bioRxiv directory

Pierce, N. T.; Irber, L.; Reiter, T.; Brooks, P.; Brown, C. T.

10.1101/687285 — bioinformatics — Posted on 2019-06-30

3 Trans- and cis-acting effects of the lncRNA Firre on epigenetic and structural features of the inactive X chromosome

FANG, H.; Bonora, G.; Lewandowski, J.; Thakur, J.; Filippova, G. N.; Henikoff, S.; Shendure, J.; Duan, Z.; Rinn, J.; Deng, X.; Noble, W. S.; Disteche, C. M.

10.1101/687236 — genomics — Posted on 2019-06-30

4 Development of a Surface Programmable Activation Receptor system (SPAR): A living cell biosensor for rapid pathogen detection

Kittle, J. D.; Lwande, J. S.; Williams, M. R.; Brody, R.; Frenchmeyer, M.; Hua, J.; Liang, S.; McQuaide, K.; Mo, M.; Neese, A.; Tang, Y.; Vedamoorthy, S.; Zeng, L.; Zupancic, T.; McBrairty, C.

10.1101/687426 — bioengineering — Posted on 2019-06-30

5 Developing critical thinking in STEM education through inquiry-based writing in the laboratory classroom

Jeon, A. J.; Kellogg, D.; Khan, M. A.; Tucker-Kellogg, G.

10.1101/686022 — scientific communication and education — Posted on 2019-06-30

6 The Toxin Antitoxin MazEF Drives Staphylococcus aureus Chronic Infection

Ma, D.; Mandell, J. B.; Donegan, N. P.; Cheung, A. L.; Ma, W.; Rothenberger, S.; Shanks, R. M.; Richardson, A. R.; Urish, K. L.

10.1101/687434 — microbiology — Posted on 2019-06-30

7 Macrobdella decora: Old World Leech Gut Microbial Community Structure Conserved in a New World Leech

McClure, E. A.; Nelson, M. C.; Lin, A.; Graf, J.

10.1101/687418 — microbiology — Posted on 2019-06-30

8 POT-1 telomere binding protein promotes a novel form of Transgenerational Epigenetic Inheritance

Lister-Shimauchi, E.; Dinh, M.; Maddox, P.; Ahmed, S.

10.1101/687988 — genetics — Posted on 2019-06-30

9 Mapping gene flow between ancient hominins through demography-aware inference of the ancestral recombination graph

Hubisz, M. J.; Williams, A. L.; Siepel, A.

10.1101/687368 — evolutionary biology — Posted on 2019-06-30

10 Systematic phenomics analysis of ASD-associated genes reveals shared functions and parallel networks underlying reversible impairments in habituation learning

McDiarmid, T. A.; Belmadani, M.; Liang, j.; Meili, F.; Mathews, E. A.; Mullen, G. P.; Rand, J. B.; Mizumoto, K.; Haas, K.; Pavlidis, P.; Rankin, C. H.

10.1101/687194 — neuroscience — Posted on 2019-06-30

11 Chemogenetic silencing of neurons in the mouse anterior cingulate area modulates neuronal activity and functional connectivity

Peeters, L. M.; Hinz, R.; Detrez, J. R.; Missault, S.; De Vos, W. H.; Verhoye, M.; Van der Linden, A.; Keliris, G. A.

10.1101/686725 — neuroscience — Posted on 2019-06-30

12 CSF sTREM2 correlates with CSF tau in advancing Parkinson’s disease

Wilson, E. N.; Swarovski, M. S.; Linortner, P.; Shahid, M.; Zuckerman, A. J.; Wang, Q.; Channappa, D.; Minhas, P. S.; Mhatre, S. D.; Plowey, E. D.; Quinn, J. F.; Zabetian, C. P.; Tian, L.; Longo, F. M.; Cholerton, B.; Montine, T. J.; Poston, K. L.; Andreasson, K. I.

10.1101/687269 — neuroscience — Posted on 2019-06-30

13 Ranking of Major Classes of Antibiotics for Activity against Stationary Phase Pseudomonas aeruginosa and Identification of Clinafloxacin + Cefuroxime + Gentamicin Drug Combination that Eradicates Persistent P. aeruginosa Infection in a Murine Cystic Fibrosis Model

Yuan, Y.; Yee, R.; Gour, N.; Dong, X.; Feng, J.; Shi, W.; Zhang, Y.

10.1101/686105 — microbiology — Posted on 2019-06-30

14 Discovering functional sequences with RELICS, an analysis method for CRISPR regulatory screens

Fiaux, P. C.; Chen, H.; McVicker, G.

10.1101/687293 — bioinformatics — Posted on 2019-06-30

15 Layer-by-Layer Fabrication of 3D Hydrogel Structures Using Open Microfluidics

Lee, U. N.; Day, J. H.; Haack, A. J.; Lu, W.; Theberge, A. B.; Berthier, E.

10.1101/687251 — bioengineering — Posted on 2019-06-30

16 Mechanical effects of MitraClip on leaflet stress and myocardial strain in functional mitral regurgitation: A finite element modeling study.

Zhang, Y.; Wang, V. Y.; Morgan, A. E.; Kim, J.; Handschumacher, M. D.; Moskowitz, C. S.; Levine, R. A.; Ge, L.; Guccione, J. M.; Weinsaft, J. W.; Ratcliffe, M. B.

10.1101/687004 — bioengineering — Posted on 2019-06-30

17 Power series method for solving TASEP-based models of mRNA translation

Scott, S.; Szavits-Nossan, J.

10.1101/687335 — biophysics — Posted on 2019-06-30

18 The drift diffusion model as the choice rule in inter-temporal and risky choice: a case study in medial orbitofrontal cortex lesion patients and controls.

Peters, J.; D'Esposito, M.

10.1101/642587 — neuroscience — Posted on 2019-06-30

19 Molecular estimation of neurodegeneration pseudotime in older brains

Mukherjee, S.; Preuss, C.; Jayadev, S.; Garden, G. A.; Greenwood, A. K.; Sieberts, S. K.; De Jager, P. L.; Ertekin-Taner, N.; Carter, G. W.; Mangravite, L. M.; Logsdon, B.

10.1101/686824 — neuroscience — Posted on 2019-06-30

20 Making ATP fast and slow: do yeasts play a mixed strategy to metabolize glucose?

Safdari, H.; Sadeghi, M.; Kalirad, A.

10.1101/540757 — systems biology — Posted on 2019-06-30

21 Functional Analysis of FRIGIDA Using Naturally Occurring Variation in Arabidopsis thaliana

Zhang, L.; Jimenez-Gomez, J. M.

10.1101/677468 — plant biology — Posted on 2019-06-30

22 Adaptation of mammalian myosin II sequences to body mass

McGreig, J. E.; Jeanfavre, S. T.; Henson, C.; Coghlan, M.; Walklate, J.; Ridout, M. S.; Baines, A. J.; Geeves, M. A.; Wass, M. N.

10.1101/055434 — evolutionary biology — Posted on 2019-06-30

23 A stable pollination environment limits current but not potential evolution of floral traits

Castellanos, M. C.; Montero-Pau, J.; Ziarsolo, P.; Blanca, J. M.; Canizares, J.; Pausas, J. G.

10.1101/581827 — evolutionary biology — Posted on 2019-06-30

24 NINscope: a versatile miniscope for multi-region circuit investigations

de Groot, A.; van den Boom, B. J. G.; van Genderen, R. M.; Coppens, J.; van Veldhuijzen, J.; Bos, J.; Hoedemaker, H.; Negrello, M.; Willuhn, I.; De Zeeuw, C. I.; Hoogland, T. M.

10.1101/685909 — neuroscience — Posted on 2019-06-30

25 Wakefulness state modulates conscious access: Suppression of auditory detection in the transition to sleep

Noreika, V.; Canales-Johnson, A.; Johnson, A.; Arnatkeviciute, A.; Koh, J.; Chennu, S.; Bekinschtein, T. A.

10.1101/155705 — neuroscience — Posted on 2019-06-30

26 Progressive Alignment of Inhibitory and Excitatory Delay May Drive a Rapid Developmental Switch in Cortical Network Dynamics

Romagnoni, A.; Colonnese, M.; Touboul, J.; Gutkin, B.

10.1101/296673 — neuroscience — Posted on 2019-06-30

27 A reproductive arrest program triggered by defects in Piwi and germ granules

Spichal, M.; Heestand, B.; Kretovich Billmyre, K.; Frenk, S.; Ahmed, S.

10.1101/276782 — developmental biology — Posted on 2019-06-30

28 Wide-field time-gated SPAD imager for phasor-based FLIM applications

Ulku, A. C.; Ardelean, A.; Antolovic, I. M.; weiss, s.; Charbon, E.; Bruschini, C.; Michalet, X.

10.1101/687277 — biophysics — Posted on 2019-06-30

29 Local frustration determines loop opening in protein-protein association

Stelzl, L. S.; Mavridou, D. A. I.; Baldwin, A.; Ferguson, S. J.; Sansom, M.; Redfield, C.

10.1101/686949 — biophysics — Posted on 2019-06-30

30 Rqc2 levels alter CAT tail composition, function, and toxicity in S. cerevisiae

Sitron, C. S.; Park, J. H.; Giafaglione, J. M.; Brandman, O.

10.1101/687319 — cell biology — Posted on 2019-06-30

31 Peroxiredoxin promotes longevity and H2O2-resistance in yeast through redox-modification of PKA

Molin, M.; Roger, F.; Picazo, C.; Asami, C.; Reiter, W.; Hanzen, S.; Gao, C.; Lagniel, G.; Welkenhuysen, N.; Labarre, J.; Nyström, T.; Grotli, M.; Hartl, M.

10.1101/676270 — biochemistry — Posted on 2019-06-30

32 Noradrenergic but not dopaminergic neurons signal task state changes and predict re-engagement after a failure

Jahn, C.; Varazzani, C.; Sallet, J.; Walton, M. E.; Bouret, S.

10.1101/686428 — neuroscience — Posted on 2019-06-30

33 Molecular tuning of the axonal mitochondrial Ca2+ uniporter ensures metabolic flexibility of neurotransmission

Ashrafi, G.; de Juan-Sanz, J.; Farrell, R.; Ryan, T. A.

10.1101/685859 — neuroscience — Posted on 2019-06-29

34 Monosomes actively translate synaptic mRNAs in neuronal processes

Biever, A.; Glock, C.; Tushev, G.; Ciirdaeva, E.; Langer, J. D.; Schuman, E. M.

10.1101/687475 — neuroscience — Posted on 2019-06-29

35 Homo- and heterodimerization of bHLH transcription factors balance stemness and bipotential differentiation

Puig-Barbe, A.; de Navascues, J.

10.1101/685347 — developmental biology — Posted on 2019-06-29

36 One-shot tagging during wake and cueing during sleep with spatiotemporal patterns of transcranial electrical stimulation can boost long-term metamemory of individual episodes in humans

Pilly, P. K.; Skorheim, S. W.; Hubbard, R. J.; Ketz, N. A.; Roach, S. M.; Jones, A. P.; Robert, B.; Bryant, N. B.; Lerner, I.; Hartholt, A.; Mullins, T. S.; Choe, J.; Clark, V. P.; Howard, M. D.

10.1101/672378 — neuroscience — Posted on 2019-06-29

37 Prefrontal Cortex Regulates Chronic Stress-Induced Cardiovascular Susceptibility

Schaeuble, D.; Packard, A. E. B.; McKlveen, J. M.; Morano, R. L.; Fourman, S.; Smith, B. L.; Scheimann, J. R.; Packard, B. A.; Wilson, S. P.; James, J.; Hui, D. Y.; Ulrich-Lai, Y. M.; Herman, J. P.; Myers, B.

10.1101/675835 — neuroscience — Posted on 2019-06-29

38 Quantitation of vector uptake reveals non-Poissonian transfection dynamics in Plasmodium falciparum

Carrasquilla, M.; Sanderson, T.; Montadon, R.; Rayner, J.; Pance, A.; Lee, M.

10.1101/681981 — microbiology — Posted on 2019-06-29

39 Network-wide abnormalities explain memory variability in hippocampal amnesia

Argyropoulos, G. P. D.; Loane, C.; Roca-Fernandez, A.; Lage-Martinez, C.; Gurau, O.; Irani, S. R.; Butler, C. R.

10.1101/551812 — neuroscience — Posted on 2019-06-29

40 Occurrence of marine sponge Chelonaplysilla delicata Pulitzer-Finali & Pronzato, 1999 (Porifera: Demospongiae: Darwinellidae) from the Andaman Islands and the Indian Ocean with a baseline information of epifauna on a mesophotic shipwreck

Das, R. R.; Immanuel, T.; Lakra, R. K.; Baath, K.; Thiruchitrambalam, G.

10.1101/636043 — ecology — Posted on 2019-06-29

41 Plasmodium Kinesin-8X associates with mitotic spindles and is essential for oocyst development during parasite proliferation and transmission

Zeeshan, M.; Shilliday, F.; Liu, T.; Abel, S.; Mourier, T.; Ferguson, D. J. P.; Rea, E.; Stanway, R. R.; Roques, M.; Williams, D.; Daniel, E.; Brady, D.; Roberts, A. J.; Holder, A. A.; Pain, A.; Le Roch, K. G.; Moores, C. A.; Tewari, R.

10.1101/665836 — cell biology — Posted on 2019-06-29

42 Apolipoprotein L9 interacts with LC3/GABARAP and is a microtubule-associated protein with a widespread subcellular distribution

Thekkinghat, A. A.; Yadav, K. K.; Rangarajan, P. N.

10.1101/671065 — cell biology — Posted on 2019-06-29

43 The genome of the blind soil-dwelling and ancestrally wingless dipluran Campodea augens, a key reference hexapod for studying the emergence of insect innovations

Manni, M.; Simao, F. A.; Robertson, H. M.; Gabaglio, M. A.; Waterhouse, R. M.; Misof, B.; Niehuis, O.; Szucsich, N. U.; Zdobnov, E. M.

10.1101/585695 — genomics — Posted on 2019-06-29

44 Cryptococcus neoformans resists to drastic conditions by switching to viable but non-culturable cell phenotype

Hommel, B.; Sturny-Leclere, A.; Volant, S.; Veluppillai, N.; Duchateau, M.; Yu, C.-H.; Hourdel, V.; Varet, H.; Matondo, M.; Perfect, J. R.; Casadevall, A.; Dromer, F.; Alanio, A.

10.1101/552836 — microbiology — Posted on 2019-06-29

45 Unique-region phosphorylation targets LynA for rapid degradation, tuning its expression and signaling in myeloid cells

Brian, B. F.; Nunez, M. G.; Schwertfeger, K. L.; Freedman, T. S.

10.1101/550053 — biochemistry — Posted on 2019-06-29

46 Revisiting tradeoffs between Rubisco kinetic parameters

Flamholz, A. I.; Prywes, N.; Moran, U.; Davidi, D.; Bar-On, Y.; Oltrogge, L.; Alves, R.; Savage, D.; Milo, R.

10.1101/470021 — systems biology — Posted on 2019-06-29

47 Cellular heterogeneity in pressure and growth emerges from tissue topology and geometry

Long, Y.; Cheddadi, I.; Mirabet, V.; Mosca, G.; Dumond, M.; Traas, J.; Godin, C.; Boudaoud, A.

10.1101/334664 — biophysics — Posted on 2019-06-29

48 Indirect sexual selection drives rapid sperm protein evolution

Wilburn, D. B.; Tuttle, L. M.; Klevit, R. E.; Swanson, W. J.

10.1101/682062 — biochemistry — Posted on 2019-06-29

49 Engineered full-length Fibronectin-based hydrogels sequester and present growth factors to promote regenerative responses in vitro and in vivo

Trujillo, S.; Gonzalez-Garcia, C.; Rico, P.; Reid, A.; Windmill, J.; Dalby, M. J.; Salmeron-Sanchez, M.

10.1101/687244 — bioengineering — Posted on 2019-06-29

50 The development and characterization of an scFv-Fc fusion based gene therapy to reduce the psychostimulant effects of methamphetamine abuse

Hay, C. E.; Ewing, L. E.; Hambuchen, M. D.; Zintner, S. M.; Small, J. C.; Bolden, C. T.; Fantegrossi, W. E.; Margaritis, P.; Owens, S. M.; Peterson, E. C.

10.1101/687129 — pharmacology and toxicology — Posted on 2019-06-29

51 White matter hyperintensities are common in midlife and already associated with cognitive decline

d'Arbeloff, T.; Elliott, M. L.; Knodt, A. R.; Melzer, T. R.; Keenan, R.; Ireland, D.; Ramrakha, S.; Poiulton, R.; Anderson, T.; Caspi, A.; Moffitt, T. E.; Hariri, A. R.

10.1101/687111 — neuroscience — Posted on 2019-06-29

52 Dual-plane 3-photon microscopy with remote focusing

Takasaki, K. T.; Tsyboulski, D.; Waters, J.

10.1101/687202 — neuroscience — Posted on 2019-06-29

53 Clinical utility of brain age prediction in stroke patients: A longitudinal study

Richard, G.; Kolskaar, K. K.; Ulrichsen, K. M.; Kaufmann, T.; Alnaes, D.; Sanders, A.-M.; Dorum, E. S.; Monereo Sanchez, J.; Petersen, A.; Ihle-Hansen, H.; Nordvik, J. E.; Westlye, L. T.

10.1101/687079 — neuroscience — Posted on 2019-06-29

54 Canonical brain computations account for perceived sound source location

Lestang, J.-H.; Goodman, D. F. M.

10.1101/687178 — neuroscience — Posted on 2019-06-29

55 Phylogenetic shifts in gene body methylation correlate with gene expression and reflect trait conservation

Seymour, D. K.; Gaut, B. S.

10.1101/687186 — evolutionary biology — Posted on 2019-06-29

56 Theory of active chromatin remodeling

Jiang, Z.; Zhang, B.

10.1101/687145 — biophysics — Posted on 2019-06-29

57 Mononuclear phagocytes drive Mertk-dependent T cell regulation at autoimmune and tumor sites

Lindsay, R. S.; Dew, K. E.; Rodriguez, E.; Whitesell, J. C.; Tracy, D.; Sandor, A. M.; Yannacone, S. F.; Jacobelli, J.; Friedman, R. S.

10.1101/687061 — immunology — Posted on 2019-06-29

58 CHD4-NURD controls spermatogonia survival and differentiation

de Castro, R. O.; Goitea, V.; Previato, L.; Carbajal, A.; Griffin, C.; Pezza, R.

10.1101/687137 — developmental biology — Posted on 2019-06-29

59 Analysis of DNM3 and VAMP4 as genetic modifiers of LRRK2 Parkinsons disease

Brown, E. E.; Blauwendraat, C.; Trinh, J.; Rizig, M.; Nalls, M.; Leveille, E.; Ruskey, J.; Jonvik, H.; Tan, M.; Bandres-Ciga, S.; Hassin-Baer, S.; Brockmann, K.; Hardy, J.; Singleton, A.; Alcalay, R.; Gasser, T.; Grosset, D.; Williams, N.; Pittman, A.; Gan-Or, Z.; Fernandez-Santiago, R.; Brice, A.; Lesage, S.; Farrer, M.; Wood, N.; Morris, H. R.

10.1101/686550 — genetics — Posted on 2019-06-28

60 In vitro prototyping and rapid optimization of biosynthetic enzymes for cellular design

Karim, A. S.; Dudley, Q. M.; Juminaga, A.; Yuan, Y.; Crowe, S. A.; Heggestad, J. T.; Abdalla, T.; Grubbe, W.; Rasor, B.; Coar, D.; Torculas, M.; Krein, M.; Liew, F.; Quattlebaum, A.; Jensen, R. O.; Stuart, J.; Simpson, S. D.; Köpke, M.; Jewett, M. C.

10.1101/685768 — synthetic biology — Posted on 2019-06-28

61 Inhibition of neutral sphingomyelinase-2 facilitates remyelination

Haughey, N. J.; Agarwal, A.; Smith, M.; Khuder, S.; Baxi, E.; Thomas, A.; Rojas, C.; Moniruzzman, M.; Slusher, B. S.; Burgles, D.; Calabresi, P.; Yoo, S. W.

10.1101/686287 — molecular biology — Posted on 2019-06-28

62 Basicity of N5 in semiquinone enhances the rate of respiratory electron outflow in Shewanella oneidensis MR-1

Tokunou, Y.; Saito, K.; Hasegawa, R.; Nealson, K. H.; Hashimoto, K.; Ishikita, H.; okamoto, a.

10.1101/686493 — biochemistry — Posted on 2019-06-28

63 Small molecule inhibition of PIKFYVE kinase rescues gain- and loss-of-function C9ORF72 ALS/FTD disease processes in vivo

Staats, K. A.; Seah, C.; Sahimi, A.; Wang, Y.; Koutsodendris, N.; Lin, S.; Kim, D.; Chang, W.-H.; Gray, K.; Shi, Y.; Li, Y.; Chateau, M.; Vangoor, V.; Senthilkumar, K.; Pasterkamp, J.; Cannon, P.; Zlokovic, B.; Ichida, J.

10.1101/685800 — neuroscience — Posted on 2019-06-28

64 The origin of the Gravettians: genomic evidence from a 36,000-year-old Eastern European

Bennett, E. A.; Prat, S.; Pean, S.; Crepin, L.; Yanevich, A.; Puaud, S.; Grange, T.; Geigl, E.-M.

10.1101/685404 — genetics — Posted on 2019-06-28

65 Striking differences in virulence, transmission, and sporocyst growth dynamics between two schistosome populations

Le Clec'h, W.; Diaz, R.; Chevalier, F. D.; McDew-White, M.; Anderson, T. J. C.

10.1101/685958 — evolutionary biology — Posted on 2019-06-28

66 Single Photon, Time-Gated, Phasor-based Fluorescence Lifetime Imaging Through Highly Scattering Medium

Ankri, R.; Basu, A.; Ulku, A. C.; Bruschini, C.; Charbon, E.; Weiss, S.; Michalet, X.

10.1101/686998 — bioengineering — Posted on 2019-06-28

67 Proteomic studies of the Arabidopsis TRAPP complexes reveal conserved organization and a novel plant-specific component with a role in plant development

Garcia, V. J.; xu, s.; Ravikumar, R.; Wang, W.; Elliott, L.; Fesenko, M.; Altmann, M.; Falter-Braun, P.; Moore, I.; Assaad, F. F.; Wang, Z.-Y.

10.1101/684258 — plant biology — Posted on 2019-06-28

68 Doublesex mediates the development of sex-specific pheromone organs in Bicyclus butterflies via multiple mechanisms

Prakash, A.; Monteiro, A.

10.1101/686477 — evolutionary biology — Posted on 2019-06-28

69 Sexual selection does not increase the rate of compensatory adaptation to a mutation influencing a secondary sexual trait in Drosophila melanogaster

Chandler, C. H.; Mammel, A.; Dworkin, I.

10.1101/686741 — evolutionary biology — Posted on 2019-06-28

70 Unsupervised decoding of single-trial EEG reveals unique states of functional brain connectivity that drive rapid speech categorization decisions

Al-Fahad, R.; Yeasin, M.; M Bidelman, G.

10.1101/686048 — neuroscience — Posted on 2019-06-28

71 α2δ-2 protein controls structure and function at the cerebellar climbing fiber synapse

Beeson, K. A.; Beeson, R.; Westbrook, G. L.; Schnell, E.

10.1101/685818 — neuroscience — Posted on 2019-06-28

72 Armeniaspirols inhibit the ATP-dependent proteases ClpYQ and ClpXP in Gram-positive bacteria, dysregulating the divisome

Labana, P.; Dornan, M. H.; Lafreniere, M.; Czarny, T. L.; Brown, E. D.; Pezacki, J. P.; Boddy, C.

10.1101/685669 — microbiology — Posted on 2019-06-28

73 Exposure to environmental level pesticides stimulates and diversifies evolution in Escherichia coli towards greater antibiotic resistance

Xing, Y.; Wu, S.; Men, Y.

10.1101/665273 — microbiology — Posted on 2019-06-28

74 The whale shark genome reveals patterns of vertebrate gene family evolution

Tan, M.; Redmond, A.; Dooley, H.; Nozu, R.; Sato, K.; Kuraku, S.; Koren, S.; Phillippy, A.; Dove, A.; Read, T.

10.1101/685743 — genomics — Posted on 2019-06-28

75 Draft genome assemblies using sequencing reads from Oxford Nanopore Technology and Illumina platforms for four species of North American killifish from the Fundulus genus

Johnson, L. K.; Sahasrabudhe, R.; Gill, T.; Roach, J. L.; Froenicke, L.; Brown, C. T.; Whitehead, A.

10.1101/686246 — genomics — Posted on 2019-06-28

76 QuantTB - A method to classify mixed Mycobacterium tuberculosis infections within whole genome sequencing data

Anyansi, C.; Keo, A.; Walker, B.; Straub, T. J.; Manson, A. L.; Earl, A. M.; Abeel, T.

10.1101/676296 — genomics — Posted on 2019-06-28

77 Evolutionary implementation of Bayesian computations

Czegel, D.; Giaffar, H.; Zachar, I.; Szathmary, E.

10.1101/685842 — evolutionary biology — Posted on 2019-06-28

78 Depth and location influence prokaryotic and eukaryotic microbial community structure in New Zealand fjords

Tobias-Hunefeldt, S. P.; Wing, S. R.; Espinel-Velasco, N.; Baltar, F.; Morales, S. E.

10.1101/680694 — ecology — Posted on 2019-06-28

79 Evaluation of deep-learning-based lncRNA identification tools

Yang, C.; Zhou, M.; Xie, H.; Zhu, H.

10.1101/683425 — bioinformatics — Posted on 2019-06-28

80 Endless Conflicts: Detecting Molecular Arms Races in Mammalian Genomes

Cooper, J. C.; Leonard, C. J.; Pedersen, B. S.; Carey, C. M.; Quinlan, A. R.; Elde, N. C.; Phadnis, N.

10.1101/685321 — evolutionary biology — Posted on 2019-06-28

81 What Determine the Distribution and Richness of Wild Spices in the Sudano-Guinean zone of Benin, West Africa?

Kafoutchoni, K. M.; Idohou, R.; Salako, K. V.; Agbangla, C.; Assogbadjo, A. E.

10.1101/680660 — ecology — Posted on 2019-06-28

82 Enabling Semantic Queries Across Federated Bioinformatics Databases

Sima, A.; Mendes de Farias, T.; Zbinden, E.; Anisimova, M.; Gil, M.; Stockinger, H.; Stockinger, K.; Robinson-Rechavi, M.; Dessimoz, C.

10.1101/686600 — bioinformatics — Posted on 2019-06-28

83 Trivalent cocktail of de novo designed immunogens enables the robust induction and focusing of functional antibodies in vivo

Sesterhenn, F.; Yang, C.; Cramer, J.; Bonet, J.; Wen, X.; Abriata, L.; Kucharska, I.; Chiang, C.-I.; Wang, Y.; Castoro, G.; Vollers, S.; Galloux, M.; Charles-Adrien, R.; Rosset, S.; Corthesy, P.; Georgeon, S.; Villard, M.; Descamps, D.; Rameix-Welti, M.-A.; Mas, V.; Ervin, S.; Eleouet, J.-f.; Riffault, S.; Bates, J.; Julien, J.-P.; Li, Y.; Jardetzky, T. S.; Krey, T.; Correia, B.

10.1101/685867 — bioengineering — Posted on 2019-06-28

84 Automated characterization of noise distributions in diffusion MRI data

St-Jean, S.; De Luca, A.; Tax, C. M. W.; Viergever, M. A.; Leemans, A.

10.1101/686436 — neuroscience — Posted on 2019-06-28

85 On-scalp MEG SQUIDs are sensitive to early somatosensory activity unseen by conventional MEG

Andersen, L. M.; Pfeiffer, C.; Ruffieux, S.; Riaz, B.; Winkler, D.; Schneiderman, J. F.; Lundqvist, D.

10.1101/686329 — neuroscience — Posted on 2019-06-28

86 Loci specific epigenetic drug sensitivity

Zhang, T.; Pilko, A.; Wollman, R.

10.1101/686139 — genomics — Posted on 2019-06-28

87 PDXGEM: Patient-Derived Tumor Xenograft based Gene Expression Model for Predicting Clinical Response to Anticancer Therapy in Cancer Patients

Kim, Y.; Kim, D.; Cao, B.; Carvajal, R.; Kim, M.

10.1101/686667 — bioinformatics — Posted on 2019-06-28

88 Non-invasive prenatal testing by low coverage genomic sequencing: Detection limits of screened chromosomal microdeletions

Kucharik, M.; Gnip, A.; Hyblova, M.; Budis, J.; Strieskova, L.; Harsanyova, M.; Duris, F.; Radvanszky, J.; Minarik, G.; Szemes, T.

10.1101/686345 — bioinformatics — Posted on 2019-06-28

89 IPCO: Inference of Pathways from Co-variance analysis

Das, M.; Ghosh, T. S.; Jeffery, I. B.

10.1101/686923 — bioinformatics — Posted on 2019-06-28

90 Microstructural Abnormalities of Substantia Nigra in Parkinson’s disease: A Neuromelanin Sensitive MRI Atlas Based Study

Safai, A.; Prasad, S.; Saini, J.; Pal, P. K.; Ingalhalikar, M.

10.1101/686154 — neuroscience — Posted on 2019-06-28

91 Molecular and cellular correlates of human nerve regeneration: ADCYAP1 encoding PACAP enhances sensory neuron outgrowth

Schmid, A.; Baskozos, G.; Windsor, K.; Karlsson, P.; Sandy-Hindmarch, O.; Weir, G. A.; McDermott, L. A.; Clark, A. J.; Burchall, J.; Wiberg, A.; Furniss, D.; Bennett, D. L.

10.1101/686618 — neuroscience — Posted on 2019-06-28

92 Enlarging the Scope of Randomization and Permutation Tests in Neuroimaging and Neuroscience

Maris, E.

10.1101/685560 — neuroscience — Posted on 2019-06-28

93 H3K27me3-rich genomic regions can function as silencers to repress gene expression via chromatin interactions

Cai, Y.; Zhang, Y.; Loh, Y. P.; Tng, J. Q.; Lim, M. C.; Cao, Z.; Raju, A.; Li, S.; Manikandan, L.; Tergaonkar, V.; Tucker-Kellogg, G.; Fullwood, M. J.

10.1101/684712 — genomics — Posted on 2019-06-28

94 Hippocampal transcriptome analysis following maternal separation implicates altered RNA processing in a mouse model of fetal alcohol spectrum disorder

Alberry, B. L.; Castellani, C. A.; Singh, S. M.

10.1101/685586 — genomics — Posted on 2019-06-28

95 Diverse cell junctions with unique molecular composition in tissues of a sponge (Porifera)

Mitchell, J.; Nichols, S. A.

10.1101/685875 — evolutionary biology — Posted on 2019-06-28

96 Changes in social cohesion in a long-lived species under a perturbation regime

Genovart, M.; Gimenez, O.; Bertolero, A.; Choquet, R.; Oro, D.; Pradel, R.

10.1101/686451 — ecology — Posted on 2019-06-28

97 Ecological network inferred from field data elucidates invasion of a freshwater ecosystem by the exotic silver carp

Liao, C.; Xavier, J.; Zhu, Z.

10.1101/686402 — ecology — Posted on 2019-06-28

98 Distinct Basket Nucleoporins roles in Nuclear Pore Function and Gene Expression: Tpr is an integral component of the TREX-2 mRNA export pathway

Aksenova, V.; Lee, H. N.; Smith, A.; Chen, S.; Bhat, P.; Iben, J.; Echeverria, C.; Fontoura, B.; Arnaoutov, A.; Dasso, M.

10.1101/685263 — cell biology — Posted on 2019-06-28

99 Quantifying phenotypic variability and fitness in finite microbial populations

Levien, E.; Kondev, J.; Amir, A.

10.1101/680066 — systems biology — Posted on 2019-06-28

100 Functional clusters of neurons in layer 6 of macaque V1

HAWKEN, M. J.; Shapley, R. M.; Disney, A. A.; Garcia-Marin, V.; Henrie, J. A.; Henry, C. A.; Johnson, E. M.; Joshi, S.; Kelly, J. G.; Ringach, D. L.; Xing, D.

10.1101/685990 — neuroscience — Posted on 2019-06-28

101 Transcranial magnetic stimulation during British Sign Language production reveals monitoring of discrete linguistic units in left superior parietal lobule

Vinson, D.; Fox, N.; Devlin, J.; Emmorey, K.; Vigliocco, G.

10.1101/679340 — neuroscience — Posted on 2019-06-28

102 Molecular estimation of neurodegeneration pseudotime in older brains

Mukherjee, S.; Preuss, C.; Jayadev, S.; Garden, G. A.; Greenwood, A. K.; Sieberts, S. K.; De Jager, P. L.; Ertekin-Taner, N.; Carter, G. W.; Mangravite, L. M.; Logsdon, B.

10.1101/686824 — neuroscience — Posted on 2019-06-28

103 Experience shapes activity dynamics and stimulus coding of VIP inhibitory and excitatory cells

Garrett, M. E.; Manavi, S.; Roll, K.; Ollerenshaw, D. R.; Groblewski, P. A.; Kiggins, J.; Jia, X.; Casal, L.; Mace, K.; Williford, A.; Leon, A.; Mihalas, S.; Olsen, S. R.

10.1101/686063 — neuroscience — Posted on 2019-06-28

104 Single-particle measurements of filamentous influenza virions reveal damage induced by freezing

Hirst, J. C.; Hutchinson, E.

10.1101/686642 — microbiology — Posted on 2019-06-28

105 Genetic and functional diversification of chemosensory pathway receptors in filarial nematode parasites

Wheeler, N. J.; Heimark, Z. W.; Airs, P. M.; Mann, A.; Bartholomay, L. C.; Zamanian, M.

10.1101/683060 — microbiology — Posted on 2019-06-28

106 Streptolysin production and activity is central to in vivo pathotype and disease outcome in GAS infections

Clarke, J.; Baltazar, M.; Alsahag, M.; Panagiotou, S.; Pouget, M.; Paxton, W. A.; Pollakis, G.; Everett, D.; French, N.; Kadioglu, A.

10.1101/686303 — microbiology — Posted on 2019-06-28

107 Regulation of Numb during planar cell polarity establishment in the Drosophila eye

Domingos, P. M.; Jenny, A.; del Alamo, D.; Mlodzik, M.; Steller, H.; Mollereau, B.

10.1101/686840 — developmental biology — Posted on 2019-06-28

108 Polymer-like model to study the dynamics of dynamin filaments on deformable membrane tubes

Noel, J. K.; Noe, F.; Daumke, O.; Mikhailov, A.

10.1101/686873 — biophysics — Posted on 2019-06-28

109 The dark side of amyloid aggregation: Exploring the productive and non-productive pathways with multi-scale modeling

Jia, Z.; Schmit, J.; Chen, J.

10.1101/687020 — biophysics — Posted on 2019-06-28

110 Functional ultrasound speckle decorrelation-based velocimetry of the brain

Tang, J.; Postnov, D. D.; Kilic, K.; Erdener, S. E.; Lee, B.; Szabo, T. L.; Boas, D. A.

10.1101/686774 — bioengineering — Posted on 2019-06-28

111 Maternal glucocorticoids do not predict reproductive investment nor breeding success in a free-ranging bird.

Fischer, D.; Marrotte, R. R.; Chin, E. H.; Coulson, S.; Burness, G.

10.1101/685891 — zoology — Posted on 2019-06-28

112 Monocarboxylate transporter 1 in Schwann cells is critical for maintenance of sensory nerve myelination during aging

Jha, M. K.; Lee, Y.; Russell, K.; Yang, F.; Dastgheyb, R.; Deme, P.; Ament, X. H.; Chen, W.; Liu, Y.; Guan, Y.; Polydefkis, M. J.; Hoke, A.; Haughey, N. J.; Rothstein, J. D.; Morrison, B. M.

10.1101/686832 — neuroscience — Posted on 2019-06-28

113 Hash-based core genome multi-locus sequencing typing for Clostridium difficile

Eyre, D. W.; Peto, T. E.; Crook, D. W.; Walker, A. S.; Wilcox, M. H.

10.1101/686212 — microbiology — Posted on 2019-06-28

114 Neonatal-derived IL-17 producing dermal gd T cells are required to prevent spontaneous atopic dermatitis

Spidale, N.; Malhotra, N.; Sylvia, K.; Frascoli, M.; Miu, B.; Standinski, B. D.; Huseby, E. S.; Kang, J.

10.1101/686576 — immunology — Posted on 2019-06-28

115 Mutational signatures are jointly shaped by DNA damage and repair

Volkova, N. V.; Meier, B.; Gonzalez Huici, V.; Bertolini, S.; Gonzalez Rosado, S.; Abascal, F.; Martincorena, I.; Campbell, P. J.; Gartner, A.; Gerstung, M.

10.1101/686295 — genomics — Posted on 2019-06-28

116 The intracellular symbiont Wolbachia enhances recombination in a dose-dependent manner

Bryant, K. N.; Newton, I. G.

10.1101/686444 — genetics — Posted on 2019-06-28

117 Identification of type 2 diabetes loci in 433,540 East Asian individuals

Spracklen, C. N.; Horikoshi, M.; Kim, Y. J.; Lin, K.; Bragg, F.; Moon, S.; Suzuki, K.; Tam, C.; Tabara, Y.; Kwak, S.-H.; Takeuchi, F.; Long, J.; Lim, V.; Chai, J.-F.; Chen, C.-H.; Nakatochi, M.; Yao, J.; Choi, H. S.; Iyengar, A. K.; Perrin, H. J.; Brotman, S. M.; van de Bunt, M.; Gloyn, A. L.; Below, J. L.; Boehnke, M.; Bowden, D. W.; Chambers, J. C.; Mahajan, A.; McCarthy, M. I.; Ng, M. C.; Petty, L. E.; Zhang, W.; Morris, A. P.; Adair, L. S.; Bian, Z.; Chan, J.; Chang, L.-C.; Chee, M.-L.; Chen, Y.-D. I.; Chen, Y.-T.; Chen, Z.; Chuang, L.-M.; Du, S.; Gordon-Larsen, P.; Gross, M.; Guo, X.; Guo

10.1101/685172 — genetics — Posted on 2019-06-28

118 Direct evidence for transport of RNA from the mouse brain to the germline and offspring

O'Brien, E. A.; Ensbey, K. S.; Day, B. W.; Baldock, P. A.; Barry, G.

10.1101/686634 — evolutionary biology — Posted on 2019-06-28

119 Old Meets New: Combining Herbarium Databases with Genetic Methods to Evaluate the Invasion Status of Baby’s Breath (Gypsophila paniculata) in North America

Lamar, S. K.; Partridge, C. G.

10.1101/686691 — evolutionary biology — Posted on 2019-06-28

120 Hotspot prioritizations show sensitivity to data type

Norman, K. E. A.; White, E. P.

10.1101/685735 — ecology — Posted on 2019-06-28

121 A \"feet digging\" swash zone sampling method for the sandy beach bivalve Donax deltoides (Bivalvia: Donacidae)

Totterman, S.

10.1101/686196 — ecology — Posted on 2019-06-28

122 Improving ATAC-seq Data Analysis with AIAP, a Quality Control and Integrative Analysis Package

Liu, S.; Li, D.; Lyu, C.; Gontarz, P.; Miao, B.; Madden, P.; Wang, T.; Zhang, B.

10.1101/686808 — bioinformatics — Posted on 2019-06-28

123 Feature extraction approach in single-cell gene expression profiling for cell-type marker identification

Adossa, N. A.; Schauser, L.; Gregersen, V. G.; Elo, L. L.

10.1101/686659 — bioinformatics — Posted on 2019-06-28

124 Stress- and pathway-specific impacts of impaired jasmonoyl-isoleucine (JA-Ile) catabolism on defense signaling and biotic stress resistance in Arabidopsis

Marquis, V.; Smirnova, E.; Poirier, L.; Zumsteg, J.; Schweizer, F.; Reymond, P.; Heitz, T.

10.1101/686709 — plant biology — Posted on 2019-06-28

125 Molecular tuning of the axonal mitochondrial Ca2+ uniporter ensures metabolic flexability of neurotransmission

Ashrafi, G.; de Juan-Sanz, J.; Farrell, R.; Ryan, T. A.

10.1101/685859 — neuroscience — Posted on 2019-06-28

126 Dynamics and variability in regenerative potential of neuronal subtypes in the Nematostella nerve net

Havrilak, J. A.; Al-Shaer, L.; Akinci, N.; Amiel, A.; Röttinger, E.; Layden, M. J.

10.1101/685917 — neuroscience — Posted on 2019-06-28

127 Quantitative Personality Predictions from a Brief EEG Recording

Li, W.; Wu, C.; Hu, X.; Chen, J.; Fu, S.; Wang, F.; Zhang, D.

10.1101/686907 — neuroscience — Posted on 2019-06-28

128 An impact of HP1γ on the fidelity of pre-mRNA splicing arises from its ability to bind RNA via intronic repeated sequences.

Rachez, C.; Legendre, R.; Costallat, M.; Varet, H.; Yi, J.; Kornobis, E.; Proux, C.; Muchardt, C.

10.1101/686790 — molecular biology — Posted on 2019-06-28

129 Functional conservation of lncRNA JPX despite sequence and structural divergence

Karner, H. M.; Webb, C.-H.; Carmona, S.; Liu, Y.; Lin, B.; Erhard, M.; Chan, D.; Baldi, P.; Spitale, R. C.; Sun, S.

10.1101/686113 — molecular biology — Posted on 2019-06-28

130 Engineering oleaginous yeast Yarrowia lipolytica for violacein production: extraction, quantitative measurement and culture optimization

Tong, Y.; Zhou, J.; Zhang, L.; Xu, P.

10.1101/687012 — microbiology — Posted on 2019-06-28

131 Transposable element over-accumulation in autopolyploids results from relaxed purifying selection and provides variants for rapid local adaptation

BADUEL, P.; Quadrana, L.; Hunter, B.; Bomblies, K.; Colot, V.

10.1101/686584 — genomics — Posted on 2019-06-28

132 Relation extraction between bacteria and biotopes from biomedical texts with attention mechanisms and domain-specific contextual representations

Jettakul, A.; Wichadakul, D.; Vateekul, P.

10.1101/686501 — bioinformatics — Posted on 2019-06-28

133 Deep in the Bowel: Highly Interpretable Neural Encoder-Decoder Networks Predict Gut Metabolites from Gut Microbiome

Le, V.; Quinn, T. P.; Tran, T.; Venkatesh, S.

10.1101/686394 — bioinformatics — Posted on 2019-06-28

134 Diagnostic optical sequencing

Korshoj, L. E.; Nagpal, P.

10.1101/685792 — bioengineering — Posted on 2019-06-28

135 Effects of Night Temperature and Water Stress on Photosynthetic Gas Exchange of Potentilla gracilis (Rosaceae)

Nepal, M. P.; Berg, V. S.

10.1101/685727 — plant biology — Posted on 2019-06-28

136 Cerebral contribution to the execution, but not recalibration, of motor commands in a novel walking environment.

de Kam, D.; Iturralde, P. A.; Torres-Oviedo, G.

10.1101/686980 — neuroscience — Posted on 2019-06-28

137 Extramacrochaete promotes branch and bouton number via the sequestration of Daughterless in the cytoplasm of neurons.

Waddell, E. A.; Viveiros, J. M.; Robinson, E. L.; Sharoni, M. A.; Latcheva, N. K.; Marenda, D. R.

10.1101/686014 — neuroscience — Posted on 2019-06-28

138 A Drug Combination Approach Targeting Both Growing Bacteria and Dormant Persisters Eradicate Persistent Staphylococcus aureus Biofilm Infection

Yee, R.; Yuan, Y.; Tarff, A.; Brayton, C.; Gour, N.; Feng, J.; Shi, W.; Zhang, Y.

10.1101/686097 — microbiology — Posted on 2019-06-28

139 IBD analysis of Australian amyotrophic lateral sclerosis SOD1-mutation carriers identifies five founder events and links sporadic cases to existing ALS families

Henden, L.; Twine, N. A.; Szul, P.; McCann, E. P.; Nicholson, G. A.; Rowe, D. B.; Kiernan, M. C.; Bauer, D. C.; Blair, I. P.; Williams, K. L.

10.1101/685925 — genetics — Posted on 2019-06-28

140 Survival of prey growing through gape-limited and apex predators

Anderson, J. J.

10.1101/686964 — ecology — Posted on 2019-06-28

141 Ran GTPase regulates non-centrosomal microtubule nucleation and is transported by actin waves towards the neurite tip.

Huang, Y.-A.; Hsu, C.-H.; Chiu, H.-C.; Ho, C. T.; Lo, W.-L.; Hwang, E.

10.1101/684720 — cell biology — Posted on 2019-06-28

142 Protein interaction energy landscapes are shaped by functional and also non-functional partners

Schweke, H.; Mucchielli, M.-H.; Sacquin-Mora, S.; Bei, W.; Lopes, A.

10.1101/298174 — bioinformatics — Posted on 2019-06-28

143 Mouse retinal cell behaviour in space and time using light sheet fluorescence microscopy

Prahst, C.; Ashrafzadeh, P.; Harrington, K.; Venkatraman, L.; Richards, M.; Russo, A. M.; Cho, K.-S.; Chang, K.; Mead, T.; Chen, D. F.; Richardson, D.; Claesson-Welsh, L.; Franco, C.; Bentley, K.

10.1101/686626 — developmental biology — Posted on 2019-06-28

144 PACSIN2-dependent apical endocytosis regulates the morphology of epithelial microvilli

Postema, M. M.; Grega-Larson, N. E.; Meenderink, L. M.; Tyska, M. J.

10.1101/686816 — cell biology — Posted on 2019-06-28

145 Senolytic activity of small molecular polyphenols from olive restores chondrocyte redifferentiation and cartilage regeneration in osteoarthritis

Varela-Eirin, M.; Varela-Vazquez, A.; Paino, C. L.; Casado-Diaz, A.; Calanas-Continente, A.; Mato, V.; Fonseca, E.; Kandouz, M.; Blanco, A.; Caeiro, J. R.; Mayan, M. D.

10.1101/686535 — cell biology — Posted on 2019-06-28

146 Accurate and efficient discretisations for stochastic models of cell migration and cell proliferation with crowding

Fadai, N. T.; Baker, R. E.; Simpson, M. J.

10.1101/686030 — biophysics — Posted on 2019-06-28

147 Expansion of apical extracellular matrix underlies the morphogenesis of a recently evolved structure

Smith, S. J.; davidson, L. A.; Rebeiz, M.

10.1101/686089 — developmental biology — Posted on 2019-06-28

148 Ensemble-level organization of human kinetochores and evidence for distinct tension and attachment sensors

Roscioli, E.; Germanova, T. E.; Smith, C. A.; Embacher, P. A.; Erent, M.; Thompson, A. I.; Burroughs, N. J.; McAinsh, A. D.

10.1101/685248 — cell biology — Posted on 2019-06-28

149 Kinesin-8B controls basal body function and flagellum formation and is key to malaria parasite transmission

Zeeshan, M.; Ferguson, D. J. P.; Abel, S.; Burrrell, A.; Rea, E.; Brady, D.; Daniel, E.; Delves, M.; Vaughan, S.; Holder, A. A.; Le Roch, K. G.; Moores, C. A.; Tewari, R.

10.1101/686568 — cell biology — Posted on 2019-06-28

150 Molecular motor organization and mobility on cargos can overcome a tradeoff between fast binding and run length

Bovyn, M.; Gross, S.; Allard, J.

10.1101/686147 — cell biology — Posted on 2019-06-28

151 Classification of human physical activity based on the raw accelerometry data via spherical coordinate transformation

Kos, M.; Bogdan, M.; Glynn, N. W.; Harezlak, J.

10.1101/686519 — biophysics — Posted on 2019-06-28

152 BMP7 functions predominantly as a heterodimer with BMP2 or BMP4 during mammalian embryogenesis

Kim, H.-S.; Neugebauer, J.; McKnite, A.; Tilak, A.; Christian, J. L.

10.1101/686758 — developmental biology — Posted on 2019-06-28

153 The SUMO Protease SENP3 Regulates Mitochondrial Autophagy Mediated by Fis1

Waters, E. L.; Wilkinson, K. A.; Carmichael, R. E.; Guo, C.

10.1101/685834 — cell biology — Posted on 2019-06-28

154 ADAMTS-1 and Syndecan-4 intersect in the regulation of cell migration and angiogenesis

Lambert, J.; Makin, K.; Johnson, R.; Akbareian, S.; Robinson, S. D.; Edwards, D. R.

10.1101/686733 — cell biology — Posted on 2019-06-28

155 Hierarchical domain model explains multifractal scaling of chromosome contact maps

Pigolotti, S.; Jensen, M. H.; Tiana, G.

10.1101/686279 — biophysics — Posted on 2019-06-28

156 Lis1 activates dynein motility by pairing it with dynactin

ElShenawy, M.; Kusakci, E.; Volz, S.; Baumbach, J.; Bullock, S. L.; Yildiz, A.

10.1101/685826 — biophysics — Posted on 2019-06-28

157 Ejaculate deterioration with male age, and its amelioration in Drosophila

Sepil, I.; Hopkins, B. R.; Dean, R.; Bath, E.; Friedman, S.; Swanson, B.; Ostridge, H. J.; Buehner, N. A.; Wolfner, M. F.; Konietzny, R.; Thezenas, M.-L.; Sandham, E.; Charles, P. D.; Fischer, R.; Steinhauer, J.; Kessler, B. M.; Wigby, S.

10.1101/624734 — evolutionary biology — Posted on 2019-06-28

158 Interspecific plant competition mediates the metabolic and ecological signature of a plant-herbivore interaction under warming and elevated CO2

Van De Velde, H.; AbdElgawad, H.; Asard, H.; Beemster, G.; Selim, S.; Nijs, I.; Bonte, D.

10.1101/420901 — ecology — Posted on 2019-06-28

159 Feedback regulation of BMP signaling by C. elegans cuticle collagens

Madaan, U.; Faure, L.; Chowdhury, A.; Ahmed, S.; Ciccarelli, E. J.; Gumienny, T. L.; Savage-Dunn, C.

10.1101/686592 — developmental biology — Posted on 2019-06-28

160 An auto-inhibitory mechanism regulates the non-enzymatic functions of a histone demethylase

Raiymbek, G.; An, S.; Khurana, N.; Gopinath, S.; Biswas, S.; Larkin, A.; Trievel, R.; Cho, U.-s.; Ragunathan, K.

10.1101/545814 — biochemistry — Posted on 2019-06-28

161 Siliplant1 (Slp1) protein precipitates silica in sorghum silica cells

Kumar, S.; Adiram-Filiba, N.; Blum, S.; Sanchez-Lopez, J. A.; Tzfadia, O.; Omid, A.; Volpin, H.; Heifetz, Y.; Goobes, G.; Elbaum, R.

10.1101/518332 — plant biology — Posted on 2019-06-28

162 CRISPR-Cas immunity repressed by a biofilm-activating pathway in Pseudomonas aeruginosa

Borges, A. L.; Castro, B.; Govindarajan, S.; Solvik, T.; Escalante, V.; Bondy-Denomy, J.

10.1101/673095 — microbiology — Posted on 2019-06-28

163 FISIK: Framework for the Inference of in Situ Interaction Kinetics from single-molecule imaging data

de Oliveira, L. R.; Jaqaman, K.

10.1101/530063 — biophysics — Posted on 2019-06-28

164 GraphDTA: prediction of drug-target binding affinity using graph convolutional networks

Nguyen, T.; Le, H.; Venkatesh, S.

10.1101/684662 — bioinformatics — Posted on 2019-06-28

165 MAP2 is hyperphosphorylated in schizophrenia, altering its function

Grubisha, M. J.; Sun, X.; MacDonald, M. L.; Garver, M.; Sun, Z.; DeGiosio, R. A.; Lewis, D. A.; Nates, N. A.; Camacho, C.; Ding, Y.; Sweet, R. A.

10.1101/683912 — neuroscience — Posted on 2019-06-28

166 Maltotriose consumption by hybrid Saccharomyces pastorianus is heterotic and results from regulatory cross-talk between parental sub-genomes

Brouwers, N.; Brickwedde, A.; Gorter de Vries, A.; van den Broek, M.; Weening, S. M.; van den Eijnden, L. F.; Diderich, J. A.; Bai, F.-Y.; Pronk, J. T.; Daran, J.-M.

10.1101/679563 — microbiology — Posted on 2019-06-28

167 Within-population genome size variation is mediated by multiple genomic elements that segregate independently during meiosis

Stelzer, C.-P.; Pichler, M.; Stadler, P.; Hatheuer, A.; Riss, S.

10.1101/623470 — evolutionary biology — Posted on 2019-06-28

168 Establishing BARA: Biological Nitrogen Fixation for Future Agriculture

Khan, M. S.; Koizumi, N.; Olds, J. L.

10.1101/684324 — microbiology — Posted on 2019-06-28

169 Classic and introgressed selective sweeps shape mimicry loci across a butterfly adaptive radiation

Moest, M.; Van Belleghem, S. M.; James, J. E.; Salazar, C.; Martin, S. H.; Barker, S. L.; Moreira, G. R. P.; Merot, C.; Joron, M.; Nadeau, N. J.; Steiner, F. M.; Jiggins, C. D.

10.1101/685685 — evolutionary biology — Posted on 2019-06-28

170 Neanderthal-Denisovan ancestors interbred with a distantly-related hominin

Rogers, A. R.; Harris, N. S.; Achenbach, A. A.

10.1101/657247 — evolutionary biology — Posted on 2019-06-28

171 Locating ligand binding sites in G-protein coupled receptors using combined information from docking and sequence conservation

Vidad, A. R.; Macaspac, S.; Ng, H. L.

10.1101/461681 — bioinformatics — Posted on 2019-06-28

172 Genotype-free demultiplexing of pooled single-cell RNA-Seq

Xu, J.; Falconer, C.; Nguyen, Q.; Crawford, J.; McKinnon, B. D.; Mortlock, S.-A.; Pebay, A.; Hewitt, A. W.; Senabouth, A.; Palpant, N.; Chiu, H. S.; Andersen, S.; Montgomery, G. W.; Powell, J.; Coin, L.

10.1101/570614 — bioinformatics — Posted on 2019-06-28

173 Ammonia inhibits energy metabolism in astrocytes in a rapid and GDH2-dependent manner

Drews, L.; Zimmermann, M.; Poss, R. E.; Brilhaus, D.; Bergmann, L.; Wiek, C.; Piekorz, R. P.; Weber, A. P. M.; Mettler-Altmann, T.; Reichert, A. S.

10.1101/683763 — biochemistry — Posted on 2019-06-28

174 Dedicated setup for the photoconversion of fluorescent dyes for functional electron microscopy.

Dobson, K. L.; Howe, C. L.; Nishimura, Y.; Marra, V.

10.1101/622639 — neuroscience — Posted on 2019-06-28

175 Loss of β-arrestin2 in D2 cells alters neuronal excitability in the nucleus accumbens and behavioral responses to psychostimulants and opioids

Porter-Stransky, K. A.; Petko, A. K.; Karne, S. L.; Liles, L. C.; Urs, N. M.; Caron, M. G.; Paladini, C. A.; Weinshenker, D.

10.1101/685719 — neuroscience — Posted on 2019-06-28

176 Genome-wide association study of suicide death and polygenic prediction of clinical antecedents

Docherty, A.; Shabalin, A. A.; Anderson, J. S.; DiBlasi, E.; Monsen, E.; Bacanu, S.; Crowell, S.; Gray, D.; Keeshin, B.; McIntosh, A.; Porteous, D.; Hayward, C.; Bakian, A.; Darlington, T.; Adkins, D. E.; Mullins, N.; Li, Q.; Coon, H.

10.1101/234674 — genetics — Posted on 2019-06-28

177 Social information drives ecological outcomes among competing species

Gil, M. A.; Baskett, M. L.; Schreiber, S.

10.1101/604595 — ecology — Posted on 2019-06-28

178 Homo- and heterodimerization of bHLH transcription factors balance stemness and bipotential differentiation

Puig-Barbe, A.; de Navascues, J.

10.1101/685347 — developmental biology — Posted on 2019-06-28

179 Nicotinamide riboside augments the human skeletal muscle NAD+ metabolome and induces transcriptomic and anti-inflammatory signatures in aged subjects: a placebo-controlled, randomized trial

Elhassan, Y. S.; Kluckova, K.; Fletcher, R.; Schmidt, M.; Garten, A.; Doig, C.; Cartwright, D.; Oakey, L.; Burley, C.; Jenkinson, N.; Wilson, M.; Lucas, S.; Akerman, I.; Seabright, A.; Lai, Y.-C.; Tennant, D.; Nightingale, P.; Wallis, G.; Manolopoulos, K.; Brenner, C.; Philp, A.; Lavery, G. G.

10.1101/680462 — clinical trials — Posted on 2019-06-28

180 An analytical theory of balanced cellular growth

Dourado, H.; Lercher, M. J.

10.1101/607374 — biophysics — Posted on 2019-06-28

181 Gut microbial dysbiosis in individuals with Sjögren’s disease

Mendez, R.; Watane, A.; Farhangi, M.; Cavuoto, K. M.; Leith, T.; Budree, S.; Galor, A.; Banerjee, S.

10.1101/645739 — physiology — Posted on 2019-06-28

182 Neuromodulatory selection of motor neuron recruitment patterns in a visuomotor behavior increases speed

Jha, U.; Thirumalai, V.

10.1101/683649 — neuroscience — Posted on 2019-06-28

183 Alertness fluctuations during task performance modulate cortical evoked responses to transcranial magnetic stimulation

Noreika, V.; Kamke, M. R.; Canales-Johnson, A.; Chennu, S.; Mattingley, J. B.; Bekinschtein, T. A.

10.1101/155754 — neuroscience — Posted on 2019-06-28

184 Functional dissociation of theta oscillations in the frontal and visual cortices and their long-range network during sustained attention

Han, H.-B.; Lee, K. E.; Choi, J. H.

10.1101/684829 — neuroscience — Posted on 2019-06-28

185 Obesity and brain topological organization differences throughout the lifespan

Ottino-Gonzalez, J.; Baggio, H. C.; Jurado, M. A.; Segura, B.; Caldu, X.; Prats-Soteras, X.; Tor, E.; Sender-Palacios, M. J.; Miro, N.; Sanchez-Garre, C.; Dadar, M.; Dagher, A.; Garcia Garcia, I.; Garolera, M.

10.1101/685081 — neuroscience — Posted on 2019-06-28

186 Reach and Grasp Altered in Pantomime String-Pulling: A Test of the Action/Perception Theory in a Bilateral Reaching Task

Singh, S.; Mandziak, A.; Barr, K.; Blackwell, A. A.; Mohajerani, M. H.; Wallace, D. G.; Whishaw, I. Q.

10.1101/679811 — neuroscience — Posted on 2019-06-28

187 CD44 alternative splicing is a sensor of intragenic DNA methylation in tumors

Batsche, E.; Mauger, O.; Kornobis, E.; Hopkins, B.; Hanmer-Lloyd, C.; Muchardt, C.

10.1101/685651 — molecular biology — Posted on 2019-06-28

188 MiR-9-5p protects from kidney fibrosis by metabolic reprogramming

Fierro-Fernandez, M.; Miguel, V.; Marquez-Exposito, L.; Nuevo-Tapioles, C.; Herrero, J. I.; Blanco-Ruiz, E.; Tituana, J.; Castillo, C.; Cannata, P.; Monsalve, M.; Ruiz-Ortega, M.; Ramos, R.; Lamas, S.

10.1101/667972 — molecular biology — Posted on 2019-06-28

189 Evidence for extensive anaerobic dechlorination and transformation of the pesticide chlordecone (C10Cl10O) in soil from Guadeloupe

Lomheim, L.; Laquitaine, L.; Rambinaising, S.; Flick, R.; Starostine, A.; Jean-Marius, C.; Gaspard, S.; Edwards, E. A.

10.1101/650200 — microbiology — Posted on 2019-06-28

190 Chromosome-scale assembly comparison of the Korean Reference Genome KOREF from PromethION and PacBio with Hi-C mapping information

Kim, H.-S.; Jeon, S.; Kim, C.; Kim, Y. K.; Cho, Y. S.; Kim, J.; Blazyte, A.; Manica, A.; Lee, S.; Bhak, J.

10.1101/674804 — genomics — Posted on 2019-06-28

191 Next-generation in situ conservation and educational outreach in Madagascar using a mobile genetics lab

Blanco, M. B.; Greene, L. K.; Williams, R. C.; Andrianandrasana, L.; Yoder, A. D.; Larsen, P. A.

10.1101/650614 — genetics — Posted on 2019-06-28

192 The genetic interaction between HIV and the antibody repertoire

Strauli, N.; Fryer, E. K.; Pham, O.; Abdel-Mohsen, M.; Facente, S. N.; Pilcher, C.; Pennings, P.; Pillai, S.; Hernandez, R. D.

10.1101/646968 — evolutionary biology — Posted on 2019-06-28

193 Identifying epigenetic biomarkers of established prognostic factors and survival in a clinical cohort of individuals with oropharyngeal cancer

Langdon, R.; Richmond, R.; Elliott, H.; Dudding, T.; Kazmi, N.; Penfold, C.; Ingarfield, K.; Ho, K.; Bretherick, A.; Haley, C.; Zeng, Y.; Walker, R. M.; Pawlita, M.; Waterboer, T.; Ring, S.; Gaunt, T.; Smith, G. D.; Suderman, M.; Thomas, S.; Ness, A.; Relton, C.

10.1101/679316 — epidemiology — Posted on 2019-06-28

194 Negligible-Cost and Weekend-Free Chemically Defined Human iPSC Culture

Kuo, H.-H.; Gao, X.; DeKeyser, J.-M.; Fetterman, K. A.; Pinheiro, E. A.; Weddle, C. J.; Orman, M. V.; Romero-Tejeda, M.; Jouni, M.; Blancard, M.; Magdy, T.; Epting, C.; George, A. L.; Burridge, P. W.

10.1101/685503 — cell biology — Posted on 2019-06-28

195 Metabolic Cost of Rapid Adaptation of Single Yeast Cells

Woronoff, G.; Nghe, P.; Baudry, J.; Boitard, L.; Braun, E.; Griffiths, A. D.; Bibette, J.

10.1101/564419 — systems biology — Posted on 2019-06-28

196 Gene regulatory network inference and analysis of multidrug-resistant Pseudomonas aeruginosa

Medeiros Filho, F.; Nascimento, A. P. B.; Trindade dos Santos, M.; Carvalho-Assef, A. P. D.; Silva, F. A. B.

10.1101/610493 — systems biology — Posted on 2019-06-28

197 Selective Activation of TASK-3-containing K+ Channels Reveals Their Therapeutic Potentials in Analgesia

Liao, P.; Qiu, Y.; Mo, Y.; Fu, J.; Song, Z.; Huang, L.; Bai, S.; Wang, Y.; Zhu, J. J.; Tian, F.; Chen, Z.; Pan, N.; Sun, E. Y.; Yang, L.; Lan, X.; Chen, Y.; Huang, D.; Sun, P.; Zhao, L.; Yang, D.; Lu, W.; Yang, T.; Xiao, J.; Li, W. G.; Gao, Z.; Shen, B.; Zhang, Q.; Liu, J.; Jiang, H.; Jiang, R.; Yang, H.

10.1101/657387 — pharmacology and toxicology — Posted on 2019-06-28

198 Controllability Governs the Balance Between Pavlovian and Instrumental Action Selection

Dorfman, H. M.; Gershman, S. J.

10.1101/596577 — neuroscience — Posted on 2019-06-28

199 Single-cell DNA and RNA sequencing reveals the dynamics of intra-tumor heterogeneity in a colorectal cancer model

Ono, H.; Arai, Y.; Furukawa, E.; Narushima, D.; Matsuura, T.; Nakamura, H.; Shiokawa, D.; Nagai, M.; Imai, T.; Mimori, K.; Okamoto, K.; Hippo, Y.; Shibata, T.; Kato, M.

10.1101/616870 — genomics — Posted on 2019-06-28

200 The genomic impact of European colonization of the Americas

Ongaro, L.; Scliar, M. O.; Flores, R.; Raveane, A.; Marnetto, D.; Sarno, S.; Gnecchi-Ruscone, G. A.; Alarcon-Riquelme, M. E.; Patin, E.; Wangkumhang, P.; Hellenthal, G.; Gonzalez-Santos, M.; King, R. J.; Kouvatsi, A.; Balanovsky, O.; Balanovska, E.; Atramentova, L.; Turdikulova, S.; Mastana, S.; Marjanovic, D.; Kovacevic, L.; Leskovac, A.; Lima-Costa, M. F.; Pereira, A. C.; Barreto, M. L.; Horta, B. L.; Mabunda, N.; May, C. A.; Moreno-Estrada, A.; Achilli, A.; Olivieri, A.; Semino, O.; Tambets, K.; Kivisild, T.; Luiselli, D.; Torroni, A.; Capelli, C.; Tarazona-Santos, E.; Metspalu, M.; Pagani,

10.1101/676437 — genomics — Posted on 2019-06-28

201 Making the most of Clumping and Thresholding for polygenic scores

Prive, F.; Vilhjalmsson, B. J.; Aschard, H.; Blum, M. G. B.

10.1101/653204 — genetics — Posted on 2019-06-28

202 Physical activity and screen time in children who survived cancer - A report from the Swiss Childhood Cancer Survivor Study

Schindera, C.; Weiss, A.; Hagenbuch, N.; Otth, M.; Diesch, T.; von der Weid, N.; Kuehni, C. E.

10.1101/680140 — epidemiology — Posted on 2019-06-28

203 Temporal and spatial limitations in global surveillance for bat filoviruses and henipaviruses

Becker, D. J.; Crowley, D. E.; Washburne, A. D.; Plowright, R. K.

10.1101/674655 — epidemiology — Posted on 2019-06-28

204 Rupture of nuclear envelope in starfish oocytes proceeds by F-actin-driven segregation of pore-dense and pore-free membranes

Wesolowska, N.; Machado, P.; Avilov, I.; Geiss, C.; Kondo, H.; Mori, M.; Schwab, Y.; Lenart, P.

10.1101/480434 — cell biology — Posted on 2019-06-28

205 Cellular contractility coordinates cytoskeletal dynamics and cell behaviour during Drosophila abdominal morphogenesis

Pulido Companys, P.; Norris, A.; Bischoff, M.

10.1101/672006 — cell biology — Posted on 2019-06-28

206 What is that molecular machine really doing? Automated exploration of alternative transporter mechanisms

George, A.; Bisignano, P.; Rosenberg, J.; Grabe, M.; Zuckerman, D. M.

10.1101/685933 — biophysics — Posted on 2019-06-28

207 Aequorea victoria’s secrets

Lambert, G. G.; Depernet, H.; Gotthard, G.; Schultz, D. T.; Navizet, l.; Lambert, T.; Bindels, D. S.; Levesque, V.; Nero Moffatt, J.; Salih, A.; Royant, A.; Shaner, N. C.

10.1101/677344 — biochemistry — Posted on 2019-06-28

208 STATegra: a comprehensive multi-omics dataset of B-cell differentiation in mouse

Gomez-Cabrero, D.; Tarazona, S.; Ferreiros-Vidal, I.; Ramirez, R. N.; Company, C.; Schmidt, A.; von Saint Paul, V.; Reijmers, T.; Marabita, F.; Rodriguez-Ubreva, J.; Garcia-Gomez, A.; Caroll, T.; Cooper, L.; Liang, Z.; Dharmalingam, G.; van der Kloet, F. v. d. K.; Harms, A. C.; Balzano-Nogueira, L.; Lagani, V.; Tsamardinos, I.; Lappe, M.; Maier, D.; Westerhuis, J. A.; Thomas, T.; Imhof, A.; Ballestar, E.; Mortazavi, A.; Merkenschlager, M.; Tenger, J.; Conesa, A.

10.1101/587477 — bioinformatics — Posted on 2019-06-28

209 Voice patterns in schizophrenia: A systematic review and Bayesian meta-analysis

Parola, A.; Simonsen, A.; Bliksted, V.; Fusaroli, R.

10.1101/583815 — bioinformatics — Posted on 2019-06-28

210 Collagen Density Modulates the Immunosuppressive Functions of Tumor-Associated Macrophages

Larsen, A. M. H.; Kuczek, D. E.; Kalvisa, A.; Siersbaek, M.; Thorseth, M.-L.; Johansen, A. Z.; Carretta, M.; Groentved, L.; Vang, O.; Madsen, D. H.

10.1101/513986 — immunology — Posted on 2019-06-28

211 Antibiotic production in Streptomyces is organized by a division of labour through terminal genomic differentiation

Zhang, Z.; Du, C.; de Barsy, F.; Liem, M.; Liakopoulos, A.; van Wezel, G.; Choi, Y. H.; Claessen, D.; Rozen, D.

10.1101/560136 — evolutionary biology — Posted on 2019-06-28

212 The association of plasma lipids with white blood cell counts: Results from the Multi-Ethnic Study of Atherosclerosis

Lai, Y. C.; Woollard, K.; McClelland, R.; Allison, M.; Rye, K.-A.; Ong, K. L.; Cochran, B. J.

10.1101/488023 — epidemiology — Posted on 2019-06-28

213 TAF-ChIP: An ultra-low input approach for genome wide chromatin immunoprecipitation assay

Akhtar, J.; More, P.; Albrecht, S.; Marini, F.; Kulkarni, A.; Kaiser, W.; Wojnowski, L.; Fontaine, J.-F.; Andrade-Navarro, M. A.; Silies, M.; Berger, C.

10.1101/299727 — genomics — Posted on 2019-06-28

214 Evolution of mating types in finite populations: the precarious advantage of being rare

Czuppon, P.; Rogers, D. W.

10.1101/400598 — evolutionary biology — Posted on 2019-06-28

215 MESSAR: Automated recommendation of metabolite substructures from tandem mass spectra

Liu, Y.; Mrzic, A.; Meysman, P.; De Vijlder, T.; Romijn, E. P.; Valkenborg, D.; Bittremieux, W.; Laukens, K.

10.1101/134189 — bioinformatics — Posted on 2019-06-28

216 Fast Klebsiella pneumoniae typing for outbreak reconstruction: an highly discriminatory HRM protocol on wzi capsular gene developed using EasyPrimer tool

Perini, M.; Piazza, A.; Panelli, S.; Di Carlo, D.; Corbella, M.; Gona, F.; Vailati, F.; Marone, P.; Cirillo, D. M.; Farina, C.; Zuccotti, G. V.; Comandatore, F.

10.1101/679001 — epidemiology — Posted on 2019-06-28

217 Negligible-Cost and Weekend-Free Chemically Defined Human iPSC Culture

Kuo, H.-H.; Gao, X.; DeKeyser, J.-M.; Fetterman, K. A.; Pinheiro, E. A.; Weddle, C. J.; Orman, M. V.; Romero-Tejeda, M.; Jouni, M.; Blancard, M.; Magdy, T.; Epting, C.; Geroge, A. L.; Burrdige, P. W.

10.1101/685503 — cell biology — Posted on 2019-06-28

218 ω-imidazolyl-alkyl derivatives as new preclinical drug candidates for NASH therapy

Diesinger, T.; Lautwein, A.; Buko, V.; Belonovskaya, E.; Lukivskaya, O.; Naruta, E.; Kirko, S.; Andreev, V.; Dvorsky, R.; Buckert, D.; Sebastian, B.; Renz, C.; Müller-Enoch, D.; Wirth, T.; Haehner, T.

10.1101/685115 — pharmacology and toxicology — Posted on 2019-06-28

219 Inhibition of IRF4 in dendritic cells by PRR-independent and -dependent signals inhibit Th2 and promote Th17 responses

Lee, J.; Zhang, J.; Chung, Y.-J.; Kim, J. H.; Kook, C. M.; Gonzalez-Navajas, J. M.; Herdman, D. S.; Nürnberg, B.; Insel, P.; Corr, M.; Tao, A.; Yasuda, K.; Rifkin, I. R.; Broide, D. H.; Sciammas, R.; Webster, N. J. G.; Raz, E.

10.1101/685008 — immunology — Posted on 2019-06-28

220 Brain functional connectivity dynamics in the aftermaths of affective and cognitive events.

Gaviria, J.; Rey, G.; Bolton, T.; Delgado, J.; Van De Ville, D.; Vuilleumier, P.

10.1101/685396 — neuroscience — Posted on 2019-06-27

221 funMotifs: Tissue-specific transcription factor motifs

Umer, H. M.; Smolinska-Garbulowska, K.; Marzouka, N.-a.-d.; Khaliq, Z.; Wadelius, C.; Komorowski, J.

10.1101/683722 — genomics — Posted on 2019-06-27

222 Large-scale dissection suggests that ultraconserved elements are dispensable for mouse embryonic stem cell survival and fitness

Schneider, A.; Hiller, M.; Buchholz, F.

10.1101/683565 — genetics — Posted on 2019-06-27

223 SAPdb: A database of nanostructures formed by self-assembly of short peptides

Mathur, D.; Kaur, H.; Raghava, G. P. S.

10.1101/685149 — bioinformatics — Posted on 2019-06-27

224 Compounds without borders: a novel paradigm for quantifying complex odors and responses to scent-pollution in bumblebees

Sprayberry, J. D.

10.1101/684134 — animal behavior and cognition — Posted on 2019-06-27

225 New genetic sources for orange color in cucumber (Cucumis sativus L.) fruit flesh

Waters, B. M.; Kim, H.; Amundsen, K.

10.1101/685289 — plant biology — Posted on 2019-06-27

226 Neuromedin U signaling regulates memory retrieval of learned salt avoidance in a C. elegans gustatory circuit

Watteyne, J.; Van der Auwera, P.; Peymen, K.; Borghgraef, C.; Vandewyer, E.; Rutten, I.; Lammertyn, J.; Jelier, R.; Schoofs, L.; Beets, I.

10.1101/683888 — neuroscience — Posted on 2019-06-27

227 BSU1 family phosphatases mediate Flagellin-FLS2 signaling through a specific phosphocode.

Park, C. H.; Youn, J.-H.; Xu, S.-L.; Kim, J.-G.; Bi, Y.; Xu, N.; Mudgett, M. B.; Kim, S.-K.; Kim, T.-W.; Wang, Z.-Y.

10.1101/685610 — plant biology — Posted on 2019-06-27

228 Alpha/Beta Hydrolase Domain-Containing Protein 2 regulates the rhythm of follicular maturation and estrous stages of the female reproductive cycle

Bjoerkgren, I.; Chung, D. H.; Mendoza, S.; Gabelev-Khasin, L.; Modzelewski, A.; He, L.; Lishko, P. V.

10.1101/684951 — physiology — Posted on 2019-06-27

229 Apolipoprotein M-bound sphingosine-1-phosphate regulates blood-brain barrier paracellular permeability and transcytosis

Mathiesen Janiurek, M.; Christoffersen, C.; Kucharz, K.; Lauritzen, M.

10.1101/684894 — neuroscience — Posted on 2019-06-27

230 Invariants of Frameshifted Variants

Bartonek, L.; Braun, D.; Zagrovic, B.

10.1101/684076 — molecular biology — Posted on 2019-06-27

231 Elucidation of protein-protein interactions necessary for maintenance of the BCR-ABL signaling complex

Gregor, T.; Kunova Bosakova, M.; Nita, A.; Abraham, S. P.; Fafilek, B.; Cernohorsky, N. H.; Rynes, J.; Foldynova-Trantirkova, S.; Mayer, J.; Trantirek, L.; Krejci, P.

10.1101/684480 — molecular biology — Posted on 2019-06-27

232 CD44 alternative splicing is a sensor of intragenic DNA methylation in tumors

Batsche, E.; Mauger, O.; Kornobis, E.; Hopkins, B.; Hamner-Llyod, C.; Muchardt, C.

10.1101/685651 — molecular biology — Posted on 2019-06-27

233 Higher stochasticity of microbiota composition in seedlings of domesticated wheat compared to wild wheat

Ozkurt, E.; Hassani, M. A.; Sesiz, U.; Kuenzel, S.; Dagan, T.; Ozkan, H.; Stukenbrock, E.

10.1101/685164 — microbiology — Posted on 2019-06-27

234 How do grasshopper Oxya chinensis respond to the artificially infected bacteria?

Zhang, X.; Zhang, K.

10.1101/683680 — immunology — Posted on 2019-06-27

235 Altered frequency of CD24highCD38high transitional B cells in patients with cardiac involvement of chronic Chagas disease.

Girard, M. C.; Acevedo, G. R.; Ossowski, M. S.; Alcaraz, P. B.; Fernandez, M.; Hernandez, Y.; Chadi, R.; Gomez, K. A.

10.1101/684589 — immunology — Posted on 2019-06-27

236 Local rewiring of genome - nuclear lamina interactions by transcription.

Brueckner, L.; Zhao, P. A.; van Schaik, T.; Leemans, C.; Sima, J.; Peric-Hupkes, D.; Gilbert, D. M.; van Steensel, B.

10.1101/685255 — genomics — Posted on 2019-06-27

237 Widespread positive selection for mRNA secondary structure at synonymous sites in domesticated yeast

Yu, M.; Guo, W.; Wang, Q.; Chen, J.-Q.

10.1101/685016 — evolutionary biology — Posted on 2019-06-27

238 Estrogen controls mTOR signaling and mitochondrial function via WNT4 in lobular carcinoma

Rao, D. M.; Bordeaux, E. K.; Hicks, H. M.; Oesterreich, S.; Sikora, M. J.

10.1101/684530 — cancer biology — Posted on 2019-06-27

239 Defective base excision repair in the response to DNA damaging agents in triple negative breast cancer

Lee, K. J.; Piett, C. G.; Andrews, J. F.; Mann, E.; Nagel, Z. D.; Gassman, N. R.

10.1101/685271 — cancer biology — Posted on 2019-06-27

240 The effect of meal temperature on heart rate in Rhodnius prolixus

Lahondere, C.; Buradino, M.; Lazzari, C.

10.1101/685305 — physiology — Posted on 2019-06-27

241 Targeting the Administration of Ecdysterone in Doping Control Samples

Parr, M. K.; Ambrosio, G.; Wuest, B.; Mazzarino, M.; de la Torre, X.; Sibilia, F.; Joseph, J. F.; Diel, P.; Botre, F.

10.1101/685230 — pharmacology and toxicology — Posted on 2019-06-27

242 The emergence of successful Streptococcus pyogenes lineages through convergent pathways of capsule loss and recombination directing high toxin expression

Turner, C. E.; Holden, M. T.; Blane, B.; Horner, C.; Peacock, S. J.; Sriskandan, S.

10.1101/684167 — microbiology — Posted on 2019-06-27

243 In silico identification of putative Trypanosoma cruzi enolase inhibitors

Valera-Vera, E.; Saye, M.; Reigada, C.; Miranda, M. R.; Pereira, C. A.

10.1101/685206 — microbiology — Posted on 2019-06-27

244 Scop3P: a comprehensive resource of human phosphosites within their full context

Ramasamy, P.; Turan, D.; Tichshenko, N.; Hulstaert, N.; Vandermarliere, E.; Vranken, W.; Martens, L.

10.1101/684985 — bioinformatics — Posted on 2019-06-27

245 Computational design of anti-CRISPR proteins with improved inhibition potency and expanded specificity

Mathony, J.; Harteveld, Z.; Schmelas, C.; Upmeier zu Belzen, J.; Aschenbrenner, S.; Hoffmann, M. D.; Stengl, C.; Scheck, A.; Rosset, S.; Grimm, D.; Eils, R.; Correia, B. E.; Niopek, D.

10.1101/685032 — synthetic biology — Posted on 2019-06-27

246 Long-term activity drives dendritic branch elaboration of a C. elegans sensory neuron

Cohn, J.; Cebul, E.; Valperga, G.; de Bono, M.; Heiman, M.; Pierce, J.

10.1101/685339 — neuroscience — Posted on 2019-06-27

247 Gene - Environment Interaction: A TPH2 polymorphism and early life stress shape brain architecture and anxious avoidant behavior

Liu, C.; Xu, L.; Li, J.; Zhou, F.; Yang, X.; Zheng, X.; Fu, M.; Li, K.; Sindermann, C.; Montag, C.; Ma, Y.; Scheele, D.; Ebstein, R. P.; Kendrick, K. M.; Becker, B.

10.1101/685099 — neuroscience — Posted on 2019-06-27

248 Using a bar-coded AAV capsid library to select for novel clinically relevant gene therapy vectors

Pekrun, K.; De Alencastro, G.; Luo, Q.-J.; Kim, Y.; Nygaard, S.; Galivo, F.; Zhang, F.; Song, R.; Tiffany, M.; Xu, J.; Hebron, M.; Grompe, M.; Kay, M. A.

10.1101/683672 — genetics — Posted on 2019-06-27

249 Laws of diversity and variation in microbial communities

Grilli, J.

10.1101/680454 — ecology — Posted on 2019-06-27

250 Prenatal alcohol exposure programs offspring disease: Impacts on metabolic health and dietary preference in a rat model of acute exposure

Nguyen, T. M.; Steane, S. E.; Moritz, K. M.; Akison, L. K.

10.1101/684639 — developmental biology — Posted on 2019-06-27

251 SmartRNASeqCaller: improving germline variant calling from RNAseq

Bosio, M.; Valencia, A.; Capella-Gutierrez, S.

10.1101/684993 — bioinformatics — Posted on 2019-06-27

252 Synergic Interaction between Permethrin and Bt toxins discovered using RNA-seq

Sakamoto, T.; Kozaki, T.; Ogata, N.

10.1101/684803 — zoology — Posted on 2019-06-27

253 Orbitofrontal cortex promotes trial-by-trial learning of risky, but not spatial, biases

Constantinople, C. M.; Piet, A. T.; Bibawi, P.; Akrami, A.; Kopec, C. D.; Brody, C. D.

10.1101/685107 — neuroscience — Posted on 2019-06-27

254 Removal of early senescent cells protects retinal ganglion cells loss in experimental ocular hypertension.

Rocha, L. R.; Nguyen Huu, V. A.; Palomino La torre, C.; Xu, Q.; Jabari, M.; Krawczyk, M.; Weinreb, R. N.; Skowronska-Krawczyk, D.

10.1101/684811 — molecular biology — Posted on 2019-06-27

255 QTL analysis of macrophages from an AKR/JxDBA/2J intercross identified the Gpnmb gene as a modifier of lysosome function

Robinet, P.; Ritchey, B.; Alzayed, A. M.; DeGeorgia, S.; Schodowski, E.; Lorkowski, S. W.; Smith, J. D.

10.1101/684118 — genetics — Posted on 2019-06-27

256 Genome-wide analysis reveals a switch in the translational program upon oocyte meiotic resumption

Luong, X. G.; Daldello, E. M.; Rajkovic, G.; Yang, C.-R.; Conti, M.

10.1101/685594 — developmental biology — Posted on 2019-06-27

257 Endocytosis of very low-density lipoprotein particles: an unexpected mechanism for lipid acquisition by breast cancer cells

Lupien, L.; Bloch, K.; Dehairs, J.; Feng, W.; Davis, W.; Dennis, T.; Swinnen, J.; Wells, W.; Smits, N.; Keummerle, N.; Kinlaw, W.

10.1101/684274 — cancer biology — Posted on 2019-06-27

258 The antibody-based delivery of interleukin-12 to solid tumors boosts NK and CD8+ T cell activity and synergizes with immune check-point inhibitors

Puca, E.; Probst, P.; Stringhini, M.; Murer, P.; Pellegrini, G.; Cazzamalli, S.; Gouyou, B.; Wulhfard, S.; Matasci, M.; Villa, A.; Neri, D.

10.1101/684100 — cancer biology — Posted on 2019-06-27

259 Analyzing the heterogeneity of rule-based EHR phenotyping algorithms in CALIBER and the UK Biobank

Denaxas, S.; Parkinson, H.; Fitzpatrick, N.; Sudlow, C.; Hemingway, H.

10.1101/685156 — bioinformatics — Posted on 2019-06-27

260 Non-additive effects of changing the cytochrome P450 ensemble: incorporation of CYP2E1 into human liver microsomes and its impact on CYP1A2

Davydova, N. Y.; Dangi, B.; Maldonado, M. A.; Vavilov, N. E.; Zgoda, V. G.; Davydov, D. R.

10.1101/685545 — biochemistry — Posted on 2019-06-27

261 Telomere length and oxidative stress in the progression of Alzheimer’s disease

Martinez-Gonzalez, K. L.; Islas-Hernandez, A.; Martinez-Ezquerro, J. D.; Bermudez-Rattoni, F.; Garcia-delaTorre, P.

10.1101/684365 — neuroscience — Posted on 2019-06-27

262 Dynamics between horizontal gene transfer and acquired antibiotic resistance in S. Heidelberg following in vitro incubation in broiler ceca

Oladeinde, A.; Cook, K.; Lakin, S. M.; Abdo, Z.; Looft, T. P.; Herrington, K.; Zock, G.; Lawrence, J. P.; Thomas, J.; Beaudry, M. S.; Glenn, T.

10.1101/684787 — microbiology — Posted on 2019-06-27

263 MitoFinder: efficient automated large-scale extraction of mitogenomic data in target enrichment phylogenomics

Allio, R.; Schomaker-Bastos, A.; Romiguier, J.; Prosdocimi, F.; Nabholz, B.; Delsuc, F.

10.1101/685412 — evolutionary biology — Posted on 2019-06-27

264 Dark diversity reveals importance of biotic resources and competition for plant diversity across broad environmental gradients

Flojgaard, C.; Valdez, J.; Dalby, L.; Moeslund, J. E.; Clausen, K. K.; Ejrnaes, R.; Partel, M.; Brunbjerg, A. K.

10.1101/685040 — ecology — Posted on 2019-06-27

265 Bacteria associated with flowers affect the reproductive success of Brassica napus L. via scent-mediated interactions with pollinators

Farre-Armengol, G.; Junker, R. R.

10.1101/685453 — ecology — Posted on 2019-06-27

266 Towards automated control of embryonic stem cell pluripotency

Khazim, M. R.; Postiglione, L.; Pedone, E.; Rocca, D.; Zahra, C.; Marucci, L.

10.1101/685297 — developmental biology — Posted on 2019-06-27

267 Homo- and heterodimerization of bHLH transcription factors balance stemness and bipotential differentiation

Puig-Barbe, A.; de Navascues, J.

10.1101/685347 — developmental biology — Posted on 2019-06-27

268 Endothelial struts, a mechanism to generate large lumenized blood vessels de novo

Weijts, B.; Shaked, I.; Li, W.; Ginsberg, M.; Kleinfeld, D.; Traver, D.

10.1101/685180 — developmental biology — Posted on 2019-06-27

269 Discovery of influenza drug resistance mutations and host therapeutic targets using a human airway chip

Si, L.; Prantil-Baun, R.; Benam, K.; Bai, H.; Rodas, M.; Burt, M.; Ingber, D.

10.1101/685552 — bioengineering — Posted on 2019-06-27

270 Complement C3 and C3aR differentially impact on learned fear and innate anxiety

Westacott, L. J.; Naan, N.; Moon, A. L.; Brain, S. A.; Bush, E.-L.; Toneva, M.; Reddaway, J.; Owen, M. J.; Hall, J.; Hughes, T. R.; Morgan, B. P.; Gray, W. P.; Humby, T.; Wilkinson, L.

10.1101/685537 — neuroscience — Posted on 2019-06-27

271 Dynamic reconfiguration of functional brain networks during working memory training

Finc, K.; Bonna, K.; He, X.; Lydon, D. M.; Kühn, S.; Duch, W.; Bassett, D. S.

10.1101/685487 — neuroscience — Posted on 2019-06-27

272 Simple spike dynamics of Purkinje cells in the macaque vestibulo-cerebellum reflect sensory prediction error

Laurens, J.; Angelaki, D.

10.1101/685461 — neuroscience — Posted on 2019-06-27

273 Guilty by association: How group-based (collective) guilt arises in the brain

Li, Z.; Yu, H.; Zhou, Y.; Kalenscher, T.; Zhou, X.

