folding Using Parabolic Approximation II: Temperature-Dependence

Robert S Sade;

10.1101/037341 — Biophysics — Posted on 2016-01-20

81 Dendritic trafficking faces physiologically critical speed-precision tradeoffs

Alex H Williams;Cian O'Donnell;Terrence Sejnowski;Timothy O'Leary;

10.1101/037374 — Neuroscience — Posted on 2016-01-19

82 High-throughput identification of C/D box snoRNA targets with CLIP and RiboMeth-seq.

Rafal Gumienny;Dominik Jedlinski;Georges Martin;Arnau Vina-Villaseca;Mihaela Zavolan;

10.1101/037259 — Bioinformatics — Posted on 2016-01-19

83 Divorcing strain classification from species names

David Baltrus;

10.1101/037325 — Microbiology — Posted on 2016-01-19

84 SPARC promotes cell invasion in vivo by decreasing type IV collagen levels in the basement membrane

Meghan A Morrissey;Ranjay Jayadev;Ginger R Miley;Catherine A Blebea;Qiuyi Chi;Shinji Ihara;David Sherwood;

10.1101/037218 — Cell Biology — Posted on 2016-01-19

85 Bayesian inference of natural selection from allele frequency time series

Joshua Schraiber;Steven N. Evans;Montgomery Slatkin;

10.1101/037200 — Evolutionary Biology — Posted on 2016-01-19

86 Fine-scale crossover rate variation on the C. elegans X chromosome

Max R. Bernstein;Matthew V. Rockman;

10.1101/037317 — Genetics — Posted on 2016-01-19

87 Genome-wide patterns of regulatory divergence revealed by introgression lines

Rafael F Guerrero;Matthew W Hahn;Leonie C Moyle;Amanda L Posto;

10.1101/037333 — Evolutionary Biology — Posted on 2016-01-19

88 A novel nuclear genetic code alteration in yeasts and the evolution of codon reassignment in eukaryotes

Stefanie Muehlhausen;Peggy Findeisen;Uwe Plessmann;Henning Urlaub;Martin Kollmar;

10.1101/037226 — Evolutionary Biology — Posted on 2016-01-19

89 Expanding perspectives on cognition in humans, animals, and machines

Alex Gomez-Marin;Zachary F Mainen;

10.1101/037192 — Animal Behavior and Cognition — Posted on 2016-01-19

90 Areas activated during naturalistic reading comprehension overlap topological visual, auditory, and somatotomotor maps

Mariam R Sood;Martin I Sereno;

10.1101/037176 — Neuroscience — Posted on 2016-01-29

91 Areas activated during naturalistic reading comprehension overlap topological visual, auditory, and somatotomotor maps

Mariam R Sood;Martin I Sereno;

10.1101/037176 — Neuroscience — Posted on 2016-01-19

92 Phenotypic switching can speed up biological evolution of microbes

Andrew C Tadrowski;Martin R Evans;Bartlomiej Waclaw;

10.1101/037184 — Evolutionary Biology — Posted on 2016-01-19

93 The Effect of Anthropogenic Land Cover Change on Pollen-Vegetation Relationships in the American Midwest

Ellen Ruth Kujawa;Simon J. Goring;Andria Dawson;Randy Calcote;Eric Grimm;Sara Hotchkiss;Elizabeth A. Lynch;Jason McLachlan;Jeannine-Marie St-Jacques;Charles Umbanhowar;John W. Williams;

10.1101/037051 — Ecology — Posted on 2016-01-19

94 A virtual B cell lymphoma model to predict effective combination therapy

Wei Du;Rebecca Goldstein;Yanwen Jiang;Omar Aly;Leandro Cerchietti;Ari Melnick;Olivier Elemento;

10.1101/037093 — Systems Biology — Posted on 2016-01-18

95 Revisiting the assessment of inter-individual differences in fMRI activations-behavior relationships.

Mael Lebreton;Stefano Palminteri;

10.1101/036772 — Neuroscience — Posted on 2016-01-18

96 Nanoscale dynamics of synaptic vesicle trafficking and fusion at the presynaptic active zone

Thirumalini Vaithianathan;Diane Henry;Wendy Akmentin;Gary Matthews;

10.1101/037143 — Neuroscience — Posted on 2016-01-18

97 On Binocular Vision: The Geometric Horopter and Cyclopean Eye

Jacek Turski;

10.1101/037069 — Neuroscience — Posted on 2016-01-18

98 A high-quality reference panel reveals the complexity and distribution of structural genome changes in a human population

Jayne Hehir-Kwa;Tobias Marschall;Wigard P Kloosterman;Laurent C Francioli;Jasmijn A Baaijens;Louis Dijkstra;Abdel Abdellaoui;Vyacheslav Koval;Djie Tjwan Thung;Rene Wardenaar;Ivo Renkens;Bradley Coe;Patrick Deelen;Joep de Ligt;Eric-Wubbo Lameijer;Freerk van Dijk;Fereydoun Hormozdiari;Andre G Uitterlinden;Evan E Eichler;Paul de Bakker;Morris Swertz;Cisca Wijmenga;Gert-Jan van Ommen;Eline Slagboom;Dorret Boomsma;Genome of the Netherlands;Alexander Schoenhuth;Kai Ye;Victor Guryev;

10.1101/036897 — Genetics — Posted on 2016-01-18

99 Believer-Skeptic meets Actor-Critic: Rethinking the role basal ganglia pathways in decision-making and reinforcement learning

Kyle Dunovan;Timothy Verstynen;

10.1101/037085 — Neuroscience — Posted on 2016-01-18

100 Genetic regulation of transcriptional variation in natural Arabidopsis thaliana accessions

Yanjun Zan;Xia Shen;Simon K G Forsberg;Orjan Carlborg;

10.1101/037077 — Genetics — Posted on 2016-01-18

101 AdmixSim: A Forward-Time Simulator for Various and Complex Scenarios of Population Admixture

Xiong Yang;Xumin Ni;Ying Zhou;Wei Guo;Kai Yuan;Shuhua Xu;

10.1101/037135 — Bioinformatics — Posted on 2016-01-18

102 Read-Based Phasing of Related Individuals

Shilpa Garg;Marcel Martin;Tobias Marschall;

10.1101/037101 — Bioinformatics — Posted on 2016-01-18

103 Changes in bioactive components of Aristolochia tagala .Cham, a rare species of medicinal importance during its in vitro development through direct regeneration

Remya Mohanraj;NARMATHA BAI V;MURUGESAN S;MUTHARAIAN VN;

10.1101/037028 — Plant Biology — Posted on 2016-01-17

104 The Neuro Bureau ADHD-200 Preprocessed Repository

Pierre Bellec;Carlton Chu;Francois Chouinard-Decorte;Yassine Benhajali;Daniel S Margulies;Cameron R Craddock;

10.1101/037044 — Neuroscience — Posted on 2016-01-17

105 When Wavelengths Collide: Bias in Cell Abundance Measurements due to Expressed Fluorescent Proteins

Ariel Hecht;Drew Endy;Marc Salit;Matthew S. Munson;

10.1101/037010 — Synthetic Biology — Posted on 2016-01-22

106 When Wavelengths Collide: Bias in Cell Abundance Measurements due to Expressed Fluorescent Proteins

Ariel Hecht;Drew Endy;Marc Salit;Matthew S. Munson;

