bioRxiv directory

1 Whole-genome modeling accurately predicts quantitative traits, as revealed in plants.

Laurent GENTZBITTEL;Cecile Ben;Melanie Mazurier;Min-Gyoung Shin;Martin Triska;Martina Rickauer;Yuri Nikolsky;Paul Marjoram;Sergey Nuzhdin;Tatiana Tatarinova;

10.1101/030395 — Genetics — Posted on 2015-10-31

2 Genome-wide association studies suggest limited immune gene enrichment in schizophrenia compared to five autoimmune diseases

Jennie G Pouget;Vanessa F Goncalves;Schizophrenia Working Group of the PGC;Sarah L Spain;Hilary K Finucane;Soumya Raychaudhuri;James L Kennedy;Jo Knight;

10.1101/030411 — Genetics — Posted on 2015-10-31

3 repgenHMM: a dynamic programming tool to infer the rules of immune receptor generation from sequence data

Yuval Elhanati;Quentin Marcou;Thierry Mora;Aleksandra M Walczak;

10.1101/030403 — Bioinformatics — Posted on 2015-10-31

4 IMO-HIP 2015 Report: An Evolutionary Game Theory Approach to evolutionary-enlightened application of chemotherapy in bone metastatic prostate cancer

Pranav Warman;Arturo Araujo;Conor Lynch;David Basanta;

10.1101/030262 — Cancer Biology — Posted on 2015-10-30

5 The Genetic Cost of Neanderthal Introgression

Kelley Harris;Rasmus Nielsen;

10.1101/030387 — Evolutionary Biology — Posted on 2015-10-31

6 The Genetic Cost of Neanderthal Introgression

Kelley Harris;Rasmus Nielsen;

10.1101/030387 — Evolutionary Biology — Posted on 2015-10-30

7 The Strength of Selection Against Neanderthal Introgression

Ivan Juric;Simon Aeschbacher;Graham Coop;

10.1101/030148 — Evolutionary Biology — Posted on 2015-10-30

8 SimpleSBML: A Python package for creating and editing SBML models

Caroline Cannistra;Kyle Medley;Herbert Sauro;

10.1101/030312 — Systems Biology — Posted on 2015-10-30

9 Balanced Oscillatory Coupling Improves Information Flow

Erik J Peterson;Bradley Voytek;

10.1101/030304 — Neuroscience — Posted on 2015-10-31

10 Balanced Oscillatory Coupling Improves Information Flow

Erik J Peterson;Bradley Voytek;

10.1101/030304 — Neuroscience — Posted on 2015-10-30

11 Human Microbiota of the Argentine Population- A pilot study

Belen Carbonetto;Monica Fabbro;Mariela Sciara;Analia Seravalle;Guadalupe Mejico;Santiago Revale;Soledad Romero;Bianca Brun;Marcelo Fay;Fabian Fay;Martin Vazquez;

10.1101/030361 — Microbiology — Posted on 2015-10-30

12 Distinguishing contemporary hybridization from past introgression with post-genomic ancestry-informative SNPs in strongly differentiated Ciona species

Sarah Bouchemousse;Cathy Haag-Liautard;Nicolas Bierne;Frederique Viard;

10.1101/030346 — Evolutionary Biology — Posted on 2015-10-30

13 Comprehensive cross-population analysis of high-grade serous ovarian cancer supports no more than three subtypes

Gregory P Way;James Rudd;Chen Wang;Habib Hamidi;Brooke L Fridley;Gottfried Konecny;Ellen L Goode;Casey S Greene;Jennifer A Doherty;

10.1101/030239 — Cancer Biology — Posted on 2015-10-30

14 DBSIM: A Platform of Simulation Resources for Genetic Epidemiology Studies

Po-Ju Yao;Ren-Hua Chung;

10.1101/030353 — Bioinformatics — Posted on 2015-10-30

15 Analysis of protein-coding genetic variation in 60,706 humans

Exome Aggregation Consortium;Monkol Lek;Konrad Karczewski;Eric Minikel;Kaitlin Samocha;Eric Banks;Timothy Fennell;Anne O'Donnell-Luria;James Ware;Andrew Hill;Beryl Cummings;Taru Tukiainen;Daniel Birnbaum;Jack Kosmicki;Laramie Duncan;Karol Estrada;Fengmei Zhao;James Zou;Emma Pierce-Hoffman;Joanne Berghout;David Cooper;Nicole Deflaux;Mark DePristo;Ron Do;Jason Flannick;Menachem Fromer;Laura Gauthier;Jackie Goldstein;Namrata Gupta;Daniel Howrigan;Adam Kiezun;Mitja Kurki;Ami Levy Moonshine;Pradeep Natarajan;Lorena Orozco;Gina Peloso;Ryan Poplin;Manuel Rivas;Valentin Ruano-Rubio;Samuel Rose;Douglas

10.1101/030338 — Genomics — Posted on 2015-10-30

16 Sporadic, global linkage disequilibrium between unlinked segregating sites

Daniel A Skelly;Paul M Magwene;Eric A Stone;

10.1101/030247 — Genetics — Posted on 2015-10-30

17 Frequency and complexity of de novo structural mutation in autism

William M Brandler;Danny Antaki;Madhusudan Gujral;Amina Noor;Gabriel Rosanio;Timothy R Chapman;Daniel J Barrera;Guan Ning Lin;Dheeraj Malhotra;Amanda C Watts;Lawrence C Wong;Jasper A Estabillo;Therese E Gadomski;Oanh Hong;Karin V Fuentes Fajardo;Abhishek Bhandari;Renius Owen;Michael Baughn;Jeffrey Yuan;Terry Solomon;Alexandra G Moyzis;Stephan J Sanders;Gail E Reiner;Keith K Vaux;Charles M Strom;Kang Zhang;Alysson R Muotri;Natacha Akshoomoff;Suzanne M Leal;Karen Pierce;Eric Courchesne;Lilia M Iakoucheva;Christina Corsello;Jonathan Sebat;

10.1101/030270 — Genomics — Posted on 2015-10-30

18 Frequency and complexity of de novo structural mutation in autism

10.1101/030270 — Genomics — Posted on 2015-10-30

19 High efficiency transfection of thymic epithelial cell lines and primary thymic epithelial cells by Nucleofection.

Richard T O'Neil;Qiaozhi Wei;Brian G Condie;

10.1101/030221 — Immunology — Posted on 2015-10-29

20 Patching holes in the Chlamydomonas genome

Frej Tulin;Frederick R. Cross;

10.1101/030163 — Genomics — Posted on 2015-10-29

21 MetaR: simple, high-level languages for data analysis with the R ecosystem

Fabien Campagne;William ER Digan;Manuele Simi;

10.1101/030254 — Bioinformatics — Posted on 2015-10-29

22 Inferring extrinsic noise from single-cell gene expression data using Approximate Bayesian Computation.

Oleg Lenive;Paul DW Kirk;Michael PH Stumpf;

10.1101/030155 — Systems Biology — Posted on 2015-10-29

23 Recovery of dynamics and function in spiking neural networks by closed-loop control

Ioannis Vlachos;Taskin Deniz;Ad Aertsen;Arvind Kumar;

10.1101/030189 — Neuroscience — Posted on 2015-10-29

Manja Wachsmuth;Alexander Huebner;Mingkun Li;Burkhard Madea;Mark Stoneking;

10.1101/030205 — Evolutionary Biology — Posted on 2015-10-29

25 A prospective randomized trial examining health care utilization in individuals using multiple smartphone-enabled biosensors

Cinnamon S Bloss;Nathan E Wineinger;Melissa Peters;Debra L Boeldt;Lauren Ariniello;Ju Young Kim;Judy Sheard;Ravi Komatireddy;Paddy Barrett;Eric J Topol;

10.1101/029983 — Clinical Trials — Posted on 2015-10-28

26 Hydraulic conductance and the maintenance of water balance in flowers

Adam Roddy;Craig R. Brodersen;Todd E. Dawson;

10.1101/030122 — Physiology — Posted on 2015-10-28

27 Genetic transformation of micropropagated shoots of Pinus radiata D.Don

Jan E Grant;Pauline A Cooper;Tracy M Dale;

10.1101/030080 — Plant Biology — Posted on 2015-10-28

28 Para-allopatry in hybridizing fire-bellied toads (Bombina bombina and B. variegata): inference from transcriptome-wide coalescence analyses

Beate Nurnberger;Konrad Lohse;Anna Fijarczyk;Jacek M Szymura;Mark L Blaxter;

10.1101/030056 — Evolutionary Biology — Posted on 2015-10-28

29 An introduction to antibiotic-free techniques to eliminate Staphylococcus aureus from blood

Angelo Gaitas;Gwangseong Kim;

10.1101/030072 — Bioengineering — Posted on 2015-10-28

30 Health and disease imprinted in the time variability of the human microbiome

Jose Manuel Marti;Daniel M Martinez;Manuel Pena;Cesar Gracia;Amparo Latorre;Andres Moya;Carlos P Garay;

10.1101/029991 — Systems Biology — Posted on 2015-10-27

31 Evaluation of antimalarial properties from Azores deep-sea invertebrate extracts: a first contribution

Silvia Patricia Pena Lino;Marta Machado;Dinora Lopes;Virgilio do Rosario;Ricardo S. Santos;Ana Colaco;

10.1101/030007 — Pharmacology and Toxicology — Posted on 2015-10-27

32 Prediction of Fine-tuned Promoter Activity from DNA Sequence

Geoffrey H Siwo;Andrew Rider;Asako Tan;Richard S Pinapati;Scott Emrich;Nitesh Chawla;Michael T Ferdig;

10.1101/030049 — Genomics — Posted on 2015-10-27

33 Dietary Breadth is Positively Correlated with Venom Complexity in Cone Snails

Mark A Phuong;Gusti N Mahardika;Michael E Alfaro;