10.1101/683730 — neuroscience — Posted on 2019-06-27

274 Strains used in whole organism Plasmodium falciparum vaccine trials differ in genome structure, sequence, and immunogenic potential

Moser, K. A.; Drabek, E. F.; Dwivedi, A.; Crabtree, J.; Stucke, E. M.; Dara, A.; Shah, Z.; Adams, M.; Li, T.; Rodrigues, P. T.; Koren, S.; Phillippy, A. M.; Ouattara, A.; Lyke, K. E.; Sadzewicz, L.; Tallon, L. J.; Spring, M. D.; Jongsakul, K.; Lon, C.; Saunders, D. L. S. L.; Ferreira, M. U.; Nyunt, M. M.; Laufer, M. K.; Travassos, M. A.; Sauerwein, R. W.; Takala-Harrison, S.; Fraser, C. M.; Sim, B. K. L.; Hoffman, S. L.; Plowe, C. V.; Silva, J. C.

10.1101/684175 — genomics — Posted on 2019-06-27

275 FAAH, SLC6A4, and BDNF variants are not associated with psychosocial stress and mental health outcomes in a population of Syrian refugee youth

Clukay, C. J.; Matarazzo, A.; Dajani, R.; Hadfield, K.; Panter-Brick, C.; Mulligan, C. J.

10.1101/685636 — genetics — Posted on 2019-06-27

276 Movement patterns of urban free-roaming dogs: implications for rabies control in Arequipa, Peru

Raynor, B.; De la Puente, M.; Johnson, A.; Diaz-Espinoza, E.; Levy, M. Z.; Castillo-Neyra, R.

10.1101/684381 — ecology — Posted on 2019-06-27

277 Hypoxia-Induced PIM Kinase and Laminin-Activated Integrin α6 Mediate Resistance to PI3K Inhibitors in Bone-Metastatic CRPC

Toth, R.; Tran, J.; Muldong, M.; Nollet, E.; Schulz, V.; Jensen, C.; Hazelhurst, L.; Corey, E.; Durden, D.; Jamieson, C.; Miranti, C.; Warfel, N.

10.1101/685602 — cancer biology — Posted on 2019-06-27

278 Di-Ras2 Promotes Renal Cell Carcinoma Formation by Activating the MAPK Pathway in the Absence of VHL

Rao, H.; Li, X.; Liu, M.; Liu, J.; Li, X.; Xu, J.; Li, L.; Gao, W.-Q.

10.1101/683821 — cancer biology — Posted on 2019-06-27

279 \"The Bold are the Sociable\": Personality, sociability and lateralized utilization of brain hemisphere in the juveniles of a megafish Deccan Mahseer (Tor khudree)

Varma, V.; Vasoya, H.; Jain, A.; Binoy, V. V.

10.1101/683532 — animal behavior and cognition — Posted on 2019-06-27

280 Inhibition Controls Receptive Field Size, Sensitivity, and Response Polarity of Direction Selective Ganglion Cells Near the Threshold of Vision

Yao, X.; Field, G. D.

10.1101/683961 — neuroscience — Posted on 2019-06-27

281 Lateral septum neurotensin neurons link stress and anorexia

Azevedo, E.; Tan, B.; Pomeranz, L.; Schneeberger, M.; Fetcho, R.; Doerig, K.; Liston, C.; Friedman, J.; Stern, S.

10.1101/683946 — neuroscience — Posted on 2019-06-27

282 The advantages of radial trajectories for vessel-selective dynamic angiography with arterial spin labeling

Berry, E. S. K.; Jezzard, P.; Okell, T.

10.1101/683599 — neuroscience — Posted on 2019-06-27

283 A molecularly defined insular cortex --> central amygdala circuit mediates conditioned overconsumption of food.

Stern, S.; Pomeranz, L.; Azevedo, E.; Doerig, K.; Friedman, J.

10.1101/684498 — neuroscience — Posted on 2019-06-27

284 Common genetic variation indicates separate etiologies for periventricular and deep white matter hyperintensities

Armstrong, N. J.; Mather, K. A.; Sargurupremraj, M.; Knol, M. J.; Malik, R.; Satizabal, C. L.; Yanek, L. R.; Wen, W.; Gudnason, V.; Dueker, N. D.; Elliott, L. T.; Hofer, E.; Jahanshad, N.; Li, S.; Logue, M. A.; Luciano, M.; Scholz, M.; Smith, A. V.; Trompet, S. S.; Vojinovic, D.; Xia, R.; Alfaro-Almagro, F.; Ames, D.; Amin, N.; Amouyel, P.; Beiser, A. S.; Brodaty, H.; Deary, I. J.; Fennema-Notestine, C.; Gampawar, P. G.; Gottesman, R. F.; Griffanti, L.; Jack, C. R.; Jenkinson, M.; Jiang, J.; Kral, B. G.; Kwok, J. B.; Lampe, L.; Liewald, D. C.; Maillard, P.; Marchini, J.; Bastin, M. E.; Mazoyer

10.1101/683367 — neuroscience — Posted on 2019-06-27

285 Model-free or muddled models in the two-stage task?

Feher da Silva, C.; Hare, T.

10.1101/682922 — neuroscience — Posted on 2019-06-27

286 Fitness costs of parasites explain multiple life history tradeoffs in a wild mammal

Albery, G. F.; Nussey, D. H.; Pemberton, J. M.

10.1101/683094 — ecology — Posted on 2019-06-27

287 Actomyosin regulation by Eph receptor signaling couples boundary cell formation to border sharpness

Cayuso, J.; Xu, Q.; Addison, M.; Wilkinson, D.

10.1101/683631 — developmental biology — Posted on 2019-06-27

288 Single-cell genomic atlas of great ape cerebral organoids uncovers human-specific features of brain development

Kanton, S.; Boyle, M. J.; He, Z.; Santel, M.; Weigert, A.; Sanchis Calleja, F.; Sidow, L.; Fleck, J.; Guijarro, P.; Han, D.; Qian, Z.; Heide, M.; Huttner, W.; Khaitovich, P.; Pääbo, S.; Treutlein, B.; Camp, J. G.

10.1101/685057 — developmental biology — Posted on 2019-06-27

289 Insights into LIS1 function in cargo-adapter-mediated dynein activation in vivo

Qiu, R.; Zhang, J.; Xiang, X.

10.1101/683995 — cell biology — Posted on 2019-06-27

290 Microenvironment-contextual cell signaling is attenuated with age

Ertsas, H.; LaBarge, M.; Lorens, J.

10.1101/684977 — cell biology — Posted on 2019-06-27

291 Scaffold subunits support associated subunit assembly in the Chlamydomonas ciliary nexin-dynein regulatory complex

Gui, L.; Song, K.; Tristchler, D.; Bower, R.; Si, Y.; Dai, A.; Augsperger, K.; Sakizadeh, J.; Grzemska, M.; Ni, T.; Porter, M. E.; Nicastro, D.

10.1101/684316 — cell biology — Posted on 2019-06-27

292 Single-cell analysis of childhood leukemia reveals a link between developmental states and ribosomal protein expression as a source of intra-individual heterogeneity

Caron, M.; St-Onge, P.; Sontag, T.; Wang, Y. C.; Richer, C.; Ragoussis, I.; Sinnett, D.; Bourque, G.

10.1101/683854 — cancer biology — Posted on 2019-06-27

293 Label-free, real-time on-chip sensing of living cancer cell via grating-coupled surface plasmon resonance

Borile, G.; Rossi, S.; Filippi, A.; Gazzola, E.; Capaldo, P.; Tregnago, C.; Pigazzi, M.; Romanato, F.

10.1101/684936 — biophysics — Posted on 2019-06-27

294 Sequential Operations Revealed by Serendipitous Feature Selectivity in Frontal Eye Field

Lowe, K. A.; Schall, J. D.

10.1101/683144 — neuroscience — Posted on 2019-06-27

295 3D imaging of undissected optically cleared Anopheles stephensi mosquitoes infected with Plasmodium parasites

De Niz, M.; Kehrer, J.; Brancucci, N. M. B.; Moalli, F.; Reynaud, E. G.; Stein, J. V.; Frischknecht, F.

10.1101/682054 — microbiology — Posted on 2019-06-27

296 Oropouche virus cases identified in Ecuador using an optimised rRT-PCR informed by metagenomic sequencing

Wise, E. L.; Marquez, S.; Mellors, J.; Paz, V.; Atkinson, B.; Gutierrez, B.; Zapata, S.; Coloma, J.; Pybus, O. G.; Jackson, S. K.; Trueba, G.; Fejer, G.; Logue, C. H.; Pullan, S. T.

10.1101/683953 — genomics — Posted on 2019-06-27

297 Polarized Entamoeba: A model for stable bleb driven motility

Ghosh, S. K.; Krishnan, D.

10.1101/683813 — cell biology — Posted on 2019-06-27

298 The anti-apoptotic proteins Bcl-2 and Bcl-xL suppress Beclin1/Atg6-mediated lethal autophagy in polyploid cells

Zhang, J.; Zhang, S.; Wu, F.; Shi, Q.; Allen, T.; You, F.; Yang, D.

10.1101/684266 — cancer biology — Posted on 2019-06-27

299 A Novel Approach on dTMS Coil Design Based on Tractography and Neural Cable Theory

Mohtadi Jafari, A.; Abdolali, A.

10.1101/683870 — neuroscience — Posted on 2019-06-27

300 Functional convergence of autonomic and sensorimotor processing in the lateral cerebellum

Romano, V.; Reddington, A. L.; Cazzanelli, S.; Negrello, M.; Bosman, L. W. J.; De Zeeuw, C. I.

10.1101/683573 — neuroscience — Posted on 2019-06-27

301 Mitochondrial impairment activates the Wallerian pathway through depletion of NMNAT2 leading to SARM1-dependent axon degeneration

Loreto, A.; Hill, C. S.; Hewitt, V. L.; Orsomando, G.; Angeletti, C.; Gilley, J.; Lucci, C.; Sanchez-Martinez, A.; Whitworth, A. J.; Conforti, L.; Dajas-Bailador, F.; Coleman, M.

10.1101/683342 — neuroscience — Posted on 2019-06-27

302 Early alterations in cortical and cerebellar regional brain growth in Down Syndrome: An in-vivo fetal and neonatal MRI assessment

Patkee, P. A.; Baburamani, A. A.; Kyriakopoulou, V.; Davidson, A.; Avini, E.; Dimitrova, R.; Allsop, J.; Hughes, E.; Kangas, J.; McAlonan, G.; Rutherford, M.

10.1101/683656 — neuroscience — Posted on 2019-06-27

303 Dysfunction of ventral tegmental area GABA neurons causes mania-like behavior

Yu, X.; Ba, W.; Zhao, G.; Ma, Y.; Harding, E. C.; Yin, L.; Wang, D.; Shi, Y.; Vyssotski, A. L.; Dong, H.; Franks, N. P.; Wisden, W.

10.1101/684142 — neuroscience — Posted on 2019-06-27

304 Asymmetric, dynamic adaptation in prefrontal cortex during dichotic listening tasks

Fisher, J. A. N.; Gumenchuk, I.; Rogovin, O.; Yodh, A. G.; Busch, D. R.

10.1101/683987 — neuroscience — Posted on 2019-06-27

305 Neuromodulatory selection of motor neuron recruitment patterns in a visuomotor behavior increases speed

Jha, U.; Thirumalai, V.

10.1101/683649 — neuroscience — Posted on 2019-06-27

306 FMRF Gene Expression In The Nervous System Of The Squid Doryteuthis pealei* Hatchling

Burbach, J. P. H.; Grant, P.; Senft, S.; Kripke, L.; Hellemons, A. J. C. G. M.; Pant, H. C.

10.1101/684001 — neuroscience — Posted on 2019-06-27

307 Two pathways for thiosulfate oxidation in the alphaproteobacterial chemolithotroph Paracoccus thiocyanatus SST

Rameez, M. J.; Pyne, P.; Mandal, S.; Chatterjee, S.; Alam, M.; Bhattacharya, S.; Mondal, N.; Sarkar, J.; Ghosh, W.

10.1101/683490 — microbiology — Posted on 2019-06-27

308 Human Milk Oligosaccharides modulate the risk for preterm birth in a microbiome dependent and independent manner

Pausan, M.-R.; Kolovetsiou-Kreiner, V.; Richter, G. L.; Madl, T.; Giselbrecht, E.; Weiss, E.-C.; Jantscher-Krenn, E.; Moissl-Eichinger, C.

10.1101/683714 — microbiology — Posted on 2019-06-27

309 Insights into human genetic variation and population history from 929 diverse genomes

Bergström, A.; McCarthy, S. A.; Hui, R.; Almarri, M. A.; Ayub, Q.; Danecek, P.; Chen, Y.; Felkel, S.; Hallast, P.; Kamm, J.; Blanche, H.; Deleuze, J.-F.; Cann, H.; Mallick, S.; Reich, D.; Sandhu, M. S.; Skoglund, P.; Scally, A.; Xue, Y.; Durbin, R.; Tyler-Smith, C.

10.1101/674986 — genomics — Posted on 2019-06-27

310 Evolutionary success of a parasitic B chromosome rests on gene content

Ruiz-Ruano, F. J.; Navarro-Dominguez, B.; Lopez-Leon, M. D.; Cabrero, J.; Camacho, J. P. M.

10.1101/683417 — evolutionary biology — Posted on 2019-06-27

311 Pac1/LIS1 promotes an uninhibited conformation of dynein that coordinates its localization and activity

Marzo, M. G.; Griswold, J. M.; Markus, S. M.

10.1101/684290 — cell biology — Posted on 2019-06-27

312 Tensor decomposition-Based Unsupervised Feature Extraction Applied to Single-Cell Gene Expression Analysis

Taguchi, Y.-h.; Turki, T.

10.1101/684225 — bioinformatics — Posted on 2019-06-27

313 Enhancing the biological relevance of Gene Co-expression Networks: A plant mitochondrial case study

Law, S. R.; Kellgren, T.; Bjork, R.; Ryden, P.; Keech, O.

10.1101/682492 — bioinformatics — Posted on 2019-06-27

314 Octopi: Open configurable high-throughput imaging platform for infectious disease diagnosis in the field

Li, H.; Soto-Montoya, H.; Voisin, M.; Valenzuela, L. F.; Prakash, M.

10.1101/684423 — bioengineering — Posted on 2019-06-27

315 Validation and characterisation of a wheat GENIE3 network using an independent RNA-Seq dataset

Harrington, S. A.; Backhaus, A. E.; Singh, A.; Hassani-Pak, K.; Uauy, C.

10.1101/684183 — plant biology — Posted on 2019-06-27

316 MAP2 is Hyperphosphorylated in Schizophrenia and Alters its Function

Grubisha, M. J.; Sun, X.; MacDonald, M. L.; Garver, M.; Sun, Z.; DeGiosio, R. A.; Lewis, D. A.; Nates, N. A.; Camacho, C.; Ding, Y.; Sweet, R. A.

10.1101/683912 — neuroscience — Posted on 2019-06-27

317 Recovery of glutamatergic and GABAergic protein expression in visual cortex after monocular deprivation

Balsor, J. L.; Jones, D. G.; Murphy, K. M.

10.1101/684191 — neuroscience — Posted on 2019-06-27

318 Fighting the spread of antibiotic resistance with bacterial competence inhibitors

Domenech, A.; Brochado, A. R.; Sender, V.; Hentrich, K.; Henriques-Normark, B.; Typas, A.; Veening, J.-W.

10.1101/683920 — microbiology — Posted on 2019-06-27

319 Unexpected features of GC-AG introns in long non-coding and protein-coding genes suggest a new role as regulatory elements

Abou Alezz, M.; Celli, L.; Belotti, G.; Lisa, A.; Bione, S.

10.1101/683938 — genomics — Posted on 2019-06-27

320 Ciliary photoreceptors in sea urchin larvae indicate pan-deuterostome cell type conservation

Valencia, J. E.; Feuda, R.; Mellott, D. O.; Burke, R.; Peter, I. S.

10.1101/683318 — developmental biology — Posted on 2019-06-27

321 A non-canonical unfolded protein response pathway and mitochondrial dynamics control the number of ER-mitochondria contact sites

Kojima, R.; Kakimoto, Y.; Shinmyo, M.; Kurokawa, K.; Nakano, A.; Endo, T.; Tamura, Y.

10.1101/684753 — cell biology — Posted on 2019-06-27

322 Hubble2D6: A deep learning approach for predicting drug metabolic activity

McInnes, G.; Dalton, R.; Sangkuhl, K.; Whirl-Carrillo, M.; Lee, S.-b.; Altman, R. B.; Woodahl, E. L.

10.1101/684357 — bioinformatics — Posted on 2019-06-27

323 A quantitative framework for evaluating single-cell data structure preservation by dimensionality reduction techniques

Heiser, C. N.; Lau, K. S.

10.1101/684340 — bioinformatics — Posted on 2019-06-27

324 Ammonia inhibits energy metabolism in astrocytes in a rapid and glutamate dehydrogenase 2-dependent manner

Drews, L.; Zimmermann, M.; Poss, R. E.; Brilhaus, D.; Bergmann, L.; Wiek, C.; Piekorz, R. P.; Weber, A. P. M.; Mettler-Altmann, T.; Reichert, A. S.

10.1101/683763 — biochemistry — Posted on 2019-06-27

325 CHD4 slides nucleosomes by decoupling entry- and exit-side DNA translocation

Zhong, Y.; Paudel, B. P.; Ryan, D.; Low, J.; Franck, C.; Patel, K.; Benward, M.; Payne, R.; van Oijen, A.; Mackay, J.

10.1101/684860 — biochemistry — Posted on 2019-06-27

326 Silencing PHOSPHOENOLPYRUVATE CARBOXYLASE1 in the Obligate Crassulacean Acid Metabolism Species Kalanchoë laxiflora causes Reversion to C3-like Metabolism and Amplifies Rhythmicity in a Subset of Core Circadian Clock Genes

Boxall, S. F.; Kadu, N.; Dever, L. V.; Knerova, J.; Waller, J. L.; Gould, P. J. D.; Hartwell, J.

10.1101/684050 — plant biology — Posted on 2019-06-27

327 Multiplexed code of navigation variables in the anterior limbic system

Laurens, J.; Abrego, A.; Cham, H.; Popeney, B.; Yu, Y.; Rotem, N.; Aarse, J.; Dickman, J. D.; Angelaki, D. E.

10.1101/684464 — neuroscience — Posted on 2019-06-27

328 Establishing BARA: Biological Nitrogen Fixation for Future Agriculture

Khan, M. S.; Olds, J. L.; Koizumi, N.

10.1101/684324 — microbiology — Posted on 2019-06-27

329 MR-LDP: a two-sample Mendelian randomization for GWAS summary statistics accounting linkage disequilibrium and horizontal pleiotropy

Cheng, Q.; Yang, Y.; Shi, X.; Yang, C.; Peng, H.; Liu, J.

10.1101/684746 — genetics — Posted on 2019-06-27

330 Evaluating species distribution models with discrimination accuracy is uninformative for many applications

Warren, D. L.; Matzke, N. J.; Iglesias, T. L.

10.1101/684399 — ecology — Posted on 2019-06-27

331 Uncovering the cell type specificity of blood sample derived gene signatures using RNA expression data

Pomaznoy, M.; Ha, B.; Peters, B.

10.1101/684159 — bioinformatics — Posted on 2019-06-27

332 Expression reduction of biallelically transcribed X-linked genes during the human female preimplantation development

Reinius, B.; Sandberg, R.

10.1101/682286 — molecular biology — Posted on 2019-06-27

333 The mutational footprints of cancer therapies

Pich, O.; Muinos, F.; Lolkema, M. P.; Steeghs, N.; Gonzalez-Perez, A.; Lopez-Bigas, N.

10.1101/683268 — genomics — Posted on 2019-06-27

334 RADICL-seq identifies general and cell type-specific principles of genome-wide RNA-chromatin interactions

Bonetti, A.; Agostini, F.; Suzuki, A. M.; Hashimoto, K.; Pascarella, G.; Gimenez, J.; Roos, L.; Nash, A. J.; Ghilotti, M.; Cameron, C. J.; Valentine, M.; Medvedeva, Y. A.; Noguchi, S.; Agirre, E.; Kashi, K.; Samudyata, S.; Luginbuehl, J.; Cazzoli, R.; Agrawal, S.; Luscombe, N. M.; Blanchette, M.; Kasukawa, T.; De Hoon, M.; Arner, E.; Lenhard, B.; Plessy, C.; Castelo-Branco, G.; Orlando, V.; Carninci, P.

10.1101/681924 — genomics — Posted on 2019-06-27

335 Mental Health, Schooling Attainment and Polygenic Scores: Are There Significant Gene-Environment Associations?

Amin, V.; Behrman, J. R.; Fletcher, J. M.; Flores, C. A.; Flores-Lagunes, A.; Kohler, H. P.

10.1101/684688 — genomics — Posted on 2019-06-27

336 Split-gene drive system provides flexible application for safe laboratory investigation and potential field deployment

Lopez del Amo, V.; Bishop, A. L.; Sanchez C., H. M.; Bennett, J. B.; Feng, X.; Marshall, J. M.; Bier, E.; Gantz, V. M.

10.1101/684597 — genetics — Posted on 2019-06-27

337 Neonatal genetics of gene expression reveal the origins of autoimmune and allergic disease risk

Huang, Q. Q.; Tang, H. H. F.; Teo, S. M.; Ritchie, S. C.; Nath, A. P.; Brozynska, M.; Salim, A.; Bakshi, A.; Holt, B. J.; Mok, D.; Khor, C. C.; Sly, P. D.; Holt, P. G.; Holt, K. E.; Inouye, M.

10.1101/683086 — genetics — Posted on 2019-06-27

338 A geographical cline in craniofacial morphology across populations of Mesoamerican lake-dwelling fishes

Powers, A. K.; Garita-Alvarado, C.; Rodiles-Hernandez, R.; Berning, D. J.; Gross, J. B.; Ornelas-Garcia, C. P.

10.1101/684431 — evolutionary biology — Posted on 2019-06-27

339 Restoring ancestral phenotypes by reduction of plasticity is a general pattern in gene expression during adaptation to different stressors in Tribolium castaneum

Koch, E.; Guillaume, F.

10.1101/683771 — evolutionary biology — Posted on 2019-06-27

340 Alcohol increases aggression in flies

Park, A.; Tran, T.; Scheuermann, E.; Gutierrez, L.; Stojanik, C.; Plyler, J.; Thompson, G.; Smith, D.; Atkinson, N. S.

10.1101/685529 — ecology — Posted on 2019-06-27

341 LongAxis: a MATLAB-based program for 3D quantitative analysis of epithelial cell shape and orientation

Carney, K. R.; Bryan, C. D.; Gordon, H. B.; Kwan, K. M.

10.1101/684555 — developmental biology — Posted on 2019-06-27

342 HB-EGF Signaling is Required for Glucose-Induced Pancreatic β-Cell Proliferation in Rats

Maachi, H.; Fergusson, G.; Ethier, M.; Brill, G. N.; Katz, L. S.; Honig, L. B.; Metukuri, M. R.; Scott, D. K.; Ghislain, J.; Poitout, V.

10.1101/683003 — cell biology — Posted on 2019-06-27

343 Should virus capsids assemble perfectly? A simple equilibrium model for defects

Spiriti, J.; Conway, J.; Zuckerman, D. M.

10.1101/684563 — biophysics — Posted on 2019-06-27

344 Dancing Molecules: Rewiring Cooperative Communications within 14-3-3 ζ Docking Proteins

Davis, L. K.

10.1101/683466 — biophysics — Posted on 2019-06-27

345 Modeling bacteria-based therapy in tumor spheroids

Mascheroni, P.; Meyer-Hermann, M.; Hatzikirou, H.

10.1101/683839 — biophysics — Posted on 2019-06-27

346 Transcription reinitiation by recycling RNA polymerase that diffuses on DNA after releasing terminated RNA

Kang, W.; Ha, K. S.; Uhm, H.; Park, K.; Lee, J. Y.; Hohng, S.; Kang, C.

10.1101/684738 — biophysics — Posted on 2019-06-27

347 Processivity and Velocity for Motors Stepping on Periodic Tracks

Mugnai, M. L.; Caporizzo, M.; Goldman, Y.; Thirumalai, D.

10.1101/684696 — biophysics — Posted on 2019-06-27

348 GraphDTA: prediction of drug-target binding affinity using graph convolutional networks

Nguyen, T.; Le, H.; Venkatesh, S.

10.1101/684662 — bioinformatics — Posted on 2019-06-27

349 HiChIP-Peaks: A HiChIP peak calling algorithm

Shi, C.; Rattray, M.; Orozco, G.

10.1101/682781 — bioinformatics — Posted on 2019-06-27

350 ShadowCaster: compositional methods under the shadow of phylogenetic models for the detection of horizontal gene transfer events in prokaryotes.

Sanchez-Soto, D.; Agüero-Chapin, G.; Armijos-Jaramillo, V.; Perez-Castillo, Y.; Tejera, E.; Antunes, A.; Sanchez-Rodriguez, A.

10.1101/684704 — bioinformatics — Posted on 2019-06-27

351 Graphene Quantum Dot Oxidation Governs Noncovalent Biopolymer Adsorption

Jeong, S.; Pinals, R. L.; Dharmadhikari, B.; Song, H.; Kalluri, A.; Debnath, D.; Qi, W.; Ham, M.-H.; Patra, P.; Landry, M.

10.1101/684670 — bioengineering — Posted on 2019-06-27

352 Human condensin I and II drive extensive ATP-dependent compaction of nucleosome-bound DNA

Kong, M.; Cutts, E.; Pan, D.; Beuron, F.; Kaliyappan, T.; Xue, C.; Morris, E.; Musacchio, A.; Vannini, A.; Greene, E.

10.1101/683540 — biochemistry — Posted on 2019-06-27

353 Lis1 promotes the formation of maximally activated cytoplasmic dynein-1 complexes

Htet, Z. M.; Gillies, J. P.; Baker, R. W.; Leschziner, A. E.; DeSantis, M. E.; Reck-Peterson, S. L.

10.1101/683052 — biochemistry — Posted on 2019-06-27

354 Reflexive gaze following in common marmoset monkeys

Spadacenta, S.; Dicke, P. W.; Thier, P.

10.1101/682971 — animal behavior and cognition — Posted on 2019-06-27

355 Circadian control of intrinsic heart rate via a sinus node clock and the pacemaker channel

Wang, Y.; Olieslagers, S.; Johnsen, A. B.; Mastitskaya, S.; Ni, H.; Zhang, Y.; Black, N.; Anderson, C.; Cox, C.; Bucchi, A.; Wegner, S.; Bano-Otalora, B.; Petit, C.; Gill, E.; Logantha, S. J.; Ashton, N.; Hart, G.; Zhang, H.; Cartwright, E.; Wisloff, U.; Da Costa Martins, P.; DiFrancesco, D.; Dobrzynski, H.; Piggins, H. D.; Boyett, M.; DSouza, A.

10.1101/684209 — physiology — Posted on 2019-06-27

356 Cue-reactivity and approach bias to social alcohol cues and their association with drinking in a social setting in young adults

Groefsema, M. M.; Mies, G. W.; Cousijn, J.; Engels, R. C. M. E.; Sescousse, G.; Luijten, M.

10.1101/682898 — neuroscience — Posted on 2019-06-27

357 Towards a Better Estimation of Functional Brain Network for Mild Cognitive Impairment Identification: A Transfer Learning View

Li, W.; Zhang, L.; Qiao, L.; Shen, D.

10.1101/684779 — neuroscience — Posted on 2019-06-27

358 Retrograde mitochondrial transport is essential for mitochondrial homeostasis in neurons

Mandal, A.; Pinter, K.; Mosqueda, N.; Beirl, A.; Lomash, R. M.; Won, S.; Kindt, K. S.; Drerup, C. M.

10.1101/683243 — neuroscience — Posted on 2019-06-27

359 Prism adaptation modulates connectivity of the intraparietal sulcus with multiple brain networks

Schintu, S.; Freedberg, M.; Gotts, S. J.; Cunningham, C. A.; Alam, Z. M.; Shomstein, S.; Wassermann, E.

10.1101/683078 — neuroscience — Posted on 2019-06-27

360 Tel1 activation by the MRX complex is sufficient for telomere length regulation but not for the DNA damage response in S. cerevisiae

Keener, R.; Connelly, C. J.; Greider, C. W.

10.1101/684522 — molecular biology — Posted on 2019-06-27

361 Unprecedented biomass and fatty acid production by the newly discovered cyanobacterium Synechococcus sp. PCC 11901

Włodarczyk, A.; Toscano Selao, T.; Norling, B.; Nixon, P. J.

10.1101/684944 — microbiology — Posted on 2019-06-27

362 Exogenous Protein as an Environmental Stimuli of Biofilm Formation in Select Bacterial Strains

Ye, D.; Bapu, L.; Cavalcante, M. M.; Kato, J.; Lauria Sneideman, M.; Scribner, K.; Loch, T.; Marsh, T. L.

10.1101/683979 — microbiology — Posted on 2019-06-27

363 Genome maintenance functions of Trypanosoma brucei DNA Polymerase N include telomere association and a role in antigenic variation

Leal, A. Z.; Schwebs, M.; Briggs, E.; Reis, H.; Lemgruber, L.; Luko, K.; Butter, F.; McCulloch, R.; Janzen, C.

10.1101/682948 — microbiology — Posted on 2019-06-27

364 Influence of neighboring small sequence variants on functional impact prediction

Baasner, J.-S.; Howard, D.; Pucker, B.

10.1101/596718 — genomics — Posted on 2019-06-27

365 Gene silencing by double-stranded RNA from C. elegans neurons reveals functional mosaicism of RNA interference

Ravikumar, S.; Devanapally, S.; Jose, A. M.

10.1101/393074 — genetics — Posted on 2019-06-27

366 PTMProphet: Fast and Accurate Mass Modification Localization for the Trans-Proteomic Pipeline

Shteynberg, D. D.; Deutsch, E. W.; Campbell, D. S.; Hoopmann, M. R.; Kusebauch, U.; Lee, D.; Mendoza, L.; Midha, M.; Sun, Z.; Whetton, A. D.; Moritz, R. L.

10.1101/679845 — bioinformatics — Posted on 2019-06-27

367 Drug-target binding quantitatively predicts optimal antibiotic dose levels

Clarelli, F.; Palmer, A.; Singh, B.; Storflor, M.; Lauksund, S.; Cohen, T.; Abel, S.; Abel zur Wiesch, P.

10.1101/369975 — biochemistry — Posted on 2019-06-27

368 Genome-wide profiling of an enhancer-associated histone modification reveals the influence of asthma on the epigenome of the airway epithelium.

McErlean, P.; Kelly, A.; Dhariwal, J.; Kirtland, M.; Watson, J.; Ranz Jimenez, I.; Saxena, A.; Cousins, D.; Solari, R.; Edwards, M. R.; Johnston, S. l.; Lavender, P.

10.1101/282889 — genomics — Posted on 2019-06-27

369 Functional specification of CCK+ interneurons by alternative isoforms of Kv4.3 auxiliary subunits

Olah, V. J.; Lukacsovich, D.; Winterer, J.; Lorincz, A.; Nusser, Z.; Foldy, C.; Szabadics, J.

10.1101/683755 — neuroscience — Posted on 2019-06-27

370 Single molecule mechanics resolves the earliest events in force generation by cardiac myosin

Woody, M.; Capitanio, M.; Winkelmann, D.; Ostap, E. M.; Goldman, Y. E.

10.1101/683623 — biochemistry — Posted on 2019-06-27

371 Dissociation of solid tumour tissues with cold active protease for single-cell RNA-seq minimizes conserved collagenase associated stress responses

O'Flanagan, C. H.; Campbell, K. R.; Zhang, A. W.; Kabeer, F.; Lim, J. L.; Biele, J.; Eirew, P.; Lai, D.; McPherson, A.; Kong, E.; Bates, C.; Borkowski, K.; Wiens, M.; Hopkins, J.; Hewitson, B.; Ceglia, N.; Moore, R.; Mungall, A. J.; McAlpine, J. N.; The CRUK IMAXT Grand Challenge Team, ; Shah, S. P.; Aparicio, S.

10.1101/683227 — genomics — Posted on 2019-06-27

372 Generating high-quality libraries for DIA-MS with empirically-corrected peptide predictions

Searle, B. C.; Swearingen, K. E.; Barnes, C. A.; Schmidt, T.; Gessulat, S.; Kuster, B.; Wilhelm, M.

10.1101/682245 — systems biology — Posted on 2019-06-27

373 Corticotrophin-Releasing Hormone neurons of Barrington’s nucleus: Probabilistic, spinally-gated control of bladder pressure and micturition

Ito, H.; Sales, A. C.; Fry, C. H.; Kanai, A. J.; Drake, M. J.; Pickering, A. E.

10.1101/683334 — neuroscience — Posted on 2019-06-27

374 PRC2 activates interferon-stimulated genes indirectly by repressing miRNAs in glioblastoma

Shivram, H.; Le, S. V.; Iyer, V. R.

10.1101/681858 — molecular biology — Posted on 2019-06-27

375 Prevalence of antimicrobial resistance genes and integrons in commensal Gram-negative bacteria in a college community

Rubin, J.; Mussio, K.; Xu, Y.; Suh, J.; W. Riley, L.

10.1101/683524 — microbiology — Posted on 2019-06-27

376 Behavioral training of marmosets and electrophysiological recording from the cerebellum

Sedaghat-Nejad, E.; Herzfeld, D. J.; Hage, P.; Karbasi, K.; Palin, T.; Wang, X.; Shadmehr, R.

10.1101/683706 — neuroscience — Posted on 2019-06-27

377 Vesicular stomatitis virus transcription is inhibited by TRIM69 in the interferon-induced antiviral state

Kueck, T.; Bloyet, L.-M.; Cassella, E.; Zang, T.; Schmidt, F.; Brusic, V.; Tekes, G.; Pornillos, O.; Whelan, S.; Bieniasz, P. D.

10.1101/683292 — microbiology — Posted on 2019-06-27

378 Identification and characterization of cis-regulatory elements for photoreceptor type-specific transcription in zebrafish

Fang, W.; Wen, Y.; Wei, X.

10.1101/683284 — developmental biology — Posted on 2019-06-27

379 Chemogenetic control of nanobodies

Farrants, H.; Tarnawski, M.; Müller, T. G.; Otsuka, S.; Hiblot, J.; Koch, B.; Kueblbeck, M.; Kräusslich, H.-G.; Ellenberg, J.; Johnsson, K.

10.1101/683557 — synthetic biology — Posted on 2019-06-27

380 TREM-1 activation is a key regulator in driving severe pathogenesis of enterovirus 71 infection

Amrun, S. N.; Tan, J. J.; Rickett, N. Y.; Cox, J. A.; Lee, B.; Griffiths, M. J.; Solomon, T.; Perera, D.; Ooi, M. H.; Hiscox, J. A.; Ng, L. F.

10.1101/682914 — immunology — Posted on 2019-06-27

381 The USP28-{triangleup}Np63 axis is a vulnerability of squamous tumours

Prieto-Garcia, C.; Hartmann, O.; Reissland, M.; Braun, F.; Fischer, T.; Walz, S.; Fischer, A.; Calzado, M.; Orian, A.; Rosenfeldt, M.; Eilers, M.; Diefenbacher, M. E.

10.1101/683508 — cancer biology — Posted on 2019-06-27

382 TSC2-deficiency potentiates a catabolic signaling switch that differentiates neural and neural crest lineage development and progressive disease manifestations

Delaney, S. P.; Julian, L. M.; Pietrobon, A.; Yockell-Lelievre, J.; Dore, C.; Wang, T. T.; Doyon, V. C.; Raymond, A.; Patten, D. A.; Harper, M.-E.; Sun, H.; Stanford, W. L.

10.1101/683359 — cancer biology — Posted on 2019-06-27

383 Cerebral dopamine neurotrophic factor (CDNF) reduces myocardial ischemia/reperfusion injuries by the activation of PI3K-AKT via KDEL-receptor binding

Maciel, L.; De Oliveira, D.; Mesquita, F.; Souza, H. A. d. S.; Oliveira, L.; Palhano, F.; de Carvalho, A. C. C.; Nascimento, J.; Foguel, D.

10.1101/683110 — physiology — Posted on 2019-06-27

384 A Consensus Framework Unifies Multi-Drug Synergy Metrics

Wooten, D. J.; Meyer, C. T.; Quaranta, V.; Lopez, C. F.

10.1101/683433 — pharmacology and toxicology — Posted on 2019-06-27

385 Computational analysis of transcriptome signature repurposes low dose trifluoperazine for the treatment of fragile X syndrome in mouse model

Ding, Q.; Sethna, F.; Wu, X.-T.; Miao, Z.; Chen, P.; Zhang, Y.; Xiao, H.; Feng, W.; Feng, Y.; Li, X.; Wang, H.

10.1101/683169 — neuroscience — Posted on 2019-06-27

386 The mitogenome of Norway spruce and a reappraisal of mitochondrial recombination in plants

Sullivan, A. R.; Eldfjell, Y.; Schiffthaler, B.; Delhomme, N.; Asp, T.; Hebelstrup, K. H.; Keech, O.; Öberg, L.; Moller, I. M.; Arvestad, L.; Street, N. R.; Wang, X.-R.

10.1101/682732 — genomics — Posted on 2019-06-27

387 Inferring generation-interval distributions from contact-tracing data

Park, S. W.; Champredon, D.; Dushoff, J.

10.1101/683326 — ecology — Posted on 2019-06-27

388 Dual Role of Cell-Cell Adhesion In Tumor Suppression and Proliferation

Malmi-Kakkada, A. N.; Li, X.; Sinha, S.; Thirumalai, D.

10.1101/683250 — cancer biology — Posted on 2019-06-27

389 Trial by phylogenetics - Evaluating the Multi-Species Coalescent for evolutionary inference on taxa with high levels of paralogy (Gonyaulacales, Dinophyceae).

Kretzschmar, A. L.; Verma, A.; murray, s.; Kahlke, T.; Fourment, M.; Darling, A.

10.1101/683383 — evolutionary biology — Posted on 2019-06-27

390 Cardiac myocytes respond differentially and synergistically to matrix stiffness and topography

Wan, W.; Bjorkman, K. K.; Choi, E. S.; Panepento, A. L.; Anseth, K. S.; Leinwand, L. A.

10.1101/682930 — cell biology — Posted on 2019-06-27

391 Control of Intracellular Molecular Networks Using Algebraic Methods

Sordo Vieira, L.; Laubenbacher, R. C.; Murrugarra, D.

10.1101/682989 — systems biology — Posted on 2019-06-27

392 An individual interneuron participates in many kinds of inhibition and spans much of the mouse visual thalamus

Morgan, J. L.; Lichtman, J. W.

10.1101/683276 — neuroscience — Posted on 2019-06-27

393 Neural Mechanisms of Economic Choices in Mice

Kuwabara, M.; Holy, T. E.; Padoa-Schioppa, C.

10.1101/682740 — neuroscience — Posted on 2019-06-27

394 Diversity in natural transformation frequencies and regulation across Vibrio species

Simpson, C. A.; Podicheti, R.; Rusch, D. B.; Dalia, A. B.; van Kessel, J.

10.1101/683029 — microbiology — Posted on 2019-06-27

395 Quantifying within-host evolution of H5N1 influenza in humans and poultry in Cambodia

Moncla, L. H.; Bedford, T.; Dussart, P.; Horm, S. V.; Rith, S.; Buchy, P.; Karlsson, E. A.; Li, L.; Liu, Y.; Zhu, H.; Guan, Y.; Friedrich, T. C.; Horwood, P. F.

10.1101/683151 — microbiology — Posted on 2019-06-27

396 The effects of losing sex on the molecular evolution of plant defense

Carmona, D.; Hollister, J. D.; Greiner, S.; Wright, S.; Ness, R.; Johnson, M.

10.1101/683219 — evolutionary biology — Posted on 2019-06-27

397 A hydrogen dependent geochemical analogue of primordial carbon and energy metabolism

Preiner, M.; Igarashi, K.; Muchowska, K. B.; Yu, M.; Varma, S. J.; Kleinermanns, K.; Nobu, M. K.; Kamagata, Y.; Tüysüz, H.; Moran, J.; Martin, W. F.

10.1101/682955 — evolutionary biology — Posted on 2019-06-27

398 Influenza Viruses in Mice: Deep Sequencing Analysis of Serial Passage and Effects of Sialic Acid Structural Variation

Wasik, B. R.; Voorhees, I. E. H.; Barnard, K. N.; Lawrence, B. K.; Weichert, W.; Hood, G.; Nogales, A.; Martinez-Sobrido, L.; Holmes, E. C.; Parrish, C. R.

10.1101/683516 — microbiology — Posted on 2019-06-27

399 Determining the scale at which variation in WUE traits changes population yields

McGale, E.; de Aguiar Valim, H.; Mittal, D.; Morales Jimenez, J.; Halitschke, R.; Schuman, M. C.; Baldwin, I. T.

10.1101/682674 — ecology — Posted on 2019-06-27

400 The relationship between subjective sleep quality and cognitive performance in healthy young adults: Evidence from three empirical studies

Zavecz, Z.; Nagy, T.; Galko, A.; Nemeth, D.; Janacsek, K.

10.1101/328369 — neuroscience — Posted on 2019-06-27

401 Characterizing of novel magnetotactic bacteria using a combination of magnetic column separation (MTB-CoSe) and mamK-specific primers

Koziaeva, V. V.; Alekseeva, L. M.; Uzun, M. M.; Leao, P.; Sukhacheva, M. V.; Patutina, E. O.; Kolganova, T.; Grouzdev, D. S.

10.1101/682252 — microbiology — Posted on 2019-06-27

402 The Lid/KDM5 histone demethylase complex activates a critical effector of the oocyte-to-zygote transition

Torres-Campana, D.; Kimura, S.; Orsi, G. A.; Horard, B.; Benoit, G.; Loppin, B.

10.1101/682468 — genetics — Posted on 2019-06-27

403 Nuclear factor I/B increases in prostate cancer to support androgen receptor activation

Nanda, J. S.; Awadallah, W. N.; Kohrt, S. E.; Popovics, P.; Cates, J. M. M.; Mirosevich, J.; Clark, P. E.; Giannico, G. A.; Grabowska, M. M.

10.1101/684472 — cancer biology — Posted on 2019-06-27

404 pHluo_M153R-CD63, a bright, versatile live cell reporter of exosome secretion and uptake, reveals pathfinding behavior of migrating cells

Sung, B. H.; von Lersner, A.; Guerrero, J.; Inman, D.; Pelletier, R. J.; Zijlstra, A.; Ponik, S. M.; Weaver, A. M.

10.1101/577346 — cell biology — Posted on 2019-06-26

405 Valid post-clustering differential analysis for single-cell RNA-Seq

Zhang, J. M.; Kamath, G. M.; Tse, D. N.

10.1101/463265 — bioinformatics — Posted on 2019-06-26

406 Cohesin removal reprograms gene expression upon mitotic entry

Perea-Resa, C.; Bury, L.; Cheeseman, I.; Blower, M. D.

10.1101/678003 — cell biology — Posted on 2019-06-26

407 Isolation of adipose tissue derived regenerative cells from human subcutaneous tissue with or without the use of an enzymatic reagent

Winnier, G. E.; Valenzuela, N.; Peters-Hall, J.; Kellner, J.; Alt, C.; Alt, E. U.

10.1101/485318 — bioengineering — Posted on 2019-06-26

408 Episodic memory encoding by a place cell sub-population

Ormond, J.; Serka, S. A.; Johansen, J. P.

10.1101/682831 — neuroscience — Posted on 2019-06-26

409 Expression of normal levels of the Pumilio domain protein PUF3 is required for optimal growth of Trypanosoma brucei

Marucha, K. K.; Clayton, C.

10.1101/682542 — molecular biology — Posted on 2019-06-26

410 Investigating unexplained genetic variation and its expression in the arbuscular mycorrhizal fungus Rhizophagus irregularis

Masclaux, F. G. G.; Wyss, T.; Pagni, M.; Rosikiewicz, P.; Sanders, I. R.

10.1101/682385 — microbiology — Posted on 2019-06-26

411 Antibody Complementarity Determining Region Design Using High-Capacity Machine Learning

Liu, G.; Zeng, H.; Mueller, J.; Carter, B.; Wang, Z.; Schilz, J.; Horny, G.; Birnbaum, M. E.; Ewert, S.; Gifford, D. K.

10.1101/682880 — immunology — Posted on 2019-06-26

412 Variable Mutations at the p53-R273 Oncogeic Hotspot Position Leads to Altered Properties

Garg, A.; Hazra, J. P.; Sannigrahi, M.; Rakshit, S.; Sinha, S.

10.1101/684407 — biophysics — Posted on 2019-06-26

413 Validating paired-end read alignments in sequence graphs

Jain, C.; Zhang, H.; Dilthey, A.; Aluru, S.

10.1101/682799 — bioinformatics — Posted on 2019-06-26

414 Experimental investigation of temperature-dependent denaturation behavior of type-I Collagen

Derman, I. D.; Senel, E. C.; Ferhanoglu, O.; Cilesiz, I.

10.1101/682401 — bioengineering — Posted on 2019-06-26

415 MOU-EC: model-based whole-brain effective connectivity to extract biomarkers for brain dynamics from fMRI data and study distributed cognition

Gilson, M.; Zamora-Lopez, G.; Pallares, V.; Adhikari, M. H.; Senden, M.; Tauste Campo, A.; Mantini, D.; Corbetta, M.; Deco, G.; Insabato, A.

10.1101/531830 — neuroscience — Posted on 2019-06-26

416 A novel systems biology approach to evaluate mouse models of late-onset Alzheimer’s disease

Preuss, C.; Pandey, R.; Piazza, E.; Fine, A.; Uyar, A.; Perumal, T.; Garceau, D.; Kotredes, K. P.; Williams, H.; Mangravite, L. M.; Lamb, B. T.; Oblak, A. L.; Howell, G. R.; Sasner, M.; Logsdon, B. A.; Carter, G. W.

10.1101/682856 — neuroscience — Posted on 2019-06-26

417 Mendelian randomization accounting for horizontal and correlated pleiotropic effects using genome-wide summary statistics.

Morrison, J.; Knoblauch, N.; Marcus, J.; Stephens, M.; He, X.

10.1101/682237 — genetics — Posted on 2019-06-26

418 Optimal foraging of benthic diatoms evolving novel movement behaviours

Hu, W.-S.; Huang, M.-J.; Zhang, H.-P.; Zhang, F.; Vyverman, W.; Liu, Q.-X.

10.1101/682153 — ecology — Posted on 2019-06-26

419 Edgy conservation: Canadian at-risk plants are overwhelmingly range-edge populations and under-studied

Klemet-N'Guessan, S.; Jackiw, R.; Eckert, C. G.; Hargreaves, A.

10.1101/682823 — ecology — Posted on 2019-06-26

420 Differential Metabolic Sensitivity of Insulin-like-response- and mTORC1-Dependent Overgrowth in Drosophila Fat Cells

Devilliers, M.; Garrido, D.; Poidevin, M.; Rubin, T.; Le Rouzic, A.; Montagne, J.

10.1101/606699 — cell biology — Posted on 2019-06-26

421 The long non-coding RNA GHSROS reprograms prostate cancer cell lines toward a more aggressive phenotype

Thomas, P. B.; Jeffery, P. L.; Gahete, M. D.; Whiteside, E. J.; Walpole, C.; Maugham, M. L.; Jovanovic, L.; Gunter, J. H.; Williams, E. D.; Nelson, C. C.; Herington, A. C.; Luque, R. M.; Veedu, R. N.; Chopin, L. K.; Seim, I.

10.1101/682203 — cancer biology — Posted on 2019-06-26

422 Biased Signaling: Distinct Ligand-directed Plasma Membrane Signalsomes Using a Common RGS/G Protein Core

Ross-Elliott, T.; Watkins, J.; Shan, X.; Lou, F.; Dreyer, B.; Tunc-Ozdemir, M.; Jia, H.; Yang, J.; Wu, L.; Trusov, Y.; Krysan, P.; Jones, A.

10.1101/666578 — plant biology — Posted on 2019-06-26

423 A \"twisted\" visual field map in the primate cortex predicted by topographic continuity

Yu, H.-H.; Rowley, D. P.; Zavitz, E.; Price, N. S. C.; Rosa, M.

10.1101/682187 — neuroscience — Posted on 2019-06-26

424 Asymmetric Cell Growth and Nucleoid Displacement in Escherichia coli

Gangan, M. S.; Athale, C. A.

10.1101/682435 — microbiology — Posted on 2019-06-26

425 Integrative analysis of proteome and transcriptome dynamics during Bacillus subtilis spore revival

Swarge, B.; Jonker, M.; Abhyankar, W.; Hoefsloot, H.; de Koster, C.; Brul, S.; de Koning, L.

10.1101/682872 — microbiology — Posted on 2019-06-26

426 Multi-tissue probabilistic fine-mapping of transcriptome-wide association study identifies cis-regulated genes for miserableness

Liao, C.; Vuokila, V.; Dionne-Laporte, A.; Spiegelman, D.; Dion, P. A.; Rouleau, G. A.

10.1101/682633 — genetics — Posted on 2019-06-26

427 Phosphorylated Lamin A targets active enhancers and is associated with abnormal transcriptional activation in progeria

Ikegami, K.; Secchia, S.; Lieb, J. D.; Moskowitz, I. P.

10.1101/682260 — genetics — Posted on 2019-06-26

428 Molecular Determinants of μ-Conotoxin KIIIA interaction with the Voltage-Gated Sodium Channel Nav1.7

Kimball, I. H.; Nguyen, P. T.; Olivera, B. M.; Sack, J. T.; Yarov-Yarovoy, V.

10.1101/654889 — biophysics — Posted on 2019-06-26

429 A computational mechanism for seeing dynamic deformation

Kawabe, T.; Sawayama, M.

10.1101/682336 — neuroscience — Posted on 2019-06-26

430 Rare protein-altering variants in ANGPTL7 lower intraocular pressure and protect against glaucoma

Tanigawa, Y.; Wainberg, M.; Karjalainen, J.; Kiiskinen, T.; Lemmelä, S.; Turunen, J. A.; Palotie, A.; FinnGen, ; Daly, M.; Rivas, M. A.

10.1101/677443 — genetics — Posted on 2019-06-26

431 Exploring the Relationship between Geomagnetic Activity and Human Heart Rate Variability

Mattoni, M.; Ahn, S.; Frohlich, C.; Frohlich, F.

10.1101/684035 — physiology — Posted on 2019-06-26

432 Motor cortex can directly drive the globus pallidal neurons in a projection neuron type dependent manner in rat

Karube, F.; Takahashi, S.; Kobayashi, K.; Fujiyama, F.

10.1101/677377 — neuroscience — Posted on 2019-06-26

433 Astrocytes Contribute to Remote Memory Formation by Modulating Hippocampal-Cortical Communication During Learning

Kol, A.; Adamsky, A.; Groysman, M.; Kreisel, T.; London, M.; Goshen, I.

10.1101/682344 — neuroscience — Posted on 2019-06-26

434 Broadly inhibiting anti-neuraminidase monoclonal antibodies induced by trivalent influenza vaccine and H7N9 infection in humans

Rijal, P.; Wang, B. B.; Tan, T. K.; Schimanski, L.; Janesch, P.; Dong, T.; McCauley, J. M.; Daniels, R. S.; Townsend, A.; Huang, K.-Y. A.

10.1101/682450 — immunology — Posted on 2019-06-26

435 Cell-type specific analysis of heterogeneous methylation signal using a Bayesian model-based approach

Kennedy, D. W.; White, N. M.; Benton, M. C.; Lea, R. A.; Mengersen, K.

10.1101/682070 — bioinformatics — Posted on 2019-06-26

436 A short review of machine learning methods for classifying the outcome of Gestational Diabetes

Banerji, S.

10.1101/643833 — bioinformatics — Posted on 2019-06-26

437 A novel rationale for targeting FXI: Insights from the hemostatic miRNA targetome for emerging anticoagulant strategies

Nourse, J.; Danckwardt, S.

10.1101/501676 — systems biology — Posted on 2019-06-26

438 Neural correlates of exceptional memory ability in SuperAgers: A multimodal approach using FDG-PET, PIB-PET, and MRI

Borelli, W. V.; Leal-Conceiao, E.; Andrade, M. A.; Esper, N. B.; Feltes, P. K.; Soder, R. B.; Matushita, C. S.; Hartmann, L. M.; Radaelli, G.; Schilling, L. P.; Moriguchi-Jeckel, C.; Marques da Silva, A. M.; Portuguez, M. W.; Franco, A. R.; da Costa, J. C.

10.1101/666438 — neuroscience — Posted on 2019-06-26

439 Non-spatial features reduce the reliance on sustained spatial auditory attention

Bonacci, L. M.; Bressler, S.; Shinn-Cunningham, B. G.

10.1101/682088 — neuroscience — Posted on 2019-06-26

440 Quantitation of vector uptake reveals non-Poissonian transfection dynamics in Plasmodium falciparum

Carrasquilla, M.; Sanderson, T.; Montadon, R.; Rayner, J.; Pance, A.; Lee, M.

10.1101/681981 — microbiology — Posted on 2019-06-26

441 The common neoantigens in colorectal cancer are predicted and validated to be presented or immunogenic

Liang, Z.; Qin, L.; Chen, L.; Li, W.; Chen, C.; Huang, Y.; Zhang, L.; Liu, S.; Qiu, S.; Ge, Y.; Peng, W.; Lin, X.; Dong, X.; Zhang, X.; Li, B.

10.1101/682617 — immunology — Posted on 2019-06-26

442 The evolutionary dynamics of Oropouche Virus (OROV) in South America

Gutierrez, B.; Wise, E.; Pullan, S.; Logue, C.; Bowden, T. A. A.; Trueba, G.; Nunes, M.; Faria, N. R.; Pybus, O. G.

10.1101/682559 — evolutionary biology — Posted on 2019-06-26

443 Combining multiple data sources in species distribution models while accounting for spatial dependence and overfitting with combined penalised likelihood maximisation

Renner, I.; Louvrier, J.; Gimenez, O.

10.1101/615583 — ecology — Posted on 2019-06-26

444 Neogenin-1 distinguishes between myeloid-biased and balanced Hoxb5+ mouse long-term hematopoietic stem cells

Gulati, G. S.; Zukowska, M.; Noh, J.; Zhang, A.; Sinha, R.; George, B.; Wesche, D.; Weissman, I. L.; Szade, K.

10.1101/608398 — cell biology — Posted on 2019-06-26

445 Graph analytics for phenome-genome associations inference

Cirillo, D.; Garcia-Gasulla, D.; Cortes, U.; Valencia, A.

10.1101/682229 — bioinformatics — Posted on 2019-06-26

446 ASFVdb: An integrative resource for genomics and proteomics analyses of African swine fever

Zhu, Z.; Meng, G.

10.1101/670109 — bioinformatics — Posted on 2019-06-26

447 Simulating bout-and-pause patterns with reinforcement learning

Yamada, K.; Kanemura, A.

10.1101/632745 — animal behavior and cognition — Posted on 2019-06-26

448 Vascularized human cortical organoids model cortical development in vivo

Shi, Y.; Sun, L.; Liu, J.; Zhong, S.; Wang, M.; Li, R.; Li, P.; Guo, L.; Fang, A.; Chen, R.; Ge, W.-P.; Wu, Q.; Wang, X.

10.1101/682104 — neuroscience — Posted on 2019-06-26

449 High resolution atlasing of the venous brain vasculature from 7T quantitative susceptibility

Huck, J.; Wanner, Y.; Fan, A. P.; Schmidt, A.-T.; Grahl, S.; Schneider, U.; Villringer, A.; Steele, C. J.; Tardif, C. L.; Bazin, P.-L.; Gauthier, C. J.

10.1101/444349 — neuroscience — Posted on 2019-06-26

450 The covariance perceptron: A new paradigm for classification and processing of time series in recurrent neural networks

Gilson, M.; Dahmen, D.; Moreno-Bote, R.; Insabato, A.; Helias, M.

10.1101/562546 — neuroscience — Posted on 2019-06-26

451 Resting state functional connectivity in early post-anesthesia recovery is characterized by globally reduced anticorrelations

Nir, T.; Jacob, Y.; Huang, K.-H.; Schwartz, A. E.; Brallier, J. W.; Ahn, H.; Kundu, P.; Tang, C. Y.; Delman, B. N.; McCormick, P. J.; Sano, M.; Deiner, S. G.; Baxter, M. G.; Mincer, J. S.

10.1101/669457 — neuroscience — Posted on 2019-06-26

452 Exploiting codon usage identifies RpS21 as an in vivo signal strength-dependent Ras/MAPK regulator

Sawyer, J. K.; Kabiri, Z.; Montague, R. A.; Paramore, S. V.; Cohen, E.; Zaribafzadeh, H.; Counter, C. M.; Fox, D. T.

10.1101/650630 — genetics — Posted on 2019-06-26

453 An atlas of transcription factors expressed in the Drosophila melanogaster pupal terminalia

Vincent, B. J.; Rice, G. R.; Wong, G. M.; Glassford, W. J.; Downs, K. I.; Shastay, J. L.; Charles-Obi, K.; Natarajan, M.; Gogol, M. M.; Zeitlinger, J.; Rebeiz, M.

10.1101/677260 — genetics — Posted on 2019-06-26

454 Inferring wildlife poaching in Southeast Asia with multispecies dynamic site-occupancy models

Marescot, L.; Lyet, A.; Singh, R.; Carter, N.; Gimenez, O.

10.1101/520114 — ecology — Posted on 2019-06-26

455 doepipeline: a systematic approach to optimizing multi-level and multi-step data processing workflows

Svensson, D.; Sjögren, R.; Sundell, D.; Sjödin, A.; Trygg, J.

10.1101/504050 — bioinformatics — Posted on 2019-06-26

456 Integrating Multiplex SiMPull and Computational Modeling to Evaluate Combinatorial Aspects of EGFR Signaling

Salazar-Cavazos, E.; Nitta, C. F.; Mitra, E. D.; Wilson, B. S.; Lidke, K. A.; Hlavacek, W. S.; Lidke, D. S.

10.1101/227512 — systems biology — Posted on 2019-06-26

457 Genome-Wide Polygenic Risk Scores and prediction of Gestational Diabetes in South Asian Women

Lamri, A.; Mao, S.; Desai, D.; Gupta, M.; Pare, G.; Anand, S. S.

10.1101/574616 — genomics — Posted on 2019-06-26

458 High transcriptional error rates vary as a function of gene expression level

Meer, K. M.; Nelson, P. G.; Xiong, K.; Masel, J.

10.1101/554329 — evolutionary biology — Posted on 2019-06-26

459 Making Pastoralists Count: Geospatial Methods for the Health Surveillance of Nomadic Populations

Wild, H.; Glowacki, L.; Maples, S.; Mejia-Guevara, I.; Krystosik, A.; Bonds, M. H.; Hiruy, A.; LaBeaud, A. D.; Barry, M.

10.1101/572685 — epidemiology — Posted on 2019-06-26

460 NNAlign_MA; MHC peptidome deconvolution for accurate MHC binding motif characterization and improved T cell epitope predictions

Alvarez, B.; Reynisson, B.; Barra, C.; Buus, S.; Ternette, N.; Connelley, T.; Andreatta, M.; Nielsen, M.

10.1101/550673 — bioinformatics — Posted on 2019-06-26

461 LFMD: a new likelihood-based method to detect low-frequency mutations without molecular tags

Ye, R.; Ruan, J.; Zhuang, X.; Qi, Y.; An, Y.; Xu, J.; Mak, T.; Liu, X.; Zhang, X.; Yang, H.; Xu, X.; Baum, L.; Nie, C.; Sham, P. C.

10.1101/617381 — bioinformatics — Posted on 2019-06-26

462 De novo aging-related megaloneurites: alteration of NADPH diaphorase positivity in the sacral spinal cord of the aged dog

Li, Y.; Jia, Y.; Huo, W.; Wei, Z.; Wen, X.; Tian, Y.; Zhang, W.; Lu, B.; Guo, A.; Du, G.; Tan, H.

10.1101/483990 — neuroscience — Posted on 2019-06-26

463 Ecology drives diversification of reproductive strategies in viviparous fishes

Tobler, M.; Culumber, Z.

10.1101/442830 — evolutionary biology — Posted on 2019-06-26

464 tartan underlies the evolution of male Drosophila genital morphology

Hagen, J. F. D.; Mendes, C. C.; Blogg, A.; Payne, A.; Tanaka, K. M.; Gaspar, P.; Figueras Jimenez, J.; Kittelmann, M.; McGregor, A. P.; Nunes, M. D. S.

10.1101/462259 — evolutionary biology — Posted on 2019-06-26

465 Evolutionary dynamics of sex chromosomes of paleognathous birds

Xu, L.; Sin, S. Y. W.; Grayson, P.; Edwards, S. V.; Sackton, T. B.

10.1101/295089 — evolutionary biology — Posted on 2019-06-26

466 Jag1 modulates an oscillatory Dll1-Notch-Hes1 signaling module to coordinate growth and fate of pancreatic progenitors

Seymour, P. A.; Collin, C. A.; Egeskov-Madsen, A. l. R.; Jorgensen, M. C.; Shimojo, H.; Imayoshi, I.; Honnens de Lichtenberg, K. H.; Kopan, R.; Kageyama, R.; Serup, P.

10.1101/336529 — developmental biology — Posted on 2019-06-26

467 Dietary fatty acids promote sleep through a taste-independent mechanism

Sah Pamboro, E. L.; Brown, E. B.; Keene, A. C.

10.1101/681635 — neuroscience — Posted on 2019-06-26

468 Weak neural signatures of spatial selective auditory attention in hearing-impaired listeners

Bonacci, L. M.; Dai, L.; Shinn-Cunningham, B. G.

10.1101/675595 — neuroscience — Posted on 2019-06-26

469 Syngap Splice Variants Display Heterogeneous Spatio-Temporal Expression And Subcellular Distribution In The Developing Mammalian Brain

Gou, G.; Roca-Fernandez, A.; Kilinc, M.; Serrano, E.; Reig-Viader, R.; Araki, Y.; Huganir, R. L.; de Quintana-Schmidt, C.; Rumbaugh, G.; Bayes, A.

10.1101/681148 — neuroscience — Posted on 2019-06-26

470 The future of peptide-centric Data-Independent Acquisition is predicted

Van Puyvelde, B.; Willems, S.; Gabriels, R.; Daled, S.; De Clerck, L.; Staes, A.; Impens, F.; Deforce, D.; Martens, L.; Degroeve, S.; Dhaenens, M.

10.1101/681429 — bioinformatics — Posted on 2019-06-26

471 Reproducible Tract Profiles (RTP): from diffusion MRI acquisition to publication

Lerma-Usabiaga, G.; Perry, M.; Wandell, B. A.

10.1101/680173 — neuroscience — Posted on 2019-06-26

472 Generation of Recombinant Rotavirus Expressing NSP3-UnaG Fusion Protein by a Simplified Reverse Genetics System

Philip, A.; Eaton, H.; Shmulevitz, M.; Patton, J.

10.1101/678292 — microbiology — Posted on 2019-06-26

473 Excess calorie intake early in life increases susceptibility to colitis in the adult

Alnabhani, Z.; Dulauroy, S.; Lecuyer, E.; Polomack, B.; Berard, M.; Eberl, G.

10.1101/681759 — immunology — Posted on 2019-06-26

474 Arm swapping autograft shows functional equivalency of five arms in sea stars

Wakita, D.; Aonuma, H.; Tochinai, S.

10.1101/676254 — developmental biology — Posted on 2019-06-26

475 binomialRF: Scalable Feature Selection and Screening for Random Forests to Identify Biomarkers and Their Interactions

Rachid Zaim, S.; Kenost, C.; Lussier, Y. A.; Zhang, H. H.

10.1101/681973 — bioinformatics — Posted on 2019-06-26

476 Coevolutive, Evolutive and Stochastic Information in Protein-Protein Interactions

Andrade, M.; Pontes, C. F. T.; Treptow, W.

10.1101/683128 — biophysics — Posted on 2019-06-26

477 Calcium buffers and L-type calcium channels as modulators of cardiac subcellular alternans

Lai, Y. M.; Coombes, S.; Thul, R.

10.1101/683011 — biophysics — Posted on 2019-06-26

478 Long non-coding RNA expression levels modulate cell-type specific splicing patterns by altering their interaction landscape with RNA-binding proteins

Porto, F. W.; Daulatabad, S. V.; Janga, S. C.

10.1101/683193 — bioinformatics — Posted on 2019-06-26

479 PROPERTIES OF A MULTIDIMENSIONAL LANDSCAPE MODEL FOR DETERMINING CELLULAR NETWORK THERMODYNAMICS

Hubbard, J. B.; Halter, M.; Plant, A. L.

10.1101/682690 — systems biology — Posted on 2019-06-26

480 Serial electron diffraction for high-throughput protein nano-crystallography

Bücker, R.; Hogan-Lamarre, P.; Mehrabi, P.; Schulz, E. C.; Bultema, L. A.; Gevorkov, Y.; Brehm, W.; Yefanov, O.; Oberthür, D.; Kassier, G. H.; Miller, R. J. D.

10.1101/682575 — molecular biology — Posted on 2019-06-26

481 Compartmentalized glycogenolysis regulates lung cancer transcription

Sun, R. C.; Gentry, M. S.; Dukhande, V.; Brainson-Fillmore, C.; Young, L. E.; Emanuelle, S.; Zhou, Z.

10.1101/681833 — cancer biology — Posted on 2019-06-26

482 Reorganisation of complex ciliary flows around regenerating Stentor coeruleus

Wan, K. Y.; Hürlimann, S. K.; Fenix, A. M.; McGillivary, R. M.; Makushok, T.; Burns, E.; Sheung, J. Y.; Marshall, W. F.

10.1101/681908 — biophysics — Posted on 2019-06-26

483 DNA-loop extruding condensin complexes can traverse one another

Kim, E.; Kerssemakers, J. W. J.; Shaltiel, I. A.; Haering, C. H.; Dekker, C.

10.1101/682864 — biophysics — Posted on 2019-06-26

484 A solvable model of entrainment ranges for the circadian rhythm under light/dark cycles

Takakura, R.; Ichikawa, M.; Oyama, T.

10.1101/683615 — biophysics — Posted on 2019-06-26

485 Nitric oxide acts as a cotransmitter in a subset of dopaminergic neurons to diversify memory dynamics

Aso, Y.; Ray, R.; Long, X.; Cichewicz, K.; Ngo, T.-T. B.; Christoforou, C.; Sharp, B.; Lemire, A. L.; Hirsh, J.; Litwin Kumar, A.; Rubin, G. M.

10.1101/682815 — neuroscience — Posted on 2019-06-26

486 Novel Bayesian Networks for Genomic Prediction of Developmental Traits in Biomass Sorghum

Gore, M. A.; dos Santos, J. P. R.; Fernandes, S. B.; Lozano, R.; Brown, P. J.; Buckler, E.; Garcia, A. A. F.

10.1101/677179 — genetics — Posted on 2019-06-26

487 Clinical diagnosis of single-gene disorders and chromosomal abnormalities based on BGISEQ-500 platform

Liu, Y.; Mao, L.; Wei, X.; Man, J.; Zhang, W.; Wang, L.; Li, L.; Sun, Y.; Li, W.; Zhai, T.; Guo, X.; Du, L.; Huang, J.; Li, H.; Wan, Y.; Huang, H.

10.1101/675991 — genomics — Posted on 2019-06-26

488 Bioaccumulation of heavy metals in commercially important fish species from the tropical river estuary suggests higher potential child health risk than adults

Ahmed, A. S. S.; Sultana, S.; Habib, A.; Ullah, H.; Musa, N.; Rahman, M. M.; Sarker, M. S. I.

10.1101/681478 — pharmacology and toxicology — Posted on 2019-06-26

489 No evidence for motor recovery-related cortical reorganization after stroke using resting-state fMRI

Branscheidt, M.; Ejaz, N.; Xu, J.; Widmer, M.; Harran, M. D.; Cortes, J. C.; Kitago, T.; Celnik, P.; Hernandez-Castillo, C.; Diedrichsen, J.; Luft, A.; Krakauer, J. W.

10.1101/681320 — neuroscience — Posted on 2019-06-26

490 Nuclear lipidome is altered in amyotrophic lateral sclerosis: a preliminary study

Ramirez-Nunez, O.; Jove, M.; Torres, P.; Sol, J.; Fontdevila, L.; Romero-Guevara, R.; Ayala, V.; Rossi, C.; Boada, J.; Povedano, M.; Andres-Benito, P.; Ferrer, I.; Pamplona, R.; Portero-Otin, M.

10.1101/682526 — neuroscience — Posted on 2019-06-26

491 Different Expressions of IL-1 TNF-α P-selectin mRNA by Endothelial Cells after Vein Thrombosis

Zhou, W.; Xu, J.; Liao, K.

10.1101/681387 — microbiology — Posted on 2019-06-26

492 The C. elegans plectin homologue VAB-10 acts as a hemidesmosome mechanosensor

Labouesse, M.; Suman, S. K.; Daday, C.; Ferraro, T.; Vuong-Brender, T. T. K.; Tak, S.; Quintin, S.; Robin, F.; Gräter, F.

10.1101/681072 — developmental biology — Posted on 2019-06-26

493 Protein:Protein Interactions in the Cytoplasmic Membrane Influencing Sugar Transport and Phosphorylation Activities of the E. coli Phosphotransferase System.

Saier, M. H.; Aboulwafa, M.; Zhang, Z.

10.1101/681411 — microbiology — Posted on 2019-06-26

494 From drift to draft: How much do beneficial mutations actually contribute to predictions of Ohta’s slightly deleterious model of molecular evolution?

Lascoux, M.; Glemin, S.; Chen, J.

10.1101/681866 — evolutionary biology — Posted on 2019-06-26

495 A resource for analyzing C. elegans’ gene expression data using transcriptional gene modules and module-weighted annotations

Cary, M. P.; Podshivalova, K.; Kenyon, C.

10.1101/678482 — bioinformatics — Posted on 2019-06-25

496 Serum Amyloid A Proteins Induce Pathogenic TH17 Cells and Promote Inflammatory Disease

Lee, J.-Y.; Hall, J. A.; Kroehling, L.; Wu, L.; Najar, T.; Nguyen, H. H.; Lin, W.-Y.; Yeung, S. T.; Silva, H. M.; Li, D.; Hine, A.; Loke, P.; Hudesman, D.; Martin, J. C.; Kenigsberg, E.; Merad, M.; Khanna, K. M.; Littman, D. R.

10.1101/681346 — immunology — Posted on 2019-06-25

497 Accelerated Biochemical Kinetic Model Fitting via the Asynchronous, Generalized Island Method

Medley, J. K.; Asifullah, S.; Hellerstein, J.; Sauro, H. M.

10.1101/660522 — systems biology — Posted on 2019-06-25

498 Measuring glycolytic flux in single yeast cells with an orthogonal synthetic biosensor

Monteiro, F.; Hubmann, G.; Norder, J.; Hekelaar, J.; Saldida, J.; Litsios, A.; Schmidt, A.; Wijma, H. J.; Heinemann, M.

10.1101/682302 — synthetic biology — Posted on 2019-06-25

499 Plant mixed lineage kinase domain-like proteins limit biotrophic pathogen growth

Mahdi, L.; Huang, M.; Zhang, X.; Nakano, R. T.; Kopp, L. B.; Saur, I. M. L.; Jacob, F.; Kovacova, V.; Lapin, D.; Parker, J. E.; Murphy, J. M.; Hofmann, K.; Schulze-Lefert, P.; Chai, J.; Maekawa, T.

10.1101/681015 — plant biology — Posted on 2019-06-25

500 Effector prediction and characterization in the oomycete pathogen Bremia lactucae reveal host-recognized WY domain proteins that lack the canonical RXLR motif

Wood, K. J.; Nur, M.; Gil, J.; Fletcher, K.; Lakeman, K.; Gothberg, A.; Khuu, T.; Kopetzky, J.; Pandya, A.; Pel, M.; Michelmore, R.

10.1101/679787 — plant biology — Posted on 2019-06-25

501 Single-nuclei transcriptomic analysis of the subthalamic nucleus reveals different Pitx2-positive subpopulations

Papathanou, M.; Björklund, A. K.; Martis-Thiele, M.-M.; Wallen-Mackenzie, A.

10.1101/677724 — neuroscience — Posted on 2019-06-25

502 Texture-Elicited Vibrations Stretch Or Contract Systematically Depending On Scanning Speed

Greenspon, C.; McLellan, K.; Lieber, J. D.; Bensmaia, S. J.

10.1101/680322 — neuroscience — Posted on 2019-06-25

503 Architecture and modular assembly of Sulfolobus S-layers revealed by electron cryo-tomography

Gambelli, L.; Meyer, B.; McLaren, M.; Sanders, K.; Quax, T. E. F.; Gold, V.; Albers, S. V.; Daum, B.

10.1101/677591 — microbiology — Posted on 2019-06-25

504 Cyclophilin A Prevents HIV-1 Restriction in Lymphocytes by Blocking Human TRIM5alpha Binding to the viral Core

Selyutina, A.; Persaud, M.; Bulnes-Ramos, A.; Buffone, C.; Martinez-Lopez, A.; Scoca, V.; Di Nunzio, F.; Hiatt, J.; Krogan, N. J.; Hultquist, J. F.; Diaz-Griffero, F.

10.1101/678037 — microbiology — Posted on 2019-06-25

505 Persistence and plasticity of T follicular memory cells

Künzli, M.; Schreiner, D. P.; Pereboom, T.; Swarnalekha, N.; Lötscher, J.; Ertuna, Y. I.; Roux, J.; Geier, F.; Hess, C.; Taylor, J. T.; King, C. G.

10.1101/677559 — immunology — Posted on 2019-06-25

506 The expanded BXD family of mice: A cohort for experimental systems genetics and precision medicine

Ashbrook, D. G.; Arends, D.; Prins, P.; Mulligan, M. K.; Roy, S.; Williams, E. G.; Lutz, C. M.; Valenzuela, A.; Bohl, C. J.; Ingels, J. F.; McCarty, M.; Centeno, A.; Hager, R.; Auwerx, J.; Sen, S.; Lu, L.; Williams, R. W.

10.1101/672097 — genomics — Posted on 2019-06-25

507 Beach environmental DNA fills gaps in photographic biomonitoring to track spatiotemporal community turnover across 82 phyla

Meyer, R. S.; Schweizer, T. M.; Kwan, W.-Y.; Curd, E. E.; Wall, A.; Pentcheff, D.; Wetzer, R.; Beraut, E.; Young, A.; Johnson, R.; Wayne, R. K.

10.1101/680272 — ecology — Posted on 2019-06-25

508 High-throughput smFRET analysis of freely diffusing nucleic acid molecules and associated proteins

Segal, M.; Ingargiola, A.; Lerner, E.; Chung, S.; White, J. A.; Streets, A. M.; Weiss, S.; Michalet, X.

10.1101/651869 — biophysics — Posted on 2019-06-25

509 NMRdock: Lightweight and Modular NMR Processing

East, K. W.; Leith, A.; Ragavendran, A.; Delaglio, F.; Lisi, G. P.

10.1101/679688 — biophysics — Posted on 2019-06-25

510 Increasing the efficiency of long-read sequencing for hybrid assembly with k-mer-based multiplexing

Dilthey, A.; Meyer, S. A.; Kaasch, A. J.

10.1101/680827 — bioinformatics — Posted on 2019-06-25

511 A resource for analyzing C. elegans’ gene expression data using transcriptional gene modules and module-weighted annotations

Cary, M. P.; Podshivalova, K.; Kenyon, C.

10.1101/678482 — bioinformatics — Posted on 2019-06-25

512 Does Sex Modify an Association of Electrophysiological Substrate with Sudden Cardiac Death? The Atherosclerosis Risk in Communities (ARIC) Study

Howell, S.; German, D.; Bender, A.; Phan, F.; Mukundan, S.; Perez-Alday, E.; Rogovoy, N.; Haq, K.; Yang, K.; Wirth, A.; Jensen, K.; Tereshchenko, L. G.

10.1101/674689 — epidemiology — Posted on 2019-06-25

513 Intramolecular Communication and Allosteric Sites in Enzymes Unraveled by Time-Dependent Linear Response Theory

Huang, B.-C.; Chang-Chein, C.-H.; Yang, L.-W.

10.1101/677617 — biophysics — Posted on 2019-06-25

514 Does nonlinear neural network dynamics explain human confidence in a sequence of perceptual decisions?

Berlemont, K.; Martin, J.-R.; Sackur, J.; Nadal, J.-P.

10.1101/648022 — neuroscience — Posted on 2019-06-25

515 Increasing pulse widths and intensity increase the efficacy of high frequency rTMS in inducing excitatory aftereffects.

Halawa, I.; Reichert, K.; Sommer, M.; Paulus, W.

10.1101/652578 — neuroscience — Posted on 2019-06-25

516 Echo State Network models for nonlinear Granger causality

Duggento, A.; Guerrisi, M.; Toschi, N.

10.1101/651679 — neuroscience — Posted on 2019-06-25

517 SMCHD1 Promotes ATM-dependent DNA Damage Signaling and Repair of Uncapped Telomeres

Lingner, J.; Vancevska, A.; Pfeiffer, V.; Feretzaki, M.; Ahmed, W.

10.1101/669119 — molecular biology — Posted on 2019-06-25

518 CAMIO for deletion analysis of endogenous DNA sequences in multicellular organisms

Chen, H.-M.; Garcia-Marques, J.; Sugino, K.; Wei, D.; Miyares, R. L.; Lee, T.

10.1101/658088 — genomics — Posted on 2019-06-25

519 Can hot temperatures limit disease transmission? A test of mechanisms in a zooplankton-fungus system

Shocket, M.; Magnante, A.; Duffy, M.; Caceres, C.; Hall, S.

10.1101/605477 — ecology — Posted on 2019-06-25

520 Actin chromobody imaging reveals sub-organellar actin dynamics

Schiavon, C. R.; Zhang, T.; Zhao, B.; Andrade, L. R.; Wu, M.; Sung, T.-C.; Dayn, Y.; Feng, J. W.; Quintero, O. A.; Grosse, R.; Manor, U.

10.1101/639278 — cell biology — Posted on 2019-06-25

521 A reduced Gompertz model for predicting tumor age using a population approach

Vaghi, C.; Rodallec, A.; Fanciullino, R.; Ciccolini, J.; Mochel, J.; Mastri, M.; Poignard, C.; Ebos, J. M.; Benzekry, S.

10.1101/670869 — cancer biology — Posted on 2019-06-25

522 Axial variation of deoxyhemoglobin density as a source of BOLD low-frequency time lag structure.

Aso, T.; Urayama, S.; Fukuyama, H.; Murai, T.

10.1101/658377 — biophysics — Posted on 2019-06-25

523 A complex view of GPCR signaling: Multidimensional analysis of extended molecular dynamics simulations reveals the complexity of signal transduction by the histamine H3 membrane receptor

Herrera-Zuniga, L. D.; Moreno-Vargas, L. M.; Correa-Basurto, J.; Prada, D.; Curmi, P.; Arrang, J.-M.; Maroun, R. C.

10.1101/604793 — bioinformatics — Posted on 2019-06-25

524 The Endocrine and Metabolic Response in Male Survivors of Major Trauma

Foster, M. A.; Taylor, A. E.; Hill, N. E.; Bentley, C.; Bishop, J.; Bion, J. F.; Fallowfield, J. L.; Woods, D. R.; Bancos, I.; Midwinter, M.; Lord, J.; Arlt, W.

10.1101/577502 — physiology — Posted on 2019-06-25

525 Sex differences in brain correlates of STEM anxiety

Gonzalez, A. A.; Bottenhorn, K. L.; Bartley, J. E.; Hayes, T.; Riedel, M. C.; Salo, T.; Bravo, E.; Odean, R.; Nazareth, A.; Laird, R. W.; Sutherland, M. T.; Brewe, E.; Pruden, S. M.; Laird, A. R.

10.1101/528075 — neuroscience — Posted on 2019-06-25

526 Probing the polarity of spontaneous GABAergic synaptic transmission in vivo

Dubanet, O.; Ferreira, A.; Frick, A.; Hirase, H.; Beyeler, A.; Leinekugel, X.

10.1101/630608 — neuroscience — Posted on 2019-06-25

527 TGFβ in the obese liver mediates conversion ofNK cells to a less cytotoxic ILC1-like phenotype

Cuff, A. O.; Sillito, F.; Dertschnig, S.; Hall, A.; Luong, T.; Chakraverty, R.; Male, V.

10.1101/576538 — immunology — Posted on 2019-06-25

528 Eye in a Disk: eyeIntegration human pan-eye and body transcriptome database version 1.0

Swamy, V.; McGaughey, D.

10.1101/579482 — genomics — Posted on 2019-06-25

529 ORF Capture-Seq: a versatile method for targeted identification of full-length isoforms

Sheynkman, G. M.; Tuttle, K. S.; Tseng, E.; Underwood, J. G.; Yu, L.; Dong, D.; Smith, M. L.; Sebra, R.; Hao, T.; Calderwood, M. A.; Hill, D. E.; Vidal, M.

10.1101/604157 — genomics — Posted on 2019-06-25

530 Sex and area differences in the association between adiposity and lipid profile in Malawi

Goncalves Soares, A. L.; Banda, L.; Amberbir, A.; Jaffar, S.; Musicha, C.; Price, A.; Nyrienda, M. J.; Lawlor, D. A.; Crampin, A. C.

10.1101/553776 — epidemiology — Posted on 2019-06-25

531 Monte Carlo Simulation of Diffusion MRI in geometries constructed from two-photon microscopy of cortical gray matter

Gilani, N.; Hildebrand, S.; Schueth, A.; Roebroeck, A.

10.1101/626945 — biophysics — Posted on 2019-06-25

532 Hidden patterns of codon usage bias across kingdoms

Deng, Y.; Kalfon, J.; Chu, D.; von der Haar, T.

10.1101/478016 — bioinformatics — Posted on 2019-06-25

533 Optimal foraging and the information theory of gambling

Baddeley, R. J.; Franks, N. R.; Hunt, E. R.

10.1101/497198 — animal behavior and cognition — Posted on 2019-06-25

534 Oligomerization of the NLR immune receptor RPP7 triggered by the atypical resistance protein RPW8/HR as a ligand

Li, L.; Habring, A.; Wang, K.; Weigel, D.

10.1101/682807 — plant biology — Posted on 2019-06-25

535 A generalist pathogen view of diverse host evolutionary histories through polygenic virulence

Caseys, C.; Shi, G.; Soltis, N.; Gwinner, R.; Corwin, J.; Atwell, S.; Kliebenstein, D.

10.1101/507491 — plant biology — Posted on 2019-06-25

536 Interregional causal influences of brain metabolic activity reveal the spread of aging effects during normal aging

Di, X.; Wolfer, M.; Amend, M.; Wehrl, H.; Ionescu, T. M.; Pichler, B. J.; Biswal, B. B.; Alzheimer's Disease Neuroimaging Initiative,

10.1101/490292 — neuroscience — Posted on 2019-06-25

537 Post-hoc modification of linear models: combining machine learning with domain information to make solid inferences from noisy data

van Vliet, M.; Salmelin, R.

10.1101/518662 — neuroscience — Posted on 2019-06-25

538 Space, time, and captivity: quantifying the factors influencing the fecal microbiome of an alpine ungulate

Haworth, S. E.; White, K. S.; Cote, S. D.; Shafer, A. B. A.

10.1101/475459 — microbiology — Posted on 2019-06-25

539 How Homeostasis Limits Keratinocyte Evolution

Schenck, R. O.; Kim, E.; Bravo, R.; West, J.; Leedham, S.; Shibata, D.; Anderson, A. R. A.

10.1101/548131 — evolutionary biology — Posted on 2019-06-25

540 Evidence for natural selection and barrier leakage in candidate loci underlying speciation in wood ants

Kulmuni, J.; Nouhaud, P.; Pluckrose, L.; Satokangas, I.; Dhaygude, K.; Butlin, R. K.

10.1101/500116 — evolutionary biology — Posted on 2019-06-25

541 ΔN-Tp63 mediates Wnt/β-catenin-induced inhibition of differentiation in basal stem cells of mucociliary epithelia

Haas, M.; Gomez Vazquez, J. L.; Sun, D. I.; Tran, H. T.; Brislinger, M.; Tasca, A.; Shomroni, O.; Vleminckx, K.; Walentek, P.

10.1101/682534 — developmental biology — Posted on 2019-06-25

542 Notch signaling is required for survival of the germline stem cell lineage in testes of Drosophila melanogaster

Ng, C. L.; Qian, Y.; Schulz, C.

10.1101/682773 — developmental biology — Posted on 2019-06-25

543 Regulation of terminal hypertrophic chondrocyte differentiation in Prmt5 mutant mice modeling infantile idiopathic scoliosis

Liu, Z.; Ramachandran, J.; Vokes, S. A.; Gray, R. S.

10.1101/683136 — developmental biology — Posted on 2019-06-25

544 Context-specific functions of Notch in Drosophila blood cell progenitors

Blanco-Obregon, D. M.; Katz, M. J.; Durrieu, L.; Gandara, L.; Wappner, P.

10.1101/682658 — developmental biology — Posted on 2019-06-25

545 Synergistic interplay between PHF8 and HER2 signaling contributes to breast cancer development and drug resistance

Qi, H. H.; Liu, Q.; Borcherding, N.; Shao, P.; Maina, P. K.; Zhang, W.

10.1101/682476 — cancer biology — Posted on 2019-06-25

546 Molecular dynamics simulations and linear response theories jointly describe biphasic responses of myoglobin relaxation and reveal evolutionarily conserved frequent communicators

Huang, B.-C.; Yang, L.-W.

10.1101/682195 — biophysics — Posted on 2019-06-25

547 The Ca2+ Permeation Mechanism of the Ryanodine Receptor Revealed by a Multi-Site Ion Model

Zhang, A.; Yu, H.; Liu, C.; Song, C.

10.1101/682328 — biophysics — Posted on 2019-06-25

548 Live dynamical tracking of slncRNA speckles in single E. coli cells reveals bursts of fluorescence degradation

Granik, N.; Katz, N.; Shechtman, Y.; Amit, R.

10.1101/682518 — biophysics — Posted on 2019-06-25

549 Multi-modal Latent Factor Exploration of Atrophy, Cognitive and Tau Heterogeneity in Alzheimer’s Disease

Sun, N.; Mormino, E. C.; Chen, J.; Sabuncu, M. R.; Yeo, B. T. T.

10.1101/462143 — neuroscience — Posted on 2019-06-25

550 Sleepless and Desynchronized: Impaired Inter Trial Phase Coherence of Steady-State Potentials Following Sleep Deprivation

Eidelman-Rothman, M.; Ben-Simon, E.; Freche, D.; Keil, A.; Hendler, T.; Levit-Binnun, N.

10.1101/471730 — neuroscience — Posted on 2019-06-25

551 A meta-analysis of two high-risk prospective cohort studies reveals autism-specific transcriptional changes to chromatin, autoimmune, and environmental response genes in umbilical cord blood

Mordaunt, C. E.; Park, B. Y.; Bakulski, K. M.; Feinberg, J. I.; Croen, L. A.; Ladd-Acosta, C.; Newschaffer, C. J.; Volk, H. E.; Ozonoff, S.; Hertz-Picciotto, I.; LaSalle, J. M.; Schmidt, R. J.; Fallin, D.

10.1101/486498 — genomics — Posted on 2019-06-25

552 First detection of tick-borne encephalitis virus in Ixodes ricinus ticks and their rodent hosts in Moscow, Russia

Makenov, M. T.; Karan, L. S.; Shashina, N. I.; Akhmetshina, M. B.; Zhurenkova, O. B.; Kholodilov, I. S.; Karganova, G. G.; Smirnova, N. S.; Grigoreva, Y. E.; Yankovskaya, Y. D.; Fyodorova, M. V.

10.1101/480475 — epidemiology — Posted on 2019-06-25

553 A non-canonical chemical feedback self-limits nitric oxide-cyclic GMP signaling in health and disease

Dao, V. T.-V.; Elbatreek, M. H.; Deile, M.; Nedvetsky, P. I.; Güldner, A.; Ibarra, C.; Gödecke, A.; Schmidt, H. H. H. W.