10.1101/037010 — Synthetic Biology — Posted on 2016-01-16

107 Isoform-level gene expression patterns in single-cell RNA-sequencing data

Trung Nghia Vu;Quin F Wills;Krishna R Kalari;Nifang Niu;Liewei Wang;Yudi Pawitan;Mattias Rantalainen;

10.1101/036988 — Bioinformatics — Posted on 2016-01-16

108 Geographic cline analysis as a tool for studying genome-wide variation: a case study of pollinator-mediated divergence in a monkeyflower

Sean Stankowski;James M. Sobel;Matthew A. Streisfeld;

10.1101/036954 — Genomics — Posted on 2016-01-15

109 The prognostic potential of alternative transcript isoforms across human tumors

Juan L. Trincado;Endre Sebestyen;Amadis Pages;Eduardo Eyras;

10.1101/036947 — Cancer Biology — Posted on 2016-01-15

110 Logic models to predict continuous outputs based on binary inputs with an application to personalized cancer therapy

Theo Knijnenburg;Gunnar Klau;Francesco Iorio;Mathew Garnett;Ultan McDermott;Ilya Shmulevich;Lodewyk Wessels;

10.1101/036970 — Bioinformatics — Posted on 2016-01-15

111 pileup.js: a JavaScript library for interactive and in-browser visualization of genomic data

Dan Vanderkam;B. Arman Aksoy;Isaac Hodes;Jaclyn Perrone;Jeffrey Hammerbacher;

10.1101/036962 — Bioinformatics — Posted on 2016-01-26

112 pileup.js: a JavaScript library for interactive and in-browser visualization of genomic data

Dan Vanderkam;B. Arman Aksoy;Isaac Hodes;Jaclyn Perrone;Jeffrey Hammerbacher;

10.1101/036962 — Bioinformatics — Posted on 2016-01-15

113 A convex optimization approach for identification of human tissue-specific interactomes

Shahin Mohammadi;Ananth Grama;

10.1101/036830 — Systems Biology — Posted on 2016-01-15

114 Changes in attractor dynamics predict altered perceptual decision making with dorsolateral prefrontal tDCS

James J Bonaiuto;Archy de Berker;Sven Bestmann;

10.1101/036905 — Neuroscience — Posted on 2016-01-15

115 The 2-approximation algorithm of sorting by prefix transposition revisited

Md. Shafiqul Islam;Md. Khaledur Rahman;M. Sohel Rahman;

10.1101/036814 — Genomics — Posted on 2016-01-15

116 Cell freezing protocol optimized for ATAC-Seq on motor neurons derived from human induced pluripotent stem cells

Pamela Milani;Renan Escalante-Chong;Brandon C. Shelley;Natasha L. Patel-Murray;Xiaofeng Xin;Miriam Adam;Berhan Mandefro;Dhruv Sareen;Clive N. Svendsen;Ernest Fraenkel;

10.1101/036798 — Genomics — Posted on 2016-01-15

117 A frameshift mutation in GON4L is associated with proportionate dwarfism in Fleckvieh cattle

Hermann Schwarzenbacher;Christine Wurmser;Krzysztof Flisikowski;Lubica Misurova;Simone Jung;Martin C Langenmayer;Angelika Schnieke;Gabriela Knubben-Schweizer;Ruedi Fries;Hubert Pausch;

10.1101/036889 — Genomics — Posted on 2016-01-15

118 Differential methylation between ethnic sub-groups reflects the effect of genetic ancestry and environmental exposures

Joshua M Galanter;Christopher R Gignoux;Sam S Oh;Dara Torgerson;Maria Pino-Yanes;Neeta Thakur;Celeste Eng;Donglei Hu;Scott Huntsmann;Harold J Farber;Pedro Avila;Emerita Brigino-Buenaventura;Michael LeNoir;Kelly Meade;Denise Serebrisky;William Rodriguez-Cintron;Rajessh Kumar;Jose R Rodriguez-Santana;Max Seibold;Luisa Borrell;Esteban G Burchard;Noah Zaitlen;

10.1101/036822 — Genetics — Posted on 2016-01-15

119 How clonal are bacteria over time?

B. Jesse Shapiro;

10.1101/036780 — Evolutionary Biology — Posted on 2016-01-15

120 Open Hardware: Towards a Fully-Wireless Sub-Cranial Neuro-Implant for Measuring Electrocorticography Signals

David Rotermund;Jonas Pistor;Janpeter Hoeffmann;Tim Schellenberg;Dmitriy Boll;Elena Tolstosheeva;Dieter Gauck;Dagmar Peters-Drolshagen;Andreas K. Kreiter;Martin Schneider;Steffen Paul;Walter Lang;Klaus R. Pawelzik;

10.1101/036855 — Bioengineering — Posted on 2016-01-15

121 Fast and accurate single-cell RNA-Seq analysis by clustering of transcript-compatibility counts

Vasilis Ntranos;Govinda M. Kamath;Jesse Zhang;Lior Pachter;David N. Tse;

10.1101/036863 — Genomics — Posted on 2016-01-15

122 Invasion fitness, inclusive fitness, and reproductive numbers in heterogeneous populations

Laurent Lehmann;Charles Mullon;Erol Akcay;Jeremy Van Cleve;

10.1101/036731 — — Posted on 2016-01-19

123 Invasion fitness, inclusive fitness, and reproductive numbers in heterogeneous populations

Laurent Lehmann;Charles Mullon;Erol Akcay;Jeremy Van Cleve;

10.1101/036731 — — Posted on 2016-01-16

124 Invasion fitness, inclusive fitness, and reproductive numbers in heterogeneous populations

Laurent Lehmann;Charles Mullon;Erol Akcay;Jeremy Van Cleve;

10.1101/036731 — — Posted on 2016-01-15

125 Tempo and mode of genome evolution in a 50,000-generation experiment

Olivier Tenaillon;Jeffrey E. Barrick;Noah Ribeck;Daniel E. Deatherage;Jeffrey L. Blanchard;Aurko Dasgupta;Gabriel C. Wu;Sebastien Wielgoss;Stephane Cruveiller;Claudine Medigue;Dominique Schneider;Richard E. Lenski;

10.1101/036806 — Evolutionary Biology — Posted on 2016-01-15

126 Population-Scale Sequencing Data Enables Precise Estimates of Y-STR Mutation Rates

Thomas Willems;Melissa Gymrek;G. David Poznik;Chris Tyler-Smith;The 1000 Genomes Project Chromosome Y Group;Yaniv Erlich;

10.1101/036590 — Genomics — Posted on 2016-01-15

127 Lifespan extension by dietary restriction in Drosophila is associated with GATA motifs and organ-specific, TOR-dependent transcriptional networks.