10.1101/028860 — Evolutionary Biology — Posted on 2015-10-27

34 Evidence for Increasingly Variable Drought Conditions in the United States Since 1895

Sierra Rayne;Kaya Forest;

10.1101/030031 — — Posted on 2015-10-27

35 Xylem traits and growth phenology predict growth and mortality response to defoliation in temperate forests

Jane R Foster;

10.1101/030015 — — Posted on 2015-10-27

36 A population-based temporal logic gate for timing and recording chemical events

Victoria Hsiao;Yutaka Hori;Paul Rothemund;Richard Murray;

10.1101/029967 — Synthetic Biology — Posted on 2015-10-27

37 Conservation patterns’ analysis of 18,364 candidate human-specific regulatory sequences revealed two distinct pathways of the human regulatory DNA divergence

Gennadi Glinsky;

10.1101/029975 — Genomics — Posted on 2015-10-27

38 Adaptation to heavy-metal contaminated environments proceeds via selection on pre-existing genetic variation

Kevin M. Wright;Uffe Hellsten;Chenling Xu;Annie L. Jeong;Avinash Sreedasyam;Jarrod A. Chapman;Jeremy Schmutz;Graham Coop;Daniel S. Rokhsar;John H. Willis;

10.1101/029900 — Evolutionary Biology — Posted on 2015-10-27

39 Elevation of linkage disequilibrium above neutral expectations in ancestral and derived populations of Drosophila melanogaster

Nandita R. Garud;Dmitri A. Petrov;

10.1101/029942 — Evolutionary Biology — Posted on 2015-10-27

40 Functional analysis of the archaea, bacteria, and viruses from a halite endolithic microbial community

Alexander Crits-Christoph;Diego R Gelsinger;Bing Ma;Jacek Wierzchos;Jacques Ravel;Alfonso Davila;M. Cristina Casero;Jocelyne DiRuggiero;

10.1101/029934 — Microbiology — Posted on 2015-10-26

41 Recycler: an algorithm for detecting plasmids from de novo assembly graphs

Roye Rozov;Aya Brown Kav;David Bogumil;Naama Shterzer;Eran Halperin;Itzhak Mizrahi;Ron Shamir;

10.1101/029926 — Genomics — Posted on 2015-10-28

42 Recycler: an algorithm for detecting plasmids from de novo assembly graphs

Roye Rozov;Aya Brown Kav;David Bogumil;Naama Shterzer;Eran Halperin;Itzhak Mizrahi;Ron Shamir;

10.1101/029926 — Genomics — Posted on 2015-10-26

43 Apoptosis in snowflake yeast: novel trait, or side effect of toxic waste?

Jennifer Pentz;Bradford P Taylor;William C Ratcliff;

10.1101/029918 — Evolutionary Biology — Posted on 2015-10-26

44 Spatial metrics of tumour vascular organisation predict radiation efficacy in a computational model

Jacob G Scott;Alexander George Fletcher;Alexander RA Anderson;Philip K Maini;

10.1101/029595 — Cancer Biology — Posted on 2015-10-26

45 Predicting quantitative traits from genome and phenome with near perfect accuracy

Kaspar Märtens;Johan Hallin;Jonas Warringer;Gianni Liti;Leopold Parts;

10.1101/029868 — Genetics — Posted on 2015-10-26

46 Effect of lossy compression of quality scores on variant calling

Idoia Ochoa;Mikel Hernaez;Rachel Goldfeder;Tsachy Weissman;Euan Ashley;

10.1101/029843 — Bioinformatics — Posted on 2015-10-26

47 Mash: fast genome and metagenome distance estimation using MinHash

Brian D. Ondov;Todd J. Treangen;Páll Melsted;Adam B. Mallonee;Nicholas H. Bergman;Sergey Koren;Adam M. Phillippy;

10.1101/029827 — Bioinformatics — Posted on 2015-10-26

48 Deep neural networks: a new framework for modelling biological vision and brain information processing

Nikolaus Kriegeskorte;

10.1101/029876 — Neuroscience — Posted on 2015-10-26

49 Evaluation of p53 Immunohistochemical Expression Using Open-Source Software for Digital Image Analysis: A Tissue Microarray Study of Penile Squamous Cell Carcinomas

Alcides Chaux;George J Netto;Authur L Burnett;

10.1101/029850 — Pathology — Posted on 2015-10-26

50 Generalized Regressive Motion: a Visual Cue to Collision

Krzysztof Chalupka;Michael Dickinson;Pietro Perona;

10.1101/029819 — Animal Behavior and Cognition — Posted on 2015-10-26

51 The Abundance of Large Piscivorous Ferox Trout (Salmo trutta) in Loch Rannoch, Scotland

Alastair Thorne;Alasdair I MacDonald;Joseph L Thorley;

10.1101/029801 — Ecology — Posted on 2015-10-23

52 QPot: An R Package for Stochastic Differential Equation Quasi-Potential Analysis

Christopher M. Moore;Christopher R. Stieha;Ben C. Nolting;Maria K. Cameron;Karen C. Abbott;

10.1101/029777 — — Posted on 2015-10-23

53 AN EXTENSION OF THE FRI FRAMEWORK FOR CALCIUM TRANSIENT DETECTION

Stephanie Reynolds;Caroline S Copeland;Simon R Schultz;Pier Luigi Dragotti;

10.1101/029751 — Neuroscience — Posted on 2015-10-23

54 Single molecule targeted sequencing for cancer gene mutation detection

Yan Gao;Liwei Deng;Qin Yan;Yongqian Gao;Zengding Wu;Jinsen Cai;Daorui Ji;Gailing Li;Ping Wu;Huan Jin;Luyang Zhao;Song Liu;Michael W Deem;Jiankui He;

10.1101/029686 — Genomics — Posted on 2015-10-23

55 SpectralTDF: transition densities of diffusion processes with time-varying selection parameters, mutation rates, and effective population sizes

Matthias Steinrücken;Ethan M Jewett;Yun S Song;

10.1101/029736 — Evolutionary Biology — Posted on 2015-10-27

56 SpectralTDF: transition densities of diffusion processes with time-varying selection parameters, mutation rates, and effective population sizes

Matthias Steinrücken;Ethan M Jewett;Yun S Song;

10.1101/029736 — Evolutionary Biology — Posted on 2015-10-27

57 SpectralTDF: transition densities of diffusion processes with time-varying selection parameters, mutation rates, and effective population sizes

Matthias Steinrücken;Ethan M Jewett;Yun S Song;

10.1101/029736 — Evolutionary Biology — Posted on 2015-10-23

58 AOP: An R Package For Sufficient Causal Analysis in Pathway-based Screening of Drugs and Chemicals for Adversity

Lyle D Burgoon;

10.1101/029694 — Bioinformatics — Posted on 2015-10-23

59 AOP: An R Package For Sufficient Causal Analysis in Pathway-based Screening of Drugs and Chemicals for Adversity

Lyle D Burgoon;

10.1101/029694 — Bioinformatics — Posted on 2015-10-23

60 Robust Group Fused Lasso for Multisample CNV Detection under Uncertainty

Hossein Sharifi Noghabi;Majid Mohammadi;

10.1101/029769 — Bioinformatics — Posted on 2015-10-23

61 SiteOut: an online tool to design binding site-free DNA sequences

Javier Estrada;Teresa Ruiz-Herrero;Clarissa Scholes;Zeba Wunderlich;Angela DePace;

10.1101/029645 — Genetics — Posted on 2015-10-22

62 Flowr: Robust and efficient pipelines using a simple language-agnostic approach

Sahil Seth;Samir Amin;Xingzhi Song;Xizeng Mao;Huandong Sun;Andrew Futreal;Jianhua Zhang;

10.1101/029710 — Bioinformatics — Posted on 2015-10-22

63 RapMap: A Rapid, Sensitive and Accurate Tool for Mapping RNA-seq Reads to Transcriptomes

Avi Srivastava;Hirak Sarkar;Nitish Gupta;Rob Patro;

10.1101/029652 — Bioinformatics — Posted on 2015-10-28

64 RapMap: A Rapid, Sensitive and Accurate Tool for Mapping RNA-seq Reads to Transcriptomes

Avi Srivastava;Hirak Sarkar;Nitish Gupta;Rob Patro;

10.1101/029652 — Bioinformatics — Posted on 2015-10-23

65 RapMap: A Rapid, Sensitive and Accurate Tool for Mapping RNA-seq Reads to Transcriptomes

Avi Srivastava;Hirak Sarkar;Nitish Gupta;Rob Patro;

10.1101/029652 — Bioinformatics — Posted on 2015-10-22

66 Y-chromosome structural diversity in the bonobo and chimpanzee lineages

Matthew Oetjens;Feichen Shen;Sarah Emery;Zhengting Zou;Jeffrey Kidd;

10.1101/029702 — Genetics — Posted on 2015-10-22

67 Relative Citation Ratio (RCR): A new metric that uses citation rates to measure influence at the article level

Bruce Ian Hutchins;Xin Yuan;James M Anderson;George M Santangelo;

10.1101/029629 — Scientific Communication and Education — Posted on 2015-10-22

68 Tuning microscale, retractable, membrane-breaking protein needles

Jessica K Polka;Pamela A Silver;

10.1101/029587 — Microbiology — Posted on 2015-10-23

69 Tuning microscale, retractable, membrane-breaking protein needles

Jessica K Polka;Pamela A Silver;

10.1101/029587 — Microbiology — Posted on 2015-10-22

70 A highly diverse, desert-like microbial biocenosis on solar panels in a Mediterranean city

Pedro Dorado-Morales;Cristina Vilanova;Juli Pereto;Franscisco M Codoner;Daniel Ramon;Manuel Porcar;