10.1101/383208 — pharmacology and toxicology — Posted on 2019-06-25

554 USE: An integrative suite for temporally-precise psychophysical experiments in virtual environments for human, nonhuman, and artificially intelligent agents

Watson, M. R.; Voloh, B.; Thomas, C. J.; Hasan, A.; Womelsdorf, T.

10.1101/434944 — neuroscience — Posted on 2019-06-25

555 Attenuating the DNA damage response to double strand breaks is neuroprotective

Tuxworth, R. I.; Taylor, M. J.; Martin Anduaga, A.; Hussien-Ali, A.; Chatzimatthaiou, S.; Longland, J.; Thompson, A. M.; Almutiri, S.; Alifragis, P.; Kyriacou, C.; Kysela, B.; Ahmed, Z.

10.1101/440636 — neuroscience — Posted on 2019-06-25

556 Ataxin-7 and non-stop coordinate SCAR protein levels, subcellular localization, and actin cytoskeleton organization

Cloud, V.; Thapa, A.; Morales-Sosa, P.; Miller, T.; Momtahan, E.; Jack, J. L.; Gerhart, P.; Leiva, E.; Rapp, S. R.; Miller, S. A.; Holsapple, D.; Shelton, L. G.; Pierce, R. A.; Martin-Brown, S.; Florens, L.; Washburn, M. P.; Mohan, R. D.

10.1101/309476 — cell biology — Posted on 2019-06-25

557 Altered orbitofrontal sulcogyral patterns in gambling disorder: a multicenter study

Li, Y.; Wang, Z.; Boileau, I.; Dreher, J.-C.; Gelskov, S.; Genauck, A.; Joutsa, J.; Kaasinen, V.; Perales, J.; Romanczuk-Seiferth, N.; Ruiz de Lara, C. M.; Siebner, H. R.; van Holst, R. J.; van Timmeren, T.; Sescousse, G.

10.1101/439034 — neuroscience — Posted on 2019-06-25

558 Dimensionality reduction by UMAP to visualize physical and genetic interactions

Dorrity, M. W.; Saunders, L. M.; Queitsch, C.; Fields, S.; Trapnell, C.

10.1101/681726 — genomics — Posted on 2019-06-25

559 Appraising the causal relevance of DNA methylation for risk of lung cancer

Battram, T.; Richmond, R.; Baglietto, L.; Haycock, P.; Perduca, V.; Bojesen, S.; Gaunt, T.; Hemani, G.; Guida, F.; Carreras Torres, R.; Hung, R.; Amos, C.; Freeman, J.; Sandanger, T.; Nost, T. H.; Nordestgaard, B.; Teschendorff, A.; Polidoro, S.; Vineis, P.; Severi, G.; Hodge, A.; Giles, G.; Grankvist, K.; Johansson, M.; Johansson, M.; Davey Smith, G.; Relton, C.

10.1101/287888 — epidemiology — Posted on 2019-06-25

560 Exploration of cell development pathways through high dimensional single cell analysis in trajectory space

Dermadi, D.; Bscheider, M.; Bjegovic, K.; Lazarus, N. H.; Szade, A.; Hadeiba, H.; Butcher, E. C.

10.1101/336313 — bioinformatics — Posted on 2019-06-25

561 Pseudomonas aeruginosa PA5oct jumbo phage impacts planktonic and biofilm population and reduces its host virulence

Olszak, T.; Danis-Wlodarczyk, K.; Arabski, M.; Gula, G.; Maciejewska, B.; Wasik, S.; Lood, C.; Higgins, G.; Harvey, B. J.; Lavigne, R.; Drulis-Kawa, Z.

10.1101/405027 — microbiology — Posted on 2019-06-25

562 Point of Care Diagnostic Deployment and Targeted Treatment of Antimicrobial Resistant Non-Typhoidal Salmonella: a New Mathematical Model and Cost-Benefit Analysis

Manore, C.; Graham, T.; Carr, A.; Feryn, A.; Jakhar, S.; Mukundan, H.; Callender, H.

10.1101/384933 — epidemiology — Posted on 2019-06-25

563 Molecular flexibility of DNA as a key determinant of RAD51 recruitment

Paoletti, F.; El-Sagheer, A.; Allard, J.; Brown, T.; Dushek, O.; Esashi, F.

10.1101/392795 — biochemistry — Posted on 2019-06-25

564 Rationally derived inhibitors of hepatitis C virus (HCV) p7 channel activity reveal prospect for bimodal antiviral therapy

Shaw, J.; Gosein, R.; Kalita, M. M.; Kankanala, J.; Mahato, D. R.; Foster, T.; Scott, C.; Brown, E.; King, B. J.; Bentham, M.; Wetherill, L.; Bloy, A.; Samson, A.; Harris, M.; Mankouri, J.; Rowlands, D.; Macdonald, A.; Tarr, A. W.; Fischer, W.; Foster, R.; Griffin, S.

10.1101/374793 — microbiology — Posted on 2019-06-25

565 Grid cells implement a location-dependent directional code

Gerlei, K.; Passlack, J.; Stevens, H.; Papastathopoulos, I.; Nolan, M.

10.1101/681312 — neuroscience — Posted on 2019-06-25

566 GC content shapes mRNA decay and storage in human cells

Courel, M.; Clement, Y.; Foretek, D.; Vidal Cruchez, O.; Yi, Z.; Benassy, M.-N.; Kress, M.; Vindry, C.; Benard, M.; Bossevain, C.; Antoniewski, C.; Morillon, A.; Brest, P.; Hubstenberger, A.; Roest Crollius, H.; Standart, N.; Weil, D.

10.1101/373498 — molecular biology — Posted on 2019-06-25

567 Heterogeneous local dynamics revealed by classification analysis of spatially disaggregated time series data

Perkins, A.; Rodriguez-Barraquer, I.; Manore, C.; Siraj, A.; Espana, G.; Barker, C.; Johansson, M.; Reiner, R.

10.1101/276006 — epidemiology — Posted on 2019-06-25

568 Help thine enemy: the evolution of short ranging signals.

Szamado, S.

10.1101/255836 — evolutionary biology — Posted on 2019-06-25

569 Vascular Progenitors Generated from Tankyrase Inhibitor-Regulated Diabetic Induced Pluripotent Stem Cells Potentiate Efficient Revascularization of Ischemic Retina

Park, T. S.; Zimmerlin, L.; Evans-Moses, R.; Thomas, J.; Huo, J. S.; Kanherkar, R.; He, A.; Ruzgar, N.; Metzger, S.; Grebe, R.; Bhutto, I.; Lutty, G.; Zambidis, E. T.

10.1101/678599 — developmental biology — Posted on 2019-06-25

570 Read correction for non-uniform coverages

Marchet, C.; Dufresne, Y.; Limasset, A.

10.1101/673624 — bioinformatics — Posted on 2019-06-25

571 genesorteR: Feature Ranking in Clustered Single Cell Data

Ibrahim, M. M.; Kramann, R.

10.1101/676379 — bioinformatics — Posted on 2019-06-25

572 Genome-wide characterization of satellite DNA arrays in a complex plant genome using nanopore reads

Vondrak, T.; Avila Robledillo, L.; Novak, P.; Koblizkova, A.; Neumann, P.; Macas, J.

10.1101/677575 — genomics — Posted on 2019-06-25

573 Heterogeneous expression of Pil3 pilus is critical for Streptococcus gallolyticus translocation across polarized colonic epithelial monolayers

Dramsi, S.; Martins, M.; du Merle, L.; Trieu-Cuot, P.

10.1101/682278 — microbiology — Posted on 2019-06-25

574 Rescue of Tomato spotted wilt tospovirus entirely from cDNA clones, establishment of the first reverse genetics system for a segmented (-)RNA plant virus

Feng, M.; Cheng, R.; Chen, M.; Guo, R.; Li, L.; Feng, Z.; Wu, J.; Xie, L.; Hong, J.; Zhang, Z.; Kormelink, R.; Tao, X.

10.1101/680900 — microbiology — Posted on 2019-06-25

575 Mycobacterium tuberculosis infection boosts B cell responses to unrelated pathogens

Kimuda, S. G.; Andia-Biraro, I.; Sebina, I.; Egesa, M.; Nalwoga, A.; Smith, S. G.; Ssentalo Bagaya, B.; Levin, J.; Elliott, A.; Raynes, J. G.; Cose, S.

10.1101/680058 — immunology — Posted on 2019-06-25

576 A chromosome-scale assembly of allotetraploid Brassica juncea (AABB) elucidates comparative architecture of the A and B genomes

Paritosh, K.; Yadava, S. K.; Singh, P.; Bhayana, L.; Mukhopadhyay, A.; Gupta, V.; Bisht, N. C.; Zhang, J.; Kudrna, D.; Copetti, D.; Wing, R. A.; Lachagari, V. B. R.; Pradhan, A. K.; Pental, D.

10.1101/681080 — genomics — Posted on 2019-06-25

577 Mitochondrial genome of non-photosynthetic mycoheterotrophic plant Hypopitys monotropa: unusual structure and extensive RNA editing

Shtratnikova, V. Y.; Schelkunov, M. I.; Logacheva, M. D.

10.1101/681718 — evolutionary biology — Posted on 2019-06-25

578 Understanding the functional and structural differences across excitatory and inhibitory neurons

Minni, S.; Ji-An, L.; Moskovitz, T.; Lindsay, G.; Miller, K.; Dipoppa, M.; Yang, G. R.

10.1101/680439 — neuroscience — Posted on 2019-06-25

579 Development and Binocular Matching of Orientation Selectivity in Visual Cortex: A Computational Model

Xu, X.; Cang, J.; Riecke, H.

10.1101/682211 — neuroscience — Posted on 2019-06-25

580 5-Fluorouracil treatment induces characteristic T>G mutations in human cancer

Christensen, S.; vd Roest, B.; Besselink, N.; Janssen, R.; Boymans, S.; Martens, J.; Yaspo, M.-L.; Priestley, P.; Center for Personalized Cancer Treatment, ; Kuijk, E.; Cuppen, E.; van Hoeck, A.

10.1101/681262 — cancer biology — Posted on 2019-06-25

581 Prefrontal Cortex Regulates Chronic Stress-Induced Cardiovascular Susceptibility

10.1101/675835 — neuroscience — Posted on 2019-06-24

582 Impact of insertion sequences on convergent evolution of Shigella species

Hawkey, J.; Monk, J. M.; Billman-Jacobe, H.; Palsson, B.; Holt, K. E.

10.1101/680777 — microbiology — Posted on 2019-06-24

583 An antibiotic-sensing leader peptide regulates translation and premature Rho-dependent transcription termination of the topAI gene in Escherichia coli

Baniulyte, G.; Wade, J.

10.1101/682021 — microbiology — Posted on 2019-06-24

584 Discovering candidate imprinted genes and Imprinting Control Regions in the human genome

Bina, M.

10.1101/678151 — genomics — Posted on 2019-06-24

585 Deep Learning Interpretation of Echocardiograms

Ghorbani, A.; Ouyang, D.; Abid, A.; He, B.; Chen, J. H.; Harrington, R. A.; Liang, D. H.; Ashley, E. A.; Zou, J. Y.

10.1101/681676 — bioengineering — Posted on 2019-06-24

586 A phylogenomic analysis of Nepenthes (Nepenthaceae)

Murphy, B.; Forest, F.; Barraclough, T.; Rosindell, J.; Bellot, S.; Cowan, R.; Golos, M.; Jebb, M.; Cheek, M.

10.1101/680488 — evolutionary biology — Posted on 2019-06-24

587 Real time health monitoring through urine metabolomics

Miller, I. J.; Peters, S. R.; Overmyer, K. A.; Paulson, B. R.; Westphall, M. S.; Coon, J. J.

10.1101/681742 — biochemistry — Posted on 2019-06-24

588 On-demand, cell-free biomanufacturing of conjugate vaccines at the point-of-care

Stark, J. C.; Jaroentomeechai, T.; Moeller, T. D.; Dubner, R. S.; Hsu, K. J.; Stevenson, T. C.; DeLisa, M. P.; Jewett, M. C.

10.1101/681841 — synthetic biology — Posted on 2019-06-24

589 Decoding and perturbing decision states in real time

Peixoto, D.; Verhein, J.; Kiani, R.; Kao, J. C.; Nuyujukian, P.; Chandrasekaran, C.; Brown, J.; Fong, S.; Ryu, S. I.; Shenoy, K. V.; Newsome, W. T.

10.1101/681783 — neuroscience — Posted on 2019-06-24

590 Data-driven detection of latent atrophy factors related to phenotypical variants of posterior cortical atrophy

Groot, C.; Yeo, B. T. T.; Vogel, J. W.; Zhang, X.; Sun, N.; Mormino, E. C.; Pijnenburg, Y. A.; Miller, B. L.; Rosen, H. J.; La Joie, R.; Barkhof, F.; Scheltens, P.; Rabinovici, G. D.; van der Flier, W. M.; Ossenkoppele, R.

10.1101/679225 — neuroscience — Posted on 2019-06-24

591 Human and mouse essentiality screens as a resource for disease gene discovery

Cacheiro, P.; Munoz-Fuentes, V.; Murray, S. A.; Dickinson, M. E.; Bucan, M.; Nutter, L. M. J.; Peterson, K. A.; Haselimashhadi, H.; Flenniken, A. M.; Morgan, H.; Westerberg, H.; Konopka, T.; Hsu, C.-W.; Christiansen, A.; Lanza, D. G.; Beaudet, A. L.; Heaney, J. D.; Fuchs, H.; Gailus-Durner, V.; Sorg, T.; Prochazka, J.; Novosadova, V.; Lelliott, C. J.; Wardle-Jones, H.; Wells, S.; Teboul, L.; Cater, H.; Stewart, M.; Hough, T.; Wurst, W.; Sedlacek, R.; Adams, D. J.; Seavitt, J. R.; Tocchini-Valentini, G.; Mammano, F.; Braun, R. E.; McKerlie, C.; Herault, Y.; Hrabe de Angelis, M.; Mallon, A.-M.;

10.1101/678250 — genomics — Posted on 2019-06-24

592 A Universal Phase Transition in Plankton Trait Dynamics

Held, J.; Lorimer, T.; Stoop, R.; Pomati, F.; Albert, C.

10.1101/679209 — ecology — Posted on 2019-06-24

593 Misoprostol Attenuates Cardiomyocyte Proliferation in the Neonatal Heart Through Bnip3 and Perinuclear Calcium Signaling

Martens, M. D.; Field, J. T.; Chapman, D.; West, A. R.; Ivanco, T. L.; Gordon, J. W.

10.1101/681692 — cell biology — Posted on 2019-06-24

594 Plant mixed lineage kinase domain-like proteins limit biotrophic pathogen growth

Mahdi, L.; Huang, M.; Zhang, X.; Nakano, R. T.; Kopp, L. B.; Saur, I. M. L.; Jacob, F.; Kovacova, V.; Lapin, D.; Parker, J. E.; Murphy, J. M.; Hofmann, K.; Schulze-Lefert, P.; Chai, J.; Maekawa, T.

10.1101/681015 — plant biology — Posted on 2019-06-24

595 Decoding of the other’s focus of attention by a temporal cortex module

Ramezanpour, H.; Thier, P.

10.1101/681957 — neuroscience — Posted on 2019-06-24

596 Computer-assisted EEG diagnostic review for idiopathic generalized epilepsy

Clarke, S.; Karoly, P.; Nurse, E.; Seneviratne, U.; Taylor, J.; Knight-Sadler, R.; Kerr, R.; Moore, B.; Hennessy, P.; Mendis, D.; Lim, C.; Miles, J.; Cook, M.; Freestone, D.; D'Souza, W.

10.1101/682112 — neuroscience — Posted on 2019-06-24

597 Nucleosome-CHD4 chromatin remodeller structure explains human disease mutations

Farnung, L.; Ochmann, M.; Cramer, P.

10.1101/665562 — molecular biology — Posted on 2019-06-24

598 Recently emerged and diverse lineages of Xanthomonas perforans have independently evolved through plasmid acquisition and homologous recombination originating from multiple Xanthomonas species

Newberry, E.; Bhandari, R.; Minsavage, G. V.; Timilsina, S.; Jibrin, M.; Kemble, J.; Sikora, E.; Jones, J. B.; Potnis, N.

10.1101/681619 — genomics — Posted on 2019-06-24

599 Genomic aberration based molecular signatures efficiently characterize homologous recombination deficiency in prostate cancer

Sztupinszki, Z.; Diossy, M.; Krzystanek, M.; Borcsok, J.; Pomerantz, M.; Tisza, V.; Spisak, S.; Rusz, O.; Csabai, I.; Freedman, M.; Szallasi, Z.

10.1101/681114 — cancer biology — Posted on 2019-06-24

600 Development and Validation of Phenotype Classifiers across Multiple Sites in the Observational Health Sciences and Informatics (OHDSI) Network

Kashyap, M.; Seneviratne, M. G.; Banda, J. M.; Falconer, T.; Ryu, B.; Yoo, S.; Hripcsak, G.; Shah, N. H.

10.1101/673418 — bioinformatics — Posted on 2019-06-24

601 Deriving Disease Modules from the Compressed Transcriptional Space Embedded in a Deep Auto-encoder

Dwivedi, S. K.; Tjarnberg, A.; Tegner, J.; Gustafsson, M.

10.1101/680983 — systems biology — Posted on 2019-06-24

602 Chromatin accessibility dynamics of Chlamydia-infected epithelial cells

Hayward, R. J.; Marsh, J. W.; Humphrys, M. S.; Huston, W. M.; Myers, G. S. A.

10.1101/681999 — systems biology — Posted on 2019-06-24

603 Sinoseris (Crepidinae, Cichorieae, Asteraceae), a new genus endemic to China of three species, two of them new to science

Wang, Z.-H.; Kilian, N.; Chen, Y.-P.; Peng, H.

10.1101/680843 — plant biology — Posted on 2019-06-24

604 Assessment of the gene expression profiles of leukocytes from different isolations

Xing, Y.; Yang, X.; Chen, H.; Zhu, S.; Xu, J.; Chen, Y.; Zeng, J.; Chen, F.; Jiang, H.; Wang, W.-J.

10.1101/678904 — molecular biology — Posted on 2019-06-24

605 Human caspase-1 autoproteolysis is required for ASC-dependent and -independent inflammasome activation

Ball, D. P.; Taabazuing, C. Y.; Griswold, A. R.; Orth, E. L.; Rao, S. D.; Kotliar, I. B.; Johnson, D. C.; Bachovchin, D. A.

10.1101/681304 — immunology — Posted on 2019-06-24

606 A resource for analyzing C. elegans’ gene expression data using transcriptional gene modules and module-weighted annotations

Cary, M. P.; Podshivalova, K.; Kenyon, C.

10.1101/678482 — bioinformatics — Posted on 2019-06-24

607 Glycan size and attachment site location affect electron transfer dissociation (ETD) fragmentation and automated glycopeptide identification

Alagesan, K.; Hinneburg, H.; Seeberger, P.; Varon Silva, D.; Kolarich, D.

10.1101/676288 — biochemistry — Posted on 2019-06-24

608 Phytochemical Constituency Profiling and Antimicrobial Activity Screening of Seaweeds Extracts Collected from the Bay of Bengal Sea Coasts

Hasan, M.; Imran, M. A. S.; Bhuiyan, F. R.; Ahmed, S. R.; Shanzana, P.; Moli, M. A.; Foysal, S. H.; Dabi, S. B.

10.1101/680348 — pharmacology and toxicology — Posted on 2019-06-24

609 Translatomic database of cortical astroglia across male and female mouse development reveals two distinct developmental phenotypes

Rurak, G. M.; Simard, S.; Van Geel, A.; Stead, J.; Woodside, B.; Coppola, G.; Salmaso, N.

10.1101/681684 — neuroscience — Posted on 2019-06-24

610 Illusory sound texture reveals multi-second statistical completion in auditory scene analysis

McWalter, R.; McDermott, J. H.

10.1101/681965 — neuroscience — Posted on 2019-06-24

611 Maximizing viral detection with SIV droplet digital PCR (ddPCR) assays

Long, S.; Berkemeier, B.

10.1101/668285 — molecular biology — Posted on 2019-06-24

612 The anaerobic digestion microbiome: a collection of 1600 metagenome-assembled genomes shows high species diversity related to methane production

Campanaro, S.; Treu, L.; Rodriguez Rojas, L. M.; Kovalovszki, A.; Ziels, R.; Maus, I.; Zhu, X.; Kougias, P. G.; Basile, A.; Luo, G.; Schlüter, A.; Konstantinidis, K. T.; Angelidaki, I.

10.1101/680553 — microbiology — Posted on 2019-06-24

613 A personal and population-based Egyptian genome reference

Wohlers, I.; Kuenstner, A.; Munz, M.; Olbrich, M.; Faehnrich, A.; Ma, C.; Hirose, M.; El-Mosallamy, S.; Salama, M.; Busch, H.; Ibrahim, S.

10.1101/681254 — genetics — Posted on 2019-06-24

614 Fibronectin receptor integrin α5β1 regulates assembly of PP2A complexes through PDE4D: modulation of vascular inflammation and atherosclerosis

Yun, S.; Hu, R.; Schwaemmle, M. E.; Scherer, A. N.; Zhuang, Z.; Koleske, A. J.; Pallas, D. C.; Schwartz, M. A.

10.1101/680728 — cell biology — Posted on 2019-06-24

615 APOC2 accelerates colorectal cancer progression via modulating lipid metabolism and transcriptional activity of PHF8

Peng, Z.; Chen, J.; Xiao, C.; Wang, Y.; Song, G.; Wang, X.; Liu, X.; Chen, J.; Lu, H.; Kuai, J.; Qin, X.; Guo, W.; Tang, H.

10.1101/680967 — cancer biology — Posted on 2019-06-24

616 Protein Tyrosine Phosphatase 4A3 (PTP4A3) modulates Src signaling in T-cell Acute Lymphoblastic Leukemia to promote leukemia migration and progression

Wei, M.; Haney, M. G.; Blackburn, J.

10.1101/681791 — cancer biology — Posted on 2019-06-24

617 p63 sets the threshold for induction of apoptosis using a kinetically encoded ‘doorbell-like’ mechanism

Gebel, J.; Tuppi, M.; Chaikuad, A.; Hoette, K.; Schulz, L.; Loehr, F.; Gutfreund, N.; Finke, F.; Schroeder, M.; Henrich, E.; Mezhyrova, J.; Lehnert, R.; Pampaloni, F.; Hummer, G.; Stelzer, E. H. K.; Knapp, S.; Doetsch, V.

10.1101/681007 — biochemistry — Posted on 2019-06-24

618 The full-length transcriptome of Spartina alterniflora reveals the complexity of high salt tolerance in monocotyledonous halophyte

Ye, W.; Wang, T.; Wei, W.; Lou, S.; Lan, F.; Zhu, S.; Li, Q.; Ji, G.; Lin, C.; Wu, X.; Ma, L.

10.1101/680819 — plant biology — Posted on 2019-06-24

619 Maturation of cortical microstructure and cognitive development in childhood and adolescence: a T1w/T2w ratio MRI study

Norbom, L. B.; Rokicki, J.; Alnaes, D.; Kaufmann, T.; Doan, N. T.; Andreassen, O. A.; Westlye, L. T.; Tamnes, C. K.

10.1101/681221 — neuroscience — Posted on 2019-06-24

620 Reach and Grasp Altered in Pantomime String-Pulling: A Test of the Action/Perception Theory in a Bilateral Reaching Task

Singh, S.; Mandziak, A.; Barr, K.; Blackwell, A. A.; Mohajerani, M. H.; Wallace, D. G.; Whishaw, I. Q.

10.1101/679811 — neuroscience — Posted on 2019-06-24

621 Poor test-retest reliability of task-fMRI: New empirical evidence and a meta-analysis

Elliott, M. L.; Knodt, A. R.; Ireland, D.; Morris, M. L.; Polton, R.; Ramrakha, S.; Sison, M. L.; Moffitt, T. E.; Caspi, A.; Hariri, A.

10.1101/681700 — neuroscience — Posted on 2019-06-24

622 Regression from pathological hypertrophy is sexually dimorphic and stimulus-specific

Muehleman, D.; Swearingen, A. R.; Leinwand, L. A.

10.1101/678540 — molecular biology — Posted on 2019-06-24

623 Polyhydroxyalkanoate granule accumulation makes optical density measurement an unreliable method for bacterial growth assessment in Burkholderia thailandensis

Martinez, S.; Deziel, E.

10.1101/682161 — microbiology — Posted on 2019-06-24

624 STING recruits NLRP3 to the ER and deubiquitinates NLRP3 to activate the inflammasome

Wang, W.; Hu, D.; Feng, Y.; Wu, C.; Li, A.; Wang, Y.; Chen, K.; Tian, M.; Xiao, F.; Zhang, Q.; Shereen, M. A.; Chen, W.; Pan, P.; Wan, P.; Liu, W.; Liu, F.; Wu, K.; Li, G.; Liu, Y.; Wu, J.

10.1101/681338 — immunology — Posted on 2019-06-24

625 Temperature-Dependent Regulation of Upstream Open Reading Frame Translation in S. Cerevisiae

Kulkarni, S. D.; Zhou, F.; Sen, N.; Zhang, H.; Hinnebusch, A. G.; Lorsch, J. R.

10.1101/678409 — genomics — Posted on 2019-06-24

626 Redlisting the redlist: a global analysis of species distributions and biodiversity

Hughes, A. C.

10.1101/676460 — ecology — Posted on 2019-06-24

627 PEGylated surfaces for the study of DNA-protein interactions by atomic force microscopy

Akpinar, B.; Bell, N.; Pyne, A.; Hoogenboom, B.

10.1101/680561 — biophysics — Posted on 2019-06-24

628 Increasing the efficiency of long-read sequencing for hybrid assembly with k-mer-based multiplexing

Dilthey, A.; Meyer, S. A.; Kaasch, A.

10.1101/680827 — bioinformatics — Posted on 2019-06-24

629 Classification of human white blood cells using machine learning for stain-free imaging flow cytometry

Lippeveld, M.; Knill, C.; Ladlow, E.; Fuller, A.; Michaelis, L. J.; Saeys, Y.; Filby, A.; Peralta, D.

10.1101/680975 — bioinformatics — Posted on 2019-06-24

630 PICKER-HG: a web server using random forests for classifying human genes into categories

Fabris, F.; Palmer, D.; Farooq, Z.; de Magalhaes, J. P.; Freitas, A. A.

10.1101/681460 — bioinformatics — Posted on 2019-06-24

631 Activity-Based Ratiometric FRET Probe Reveals Oncogene-Driven Changes in Labile Copper Pools Induced by Altered Glutathione Metabolism

Chung, C. Y.-S.; Posimo, J. M.; Lee, S.; Tsang, T.; Davis, J. M.; Brady, D. C.; Chang, C. J.

10.1101/682047 — biochemistry — Posted on 2019-06-24

632 Conformational dynamics of FERM-mediated autoinhibition in Pyk2 tyrosine kinase.

Loving, H. S.; Underbakke, E. S.

10.1101/681932 — biochemistry — Posted on 2019-06-24

633 Neurocomputational mechanisms underlying emotional awareness: insights afforded by deep active inference and their potential clinical relevance

Smith, R.; Lane, R. D.; Parr, T.; Friston, K.

10.1101/681288 — neuroscience — Posted on 2019-06-24

634 Topographic specificity of alpha power during auditory spatial attention

Deng, Y.; Choi, I.; Shinn-Cunningham, B.

10.1101/681361 — neuroscience — Posted on 2019-06-24

635 Changes in the intracranial volume from early adulthood to the sixth decade of life: A longitudinal study

Caspi, Y.; Brouwer, R. M.; Schnack, H. G.; van de Nieuwenhuijzen, M. E.; Cahn, W.; Kahn, R. S.; Niessen, W. J.; van der Lugt, A.; Hulshoff Pol, H.

10.1101/677898 — neuroscience — Posted on 2019-06-24

636 Antisense oligonucleotide therapy rescues aggresome formation in a novel Spinocerebellar Ataxia type 3 human embryonic stem cell line.

Moore, L. R.; Keller, L.; Bushart, D. D.; Delatorre, R.; Li, D.; McLoughlin, H.; Costa, M. d. C.; Shakkottai, V. G.; Smith, G. D.; Paulson, H. L.

10.1101/681650 — neuroscience — Posted on 2019-06-24

637 Excitatory and inhibitory attentional mechanisms involved in the control of distractor interference in working memory: A neural oscillations perspective

Roesner, M.; Arnau, S.; Skiba, I.; Wascher, E.; Schneider, D.

10.1101/681031 — neuroscience — Posted on 2019-06-24

638 Cyclin binding Cy motifs have multiple activities in the initiation of DNA replication

Hossain, M.; Bhalla, K.; Stillman, B.

10.1101/681668 — molecular biology — Posted on 2019-06-24

639 Potential antigenic mismatch of the H3N2 component of the 2019 Southern Hemisphere influenza vaccine

Gouma, S.; Weirick, M.; Hensley, S.

10.1101/681734 — microbiology — Posted on 2019-06-24

640 The mouse lung early cellular innate immune response is not sufficient to control fungal infection with Cryptococcus neoformans

Rudman, J.; Marriott, H. M.; Carlin, L. M.; Johnston, S. A.

10.1101/679274 — immunology — Posted on 2019-06-24

641 Mutational processes of distinct POLE exonuclease domain mutants drive an enrichment of a specific TP53 mutation in colorectal cancer

Fang, H.; Barbour, J. A.; Poulos, R. C.; Katainen, R.; Aaltonen, L. A.; Wong, J. W. H.

10.1101/681767 — genomics — Posted on 2019-06-24

642 Designing gene drives to limit spillover to non-target populations

Greenbaum, G.; Feldman, M. W.; Rosenberg, N. A.; Kim, J.

10.1101/680744 — evolutionary biology — Posted on 2019-06-24

643 Adaptation to life on land at 21% O2 via transition from ferredoxin- to NADH-dependent redox balance

Gould, S. B.; Garg, S. G.; Handrich, M.; Nelson-Sathi, S.; Gruenheit, N.; Tielens, A. G.; Martin, W. F.

10.1101/680934 — evolutionary biology — Posted on 2019-06-24

644 Sperm DNA damage causes genomic instability in early embryonic development

Middelkamp, S.; van Tol, H.; Spierings, D.; Boymans, S.; Guryev, V.; Roelen, B.; Lansdorp, P.; Cuppen, E.; Kuijk, E.

10.1101/681296 — developmental biology — Posted on 2019-06-24

645 CellPhoneDB v2.0: Inferring cell-cell communication from combined expression of multi-subunit receptor-ligand complexes

Efremova, M.; Vento-Tormo, M.; Teichmann, S. A.; Vento-Tormo, R.

10.1101/680926 — cell biology — Posted on 2019-06-24

646 Extreme tolerance of Paramecium to acute injury induced by γ rays

Wang, Y.; Duan, X.; Hu, Y.

10.1101/681098 — cell biology — Posted on 2019-06-24

647 Loss of SHMT2 mediates 5-FU chemoresistance by inducing autophagy in colorectal cancer

Peng, Z.; Chen, J.; Fan, G.; Xiao, C.; Wang, X.; Wang, Y.; Song, G.; Liu, X.; Chen, J.; Lu, H.; Guo, W.; Tang, H.; Zhuang, G.

10.1101/680892 — cancer biology — Posted on 2019-06-24

648 TGAC Browser: an open-source genome browser for non-model organisms

Thanki, A. S.; Bian, X.; Davey, R. P.

10.1101/677658 — bioinformatics — Posted on 2019-06-24

649 Labelling effect in insects: cue associations influence perceived food value in ants

Wendt, S.; Czaczkes, T. J.

10.1101/680959 — animal behavior and cognition — Posted on 2019-06-24

650 Multidimensional phenotyping predicts lifespan and quantifies health in C. elegans

Martineau, C. N.; Brown, A. E.; Laurent, P.

10.1101/681197 — systems biology — Posted on 2019-06-24

651 The genome design suite: enabling massive in-silico experiments to design genomes.

Chalkley, O.; Purcell, O.; Grierson, C.; Marucci, L.

10.1101/681270 — systems biology — Posted on 2019-06-24

652 A bacterial assay for rapid screening of IAA catabolic enzymes

Brunoni, F.; Collani, S.; Simura, J.; Schmid, M.; Bellini, C.; Ljung, K.

10.1101/681379 — plant biology — Posted on 2019-06-24

653 Adipocyte JAK2 mediates aging-associated metabolic liver disease and progression to hepatocellular carcinoma

Corbit, K. J.; Wilson, C. G.; Lowe, D.; Tran, J. L.; Vera, N. B.; Clasquin, M.; Mattis, A. N.; Weiss, E. J.

10.1101/681809 — physiology — Posted on 2019-06-24

654 Structural priming is supported by different components of non-declarative memory: Evidence from priming across the lifespan

Heyselaar, E.; Wheeldon, L.; Segaert, K.

10.1101/190355 — neuroscience — Posted on 2019-06-24

655 Robust emergence of sharply tuned place cell responses in hippocampal neurons with structural and biophysical heterogeneities

Basak, R.; Narayanan, R.

10.1101/681189 — neuroscience — Posted on 2019-06-24

656 TLR3 Deficiency Leads to Altered Immune Responses to Chlamydia trachomatis Infection in Human Oviduct Epithelial Cells

Xu, J. Z.; Kumar, R.; Gong, H.; Luyao, L.; Ramos-Solis, N.; Li, Y.; Derbigny, W. A.

10.1101/680793 — microbiology — Posted on 2019-06-24

657 Development of a Genomic DNA Reference Material Panel for Thalassemia Genetic Testing

Yin, Z.-Z.; Qu, S.-F.; Huang, C.-F.; Chen, F.; Li, J.-B.; Chen, S.-P.; Zheng, Y.; Zhang, X.; Yang, X.-X.; Xie, L.-X.; Wei, J.-T.; Wei, F.-X.; Guo, J.; Huang, J.

10.1101/676015 — genetics — Posted on 2019-06-24

658 Estimation of Speciation Times Under the Multispecies Coalescent

Peng, J.; Swofford, D.; Kubatko, L.

10.1101/681023 — evolutionary biology — Posted on 2019-06-24

659 The Threshold Elemental Ratio of an ectotherm decreases then increases with rising temperature

Ruiz, T.; Koussoroplis, A.-M.; Danger, M.; Aguer, J.-P.; Morel-Desrosiers, N.; Bec, A.

10.1101/681239 — ecology — Posted on 2019-06-24

660 Contriving a chimeric polyvalent vaccine to prevent infections caused by Herpes Simplex Virus (Type-1 and Type-2): an exploratory immunoinformatic approach

Hasan, M.; Islam, M. S.; Chakraborty, S.; Mustafa, A. H.; Azim, K. F.; Joy, Z. F.; Hossain, M. N.; Foysal, S. H.; Hasan, M. N.

10.1101/679639 — bioinformatics — Posted on 2019-06-24

661 Connecting gene regulatory relationships to neurobiological mechanisms of brain disorders

Sey, N. Y. A.; Fauni, H.; Ma, W.; Won, H.

10.1101/681353 — neuroscience — Posted on 2019-06-24

662 M. tuberculosis microvariation is common and is associated with transmission: analysis of three years prospective universal sequencing in England

Wyllie, D. H.; Do, T.; Myers, R.; Nikolayevskyy, V.; Crook, D. W.; Alexander, E.; Robinson, E.; Walker, A. S.; Campbell, C. N.; Smith, E. G.

10.1101/681502 — microbiology — Posted on 2019-06-24

663 Spatiotemporal trends in polychlorinated biphenyl concentrations in seafood based on long-term monitoring and remediation in New Bedford Harbor, Massachusetts

Crawford, K. A.; Schlezinger, J. J.; Craffey, P.; Heiger-Bernays, W. J.

10.1101/675355 — ecology — Posted on 2019-06-24

664 Genomic Analyses of SLAMF7 CAR-T Cells Manufactured by Sleeping Beauty Transposon Gene Transfer for Immunotherapy of Multiple Myeloma

Miskey, C.; Amberger, M.; Reiser, M.; Prommersberger, S.; Beckmann, J.; Machwirth, M.; Einsele, H.; Hudecek, M.; Bonig, H.; Ivics, Z.

10.1101/675009 — bioengineering — Posted on 2019-06-24

665 The Evolution of Genetic Bandwagoning

Solon, I.

10.1101/064493 — evolutionary biology — Posted on 2019-06-24

666 Screening of clustered regulatory elements reveals functional cooperating dependencies in Leukemia.

Benbarche, S.; Lopez, C. K.; Salataj, E.; Thirant, C.; Laiguillon, M.-C.; Aid, Z.; Lecourt, S.; Antonini, M.; Pardieu, B.; Petit, A.; Puissant, A.; Chaumeil, J.; Mercher, T.; Lobry, C.

10.1101/680165 — cancer biology — Posted on 2019-06-24

667 Enhanced Golic+: Gene targeting with 100% recovery in Drosophila male germ cells

Chen, H.-M.; Yao, X.; Ren, Q.; Chang, C.-C.; Liu, L.-Y.; Lee, T.

10.1101/681874 — genetics — Posted on 2019-06-24

668 Dissociable neural systems for unconditioned acute and sustained fear

Hudson, M.; Seppälä, K.; Putkinen, V.; Sun, L.; Glerean, E.; Karjalainen, T.; Hirvonen, J.; Nummenmaa, L.

10.1101/676650 — neuroscience — Posted on 2019-06-24

669 Organotypic slice culture model demonstrates interneuronal spreading of alpha-synuclein aggregates

Elfarrash, S.; Jensen, N. M.; Ferreira, N.; Betzer, C.; Thevathasan, J. V.; Diekmann, R.; Adel, M.; Omar, N. M.; Boraie, M.; Gad, S.; Ries, J.; Kirik, D.; Nabavi, S.; Jensen, P. H.

10.1101/681064 — neuroscience — Posted on 2019-06-24

670 LncRNA-dependent nuclear stress bodies promote intron retention through SR protein phosphorylation

Hirose, T.; Ninomiya, K.; Adachi, S.; Natsume, T.; Iwakiri, J.; Terai, G.; Asai, K.

10.1101/681056 — molecular biology — Posted on 2019-06-24

671 miR-92a-3p controls cell cycle progression in zebrafish

Presslauer, C.; Bizuayehu, T.; Fernandes, J.; Babiak, I.

10.1101/680991 — developmental biology — Posted on 2019-06-24

672 A novel decellularization method to produce brain scaffolds

Granato, A. E. C.; da Cruz, E. F.; Rodrigues-Junior, D. M.; Mosini, A. C.; Cheffer, A.; Porcionatto, M.; Ulrich, H.

10.1101/680702 — cell biology — Posted on 2019-06-24

673 Augmentation of Virtual Endoscopic Images with Intra-operative Data using Content-Nets

Esteban Lansaque, A.; Sanchez Ramos, C.; Borras, A.; Gil Resina, D.

10.1101/681825 — bioengineering — Posted on 2019-06-24

674 TulsiPIN: an interologous protein interactome of Ocimum tenuiflorum

Singh, V.; Singh, G.; Singh, V.

10.1101/680025 — systems biology — Posted on 2019-06-24

675 Hydrological Extremes and their Association with ENSO Phases in Ethiopia

Tolcha, A.

10.1101/681528 — scientific communication and education — Posted on 2019-06-24

676 Intramolecular Communication and Allosteric Sites in Enzymes Unraveled by Time-Dependent Linear Response Theory

Huang, B.-C.; Chang-Chein, C.-H.; Yang, L.-W.

10.1101/677617 — biophysics — Posted on 2019-06-24

677 The efficacy and safety of Momordica charantia L. in animal models of type 2 diabetes mellitus; A systematic review and meta-analysis

Peter, E. L.; Nagendrappa, P. B.; Kaligirwa, A.; Ogwang, P. E.; Sesaazi, C. D.

10.1101/681494 — pharmacology and toxicology — Posted on 2019-06-24

678 Original research. Inhibition of Polymerase Chain Reaction: Pathogen-Specific Controls are better than Human Gene Amplification

Roux, G.; Ravel, C.; Varlet-Marie, E.; Jendrowiak, R.; Bastien, P.; Sterkers, Y.

10.1101/681585 — microbiology — Posted on 2019-06-24

679 Degradation of miR-466d-3p by JEV NS3 facilitates viral replication and IL-1β expression

Jiang, H.; Zhao, C.; Bai, Z.; Meng, Y.; Qin, T.; Wang, X.; Wang, G.; Cui, M.; Ye, J.; Cao, S.; Li, G.; yang, y.

10.1101/681569 — microbiology — Posted on 2019-06-24

680 A novel imaging biomarker for survival prediction in EGFR-mutated NSCLC patients treated with TKI

Collin, A.; Groza, V.; Missenard, L.; Chomy, F.; Colin, T.; Palussiere, J.; Saut, O.

10.1101/681577 — cancer biology — Posted on 2019-06-24

681 A tripartite flip-flop sleep circuit switches sleep states

Maluck, E.; Busack, I.; Masurat, F.; Besseling, J.; Turek, M.; Bringmann, H.

10.1101/681536 — neuroscience — Posted on 2019-06-24

682 Drosophila insulin-like peptide 2 mediates dietary regulation of sleep intensity

Brown, E.; Shah, K.; Faville, R.; Kottler, B.; Keene, A. C.

10.1101/681551 — neuroscience — Posted on 2019-06-24

Pushchina, E. V.; Stukaneva, M. E.; Varaksin, A. A.

10.1101/681445 — neuroscience — Posted on 2019-06-24

684 Decoding task-specific cognitive states with slow, directed functional networks in the human brain

Sridharan, D.; Ajmera, S.; Jain, H.; Sundaresan, M.

10.1101/681544 — neuroscience — Posted on 2019-06-24

685 Do atmospheric events explain the arrival of an invasive ladybird (Harmonia axyridis) in the UK?

Siljamo, P.; Ashbrook, K.; Comont, R. F.; Skjoth, C. A.

10.1101/681452 — ecology — Posted on 2019-06-24

686 Exploring the role of the various methionine residues in the Escherichia coli CusB adapter protein

Meir, A.; Walke, G.; Schwerdtfeger, F.; Gevorkyan Airapetov, L.; Ruthstein, S.

10.1101/681486 — biophysics — Posted on 2019-06-24

687 Gaze and Movement Assessment (GaMA): Inter-site validation of a visuomotor upper limb functional protocol

Williams, H. E.; Chapman, C. S.; Pilarski, P. M.; Vette, A. H.; Hebert, J. S.

10.1101/681437 — neuroscience — Posted on 2019-06-24

688 The role of cultural norms in shaping attitudes towards amphibians in Cape Town, South Africa.

Brom, P.; Anderson, P.; Channing, A.; Underhill, L. G.

10.1101/681403 — ecology — Posted on 2019-06-24

689 Bacterial protein interaction networks: connectivity is ruled by gene conservation, essentiality and function

Giansanti, A.; Dilucca, M.; Cimini, G.

10.1101/681395 — systems biology — Posted on 2019-06-24

690 Microhomology-mediated end joining drives complex rearrangements and over expression of MYC and PVT1 in multiple myeloma

Mikulasova, A.; Ashby, C.; Tytarenko, R. G.; Qu, P.; Rosenthal, A.; Dent, J. A.; Ryan, K. R.; Bauer, M. A.; Wardell, C. P.; Hoering, A.; Mavrommatis, K.; Trotter, M.; Deshpande, S.; Yaccoby, S.; Tian, E.; Keats, J.; Auclair, D.; Jackson, G. H.; Davies, F. E.; Thakurta, A.; Morgan, G. J.; Walker, B. A.

10.1101/515106 — cancer biology — Posted on 2019-06-24

691 Mathematical relations between measures of brain connectivity estimated from electrophysiological recordings for Gaussian distributed data

Nolte, G.; Galindo-Leon, E.; LI, Z.; Liu, X.; Engel, A. K.

10.1101/680678 — neuroscience — Posted on 2019-06-24

692 Machine Learning based histology phenotyping to investigate epidemiologic and genetic basis of adipocyte morphology and cardiometabolic traits

Glastonbury, C. A.; Pulit, S. L.; Honecker, J.; Censin, J. C.; Laber, S.; Yaghootkar, H.; Rahmioglu, N.; Pastel, E.; Kos, K.; Pitt, A.; Hudson, M.; Nellaker, C.; Beer, N. L.; Hauner, H.; Becker, C. M.; Zondervan, K. T.; Frayling, T. M.; Claussnitzer, M.; Lindgren, C. M.

10.1101/680637 — genomics — Posted on 2019-06-24

693 Acoustic Measures of Prosody in Right-Hemisphere Damage: A Systematic Review and Meta-Analysis

Weed, E.; Fusaroli, R.

10.1101/676734 — bioinformatics — Posted on 2019-06-24

694 Accurate assembly of the olive baboon (Papio anubis) genome using long-read and Hi-C data

Batra, S. S.; Levy-Sakin, M.; Robinson, J.; Guillory, J.; Durinck, S.; Kwok, P.-Y.; Cox, L. A.; Seshagiri, S.; Song, Y. S.; Wall, J. D.

10.1101/678771 — genomics — Posted on 2019-06-24

695 NON-RANDOM TIMING OF ECOLOGICAL SHIFTS ON CARIBBEAN CORAL REEFS SUGGESTS REGIONAL CAUSES OF CHANGE

Precht, W.; Aronson, R. B.; Gardner, T. A.; Gill, J. A.; Hawkins, J. P.; Hernandez-Delgado, E. A.; Jaap, W. C.; McClanahan, T. R.; McField, M. D.; Murdoch, T. J. T.; Nugues, M. M.; Roberts, C. M.; Schelten, C. K.; Watkinson, A. R.; Cote, I. M.

10.1101/672121 — ecology — Posted on 2019-06-24

696 Rationally inattentive intertemporal choice

Gershman, S. J.; Bhui, R.

10.1101/680652 — animal behavior and cognition — Posted on 2019-06-24

697 Genomic loci susceptible to systematic sequencing bias in clinical whole genomes

Freeman, T. M.; Wang, D.; Harris, J.

10.1101/679423 — bioinformatics — Posted on 2019-06-23

698 Left ventricular geometry during unloading and the end-systolic pressure volume relationship: Measurement with a modified real-time MRI-based method in normal sheep.

Giao, D. M.; Wang, Y.; Rojas, R.; Takaba, K.; Badathala, A.; Spaulding, K. A.; Soon, G.; Zhang, Y.; Wang, V. Y.; Haraldsson, H.; Liu, J.; Saloner, D.; Ge, L.; Guccione, J. M.; Wallace, A. W.; Ratcliffe, M. B.

10.1101/562017 — bioengineering — Posted on 2019-06-23

699 Modulation of DNA polymerase IV activity by UmuD and RecA* observed by single-molecule time-lapse microscopy

Henrikus, S. S.; McGarth, A. E.; Jergic, S.; Ritger, M. L.; Pham, P. T.; Wood, E. A.; Goodman, M. F.; Cox, M. M.; van Oijen, A. M.; Ghodke, H.; Robinson, A.

10.1101/620195 — microbiology — Posted on 2019-06-23

700 An explicit formula for a dispersal kernel in a patchy landscape

Beykzadeh, A.; Watmough, J.

10.1101/680256 — ecology — Posted on 2019-06-23

701 Deep neural network affinity model for BACE inhibitors in D3R Grand Challenge 4

Wang, B.; Ng, H. L.

10.1101/680306 — bioinformatics — Posted on 2019-06-23

702 RNA polymerase active centre compensates for the absence of transcription proofreading factors in Cyanobacteria

Riaz-Bradley, A.; James, K.; Yuzenkova, Y.

10.1101/680546 — biochemistry — Posted on 2019-06-23

703 Proteolytic queues at ClpXP increase antibiotic tolerance

Deter, H. S.; Abualrahi, A. H.; Jadhav, P.; Schweer, E. K.; Ogle, C. T.; Butzin, N.

10.1101/680504 — synthetic biology — Posted on 2019-06-23

704 Genome-wide sequence-based genotyping supports a nonhybrid origin of Castanea alabamensis

Perkins, M. T.; Zhebentyayeva, T.; Sisco, P. H.; Craddock, J. H.

10.1101/680371 — plant biology — Posted on 2019-06-23

705 De novo Transcriptome Characterization of Royal Iris (Iris section Oncocyclus) and Identification of Flower Development Genes

Bar-Lev, Y.; Senden, E.; Pasjmanik-Chor, M.; Sapir, Y.

10.1101/680363 — plant biology — Posted on 2019-06-23

706 Increasing pulse widths and intensity increase the efficacy of high frequency rTMS in inducing excitatory aftereffects.

Halawa, I.; Reichert, K.; Sommer, M.; Paulus, W.

10.1101/652578 — neuroscience — Posted on 2019-06-23

707 Object-Based Cognitive Map in the Human Hippocampus and Medial Prefrontal Cortex

Zhang, B.; Naya, Y.

10.1101/680199 — neuroscience — Posted on 2019-06-23

708 Pulmonary natural killer cells control neutrophil intravascular motility and response to acute inflammation

Secklehner, J.; De Filippo, K.; Mackey, J. B. G.; Vuononvirta, J.; Raffo Iraolagoitia, X. L.; McFarlane, A. J.; Neilson, M.; Headley, M. B.; Krummel, M. F.; Guerra, N.; Carlin, L.

10.1101/680611 — immunology — Posted on 2019-06-23

709 Maternal stress promotes offspring growth without oxidative costs in wild red squirrels

Dantzer, B.; van Kesteren, F.; Westrick, S. E.; Boutin, S.; McAdam, A. G.; Lane, J. E.; Gillespie, R.; Majer, A.; Haussmann, M.; Monaghan, P.

10.1101/680421 — evolutionary biology — Posted on 2019-06-23

710 Beach environmental DNA fills gaps in photographic biomonitoring to track spatiotemporal community turnover across 82 phyla

Meyer, R. S.; Schweizer, T. M.; Kwan, W.-Y.; Curd, E. E.; Wall, A.; Pentcheff, D.; Wetzer, R.; Beraut, E.; Young, A.; Johnson, R.; Wayne, R. K.

10.1101/680272 — ecology — Posted on 2019-06-23

711 Development and testing of a novel Killer-Rescue self-limiting gene drive system in Drosophila melanogaster

Webster, S. H.; Vella, M. R.; Scott, M.

10.1101/680629 — genetics — Posted on 2019-06-23

712 Using Automated Detection and Classification of Interictal HFOs to Improve the Identification of Epileptogenic Zones in Preparation for Epilepsy Surgery

Farahmand, S.; Sobayo, T.; Mogul, D.

10.1101/680280 — bioengineering — Posted on 2019-06-23

713 Screening of clustered regulatory elements reveals functional cooperating dependencies in Leukemia.

Benbarche, S.; Lopez, C. K.; Salataj, E.; Thirant, C.; Laiguillon, M.-C.; Aid, Z.; Lecourt, S.; Antonini, M.; Pardieu, B.; Petit, A.; Puissant, A.; Chaumeil, J.; Mercher, T.; Lobry, C.

10.1101/680165 — cancer biology — Posted on 2019-06-23

714 Deciphering the transcriptomic insight during organogenesis in castor (Ricinus communis L.), jatropha (Jatropha curcas L.) and sunflower (Helianthus annuus L.)

Puvvala, S. S.; Muddanuru, T.; Thangella, P. A.; O, A. K.; Chakravartty, N.; Gupta, S.; Vettath, V. K.; Sri Katta, K. M. A. V.; Lekkala, S. P.; Kuriakose, B.; Mulpuri, S.; Lachagari, V. B. R.

10.1101/679027 — plant biology — Posted on 2019-06-23

715 The landscape of myeloid and astrocyte phenotypes in acute multiple sclerosis lesions

Park, C.; Ponath, G.; Levine-Ritterman, M.; Bull, E.; Swanson, E. C.; De Jager, P. L.; Segal, B. M.; Pitt, D.

10.1101/632554 — immunology — Posted on 2019-06-23

716 Genomics of Egyptian Healthy Volunteers: The EHVol Study

Aguib, Y.; Allouba, M.; Afify, A.; Halawa, S.; ElKhateb, M.; Sous, M.; Galal, A.; Abdelrahman, E.; Shehata, N.; El Sawy, A.; Maghawry, M.; Anwer, S.; Kamel, O.; El-Mozy, W.; Khedr, H.; Essam, A.; Thabet, N.; Theotokis, P.; Buchan, R.; Govind, R.; Whiffin, N.; Walsh, R.; Aguib, H.; Elguindy, A.; Cook, S. A.; Barton, P. J.; Ware, J.; Yacoub, M.

10.1101/680520 — genomics — Posted on 2019-06-23

717 A multimodal framework for detecting direct and indirect gene-gene interactions from large expression compendium

Zhang, L.; Chen, J.; Li, S.

10.1101/680116 — bioinformatics — Posted on 2019-06-23

718 Towards Quantitative Imaging Biomarkers of Tumor Dissemination: a Multi-scale Parametric Modeling of Multiple Myeloma

Piraud, M.; Wennmann, M.; Kintzele, L.; Hillengass, J.; Keller, U.; Langs, G.; Weber, M.-A.; Menze, B.

10.1101/613869 — bioinformatics — Posted on 2019-06-23

719 Integrated analysis of different non-coding features across the Sox2 locus implicates a diencephalic enhancer in adult brain expression.

Carter, D. A.

10.1101/680082 — neuroscience — Posted on 2019-06-23

720 Human reproductive system microbiomes exhibited significantly different heterogeneity scaling with gut microbiome, but the intra-system scaling is invariant

Ma, Z.

10.1101/680355 — evolutionary biology — Posted on 2019-06-23

721 On a mechanistic process of macroparasite aggregation

Rabajante, J. F.; Gokhale, C. S.; Anzia, E. L.

10.1101/680041 — ecology — Posted on 2019-06-23

722 Killer Immunoglobulin-like Receptor-Ligand Interactions Predict Clinical Outcomes Following Unrelated Donor Transplants

Krieger, E. O.; Sabo, R.; Moezzi, S.; Cain, C.; Roberst, C.; Kimball, P.; Chesney, A.; McCarty, J.; Keating, A.; Romee, R.; Wiedl, C.; Qayyum, R.; Toor, A.

10.1101/680298 — cancer biology — Posted on 2019-06-23

723 The 14q32.31 DLK1-DIO3 MIR300 tumor suppressor promotes leukemogenesis by inducing cancer stem cell quiescence and inhibiting NK cell anti-cancer immunity.

Silvestri, G.; Trotta, R.; Stramucci, L.; Ellis, J. J.; Harb, J. G.; Neviani, P.; Wang, S.; Eisfeld, A.-K.; Walker, C.; Zhang, B.; Srutova, K.; Gambacorti-Passerini, C.; Pineda, G.; Jamieson, C. H. M.; Stagno, F.; Vigneri, P.; Nteliopoulos, G.; May, P.; Reid, A.; Garzon, R.; Roy, D. C.; Moutuou, M.-M.; Guimond, M.; Hokland, P.; Deininger, M.; Fitzgerald, G.; Harman, C.; Dazzi, F.; Milojkovic, D.; Apperley, J. F.; Marcucci, G.; Qi, J.; Machova-Polakova, K.; Zou, Y.; Fan, X.; Baer, M. R.; Calabretta, B.; Perrotti, D.

10.1101/680108 — cancer biology — Posted on 2019-06-23

724 Polyhyrdoxybutyrate production by Bacillus marcorestinctum using a Cheaper substrate and its electrospinned blends with polymer

Narayankumar, S.; Mol, N.; Krishnaswamy, V. g.

10.1101/680124 — microbiology — Posted on 2019-06-23

725 The expanded BXD family of mice: A cohort for experimental systems genetics and precision medicine

10.1101/672097 — genomics — Posted on 2019-06-23

726 Perturbation of the titin/MURF1 signaling complex is associated with hypertrophic cardiomyopathy in a fish model and in human patients.

Higashikuse, Y.; Mittal, N.; Arimura, T.; Yoon, S. H.; Oda, M.; Enomoto, H.; Kaneda, R.; Hattori, F.; Suzuki, T.; Kawakami, A.; Gasch, A.; Furukawa, T.; Labeit, S.; Fukuda, K.; Kimura, A.; Makino, S.

10.1101/680579 — developmental biology — Posted on 2019-06-23

727 Assembly of a persistent apical actin network by the formin Frl/Fmnl tunes epithelial cell deformability

Dehapiot, B.; Clement, R.; Gazso-Gerhat, G.; Philippe, J.-M.; Lecuit, T.

10.1101/680033 — developmental biology — Posted on 2019-06-23

728 Unbiased Assessment of H-STS cells as high-fidelity models for gastro-enteropancreatic neuroendocrine tumor drug mechanism of action analysis

Alvarez, M. J.; Yan, P.; Alpaugh, M. L.; Bowden, M.; Sicinska, E.; Zhou, C. W.; Karan, C.; Realubit, R. B.; Mundi, P. S.; Grunn, A.; Jäger, D.; Chabot, J. A.; Fojo, A. T.; Oberstein, P. E.; Hibshoosh, H.; Milsom, J. W.; Kulke, M. H.; Loda, M.; Chiosis, G.; Reidy-Lagunes, D. L.; Califano, A.

10.1101/677435 — cancer biology — Posted on 2019-06-23

729 Single-Cell Data Analysis Using MMD Variational Autoencoder for a More Informative Latent Representation

Zhang, C.

10.1101/613414 — bioinformatics — Posted on 2019-06-23

730 Cardiac contraction velocity has evolved to match heart rate with body size through variation in β-cardiac myosin sequence.

Johnson, C. A.; McGreig, J. E.; Vera, C. D.; Mulvihill, D. P.; Ridout, M.; Leinwand, L. A.; Wass, M. N.; Geeves, M. A.

10.1101/680413 — biochemistry — Posted on 2019-06-23

731 Nonlinear Interaction Decomposition (NID): A Method for Separation of Cross-Frequency Coupled Sources in Human Brain

Jamshidi Idaji, M.; Mueller, K.-R.; Nolte, G.; Maess, B.; Villringer, A.; Nikulin, V. V.

10.1101/680397 — neuroscience — Posted on 2019-06-23

732 Distinct gene expression patterns in vector-residing Leishmania infantum identify parasite stage-enriched markers

Coutinho-Abreu, I. V.; Serafim, T. D.; Meneses, C.; Kamhawi, S.; Oliveira, F.; Valenzuela, J. G.

10.1101/679712 — microbiology — Posted on 2019-06-23

733 Mouse T cell priming is enhanced by maturation-dependent stiffening of the dendritic cell cortex

Blumenthal, D.; Chandra, V.; Burkhardt, J. K.

10.1101/680132 — immunology — Posted on 2019-06-23

734 PKMYT1 is a computationally predicted target for kidney cancer

Torre, D.; Fernandez, N. F.; Ma'ayan, A.

10.1101/677245 — bioinformatics — Posted on 2019-06-23

735 Security and Privacy Concerns Regarding Genetic Data in Mobile Health Record Systems: An Empirical Study from Turkey

Ozkan, O.; Aydin Son, Y.; Aydinoglu, A. U.

10.1101/678912 — bioinformatics — Posted on 2019-06-23

736 In Depth Flow Inspection Using Dynamic Laser Speckle Temporal Statistics

Golberg, M.; Califa, R.; Polani, S.; Garcia, J.; Zalevsky, Z.

10.1101/680330 — bioengineering — Posted on 2019-06-23

737 Tonotopic and multisensory organization of the mouse dorsal inferior colliculus revealed by two-photon imaging

Wong, A. B.; Borst, J. G. G.

10.1101/680603 — neuroscience — Posted on 2019-06-23

738 Texture-Elicited Vibrations Stretch Or Contract Systematically Depending On Scanning Speed

Greenspon, C.; McLellan, K.; Lieber, J. D.; Bensmaia, S. J.

10.1101/680322 — neuroscience — Posted on 2019-06-23

739 Persistence and plasticity of T follicular memory cells

Künzli, M.; Schreiner, D. P.; Pereboom, T.; Swarnalekha, N.; Lötscher, J.; Ertuna, Y. I.; Roux, J.; Geier, F.; Hess, C.; Taylor, J. T.; King, C. G.

10.1101/677559 — immunology — Posted on 2019-06-23

740 Transcriptome responses of intestinal epithelial cells induced by membrane vesicles of Listeria monocytogenes unveil novel insights into the host-pathogen cross talk

Karthikeyan, R.; Gayathri, P.; Gunasekaran, P.; Jagannadham, M. V.; Rajendhran, J.

10.1101/679951 — microbiology — Posted on 2019-06-23

741 Shotgun Metagenomics of 361 elderly women reveals gut microbiome change in bone mass loss

Wang, Q.; Zhao, H.; Sun, Q.; Li, X.; Chen, J.; Wang, Z.; Ju, Y.; Jie, Z.; Guo, R.; Liang, Y.; Sun, X.; Zheng, H.; Zhang, T.; Xiao, L.; Xu, X.; Yang, H.; Peng, S.; Jia, H.

10.1101/679985 — microbiology — Posted on 2019-06-23

742 Deep data mining reveals variable abundance and distribution of microbial reproductive manipulators within and among diverse host species

Medina, P.; Russell, S.; Corbett-Detig, R.

10.1101/679837 — evolutionary biology — Posted on 2019-06-23

743 Brain state stability during working memory is explained by network control theory, modulated by dopamine D1/D2 receptor function, and diminished in schizophrenia

Braun, U.; Harneit, A.; Pergola, G.; Menara, T.; Schaefer, A.; Betzel, R. F.; Zang, Z.; Schweiger, J. I.; Schwarz, K.; Chen, J.; Blasi, G.; Bertolino, A.; Durstewitz, D.; Pasqualetti, F.; Schwarz, E.; Meyer-Lindenberg, A.; Bassett, D. S.; Tost, H.

10.1101/679670 — neuroscience — Posted on 2019-06-23

744 Predicting mutations in HIV-1 Gag: Insights from in silico and an in vitro BSL2 platform on thermostability and allosteric effects

Yap, P.; Koh, D. W.-S.; Su, C. T.-T.; Chan, K.-F.; Gan, S. K.-E.

10.1101/679852 — microbiology — Posted on 2019-06-23

745 Fitness and productivity increase with ecotypic diversity among E. coli evolved in a simple, constant environment

Yang, D.-D.; Alexander, A.; Kinnersley, M.; Cook, E.; Caudy, A.; Rosebrock, A.; ROSENZWEIG, F.

10.1101/679969 — microbiology — Posted on 2019-06-23

746 Computational and experimental performance of CRISPR homing gene drive strategies with multiplexed gRNAs

Champer, S. E.; Oh, S. Y.; Liu, C.; Wen, Z.; Clark, A. G.; Messer, P. W.; Champer, J.

10.1101/679902 — genetics — Posted on 2019-06-23

747 Tumor fitness, immune exhaustion and clinical outcomes: impact of immune checkpoint inhibitors

Bubie, A.; Kozlova, E. G.; Akers, N.; Villanueva, A.; Losic, B.

10.1101/679886 — cancer biology — Posted on 2019-06-23

748 Criticality of plasma membrane lipids reflects activation state of macrophage cells

Cammarota, E.; Soriani, C.; Taub, R.; Morgan, F.; Sakai, J.; Veatch, S.; Bryant, C. E.; Cicuta, P.

10.1101/680157 — biophysics — Posted on 2019-06-23

749 Differential Treatment Benefit Prediction For Treatment Selection in Depression: A Deep Learning Analysis of STAR*D and CO-MED Data

Mehltretter, J.; Fratila, R.; Benrimoh, D.; Kapelner, A.; Perlman, K.; Snook, E.; Israel, S.; Miresco, M.; Turecki, G.

10.1101/679779 — neuroscience — Posted on 2019-06-23

750 Multi-session visual cortex transcranial random noise stimulation in adults with amblyopia

Donkor, R.; Silva, A. E.; Teske, C.; Wallis-Duffy, M.; Thompson, B.

10.1101/679662 — neuroscience — Posted on 2019-06-23

751 Comparison of marker selection methods for high throughput scRNA-seq data

Vargo, A. H.; Gilbert, A. C.

10.1101/679761 — genomics — Posted on 2019-06-23

752 Sustained Co-evolution in a Stochastic Model of the Cancer-Immune Interaction

George, J. T.; Levine, H.

10.1101/679746 — evolutionary biology — Posted on 2019-06-23

753 A revised 1.6 Å structure of the GTPase domain of the Parkinson’s disease-associated protein LRRK2 provides insights into mechanisms

Wu, C.-X.; Liao, J.; Park, Y.; Hoang, N. C.; Engel, V. A.; Wan, L.; Oh, M.; Sanishvili, R.; Takagi, Y.; Johnson, S. M.; Wang, M.; Federici, M.; Nichols, R. J.; Bellina, A.; Reed, X.; Cookson, M. R.; Hoang, Q. Q.

10.1101/676627 — biochemistry — Posted on 2019-06-23

754 Clinical diagnosis of single-gene disorders and chromosomal abnormalities based on BGISEQ-500 platform

Liu, Y.; Mao, L.; Wei, X.; Man, J.; Zhang, W.; Wang, L.; Li, L.; Sun, Y.; Li, W.; Zhai, T.; Guo, X.; Du, L.; Huang, J.; Li, H.; Wan, Y.; Huang, H.

10.1101/675991 — genomics — Posted on 2019-06-23

755 Transcriptional and Progesterone Receptor Binding Profiles of the Human Endometrium Reveal Important Pathways and Regulators in the Epithelium During the Window of Implantation

Chi, R.-p. A.; Wang, T.; Adams, N. R.; Wu, S.-p.; Young, S. L.; Spencer, T. E.; DeMayo, F. J.

10.1101/680181 — developmental biology — Posted on 2019-06-23

756 In vitro Reconstitution Unveils the Phospho-regulated Ska-Ndc80 Macro-complex

Zhan, Q.; Hu, L.; Chen, Y.; Tian, W.; liu, h.

10.1101/680314 — cell biology — Posted on 2019-06-23

757 Repurposing protein degradation for optogenetic modulation of protein activities

Mondal, P.; Krishnamurthy, V. V.; Sharum, S. R.; Haack, N.; Zhang, K.

10.1101/680207 — bioengineering — Posted on 2019-06-23

758 Genetic screens in isogenic mammalian cell lines without single cell cloning

DeWeirdt, P. C.; Sanson, K. R.; Hanna, R. E.; Hegde, M.; Sangree, A. K.; Strand, C.; Persky, N. S.; Doench, J. G.

10.1101/677385 — genetics — Posted on 2019-06-23

759 Sustained exposure to trypsin causes cells to transition into a state of reversible stemness that is amenable to transdifferentiation

Sharma, M.; Kumar, R.; Sharma, S.; Thomas, B.; Kapatia, G.; Singh, G.; Bal, A.; Ram, J.; Bhasin, M.; Guptasarma, P.; Luthra-Guptasarma, M.

10.1101/679928 — cell biology — Posted on 2019-06-23

760 LFMD: a new likelihood-based method to detect low-frequency mutations without molecular tags

Ye, R.; Ruan, J.; Zhuang, X.; Qi, Y.; An, Y.; Xu, J.; Mak, T.; Liu, X.; Yang, H.; Xu, X.; Baum, L.; Nie, C.; Sham, P. C.

10.1101/617381 — bioinformatics — Posted on 2019-06-22

761 Effector prediction and characterization in the oomycete pathogen Bremia lactucae reveal host-recognized WY domain proteins that lack the canonical RXLR motif

Wood, K. J.; Nur, M.; Gil, J.; Fletcher, K.; Lakeman, K.; Gothberg, A.; Khuu, T.; Kopetzky, J.; Pandya, A.; Pel, M.; Michelmore, R.

10.1101/679787 — plant biology — Posted on 2019-06-22

762 Elizabethkingia anophelis response to iron stress: physiologic, genomic, and transcriptomic analyses

Chen, S.; Johnson, B. K.; Yu, T.; Nelson, B.; Walker, E.

10.1101/679894 — microbiology — Posted on 2019-06-22

763 The effect of bioRxiv preprints on citations and altmetrics

Fraser, N.; Momeni, F.; Mayr, P.; Peters, I.

10.1101/673665 — scientific communication and education — Posted on 2019-06-22

764 A receptor for herbivore-associated molecular patterns mediates plant immunity

Steinbrenner, A. D.; Munoz-Amatriain, M.; Venegas, J. M. A.; Lo, S.; Shi, D.; Holton, N.; Zipfel, C.; Abagyan, R.; Huffaker, A.; Close, T. J.; Schmelz, E. A.

10.1101/679803 — plant biology — Posted on 2019-06-22

765 The autoregulation of Escherichia coli RelA through intramolecular interactions

Turnbull, K. J.; Roghanian, M.

10.1101/680231 — molecular biology — Posted on 2019-06-22

766 Dissection of ligand-CDK8/CycC unbinding free energy barriers and kinetics by molecular simulations

Tang, Z.; Chen, S.-H.; Chang, C.-e. A.

10.1101/169607 — biophysics — Posted on 2019-06-22

767 A diencephalic pathway for movement initiation and rescue of Parkinsonian symptoms

Watson, G. D. R.; Hughes, R. N.; Petter, E. A.; Yin, H.

10.1101/395277 — neuroscience — Posted on 2019-06-22

768 Multidimensional profiling of drug-treated cells by Imaging Mass Cytometry

Bouzekri, A.; Esch, A.; Ornatsky, O.

10.1101/549592 — cell biology — Posted on 2019-06-22

769 EpiSAFARI: Sensitive detection of valleys in epigenetic signals for enhancing annotations of functional elements

Harmanci, A. O.; Serin Harmanci, A.; Swaminathan, J.; Gopalakrishnan, V.

10.1101/579847 — bioinformatics — Posted on 2019-06-22

770 SynQuant: An Automatic Tool to Quantify Synapses from Microscopy Images

Wang, Y.; Wang, C.; Ranefall, P.; Broussard, G.; Wang, Y.; Shi, G.; Lyu, B.; Wang, Y.; Tian, L.; Yu, G.

10.1101/538769 — neuroscience — Posted on 2019-06-22

771 Partial coherence and frustration in self-organizing spherical grids

Stella, F.; Urdapilleta, E.; Luo, Y.; Treves, A.

10.1101/560318 — neuroscience — Posted on 2019-06-22

772 Genome-wide association study of plasma triglycerides, phospholipids and relation to cardio-metabolic risk factors

Demirkan, A.; Pool, R.; Deelen, J.; Beekman, M.; Liu, J.; Harms, A. C.; Varhoorst, A.; Hagenbeek, F. A.; Willemsen, G.; Verhoeven, A.; Amin, N.; Willems van Dijk, K.; Hankemeier, T.; Boomsma, D. I.; Slagboom, E.; van Duijn, C. M.

10.1101/621334 — epidemiology — Posted on 2019-06-22

773 The temporal transcription factor E93 controls dynamic enhancer activity and chromatin accessibility during development

Nystrom, S. L.; Niederhuber, M. J.; McKay, D. J.

10.1101/679753 — developmental biology — Posted on 2019-06-22

774 Parasitic worm-derived ES-62 promotes health- and life-span in high calorie diet-fed mice

Crowe, J.; Lumb, F. E.; Doonan, J.; Broussard, M.; Tarafdar, A.; Pineda, M. A.; Landabaso, C.; Mulvey, L.; Hoskisson, P. A.; Babayan, S.; Selman, C.; Harnett, W.; Harnett, M. M.

10.1101/622753 — immunology — Posted on 2019-06-22

775 Regression Analysis of Dependent Binary Data for Estimating Disease Etiology from Case-Control Studies

Wu, Z.; Chen, I.

10.1101/672808 — epidemiology — Posted on 2019-06-22

776 Higher rostral locus coeruleus integrity is associated with better memory performance in older adults

Dahl, M. J.; Mather, M.; Duezel, S.; Bodammer, N. C.; Lindenberger, U.; Kuehn, S.; Werkle-Bergner, M.

10.1101/332098 — neuroscience — Posted on 2019-06-22

777 Genomic loci susceptible to systematic sequencing bias in clinical whole genomes

Freeman, T. M.; Wang, D.; Harris, J.

10.1101/679423 — bioinformatics — Posted on 2019-06-22

778 Urbanization impacts apex predator gene flow but not genetic diversity across an urban-rural divide

Trumbo, D. R.; Salerno, P. E.; Logan, K. A.; Aldredge, M.; Gagne, R. B.; Kozakiewicz, C. P.; Kraberger, S.; Fountain-Jones, N.; Craft, M. E.; Carver, S.; Ernest, H. B.; Crooks, K.; VandeWoude, S.; Funk, W. C.

10.1101/679720 — genomics — Posted on 2019-06-22

779 Spinal V3 interneurons and left-right coordination in mammalian locomotion

Danner, S. M.; Zhang, H.; Shevtsova, N. A.; Borowska, J.; Rybak, I. A.; Zhang, Y.

10.1101/679654 — neuroscience — Posted on 2019-06-22

780 PTMProphet: Fast and Accurate Mass Modification Localization for the Trans-Proteomic Pipeline

Shteynberg, D. D.; Deutsch, E. W.; Campbell, D. S.; Hoopmann, M. R.; Kusebauch, U.; Lee, D.; Mendoza, L.; Midha, M.; Sun, Z.; Whetton, A. D.; Moritz, R. L.

10.1101/679845 — bioinformatics — Posted on 2019-06-22

781 POL30 alleles in Saccharomyces cerevisiae reveal complexities of the cell cycle and ploidy on heterochromatin assembly

Brothers, M.; Rine, J.

10.1101/679829 — genetics — Posted on 2019-06-22

782 Molecular profiling predicts meningioma recurrence and reveals loss of DREAM complex repression in aggressive tumors

Patel, A. J.; Wan, Y.-W.; Al-Ouran, R.; Revelli, J.-P.; Cardenas, M. F.; Oneissi, M.; Xi, L.; Jalali, A.; Magnotti, J.; Muzny, D. M.; Doddapaneni, H.; Sebastian, S.; Heck, K. A.; Goodman, J. C.; Gopinath, S. P.; Liu, Z.; Rao, G.; Plon, S. E.; Yoshor, D.; Wheeler, D. A.; Zoghbi, H. Y.; Klisch, T. J.

10.1101/679480 — cancer biology — Posted on 2019-06-22

783 NMRdock: Lightweight and Modular NMR Processing

East, K. W.; Leith, A.; Ragavendran, A.; Delaglio, F.; Lisi, G. P.

10.1101/679688 — biophysics — Posted on 2019-06-22

784 Distinguishing coalescent models - which statistics matter most?

Freund, F.; Siri-Jegousse, A.

10.1101/679498 — evolutionary biology — Posted on 2019-06-22

785 Insights from a general, full-likelihood Bayesian approach to inferring shared evolutionary events from genomic data: Inferring shared demographic events is challenging

Oaks, J. R.; L'Bahy, N.; Cobb, K. A.

10.1101/679878 — evolutionary biology — Posted on 2019-06-22

786 Regular Architecture (RegArch): A standard expression language for describing protein architectures

Ortega, D. R.; Jensen, G. J.

10.1101/679910 — bioinformatics — Posted on 2019-06-22

787 Cell-in-the-loop pattern formation with optogenetically emulated cell-to-cell signaling

Perkins, M. L.; Benzinger, D.; Arcak, M.; Khammash, M.

10.1101/679597 — synthetic biology — Posted on 2019-06-22

788 Integrative omics analysis of Pseudomonas aeruginosa virus PA5oct highlights the molecular complexity of jumbo phages

Lood, C.; Danis-Wlodarczyk, K.; Blasdel, B.; Jang, H. B.; Vandenheuvel, D.; Briers, Y.; Noben, J.-P.; van Noort, V.; Drulis-Kawa, Z.; Lavigne, R.

10.1101/679506 — molecular biology — Posted on 2019-06-22

789 Artisanal and farmers bread making practices differently shape fungal species diversity in French sourdoughs

Michel, E.; Masson, E.; Bubbendorf, S.; Lapicque, L.; Legrand, J.; Guezenec, S.; Nidelet, T.; Marlin, T.; Rue, O.; Onno, B.; Sicard, D.

10.1101/679472 — ecology — Posted on 2019-06-22

790 Bactericidal efficiency and mechanism of specifically targeted antimicrobial peptides optimized based on structural and functional relationships

Tan, P.; Lai, Z.; Zhu, Y.; Shao, C.; Usman Akhtar, M.; Li, W.; Zheng, X.; Shan, A.

10.1101/679977 — biochemistry — Posted on 2019-06-22

791 Discovery of small molecule antagonists of the USP5 zinc finger ubiquitin-binding domain

Mann, M. K.; Franzoni, I.; Ferreira de Freitas, R.; Tempel, W.; Houliston, S.; Arrowsmith, C. H.; Harding, R. J.; Schapira, M.

10.1101/676668 — pharmacology and toxicology — Posted on 2019-06-22

792 Recurrent networks can recycle neural resources to flexibly trade speed for accuracy in visual recognition

Spoerer, C. J.; Kietzmann, T. C.; Kriegeskorte, N.

10.1101/677237 — neuroscience — Posted on 2019-06-22

793 SCAP promotes CARTS biogenesis at endoplasmic reticulum-Golgi contact sites

Wakana, Y.; Hayashi, K.; Nemoto, T.; Watanabe, C.; Taoka, M.; Campelo, F.; Kumata, H.; Umemura, T.; Inoue, H.; Arasaki, K.; Tagaya, M.

10.1101/679936 — cell biology — Posted on 2019-06-22

794 Quantification of the effect of site-specific histone acetylation on chromatin remodeling rate

Wakamori, M.; Okabe, K.; Ura, K.; Funatsu, T.; Takinoue, M.; Umehara, T.

10.1101/679944 — biophysics — Posted on 2019-06-22

795 Maltotriose consumption by hybrid Saccharomyces pastorianus is heterotic and results from regulatory cross-talk between parental sub-genomes

Brouwers, N.; Brickwedde, A.; Gorter de Vries, A.; van den Broek, M.; Weening, S. M.; van den Eijnden, L. F.; Diderich, J. A.; Bai, F.-Y.; Pronk, J. T.; Daran, J.-M.

10.1101/679563 — microbiology — Posted on 2019-06-22

796 Mycobacterial OtsA structures reveal an allosteric site regulated by 2-oxoglutarate and 2-phosphoglycerate and the mechanism for substrate preference.

Mendes, V.; Acebron-Garcia-de-Eulate, M.; Verma, N.; Blaszczyk, M.; Dias, M. V. B.; Blundell, T. L.

10.1101/677302 — biochemistry — Posted on 2019-06-22

797 Hybrid histidine kinase activation by cyclic di-GMP- mediated domain liberation

Dubey, B. N.; Agustoni, E.; Boehm, R.; Kaczmarczyk, A.; Mangia, F.; von Arx, C.; Jenal, U.; Hiller, S.; Plaza-Menacho, I.; Schirmer, T.

10.1101/675454 — biochemistry — Posted on 2019-06-22

798 Vaccination strategies to control Ebola epidemics in the context of variable household inaccessibility levels

Chowell, G.; Tariq, A.; Kiskowski, M.

10.1101/665646 — epidemiology — Posted on 2019-06-22

799 Aging-Associated Decrease in the Histone Acetyltransferase KAT6B Causes Myeloid-Biased Hematopoietic Stem Cell Differentiation

Khokhar, E. S.; Borikar, S.; Eudy, E.; Stearns, T.; Young, K.; Trowbridge, J.

10.1101/679738 — cell biology — Posted on 2019-06-22

800 Actin chromobody imaging reveals sub-organellar actin dynamics

Schiavon, C. R.; Zhang, T.; Zhao, B.; Andrade, L. R.; Wu, M.; Sung, T.-C.; Dayn, Y.; Feng, J. W.; Quintero, O. A.; Grosse, R.; Manor, U.

10.1101/639278 — cell biology — Posted on 2019-06-22

801 Learning Drug Function from Chemical Structure with Convolutional Neural Networks and Random Forests

Meyer, J. G.; Liu, S.; Miller, I. J.; Coon, J.; Gitter, A. J.

10.1101/482877 — bioinformatics — Posted on 2019-06-22

802 Precise Coordination of 3-dimensional Rotational Kinematics by Ventral Tegmental Area GABAergic Neurons

Hughes, R.; Watson, G.; Petter, E.; Kim, N.; Bakhurin, K.; Yin, H.

10.1101/678391 — neuroscience — Posted on 2019-06-22

803 Reaction mechanisms of Pol IV, RDR2 and DCL3 drive RNA channeling in the siRNA-directed DNA methylation pathway

Singh, J.; Mishra, V.; Wang, F.; Huang, H.-Y.; Pikaard, C.

10.1101/679795 — biochemistry — Posted on 2019-06-22

804 Interactions with presynaptic photoreceptors mediated by the Dpr11 and DIP-γ cell surface proteins control selection and survival of Drosophila amacrine neurons

Menon, K.; Kulkarni, V.; Takemura, S.-y.; Anaya, M.; Zinn, K.

10.1101/679704 — neuroscience — Posted on 2019-06-22

805 Antagonistic coevolution between hosts and sexually transmitted infections

Ashby, B.

10.1101/590232 — evolutionary biology — Posted on 2019-06-22

806 Comparative analysis of EHR-based stroke phenotyping methods, their applications, and interpretation

Thangaraj, P. M.; Kummer, B.; Lorberbaum, T.; Elkind, M.; Tatonetti, N. P.

10.1101/565671 — bioinformatics — Posted on 2019-06-22

807 Show me your secret(ed) weapons: a multifaceted approach reveals novel type III-secreted effectors of a plant pathogenic bacterium

Jimenez guerrero, I.; Perez-Montano, F.; da Silva, G. M.; Wagner, N.; Shkedy, D.; Zhao, M.; Pizarro, L.; Bar, M.; Walcott, R.; Sessa, G.; Pupko, T.; Burdman, S.

10.1101/679126 — microbiology — Posted on 2019-06-22

808 FOXO mediates organismal hypoxia tolerance by regulating NF-κB in Drosophila

Barretto, E. C.; Polan, D. M.; Beevor-Potts, A. N.; Lee, B.; Grewal, S. S.

10.1101/679605 — cell biology — Posted on 2019-06-22

809 Manatee: detection and quantification of small non-coding RNAs from next-generation sequencing data

Handzlik, J. E.; Tastsoglou, S.; Vlachos, I. S.; Hatzigeorgiou, A. G.

10.1101/662007 — bioinformatics — Posted on 2019-06-22

810 Biomarkers for aging identified in cross-sectional studies tend to be non-causative

Nelson, P. G.; Promislow, D.; Masel, J.

10.1101/624270 — bioinformatics — Posted on 2019-06-22

811 Regulation of Ascorbic acid by gonadotropins in rat Ovary

Hussain, S. S.; Arora, T.; Chaturvedi, M. M.; Basu-Modak, S.; Chaudhary, R.; Muralidhar, K.

10.1101/665752 — zoology — Posted on 2019-06-22

812 Deep protein methylation profiling by combined chemical and immunoaffinity approaches reveals novel PRMT1 targets

Hartel, N. G.; Chew, B.; Qin, J.; Xu, J.; Graham, N.

10.1101/538686 — systems biology — Posted on 2019-06-22

813 A Kuramoto model of self-other integration across interpersonal synchronization strategies

Heggli, O. A.; Cabral, J.; Konvalinka, I.; Vuust, P.; Kringelbach, M. L.

10.1101/640383 — neuroscience — Posted on 2019-06-22

814 Amyloid pathology disrupts gliotransmitter release in astrocytes

Pillai, A. G.; Nadkarni, S.

10.1101/679860 — neuroscience — Posted on 2019-06-22

815 Daphnia stressor database: Taking advantage of a decade of Daphnia ‘-omics’ data for gene annotation

Ravindran, S. P.; Lueneburg, J.; Gottschlich, L.; Tams, V.; Cordellier, M.

10.1101/444190 — genomics — Posted on 2019-06-22

816 Sex-biased gene expression is repeatedly masculinized in asexual females

Parker, D. J.; Bast, J.; Jalvingh, K.; Dumas, Z.; Robinson-Rechavi, M.; Schwander, T.

10.1101/553172 — evolutionary biology — Posted on 2019-06-22

817 hunchback promoters can readout morphogenetic positional information in less than a minute

Desponds, J.; Vergassola, M.; Walczak, A. M.

10.1101/676684 — biophysics — Posted on 2019-06-22

818 Rapid antimicrobial sensitivity testing by single cell nanoscale optical interference

Bennett, I.; Pyne, A. L. B.; McKendry, R.

10.1101/679399 — biophysics — Posted on 2019-06-22

819 Behavioral and metabolic consequences after a single generation of angling selection in brown trout

Prokkola, J. M.; Alioravainen, N.; Mehtatalo, L.; Hyvarinen, P.; Lemopoulos, A.; Metso, S.; Vainikka, A.

10.1101/611293 — animal behavior and cognition — Posted on 2019-06-22

820 An alanine permease mutation or exposure to D-cycloserine increases the susceptibility of MRSA to beta-lactam antibiotics

Gallagher, L.; Shears, R. K.; Fingleton, C.; Alvarez, L.; Waters, E.; Clarke, J.; Bricio-Moreno, L.; Campbell, C.; Yadav, A.; Razvi, F.; O'Neill, E.; O'Neill, A.; Cava, F.; Fey, P.; Kadioglu, A.; O'Gara, J. P.

10.1101/616920 — microbiology — Posted on 2019-06-22

821 Quantitative proteomics indicate a strong correlation of mitotic phospho-/dephosphorylation with non-structured regions of substrates

Yamazaki, H.; Kosako, H.; Yoshimura, S. H.

10.1101/636407 — cell biology — Posted on 2019-06-22

822 Large scale automated phylogenomic analysis of bacterial whole-genome isolates and the Evergreen platform

Szarvas, J.; Ahrenfeldt, J.; Bellod Cisneros, J. L.; Thomsen, M. C. F.; Aarestrup, F. M.; Lund, O.

10.1101/540138 — bioinformatics — Posted on 2019-06-22

823 DNA Punch Cards: Encoding Data on Native DNA Sequences via Topological Modifications

Tabatabaei, S. K.; Wang, B.; Athreya, N. B. M.; Enghiad, B.; Hernandez, A. G.; Leburton, J.-P.; Soloveichik, D.; Zhao, H.; Milenkovic, O.

10.1101/672394 — synthetic biology — Posted on 2019-06-22

824 Highly structured, partner-sex- and subject-sex-dependent cortical responses during social facial touch

Ebbesen, C. L.; Bobrov, E.; Rao, R. P.; Brecht, M.

10.1101/545434 — neuroscience — Posted on 2019-06-22

825 Whisking asymmetry signals motor preparation and the behavioral state of mice

Dominiak, S. E.; Nashaat, M. A.; Sehara, K.; Oraby, H.; Larkum, M. E.; Sachdev, R. N.

10.1101/568030 — neuroscience — Posted on 2019-06-22

826 Intragenic repeat expansions control yeast chronological aging

Barre, B. P.; Hallin, J.; Yue, J.-X.; Persson, K.; Mikhalev, E.; Irizar, A.; Thompson, D.; Molin, M.; Warringer, J.; Liti, G.

10.1101/653006 — genomics — Posted on 2019-06-22

827 Strengths and potential pitfalls of hay-transfer for ecological restoration revealed by RAD-seq analysis in floodplain Arabis species

Dittberner, H.; Becker, C.; Jiao, W.-B.; Schneeberger, K.; Hoelzel, N.; Tellier, A.; de Meaux, J.

10.1101/474858 — ecology — Posted on 2019-06-22

828 Miltefosine increases macrophage cholesterol release and inhibits NLRP3-inflammasome assembly and IL-1β release.

Iacano, A. J.; Lewis, H.; Hazen, J. E.; Andro, H.; Smith, J. D.; Gulshan, K.

10.1101/430769 — cell biology — Posted on 2019-06-22

829 Determinants of Staphylococcus aureus PSMα3 Cross-α Amyloid Toxicity

Tayeb-Fligelman, E.; Salinas, N.; Tabachnikov, O.; Landau, M.