Adam J Dobson;Xiaoli He;Eric Blanc;Ekin Bolukbasi;Mingyao Yang;Matthew Piper;

10.1101/036848 — Systems Biology — Posted on 2016-01-15

128 Quantitative assessment of eye phenotypes for functional genetic studies using Drosophila melanogaster

Janani Iyer;Qingyu Wang;Thanh Le;Lucilla Pizzo;Sebastian Gronke;Surendra Ambegaokar;Yuzuru Imai;Ashutosh Srivastava;Beatriz Llamusi Troisi;Graeme Mardon;Ruben Artero;George R Jackson;Adrian Isaacs;Linda Partridge;Bingwei Lu;Justin Kumar;Santhosh Girirajan;

10.1101/036368 — Genetics — Posted on 2016-01-15

129 Efficient Correction of the Sickle Mutation in Human Hematopoietic Stem Cells Using a Cas9 Ribonucleoprotein Complex

Mark DeWitt;Wendy Magis;Nicolas L Bray;Tianjiao Wang;Jennifer R Berman;Fabrizia Urbinati;Denise P Muñoz;Donald B Kohn;Mark C Walters;Dana Carroll;David K Martin;Jacob E Corn;

10.1101/036236 — Cell Biology — Posted on 2016-01-15

130 Structural features of the fly chromatin colors revealed by automatic three-dimensional modeling.

François Serra;Davide Baù;Guillaume Filion;Marc A. Marti-Renom;

10.1101/036764 — Bioinformatics — Posted on 2016-01-15

131 Transethnic genetic correlation estimates from summary statistics

Brielin C Brown;Asian Genetic Epidemiology Network-Type 2 Diabetes;Chun Jimmie Ye;Alkes L Price;Noah Zaitlen;

10.1101/036657 — Genetics — Posted on 2016-01-14

132 Evolution of corticosteroid specificity for human, chicken, alligator and frog glucocorticoid receptors

Yoshinao Katsu;Satomi Kohno;Kaori Oka;Michael E Baker;

10.1101/036665 — Evolutionary Biology — Posted on 2016-01-14

133 Temperature regimes impact coral assemblages along environmental gradients on lagoonal reefs in Belize

Justin H Baumann;Joseph E Townsend;Travis A Courtney;Hannah E Aichelman;Sarah W Davies;Fernando P Lima;Karl D Castillo;

10.1101/036400 — Ecology — Posted on 2016-01-14

134 Structural variation detection with read pair information --- An improved null-hypothesis reduces bias

Kristoffer Sahlin;Mattias Frånberg;Lars Arvestad;

10.1101/036707 — Bioinformatics — Posted on 2016-01-14

135 Searching more genomic sequence with less memory for fast and accurate metagenomic profiling

Shea N Gardner;Sasha K Ames;Maya B Gokhale;Tom R Slezak;Jonathan Allen;

10.1101/036681 — Bioinformatics — Posted on 2016-01-14

136 Advances in two photon scanning and scanless microscopy technologies for functional neural circuit imaging

Simon R Schultz;Caroline Copeland;Amanda Foust;Peter Quicke;Renaud Schuck;

10.1101/036632 — Neuroscience — Posted on 2016-01-13

137 An Ancestry Based Approach for Detecting Interactions

Danny Park;Itamar Eskin;Eun Yong Kang;Eric R Gamazon;Celeste Eng;Christopher R Gignoux;Joshua M Galanter;Esteban Burchard;Chun J Ye;Hugues Aschard;Eleazar Eskin;Eran Halperin;Noah Zaitlen;

10.1101/036640 — Genetics — Posted on 2016-01-18

138 An Ancestry Based Approach for Detecting Interactions

Danny Park;Itamar Eskin;Eun Yong Kang;Eric R Gamazon;Celeste Eng;Christopher R Gignoux;Joshua M Galanter;Esteban Burchard;Chun J Ye;Hugues Aschard;Eleazar Eskin;Eran Halperin;Noah Zaitlen;

10.1101/036640 — Genetics — Posted on 2016-01-13

139 Principal component of explained variance: an efficient and optimal data dimension reduction framework for association studies

Maxime Turgeon;Karim Oualkacha;Antonio Ciampi;Golsa Dehghan;Brent W. Zanke;Andrea L. Benedet;Pedro Rosa-Neto;Celia MT. Greenwood;Aurelie Labbe;Alzheimer's Disease Neuroimaging Initiative;

10.1101/036566 — Bioinformatics — Posted on 2016-01-27

140 Principal component of explained variance: an efficient and optimal data dimension reduction framework for association studies

Maxime Turgeon;Karim Oualkacha;Antonio Ciampi;Golsa Dehghan;Brent W. Zanke;Andrea L. Benedet;Pedro Rosa-Neto;Celia MT. Greenwood;Aurelie Labbe;Alzheimer's Disease Neuroimaging Initiative;

10.1101/036566 — Bioinformatics — Posted on 2016-01-13

141 A novel mutation in the nucleoporin NUP35 causes murine degenerative colonic smooth muscle myopathy

Ian Parish;Lincon A Stamp;Ayla May D Lorenzo;Suzanne M Fowler;Yovina Sontani;Lisa A Miosge;Debbie R Howard;Christopher C Goodnow;Heather M Young;John B Furness;

10.1101/036582 — Pathology — Posted on 2016-01-13

142 Cell Assembly Dynamics of Sparsely-connected Inhibitory Networks: a Simple Model for the Collective Activity of Striatal Projection Neurons

David Angulo-Garcia;Joshua D. Berke;Alessandro Torcini;

10.1101/036608 — Neuroscience — Posted on 2016-01-13

143 A gene regulatory network for apical organ neurogenesis and its spatial control in sea star embryos.

Alys Jarvela;Kristen Yankura;Veronica Hinman;

10.1101/036624 — Developmental Biology — Posted on 2016-01-13

144 Comparing the Citation Performance of PNAS Papers by Submission Track

Philip M Davis;

10.1101/036616 — Scientific Communication and Education — Posted on 2016-01-13

145 Comparing the Citation Performance of PNAS Papers by Submission Track

Philip M Davis;

10.1101/036616 — Scientific Communication and Education — Posted on 2016-01-13

146 Mutation signatures reveal biological processes in human cancer

Kyle Covington;Eve Shinbrot;David A Wheeler;

10.1101/036541 — Genomics — Posted on 2016-01-13

147 SC3 - consensus clustering of single-cell RNA-Seq data

Vladimir Yu. Kiselev;Kristina Kirschner;Michael T. Schaub;Tallulah Andrews;Andrew Yiu;Tamir Chandra;Kedar N Natarajan;Wolf Reik;Mauricio Barahona;Anthony R Green;Martin Hemberg;

10.1101/036558 — Bioinformatics — Posted on 2016-01-13

148 Eighteenth century Yersinia pestis genomes reveal the long-term persistence of an historical plague focus

Kirsten I Bos;Alexander Herbig;Jason Sahl;Nicholas Waglechner;Mathieu Fourment;Stephen A Forrest;Jennifer Klunk;Verena Schuenemann;Debi Poinar;Melanie Kuch;Brian Golding;Olivier Dutour;Paul Keim;David M Wagner;Edward C Holmes;Johannes Krause;Hendrik N Poinar;

10.1101/036509 — Microbiology — Posted on 2016-01-12

149 A neo-sex chromosome in the Monarch butterfly, Danaus plexippus

James Walters;Andrew J Mongue;

10.1101/036483 — Genomics — Posted on 2016-01-12

150 The genealogical sorting index and species delimitation

David J Winter;Steven A Trewick;Jon M Waters;Hamish G Spencer;

10.1101/036525 — Evolutionary Biology — Posted on 2016-01-12

151 Analysis of Two-State Folding Using Parabolic Approximation I: Hypothesis

Robert S Sade;