10.1101/029660 — Microbiology — Posted on 2015-10-22

71 Homomorphic ZW Chromosomes in a Wild Strawberry Show Distinctive Recombination Heterogeneity but a Small Sex-Determining Region

Jacob Tennessen;Rajanikanth Govindarajulu;Aaron Liston;Tia-Lynn Ashman;

10.1101/029611 — Genetics — Posted on 2015-10-22

72 Rawcopy: Improved copy number analysis with Affymetrix arrays

Markus Mayrhofer;Bjorn Viklund;Anders Isaksson;

10.1101/027409 — Bioinformatics — Posted on 2015-10-22

73 Combining Dependent P-values with an Empirical Adaptation of Brown’s Method

William Poole;David L. Gibbs;Ilya Shmulevich;Brady Bernard;Theo Knijnenburg;

10.1101/029637 — Bioinformatics — Posted on 2015-10-22

74 Inferring the correlated fitness effects of nonsynonymous mutations at the same site using triallelic population genomics

Aaron P Ragsdale;Alec J Coffman;PingHsun Hsieh;Travis J Struck;Ryan N Gutenkunst;

10.1101/029546 — Evolutionary Biology — Posted on 2015-10-21

75 Robust and Stable Gene Selection via Maximum-Minimum Correntropy Criterion

Majid Mohammadi;Hossein Sharifi Noghabi;Ghosheh Abed Hodtani;Habib Rajabi Mashhadi;

10.1101/029538 — Bioinformatics — Posted on 2015-10-21

76 Ramp coding with population averaging predicts human cortical face-space representations and perception

Johan D Carlin;Nikolaus Kriegeskorte;

10.1101/029603 — Neuroscience — Posted on 2015-10-21

77 Efficient genome-wide sequencing and low coverage pedigree analysis from non-invasively collected samples

Noah Snyder-Mackler;William H Majoros;Michael L Yuan;Amanda O Shaver;Jacob B Gordon;Gisela H Kopp;Stephen A Schlebusch;Jeffrey D Wall;Susan C Alberts;Sayan Mukherjee;Xiang Zhou;Jenny Tung;

10.1101/029520 — Genomics — Posted on 2015-10-21

78 Variation in linked selection and recombination drive genomic divergence during allopatric speciation of European and American aspens

Jing Wang;Nathaniel R Street;Douglas G Scofield;Pär K Ingvarsson;

10.1101/029561 — Evolutionary Biology — Posted on 2015-10-21

79 A scalable permutation approach reveals replication and preservation patterns of gene coexpression modules

Scott C Ritchie;Liam G Fearnley;Gad Abraham;Michael Inouye;

10.1101/029553 — Bioinformatics — Posted on 2015-10-21

80 Molecular genetic contributions to self-rated health

Sarah E Harris;Saskia P Hagenaars;Gail Davies;William David Hill;David CM Liewald;Stuart J Ritchie;Riccardo E Marioni;METASTROKE consortium;International Consortium for Blood Pressure;CHARGE consortium Aging and Longevity Group;CHARGE consortium Cognitive Group;Cathie LM Sudlow;Joanna M Wardlaw;Andrew M McIntosh;Catharine R Gale;Ian J Deary;

10.1101/029504 — Genetics — Posted on 2015-10-20

81 Optimal compensation for neuron death

David Barrett;Sophie Deneve;Christian Machens;

10.1101/029512 — Neuroscience — Posted on 2015-10-20

82 FASTmC: a suite of predictive models for non-reference-based estimations of DNA methylation

Adam J Bewick;Brigitte T Hofmeister;Kevin J Lee;Xiaoyu Zhang;Dave W Hall;Robert J Schmitz;

10.1101/029496 — Bioinformatics — Posted on 2015-10-20

83 Modes of migration and multilevel selection in evolutionary multiplayer games

Yuriy Pichugin;Chaitanya S. Gokhale;Julián Garcia;Arne Traulsen;Paul B. Rainey;

10.1101/029470 — Evolutionary Biology — Posted on 2015-10-19

84 Expansion of haematopoietic stem cells during development

Ion Udroiu;

10.1101/029454 — Developmental Biology — Posted on 2015-10-19

85 Sticky-flares: real-time tracking of mRNAs... or of endosomes?

David Mason;Raphael Levy;

10.1101/029447 — Cell Biology — Posted on 2015-10-19

86 Hierarchical compression of C. elegans locomotion reveals phenotypic differences in the organisation of behaviour

Alex Gomez-Marin;Greg J Stephens;Andre EX Brown;

10.1101/029462 — Animal Behavior and Cognition — Posted on 2015-10-19

87 Reconstructing Genetic History of Siberian and Northeastern European Populations

Emily H.M. Wong;Andrey Khrunin;Larissa Nichols;Dmitry Pushkarev;Denis Khokhrin;Dmitry Verbenko;Oleg Evgrafov;James Knowles;John Novembre;Svetlana Limborska;Anton Valouev;

10.1101/029421 — Genetics — Posted on 2015-10-20

88 Reconstructing Genetic History of Siberian and Northeastern European Populations

Emily H.M. Wong;Andrey Khrunin;Larissa Nichols;Dmitry Pushkarev;Denis Khokhrin;Dmitry Verbenko;Oleg Evgrafov;James Knowles;John Novembre;Svetlana Limborska;Anton Valouev;

10.1101/029421 — Genetics — Posted on 2015-10-18

89 Exploiting aberrant mRNA expression in autism for gene discovery and diagnosis

Jinting Guan;Ence Yang;Jizhou Yang;Gang Wang;Yong Zeng;Guoli Ji;James J Cai;

10.1101/029488 — Genetics — Posted on 2015-10-20

90 Exploiting aberrant mRNA expression in autism for gene discovery and diagnosis

Jinting Guan;Ence Yang;Jizhou Yang;Gang Wang;Yong Zeng;Guoli Ji;James J Cai;

10.1101/029488 — Genetics — Posted on 2015-10-19

91 Viruses are a dominant driver of protein adaptation in mammals

David Enard;Le Cai;Carina Gwenapp;Dmitri A Petrov;

10.1101/029397 — Evolutionary Biology — Posted on 2015-10-18

92 Gene tree discordance causes apparent substitution rate variation

Fabio K. Mendes;Matthew W. Hahn;

10.1101/029371 — Evolutionary Biology — Posted on 2015-10-18

93 Enhancement of larval immune system traits as a correlated response to selection for rapid development in Drosophila melanogaster

Punyatirtha Dey;Kanika Mendiratta;Joy Bose;Amitabh Joshi;

10.1101/029439 — Evolutionary Biology — Posted on 2015-10-18

94 Dynamic information routing in complex networks

Christoph Kirst;Marc Timme;Demian Battaglia;

10.1101/029405 — Neuroscience — Posted on 2015-10-18

95 Visual features as stepping stones toward semantics: Explaining object similarity in IT and perception with non-negative least squares.

Kamila M Jozwik;Nikolaus Kriegeskorte;Marieke Mur;

10.1101/029314 — Neuroscience — Posted on 2015-10-16

96 Changes in the milk metabolome of the giant panda (Ailuropoda melanoleuca) with time after birth: Three phases in early lactation and progressive individual differences

Tong Zhang;Rong Zhang;Liang Zhang;Zhihe Zhang;Rong Hou;Hairui Wang;Kati Loeffler;David G Watson;Malcolm W Kennedy;

10.1101/029363 — Zoology — Posted on 2015-10-16

97 Bivariate spatial point patterns in the retina: a reproducible review

Stephen J Eglen;

10.1101/029348 — Neuroscience — Posted on 2015-10-16

98 On the distribution and function of synaptic clusters

Romain Daniel Caze;Amanda Joy Foust;Claudia Clopath;Simon R Schultz;

10.1101/029330 — — Posted on 2015-10-16

99 Contiguous and accurate de novo assembly of metazoan genomes with modest long read coverage

Mahul Chakraborty;James G. Baldwin-Brown;Anthony D. Long;J.J. Emerson;

10.1101/029306 — Genomics — Posted on 2015-10-16

100 Continuum mechanics modeling of Drosophila mesoderm invagination based on spherical harmonics accounts for long-range tissue remodeling

Khaled Khairy;William Lemon;Fernando Amat;Philipp Keller;

10.1101/029355 — Biophysics — Posted on 2015-10-16

101 Blood circulation in the tunicate Corella inflata (Corellidae).

Michael W Konrad;

10.1101/029322 — Zoology — Posted on 2015-10-16

102 An integrated homeostatic reinforcement learning theory of motivation explains the transition to cocaine addiction

Mehdi Keramati;Audrey Durand;Paul Girardeau;Boris Gutkin;Serge Ahmed;

10.1101/029256 — Neuroscience — Posted on 2015-10-15

103 Major improvements to the Heliconius melpomene genome assembly used to confirm 10 chromosome fusion events in 6 million years of butterfly evolution

John Davey;Mathieu Chouteau;Sarah L. Barker;Luana Maroja;Simon W. Baxter;Fraser Simpson;Mathieu Joron;James Mallet;Kanchon K. Dasmahapatra;Chris D. Jiggins;

10.1101/029199 — Genomics — Posted on 2015-10-15

104 Evolution of increased larval competitive ability in Drosophila melanogaster without increased larval feeding rate

Manaswini Sarangi;Archana Nagarajan;Snigdhadip Dey;Joy Bose;Amitabh Joshi;

10.1101/029249 — Evolutionary Biology — Posted on 2015-10-15

105 Dissecting the genetic basis of a complex cis-regulatory adaptation

Santiago Naranjo;Justin Smith;Carlo Artieri;Mian Zhang;Yiqi Zhou;Michael Palmer;Hunter Fraser;