10.1101/452011 — biochemistry — Posted on 2019-06-22

830 Aquatic and terrestrial Cyanobacteria produce methane

Bizic, M.; Klintzch, T.; Ionescu, D.; Hindiyeh, M. Y.; Guenthel, M.; Muro Pastor, A. M.; Eckert, W.; Urich, T.; Keppler, F.; Grossart, H.-P.

10.1101/398958 — microbiology — Posted on 2019-06-21

831 Activity-dependent nucleation of dynamic microtubules at presynaptic boutons is required for neurotransmission

Qu, X.; Kumar, A.; Blockus, H.; Waites, C.; Bartolini, F.

10.1101/679464 — cell biology — Posted on 2019-06-21

832 TRESK K+ Channel Activity Regulates Trigeminal Nociception and Headache

Guo, Z.; Qiu, C.-S.; Jiang, X.; Zhang, J.; Li, F.; Liu, Q.; Dhaka, A.; Cao, Y.-Q.

10.1101/679530 — neuroscience — Posted on 2019-06-21

833 The temporal transcription factor E93 controls dynamic enhancer activity and chromatin accessibility during development

Nystrom, S. L.; Niederhuber, M. J.; McKay, D. J.

10.1101/679753 — developmental biology — Posted on 2019-06-21

834 The large GTPase, mGBP-2, inhibits Triple-Negative Breast Cancer cell migration, but not proliferation

Nyabuto, G. S.; Wilson, J. P.; Heilman, S. A.; Abnave, A. V.; Vestal, D. J.

10.1101/679514 — cancer biology — Posted on 2019-06-21

835 Arp2/3 and Unc45 maintain heterochromatin stability in Drosophila polytene chromosomes.

Dialynas, G.; Delabaere, L.; Chiolo, I.

10.1101/679548 — cell biology — Posted on 2019-06-21

836 Transposable elements strongly contribute to cell-specific and species-specific looping diversity in mammalian genomes.

Diehl, A. G.; Ouyang, N.; Boyle, A. P.

10.1101/679217 — genomics — Posted on 2019-06-21

837 Improving Sensitivity of the Digits-in-Noise Test using Antiphasic Stimuli

De Sousa, K. C.; Swanepoel, D. W.; Moore, D. R.; Myburgh, H.; Smits, C.

10.1101/677609 — pathology — Posted on 2019-06-21

838 The role of iron uptake systems in the pathogenesis of colistin-resistant hypervirulent K. pneumoniae infections

Dogan, O.; Vatansever, C.; Atac, N.; Albayrak, O.; Karahuseyinoglu, S.; Sahin, O. E.; Kilicoglu, B. K.; Demiray, A.; Ergonul, O.; Gönen, M.; Can, F.

10.1101/677492 — microbiology — Posted on 2019-06-21

839 Efficacy and safety of a novel vaginal medical device in Recurrent Bacterial Vaginosis: an international multicentre clinical trial

Murina, F.; Crisan, C.; Biris, M.; Sirbu, D.; Barattini, D. F.; Ardolino, L. I.; Casolati, E.

10.1101/674705 — clinical trials — Posted on 2019-06-21

840 The mitochondrial HSP90 paralog TRAP1 forms an OXPHOS-regulated tetramer and is involved in maintaining mitochondrial metabolic homeostasis

Joshi, A.; Dai, J.; Lee, J.; Mohammadi Ghahhari, N.; Segala, G.; Beebe, K.; Tsai, F. T. F.; Neckers, L.; Picard, D.

10.1101/679431 — cell biology — Posted on 2019-06-21

841 Targeting pathogenic Lafora bodies in Lafora disease using an antibody-enzyme fusion

Brewer, M. K.; Uittenbogaard, A.; Austin, G. L.; McCarthy, J. J.; Segvich, D. M.; DePaoli-Roach, A.; Roach, P. J.; Hodges, B. L.; Zeller, J.; Pauly, J. R.; McKnight, T.; Armstrong, D.; Gentry, M.

10.1101/679407 — biochemistry — Posted on 2019-06-21

842 Habitat specificity is not universal proxy for sensitivity to habitat conversion among rodents on the Canadian Prairies

Heisler, L. M.; Simpson, G. L.; Poulin, R. G.; Wellicome, T. I.; Hall, B. D.

10.1101/678268 — ecology — Posted on 2019-06-21

843 The WD40-repeat protein WDR-48 promotes the stability of the deubiquitinating enzyme USP-46 by inhibiting its ubiquitination and degradation

Hodul, M.; Ganji, R.; Dahlberg, C. L.; Raman, M.; Juo, P.

10.1101/679415 — biochemistry — Posted on 2019-06-21

844 Recombinant Expression of Aldehyde Dehydrogenase 2 (ALDH2) in Escherichia coli Nissle 1917 for Oral Delivery in ALDH2-Deficient Individuals

Ho, T.; Chang, C.; Wu, J.; Huang, I.; Tsai, L.; Lin, J.; Tai, E.; Chou, C.; Yang, J.; Wei, Y.; Yeh, C.; Chen, W.; Lu, D.; Chou, C.; Su, L.; Chang, N.; Huang, C.; Wang, C.; Abrena, P.; Cheung, C.; Yeh, C.; Whiteford, S.; Chen, P.; Huang, A.; Wu, A.; Wei, B.; Kao, E.; Lin, N.; Chang, A.; Yang, J.; Lin, Y.; Tsao, S.; Ward, N.; Chiang, T.; Clapper, J.

10.1101/674606 — synthetic biology — Posted on 2019-06-21

845 Intensity Warping for multisite MRI Harmonization

Wrobel, J.; Martin, M. L.; Shinohara, R. T.; Goldsmith, J.

10.1101/679357 — neuroscience — Posted on 2019-06-21

846 Temporal distribution of deleterious variations influences the estimation of FST

Subramanian, S.

10.1101/678011 — genetics — Posted on 2019-06-21

847 Interplay of ERα binding and DNA methylation in the intron-2 determines the expression and estrogen regulation of Cystatin A in breast cancer cells

John Mary, D. J. S.; Sikarwar, G.; Kumar, A.; Limaye, A. M.

10.1101/679043 — cancer biology — Posted on 2019-06-21

848 A DNA Methylation Fingerprint of Cellular Senescence

Levine, M. E.; Leung, D.; Minteer, C.; Gonzalez, J.

10.1101/674580 — systems biology — Posted on 2019-06-21

849 Precise Coordination of 3-dimensional Rotational Kinematics by Ventral Tegmental Area GABAergic Neurons

Hughes, R.; Watson, G.; Petter, E.; Kim, N.; Bakhurin, K.; Yin, H.

10.1101/678391 — neuroscience — Posted on 2019-06-21

850 Super-resolution Imaging Reveals 3D Structure and Organizing Mechanism of Accessible Chromatin

Xie, L.; Dong, P.; Qi, Y.; De Marzio, M.; Chen, X.; Banala, S.; Legant, W. R.; English, B. P.; Hansen, A.; Schulmann, A.; Lavis, L. D.; Betzig, E.; Casellas, R.; Chang, H. Y.; Zhang, B.; Tjian, R.; Liu, Z.

10.1101/678649 — molecular biology — Posted on 2019-06-21

851 Accurate, ultra-low coverage genome reconstruction and association studies in Hybrid Swarm mapping populations

Weller, C. A.; Bergland, A. O.

10.1101/671925 — genetics — Posted on 2019-06-21

852 Genome-wide sequence information reveals recurrent hybridization among diploid wheat wild relatives

Bernhardt, N.; Brassac, J.; Dong, X.; Willing, E.-M.; Poskar, C. H.; Kilian, B.; Blattner, F. R.

10.1101/678045 — evolutionary biology — Posted on 2019-06-21

853 Tracking the origin of island diversity: insights from divergence with the continental pool in monocots

Veron, S.; Mouchet, M.; Grandcolas, P.; Govaerts, R.; Haevermans, T.; Pellens, R.

10.1101/678300 — ecology — Posted on 2019-06-21

854 MicrographCleaner: a python package for cryo-EM micrograph segmentation using deep learning

Sanchez-Garcia, R.; Segura, J.; Maluenda, D.; Sorzano, C. O. S.; Carazo, J. M.

10.1101/677542 — bioinformatics — Posted on 2019-06-21

855 Epitope-based peptide vaccine against glycoprotein G of Nipah henipavirus using immunoinformatics approaches

Mohammed, A. A.; Shantier, S. W.; Mustafa, M. I.; Osman, H. K.; Elmansi, H. E.; Osman, I. A. A.; Mohammed, R. A.; Bashier, F. A.; Elnnewery, M. E.; Yousif, E. M.; Mustafa, M. M.; Elfadol, N. M.; Abdalla, A. I.; Mahmoud, E.; Eltay, A. A.; Ahmed, Y. A.; Hassan, M. A.

10.1101/678664 — bioinformatics — Posted on 2019-06-21

856 Cryo-EM structure of the complete and ligand-saturated insulin receptor ectodomain

Gutmann, T.; Schaefer, I.; Poojari, C.; Brankatschk, B.; Vattulainen, I.; Strauss, M.; Coskun, U.

10.1101/679233 — biochemistry — Posted on 2019-06-21

857 Predicting dysfunctional age-related task activations from resting-state network alterations

Mill, R. D.; Gordon, B. A.; Balota, D. A.; Zacks, J. M.; Cole, M. W.

10.1101/678086 — neuroscience — Posted on 2019-06-21

858 Genetic correlates of evolutionary adaptations in cognitive functional brain networks and their relationship to human cognitive functioning and disease

Wei, Y.; de Lange, S. C.; Scholtens, L. H.; Watanabe, K.; Ardesch, D. J.; Jansen, P. R.; Savage, J. E.; Li, L.; Preuss, T. M.; Rilling, J. K.; Posthuma, D.; van den Heuvel, M. P.

10.1101/671610 — neuroscience — Posted on 2019-06-21

859 Conjugative delivery of CRISPR-Cas9 for the selective depletion of antibiotic-resistant enterococci

Rodrigues, M.; McBride, S. W.; Hullahalli, K.; Palmer, K. L.; Duerkop, B. A.

10.1101/678573 — microbiology — Posted on 2019-06-21

860 Impact of white spotting alleles, including W20, on phenotype in the American Paint Horse

Brooks, S.; Palermo, K.; Kahn, A.; Hein, J.

10.1101/678052 — genetics — Posted on 2019-06-21

861 A likelihood approach for uncovering selective sweep signatures from haplotype data

Harris, A. M.; DeGiorgio, M.

10.1101/678722 — evolutionary biology — Posted on 2019-06-21

862 Mismatch of the morphology model is mostly unproblematic in total-evidence dating: insights from an extensive simulation study

Klopfstein, S.; Ryser, R.; Corio, M.; Spasejovic, T.

10.1101/679084 — evolutionary biology — Posted on 2019-06-21

863 Novel immune and stromal subtype classification system of lung adenocarcinoma based on tumor microenvironment

Zeng, Z.; Li, J.; Zhang, N.; Jiang, X.; Gao, Y.; Xu, L.; Liu, X.; Chen, J.; Gao, Y.; Han, L.; Ren, J.; Gong, Y.; Xie, C.

10.1101/677567 — bioinformatics — Posted on 2019-06-21

864 Using machine learning to predict organismal growth temperatures from protein primary sequences

Sauer, D.; Wang, D.-N.

10.1101/677328 — bioinformatics — Posted on 2019-06-21

865 Compositional heterogeneity of protocellular membranes: Implications for emergence of mixed vesicular systems

Sarkar, S.; Dagar, S.; Verma, A.; Rajamani, S.

10.1101/678847 — biochemistry — Posted on 2019-06-21

866 Reliable confidence intervals for RelTime estimates of evolutionary divergence times

Tao, Q.; Tamura, K.; Mello, B.; Kumar, S.

10.1101/677286 — evolutionary biology — Posted on 2019-06-21

867 Inferring quantity and qualities of superimposed reaction rates in single molecule survival time distributions

Reisser, M.; Hettich, J.; Kuhn, T.; Gebhardt, J. C. M.

10.1101/679258 — biophysics — Posted on 2019-06-21

868 Studies on Biochemical Changes and Prolactin Level Evaluation in Patients with Chronic Kidney Disease

Rahman, M. F.; Kabir, M. F.; Rezwan, M. S.

10.1101/677708 — biochemistry — Posted on 2019-06-21

869 An in silico analysis of robust but fragile gene regulation links enhancer length to robustness

Barr, K. A.; Reinitz, J.; Radulescu, O.

10.1101/677641 — systems biology — Posted on 2019-06-21

870 Generalizing movement patterns following shoulder fixation

Maeda, R. S.; Zdybal, J. M.; Gribble, P. L.; Pruszynski, J. A.

10.1101/678623 — neuroscience — Posted on 2019-06-21

871 Reproducible microbial community dynamics of two drinking water systems treating similar source waters.

Potgieter, S. C.; Pinto, A. J.; Havenga, M.; Sigudu, M.; Venter, S. N.

10.1101/678920 — microbiology — Posted on 2019-06-21

872 High genetic diversity can contribute to extinction in small populations

Kyriazis, C. C.; Wayne, R. K.; Lohmueller, K. E.

10.1101/678524 — evolutionary biology — Posted on 2019-06-21

873 Transcriptional Activation of Arabidopsis Zygotes Is Required for Their Initial Division

Kao, P.; Nodine, M. D.

10.1101/679035 — developmental biology — Posted on 2019-06-21

874 Analyzing and comparing the radius of gyration and hydrodynamic radius in conformational ensembles of intrinsically disordered proteins

Ahmed, M. C.; Crehuet, R.; Lindorff-Larsen, K.

10.1101/679373 — biophysics — Posted on 2019-06-21

875 Structure-based drug repositioning reveals ibrutinib as VEGFR2 inhibitor

Adasme, M. F.; Parisi, D.; Van Belle, K.; Salentin, S.; Haupt, V. J.; Jennings, G. S.; Heinrich, J.-C.; Herman, J.; Sprangers, B.; Louat, T.; Moreau, Y.; Schroeder, M.

10.1101/678896 — bioinformatics — Posted on 2019-06-21

876 MMCA: a Web-based Server for the Microbiome and Metabolome Correlation Analysis

Ni, Y.; Yu, G.; Deng, Y.; Zheng, X.; Chen, T.; Fu, J.; Jia, W.

10.1101/678813 — bioinformatics — Posted on 2019-06-21

877 Stochastic transcription in the p53-mediated response to DNA damage is modulated by burst frequency

Friedrich, D.; Friedel, L.; Herrmann, A.; Preibisch, S.; Loewer, A.

10.1101/679449 — systems biology — Posted on 2019-06-21

878 Accelerated Biochemical Kinetic Model Fitting via the Asynchronous, Generalized Island Method

Medley, J. K.; Asifullah, S.; Hellerstein, J.; Sauro, H. M.

10.1101/660522 — systems biology — Posted on 2019-06-21

879 In-situ Real-time Field Imaging and Monitoring of Leaf Stomata by High-resolution Portable Microscope

Purwar, P.; Lee, J.

10.1101/677450 — plant biology — Posted on 2019-06-21

880 Inference based decisions in a hidden state foraging task: differential contributions of prefrontal cortical areas

Vertechi, P.; Lottem, E.; Sarra, D.; Godinho, B.; Treves, I.; Quendera, T.; Oude Lohuis, M. N.; Mainen, Z. F.

10.1101/679142 — neuroscience — Posted on 2019-06-21

881 Enhancer-dependence of gene expression increases with developmental age

Cai, W.; Huang, J.; Zhu, Q.; Li, B. E.; Seruggia, D.; Zhou, P.; Nguyen, M.; Fujiwara, Y.; Xie, H.; Yang, Z.; Hong, D.; Ren, P.; Xu, J.; Pu, W. T.; Yuan, G.; Orkin, S. H.

10.1101/678334 — molecular biology — Posted on 2019-06-21

882 Type I-F CRISPR-Cas resistance against virulent phage infection triggers abortive infection and provides population-level immunity

Watson, B. N.; Vercoe, R. B.; Salmond, G. P.; Westra, E. R.; Staals, R. H.; Fineran, P. C.

10.1101/679308 — microbiology — Posted on 2019-06-21

883 The C-terminal non-catalytic domain of Mkp-1 phosphatase harbors a complex signal for rapid proteasome degradation in enterocytes

Wang, J.; Grishin, A. V.; Delaplain, P.; Gayer, C. P.; Ford, H. R.

10.1101/677369 — immunology — Posted on 2019-06-21

884 SPsimSeq: semi-parametric simulation of bulk and single cell RNA sequencing data

Assefa, A. T.; Vandesompele, J.; Thas, O.

10.1101/677740 — genomics — Posted on 2019-06-21

885 Simple and complex interactions between sleep-wake driven and circadian processes shape daily genome regulatory dynamics in the mouse

Hor, C. N.; Yeung, J.; Jan, M.; Emmenegger, Y.; Hubbard, J.; Xenarios, I.; Naef, F.; Franken, P.

10.1101/677807 — genomics — Posted on 2019-06-21

886 The Goldilocks effect of lake size on within-population diversity in stickleback

Bolnick, D.; Ballare, K.

10.1101/678276 — ecology — Posted on 2019-06-21

887 RIPK3 upregulation confers robust proliferation and collateral cystine-dependence on breast cancer recurrence

Lin, C.-C.; Mabe, N.; Lin, Y.-T.; Yang, W.-H.; Tang, X.; Hong, L.; Sun, T.; Yao, T.-P.; Alvarez, J.; Chi, J.-T.

10.1101/679332 — cancer biology — Posted on 2019-06-21

888 Improved Sensitivity in Low-Input Proteomics using Micro-Pillar Array-based Chromatography

Stadlmann, J.; Hudecz, O.; Krssakova, G.; Van Raemdonck, G.; Op De Beeck, J.; Desmet, G.; Penninger, J. M.; Jacobs, P.; Mechtler, K.

10.1101/678995 — biochemistry — Posted on 2019-06-21

889 Reconstructing neural representations of tactile space

Tame, L.; Tucciarelli, R.; Sadibolova, R.; Sereno, M. I.; Longo, M.

10.1101/679241 — neuroscience — Posted on 2019-06-21

890 Neuroanatomical Changes in White and Grey Matter after Sleeve Gastrectomy

Michaud, A.; Dadar, M.; Pelletier, M.; Zeighami, Y.; Garcia-Garcia, I.; Yau, Y.; Nadeau, M.; Marceau, S.; Biertho, L.; Tchernof, A.; Collins, L. D.; Richard, D.; Dagher, A.

10.1101/678284 — neuroscience — Posted on 2019-06-21

891 Functional connectome linking child-parent relationships with psychological problems in adolescence

Itahashi, T.; Okada, N.; Ando, S.; Yamasaki, S.; Koshiyama, D.; Morita, K.; Yahata, N.; Koike, S.; Nishiyama, A.; Kasai, K.; Hashimoto, R.-i.

10.1101/678714 — neuroscience — Posted on 2019-06-21

892 Cortical temporal hierarchy is immature in middle childhood

Moraczewski, D.; Nketia, J.; Redcay, E.

10.1101/678326 — neuroscience — Posted on 2019-06-21

893 HTT is a repressor of ABL activity required for APP induced axonal growth

Marquilly, C.; Busto, G.; Leger, B. S.; Giniger, E.; Walker, J. A.; Fradkin, L. G.; Dura, J.-M.

10.1101/679381 — neuroscience — Posted on 2019-06-21

894 Guillain-Barre syndrome outbreak in Peru: Association with polymorphisms in IL-17, ICAM-1 and CD1

Jaramillo-Valverde, L.; Levano, K. S.; Villanueva, I.; Hidalgo, M.; Cornejo, M.; Mazzetti, P.; Cornejo-Olivas, M.; Sanchez, C.; Poterico, J. A.; Valdivia-Silva, J.; Guio, H.

10.1101/667154 — molecular biology — Posted on 2019-06-21

895 Architecture and modular assembly of the Sulfolobus S-layers revealed by electron cryo-tomography

Gambelli, L.; Meyer, B.; McLaren, M.; Sanders, K.; Quax, T. E. F.; Gold, V.; Albers, S. V.; Daum, B.

10.1101/677591 — microbiology — Posted on 2019-06-21

896 Mapping gene regulatory networks of primary CD4+ T cells using single-cell genomics and genome engineering

Gate, R. E.; Kim, M. C.; Lu, A.; Lee, D.; Shifrut, E.; Subramaniam, M.; Marson, A.; Ye, C. J.

10.1101/678060 — genomics — Posted on 2019-06-21

897 Natural selection towards wild-type in composite cross populations of winter wheat

Knapp, S.; Doering, T.; Jones, H.; Wingen, L.; Snape, J.; Wolfe, M.; Leverington-Waite, M.; Griffiths, S.

10.1101/678938 — genetics — Posted on 2019-06-21

898 A subset of SMN complex members have a specific role in tissue regeneration via ERBB pathway-mediated proliferation

Pei, W.; Xu, L.; Chen, Z.; Slevin, C. C.; Pettie, K. P.; Wincovitch, S.; NISC Comparative Sequencing Program, ; Burgess, S. M.

10.1101/678417 — genetics — Posted on 2019-06-21

899 Evidence supporting a viral origin of the eukaryotic nucleus

Bell, P. J.

10.1101/679175 — evolutionary biology — Posted on 2019-06-21

900 Quantifying eco-evolutionary contributions to trait divergence in spatially structured systems

Govaert, L.; Pantel, J.; De Meester, L.

10.1101/677526 — ecology — Posted on 2019-06-21

901 Emergence of alternative stable states in microbial communities in a fluctuating environment

Andersen Woltz, V. L.; Abreu, C. I.; Friedman, J.; Gore, J.

10.1101/678367 — ecology — Posted on 2019-06-21

902 Disrupting the Transmembrane Domain Oligomerization of Protein Tyrosine Phosphatase Receptor J Promotes its Activity in Cancer Cells

Bloch, E.; Sikorski, E.; Pontoriero, D.; Berger, B. W.; Lazzara, M. J.; Thevenin, D.

10.1101/672147 — biochemistry — Posted on 2019-06-21

903 The common message of constraint-based optimization approaches: overflow metabolism is caused by two growth-limiting constraints

de Groot, D. H.; Lischke, J.; Muolo, R.; Planque, R.; Bruggeman, F. J.; Teusink, B.

10.1101/679019 — systems biology — Posted on 2019-06-21

904 Norvaline reduces blood pressure and induces diuresis in rats with inherited stress-induced arterial hypertension.

Gilinsky, M. A.; Polityko, Y. K.; Markel, A. L.; Latysheva, T. V.; Samson, A. O.; Polis, B.; Naumenko, S. E.

10.1101/678839 — physiology — Posted on 2019-06-21

905 GDF15 and the beneficial actions of metformin in pre-diabetes

Coll, A. P.; Chen, M.; Taskar, P.; Rimmington, D.; Patel, S.; Tadross, J.; Cimino, I.; Yang, M.; Welsh, P.; Virtue, S.; Goldspink, D. A.; Miedzybrodzka, E.; Tung, Y. C. L.; Rodriguez-Cuenca, S.; Tomaz, R. A.; Harding, H. P.; Melvin, A.; Yeo, G. S. H.; Preiss, D.; Vidal-Puig, A.; Vallier, L.; Ron, D.; Gribble, F. M.; Reimann, F.; Sattar, N.; Savage, D. B.; Allan, B. B.; O'Rahilly, S.

10.1101/677831 — physiology — Posted on 2019-06-21

906 Rho-kinase mediates the anorexigenic action of melanocortin by suppressing AMPK

Kim, S. S.; Hwang, W. M.; Yang, W. M.; Lee, H.; Park, K. S.; Dagon, Y.; Kim, Y.-B.

10.1101/677880 — neuroscience — Posted on 2019-06-21

907 Individualized Dynamic Brain Models: Estimation and Validation with Resting-State fMRI

Singh, M.; Braver, T.; Cole, M.; Ching, S.

10.1101/678243 — neuroscience — Posted on 2019-06-21

908 The \"creatures\" of the human cortical somatosensory system

Saadon-Grosman, N.; Arzy, S.; Loewenstein, Y.

10.1101/675611 — neuroscience — Posted on 2019-06-21

909 Integrative and conjugative elements, the neglected drivers of carbapenemase-encoding genes

Botelho, J.; Mourao, J.; Roberts, A. P.; Peixe, L. V.

10.1101/678748 — microbiology — Posted on 2019-06-21

910 Inorganic salts and compatible solutes help mesophilic bacteria inhabit the high temperature waters of a Trans-Himalayan sulfur-borax spring

Mondal, N.; Roy, C.; Peketi, A.; Alam, M.; Mapder, T.; Mandal, S.; Fernandes, S.; Bhattacharya, S.; Rameez, M. J.; Haldar, P. K.; Volvoikar, S. P.; Nandi, N.; Bhattacharya, T.; Mazumdar, A.; Chakraborty, R.; Ghosh, W.

10.1101/678680 — microbiology — Posted on 2019-06-21

911 Dolosigranulum pigrum cooperation and competition in human nasal microbiota

Brugger, S. D.; Eslami, S. M.; Pettigrew, M. M.; Fernandez Escapa, I.; Henke, M. M.; Kong, Y.; Lemon, K. P.

10.1101/678698 — microbiology — Posted on 2019-06-21

912 Towards the minimal proteome of life: Proteome profiles of Bacillus subtilis vegetative cells and spores

Swarge, B.; Roseboom, W.; de Koster, C.; Brul, S.; de Koning, L.

10.1101/678979 — microbiology — Posted on 2019-06-21

913 Structural analysis of pathogenic missense mutations in GABRA2 and identification of a novel de novo variant in the desensitization gate

Sanchis-Juan, A.; Hasenahuer, M. A.; Baker, J. A.; McTague, A.; Barwick, K.; Kurian, M. A.; Duarte, S. T.; NIHR BioResource, ; Thornton, J.; Raymond, F. L.

10.1101/678219 — genetics — Posted on 2019-06-21

914 The probability distribution of the reconstructed phylogenetic tree with occurrence data

Gupta, A.; Manceau, M.; Vaughan, T.; Khammash, M.; Stadler, T.

10.1101/679365 — evolutionary biology — Posted on 2019-06-21

915 On the expression of co-operative feeding behaviour in 3rd instar Drosophila melanogaster larvae

Khodaei, L.; Newman, T.; Lum, S.; Ngo, H.; Maoloni, M.; Long, T. A. F.

10.1101/678631 — evolutionary biology — Posted on 2019-06-21

916 Empirical characterization factors assessing the effects of hydroelectricity on fish richness across three large biomes

Turgeon, K.; Trottier, G.; Turpin, C.; Bulle, C.; Margni, M.

10.1101/678383 — ecology — Posted on 2019-06-21

917 Regulation of community functional composition across taxonomic variation by resource-consumer dynamics

Worden, L.

10.1101/677682 — ecology — Posted on 2019-06-21

918 Unexpectedly High Subclonal Mutational Diversity in Human Colorectal Cancer and Its Significance

Loeb, L. A.; Kohrn, B.; Loubet-Senear, K. J.; Dunn, Y. J.; Ahn, E. H.; O'Sullivan, J. N.; Salk, J. J.; Bronner, M. P.; Beckman, R. A.

10.1101/672493 — cancer biology — Posted on 2019-06-21

919 XenoCell: classification of cellular barcodes in single cell experiments from xenograft samples

Cheloni, S.; Hillje, R.; Luzi, L.; Pelicci, P. G.; Gatti, E.

10.1101/679183 — bioinformatics — Posted on 2019-06-21

920 Decomposing Retrosynthesis into Reactive Center Prediction and Molecule Generation

Liu, X.; Li, P.; Song, S.

10.1101/677849 — bioengineering — Posted on 2019-06-21

921 Variation in protein coding genes identifies information flow as a contributor to animal complexity

Dean, J.; Lopes Cardoso, D.; Sharpe, C. R.

10.1101/679456 — systems biology — Posted on 2019-06-21

922 Salivary sex hormone levels following oxytocin administration in autistic and typical women

Procyshyn, T. L.; Lombardo, M. V.; Lai, M.-C.; Auyeung, B.; Crockford, S. K.; Deakin, J.; Soubramanian, S.; Sule, A.; Baron-Cohen, S.; Bethlehem, R. A.

10.1101/679282 — neuroscience — Posted on 2019-06-21

923 High precision coding in mouse visual cortex

Stringer, C.; Michaelos, M.; Pachitariu, M.

10.1101/679324 — neuroscience — Posted on 2019-06-21

924 Accurate inference of the full base-pairing structure of RNA by deep mutational scanning and covariation-induced deviation of activity

Zhang, Z.; Xiong, P.; Zhang, T.; Wang, J.; Zhan, J.; Zhou, Y.

10.1101/677310 — molecular biology — Posted on 2019-06-21

925 Integrated Approach On Degaradtion Of Azo Dyes Using Laccase Enzyme And Nanoparticle With Its Interaction By In Silco Analysis

Sridharan, R.; Krishnaswamy, V.; Murali, A.; Rajagopal, R.; Kumar D, T.; Doss C, G. P.

10.1101/677690 — microbiology — Posted on 2019-06-21

926 The evolution of biotic and abiotic realized niches within freshwater Synechococcus

Tromas, N.; Castelli, M.; Taranu, Z. E.; Pimentel, J. S. M.; Pereira, D. A.; Marcoz, R.; Giani, A.; Shapiro, B. J.

10.1101/678375 — ecology — Posted on 2019-06-21

927 One step towards bioremediating a heavily polluted river: Metagenomic insights on the function of microbial community

Breton-Deval, L. d. M.; Sanchez-Reyes, A.; Sanchez-Flores, A.; Juarez, K.; Mussali-Galante, P.

10.1101/675876 — ecology — Posted on 2019-06-21

928 Mixture Network Regularized Generalized Linear Model with Feature Selection

Li, K.; Wang, X.; Kuan, P. F.

10.1101/678029 — bioinformatics — Posted on 2019-06-21

929 Multiple Drug Resistance in the canine hookworm Ancylostoma caninum: an Emerging Threat

Jimenez-Castro, P. D.; Howell, S.; Schaefer, J. J.; Avramenko, R. W.; Gilleard, J.; Kaplan, R.

10.1101/676007 — zoology — Posted on 2019-06-21

930 Significance of trends in gait dynamics

Kozlowska, K.; Latka, M.; West, B. J.

10.1101/677948 — physiology — Posted on 2019-06-21

931 CD49f is a novel marker to purify functional human iPSC-derived astrocytes

Barbar, L.; Jain, T.; Zimmer, M.; Kruglikov, I.; Burstein, S.; Rusielewicz, T.; Nijsure, M.; Croft, G.; Wang, M.; Zhang, B.; Liddelow, S.; Fossati, V.

10.1101/678359 — neuroscience — Posted on 2019-06-21

932 Nucleocytoplasmic Proteomic Analysis Uncovers ETF1 and Nonsense Mediated Decay as Modifiers of ALS C9orf72 Toxicity

Ortega, J. A.; Daley, E. L.; Kour, S.; Samani, M.; Tellez, L.; Hall, E. A.; Esengul, T. Y.; Tsai, Y.-H.; Gendron, T. F.; Donnelly, C. J.; Siddique, T.; Savas, J. N.; Pandey, U. B.; Kiskinis, E.

10.1101/677419 — neuroscience — Posted on 2019-06-21

933 Wider pulses and higher intensities increase efficiency of high frequency rTMS

Halawa, I.; Reichert, K.; Sommer, M.; Paulus, W.

10.1101/652578 — neuroscience — Posted on 2019-06-21

934 Persister Cells Resuscitate via Ribosome Modification by 23S rRNA Pseudouridine Synthase RluD

Song, S.; Wood, T. K.

10.1101/678425 — molecular biology — Posted on 2019-06-21

935 Highly Multiplexed Spatial Mapping of Microbial Communities

Shi, H.; Zipfel, W.; Brito, I.; De Vlaminck, I.

10.1101/678672 — microbiology — Posted on 2019-06-21

936 Characterization of consensus operator site for Streptococcus pneumoniae copper repressor, CopY

O'Brien, H. Y.; Alvin, J. W.; Menghani, S. V.; Van Doorslaer, K.; Johnson, M. D. L.

10.1101/676700 — microbiology — Posted on 2019-06-21

937 An Atlas of Immune Cell Exhaustion in HIV-Infected Individuals Revealed by Single-Cell Transcriptomics

Wang, S.; Zhang, Q.; Hui, H.; Agrawal, K.; Karris, M. A. Y.; Rana, T.

10.1101/678763 — genomics — Posted on 2019-06-21

938 A temporal map of gene expression pattern during zebrafish liver regeneration

Jagtap, U.; Sivadas, A.; Basu, S.; Verma, A.; Sivasubbu, S.; Scaria, V.; Sachidanandan, C.

10.1101/677781 — genomics — Posted on 2019-06-21

939 An atlas on causal role of circulating vitamin D concentrations in human complex traits and diseases

Jiang, X.; Ge, T.; Chen, C.-Y.

10.1101/677922 — genetics — Posted on 2019-06-21

940 De novo DNA methyltransferase activity in colorectal cancer is directed towards H3K36me3 marked CpG islands

Masalmeh, R. H. A.; Rubio-Ramon, C.; Taglini, F.; Higham, J.; Davidson-Smith, H.; Clark, R.; Wills, J.; Finch, A. J.; Murphy, L.; Sproul, D.

10.1101/676346 — genetics — Posted on 2019-06-21

941 Microenvironmental adaptations drive obesity-associated pancreatic cancer

Chung, K. M.; Singh, J.; Lawres, L.; Dorans, K. J.; Robbins, R.; Bhutkar, A.; Babic, A.; Vayrynen, S. A.; Dias Costa, A.; Nowak, J. A.; Chang, D. T.; Dunne, R. F.; Hezel, A. F.; Koong, A. C.; Wilhelm, J. J.; Bellin, M. D.; Nylander, V.; Gloyn, A. L.; McCarthy, M. I.; Wolpin, B. M.; Jacks, T.; Fuchs, C. S.; Muzumdar, M. D.

10.1101/663583 — cancer biology — Posted on 2019-06-21

942 Intramolecular Communication and Allosteric Sites in Enzymes Unraveled by Time-Dependent Linear Response Theory

Huang, B.-C.; Chang-Chein, C.-H.; Yang, L.-W.

10.1101/677617 — biophysics — Posted on 2019-06-21

943 Single-cell entropy to quantify the cellular transcriptome from single-cell RNA-seq data

Liu, J.; Song, Y.; Lei, J.

10.1101/678557 — bioinformatics — Posted on 2019-06-21

944 Biomechanical Analysis of Angular Motion in Association with Bilateral Semicircular Canal Function

Shen, S.; Zhao, F.; Chen, Z.; Zheng, Q.; Yu, S.; Cao, T.; Ma, P.

10.1101/677872 — bioengineering — Posted on 2019-06-21

945 Engineering an Enzyme for Direct Electrical Monitoring of Activity

Zhang, B.; Deng, H.; Mukherjee, S.; Song, W.; Wang, X.; Lindsay, S.

10.1101/678656 — bioengineering — Posted on 2019-06-21

946 Systematic perturbation of yeast essential genes using base editing

Despres, P. C.; Dube, A. K.; Seki, M.; Yachie, N.; Landry, C. R.

10.1101/677203 — synthetic biology — Posted on 2019-06-21

947 Assessing Root System Architecture of Wheat Seedlings Using A High-Throughput Root Phenotyping System

Adeleke, E.; Millas, R.; McNeal, W.; Faris, J.; Taheri, A.

10.1101/677955 — plant biology — Posted on 2019-06-21

948 Endothelial-derived exosomes demonstrate a link between endothelial innate inflammation and brain dysfunction and injury in aging

Elahi, F. M.; Harvey, D. J.; Altendahl, M.; Casaletto, K. B.; Fernandes, N.; Staffaroni, A. M.; Maillard, P.; Hinman, J. D.; Miller, B. L.; DeCarli, C.; Kramer, J. H.; Goetzl, E. J.

10.1101/670083 — neuroscience — Posted on 2019-06-21

949 Inter-animal variability, experience-dependence and continuous dorsoventral tuning of integrative properties of stellate cells in the medial entorhinal cortex

Pastoll, H.; Garden, D.; Papastathopoulos, I.; Surmeli, G.; Nolan, M.

10.1101/678565 — neuroscience — Posted on 2019-06-21

950 A major Role for Nrf2 transcription factors in cell transformation by KSHV encoded oncogenes.

Sapochnik, D.; Raimondi, A.; Medina, V.; Naipauer, J.; Mesri, E.; Coso, O.

10.1101/678342 — cancer biology — Posted on 2019-06-21

951 Fractal dimension, occupancy and hotspot analyses of B cell spatial distribution predict clinical outcome in breast cancer

Wortman, J. C.; He, T.-F.; Solomon, S.; Zhang, R. Z.; Rosario, A.; Wang, R.; Tu, T. Y.; Schmolze, D.; Yuan, Y.; Yost, S. E.; Li, X.; Levine, H.; Atwal, G.; Lee, P. P.; Yu, C. C.

10.1101/678607 — cancer biology — Posted on 2019-06-21

952 Mycobacterial OtsA structures reveal an allosteric site regulated by 2-oxoglutarate and 2-phosphoglycerate and the mechanism for substrate preference.

Mendes, V.; Acebron-Garcia-de-Eulate, M.; Verma, N.; Blaszczyk, M.; Dias, M. V. B.; Blundell, T. L.

10.1101/677302 — biochemistry — Posted on 2019-06-21

953 Functional Analysis of FRIGIDA Using Naturally Occurring Variation in Arabidopsis thaliana

Zhang, L.; Jimenez-Gomez, J. M.

10.1101/677468 — plant biology — Posted on 2019-06-21

954 Appraising causal relationships of dietary, nutritional and physical-activity exposures with overall and aggressive prostate cancer: two-sample Mendelian randomization study based on 79,148 prostate cancer cases and 61,106 controls

Kazmi, N.; Haycock, P.; Tsilidis, K.; Lynch, B. M.; Truong, T.; Martin, R. M.; Lewis, S.

10.1101/674820 — epidemiology — Posted on 2019-06-21

955 Serum level of High-density lipoprotein particles are independently associated with long-term prognosis in patients with coronary artery disease: The GENES study

Duparc, T.; Ruidavets, J.-B.; Genoux, A.; Najib, S.; Ferrieres, J.; Perret, B.; Martinez, L. O.

10.1101/676122 — epidemiology — Posted on 2019-06-21

956 Class of antiretroviral drugs and anemia risk in the current treatment era

Harding, B. N.; Whitney, B. M.; Nance, R. M.; Crane, H. M.; Burkholder, G.; Moore, R. D.; Mathews, W. C.; Eron, J. J.; Hunt, P. W.; Volberding, P.; Rodriguez, B.; Mayer, K. H.; Saag, M. S.; Kitahata, M. M.; Heckbert, S. R.; Delaney, J. A. C.

10.1101/674549 — epidemiology — Posted on 2019-06-21

957 High-density lipoprotein characteristics and coronary heart disease: a Mendelian randomization study

Prats-Uribe, A.; Sayols-Baixeras, S.; Fernandez-Sanles, A.; Subirana, I.; Carreras-Torres, R.; Vilahur, G.; Civeira, F.; Marrugat, J.; Fito, M.; Hernaez, A.; Elosua, R.

10.1101/673939 — epidemiology — Posted on 2019-06-21

958 Disease driven extinction in the wild of the Kihansi spray toad (Nectophrynoides asperginis)

Weldon, C.; Channing, A.; Misinzo, G.; Cunningham, A. A.

10.1101/677971 — epidemiology — Posted on 2019-06-21

959 Stanford Accelerated Intelligent Neuromodulation Therapy (SAINT) Induces Functional Connectivity Changes in Emotion Regulation Brain Areas for MDD Patients

Xiao, X.; Bentzley, B.; Cole, E. J.; Tischler, C.; Stimpson, K. H.; Duvio, D.; Bishop, J. H.; Schatzberg, A.; Keller, C.; Sudheimer, K.; Williams, N. R.

10.1101/672154 — clinical trials — Posted on 2019-06-21

960 Risk factors for asthma among schoolchildren who participated in a case-control study in urban Uganda

Mpairwe, H.; Namutebi, M.; Nkurunungi, G.; Tumwesige, P.; Nambuya, I.; Mukasa, M.; Onen, C.; Nnaluwooza, M.; Apule, B.; Katongole, T.; Oduru, G.; Kahwa, J.; Webb, E. L.; Lubyayi, L.; Pearce, N.; Elliott, A. M.

10.1101/677799 — epidemiology — Posted on 2019-06-21

961 Does Sex Modify an Association of Electrophysiological Substrate with Sudden Cardiac Death? The Atherosclerosis Risk in Communities (ARIC) Study

Howell, S.; German, D.; Bender, A.; Phan, F.; Mukundan, S.; Perez-Alday, E.; Rogovoy, N.; Haq, K.; Yang, K.; Wirth, A.; Jensen, K.; Tereshchenko, L. G.

10.1101/674689 — epidemiology — Posted on 2019-06-21

962 Climate drivers of malaria at its southern fringe in the Americas

Laneri, K.; Cabella, B.; Prado, P. I.; Coutinho, R. M.; Kraenkel, R. A.

10.1101/674572 — epidemiology — Posted on 2019-06-21

963 A Multidimensional Array Representation of State-Transition Model Dynamics

Krijkamp, E.; Alarid-Escudero, F.; Enns, E.; Pechlivanoglou, P.; Hunink, M.; Jalal, H.

10.1101/670612 — epidemiology — Posted on 2019-06-21

964 Multi-lineage evolution in viral populations driven by host immune systems

Marchi, J.; Lassig, M.; Mora, T.; Walczak, A. M.

10.1101/674887 — epidemiology — Posted on 2019-06-21

965 Regression Analysis of Dependent Binary Data for Estimating Disease Etiology from Case-Control Studies

Wu, Z.; Chen, I.

10.1101/672808 — epidemiology — Posted on 2019-06-21

966 Identifying Potential Causal Risk Factors for Self-Harm: A Polygenic Risk Scoring and Mendelian Randomisation Approach

Lim, K. X.; Rijsdijk, F.; Hagenaars, S. P.; Socrates, A.; Choi, S. W.; Coleman, J. R.; Glanville, K. P.; Lewis, C. M.; Pingault, J.-B.

10.1101/673053 — epidemiology — Posted on 2019-06-21

967 A chromosome folding intermediate at the condensin-to-cohesin transition during telophase

Abramo, K.; Valton, A.-L.; Venev, S. V.; Ozadam, H.; Fox, A. N.; Dekker, J.

10.1101/678474 — genomics — Posted on 2019-06-21

968 Estimation of the force of infection and infectious period of skin sores in remote Australian communities using interval-censored data

Lydeamore, M.; Campbell, P. T.; Price, D. J.; Wu, Y.; Marcato, A. J.; Cuningham, W.; Carapetis, J. R.; Andrews, R. M.; McDonald, M. I.; McVernon, J.; Tong, S. Y. C.; McCaw, J. M.

10.1101/674663 — epidemiology — Posted on 2019-06-21

969 Tankyrase inhibition sensitizes cells to CDK4 blockade

Foronda, M.; Tarumoto, Y.; Schatoff, E. M.; Leach, B. I.; Diaz, B. J.; Goswami, S.; Shusterman, M.; Vakoc, C. R.; Dow, L.

10.1101/677823 — cancer biology — Posted on 2019-06-21

970 Recycling RNA-Seq Data to Identify Candidate Orphan Genes for experimental analysis

Li, J.; Arendsee, Z.; Singh, U.; Wurtele, E. S.

10.1101/671263 — bioinformatics — Posted on 2019-06-21

971 EpiSort: Enumeration of cell types using targeted bisulfite sequencing

Aran, D.; Dover, R. S.; Lundy, K. E.; Leipold, M. D.; Xuhuai, J.; McDevitt, S. L.; Davis, M. M.; Butte, A. J.

10.1101/677211 — immunology — Posted on 2019-06-21

972 On the development of sleep states in the first weeks of life

Wielek, T.; Del Giudice, R.; Lang, A.; Wislowska, M.; Ott, P.; Schabus, M.

10.1101/678144 — neuroscience — Posted on 2019-06-21

973 Novel Bayesian Networks for Genomic Prediction of Developmental Traits in Biomass Sorghum

Gore, M. A.; dos Santos, J. P. R.; Fernandes, S. B.; Lozano, R.; Brown, P. J.; Buckler, E. S.; Garcia, A. A. F.

10.1101/677179 — genetics — Posted on 2019-06-21

974 Themetagenomics: Exploring Thematic Structure and Predicted Functionality of 16s rRNA Amplicon Data

Woloszynek, S.; Mell, J. C.; Zhao, Z.; Simpson, G.; O'Connor, M. P.; Rosen, G. L.

10.1101/678110 — bioinformatics — Posted on 2019-06-21

975 Genetic diversity of Collaborative Cross mice controls viral replication, clinical severity and brain pathology induced by Zika virus infection, independently of Oas1b

Manet, C.; Simon-Loriere, E.; Jouvion, G.; Hardy, D.; Prot, M.; Flamand, M.; Panthier, J.-J.; Sakuntabhai, A.; Montagutelli, X.

10.1101/677484 — genetics — Posted on 2019-06-21

976 Down-regulated GDF9 and BMP15 mRNAs are the important determining factors for the unexplained female infertility cases advised for assisted reproductive technology

Dutta Gupta, S.; Kundu, S.; Dhar, B.; Das, N.; Paul Choudhury, A.; Deb, M.; Das, A.; Das, A.; Das, N.; Choudhury, B.; Varghese, A. C.; Kar, K. K.; Choudhury, Y.; Ghosh, S. K.

10.1101/676882 — epidemiology — Posted on 2019-06-21

977 Full Emergence timing and voltinism of phantom midges, Chaoborus spp., in the UK

Brown, K. C.; Cockroft, R.; Jenkins, R.; Irwin, A.; Norman, S.

10.1101/676874 — ecology — Posted on 2019-06-21

978 Genome-wide and enzymatic analysis reveals efficient D-galacturonic acid metabolism in the basidiomycete yeast Rhodosporidium toruloides

Protzko, R. J.; Hach, C. A.; Coradetti, S. T.; Hackhofer, M. A.; Magosch, S.; Thieme, N.; Arkin, A. P.; Skerker, J. M.; Dueber, J. E.; Benz, J. P.

10.1101/675652 — systems biology — Posted on 2019-06-21

979 DeepTetrad: high-throughput analysis of meiotic tetrads by deep learning in plants

Lim, E.-C.; Kim, J.; Park, J.; Kim, E.-J.; Kim, J.; Cho, H. S.; Byun, D.; Henderson, I. R.; Copenhaver, G. P.; Hwang, I.; Choi, K.

10.1101/677351 — plant biology — Posted on 2019-06-21

980 Transcriptome analysis reveals the importance of the immune system during early pregnancy in sheep (Ovis aries)

Pokharel, K.; Peippo, J.; Weldenegodguad, M. B.; Honkatukia, M.; Li, M.-H.; Kantanen, J.

10.1101/673558 — genomics — Posted on 2019-06-21

981 Discovery of small molecule antagonists of the USP5 zinc finger ubiquitin-binding domain

Mann, M. K.; Franzoni, I.; Ferreira de Freitas, R.; Tempel, W.; Houliston, S.; Arrowsmith, C. H.; Harding, R. J.; Schapira, M.

10.1101/676668 — pharmacology and toxicology — Posted on 2019-06-21

982 Stop codon-proximal 3′UTR introns in vertebrates can elicit EJC-dependent Nonsense-Mediated mRNA Decay

Gangras, P.; Gallagher, T. L.; Patton, R. D.; Yi, Z.; Parthun, M. A.; Tietz, K. T.; Deans, N. C.; Bundschuh, R.; Amacher, S. L.; Singh, G.

10.1101/677666 — molecular biology — Posted on 2019-06-21

983 Adaptive evolution targets a piRNA precursor transcription network

Parhad, S. S.; Yu, T.; Zhang, G.; Rice, N.; Weng, Z.; Theurkauf, W.

10.1101/678227 — genetics — Posted on 2019-06-21

984 The draft nuclear genome assembly of Eucalyptus pauciflora: new approaches to comparing de novo assemblies

wang, w.; Das, A.; Kainer, D.; Schalamun, M.; Morales Suarez, A.; Schwessinger, B.; Lanfear, R.

10.1101/678730 — genomics — Posted on 2019-06-21

985 H3K9me2 orchestrates inheritance of spatial positioning of peripheral heterochromatin through mitosis

Poleshko, A.; Smith, C. L.; Nguyen, S. C.; Sivaramakrishnan, P.; Murray, J. I.; Lakadamyali, M.; Joyce, E. F.; Jain, R.; Epstein, J. A.

10.1101/678987 — cell biology — Posted on 2019-06-21

986 Principles of self-organization and load adaptation by the actin cytoskeleton during clathrin-mediated endocytosis

Akamatsu, M.; Vasan, R.; Serwas, D.; Ferrin, M.; Rangamani, P.; Drubin, D. G.

10.1101/678797 — cell biology — Posted on 2019-06-21

987 Computational model demonstrates that Ndc80-associated proteins strengthen kinetochore-microtubule attachments in metaphase

Campbell, S.; Amin, M.; Varma, D.; Bidone, T.

10.1101/678789 — cell biology — Posted on 2019-06-21

988 Social bonding, gestural complexity and displacement behaviour of wild chimpanzee

Roberts, A.; Roberts, S.

10.1101/678805 — animal behavior and cognition — Posted on 2019-06-21

989 Hepatitis E Virus infection and waste pickers: a case-control seroprevalence study

Alvarado-Esquivel, C.; Gutierrez-Martinez, V. D.; Ramirez-Valles, E. G.; Sifuentes-Alvarez, A.

10.1101/679076 — microbiology — Posted on 2019-06-21

990 Intracellular cyclic AMP levels modulate differential adaptive responses on epimastigotes and cell culture trypomastigotes of Trypanosoma cruzi

Sternlieb, T.; Schoijet, A. C.; Alonso, G. D.

10.1101/677112 — molecular biology — Posted on 2019-06-21

991 Scale-dependent effects of geography, host ecology, and host genetics on diversity of a stickleback parasite metacommunity

Bolnick, D.; Resetarits, E.; Ballare, K.; Stuart, Y.; Stutz, W.

10.1101/677161 — ecology — Posted on 2019-06-21

992 Degradation of Polycomb Repressive Complex 2 with an EED-targeted Bivalent Chemical Degrader

Potjewyd, F.; Turner, A.-M.; Beri, J.; Rectenwald, J.; Norris-Drouin, J.; Cholensky, S.; Margolis, D.; Pearce, K.; Herring, L.; James, L. I.

10.1101/676965 — cancer biology — Posted on 2019-06-21

993 Defining the microenvironment landscape of bladder cancer using highly multiplexed spatial genomic and proteomic analysis

Reeves, J.; Zhang, Z.; Norgaard, Z. K.; Zhou, D. M.; Gong, J.; Liang, Y.; Das, S.; Warren, S. E.; Korpal, M.; Hoang, M. L.; Beechem, J. M.; Kumar, P.; Rimkunas, V.

10.1101/675926 — cancer biology — Posted on 2019-06-21

994 Cyclophilin A Prevents HIV-1 Restriction in Lymphocytes by Blocking Human TRIM5α Binding to the viral Core

Selyutina, A.; Persaud, M.; Bulnes-Ramos, A.; Buffone, C.; Scoca, V.; Di Nunzio, F.; Hiatt, J.; Krogan, N. J.; Hultquist, J. F.; Diaz-Griffero, F.

10.1101/678037 — microbiology — Posted on 2019-06-21

995 A New Mathematical Model for Tumor Growth, Reduction and Metastasis, Validation with Zebrafish Melanoma and Potential Implications for Dormancy and Recurrence

Lesi, A.; Heilmann, S.; White, R.; Rumschitzki, D. S.

10.1101/676791 — cancer biology — Posted on 2019-06-21

996 Biophysical Basis of Hb-S Polymerization in Red Blood Cell Sickling

Li, W.

10.1101/676957 — biophysics — Posted on 2019-06-21

997 How does individual variation in sociality influence fitness in prairie voles?

Sabol, A. C.; Lambert, C. T.; Keane, B.; Solomon, N. G.; Dantzer, B.

10.1101/676858 — animal behavior and cognition — Posted on 2019-06-21

998 Coxiella burnetii small RNA 12 binds CsrA regulatory protein and transcripts for the CvpD type IV effector, regulates pyrimidine and methionine metabolism, and is necessary for optimal intracellular growth and vacuole formation during infection

Wachter, S.; Bonazzi, M.; Shifflett, K.; Moses, A.; Raghavan, R.; Minnick, M. F.

10.1101/679134 — microbiology — Posted on 2019-06-21

999 Constitutive TRIM22 expression within the respiratory tract identifies tissue-specific and cell-type dependent intrinsic immune barriers to influenza A virus infection

Charman, M.; McFarlane, S.; Wojtus, J. K.; Sloan, E.; Dewar, R.; Leeming, G.; Al-Saadi, M.; Hunter, L.; Carroll, M.; Stewart, J. P.; Digard, P.; Hutchinson, E.; Boutell, C.

10.1101/679159 — immunology — Posted on 2019-06-21

1000 Tbx2a modulates switching of opsin gene expression

Sandkam, B. A.; Campello, L.; O'Brien, C.; Nandamuri, S. P.; Gammerdinger, W.; Conte, M.; Swaroop, A.; Carleton, K. L.

10.1101/676478 — evolutionary biology — Posted on 2019-06-21

1001 The lncRNAs Implicated in Redox Regulation in Ybx1 Deficient Zebrafish Larvae

Huang, C.; Zhu, B.; Leng, D.; Ge, W.; Zhang, X. D.

10.1101/679167 — developmental biology — Posted on 2019-06-21

1002 PfGCN5, a global regulator of stress responsive genes, modulates artemisinin resistance in Plasmodium falciparum

Rawat, M.; Kanyal, A.; Sahasrabudhe, A.; Vembar, S. S.; Lopez-Rubio, J.-J.; Karmodiya, K.

10.1101/679100 — cell biology — Posted on 2019-06-21

1003 Hydrogen exchange of chemoreceptors in functional complexes suggests protein stabilization mediates long-range allosteric coupling

Li, X.; Eyles, S. J.; Thompson, L. K.

10.1101/676783 — biochemistry — Posted on 2019-06-21

1004 Glutamine supports the protection of tissue cells against the damage caused by cholesterol-dependent cytolysins from pathogenic bacteria

Turner, M. L.; Owens, S. E.; Sheldon, I. M.

10.1101/679068 — microbiology — Posted on 2019-06-21

1005 Show me your secret(ed) weapons: a multifaceted approach reveals novel type III-secreted effectors of a plant pathogenic bacterium

Jimenez guerrero, I.; Perez-Montano, F.; da Silva, G. M.; Wagner, N.; Shkedy, D.; Zhao, M.; Pizarro, L.; Bar, M.; Walcott, R.; Sessa, G.; Pupko, T.; Burdman, S.

10.1101/679126 — microbiology — Posted on 2019-06-21

1006 The effect of sample size on polygenic hazard models for prostate cancer

Karunamuni, R.; Huynh-Le, M.-P.; Fan, C.; Eeles, R.; Easton, D.; Kote-Jarai, Z.; Al Olama, A. A.; Garcia, S.; Muir, K.; Gronberg, H.; Wiklund, F.; Aly, M.; Schleutker, J.; Sipeky, C.; Tammela, T.; Nordestgaard, B.; Key, T.; Travis, R.; Neal, D.; Donovan, J.; Hamdy, F.; Pharoah, P.; Pashayan, N.; Khaw, K.-T.; Thibodeau, S.; McDonnell, S.; Schaid, D.; Maier, C.; Vogel, W.; Luedeke, M.; Herkommer, K.; Kibel, A.; Cybulski, C.; Wokolorczyk, D.; Kluzniak, W.; Cannon-Albright, L.; Brenner, H.; Schöttker, B.; Holleczek, B.; Park, J.; Sellers, T.; Lin, H.-Y.; Slavov, C.; Kaneva, R.; Mitev, V.; Batra,

10.1101/679092 — genetics — Posted on 2019-06-21

1007 A Bayesian Zero-Inflated Binomial Regression and Its Application in Dose-Finding Study

Wanitjirattikal, P.; Shi, C.

10.1101/676809 — bioinformatics — Posted on 2019-06-21

1008 Stress-responsive Entamoeba topoisomerase II: a potential anti-amoebic target

Ghosh, S. K.; Varghese, S. S.

10.1101/679118 — biochemistry — Posted on 2019-06-21

1009 SKELETAL MyBP-C ISOFORMS TUNE THE MOLECULAR CONTRACTILITY OF DIVERGENT SKELETAL MUSCLE SYSTEMS

Li, A.; Nelson, S.; Rahmanseresht, S.; Braet, F.; Cornachione, A. S.; Previs, S. B.; O'Leary, T. S.; McNamara, J. W.; Rassier, D. E.; Sadayappan, S.; Previs, M. J.; Warshaw, D. M.

10.1101/676601 — physiology — Posted on 2019-06-21

1010 The genomic impact of European colonization of the Americas

Ongaro, L.; Scliar, M. O.; Flores, R.; Raveane, A.; Marnetto, D.; Sarno, S.; Gnecchi-Ruscone, G. A.; Alarcon-Riquelme, M. E.; Patin, E.; Pongsakorn, P.; Hellenthal, G.; Gonzalez-Santos, M.; King, R. J.; Kouvatsi, A.; Balanovsky, O.; Balanovska, E.; Atramentova, L.; Turdikulova, S.; Mastana, S.; Marjanovic, D.; Kovacevic, L.; Leskovac, A.; Lima-Costa, M. F.; Pereira, A. C.; Barreto, M. L.; Horta, B. L.; Mabunda, N.; May, C. A.; Moreno-Estrada, A.; Achilli, A.; Olivieri, A.; Semino, O.; Tambets, K.; Kivisild, T.; Luiselli, D.; Torroni, A.; Capelli, C.; Tarazona-Santos, E.; Metspalu, M.; Pagani,

10.1101/676437 — genomics — Posted on 2019-06-21

1011 Ramified Rolling Circle Amplification for efficient and flexible synthesis of nucleosomal DNA sequences

van Emmerik, C. L.; Gachulincova, I.; Lobbia, V. R.; Daniels, M. A.; Heus, H. A.; Soufi, A.; Nelissen, F. H. T.; van Ingen, H.

10.1101/676528 — biochemistry — Posted on 2019-06-21

1012 Biofilm formation displays intrinsic offensive and defensive features of Bacillus cereus

Caro-Astorga, J.; Frenzel, E.; Perkins, J. R.; de Vicente, A.; Garcia Ranea, J. A.; Kuipers, O.; Romero, D.

10.1101/676403 — microbiology — Posted on 2019-06-21

1013 Sampling strategies to assess microbial diversity of Antarctic cryptoendolithic communities.

COLEINE, C.; Stajich, J. E.; Pombubpa, N.; Zucconi, L.; Onofri, S.; Selbmann, L.

10.1101/676775 — microbiology — Posted on 2019-06-21

1014 TET1 and TDG suppress intestinal tumorigenesis by down regulating the inflammatory and immune response pathways

Tricarico, R.; Madzo, J.; Scher, G.; Maegawa, S.; Jelinek, J.; Scher, C.; Chang, W.-C.; Nicolas, E.; Zhou, Y.; Slifker, M.; Devarajan, K.; Cai, K. Q.; Nakajima, P.; Xu, J.; Mancuso, P.; Doneddu, V.; Bagella, L. M.; Ingram, J.; Balachandran, S.; Peshkova, I.; Koltsova, E.; Grivennikov, S.; Yen, T. J.; Issa, J.-P.; Bellacosa, A.

10.1101/676445 — cancer biology — Posted on 2019-06-21

1015 A gatekeeping function of the replicative polymerase controls pathway choice in the resolution of lesion-stalled replisomes

Chang, S.; Naiman, K.; Thrall, E. S.; Kath, J. E.; Jergic, S.; Dixon, N.; Fuchs, R. P.; Loparo, J. J.

10.1101/676486 — biochemistry — Posted on 2019-06-21

1016 Cutaneous Wounds in Mice Lacking Tumor Necrosis Factor-stimulated Gene-6 Exhibit Delayed Closure and an Abnormal Inflammatory Response

Shakya, S.; Mack, J. A.; Maytin, E. V.

10.1101/676411 — physiology — Posted on 2019-06-20

1017 Intragenic recruitment of NF-κB drives alternative splicing modifications upon activation by the viral oncogene TAX of HTLV-1.

Ben Ameur, L.; Thenoz, M.; Giraud, G.; Combe, E.; Claude, J.-B.; Lemaire, S.; Fontrodona, N.; Polveche, H.; Bastien, M.; Gessain, A.; Wattel, E.; Bourgeois, C.; Auboeuf, D.; Mortreux, F.

10.1101/676353 — molecular biology — Posted on 2019-06-20

1018 Redox-mediated Kick-Start of Mitochondrial Energy Metabolism drives Resource-efficient Seed Germination

Nietzel, T.; Mostertz, J.; Ruberti, C.; Wagner, S.; Moseler, A.; Fuchs, P.; Mueller-Schuessele, S. J.; Benamar, A.; Poschet, G.; Buettner, M.; Nee, G.; Moller, I. M.; Lillig, C. H.; Macherel, D.; Finkemeier, I.; Wirtz, M.; Hell, R.; Meyer, A. J.; Hochgraefe, F.; Schwarzlaender, M.

10.1101/676213 — plant biology — Posted on 2019-06-20

1019 Gene Loss and Evolution of the Plastome

Mohanta, T. K.; Khan, A.; Khan, A.; Abd_Allah, E. F.; Al-Harrasi, A.

10.1101/676304 — plant biology — Posted on 2019-06-20

1020 A new family of Type VI secretion system-delivered effector proteins displays ion-selective pore-forming activity

Mariano, G.; Trunk, K.; Williams, D. J.; Monlezun, L.; Strahl, H.; Pitt, S. J.; Coulthurst, S. J.

10.1101/676247 — microbiology — Posted on 2019-06-20

1021 A framework for annotation of antigen specificities in high-throughput T-cell repertoire sequencing studies

Pogorelyy, M. V.; Shugay, M.

10.1101/676239 — immunology — Posted on 2019-06-20

1022 Mathematics and the brain - a category theoretic approach to go beyond the neural correlates of consciousness

Northoff, G.; Tsuchiya, N.; Saigo, H.

10.1101/674242 — neuroscience — Posted on 2019-06-20

1023 SOAPTyping: an open-source and cross-platform tool for Sanger sequence-based typing for HLA class I and II alleles

Zhang, Y.; Chen, Y.; Xu, H.; Fang, J.; Zhao, Z.; Hu, W.; Yang, X.; Ye, J.; Cheng, Y.; Wang, J.; Wang, J.; Yang, H.; Yan, J.; Fang, L.

10.1101/674648 — bioinformatics — Posted on 2019-06-20

1024 Stalk Bending Strength is Strongly Associated with Maize Stalk Lodging Incidence Across Multiple Environments

Sekhon, R. S.; Joyner, C. N.; Ackerman, A. J.; McMahan, C. S.; Cook, D. D.; Robertson, D. J.

10.1101/675793 — plant biology — Posted on 2019-06-20

1025 Phosphoprotein-based Biomarkers as Predictors for Cancer Therapy

Carter, A. M.; Tan, C.; Pozo, K.; Telange, R.; Molinaro, R.; Guo, A.; De Rosa, E.; Martinez, J. O.; Zhang, S.; Kumar, N.; Takahashi, M.; Wiederhold, T.; Ghayee, H. K.; Oltmann, S. C.; Pacak, K.; Woltering, E. A.; Hatanpaa, K. J.; Nwariaku, F. E.; Grubbs, E. G.; Gill, A. J.; Robinson, B.; Gillardon, F.; Reddy, S.; Jaskula-Sztul, R.; Mobley, J. A.; Mukhtar, M. S.; Tasciotti, E.; Chen, H.; Bibb, J. A.

10.1101/675637 — cancer biology — Posted on 2019-06-20

1026 Genome assembly and characterization of a complex zfBED-NLR gene-containing disease resistance locus in Carolina Gold Select rice with Nanopore sequencing

Read, A. C.; Moscou, M. J.; Zimin, A. V.; Pertea, G.; Meyer, R. S.; Purugganan, M. D.; Leach, J. E.; Triplett, L. R.; Salzberg, S. L.; Bogdanove, A. J.

10.1101/675678 — plant biology — Posted on 2019-06-20

1027 BOLD Decoding of Individual Pain Anticipation Biases During Uncertainty

Kadlec, M.; Tosun, D.; Strigo, I.

10.1101/675645 — neuroscience — Posted on 2019-06-20

1028 Visual mapping on the brain - caveats for multifocal fMRI

Crewther, D. P.; Seixas, S.; Crewther, S. G.

10.1101/676023 — neuroscience — Posted on 2019-06-20

1029 Long non-coding RNA Gm15441 attenuates hepatic inflammasome activation in response to metabolic stress

Brocker, C. N.; Kim, D.; Melia, T.; Karri, K.; Velenosi, T. J.; Takahashi, S.; Bonzo, J. A.; Waxman, D. J.; Gonzalez, F. J.

10.1101/675785 — molecular biology — Posted on 2019-06-20

1030 Adaptive maintenance of fertility in the face of meiotic drive

Meade, L. C.; Finnegan, S.; Kad, R.; Fowler, K.; Pomiankowski, A.

10.1101/675108 — evolutionary biology — Posted on 2019-06-20

1031 Analysis of the three dimensional structure of the kidney glomerulus capillary network

Terasaki, M.; Brunson, J. C.; Sardi, J.

10.1101/677864 — cell biology — Posted on 2019-06-20

1032 Discovery and Multi-center Verification of Prostate Cancer Protein Biomarkers using Single-shot Short Gradient Microflow SWATH and MRMHR Mass Spectrometry

Sun, R.; Hunter, C.; Chen, C.; Weigang, G.; Morrice, N.; Zhang, Q.; Cai, X.; Wang, B.; Yu, X.; Teng, X.; Chen, L.; Dai, S.; Song, J.; Luan, Z.; Yu, C.; Aebersold, R.; Zhu, Y.; Guo, T.

10.1101/675348 — cancer biology — Posted on 2019-06-20

1033 A Hidden Markov Modeling Approach forIdentifying Tumor Subclones in Next-GenerationSequencing Studies

Choo-Wosoba, H.; Albert, P.; Zhu, B.

10.1101/675512 — cancer biology — Posted on 2019-06-20

1034 Effect of Alpha-Lactalbumin and Lactoferrin Oleic Acid Complexes on Chromatin Structural Organization

Lebedev, D.; Zabrodskaya, Y.; Pipich, V.; Kuklin, A.; Ramsay, E.; Sokolov, A.; Elizarova, A.; Shaldzhyan, A.; Grudinina, N.; Pantina, R.; Wu, B.; Shtam, T.; Volnitskiy, A.; Shmidt, A.; Shvetsov, A.; Isaev-Ivanov, V.; Egorov, V.

10.1101/675223 — biophysics — Posted on 2019-06-20

1035 Comprehensive analysis of human microRNA-mRNA interactome

Plotnikova, O.; Baranova, A.; Skoblov, M.

10.1101/675694 — bioinformatics — Posted on 2019-06-20

1036 Injectable diblock copolypeptide hydrogel provides platform to maintain high local concentrations of taxol and local tumor control.

Garrett, M.; O'Shea, T.; Wollenberg, A.; Bernstein, A.; Hung, D.; Staarman, B.; Soto, H.; Deming, T.; Sofroniew, M.; Kornblum, H.

10.1101/675207 — bioengineering — Posted on 2019-06-20

1037 Hybrid histidine kinase activation by cyclic di-GMP- mediated domain liberation

Dubey, B. N.; Agustoni, E.; Boehm, R.; Kaczmarczyk, A.; Mangia, F.; von Arx, C.; Jenal, U.; Hiller, S.; Plaza-Menacho, I.; Schirmer, T.

10.1101/675454 — biochemistry — Posted on 2019-06-20

1038 Regulation of eIF6 through multisite and sequential phosphorylation by GSK3β

Jungers, C. F.; Elliff, J. M.; Masson-Meyers, D. S.; Phiel, C. J.; Origanti, S.

10.1101/476978 — molecular biology — Posted on 2019-06-20

1039 Cyp26b1 is required for proper airway epithelial differentiation during lung development

Daniel, E.; Sutton, G.; Htike, Y.; Cleaver, O.

10.1101/678581 — developmental biology — Posted on 2019-06-20

1040 Alphavirus nsP3 ADP-ribosylhydrolase Activity Disrupts Stress Granule Formation

Jayabalan, A. K.; Griffin, D. E.; Leung, A. K. L.

10.1101/629881 — cell biology — Posted on 2019-06-20

1041 Recurrent networks can recycle neural resources to flexibly trade speed for accuracy in visual recognition

Spoerer, C. J.; Kietzmann, T. C.; Kriegeskorte, N.

10.1101/677237 — neuroscience — Posted on 2019-06-20

1042 Multi-CD: Multi-scale discovery of Chromatin Domains

Kim, M. H.; Bak, J. H.; Liu, L.; Hyeon, C.

10.1101/530519 — biophysics — Posted on 2019-06-20

1043 A novel network control model for identifying personalized driver genes in cancer

Guo, W.-F.; Zhang, S.-W.; Zeng, T.; Li, Y.; Gao, J.; Chen, L.

10.1101/503565 — systems biology — Posted on 2019-06-20

1044 Choice suppression through opponent but not independent function of the striatal indirect pathway

Delevich, K.; Hoshal, B. D.; Collins, A. G. E.; Wilbrecht, L.

10.1101/675850 — neuroscience — Posted on 2019-06-20

1045 Exploratory Data Analysis in a six-year longitudinal study in healthy brain aging

Gomez-Ramirez, J.; Avila-Villanueva, M.; Frades Payo, B.; Valenti Soler, M.; Zea Sevilla, M. A.; del Ser Quijano, T.; Fernandez-Blazquez, M. A.

10.1101/674853 — neuroscience — Posted on 2019-06-20

1046 Basal forebrain volume reliably predicts the cortical spread of Alzheimer’s degeneration

Fernandez-Cabello, S.; Kronbichler, M.; Van Dijk, K. R. A.; Goodman, J. A.; Spreng, R. N.; Schmitz, T. W.

10.1101/676544 — neuroscience — Posted on 2019-06-20

1047 3D-Cell-Annotator: an open-source active surface tool for single cell segmentation in 3D microscopy images

Tasnadi, E.; Toth, T.; Kovacs, M.; Diosdi, A.; Pampaloni, F.; Molnar, J.; Piccinini, F.; Horvath, P.

10.1101/677294 — bioinformatics — Posted on 2019-06-20

1048 Dedicated setup for the photoconversion of fluorescent dyes for functional electron microscopy.

Dobson, K. L.; Howe, C. L.; Nishimura, Y.; Marra, V.

10.1101/622639 — neuroscience — Posted on 2019-06-20

1049 Demographic history of a remote ichthyofauna assemblage reveals common processes driving colonization and persistence in endemic coral reef fishes

Delrieu-Trottin, E.; Hubert, N.; Giles, E. C.; Chifflet-Belle, P.; Suwalski, A.; Neglia, V.; Rapu-Edmunds, C.; Mona, S.; Saenz-Agudelo, P.

10.1101/672774 — genomics — Posted on 2019-06-20

1050 Concurrent Genome and Epigenome Editing by CRISPR-Mediated Sequence Replacement

Alexander, J.; Findlay, G. M.; Kircher, M.; Shendure, J.

10.1101/675447 — genomics — Posted on 2019-06-20

1051 Modifying Reaction Diffusion: A Numerical Model for Turing Morphogenesis and Ben Jacob Patterns

Trepka, K.

10.1101/370304 — biophysics — Posted on 2019-06-20

1052 Molecular subtyping improves prognostication of Stage 2 colorectal cancer

Purcell, R. V.; Schmeier, S.; Lau, Y. C.; Pearson, J. F.; Frizelle, F. A.

10.1101/674614 — cancer biology — Posted on 2019-06-20

1053 Surpassing the physical Nyquist limit to produce super-resolution cryo-EM reconstructions

Feathers, J. R.; Spoth, K. A.; Fromme, J. C.

10.1101/675397 — biophysics — Posted on 2019-06-20

1054 Using a continuum model to decipher the mechanics of embryonic tissue spreading from time-lapse image sequences: An approximate Bayesian computation approach

Stepien, T.; Lynch, H. E.; Yancey, S. X.; Dempsey, L.; Davidson, L. A.

10.1101/460774 — biophysics — Posted on 2019-06-20

1055 A Human Liver Cell Atlas: Revealing Cell Type Heterogeneity and Adult Liver Progenitors by Single-Cell RNA-sequencing

Aizarani, N.; Saviano, A.; Sagar, ; Mailly, L.; Durand, S.; Pessaux, P.; Baumert, T. F.; Grün, D.

10.1101/649194 — genomics — Posted on 2019-06-20

1056 Using structural analysis to assess the impact of missense variants in MEN1

Caswell, R. C.; Owens, M. M.; Gunning, A. C.; Ellard, S.; Wright, C. F.

10.1101/661512 — genetics — Posted on 2019-06-20

1057 Molecular Determinants of μ-Conotoxin KIIIA interaction with the Voltage-Gated Sodium Channel Nav1.7

Kimball, I. H.; Nguyen, P. T.; Olivera, B. M.; Sack, J. T.; Yarov-Yarovoy, V.

10.1101/654889 — biophysics — Posted on 2019-06-20

1058 Early Stem Cell Aging in the Mature Brain

Ibrayeva, A.; Bay, M.; Pu, E.; Jorg, D.; Peng, L.; Jun, H.; Zhang, N.; Aaron, D.; Lin, C.; Resler, G.; Jang, M.-H.; Simons, B. D.; Bonaguidi, M. A.

10.1101/654608 — neuroscience — Posted on 2019-06-20

1059 Links between central CB1-receptor availability and peripheral endocannabinoids in patients with first episode psychosis

Dickens, A.; Borgan, F.; Laurikainen, H.; Lamichhane, S.; Marques, T.; Ronkko, T.; Veronese, M.; Lindeman, T.; METSY Investigators, ; Hyotylainen, T.; Howes, O.; Hietala, J.; Oresic, M.

10.1101/664086 — neuroscience — Posted on 2019-06-20

1060 Two cases of type-a Haemophilus influenzae meningitis within the same week in the same hospital are phylogenetically unrelated but recently exchanged capsule genes

Terrat, Y.; Farnaes, L.; Bradley, J.; Tromas, N.; Shapiro, B. J.

10.1101/619502 — microbiology — Posted on 2019-06-20

1061 Physiologically driven, altitude-adaptive model for the interpretation of pediatric oxygen saturation at altitudes above 2000 m a.s.l.

Tueshaus, L.; Moreo, M.; Zhang, J.; Hartinger, S. M.; Maeusezahl, D.; Karlen, W.

10.1101/334482 — physiology — Posted on 2019-06-20

1062 Predicting human prospective beliefs and decisions to engage using multivariate classification analyses of behavioural data

Mei, N.; Olafsson, E.; Rankine, S.; Soto, D.

10.1101/607069 — neuroscience — Posted on 2019-06-20

1063 Assembly properties of FtsZ from cyanobacterium Synechocystis sp. PCC 6803

Wang, N.; Bian, L.; Ma, X.; Meng, Y.; Chen, C. S.; Rahman, M. u.; Zhang, T.; Li, Z.; Wang, P.; Chen, Y.

10.1101/677963 — microbiology — Posted on 2019-06-20

1064 Complete genome sequence and annotation of the laboratory reference strain Shigella flexneri serovar 5a M90T and genome-wide transcriptional start site determination

Cervantes-Rivera, R.; Tronnet, S.; Puhar, A.

10.1101/595066 — microbiology — Posted on 2019-06-20

1065 Adaptive introgression during environmental change can weaken reproductive isolation

Owens, G. L.; Samuk, K.

10.1101/553230 — evolutionary biology — Posted on 2019-06-20

1066 Multimodal transcriptional control of pattern formation in embryonic development

Lammers, N. C.; Galstyan, V.; Reimer, A.; Medin, S. A.; Wiggins, C. H.; Garcia, H. G.

10.1101/335919 — developmental biology — Posted on 2019-06-20

1067 Access schedules mediate the impact of high fat diet on ethanol intake and insulin and glucose function in mice.

Coker, C. R.; Aguilar, E. A.; Snyder, A. E.; Bingaman, S. S.; Graziane, N. M.; Browning, K. N.; Arnold, A. C.; Silberman, Y.

10.1101/453761 — animal behavior and cognition — Posted on 2019-06-20

1068 K+ uptake and root-to-shoot allocation in Arabidopsis require coordination of nitrate transporter1/peptide transporter family member NPF6.3/NRT1.1

Fang, X.; Liu, X.; Zhu, Y.; Ye, J.; Jin, C.

10.1101/674903 — plant biology — Posted on 2019-06-20

1069 Orientation-selective adaptation improves perceptual grouping

Pinchuk-Yacobi, N.; Sagi, D.

10.1101/519561 — neuroscience — Posted on 2019-06-20

1070 Biofilm inhibitor taurolithocholic acid alters colony morphology, specialized metabolism, and virulence of Pseudomonas aeruginosa

Condren, A. R.; Kahl, L. J.; Kritikos, G.; Banzhaf, M.; Dietrich, L. E. P.; Sanchez, L. M.

10.1101/675405 — microbiology — Posted on 2019-06-20

1071 Sun exposure drives Antarctic cryptoendolithic community structure and composition.

COLEINE, C.; Stajich, J. E.; Zucconi, L.; Onofri, S.; Selbmann, L.

10.1101/676692 — microbiology — Posted on 2019-06-20

1072 Direct Visualization of Live Zebrafish Glycan via Single-step Metabolic Labeling with Fluorophore-tagged Nucleotide Sugars

Hong, S.; Sahai-Hernandez, P.; Chapla, D. G.; Moremen, K. W.; Traver, D.; Wu, P.

10.1101/548016 — biochemistry — Posted on 2019-06-20

1073 Disinfectant residuals in drinking water systems select for mycobacterial populations with intrinsic antimicrobial resistance.

Sevillano, M. C.; Dai, Z.; Calus, S. T.; Bautista de los Santos, Q. M.; Eren, A. M.; Ijaz, U. Z.; van der Wielen, P. W. J. J.; Pinto, A.

10.1101/675561 — microbiology — Posted on 2019-06-20

1074 How to maintain a high virulence: evolution of a killer in hosts of various susceptibilities.

Chateigner, A.; Moreau, Y.; Jiolle, D.; Pontleve, C.; Labrousse, C.; Bezier, A.; Herniou, E.

10.1101/674994 — evolutionary biology — Posted on 2019-06-20

1075 Floral signals evolve in a predictable way under artificial and pollinator selection in Brassica rapa using a G-matrix

Zu, P.; Schiestl, F. P.; Gervasi, D.; Li, X.; Runcie, D.; Guillaume, F.

10.1101/675413 — evolutionary biology — Posted on 2019-06-20

1076 Long-term impact of intensive postgraduate laboratory training at the Cold Spring Harbor Neurobiology of Drosophila summer course

Ly, S.; Kaun, K.; Lee, C.-H.; Stewart, D.; Pulver, S. R.; Keene, A. C.

10.1101/369892 — scientific communication and education — Posted on 2019-06-20

1077 Metastatic tumor cells exploit their adhesion repertoire to counteract shear forces during intravascular arrest

Osmani, N.; Follain, G.; Garcia-Leon, M. J.; Lefebvre, O.; Busnelli, I.; Larnicol, A.; Harlepp, S.; GOETZ, J. G.

10.1101/443374 — cancer biology — Posted on 2019-06-20

1078 Defining the Subcellular Distribution and Metabolic Channeling of Phosphatidylinositol

Pemberton, J. G.; Kim, Y. J.; Sengupta, N.; Eisenreichova, A.; Toth, D. J.; Boura, E.; Balla, T.

10.1101/677229 — cell biology — Posted on 2019-06-20

1079 Motor cortex can directly drive the globus pallidal neurons in a projection neuron type dependent manner in rat

Karube, F.; Takahashi, S.; Kobayashi, K.; Fujiyama, F.

10.1101/677377 — neuroscience — Posted on 2019-06-20

1080 Mobile phones: The effect of its presence on learning and memory

Tanil, C. T.; Yong, M. H.

10.1101/678094 — animal behavior and cognition — Posted on 2019-06-20

1081 Evaluating Protein Transfer Learning with TAPE

Rao, R.; Bhattacharya, N.; Thomas, N.; Duan, Y.; Chen, X.; Canny, J.; Abbeel, P.; Song, Y. S.

10.1101/676825 — synthetic biology — Posted on 2019-06-20

1082 Intertrial Variability in Human Corticospinal Activity during Grasp Force Planning

Rao, N.; Parikh, P. J.

10.1101/676833 — neuroscience — Posted on 2019-06-20

1083 Mutations of the YidC Insertase alleviate stress from σM-dependent membrane protein overproduction in Bacillus subtilis

Zhao, H.; Sachla, A.; Helmann, J. D.

10.1101/678235 — microbiology — Posted on 2019-06-20

1084 Single-nuclei transcriptomic analysis of the subthalamic nucleus reveals different Pitx2-positive subpopulations

Papathanou, M.; Björklund, A. K.; Martis-Thiele, M.-M.; Wallen-Mackenzie, A.

10.1101/677724 — neuroscience — Posted on 2019-06-20

1085 Restricted and non-essential redundancy of RNAi and piRNA pathways in mouse oocytes

Taborska, E.; Pasulka, J.; Malik, R.; Horvat, F.; Jenickova, I.; Jelic Matosevic, Z.; Svoboda, P.

10.1101/678177 — molecular biology — Posted on 2019-06-20

1086 Diversity begets diversity in microbiomes

Madi, N. J.; Vos, M.; Legendre, P.; Shapiro, B. J.

10.1101/612739 — evolutionary biology — Posted on 2019-06-20

1087 A Comparison of Comorbidities and their Contribution to Medical Resource Utilization for Matched HIV-Infected and Uninfected Individuals: A Cross-Sectional Analysis

Odlum, M.; Yoon, S.

10.1101/678136 — epidemiology — Posted on 2019-06-20

1088 Plant mediated community structure of spring-fed, coastal rivers

Lauretta, M.; Pine, W.; Walters, C.; Frazer, T.

10.1101/678128 — ecology — Posted on 2019-06-20

1089 Pax2a regulates angiogenesis to facilitate fusion of the optic fissure

Weaver, M.; Pereira Piedade, W.; Meshram, N.; Famulski, J.

10.1101/678185 — developmental biology — Posted on 2019-06-20

1090 Recurrent networks can recycle neural resources to flexibly trade speed for accuracy in visual recognition

Spoerer, C. J.; Kietzmann, T. C.; Kriegeskorte, N.

10.1101/677237 — neuroscience — Posted on 2019-06-20

1091 Identifying Novel Roles for Peptidergic Signaling in Mice

Powers, K. G.; Ma, X.-M.; Eipper, B. A.; Mains, R. E.

10.1101/675603 — neuroscience — Posted on 2019-06-20

1092 Firing rate homeostasis occurs in the absence of neuronal activity-regulated transcription

Tyssowski, K.; Letai, K. C.; Rendall, S. D.; Nizhnik, A.; Gray, J. M.

10.1101/675728 — neuroscience — Posted on 2019-06-20

1093 Drosophila Aop imposes a delay on E(spl)-mediated repression of Ato during R8 specification.

Majot, A. T.; Jozwick, L. M.; Bishop, C. P.; Bidwai, A. P.

10.1101/678169 — developmental biology — Posted on 2019-06-20

1094 A History of Chronic Repeated Predation Stress Reduces Aversion to Ethanol Adulteration in Male, but not Female, C57Bl/6J Mice

Shaw, G. A.; Bent, M. A. M.; Council, K. R.; Pais, A. C.; Amstadter, A.; Wolstenholme, J. T.; Miles, M. F.; Neigh, G.

10.1101/677146 — neuroscience — Posted on 2019-06-20

1095 NeuroPAL: A Neuronal Polychromatic Atlas of Landmarks for Whole-Brain Imaging in C. elegans

Yemini, E.; Lin, A.; Nejatbakhsh, A.; Varol, E.; Sun, R.; Mena, G. E.; Samuel, A. D.; Paninski, L.; Venkatachalam, V.; Hobert, O.

10.1101/676312 — neuroscience — Posted on 2019-06-20

1096 Complete single neuron reconstruction reveals morphological diversity in molecularly defined claustral and cortical neuron types

Wang, Y.; Xie, P.; Gong, H.; Zhou, Z.; Kuang, X.; Wang, Y.; Li, A.-a.; Li, Y.; Liu, L.; Veldman, M. B.; Daigle, T. L.; Hirokawa, K. E.; Qu, L.; Lesnar, P.; Jiang, S.; Yu, Y.; Wakeman, W.; Zeng, S.; Li, X.; Yuan, J.; Nguyen, T. N.; Larsen, R.; Kedebe, S.; Song, Y.; Yin, L.; Zhao, S.; Feiner, A.; Shen, E.; Hill, C.; Wang, Q.; Mok, S.; Sunkin, S. M.; Huang, Z. J.; Esposito, L.; Yao, Z.; Hawrylycz, M. J.; Tasic, B.; Ng, L.; Sorensen, S. A.; Yang, X. W.; Harris, J. A.; Koch, C.; Luo, Q.; Peng, H.; Zeng, H.

10.1101/675280 — neuroscience — Posted on 2019-06-20

1097 Category-Selective Visual Regions Have Distinctive Signatures of Connectivity in Early Infancy

Cabral, L.; Zubiaurre, L.; Wild, C.; Linke, A.; Cusack, R.

10.1101/675421 — neuroscience — Posted on 2019-06-20

1098 Atypical brain-to-brain synchronization during listening to continuous natural speech in dyslexia

Thiede, A.; Glerean, E.; Kujala, T.; Parkkonen, L.

10.1101/677674 — neuroscience — Posted on 2019-06-20

1099 The expression of equine keratins K42 and K124 is restricted to the hoof epidermal lamellae of Equus caballus

Armstrong, C.; Cassimeris, L.; Da Silva Santos, C.; Micoogullari, Y.; Wagner, B.; Babasyan, S.; Brooks, S.; GALANTINO-HOMER, H.

10.1101/678102 — cell biology — Posted on 2019-06-20

1100 Kinetochore capture by spindle microtubules: why fission yeast may prefer pivoting to search-and-capture

Nayak, I.; Das, D.; Nandi, A.

10.1101/673723 — biophysics — Posted on 2019-06-20

1101 Basal forebrain volume selectively and reliably predicts the cortical spread of Alzheimer’s degeneration

Fernandez-Cabello, S.; Kronbichler, M.; Van Dijk, K. R. A.; Goodman, J. A.; Spreng, R. N.; Schmitz, T.

10.1101/676544 — neuroscience — Posted on 2019-06-20

1102 Does alpha phase modulate visual target detection? Three experiments with tACS phase-based stimulus presentation.

de Graaf, T. A.; Thomson, A.; Janssens, S. E. W.; van Bree, S.; ten Oever, S.; Sack, A. T.

10.1101/675264 — neuroscience — Posted on 2019-06-20

1103 Increased task-dependent functional connectivity by stimulation of the hippocampal network predicts memory enhancement

Warren, K. N.; Hermiller, M. S.; Nilakantan, A. S.; Voss, J. L.

10.1101/676643 — neuroscience — Posted on 2019-06-20

1104 A novel approach for combining task-dependent gamma with alpha and beta power modulation for enhanced identification of eloquent cortical areas using ECoG in patients with medical-refractory epilepsy

Archila-Melendez, M. E.; Valente, G.; Gommer, E.; Rouhl, R. P. W.; Schijns, O. E. M. G.; Dings, J. T. A.; Hilkman, D. M. W.; Jansma, B. M.; van Kranen-Mastenbroek, V. H. J. M.; Roberts, M. J.

10.1101/677195 — neuroscience — Posted on 2019-06-20

1105 Normative cerebral cortical thickness for human visual areas

Alvarez, I.; Parker, A. J.; Bridge, H.

10.1101/676726 — neuroscience — Posted on 2019-06-20

1106 Stereoscopic Rendering in a Head Mounted Display Elicits Higher Functional Connectivity During Virtual Reality

Forlim, C.; Bittner, L.; Mostajeran, F.; Steinicke, F.; Gallinat, J.; Kuehn, S.