10.1101/036491 — — Posted on 2016-01-31

152 Analysis of Two-State Folding Using Parabolic Approximation I: Hypothesis

Robert S Sade;

10.1101/036491 — — Posted on 2016-01-12

153 Robust Lineage Reconstruction from High-Dimensional Single-Cell Data

Gregory Giecold;Eugenio Marco;Lorenzo Trippa;Guo-Cheng Yuan;

10.1101/036533 — Bioinformatics — Posted on 2016-01-12

154 Assessing Variations in Areal Organization for the Intrinsic Brain: From Fingerprints to Reliability

Ting Xu;Alexander Opitz;R. Cameron Craddock;Margaret Wright;Xi-Nian Zuo;Michael Milham;

10.1101/035790 — Neuroscience — Posted on 2016-01-12

155 Rare loss-of-function variants in KMT2F are associated with schizophrenia and developmental disorders

Tarjinder Singh;Mitja I. Kurki;David Curtis;Shaun M. Purcell;Lucy Crooks;Jeremy McRae;Jaana Suvisaari;Himanshu Chheda;Douglas Blackwood;Gerome Breen;Olli Pietilainen;Sebastian S. Gerety;Muhammad Ayub;Moira Blyth;Trevor Cole;David Collier;Eve L. Coomber;Nick Craddock;Mark J. Daly;John Danesh;Marta DiForti;Alison Foster;Nelson B. Freimer;Daniel Geschwind;Mandy Johnstone;Shelagh Joss;Georg Kirov;Jarmo Korkko;Outi Kuismin;Peter Holmans;Christina M. Hultman;Conrad Iyegbe;Jouko Lonnqvist;Minna Mannikko;Steve A. McCarroll;Peter McGuffin;Andrew M. McIntosh;Andrew McQuillin;Jukka S. Moilanen;Carmel Moo

10.1101/036384 — Genomics — Posted on 2016-01-12

156 ARGON: fast, whole-genome simulation of the discrete time Wright-Fisher process

Pier Francesco Palamara;

10.1101/036376 — Bioinformatics — Posted on 2016-01-12

157 A performance-optimized model of neural responses across the ventral visual stream

Darren Seibert;Daniel L Yamins;Diego Ardila;Ha Hong;James J DiCarlo;Justin L Gardner;

10.1101/036475 — Neuroscience — Posted on 2016-01-12

158 The role of contact inhibition in intratumoral heterogeneity: An off-lattice individual based model

Jill Gallaher;Alexander Anderson;

10.1101/036467 — Systems Biology — Posted on 2016-01-11

159 Variation in the molecular clock of primates

Priya Moorjani;Carlos Eduardo G. Amorim;Peter F. Arndt;Molly Przeworski;

10.1101/036434 — Evolutionary Biology — Posted on 2016-01-11

160 Identification and characterization of long non-coding RNAs as targets of mammary tumor cell proliferation and migration

Sarah D Diermeier;Kung-Chi Chang;Susan M Freier;Junyan Song;Alexander Krasnitz;Frank Rigo;C. Frank Bennett;David Spector;

10.1101/036418 — Cancer Biology — Posted on 2016-01-11

161 The Computational Nature of Memory Modification

Samuel J Gershman;Marie-H. Monfils;Kenneth A Norman;Yael Niv;

10.1101/036442 — Animal Behavior and Cognition — Posted on 2016-01-12

162 The Computational Nature of Memory Modification

Samuel J Gershman;Marie-H. Monfils;Kenneth A Norman;Yael Niv;

10.1101/036442 — Animal Behavior and Cognition — Posted on 2016-01-11

163 Evaluation of TagSeq, a reliable low-cost alternative for RNAseq

Brian Keith Lohman;Jesse N Weber;Daniel I Bolnick;

10.1101/036426 — Genomics — Posted on 2016-01-11

164 Long single-molecule reads can resolve the complexity of the Influenza virus composed of rare, closely related mutant variants

Alexander Artyomenko;Nicholas C Wu;Serghei Mangul;Eleazar Eskin;Ren Sun;Alex Zelikovsky;

10.1101/036392 — Bioinformatics — Posted on 2016-01-11

165 Winners curse correction and variable thresholding improve performance of polygenic risk modeling based on summary-level data from genome-wide association studies

Jianxin Shi;JuHyun Park;Jubao Duan;Sonja Berndt;Winton Moy;William Wheeler;Xing Hua;Debra Silverman;Montserrat Garcia-Closas;Chao Agnes Hsiung;Jonine D. Figueroa;Victoria K. Cortessis;Nuria Malats;Margaret R. Karagas;Paolo Vineis;I-Shou Chang;Dongxin Lin;Baosen Zhou;Adeline Seow;Keitaro Matsuo;Yun-Chul Hong;Neil E. Caporaso;Brian Wolpin;Eric Jacobs;Gloria Petersen;Donghui Li;Harvey Risch;Alan R. Sanders;Li Hsu;Robert E. Schoen;Hermann Brenner;Rachael Stolzenberg-Solomon;Pablo Gejman;Qing Lan;Nathaniel Rothman;Laufey T. Amundadottir;Alison P. Klein;Maria Teresa Landi;Douglas F. Levinson;Stephen

10.1101/034082 — Genetics — Posted on 2016-01-10

166 Computational prediction shines light on type III secretion origins

Tatyana Goldberg;Burkhard Rost;Yana Bromberg;

10.1101/036251 — Bioinformatics — Posted on 2016-01-10

167 High-quality thermodynamic data on the stability changes of proteins upon single-site mutations

Fabrizio Pucci;Raphaël Bourgeas;Marianne Rooman;

10.1101/036301 — Bioinformatics — Posted on 2016-01-10

168 Phenotypic spandrel: absolute discrimination and ligand antagonism

Paul Francois;Kyle A Johnson;Laura N Saunders;

10.1101/036293 — Systems Biology — Posted on 2016-01-10

169 Statistical evidence for common ancestry: New tests of universal ancestry

Bret Larget;Cécile Ané;Martin Bontrager;Steve Hunter;Noah Stenz;David A. Baum;

10.1101/036327 — Evolutionary Biology — Posted on 2016-01-10

170 Measuring the sequence-affinity landscape of antibodies with massively parallel titration curves

Rhys M Adams;Justin B Kinney;Thierry Mora;Aleksandra M Walczak;

10.1101/036335 — Biophysics — Posted on 2016-01-10

171 Local opposite orientation preferences in V1: fMRI sensitivity to fine-grained pattern information

Arjen Alink;Alexander Walther;Alexandra Krugliak;Nikolaus Kriegeskorte;

10.1101/036269 — Neuroscience — Posted on 2016-01-10

172 Evidence for a probabilistic, brain-distributed, recursive mechanism for decision-making

Javier A Caballero;Mark D Humphries;Kevin N Gurney;

10.1101/036277 — Neuroscience — Posted on 2016-01-10

173 Integrating roots into a whole plant network of flowering time genes in Arabidopsis thaliana

Frederic Bouche;Maria D'Aloia;Pierre Tocquin;Guillaume Lobet;Nathalie Detry;Claire Perilleux;

10.1101/036244 — Plant Biology — Posted on 2016-01-08

174 Random recurrent networks near criticality capture the broadband power distribution of human ECoG dynamics

Rishidev Chaudhuri;Biyu He;Xiao-Jing Wang;