10.1101/029207 — Evolutionary Biology — Posted on 2015-10-15

106 The Great Migration and African-American genomic diversity

Soheil Baharian;Maxime Barakatt;Christopher R Gignoux;Suyash Shringarpure;Jacob Errington;William J Blot;Carlos D Bustamante;Eimear E Kenny;Scott M Williams;Melinda C Aldrich;Simon Gravel;

10.1101/029173 — — Posted on 2015-10-15

107 Disruption of endosperm development is a major cause of hybrid seed inviability between Mimulus guttatus and M. nudatus

Elen Oneal;John H. Willis;Robert Franks;

10.1101/029223 — Evolutionary Biology — Posted on 2015-10-28

108 Disruption of endosperm development is a major cause of hybrid seed inviability between Mimulus guttatus and M. nudatus

Elen Oneal;John H. Willis;Robert Franks;

10.1101/029223 — Evolutionary Biology — Posted on 2015-10-15

109 Individual-based Integral Projection Models: The role of size-structure on extinction risk and establishment success

Sebastian Schreiber;Noam Ross;

10.1101/029165 — — Posted on 2015-10-15

110 Sex and Ageing: The Role of Sexual Recombination in Longevity

Phillip Robert Smith;

10.1101/029082 — Evolutionary Biology — Posted on 2015-10-14

111 Spike Detection Using FRI Methods and Protein Calcium Sensors: Performance Analysis and Comparisons

Stephanie Reynolds;Jon Onativia;Caroline S Copeland;Simon R Schultz;Pier Luigi Dragotti;

10.1101/029124 — Neuroscience — Posted on 2015-10-14

112 Transcriptome Analysis of Cortical Tissue Reveals Shared Sets of Down-Regulated Genes in Autism and Schizophrenia

Shannon E Ellis;Rebecca Panitch;Andrew West;Dan E Arking;

10.1101/029132 — Genetics — Posted on 2015-10-14

113 Osmophoresis - a possible mechanism for vesicle trafficking in tip-growing cells

Andrei Lipchinsky;

10.1101/029157 — Cell Biology — Posted on 2015-10-14

114 Feedback Control in Planarian Stem Cell Systems

Marc Mangel;Michael B Bonsall;Aziz Aboobaker;

10.1101/029009 — Systems Biology — Posted on 2015-10-14

115 Molecular Simulation of Nonfacilitated Membrane Permeation

Ernest Awoonor-Williams;Christopher Rowley;

10.1101/029140 — Biophysics — Posted on 2015-10-14

116 Multi-Unit Activity contains information about spatial stimulus structure in mouse primary visual cortex

Marie Tolkiehn;Simon Schultz;

10.1101/029108 — Neuroscience — Posted on 2015-10-14

117 Rapid three dimensional two photon neural population scanning

Renaud Schuck;Peter Quicke;Caroline Copeland;Stefania Garasto;Luca A Annecchino;June Kyu Hwang;Simon Schultz;

10.1101/029090 — Neuroscience — Posted on 2015-10-14

118 Estimating the respective contributions of human and viral genetic variation to HIV control

Istvan Bartha;Paul J McLaren;Chanson Brumme;Richard Harrigan;Amalio Telenti;Jacques Fellay;

10.1101/029017 — Genetics — Posted on 2015-10-14

119 Gene Regulatory Evolution During Speciation in a Songbird

Christopher N. Balakrishnan;John H. Davidson;

10.1101/029033 — Evolutionary Biology — Posted on 2015-10-14

120 An Effective Model of HL-60 Differentiation

Ryan Tasseff;Holly A Jensen;Johanna Congleton;Andrew Yen;Jeffrey D Varner;

10.1101/029066 — Systems Biology — Posted on 2015-10-14

121 A synthetic gene circuit for measuring autoregulatory feedback control.

Miquel Angel Schikora-Tamarit;Carlos Toscano-Ochoa;Julia Domingo Espinos;Lorena Espinar;Lucas Carey;

10.1101/029116 — Synthetic Biology — Posted on 2015-10-14

122 Robust Classification of Protein Variation Using Structural Modeling and Large-Scale Data Integration

Evan H. Baugh;Riley Simmons-Edler;Christian L. Mueller;Rebecca F. Alford;Natalia Volfovsky;Alex E. Lash;Richard Bonneau;

10.1101/029041 — Bioinformatics — Posted on 2015-10-16

123 Robust Classification of Protein Variation Using Structural Modeling and Large-Scale Data Integration

Evan H. Baugh;Riley Simmons-Edler;Christian L. Mueller;Rebecca F. Alford;Natalia Volfovsky;Alex E. Lash;Richard Bonneau;

10.1101/029041 — Bioinformatics — Posted on 2015-10-15

124 Robust Classification of Protein Variation Using Structural Modeling and Large-Scale Data Integration

Evan H. Baugh;Riley Simmons-Edler;Christian L. Mueller;Rebecca F. Alford;Natalia Volfovsky;Alex E. Lash;Richard Bonneau;

10.1101/029041 — Bioinformatics — Posted on 2015-10-14

125 CRISPR system acquisition and evolution of an obligate intracellular Chlamydia-related bacterium

Claire Bertelli;Ousmane Cisse;Brigida Rusconi;Carole Kebbi-Beghdadi;Antony Croxatto;Alexander Goesmann;Francois Collyn;Gilbert Greub;

10.1101/028977 — Microbiology — Posted on 2015-10-13

126 Benchmarking inverse statistical approaches for protein structure and design with exactly solvable models

Hugo Jacquin;Amy Gilson;Eugene Shakhnovich;Simona Cocco;Rémi Monasson;

10.1101/028936 — Genomics — Posted on 2015-10-13

127 Population heterogeneity in the epithelial to mesenchymal transition is controlled by NFAT and phosphorylated Sp1

Russell Gould;David Bassen;Anirikh Chakrabarti;Jeffrey Varner;Jonathan Butcher;

10.1101/028993 — Systems Biology — Posted on 2015-10-13

128 Nucleotide excision repair is impaired by binding of transcription factors to DNA

Radhakrishnan Sabarinathan;Loris Mularoni;Jordi Deu-Pons;Abel Gonzalez-Perez;Nuria Lopez-Bigas;

10.1101/028886 — Genomics — Posted on 2015-10-13

129 Phylogenomic Reconstruction Supports Supercontinent Origins for Leishmania

Kelly M Harkins;Rachel S Schwartz;Reed Cartwright;Anne Stone;

10.1101/028969 — Evolutionary Biology — Posted on 2015-10-13

130 Loss of Dicer1 in mouse embryonic fibroblasts impairs ER stress-induced apoptosis

Ananya Gupta;Danielle Read;Deepu Oommen;Afshin Samali;SANJEEV GUPTA;

10.1101/028985 — Cell Biology — Posted on 2015-10-13

131 Interaction between variants in CLU and MS4A4E modulates Alzheimer’s disease risk

Mark T. W. Ebbert;Kevin L. Boehme;Mark E. Wadsworth;Lyndsay A. Staley;for the Alzheimer's Disease Neuroimaging Initiativ;Alzheimer's Disease Genetics Consortium;Shubhabrata Mukherjee;Paul K. Crane;Perry G. Ridge;John S. K. Kauwe;

10.1101/028951 — Genetics — Posted on 2015-10-13

132 Projection-specific visual feature encoding by layer 5 cortical subnetworks.

Gyorgy Lur;Martin Vinck;Lan Tang;Jessica A Cardin;Michael J Higley;

10.1101/028910 — Neuroscience — Posted on 2015-10-13

133 Declining relative humidity in the Thompson River Valley near Kamloops, British Columbia, Canada: 1990-2012

Sierra Rayne;Kaya Forest;

10.1101/028894 — Ecology — Posted on 2015-10-13

134 Coevolutionary landscape inference and the context-dependence of mutations in beta-lactamase TEM-1

Matteo Figliuzzi;Hervé Jacquier;Alexander Schug;Olivier Tenaillon;Martin Weigt;

10.1101/028902 — Bioinformatics — Posted on 2015-10-13

135 Integrated analysis of oral tongue squamous cell carcinoma identifies key variants and pathways linked to risk habits, HPV, clinical parameters and tumor recurrence

Neeraja M Krishnan;Saurabh Gupta;Vinayak Palve;Linu Varghese;Swetansu Pattnaik;Prachi Jain;Costerwell Khyriem;Arun K Hariharan;Kunal Dhas;Jayalakshmi Nair;Manisha Pareek;Venkatesh K Prasad;Gangotri Siddappa;Amritha Suresh;Vikram D Kekatpure;Moni A Kuriakose;Binay Panda;

10.1101/028845 — Genomics — Posted on 2015-10-11

136 Buffet-Style Expression Factor-Adjusted Discovery Increases the Yield of Robust Expression Quantitative Trait Loci

Peter Castaldi;Ma’en Obeidat;Eitan Halper-Stromberg;Andrew Lamb;Robert Chase;Margaret Parker;Vincent Carey;Ruth Tal-Singer;Edwin Silverman;Peter Pare;Don Sin;Craig Hersh;

10.1101/028878 — Genomics — Posted on 2015-10-11

137 RAD Capture (Rapture): Flexible and efficient sequence-based genotyping.

Omar A Ali;Sean M O'Rourke;Stephen J Amish;Mariah H Meek;Gordon Luikart;Carson Jeffres;Michael R Miller;

10.1101/028837 — Genetics — Posted on 2015-10-21

138 RAD Capture (Rapture): Flexible and efficient sequence-based genotyping.

Omar A Ali;Sean M O'Rourke;Stephen J Amish;Mariah H Meek;Gordon Luikart;Carson Jeffres;Michael R Miller;

10.1101/028837 — Genetics — Posted on 2015-10-11

139 Cell-cell interactions and evolution using evolutionary game theory

David Basanta;