10.1101/675710 — neuroscience — Posted on 2019-06-20

1107 Altered White Matter Microstructural Organization in Post-Traumatic Stress Disorder across 3,049 Adults: Results from the PGC-ENIGMA PTSD Consortium

Dennis, E.; Disner, S. E.; Fani, N.; Salminen, L. E.; Logue, M.; Clarke-Rubright, E. K.; Haswell, C. C.; Averill, C.; Baugh, L. A.; Bomyea, J.; Bruce, S. E.; Cha, J.; Choi, K.; Davenport, N. D.; Densmore, M.; du Plessis, S.; Forster, G. L.; Frijling, J. L.; Gonenc, A.; Gruber, S.; Grupe, D. W.; Guenette, J. P.; Hayes, J.; Hofmann, D.; Ipser, J.; Jovanovic, T.; Kelly, S.; Kennis, M.; Kinzel, P.; Koch, S. B.; Koerte, I.; Koopowitz, S.; Korgaonkar, M.; Krystal, J.; Lebois, L. A.; Li, G.; Magnotta, V. A.; Manthey, A.; May, G. J.; Menefee, D. S.; Nawijn, L.; Nelson, S. M.; Neufeld, R. W.; Nitschke,

10.1101/677153 — neuroscience — Posted on 2019-06-20

1108 Does the neuronal noise in cortex help generalization?

Hu, B. H.; Shang, J.; Iyer, R.; Siegle, J.; Mihalas, S.

10.1101/676999 — neuroscience — Posted on 2019-06-20

1109 Hippocampal Neuron Functional Phenotype Influences the Stability of Its Neural Code

Kinsky, N. R.; Mau, W.; Sullivan, D. W.; Levy, S. J.; Ruesch, E. A.; Hasselmo, M. E.

10.1101/676593 — neuroscience — Posted on 2019-06-20

1110 Light responses of melanopsin-expressing ganglion cells in the foetal mammalian retina

Verweij, J.; Chaney, S.; Bredl, D.; Vemaraju, S.; Konig, G.; Kostenis, E.; Lang, R.; Copenhagen, D.

10.1101/675702 — neuroscience — Posted on 2019-06-20

1111 Abbreviated assessment of psychopathology in patients with suspected seizure disorders

Malpas, C. B.; Wang, A.; Leong, M.; Johnstone, B.; Rayner, G.; Kalincik, T.; Kwan, P.; O'Brien, T. J.; Velakoulis, D.

10.1101/677278 — neuroscience — Posted on 2019-06-20

1112 Astrocyte subdomains respond independently in vivo

Lopez Hidalgo, M.; Kellner, V.; Schummers, J.

10.1101/675769 — neuroscience — Posted on 2019-06-20

1113 Multimodal fusion of structural and functional brain imaging in depression using linked independent component analysis

Maglanoc, L. A.; Kaufmann, T.; Jonassen, R.; Hilland, E.; Beck, D.; Landro, N. I.; Westlye, L. T.

10.1101/676536 — neuroscience — Posted on 2019-06-20

1114 Specific connectivity with Operculum 3 (OP3) brain region in acoustic trauma tinnitus: a seed-based resting state fMRI study

Job, A.; Kavounoudias, A.; Jaroszynski, C.; Jaillard, A.; Delon-Martin, C.

10.1101/676429 — neuroscience — Posted on 2019-06-20

1115 Unscrambling Fluorophore Blinking for Comprehensive Cluster Detection via Photoactivated Localization Microscopy

Rossboth, B. K.; Platzer, R.; Sevcsik, E.; Baumgart, F.; Stockinger, H.; Schuetz, G. J.; Huppa, J. B.; Brameshuber, M.

10.1101/545152 — biophysics — Posted on 2019-06-20

1116 Genotype-free demultiplexing of pooled single-cell RNA-Seq

10.1101/570614 — bioinformatics — Posted on 2019-06-20

1117 Locus-coeruleus norepinephrine activity gates sensory-evoked awakenings from sleep

Hayat, H.; Regev, N.; Matosevich, N.; Sales, A.; Paredes-Rodriguez, E.; Krom, A. J.; Bergman, L.; Li, Y.; Lavigne, M.; Kremer, E. J.; Yizhar, O.; Pickering, A. E.; Nir, Y.

10.1101/539502 — neuroscience — Posted on 2019-06-20

1118 Targeting the Autonomic Nervous System Balance in Patients with Chronic Low Back Pain using Transcranial Alternating Current Stimulation: A Randomized, Crossover, Double-Blind, Placebo-Controlled Pilot Study

Prim, J. H.; Ahn, S.; Davila, M. I.; Alexander, M. L.; McCulloch, K. L.; Frohlich, F.

10.1101/668541 — clinical trials — Posted on 2019-06-20

1119 Unique PKD like protein kinase in Entamoeba histolytica regulates vital actin mediated processes

Ghosh, S. K.; Baidya, M.; Nayak, S.; Das, A. K.

10.1101/677500 — cell biology — Posted on 2019-06-20

1120 Multiple steps mediate ventricular layer attrition to form the adult mouse spinal cord central canal

Canizares, M. A.; Rodrigo Albors, A.; Singer, G. A.; Suttie, N.; Gorkic, M.; Felts, P.; Storey, K. G.

10.1101/676767 — developmental biology — Posted on 2019-06-20

1121 MKS-NPHP module proteins regulate ciliary shedding in Paramecium

Gogendeau, D.; Lemullois, M.; Aubusson-Fleury, A.; Arnaiz, O.; Cohen, J.; Vesque, C.; Schneider-Maunoury, S.; Koll, F.; Tassin, A.-M.

10.1101/676395 — cell biology — Posted on 2019-06-20

1122 Mechanistic and compositional studies of the autophagy-inducing areca nut ingredient

Liu, Y.-C.; Chiu, C.-T.; Liu, S.-Y.; Yen, C.-Y.; Tsai, M.-T.; Chang, H.-C.; Lin, M.-H.

10.1101/669648 — cancer biology — Posted on 2019-06-20

1123 Precise transcription timing by a second-messenger drives a bacterial G1/S cell cycle transition

Kaczmarczyk, A.; Hempel, A. M.; von Arx, C.; Boehm, R.; Dubey, B. N.; Nesper, J.; Schirmer, T.; Hiller, S.; Jenal, U.

10.1101/675330 — microbiology — Posted on 2019-06-20

1124 Molecular determinants of the Ska-Ndc80 interaction and their influence on microtubule tracking and force-coupling

Huis in 't Veld, P. J.; Volkov, V.; Stender, I.; Musacchio, A.; Dogterom, M.

10.1101/675363 — molecular biology — Posted on 2019-06-20

1125 Host mucin is subverted by Pseudomonas aeruginosa during infection to provide free glycans required for successful colonization

Hoffman, C. L.; Aballay, A.

10.1101/675538 — microbiology — Posted on 2019-06-20

1126 A classification framework for Bacillus anthracis defined by global genomic structure

Bruce, S. A.; Schiraldi, N. J.; Kamath, P.; Easterday, W. R.; Turner, W. C.

10.1101/675249 — genomics — Posted on 2019-06-20

1127 Higher fitness yeast genotypes are less robust to deleterious mutations

Johnson, M. S.; Martsul, A.; Kryazhimskiy, S.; Desai, M. M.

10.1101/675314 — evolutionary biology — Posted on 2019-06-20

1128 Understanding social behaviour in mammals: Kin structure and roost fidelity in greater noctule bats

Santos, J. G. N. D.; Meyer, C.; Ibanez, C.; Popa-Lisseanu, A.; Juste, J.

10.1101/675215 — ecology — Posted on 2019-06-20

1129 3D-Cell-Annotator: an open-source active surface tool for single cell segmentation in 3D microscopy images

Tasnadi, E.; Toth, T.; Kovacs, M.; Diosdi, A.; Pampaloni, F.; Molnar, J.; Piccinini, F.; Horvath, P.

10.1101/677294 — bioinformatics — Posted on 2019-06-19

1130 hunchback promoters can readout morphogenetic positional information in less than a minute

Desponds, J.; Vergassola, M.; Walczak, A. M.

10.1101/676684 — biophysics — Posted on 2019-06-19

1131 Tailoring cryo-electron microscopy grids by photo-micropatterning for in-cell structural studies

Toro-Nahuelpan, M.; Zagoriy, I.; Senger, F.; Blanchoin, L.; Thery, M.; Mahamid, J.

10.1101/676189 — cell biology — Posted on 2019-06-19

1132 Lateral Subunit Coupling Determines Intermediate Filament Mechanics

Lorenz, C.; Forsting, J.; Schepers, A. V.; Kraxner, J.; Bauch, S.; Witt, H.; Klumpp, S.; Koester, S.

10.1101/676197 — biophysics — Posted on 2019-06-19

1133 Mapping Co-regulation Pathways among Ligand Binding sites in RyR1

Chirasani, V. R.; Popov, K. I.; Meissner, G.; Dokholyan, N. V.

10.1101/676841 — biophysics — Posted on 2019-06-19

1134 Motility induced fracture reveals a ductile to brittle crossover in the epithelial tissues of a simple animal

Prakash, V.; Bull, M. S.; Prakash, M.

10.1101/676866 — biophysics — Posted on 2019-06-19

1135 Phosphorylation of multiple proteins involved in ciliogenesis by Tau Tubulin kinase 2

Bernatik, O.; Pejskova, P.; Vyslouzil, D.; Hanakova, K.; Zdrahal, Z.; Cajanek, L.

10.1101/676338 — cell biology — Posted on 2019-06-19

1136 Surpassing the physical Nyquist limit to produce super-resolution cryo-EM reconstructions

Feathers, J. R.; Spoth, K. A.; Fromme, J. C.

10.1101/675397 — biophysics — Posted on 2019-06-19

1137 Epidermal Growth Factor (EGF) single mutants highlighted by a homologs cross-conservation approach differentially affect the EGF Receptor (EGFR) downstream pathway

Merzhakupova, D.; pascarelli, s.; Laurino, P.

10.1101/677393 — bioinformatics — Posted on 2019-06-19

1138 CD44 inhibits α-SMA gene expression via a novel G-actin/MRTF mediated pathway that requires TGFβR/p38MAPK activity in murine skin fibroblasts.

Wang, Y.; Mack, J. A.; Maytin, E. V.

10.1101/676635 — cell biology — Posted on 2019-06-19

1139 Probing the Subcellular Distribution of Phosphatidylinositol Reveals a Surprising Lack at the Plasma Membrane

Zewe, J.; Miller, A.; Sangappa, S.; Wills, R.; Goulden, B.; Hammond, G. R.

10.1101/677039 — cell biology — Posted on 2019-06-19

1140 Tangential flow microfluidics for the capture and release of nanoparticles and extracellular vesicles on conventional and ultrathin membranes

Dehghani, M.; Lucas, K.; Flax, J.; McGrath, J. L.; Gaborski, T.

10.1101/675488 — bioengineering — Posted on 2019-06-19

1141 Aequorea victoria’s secrets

Lambert, G. G.; Depernet, H.; Gotthard, G.; Schultz, D. T.; Navizet, l.; Lambert, T.; Bindels, D. S.; Levesque, V.; Nero Moffatt, J. N.; Salih, A.; Royant, A.; Shaner, N. C.

10.1101/677344 — biochemistry — Posted on 2019-06-19

1142 LFMD: a new likelihood-based method to detect low-frequency mutations without molecular tags

Ye, R.; Ruan, J.; Zhuang, X.; Qi, Y.; An, Y.; Xu, J.; Mak, T.; Liu, X.; Yang, H.; Xu, X.; Baum, L.; Nie, C.; Sham, P. C.

10.1101/617381 — bioinformatics — Posted on 2019-06-19

1143 Modular structure of human olfactory receptor codes reflects the bases of odor perception

Bak, J. H.; Jang, S.; Hyeon, C.

10.1101/525287 — neuroscience — Posted on 2019-06-19

1144 NEURAL POPULATION DYNAMICS IN MOTOR CORTEX ARE DIFFERENT FOR REACH AND GRASP

Suresh, A. K.; Goodman, J. M.; Okorokova, E. V.; Kaufman, M. T.; Hatsopoulos, N. G.; Bensmaia, S. J.

10.1101/667196 — neuroscience — Posted on 2019-06-19

1145 Studies on the mechanism of general anesthesia

Pavel, M. A.; Petersen, E. N.; Wang, H.; Lerner, R. A.; Hansen, S. B.

10.1101/313973 — neuroscience — Posted on 2019-06-19

1146 Machine learning-based detection of insertions and deletions in the human genome

Curnin, C.; Goldfeder, R. L.; Marwaha, S.; Bonner, D.; Waggott, D.; Undiagnosed Diseases Network, ; Wheeler, M. T.; Ashley, E. A.

10.1101/628222 — bioinformatics — Posted on 2019-06-19

1147 A microtubule RELION-based pipeline for cryo-EM image processing

Cook, A. D.; Manka, S. W.; Wang, S.; Moores, C.; Atherton, J.

10.1101/673566 — molecular biology — Posted on 2019-06-19

1148 Concurrent Genome and Epigenome Editing by CRISPR-Mediated Sequence Replacement

Alexander, J.; Findlay, G.; Kircher, M.; Shendure, J.

10.1101/675447 — genomics — Posted on 2019-06-19

1149 Cochlear activity in silent cue-target intervals shows a theta rhythmic-pattern and is correlated to attentional alpha modulations

Koehler, M. H. A.; Demarchi, G.; Weisz, N.

10.1101/653311 — neuroscience — Posted on 2019-06-19

1150 Cocaine experience abolishes the motivation suppressing effect of CRF in the ventral midbrain

Oliva, I.; Donate, M. M.; Lefner, M. J.; Wanat, M. J.

10.1101/655936 — neuroscience — Posted on 2019-06-19

1151 Transcranial focused ultrasound enhances behavioral and network mechanisms underlying response inhibition in humans

Fine, J. M.; Fini, M.; Mysore, A. S.; Tyler, W.; Santello, M.

10.1101/649665 — neuroscience — Posted on 2019-06-19

1152 Transcranial alternating current stimulation attenuates BOLD adaptation and increases functional connectivity

Kar, K.; Ito, T.; Cole, M. W.; Krekelberg, B.

10.1101/630368 — neuroscience — Posted on 2019-06-19

1153 A bidirectional network for appetite control in zebrafish

Wee, C. L.; Song, E. Y.; Johnson, R. E.; Ailani, D.; Randlett, O.; Kim, J.; Nikitchenko, M.; Bahl, A.; Yang, C.-T.; Ahrens, M.; Kawakami, K.; Engert, F.; Kunes, S.

10.1101/631341 — neuroscience — Posted on 2019-06-19

1154 Genomic profiling of 553 uncharacterized neurodevelopment patients reveals a high proportion of recessive pathogenic variant carriers in an outbred population

Lee, Y.; Park, S.; Lee, J. S.; Kim, S. Y.; Cho, J.; Yoo, Y.; Lee, S.; Yoo, T.; Lee, M.; Seo, J.; Lee, J.; Kneissl, J.; Lee, J.; Jeon, H.; Jeon, E. Y.; Hong, S. E.; Kim, E.; Kim, H.; Kim, W. J.; Kim, J. S.; Ko, J. M.; Cho, A.; Lim, B. C.; Kim, W. S.; Choi, M.; Chae, J.-H.

10.1101/675868 — genetics — Posted on 2019-06-19

1155 Genotype-free demultiplexing of pooled single-cell RNA-Seq

Xu, J.; Falconer, C.; Nguyen, Q.; Crawford, J.; McKinnon, B. D.; Mortlock, S.-A.; Pebay, A.; Hewitt, A. W.; Senabouth, A.; Palpant, N.; Chiu, H.; Andersen, S.; Montgomery, G. W.; Powell, J.; Coin, L.

10.1101/570614 — bioinformatics — Posted on 2019-06-19

1156 Easy Kinetics: a software that simplify enzymes kinetics characterization

Morabito, G.

10.1101/674051 — biochemistry — Posted on 2019-06-19

1157 Reliability and Reproducibility of T1-weighted images for Development Studies: comparing MPRAGE and Prospective Motion Correction with Volumetric Navigators

Ai, L.; Craddock, R. C.; Tottenham, N.; Dyke, J. D.; Colcombe, S.; Milham, M.; Franco, A. R.

10.1101/666289 — neuroscience — Posted on 2019-06-19

1158 Analysis of meiosis in Pristionchus pacificus reveals plasticity in homolog pairing and synapsis in the nematode lineage

Rillo-Bohn, R.; Adilardi, R.; Avsaroglu, B.; Stevens, L.; Kohler, S.; Bayes, J.; Wang, C.; Lin, S.; Baskevitch, K.; Dernburg, A. F.

10.1101/662049 — cell biology — Posted on 2019-06-19

1159 Prospects for transcranial temporal interference stimulation in humans: a computational study

Rampersad, S.; Roig-Solvas, B.; Yarossi, M.; Kulkarni, P. P.; Santarnecchi, E.; Dorval, A. D.; Brooks, D. H.

10.1101/602102 — biophysics — Posted on 2019-06-19

1160 yacrd and fpa: upstream tools for long-read genome assembly

Marijon, P.; Chikhi, R.; Varre, J.-S.

10.1101/674036 — bioinformatics — Posted on 2019-06-19

1161 Optimal recovery of missing values for non-negative matrix factorization

Chen, R.; Varshney, L. R.

10.1101/647560 — bioinformatics — Posted on 2019-06-19

1162 Emotionotopy: Gradients encode emotion dimensions in right temporo-parietal territories

Lettieri, G.; Handjaras, G.; Ricciardi, E.; Leo, A.; Papale, P.; Betta, M.; Pietrini, P.; Cecchetti, L.

10.1101/463166 — neuroscience — Posted on 2019-06-19

1163 Differences in high-definition transcranial direct current stimulation over the motor hotspot versus the premotor cortex on motor network excitability

Lefebvre, S.; Jann, K.; Schmiesing, A.; Ito, K.; Jog, M.; Schweighofer, N.; Wang, D. J.; Liew, S.-L.

10.1101/487488 — neuroscience — Posted on 2019-06-19

1164 Distinct functional roles for hopanoid composition in the chemical tolerance of Zymomonas mobilis

Brenac, L.; Baidoo, E.; Keasling, J. D.; Budin, I.

10.1101/443473 — microbiology — Posted on 2019-06-19

1165 High residual prevalence of vaccine-serotype Streptococcus pneumoniae carriage after introduction of a pneumococcal conjugate vaccine in Malawi: a prospective serial cross-sectional study

Swarthout, T. D.; Fronterre, C.; Lourenco, J.; Obolski, U.; Gori, A.; Bar-Zeev, N.; Everett, D.; Kamng'ona, A. W.; Mwalukomo, T. S.; Mataya, A. A.; Mwansambo, C.; Banda, M.; Gupta, S.; Diggle, P.; French, N.; Heyderman, R. S.

10.1101/445999 — epidemiology — Posted on 2019-06-19

1166 Phylogeography and Evolutionary analysis of African Rotavirus A genotype G12 reveals district genetic diversification within Lineage III

Motayo, B. O.; Oluwasemowo, O. O.; Olusola, B. A.; Opayele, A.; Faneye, A. O.

10.1101/591297 — epidemiology — Posted on 2019-06-19

1167 Contrasting patterns of ERK activation in the tail of the striatum in response to aversive and rewarding signals

Gangarossa, G.; Castell, L.; Castro, L.; Tarot, P.; Veyrunes, F.; Vincent, P.; Bertaso, F.; Valjent, E.

10.1101/533299 — neuroscience — Posted on 2019-06-19

1168 Enduring and sex-specific changes in hippocampal gene expression after a subchronic immune challenge

Tchessalova, D.; Tronson, N. C.

10.1101/566570 — neuroscience — Posted on 2019-06-19

1169 Francisella novicida Cas9 interrogates genomic DNA with very high specificity and can be used for mammalian genome editing

Acharya, S.; Mishra, A.; Paul, D.; Ansari, A. H.; Azhar, M.; Kumar, M.; Rauthan, R.; Sharma, N.; Aich, M.; Sinha, D.; Sharma, S.; Jain, S.; Ray, A.; Jain, S.; Ramalingam, S.; Maiti, S.; Chakraborty, D.

10.1101/591263 — molecular biology — Posted on 2019-06-19

1170 Common biomarkers of vertebrate senescence respond to age variation in the invertebrate Armadillidium vulgare

Depeux, C.; Samba-Louaka, A.; Becking, T.; Braquart-Varnier, C.; Moreau, J.; Lemaitre, J.-F.; Laverre, T.; Paulhac, H.; Dechaume-Montcharmont, F.-X.; Gaillard, J.-M.; Beltran-Bech, S.

10.1101/583914 — evolutionary biology — Posted on 2019-06-19

1171 Embodiment is related to better performance on an immersive brain computer interface in head-mounted virtual reality: A pilot study

Juliano, J. M.; Spicer, R. P.; Vourvopoulos, A.; Lefebvre, S.; Jann, K.; Ard, T.; Santarnecchi, E.; Krum, D. M.; Liew, S.-L.

10.1101/578682 — neuroscience — Posted on 2019-06-19

1172 Regulation of eIF6 through multisite and sequential phosphorylation by GSK3β

Jungers, C. F.; Elliff, J. M.; Masson-Meyers, D. S.; Phiel, C. J.; Origanti, S.

10.1101/476978 — molecular biology — Posted on 2019-06-19

1173 Genetic drift in range expansions is very sensitive to density feedback in dispersal and growth

Birzu, G.; Matin, S.; Hallatschek, O.; Korolev, K. S.

10.1101/565986 — evolutionary biology — Posted on 2019-06-19

1174 Information theory as a consistent framework for quantification and classification of landscape patterns

Nowosad, J.; Stepinski, T.

10.1101/383281 — ecology — Posted on 2019-06-19

1175 scID: Identification of equivalent transcriptional cell populations across single cell RNA-seq data using discriminant analysis

Boufea, K.; Seth, S.; Batada, N. N.

10.1101/470203 — bioinformatics — Posted on 2019-06-19

1176 Hemispheric asymmetry of globus pallidus relates to alpha modulation in reward-related attentional tasks

Mazzetti, C.; Staudigl, T.; Marshall, T. R.; Fallon, S. J.; Zumer, J. M.; Jensen, O.

10.1101/303016 — neuroscience — Posted on 2019-06-19

1177 Genetic Determinants of Cortical Structure (Thickness, Surface Area and Volumes) among Disease Free Adults in the CHARGE Consortium

Hofer, E.; Roshchupkin, G. V.; Adams, H.; Knol, M.; Lin, H.; Li, S.; Zare, H.; Ahmad, S.; Armstrong, N.; Satizabal, C.; Bernard, M.; Bis, J.; Gillespie, N.; Luciano, M.; Mishra, A.; Scholz, M.; Teumer, A.; Xia, R.; Jian, X.; Mosley, T.; Saba, Y.; Pirpamer, L.; Seiler, S.; Becker, J.; Carmichael, O.; Rotter, J.; Psaty, B.; Lopez, O.; Amin, N.; Lee, S.; Yang, Q.; Himali, J.; Maillard, P.; Beiser, A.; DeCarli, C.; Karama, S.; Lewis, L.; Bastin, M.; Harris, M.; Deary, I.; Witte, V.; Beyer, F.; Loeffler, M.; Mather, K.; Schofield, P.; Thalamuthu, A.; Kwok, J.; Wright, M.; Ames, D.; Trollor, J.; Jia

10.1101/409649 — genetics — Posted on 2019-06-19

1178 Uniquely excitable neurons enable precise and persistent information transmission through the retrosplenial cortex

Brennan, E. K.; Sudhakar, S. K.; Jedrasiak-Cape, I.; Ahmed, O. J.

10.1101/673954 — neuroscience — Posted on 2019-06-19

1179 Perlin Noise Generation of Physiologically Realistic Patterns of Fibrosis

Jakes, D.; Burrage, K.; Drovandi, C. C.; Burrage, P.; Bueno-Orovio, A.; dos Santos, R. W.; Rodriguez, B.; Lawson, B. A. J.

10.1101/668848 — physiology — Posted on 2019-06-19

1180 Congruency effects can compensate for deficits of healthy older adults in crossmodal integration

Higgen, F. L.; Heine, C.; Krawinkel, L.; Goeschl, F.; Engel, A. K.; Hummel, F. C.; Xue, G.; Gerloff, C.

10.1101/673491 — neuroscience — Posted on 2019-06-19

1181 Apathy is associated with reduced precision of prior beliefs about action outcomes

Hezemans, F. H.; Wolpe, N.; Rowe, J. B.

10.1101/672113 — neuroscience — Posted on 2019-06-19

1182 Using background noise to improve sound localization following simulated hearing loss

Ryan-Warden, L.; Ng, E.; Keating, P.

10.1101/673806 — neuroscience — Posted on 2019-06-19

1183 Gene expression-based identification of antigen-responsive CD8+ T cells on a single-cell level

Fuchs, Y. F.; Sharma, V.; Eugster, A.; Kraus, G.; Morgenstern, R.; Dahl, A.; Reinhardt, S.; Petzold, A.; Lindner, A.; Loebel, D.; Bonifacio, E.

10.1101/673707 — immunology — Posted on 2019-06-19

1184 Identification of antibodies targeting the H3N2 hemagglutinin receptor binding site following vaccination of humans

Zost, S. J.; Lee, J.; Gumina, M. E.; Parkhouse, K.; Henry, C.; Wilson, P. C.; Bloom, J. D.; Hensley, S. E.

10.1101/675272 — microbiology — Posted on 2019-06-19

1185 Controlling Strawberry Mites: Comparison of New Bio-Pesticides and Conventional Chemical Pesticides

Zhu, J.; Li, Z.; Ren, Z.; Cao, A.; Yan, D.; Wang, Q.; Ouyang, C.; Li, Y.; Jiahong Zhu{ddagger}, Zhuo Li{ddagger}, Zongjie Ren,,

10.1101/677138 — biochemistry — Posted on 2019-06-19

1186 Activation of Shigella flexneri type 3 secretion requires a host-induced conformational change to the translocon pore

Russo, B. C.; Duncan, J. K.; Wiscovitch, A. L.; Hachey, A. C.; Goldberg, M. B.

10.1101/677120 — microbiology — Posted on 2019-06-19

1187 The NALCN regulator UNC-80 functions in a subset of interneurons to affect C. elegans avoidance response to the plant hormone methyl salicylate.

Zhou, C.; Luo, J.; He, X.; Zhou, Q.; He, Y.; Wang, X.; MA, L.

10.1101/677070 — genetics — Posted on 2019-06-19

1188 Modeling cross-regulatory influences on monolignol transcripts and proteins under single and combinatorial gene knockdowns in Populus trichocarpa

Matthews, M. L.; Wang, J. P.; Sederoff, R.; Chiang, V. L.; Williams, C.

10.1101/677047 — systems biology — Posted on 2019-06-19

1189 Trickle infection and immunity to Trichuris muris

Glover, M.; Colombo, S. A. P.; Thornton, D. J.; Grencis, R. K.

10.1101/677096 — immunology — Posted on 2019-06-19

1190 The relative transmissibility of shigellosis among male and female individuals in Hubei Province, China: a modelling study

Zhao, Z.; Chen, Q.; Zhao, B.; Hannah, M. N.; Wang, N.; Wang, Y.; Xuan, X.; Rui, J.; Chu, M.; Wang, Y.; Liu, X.; An, R.; Pan, L.; Chiang, Y.-C.; Su, Y.; Zhao, B.; Chen, T.

10.1101/677088 — epidemiology — Posted on 2019-06-19

1191 Depletion of Ric-8B leads to reduced mTORC2 activity

Nagai, M. H.; Gutiyama, L. M.; Xavier, V. P. S.; Machado, C. F.; Reis, A. H.; Donnard, E. R.; Galante, P. A. F.; Abreu, J. G.; Festuccia, W. T.; Malnic, B.

10.1101/677054 — molecular biology — Posted on 2019-06-19

1192 Mannan detecting C-type lectin receptor probes recognise immune epitopes with diverse chemical, spatial and phylogenetic heterogeneity in fungal cell walls

Vendele, I.; Willment, J. A.; Silva, L. M.; Palma, A. S.; Chai, W.; Liu, Y.; Feizi, T.; Stappers, M. H. T.; Brown, G. D.; Gow, N. A. R.

10.1101/677104 — microbiology — Posted on 2019-06-19

1193 Polymorphism analyses and protein modelling inform on functional specialization of Piwi clade genes in the arboviral vector Aedes albopictus

Marconcini, M.; Hernandez, L.; Iovino, G.; Houe, V.; Valerio, F.; Palatini, U.; Pischedda, E.; Crawford, J. E.; Carballar-Lejarazu, R.; Ometto, L.; Forneris, F.; Failloux, A.-B.; Bonizzoni, M.

10.1101/677062 — evolutionary biology — Posted on 2019-06-19

1194 Quantifying transmission of emerging zoonoses: Using mathematical models to maximize the value of surveillance data

Ambrose, M.; Kucharski, A. J.; Formenty, P.; Muyembe-Tamfum, J.-J.; Rimoin, A. W.; Lloyd-Smith, J. O.

10.1101/677021 — epidemiology — Posted on 2019-06-19

1195 Large-scale, dynamin-like motions of the human guanylate binding protein 1 revealed by multi-resolution simulations

Barz, B.; Loschwitz, J.; Strodel, B.

10.1101/676981 — biophysics — Posted on 2019-06-19

1196 Computational and robotic modeling reveal parsimonious combinations of interactions between individuals in schooling fish

Lei, L.; Escobedo, R.; Sire, C.; Theraulaz, G.

10.1101/677005 — animal behavior and cognition — Posted on 2019-06-19

1197 From seed to flour: sowing sustainability in the use of cantaloupe melon residue (Cucumis melo L. var. reticulatus)

SEABRA, L. M. J.; Cunha, J. A.; Nabas, R. C.; Rolim, P. M.; Damasceno, K. F. d. S. C.; Sousa Junior, F. C.

10.1101/676916 — scientific communication and education — Posted on 2019-06-19

1198 Stochastic Modeling Reveals Kinetic Heterogeneity in Post-replication DNA Methylation

Busto-Moner, L.; Morival, J.; Fahim, A.; Reitz, Z.; Downing, T. L.; Read, E. L.

10.1101/677013 — genomics — Posted on 2019-06-19

1199 Potential Autoimmune Association between Benign Paroxysmal Positional Vertigo and Immune-mediated Skin Conditions: Population-based Cohort Study

Hahn, H. J.; Kwak, S. G.; Kim, D.-K.; Kim, J.-Y.

10.1101/676973 — epidemiology — Posted on 2019-06-19

1200 A live-cell screen for altered Erk dynamics reveals principles of proliferative control

Goglia, A. G.; Wilson, M. Z.; Silbert, J.; Jena, S.; Devenport, D.; Toettcher, J. E.

10.1101/675736 — cell biology — Posted on 2019-06-19

1201 Oncoprotein GT198 is a direct target of taxol

Yang, Z.; Gurvich, V. J.; Gupta, M. L.; Mivechi, N. F.; Ko, L.

10.1101/675579 — pharmacology and toxicology — Posted on 2019-06-19

1202 Rituximab treatment for IgA vasculitis: A systematic review

Chamorro, A. J.; Carbonell, C.; Miron-Canelo, J.-A.; Diez-Ruiz, S.; Marcos, M.

10.1101/676908 — pharmacology and toxicology — Posted on 2019-06-19

1203 Comparative in silico analysis of ftsZ gene from different bacteria reveals the preference for core set of codons in coding sequence structuring and secondary structural elements determination

Pal, A.; Saha, B. K.; Saha, J.

10.1101/676932 — bioinformatics — Posted on 2019-06-19

1204 ENABLING STABLE COEXISTENCE BY MODIFYING THE ENVIRONMENT

Pastor, A.; Nuno, J. C.; Olarrea, J.; de Vicente, J.

10.1101/676890 — evolutionary biology — Posted on 2019-06-19

1205 Tuberculosis treatment outcome: The case of women in Ethiopia and China, Ten-Years Retrospective Cohort study

Ma, X.; Gebremeskel, M.; Alemayehu, B.; Mingwang, F.

10.1101/676924 — epidemiology — Posted on 2019-06-19

1206 HYPERsol: flash-frozen results from archival FFPE tissue for clinical proteomics

Marchione, D. M.; Ilieva, I.; Garcia, B. A.; Pappin, D. J.; Wilson, J. P.; Wojcik, J. B.

10.1101/632315 — cancer biology — Posted on 2019-06-19

1207 A workflow for visualizing human cancer biopsies using large-format electron microscopy

Riesterer, J. L.; Lopez, C. S.; Stempinski, E. S.; Williams, M.; Loftis, K.; Stoltz, K.; Thibault, G.; Lanicault, C.; Williams, T.; Gray, J. W.

10.1101/675371 — cancer biology — Posted on 2019-06-19

1208 The Hippo network kinase STK38 contributes to protein homeostasis by inhibiting BAG3-mediated autophagy

Klimek, C.; Jahnke, R.; Wördehoff, J.; Kathage, B.; Stadel, D.; Behrends, C.; Hergovich, A.; Höhfeld, J.

10.1101/458323 — cell biology — Posted on 2019-06-19

1209 Single-cell based elucidation of molecularly-distinct glioblastoma states and drug sensitivity

Ding, H.; Burgenske, D. M.; Zhao, W.; Subramaniam, P. S.; Bakken, K. K.; He, L.; Alvarez, M. J.; Laise, P.; Paull, E. O.; Spinazzi, E. F.; Dovas, A.; Marie, T.; Upadhyayula, P.; Dela Cruz, F.; Diolaiti, D.; Kung, A.; Bruce, J. N.; Canoll, P.; Sims, P. A.; Sarkaria, J. N.; Califano, A.

10.1101/675439 — systems biology — Posted on 2019-06-19

1210 Dynamic centriolar relocalization of Polo kinase and Centrobin in early mitosis primes centrosomeasymmetry in fly neural stem cells

Gallaud, E.; Ramdas Nair, A.; Horsley, N.; Monnard, A.; Singh, P.; Pham, T.; Salvador Garcia, D.; Ferrand, A.; Cabernard, C.

10.1101/249375 — cell biology — Posted on 2019-06-19

1211 Compensatory sequence variation between trans-species small RNAs and their target sites

Johnson, N. R.; dePamphilis, C. W.; Axtell, M. J.

10.1101/675900 — plant biology — Posted on 2019-06-19

1212 Three quantitative trait loci explain more than 60% of phenotypic variation for chill coma recovery time in Drosophila ananassae

Grath, S.; Königer, A.; Arif, S.

10.1101/676262 — evolutionary biology — Posted on 2019-06-19

1213 Interactions in milk suggest a physiological role for β-lactoglobulin

Crowther, J. M.; Broadhurst, M.; Laue, T. M.; Jameson, G. B.; Hodgkinson, A. J.; Dobson, R.

10.1101/675587 — biophysics — Posted on 2019-06-19

1214 Peroxiredoxin promotes longevity and H2O2-resistance in yeast through redox-modification of PKA

Molin, M.; Roger, F.; Picazo, C.; Asami, C.; Reiter, W.; Hanzen, S.; Gao, C.; Lagniel, G.; Welkenhuysen, N.; Labarre, J.; Nyström, T.; Grotli, M.; Hartl, M.

10.1101/676270 — biochemistry — Posted on 2019-06-19

1215 Choice suppression through opponent but not independent function of the striatal indirect pathway

Delevich, K.; Hoshal, B. D.; Collins, A. G. E.; Wilbrecht, L.

10.1101/675850 — neuroscience — Posted on 2019-06-19

1216 Genomic profiling of 553 uncharacterized neurodevelopment patients reveals a high proportion of recessive pathogenic variant carriers in an outbred population

Lee, Y.; Park, S.; Lee, J.; Kim, S.; Cho, J.; Yoo, Y.; Lee, S.; Yoo, T.; Lee, M.; Seo, J.; Lee, J.; Kneissl, J.; Lee, J.; Jeon, H.; Jeon, E.; Hong, S.; Kim, E.; Kim, H.; Kim, W.; Kim, J.; Ko, J.; Cho, A.; Lim, B.; Kim, W.; Choi, M.; Chae, J.-H.

10.1101/675868 — genetics — Posted on 2019-06-19

1217 An epitranscriptomic switch at the 5′-UTR controls genome selection during HIV-1 genomic RNA packaging

Pereira-Montecinos, C.; Toro-Ascuy, D.; Rojas-Fuentes, C.; Riquelme-Barrios, S.; Rojas-Araya, B.; Garcia-de-Gracia, F.; Aguilera-Cortes, P.; Ananias-Saez, C.; de Bisschop, G.; Jonas, C.; Acevedo, M. L.; Sargueil, B.; Valiente-Echeverria, F.; Soto-Rifo, R.

10.1101/676031 — molecular biology — Posted on 2019-06-19

1218 Chromosome-scale assembly comparison of the Korean Reference Genome KOREF from PromethION and PacBio with Hi-C mapping information

Kim, H.-S.; Jeon, S.; Kim, C.; Kim, Y. K.; Cho, Y. S.; Blazyte, A.; Manica, A.; Lee, S.; Bhak, J.

10.1101/674804 — genomics — Posted on 2019-06-19

1219 Metaecosystem dynamics drive community composition in experimental multi-layered spatial networks

Harvey, E.; Gounand, I.; Fronhofer, E. A.; Altermatt, F.

10.1101/675256 — ecology — Posted on 2019-06-19

1220 Aneuploidy Spectrum Analysis as a Primer for Copy Number Profiling of Cancer Cells

Khalil, A. I. S.; Chattopadhyay, A.; Sanyal, A.

10.1101/674929 — bioinformatics — Posted on 2019-06-19

1221 Multidimensional Associations between Cognition and Connectome Organization in Temporal Lobe Epilepsy

Rodriguez-Cruces, R.; Bernhardt, B. C.; Concha, L.

10.1101/675884 — neuroscience — Posted on 2019-06-19

1222 Concurrent Genome and Epigenome Editing by CRISPR-Mediated Sequence Replacement

Alexander, J.; Findlay, G.; Kircher, M.; Shendure, J.

10.1101/675447 — genomics — Posted on 2019-06-19

1223 Towards a gold standard for benchmarking gene set enrichment analysis

Geistlinger, L.; Csaba, G.; Santarelli, M.; Ramos, M.; Schiffer, L.; Law, C. W.; Turaga, N.; Davis, S.; Carey, V.; Morgan, M.; Zimmer, R.; Waldron, L.

10.1101/674267 — bioinformatics — Posted on 2019-06-19

1224 Engineered illumination devices for optogenetic control of cellular signaling dynamics

Repina, N. A.; McClave, T.; Bao, X.; Kane, R. S.; Schaffer, D. V.

10.1101/675892 — bioengineering — Posted on 2019-06-19

1225 NemaLife: A structured microfluidic culture device optimized for aging studies in crawling C. elegans

Rahman, M.; Edwards, H.; Birze, N.; Gabrilska, R.; Rumbaugh, K. P.; Blawzdziewicz, J.; Szewczyk, N.; Driscoll, M.; Vanapalli, S. A.

10.1101/675827 — bioengineering — Posted on 2019-06-19

1226 The Molecular and Microbial Microenvironments in Chronically Diseased Lungs

Garg, N.; Melnik, A. V.; Vasquez-Baeza, Y.; Aksenov, A.; Hyde, E. R.; McAvoy, A. C.; Wang, M.; da Silva, R.; Protsyuk, I.; Wu, J. V.; Bouslimani, A.; Lim, Y. W.; Luzzatto-Knaan, T.; Comstock, W.; Quinn, R. A.; Wong, R.; Humphrey, G.; Ackermann, G.; Spivey, T.; Brouha, S. S.; Bandeira, N.; Lin, G. Y.; Rohwer, F.; Conrad, D.; Alexandrov, T.; Dorrestein, P. C.; Knight, R.

10.1101/676148 — microbiology — Posted on 2019-06-19

1227 Differential Allele-Specific Expression Uncovers Breast Cancer Genes Dysregulated By Cis Noncoding Mutations

Przytycki, P. F.; Singh, M.

10.1101/675462 — bioinformatics — Posted on 2019-06-19

1228 COMPASS: a COMprehensive Platform for smAll RNA-Seq data analySis

Li, J.; Kho, A. T.; Chase, R. P.; Rubino, L. P.; Farnam, L.; Amr, S. S.; Tantisira, K. G.

10.1101/675777 — bioinformatics — Posted on 2019-06-19

1229 ShinyLearner: A containerized benchmarking tool for machine-learning classification of tabular data

Piccolo, S. R.; Lee, T. J.; Suh, E.; Hill, K.

10.1101/675181 — bioinformatics — Posted on 2019-06-19

1230 Neonatal brain-directed gene therapy rescues a mouse model of neurodegenerative CLN6 Batten disease

kleine Holthaus, S.-M.; Herranz-Martin, S.; Massaro, G.; Aristorena, M.; Hoke, J.; Hughes, M. P.; Maswood, R.; Semenyuk, O.; Basche, M.; Shah, A. Z.; Klaska, I. P.; Smith, A. J.; Mole, S. E.; Rahim, A. A.; Ali, R. R.

10.1101/673848 — neuroscience — Posted on 2019-06-19

1231 Passenger Hotspot Mutations in Cancer

Hess, J. M.; Bernards, A.; Kim, J.; Miller, M.; Taylor-Weiner, A.; Haradhvala, N. J.; Lawrence, M. S.; Getz, G.

10.1101/675801 — genomics — Posted on 2019-06-19

1232 Prolonged ovarian storage of mature Drosophila oocytes dramatically increases meiotic spindle instability

Greenblatt, E. J.; Obniski, R.; Mical, C.; Spradling, A. C.

10.1101/675389 — developmental biology — Posted on 2019-06-19

1233 Prospective Isolation of Chondroprogenitors from Human iPSCs Based on Cell Surface Markers Identified using a CRISPR-Cas9-Generated Reporter

Dicks, A.; Wu, C.-L.; Steward, N.; Adkar, S. S.; Gersbach, C. A.; Guilak, F.

10.1101/675983 — cell biology — Posted on 2019-06-19

1234 Meaningful patterns of information in the brain revealed through analysis of errors

Woolgar, A.; Dermody, N.; Afshar, S.; Williams, M. A.; Rich, A. N.

10.1101/673681 — neuroscience — Posted on 2019-06-19

1235 SiaABCD - A threonine phosphorylation pathway that controls biofilm formation in Pseudomonas aeruginosa

Poh, W.-H.; Lin, J.; Colley, B.; Müller, N.; Goh, B. C.; Schleheck, D.; Marquardt, A.; Liang, Y.; Kjelleberg, S.; Lescar, J.; Rice, S. A.; Klebensberger, J.

10.1101/674879 — microbiology — Posted on 2019-06-19

1236 How heterogeneous thymic output and homeostatic proliferation shape naive T cell receptor clone abundance distributions

Dessalles, R.; D'Orsogna, M.; Chou, T.

10.1101/674937 — immunology — Posted on 2019-06-19

1237 Phylogeny of Paullinia L. (Paullinieae: Sapindaceae), a diverse genus of lianas with rapid fruit evolution

Chery, J. G.; Acevedo-Rodriguez, P.; Rothfels, C. J.; Specht, C. D.

10.1101/673988 — evolutionary biology — Posted on 2019-06-19

1238 Terasaki Spiral Ramps and Intracellular Diffusion

Huber, G.; Wilkinson, M.

10.1101/675165 — biophysics — Posted on 2019-06-19

1239 Genomes of intracellular Leishmania parasites directly sequenced from patients

Domagalska, M. A.; Imamura, H.; Sanders, M.; Van den Broeck, F.; Bhattarai, N. R.; Vanaerschot, M.; Maes, I.; D'Haenens, E.; Rai, K.; Rijal, S.; Berriman, M.; Cotton, J. A.; Dujardin, J.-C.

10.1101/676163 — microbiology — Posted on 2019-06-19

1240 Metagenomic Nanopore sequencing of influenza virus direct from clinical respiratory samples

Lewandowski, K.; Xu, Y.; Pullan, S. T.; Foster, D.; Sanderson, N. D.; Vaughan, A.; Morgan, M.; Bright, N.; Kavanagh, J.; Vipond, R. T.; Carroll, M. W.; Marriott, A. C.; Gooch, K. E.; Andersson, M.; Jeffery, K.; Peto, T. E. A.; Crook, D. W.; Walker, A. S.; Matthews, P. C.

10.1101/676155 — microbiology — Posted on 2019-06-19

1241 Network Topology Dynamics of Circulating Biomarkers and Cognitive Performance in Older Cytomegalovirus-seropositive or -seronegative Men and Women

Di Benedetto, S.; Mueller, L.; Rauskolb, S.; Sendtner, M.; Fassnacht, M.; Pawelec, G.; Mueller, V.

10.1101/673905 — immunology — Posted on 2019-06-19

1242 Impact of herbivore preference on the benefit of plant trait variability

Thiel, T.; Gaschler, S.; Mody, K.; Bluthgen, N.; Drossel, B.

10.1101/670158 — ecology — Posted on 2019-06-19

1243 Symmetry breaking transition towards directional locomotion in Physarum microplasmodia

Zhang, S.; Lasheras, J. C.; del Alamo, J. C.

10.1101/675942 — biophysics — Posted on 2019-06-19

1244 Transcriptome Dynamics Reveals Progressive Transition from Effector to Memory in CD4+ T cells.

Soon, M. S. F.; Lee, H. J.; Engel, J. A.; Straube, J.; Thomas, B. S.; Clarke, L. S.; Laohamonthonkul, P.; Pernold, C. P. S.; Haldar, R. N.; Williams, C. G.; Lansink, L. I. M.; Koufariotis, R.; Lakis, V.; Wood, S.; Chen, X.; James, K. R.; Lönnberg, T.; Lane, S. W.; Davenport, M. P.; Khoury, D. S.; Svensson, V.; Teichmann, S. A.; Haque, A.

10.1101/675967 — immunology — Posted on 2019-06-19

1245 In situ analysis of mucus residing bacterial community reveals an ecological niche key for gut microbiome stability

Duncan, K.; Carey Ewend, K.; vaishnava, s.

10.1101/675918 — ecology — Posted on 2019-06-19

1246 Adiabatic invariants drive rhythmic human motion in variable gravity

Boulanger, N.; Buisseret, F.; Dehouck, V.; Dierick, F.; White, O.

10.1101/674143 — biophysics — Posted on 2019-06-19

1247 Identifying Combinations of Cancer Drivers in Individual Patients.

Klein, M. I.; Cannataro, V. L.; Townsend, J. P.; Stern, D. F.; Zhao, H.

10.1101/674234 — bioinformatics — Posted on 2019-06-19

1248 Manipulation of Seedling Traits with Pulsed Light in Closed Controlled Environments

Song, S.; Kusuma, P.; Carvalho, S. D.; Li, Y.; Folta, K. M.

10.1101/674432 — plant biology — Posted on 2019-06-19

1249 Older adults demonstrate interlimb transfer of reactive gait adaptations to repeated unexpected gait perturbations

McCrum, C.; Karamanidis, K.; Grevendonk, L.; Zijlstra, W.; Meijer, K.

10.1101/673574 — neuroscience — Posted on 2019-06-19

1250 Novelty gates memory formation through ventro-dorsal hippocampal interaction

Fredes, F.; Silva, M. A.; Kobayashi, K.; Koppensteiner, P.; Joesch, M.; Shigemoto, R.

10.1101/673871 — neuroscience — Posted on 2019-06-19

1251 A neuronal signature for monogamous reunion

Scribner, J. L.; Vance, E.; Protter, D. S. W.; Saslow, E.; Cameron, R.; Klein, E.; Jimenez, J. C.; Kheirbek, M. A.; Donaldson, Z.

10.1101/675959 — neuroscience — Posted on 2019-06-19

1252 A Genome Model Linking Birth Defects to Infections

Friedenson, B. A.

10.1101/674093 — genomics — Posted on 2019-06-19

1253 Intergenerational transmission of education and ADHD: Effects of parental genotypes

de Zeeuw, E. L.; Hottenga, J.-J.; Ouwens, K. G.; Dolan, C. V.; Ehli, E. A.; Davies, G. E.; Boomsma, D. I.; van Bergen, E.

10.1101/664128 — genomics — Posted on 2019-06-19

1254 Pathognomonic and epistatic genetic alterations in B-cell non-Hodgkin lymphoma

Ma, M. C. J.; Tadros, S.; Bouska, A.; Heavican, T.; Yang, H.; Deng, Q.; Moore, D.; Akhter, A.; Hartert, K.; Jain, N.; Showell, J.; Ghosh, S.; Street, L.; Davidson, M.; Carey, C.; Tobin, J.; Perumal, D.; Vose, J.; Lunning, M.; Sohani, A.; Chen, B.; Buckley, S.; Nastoupil, L.; Davis, R. E.; Westin, J.; Fowler, N.; Parekh, S.; Gandhi, M.; Neelapu, S.; Stewart, D.; Iqbal, J.; Rodig, S.; Mansoor, A.; Green, M.

10.1101/674259 — genomics — Posted on 2019-06-19

1255 Mendelian randomization indicates that TNF is not causally associated with Alzheimer’s disease

Andrews, S. J.; Goate, A.

10.1101/673749 — genetics — Posted on 2019-06-19

1256 Critiquing Protein Family Classification Models Using Sufficient Input Subsets

Carter, B.; Bileschi, M. L.; Smith, J.; Sanderson, T.; Bryant, D.; Belanger, D.; Colwell, L. J.

10.1101/674119 — bioinformatics — Posted on 2019-06-19

1257 Neural Multi-Scale Self-Supervised Registration for Echocardiogram Dense Tracking

Zhu, W.; Huang, Y.; Vannan, M. A.; Liu, S.; Xu, D.; Fan, W.; Qian, Z.; Xie, X.

10.1101/674630 — bioengineering — Posted on 2019-06-19

1258 ForageGrassBase: Molecular resource for the forage grass Festuca pratensis Huds.

Antony Samy, J. K.; Kovi, M. R.; Rognli, O. A.

10.1101/674390 — plant biology — Posted on 2019-06-19

1259 GWAS of Over 427,000 Individuals Establishes GABAergic and Synaptic Molecular Pathways as Key for Cognitive Executive Functions

Hatoum, A. S.; Mitchell, E. C.; Morrison, C. L.; Evans, L. M.; Keller, M. C.; Friedman, N. P.

10.1101/674515 — neuroscience — Posted on 2019-06-19

1260 Catabolism of alkylphenols in Rhodococcus via a meta-cleavage pathway associated with genomic islands

Levy-Booth, D. J.; Fetherolf, M. M.; Stewart, G.; Liu, J.; Eltis, L. D.; Mohn, W. W.

10.1101/674713 — microbiology — Posted on 2019-06-19

1261 Autonomous drones are a viable tool for acoustic bat surveys

August, T.; Moore, T.

10.1101/673772 — ecology — Posted on 2019-06-19

1262 Invariance in ecological pattern

Frank, S. A.; Bascompte, J.

10.1101/673590 — ecology — Posted on 2019-06-19

1263 Community turnover by composition and climate affinity across scales in an alpine system

Smithers, B. V.; Oldfather, M. F.; Koontz, M. J.; Bishop, J.; Bishop, C.; Nachlinger, J.; Sheth, S. N.

10.1101/659169 — ecology — Posted on 2019-06-19

1264 The histopathological staging of tau, but not amyloid, corresponds to antemortem cognitive status, dementia stage, functional abilities, and neuropsychiatric symptoms

Malpas, C. B.; Sharmin, S.; Kalincik, T.

10.1101/671651 — neuroscience — Posted on 2019-06-19

1265 Leveraging eQTLs to identify individual-level tissue of interest for a complex trait

Majumdar, A.; Giambartolomei, C.; Cai, N.; Kumar Freund, M.; Haldar, T.; Schwarz, T.; Flint, J.; Pasaniuc, B.

10.1101/674226 — genetics — Posted on 2019-06-19

1266 Rapid range shifts in African Anopheles mosquitoes over the last century

Carlson, C. J.; Bannon, E.; Mendenhall, E.; Newfield, T.; Bansal, S.

10.1101/673913 — ecology — Posted on 2019-06-19

1267 Mitochondrial DNA Copy Number (mtDNA-CN) Can Influence Mortality and Cardiovascular Disease via Methylation of Nuclear DNA CpGs

Castellani, C. A.; Longchamps, R. J.; Sumpter, J. A.; Newcomb, C. E.; Lane, J. A.; Grove, M. L.; Bressler, J.; Brody, J. A.; Floyd, J. S.; Bartz, T. M.; Taylor, K. D.; Wang, P.; Tin, A.; Coresh, J.; Pankow, J. S.; Fornage, M.; Guallar, E.; O'Rourke, B.; Pankratz, N.; Liu, C.; Levy, D.; Sotoodehnia, N.; Boerwinkle, E.; Arking, D. E.

10.1101/673293 — genomics — Posted on 2019-06-19

1268 Estimations of the weather effects on brain functions using functional MRI - a cautionary tale

Di, X.; Wolfer, M.; Kuhn, S. B.; Zhang, Z.; Biswal, B. B.

10.1101/646695 — neuroscience — Posted on 2019-06-18

1269 Serological and metagenomic interrogation of cerebrospinal fluid implicates enteroviruses in pediatric acute flaccid myelitis

Schubert, R. D.; Hawes, I.; Ramachandran, P. S.; Ramesh, A.; Crawford, E. D.; Pak, J. E.; Wu, W.; Cheung, C. K.; O'Donovan, B. D.; Tato, C. M.; Lyden, A.; Tan, M.; Sit, R.; Sowa, G.; Sample, H. A.; Zorn, K. C.; Banerji, D.; Khan, L. M.; Bove, R.; Hauser, S. L.; Gelfand, A. A.; Johnson-Kerner, B.; Nash, K.; Krishnamoorthy, K. S.; Chitnis, T.; Ding, J. Z.; McMillan, H. J.; Chiu, C. Y.; Briggs, B.; Glaser, C. A.; Yen, C.; Chu, V.; Wadford, D. A.; Dominguez, S. R.; Ng, T. F. F.; Marine, R. L.; Lopez, A. S.; Nix, W. A.; Soldatos, A.; Gorman, M.; Benson, L.; Messacar, K.; Konopka-Anstadt, J. L.; Ob

10.1101/666230 — microbiology — Posted on 2019-06-19

1270 Immunoglobulin heavy chains are sufficient to determine most B cell clonal relationships

Zhou, J. Q.; Kleinstein, S. H.

10.1101/665760 — immunology — Posted on 2019-06-18

1271 Large-scale in-vitro production of red blood cells from human peripheral blood mononuclear cells

Heshusius, S. J.; Heideveld, E.; Burger, P.; Thiel-Valkhof, M.; Sellink, E.; Varga, E.; Ovchynnikova, E.; Visser, A.; Martens, J. H.; von Lindern, M. M.; van den Akker, E. M.

10.1101/659862 — cell biology — Posted on 2019-06-18

1272 Inhibition stabilization is a widespread property of cortical networks

Sanzeni, A. H.; Akitake, B.; Goldbach, H. C.; Leedy, C. E.; Brunel, N.; Histed, M. H.

10.1101/656710 — neuroscience — Posted on 2019-06-18

1273 Network Synchronization and Synchrony Propagation:Emergent Elements of Inspiration

Ashhad, S.; Feldman, J. L.

10.1101/664946 — neuroscience — Posted on 2019-06-18

1274 The Avocado Genome Informs Deep Angiosperm Phylogeny, Highlights Introgressive Hybridization, and Reveals Pathogen Influenced Gene Space Adaptation

Rendon-Anaya, M.; Ibarra-Laclette, E.; Mendez Bravo, A.; Lan, T.; Zheng, C.; Carretero-Paulet, L.; Perez-Torres, C. A.; Chacon-Lopez, A.; Hernandez-Guzman, G.; Chang, T.-H.; Farr, K.; Barbazuk, W. B.; Chamala, S.; Mutwil, M.; Shivhare, D.; Alvarez-Ponce, D.; Mitter, N.; Hayward, A.; Fletcher, S.; Rozas, J.; Sanchez Gracia, A.; Kuhn, D.; Barrientos-Priego, A. F.; Salojarvi, J.; Librado, P.; Sankoff, D.; Herrera-Estrella, A.; Albert, V. A.; Herrera-Estrella, L.

10.1101/654285 — genomics — Posted on 2019-06-18

1275 The Non-random Location of Autosomal Genes that Participate in X Inactivation

Migeon, B. R.

10.1101/669929 — genetics — Posted on 2019-06-18

1276 Expanding The CRISPR Toolbox With Mad7 In Zebrafish And Human Cells

Wierson, W. A.; Simone, B. W.; WareJoncas, Z. C.; Mann, C.; Welker, J. M.; Kar, B.; Gendron, W. A. C.; Barry, M. A.; Clark, K. J.; Dobbs, D.; McGrail, M. A.; Ekker, S. C.; Essner, J. C.

10.1101/650515 — genetics — Posted on 2019-06-18

1277 Inheritance of Chromatin Proteins in Budding Yeast: metabolic gene regulators TUP1, FPR4 and Rpd3L are retained in the mother cell.

Vasseur, P.; Tonazzini, S.; Rubert Castro, F.; Sucec, I.; El Koulali, K.; Urbach, S.; Radman-Livaja, M.

10.1101/644138 — cell biology — Posted on 2019-06-18

1278 BAMscale: quantification of DNA sequencing peaks and generation of scaled coverage tracks

Pongor, L. S.; Gross, J. M.; Vera Alvarez, R.; Murai, J.; Jang, S.-M.; Zhang, H.; Redon, C.; Fu, H.; Huang, S.-Y.; Thakur, B.; Baris, A.; Marino-Ramirez, L.; Landsman, D.; Mirit, A. I.; Pommier, Y.

10.1101/669275 — bioinformatics — Posted on 2019-06-18

1279 Molecular Cloning and Functional Analysis of the UV-B Photoreceptor Gene ZmUVR8 (UVR8 Response locus), from Zea Mays.

Fernandez, M. B.; Lamattina, L.; Cassia, R.

10.1101/649905 — plant biology — Posted on 2019-06-18

1280 Insulin-like growth factor 1 receptor signaling in tenocytes is required for adult tendon growth

Disser, N. P.; Sugg, K. B.; Talarek, J. R.; Sarver, D. C.; Rourke, B. J.; Mendias, C. L.

10.1101/670026 — physiology — Posted on 2019-06-18

1281 Diversity of fall armyworm, Spodoptera frugiperda and their gut bacterial community in Kenya

Gichuhi, J.; Sevgan, S.; Khamis, F. M.; van den Berg, J.; du Plessis, H.; Ekesi, S.; Herren, J.

10.1101/664987 — molecular biology — Posted on 2019-06-18

1282 Interplay of primary bovine lymphocytes and Mycobacterium avium subsp. paratuberculosis shows distinctly different proteome changes and immune pathways in host-pathogen interaction

Kleinwort, K. J. H.; Hauck, S. M.; Degroote, R. L.; Lutterberg, K.; Scholz, A. M.; Hoelzel, C.; Maertlbauer, E. P.; Deeg, C. A.

10.1101/578187 — immunology — Posted on 2019-06-18

1283 Characterizing the innate and adaptive responses of immunized mice to Bordetella pertussis infection using in vivo imaging and transcriptomic analysis

Boehm, D. T.; Varney, M. E.; Wong, T. Y.; Nowak, E. S.; Sen-Kilic, E.; Hall, J. M.; Bradford, S. D.; Begley, K. A.; Bevere, J. U.; Epperly, M. S.; Maynard, J. A.; Hewlett, E. L.; Barbier, M.; Damron, F. H.

10.1101/674408 — immunology — Posted on 2019-06-18

1284 Context-dependent requirement of H3K9 methyltransferase activity during cellular reprogramming to iPSCs

Vidal, S.; Polyzos, A.; Morales Valencia, J.; Wang, H.; Swanzey, E.; Ee, L.-s.; Amlani, B.; Tu, S.; Gong, Y.; Snetkova, V.; Skok, J. A.; Tsirigos, A.; Kim, S.; Apostolou, E.; Stadtfeld, M.

10.1101/634949 — developmental biology — Posted on 2019-06-18

1285 Neuron-Glial Antigen 2 (NG2)-based Glial Induction ofHuman BMSCs: A fast & safe glial progenitor cell-based therapy for congenital myelin disorders of the central nervous system

Lam, G.; Shea, G. K.-H.; Wu, K. L. K.; Li, M. T.-S.; Kwok, C. H.; Wong, C. Y.; Tsui, A. Y. P.; Shum, D. K. Y.; Chan, Y. S.

10.1101/658997 — neuroscience — Posted on 2019-06-18

1286 Familial t(1;11) translocation is associated with disruption of white matter structural integrity and oligodendrocyte-myelin dysfunction

Vasistha, N. A.; Johnstone, M.; Barton, S.; Mayerl, S.; Thangaraj, B.; Thomson, P. A.; Dando, O.; Grunewald, E.; Alloza, C.; Bastin, M.; Livesey, M.; Economides, K.; Magnani, D.; Makedonopolou, P.; Burr, K.; Story, D.; Blackwood, D.; Wyllie, D.; McIntosh, A. M.; Millar, K. M.; ffrench-Constant, C.; Hardingham, G.; Lawrie, S.; Chandran, S.

10.1101/657163 — neuroscience — Posted on 2019-06-18

1287 Transgenerational plasticity of inducible defenses: combined effects of grand-parental, parental and current environments

Tariel, J.; Plenet, S.; Luquet, E.

10.1101/589945 — evolutionary biology — Posted on 2019-06-18

1288 DNA barcodes reveal inconsistent species boundaries in rose gall wasps Diplolepis and their inquilines Periclistus (Hymenoptera: Cynipidae)

Zhang, Y. M.; Laszlo, Z.; Looney, C.; Denes, A.-L.; Hanner, R. H.; Shorthouse, J. D.

10.1101/530949 — zoology — Posted on 2019-06-18

1289 Resting networks and personality predict attack speed in social spiders

Hunt, E. R.; Mi, B.; Geremew, R.; Fernandez, C.; Wong, B. M.; Pruitt, J. N.; Pinter-Wollman, N.

10.1101/591453 — animal behavior and cognition — Posted on 2019-06-18

1290 FUS ALS-causative mutations impact FUS autoregulation and the processing of RNA-binding proteins through intron retention

Humphrey, J.; Birsa, N.; Milioto, C.; Robaldo, D.; Eberle, A.; Kraeuchi, R.; Bentham, M.; Jarvis, S.; Ule, A.; Bodo, C.; Garone, M. G.; Devoy, A.; Rosa, A.; Bozzoni, I.; Fisher, E.; Ruepp, M.-D.; Muehlemann, O.; Schiavo, G.; Isaacs, A.; Plagnol, V.; Fratta, P.

10.1101/567735 — neuroscience — Posted on 2019-06-18

1291 Anti-tubercular activity of novel 4-anilinoquinolines and 4-anilinoquinazolines

Asquith, C. R. M.; Fleck, N.; Torrice, C. D.; Crona, D. J.; Grundner, C.; Zuercher, W. J.

10.1101/570002 — pharmacology and toxicology — Posted on 2019-06-18

1292 Direct current stimulation boosts Hebbian plasticity in vitro

Kronberg, G.; Rahman, A.; Bikson, M.; Parra, L. C.

10.1101/562322 — neuroscience — Posted on 2019-06-18

1293 Distinct molecular etiologies of male and female hepatocellular carcinoma

Natri, H. M.; Wilson, M. A.; Buetow, K.

10.1101/507939 — genomics — Posted on 2019-06-18

1294 Accurate inference of tree topologies from multiple sequence alignments using deep learning

Suvorov, A.; Hochuli, J.; Schrider, D.

10.1101/559054 — evolutionary biology — Posted on 2019-06-18

1295 Sexual segregation in a highly pagophilic and sexually dimorphic marine predator

Barbraud, C.; Delord, K.; Kato, A.; Bustamante, P.; Cherel, Y.

10.1101/472431 — ecology — Posted on 2019-06-18

1296 Murburn concept explains the acutely lethal effect of cyanide

Manoj, K. M.; Ramasamy, S.; Parashar, A.; Soman, V.; Pakshirajan, K.

10.1101/555888 — biochemistry — Posted on 2019-06-18

1297 Integrative analysis from the epigenome through translation exposes patterns of dominant nuclear regulation during transient stress

Lee, T. A.; Bailey-Serres, J.

10.1101/479980 — plant biology — Posted on 2019-06-18

1298 AUTOMAGIC: Standardized Preprocessing of Big EEG Data

Pedroni, A.; Bahreini, A.; Langer, N.

10.1101/460469 — neuroscience — Posted on 2019-06-18

1299 Exosome labeling by lipophilic dye PKH26 results in significant increase in vesicle size

Dehghani, M.; Gulvin, S. M.; Flax, J.; Gaborski, T. R.

10.1101/532028 — biochemistry — Posted on 2019-06-18

1300 Calcium-responsive transactivator (CREST) toxicity is rescued by loss of PBP1/ATXN2 function in a novel yeast proteinopathy model and in transgenic flies

Park, S.; Park, S.-K.; Watanabe, N.; Hashimoto, T.; Iwatsubo, T.; Shelkovnikova, T. A.; Liebman, S. W.

10.1101/415927 — molecular biology — Posted on 2019-06-18

1301 Inference of complex population histories using whole-genome sequences from multiple populations

Steinrücken, M.; Kamm, J.; Spence, J. P.; Song, Y. S.

10.1101/026591 — evolutionary biology — Posted on 2019-06-18

1302 Self-assembling Manifolds in Single-cell RNA Sequencing Data

Tarashansky, A. J.; Xue, Y.; Quake, S. R.; Wang, B.

10.1101/364166 — bioinformatics — Posted on 2019-06-18

1303 Searching for rewards like a child means less generalization and more directed exploration

Schulz, E.; Wu, C. M.; Ruggeri, A.; Meder, B.

10.1101/327593 — animal behavior and cognition — Posted on 2019-06-18

1304 Nucleus Basalis Stimulation Stabilizes Attractor Networks and Enhances Task Representation in Prefrontal Cortex

Qi, X.-L.; Liu, R.; Vazdarjanova, A. I.; Blake, D. T.; Constantinidis, C.

10.1101/674465 — neuroscience — Posted on 2019-06-18

1305 Genetic dissection reveals the role of Ash1 domains in counteracting Polycomb repression

Dorafshan, E.; Kahn, T. G.; Glotov, A.; Savitsky, M.; Schwartz, Y. B.

10.1101/675173 — genetics — Posted on 2019-06-18

1306 Attraction of Triatoma infestans (Klug) to adhesive yeast-baited trap under laboratory conditions

Cardozo, M.; Fiad, F. G.; Crocco, L. B.; Gorla, D. E.

10.1101/674473 — ecology — Posted on 2019-06-18

1307 Revisiting Parameter Estimation in Biological Networks: Influence of Symmetries

Sreedharan, J.; Turowski, K.; Szpankowski, W.

10.1101/674739 — systems biology — Posted on 2019-06-18

1308 Gene expression analysis of Cyanophora paradoxa reveals conserved abiotic stress responses between basal algae and flowering plants

Ferrari, C.; Mutwil, M.

10.1101/674762 — plant biology — Posted on 2019-06-18

1309 Cervical spinal cord atrophy and Alzheimer’s disease

Lorenzi, R.; Palesi, F.; Castellazzi, G.; Vitali, P.; Anzalone, N.; Bernini, S.; Sinforiani, E.; Micieli, G.; Costa, A.; D'Angelo, E. U.; Gandini Wheeler-Kingshott, C. A. M.

10.1101/673350 — neuroscience — Posted on 2019-06-18

1310 Pyrazinamide triggers degradation of its target aspartate decarboxylase

Gopal, P.; Sarathy, J.; Yee, M.; Ragunathan, P.; Shin, J.; Bhushan, S.; Zhu, J.; Akopian, T.; Kandror, O.; Lim, T. K.; Gengenbacher, M.; Lin, Q.; Rubin, E. J.; Grueber, G.; Dick, T.

10.1101/674416 — microbiology — Posted on 2019-06-18

1311 A novel Mendelian randomization method identifies causal relationships between gene expression and low-density lipoprotein cholesterol levels.

van der Graaf, A.; Claringbould, A.; Rimbert, A.; BIOS Consortium, ; Westra, H.-J.; Li, Y.; Wijmenga, C.; Sanna, S.

10.1101/671537 — genetics — Posted on 2019-06-18

1312 Infect While the Iron is Scarce: Nutrient Explicit Phage-Bacteria Games

Muratore, D.; Weitz, J. S.

10.1101/674382 — ecology — Posted on 2019-06-18

1313 A Bayesian framework for identifying consistent patterns of microbial abundance between body sites

Meier, R.; Thompson, J. A.; Chung, M.; Zhao, N.; Kelsey, K. T.; Michaud, D. S.; Koestler, D. C.

10.1101/673277 — microbiology — Posted on 2019-06-18

1314 Mechanoreceptor-mediated circuit regulates cold tolerance in Caenorhabditis elegans

Takagaki, N.; Ohta, A.; Ohnishi, K.; Minakuchi, Y.; Toyoda, A.; Fujiwara, Y.; Kuhara, A.

10.1101/673863 — genetics — Posted on 2019-06-18

1315 Serotonin Neurons in the Dorsal and Medial Raphe Nuclei: from Single-Cell Transcriptomes to Whole-Brain Projections

Ren, J.; Isakova, A.; Friedmann, D.; Zeng, J.; Grutzner, S.; Pun, A.; Zhao, G. Q.; Kolluru, S. S.; Wang, R.; Lin, R.; Li, P.; Li, A.; Raymond, J. L.; Luo, Q.; Luo, M.; Quake, S. R.; Luo, L.

10.1101/674697 — neuroscience — Posted on 2019-06-18

1316 NONU-1 encodes a conserved endonuclease required for mRNA translation surveillance

Glover, M. L.; Burroughs, A. M.; Egelhofer, T. A.; Pule, M. N.; Aravind, L.; Arribere, J. A.

10.1101/674358 — molecular biology — Posted on 2019-06-18

1317 Interkingdom Signal Indole Inhibits Pseudomonas aeruginosa Persister Cell Waking

Zhang, W.; Yamasaki, R.; Wood, T. K.

10.1101/674978 — microbiology — Posted on 2019-06-18

1318 C. elegans transgenerationally adapts to bacterial infection by increasing the expression of cysteine synthases in progeny

Burton, N. O.; Riccio, C.; Dallaire, A.; Price, J.; Jenkins, B.; Koulman, A.; Miska, E. A.

10.1101/675132 — genetics — Posted on 2019-06-18

1319 Enhanced genome annotation strategy provides novel insights on the phylogeny of Flaviviridae

de Bernardi Schneider, A.; Jacob Machado, D.; Janies, D. A.

10.1101/674333 — evolutionary biology — Posted on 2019-06-18

1320 Bayesian inference of ancestral host-parasite interactions under a phylogenetic model of host repertoire evolution

Braga, M. P.; Landis, M. J.; Nylin, S.; Janz, N.; Ronquist, F.

10.1101/675017 — evolutionary biology — Posted on 2019-06-18

1321 Andropogon bicornis L. (Poales: Poaceae): a stink bug shelter in the soybean and corn off-season in southern Brazil

Engel, E.; Batistella Pasini, M. P.; Zamberlan, J. F.; Bortolotto, R. P.; Horn, R. C.; Camera, J. N.; Horz, D. C.

10.1101/675157 — ecology — Posted on 2019-06-18

1322 Protein function prediction in genomes: Critical assessment of coiled-coil predictions based on protein structure data

Simm, D.; Hatje, K.; Waack, S.; Kollmar, M.

10.1101/675025 — bioinformatics — Posted on 2019-06-18

1323 Altered dorsal CA1 neuronal population coding in the APP/PS1 mouse model of Alzheimer’s disease

Chockanathan, U.; Warner, E. J.; Turpin, L.; O'Banion, M. K.; Padmanabhan, K.

10.1101/674374 — neuroscience — Posted on 2019-06-18

1324 MiR-9-5p protects from kidney fibrosis by metabolic reprogramming

10.1101/667972 — molecular biology — Posted on 2019-06-18

1325 Extracellular CIRP as a Novel Endogenous TREM-1 Ligand to Fuel Inflammation

Denning, N.-L.; Aziz, M.; Murao, A.; Gurien, S. D.; Ochani, M.; Prince, J.; Wang, P.

10.1101/674218 — immunology — Posted on 2019-06-18

1326 DNA damage response clamp loader Rad24(Rad17) and Mec1(ATR) kinase have distinct functions in regulating meiotic crossovers

Shinohara, A.; Shinohara, M.; Bishop, D. K.

10.1101/674507 — genetics — Posted on 2019-06-18

1327 KCND3 is a novel susceptibility locus for early repolarization

Teumer, A.; Trenkwalder, T.; Kessler, T.; Jamshidi, Y.; van den Berg, M. E.; Kaess, B.; Nelson, C. P.; Bastiaenen, R.; De Bortoli, M.; Rossini, A.; Deisenhofer, I.; Stark, K.; Assa, S.; Braund, P. S.; Cabrera, C.; Dominiczak, A.; Gogele, M.; Hall, L. M.; Ikram, A. M.; Kavousi, M.; Lackner, K. J.; Christian, M.; Munzel, T.; Nauck, M.; Padmanabhan, S.; Pfeiffer, N.; Spector, T. D.; Uitterlinden, A. G.; Verweij, N.; Volker, U.; Warren, H. R.; Zafar, M.; Felix, S. B.; Kors, J. A.; Snieder, H.; Munroe, P. B.; Pattaro, C.; Fuchsberger, C.; Schmidt, G.; Nolte, I. M.; Schunkert, H.; Pramstaller, P.; W

10.1101/673640 — genetics — Posted on 2019-06-18

1328 Somatic aging pathways regulate reproductive plasticity resulting from early life starvation in Caenorhabditis elegans

Ow, M. C.; Nichitean, A. M.; Hall, S. E.

10.1101/673764 — genetics — Posted on 2019-06-18

1329 Mechanics of allostery: contrasting the induced fit and population shift scenarios

Ravasio, R.; Flatt, S. M.; Yan, L.; Zamuner, S.; Brito, C.; Wyart, M.

10.1101/673541 — biophysics — Posted on 2019-06-18

1330 Functions of ventral visual cortex after bilateral hippocampal loss

Kim, J. G.; Gregory, E.; Landau, B.; McCloskey, M.; Turk-Browne, N. B.; Kastner, S.

10.1101/673228 — neuroscience — Posted on 2019-06-18

1331 Influence of genetic polymorphism on transcriptional enhancer activity in the malaria vector Anopheles coluzzii

Nardini, L.; Holm, I.; Pain, A.; Bischoff, E.; Gohl, D.; Zongo, S.; Guelbeogo, W. M.; Sagnon, N.; Vernick, K. D.; Riehle, M. M.

10.1101/659144 — genetics — Posted on 2019-06-18

1332 Single Cell Profiling Reveals Sex, Lineage and Regional Diversity in the Mouse Kidney

Ransick, A.; Lindström, N. O.; Liu, J.; Qin, Z.; Guo, J.-J.; Alvarado, G. F.; Kim, A. D.; Black, H. G.; Kim, J.; McMahon, A. P.

10.1101/673335 — genetics — Posted on 2019-06-18

1333 The late blooming amphipods: global change promoted post-Jurassic ecological radiation despite Palaeozoic origin

Copilas-Ciocianu, D.; Borko, S.; Fiser, C.

10.1101/675140 — evolutionary biology — Posted on 2019-06-18

1334 Successful forecasting of harmful cyanobacteria blooms with high frequency lake data

Ingalls, B.; Kehoe, M.; Baulch, H.; Venkiteswaran, J.

10.1101/674325 — ecology — Posted on 2019-06-18

1335 The yellow gene influences Drosophila male mating success through sex comb melanization

Massey, J. H.; Chung, D.; Siwanowicz, I.; Stern, D. L.; Wittkopp, P. J.

10.1101/673756 — animal behavior and cognition — Posted on 2019-06-18

1336 PET and CSF amyloid-β status are differently predicted by patient features: Information from discordant cases

Reimand, J.; de Wilde, A.; Teunissen, C. E.; Zwan, M.; Windhorst, A. D.; Boellaard, R.; Barkhof, F.; van der Flier, W. M.; Scheltens, P.; van Berckel, B. N. M.; Ossenkoppele, R.; Bouwman, F.

10.1101/673467 — neuroscience — Posted on 2019-06-18

1337 Bayesian inference of power law distributions

Atwal, G. S.; Grigaityte, K.

10.1101/664243 — bioinformatics — Posted on 2019-06-18

1338 Kinetochore capture by spindle microtubules: why fission yeast may prefer pivoting to search-and-capture

Nayak, I.; Das, D.; Nandi, A.

10.1101/673723 — biophysics — Posted on 2019-06-18

1339 Controlled dehydration, structural flexibility, and Gadolinium MRI contrast compound binding in human plasma glycoprotein afamin

Naschberger, A.; Juyoux, P.; von Velsen, J.; Rupp, B.; Bowler, M.

10.1101/673376 — biochemistry — Posted on 2019-06-18

1340 Differential expression of cyclins mRNA in neural tissues of BoHV-1- and BoHV-5- infected cattle

marin, m.; burucua, m.; rensetti, d.; rosales, j. j.; odeon, a.; PEREZ, S.

10.1101/674002 — microbiology — Posted on 2019-06-18

1341 Loss of Y in leukocytes, dysregulation of autosomal immune genes and disease risks

Dumanski, J. P.; Halvardson, J.; Davies, H.; Rychlicka-Buniowska, E.; Mattisson, J.; Torabi Moghadam, B.; Nagy, N.; Weglarczyk, K.; Bukowska-Strakova, K.; Danielsson, M.; Olszewski, P.; Piotrowski, A.; Ambicka, A.; Przewoznik, M.; Belch, L.; Grodzicki, T.; Chlosta, P. L.; Imreh, S.; Giedraitis, V.; Lannfelt, L.; Kilander, L.; Nordlund, J.; Ameur, A.; Gyllensten, U.; Johansson, A.; Jozkowicz, A.; Siedlar, M.; Klich-Raczka, A.; Jaszczynski, J.; Enroth, S.; Baran, J.; Ingelsson, M.; Rys, J.; Forsberg, L. A.

10.1101/673459 — immunology — Posted on 2019-06-18

1342 A predicted deleterious allele of the essential meiosis gene MND1, present in ~3% of East Asians, does not disrupt reproduction in mice.

Tran, T.; Martinez, J.; Schimenti, J.

10.1101/673145 — genetics — Posted on 2019-06-18

1343 On set-based association tests: insights from a regression using summary statistics

Zhao, Y.; Sun, L.

10.1101/673103 — genetics — Posted on 2019-06-18

1344 Nature and Nurture integrated through an adjustable Flux Balance Analysis: The impact of cell-nutrition changes on the Warburg effect in hepatocellular carcinoma

Weglarz-Tomczak, E.; Mondeel, T. D. G. A.; Piebes, D. G. E.; Westerhoff, H. V.

10.1101/674150 — systems biology — Posted on 2019-06-18

1345 CRISPR-Cas immunity repressed by a biofilm-activating pathway in Pseudomonas aeruginosa

Borges, A. L.; Castro, B.; Govindarajan, S.; Solvik, T.; Escalante, V.; Bondy-Denomy, J.

10.1101/673095 — microbiology — Posted on 2019-06-18

1346 The multiple population genetic and demographic routes to islands of genomic divergence

Quilodran, C. S.; Ruegg, K.; Sendell-Price, A. T.; Anderson, E.; Coulson, T.; Clegg, S.

10.1101/673483 — genomics — Posted on 2019-06-18

1347 Nature based measures reverse catchment biodiversity loss and increase freshwater resilience in an agricultural landscape

Williams, P. J.; Biggs, J.; Stoate, C.; Szczur, J.; Brown, C.; Bonney, S.

10.1101/672915 — ecology — Posted on 2019-06-18

1348 Photodamage repair pathways contribute to the accurate maintenance of the DNA methylome landscape upon UV exposure

Graindorge, S.; Cognat, V.; Johann to Berens, P.; Mutterer, J.; Molinier, J.

10.1101/673780 — plant biology — Posted on 2019-06-18

1349 Rapid single-step affinity purification of HA-tagged mitochondria from Arabidopsis thaliana

Kuhnert, F.; Stefanski, A.; Overbeck, N.; Stuehler, K.; Weber, A. P.

10.1101/672972 — plant biology — Posted on 2019-06-18

1350 Maximizing the coding capacity of neuronal networks

Chowdhary, S.; Assisi, C.

10.1101/673632 — neuroscience — Posted on 2019-06-18

1351 Chronic Stability of Single-Channel Neurophysiological Correlates of Gross and Fine Reaching Movements in the Rat

Bundy, D.; Guggenmos, D. J.; Murphy, M. D.; Nudo, R. J.

10.1101/674101 — neuroscience — Posted on 2019-06-18

1352 Comprehensive ecosystem-specific 16S rRNA gene databases with automated taxonomy assignment (AutoTax) provide species-level resolution in microbial ecology

Dueholm, M. S.; Skytte Andersen, K. S.; Petriglieri, F.; McIlroy, S. J. J.; Nierychlo, M.; Petersen, J. F.; Kristensen, J. M.; Yashiro, E.; Karst, S. M. M.; Albertsen, M.; Nielsen, P. H.

10.1101/672873 — microbiology — Posted on 2019-06-18

1353 Improving Bionano scaffolding with BiSCoT

Istace, B.; Belser, C.; Aury, J.-M.

10.1101/674721 — bioinformatics — Posted on 2019-06-18

1354 Subject, session and task effects on power, connectivity and network centrality: a source-based EEG study

Pani, S. M.; Ciuffi, M.; Demuru, M.; Bazzano, G.; D'Aloja, E.; Fraschini, M.

10.1101/673343 — bioengineering — Posted on 2019-06-18

1355 Single-molecule localization of Nav1.5 reveals different modes of reorganization at the lateral membrane and T-tubules of cardiomyocytes

Vermij, S.; Rougier, J.-S.; Agullo-Pascual, E.; Rothenberg, E.; Delmar, M.; Abriel, H.

10.1101/674275 — physiology — Posted on 2019-06-18

1356 Practical considerations in the use of a porcine model (Sus scrofa domesticus) to assess prevention of postoperative peritubal adhesions

Crispi, C.; Crispi, C. P.; Mendes, F. L. F.; de Andrade, C. M.; Cardeman, L.; de Nadai Filho, N.; Portari, E. A.; Fonseca, M. d. F.

10.1101/675074 — pharmacology and toxicology — Posted on 2019-06-18

1357 Towards an Objective Evaluation of EEG/MEG Source Estimation Methods: The Linear Tool Kit

Hauk, O.; Stenroos, M.; Treder, M.

10.1101/672956 — neuroscience — Posted on 2019-06-18

1358 Highly Accelerated Vessel-Selective Arterial Spin Labelling Angiography using Sparsity and Smoothness Constraints

Schauman, S.; Chiew, M.; Okell, T.

10.1101/673475 — neuroscience — Posted on 2019-06-18

1359 Subcortical brain volume, regional cortical thickness and cortical surface area across attention-deficit/hyperactivity disorder (ADHD), autism spectrum disorder (ASD), and obsessive-compulsive disorder (OCD): findings from the ENIGMA-ADHD, -ASD, and -OCD working groups

Boedhoe, P. S.; van Rooij, D.; Hoogman, M.; the ENIGMA-ADHD working group, ; the ENIGMA-ASD working group, ; the ENIGMA-OCD working group, ; Thompson, P. M.; Stein, D. J.; Buitelaar, J. K.; Franke, B.; van den Heuvel, O. A.

10.1101/673012 — neuroscience — Posted on 2019-06-18

1360 A technology-agnostic long-read analysis pipeline for transcriptome discovery and quantification

Wyman, D.; Balderrama-Gutierrez, G.; Reese, F.; Jiang, S.; Rahmanian, S.; Zeng, W.; Williams, B. A.; Trout, D.; England, W.; Chu, S.; Spitale, R. C.; Tenner, A. J.; Wold, B.; Mortazavi, A.

10.1101/672931 — genomics — Posted on 2019-06-18

1361 perfectphyloR: An R package for reconstructing perfect phylogenies

Karunarathna, C. B.; Graham, J.

10.1101/674523 — genetics — Posted on 2019-06-18

1362 Coupling Wright-Fisher and coalescent dynamics for realistic simulation of population-scale datasets

Nelson, D.; Kelleher, J.; Ragsdale, A.; McVean, G.; Gravel, S.

10.1101/674440 — evolutionary biology — Posted on 2019-06-18

1363 Combining statistical and neural network approaches to derive energy functions for completely flexible protein backbone design

Huang, B.; Xu, Y.; Liu, H.

10.1101/673897 — bioinformatics — Posted on 2019-06-18

1364 LAVENDER: latent axes discovery from multiple cytometry samples with non-parametric divergence estimation and multidimensional scaling reconstruction

Nakamura, N.; Okada, D.; Setoh, K.; Kawaguchi, T.; Higasa, K.; Tabara, Y.; Matsuda, F.; Yamada, R.

10.1101/673434 — bioinformatics — Posted on 2019-06-18

1365 Exploratory Data Analysis in The Vallecas Project: A six years longitudinal study in healthy brain aging

Gomez-Ramirez, J.; Avila-Villanueva, M.; Frades Payo, B.; Valenti Soler, M.; Zea Sevilla, M. A.; del Ser Quijano, T.; Fernandez-Blazquez, M. A.

10.1101/674853 — neuroscience — Posted on 2019-06-18

1366 Physical activity, aerobic fitness and brain white matter: their role for executive functions in adolescence

Ruotsalainen, I.; Gorbach, T.; Perkola, J.; Renvall, V.; Syvaoja, H. J.; Tammelin, T. H.; Karvanen, J.; Parviainen, T.

10.1101/674846 — neuroscience — Posted on 2019-06-18

1367 FOXC1 negatively regulates BMP-SMAD activity and Id1 expression during osteoblast differentiation.

Caddy, J. C.; Louma, L. M.; Berry, F. B.

10.1101/673889 — molecular biology — Posted on 2019-06-18

1368 Robust Normalization of Luciferase Reporter Data

Repele, A.; Manu,

10.1101/673087 — molecular biology — Posted on 2019-06-18

1369 Trevolver: simulating non-reversible DNA sequence evolution in trinucleotide context on a bifurcating tree

Nelson, C. W.; Fu, Y.-X.; Li, W.-H.

10.1101/672717 — evolutionary biology — Posted on 2019-06-18

1370 JARA: ‘Just Another Red list Assessment’

Winker, H.; Sherley, R.

10.1101/672899 — ecology — Posted on 2019-06-18

1371 MetaCurator: A hidden Markov model-based toolkit for extracting and curating sequences from taxonomically-informative genetic markers

Richardson, R.; Sponsler, D.; McMinn, H.; Johnson, R.

10.1101/672782 — bioinformatics — Posted on 2019-06-18

1372 yacrd and fpa: upstream tools for long-read genome assembly

Marijon, P.; Chikhi, R.; Varre, J.-S.

10.1101/674036 — bioinformatics — Posted on 2019-06-18

1373 Worker body size but not its age influences phototaxis in a bumblebee (Bombus terrestris, L.)

Merling, M.; Eisenmann, S.; Bloch, G.

10.1101/673509 — animal behavior and cognition — Posted on 2019-06-18

1374 Classification-based Inference of Dynamical Models of Gene Regulatory Networks

Fehr, D.; Manu, ; Loh, Y. L.

10.1101/673137 — systems biology — Posted on 2019-06-18

1375 Cell volume distributions in exponentially growing populations

Bokes, P.; Singh, A.

10.1101/673442 — systems biology — Posted on 2019-06-18

1376 Paying Attention to Speech: The Role of Cognitive Capacity and Acquired Experience

Lambez, B.; Agmon, G.; Har-shai, P.; Rassovsky, Y.; Zion Golumbic, E.