10.1101/036228 — Neuroscience — Posted on 2016-01-08

175 De novo Genome Assembly of Geosmithia morbida, the Causal Agent of Thousand Cankers Disease

Taruna Aggarwal;Anthony Westbrook;Kirk Broders;Keith Woeste;Matthew D MacManes;

10.1101/036285 — Genomics — Posted on 2016-01-08

176 Canvas: versatile and scalable detection of copy number variants

Eric Roller;Sergii Ivakhno;Steve Lee;Thomas Royce;Stephen Tanner;

10.1101/036194 — Bioinformatics — Posted on 2016-01-13

177 Canvas: versatile and scalable detection of copy number variants

Eric Roller;Sergii Ivakhno;Steve Lee;Thomas Royce;Stephen Tanner;

10.1101/036194 — Bioinformatics — Posted on 2016-01-08

178 A bacterial parasite effector mediates insect vector attraction in host plants independently of developmental changes

Zigmunds Orlovskis;Saskia A Hogenhout;

10.1101/036186 — Plant Biology — Posted on 2016-01-07

179 Identification of physical interactions between genomic regions by enChIP-Seq

Toshitsugu Fujita;Miyuki Yuno;Yutaka Suzuki;Sumio Sugano;Hodaka Fujii;

10.1101/036160 — Molecular Biology — Posted on 2016-01-07

180 Inferring population size history from large samples of genome wide molecular data - an approximate Bayesian computation approach

Simon Boitard;Willy Rodriguez;Flora Jay;Stefano Mona;Frederic Austeritz;

10.1101/036178 — Genetics — Posted on 2016-01-07

181 PEDLA: predicting enhancers with a deep learning-based algorithmic framework

Feng Liu;Hao Li;Chao Ren;Xiaochen Bo;Wenjie Shu;

10.1101/036129 — Bioinformatics — Posted on 2016-01-07

182 Mergeomics: integration of diverse genomics resources to identify pathogenic perturbations to biological systems

Le Shu;Yuqi Zhao;Zeyneb Kurt;Sean Geoffrey Byars;Taru Tukiainen;Johannes Kettunen;Samuli Ripatti;Bin Zhang;Michael Inouye;Ville-Petteri Makinen;Xia Yang;

10.1101/036012 — Systems Biology — Posted on 2016-01-07

183 Genome-wide identification and characterisation of HOT regions in the human genome

Hao Li;Feng Liu;Chao Ren;Xiaochen Bo;Wenjie Shu;

10.1101/036152 — Genomics — Posted on 2016-01-07

184 Evaluation of the External RNA Controls Consortium (ERCC) reference material using a modified Latin square design.

P Scott Pine;Sarah Munro;Jerod Parsons;Jennifer McDaniel;Anne Bergstrom Lucas;Jean Lozach;Timothy G Myers;Qin Su;Sarah M Jacobs-Helber;Marc Salit;

10.1101/034868 — Genomics — Posted on 2016-01-07

185 Automating Assessment of the Undiscovered Biosynthetic Potential of Actinobacteria

Bogdan Tokovenko;Yuriy Rebets;Andriy Luzhetskyy;

10.1101/036087 — Bioinformatics — Posted on 2016-01-07

186 Systematic identification of cooperation between DNA binding proteins in 3D space

Kai Zhang;Nan Li;Wei Wang;

10.1101/036145 — Bioinformatics — Posted on 2016-01-07

187 Choosing panels of genomics assays using submodular optimization

Kai Wei;Maxwell W Libbrecht;Jeffrey A Bilmes;William Noble;

10.1101/036137 — Bioinformatics — Posted on 2016-01-07

188 RASLseqTools: open-source methods for designing and analyzing RNA-mediated oligonucleotide Annealing, Selection, and, Ligation sequencing (RASL-seq) experiments

Erick R. Scott;H. Benjamin Larman;Ali Torkamani;Nicholas J. Schork;Nathan Wineinger;Max Nanis;Ryan C. Thompson;Reza B. Beheshti Zavareh;Luke L. Lairson;Peter G. Schultz;Andrew I. Su;

10.1101/036061 — Bioinformatics — Posted on 2016-01-07

189 Revised estimates for the number of human and bacteria cells in the body

Ron Sender;Shai Fuchs;Ron Milo;

10.1101/036103 — Systems Biology — Posted on 2016-01-06

190 Reverse signaling by Semaphorin-6A regulates cellular aggregation and neuronal morphology

Francesc Perez-Branguli;Yvrick Zagar;Daniel K. Shanley;Isabella A. Graef;Alain Chedotal;Kevin J. Mitchell;

10.1101/036095 — Cell Biology — Posted on 2016-01-06

191 Recessive inactivating mutations in TBCK, encoding a Rab GTPase-activating protein that modulates mTOR signaling, cause severe infantile syndromic encephalopathy

Jessica X Chong;Viviana Caputo;Ian G Phelps;Lorenzo Stella;Lisa Worgan;Jennifer C Dempsey;Alina Nguyen;Vincenzo Leuzzi;Richard Webster;Antonio Pizzuti;Colby T Marvin;Gisele E Ishak;Simone Ardern-Holmes;Zara Richmond;Univ of Washington Center for Mendelian Genomics;Michael J Bamshad;Xilma R Ortiz-Gonzalez;Marco Tartaglia;Maya Chopra;Dan Doherty;

10.1101/036111 — Genetics — Posted on 2016-01-06

192 Canopy position has a profound effect on soybean seed composition

Steven Huber;Kunzhi Li;Randall Nelson;Alexander Ulyanov;Catherine DeMuro;Ivan Baxter;

10.1101/036004 — Plant Biology — Posted on 2016-01-06

193 Canopy position has a profound effect on soybean seed composition

Steven Huber;Kunzhi Li;Randall Nelson;Alexander Ulyanov;Catherine DeMuro;Ivan Baxter;

10.1101/036004 — Plant Biology — Posted on 2016-01-06

194 Shared experience, shared memory: a common structure for brain activity during naturalistic recall

Janice Chen;Yuan Chang Leong;Kenneth A Norman;Uri Hasson;

10.1101/035931 — Neuroscience — Posted on 2016-01-06

195 Deep, Staged Transcriptomic Resources for the Novel Coleopteran Models Atrachya menetriesi and Callosobruchus maculatus

Matthew Alan Benton;Nathan James Kenny;Kai Hans Conrads;Siegfried Roth;Jeremy A Lynch;

10.1101/035998 — Genomics — Posted on 2016-01-06

196 Mapping challenging mutations by whole-genome sequencing

Harold E. Smith;Amy S. Fabritius;Aimee Jaramillo-Lambert;Andy Golden;

10.1101/036046 — Genetics — Posted on 2016-01-06

197 A Notch and Su(H) dependent enhancer complex coordinates expression of nab in Drosophila

Elizabeth Stroebele;Albert Erives;

10.1101/036038 — Developmental Biology — Posted on 2016-01-06

198 Regmex, Motif analysis in ranked lists of sequences

Morten Muhlig Nielsen;Paula Tataru;Tobias Madsen;Asger Hobolth;Jakob Skou Pedersen;