10.1101/028746 — Systems Biology — Posted on 2015-10-09

140 Current systems biology approaches in hazard assessment of nanoparticles

Friederike Ehrhart;Chris Evelo;Egon Willighagen;

10.1101/028811 — Systems Biology — Posted on 2015-10-09

141 Trees, Population Structure, F-statistics!

Benjamin M Peter;

10.1101/028753 — Evolutionary Biology — Posted on 2015-10-09

142 The evolutionary advantage of heritable phenotypic heterogeneity

Oana Carja;Joshua B Plotkin;

10.1101/028795 — Evolutionary Biology — Posted on 2015-10-09

143 Distinct genomic and epigenomic features demarcate hypomethylated blocks in colon cancer

Mahfuza Sharmin;Hector Corrada Bravo;Sridhar S. Hannenhalli;

10.1101/028803 — Bioinformatics — Posted on 2015-10-09

144 Heterogeneity of Transcription Factor binding specificity models within and across cell lines

Mahfuza Sharmin;Hector Corrada Bravo;Sridhar S. Hannenhalli;

10.1101/028787 — Bioinformatics — Posted on 2015-10-09

145 Mat-aCGH: a Matlab toolbox for simultaneous multisample aCGH data analysis and visualization

Majid Mohammadi;Hossein Sharifi Noghabi;

10.1101/028761 — Bioinformatics — Posted on 2015-10-09

146 Single molecule sequencing of THCA synthase reveals copy number variation in modern drug-type Cannabis sativa L.

Kevin J McKernan;Yvonne Helbert;Vasisht Tadigotla;Stephen McLaughlin;Jessica Spangler;Lei Zhang;Douglas Smith;

10.1101/028654 — Plant Biology — Posted on 2015-10-08

147 Biogeographic dating of speciation times using paleogeographically informed processes

Michael J Landis;

10.1101/028738 — Evolutionary Biology — Posted on 2015-10-08

148 Cancer Classification by Correntropy-Based Sparse Compact Incremental Learning Machine

Mojtaba Nayyeri;Hossein Sharifi Noghabi;

10.1101/028720 — Bioinformatics — Posted on 2015-10-08

149 Social context modulates idiosyncrasy of behaviour in the gregarious cockroach Blaberus discoidalis 

James Crall;Andre Souffrant;Dominic Akandwanaho;Sawyer Hescock;Sarah Callan;W Melissa Coronado;Maude Baldwin;Benjamin de Bivort;

10.1101/028571 — Animal Behavior and Cognition — Posted on 2015-10-08

150 Insights into the phenology of migration and survival of a long migrant land bird

Benedicte Madon;Eric Le Nuz;Cedric Ferlat;Yves Hingrat;

10.1101/028597 — Ecology — Posted on 2015-10-08

151 clonotypeR--high throughput analysis of T cell antigen receptor sequences

Charles Plessy;Encarnita Mariotti-Ferrandiz;Ri-Ichiroh Manabe;Shohei Hori;

10.1101/028696 — Bioinformatics — Posted on 2015-10-08

152 A segregating inversion generates fitness variation in a yellow monkeyflower (Mimulus guttatus) population

John Kelly;John Willis;Young Wha Lee;Lila Fishman;

10.1101/028670 — Evolutionary Biology — Posted on 2015-10-08

153 Association mapping of inflammatory bowel disease loci to single variant resolution

Hailiang Huang;Ming Fang;Luke Jostins;Masa U Mirkov;Gabrielle Boucher;Carl A Anderson;Vibeke Andersen;Isabelle Cleynen;Adrian Cortes;Francois Crins;Mauro D'Amato;Valerie Deffontaine;Julia Dimitrieva;Elisa Docampo;Mahmoud Elansary;Kyle Kai-How Farh;Andre Franke;Ann-Stephan Gori;Philippe Goyette;Jonas Halfvarson;Talin Haritunians;Jo Knight;Ian C Lawrance;Charlie W Lees;Edouard Louis;Rob Mariman;Theo Meuwissen;Myriam Mni;Yukihide Momozawa;Miles Parkes;Sarah L Spain;Emilie Theatre;Gosia Trynka;Jack Satsangi;Suzanne van Sommeren;Severine Vermeire;Ramnik J Xavier;International IBD Genetics Consortiu

10.1101/028688 — Genetics — Posted on 2015-10-20

154 Association mapping of inflammatory bowel disease loci to single variant resolution

10.1101/028688 — Genetics — Posted on 2015-10-08

155 Evaluating the performance of selection scans to detect selective sweeps in domestic dogs

Florencia Schlamp;Julian van der Made;Rebecca Stambler;Lewis Chesebrough;Adam R Boyko;Philipp W Messer;

10.1101/028647 — Evolutionary Biology — Posted on 2015-10-08

156 Within and among-population variation in vital rates and population dynamics in a variable environment

Simone Vincenzi;Marc Mangel;Dusan Jesensek;John Carlos Garza;Alain J Crivelli;

10.1101/028662 — Ecology — Posted on 2015-10-08

157 Molecular Mechanisms for the Biological Storage of Renewable Energy

Buz Barstow;

10.1101/028381 — Systems Biology — Posted on 2015-10-07

158 Results of an attempt to reproduce the STAP phenomenon

Shin Aizawa;

10.1101/028472 — Cell Biology — Posted on 2015-10-07

159 Efficient Generation and Selection of Virtual Populations in Quantitative Systems Pharmacology Models

Richard Allen;Theodore R Rieger;Cynthia J Musante;

10.1101/028548 — Pharmacology and Toxicology — Posted on 2015-10-06

160 Hemodynamic response function in resting brain: disambiguating neural events and autonomic effects

Guorong Wu;Daniele Marinazzo;

10.1101/028514 — Neuroscience — Posted on 2015-10-06

161 Time-kill curve analysis and pharmacodynamic functions for in vitro evaluation of antimicrobials against Neisseria gonorrhoeae

Sunniva Foerster;Magnus Unemo;Lucy J Hathaway;Nicola Low;Christian L Althaus;

10.1101/028506 — Microbiology — Posted on 2015-10-06

162 Methylation of histone H4 lysine 20 by PR-Set7 ensures the integrity of late replicating sequence domains in Drosophila

Yulong Li;Robin Leigh Armstrong;Robert Duronio;David MacAlpine;

10.1101/028100 — Genomics — Posted on 2015-10-06

163 The interdependent nature of multi-loci associations can be revealed by 4C-Seq

Tingting Jiang;Ramya Raviram;Pedro P Rocha;Valentina Snetkova;Charlotte Proudhon;Sana Badri;Richard Bonneau;Jane A Skok;Yuval Kluger;

10.1101/028555 — Genomics — Posted on 2015-10-12

164 The interdependent nature of multi-loci associations can be revealed by 4C-Seq

Tingting Jiang;Ramya Raviram;Pedro P Rocha;Valentina Snetkova;Charlotte Proudhon;Sana Badri;Richard Bonneau;Jane A Skok;Yuval Kluger;

10.1101/028555 — Genomics — Posted on 2015-10-07

165 The interdependent nature of multi-loci associations can be revealed by 4C-Seq

Tingting Jiang;Ramya Raviram;Pedro P Rocha;Valentina Snetkova;Charlotte Proudhon;Sana Badri;Richard Bonneau;Jane A Skok;Yuval Kluger;

10.1101/028555 — Genomics — Posted on 2015-10-06

166 TP53 copy number expansion correlates with the evolution of increased body size and an enhanced DNA damage response in elephants

Michael Sulak;Lindsey Fong;Katelyn Mika;Sravanthi Chigurupati;Lisa Yon;Nigel P. Mongan;Richard D. Emes;Vincent J. Lynch;

10.1101/028522 — Genetics — Posted on 2015-10-06

167 3D RNA from evolutionary couplings

Caleb Weinreb;Torsten Gross;Chris Sander;Debora S Marks;

10.1101/028456 — Bioinformatics — Posted on 2015-10-06

168 Integrative tissue-specific functional annotations in the human genome provide novel insights on many complex traits and improve signal prioritization in genome wide association studies

Qiongshi Lu;Ryan Lee Powles;Qian Wang;Beixin Julie He;Hongyu Zhao;

10.1101/028464 — Bioinformatics — Posted on 2015-10-06

169 Basset: Learning the regulatory code of the accessible genome with deep convolutional neural networks.

David R Kelley;Jasper Snoek;John Rinn;

10.1101/028399 — Genomics — Posted on 2015-10-05

170 Aquatic insects of a lowland rainforest in Papua New Guinea: assemblage structure in relation to habitat type

Jan Klečka;

10.1101/028423 — Ecology — Posted on 2015-10-05

171 Convergent architecture of the transcriptome of human cancer

Lihua Zou;

10.1101/028415 — Cancer Biology — Posted on 2015-10-05

172 Investigating the importance of anatomical homology for cross-species phenotype comparisons using semantic similarity.