10.1101/655274 — neuroscience — Posted on 2019-06-18

1377 Calretinin positive neurons form an excitatory amplifier network in the spinal cord dorsal horn

Smith, K. M.; Browne, T. J.; Davis, O.; Coyle, A.; Boyle, K. A.; Watanabe, M.; Dickinson, S. A.; Iredale, J. A.; Gradwell, M. A.; Jobling, P.; Callister, R. J.; Dayas, C. V.; Hughes, D. I.; Graham, B. A.

10.1101/673533 — neuroscience — Posted on 2019-06-18

1378 Reconstruction of in-vivo subthreshold activity of single neurons from large-scale spiking recordings

Papaioannou, S.; Marques Smith, A.; Eriksson, D.

10.1101/673046 — neuroscience — Posted on 2019-06-18

1379 Efficient and Modular CRISPR-Cas9 Vector System for Physcomitrella patens

Mallett, D. R.; Chang, M.; Cheng, X.; Bezanilla, M.

10.1101/674481 — molecular biology — Posted on 2019-06-18

1380 A large-scale comparison shows that genetic changes causing antibiotic resistance in experimentally evolved Pseudomonas aeruginosa predict those in naturally evolved bacteria

Wardell, S. J. T.; Rehman, A.; Martin, L. W.; Winstanley, C.; Patrick, W. M.; Lamont, I.

10.1101/674531 — microbiology — Posted on 2019-06-18

1381 PI4K2β constrains non-canonical Wnt-PCP signalling and is localised by PAR-1 (MARK2/3) phosphorylation

Tsang, S. M.; Cheng, W.; Green, J. B. A.; Li, J.

10.1101/660431 — developmental biology — Posted on 2019-06-18

1382 3D observation of large-scale subcellular dynamics in vivo at the millisecond scale

Wu, J.; Lu, Z.; Qiao, H.; Zhang, X.; Zhanghao, K.; Xie, H.; Yan, T.; Zhang, G.; Li, X.; Jiang, Z.; Lin, X.; Fang, L.; Zhou, B.; Fan, J.; Xi, P.; Dai, Q.

10.1101/672584 — cell biology — Posted on 2019-06-18

1383 Optogenetic Control of Programmable Genome Editing by Photoactivatable CRISPR/Cas9 Nanosystem in the Second Near-Infrared Window

Chen, X.; Chen, Y.; Xin, H.; Wan, T.; Ping, Y.

10.1101/673715 — bioengineering — Posted on 2019-06-18

1384 Working out Classic Examples of Metabolic Networks Structural Analysis with Wolfram Language

Liang, K. K.

10.1101/672881 — bioengineering — Posted on 2019-06-18

1385 Critical role for P53 in regulating the cell cycle of ground state embryonic stem cells

ter Huurne, M.; Peng, T.; Yi, G.; van Mierlo, G.; Marks, H.; Stunnenberg, H.

10.1101/674960 — molecular biology — Posted on 2019-06-18

1386 Characterizing the innate and adaptive responses of immunized mice to Bordetella pertussis infection using in vivo imaging and transcriptomic analysis

10.1101/674408 — immunology — Posted on 2019-06-18

1387 Circulating Levels of Free 25(OH)D Increase at the Onset of Rheumatoid Arthritis

Anaparti, V.; Meng, X.; Mahadevappa, H.; SMOLIK, I.; MOOKHERJEE, N.; EL-GABALAWY, H. S.

10.1101/675124 — physiology — Posted on 2019-06-18

1388 Neural, functional, and aesthetic impacts of spatially heterogeneous flicker: A potential role of natural flicker

Menceloglu, M.; Grabowecky, M.; Suzuki, S.

10.1101/675090 — neuroscience — Posted on 2019-06-18

1389 NaV1.1 and NaV1.6 selective compounds reduce the behavior phenotype in a novel zebrafish model for Dravet Syndrome

Weuring, W. J.; Singh, S.; Volkers, L.; Rook, M. B.; van 't Slot, R. H.; Bosma, M.; Inserra, M.; Vetter, I.; Verhoeven-Duif, N. M.; Braun, K. P. J.; Rivara, M.; Koeleman, B. P. C.

10.1101/675082 — genetics — Posted on 2019-06-18

1390 Comparing detectability patterns of bird species in small ponds using multi-method hierarchical modelling

Zamora Marin, J. M.; Zamora Lopez, A.; Calvo Sendin, J. F.; Oliva Paterna, F. J.

10.1101/675116 — ecology — Posted on 2019-06-18

1391 Estrogen induces mammary ductal dysplasia.

Itou, J.; Takahashi, R.; Sasanuma, H.; Tsuda, M.; Morimoto, S.; Matsumoto, Y.; Ishii, T.; Sato, F.; Takeda, S.; Toi, M.

10.1101/673525 — cancer biology — Posted on 2019-06-18

1392 Dose assessment in dental cone beam computed tomography: comparison of optically stimulated luminescence dosimetry with the Monte Carlo method

Lee, C.; Yoon, J.; Han, S.-S.; Na, J. Y.; Lee, J.-H.; Kim, Y. H.; Hwang, J. J.

10.1101/675058 — scientific communication and education — Posted on 2019-06-18

1393 Switching between bacteriostatic and bactericidal antimicrobials for retreatment of bovine respiratory disease (BRD) relapses is associated with an increased frequency of resistant pathogen isolation from veterinary diagnostic laboratory submissions

Coetzee, J.; Magstadt, D. R.; Follett, L.; Sidhu, P. K.; Schuler, A. M.; Krull, A. C.; Cooper, V. L.; Engelken, T. J.; OConnor, A. M.

10.1101/675066 — microbiology — Posted on 2019-06-18

1394 Oligomeric state of the ZIKV E protein defines protective immune responses.

Metz, S. W.; Thomas, A.; Brackbill, A.; Forsberg, J.; Miley, M. J.; Lopez, C. A.; Lazear, H. M.; Tian, S.; de Silva, A. M.

10.1101/674424 — microbiology — Posted on 2019-06-18

1395 Cluster analysis on high dimensional RNA-seq data with applications to cancer research- An evaluation study

Vidman, L.; Källberg, D.; Ryden, P.

10.1101/675041 — bioinformatics — Posted on 2019-06-18

1396 Prevalence and genotyping of Trichomonas gallinae in Riyadh, Saudi Arabia

Albeshr, M. F.; Alrefaei, A. F.

10.1101/675033 — epidemiology — Posted on 2019-06-18

1397 High Throughput Evolution of Near Infrared Serotonin Nanosensors

Jeong, S.; Yang, D.; Beyene, A. G.; Best, A.; Landry, M.

10.1101/673152 — neuroscience — Posted on 2019-06-18

1398 Do African savanna elephants (Loxodonta africana) eat crops because they crave micronutrients?

Vogel, S. M.; de Boer, W. F.; Masake, M.; Songhurst, A. C.; McCulloch, G.; Stronza, A.; Henley, M.; Coulson, T.

10.1101/673392 — ecology — Posted on 2019-06-18

1399 Bone marrow adipose tissue is a unique adipose subtype with distinct roles in systemic glucose homeostasis

Suchacki, K. J.; Tavares, A. A. S.; Mattiucci, D.; Scheller, E. L.; Papanastasiou, G.; Gray, C.; Sinton, M. C.; Ramage, L. E.; McDougald, W. A.; Lovdel, A.; Sulston, R. J.; Thomas, B. J.; Nicholson, B. M.; Drake, A. J.; Alcaide-Corral, C.; Said, D.; Poloni, A.; Cinti, S.; MacPherson, G. J.; Dweck, M. R.; Andrews, J. P. M.; Williams, M. C.; Wallace, R. J.; van Beek, E. J. R.; MacDougald, O. A.; Morton, N. M.; Stimson, R. H.; Cawthorn, W. P.

10.1101/673129 — physiology — Posted on 2019-06-18

1400 The soil microbial community alters patterns of selection on flowering time and fitness related traits in Ipomoea purpurea

Chaney, L.; Baucom, R. S.

10.1101/672691 — evolutionary biology — Posted on 2019-06-18

1401 Effects of temperature and pCO2 on the respiration, biomineralization and photophysiology of the giant clam Tridacna maxima

Brahmi, C.; Chapron, L.; Le Moullac, G.; Soyez, C.; Beliaeff, B.; Lazareth, C. E.; Gaertner-Mazouni, N.; Vidal-Dupiol, J.

10.1101/672907 — ecology — Posted on 2019-06-18

1402 Non-Genetic Reprogramming of Monocytes via Microparticle Phagocytosis for Sustained Modulation of Macrophage Phenotype

Wofford, K. L.; Singh, B.; Cullen, D. K.; Spiller, K. L.

10.1101/674598 — bioengineering — Posted on 2019-06-18

1403 Mitochondrial DNA Copy Number (mtDNA-CN) Can Influence Mortality and Cardiovascular Disease via Methylation of Nuclear DNA CpGs

10.1101/673293 — genomics — Posted on 2019-06-18

1404 Molecular subtyping improves prognostication of Stage 2 colorectal cancer

Purcell, R. V.; Schmeier, S.; Lau, Y. C.; Pearson, J. F.; Frizelle, F. A.

10.1101/674614 — cancer biology — Posted on 2019-06-18

1405 Unique Epigenetic Programming Distinguishes Regenerative Spermatogonial Stem Cells in the Developing Mouse Testis

Cheng, K.; Chen, I.-C.; Hale, B. J.; Hermann, B. P.; Geyer, C. B.; Oatley, J. M.; McCarrey, J. R.

10.1101/674457 — developmental biology — Posted on 2019-06-17

1406 Single-cell analysis of the muscle stem cell hierarchy identifies heterotypic communication signals involved in skeletal muscle regeneration

De Micheli, A. J.; Fraczek, P.; Soueid-Baumgarten, S.; Ravichandran, H.; De Vlaminck, I.; Elemento, O.; Cosgrove, B. D.

10.1101/671032 — cell biology — Posted on 2019-06-17

1407 Super-resolution imaging reveals the evolution of higher-order chromatin folding in early carcinogenesis

Xu, J.; Ma, H.; Ma, H.; Jiang, W.; Duan, M.; Zhao, S.; Gao, C.; Hahm, E.-R.; Lardo, S.; Troy, K.; Sun, M.; Pai, R.; Stolz, D.; Singh, S.; Brand, R.; Hartman, D.; Hu, J.; Hainer, S.; Liu, Y.

10.1101/672105 — cancer biology — Posted on 2019-06-17

1408 High throughput imaging identifies a spatially localized response of primary fetal pulmonary artery endothelial cells to insulin-like growth factor 1 treatment

Kim, C.; Seedorf, G. J.; Abman, S. H.; Shepherd, D. P.

10.1101/674499 — biophysics — Posted on 2019-06-17

1409 The E3 ubiquitin ligase Pib1 regulates effective gluconeogenic shutdown in S. cerevisiae.

Vengayil, V.; Laxman, S.

10.1101/673657 — biochemistry — Posted on 2019-06-17

1410 The neural basis of tadpole transport in poison frogs

Fischer, E. K.; Roland, A. B.; Moskowitz, N. A.; Tapia, E. E.; Summers, K.; Coloma, L.; O'Connell, L. A.

10.1101/630681 — animal behavior and cognition — Posted on 2019-06-17

1411 Identifying predictors of HPV-related head and neck squamous cell carcinoma progression and survival through patient-derived models

Facompre, N. D.; Rajagopalan, P.; Sahu, V.; Pearson, A. T.; Montone, K. T.; James, C. D.; Gleber-Netto, F. O.; Weinstein, G. S.; Jalaly, J.; Lin, A.; Rustgi, A. K.; Nakagawa, H.; Califano, J. A.; Pickering, C. R.; White, E. A.; Windle, B. A.; Morgan, I. M.; Cohen, R. B.; Gimotty, P. A.; Basu, D.

10.1101/652537 — cancer biology — Posted on 2019-06-17

1412 Comparison of Rosetta flexible-backbone computational protein design methods on binding interactions

Loshbaugh, A. L.; Kortemme, T.

10.1101/674291 — biophysics — Posted on 2019-06-17

1413 Iba1+ Microglia Exhibit Morphological Differences between Inferior Colliculus Sub-Regions and Their Abutments onto GAD67+ Somata Reveal Two Novel Sub-types of GABAergic Neuron

Webb, S. D.; Orton, L. D.

10.1101/606509 — neuroscience — Posted on 2019-06-17

1414 A microtubule RELION-based pipeline for cryo-EM image processing

Cook, A. D.; Manka, S. W.; Wang, S.; Moores, C.; Atherton, J.

10.1101/673566 — molecular biology — Posted on 2019-06-17

1415 Doxorubicin-Induced p53 Interferes with Mitophagy in Cardiac Fibroblasts

Mancilla, T. R.; Aune, G. J.

10.1101/674309 — cancer biology — Posted on 2019-06-17

1416 The repertoire of serous ovarian cancer non-genetic heterogeneity revealed by single-cell sequencing of normal fallopian tube epithelial cells

Hu, Z.; Artibani, M.; Alsaadi, A.; Wietek, N.; Morotti, M.; Santana Gonzalez, L.; El-Sahhar, S.; KaramiNejadRanjbar, M.; Mallett, G.; Shi, T.; Masuda, K.; Zheng, Y.; Chong, K.; Damato, S.; Dhar, S.; Garruto Campanile, R.; Soleymani majd, H.; Cerundolo, V.; Sauka-Spengler, T.; Yau, C.; Ahmed, A. A.

10.1101/672626 — cancer biology — Posted on 2019-06-17

1417 Increased O-GlcNAcylation rapidly decreases GABAAR currents in hippocampus yet depresses neuronal output

Stewart, L. T.; Abiraman, K.; Chatham, J. C.; McMahon, L. L.

10.1101/672055 — neuroscience — Posted on 2019-06-17

1418 Fragile X Mental Retardation Protein regulates R-loop formation and prevents global chromosome fragility

Chakraborty, A.; Jenjaroenpun, P.; McCulley, A.; Li, J.; El Hilali, S.; Haarer, B.; Hoffman, E. A.; Belak, A.; Thorland, A.; Hehnly, H.; Chen, C.; Kuznetsov, V.; Feng, W.

10.1101/601906 — genomics — Posted on 2019-06-17

1419 Monitoring contractility in single cardiomyocytes and whole hearts with bio-integrated microlasers

Schubert, M.; Woolfson, L.; Barnard, I. R.; Morton, A.; Casement, B.; Robertson, G. B.; Miles, G. B.; Pitt, S. J.; Tucker, C. S.; Gather, M. C.

10.1101/605444 — biophysics — Posted on 2019-06-17

1420 Genotype-free demultiplexing of pooled single-cell RNA-Seq

Xu, J.; Falconer, C.; Nguyen, Q.; Crawford, J.; McKinnon, B. D.; Mortlock, S.-A.; Senabouth, A.; Andersen, S.; Montgomery, G. W.; Powell, J.; Coin, L.

10.1101/570614 — bioinformatics — Posted on 2019-06-17

1421 Easy Kinetics: a software that simplify enzymes kinetics characterization

Morabito, G.

10.1101/674051 — biochemistry — Posted on 2019-06-17

1422 The Avocado Genome Informs Deep Angiosperm Phylogeny, Highlights Introgressive Hybridization, and Reveals Pathogen Influenced Gene Space Adaptation

10.1101/654285 — genomics — Posted on 2019-06-17

1423 JARID2 facilitates transcriptional reprogramming in glioblastoma in response to standard treatment

Rippaus, N.; F-Bruns, A.; Tanner, G.; Taylor, C.; Droop, A.; Bruning-Richardson, A.; Care, M. A.; Wilkinson, J.; Jenkinson, M. D.; Brodbelt, A.; Chakrabarty, A.; Ismail, A.; Short, S. C.; Stead, L. F.

10.1101/649400 — cancer biology — Posted on 2019-06-17

1424 A way around the exploration-exploitation dilemma

Peterson, E. J.; Verstynen, T. V.

10.1101/671362 — animal behavior and cognition — Posted on 2019-06-17

1425 DNA Punch Cards: Encoding Data on Native DNA Sequences via Topological Modifications

Tabatabaei, S. K.; Wang, B.; Athreya, N. B. M.; Enghiad, B.; Hernandez, A. G.; Leburton, J.-P.; Soloveichik, D.; Zhao, H.; Milenkovic, O.

10.1101/672394 — synthetic biology — Posted on 2019-06-17

1426 Approximate Bayesian Inference for a Mechanistic Model of Vesicle Release at a Ribbon Synapse

Schroeder, C.; James, B.; Lagnado, L.; Berens, P.

10.1101/669218 — neuroscience — Posted on 2019-06-17

1427 Revisiting the Fisher-KPP equation to interpret the spreading-extinction dichotomy

El-Hachem, M.; McCue, S.; Jin, W.; Du, Y.; Simpson, M. J.

10.1101/673202 — biophysics — Posted on 2019-06-17

1428 Accurate denoising of single-cell RNA-Seq data using unbiased principal component analysis

Wagner, F.; Barkley, D.; Yanai, I.

10.1101/655365 — bioinformatics — Posted on 2019-06-17

1429 FUS ALS-causative mutations impact FUS autoregulation and the processing of RNA-binding proteins through intron retention

Humphrey, J.; Birsa, N.; Milioto, C.; Robaldo, D.; Bentham, M.; Jarvis, S.; Bodo, C.; Garone, M. G.; Devoy, A.; Rosa, A.; Bozzoni, I.; Fisher, E.; Ruepp, M.-D.; Schiavo, G.; Isaacs, A.; Plagnol, V.; Fratta, P.

10.1101/567735 — neuroscience — Posted on 2019-06-17

1430 Permissive Fatty Acid Incorporation in Host Environments Promotes Staphylococcal Adaptation to FASII Antibiotics

Kenanian, G.; Morvan, C.; Weckel, A.; Pathania, A.; Anba-Mondoloni, J.; Halpern, D.; Solgadi, A.; Dupont, L.; Henry, C.; Poyart, C.; Fouet, A.; Lamberet, G.; Gloux, K.; Gruss, A.

10.1101/635698 — microbiology — Posted on 2019-06-17

1431 Sympatric and allopatric differentiation delineates population structure in free-living terrestrial bacteria

Chase, A. B.; Arevalo, P.; Brodie, E. L.; Polz, M. F.; Karaoz, U.; Martiny, J. B. H.

10.1101/644468 — microbiology — Posted on 2019-06-17

1432 Validation of a novel milk progesterone-based tool to monitor luteolysis in dairy cows. Timing of the alerts and robustness against missing values

Adriaens, I.; Martin, O.; Saeys, W.; De Ketelaere, B.; Friggens, N. C.; Aernouts, B.

10.1101/526095 — bioengineering — Posted on 2019-06-17

1433 The VTA modulates a frequency-specific gain of thalamocortical inputs in infragranular layers of the gerbil auditory cortex

Brunk, M. G. K.; Deane, K. E.; Kisse, M.; Deliano, M.; Ohl, F. W.; Lippert, M. T.; Happel, M. F. K.

10.1101/669168 — neuroscience — Posted on 2019-06-17

1434 Enhanced cell-cell contact stability upon Fibroblast Growth factor Receptor/N-cadherin cross-talk

Nguyen, T.; Duchesne, L.; Narayama sankara, G. H.; Boggetto, N.; Fernig, D.; Murade, C. U.; Ladoux, B.; Mege, R.-M.

10.1101/465930 — cell biology — Posted on 2019-06-17

1435 Interleukin-12 elicits a non-canonical response in B16 melanoma cells to enhance survival

Byrne-Hoffman, C.; Deng, W.; McGrath, O.; Wang, P.; Rojanasakul, Y.; Klinke, D. J.

10.1101/608828 — cancer biology — Posted on 2019-06-17

1436 G4-iM Grinder: When size and frequency matter. G-Quadruplex, i-Motif and higher order structure search and analysis tool

Belmonte Reche, E.; Morales, J. C.

10.1101/532382 — bioinformatics — Posted on 2019-06-17

1437 Crossover interference and sex-specific genetic maps shape identical by descent sharing in close relatives

Caballero, M.; Seidman, D. N.; Sannerud, J.; Dyer, T. D.; Lehman, D. M.; Curran, J. E.; Duggirala, R.; Blangero, J.; Carmi, S.; Williams, A. L.

10.1101/527655 — genetics — Posted on 2019-06-17

1438 Operating Characteristics of the Rank-Based Inverse Normal Transformation for Quantitative Trait Analysis in Genome-Wide Association Studies

McCaw, Z. R.; Lane, J. M.; Saxena, R.; Redline, S.; Lin, X.

10.1101/635706 — genetics — Posted on 2019-06-17

1439 Quantifying murine placental extracellular vesiclesacross gestation and in preterm birth data withtidyNano: A computational framework for analyzingand visualizing nanoparticle data in R

Nguyen, S. L.; Greenberg, J. W.; Wang, H.; Collaer, B. W.; Wang, J.; Petroff, M. G.

10.1101/503292 — cell biology — Posted on 2019-06-17

1440 Coolpup.py - a versatile tool to perform pile-up analysis of Hi-C data

Flyamer, I. M.; Illingworth, R. S.; Bickmore, W. A.

10.1101/586537 — bioinformatics — Posted on 2019-06-17

1441 Repurposing antihypertensive drugs for the prevention of Alzheimer’s disease: a Mendelian Randomization study

Walker, V. M.; Kehoe, P. G.; Martin, R. M.; Davies, N. M.

10.1101/486878 — genetics — Posted on 2019-06-17

1442 Testosterone mediates status-specific patterns of cooperation in a social network

Ryder, T. B.; Dakin, R.; Vernasco, B. J.; Evans, B. S.; Horton, B. M.; Moore, I. T.

10.1101/453548 — animal behavior and cognition — Posted on 2019-06-17

1443 Unraveling intra- and intersegmental neuronal connectivity between central pattern generating networks in a multi-legged locomotor system

Daun, S.; Mantziaris, C.; Toth, T.; Bueschges, A.; Rosjat, N.

10.1101/453423 — neuroscience — Posted on 2019-06-17

1444 Phasic arousal suppresses suboptimal decision biases in mice and humans

de Gee, J. W.; Tsetsos, K.; Schwabe, L.; Urai, A. E.; McCormick, D. A.; McGinley, M. J.; Donner, T. H.

10.1101/447656 — neuroscience — Posted on 2019-06-17

1445 Connexin 43 impacts the chick premigratory cranial neural crest cell population without affecting the neural crest cell epithelial-to-mesenchymal transition

Jourdeuil, K.; Taneyhill, L.

10.1101/673921 — developmental biology — Posted on 2019-06-17

1446 Receptor-specific interactome as a hub for rapid cue-induced selective translation in axons

Koppers, M.; Cagnetta, R.; Shigeoka, T.; Wunderlich, L. C. S.; Zhao, S.; Minett, M. S.; Bellon, A.; Kaminski, C. F.; Flanagan, J.; Holt, C. E.

10.1101/673798 — developmental biology — Posted on 2019-06-17

1447 Ste5 Membrane Localization Allows MAPK Pathway Signaling in trans Between Kinases on Separate Scaffold Molecules

Lamson, R. E.; Winters, M. J.; Pryciak, P. M.

10.1101/673855 — cell biology — Posted on 2019-06-17

1448 Distinct neural mechanisms and temporal constraints govern a cascade of audiotactile interactions

Zumer, J. M.; White, T. P.; Noppeney, U.

10.1101/446112 — neuroscience — Posted on 2019-06-17

1449 Plasmodium condensin core subunits (SMC2/SMC4) mediate atypical mitosis and are essential for parasite proliferation and transmission

Pandey, R.; Abel, S.; Boucher, M.; Wall, R. J.; Zeeshan, M.; Rea, E.; Freville, A.; Lu, X. M.; Brady, D.; Daniel, E.; Stanway, R. R.; Wheatley, S.; Batugedara, G.; Hollin, T.; Bottrill, A. R.; Gupta, D.; Holder, A. A.; Le Roch, K. G.; Tewari, R.

10.1101/674028 — cell biology — Posted on 2019-06-17

1450 Vimentin intermediate filaments undergo irreversible conformational changes during cyclic loading

Forsting, J.; Kraxner, J.; Witt, H.; Janshoff, A.; Koester, S.

10.1101/673673 — biophysics — Posted on 2019-06-17

1451 Comparative molecular life history of spontaneous canine and human gliomas

Amin, S. B.; Anderson, K. J.; Boudreau, C. E.; Martinez-Ledesma, E.; Kocavakuk, E.; Johnson, K. C.; Barthel, F. P.; Varn, F. S.; Kassab, C.; Ling, X.; Kim, H.; Barter, M.; Ngan, C. Y.; Chapman, M.; Koehler, J. W.; Miller, A. D.; Miller, C. R.; Porter, B. F.; Rissi, D. R.; Mazcko, C.; LeBlanc, A. K.; Dickinson, P. J.; Packer, R.; Taylor, A. R.; Rossmeisl, J. H.; Heimberger, A. B.; Levine, J. M.; Verhaak, R. G.

10.1101/673822 — cancer biology — Posted on 2019-06-17

1452 Vectashield-induced fluorescence quenching hinders conventional and super resolution microscopy

Arsic, A.; Stajkovic, N.; Spiegel, R.; Nikic-Spiegel, I.

10.1101/393264 — biophysics — Posted on 2019-06-17

1453 NanoVar: Accurate Characterization of Patients’ Genomic Structural Variants Using Low-Depth Nanopore Sequencing

Tham, C. Y.; Tirado-Magallanes, R.; Goh, Y.; Fullwood, M. J.; Koh, B. T. H.; Wang, W.; Ng, C. H.; Chng, W. J.; Thiery, A.; Tenen, D. G.; Benoukraf, T.

10.1101/662940 — bioinformatics — Posted on 2019-06-17

1454 cellHarmony: Cell-level matching and holistic comparison of single-cell transcriptomes

DePasquale, E. A.; Dexheimer, P.; Schnell, D.; Ferchen, K.; Hay, S.; Valiente-AlandI, I.; Blaxall, B.; Grimes, H. L.; Salomonis, N.

10.1101/412080 — bioinformatics — Posted on 2019-06-17

1455 Deforming the metric of cognitive maps distorts memory

Bellmund, J. L. S.; de Cothi, W.; Ruiter, T. A.; Nau, M.; Barry, C.; Doeller, C. F.

10.1101/391201 — neuroscience — Posted on 2019-06-17

1456 High-throughput multiplexed tandem repeat genotyping using targeted long-read sequencing

Ganesamoorthy, D.; Yan, M.; Murigneux, V.; Zhou, C.; Cao, M. D. D.; Duarte, T. P.; Coin, L. J.

10.1101/673251 — genomics — Posted on 2019-06-17

1457 Dual process coding of recalled location in human oscillatory brain activity

MacLean, M. H.; Bullock, T.; Giesbrecht, B.

10.1101/361774 — neuroscience — Posted on 2019-06-17

1458 Comparative genomics and phylogeny of sequenced IncHI plasmids

Alvarez, S.

10.1101/334409 — microbiology — Posted on 2019-06-17

1459 Regulation of Ascorbic acid by gonadotropins in rat Ovary

Hussain, S. s.; Arora, T.; Chaturvedi, M. M.; Modak, S. B.; Chaudhary, R.; Muralidhar, K.

10.1101/665752 — zoology — Posted on 2019-06-17

1460 flexiMAP: A regression-based method for discovering differential alternative polyadenylation events in standard RNA-seq data

Szkop, K. J.; Moss, D. S.; Nobeli, I.

10.1101/672766 — bioinformatics — Posted on 2019-06-17

1461 Neuron-Glial Antigen 2 (NG2)-based Glial Induction ofHuman BMSCs: A fast & safe glial progenitor cell-based therapy for congenital myelin disorders of the central nervous system

Lam, G.; Shea, G. K.-H.; Wu, K. L. K.; Li, M. T.-S.; Kwok, C. H.; Wong, C. Y.; Tsui, A. Y. P.; Shum, D. K. Y.; Chan, Y. S.

10.1101/658997 — neuroscience — Posted on 2019-06-17

1462 Demographic history of a remote ichthyofauna assemblage reveals common processes driving colonization and persistence in endemic coral reef fishes

DELRIEU-TROTTIN, E.; Hubert, N.; Giles, E. C.; Chifflet-Belle, P.; Suwalski, A.; Neglia, V.; Rapu-Edmunds, C.; Mona, S.; Saenz-Agudelo, P.

10.1101/672774 — genomics — Posted on 2019-06-17

1463 CRISPR-assisted targeted enrichment-sequencing (CATE-seq)

Xu, X.; Xia, Q.; Zhang, S.; Gao, J.; Dai, W.; Wu, J.; Wang, J.

10.1101/672816 — cancer biology — Posted on 2019-06-17

1464 Exhaustive identification of conserved upstream open reading frames with potential translational regulatory functions from animal genomes

Takahashi, H.; Miyaki, S.; Onouchi, H.; Motomura, T.; Idesako, N.; Takahashi, A.; Fukuyoshi, S.; Endo, T.; Satou, K.; Naito, S.; Itoh, M.

10.1101/672840 — bioinformatics — Posted on 2019-06-17

1465 Characterizing the sequence and prior chromatin determinants of induced TF binding with bimodal neural networks

Srivastava, D.; Aydin, B.; Mazzoni, E. O.; Mahony, S.

10.1101/672790 — bioinformatics — Posted on 2019-06-17

1466 Mass Spectrometry based Metabolomics Deciphered Metabolic Reprogramming That Was Required for Biofilm formation in Uropathogenic Escherichia coli

Lu, H.; Que, Y.; Wu, X.; Guan, T.; Guo, H.

10.1101/672592 — microbiology — Posted on 2019-06-17

1467 Designing ecologically-optimised vaccines using population genomics

Colijn, C.; Corander, J.; Croucher, N.

10.1101/672733 — evolutionary biology — Posted on 2019-06-17

1468 Effect of calcium intake and dietary cation anion difference in early lactation on bone mobilization dynamics all over lactation in dairy cows

Gaignon, P.; Le Grand, K.; Laza-Knoer, A.-L.; Hurtaud, C.; Boudon, A.

10.1101/674184 — physiology — Posted on 2019-06-17

1469 Cell elimination strategies upon identity switch via modulation of apterous in Drosophila wing disc

Klipa, O.; Hamaratoglu, F.

10.1101/674168 — developmental biology — Posted on 2019-06-17

1470 Personality may influence behavioral response to cannabis

Kardash, T.; Rodin, D.; Kirby, M.; Koman, I.; Michaelevski, I.; Pinhasov, A.

10.1101/674044 — animal behavior and cognition — Posted on 2019-06-17

1471 Larval mannitol diets increase mortality, prolong development, and decrease adult body sizes in fruit flies (Drosophila melanogaster).

Barrett, M.; Fiocca, K.; Waddell, E. A.; McNair, C.; O'Donnell, S.; Marenda, D. R.

10.1101/674192 — zoology — Posted on 2019-06-17

1472 The succession pattern of bacterial diversity in compost using pig manure mixed with wood chips analyzed by 16S rRNA gene analysis

Wang, Z.; Li, Z.; Yang, Y.; Xia, Y.; Wu, T.; Zhu, J.; Yang, J.

10.1101/674069 — microbiology — Posted on 2019-06-17

1473 Identification and characterization of novel filament-forming proteins in cyanobacteria

Springstein, B. L.; Woehle, C.; Weissenbach, J.; Helbig, A. O.; Dagan, T.; Stucken, K.

10.1101/674176 — microbiology — Posted on 2019-06-17

1474 Epidemiological consequences of enduring strain-specific immunity requiring repeated episodes of infection

Chisholm, R. H.; Sonenberg, N.; Lacey, J. A.; McDonald, M. I.; Pandey, M.; Davies, M. R.; Tong, S. Y. C.; McVernon, J.; Geard, N.

10.1101/674135 — epidemiology — Posted on 2019-06-17

1475 Slug/Snail2 is involved in the repression of proliferation genes by TGF-β in bronchial epithelial progenitor cells and is deregulated in abnormal epithelium

Ben Brahim, C.; Courageux, C.; Jolly, A.; Ouine, B.; Cartier, A.; de la Grange, P.; de Koning, L.; Leroy, P.

10.1101/674127 — cell biology — Posted on 2019-06-17

1476 Facilitators and Barriers to Linkage to HIV Care and Treatment among Female Sex Workers in a Community-based HIV Prevention Intervention in Tanzania: a qualitative study

Nyato, D. J.; Nnko, S.; Komba, A.; Kuringe, E.; Plotkin, M.; Mbita, G.; Shao, A.; Changalucha, J.; Wambura, M.

10.1101/674077 — epidemiology — Posted on 2019-06-17

1477 Can Cynodon dactylon be used to suppress invasive weeds? The effects of density-dependent on the growth and development of Tagetes minuta and Gutenbergia cordifolia

Ngondya, I.; Treydte, A. C.; Ndakidemi, P. A.; Munishi, L. C.

10.1101/674085 — ecology — Posted on 2019-06-17

1478 Easy Kinetics: a software that simplify enzymes kinetics characterization

Morabito, G.

10.1101/674051 — biochemistry — Posted on 2019-06-17

1479 Length-weight relationships for 17 fish species in the Luanhe River Estuary, Bohai Sea, northern China

Xu, m.; Xiao-Jing, S.; Yun-Ling, Z.

10.1101/674010 — zoology — Posted on 2019-06-17

1480 Factors associated with the use of maternal health services by mothers in a post-conflict area of western Côte d’Ivoire in 2016

SANGARE, A. D.; SAMBA, M.; Attia-Konan, A. R.; YOUAN, G. J.; KOUADIO, L. P.; BAKAYOKO-LY, R.

10.1101/673970 — epidemiology — Posted on 2019-06-17

1481 A survey of biosecurity measures applied on dairy cattle farms in Spain

Vilaamil, J.; Arnaiz, I.; Allepuz, A.; Molins, M.; Lazaro, M.; Benavides, B.; Moya, S. J.; Casal, J.; Yus, E.; Dieguez, F. J.

10.1101/673996 — epidemiology — Posted on 2019-06-17

1482 Characterization of the virome of shallots affected by the shallot mild yellow stripe disease in France

Marais, A.; Faure, C.; Sebastien, T.; Candresse, T.

10.1101/673962 — plant biology — Posted on 2019-06-17

1483 DNA shape complements sequence-based representations of transcription factor binding sites

DeFord, P. M.; Taylor, J.

10.1101/666735 — bioinformatics — Posted on 2019-06-17

1484 Quasi-Mendelian Paternal Inheritance of mitochondrial DNA: A notorious artifact, or anticipated mtDNA behavior?

Annis, S.; Fleischmann, Z.; Khrapko, M.; Franco, M.; Woods, D.; Kunz, W.; Ellis, P. J.; Khrapko, K.

10.1101/660670 — genetics — Posted on 2019-06-17

1485 SMNN: Batch Effect Correction for Single-cell RNA-seq data via Supervised Mutual Nearest Neighbor Detection

Yang, Y.; Li, G.; Qian, H.; Wilhelmsen, K.; Shen, Y.; Li, Y.

10.1101/672261 — bioinformatics — Posted on 2019-06-17

1486 Transposon mediated horizontal transfer of the host-specific virulence protein ToxA between three fungal wheat pathogens

McDonald, M. C.; Taranto, A. P.; Hill, E.; Schwessinger, B.; Liu, Z.; Simpfendorfer, S.; Milgate, A.; Solomon, P.

10.1101/671446 — genomics — Posted on 2019-06-17

1487 Modular and efficient pre-processing of single-cell RNA-seq

Melsted, P.; Booeshaghi, A. S.; Gao, F.; da Veiga Beltrame, E.; Lu, L.; Hjorleifsson, K. E.; Gehring, J.; Pachter, L.

10.1101/673285 — bioinformatics — Posted on 2019-06-17

1488 Putting RFMix and ADMIXTURE to the test in a complex admixed population

Uren, C.; Hoal, E. G.; Möller, M.

10.1101/671727 — genomics — Posted on 2019-06-17

1489 Horizontal transfer and gene loss shaped the evolution of alpha-amylases in bilaterians

Desiderato, A.; Barbeitos, M.; Gilbert, C.; Da Lage, J.-L.

10.1101/670273 — evolutionary biology — Posted on 2019-06-17

1490 A framework for the development of a global standardised marine taxon reference image database (SMarTaR-ID) to support image-based analyses

Howell, K. L.; Davies, J. S.; Allcock, A. L.; Braga-Henriques, A.; Buhl-Mortensen, P.; Carreiro-Silva, M.; Dominguez-Carrio, C.; Durden, J. M.; Foster, N. L.; Game, C. A.; Hitchin, B.; Horton, T.; Hosking, B.; Jones, D. O.; Mah, C.; Laguionie Marchais, C.; Menot, L.; Morato, T.; Pearman, T. R.; Piechaud, N.; Ross, R. E.; Ruhl, H. A.; Saeedi, H.; Stefanoudis, P. V.; Taranto, G. H.; Thompson, M. B.; Taylor, J. R.; Tyler, P.; Vad, J.; Victorero, L.; Vieira, R. P.; Woodall, L. C.; Xavier, J. R.; Wagner, D.

10.1101/670786 — ecology — Posted on 2019-06-17

1491 Regulation of perineuronal nets in the adult cortex by the electrical activity of parvalbumin interneurons

Devienne, G.; Picaud, S.; Cohen, I.; Piquet, J.; Tricoire, L.; Testa, D.; Di Nardo, A. A.; Rossier, J.; Cauli, B.; Lambolez, B.

10.1101/671719 — neuroscience — Posted on 2019-06-17

1492 Construction of simplified microbial consortia to degrade recalcitrant materials based on enrichment and dilution-to-extinction cultures

Kang, D.; Jacquiod, S.; Herschend, J.; Wei, S.; Nesme, J.; Sorensen, S. J.

10.1101/670133 — microbiology — Posted on 2019-06-17

1493 Comprehensive characterisation of molecular host-pathogen interactions in influenza A virus-infected human macrophages

Clohisey, S.; Parkinson, N.; Wang, B.; Bertin, N.; Wise, H.; Tomoiu, A.; Summers, K.; Carninci, P.; Forrest, A.; Hayashizaki, Y.; Digard, P.; Hume, D.; Baillie, J. K.; FANTOM 5 Consortium,

10.1101/670919 — immunology — Posted on 2019-06-17

1494 Bisphenol A promotes stress granule assembly and modulates the integrated stress response

Fay, M. M.; Columbo, D.; Cotter, C.; Friend, C.; Henry, S. M.; Hoppe, M.; Karabelas, P.; Lamy, C.; Lawell, M.; Monteith, S.; Noyes, C.; Salerno, P.; Wu, J.; Zhang, H. M.; Anderson, P. J.; Kedersha, N.; Ivanov, P.; Farny, N. G.

10.1101/673194 — cell biology — Posted on 2019-06-17

1495 SS-31 Reverses Mitochondrial Fragmentation in Fibroblasts from Patients with DCMA, a Mitochondrial Cardiomyopathy

Machiraju, P.; Wang, X.; Sabouny, R.; Huang, J.; Zhao, T.; Iqbal, F.; King, M.; Prasher, D.; Lodha, A.; Ravandi, A.; Argiropoulos, B.; Sinasac, D.; Khan, A.; Shutt, T.; Greenway, S. C.

10.1101/672857 — cell biology — Posted on 2019-06-17

1496 Untargeted metabolite analysis of Ocimum leaves shows species specific variations

Shree, M.; Nanda, R.; Masakapalli, S. K.

10.1101/673269 — biochemistry — Posted on 2019-06-17

1497 How to build a fast and highly sensitive sound detector that remains robust to temperature shifts

Chen, M.; von Gersdorff, H.

10.1101/673186 — neuroscience — Posted on 2019-06-16

1498 TWIST1 homo- and heterodimers orchestrate specificity control in embryonic stem cell lineage differentiation and craniofacial development

Fan, X.; Waardenberg, A. J.; Demuth, M.; Osteil, P.; Sun, J.; Loebel, D. A. F.; Graham, M.; Tam, P. P. L.; Fossat, N.

10.1101/672824 — developmental biology — Posted on 2019-06-16

1499 Cell cycle oscillators underlying orderly proteolysis of E2F8

Wasserman, D.; Nachum, S.; Cohen, M.; Enrico, T. P.; Noach-Hirsh, M.; Parasol, J.; Zomer-Polak, S.; Auerbach, N.; Sheinberger-Chorni, E.; Nevenzal, H.; Levi-Dadon, N.; Wang, X.; Lahmi, R.; Michaely, E.; Gerber, D.; Emanuele, M. J.; Tzur, A.

10.1101/672964 — cell biology — Posted on 2019-06-16

1500 Revisiting the Fisher-KPP equation to interpret the spreading-extinction dichotomy

El-Hachem, M.; McCue, S.; Jin, W.; Du, Y.; Simpson, M. J.

10.1101/673202 — biophysics — Posted on 2019-06-16

1501 Quantification of multicellular colonization in tumor metastasis using exome sequencing data

Nishino, J.; Watanabe, S.; Miya, F.; Kamatani, T.; Boroevich, K.; Tsunoda, T.

10.1101/542324 — cancer biology — Posted on 2019-06-16

1502 DeepKinZero: Zero-Shot Learning for Predicting Kinase-Phosphosite Associations Involving Understudied Kinases

Deznabi, I.; Arabaci, B.; Koyuturk, M.; Tastan, O.

10.1101/670638 — bioinformatics — Posted on 2019-06-16

1503 The Kaufman oculocerebrofacial syndrome protein Ube3b regulates synapse number by ubiquitinating Ppp3cc.

Ambrozkiewicz, M. C.; Ripamonti, S.; Borisova, E.; Schwark, M.; Schaub, T.; Altas, B.; Yilmaz, R.; Piepkorn, L.; Horan, S.; Jahn, O.; Dere, E.; Rosario, M.; Borck, G.; Ehrenreich, H.; Willig, K.; Rhee, J.; Tarabykin, V.; Kawabe, H.

10.1101/672923 — neuroscience — Posted on 2019-06-16

1504 A yeast optogenetic toolkit (yOTK) for gene expression control in Saccharomyces cerevisiae

An-adirekkun, J.; Stewart, C. J.; Geller, S. H.; Patel, M. T.; Melendez, J.; Oakes, B. L.; Noyes, M. B.; McClean, M.

10.1101/663393 — synthetic biology — Posted on 2019-06-16

1505 Discovery of tumoricidal DNA oligonucleotides by effect-directed in-vitro evolution

Mamet, N.; Amir, Y.; Lavi, E.; Bassali, L.; Harari, G.; Rusinek, I.; Skalka, N.; Debby, E.; Greenberg, M.; Zamir, A.; Paz, A.; Reiss, N.; Loewenthal, G.; Avivi, I.; Shimoni, A.; Neev, G.; Abu-Horowitz, A.; Bachelet, I.

10.1101/629105 — synthetic biology — Posted on 2019-06-16

1506 Ab-initio discovery of tumoricidal oligonucleotides in a DNA sequencing machine

Mamet, N.; Rusinek, I.; Harari, G.; Shapira, Z.; Zamir, A.; Borovsky, N.; Joseph, N.; Motin, M.; Saban, D.; Bachelet, I.

10.1101/630830 — synthetic biology — Posted on 2019-06-16

1507 Arabidopsis Proteome and the Mass Spectral Assay Library

Zhang, H.; Liu, P.; Guo, T.; Zhao, H.; Bensaddek, D.; Aebersold, R.; Xiong, L.

10.1101/665547 — plant biology — Posted on 2019-06-16

1508 Women with isolated fasting hyperglycemia in pregnancy are at a higher genetic risk for type 2 diabetes

Hughes, A. E.; Hayes, M. G.; Egan, A. M.; Patel, K. A.; Scholtens, D. M.; Lowe, L. P.; Lowe, W. L.; Dunne, F. P.; Hattersley, A. T.; Freathy, R. M.

10.1101/671057 — genetics — Posted on 2019-06-16

1509 Canonical Wnt pathway controls mESCs self-renewal through inhibition of spontaneous differentiation via β-catenin/TCF/LEF functions

Aulicino, F.; Sottile, F.; Pedone, E.; Lluis, F.; Marucci, L.; Cosma, M. P.

10.1101/661777 — cell biology — Posted on 2019-06-16

1510 Real-time integration of cell death mechanisms and proliferation kinetics at the single-cell and population-level using high-throughput live-cell imaging.

Gelles, J. D.; Mohammed, J. N.; Santos, L. C.; Legarda, D.; Ting, A. T.; Chipuk, J. E.

10.1101/596239 — cell biology — Posted on 2019-06-16

1511 Unscrambling Fluorophore Blinking for Comprehensive Cluster Detection via Photoactivated Localization Microscopy

Rossboth, B. K.; Platzer, R.; Sevcsik, E.; Baumgart, F.; Stockinger, H.; Schuetz, G. J.; Huppa, J. B.; Brameshuber, M.

10.1101/545152 — biophysics — Posted on 2019-06-16

1512 Intrinsically disordered nuclear pore proteins show ideal-polymer morphologies and dynamics

Davis, L. K.; Ford, I. J.; Saric, A.; Hoogenboom, B.

10.1101/571687 — biophysics — Posted on 2019-06-16

1513 Phenome-wide search for pleiotropic loci highlights key genes and molecular pathways for human complex traits

Shikov, A. E.; Predeus, A. V.; Barbitoff, Y. A.

10.1101/672758 — genetics — Posted on 2019-06-16

1514 Rise in mortality involving poisoning by medicaments other than narcotics, including poisoning by psychotropic drugs in different age/racial groups in the US

Goldstein, E.

10.1101/509729 — epidemiology — Posted on 2019-06-16

1515 SPIKEPIPE: A metagenomic pipeline for the accurate quantification of eukaryotic species occurrences and intraspecific abundance change using DNA barcodes or mitogenomes

Ji, Y.; Huotari, T.; Roslin, T.; Martin-Schmidt, N.; Wang, J.; Yu, D.; Ovaskainen, O.

10.1101/533737 — ecology — Posted on 2019-06-16

1516 ModEx: A text mining system for extracting mode of regulation of Transcription Factor-gene regulatory interaction

Farahmand, S.; Riley, T.; Zarringhalam, K.

10.1101/672725 — bioinformatics — Posted on 2019-06-15

1517 Appropriate Correction for Multiple Comparisons in Decoding of ERP Data: A Re-Analysis of Bae & Luck (2018)

Bae, G.-Y.; Luck, S. J.

10.1101/672741 — neuroscience — Posted on 2019-06-15

1518 Single-Cell Transcriptomic Analysis of mIHC Images via Antigen Mapping

Govek, K. W.; Troisi, E. C.; Woodhouse, S.; Camara, P. G.

10.1101/672501 — bioinformatics — Posted on 2019-06-15

1519 Quantitatively Partitioning Microbial Genomic Traits among Taxonomic Ranks across the Microbial Tree of Life

Royalty, T. M.; Steen, A. D.

10.1101/520973 — microbiology — Posted on 2019-06-15

1520 Using genetic path analysis to control for pleiotropy in a Mendelian randomization study

Mann, F. D.; Shabalin, A. A.; Docherty, A. D.; Krueger, R. F.

10.1101/650192 — genetics — Posted on 2019-06-15

1521 Chromosome level draft genomes of the fall armyworm, Spodoptera frugiperda (Lepidoptera: Noctuidae), an alien invasive pest in China

Liu, H.; Lan, T.; Fang, D.; Gui, F.; Wang, H.; Guo, W.; Cheng, X.; Chang, Y.; He, S.; Lyu, L.; Sahu, S. K.; Cheng, L.; Li, H.; Liu, P.; Fan, G.; Liu, T.; Hao, R.; Lu, H.; Chen, B.; Zhu, S.; Huang, F.; Dong, W.; Dong, Y.; Lu, Z.; Kang, L.; Yang, H.; Sheng, J.; Zhu, Y.; Liu, X.

10.1101/671560 — genomics — Posted on 2019-06-15

1522 The Effects of Quantitative Trait Architecture on Detection Power in Artificial Selection Experiments

Lou, R. N.; Therkildsen, N. O.; Messer, P. W.

10.1101/672683 — evolutionary biology — Posted on 2019-06-15

1523 Gene modules associated with human diseases revealed by network analysis

Ma, S.; Gong, J.; Zuo, W.; Geng, H.; Zhang, Y.; Wang, M.; Han, E.; Peng, J.; Wang, Y.; Wang, Y.; Chen, Y.

10.1101/598151 — systems biology — Posted on 2019-06-15

1524 Neural patterns reveal single-trial information on absolute pitch and relative pitch perception

Leipold, S.; Greber, M.; Sele, S.; Jaencke, L.

10.1101/672675 — neuroscience — Posted on 2019-06-15

1525 Inherited duplications of PPP2R3B promote naevi and melanoma via a novel C21orf91-driven proliferative phenotype

Polubothu, S.; Al-Olabi, L.; Lionarons, D. A.; Harland, M.; Thomas, A.; Horswell, S.; Hunt, L.; Wlodarchak, N.; Aguilera, P.; Brand, S.; Bryant, D.; Beales, P.; Carrera, C.; Chen, H.; Elgar, G.; Harwood, C. A.; Howell, M.; Jenkins, D.; Larue, L.; Loughlin, S.; MacDonald, J.; Malvehy, J.; Barberan Martin, S.; Martins da Silva, V.; Molina, M.; Morrogh, D.; Moulding, D.; Nsengimana, J.; Pittman, A.; Puig-Butille, J.-A.; Parmar, K.; Sebire, N. J.; Scherer, S.; Stadnik, P.; Stanier, P.; Tell-Marti, G.; Waelchli, R.; Zarrei, M.; Zecchin, D.; Puig, S.; Bataille, V.; Xing, Y.; Healey, E.; Moore, G. E.

10.1101/672576 — genomics — Posted on 2019-06-15

1526 Binned Relative Environmental Change Indicator (BRECI): A tool to communicate the nature of differences between environmental niche model outputs

Wilson, P. D.

10.1101/672618 — ecology — Posted on 2019-06-15

1527 The VTA modulates a frequency-specific gain of thalamocortical inputs in infragranular layers of the gerbil auditory cortex

Brunk, M. G. K.; Deane, K. E.; Kisse, M.; Deliano, M.; Ohl, F. W.; Lippert, M. T.; Happel, M. F. K.

10.1101/669168 — neuroscience — Posted on 2019-06-15

1528 Neuropathology of RAN translation proteins in Fragile X-associated Tremor/Ataxia Syndrome

Krans, A.; Skariah, G.; Zhang, Y.; Bayly, B.; Todd, P.

10.1101/672444 — neuroscience — Posted on 2019-06-15

1529 Quantitatively Partitioning Microbial Genomic Traits among Taxonomic Ranks across the Microbial Tree of Life

Royalty, T. M.; Steen, A. D.

10.1101/520973 — microbiology — Posted on 2019-06-15

1530 Transcriptome characterization analysis and molecular profiles of obligatory diapause induction of the Chinese citrus fruit fly, Bactrocera minax (Diptera: Tephritidae)

Zhou, Z.; Dong, X.; Li, C.

10.1101/672642 — developmental biology — Posted on 2019-06-15

1531 Wikipedia network analysis of cancer interactions and world influence

Rollin, G.; Lages, J.; Shepelyansky, D.

10.1101/527879 — bioinformatics — Posted on 2019-06-15

1532 Primary human chondrocytes respond to compression with plasma membrane receptors and by microtubule activation: a phosphoproteomic study

Zignego, D. L.; Hilmer, J. K.; Bothner, B.; Schell, W. J.; June, R.

10.1101/672352 — bioengineering — Posted on 2019-06-15

1533 RIGBOX: AN OPEN-SOURCE TOOLBOX FOR PROBING NEURONS AND BEHAVIOR

Bhagat, J.; Wells, M. J.; Peters, A. J.; Harris, K. D.; Carandini, M.; Burgess, C. P.

10.1101/672204 — neuroscience — Posted on 2019-06-15

1534 Decoding of selective attention to continuous speech from the human auditory brainstem response

Etard, O.; Kegler, M.; Braiman, C.; Forte, A. E.; Reichenbach, T.

10.1101/259853 — neuroscience — Posted on 2019-06-15

1535 Novel syngeneic animal model of tobacco-associated oral cancer reveals the activity of in situ anti-CTLA-4

Wang, Z.; Wu, V. H.; Allevato, M. M.; Gilardi, M.; He, Y.; Callejas-Valera, J. L.; Vitale-Cross, L.; Martin, D.; Amornphimoltham, P.; Mcdermott, J.; Goto, Y.; Molinolo, A. A.; Sharabi, A. B.; Cohen, E. E. W.; Chen, Q.; Lyons, G.; Alexandrov, L. B.; Gutkind, J. S.

10.1101/672527 — cancer biology — Posted on 2019-06-15

1536 Accurate estimation of cell composition in bulk expression through robust integration of single-cell information

Jew, B.; Alvarez, M.; Rahmani, E.; Miao, Z.; Ko, A.; Sul, J. H.; Pietiläinen, K. H.; Pajukanta, P.; Halperin, E.

10.1101/669911 — bioinformatics — Posted on 2019-06-15

1537 Spatiotemporal patterns of transcranial electrical stimulation can strengthen the metamemory of individual episodic memories in humans

Pilly, P. K.; Skorheim, S. W.; Hubbard, R. J.; Ketz, N. A.; Roach, S. M.; Jones, A. P.; Robert, B.; Bryant, N. B.; Lerner, I.; Hartholt, A.; Mullins, T. S.; Choe, J.; Clark, V. P.; Howard, M. D.

10.1101/672378 — neuroscience — Posted on 2019-06-15

1538 Tissue-specific 3 prime end-adenylation of miR-125b mediates cell survival

Blahna, M. T.; Neel, J.-C.; Yu, G.; Louie, J.; Ghatpande, P.; Lagna, G.; Hata, A.

10.1101/672436 — molecular biology — Posted on 2019-06-15

1539 Integrated analysis of directly captured microRNA targets reveals the impact of microRNAs on mammalian transcriptome

Bjerke, G.; Yi, R.

10.1101/672469 — molecular biology — Posted on 2019-06-15

1540 Oct4 mediated inhibition of Lsd1 activity promotes the active and primed state of pluripotency enhancers

Gowher, H.; AlAbdi, L.; Saha, D.; He, M.; Dar, M. S.; Utturkar, S. M.; Sudyanti, P. A.; McCune, S.; Spears, B. H.; Breedlove, J. A.; Lanman, N. A.

10.1101/672451 — developmental biology — Posted on 2019-06-15

1541 DNA Punch Cards: Encoding Data on Native DNA Sequences via Topological Modifications

Tabatabaei, S. K.; Wang, B.; Athreya, N. B. M.; Enghiad, B.; Hernandez, A. G.; Leburton, J.-P.; Soloveichik, D.; Zhao, H.; Milenkovic, O.

10.1101/672394 — synthetic biology — Posted on 2019-06-15

1542 Distinct roles of parvalbumin and somatostatin interneurons in the synchronization of spike-times in the neocortex

Jang, H. J.; Chung, H.; Rowland, J. W.; Richards, B. A.; Kohl, M.; Kwag, J.

10.1101/671743 — neuroscience — Posted on 2019-06-15

1543 Cortical thickness and functional networks modules by cortical lobes

Vuksanovic, V.

10.1101/670232 — neuroscience — Posted on 2019-06-15

1544 Increased O-GlcNAcylation rapidly decreases GABAAR currents in hippocampus yet depresses neuronal output

Stewart, L. T.; Abiraman, K.; Chatham, J. C.; McMahon, L. L.

10.1101/672055 — neuroscience — Posted on 2019-06-15

1545 Fungal virulence depends on interactions between pathogen ploidy and genetic background in healthy and immunocompromised hosts

Feistel, D. J.; Elmostafa, R. B.; Hickman, M. A.

10.1101/672519 — genetics — Posted on 2019-06-15

1546 A mechanical model reveals that non-axisymmetric buckling lowers the energy barrier associated with membrane neck constriction

Vasan, R.; Rudraraju, S.; Akamatsu, M.; Garikipati, K.; Rangamani, P.

10.1101/672485 — biophysics — Posted on 2019-06-15

1547 Optogenetic Modulation of Cortical Neurons Using Organic Light Emitting Diodes (OLEDs)

Sridharan, A.; Shah, A.; Sampath Kumar, S.; Kyeh, J.; Smith, J.; Blain-Christen, J.; Muthuswamy, J.

10.1101/669986 — bioengineering — Posted on 2019-06-15

1548 Wide distribution of phage that infect freshwater SAR11 bacteria

Chen, L.-X.; Zhao, Y.; McMahon, K. D.; Mori, J. F.; Jessen, G. L.; Nelson, T. C.; Warren, L. A.; Banfield, J. F.

10.1101/672428 — microbiology — Posted on 2019-06-15

1549 CelltrackR: an R package for fast and flexible analysis of immune cell migration data

Wortel, I. M. N.; Dannenberg, K.; Berry, J. C.; Miller, M. J.; Textor, J.

10.1101/670505 — bioinformatics — Posted on 2019-06-15

1550 Association of the types of alcoholic beverages and blood lipids in a local population in Jharkhand, India

Verma, S. K.; Rout, J.; Biswas, S.; Tripathy, U.

10.1101/439042 — biochemistry — Posted on 2019-06-15

1551 Attack and defence in cellular decision-making: lessons from machine learning

Rademaker, T. J.; Bengio, E.; Francois, P.

10.1101/366724 — biophysics — Posted on 2019-06-15

1552 The crystal structure of a cardiac calsequestrin filament reveals an atomic mechanism of calsequestrin-associated catecholaminergic polymorphic ventricular tachycardia

Titus, E.; Deiter, F.; Shi, C.; Wojciak, J.; Scheinman, M.; Jura, N.; Deo, R.

10.1101/672303 — biochemistry — Posted on 2019-06-15

1553 Barcoding biological reactions with DNA-functionalized vesicles

Peruzzi, J. A.; Jacobs, M. L.; Vu, T. Q.; Kamat, N. P.

10.1101/672287 — synthetic biology — Posted on 2019-06-15

1554 Impact of narrow spectrum Penicillin V on the oral and fecal resistome in a young child treated for otitis media

Sturod, K.; Dhariwal, A.; Dahle, U. R.; Vestrheim, D. F.; Petersen, F. C.

10.1101/672196 — microbiology — Posted on 2019-06-15

1555 Scale-dependent effects of geography, host ecology, and host genetics, on species composition and co-occurrence in a stickleback parasite metacommunity

Bolnick, D. I.; Resetarits, E. J.; Ballare, K.; Stuart, Y.; Stutz, W. E.

10.1101/672410 — ecology — Posted on 2019-06-15

1556 PICRUSt2: An improved and extensible approach for metagenome inference

Douglas, G. M.; Maffei, V. J.; Zaneveld, J.; Yurgel, S. N.; Brown, J. R.; Taylor, C. M.; Huttenhower, C.; Langille, M. G. I.

10.1101/672295 — bioinformatics — Posted on 2019-06-15

1557 Topoisomerases modulate the timing of meiotic DNA breakage and repair

Heldrich, J.; Sun, X.; Vale-Silva, L. A.; Markowitz, T. E.; Hochwagen, A.

10.1101/672337 — genomics — Posted on 2019-06-15

1558 siQ-ChIP:A reverse-engineered quantitative framework for ChIP-sequencing

Dickson, B.; Tiedemann, R. L.; Chomiak, A. A.; Vaughan, R. M.; Cornett, E. M.; Rothbart, S. B.

10.1101/672220 — genomics — Posted on 2019-06-15

1559 Optimizing Phylogenomics with Rapidly Evolving Long Exons: Comparison with Anchored Hybrid Enrichment and Ultraconserved Elements

Karin, B. R.; Gamble, T.; Jackman, T. R.

10.1101/672238 — evolutionary biology — Posted on 2019-06-15

1560 Probabilistic Models of Larval Zebrafish Behavior: Structure on Many Scales

Johnson, R. E.; Linderman, S.; Panier, T.; Wee, C. L.; Song, E.; Herrera, K. J.; Miller, A.; Engert, F.

10.1101/672246 — animal behavior and cognition — Posted on 2019-06-15

1561 Multiple conformations facilitate PilT function in the type IV pilus

McCallum, M.; Benlekbir, S.; Nguyen, S.; Tammam, S.; Rubinstein, J. L.; Burrows, L. L.; Howell, P. L.

10.1101/672212 — microbiology — Posted on 2019-06-15

1562 Chromosome level draft genomes of the fall armyworm, Spodoptera frugiperda (Lepidoptera: Noctuidae), an alien invasive pest in China

10.1101/671560 — genomics — Posted on 2019-06-14

1563 Diverse communities behave like typical random ecosystems

Cui, W.; Marsland, R.; Mehta, P.

10.1101/596551 — ecology — Posted on 2019-06-14

1564 Lactation curve model with explicit representation of perturbations as a phenotyping tool for dairy livestock precision farming.

Ben Abdelkrim, A.; Puillet, L.; Gomes, P.; Martin, O.

10.1101/661249 — zoology — Posted on 2019-06-14

1565 TrkB-expressing paraventricular hypothalamic neurons suppress appetite through multiple neurocircuits

An, J. J.; Kinney, C. E.; Liao, G.-Y.; Kremer, E. J.; Xu, B.

10.1101/671875 — neuroscience — Posted on 2019-06-14

1566 A new role for Notch in control of polarity and asymmetric cell division of developing T cells

Charnley, M.; Ludford-Menting, M.; Pham, K.; Russell, S. M.

10.1101/628602 — cell biology — Posted on 2019-06-14

1567 Healthy ageing and sentence production: Disrupted lexical access in the context of intact syntactic planning

Hardy, S. M.; Segaert, K.; Wheeldon, L.

10.1101/327304 — neuroscience — Posted on 2019-06-14

1568 Oxytocin amplifies sex differences in human mate choice

Xu, L.; Becker, B.; Luo, R.; Zheng, X.; Zhao, W.; Zhang, Q.; Kendrick, K.

10.1101/416198 — neuroscience — Posted on 2019-06-14

1569 Neural measures of subsequent memory reflect endogenous variability in cognitive function

Weidemann, C. T.; Kahana, M. J.

10.1101/576173 — neuroscience — Posted on 2019-06-14

1570 Toxoplasma F-Box Protein 1 is Required for Daughter Cell Scaffold Function During Parasite Replication

Baptista, C. G.; Lis, A.; Deng, B.; Gas-Pascual, E.; Dittmar, A.; Sigurdson, W.; West, C. M.; Blader, I. J.

10.1101/511386 — microbiology — Posted on 2019-06-14

1571 Women with isolated fasting hyperglycemia in pregnancy are at a higher genetic risk for type 2 diabetes

Hughes, A. E.; Hayes, M. G.; Egan, A. M.; Patel, K. A.; Scholtens, D. M.; Lowe, L. P.; Lowe, W. L.; Dunne, F. P.; Hattersley, A. T.; Freathy, R. M.

10.1101/671057 — genetics — Posted on 2019-06-14

1572 Geometrical constraints greatly hinder formin mDia1 activity

Suzuki, E. L.; Guichard, B.; Romet-Lemonne, G.; Jegou, A.

10.1101/671842 — biophysics — Posted on 2019-06-14

1573 RamaNet: Computational De Novo Protein Design using a Long Short-Term Memory Generative Adversarial Neural Network

Sabban, S.; Markovsky, M.

10.1101/671552 — bioinformatics — Posted on 2019-06-14

1574 Two distinct functional axes of positive feedback-enforced PRC2 recruitment in mouse embryonic stem cells

Perino, M.; van Mierlo, G.; Wardle, S. M. T.; Marks, H.; Veenstra, G. J. C.

10.1101/669960 — molecular biology — Posted on 2019-06-14

1575 In-vivo targeted tagging of RNA isolates cell specific transcriptional responses to environmental stimuli and identifies liver-to-adipose RNA transfer

Darr, J.; Lassi, M.; Tomar, A.; Gerlini, R.; Scheid, F.; Hrabe de Angelis, M.; Witting, M.; Teperino, R.

10.1101/670398 — molecular biology — Posted on 2019-06-14

1576 Control of Hematopoietic Stem Cell Function Through Epigenetic Regulation of Energy Metabolism and Genome Integrity

Yang, Z.; Shah, K.; Khodadadi-Jamayran, A.; Jiang, H.

10.1101/554519 — developmental biology — Posted on 2019-06-14

1577 RNA velocity and protein acceleration from single-cell multiomics experiments

Gorin, G.; Svensson, V.; Pachter, L.

10.1101/658401 — bioinformatics — Posted on 2019-06-14

1578 Neanderthal-Denisovan ancestors interbred with a distantly-related hominin

Rogers, A. R.; Harris, N. S.; Achenbach, A. A.

10.1101/657247 — evolutionary biology — Posted on 2019-06-14

1579 Membrane-type 1 matrix metalloproteinase (MMP-14) modulates tissue homeostasis by a non-proteolytic mechanism

Attur, M. G.; Lu, C.; Zhang, X.; Alexandre, C.; Valacca, C.; Zheng, S.; Meikle, S.; Brukner Dabovic, B.; Tassone, E.; Yang, Q.; Kolupaeva, V.; Yakar, S.; Abramson, S. B.; Mignatti, P.

10.1101/631739 — cell biology — Posted on 2019-06-14

1580 Robust characterization of two distinct glutarate sensing transcription factors found in Pseudomonas putida L-lysine metabolism

Thompson, M. G.; Costello, Z.; Hummel, N. F. C.; Cruz-Morales, P.; Blake-Hedges, J. M.; Krishna, R. N.; Skyrud, W.; Incha, M. R.; Shih, P. M.; Garcia-Martin, H.; Keasling, J. D.

10.1101/557751 — synthetic biology — Posted on 2019-06-14

1581 Probabilistic representation in human visual cortex reflects uncertainty in serial decisions

van Bergen, R. S.; Jehee, J. F. M.

10.1101/671958 — neuroscience — Posted on 2019-06-14

1582 The role of premature evidence accumulation in making difficult perceptual decisions under temporal uncertainty

Devine, C. A.; Gaffney, C.; Loughnane, G. M.; Kelly, S. P.; O'Connell, R. G.

10.1101/655266 — neuroscience — Posted on 2019-06-14

1583 Halophilic microbial community compositional shift after a rare rainfall in the Atacama Desert

Uritskiy, G.; Getsin, S.; Munn, A.; Gomez-Silva, B.; Davila, A.; Glass, B.; Taylor, J.; DiRuggiero, J.

10.1101/442525 — microbiology — Posted on 2019-06-14

1584 Myo1e modulates the recruitment of B cells to inguinal lymph nodes

Giron-Perez, D. A.; Santos-Argumedo, L.; Vadillo, E.; Schnoor, M.

10.1101/668608 — immunology — Posted on 2019-06-14

1585 Maximum likelihood method quantifies the overall contribution of gene-environment interaction to complex traits: an application to obesity traits

Sulc, J.; Mounier, N.; Gunther, F.; Winkler, T.; Wood, A.; Frayling, T.; Heid, I.; Robinson, M.; Kutalik, Z.

10.1101/632380 — epidemiology — Posted on 2019-06-14

1586 MTF1, a classic metal sensing transcription factor, promotes myogenesis in response to copper.

Tavera-Montanez, C.; Hainer, S. J.; Cangussu, D.; Gordon, S. J. V.; Xiao, Y.; Reyes-Gutierrez, P.; Imbalzano, A. N.; Navea, J. G.; Fazzio, T. G.; PADILLA-BENAVIDES, T.

10.1101/534271 — cell biology — Posted on 2019-06-14

1587 Reversal learning performance in the XY* mouse model of Klinefelter and Turner Syndromes

Aarde, S. M.; Hrncir, H.; Arnold, A. P.; Jentsch, J. D.

10.1101/672022 — animal behavior and cognition — Posted on 2019-06-14

1588 Decoding the neuronal correlates of motion-in-depth from EEG

Himmelberg, M. M.; Segala, F. G.; Maloney, R. T.; Wade, A. R.

10.1101/661991 — neuroscience — Posted on 2019-06-14

1589 A neurally plausible model for online recognition and postdiction

Wenliang, L. K.; Sahani, M.

10.1101/672089 — neuroscience — Posted on 2019-06-14

1590 Structural basis of p62/SQSTM1 helical filaments, their presence in p62 bodies and role in cargo recognition in the cell

Jakobi, A. J.; Huber, S. T.; Mortensen, S. A.; Schultz, S. W.; Palara, A.; Kuhm, T.; Shrestha, B. K.; Larmark, T.; Hagen, W. J. H.; Wilmanns, M.; Johansen, T.; Brech, A.; Sachse, C.

10.1101/671792 — molecular biology — Posted on 2019-06-14

1591 Novel Quinazoline derivatives inhibited HCV Serine protease and viral replication in Huh-7 cells.

Rothan, H. A.; Yusof, R.; Faraj, F. L.; Teoh, T. C.

10.1101/671313 — microbiology — Posted on 2019-06-14

1592 Chromosome level draft genomes of the fall armyworm, Spodoptera frugiperda (Lepidoptera: Noctuidae), an alien invasive pest in China

10.1101/671560 — genomics — Posted on 2019-06-14

1593 Single-cell profiling guided combinatorial immunotherapy for fast-evolving CDK4/6 inhibitor resistant HER2-positive breast cancer

Wang, Q.; Guldner, I. M.; Golomb, S. M.; Sun, L.; Harris, J.; Lu, X.; Zhang, S.

10.1101/671198 — cancer biology — Posted on 2019-06-14

1594 Massively Parallel FPGA Hardware for Spike-By-Spike Networks

Rotermund, D.; Pawelzik, K. R.

10.1101/500280 — bioinformatics — Posted on 2019-06-14

1595 Cusp-artifacts in high order superresolution optical fluctuation imaging

Yi, X.; Weiss, S.

10.1101/545574 — bioengineering — Posted on 2019-06-14

1596 MicroRNA-transcriptome networks in whole blood and monocytes of women undergoing preterm labor

Paquette, A. G.; Shynlova, O.; Wu, X.; Kibschull, M.; Wang, K.; Price, N. D.; Lye, S.

10.1101/575944 — systems biology — Posted on 2019-06-14

1597 Dissociating activation and integration of discourse referents: evidence from ERPs and oscillations

Coopmans, C. W.; Nieuwland, M. S.

10.1101/671933 — neuroscience — Posted on 2019-06-14

1598 Excitatory GABAergic signalling is associated with acquired benzodiazepine resistance in status epilepticus

Burman, R. J.; Selfe, J. S.; Lee, H. J.; van den Berg, M.; Calin, A.; Codadu, N. K.; Wright, R.; Newey, S. E.; Parrish, R. R.; Katz, A. A.; Wilmshurst, J. M.; Akerman, C. J.; Trevelyan, A.; Raimondo, J. V.

10.1101/478594 — neuroscience — Posted on 2019-06-14

1599 Long-term impact of fecal transplantation in healthy volunteers

Goloshchapov, O. V.; Olekhnovich, E. I.; Sidorenko, S. V.; Moiseev, I. S.; Kucher, M. A.; Fedorov, D. E.; Pavlenko, A. V.; Manolov, A. I.; Gostev, V. V.; Veselovsky, V. A.; Klimina, K. M.; Kostryukova, E. S.; Bakin, E. A.; Shvetcov, A. N.; Gumbatova, E. D.; Klementeva, R. V.; Shcherbakov, A. A.; Gorchakova, M. V.; Egozcue, J. J.; Pawlowsky-Glahn, V.; Suvorova, M. A.; Chukhlovin, A. B.; Govorun, V. M.; Ilina, E. N.; Afanasyev, B. V.

10.1101/671644 — microbiology — Posted on 2019-06-14

1600 A young age of subspecific divergence in the desert locust Schistocerca gregaria

Chapuis, M.-P.; Raynal, L.; Plantamp, C.; Blondin, L.; Marin, J.-M.; Estoup, A.

10.1101/671867 — evolutionary biology — Posted on 2019-06-14

1601 Molecular function limits divergent protein evolution on planetary timescales

Konate, M.; Plata, G.; Park, J.; Usmanova, D. R.; Wang, H. H.; Vitkup, D.

10.1101/198663 — evolutionary biology — Posted on 2019-06-14

1602 Par protein localization during the early development of Mnemiopsis leidyi suggests different modes of epithelial organization in Metazoa

Salinas-Saavedra, M.; Martindale, M. Q.

10.1101/431114 — developmental biology — Posted on 2019-06-14

1603 Lop-eared rabbits have more aural and dental problems than erect-eared rabbits: a rescue population study

Johnson, J. C.; Burn, C. C.

10.1101/671859 — zoology — Posted on 2019-06-14

1604 Nitrogen Fertilisers Shape The Composition And Predicted Functions Of The Microbiota Of Field-Grown Tomato Plants

Caradonia, F.; Ronga, D.; Catellani, M.; Giaretta Azevedo, C. V.; Alegria Terrazas, R.; Robertson-Albertyn, S.; Francia, E.; Bulgarelli, D.

10.1101/672162 — plant biology — Posted on 2019-06-14

1605 Herbal tablet of Pueraria tuberosa water extract suppresses the alloxan induced liver damage and hyperglycemia in rats

Pandey, H.; Srivastava, S.; Tripathi, Y. B.

10.1101/671594 — pharmacology and toxicology — Posted on 2019-06-14

1606 The Turning and Barrier Course: a standardized tool for identifying freezing of gait and demonstrating the efficacy of deep brain stimulation

O'Day, J.; Syrkin-Nikolau, J.; Anidi, C.; Kidzinski, L.; Delp, S.; Bronte-Stewart, H.

10.1101/671479 — neuroscience — Posted on 2019-06-14

1607 Disrupted information flow in resting-state in adolescents with sports related concussion

Hristopulos, D.; Babul, A.; Babul, S.; Brucar, L.; Virji-Babul, N.

10.1101/671685 — neuroscience — Posted on 2019-06-14

1608 Auditory predictions and prediction errors in response to self-initiated vowels

Knolle, F.; Schwartze, M.; Schroeger, E.; Kotz, S. A.

10.1101/671990 — neuroscience — Posted on 2019-06-14

1609 Real-time detection of neural oscillation bursts allows behaviourally relevant neurofeedback

Karvat, G.; Schneider, A.; Alyahyaey, M.; Steenbergen, F.; Diester, I.

10.1101/671602 — neuroscience — Posted on 2019-06-14

1610 Investigation of Inter-Individual Variability in CD8 T Cell Responses with Nonlinear Mixed Effects Models

Audebert, C.; Laubreton, D.; Arpin, C.; Gandrillon, O.; Marvel, J.; Crauste, F.

10.1101/671891 — immunology — Posted on 2019-06-14

1611 Robust estimation of heritability and predictive accuracy in plant breeding: evaluation using simulation and empirical data

Lourenco, V. M.; Ogutu, J. O.; Piepho, H.-P.

10.1101/671768 — genomics — Posted on 2019-06-14

1612 Targeting of the dosage-compensated male X-chromosome during early Drosophila development

Rieder, L. E.; Jordan, W. T.; Larschan, E. N.

10.1101/671073 — developmental biology — Posted on 2019-06-14

1613 The ATPase cycle of Human Muscle Myosin II Isoforms: Adaptation of a single mechanochemical cycle for different physiological roles.

Johnson, C. A.; Walklate, J.; Svicevic, M.; Mijailovich, S. M.; Vera, C.; Karabina, A.; Leinwand, L. A.; Geeves, M. A.

10.1101/672030 — biochemistry — Posted on 2019-06-14

1614 Viral satellites exploit phage proteins to escape degradation of the bacterial host chromosome

McKitterick, A.; Hays, S.; Alam, M.; Seed, K.

10.1101/671271 — microbiology — Posted on 2019-06-14

1615 Strategies for Integrating Single-Cell RNA Sequencing Results With Multiple Species

Hart, R. P.

10.1101/671115 — bioinformatics — Posted on 2019-06-14

1616 Central Nervous System Delivery and Biodistribution Analysis of an Antibody-Enzyme Fusion for the Treatment of Lafora Disease

Austin, G. L.; Simmons, Z. R.; Klier, J. E.; Hodges, B. L.; Shaffer, R.; McKnight, T. R.; Pauly, J. R.; Armstrong, D.; Vander Kooi, C. W.; Gentry, M. S.

10.1101/671214 — bioengineering — Posted on 2019-06-14

1617 Insights into Membrane Protein-Lipid Interactions from Free Energy Calculations

Corey, R. A.; Vickery, O. N.; Sansom, M. S.; Stansfeld, P.

10.1101/671750 — biochemistry — Posted on 2019-06-14

1618 Silencing of SmAgo2 increases abundance of retrotransposons in the parasitic flatworm Schistosoma mansoni.

Protasio, A. V.; Rawlinson, K. A.; Rinaldi, G.; Miska, E. A.

10.1101/670372 — molecular biology — Posted on 2019-06-14

1619 Chromosome level draft genomes of the fall armyworm, Spodoptera frugiperda (Lepidoptera: Noctuidae), an alien invasive pest in China

10.1101/671560 — genomics — Posted on 2019-06-14

1620 Cas9HF1 enhanced specificity in Ustilago maydis

Zuo, W.; Depotter, J. R.; Doehlemann, G.

10.1101/671826 — genetics — Posted on 2019-06-14

1621 The Non-random Location of Autosomal Genes that Participate in X Inactivation

Migeon, B. R.

10.1101/669929 — genetics — Posted on 2019-06-14

1622 Preferential phosphatidylinositol 5-phosphate binding contributes to a destabilization of the VHS domain structure of Tom1

Xiong, W.; Tang, T.-X.; Littleton, E.; Karcini, A.; Lazar, I. M.; Capelluto, D. G. S.

10.1101/671883 — biophysics — Posted on 2019-06-14

1623 Corruption of the Pearson correlation coefficient by measurement error: estimation, bias, and correction under different error models

Saccenti, E.; Hendriks, M.; Smilde, A.

10.1101/671693 — bioinformatics — Posted on 2019-06-14

1624 Multi-Subject Stochastic Blockmodels for Adaptive Analysis of Individual Differences in Human Brain Network Cluster Structure.

Pavlovic, D. M.; Guillaume, B. L. R.; Towlson, E. K.; Kuek, N. M. Y.; Afyouni, S.; Vertes, P. E.; Yeo, T. B. T.; Bullmore, E. T.; Nichols, T. E.

10.1101/672071 — neuroscience — Posted on 2019-06-14

1625 Cognitive salience of agreement features modulates language comprehension

Muralikrishnan, R.; Idrissi, A.

10.1101/671834 — neuroscience — Posted on 2019-06-14

1626 Inferring the collective dynamics of neuronal populations from single-trial spike trains using mechanistic models

Donner, C.; Opper, M.; Ladenbauer, J.

10.1101/671909 — neuroscience — Posted on 2019-06-14

1627 Challenging the boundaries of the physical self: purely distal cues in the environment impact body ownership

Grechuta, K.; de la Torre Costa, J.; Rubio Ballester, B.; Verschure, P.

10.1101/672139 — neuroscience — Posted on 2019-06-14

1628 Decomposition disentangled: a test of the multiple mechanisms by which nitrogen enrichment alters litter decomposition

Pichon, N. A.; Cappelli, S.; Soliveres, S.; Hölzel, N.; Klaus, V. H.; Kleinebecker, T.; Allan, E.

10.1101/671545 — ecology — Posted on 2019-06-14

1629 Magnetic-alignment of polymer macro-nanodiscs enable residual dipolar couplings based high-resolution structural studies by NMR

Ravula, T.; Ramamoorthy, A.

10.1101/671982 — biophysics — Posted on 2019-06-14

1630 Histopathological study of different organs of charles foster strain rat under the exposure of Pueraria tuberosa.

Pandey, H.; Srivastava, S.; Singh, S.; Tripathi, Y. B.

10.1101/671529 — pharmacology and toxicology — Posted on 2019-06-14

1631 Archaeal ribosomal proteins possess nuclear localization signal-type motifs: implications for the origin of the cell nucleus

Melnikov, S. V.; Kwok, H. S.; Manakongtreecheep, K.; van den Elzen, A.; Thoreen, C. C.; Soll, D.

10.1101/671966 — evolutionary biology — Posted on 2019-06-14

1632 Extensive Evaluation of Weighted Ensemble Strategies for Calculating Rate Constants and Binding Affinities of Molecular Association/Dissociation Processes

Pratt, A.; Suarez, E.; Zuckerman, D.; Chong, L.

10.1101/671172 — biophysics — Posted on 2019-06-14

1633 Demultiplexing overlapping signaling scaffold functions to probe lipid messenger coupling to cytoskeletal dynamics.

Trenton, N. J.; McLaughlin, R. T.; Bellamkonda, S.; Tsao, D.; Mace, E.; orange, j.; Schweikhard, V.; Diehl, M. R.

10.1101/657049 — biophysics — Posted on 2019-06-14

1634 Cellular contractility coordinates cytoskeletal dynamics and cell behaviour during Drosophila abdominal morphogenesis

Pulido Companys, P.; Norris, A.; Bischoff, M.

10.1101/672006 — cell biology — Posted on 2019-06-14

1635 Systematic analysis of Plasmodium myosins reveals differential expression, localization and function in invasive and proliferative parasite stages

Wall, R. J.; ZEESHAN, M.; Katris, N. J.; Limenitakis, R.; Rea, E.; Stock, J.; Brady, D.; Waller, R. F.; Holder, A. A.; Tewari, R.

10.1101/671578 — cell biology — Posted on 2019-06-14

1636 Robin Hood: non-fitting, non-smoothing image detrending for bleaching correction

Nolan, R.; Iliopoulou, M.; Siebold, C.; Jones, E. Y.; Padilla-Parra, S.

10.1101/667824 — biophysics — Posted on 2019-06-14

1637 Chromatin nanoscale compaction in live cells visualized by acceptor-donor ratio corrected FRET between DNA dyes

Pelicci, S.; Diaspro, A.; Lanzano, L.

10.1101/671784 — biophysics — Posted on 2019-06-14

1638 Evaluating the ALERT algorithm for local outbreak onset detection in seasonal infectious disease surveillance data

Brown, A. C.; Lauer, S. A.; Robinson, C. C.; Nyquist, A.-C.; Rao, S.; Reich, N. G.

10.1101/664433 — epidemiology — Posted on 2019-06-14

1639 Community Engagement during outbreak response: standards, approaches, and lessons from the 2014-2016 Ebola outbreak in Sierra Leone

Bedson, J.; Jalloh, M. F.; Pedi, D.; Bah, S. M.; Owen, K.; Oniba, A.; Sangarie, M.; Fofanah, J.; Jalloh, M. B.; Sengeh, P.; Skrip, L. A.; Althouse, B. M.; Hebert-Dufresne, L.

10.1101/661959 — epidemiology — Posted on 2019-06-14

1640 Temporal trends in incidence of childhood cancer in Switzerland, 1985-2014

Sommer, G.; Schindler, M.; Redmond, S.; Pfeiffer, V.; Konstantinoudis, G.; Ammann, R. A.; Ansari, M.; Hengartner, H.; Michel, G.; Kuehni, C. E.

10.1101/670224 — epidemiology — Posted on 2019-06-14

1641 Circulating concentrations of micro-nutrients and risk of breast cancer: A Mendelian randomization study

Papadimitriou, N.; Dimou, N.; Gill, D.; Tzoulaki, I.; Murphy, N.; Riboli, E.; Lewis, S.; Martin, R.; Gunter, M.; Tsilidis, K.

10.1101/668186 — epidemiology — Posted on 2019-06-14

1642 Ultraviolet radiation exposure and melanoma: evidence for gene-environment interaction in a large prospective cohort

Olsen, C. M.; Pandya, N.; Law, M.; MacGregor, S.; Iles, M.; Thompson, B.; Green, A.; Neale, R.; Whiteman, D.

10.1101/666123 — epidemiology — Posted on 2019-06-14

1643 Modelling the impact of tuberculosis preventive therapy: the importance of disease progression assumptions

Sumner, T.; White, R. G.

10.1101/666669 — epidemiology — Posted on 2019-06-14

1644 Opioid mortality following implementation of medical marijuana programs (1999-2017) in the United States

Kaufman, D. E.; Nihal, A. M.; Leppo, J. D.; Staples, K. M.; McCall, K. L.; PIPER, B. J.

10.1101/670059 — epidemiology — Posted on 2019-06-14

1645 Combining weather patterns and cycles of population susceptibility to forecast dengue fever epidemic years in Brazil: a dynamic, ensemble learning approach

McGough, S. F.; Clemente, C. L.; Kutz, J. N.; Santillana, M.

10.1101/666628 — epidemiology — Posted on 2019-06-14

1646 Cohort profile: The LipidCardio Study - Role of Lipoproteins in Cardiovascular Disease

Koenig, M.; Joshi, S.; Leistner, D. M.; Landmesser, U.; Sinning, D.; Steinhagen-Thiessen, E.; Demuth, I.

10.1101/669150 — epidemiology — Posted on 2019-06-14

1647 Vaccination strategies to control Ebola epidemics in the context of variable household inaccessibility levels

Chowell, G.; Tariq, A.; Kiskowski, M.

10.1101/665646 — epidemiology — Posted on 2019-06-14

1648 PIWI proteins as prognostic markers in cancer: a systematic review and meta-analysis

Mentis, A.-F.; Dardiotis, E.; Papavassiliou, A. G.

10.1101/663468 — epidemiology — Posted on 2019-06-14

1649 Genetic determinants of lipids and cardiovascular disease outcomes: a wide-angled Mendelian randomization investigation

Allara, E.; Morani, G.; Carter, P.; Gkatzionis, A.; Zuber, V.; Foley, C. N.; Rees, J. M.; Mason, A. M.; Bell, S.; Gill, D.; Butterworth, A. S.; Di Angelantonio, E.; Peters, J.; Burgess, S.

10.1101/668970 — epidemiology — Posted on 2019-06-14

1650 PARP1 as a biomarker for early detection and intraoperative tumor delineation in epithelial cancers - first-in-human results

Kossatz, S.; Pirovano, G.; Demetrio De Souza Franca, P.; Strome, A. L.; Sunny, S. P.; Karassawa Zanoni, D.; Mauguen, A.; Carney, B.; Brand, C.; Shah, V.; Ramanajinappa, R. D.; Hedne, N.; Birur, P.; Sihag, S.; Ghossein, R. A.; Gonen, M.; Strome, M.; Suresh, A.; Molena, D.; Kuriakose, M. A.; Patel, S. G.; Reiner, T.

10.1101/663385 — clinical trials — Posted on 2019-06-14

1651 BTLA and PD-1 employ distinct phosphatases to differentially repress T cell signaling

Xu, X.; Fulzele, A.; Zhao, Y.; Wu, Z.; Hu, Y.; Jiang, Y.; Ma, Y.; Wang, H.; Fu, G.; Bennett, E.; HUI, E.

10.1101/669812 — cell biology — Posted on 2019-06-14

1652 Surface protein imputation from single cell transcriptomes by deep neural networks

Zhou, Z.; Wang, J.; Ye, C.; Zhang, N.

10.1101/671180 — bioinformatics — Posted on 2019-06-14

1653 Diverse noncanonical PAMs recognized by SpCas9 in human cells

Hu, Z.; Wang, D.; Zhang, C.; Wang, S.; Gao, S.; Hou, L.; Wang, H.; Wang, Y.

10.1101/671503 — bioengineering — Posted on 2019-06-14

1654 Seven-year-olds’ recollection of non-adjacent dependencies after overnight retention

Schaadt, G.; Paul, M.; Muralikrishnan, R.; Männel, C.; Friederici, A. D.

10.1101/670257 — neuroscience — Posted on 2019-06-14

1655 The genomic architecture of blood metabolites based on a decade of genome-wide analyses

Hagenbeek, F. A.; Pool, R.; van Dongen, J.; Draisma, H. H. M.; Hottenga, J. J.; Willemsen, G.; Abdellaoui, A.; Fedko, I. O.; den Braber, A.; Visser, P. J.; de Geus, E. J.; Willems van Dijk, K.; Verhoeven, A.; Suchiman, H. E. D.; Beekman, M.; Slagboom, P. E.; van Duijn, C. M.; BBMRI-NL Consortium, ; Harms, A. C.; Hankemeier, T.; Bartels, M.; Nivard, M. G.; Boomsma, D. I.

10.1101/661769 — genetics — Posted on 2019-06-14

1656 Estimating abundance with interruptions in data collection using open population spatial capture-recapture models

Milleret, C.; Dupont, P.; Chipperfield, J.; Turek, D.; Broseth, H.; Gimenez, O.; de Valpine, P.; Bischof, R.