10.1101/035956 — Bioinformatics — Posted on 2016-01-11

199 Regmex, Motif analysis in ranked lists of sequences

Morten Muhlig Nielsen;Paula Tataru;Tobias Madsen;Asger Hobolth;Jakob Skou Pedersen;

10.1101/035956 — Bioinformatics — Posted on 2016-01-06

200 fusionDB: assessing microbial diversity and environmental preferences via functional similarity networks

Chengsheng Zhu;Yannick Mahlich;Yana Bromberg;

10.1101/035923 — Bioinformatics — Posted on 2016-01-07

201 fusionDB: assessing microbial diversity and environmental preferences via functional similarity networks

Chengsheng Zhu;Yannick Mahlich;Yana Bromberg;

10.1101/035923 — Bioinformatics — Posted on 2016-01-06

202 RTFBSDB: an integrated framework for transcription factor binding site analysis

Zhong Wang;Andre L Martins;Charles G Danko;

10.1101/036053 — Bioinformatics — Posted on 2016-01-06

203 A portable library to support the SBML Layout Extension

J Kyle Medley;Kiri Choi;Herbert M Sauro;

10.1101/035725 — Systems Biology — Posted on 2016-01-05

204 An acetoacetate-inducible bacterial sensor

David T Gonzales;Tanel Ozdemir;Geraint M Thomas;Chris P Barnes;

10.1101/035972 — Synthetic Biology — Posted on 2016-01-07

205 An acetoacetate-inducible bacterial sensor

David T Gonzales;Tanel Ozdemir;Geraint M Thomas;Chris P Barnes;

10.1101/035972 — Synthetic Biology — Posted on 2016-01-05

206 Identification of the ventral occipital visual field maps in the human brain

Jonathan Winawer;Nathan Witthoft;

10.1101/035980 — — Posted on 2016-01-19

207 Identification of the ventral occipital visual field maps in the human brain

Jonathan Winawer;Nathan Witthoft;

10.1101/035980 — — Posted on 2016-01-05

208 Comparative evaluation of the genomes of common bacterial members of the Drosophila intestinal community

Kristina Petkau;David Fast;Aashna Duggal;Edan Foley;

10.1101/036020 — Microbiology — Posted on 2016-01-05

209 Comparative analysis of single-cell RNA sequencing methods

Christoph Ziegenhain;Beate Vieth;Swati Parekh;Björn Reinius;Martha Smets;Heinrich Leonhardt;Ines Hellmann;Wolfgang Enard;

10.1101/035758 — Genomics — Posted on 2016-01-05

210 Beyond comparisons of means: understanding changes in gene expression at the single-cell level

Catalina A Vallejos;Sylvia Richardson;John C Marioni;

10.1101/035949 — Genomics — Posted on 2016-01-05

211 Network structural features affect stability of Calvin Bassham Benson (CBB) pathway in plants

Matthew Theisen;

10.1101/034637 — Systems Biology — Posted on 2016-01-04

212 Genome Sequences of Populus tremula Chloroplast and Mitochondrion: Implications for Holistic Poplar Breeding

Birgit Kersten;Patricia Faivre Rampant;Malte Mader;Marie-Christine Le Paslier;Remi Bounon;Aurelie Berard;Cristina Vettori;Hilke Schroeder;Jean-Charles Leple;Matthias Fladung;

10.1101/035899 — Genomics — Posted on 2016-01-04

213 Statistical Evidence for Common Ancestry: Testing for Signal in Silent Sites

Martin Bontrager;Bret Larget;Cécile Ané;David Baum;

10.1101/035915 — — Posted on 2016-01-04

214 Efficient detection of repeating sites to accelerate phylogenetic likelihood calculations

Kassian Kobert;Alexandros Stamatakis;Tomáš Flouri;

10.1101/035873 — Bioinformatics — Posted on 2016-01-04

215 Contrasting the genetic architecture of 30 complex traits from summary association data

Huwenbo Shi;Gleb Kichaev;Bogdan Pasaniuc;

10.1101/035907 — Bioinformatics — Posted on 2016-01-14

216 Contrasting the genetic architecture of 30 complex traits from summary association data

Huwenbo Shi;Gleb Kichaev;Bogdan Pasaniuc;

10.1101/035907 — Bioinformatics — Posted on 2016-01-04

217 Proteomic indicators of oxidation and hydration state in colorectal cancer

Jeffrey M. Dick;

10.1101/035857 — Biochemistry — Posted on 2016-01-04

218 On the optimal use of isotherm models for the characterization of biosorption of lead onto algae

F. Brouers;Tariq Al-Musawi;

10.1101/035774 — Bioengineering — Posted on 2016-01-02

219 The divisible load balance problem with shared cost and its application to phylogenetic inference

Constantin Scholl;Kassian Kobert;Tomas Flouri;Alexandros Stamatakis;

10.1101/035840 — Bioinformatics — Posted on 2016-01-05

220 The divisible load balance problem with shared cost and its application to phylogenetic inference

Constantin Scholl;Kassian Kobert;Tomas Flouri;Alexandros Stamatakis;

10.1101/035840 — Bioinformatics — Posted on 2016-01-02

221 Global Prediction of Chromatin Accessibility Using RNA-seq from Small Number of Cells

Weiqiang Zhou;Zhicheng Ji;Hongkai Ji;

10.1101/035816 — Genomics — Posted on 2016-01-03

222 Global Prediction of Chromatin Accessibility Using RNA-seq from Small Number of Cells

Weiqiang Zhou;Zhicheng Ji;Hongkai Ji;

10.1101/035816 — Genomics — Posted on 2016-01-01

223 Genome-wide Prediction of DNase I Hypersensitivity Using Gene Expression

Weiqiang Zhou;Ben Sherwood;Zhicheng Ji;Fang Du;Jiawei Bai;Hongkai Ji;

10.1101/035808 — Genomics — Posted on 2016-01-03

224 Genome-wide Prediction of DNase I Hypersensitivity Using Gene Expression

Weiqiang Zhou;Ben Sherwood;Zhicheng Ji;Fang Du;Jiawei Bai;Hongkai Ji;

10.1101/035808 — Genomics — Posted on 2016-01-01

225 ShapeCluster: Applying parametric regression to analyse time-series gene expression data

Philip J Law;Vicky Buchanan-Wollaston;Andrew Mead;

10.1101/035782 — Bioinformatics — Posted on 2016-01-01

226 The Maintenance of Sex and David Lack’s Principle

Joachim Dagg;

10.1101/035832 — Evolutionary Biology — Posted on 2016-01-01

227 Frequency Transformations and Spectral Gaps in Cochlear Implant Processing

Barry David Jacobson;

10.1101/035824 — Bioengineering — Posted on 2016-01-01

228 Nodes in the alpine connectome. Exploring the linkages between riparian ecosystem and geo-climatic elements across the mountain environment

Dragos G Zaharescu;Antonio Palanca-Soler;Peter S Hooda;Catalin Tanase;Carmen I Burghelea;Richard N Lester;

10.1101/035576 — Ecology — Posted on 2016-01-15

229 Hilbert-Schmidt and Sobol sensitivity indices for static and time series Wnt signaling measurements in colorectal cancer - Part A

shriprakash sinha;

10.1101/035519 — Systems Biology — Posted on 2016-01-29

230 Hilbert-Schmidt and Sobol sensitivity indices for static and time series Wnt signaling measurements in colorectal cancer - Part A

shriprakash sinha;