Prashanti Manda;Christopher Mungall;James Balhoff;Hilmar Lapp;Todd Vision;

10.1101/028449 — Bioinformatics — Posted on 2015-10-05

173 Untangling cortico-striatal connectivity and cross-frequency coupling in L-DOPA-induced dyskinesia

Jovana Belic;Per Halje;Ulrike Richter;Per Petersson;Jeanette Hellgren Kotaleski;

10.1101/028027 — Neuroscience — Posted on 2015-10-04

174 Evolving synergetic interactions

Bin Wu;Jordi Arranz;Jinming Du;Da Zhou;Arne Traulsen;

10.1101/028357 — Evolutionary Biology — Posted on 2015-10-05

175 Evolving synergetic interactions

Bin Wu;Jordi Arranz;Jinming Du;Da Zhou;Arne Traulsen;

10.1101/028357 — Evolutionary Biology — Posted on 2015-10-04

176 Mechanisms of blood homeostasis: lineage tracking and a neutral model of cell populations in rhesus macaque

Sidhartha Goyal;Sanggu Kim;Irvin S. Y. Chen;Tom Chou;

10.1101/028167 — Systems Biology — Posted on 2015-10-03

177 A Dynamical Model for the Low Efficiency of Induced Pluripotent Stem Cell Reprogramming

Hussein Abdallah;Domitilla Del Vecchio;Yili Qian;

10.1101/028266 — Systems Biology — Posted on 2015-10-03

178 A Dynamical Model for the Low Efficiency of Induced Pluripotent Stem Cell Reprogramming

Hussein Abdallah;Domitilla Del Vecchio;Yili Qian;

10.1101/028266 — Systems Biology — Posted on 2015-10-03

179 Two phases of aging separated by the Smurf transition as a public path to death

Emilie Dambroise;Lea Monnier;Lu Ruisheng;Hugo Aguilaniu;Jean-Stephane Joly;Herve Tricoire;Michael Rera;

10.1101/028183 — Physiology — Posted on 2015-10-03

180 Inferred Model of the Prefrontal Cortex Activity Unveils Cell Assemblies and Memory Replay

Gaia Tavoni;Ulisse Ferrari;Francesco Paolo Battaglia;Simona Cocco;Rémi Monasson;

10.1101/028316 — Neuroscience — Posted on 2015-10-03

181 Augmentation of nonsense mediated decay by rapamycin

Rocio Teresa Martinez-Nunez;Doyle Coyne;Linnea Jansson;Miles Rush;Hanane Ennajdaoui;Tilman Sanchez-Elsner;Jeremy Sanford;

10.1101/028332 — Molecular Biology — Posted on 2015-10-28

182 Augmentation of nonsense mediated decay by rapamycin

Rocio Teresa Martinez-Nunez;Doyle Coyne;Linnea Jansson;Miles Rush;Hanane Ennajdaoui;Tilman Sanchez-Elsner;Jeremy Sanford;

10.1101/028332 — Molecular Biology — Posted on 2015-10-03

183 Nanopore sequencing detects structural variants in cancer

Alexis L. Norris;Rachael E. Workman;Yunfan Fan;James R. Eshleman;Winston Timp;

10.1101/028290 — Genomics — Posted on 2015-10-04

184 A genome-wide resource for the analysis of protein localisation in Drosophila

Mihail Sarov;Chritiane Barz;Helena Jambor;Marco Y Hein;Christopher Schmied;Dana Suchold;Bettina Stender;Stephan Janosch;Vinay K.J. Vikas;R.T. Krisnan;K. Aishwarya;Irene R.S. Ferreira;Radoslaw K. Ejsmont;Katja Finkl;Susanne Hasse;Philipp Kaempfer;Nicole Plewka;Elisabeth Vinis;Siegfried Schloissnig;Elisabeth Knust;Volker Hartenstein;Matthias Mann;Mani Ramaswami;K. VijayRaghavan;Pavel Tomancak;Frank Schnorrer;

10.1101/028308 — Genomics — Posted on 2015-10-04

185 Gene discovery for Mendelian conditions via social networking: de novo variants in KDM1A cause developmental delay and distinctive facial features

Jessica Chong;Joon-Ho Yu;Peter Lorentzen;Karen Park;Seema M Jamal;Holly K Tabor;Anita Rauch;Margarita Sifuentes Saenz;Eugen Boltshauser;Karynne E Patterson;Deborah A Nickerson;University of Washington Center for Mendelian Geno;Michael J Bamshad;

10.1101/028241 — Genetics — Posted on 2015-10-03

186 Fast and accurate long-range phasing in a UK Biobank cohort

Po-Ru Loh;Pier Francesco Palamara;Alkes L Price;

10.1101/028282 — Genetics — Posted on 2015-10-04

187 Skin transcriptome profiles associated with coat color in goat

Yongdong Peng;Xiaohui Liu;Liying Geng;Chuansheng Zhang;Zhengzhu Liu;Yuanfang Gong;Hongqiang Li;Xianglong Li;

10.1101/028340 — Genetics — Posted on 2015-10-04

188 Mitochondrial introgression suggests extensive ancestral hybridization events among Saccharomyces species

David Peris;Armando Arias;Sandi Orlic;Carmela Belloch;Laura Perez-Traves;Amparo Querol;Eladio Barrio;

10.1101/028324 — Evolutionary Biology — Posted on 2015-10-06

189 Mitochondrial introgression suggests extensive ancestral hybridization events among Saccharomyces species

David Peris;Armando Arias;Sandi Orlic;Carmela Belloch;Laura Perez-Traves;Amparo Querol;Eladio Barrio;

10.1101/028324 — Evolutionary Biology — Posted on 2015-10-04

190 Recent Greater Sage Grouse (Centrocercus urophasianus) Population Dynamics in Wyoming Are Primarily Driven by Climate, not Oil and Gas Development

Rob R. Ramey;Joseph L Thorley;Alexander S Ivey;

10.1101/028274 — Ecology — Posted on 2015-10-04

191 QuicK-mer: A rapid paralog sensitive CNV detection pipeline

Feichen Shen;Jeffrey Kidd;

10.1101/028225 — Bioinformatics — Posted on 2015-10-03

192 SinaPlot: an enhanced chart for simple and truthful representation of single observations over multiple classes

Nikos Sidiropoulos;Sina Hadi Sohi;Nicolas Rapin;Frederik Otzen Bagger;

10.1101/028191 — Bioinformatics — Posted on 2015-10-03

193 Characterising Complex Enzyme Reaction Data

Handan Melike Dönertaş;Sergio Martínez Cuesta;Syed Asad Rahman;Janet M. Thornton;

10.1101/028142 — Bioinformatics — Posted on 2015-10-06

194 Characterising Complex Enzyme Reaction Data

Handan Melike Dönertaş;Sergio Martínez Cuesta;Syed Asad Rahman;Janet M. Thornton;

10.1101/028142 — Bioinformatics — Posted on 2015-10-03

195 Resolving Complex Structural Genomic Rearrangements using a Randomized Approach

Xuefang Zhao;Sarah B. Emery;Bridget Myers;Jeffrey M. Kidd;Ryan E. Mills;

10.1101/028217 — Bioinformatics — Posted on 2015-10-04

196 Beyond Animals and Plants: Dynamic Maternal Effects in the Fungus Neurospora crassa

Kolea C. K. Zimmerman;Daniel A Levitis;Anne Pringle;

10.1101/028092 — Genetics — Posted on 2015-10-02

197 Comparing cancer cell lines and tumor samples by genomic profiles

Rileen Sinha;Nikolaus Schultz;Chris Sander;

10.1101/028159 — Cancer Biology — Posted on 2015-10-02

198 Molecular stripping in the NFκB/IκB/DNA genetic regulatory network

Davit Potoyan;Weihua Zheng;Elizabeth Komives;Peter Wolynes;

10.1101/027912 — Biophysics — Posted on 2015-10-02

199 Complete firing-rate response of neurons with complex intrinsic dynamics

Maximilian A Puelma Touzel;Fred Wolf;

10.1101/028076 — Neuroscience — Posted on 2015-10-02

200 Habitat Fluctuations Drive Species Covariation in the Human Microbiota

Charles K. Fisher;Thierry Mora;Aleksandra M. Walczak;

10.1101/028209 — Microbiology — Posted on 2015-10-02

201 CHiCAGO: Robust Detection of DNA Looping Interactions in Capture Hi-C data

Jonathan Cairns;Paula Freire-Pritchett;Steven W. Wingett;Csilla Várnai;Andrew Dimond;Vincent Plagnol;Daniel Zerbino;Stefan Schoenfelder;Biola-Maria Javierre;Cameron Osborne;Peter Fraser;Mikhail Spivakov;

10.1101/028068 — Genomics — Posted on 2015-10-05

202 CHiCAGO: Robust Detection of DNA Looping Interactions in Capture Hi-C data

10.1101/028068 — Genomics — Posted on 2015-10-01

203 A robust example of collider bias in a genetic association study

Felix Day;Robert Scott;Ken Ong;John Perry;

10.1101/028035 — Genomics — Posted on 2015-10-01

204 A glance at recombination hotspots in the domestic cat

Hasan Alhaddad;Chi Zhang;Bruce Rannala;Leslie A Lyons;

10.1101/028043 — Genetics — Posted on 2015-10-01

205 Deep learning for population genetic inference

Sara Sheehan;Yun S. Song;

10.1101/028175 — Evolutionary Biology — Posted on 2015-10-02

206 From concept to clinic: mathematically informed immunotherapy

Rachel Walker;Heiko Enderling;

10.1101/027979 — Cancer Biology — Posted on 2015-10-01

207 Extracellular Forces Cause the Nucleus to Deform in a Highly Controlled Anisotropic Manner

Kristina Haase;Joan K. L. Macadangdang;Claire H. Edrington;Charles M. Cuerrier;Sebastian Hadjiantoniou;James L. Harden;Ilona S. Skerjanc;Andrew E. Pelling;

10.1101/027888 — Biophysics — Posted on 2015-10-01

208 Indel variant analysis of short-read sequencing data with Scalpel

Han Fang;Ewa A. Grabowska;Kanika Arora;Vladimir Vacic;Michael C. Zody;Ivan Iossifov;Jason A. ORawe;Yiyang Wu;Laura T Jimenez Barron;Julie Rosenbaum;Michael Ronemus;Yoon-ha Lee;Zihua Wang;Gholson J. Lyon;Michael Wigler;Michael C. Schatz;Giuseppe Narzisi;

10.1101/028050 — Bioinformatics — Posted on 2015-10-01

209 in silico Whole Genome Sequencer & Analyzer (iWGS): a computational pipeline to guide the design and analysis of de novo genome sequencing studies