10.1101/671461 — ecology — Posted on 2019-06-14

1657 A new tool CovReport generates easy-to-understand sequencing coverage summary for diagnostic reports.

Gorokhov, M.; Cerino, M.; Bartoli, M.; Krahn, M.; Gorokhova, S.

10.1101/671511 — bioinformatics — Posted on 2019-06-14

1658 Nationwide prediction of type 2 diabetes comorbidities

Dworzynski, P.; Aasbrenn, M.; Rostgaard, K.; Melbye, M.; Gerds, T. A.; Hjalgrim, H.; Pers, T.

10.1101/664722 — bioinformatics — Posted on 2019-06-14

1659 The HSV-1 immediate early protein ICP22 is a J-like protein required for Hsc70 reorganization during lytic infection

Adlakha, M. K.; Livingston, C. M.; Bezsonova, I.; Weller, S. K.

10.1101/671412 — molecular biology — Posted on 2019-06-14

1660 Exploring novel probiotic mechanisms of Streptococcus A12 with functional genomics

Lee, K.; Walker, A. R.; Chakraborty, B.; Kaspar, J. R.; Nascimento, M. M.; Burne, R. A.

10.1101/671420 — microbiology — Posted on 2019-06-14

1661 Occurrence of cross-resistance and beta-lactam seesaw effect in glycopeptide, lipopeptide, and lipoglycopeptide-resistant MRSA correlates with membrane phosphatidylglycerol levels

Hines, K. M.; Shen, T.; Ashford, N. K.; Waalkes, A.; Penewit, K.; Holmes, E. A.; McLean, K. A.; Salipante, S.; Werth, B. J.; Xu, L.

10.1101/671438 — microbiology — Posted on 2019-06-14

1662 Predicting Functional Effects of Missense Variants in Voltage-Gated Sodium and Calcium Channels

Heyne, H.; Palmer, D.; Iqbal, S.; Baez-Nieto, D.; Brunklaus, A.; the Epi25 Collaborative, ; Johannesen, K.; Lauxmann, S.; Lemke, J.; Moller, R.; Perez-Palma, E.; Scholl, U.; Syrbe, S.; Lerche, H.; May, P.; Lal, D.; Campbell, A.; Pan, J.; Wang, H.-R.; Daly, M.

10.1101/671453 — genetics — Posted on 2019-06-14

1663 Synaptic mitochondria are critical for hair-cell synapse formation and function

Wong, H.-t.; Zhang, Q.; Beirl, A.; Petralia, R.; Wang, Y.-X.; Kindt, K.

10.1101/671701 — developmental biology — Posted on 2019-06-14

1664 The impact of body posture on intrinsic brain activity: the role of beta power at rest

Donno, B.; Migliorati, D.; Zappasodi, F.; Perrucci, M. G.; Costantini, M.

10.1101/671818 — neuroscience — Posted on 2019-06-14

1665 TCR convergence in individuals treated with immune checkpoint inhibition for cancer

Looney, T.; Topacio-Hall, D.; Lowman, G.; Conroy, J.; Morrison, C.; Oh, D.; Fong, L.; Zhang, L.

10.1101/665612 — cancer biology — Posted on 2019-06-14

1666 flowEMMi: An automated model-based clustering tool for microbial cytometric data

Ludwig, J.; Hoener zu Siederdissen, C.; Liu, Z.; Stadler, P. F.; Mueller, S.

10.1101/667691 — bioinformatics — Posted on 2019-06-14

1667 A way around the exploration-exploitation dilemma

Peterson, E. J.; Verstynen, T. V.

10.1101/671362 — animal behavior and cognition — Posted on 2019-06-14

1668 Neocortical inhibitory interneuron subtypes display distinct responses to synchrony and rate of inputs

Tran, M. M.; Prince, L. Y.; Gray, D.; Saad, L.; Chasiotis, H.; Kwag, J.; Kohl, M. M.; Richards, B. A.

10.1101/671248 — neuroscience — Posted on 2019-06-14

1669 An S-cone circuit for edge detection in the primate retina

Patterson, S. S.; Kuchenbecker, J. A.; Anderson, J. R.; Bordt, A. S.; Marshak, D. W.; Neitz, M.; Neitz, J.

10.1101/667204 — neuroscience — Posted on 2019-06-14

1670 Interpretable Multimodality Embedding of Cerebral Cortex Using Attention Graph Network for Identifying Bipolar Disorder

Yang, H.; Li, X.; Wu, Y.; Li, S.; Lu, S.; Duncan, J. S.; Gee, J. C.; Gu, S.

10.1101/671339 — neuroscience — Posted on 2019-06-14

1671 Entorhinal velocity signals reflect environmental geometry

Munn, R. G. K.; Mallory, C. S.; Hardcastle, K.; Chetkovich, D. M.; Giocomo, L. M.

10.1101/671222 — neuroscience — Posted on 2019-06-14

1672 Base-rate neglect and neural computations for subjective weight in probabilistic inference

Yang, Y.-Y.; Wu, S.-W.

10.1101/671396 — neuroscience — Posted on 2019-06-14

1673 Novel Quinazoline derivatives inhibited HCV Serine protease and viral replication in Huh-7 cells.

ROTHAN, H.; Yusof, R.; Faraj, F.; Teoh, T.

10.1101/671313 — microbiology — Posted on 2019-06-14

1674 Small-molecule control of super-Mendelian inheritance in gene drives

Lopez Del Amo, V.; Leger, B. S.; Cox, K. J.; Gill, S.; Bishop, A. L.; Scanlon, G. D.; Walker, J. A.; Gantz, V. M.; Choudhary, A.

10.1101/665620 — genetics — Posted on 2019-06-14

1675 Single-cell profiling guided combinatorial immunotherapy for fast-evolving CDK4/6 inhibitor resistant HER2-positive breast cancer

Zhang, S.; Wang, Q.; Guldner, I. M.; Golomb, S. M.; Sun, L.; Harris, J.; Lu, X.

10.1101/671198 — cancer biology — Posted on 2019-06-14

1676 Embedding to Reference t-SNE Space Addresses Batch Effects in Single-Cell Classification

Policar, P. G.; Strazar, M.; Zupan, B.

10.1101/671404 — bioinformatics — Posted on 2019-06-14

1677 Foot strike pattern during running alters muscle-tendon dynamics of the gastrocnemius and the soleus

Yong, J. R.; Dembia, C. L.; Silder, A.; Jackson, R. W.; Fredericson, M.; Delp, S. L.

10.1101/671370 — bioengineering — Posted on 2019-06-14

1678 Edem1 activity in the fat body regulates insulin signalling and metabolic homeostasis in Drosophila

Pathak, H.; Varghese, J.

10.1101/671305 — developmental biology — Posted on 2019-06-14

1679 Phase separation of TAZ compartmentalizes the transcription machinery to promote gene expression

Wu, T.; Lu, Y.; Gutman, O.; Lu, H.; Zhou, Q.; Henis, Y. I.; Luo, K.

10.1101/671230 — cell biology — Posted on 2019-06-14

1680 Meta-analysis of Gene Expression Microarray Datasets in Chronic Obstructive Pulmonary Disease

Rogers, L. R. K.; Verlinde, M.; Mias, G. I.

10.1101/671206 — molecular biology — Posted on 2019-06-14

1681 The endonuclease Cue2 cleaves mRNAs at stalled ribosomes during No Go Decay.

DOrazio, K. N.; Wu, C. C.-C.; Sinha, N.; Loll-Krippleber, R.; Brown, G. W.; Green, R.

10.1101/671099 — molecular biology — Posted on 2019-06-14

1682 A role for EP3 and its associated G protein, Gz, in negatively regulating beta-cell function and mass in the context of insulin resistance and obesity

Reuter, A.; Wisinski, J.; Peter, D.; Schaid, M.; Fenske, R.; Kimple, M. E.

10.1101/671289 — molecular biology — Posted on 2019-06-14

1683 Disentangling group specific QTL allele effects from genetic background epistasis using admixed individuals in GWAS: an application to maize flowering

Rio, S.; Mary-Huard, T.; Laurence, M.; Bauland, C.; Carinne, P.; Delphine, M.; Combes, V.; Alain, C.

10.1101/669721 — genetics — Posted on 2019-06-13

1684 Male sex chromosomal complement exacerbates the pathogenicity of Th17 cells in a chronic model of CNS autoimmunity.

Doss, P. M. I. A.; Baillargeon, J.; Yeola, A. P.; Williams, J. B.; Leclercq, M.; Joly-Beauparlant, C.; Alpaugh, M.; Anderson, A. C.; Droit, A.; Lassmann, H.; Moore, C. S.; Rangachari, M.

10.1101/640904 — immunology — Posted on 2019-06-13

1685 PDGFR alpha signaling in cardiac fibroblasts modulates quiescence, metabolism and self-renewal, and promotes anatomical and functional repair

S. Asli, N.; Xaymardan, M.; Patrick, R.; Farbehi, N.; Cornwell, J.; Forte, E.; Waardenberg, A. J.; Janbandhu, V.; Kesteven, S.; Chandrakanthan, V.; Malinowska, H.; Reinhard, H.; Schofield, P.; Christ, D.; Ahmed, I.; Bouveret, R.; Srivastava, S.; Mishra, R. K.; Dhawan, J.; Chong, J. J. H.; Nordon, R.; Macdonald, P.; Graham, R. M.; Feneley, M.; Harvey, R. P.

10.1101/225979 — cell biology — Posted on 2019-06-13

1686 SavvyCNV: genome-wide CNV calling from off-target reads

Laver, T. W.; De Franco, E.; Johnson, M. B.; Patel, K. A.; Ellard, S.; Weedon, M. N.; Flanagan, S. E.; Wakeling, M. N.

10.1101/617605 — bioinformatics — Posted on 2019-06-13

1687 Optimal Mass Transport Kinetic Modeling for Head and Neck DCE-MRI: Initial Analysis

Elkin, R.; Nadeem, S.; LoCastro, E.; Paudyal, R.; Hatzoglou, V.; Lee, N.; Shukla-Dave, A.; Deasy, J. O.; Tannenbaum, A.

10.1101/612770 — systems biology — Posted on 2019-06-13

1688 Spectral Hallmark of Auditory-Tactile Interactions in Somatosensory Cortex

Zhang, M.; Kwon, S. E.; Ben-Johny, M.; O'Connor, D. H.; Issa, J. B.

10.1101/668319 — neuroscience — Posted on 2019-06-13

1689 Persistent Features of Intermittent Transcription

Wilkinson, M.; Darmanis, S.; Pisco, A. O.; Huber, G.

10.1101/650895 — genomics — Posted on 2019-06-13

1690 Low oxygen enhances trophoblast column growth by potentiating the extravillous lineage and promoting LOX activity

Treissman, J.; Yuan, V.; Baltayeva, J.; Le, H. T.; Castellana, B.; Robinson, W. P.; Beristain, A. G.

10.1101/669796 — developmental biology — Posted on 2019-06-13

1691 MicroRNA miR-1002 enhances NMNAT-mediated stress response by modulating alternative splicing

Park, J.; Zhu, Y.; Tao, X.; Brazill, J. M.; Li, C.; Wuchty, S.; Zhai, G.

10.1101/641944 — neuroscience — Posted on 2019-06-13

1692 Modulation of tonotopic ventral MGB is behaviorally relevant for speech recognition.

Mihai, P. G.; Moerel, M.; de Martino, F.; Trampel, R.; Kiebel, S.; von Kriegstein, K.

10.1101/510164 — neuroscience — Posted on 2019-06-13

1693 An improved auxin-inducible degron system preserves native protein levels and enables rapid and specific protein depletion

Sathyan, K. M.; McKenna, B. D.; Anderson, W. D.; Duarte, F. M.; Core, L. J.; Guertin, M. J.

10.1101/585927 — molecular biology — Posted on 2019-06-13

1694 Recounting the FANTOM Cage Associated Transcriptome

Imada, E. L.; Sanchez, D. F.; Collado-Torres, L.; Wilks, C.; Matam, T.; Dinalankara, W.; Stupnikov, A.; Pereira Lobo, F. P.; Yip, C.-W.; Yasuzawa, K.; Kondo, N.; Itoh, M.; Suzuki, H.; Kasukawa, T.; Hon, C. C.; de Hoon, M. J.; Shin, J. W.; Carninci, P.; Jaffe, A. E.; Leek, J. T.; Favorov, A.; Franco, G. R.; Langmead, B.; Marchionni, L.

10.1101/659490 — genomics — Posted on 2019-06-13

1695 High-intensity interval training blunts exercise-induced changes in markers of mitochondrial biogenesis in human skeletal muscle

Granata, C.; Oliveira, R. S. F.; Little, J. P.; Bishop, D. J.

10.1101/580373 — physiology — Posted on 2019-06-13

1696 ABC-transporter activity and autocrine eicosanoid-signaling are required for germ cell migration a basal chordate

Kassmer, S. H.; Rodriguez, D. F.; De Tomaso, A. W.

10.1101/469098 — developmental biology — Posted on 2019-06-13

1697 Supervised dimension reduction for large-scale \"omics\" data with censored survival outcomes under possible non-proportional hazards

Spirko-Burns, L.; Devarajan, K.

10.1101/586529 — bioinformatics — Posted on 2019-06-13

1698 COMICS: A pipeline for the composite identification of selection across multiple genomic scans using Invariant Coordinate Selection in R

Nelson, J. T.; Cornejo, O. E.

10.1101/587469 — bioinformatics — Posted on 2019-06-13

1699 E2F1 Drives Breast Cancer Metastasis by Regulating the Target Gene FGF13 and Altering Cell Migration

Hollern, D. P.; Swiatnicki, M. R.; Rennhack, J. P.; Misek, S. A.; Matson, B. C.; McAuliff, A.; Gallo, K. A.; Caron, K. M.; Andrechek, E. R.

10.1101/671149 — cancer biology — Posted on 2019-06-13

1700 Oncoprotein CoAA repeats interact with RNA polymerase II CTD repeats

Xiong, S.; Brooks, Y. S.; Yang, Z.; Wu, J.; Zhang, L.; Dynan, W. S.; Xu, W.; O'Malley, B. W.; Ko, L.

10.1101/671156 — biochemistry — Posted on 2019-06-13

1701 Circuit-Specific Early Impairment of Proprioceptive Sensory Neurons in the SOD1G93A Mouse Model for ALS

Seki, S.; Yamamoto, T.; Quinn, K.; Spigelman, I.; Pantazis, A.; Olcese, R.; Wiedau-Pazos, M.; Chandler, S. H.; Venugopal, S.

10.1101/669788 — neuroscience — Posted on 2019-06-13

1702 Dynamic changes in the regulatory T cell heterogeneity and function by murine IL-2 mutein

Lu, D. R.; Wu, H.; Driver, I.; Ingersoll, S.; Sohn, S.; Wang, S.; Li, C.-M.; Phee, H.

10.1101/669978 — immunology — Posted on 2019-06-13

1703 A mesoderm-independent role for Nodal signaling in convergence & extension gastrulation movements

Williams, M. L.; Solnica-Krezel, L. L.

10.1101/671164 — developmental biology — Posted on 2019-06-13

1704 The Protein Mat(ters) - Revealing Biologically Relevant Mechanical Contribution of Collagen and Fibronectin Coated Micropatterns

Horvath, A. N.; Holenstein, C. N.; Silvan, U.; Snedeker, J. G.

10.1101/668905 — cell biology — Posted on 2019-06-13

1705 Islet vascularization is regulated by primary endothelial cilia via VEGF-A dependent signaling

Xiong, Y.; Scerbo, M. J.; Seelig, A.; Volta, F.; O'Brien, N.; Dicker, A.; Padula, D.; Lickert, H.; Gerdes, J. M.; Berggren, P.-O.

10.1101/670760 — physiology — Posted on 2019-06-13

1706 Early Stem Cell Aging in the Mature Brain

Ibrayeva, A.; Bay, M.; Pu, E.; Jorg, D.; Peng, L.; Jun, H.; Zhang, N.; Aaron, D.; Lin, C.; Resler, G.; Jang, M.-H.; Simons, B. D.; Bonaguidi, M. A.

10.1101/654608 — neuroscience — Posted on 2019-06-13

1707 Neural correlates of perceptual switching while listening to bistable auditory streaming stimuli

Higgins, N. C.; Little, D. F.; Yerkes, B. D.; Nave, K. M.; Kuruvilla-Mathew, A.; Elhilali, M.; Snyder, J. S.

10.1101/669424 — neuroscience — Posted on 2019-06-13

1708 Reduced prediction error responses in high- as compared to low-uncertainty musical contexts

Quiroga-Martinez, D. R.; Hansen, N. C.; Hoejlund, A.; Pearce, M.; Brattico, E.; Vuust, P.

10.1101/422949 — neuroscience — Posted on 2019-06-13

1709 The spread of gap-junction mediated activity in neocortex is modulated by extracellular potassium

Papasavvas, C. A.; Parrish, R. R.; Trevelyan, A. J.

10.1101/669226 — neuroscience — Posted on 2019-06-13

1710 Multifactorial motor behavior assessment for real-time evaluation of emerging therapeutics to treat neurologic impairments

Islam, R.; Cuellar, C.; Felmlee, B.; Riccelli, T.; Silvernail, J.; Boschen, S. L.; Grahn, P.; Lavrov, I.

10.1101/668327 — neuroscience — Posted on 2019-06-13

1711 Two distinct feedback codes in V1 for \"real\" and \"imaginary\" internal experiences

Bergmann, J.; Morgan, A. T.; Muckli, L.

10.1101/664870 — neuroscience — Posted on 2019-06-13

1712 Reprogramming of 24nt siRNAs in rice gametes

Li, C.; Xu, H.; Fu, F.-F.; Russell, S. D.; Sundaresan, V.; Gent, J. I.

10.1101/670463 — molecular biology — Posted on 2019-06-13

1713 Comparative genomic analyses reveal diverse virulence factors and antimicrobial resistance mechanisms in clinical Elizabethkingia meningoseptica strains

Chen, S.; Soehnlen, M.; Blom, J.; Terrapon, N.; Henrissat, B.; Walker, E.

10.1101/668061 — microbiology — Posted on 2019-06-13

1714 Phylogenomic analysis of Clostridium perfringens identifies isogenic strains in gastroenteritis outbreaks, and novel virulence-related features

Kiu, R.; Caim, S.; Pickard, D.; Painset, A.; Swift, C.; Dougan, G.; Mather, A. E.; Amar, C.; Hall, L. J.

10.1101/670448 — microbiology — Posted on 2019-06-13

1715 Activation of MAIT cells plays a critical role in viral vector vaccine immunogenicity

Provine, N.; Amini, A.; Garner, L.; Dold, C.; Hutchings, C.; FitzPatrick, M.; Silva Reyes, L.; Chinnakannan, S.; Oguti, B.; Raymond, M.; Capone, S.; Folgori, A.; Rollier, C.; Barnes, E.; Pollard, A.; Klenerman, P.

10.1101/661397 — immunology — Posted on 2019-06-13

1716 Gene-expression profiling of single cells from archival tissue with laser-capture microdissection and Smart-3SEQ

Foley, J. W.; Zhu, C.; Jolivet, P.; Zhu, S. X.; Lu, P.; Meaney, M. J.; West, R. B.

10.1101/207340 — genomics — Posted on 2019-06-13

1717 Evolutionary games with environmental feedbacks

Tilman, A. R.; Plotkin, J.; Akcay, E.

10.1101/493023 — evolutionary biology — Posted on 2019-06-13

1718 scRecover: Discriminating true and false zeros in single-cell RNA-seq data for imputation

Miao, Z.; Li, J.; Zhang, X.

10.1101/665323 — bioinformatics — Posted on 2019-06-13

1719 Premeiotic and meiotic failures lead to hybrid male sterility in the Anopheles gambiae complex

Liang, J.; Sharakhov, I. V.

10.1101/507889 — evolutionary biology — Posted on 2019-06-13

1720 PQLC2 signals lysosomal cationic amino acid abundance to the C9orf72 complex

Amick, J.; Tharkeshwar, A. K.; Talaia, G.; Ferguson, S. M.

10.1101/670034 — cell biology — Posted on 2019-06-13

1721 A Synthetic Peptide Encoded by a Random DNA Sequence Inhibits Discrete Red Light Responses

Folta, K. M. M.; Shuipys, T.; Carvalho, R. F.; Clancy, M. A.; Bao, Z.

10.1101/669564 — synthetic biology — Posted on 2019-06-13

1722 Familiarity increases processing speed in the visual system

Manahova, M. E.; Spaak, E.; de Lange, F.

10.1101/670489 — neuroscience — Posted on 2019-06-13

1723 Rare earth element (REE)-dependent growth of Pseudomonas putida KT2440 depends on the ABC-transporter PedA1A2BC and is influenced by iron availability

Wehrmann, M.; Berthelot, C.; Billard, P.; Klebensberger, J.

10.1101/670216 — microbiology — Posted on 2019-06-13

1724 GenEditID: an open-access platform for the high-throughput identification of CRISPR edited cell clones

Xue, Y.; Tung, Y.-C. L.; Siersbaek, R.; Pajon, A.; Chilamakuri, C. S. R.; Alvarez-Fernandez, R.; Bowers, R.; Carroll, J.; Eldridge, M.; Russell, A.; Merkle, F. T.

10.1101/657650 — genomics — Posted on 2019-06-13

1725 Stress Resets Transgenerational Small RNA Inheritance

Houri-Ze'evi, L.; Teichman, G.; Gingold, H.; Rechavi, O.

10.1101/669051 — genetics — Posted on 2019-06-13

1726 Ecological and dietary differences between Ugandan chimpanzee communities with possible implications on tool use

Berger, I.; Hobaiter, C.; Bell, M.; De Moor, D.; Gruber, T.

10.1101/670539 — ecology — Posted on 2019-06-13

1727 The phylogenetic range of bacterial and viral pathogens of vertebrates

Shaw, L. P.; Wang, A. D.; Dylus, D.; Meier, M.; Pogacnik, G.; Dessimoz, C.; Balloux, F.

10.1101/670315 — ecology — Posted on 2019-06-13

1728 Aerosolized TLR Agonists Suppress Acute Sendai Virus Lung Infection and Chronic Airway Disease in Mice

Goldblatt, D. L.; Flores, J. R.; Valverde Ha, G.; Jaramillo, A. M.; Tkachman, S.; Kirkpatrick, C. K.; Wali, S.; Hernandez, B.; Ost, D.; Scott, B.; Chen, J.; Evans, S. E.; Tuvim, M.; Dickey, B. F.

10.1101/668368 — immunology — Posted on 2019-06-13

1729 The lectin-specific activity of Toxoplasma gondii microneme proteins 1 and 4 binds Toll-like receptor 2 and 4 N-glycans to regulate innate immune priming

Sardinha-Silva, A.; Mendonca-Natividade, F. C.; Pinzan, C. F.; Lopes, C. D.; Costa, D. L.; Jacot, D.; Fernandes, F. F.; Zorzetto-Fernandes, A. L. V.; Gay, N. J.; Sher, A.; Jankovic, D.; Soldati-Favre, D.; Grigg, M. E.; Roque-Barreira, M. C.

10.1101/187690 — immunology — Posted on 2019-06-13

1730 A Comprehensive Genome-wide and Phenome-wide Examination of BMI and Obesity in a Northern Nevadan Cohort

Schlauch, K. A.; the 23andMe Research Team, ; Read, R. W.; Lombardi, V. C.; Elhanan, G.; Metcalf, W. J.; Slonim, A. D.; Grzymski, J. J.

10.1101/671123 — genetics — Posted on 2019-06-13

1731 Focus on the spectra that matter by clustering of quantification data in shotgun proteomics

The, M.; Käll, L.

10.1101/488015 — systems biology — Posted on 2019-06-13

1732 Dissociated cortical phase- and amplitude-coupling patterns in the human brain

Siems, M.; Siegel, M.

10.1101/485599 — neuroscience — Posted on 2019-06-13

1733 Affective Touch Dimensions: From Sensitivity to Metacognition

von Mohr, M.; Kirsch, L. P.; Loh, J. K.; Fotopoulou, A.

10.1101/669259 — neuroscience — Posted on 2019-06-13

1734 Distinct Contribution of DNA Methylation and Histone Acetylation to the Genomic Occupancy of Transcription Factors

Cusack, M.; King, H. W.; Spingardi, P.; Kessler, B.; Klose, R. J.; Kriaucionis, S.

10.1101/670307 — molecular biology — Posted on 2019-06-13

1735 Efficient depletion of ribosomal RNA for RNA sequencing in planarians

Kim, I. V.; Ross, E. J.; Dietrich, S.; Döring, K.; Sanchez Alvarado, A.; Kuhn, C. D.

10.1101/670604 — molecular biology — Posted on 2019-06-13

1736 In-vivo targeted tagging of RNA isolates cell specific transcriptional responses to environmental stimuli and identifies liver-to-adipose RNA transfer

Darr, J.; Lassi, M.; Tomar, A.; Gerlini, R.; Scheid, F.; Hrabe de Angelis, M.; Witting, M.; Teperino, R.

10.1101/670398 — molecular biology — Posted on 2019-06-13

1737 Dramatic HIV DNA degradation associated with spontaneous HIV suppression and disease-free outcome in a young seropositive woman following her infection

Colson, P.; Dhiver, C.; Tamalet, C.; Delerce, J.; Glazunova, O.; Gaudin, M.; Levasseur, A.; Raoult, D.

10.1101/651752 — microbiology — Posted on 2019-06-13

1738 Multifaceted genome-wide study identifies novel regulatory loci for body mass index in Indians

Giri, A. K.; Prasad, G.; Bandesh, K.; Parekatt, V.; Mahajan, A.; Banerjee, P.; Kauser, Y.; Chakraborty, S.; Rajashekar, D.; INDICO, ; Sharma, A.; Mathur, S. K.; Basu, A.; McCarthy, M. I.; Tandon, N.; Bharadwaj, D.

10.1101/670521 — genomics — Posted on 2019-06-13

1739 Genomic structure of Hstx2 modifier of Prdm9-dependent hybrid male sterility in mice

Lustyk, D.; Kinsky, S.; Ullrich, K. K.; Yancoskie, M.; Kasikova, L.; Gergelits, V.; Sedlacek, R.; Chan, Y. F.; Odenthal-Hesse, L.; Forejt, J.; Jansa, P.

10.1101/670422 — genetics — Posted on 2019-06-13

1740 Women with isolated fasting hyperglycemia in pregnancy are at a higher genetic risk for type 2 diabetes

Hughes, A. E.; Hayes, M. G.; Egan, A. M.; Patel, K. A.; Scholtens, D. M.; Lowe, L. P.; Lowe, W. L.; Dunne, F. P.; Hattersley, A. T.; Freathy, R. M.

10.1101/671057 — genetics — Posted on 2019-06-13

1741 Strength of species interactions determines biodiversity and stability in microbial communities

Ratzke, C.; Barrere, J.; Gore, J.

10.1101/671008 — ecology — Posted on 2019-06-13

1742 Cytological and genetic consequences for the progeny of a mitotic catastrophe provoked by Topoisomerase II deficiency.

Ramos-Perez, C.; Dominska, M.; Anaissi-Afonso, L.; Cazorla-Rivero, S.; Quevedo, O.; Lorenzo-Castrillejo, I.; Petes, T. D.; Machin, F.

10.1101/668954 — cell biology — Posted on 2019-06-13

1743 Long non-coding RNA GAS5 acts as proliferation brakes in CD133+ cells responsible for tumor recurrence

Sharma, N. S.; Gnamlin, P.; Durden, B. C.; Gupta, V. K.; Kesh, K.; Garrido, V.; Hadad, R.; Dudeja, V.; Saluja, A.; Banerjee, S.

10.1101/670968 — cancer biology — Posted on 2019-06-13

1744 ASFVdb: an integrative resource of African swine fever for genomics and proteomics analysis

Zhu, Z.; Meng, G.

10.1101/670109 — bioinformatics — Posted on 2019-06-13

1745 Anti-oxidant, anti-apoptotic, anti-hypoxic and anti-inflammatory conditions induced by PTY-2 against STZ-induced stress in islets

Srivastava, S.; Pandey, H.; Singh, S. K.; Tripathi, Y. B.

10.1101/670364 — pharmacology and toxicology — Posted on 2019-06-13

1746 The Endless Frontier? The Recent Upsurge of R&D Productivity in Pharmaceuticals

Pammolli, F.; Righetto, L.; Abrignani, S.; Pani, L.; Pelicci, P. G.; Rabosio, E.

10.1101/670471 — pharmacology and toxicology — Posted on 2019-06-13

1747 Mycobacteria fecal shedding in wild boars (Sus scrofa), South-eastern France

Fellag, M.; Drancourt, M.; Marie, J.-L.; Davoust, B.

10.1101/670166 — microbiology — Posted on 2019-06-13

1748 Potential of host serum protein biosignatures in the diagnosis of tuberculous meningitis in children

Manyelo, C. M.; Solomons, R. S.; Snyders, C. I.; Stanley, K.; Walzl, G.; Chegou, N. N.

10.1101/670323 — immunology — Posted on 2019-06-13

1749 Using Machine Learning to Facilitate Classification of Somatic Variants from Next-Generation Sequencing

Wu, C.; Zhao, X.; Welsh, M.; Costello, K.; Cao, K.; Abou Tayoun, A.; Li, M.; Sarmady, M.

10.1101/670687 — bioinformatics — Posted on 2019-06-13

1750 Sleep cycle of a fin whale based on reprocessing of old satellite observations

Viale, D.; Koechlin, L.; Viale, C.

10.1101/655886 — animal behavior and cognition — Posted on 2019-06-13

1751 PTY 2 As DPP-IV Inhibitor Prevents Intestinal Cell’s Apoptosis

Srivastava, S.; Pandey, H.; Singh, S. K.; Tripathi, Y. B.

10.1101/670430 — pharmacology and toxicology — Posted on 2019-06-13

1752 NMDA receptor in vasopressin 1b neurons is not required for short-term social memory, object memory or aggression.

Williams Avram, S.; Fastman, J.; Cymerblit-Sabba, A.; Smith, A.; Vincent, M.; Song, J.; Lee, H.-J.; Granovetter, M.; Lee, S. H.; Cilz, N.; Stackmann, M.; Chaturvedi, R.; Young, W. S.

10.1101/670893 — neuroscience — Posted on 2019-06-13

1753 Nucleotide-mediated allosteric regulation of bifunctional Rel enzymes

Tamman, H.; Van Nerom, K.; Takada, H.; Vandenberk, N.; Scholl, D.; Polikanov, Y.; Hofkens, J.; Talavera, A.; Hauryliuk, V.; Hendrix, J.; Garcia-Pino, A.

10.1101/670703 — molecular biology — Posted on 2019-06-13

1754 DREAM Interrupted: Severing MuvB from DREAM’s pocket protein impairs gene repression but not DREAM assembly on chromatin

Goetsch, P. D.; Strome, S.

10.1101/671024 — molecular biology — Posted on 2019-06-13

1755 SMCHD1 Promotes ATM-dependent DNA Damage Signaling and Repair of Uncapped Telomeres

Lingner, J.; Vancevska, A.; Pfeiffer, V.; Feretzaki, M.; Ahmed, W.

10.1101/669119 — molecular biology — Posted on 2019-06-13

1756 Mapping person-to-person variation in viral mutations that escape polyclonal serum targeting influenza hemagglutinin

Lee, J. M.; Eguia, R.; Zost, S. J.; Choudhary, S.; Wilson, P. C.; Bedford, T.; Stevens-Ayers, T.; Boeckh, M.; Hurt, A.; Lakdawala, S. S.; Hensley, S. E.; Bloom, J. D.

10.1101/670497 — microbiology — Posted on 2019-06-13

1757 Impact of Influent Carbon to Phosphorus Ratio on Performance and Phenotypic Dynamics in Enhanced Biological Phosphorus Removal (EBPR) System - Insights into Carbon Distribution, Intracellular Polymer Stoichiometry and Pathways Shifts

Majed, N.; Gu, A.

10.1101/671081 — microbiology — Posted on 2019-06-13

1758 Characterization of Streptococcus pneumoniae phage-like element SpnCI reveals an enhanced virulent phenotype in the acute invertebrate infection model Galleria mellonella

McCullor, K. A.; Rahman, M.; King, C. J.; McShan, W. M.

10.1101/670141 — microbiology — Posted on 2019-06-13

1759 Stepwise evolution and convergent recombination underlie the global dissemination of carbapenemase-producing Escherichia coli

Patino-Navarrete, R.; Rosinski-Chupin, I.; Cabanel, N.; Gauthier, L.; Takissian, J.; Madec, J.-Y.; Hamze, M.; Bonnin, R. A.; Naas, T.; Glaser, P.

10.1101/446195 — microbiology — Posted on 2019-06-13

1760 Host circadian rhythms are disrupted during malaria infection in parasite genotype-specific manners

Prior, K. F.; O'Donnell, A. J.; Rund, S. S.; Savill, N. J.; van der Veen, D. R.; Reece, S. E.

10.1101/670240 — ecology — Posted on 2019-06-13

1761 Effects of abnormal muscle forces on prenatal joint morphogenesis in mice

Sotiriou, V.; Rolfe, R.; Murphy, P.; Nowlan, N. C.

10.1101/669267 — developmental biology — Posted on 2019-06-13

1762 Soft Windowing Application to Improve Analysis of High-throughput Phenotyping Data

Haselimashhadi, H.; Mason, J. C.; Munoz-Fuentes, V.; Lopez-Gomez, F.; Babalola, K.; Acar, E. F.; Kumar, V.; White, J.; Flenniken, A. M.; King, R.; Straiton, E.; Seavitt, J. R.; Gaspero, A.; Garza, A.; Christianson, A. E.; Hsu, C.-W.; Reynolds, C. L.; Lanza, D. G.; Lorenzo, I.; Green, J. R.; Gallegos, J. J.; Bohat, R.; Samaco, R. C.; Veeraragavan, S.; Kim, J. K.; Miller, G.; Fuchs, H.; Garrett, L.; Becker, L.; Kang, Y.; Clary, D.; Cho, S.; Tamura, M.; Tanaka, N.; Soo, K. D.; Bezginov, A.; Bou About, G.; Champy, M.-F.; Vasseur, L.; Leblanc, S.; Meziane, H.; Selloum, M.; Reilly, P. T.; Spielmann,

10.1101/656678 — bioinformatics — Posted on 2019-06-13

1763 Metabolic pathway rerouting in Paraburkholderia rhizoxinica evolved long-overlooked derivatives of coenzyme F420

Braga, D.; Last, D.; Hasan, M.; Guo, H.; Leichnitz, D.; Uzum, Z.; Richter, I.; Schalk, F.; Beemelmanns, C.; Hertweck, C.; Lackner, G.

10.1101/670455 — biochemistry — Posted on 2019-06-13

1764 Evolution of C4 photosynthesis predicted by constraint-based modelling

Blaetke, M.-A.; Braeutigam, A.

10.1101/670547 — plant biology — Posted on 2019-06-13

1765 Stimulation augments spike sequence replay and memory consolidation during slow-wave sleep

Wei, Y.; Krishnan, G.; Marshall, L.; Martinetz, T.; BAZHENOV, M.

10.1101/670091 — neuroscience — Posted on 2019-06-13

1766 Altered m6A modification of specific cellular transcripts affects Flaviviridae infection

Gokhale, N. S.; McIntyre, A. B. R.; Mattocks, M. D.; Holley, C. L.; Lazear, H. M.; Mason, C. E.; Horner, S. M.

10.1101/670984 — molecular biology — Posted on 2019-06-13

1767 Evaluating intraspecific genetic diversity of a fish population using environmental DNA: An approach to distinguish true haplotypes from erroneous sequences

Tsuji, S.; Miya, M.; Ushio, M.; Sato, H.; Minamoto, T.; Yamanaka, H.

10.1101/429993 — molecular biology — Posted on 2019-06-13

1768 Microbial Nitrogen Metabolism in Chloraminated Drinking Water Reservoirs

Potgieter, S. C.; Dai, Z.; Venter, S. N.; Sigudu, M.; Pinto, A. J.

10.1101/655316 — microbiology — Posted on 2019-06-13

1769 Limited thermal plasticity and geographic divergence in the ovipositor of Drosophila suzukii

Varon Gonzalez, C.; Fraimout, A.; Delapre, A.; Debat, V.; Cornette, R.

10.1101/670356 — developmental biology — Posted on 2019-06-13

1770 A TetR-family protein activates transcription from a new promoter motif associated with essential genes for autotrophic growth in acetogens

de Souza Pinto Lemgruber, R.; Valgepea, K.; Gonzalez Garcia, R. A.; de Bakker, C.; Palfreyman, R. W.; Tappel, R.; Kopke, M.; Simpson, S. D.; Nielsen, L. K.; Marcellin, E.

10.1101/668756 — bioengineering — Posted on 2019-06-13

1771 An Optimized Screen Reduces the Number of GA Transporters and provides Insights into NPF Substrate Determinants

Wulff, N.; Asschenfeldt Ernst, H.; Egevang Jorgensen, M.; Lambertz, S.; Maierhofer, T.; Mussa Belew, Z.; Crocoll, C.; Saddik Motawia, M.; Geiger, D.; Jorgensen, F. S.; Mirza, O.; Nour-Eldin, H. H.

10.1101/670174 — biochemistry — Posted on 2019-06-13

1772 DEFORMATION BASED MORPHOMETRY STUDY OF LONGITUDINAL MRI CHANGES IN BEHAVIORAL VARIANT FRONTOTEMPORAL DEMENTIA

Manera, A. L.; Dadar, M.; Collins, D. L.; Ducharme, S.

10.1101/670646 — neuroscience — Posted on 2019-06-13

1773 Shared and Distinct Dysfunction of Dynamic Connectivity Networks across Schizophrenia, Bipolar Disorder and Major Depression Disorder

Li, C.; Xu, K.; Wei, Y.; Duan, J.; Han, S.; Feng, R.; Chen, Y.; Zhang, L.; Jiang, X.; Wei, S.; Chen, H.; Tang, Y.; Wang, F.

10.1101/670562 — neuroscience — Posted on 2019-06-13

1774 Divergent neuronal DNA methylation patterns across human cortical development: Critical periods and a unique role of CpH methylation

Price, A. J.; Collado-Torres, L.; Ivanov, N. A.; Xia, W.; Burke, E. E.; Shin, J. H.; Tao, R.; Ma, L.; Jia, Y.; Hyde, T. M.; Kleinman, J. E.; Weinberger, D. R.; Jaffe, A. E.

10.1101/428391 — neuroscience — Posted on 2019-06-13

1775 Conjunctival microbiome-host responses are associated with impaired epithelial cell health in both early and late stages of trachoma

Pickering, H.; Palmer, C. D.; Houghton, J.; Makalo, P.; Joof, H.; Derrick, T.; Goncalves, A.; Mabey, D. C.; Bailey, R. L.; Burton, M. J.; Roberts, C. h.; Burr, S. E.; Holland, M. J.

10.1101/670711 — microbiology — Posted on 2019-06-13

1776 Apolipoprotein L9 interacts with LC3/GABARAP and is a microtubule-associated protein with a widespread subcellular distribution

Thekkinghat, A. A.; Yadav, K. K.; Rangarajan, P. N.

10.1101/671065 — cell biology — Posted on 2019-06-13

1777 Signaling activated by nucleolar localised Notch4 Intracellular Domain underlies protection from genomic damage

Saini, N.; Sarin, A.

10.1101/670588 — cancer biology — Posted on 2019-06-13

1778 Context-dependent activation of SIRT3 is necessary for anchorage-independent survival and metastasis of ovarian cancer cells.

Kim, Y. S.; Gupta-Vallur, P.; Jones, V. M.; Worley, B. L.; Shimko, S.; Shin, D.-H.; Crawford, L. C.; Chen, C.-W.; Aird, K. M.; Abraham, T.; Shepherd, T. G.; Warrick, J. I.; Lee, N. Y.; Phaeton, R.; Mythreye, K.; Hempel, N.

10.1101/670778 — cancer biology — Posted on 2019-06-13

1779 Co-localization and confinement of ecto-nucleotidases modulate extracellular adenosine nucleotide pools

Rahmaninejad, H.; Pace, T.; Bhatt, S.; Sun, B.; Kekenes-Huskey, P. M.

10.1101/670570 — biophysics — Posted on 2019-06-13

1780 Phosphorylation of Ser111 in Rab8a modulates Rabin8 dependent activation by perturbation of side chain interaction networks

Pourjafar-Dehkordi, D.; Vieweg, S.; Itzen, A.; Zacharias, M.

10.1101/670729 — biophysics — Posted on 2019-06-13

1781 Carbohydrate and PepO control bimodality in competence development by Streptococcus mutans

Underhill, S. A. M.; Shields, R. C.; Burne, R. A.; Hagen, S. J.

10.1101/670752 — biophysics — Posted on 2019-06-13

1782 Microplastic ingestion by a herring Opisthonema sp., in the Pacific coast of Costa Rica

Bermudez-Guzman, L.; Alpizar-Villalobos, C.; Gatgens-Garcia, J.; Jimenez-Huezo, G.; Rodriguez-Arias, M.; Molina-Urena, H.; Villalobos, J.; Paniagua Barrantes, S. A.; Vega-Baudrit, J. R.; Rojas-Jimenez, K.

10.1101/670679 — zoology — Posted on 2019-06-13

1783 Bundle-sheath cells: are leaf \"water valves\" controlled by their H+-ATPase: \"open\" by xylem acidification, \"closed\" by xylem alkalinization

Grunwald, Y.; Wigoda, N.; Yaaran, A.; Sade, N.; Torne, T.; Gosa, S. C.; Moran, N.; Moshelion, M.

10.1101/234286 — plant biology — Posted on 2019-06-13

1784 Biphasic impact of prenatal inflammation and macrophage depletion on the wiring of neocortical inhibitory circuits

Thion, M. S.; Mosser, C.-A.; Ferezou, I.; Grisel, P.; Baptista, S.; Low, D.; Ginhoux, F.; Garel, S.; Audinat, E.

10.1101/669002 — neuroscience — Posted on 2019-06-13

1785 Tetrodotoxin-sensitive sodium channels mediate action potential firing and excitability in menthol-sensitive Vglut3-lineage sensory neurons

Griffith, T. N.; Docter, T. A.; Lumpkin, E. A.

10.1101/670620 — neuroscience — Posted on 2019-06-13

1786 Olsenella lakotia SW165 sp. nov., an acetate producing obligate anaerobe with a GC rich genome

Wongkuna, S.; Ghimire, S.; Kumar, R.; Antony, L.; Chankhamhaengdecha, S.; Janvilisri, T.; Scaria, J.

10.1101/670927 — microbiology — Posted on 2019-06-13

1787 Phylogenetic and structural diversity of aromatically dense pili from environmental metagenomes

Bray, M. S.; Wu, J.; Padilla, C. C.; Stewart, F. J.; Fowle, D. A.; Henny, C.; Simister, R. L.; Thompson, K. J.; Crowe, S. A.; Glass, J. B.

10.1101/668343 — microbiology — Posted on 2019-06-13

1788 Influence of genetic interactions on polygenic prediction

Dai, Z.; Long, N.; Huang, W.

10.1101/667162 — genetics — Posted on 2019-06-13

1789 Single Cell Analysis Reveals Immune Cell-Adipocyte Crosstalk Regulating the Transcription of Thermogenic Adipocytes

Rajbhandari, P.; Arneson, D.; Feng, A.-C.; Ahn, I. S.; Diamante, G.; Zaghari, N.; Thomas, B.; Vergnes, L.; Lee, S.; Reue, K.; Smale, S.; Yang, X.; Tontonoz, P.

10.1101/669853 — cell biology — Posted on 2019-06-13

1790 In vivo screen identifies LXR agonism potentiates sorafenib killing of hepatocellular carcinoma

Preziosi, M. E.; Zahm, A. M.; Vasquez-Salgado, A.; Ackerman, D.; Gade, T.; Kaestner, K. H.; Wangensteen, K. J.

10.1101/668350 — cancer biology — Posted on 2019-06-13

1791 DeepKinZero: Zero-Shot Learning for Predicting Kinase-Phosphosite Associations Involving Understudied Kinases

Deznabi, I.; Arabaci, B.; Koyuturk, M.; Tastan, O.

10.1101/670638 — bioinformatics — Posted on 2019-06-13

1792 Batch Effect Correction of RNA-seq Data through Sample Distance Matrix Adjustment

Fei, T.; Yu, T.

10.1101/669739 — bioinformatics — Posted on 2019-06-13

1793 Patch-Clamp Recording of K+ Current from Lacrimal Gland Duct Cells

Haarsma, L. D.; Ubels, J. L.

10.1101/670653 — physiology — Posted on 2019-06-13

1794 Modified covariance beamformer for solving MEG inverse problem in the environment with correlated sources

Kuznetsova, A.; Nurislamova, Y.; Ossadtchi, A.

10.1101/668814 — neuroscience — Posted on 2019-06-13

1795 Immune, Autonomic, and Endocrine Dysregulation in Autism and Ehlers-Danlos Syndrome/Hypermobility Spectrum Disorders Versus Unaffected Controls

Casanova, E. L.; Sharp, J. L.; Edelson, S. M.; Kelly, D. P.; Sokhadze, E. M.; Casanova, M. F.

10.1101/670661 — neuroscience — Posted on 2019-06-13

1796 Inhibition of Histone deacetylase 1 (HDAC1) and HDAC2 enhances CRISPR/Cas9 genome editing

Liu, B.; Chen, S.; Rose, A. L.; Chen, D.; Cao, F.; Kiemel, D.; Aissi, M.; Dekker, F.; Haisma, H.

10.1101/670554 — genomics — Posted on 2019-06-13

1797 Natural genetic variation screen in Drosophila identifies Wnt signaling, mitochondrial metabolism, and redox homeostasis genes as modifiers of apoptosis

Palu, R. A. S.; Ong, E.; Stevens, K.; Chung, S.; Owings, K. G.; Goodman, A. G.; Chow, C. Y.

10.1101/670075 — genetics — Posted on 2019-06-13

1798 Cellular deconvolution of GTEx tissues powers eQTL studies to discover thousands of novel disease and cell-type associated regulatory variants

Donovan, M. K. R.; D'Antonio-Chronowska, A.; D'Antonio, M.; Frazer, K. A.

10.1101/671040 — genetics — Posted on 2019-06-13

1799 Parthenogenesis as a solution to hybrid sterility: the mechanistic basis of meiotic distortions in clonal and sterile hybrids

Dedukh, D.; Majtanova, Z.; Marta, A.; Psenicka, M.; Kotusz, J.; Klima, J.; Juchno, D.; Boron, A.; Janko, K.

10.1101/663112 — evolutionary biology — Posted on 2019-06-13

1800 Protein structure from experimental evolution

Stiffler, M. A.; Poelwijk, F. J.; Brock, K. P.; Stein, R. R.; Teyra, J.; Sidhu, S. S.; Marks, D. S.; Gauthier, N. P.; Sander, C.

10.1101/667790 — evolutionary biology — Posted on 2019-06-13

1801 Interferometric Fluorescent Cross Correlation Spectroscopy

Saha, I.; Saffarian, S.

10.1101/671016 — biophysics — Posted on 2019-06-13

1802 lncRNAKB: A comprehensive knowledgebase of long non-coding RNAs

Seifuddin, F.; Singh, K.; Suresh, A.; Chen, Y.-C.; Chaitankar, V.; Tunc, I.; Ruan, X.; Li, P.; Chen, Y.; Cao, H.; Lee, R. S.; Goes, F. S.; Zandi, P. P.; Jafri, M. S.; Pirooznia, M.

10.1101/669994 — bioinformatics — Posted on 2019-06-13

1803 Humanization of yeast genes with multiple human orthologs reveals principles of functional divergence between paralogs

Laurent, J. M.; Garge, R. K.; Teufel, A. I.; Wilke, C. O.; Kachroo, A. H.; Marcotte, E. M.

10.1101/668335 — systems biology — Posted on 2019-06-13

1804 A proteogenomic resource enabling integrated analysis of Listeria genotype-proteotype-phenotype relationships

Varadarajan, A. R.; Pavlou, M.; Goetze, S.; Grosboillot, V.; Shen, Y.; Loessner, M. J.; Ahrens, C. H.; Wollscheid, B.

10.1101/668053 — systems biology — Posted on 2019-06-13

1805 Bioactivity of curcumin on the cytochrome P450 enzymes of the steroidogenic pathways

Castano, P. R.; Pandey, A. V.

10.1101/669440 — pharmacology and toxicology — Posted on 2019-06-13

1806 Effects of the estrous cycle and ovarian hormones on cue-triggered motivation and intrinsic excitability of medium spiny neurons in the Nucleus Accumbens of female rats

Alonso-Caraballo, Y.; Ferrario, C.

10.1101/669804 — neuroscience — Posted on 2019-06-13

1807 Early-Stage Ocular Hypertension Alters Retinal Ganglion Cell Synaptic Transmission in the Visual Thalamus

Bhandari, A.; Smith, J. C.; Zhang, Y.; Reid, L.; Goeser, T.; Fan, S.; Ghate, D.; Van Hook, M. J.

10.1101/669135 — neuroscience — Posted on 2019-06-13

1808 Compensating for a shifting world: A quantitative comparison of the reference frame of visual and auditory signals across three multimodal brain areas

Caruso, V.; Pages, D.; Sommer, M.; Groh, J.

10.1101/669333 — neuroscience — Posted on 2019-06-13

1809 Monosynaptic tracing maps brain-wide afferent oligodendrocyte precursor cell connectivity

Mount, C. W.; Yalcin, B.; Cunliffe-Koehler, K.; Monje, M.

10.1101/669572 — neuroscience — Posted on 2019-06-13

1810 Machine learning identifies large-scale reward-related activity modulated by dopaminergic enhancement in major depression

Liu, Y.; Admon, R.; Belleau, E. L.; Kaiser, R. H.; Clegg, R.; Beltzer, M.; Goer, F.; Vitaliano, G.; Ahammad, P.; Pizzagalli, D.

10.1101/669887 — neuroscience — Posted on 2019-06-13

1811 Adaptability and efficiency in neural coding

Mlynarski, W.; Hermundstad, A. M.

10.1101/669200 — neuroscience — Posted on 2019-06-13

1812 The glucocorticoid receptor in the nucleus accumbens plays a crucial role in social rank attainment in rodents

Papilloud, A.; Weger, M.; Bacq, A.; Zalachoras, I.; Hollis, F.; Larrieu, T.; Battivelli, D.; Grosse, J.; Zanoletti, O.; Parnaudeau, S.; Tronche, F.; Sandi, C.

10.1101/668897 — neuroscience — Posted on 2019-06-13

1813 Spectral Hallmark of Auditory-Tactile Interactions in Somatosensory Cortex

Zhang, M.; Kwon, S. E.; Ben-Johny, M.; O'Connor, D. H.; Issa, J. B.

10.1101/668319 — neuroscience — Posted on 2019-06-13

1814 Reinforcement learning as an intermediate phenotype in psychosis? Deficits sensitive to illness stage but not associated with polygenic risk of schizophrenia in the general population

Montagnese, M.; Knolle, F.; Haarsma, J.; Griffin, J.; Richards, A.; Vertes, P.; Kiddle, B.; Fletcher, P.; Jones, P.; Owen, M.; Fonagy, P.; Bullmore, E.; Dolan, R.; NSPN Consortium, ; Moutoussis, M.; Goodyer, I.; Murray, G. K.

10.1101/668939 — neuroscience — Posted on 2019-06-13

1815 Approximate Bayesian Inference for a Mechanistic Model of Vesicle Release at a Ribbon Synapse

Schroeder, C.; James, B.; Lagnado, L.; Berens, P.

10.1101/669218 — neuroscience — Posted on 2019-06-13

1816 Concise whole blood transcriptional signatures for incipient tuberculosis: A systematic review and patient-level pooled meta-analysis

Gupta, R. K.; Turner, C. T.; Venturini, C.; Esmail, H.; Rangaka, M. X.; Copas, A.; Lipman, M.; Abubakar, I.; Noursadeghi, M.

10.1101/668137 — microbiology — Posted on 2019-06-13

1817 TRIM69 inhibits Vesicular Stomatitis Indiana Virus (VSIV)

Rihn, S. J.; Aziz, M. A.; Stewart, D. G.; Hughes, J.; Turnbull, M. L.; Varela, M.; Sugrue, E.; Herd, C. S.; Stanifer, M.; Sinkins, S. P.; Palmarini, M.; Wilson, S. J.

10.1101/669176 — microbiology — Posted on 2019-06-13

1818 Pseudomonas aeruginosa ethanol oxidation by AdhA in low oxygen environments

Crocker, A. W.; Harty, C. E.; Hammond, J. H.; Willger, S. D.; Salazar, P.; Jacobs, N. J.; Hogan, D. A.

10.1101/670117 — microbiology — Posted on 2019-06-13

1819 Osteopontin promotes survival of intestinal intraepithelial lymphocytes and protect against colitis

Nazmi, A.; Greer, M.; Hoek, K. L.; Piazuelo, M. B.; Weitkamp, J.-H.; Olivares-Villagomez, D.

10.1101/669432 — immunology — Posted on 2019-06-13

1820 Chloris distichophylla Lag. (Poaceae) as stink bug (Pentatomidae) shelter in soybean and corn off-season in southern Brazil

Engel, E.; Pasini, M. P. B.; Horz, D. C.; Bortolotto, R. P.

10.1101/670943 — ecology — Posted on 2019-06-13

1821 Coevolution-based prediction of protein-protein interactions in polyketide biosynthetic assembly lines

Wang, Y.; Correa Marrero, M.; Medema, M. H.; van Dijk, A. D. J.

10.1101/669291 — bioinformatics — Posted on 2019-06-13

1822 Deamidation disrupts native and transient contacts to weaken the interaction between UBC13 and RING-finger E3 ligases

Mohanty, P.; Rashmi, ; Habibullah, B. I.; G S, A.; Das, R.

10.1101/665992 — biochemistry — Posted on 2019-06-13

1823 Sophisticated suction organs from insects living in raging torrents: Morphology and ultrastructure of the attachment devices of net-winged midge larvae (Diptera: Blephariceridae)

Kang, V.; Johnston, R.; van de Kamp, T.; Farago, T.; Federle, W.

10.1101/666537 — zoology — Posted on 2019-06-13

1824 Acid exposure impairs mucus secretion and disrupts mucus transport in neonatal piglet airways

Liao, Y.-S. J.; Kuan, S.-P.; Guevara, M. V.; Collins, E. N.; Atanasova, K. R.; Dadural, J.; Vogt, K.; Schurmann, V.; Reznikov, L. R.

10.1101/669879 — physiology — Posted on 2019-06-13

1825 The thalamic basis of outcome and cognitive impairment in traumatic brain injury

Lutkenhoff, E. S.; Wright, M. J.; Shrestha, V.; Real, C.; McArthur, D. L.; Buitrago-Blanco, M.; Vespa, P. M.; Monti, M. M.

10.1101/669390 — neuroscience — Posted on 2019-06-13

1826 Differential Effects of Prostaglandin E2 Production and Signaling through the Prostaglandin EP3 Receptor on Human Beta-cell Compensation

Truchan, N. A.; Sandhu, H.; Fenske, R. J.; Buchanan, R.; Moeller, J.; Reuter, A.; Harrington, J.; Kimple, M. E.

10.1101/670000 — molecular biology — Posted on 2019-06-13

1827 Reconstruction of the carbohydrate 6-O sulfotransferase gene family evolution in vertebrates reveals novel member, CHST16, lost in amniotes

Ocampo Daza, D.; Haitina, T.

10.1101/667535 — genomics — Posted on 2019-06-13

1828 Oscillatory Viscoelastic Microfluidics for Efficient Focusing and Separation of Nanoscale Species

Asghari, M.; Cao, X.; Mateescu, B.; van Leeuwen, D.; Stavrakis, S.; deMello, A.

10.1101/668301 — bioengineering — Posted on 2019-06-13

1829 Effects of arm weight support on neuromuscular activation during reaching in chronic stroke patients

Runnalls, K. D.; Ortega-Auriol, P.; McMorland, A. J.; Anson, G.; Byblow, W. D.

10.1101/668046 — neuroscience — Posted on 2019-06-13

1830 Evolution of satellite plasmids can stabilize the maintenance of newly acquired accessory genes in bacteria

Zhang, X.; Deatherage, D. E.; Zheng, H.; Georgoulis, S. J.; Barrick, J. E.

10.1101/669465 — microbiology — Posted on 2019-06-13

1831 Phage-centric ecological interactions in aquatic ecosystems revealed through ultra-deep metagenomics

Kavagutti, V. S.; Andrei, A.-S.; Mehrshad, M.; Salcher, M.; Ghai, R.

10.1101/670067 — microbiology — Posted on 2019-06-13

1832 A Novel PHOX/CD38/MCOLN1/TFEB Axis Important For Macrophage Activation During Bacterial Phagocytosis

Najibi, M.; Moreau, J. A.; Honwad, H. H.; Irazoqui, J.

10.1101/669325 — immunology — Posted on 2019-06-13

1833 Activation of a nerve injury transcriptional signature in airway-innervating sensory neurons after lipopolysaccharide induced lung inflammation

Kaelberer, M. M.; Caceres, A. I.; Jordt, S.-E.

10.1101/669374 — genetics — Posted on 2019-06-13

1834 Experimental evolution for niche breadth in bacteriophage T4 highlights the importance of structural genes

Pham, J. Y.; Ogbunugafor, C. B.; Nguyen Ba, A. N.; Hartl, D. L.

10.1101/669770 — evolutionary biology — Posted on 2019-06-13

1835 Temporal stability of fMRI in medetomidine-anesthetized rats

Sirmpilatze, N.; Baudewig, J.; Boretius, S.

10.1101/667659 — neuroscience — Posted on 2019-06-13

1836 Resting state functional connectivity in early post-anesthesia recovery is characterized by globally reduced anticorrelations

Nir, T.; Jacob, Y.; Huang, K.-H.; Schwartz, A. E.; Brallier, J. W.; Ahn, H.; Kundu, P.; Tang, C. Y.; Delman, B. N.; McCormick, P. J.; Sano, M.; Deiner, S. G.; Baxter, M. G.; Mincer, J. S.

10.1101/669457 — neuroscience — Posted on 2019-06-13

1837 Human Umbilical Cord blood monocytes, but not adult blood monocytes, rescue brain cells from hypoxic-ischemic injury: Mechanistic and therapeutic implications

Saha, A.; Patel, S.; Xu, L.; Scotland, P.; Schwartzman, J.; Filiano, A. J.; Kurtzberg, J.; Balber, A. E.

10.1101/670794 — neuroscience — Posted on 2019-06-13

1838 The role of transporters and synaptic cleft morphology in glutamate and GABA homeostasis and their effect on neuronal function

Ullah, G.

10.1101/670844 — neuroscience — Posted on 2019-06-13

1839 Gcn5 and Ubp8 dependent ubiquitylation affects glycolysis in yeast

Filetici, P.; De Palma, A.; Fanelli, G.; Cretella, E.; De Luca, V.; Panzeri, V.; Roffia, V.; Saliola, M.; Mauri, P.

10.1101/670885 — molecular biology — Posted on 2019-06-13

1840 Antibiotic resistant bacteria and commensal fungi are common and conserved in the mosquito microbiome

Hyde, J.; Gorham, C.; Brackney, D. E.; Steven, B.

10.1101/670802 — microbiology — Posted on 2019-06-13

1841 A reduced Gompertz model for predicting tumor age using a population approach

Vaghi, C.; Rodallec, A.; Fanciullino, R.; Ciccolini, J.; Mochel, J.; Mastri, M.; Poignard, C.; Ebos, J. M.; Benzekry, S.

10.1101/670869 — cancer biology — Posted on 2019-06-13

1842 Identifying conserved molecular targets required for cell migration of glioblastoma cancer stem cells

Volovetz, J.; Berezovsky, A. D.; Alban, T. J.; Chen, Y.; Aranjuez, G.; Burtscher, A.; Shibuya, K.; Silver, D. J.; Peterson, J.; Manor, D.; McDonald, J.; Lathia, J.

10.1101/669036 — cancer biology — Posted on 2019-06-13

1843 Robust summarization and inference in proteome-wide label-free quantification

Sticker, A.; Goeminne, L.; Martens, L.; Clement, L.

10.1101/668863 — bioinformatics — Posted on 2019-06-13

1844 Phylogenetic correlations can suffice to infer protein partners from sequences

Marmier, G.; Weigt, M.; Bitbol, A.-F.

10.1101/670877 — bioinformatics — Posted on 2019-06-13

1845 A1 Adenosine Receptor Signaling Reduces Streptococcus pneumoniae Adherence to Pulmonary Epithelial Cells by Targeting Expression of Platelet-Activating Factor Receptor

Bhalla, M.; Hui Yeoh, J.; Lamneck, C.; Herring, S. E.; Tchalla, E. Y. I.; Leong, J. M.; Bou Ghanem, E.

10.1101/670901 — immunology — Posted on 2019-06-13

1846 Differential scanning fluorimetric analysis of the amino-acid binding to taste receptor using a model receptor protein, the ligand-binding domain of fish T1r2a/T1r3

Yoshida, T.; Yasui, N.; Kusakabe, Y.; Ito, C.; Akamatsu, M.; Yamashita, A.

10.1101/670828 — biochemistry — Posted on 2019-06-13

1847 Study of the AMP-activated protein kinase role in energy metabolism changes during the postmortem aging of yak longissimus lumborum

Yang, Y.; Han, L.; Yu, Q.; Gao, Y.; Song, R.

10.1101/670851 — biochemistry — Posted on 2019-06-13

1848 Effect of sampling frequency on fractal fluctuations during treadmill walking

Marmelat, V.; Duncan, A.; Meltz, S.

10.1101/670810 — bioengineering — Posted on 2019-06-13

1849 Cortisol levels adter cold exposure are independent of adrenocorticotropic hormone stimulation

Shida, A. M.; Ikeda, T.; Tani, N.; Morioka, F.; Aoki, Y.; Ikeda, K.; Watanabe, M.; Ishikawa, T.

10.1101/670836 — biochemistry — Posted on 2019-06-13

1850 Chemical precision glyco-mutagenesis by glycosyltransferase engineering in living cells

Schumann, B.; Malaker, S. A.; Wisnovsky, S. P.; Debets, M. F.; Agbay, A. J.; Fernandez, D.; Wagner, L. J. S.; Lin, L.; Choi, J.; Fox, D. M.; Peh, J.; Gray, M. A.; Pedram, K.; Kohler, J. J.; Mrksich, M.; Bertozzi, C. R.

10.1101/669861 — synthetic biology — Posted on 2019-06-13

1851 Insulin-like growth factor 1 receptor signaling in tenocytes is required for adult tendon growth

Disser, N. P.; Sugg, K. B.; Talarek, J. R.; Sarver, D. C.; Rourke, B. J.; Mendias, C. L.

10.1101/670026 — physiology — Posted on 2019-06-13

1852 Kv4.1, a key ion channel for low frequency firing of dentate granule cells, is crucial for pattern separation

Kim, K.-R.; Lee, S. Y.; Kim, Y.; Kwon, M. J.; Jeong, H.-J.; Lee, S.; Suh, Y. H.; Kang, J.-S.; Cho, H.; Lee, S.-H.; Kim, M.-H.; Ho, W.-K.

10.1101/670018 — neuroscience — Posted on 2019-06-13

1853 Natural variants in C. elegans atg-5 3’UTR uncover divergent effects of autophagy on polyglutamine aggregation in different tissues

Alexander-Floyd, J.; Haroon, S.; Ying, M.; Entezari, A. A.; Jaeger, C.; Vermulst, M.; Gidalevitz, T.

10.1101/670042 — genetics — Posted on 2019-06-13

1854 The tapeworm interactome: inferring confidence scored protein-protein interactions from the proteome of Hymenolepis microstoma

James, K.; Olson, P.

10.1101/668988 — bioinformatics — Posted on 2019-06-13

1855 Toxoplasma gondii bradyzoites induce transcriptional changes to host cells and prevent IFNγ-mediated cell death

Tonkin, C. J.; Seizova, S.; Garnham, A.; Coffey, M.; Whitehead, L.; Rogers, K.

10.1101/669689 — microbiology — Posted on 2019-06-13

1856 Telophase correction refines division orientation in stratified epithelia

Lough, K. J.; Byrd, K. M.; Descovich, C. P.; Spitzer, D. C.; Bergman, A. J.; Beaudoin, G. M.; Reichardt, L. F.; Williams, S. E.

10.1101/668244 — cell biology — Posted on 2019-06-13

1857 Evaluation of Open Hollow Hydroxyapatite Microsphere on Bone Regeneration in Rat Calvarial Defects

Shen, Y.; Rahaman, M. N.; Liu, Y.; Huang, Y.-W.

10.1101/669598 — bioengineering — Posted on 2019-06-13

1858 Dissociating refreshing and elaboration and their impacts on memory

Bartsch, L. M.; Loaiza, V. M.; Jäncke, L.; Oberauer, K.; Lewis-Peacock, J.

10.1101/423277 — neuroscience — Posted on 2019-06-13

1859 Pseudomonas aeruginosa increases the sensitivity of biofilm-grown Staphylococcus aureus to membrane-targeting antiseptics and antibiotics

Orazi, G.; Ruoff, K. L.; O'Toole, G.

10.1101/668780 — microbiology — Posted on 2019-06-13

1860 Matrix metalloproteinase 1 modulates invasive behavior of tracheal branches during ingression into Drosophila flight muscles

Sauerwald, J.; Backer, W.; Matzat, T.; Schnorrer, F.; Luschnig, S.

10.1101/669028 — cell biology — Posted on 2019-06-13

1861 β-blockers augment L-type Ca2+ channel activity by target-selective spatially restricted β2AR-cAMP-PKA signaling in neurons

Shen, A.; Chen, D.; Kaur, M.; Xu, B.; Shi, Q.; Martinez, J.; Man, K. N. M.; Hell, J. W.; Navedo, M. F.; Yu, X.; Xiang, Y.

10.1101/668913 — cell biology — Posted on 2019-06-13

1862 Transcriptome analysis of Xanthomonas oryzae pv. oryzicola exposed to H2O2 reveals horizontal gene transfer contributes to its oxidative stress response

Rao, Y.; Fang, Y.; Zhu, B.; Wang, H.; Liu, X.

10.1101/669614 — microbiology — Posted on 2019-06-13

1863 One year prevalence of psychotic disorders among first treatment contact patients at the National Psychiatric referral and teaching hospital in Uganda

Mwesiga, E. K.; Nakasujja, N.; Nakku, J.; Nanyonga, A.; Gumikiriza, J. L.; Bangirana, P.; Akena, D.; Musisi, S.

10.1101/669606 — epidemiology — Posted on 2019-06-13

1864 BAMscale: quantification of DNA sequencing peaks and generation of scaled coverage tracks

Pongor, L. S.; Gross, J. M.; Vera Alvarez, R.; Murai, J.; Jang, S.-M.; Zhang, H.; Redon, C.; Fu, H.; Huang, S.-Y.; Thakur, B.; Baris, A.; Marino-Ramirez, L.; Landsman, D.; Mirit, A. I.; Pommier, Y.

10.1101/669275 — bioinformatics — Posted on 2019-06-13

1865 Synaptic mechanisms underlying the network state-dependent recruitment of VIP-expressing interneuron-specific interneurons in the CA1 hippocampus

Luo, X.; Guet-McCreight, A.; Francavilla, R.; Villette, V.; Marino, B.; Chamberland, S.; Skinner, F. K.; Topolnik, L.

10.1101/433136 — neuroscience — Posted on 2019-06-13

1866 Tracing Autism Traits in Large Multiplex Families to Identify Endophenotypes of the Broader Autism Phenotype

Trevis, K. J.; Brown, N. J.; Green, C.; Lockhart, P.; Hickey, P.; Fanjul-Fernandez, M.; Bromhead, C. J.; Desai, T.; Vick, T.; Gillies, G.; Mountford, H.; Fitzpatrick, E.; Gordon, L.; Hewson, P.; Anderson, V.; Delatycki, M.; Scheffer, I. E.; Wilson, S. J.

10.1101/659722 — neuroscience — Posted on 2019-06-13

1867 An improved pig reference genome sequence to enable pig genetics and genomics research

Warr, A.; Affara, N.; Aken, B.; Beiki, H.; Bickhart, D. M.; Billis, K.; Chow, W.; Eory, L.; Finlayson, H. A.; Flicek, P.; Giron, C. G.; Griffin, D. K.; Hall, R.; Hannum, G.; Hourlier, T.; Howe, K.; Hume, D. A.; Izuogu, O.; Kim, K.; Koren, S.; Liu, H.; Manchanda, N.; Martin, F. J.; Nonneman, D. J.; O'Connor, R. E.; Phillippy, A. M.; Rohrer, G. A.; Rosen, B. D.; Rund, L. A.; Sargent, C. A.; Schook, L. B.; Schroeder, S. G.; Schwartz, A. S.; Skinner, B. M.; Talbot, R.; Tseng, E.; Tuggle, C. K.; Watson, M.; Smith, T. P.; Archibald, A. L.

10.1101/668921 — genomics — Posted on 2019-06-13

1868 Environmental light is required for maintenance of long-term memory in Drosophila

Inami, S.; Sato, S.; Kondo, S.; Tanimoto, H.; Kitamoto, T.; Sakai, T.

10.1101/592667 — neuroscience — Posted on 2019-06-13

1869 Next generation sequencing to investigate genomic diversity in Caryophyllales

Pucker, B.; Feng, T.; Brockington, S.

10.1101/646133 — genomics — Posted on 2019-06-13

1870 Optimization of insect odorant receptor trafficking and functional expression via transient transfection in HEK293 cells

Miazzi, F.; Hoyer, C.; Sachse, S.; Knaden, M.; Wicher, D.; Hansson, B. S.; Lavista-Llanos, S.

10.1101/669127 — zoology — Posted on 2019-06-12

1871 Mechanical properties of plasma membrane vesicles correlate with lipid order and viscosity and depend on cell density

Steinkuehler, J.; Sezgin, E.; Urbancic, I.; Eggeling, C.; Dimova, R.

10.1101/669085 — biophysics — Posted on 2019-06-12

1872 The inter-dimeric interface controls function and stability of Ureaplasma urealiticum methionine S-adenosyltransferase

Kleiner, D.; Shmulevich, F.; Zarivach, R.; Shahar, A.; Sharon, M.; Ben-Nissan, G.; Bershtein, S.

10.1101/669069 — biochemistry — Posted on 2019-06-12

1873 Full-featured, real-time database searching platform enables fast and accurate multiplexed quantitative proteomics.

Schweppe, D. K.; Eng, J. K.; Bailey, D.; Rad, R.; Yu, Q.; Navarrete-Perea, J.; Huttlin, E. L.; Erickson, B. K.; Paulo, J. A.; Gygi, S. P.

10.1101/668533 — cell biology — Posted on 2019-06-12

1874 A Protein Engineering Approach for Uncovering Cryptic Ubiquitin-binding Sites: from a Ubiquitin-Variant Inhibitor of APC/C to K48 Chain Binding

Watson, E. R.; Grace, C. R. R.; Zhang, W.; Miller, D. J.; Davidson, I. F.; Prabu, J. R.; Yu, S.; Bolhuis, D. L.; Kulko, E. T.; Vollrath, R.; Haselbach, D.; Stark, H.; Peters, J.-M.; Brown, N. G.; Sidhu, S. S.; Schulman, B. A.

10.1101/669846 — biochemistry — Posted on 2019-06-12

1875 The RNA Binding Protein FMRP Promotes Myelin Sheath Growth

Doll, C. A.; Yergert, K. M.; Appel, B. H.

10.1101/669895 — neuroscience — Posted on 2019-06-12

1876 Coordination between stochastic and deterministic specification in the Drosophila visual system

Courgeon, M.; Desplan, C.

10.1101/669408 — neuroscience — Posted on 2019-06-12

1877 Independent population coding of the present and the past in prefrontal cortex during learning

Maggi, S.; Humphries, M. D.

10.1101/668962 — neuroscience — Posted on 2019-06-12

1878 The rapid divergence of the Antarctic crinoid species Promachocrinus kerguelensis

Ben Chehida, Y.; Eleaume, M.; Gallut, C.; Achaz, G.

10.1101/666248 — evolutionary biology — Posted on 2019-06-12

1879 Predicting the Evolution of White Matter Hyperintensities in Brain MRI using Generative Adversarial Networks and Irregularity Map

Rachmadi, M. F.; Vades Hernandez, M. d. C.; Makin, S.; Wardlaw, J. M.; Komura, T.

10.1101/662692 — neuroscience — Posted on 2019-06-12

1880 Long-term experimental evolution reveals purifying selection on piRNA-mediated control of transposable element expression

Bergthorsson, U.; Singh, S.; Konrad, A.; Belicard, T.; Beltran, T.; Katju, V.; Sarkies, P.

10.1101/666693 — molecular biology — Posted on 2019-06-12

1881 A CLEAR pipeline for direct comparison of circular and linear RNA expression

Ma, X.-K.; Wang, M.-R.; Liu, C.-X.; Dong, R.; Carmichael, G. G.; Chen, L.-L.; Yang, L.

10.1101/668657 — bioinformatics — Posted on 2019-06-12

1882 Global analysis of Two Component System (TCS) member of chickpea and other legume genomes implicates its role in enhanced nodulation

Tiwari, M.; Yadav, M.; Singh, B.; Pandey, V.; Nawaz, K.; Bhatia, S.

10.1101/667741 — genomics — Posted on 2019-06-12

1883 Widespread immunogenic poly-epitope frameshift mutations in microsatellite unstable tumors

Roudko, V.; Cimen Bozkus, C.; Orfanelli, T.; Blank, S. V.; Greenbaum, B.; Bhardwaj, N.

10.1101/662262 — cancer biology — Posted on 2019-06-12

1884 Molecular Profiles of Matched Primary and Metastatic Tumor Samples Support an Evolutionary Model of Breast Cancer

Chen, R.; Goodison, S.; Sun, Y.

10.1101/667303 — bioinformatics — Posted on 2019-06-12

1885 Transcriptome dynamics predict thermotolerance in Caenorhabditis elegans

Jovic, K.; Grilli, J.; Sterken, M. G.; Riksen, J. A. G.; Snoek, B. L.; Allesina, S.; Kammenga, J.

10.1101/661652 — genomics — Posted on 2019-06-12

1886 Single Cell Viewer (SCV): An interactive visualization data portal for single cell RNA sequence data

Wang, S.; Brett, C.; Bolisetty, M.; Golhar, R.; Neuhaus, I.; Ravi, K.

10.1101/664789 — bioinformatics — Posted on 2019-06-12

1887 Revealing microbial assemblage structure in the human gut microbiome using latent Dirichlet allocation

Hosoda, S.; Nishijima, S.; Fukunaga, T.; Hattori, M.; Hamada, M.

10.1101/664219 — microbiology — Posted on 2019-06-12

1888 Recounting the FANTOM Cage Associated Transcriptome

10.1101/659490 — genomics — Posted on 2019-06-12

1889 Distinct gut metagenomics and metaproteomics signatures in prediabetics and treatment-naïve type 2 diabetics

Zhong, H.; Ren, H.; Lu, Y.; Fang, C.; Hou, G.; Yang, Z.; Chen, B.; Yang, F.; Zhao, Y.; Shi, Z.; Zhao, B.; Wu, J.; Zou, H.; Zi, J.; Chen, J.; Bao, X.; Hu, Y.; Gao, Y.; Zhang, J.; Xu, X.; Hou, Y.; Yang, H.; Wang, J.; Liu, S.; Jia, H.; Madsen, L.; Brix, S.; Liu, F.; Kristiansen, K.; Li, J.

10.1101/666263 — microbiology — Posted on 2019-06-12

1890 Low abundance of circulating tumor DNA in localized prostate cancer

Hennigan, S. T.; Trostel, S. Y.; Terrigino, N. T.; Voznesensky, O. S.; Schaeffer, R. J.; Whitlock, N. C.; Wilkinson, S.; Carrabba, N. V.; Atway, R.; Shema, S.; Lake, R.; Sweet, A. R.; Einstein, D. J.; Karzai, F.; Gulley, J. L.; Chang, P.; Bubley, G. J.; Balk, S. P.; Ye, H.; Sowalsky, A. G.

10.1101/655506 — genomics — Posted on 2019-06-12

1891 Cancer/Testis Antigens Differentially Expressed in Prostate Cancer: Potential New Biomarkers and Targets for Immunotherapies

Kagohara, L.; Carleton, N. M.; Takahashi, S.; Shiraishi, T.; Mooney, S. M.; Vessella, R. L.; Getzenberg, R. H.; Kulkarni, P.; Veltri, R. W.

10.1101/646869 — cancer biology — Posted on 2019-06-12

1892 Epigenomic profiling discovers trans-lineage SOX2 partnerships driving tumor heterogeneity in lung squamous cell carcinoma

Sato, T.; Yoo, S.; Kong, R.; Fridrikh, M.; Sinha, A.; Chandramani-Shivalingappa, P.; Patel, A.; Nagano, O.; Masuko, T.; Beasley, M. B.; Powell, C. A.; Zhu, J.; Watanabe, H.

10.1101/646034 — cancer biology — Posted on 2019-06-12

1893 The development of cooperative channels explains the maturation of hair cell’s mechanotransduction

Gianoli, F.; Risler, T.; Kozlov, A. S.

10.1101/654764 — biophysics — Posted on 2019-06-12

1894 Allelic polymorphism shapes collective phenotypes in evolving Pseudomonas aeruginosa populations

Azimi, S.; Roberts, A. E.; Peng, S.; Weitz, J. S.; McNally, A.; Brown, S. P.; Diggle, S. P.

10.1101/644724 — microbiology — Posted on 2019-06-12

1895 A synthetic morphogenic membrane system that responds with self-organized shape changes to local light cues

Gavriljuk, K.; Scocozza, B.; Ghasemalizadeh, F.; Nandan, A. P.; Campos Medina, M.; Seidel, H.; Schmick, M.; Koseska, A.; Bastiaens, P.

10.1101/481887 — synthetic biology — Posted on 2019-06-12

1896 Different components of the RNAi machinery are required for conidiation, ascosporogenesis, virulence, DON production and fungal inhibition by exogenous dsRNA in the Head Blight pathogen Fusarium graminearum

Gaffar, F. Y.; Imani, J.; Karlovsky, P.; Koch, A.; Kogel, K.-H.

10.1101/633099 — pathology — Posted on 2019-06-12

1897 Aversive Learning Increases Release Probability of Olfactory Sensory Neurons

Bhattarai, J. P.; Schreck, M.; Moberly, A. H.; Luo, W.; Ma, M.

10.1101/642751 — neuroscience — Posted on 2019-06-12

1898 Dysregulation of M segment gene expression contributes to influenza A virus host restriction

Calderon, B. M.; Danzy, S.; Delima, G. K.; Jacobs, N. T.; Ganti, K.; Hockman, M. R.; Conn, G. L.; Lowen, A. C.; Steel, J.

10.1101/599886 — microbiology — Posted on 2019-06-12

1899 Analytical strategies to include the X-chromosome in variance heterogeneity analyses: evidence for trait-specific polygenic variance structure

Deng, W.; Kalnapenkis, A.; Mao, S.; Magi, R.; Esko, T.; Pare, G.; Sun, L.

10.1101/306654 — genetics — Posted on 2019-06-12

1900 Coding Triplets in the Transfer RNA Arm and Their Role in Present and Past tRNA Recognition

Agmon, I.; Fayerverker, I.; Mor, T.

10.1101/559948 — genetics — Posted on 2019-06-12

1901 The TFIIH components p44/p62 act as a damage sensor during nucleotide excision repair

Barnett, J. T.; Kuper, J.; Koelmel, W.; Kisker, C.; Kad, N. M.

10.1101/643874 — biochemistry — Posted on 2019-06-12

1902 Cortical sensitivity to natural scene structure

Kaiser, D.; Haeberle, G.; Cichy, R. M.

10.1101/613885 — neuroscience — Posted on 2019-06-12

1903 Distributed Code for Semantic Relations Predicts Neural Similarity

Chiang, J.; Peng, Y.; Lu, H.; Holyoak, K.; Monti, M.

10.1101/596726 — neuroscience — Posted on 2019-06-12

1904 Curious connections: white matter pathways supporting individual differences in epistemic and perceptual curiosity

Valji, A.; Priemysheva, A.; Hodgetts, C. J.; Costigan, A. G.; Parker, G. D.; Graham, K. S.; Lawrence, A. D.; Gruber, M. J.

10.1101/642165 — neuroscience — Posted on 2019-06-12

1905 Predicting synchronous firing of large neural populations from sequential recordings

Sorochynskyi, O.; Deny, S.; Marre, O.; Ferrari, U.

10.1101/560656 — neuroscience — Posted on 2019-06-12

1906 Characteristic sounds facilitate object search in real-life scenes

Kvasova, D.; Garcia-Vernet, L.; Soto-Faraco, S.

10.1101/563080 — neuroscience — Posted on 2019-06-12

1907 The conserved transcriptional regulator CdnL is required for metabolic homeostasis and morphogenesis in Caulobacter

Woldemeskel, S. A.; Alvarez, L.; Daitch, A. K.; Zeinert, R.; Bhargava, A.; Gonzalez, D.; Collier, J.; Chien, P.; Cava, F.; Goley, E. D.

10.1101/557637 — microbiology — Posted on 2019-06-12

1908 Ubiquinone biosynthesis over the entire O2 range: characterization of a conserved, O2-independent pathway

Pelosi, L.; Vo, C.-D.-T.; Abby, S.; Loiseau, L.; Rascalou, B.; Hajj Chehade, M.; Faivre, B.; Gousse, M.; Chenal, C.; Touati, N.; Binet, L.; Cornu, D.; Fyfe, C. D.; Fontecave, M.; Barras, F.; Murielle, L.; Pierrel, F.

10.1101/587956 — microbiology — Posted on 2019-06-12

1909 Cellular heterogeneity in pressure and growth emerges from tissue topology and geometry

Long, Y.; Cheddadi, I.; Mirabet, V.; Mosca, G.; Dumond, M.; Traas, J.; Godin, C.; Boudaoud, A.

10.1101/334664 — biophysics — Posted on 2019-06-12

1910 Epistatic Transcription Factor Networks Differentially Modulate Arabidopsis Growth and Defense

Li, B.; Tang, M.; Caseys, C.; Nelson, A.; Zhou, M.; Zhou, X.; Brady, S.; Kliebenstein, D.

10.1101/583047 — plant biology — Posted on 2019-06-12

1911 Confidence predicts speed-accuracy tradeoff for subsequent decisions

Desender, K.; Boldt, A.; Verguts, T.; Donner, T. H.

10.1101/466730 — neuroscience — Posted on 2019-06-12

1912 Global biogeographical regions of freshwater fish species

Leroy, B.; Dias, M. S.; Giraud, E.; Hugueny, B.; Jezequel, C.; Leprieur, F.; Oberdorff, T.; Tedesco, P. A.

10.1101/319566 — ecology — Posted on 2019-06-12

1913 Boundaries in Spatial Cognition: Looking like a Boundary is More Important than Being a Boundary

Negen, J.; Sandri, A.; Lee, S. A.; Nardini, M.

10.1101/391037 — animal behavior and cognition — Posted on 2019-06-12

1914 CRISPR-TSKO facilitates efficient cell type-, tissue-, or organ-specific mutagenesis in Arabidopsis

Decaestecker, W.; Andrade Buono, R.; Pfeiffer, M. L.; Vangheluwe, N.; Jourquin, J.; Karimi, M.; Van Isterdael, G.; Beeckman, T.; Nowack, M. K.; Jacobs, T. B. B.

10.1101/474981 — plant biology — Posted on 2019-06-12

1915 Dissecting dynamics and differences of selective pressures in the evolution of human pigmentation

Huang, X.; He, Y.; Wang, S.; Jin, L.

10.1101/253963 — evolutionary biology — Posted on 2019-06-12

1916 KH-type splicing regulatory protein controls colorectal cancer cell growth and modulates the tumor microenvironment

Caiazza, F.; Oficjalska, K.; Tosetto, M.; Phelan, J.; Noonan, S.; Martin, P.; Killick, K.; Breen, L.; O'Neill, F.; Nolan, B.; Furney, S.; Power, R.; Fennelly, D.; Craik, C.; O'Sullivan, J.; Sheahan, K.; Dohery, G.; Ryan, E.

10.1101/342840 — cancer biology — Posted on 2019-06-12

1917 Bond type and discretization of non-muscle myosin II are critical for simulated contractile dynamics

Cortes, D.; Maddox, A.; Nedelec, F.; Gordon, M. B.

10.1101/669382 — cell biology — Posted on 2019-06-12

1918 Targeting the Cx43 Carboxyl Terminal H2 Domain Preserves Left Ventricular Function Following Ischemia-Reperfusion Injury

Jiang, J.; Palatinus, J. A.; He, H.; Iyyathurai, J.; Jourdan, J. L.; Hoagland, D.; Bultynck, G.; Wang, Z.; Zhang, Z.; Schey, K.; Poelzing, S.; McGowan, F. X.; Gourdie, R. G.

10.1101/668509 — cell biology — Posted on 2019-06-12

1919 Low oxygen enhances trophoblast column growth by potentiating the extravillous lineage and promoting LOX activity

Treissman, J.; Yuan, V.; Baltayeva, J.; Le, H. T.; Castellana, B.; Robinson, W. P.; Beristain, A. G.

10.1101/669796 — developmental biology — Posted on 2019-06-12

1920 Cannabinoid Receptor 2 (CB2) Signals via G-alpha-s and Induces IL-6 and IL-10 Cytokine Secretion in Primary Human Leukocytes

Saroz, Y.; Kho, D. T.; Glass, M.; Graham, S.; Grimsey, N. L.

10.1101/663831 — cell biology — Posted on 2019-06-12

1921 Networks of enhancers and microRNAs drive variation in cell states

Chakraborty, M.; Hu, S.; Del Giudice, M.; De Martino, A.; Bosia, C.; Sharp, P. A.; Garg, S.

10.1101/668145 — cell biology — Posted on 2019-06-12

1922 N1-methyladenine safeguards against aberrant RNA-protein association during proteostasis stress

Alriquet, M.; Calloni, G.; Martinez-Limon, A.; Delli Ponti, R.; Hanspach, G.; Hengesbach, M.; Tartaglia, G. G.; Vabulas, R. M.

10.1101/667543 — cell biology — Posted on 2019-06-12

1923 Early Life Supraphysiological Levels of Oxygen Exposure Permanently Impairs Hippocampal Mitochondrial Function

Ramani, M.; Miller, K.; Kumar, R.; Kadasamy, J.; McMahon, L.; Ballinger, S.; Ambalavanan, N.

10.1101/668111 — neuroscience — Posted on 2019-06-12

1924 RIF1 ensures the organization of replication factories upon DNA replicative stress.

Ribeyre, C.; Larroque, M.; Larroque, C.; Constantinou, A.

10.1101/669234 — cell biology — Posted on 2019-06-12

1925 A Refined Open State of the Glycine Receptor Obtained Via Molecular Dynamics Simulations

Daemgen, M.; Biggin, P. C.

10.1101/668830 — biophysics — Posted on 2019-06-12

1926 Shiny-SoSV: A web app for interactive evaluation of somatic structural variant calls

Gong, T.; Hayes, V. M.; Chan, E. K.

10.1101/668723 — bioinformatics — Posted on 2019-06-12

1927 Tomato yellow leaf curl virus V2 protein plays a critical role in the nuclear export of V1 protein and viral systemic infection

Zhao, W.; Ji, Y.; Wu, S.; Barton, E.; Fan, Y.; Wang, X.; Zhou, Y.

10.1101/669754 — pathology — Posted on 2019-06-12

1928 Disentangling group specific QTL allele effects from genetic background epistasis using admixed individuals in GWAS: an application to maize flowering

Rio, S.; Mary-Huard, T.; Laurence, M.; Bauland, C.; Carinne, P.; Delphine, M.; Combes, V.; Alain, C.