10.1101/035519 — Systems Biology — Posted on 2016-01-27

231 Hilbert-Schmidt and Sobol sensitivity indices for static and time series Wnt signaling measurements in colorectal cancer - Part A

shriprakash sinha;

10.1101/035519 — Systems Biology — Posted on 2016-01-18

232 The impact of amplification on differential expression analyses by RNA-seq

Swati Parekh;Christoph Ziegenhain;Beate Vieth;Wolfgang Enard;Ines Hellmann;

10.1101/035493 — Genomics — Posted on 2016-01-15

233 Reactivation of reward-related patterns from single past episodes supports memory-based decision making

G. Elliott Wimmer;Christian Buechel;

10.1101/035196 — Neuroscience — Posted on 2016-01-06

234 Pain to remember: a single incidental association with pain leads to increased memory for neutral items one year later

G. Elliott Wimmer;Christian Buechel;

10.1101/035212 — Neuroscience — Posted on 2016-01-15

235 Pain to remember: a single incidental association with pain leads to increased memory for neutral items one year later

G. Elliott Wimmer;Christian Buechel;

10.1101/035212 — Neuroscience — Posted on 2016-01-06

236 Nested metabarcode tagging: a robust tool for studying species interactions in ecology and evolution

James John Neil Kitson;Christoph Hahn;Richard J Sands;Nigel A Straw;Darren M Evans;David H Lunt;

10.1101/035071 — Ecology — Posted on 2016-01-08

237 MeSH-informed enrichment analysis and MeSH-guided semantic similarity among functional terms and gene products in chicken

Gota Morota;Timothy Mathes Beissinger;Francisco Peñagaricano;

10.1101/034975 — Genetics — Posted on 2016-01-04

238 Ancestral genome reconstruction reveals the history of ecological diversification in Agrobacterium.

Florent Lassalle;Remi Planel;Simon Penel;David Chapulliot;Valerie Barbe;Audrey Dubost;Alexandra Calteau;David Vallenet;Damien Mornico;Laurent Gueguen;Ludovic Vial;Daniel Muller;Vincent Daubin;Xavier Nesme;

10.1101/034843 — Evolutionary Biology — Posted on 2016-01-13

239 COGNITIVE ENDOPHENOTYPES OF MODERN AND EXTINCT HOMININS ASSOCIATED WITH NTNG GENE PARALOGS

Pavel Prosselkov;Ryota Hashimoto;Denis Polygalov;Ohi Kazutaka;Qi Zhang;Thomas J. McHugh;Masatoshi Takeda;Shigeyoshi Itohara;

10.1101/034413 — Genomics — Posted on 2016-01-26

240 COGNITIVE ENDOPHENOTYPES OF MODERN AND EXTINCT HOMININS ASSOCIATED WITH NTNG GENE PARALOGS

Pavel Prosselkov;Ryota Hashimoto;Denis Polygalov;Ohi Kazutaka;Qi Zhang;Thomas J. McHugh;Masatoshi Takeda;Shigeyoshi Itohara;

10.1101/034413 — Genomics — Posted on 2016-01-09

241 COGNITIVE DOMAINS FUNCTION COMPLEMENTATION BY NTNG GENE PARALOGS

Pavel Prosselkov;Denis Polygalov;Qi Zhang;Thomas J. McHugh;Shigeyoshi Itohara;

10.1101/034645 — Genomics — Posted on 2016-01-26

242 COGNITIVE DOMAINS FUNCTION COMPLEMENTATION BY NTNG GENE PARALOGS

Pavel Prosselkov;Denis Polygalov;Qi Zhang;Thomas J. McHugh;Shigeyoshi Itohara;

10.1101/034645 — Genomics — Posted on 2016-01-09

243 MicroScope: ChIP-seq and RNA-seq software analysis suite for gene expression heatmaps

Bohdan B Khomtchouk;James Hennessy;Claes Wahlestedt;

10.1101/034694 — Bioinformatics — Posted on 2016-01-05

244 Small lakes in big landscape: External drivers of littoral ecosystem in high elevation lakes

Dragos G Zaharescu;Carmen I Burghelea;Peter S Hooda;Richard N Lester;Antonio Palanca-Soler;

10.1101/034553 — Ecology — Posted on 2016-01-15

245 A Multiscale Framework for Deconstructing the Ecosystem Physical Template of High-Altitudes Lakes

Dragos G Zaharescu;Peter S Hooda;Carmen I Burghelea;Antonio Palanca-Soler;

10.1101/034405 — Ecology — Posted on 2016-01-15

246 Extreme positive allometry of animal adhesive pads and the size limits of adhesion-based climbing.

David Labonte;Christofer J Clemente;Alex Dittrich;Chi-Yun Kuo;Alfred J Crosby;Duncan J Irschick;Walter Federle;

10.1101/033845 — Evolutionary Biology — Posted on 2016-01-18

247 ME-plot: A QC package for bisulfite sequencing reads

Bong-Hyun Kim;

10.1101/033696 — Bioinformatics — Posted on 2016-01-27

248 Automated long-term recording and analysis of neural activity in behaving animals

Ashesh K Dhawale;Rajesh Poddar;Evi Kopelowitz;Valentin Normand;Steffen Wolff;Bence Olveczky;

10.1101/033266 — Neuroscience — Posted on 2016-01-24

249 The role of deleterious substitutions in crop genomes

Thomas J Y Kono;Fengli Fu;Mohsen Mohammadi;Paul J Hoffman;Chaochih Liu;Robert M Stupar;Kevin P Smith;Peter Tiffin;Justin C Fay;Peter L Morrell;

10.1101/033175 — Genetics — Posted on 2016-01-01

250 Unearthing new genomic markers of drug response by improved measurement of discriminative power

Cuong Dang;Antonio Peon;Pedro Ballester;

10.1101/033092 — Bioinformatics — Posted on 2016-01-29

251 Quantitative proteome-based guidelines for intrinsic disorder characterization

Michael Vincent;Mark Whidden;Santiago Schnell;

10.1101/032847 — Bioinformatics — Posted on 2016-01-20

252 Expression weighted cell type enrichments reveal genetic and cellular nature of major brain disorders

Nathan Gerald Skene;Seth Grant;

10.1101/032680 — Neuroscience — Posted on 2016-01-12

253 Genome-wide analysis of over 106,000 individuals identifies 9 neuroticism-associated loci

Daniel J Smith;Valentina Escott-Price;Gail Davies;Mark ES Bailey;Lucia Colodro Conde;Joey Ward;Alexey Vedernikov;Riccardo Marioni;Breda Cullen;Donald Lyall;Saskia P Hagenaars;David CM Liewald;Michelle Luciano;Catharine R Gale;Stuart J Ritchie;Caroline Hayward;Barbara Nicholl;Brendan Bulik-Sullivan;Mark Adams;Baptiste Couvy-Duchesne;Nicholas Graham;Daniel Mackay;Jonathan Evans;Blair H Smith;David J Porteous;Sarah Medland;Nick Martin;Peter Holmans;Andrew M McIntosh;Jill P Pell;Ian J Deary;Michael O'Donovan;