Xiaofan Zhou;David Peris;Jacek Kominek;Cletus P Kurtzman;Chris Todd Hittinger;Antonis Rokas;

10.1101/028134 — Bioinformatics — Posted on 2015-10-02

210 DoOR 2.0 - Comprehensive Mapping of Drosophila melanogaster Odorant Responses

Daniel Muench;C. Giovanni Galizia;

10.1101/027920 — Neuroscience — Posted on 2015-10-01

211 Neuronal actin dynamics, spine density and neuronal dendritic complexity are regulated by CAP2

Atul Kumar;Lars Paeger;Kosmas Kosmas;Peter Kloppenburg;Angelika Noegel;Vivek Peche;

10.1101/027946 — Neuroscience — Posted on 2015-10-01

212 Stochastic Analysis Of An Incoherent Feedforward Genetic Motif

Thierry Platini;Mohammad Soltani;Abhyudai Singh;

10.1101/028019 — Molecular Biology — Posted on 2015-10-03

213 Stochastic Analysis Of An Incoherent Feedforward Genetic Motif

Thierry Platini;Mohammad Soltani;Abhyudai Singh;

10.1101/028019 — Molecular Biology — Posted on 2015-10-01

214 Genetic evidence that lower circulating FSH levels lengthen menstrual cycle, increase age at menopause, and impact reproductive health: a UK Biobank study

Katherine S Ruth;Robin N Beaumont;Jessica Tyrrell;Samuel E Jones;Marcus A Tuke;Hanieh Yaghootkar;Andrew R Wood;Rachel M Freathy;Michael N Weedon;Timothy M Frayling;Anna Murray;

10.1101/028001 — Genetics — Posted on 2015-10-19

215 Genetic evidence that lower circulating FSH levels lengthen menstrual cycle, increase age at menopause, and impact reproductive health: a UK Biobank study

Katherine S Ruth;Robin N Beaumont;Jessica Tyrrell;Samuel E Jones;Marcus A Tuke;Hanieh Yaghootkar;Andrew R Wood;Rachel M Freathy;Michael N Weedon;Timothy M Frayling;Anna Murray;

10.1101/028001 — Genetics — Posted on 2015-10-01

216 Detecting and quantifying changing selection intensities from time-sampled polymorphism data

Hyunjin Shim;Stefan Laurent;Matthieu Foll;Jeffrey Jensen;

10.1101/027961 — Evolutionary Biology — Posted on 2015-10-01

217 PHYLUCE is a software package for the analysis of conserved genomic loci

Brant C Faircloth;

10.1101/027904 — Bioinformatics — Posted on 2015-10-30

218 PHYLUCE is a software package for the analysis of conserved genomic loci

Brant C Faircloth;

10.1101/027904 — Bioinformatics — Posted on 2015-10-01

219 Sphinx: modeling transcriptional heterogeneity in single-cell RNA-Seq

Jinghua Gu;Qiumei Du;Xuan Wang;Pingjian Yu;Wei Lin;

10.1101/027870 — Bioinformatics — Posted on 2015-10-01

220 TRPA1 tunes mosquito thermotaxis to host temperatures

Roman A Corfas;Leslie B Vosshall;

10.1101/027896 — Neuroscience — Posted on 2015-10-05

221 Understanding biases in ribosome profiling experiments reveals signatures of translation dynamics in yeast

Jeffrey A Hussmann;Stephanie Patchett;Arlen Johnson;Sara Sawyer;William H Press;

10.1101/027938 — Genomics — Posted on 2015-10-01

222 Behavioral flexibility and problem solving in an invasive bird

Corina J Logan;

10.1101/027706 — Animal Behavior and Cognition — Posted on 2015-10-06

223 Design of the TRONCO BioConductor Package for TRanslational ONCOlogy

Marco Antoniotti;Giulio Caravagna;Luca De Sano;Alex Graudenzi;Giancarlo Mauri;Bud Mishra;Daniele Ramazzotti;

10.1101/027524 — Bioinformatics — Posted on 2015-10-22

224 Accelerating gene discovery by phenotyping whole-genome sequenced multi- mutation strains and using the sequence kernel association test (SKAT)

Tiffany A Timbers;Stephanie J Garland;Swetha Mohan;Stephane Flibotte;Mark Edgley;Quintin Muncaster;Vinci Au;Erica Li-Leger;Federico Rosell;Jerry Cai;Suzanne Rademakers;Gert Jansen;Donald G Moerman;Michel R Leroux;

10.1101/027540 — Genomics — Posted on 2015-10-22

225 Algorithmic Methods to Infer the Evolutionary Trajectories in Cancer Progression

Giulio Caravagna;Alex Graudenzi;DANIELE RAMAZZOTTI;Rebeca Sanz-Pamplona;Luca De Sano;Giancarlo Mauri;Victor Moreno;Marco Antoniotti;Bud Mishra;

10.1101/027359 — Bioinformatics — Posted on 2015-10-06

226 TRONCO: an R package for the inference of cancer progression models from heterogeneous genomic data

Luca De Sano;Giulio Caravagna;DANIELE RAMAZZOTTI;Alex Graudenzi;Giancarlo Mauri;Bud Mishra;Marco Antoniotti;

10.1101/027474 — Bioinformatics — Posted on 2015-10-13

227 Plasticity-Driven Self-Organization under Topological Constraints Accounts for Non-Random Features of Cortical Synaptic Wiring.

Daniel Miner;Jochen Triesch;

10.1101/027268 — Neuroscience — Posted on 2015-10-01

228 Cortical idiosyncrasies predict the perception of object size

Christina Moutsiana;Benjamin de Haas;Andriani Papageorgiou;Jelle A van Dijk;Annika Balraj;John A Greenwood;D. Sam Schwarzkopf;

10.1101/026989 — Neuroscience — Posted on 2015-10-23

229 Construction of the third generation Zea mays haplotype map

Robert Bukowski;Xiaosen Guo;Yanli Lu;Cheng Zou;Bing He;Zhengqin Rong;Bo Wang;Dawen Xu;Bicheng Yang;Chuanxiao Xie;Longjiang Fan;Shibin Gao;Xun Xu;Gengyun Zhang;Yingrui Li;Yinping Jiao;John Doebley;Jeffrey Ross-Ibarra;Vince Buffalo;Cinta M Romay;Edward S Buckler;Yunbi Xu;Jinsheng Lai;Doreen Ware;Qi Sun;

10.1101/026963 — Bioinformatics — Posted on 2015-10-06

230 RNA polymerase errors cause splicing defects and can be regulated by differential expression of RNA polymerase subunits

Lucas B Carey;

10.1101/026799 — Genomics — Posted on 2015-10-26

231 RNA polymerase errors cause splicing defects and can be regulated by differential expression of RNA polymerase subunits

Lucas B Carey;

10.1101/026799 — Genomics — Posted on 2015-10-17

232 RNA polymerase errors cause splicing defects and can be regulated by differential expression of RNA polymerase subunits

Lucas B Carey;

10.1101/026799 — Genomics — Posted on 2015-10-17

233 Genetic structure of the stingless bee Tetragonisca angustula

Flavio O Francisco;Leandro R Santiago;Yuri M Mizusawa;Benjamin P Oldroyd;Maria C Arias;

10.1101/026740 — Evolutionary Biology — Posted on 2015-10-08

234 Changes in Forest Composition, Stem Density, and Biomass from the Settlement Era (1800s) to Present in the Upper Midwestern United States

Simon Goring;David J Mladenoff;Charles V Cogbill;Sydne Record;Christopher J Paciorek;Stephen T Jackson;Michael Dietze;Andria Dawson;Jaclyn Matthes;Jason S McLachlan;John W Williams;

10.1101/026575 — — Posted on 2015-10-24

235 Decomposing variability in protein levels from noisy expression, genome duplication and partitioning errors during cell-divisions

Mohammad Soltani;Cesar Augusto Vargas-Garcia;Duarte Antunes;Abhyudai Singh;

10.1101/026559 — Systems Biology — Posted on 2015-10-03

236 Growing neuronal islands on multi-electrode arrays using an Accurate Positioning-μCP device

Robert Samhaber;Manuel Schottdorf;Ahmed El Hady;Kai Broeking;Andreas Daus;Christiane Thielemann;Walter Stuehmer;Fred Wolf;

10.1101/026401 — Bioengineering — Posted on 2015-10-01

237 HacDivSel: Two new methods (haplotype-based and outlier-based) for the detection of divergent selection in pairs of populations

Antonio Carvajal-Rodríguez;

10.1101/026369 — Evolutionary Biology — Posted on 2015-10-24

238 Mechanistic modelling and Bayesian inference elucidates the variable dynamics of double-strand break repair

Chris P Barnes;Mae Woods;

10.1101/026070 — Systems Biology — Posted on 2015-10-05

239 Social inheritance can explain the structure of animal social networks

Amiyaal Ilany;Erol Akcay;

10.1101/026120 — Animal Behavior and Cognition — Posted on 2015-10-19

240 Landscape structure and management alter the outcome of a pesticide ERA: evaluating impacts of endocrine disruption using the ALMaSS European Brown Hare model

Chris J. Topping;Lars Dalby;Flemming Skov;

10.1101/025833 — Systems Biology — Posted on 2015-10-08

241 Mapping quantitative trait loci underlying function-valued traits using functional principal component analysis and multi-trait mapping

Il-Youp Kwak;Candace R. Moore;Edgar P. Spalding;Karl W Broman;

10.1101/025577 — Genetics — Posted on 2015-10-26

242 Differential transcript usage from RNA-seq data: isoform pre-filtering improves performance of count-based methods

Charlotte Soneson;Katarina L Matthes;Malgorzata Nowicka;Charity W Law;Mark D Robinson;