10.1101/032417 — Genetics — Posted on 2016-01-23

254 Centromere Detection of Human Metaphase Chromosome Images using a Candidate Based Method

Akila Subasinghe;Jagath Samarabandu;Yanxin Li;Ruth Wilkins;Farrah Flegal;Joan H.M. Knoll;Peter K. Rogan;

10.1101/032110 — Genetics — Posted on 2016-01-09

255 Potential impact of sexual transmission of Ebola virus on the epidemic in West Africa

Jessica Lee Abbate;Carmen Lia Murall;Heinz Richner;Christian L. Althaus;

10.1101/031880 — Ecology — Posted on 2016-01-15

256 Neptune: A Tool for Rapid Microbial Genomic Signature Discovery

Eric Marinier;Rahat Zaheer;Chrystal Berry;Kelly A Weedmark;Michael Domaratzki;Philip Mabon;Natalie C Knox;Aleisha R Reimer;Morag R Graham;The LiDS-NG Consortium;Gary Van Domselaar;

10.1101/032227 — Bioinformatics — Posted on 2016-01-08

257 Haplotag: software for haplotype-based genotyping-by-sequencing analysis

Nicholas A Tinker;Wubishet A Bekele;Jiro Hattori;

10.1101/031013 — Bioinformatics — Posted on 2016-01-14

258 Evidence for the priming effect in a planktonic estuarine microbial community

Andrew Decker Steen;Lauren N. M. Quigley;Alison Buchan;

10.1101/030916 — Ecology — Posted on 2016-01-16

259 Comprehensive cross-population analysis of high-grade serous ovarian cancer supports no more than three subtypes

Gregory P Way;James Rudd;Chen Wang;Habib Hamidi;Brooke L Fridley;Gottfried Konecny;Ellen L Goode;Casey S Greene;Jennifer A Doherty;

10.1101/030239 — Cancer Biology — Posted on 2016-01-29

260 A prospective randomized trial examining health care utilization in individuals using multiple smartphone-enabled biosensors

Cinnamon S Bloss;Nathan E Wineinger;Melissa Peters;Debra L Boeldt;Lauren Ariniello;Ju Young Kim;Judy Sheard;Ravi Komatireddy;Paddy Barrett;Eric J Topol;

10.1101/029983 — Clinical Trials — Posted on 2016-01-14

261 The Abundance of Large Piscivorous Ferox Trout (Salmo trutta) in Loch Rannoch, Scotland

Alastair Thorne;Alasdair I MacDonald;Joseph L Thorley;

10.1101/029801 — Ecology — Posted on 2016-01-27

262 RapMap: A Rapid, Sensitive and Accurate Tool for Mapping RNA-seq Reads to Transcriptomes

Avi Srivastava;Hirak Sarkar;Nitish Gupta;Rob Patro;

10.1101/029652 — Bioinformatics — Posted on 2016-01-16

263 Variation in linked selection and recombination drive genomic divergence during allopatric speciation of European and American aspens

Jing Wang;Nathaniel R Street;Douglas G Scofield;Pär K Ingvarsson;

10.1101/029561 — Evolutionary Biology — Posted on 2016-01-21

264 Extracellular Forces Cause the Nucleus to Deform in a Highly Controlled Anisotropic Manner

Kristina Haase;Joan K. L. Macadangdang;Claire H. Edrington;Charles M. Cuerrier;Sebastian Hadjiantoniou;James L. Harden;Ilona S. Skerjanc;Andrew E. Pelling;

10.1101/027888 — Biophysics — Posted on 2016-01-21

265 Neural and non-neural contributions to sexual dimorphism of mid-day sleep in Drosophila: A pilot study

Mobina Khericha;Jaison B Kolenchery;Eran Tauber;

10.1101/027847 — Neuroscience — Posted on 2016-01-05

266 Design Space Exploration of the Violacein Pathway in Escherichia coli Based Transcription Translation Cell-Free System (TX-TL)

Phuc H.B. Nguyen;Yong Wu;Shaobin Guo;Richard M Murray;

10.1101/027656 — Synthetic Biology — Posted on 2016-01-26

267 TRONCO: an R package for the inference of cancer progression models from heterogeneous genomic data

Luca De Sano;Giulio Caravagna;DANIELE RAMAZZOTTI;Alex Graudenzi;Giancarlo Mauri;Bud Mishra;Marco Antoniotti;

10.1101/027474 — Bioinformatics — Posted on 2016-01-26

268 Plasticity-Driven Self-Organization under Topological Constraints Accounts for Non-Random Features of Cortical Synaptic Wiring.

Daniel Miner;Jochen Triesch;

10.1101/027268 — Neuroscience — Posted on 2016-01-08

269 Spatially-constrained growth enhances conversional meltdown

Maxim O. Lavrentovich;Mary E. Wahl;David R. Nelson;Andrew W. Murray;

10.1101/027292 — Evolutionary Biology — Posted on 2016-01-25

270 Standard melanoma-associated markers do not identify the MM127 metastatic melanoma cell line

Parvathi Haridas;Jacqui McGovern;Ahishek Kashyap;Sean McElwain;Matthew Simpson;

10.1101/026633 — Cancer Biology — Posted on 2016-01-25

271 Natural selection and recombination rate variation shape nucleotide polymorphism across the genomes of three related Populus species.

Jing Wang;Nathaniel R Street;Douglas G Scofield;Pär K Ingvarsson;

10.1101/026344 — Evolutionary Biology — Posted on 2016-01-07

272 Mechanistic modelling and Bayesian inference elucidates the variable dynamics of double-strand break repair

Chris P Barnes;Mae Woods;

10.1101/026070 — Systems Biology — Posted on 2016-01-05

273 Application of a dense genetic map for assessment of genomic responses to selection and inbreeding in Heliothis virescens.

Megan Fritz;Sandra Paa;Jennifer Baltzegar;Fred Gould;

10.1101/025981 — Genomics — Posted on 2016-01-07

274 DNA-metabarcoding uncovers the diversity of soil-inhabiting fungi in the tropical island of Puerto Rico

Hector Urbina;Douglas G. Scofield;Matias Cafaro;Anna Rosling;

10.1101/025668 — Microbiology — Posted on 2016-01-04

275 A statistical approach reveals designs for the most robust stochastic gene oscillators

Mae Woods;Miriam Leon;Ruben Perez-Carrasco;Chris P Barnes;

10.1101/025056 — Synthetic Biology — Posted on 2016-01-05

276 R2d2 drives selfish sweeps in the house mouse

John P Didion;Andrew Parker Morgan;Liran Yadgary;Timothy A Bell;Rachel Clara McMullan;Lydia Ortiz de Solorzano;Janice Britton-Davidian;Carol J Bult;Karl J Campbell;Riccardo Castiglia;Yung-Hao Ching;Amanda J Chunco;James J Crowley;Elissa J Chesler;John E French;Sofia I Gabriel;Daniel M Gatti;Theodore Garland;Eva B Giagia-Athanasopoulou;Mabel D Giménez;Sofia A Grize;İslam Gündüz;Andrew Holmes;Heidi C Hauffe;Jeremy S Herman;James M Holt;Kunji Hua;Wesley J Jolley;Anna K Lindholm;María J López-Fuster;George Mitsainas;Maria Mathias;Leonard McMillan;M Graça Ramalhinho;Barbara Rehermann;Stephan P Ross