10.1101/025387 — Bioinformatics — Posted on 2015-10-13

243 Whole genome sequencing of field isolates reveals extensive genetic diversity in Plasmodium vivax from Colombia

David J Winter;Maria A Pacheco;Andres Felipe A Vallejo;Rachel S. Schwartz;Myriam Arevalo-Herrera;Socrates Herrera;Reed Cartwright;Ananias Escalante;

10.1101/025338 — Genomics — Posted on 2015-10-29

244 A statistical approach reveals designs for the most robust stochastic gene oscillators

Mae Woods;Miriam Leon;Ruben Perez-Carrasco;Chris P Barnes;

10.1101/025056 — Synthetic Biology — Posted on 2015-10-19

245 R2d2 drives selfish sweeps in the house mouse

John P Didion;Andrew Parker Morgan;Liran Yadgary;Timothy A Bell;Rachel Clara McMullan;Lydia Ortiz de Solorzano;Janice Britton-Davidian;Carol J Bult;Karl J Campbell;Riccardo Castiglia;Yung-Hao Ching;Amanda J Chunco;James J Crowley;Elissa J Chesler;John E French;Sofia I Gabriel;Daniel M Gatti;Theodore Garland;Eva B Giagia-Athanasopoulou;Mabel D Giménez;Sofia A Grize;İslam Gündüz;Andrew Holmes;Heidi C Hauffe;Jeremy S Herman;James M Holt;Kunji Hua;Wesley J Jolley;Anna K Lindholm;María J López-Fuster;George Mitsainas;Maria Mathias;Leonard McMillan;M Graça Ramalhinho;Barbara Rehermann;Stephan P Ross

10.1101/024851 — Genetics — Posted on 2015-10-14

246 Reduced Glucose Sensation Can Increase the Fitness of Saccharomyces cerevisiae Lacking Mitochondrial DNA

Emel Akdoğan;Mehmet Tardu;Görkem Garipler;Gülkız Baytek;İbrahim Halil Kavaklı;Cory D. Dunn;

10.1101/024331 — Genetics — Posted on 2015-10-20

247 Structure and conformational states of the bovine mitochondrial ATP synthase by cryo-EM

Anna Zhou;Alexis Rohou;Daniel G Schep;John V Bason;Martin G Montgomery;John E Walker;Nikolaus Grigorieff;John L Rubinstein;

10.1101/023770 — Biochemistry — Posted on 2015-10-01

248 A method to estimate the contribution of regional genetic associations to complex traits from summary association statistics

Guillaume Pare;Shihong Mao;Wei Deng;

10.1101/024067 — Genetics — Posted on 2015-10-26

249 Learning the human chromatin network from all ENCODE ChIP-seq data

Scott M. Lundberg;William B. Tu;Brian Raught;Linda Z. Penn;Michael M. Hoffman;Su-In Lee;

10.1101/023911 — Genomics — Posted on 2015-10-01

250 Genome-Wide Scan for Adaptive Divergence and Association with Population-Specific Covariates

mathieu gautier;

10.1101/023721 — Genetics — Posted on 2015-10-02

251 destiny – diffusion maps for large-scale single-cell data in R

Philipp Angerer;Laleh Haghverdi;Maren Büttner;Fabian Theis;Carsten Marr;Florian Buettner;

10.1101/023309 — Bioinformatics — Posted on 2015-10-09

252 Purging of deleterious variants due to drift and founder effect in Italian populations with extended autozygosity

Massimiliano Cocca;Marc Pybus;Pier Francesco Palamara;Erik Garrison;Michela Traglia;Cinzia F Sala;Sheila Ulivi;Yasin Memari;Anja Kolb-Kokocinski;Shane McCarthy;Richard Durbin;Paolo Gasparini;Daniela Toniolo;Nicole Soranzo;Vincenza Colonna;

10.1101/022947 — Evolutionary Biology — Posted on 2015-10-12

253 Unearthing the microbial ecology of soil carbon cycling with DNA-SIP

Charles Pepe-Ranney;Ashley N Campbell;Chantal Koechli;Sean T Berthrong;Daniel H Buckley;

10.1101/022483 — Microbiology — Posted on 2015-10-07

254 Cancer evolution simulation identifies possible principles underlying intratumor heterogeneity

Atsushi Niida;Satoshi Ito;Georg Tremmel;Seiya Imoto;Ryutaro Uchi;Yusuke Takahashi;Koshi Mimori;Satoru Miyano;

10.1101/022806 — Cancer Biology — Posted on 2015-10-14

255 A New Method to Detect Event-Related Potentials Based on Pearson’s Correlation

Patrizio Tressoldi;William Giroldini;Luciano Pederzoli;Marco Bilucaglia;Simone Melloni;

10.1101/022046 — Neuroscience — Posted on 2015-10-09

256 Life history evolution in response to changes in metapopulation structure in an arthropod herbivore

Annelies De Roissart;Nicky Wybouw;David Renault;Thomas Van Leeuwen;Dries Bonte;

10.1101/021683 — Evolutionary Biology — Posted on 2015-10-09

257 Salmon provides accurate, fast, and bias-aware transcript expression estimates using dual-phase inference

Rob Patro;Geet Duggal;Michael I Love;Rafael A Irizarry;Carl Kingsford;

10.1101/021592 — Bioinformatics — Posted on 2015-10-03

258 Variability in group size and the evolution of collective action

Jorge Peña;Georg Nöldeke;

10.1101/021485 — Evolutionary Biology — Posted on 2015-10-07

259 Synthetic datasets and community tools for the rapid testing of ecological hypotheses

Timothee Poisot;Dominique Gravel;Shawn Leroux;Spencer A Wood;Marie-Josée Fortin;Benjamin Baiser;Alyssa R Cirtwill;Miguel B Araujo;Daniel B Stouffer;

10.1101/021402 — Ecology — Posted on 2015-10-09

260 Discrete Distributional Differential Expression (D3E) - A Tool for Gene Expression Analysis of Single-cell RNA-seq Data

Mihails Delmans;Martin Hemberg;

10.1101/020735 — Bioinformatics — Posted on 2015-10-29

261 Expression of E. coli glycogen branching enzyme in an Arabidopsis mutant devoid of endogenous starch branching enzymes induces the synthesis of starch-like polyglucans

Laura Boyer;Xavier Roussel;Adeline Courseaux;Ofilia Mvundza Ndjindji;Christine Lancelon-Pin;Jean-Luc Putaux;Ian Tetlow;Michael Emes;Bruno Pontoire;Christophe D'Hulst;Fabrice Wattebled;

10.1101/019976 — Plant Biology — Posted on 2015-10-29

262 Distance from Sub-Saharan Africa Predicts Mutational Load in Diverse Human Genomes

Brenna M. Henn;Laura R Botigue;Stephan Peischl;Isabelle Dupanloup;Mikhail Lipatov;Brian K Maples;Alicia R Martin;Shaila Musharoff;Howard Cann;Michael Snyder;Laurent Excoffier;Jeffrey Kidd;Carlos D Bustamante;

10.1101/019711 — Genomics — Posted on 2015-10-23

263 A flexible, efficient binomial mixed model for identifying differential DNA methylation in bisulfite sequencing data

Amanda J Lea;Jenny Tung;Xiang Zhou;

10.1101/019562 — Genomics — Posted on 2015-10-14

264 Genetic interactions contribute less than additive effects to quantitative trait variation in yeast

Joshua S Bloom;Iulia Kotenko;Meru J Sadhu;Sebastian Treusch;Frank W Albert;Leonid Kruglyak;

10.1101/019513 — Genetics — Posted on 2015-10-08

265 A Novel Mechanism for Color Vision: Pupil Shape and Chromatic Aberration Can Provide Spectral Discrimination for Color Blind Organisms.

Alexander L Stubbs;Christopher W Stubbs;

10.1101/017756 — Biophysics — Posted on 2015-10-26

266 An evaluation of the accuracy and speed of metagenome analysis tools

Stinus Lindgreen;Karen L Adair;Paul Gardner;

10.1101/017830 — Bioinformatics — Posted on 2015-10-28

267 Phenotypic Covariation And Morphological Diversification In The Ruminant Skull

Annat Haber;

10.1101/017533 — Evolutionary Biology — Posted on 2015-10-22

268 Variation in rural African gut microbiota is strongly correlated with colonization by Entamoeba and subsistence

Elise R Morton;Joshua Lynch;Alain Froment;Sophie Lafosse;Evelyne Heyer;Molly Przeworski;Ran Blekhman;Laure Segurel;

10.1101/016949 — Microbiology — Posted on 2015-10-07

269 Efficient strategies for calculating blockwise likelihoods under the coalescent

Konrad Lohse;Martin Chmelik;Simon Henry Martin;Nick H Barton;

10.1101/016469 — Genetics — Posted on 2015-10-27

270 Eight thousand years of natural selection in Europe

Iain Mathieson;Iosif Lazaridis;Nadin Rohland;Swapan Mallick;Nick Patterson;Songul Alpaslan Roodenberg;Eadaoin Harney;Kristin Stewardson;Daniel Fernandes;Mario Novak;Kendra Sirak;Cristina Gamba;Eppie R. Jones;Bastien Llamas;Stanislav Dryomov;Joseph Pickrell;Juan Luis Arsuaga;Jose Maria Bermudez de Castro;Eudald Carbonell;Fokke Gerritsen;Aleksandr Khokhlov;Pavel Kuznetsov;Marina Lozano;Harald Meller;Oleg Mochalov;Vayacheslav Moiseyev;Manuel A. Rojo Guerra;Jacob Roodenberg;Josep Maria Verges;Johannes Krause;Alan Cooper;Kurt W. Alt;Dorcas Brown;David Anthony;Carles Lalueza-Fox;Wolfgang Haak;Ron Pi