10.1101/669721 — genetics — Posted on 2019-06-12

1929 On the use of inhibitors of 4-hydroxyphenylpyruvate dioxygenase as a vector-selective insecticide in the control of mosquitoes

Ramirez, M. A. V.; Sterkel, M.; Martins, A. d. J.; Lima, J. B. P.; Oliveira, P. L.

10.1101/669747 — physiology — Posted on 2019-06-12

1930 Microstimulation of primate neocortex targeting striosomes induces negative decision-making

Amemori, S.; Amemori, K.-i.; Yoshida, T.; Papageorgiou, G. K.; Xu, R.; Shimazu, H.; Desimone, R.; Graybiel, A. M.

10.1101/668194 — neuroscience — Posted on 2019-06-12

1931 Mast cells are mediators of fibrosis and effector cell recruitment in dermal chronic graft-versus-host disease

Strattan, E.; Palaniyandi, S.; Kumari, R.; Du, J.; Hakim, N.; Huang, T.; Kesler, M.; Jennings, C. D.; Sturgill, J.; Hildebrandt, G. C.

10.1101/668236 — immunology — Posted on 2019-06-12

1932 Clustered CTCF binding is an evolutionary mechanism to maintain topologically associating domains

Kentepozidou, E.; Aitken, S. J.; Feig, C.; Stefflova, K.; Ibarra-Soria, X.; Odom, D. T.; Roller, M.; Flicek, P.

10.1101/668855 — genomics — Posted on 2019-06-12

1933 Single-cell whole-genome sequencing reveals mutational landscapes of DNA mismatch repair deficiency in mouse primary fibroblasts

Zhang, L.; Dong, X.; Hao, X.; Lee, M.; Chi, Z.; Jin, B.; Maslov, A. Y.; Edelmann, W.; Vijg, J.

10.1101/668467 — genomics — Posted on 2019-06-12

1934 Synchronization of mammalian motile cilia in the brain with hydrodynamic forces

Cicuta, P.; Pellicciotta, N.; Hamilton, E.; Spassky, N.; Delgehyr, N.; Faucourt, M.; Kotar, J.

10.1101/668459 — biophysics — Posted on 2019-06-12

1935 Single Cell Viewer (SCV): An interactive visualization data portal for single cell RNA sequence data

Ravi, K.; Neuhaus, I.; Wang, S.; Brett, C.; Bolisetty, M.; Golhar, R.

10.1101/664789 — bioinformatics — Posted on 2019-06-12

1936 Phase separation of TPX2 enhances and spatially coordinates microtubule nucleation

King, M. R.; Petry, S.

10.1101/668426 — biochemistry — Posted on 2019-06-12

1937 Dependence of fluorodeoxyglucose (FDG) uptake on cell cycle and dry mass: a single-cell study using a multi-modal radiography platform

Sung, Y.; Tetrault, M.-A.; Takahashi, K.; Ouyang, J.; Pratx, G.; Normandin, M.; El Fakhri, G.

10.1101/668392 — biophysics — Posted on 2019-06-12

1938 Neurophysiological Substrates of Configural Face Perception in Schizotypy

Ahn, S.; Lustenberger, C.; Jarskog, L. F.; Frohlich, F.

10.1101/668400 — neuroscience — Posted on 2019-06-12

1939 Clinicopathological characteristics and survival of lymphoepithelial carcinoma of the oral cavity and pharynx: a population-based study

Pan, S.; Bai, D.; Zhao, F.

10.1101/669671 — genetics — Posted on 2019-06-12

1940 Mitochondrial genomes of Columbicola feather lice are highly fragmented, indicating repeated evolution of minicircle-type genomes in parasitic lice

Sweet, A. D.; Johnson, K. P.; Cameron, S. L.

10.1101/668178 — evolutionary biology — Posted on 2019-06-12

1941 Diversity and disease: evidence for the monoculture effect beyond agricultural systems

Ekroth, A. K. E.; Rafaluk-Mohr, C.; King, K. C.

10.1101/668228 — ecology — Posted on 2019-06-12

1942 Landscape heterogeneity of peasant-managed agricultural matrices

Urrutia, A. L.; Gonzalez-Gonzalez, C.; Mora Van Cauwelaert, E.; Rosell, J. A.; Garcia Barrios, L.; Benitez, M.

10.1101/668103 — ecology — Posted on 2019-06-12

1943 Midkine-a is required for cell cycle progression of Müller glia during neuronal regeneration

Nagashima, M.; D'Cruz, T. S.; Hesse, D.; Sifuentes, C. J.; Raymond, P. A.; Hitchcock, P. F.

10.1101/668210 — developmental biology — Posted on 2019-06-12

1944 Adopting tipping-point theory to transcriptome profiles unravels disease regulatory trajectory

Yang, X. H.; Wang, Z.; Griggs, D.; An, Q.; Tang, F.; Cunningham, J.

10.1101/668442 — systems biology — Posted on 2019-06-12

1945 Gli2 is necessary for migration of ventral Neural Stem Cells to demyelinated lesions

Radecki, D. Z.; Messling, H.; Haggerty-Skeans, J. R.; Samanta, J.; Salzer, J. L.

10.1101/668418 — neuroscience — Posted on 2019-06-12

1946 Low-Density Granulocytes are a novel immunopathological feature in both Multiple Sclerosis and Neuromyelitis optica spectrum disorder.

Ostendorf, L.; Mothes, R.; van Koppen, S.; Lindquist, R. L.; Bellmann-Strobl, J.; Asseyer, S.; Ruprecht, K.; Alexander, T.; Niesner, R. A.; Hauser, A. E.; Paul, F.; Radbruch, H.

10.1101/668160 — immunology — Posted on 2019-06-12

1947 Low-rate firing limit for neurons with axon, soma and dendrites driven by spatially distributed stochastic synapses

Gowers, R. P.; Timofeeva, Y.; Richardson, M. J. E.

10.1101/669705 — neuroscience — Posted on 2019-06-12

1948 Cell fate forecasting: a data assimilation approach to predict epithelial-mesenchymal transition

Mendez, M. J.; Hoffman, M. J.; Cherry, E. M.; Lemmon, C. A.; Weinberg, S. H.

10.1101/669713 — cell biology — Posted on 2019-06-12

1949 The transcription factor basal regulatory network of Homo sapiens and Saccharomyces cerevisiae: uncovering the relationship between topology and phenotype

Hernandez Dominguez, J. L.; Brass, A.; Navarro-Lopez, E.

10.1101/669697 — bioinformatics — Posted on 2019-06-12

1950 Diversity and Life-cycle Analysis of Pacific Ocean Zooplankton by Videomicroscopy and DNA Barcoding. I. Cnidaria

Bryant, P. J.; Arehart, T.

10.1101/669663 — zoology — Posted on 2019-06-12

1951 Gluten-free Fish? Marine Carnivores Cobia (Rachycentron canadum) and European Sea Bass (Dicentrarchus labrax) Have Different Tolerances to Dietary Wheat Gluten

Larkin, M.; Watson, A.; Place, A.

10.1101/669655 — molecular biology — Posted on 2019-06-12

1952 Bioactive compounds from Chrysosporium multifidum, a fungus isolated from Hermetia illucens gut microbiota

Cabanillas, B.; Correa, Y.; Jullian, V.; Alvarez, D.; Castillo, D.; Dufloer, C.; Bustamante, B.; Roncal, E.; Neyra, E.; Sheen, P.; Sauvain, M.

10.1101/669515 — microbiology — Posted on 2019-06-12

1953 Adoptive transfer of CTLA4-Ig-modulated dendritic cells improves TNBS-induced colitis

Paiatto, L. N.; Silva, F. G. D.; Yamada, A. T.; Tamashiro, W. M. d. S. C.; Simioni, P. U.

10.1101/669630 — immunology — Posted on 2019-06-12

1954 Spatial distribution of epibionts on olive ridley sea turtles at Playa Ostional, Costa Rica

Robinson, N. J.; Lazo-Wasem, E.; Butler, B.; Lazo-Wasem, E.; Zardus, J.; Pinou, T.

10.1101/669523 — zoology — Posted on 2019-06-12

1955 Influence of fats, carotenoids and POPs on the reproduction of the leatherback turtle

Marco, A.; Negro Balmaseda, J. J.; Navarro, J. C.; de Andres, E.

10.1101/669580 — physiology — Posted on 2019-06-12

1956 Socio-demographic correlates and clustering of Non-Communicable Diseases risk factors among reproductive aged women of Nepal: Results from Nepal Demographic Health Survey 2016

Bista, B.; Dhungana, R. R.; Chalise, B.; Pandey, A. R.

10.1101/669556 — epidemiology — Posted on 2019-06-12

1957 PRR14 Overexpression Promotes Cell Growth, Epithelial to Mesenchymal Transition and Metastasis of Colon Cancer via the AKT Pathway

Fu, L.; Li, F.; Zhang, C.

10.1101/669549 — cancer biology — Posted on 2019-06-12

zhou, k.

10.1101/669507 — plant biology — Posted on 2019-06-12

1959 Mass evacuation and increases in long-term care benefits: lessons from the Fukushima nuclear disaster

Morita, T.; Ohtsu, Y.; Ando, M.

10.1101/669499 — epidemiology — Posted on 2019-06-12

1960 PRODIGY: personalized prioritization of driver genes

Dinstag, G.; Shamir, R.

10.1101/456723 — bioinformatics — Posted on 2019-06-12

1961 NG2 glia are required for maintaining microglia homeostatic state

Liu, Y.; Aguzzi, A.

10.1101/667402 — neuroscience — Posted on 2019-06-12

1962 Neoproterozoic origin and multiple transitions to macroscopic growth in green seaweeds

Del Cortona, A.; Jackson, C. J.; Bucchini, F.; Van Bel, M.; D'hondt, S.; Skaloud, P.; Delwiche, C.; Knoll, A.; Raven, J.; Verbruggen, H.; Vandepoele, K.; De Clerck, O.; Leliaert, F.

10.1101/668475 — evolutionary biology — Posted on 2019-06-12

1963 Diversity of Microarthropods in Different Habitats: An Ecological Perspective

Abbas, M. J.; Parwez, H.

10.1101/668707 — ecology — Posted on 2019-06-12

1964 Dissociation of disease phenotype and allele silencing in hypertrophic cardiomyopathy

Dainis, A.; Zaleta-Rivera, K.; Ribeiro, A.; Chang, A. C. H.; Shang, C.; Lan, F.; Burridge, P. W.; Wu, J. C.; Chang, A. C. Y.; Pruitt, B. L.; Wheeler, M.; Ashley, E.

10.1101/642421 — genetics — Posted on 2019-06-12

1965 Effect of habitat quality, microclimatic conditions and waste water contamination on diversity & distribution of Collembola community

Abbas, M. J.; Parwez, H.

10.1101/668749 — ecology — Posted on 2019-06-12

1966 Environmental Triggers of lrgA Expression in Streptococcus mutans

Ishkov, I.; Ahn, S.-J.; Rice, K. C.; Hagen, S. J.

10.1101/668731 — biophysics — Posted on 2019-06-12

1967 Early alterations of RNA metabolism and splicing from adult corticospinal neurons in an ALS mouse model

Marques, C.; Fischer, M.; Keime, C.; Burg, T.; Brunet, A.; Scekic-Zahirovic, J.; Rouaux, C.

10.1101/667733 — neuroscience — Posted on 2019-06-12

1968 Cooperation mitigates diversity loss in a spatially expanding microbial population

Gandhi, S. R.; Korolev, K.; Gore, J.

10.1101/668590 — ecology — Posted on 2019-06-12

1969 Non-uniform distribution of myosin-mediated forces governs red blood cell curvature through tension modulation

Alimohamadi, H.; S. Smith, A.; M. Fowler, V.; Rangamani, P.

10.1101/668582 — biophysics — Posted on 2019-06-12

1970 Cross-linked RNA Secondary Structure Analysis using Network Techniques

Fischer-Hwang, I.; Lu, Z.; Zou, J.; Weissman, T.

10.1101/668491 — bioinformatics — Posted on 2019-06-12

1971 A CLEAR pipeline for direct comparison of circular and linear RNA expression

Ma, X.-K.; Wang, M.-R.; Liu, C.-X.; Dong, R.; Carmichael, G. G.; Chen, L.-L.; Yang, L.

10.1101/668657 — bioinformatics — Posted on 2019-06-12

1972 Compound heterozygosity of the gamma-glutamyl carboxylase mutants V255M and S300F causes pseudoxanthoma elasticum-like disease through impaired processivity

Rishavy, M. A.; Hallgren, K. W.; Runge, K. W.; Berkner, K. L.

10.1101/668574 — biochemistry — Posted on 2019-06-12

1973 A theoretical model of neural maturation during the spinal cord neurogenesis

Joshi, P.; Skromne, I.

10.1101/668640 — systems biology — Posted on 2019-06-12

1974 The Salix SmSPR1 Involved in Light-Regulated Cell Expansion by Modulating Microtubule Arrangement

Xiaoxia, L.; Jianguo, Z.; Jinkai, S.; Ying, L.; Guodong, R.

10.1101/668889 — plant biology — Posted on 2019-06-12

1975 Brain-wide mapping of contextual fear memory engram ensembles supports the dispersed engram complex hypothesis

Roy, D. S.; Park, Y.-G.; Ogawa, S. K.; Cho, J. H.; Choi, H.; Kamensky, L.; Martin, J.; Chung, K.; Tonegawa, S.

10.1101/668483 — neuroscience — Posted on 2019-06-12

1976 Prepontine non-giant neurons drive flexible escape behavior in zebrafish

Marquart, G. D.; Tabor, K. M.; Bergeron, S. A.; Briggman, K. L.; Burgess, H. A.

10.1101/668517 — neuroscience — Posted on 2019-06-12

1977 Cdc48/VCP and endocytosis regulate TDP-43 and FUS toxicity and turnover

Liu, G.; Byrd, A.; Pei, F.; Buchanan, A.; Basha, E.; Warner, A.; Buchan, J. R.

10.1101/668798 — molecular biology — Posted on 2019-06-12

1978 Highly Genotype- and Tissue-specific Single-Parent Expression Drives Dynamic Gene Expression Complementation in Maize Hybrids

Li, Z.; Zhou, P.; Della Coletta, R.; Zhang, T.; Brohammer, A.; Vaillancourt, B.; Lipzen, A.; Daum, C.; Barry, K.; de Leon, N.; Hirsch, C.; Buell, C. R.; Kaeppler, S.; Springer, N.; Hirsch, C.

10.1101/668681 — genomics — Posted on 2019-06-12

1979 The somatic mutation landscape of the human body

Garcia-Nieto, P. E.; Morrison, A. J.; Fraser, H. B.

10.1101/668624 — genomics — Posted on 2019-06-12

1980 Dynamic patterns of transcript abundance of transposable element families in maize

Anderson, S. N.; Stitzer, M.; Zhou, P.; Ross-Ibarra, J.; Hirsch, C. D.; Springer, N. M.

10.1101/668558 — genomics — Posted on 2019-06-12

1981 From plasmodesma geometry to effective symplastic permeability through biophysical modelling

Deinum, E. E.; Benitez Alfonso, Y.; Mulder, B.

10.1101/668715 — cell biology — Posted on 2019-06-12

1982 Glucosinolate and phenylpropanoid biosynthesis are linked by proteasome-dependent degradation of PAL

Kim, J.; Zhang, X.; Pascuzzi, P.; Liu, C.-J.; Chapple, C.

10.1101/668038 — plant biology — Posted on 2019-06-12

1983 Deviant EEG resting-state large-scale brain network dynamics in euthymic bipolar disorder patients

Damborska, A.; Piguet, C.; Aubry, J.-M.; Dayer, A.; Michel, C.; Berchio, C.

10.1101/668004 — neuroscience — Posted on 2019-06-12

1984 Night watch during REM sleep for the first-night effect

Tamaki, M.; Sasaki, Y.

10.1101/668020 — neuroscience — Posted on 2019-06-12

1985 The identification of mecciRNAs and their roles in mitochondrial entry of proteins

Liu, X.; Wang, X.; Li, J.; Hu, S.; Deng, Y.; Yin, H.; Bao, X.; Zhang, Q. C.; Wang, G.; Wang, B.; Shi, Q.; Shan, G.

10.1101/668665 — molecular biology — Posted on 2019-06-12

1986 Population Genomics of GII.4 Noroviruses Reveal Complex Diversification and New Antigenic Sites Involved in the Emergence of Pandemic Strains

Tohma, K.; Lepore, C. J.; Gao, Y.; Ford-Siltz, L. A.; Parra, G. I.

10.1101/668772 — microbiology — Posted on 2019-06-12

1987 Epithelium intrinsic vitamin A signaling co-ordinates pathogen clearance in the gut via IL-18

Iyer, N.; Grizotte-Lake, M.; Gordon, S. R.; Palmer, A. C. S.; Calvin, C.; Vaishnava, S.

10.1101/667998 — immunology — Posted on 2019-06-12

1988 Evolutionary time explains the global distribution of freshwater fish diversity

Miller, E. C.; Roman-Palacios, C.

10.1101/668079 — evolutionary biology — Posted on 2019-06-12

1989 Macromolecule Translocation in a Nanopore: Center of Mass Drift-Diffusion over an Entropic Barrier

Dell, Z. E.; Muthukumar, M.

10.1101/667816 — biophysics — Posted on 2019-06-12

1990 Cyclic oligoadenylate signalling mediates Mycobacterium tuberculosis CRISPR defence

Grüschow, S.; Athukoralage, J. S.; Graham, S.; Hoogeboom, T.; White, M. F.

10.1101/667758 — biochemistry — Posted on 2019-06-12

1991 Molecular determinants of Arc oligomerization and formation of virus-like capsids

Eriksen, M. S.; Nikolaienko, O.; Hallin, E. I.; Grodem, S.; Bustad, H. J.; Flydal, M. I.; O'Connell, R.; Hosokawa, T.; Lascu, D.; Akerkar, S.; Cuellar, J.; Chambers, J. J.; Muruganandam, G.; Loris, R.; Kanhema, T.; Hayashi, Y.; Stratton, M. M.; Valpuesta, J. M.; Kursula, P.; Martinez, A.; Bramham, C. R.

10.1101/667956 — biochemistry — Posted on 2019-06-12

1992 Context information supports serial dependence of multiple visual objects across memory episodes

Fischer, C.; Czoschke, S.; Peters, B.; Rahm, B.; Kaiser, J.; Bledowski, C.

10.1101/667626 — neuroscience — Posted on 2019-06-12

1993 Impaired Desynchronization of Beta Activity Underlies Memory Deficits in People with Parkinson’s Disease

MacDonald, H.; Brittain, J.-S.; Spitzer, B.; Hanslmayr, S.; Jenkinson, N.

10.1101/667550 — neuroscience — Posted on 2019-06-12

1994 An Automated Open-Source Workflow for Standards-Compliant Integration of Small Animal Magnetic Resonance Imaging Data

Ioanas, H.-I.; Marks, M.; Garin, C. M.; Dhenain, M.; Yanik, M. F.; Rudin, M.

10.1101/667980 — neuroscience — Posted on 2019-06-12

1995 Global analysis of Two Component System (TCS) member of chickpea and other legume genomes implicates its role in enhanced nodulation

Tiwari, M.; Yadav, M.; Singh, B.; Pandey, V.; Nawaz, K.; Bhatia, S.

10.1101/667741 — genomics — Posted on 2019-06-12

1996 Variance heterogeneity genome-wide mapping for cadmium in bread wheat reveals novel genomic loci and epistatic interactions

Hussain, W.; Campbell, M.; Jarquin, D.; Walia, H.; Morota, G.

10.1101/668087 — genetics — Posted on 2019-06-12

1997 genomalicious: serving up a smorgasbord of R functions for population genomic analyses

Thia, J. A.; Riginos, C.

10.1101/667337 — bioinformatics — Posted on 2019-06-12

1998 Building a story: coherent narrative formation relies on functional connectivity in posterior cortex and frontoparietal networks

Assouline, A.; Mendelsohn, A.

10.1101/667618 — neuroscience — Posted on 2019-06-12

1999 Reproducibility of Structural Brain Alterations Associated with Transdiagnostic Risk for Mental Illness: Evidence from a Population-Representative Birth Cohort

Romer, A. L.; Knodt, A. R.; Sison, M. L.; Ireland, D.; Ramrakha, S.; Poulton, R.; Keenan, R.; Melzer, T. R.; Moffitt, T. E.; Caspi, A.; Hariri, A. R.

10.1101/667220 — neuroscience — Posted on 2019-06-12

2000 The Evolution of Siphonophore Tentilla as Specialized Tools for Prey Capture

Damian-Serrano, A.; Haddock, S. H. D.; Dunn, C. W.

10.1101/653345 — evolutionary biology — Posted on 2019-06-12

2001 Molecular Profiles of Matched Primary and Metastatic Tumor Samples Support an Evolutionary Model of Breast Cancer

Sun, Y.; Chen, R.; Goodison, S.

10.1101/667303 — bioinformatics — Posted on 2019-06-12

2002 Engineering the yeast Saccharomyces cerevisiae for the production of L-(+)-ergothioneine

van der Hoek, S. A.; Darbani, B.; Zugaj, K. E.; Prabhala, B. K.; Biron, M. B.; Randelovic, M.; Medina, J. B.; Kell, D. B.; Borodina, I.

10.1101/667592 — bioengineering — Posted on 2019-06-12

2003 Paradoxical β-lactamase activity of archaeal encoding enzymes

Diene, S. M.; Pinault, L.; Armstrong, N.; Keshri, V.; Khelaifia, S.; Chabriere, E.; Caetano-Anolles, G.; Rolain, J.-M.; Pontarotti, P.; Raoult, D.

10.1101/667907 — microbiology — Posted on 2019-06-12

2004 Aligning RNA-Seq reads to a sex chromosome complement informed reference genome increases ability to detect sex differences in gene expression

Olney, K. C.; Brotman, S. M.; Valverde-Vesling, V.; Andrews, J.; Wilson, M. A.

10.1101/668376 — evolutionary biology — Posted on 2019-06-12

2005 Is proton magnetic resonance spectroscopy a valid method to quantify muscle carnosine in humans?

Silva, V. d. E.; Painelli, V. d. S.; Shinjo, S. K.; Cilli, E. M.; Sale, C.; Gualano, B.; Otaduy, M. C.; Artioli, G. G.

10.1101/568923 — physiology — Posted on 2019-06-11

2006 Zebrafish larvae as a model system for systematic characterization of drugs and genes in dyslipidemia and atherosclerosis

Bandaru, M. K.; Emmanouilidou, A.; Ranefall, P.; von der Heyde, B.; Mazzaferro, E.; Klingstroem, T.; Masiero, M.; Dethlefsen, O.; Ledin, J.; Larsson, A.; Brooke, H. L.; Wahlby, C.; Ingelsson, E.; den Hoed, M.

10.1101/502674 — genomics — Posted on 2019-06-11

2007 A one-dimensional individual-based mechanical model of cell movement in heterogeneous tissues and its coarse-grained approximation

Murphy, R.; Buenzli, P.; Baker, r. E.; Simpson, M. J.

10.1101/485276 — biophysics — Posted on 2019-06-11

2008 deSALT: fast and accurate long transcriptomic read alignment with de Bruijn graph-based index

Liu, B.; Liu, Y.; Li, J.; Guo, H.; Zang, T.; Wang, Y.

10.1101/612176 — bioinformatics — Posted on 2019-06-11

2009 Genotype-free demultiplexing of pooled single-cell RNA-Seq

Xu, J.; Falconer, C.; Nguyen, Q.; Crawford, J.; McKinnon, B. D.; Mortlock, S.; Senabouth, A.; Andersen, S.; Montgomery, G. W.; Powell, J.; Coin, L.

10.1101/570614 — bioinformatics — Posted on 2019-06-11

2010 Cryo-EM structures capturing the entire transport cycle of the P4-ATPase flippase

Hiraizumi, M.; Yamashita, K.; Nishizawa, T.; Nureki, O.

10.1101/666321 — biochemistry — Posted on 2019-06-11

2011 Butterfly abundance declines over 20 years of systematic monitoring in Ohio, USA

Wepprich, T.; Adrion, J.; Ries, L.; Wiedmann, J.; Haddad, N.

10.1101/613786 — ecology — Posted on 2019-06-11

2012 Polarized light information modulates sensorimotor decision making in goldfish

Otero Coronel, S. J.; Beron de Astrada, M.; Medan, V.

10.1101/488544 — neuroscience — Posted on 2019-06-11

2013 Pooled clone collections by multiplexed CRISPR/Cas12a-assisted gene tagging in yeast

Buchmuller, B. C.; Herbst, K.; Meurer, M.; Kirrmaier, D.; Sass, E.; Levy, E. D.; Knop, M.

10.1101/476804 — genomics — Posted on 2019-06-11

2014 Gut microbial dysbiosis in individuals with Sjögren’s disease

Mendez, R.; Watane, A.; Farhangi, M.; Cavuoto, K. M.; Leith, T.; Budree, S.; Galor, A.; Banerjee, S.

10.1101/645739 — physiology — Posted on 2019-06-11

2015 Low Dose Ionizing Radiation Strongly Stimulates Insertional Mutagenesis in a γH2AX Dependent Manner

Zelensky, A. N.; Schoonakker, M.; Brandsma, I.; Tijsterman, M.; van Gent, D. C.; Essers, J.; Kanaar, R.

10.1101/614040 — molecular biology — Posted on 2019-06-11

2016 Robust Cancer Mutation Detection with Deep Learning Models Derived from Tumor-Normal Sequencing Data

Sahraeian, S. M. E.; Fang, L. T.; Mohiyuddin, M.; Hong, H.; Xiao, W.

10.1101/667261 — genomics — Posted on 2019-06-11

2017 A robust benchmark for germline structural variant detection

Zook, J. M.; Hansen, N. F.; Olson, N. D.; Chapman, L. M.; Mullikin, J. C.; Xiao, C.; Sherry, S.; Koren, S.; Phillippy, A. M.; Boutros, P. C.; Sahraeian, S. M. E.; Huang, V.; Rouette, A.; Alexander, N.; Mason, C. C.; Hajirasouliha, I. C.; Ricketts, C. C.; Lee, J.; Tearle, R.; Fiddes, I. T.; Barrio, A. M.; Wala, J.; Carroll, A.; Ghaffari, N.; Rodriguez, O. L.; Bashir, A.; Jackman, S.; Farrell, J. J.; Wenger, A. M.; Alkan, C.; Soylev, A.; Schatz, M. C.; Garg, S.; Church, G.; Marschall, T.; Chen, K.; Fan, X.; English, A. C.; Rosenfeld, J. D.; Zhou, W.; Mills, R. E.; Sage, J. M.; Davis, J. R.; Kais

10.1101/664623 — genomics — Posted on 2019-06-11

2018 DOT: Gene-set analysis by combining decorrelated association statistics

Vsevolozhskaya, O.; Shi, M.; Hu, F.; Zaykin, D.

10.1101/665133 — genetics — Posted on 2019-06-11

2019 Serum-free culture system for spontaneous human mesenchymal stem cell spheroids formation

Dong, G.; Wang, S.; Ge, Y.; Zhao, W.; Deng, Q.; Cao, Q.; Wang, Q.; Shang, Z.; Ouyang, W.; Li, J.; Liu, C.; Tang, J.; Gu, Y.

10.1101/666313 — cell biology — Posted on 2019-06-11

2020 Transcriptomic signatures of brain regional vulnerability to Parkinson’s disease

Keo, A.; Mahfouz, A.; Ingrassia, A. M. T.; Meneboo, J.-P.; Villenet, C.; Mutez, E.; Comptdaer, T.; Lelieveldt, B. P. F.; Figeac, M.; Chartier-Harlin, M.-C.; van de Berg, W. D. J.; van Hilten, J. J.; Reinders, M. J. T.

10.1101/664771 — neuroscience — Posted on 2019-06-11

2021 Spectral Graph Theory of Brain Oscillations

Raj, A.; Cai, C.; Xie, X.; Palacios, E.; Owen, J.; Mukherjee, P.; Nagarajan, S.

10.1101/589176 — neuroscience — Posted on 2019-06-11

2022 Zebrafish spinal cord repair is accompanied by transient tissue stiffening

Möllmert, S.; Kharlamova, M.; Hoche, T.; Taubenberger, A. V.; Abuhattum, S.; Kuscha, V.; Kurth, T.; Brand, M.; Guck, J.

10.1101/666032 — biophysics — Posted on 2019-06-11

2023 Immunoglobulin heavy chains are sufficient to determine most B cell clonal relationships

Zhou, J. Q.; Kleinstein, S. H.

10.1101/665760 — immunology — Posted on 2019-06-11

2024 The rapid divergence of the Antarctic crinoid species Promachocrinus kerguelensis

Ben Chehida, Y.; Eleaume, M.; Gallut, C.; Achaz, G.

10.1101/666248 — evolutionary biology — Posted on 2019-06-11

2025 Ovarian cancer G protein-coupled receptor 1 in-hibits A549 cells Migration through Casein kinase 2α intronless gene

Sharma, A. L.; Meeitei, P. M.; Singh, N. T.; Singh, T. R.; Shanjukumar Singh, L.

10.1101/556720 — cancer biology — Posted on 2019-06-11

2026 CRISPR editing of sftb-1/SF3B1 in C. elegans allows the identification of synthetic interactions with cancer-related mutations and the chemical inhibition of splicing

Serrat, X.; Kukhtar, D.; Cornes, E.; Esteve-Codina, A.; Benlloch, H.; Cecere, G.; Ceron, J.

10.1101/634634 — cancer biology — Posted on 2019-06-11

2027 Generalizing to generalize: when (and when not) to be compositional in task structure learning

Franklin, N. T.; Frank, M. J.

10.1101/547406 — neuroscience — Posted on 2019-06-11

2028 Learning to evoke complex motor outputs with spatiotemporal neurostimulation using a hierarchical and adaptive optimization algorithm.

Laferriere, S.; Bonizzato, M.; Dancause, N.; Lajoie, G.

10.1101/662072 — neuroscience — Posted on 2019-06-11

2029 Genetic risk underlying psychiatric and cognitive symptoms in Huntington’s Disease

Ellis, N.; Tee, A.; McAllister, B.; Massey, T.; McLauchlan, D.; Stone, T.; Correia, K.; Loupe, J.; Kim, K.-H.; Barker, D.; Hong, E. P.; Chao, M. J.; Long, J. D.; Lucente, D.; Vonsattel, J. P. G.; Mouro Pinto, R.; Elneel, K. A.; Ramos, E. M.; Mysore, J. S.; Gillis, T.; Wheeler, V. C.; Medway, C.; Hall, L.; Kwak, S.; Sampaio, C.; Ciosi, M.; Maxwell, A.; Chatzi, A.; Monckton, D.; Orth, M.; Landwehrmeyer, G. B.; Paulsen, J. S.; Shoulson, I.; Myers, R.; Duijn, E. v.; Rickards, H.; MacDonald, M.; Lee, J.-M.; Gusella, J. F.; Jones, L.; Holmans, P.

10.1101/639658 — genetics — Posted on 2019-06-11

2030 Species specificity and intraspecific variation in the chemical profiles of Heliconius butterflies across a large geographic range

Darragh, K.; Montejo-Kovacevich, G.; Kozak, K. M.; Morrison, C. R.; Figueiredo, C. M. E.; Ready, J. S.; Salazar, C.; Linares, M.; Byers, K. J. R. P.; Merrill, R. M.; McMillan, W. O.; Schulz, S.; Jiggins, C. D.

10.1101/573469 — evolutionary biology — Posted on 2019-06-11

2031 Spatiotemporal analysis reveals significant overlap of key proepicardial markers in the developing murine heart

Lupu, I.-E.; Redpath, A.; Smart, N.

10.1101/666610 — developmental biology — Posted on 2019-06-11

2032 FALCONET: an R package to accelerate automatic visualisation of genome scale metabolic models

Lu, H.; Zhu, Z.; Kerkhoven, E. J.; Nielsen, J.

10.1101/662056 — systems biology — Posted on 2019-06-11

2033 Results dissemination from clinical trials conducted at German university medical centres was delayed and incomplete

Wieschowski, S.; Riedel, N.; Wollmann, K.; Kahrass, H.; Mueller-Ohlraun, S.; Schuermann, C.; Kelley, S.; Kszuk, U.; Siegerink, B.; Dirnagl, U.; Meerpohl, J.; Strech, D.

10.1101/467746 — scientific communication and education — Posted on 2019-06-11

2034 Relationship Between Motor Capacity of the Contralesional and Ipsilesional Hand Depends on the Side of Stroke

Varghese, R.; Winstein, C. J.

10.1101/635136 — neuroscience — Posted on 2019-06-11

2035 Neuron-specific knockouts indicate the importance of network communication to Drosophila rhythmicity

Schlichting, M.; Diaz, M. M.; Xin, J.; Rosbash, M.

10.1101/639146 — neuroscience — Posted on 2019-06-11

2036 Domain-specific quantification of prion protein in cerebrospinal fluid by targeted mass spectrometry

Minikel, E. V.; Kuhn, E.; Cocco, A. R.; Vallabh, S. M.; Hartigan, C. R.; Reidenbach, A. G.; Safar, J. G.; Raymond, G. J.; McCarthy, M. D.; O'Keefe, R.; Llorens, F.; Zerr, I.; Capellari, S.; Parchi, P.; Schreiber, S. L.; Carr, S. A.

10.1101/591487 — neuroscience — Posted on 2019-06-11

2037 A versatile method for circulating cell-free DNA methylome profiling by reduced representation bisulfite sequencing

De Koker, A.; Van Paemel, R.; De Wilde, B.; De Preter, K.; Callewaert, N.

10.1101/663195 — genomics — Posted on 2019-06-11

2038 Minimal requirements for membrane adaptation of the bacterial model organism M. extorquens

Chwastek, G.; Surma, M. A.; Rizk, S.; Grosser, D.; Lavrynenko, O.; Rucinska, M.; Jambor, H.; Saenz, J. P.

10.1101/650390 — biochemistry — Posted on 2019-06-11

2039 A statistical framework to assess cross-frequency coupling while accounting for modeled confounding effects

Nadalin, J. K.; Martinet, L.-E.; Blackwood, E.; Lo, M.-C.; Widge, A. S.; Cash, S. S.; Eden, U.; Kramer, M. A.

10.1101/519470 — neuroscience — Posted on 2019-06-11

2040 NEURAL POPULATION DYNAMICS IN MOTOR CORTEX ARE DIFFERENT FOR REACH AND GRASP

Suresh, A. K.; Goodman, J. M.; Okorokova, E. V.; Kaufman, M. T.; Hatsopoulos, N. G.; Bensmaia, S. J.

10.1101/667196 — neuroscience — Posted on 2019-06-11

2041 Serial horizontal transfer of vitamin-biosynthetic genes enables the establishment of new nutritional symbionts in aphids’ di-symbiotic systems

Manzano-Marin, A.; Coeur d'acier, A.; Clamens, A.-L.; Orvain, C.; Cruaud, C.; Barbe, V.; Jousselin, E.

10.1101/556274 — genomics — Posted on 2019-06-11

2042 How phenotypic convergence arises in experimental evolution

Simoes, P.; Fragata, I.; Santos, J.; Santos, M. A.; Santos, M.; Rose, M. R.; Matos, M.

10.1101/579524 — evolutionary biology — Posted on 2019-06-11

2043 Computational Saturation Mutagenesis to predict structural consequences of systematic mutations on protein stability and rifampin interactions in the β subunit of RNA polymerase in Mycobacterium leprae

Vedithi, S. C.; Rodrigues, C. H. M.; Portelli, S.; Skwark, M. J.; Das, M.; Ascher, D. B.; Blundell, T. L.; Malhotra, S.

10.1101/654095 — bioinformatics — Posted on 2019-06-11

2044 Testing for correlation between traits under directional evolution

Royer-Carenzi, M.; Didier, G.

10.1101/566349 — evolutionary biology — Posted on 2019-06-11

2045 Acute degradation reveals that Ran-Importin network dynamically polarizes and maintains HURP, but not NuMA, on human mitotic spindle

Tsuchiya, K.; Hayashi, H.; Nishina, M.; Okumura, M.; Kanemaki, M.; Goshima, G.; Kiyomitsu, T.

10.1101/473538 — cell biology — Posted on 2019-06-11

2046 ForestQC: quality control on genetic variants from next-generation sequencing data using random forest

Li, J.; Jew, B.; Zhan, L.; Hwang, S.; Coppola, G.; Freimer, N. B.; Sul, J. H.

10.1101/444828 — bioinformatics — Posted on 2019-06-11

2047 Energetic substrate availability regulates synchronous activity in an excitatory neural network

Tourigny, D. S.; Abdul Karim, M. K.; Echeveste, R.; Kotter, M. R.; O'Neill, J. S.

10.1101/363671 — neuroscience — Posted on 2019-06-11

2048 A systematic survey of regional multitaxon biodiversity: evaluating strategies and coverage

Brunbjerg, A. K.; Bruun, H. H.; Broendum, L.; Classen, A. T.; Dalby, L.; Fog, K.; Froeslev, T. G.; Goldberg, I.; Hansen, A. J.; Hansen, M. D. D.; Hoeye, T. T.; Illum, A. A.; Laessoee, T.; Mak, S. S. T.; Newman, G.; Nielsen, I. B.; Pietroni, C.; Skipper, L.; Soechting, U.; Ejrnaes, R.

10.1101/158030 — ecology — Posted on 2019-06-11

2049 The biggest losers: Habitat isolation deconstructs complex food webs from top to bottom

Ryser, R.; Häussler, J.; Stark, M.; Brose, U.; Rall, B.; Guill, C.

10.1101/439190 — ecology — Posted on 2019-06-11

2050 Environmental heterogeneity drives tsetse fly population dynamics and control

Cecilia, H.; Arnoux, S.; Picault, S.; Dicko, A.; Seck, M. T.; Sall, B.; Bassene, M.; Vreysen, M.; Pagabeleguem, S.; Bance, A.; Bouyer, J.; Ezanno, P.

10.1101/493650 — ecology — Posted on 2019-06-11

2051 The Differential Roles of the Adaptor Proteins Nck1 and Nck2 in Shear Stress-Induced Endothelial Activation.

Alfaidi, M.; Acosta, C. H.; Lindquist, J. M.; Cockerham, E. D.; Orr, A. W.

10.1101/668129 — pathology — Posted on 2019-06-11

2052 Temporal quantitative proteomics of protein translation and phosphorylation in synaptic plasticity

van Gelder, C.; Penning, R.; Catsburg, L.; Hoogenraad, C.; MacGillavry, H. D.; Altelaar, M.

10.1101/668434 — neuroscience — Posted on 2019-06-11

2053 How neural circuits achieve and use stable dynamics

Kozachkov, L.; Lundqvist, M.; Slotine, J.-J.; Miller, E. K.

10.1101/668152 — neuroscience — Posted on 2019-06-11

2054 Activation or inhibition of PPARα-mediated fatty acid β-oxidation does not active cardiomyocyte proliferation in normal or infarcted adult mice

Roy, R.; Leigh, T.; Gao, E.; Zhang, X.; Tian, Y.

10.1101/667964 — cell biology — Posted on 2019-06-11

2055 Clonal evaluation of early onset prostate cancer by expression profiling of ERG, SPINK1, ETV1, and ETV4 on whole mount radical prostatectomy tissue

Lu, Z.; Williamson, S.; Carskadon, S.; Arachchige, P. D.; Dhamdhere, G.; Schultz, D.; Stricker, H.; Peabody, J. O.; Jeong, W.; Chitale, D.; Bismar, T.; Rogers, C.; Menon, M.; Gupta, N. S.; Palanisamy, N.

10.1101/667832 — pathology — Posted on 2019-06-11

2056 A chromosome-level assembly of the Atlantic herring - detection of a supergene and other signals of selection

Pettersson, M. E.; Rochus, C. M.; Han, F. E.; Chen, J.; Hill, J.; Wallerman, O.; Fan, G.; Hong, X.; Xu, Q.; Zhang, H.; Liu, S.; Liu, X.; Haggerty, L.; Hunt, T.; Martin, F. J.; Flicek, P.; Bunikis, I.; Folkvord, A.; Andersson, L.

10.1101/668384 — genomics — Posted on 2019-06-11

2057 Long-term experimental evolution reveals purifying selection on piRNA-mediated control of transposable element expression

Bergthorrson, U.; Singh, S.; Konrad, A.; Belicard, T.; Beltran, T.; Katju, V.; Sarkies, P.

10.1101/666693 — molecular biology — Posted on 2019-06-11

2058 Functional classification of noncoding RNAs associated with distinct histone modifications by PIRCh-seq

Fang, J.; Ma, Q.; Chu, C.; Huang, B.; Li, L.; Cai, P.; Batista, P. J.; Tolentino, K. E. M.; Xu, J.; Li, R.; Du, P.; Qu, K.; Chang, H.

10.1101/667881 — cell biology — Posted on 2019-06-11

2059 Cell-free prototyping of AND-logic gates based on heterogeneous RNA activators

Lehr, F.-X.; Hanst, M.; Vogel, M.; Kremer, J.; Göringer, H. U.; Beatrix, S.; Koeppl, H.

10.1101/661561 — synthetic biology — Posted on 2019-06-11

2060 The Eya1 phosphatase mediates Shh-driven symmetric cell division of cerebellar granule cell precursors

Merk, D. J.; Zhou, P.; Cohen, S. M.; Pazyra-Murphy, M. F.; Hwang, G. H.; Rehm, K. J.; Alfaro, J.; Zhao, X.; Park, E.; Xu, P.-X.; Chan, J. A.; Eck, M. J.; Nazemi, K. J.; Segal, R. A.

10.1101/668277 — neuroscience — Posted on 2019-06-11

2061 A high-quality genome assembly from short and long reads for the non-biting midge Chironomus riparius (Diptera)

Schmidt, H.; Waldvogel, A.-M.; Hellmann, S. L.; Feldmeyer, B.; Hankeln, T.; Pfenninger, M.

10.1101/659433 — genomics — Posted on 2019-06-11

2062 The Frizzled-ligand Norrin acts as a tumour suppressor linking oncogenic RAS signalling to p53

Sulli, G.; D'Elia, E.; Moroni, M. C.

10.1101/666925 — cancer biology — Posted on 2019-06-11

2063 The first days in the life of naïve human B-lymphocytes infected with Epstein-Barr virus

Pich, D.; Mrozek-Gorska, P.; Bouvet, M.; Sugimoto, A.; Akidil, E.; Grundhoff, A.; Hamperl, S.; Ling, P.; Hammerschmidt, W.

10.1101/666297 — microbiology — Posted on 2019-06-11

2064 Allele-specific single-cell RNA sequencing reveals different architectures of intrinsic and extrinsic gene expression noises

Sun, M.; Zhang, J.

10.1101/667840 — bioinformatics — Posted on 2019-06-11

2065 Sensory neurogenesis depends on vascular-neuronal filopodia contacts and blood flow

Taberner, L.; Banon, A.; Alsina, B.

10.1101/667519 — developmental biology — Posted on 2019-06-11

2066 Wampa is a dynein subunit required for axonemal assembly and male fertility in Drosophila

Bauerly, E.; Yi, K.; Gibson, M. C.

10.1101/668012 — developmental biology — Posted on 2019-06-11

2067 The ciliary membrane of polarized epithelial cells stems from a midbody remnant-associated membrane patch with condensed nanodomains

Bernabe-Rubio, M.; Bosch-Fortea, M.; Garcia, E.; Bernardino de la Serna, J.; Alonso, M. A.

10.1101/667642 — cell biology — Posted on 2019-06-11

2068 Analytical treatment interruption after short-term anti-retroviral therapy in a postnatally SHIV infected infant rhesus macaque model

Goswami, R.; Nelson, A. N.; Tu, J. J.; Dennis, M.; Feng, L.; Kumar, A.; Mangold, J.; Mangan, R. J.; Mattingly, C.; Curtis, A. D.; Obregon-Perko, V.; Mavigner, M.; Pollara, J.; Shaw, G. M.; Bar, K. J.; Chahroudi, A.; De Paris, K.; Chan, C.; Van Rompay, K. K. A.; Permar, S. R.

10.1101/667139 — immunology — Posted on 2019-06-11

2069 The discriminant pattern of pleural fluid inflammatory mediators between tuberculosis and other causes of exudative pleural effusion

Lisboa, V. d. C.; Correa, R. d. S.; Ribeiro-Alves, M.; Lopes, I. R.; Mafort, T. T.; Santos, A. P.; Amadeu, T. P.; Rufino, R.; Rodrigues, L. S.

10.1101/667360 — immunology — Posted on 2019-06-11

2070 Decoupling the effects of nutrition, age and behavioral caste on honey bee physiology and immunity

Corona, M.; Branchiccela, B.; Madella, S.; Chen, Y.; Evans, J. D.

10.1101/667931 — molecular biology — Posted on 2019-06-11

2071 Stable integrant-specific differences in bimodal HIV-1 expression patterns revealed by high-throughput analysis

Read, D. F.; Atindaana, E.; Pyaram, K.; Yang, F.; Emery, S.; Cheong, A.; Nakama, K. R.; Larragoite, E.; Battivelli, E.; Verdin, E.; Planelles, V.; Chang, C.-H.; Telesnitsky, A.; Kidd, J. M.

10.1101/666941 — microbiology — Posted on 2019-06-11

2072 Interkinetic nuclear movements promote apical expansion in pseudostratified epithelia at the expense of apicobasal elongation

Ferreira, M. A.; Despin-Guitard, E.; Duarte, F.; Degond, P.; Theveneau, E.

10.1101/666867 — developmental biology — Posted on 2019-06-11

2073 Design of biochemical pattern forming systems from minimal motifs

Glock, P.; Brauns, F.; Halatek, J.; Frey, E.; Schwille, P.

10.1101/666362 — biophysics — Posted on 2019-06-11

2074 Staphylococcus epidermidis metabolic adaptation and biofilm formation in response to varying oxygen.

Pedroza-Davila, U.; Uribe-Alvarez, C.; Morales-Garcia, L.; Espinoza-Simon, E.; Muhlia Almazan, A.; Chiquete-Felix, N.; Uribe-Carvajal, S.

10.1101/665356 — physiology — Posted on 2019-06-11

2075 Adding MASP1 to the lectin pathway - leprosy association puzzle: hints from gene polymorphisms and protein levels.

Weinschutz Mendes, H. C.; Boldt, A. W.; Stahlke, E. R. S.; Jensenius, J. C.; Thiel, S.; Messias-Reason, I. J. T.

10.1101/666909 — immunology — Posted on 2019-06-11

2076 Autophagy-related genes atg7 and beclin1 are essential for energy metabolism and survival during the larval-to-juvenile transition stage of zebrafish

Mawed, S. A.; Zhang, J.; Ren, F.; Mei, J.

10.1101/666883 — genetics — Posted on 2019-06-11

2077 Uncovering thousands of new HLA antigens and phosphopeptides with deep learning-based sequence-mask-search de novo peptide sequencing framework

Karunratanakul, K.; Tang, H.-Y.; Speicher, D. W.; Chuangsuwanich, E.; Sriswasdi, S.

10.1101/667527 — bioinformatics — Posted on 2019-06-11

2078 PRC1 catalytic activity is central to Polycomb system function.

Blackledge, N. P.; Fursova, N. A.; Kelley, J. R.; Huseyin, M. K.; Feldmann, A.; Klose, R. J.

10.1101/667667 — molecular biology — Posted on 2019-06-11

2079 Assessment of two immunoassays for detection of IgM antibodies to scrub typhus using a serum panel

Elangovan, D.; Perumalla, S.; Rose, W.; Philip Verghese, V.; Mahasampath, G.; Antony Jude Prakash, J.

10.1101/667410 — microbiology — Posted on 2019-06-11

2080 Wild pollinator activities negatively related to honey bee colony densities in urban context

Ropars, L.; Dajoz, I.; Fontaine, C.; Muratet, A.; Geslin, B.

10.1101/667725 — ecology — Posted on 2019-06-11

2081 Alternative transcription cycle for bacterial RNA polymerase

Harden, T. T.; Herlambang, K. S.; Chamberlain, M.; Lalanne, J.-B.; Wells, C. D.; Li, G.-W.; Landick, R.; Hochschild, A.; Kondev, J.; Gelles, J.

10.1101/663534 — biophysics — Posted on 2019-06-11

2082 Multi-scale dynamical modelling of T-cell development from an early thymic progenitor state to lineage commitment

Olariu, V.; Yui, M.; Krupinski, P.; Zhou, W.; Deichmann, J.; Rothenberg, E. V.; Peterson, C.

10.1101/667709 — systems biology — Posted on 2019-06-11

2083 Identification of TMEM206 proteins as pore of ASOR acid-sensitive chloride channels

Ullrich, F.; Blin, S.; Lazarow, K.; Daubitz, T.; von Kries, J.-P.; Jentsch, T. J.

10.1101/667600 — physiology — Posted on 2019-06-11

2084 An intact keratin network is crucial for mechanical integrity and barrier function in keratinocyte cell sheets

Karsch, S.; Buechau, F.; Magin, T. M.; Janshoff, A.

10.1101/661462 — biophysics — Posted on 2019-06-11

2085 Cryo-EM structures capturing the entire transport cycle of the P4-ATPase flippase

Hiraizumi, M.; Yamashita, K.; Nishizawa, T.; Nureki, O.

10.1101/666321 — biochemistry — Posted on 2019-06-11

2086 A robust metaproteomics pipeline for a holistic taxonomic and functional characterization of microbial communities from marine particles

Schultz, D.; Zuehlke, D.; Bernhardt, J.; Francis, T. B.; Albrecht, D.; Hirschfeld, C.; Markert, S.; Riedel, K.

10.1101/667428 — microbiology — Posted on 2019-06-11

2087 Impact of recreational fisheries on aquatic and riparian biodiversity in artificial lake ecosystems: implications for conservation

Nikolaus, R.; Schafft, M.; Maday, A.; Wolter, C.; Arlinghaus, R.

10.1101/667493 — ecology — Posted on 2019-06-11

2088 Morphological differences between phyllosoma larvae from the midwestern and eastern Pacific populations of the pronghorn spiny lobster Panulirus penicillatus

Matsuda, H.; Sakai, M.; Tanagimoto, T.; Chow, S.

10.1101/667469 — ecology — Posted on 2019-06-11

2089 High-throughput proteomic analysis of FFPE tissue samples facilitates tumor stratification

Zhu, Y. J.; Weiss, T.; Zhang, Q.; Sun, R.; Wang, B.; Wu, Z.; Zhong, Q.; Yi, X.; Gao, H.; Cai, X.; Ruan, G.; Zhu, T.; Xu, C.; Lou, S.; Yu, X.; Gillet, L.; Blattmann, P.; Saba, K.; Fankhauser, C.; Schmid, M.; Rutishauser, D.; Ljubicic, J.; Christiansen, A.; Fritz, C.; Rupp, N.; Poyet, C.; Rushing, E.; Weller, M.; Roth, P.; Haralambieva, E.; Hofer, S.; Chen, C.; Jochum, W.; Gao, X.; Teng, X.; Chen, L.; Wild, P.; Aebersold, R.; Guo, T.

10.1101/667394 — biochemistry — Posted on 2019-06-11

2090 Constant Infusion Radiotracer Administration for High Temporal Resolution Positron Emission Tomography (PET) of the Human Brain: Application to -Fluorodexoyglucose PET (FDG-PET)

Jamadar, S. D.; Ward, P. G.; Carey, A.; McIntyre, R.; Parkes, L.; Sasan, D.; Fallon, J.; Li, S.; Chen, Z.; Egan, G.

10.1101/667352 — neuroscience — Posted on 2019-06-11

2091 SRSF3 confers selective processing of miR-17-92 cluster to promote tumorigenic properties in colorectal cancer

Ratnadiwakara, M.; Engel, R.; Jarde, T.; McMurrick, P. J.; Abud, H. E.; Anko, M.-L.

10.1101/667295 — cell biology — Posted on 2019-06-11

2092 Rab11b-mediated integrin recycling promotes brain metastatic adaptation and outgrowth

Howe, E. N.; Burnette, M. D.; Justice, M. E.; Clancy, J. W.; Guldner, I. H.; Schnepp, P. M.; Hendrick, V.; Aryal, U. K.; Specht, A. T.; Li, J.; D'Souza-Schorey, C.; Zartman, J. J.; Zhang, S.

10.1101/666750 — cancer biology — Posted on 2019-06-11

2093 Evolving neoantigen profiles in colorectal cancers with DNA repair defects

Rospo, G.; Lorenzato, A.; Amirouchene-Angelozzi, N.; Magri, A.; Cancelliere, C.; Corti, G.; Negrino, C.; Amodio, V.; Montone, M.; Bartolini, A.; Barault, L.; Novara, L.; Isella, C.; Medico, E.; Bertotti, A.; Trusolino, L.; Germano, G.; Di Nicolantonio, F.; Bardelli, A.

10.1101/667097 — cancer biology — Posted on 2019-06-11

2094 DEEP LEARNING-ENABLED POINT-OF-CARE SENSING USING MULTIPLEXED PAPER-BASED SENSORS

Ballard, Z.; Joung, H.-A.; Goncharov, A.; Liang, J.; Nugroho, K.; Di Carlo, D.; Garner, O. B.; Ozcan, A.

10.1101/667436 — bioengineering — Posted on 2019-06-11

2095 Detecting weak signals by combining small P-values in genetic association studies

Vsevolozhskaya, O.; Hu, F.; Zaykin, D.

10.1101/667238 — genetics — Posted on 2019-06-11

2096 Socioeconomic Differentials in Hypertension based on JNC7 and ACC/AHA 2017 Guidelines Mediated by Body Mass Index: Evidence from Nepal Demographic and Health Survey

Rana, J.; Ahmmad, Z.; Sen, K. K.; Bista, S.; Islam, R. M.

10.1101/667899 — epidemiology — Posted on 2019-06-11

2097 Neural correlates of exceptional memory ability in SuperAgers: A multimodal approach using FDG-PET, PIB-PET, and MRI

10.1101/666438 — neuroscience — Posted on 2019-06-11

2098 RATIONAL DECISION ON THE USE OF ANTIBIOTICS DURING THE DRY PERIOD IN DAIRY COWS

LOPES, L.; LIMA, A.

10.1101/667873 — microbiology — Posted on 2019-06-11

2099 Health care seeking behavior and associated factor among mothers/caregivers of under-five children with acute diarrhea in Dangila zuria Woreda, North west Ethiopia

Nega, B.; Bogale, K. A.; Nigussie, Z. M.

10.1101/667923 — epidemiology — Posted on 2019-06-11

2100 Multi-objective optimisation of material properties and strut geometry for poly(L-lactic acid) coronary stents using response surface methodology

Blair, R.; Dunne, N.; Lennon, A.; Menary, G.

10.1101/667915 — bioengineering — Posted on 2019-06-11

2101 Teaching R in the undergraduate ecology classroom: approaches, lessons learned, and recommendations

Auker, L. A.; Barthelmess, E. L.

10.1101/666768 — scientific communication and education — Posted on 2019-06-11

2102 Intracerebral transfection of anti-rabies virus antibodies is an effective therapy for rabies

Agostinho, W. C.; Brandao, P. E.

10.1101/667949 — molecular biology — Posted on 2019-06-11

2103 Markers of BRCAness in breast cancer

Bodily, W. R.; Shirts, B. H.; Walsh, T.; Gulsuner, S.; King, M.-C.; Parker, A.; Roosan, M.; Piccolo, S. R.

10.1101/662874 — cancer biology — Posted on 2019-06-11

2104 Molecular and cellular determinants of motor asymmetry in zebrafish

Horstick, E. J.; Bayleyen, Y.; Burgess, H. A.

10.1101/666594 — neuroscience — Posted on 2019-06-11

2105 Perception of whole-body motion during balance perturbations is impaired in Parkinson’s disease and is associated with balance impairment

Bong, S.; McKay, J. L.; Factor, S. A.; Ting, L. H.

10.1101/666636 — neuroscience — Posted on 2019-06-11

2106 Prenatal Diagnosis of Fetuses with Increased Nuchal Translucency by Genome Sequencing Analysis

Choy, K. W.; Wang, H.; Shi, M.; Chen, J.; Yang, Z.; Zhang, R.; Yan, H.; Wang, Y.; Chen, S.; Chau, M. H. K.; Cao, Y.; Chan, O. Y.; Kwok, Y. K.; Zhu, Y.; Chen, M.; Leung, T. Y.; Dong, Z.

10.1101/667311 — genomics — Posted on 2019-06-11

2107 Integrated Identification of Disease Specific Pathways Using Multi-omics data

Lu, Y.; Chang, Y.-T.; Hoffman, E. P.; Yu, G.; Herrington, D. M.; Clarke, R.; Wu, C.-T.; Chen, L.; Wang, Y.

10.1101/666065 — bioinformatics — Posted on 2019-06-11

2108 Synonymous codon substitutions perturb co-translational protein folding and significantly impair cell fitness

Walsh, I. M.; Bowman, M. A.; Clark, P. L.

10.1101/666552 — biochemistry — Posted on 2019-06-11

2109 Arabidopsis Proteome and the Mass Spectral Assay Library

Zhang, H.; Liu, P.; Guo, T.; Zhao, H.; Bensaddek, D.; Aebersold, R.; Xiong, L.

10.1101/665547 — plant biology — Posted on 2019-06-11

2110 Fluoxetine-induced dematuration of hippocampal neurons and adult cortical neurogenesis in the common marmoset

Ohira, K.; Hagihara, H.; Miwa, M.; Nakamura, K.; Miyakawa, T.

10.1101/661025 — neuroscience — Posted on 2019-06-11

2111 NEURAL POPULATION DYNAMICS IN MOTOR CORTEX ARE DIFFERENT FOR REACH AND GRASP

Suresh, A. K.; Goodman, J. M.; Okorokova, E. V.; Kaufman, M. T.; Hatsopoulos, N. G.; Bensmaia, S. J.

10.1101/667196 — neuroscience — Posted on 2019-06-11

2112 Integrative analysis reveals RNA G-Quadruplexes in UTRs are selectively constrained and enriched for functional associations

Lee, D. S.; Ghanem, L. R.; Barash, Y.

10.1101/666842 — genomics — Posted on 2019-06-11

2113 Nuclear genetic regulation of human mitochondrial RNA modification

Ali, A. T.; Idaghdour, Y.; Hodgkinson, A.

10.1101/666339 — genomics — Posted on 2019-06-11

2114 Multiple roles of the polycistronic gene tarsaless/mille-pattes/polished-rice during embryogenesis of the kissing bug Rhodnius prolixus

Tobias-Santos, V.; Guerra-Almeida, D.; Mury, F.; Ribeiro, L.; Berni, M.; Araujo, H. M.; Logullo, C.; Feitosa, N. M.; Menezes, J.; Costa, E. P.; Nunes-da-Fonseca, R.

10.1101/667022 — developmental biology — Posted on 2019-06-11

2115 Accurate detection of non-proliferative diabetic retinopathy in optical coherence tomography images using convolutional neural networks

Ghazal, M.; Ali, S.; Mahmoud, A.; Shalaby, A.; El-Baz, A. S.

10.1101/667865 — bioengineering — Posted on 2019-06-11

2116 A high-content in vivo screen to identify microRNA epistasis in the repopulating mouse liver

Zahm, A. M.; Wang, A. W.; Wang, Y. J.; Schug, J.; Wangensteen, K. J.; Kaestner, K. H.

10.1101/664847 — systems biology — Posted on 2019-06-11

2117 Cancer Exacerbates Chemotherapy Induced Sensory Neuropathy

Housley, S.; Nardelli, P.; Carrasco, D.; Pfahl, E.; Matyunina, L.; McDonald, J. F.; Cope, T. C.

10.1101/667105 — neuroscience — Posted on 2019-06-11

2118 A data-driven approach to optimising the encoding for multi-shell diffusion MRI with application to neonatal imaging

Tournier, J.-D.; Christiaens, D.; Hutter, J.; Price, A.; Cordero-Grande, l.; Hughes, E.; Bastiani, M.; Sotiropoulos, s.; Smith, S. M.; Rueckert, D.; Counsell, S. J.; Edwards, A. D.; Hajnal, J. V.

10.1101/661348 — neuroscience — Posted on 2019-06-11

2119 Horizontal gene transfer rate is not the primary determinant of observed antibiotic resistance frequencies in Streptococcus pneumoniae

Lehtinen, S. J.; Chewapreecha, C.; Hanage, W. P.; Lipsitch, M. J.; Croucher, N. J.; Bentley, S. D.; Turner, P.; Fraser, C.; Mostowy, R. J.

10.1101/656751 — evolutionary biology — Posted on 2019-06-11

2120 Multivalent interaction of ESCO2 with the replication machinery is required for cohesion

Bender, D.; da Silva, E. M. L.; Chen, J.; Poss, A.; Gawey, L.; Rulon, Z.; Rankin, S.

10.1101/666115 — cell biology — Posted on 2019-06-11

2121 Serum-free culture system for spontaneous human mesenchymal stem cell spheroids formation

Dong, G.; Wang, S.; Ge, Y.; Zhao, W.; Deng, Q.; Cao, Q.; Wang, Q.; Shang, Z.; Ouyang, W.; Li, J.; Liu, C.; Tang, J.; Gu, Y.

10.1101/666313 — cell biology — Posted on 2019-06-11

2122 PROTEINATOR: Web-UI exploring repurposing hypotheses of PROTEIN InhibiTORs based on protein interactions

Tangadu, S.; Shankar, S.; Varanasi, B. V.; Athri, P.

10.1101/667329 — bioinformatics — Posted on 2019-06-11

2123 Kinetic mechanism of human mitochondrial RNase P

Liu, X.; Wu, N.; Shanmuganathan, A.; Klemm, B. P.; Howard, M. J.; Lim, W. H.; Koutmos, M.; Fierke, C. A.

10.1101/666792 — biochemistry — Posted on 2019-06-11

2124 Antibiotic uptake across gram-negative outer membranes: better predictions towards better antibiotics

Ferreira, R. J.; Kasson, P.

10.1101/667006 — biochemistry — Posted on 2019-06-11

2125 ETHYLENE RESPONSE FACTOR (ERF) genes modulate plant root exudate composition and the attraction of plant parasitic nematodes

Dyer, S.; Weir, R. T.; Cox, D.; Cheseto, X.; Torto, B.; Dalzell, J. J.

10.1101/652321 — plant biology — Posted on 2019-06-11

2126 miR-467 Prevents Inflammation And Insulin Resistance In Response To Hyperglycemia

Gajeton, J.; Krukovets, I.; Yendamuri, R.; Verbovetskiy, D.; Vasanji, A.; Sul, L.; Stenina-Adognravi, O.

10.1101/666545 — physiology — Posted on 2019-06-11

2127 Eating junk-food has opposite effects on intrinsic excitability of nucleus accumbens core neurons in obesity-susceptible vs. -resistant rats.

Oginsky, M. F.; Ferrario, C. R.

10.1101/658971 — neuroscience — Posted on 2019-06-11

2128 Disrupting β-catenin dependent Wnt signaling activates an invasive gene program predictive of colon cancer progression

Chen, G. T.; Tifrea, D. F.; Murad, R.; Lyou, Y.; Mortazavi, A.; Edwards, R. A.; Waterman, M. L.

10.1101/667030 — cancer biology — Posted on 2019-06-11

2129 Fraction and Spatial Organization of Tumor-Infiltrating Lymphocytes Correlating with Bladder Cancer Patient Survival

Xu, H.; Park, S.; Hwang, T. H.

10.1101/666503 — bioinformatics — Posted on 2019-06-11

2130 An analysis of avian vocal performance at the note and song levels

Logue, D. M.; Sheppard, J. A.; Walton, B.; Brinkman, B. E.; Medina, O. J.

10.1101/664896 — animal behavior and cognition — Posted on 2019-06-11

2131 Next generation taxonomy: integrating traditional species description with the holobiont concept and genomic approaches - The in-depth characterization of a novel Euplotes species as a case study

Serra, V.; Gammuto, L.; Nitla, V.; Castelli, M.; Lanzoni, O.; Sassera, D.; Bandi, C.; Sandeep, B. V.; Verni, F.; Modeo, L.; Petroni, G.

10.1101/666461 — zoology — Posted on 2019-06-11

2132 Hemisphere-Specific Properties of the Ventriloquism Aftereffect in Humans and Monkeys

Kopco, N.; Loksa, P.; Lin, I.-f.; Groh, J.; Shinn-Cunningham, B.

10.1101/564682 — neuroscience — Posted on 2019-06-11

2133 The effects of a 10-day partial sleep deprivation and the following recovery on cognitive functioning - a behavioural and EEG study.

Beres, A. M.; Domagalik, A.; Ochab, J. K.; Oles, K.; Oginska, H.; Fafrowicz, M.; Marek, T.; Gudowska-Nowak, E.; Nowak, M. M.; Chialvo, D.; Szwed, J.

10.1101/666396 — neuroscience — Posted on 2019-06-11

2134 Visual dynamics cues in learning complex physical interactions

Hasson, C. J.; Jalili, P. F.

10.1101/662353 — neuroscience — Posted on 2019-06-11

2135 The genomic basis of evolved virus resistance is dependent on environmental resources

Roberts, K.; Meaden, S.; Sharpe, S.; Kay, S.; Doyle, T.; Wilson, D.; Bartlett, L. J.; Paterson, S.; Boots, M.

10.1101/666404 — evolutionary biology — Posted on 2019-06-11

2136 LSF small molecule inhibitors phenocopy LSF-targeted siRNAs causing mitotic defects and senescence in cancer cells

Willoughby, J. L. S.; George, K.; Roberto, M. P.; Chin, H. G.; Stoiber, P.; Shin, H.; Pedamallu, C. S.; Schaus, S. E.; Fitzgerald, K.; Shah, J.; Hansen, U.

10.1101/665570 — cancer biology — Posted on 2019-06-11

2137 Predicting the prognosis of non-small cell lung cancer by integrating microarray and clinical data with deep learning

Lai, Y.-H.; Chen, W.-N.; Hsu, T.-C.; Lin, C.; Tsao, Y.; Wu, S.

10.1101/656140 — bioinformatics — Posted on 2019-06-11

2138 Biased Signaling: Distinct Ligand-directed Plasma Membrane Signalsomes Using a Common RGS/G Protein Core

Ross-Elliott, T.; Watkins, J.; Shan, X.; Lou, F.; Dreyer, B.; Tunc-Ozdemir, M.; Jia, H.; Yang, J.; Wu, L.; Trusov, Y.; Krysan, P.; Jones, A.

10.1101/666578 — plant biology — Posted on 2019-06-11

2139 Revisiting the Origin of the Octoploid Strawberry

Liston, A.; Wei, N.; Tennessen, J. A.; Li, J.; Dong, M.; Ashman, T.-L.

10.1101/665216 — plant biology — Posted on 2019-06-11

2140 Investigating Affective and Motor Improvements with Dance in Parkinson’s Disease

Ciantar, S. R.; Bearss, K. A.; Levkov, G.; Bar, R. J.; DeSouza, J.

10.1101/665711 — physiology — Posted on 2019-06-11

2141 Benefits of higher resistance-training volume depends on ribosome biogenesis

Hammarström, D.; Ofsteng, S. J.; Koll, L.; Hanestadhaugen, M.; Hollan, I.; Apro, W.; Whist, J. E.; Blomstrand, E.; Ronnestad, B. R.; Ellefsen, S.

10.1101/666347 — physiology — Posted on 2019-06-11

2142 The P387 Thrombospondin-4 Variant Promotes Accumulation of Macrophages in Atherosclerotic Lesions

Muppala, S.; Rahman, M. T.; Krukovets, I.; Verbovetskiy, D.; Pluskota, E.; Fleischman, A.; Vince, D. G.; Plow, E. F.; Stenina-Adognravi, O.

10.1101/666602 — pathology — Posted on 2019-06-11

2143 Learning to evoke complex motor outputs with spatiotemporal neurostimulation using a hierarchical and adaptive optimization algorithm.

Lajoie, G.; Laferriere, S.; Dancause, N.; Bonizzato, M.

10.1101/662072 — neuroscience — Posted on 2019-06-11

2144 Levodopa Responsiveness Subtypes of Freezing of Gait: Results Using a Levodopa Challenge

McKay, J. L.; Goldstein, F. C.; Sommerfeld, B.; Bernhard, D.; Perez Parra, S.; Factor, S. A.

10.1101/667071 — neuroscience — Posted on 2019-06-11

2145 Sex-specific prefrontal cortex dysfunction underlying opioid-induced cognitive impairment

Anderson, E.; Engelhardt, A.; Porath, E.; Hearing, M.

10.1101/666099 — neuroscience — Posted on 2019-06-11

2146 Cas3 Mediated Target DNA Recognition and Cleavage is Independent of the Composition and Architecture of Cascade Surveillance Complex

Nimkar, S.; Anand, B.

10.1101/666776 — molecular biology — Posted on 2019-06-11

2147 Distinct gut metagenomics and metaproteomics signatures in prediabetics and treatment-naïve type 2 diabetics

Zhong, H.; Ren, H.; Lu, Y.; Fang, C.; Hou, G.; Yang, Z.; Chen, B.; Yang, F.; Zhao, Y.; Shi, Z.; Zhao, B.; Wu, J.; Zou, H.; Zi, J.; Chen, J.; Bao, X.; Hu, Y.; Gao, Y.; Zhang, J.; Hou, Y.; Xu, X.; Yang, H.; Wang, J.; Liu, S.; Jia, H.; Madsen, L.; Brix, S.; Liu, F.; Kristiansen, K.; Li, J.

10.1101/666263 — microbiology — Posted on 2019-06-11

2148 De Novo Growth Of Methanogenic Granules Indicates A Biofilm Life-Cycle With Complex Ecology

Trego, A.; Galvin, E.; Sweeney, C.; Dunning, S.; Murphy, C.; Mills, S.; Nzeteu, C.; Quince, C.; Connelly, S.; Ijaz, U. Z.; Collins, G.

10.1101/667386 — microbiology — Posted on 2019-06-11

2149 Fc receptor-like 6 (FCRL6) defines pre-BCR dependent and independent pathways of natural antibody selection

Davis, R. S.; Honjo, K.; Won, W.-J.; King, R. G.; Ianov, L.; Crossman, D. K.; Easlick, J. L.; Shakhmatov, M. A.; Khass, M.; Vale, A. M.; Stephan, R. P.; Li, R.

10.1101/667345 — immunology — Posted on 2019-06-11

2150 Genomic Environments and Their Influence on Transposable Element Communities

Saylor, B.; Kremer, S. C.; Gregory, T. R.; Cottenie, K.

10.1101/667121 — genomics — Posted on 2019-06-11

2151 Dissecting the binding mechanisms of transcription factors to DNA using a statistical thermodynamics framework.

Martin, P. C. N.; Zabet, N. R.

10.1101/666446 — genomics — Posted on 2019-06-11

2152 Robust Cancer Mutation Detection with Deep Learning Models Derived from Tumor-Normal Sequencing Data

Sahraeian, S. M. E.; Fang, L. T.; Mohiyuddin, M.; Hong, H.; Xiao, W.

10.1101/667261 — genomics — Posted on 2019-06-11

2153 Placental DNA methylation signatures of maternal smoking during pregnancy and potential impacts on fetal growth

Everson, T. M.; Vives-Usano, M.; Seyve, E.; Cardenas, A.; Lacasana, M.; Craig, J. M.; Lesseur, C.; Baker, E. R.; Fernandez-Jimenez, N.; Heude, B.; Perron, P.; Gonzalez-Alzaga, B.; Halliday, J.; Deyssenroth, M. A.; Karagas, M. R.; Iniguez, C.; Bouchard, L.; Carmona-Saez, P.; Loke, Y. J.; Hao, K.; Belmonte, T.; Charles, M. A.; Martorell-Marugan, J.; Muggli, E.; Chen, J.; Fernandez, M. F.; Tost, J.; Gomez-Martin, A.; London, S. J.; Sunyer, J.; Marsit, C. J.; Lepeule, J.; Hivert, M.-F.; Bustamante, M.

10.1101/663567 — genomics — Posted on 2019-06-11

2154 Rhizosphere metagenomics of mine tailings colonizing plants: assembling and selecting synthetic bacterial communities to enhance in situ bioremediation

Romero, M.; Gallego, D.; Blaz, J.; Lechuga, A.; Martinez, J. F.; Barajas, H. R.; Hayano-Kanashiro, C.; Peimbert, M.; Cruz-Ortega, R.; Molina-Freaner, F. E.; Alcaraz, L. D.

10.1101/664805 — genomics — Posted on 2019-06-11

2155 Hyperacetylated Chromatin Domains Mark Cell Type-Specific Genes and Suggest Distinct Modes of Enhancer Function

Fox, S.; Lillis, J. A.; Davidson, C.; Getman, M.; Kingsley, P. D.; Bulger, M.

10.1101/666784 — genetics — Posted on 2019-06-11

2156 Sperm quality parameters are increased and asymmetric in house mouse hybrids

Martincova, I.; Dureje, L.; Baird, S. J. E.; Pialek, J.

10.1101/666511 — evolutionary biology — Posted on 2019-06-11

2157 Differentiation of Urine-Derived Induced Pluripotent Stem Cells to Neuron, Astrocyte and Microvascular Endothelial Cells from a Diabetic Patient

Lin, Y.; Liu, W.; Zhang, P.; Tan, J.

10.1101/667485 — cell biology — Posted on 2019-06-11

2158 Pseudogene associated recurrent gene fusion in prostate cancer

Chakravarthi, B. V.; Arachchige, P. D.; Carskadon, S.; Kalyana-Sundaram, S.; Li, J.; Wu, K.-H. H.; Chandrashekar, D. S.; Peabody, J. O.; Stricker, H.; Hwang, C.; Chitale, D. A.; Williamson, S. R.; Gupta, N. S.; Navone, N. M.; Rogers, C.; Menon, M. M.; Varambally, S.; Palanisamy, N.

10.1101/666933 — cancer biology — Posted on 2019-06-11

2159 A Web Service for Assessing Insect Abundances for Meadow Birds by Image Analysis

Michels, R.; Vos, R. A.

10.1101/660027 — bioinformatics — Posted on 2019-06-11

2160 Children with Cerebral Palsy Return to Baseline Community Arm Movement after Constraint Induced Movement Therapy

Goodwin, B. M.; Sabelhaus, E. K.; Pan, Y.-C.; Bjornson, K. F.; Pham, K. L. D.; Walker, W. O.; Steele, K. M.

10.1101/667246 — bioengineering — Posted on 2019-06-11

2161 Biological identification and localization of uncyclized xanthommatin, a key intermediate in ommochrome biosynthesis: an in vitro-in vivo study

Figon, F.; Munsch, T.; Croix, C.; Viaud-Massuard, M.-C.; Lanoue, A.; Casas, J.

10.1101/666529 — biochemistry — Posted on 2019-06-11

2162 Characterizing the temporal dynamics of gene expression in single cells with sci-fate

Cao, J.; Zhou, W.; Steemers, F.; Trapnell, C.; Shendure, J.

10.1101/666081 — genomics — Posted on 2019-06-11

2163 Inferring disease-associated microRNAs using semi-supervised multi-label graph convolutional networks

Pan, X.; Shen, H.-B.

10.1101/666719 — bioinformatics — Posted on 2019-06-11

2164 Identification of positive chemotaxis in the protozoan pathogen Trypanosoma brucei

DeMarco, S. F.; Saada, E. A.; Lopez, M. A.; Hill, K. L.

10.1101/667378 — microbiology — Posted on 2019-06-11

2165 MetaPhat: Detecting and decomposing multivariate associations from univariate genome-wide association statistics

Lin, J.; Tabassum, R.; Ripatti, S.; Pirinen, M.

10.1101/661421 — bioinformatics — Posted on 2019-06-10

2166 Dysmorphic neuron density underlies intrinsic epileptogenicity of the centre of cortical tubers

Stephenson, S. E. M.; Owens, H. G.; Richards, K. L.; Lee, W. S.; DArcy, C.; Barton, S.; Mandelstam, S. A.; Maixner, W. J.; MacGregor, D.; Petrou, S.; Lockhart, P. J.; Harvey, A. S.; Leventer, R. J.

10.1101/621607 — neuroscience — Posted on 2019-06-10

2167 Inspiratory rhythmogenic activity is burst-independent and opioid-sensitive

Sun, X.; Thörn Perez, C.; Halemani D, N.; Shao, X. M.; Greenwood, M.; Heath, S. L.; Feldman, J. L.; Kam, K.

10.1101/665034 — neuroscience — Posted on 2019-06-10

2168 A novel inhibitor of complement C5 provides structural insights into activation

Reichhardt, M.; Johnson, S.; Tang, T.; Morgan, T.; Tebeka, N.; Popitsch, N.; Deme, J.; jore, M.; Lea, S. M.

10.1101/647354 — immunology — Posted on 2019-06-10

2169 Classification models for Invasive Ductal Carcinoma Progression, based on gene expression data-trained supervised machine learning

Roy, S.; Kumar, R.; Mittal, V.; Gupta, D.

10.1101/666222 — bioinformatics — Posted on 2019-06-10

2170 Machine learning reveals bilateral distribution of somatic L1 insertions in human neurons and glia

Zhu, X.; Zhou, B.; Pattni, R.; Gleason, K.; Tan, C.; Kalinowski, A.; Sloan, S.; Fiston-Lavier, A.-S.; Mariani, J.; Abyzov, A.; Petrov, D.; Vogel, H.; Moran, J. V.; Vaccarino, F. M.; Tamminga, C.; Levinson, D.; Urban, A. E.

10.1101/660779 — genomics — Posted on 2019-06-10

2171 An ultra high-density Arabidopsis thaliana crossover map that refines the influences of structural variation and epigenetic features

Rowan, B.; Heavens, D.; Feuerborn, T.; Tock, A. J.; Henderson, I. R.; Weigel, D.

10.1101/665083 — genetics — Posted on 2019-06-10

2172 High-throughput genotyping of a full voltage-gated sodium channel gene via genomic DNA using target capture sequencing and analytical pipeline MoNaS to discover novel insecticide resistance mutations

Itokawa, K.; Yatsu, K.; Sekizuka, T.; Maekawa, Y.; Komagata, O.; Sugiura, M.; Sasaki, T.; Tomita, T.; Kuroda, M.; Sawabe, K.; Kasai, S.

10.1101/564609 — genetics — Posted on 2019-06-10

2173 A chronology of multicellularity evolution in cyanobacteria

Hammerschmidt, K.; Landan, G.; Tria, F. D.; Dagan, T.

10.1101/570788 — evolutionary biology — Posted on 2019-06-10

2174 Manatee: detection and quantification of small ncRNAs from next-generation sequencing data

Handzlik, J. E.; Tastsoglou, S.; Vlachos, I. S.; Hatzigeorgiou, A. G.

10.1101/662007 — bioinformatics — Posted on 2019-06-10

2175 Stimulation-artifact-free, high-spatiotemporal-resolution in vivo opto-electrophysiology with μLED optoelectrodes

Kim, K.; Vöröslakos, M.; Seymour, J. P.; Wise, K. D.; Buzsaki, G.; Yoon, E.

10.1101/622670 — bioengineering — Posted on 2019-06-10

2176 G-quadruplexes sequester free heme in living cells

Graybuck, L. T.; Puig Lombardi, E.; Verga, D.; Guetta, C.; Nicolas, A.; Teulade-Fichou, M.-P.; Londono-Vallejo, A.; Maizels, N.

10.1101/652297 — genomics — Posted on 2019-06-10

2177 DOT: Gene-set analysis by combining decorrelated association statistics

Vsevolozhskaya, O.; Shi, M.; Hu, F.; Zaykin, D.

10.1101/665133 — genetics — Posted on 2019-06-10

2178 Clustering co-abundant genes identifies components of the gut microbiome that are reproducibly associated with colorectal cancer and inflammatory bowel disease

Minot, S. S.; Willis, A. D.

10.1101/567818 — bioinformatics — Posted on 2019-06-10

2179 SEQdata-BEACON: a comprehensive database of sequencing performance and statistical tools for performance evaluation and yield simulation in BGISEQ-500

Zhou, Y.; Liu, C.; Zhou, R.; Lu, A.; Huang, B.; Liu, L.; Chen, L.; Luo, B.; Huang, J.; Tian, Z.

10.1101/652347 — bioinformatics — Posted on 2019-06-10

2180 The shift from life in water to life on land advantaged planning in visually-guided behavior

Mugan, U.; MacIver, M. A.

10.1101/585760 — neuroscience — Posted on 2019-06-10

2181 Differential Expression Gene Explorer (DrEdGE): A tool for generating interactive online data visualizations for exploration of quantitative transcript abundance datasets

Tintori, S. C.; Golden, P.; Goldstein, B.

10.1101/618439 — genomics — Posted on 2019-06-10

2182 Guiding the Refinement of Biochemical Knowledgebases with Ensembles of Metabolic Networks and Machine Learning

Medlock, G. L.; Papin, J. A.

10.1101/460071 — systems biology — Posted on 2019-06-10

2183 A synthetic system for asymmetric cell division in Escherichia coli

Molinari, S.; Shis, D. L.; Chappell, J.; Igoshin, O. A.; Bennett, M. R.

10.1101/436535 — synthetic biology — Posted on 2019-06-10

2184 Rethinking pain threshold as a zone of uncertainty

Madden, V. J.; Kamerman, P. R.; Catley, M. J.; Bellan, V.; Russek, L. N.; Camfferman, D.; Moseley, L.

10.1101/521302 — neuroscience — Posted on 2019-06-10

2185 National HIV testing and diagnosis coverage in sub-Saharan Africa: a new modeling tool for estimating the \"first 90\" from program and survey data

Maheu-Giroux, M.; Marsh, K.; Doyle, C.; Godin, A.; Laniece Delaunay, C.; Johnson, L. F.; Jahn, A.; Abo, K.; Mbofana, F.; Boily, M.-C.; Buckeridge, D. L.; Hankins, C.; Eaton, J. W.

10.1101/532010 — epidemiology — Posted on 2019-06-10

2186 Mitf links neuronal activity and long-term homeostatic intrinsic plasticity

Atacho, D.; Reynisson, H.; Peturdottir, A. T.; Eysteinsson, T.; Steingrimsson, E.; Petersen, P.

10.1101/507640 — neuroscience — Posted on 2019-06-10

2187 Oxytocin amplifies sex differences in human mate choice

Xu, L.; Becker, B.; Luo, R.; Zheng, X.; Zhao, W.; Zhang, Q.; Kendrick, K.

10.1101/416198 — neuroscience — Posted on 2019-06-10

2188 Minimization of cross-talk between mitotic Checkpoint silencing and error correction

Roy, B.; Verma, V.; Sim, J.; Fontan, A.; Joglekar, A. P.

10.1101/459594 — cell biology — Posted on 2019-06-10

2189 GenVectors: an integrative analytical tool for spatial genetics

Duarte, L.; Lima, J.; Maestri, R.; Debastiani, V.; Collevatti, R.

10.1101/330761 — ecology — Posted on 2019-06-10

2190 Defining the Energetic Costs of Cellular Structures

Mahmoudabadi, G.; Phillips, R.; Lynch, M.; Milo, R.

10.1101/666040 — biophysics — Posted on 2019-06-10

2191 Spatiotemporal analysis reveals significant overlap of key proepicardial markers in the developing murine heart

Lupu, I.-E.; Redpath, A.; Smart, N.

10.1101/666610 — developmental biology — Posted on 2019-06-10

2192 Control iPSC lines with clinically annotated genetic variants for versatile multi-lineage differentiation

Hildebrandt, M. R.; Reuter, M. S.; Wei, W.; Tayebi, N.; Liu, J.; Sharmin, S.; Mulder, J.; Lesperance, L. S.; Brauer, P. M.; Kinnear, C.; Piekna, A.; Romm, A.; Howe, J.; Pasceri, P.; Mok, R. S.; Meng, G.; Rozycki, M.; Rodrigues, D. C.; Martinez, E. C.; Szego, M. J.; Zuniga-Pflücker, J. C.; Anderson, M. K.; Prescott, S. A.; Rosenblum, N. D.; Kamath, B. M.; Mital, S.; Scherer, S. W.; Ellis, J.

10.1101/666560 — developmental biology — Posted on 2019-06-10

2193 Conformational flexibility of GRASP protein and its constituent PDZ subdomains reveals structural basis of its promiscuous interactome

Mendes, L. F. S.; Batista, M. R. B.; Judge, P. J.; Watts, A.; Redfield, C.; Costa-Filho, A. J.

10.1101/666495 — biophysics — Posted on 2019-06-10

2194 Transcription factor LSF facilitiates lysine methylation of α-tubulin by microtubule-associated SET8

Chin, H. G.; Esteve, P. O.; Ruse, C.; Lee, J.; Schaus, S. E.; Pradhan, S.; Hansen, U.

10.1101/665984 — biochemistry — Posted on 2019-06-10

2195 Differential turnover of Nup188 controls its levels at centrosomes and role in centriole duplication

Vishnoi, N.; Dhanasekaran, K.; Chalfant, M.; Surovtsev, I.; Khokha, M.; Lusk, C. P.

10.1101/664409 — cell biology — Posted on 2019-06-10

2196 RobustClone: A robust PCA method of tumor clone and evolution inference from single-cell sequencing data

Chen, Z.; Gong, F.; Ma, L.; Wan, L.

10.1101/666271 — bioinformatics — Posted on 2019-06-10

2197 The effects of model complexity and size on metabolic flux distribution and control. Case study in E. coli.

Hameri, T.; Fengos, G.; Hatzimanikatis, V.

10.1101/666859 — systems biology — Posted on 2019-06-10

2198 Transcranial Pulse Stimulation with Ultrasound in Alzheimer’s disease – A new navigated focal brain therapy

Beisteiner, R.; Matt, E.; Fan, C.; Baldysiak, H.; Schoenfeld, M.; Philippi Novak, T.; Amini, A.; Aslan, T.; Reinecke, R.; Lehrner, J.; Weber, A.; Reime, U.; Goldenstedt, C.; Marlinghaus, E.; Hallett, M.; Lohse-Busch, H.

10.1101/665471 — neuroscience — Posted on 2019-06-10

2199 Longitudinal, Multiparametric MRI Assessment of repetitive mild TBI in rats

Khan, A. R.; Hansen, B.; Iversen, N. K.; Olesen, J. L.; Angoa-Perez, M.; Kuhn, D. M.; Ostergaard, L.; Jespersen, S. N.

10.1101/666024 — neuroscience — Posted on 2019-06-10

2200 Serological and metagenomic interrogation of cerebrospinal fluid implicates enteroviruses in pediatric acute flaccid myelitis

10.1101/666230 — microbiology — Posted on 2019-06-10

2201 Discovering novel long non-coding RNA predictors of anticancer drug sensitivity beyond protein-coding genes

Nath, A.; Lau, E. Y. T.; Lee, A. M.; Geeleher, P.; Cho, W. C. S.; Huang, R. S.

10.1101/666156 — bioinformatics — Posted on 2019-06-10

2202 Nitrogen-fixing Klebsiella variicola in feces from herbivorous tortoises

Martinez-Romero, E.; Montes-Grajales, D.; Jimenez, B.; Rogel, M. A.; Alagon, A.; Esturau-Escofet, N.; Esquivel, B.; Martinez-Romero, J.

10.1101/666818 — microbiology — Posted on 2019-06-10

2203 The rapid divergence of the Antarctic crinoid species Promachocrinus kerguelensis

Ben Chehida, Y.; Eleaume, M.; Gallut, C.; Achaz, G.

10.1101/666248 — evolutionary biology — Posted on 2019-06-10

2204 CAT1/SLC7A1 acts as a cellular receptor for bovine leukemia virus infection

Bai, L.; Sato, H.; Kubo, Y.; Wada, S.; Aida, Y.

10.1101/666958 — microbiology — Posted on 2019-06-10

2205 ENVELOPED VIRUS-LIKE PARTICLES (eVLPs) EXPRESSING MODIFIED FORMS OF ZIKA VIRUS PROTEINS E AND NS1 PROTECT MICE FROM ZIKA VIRUS INFECTION

Fluckiger, A.-C.; Bozic, J.; Diress, A.; Ontsouka, B.; Ahmed, T.; Ponce, A.; Kirchmeier, M.; Diaz-Mitoma, F.; Conlan, W.; Anderson, D. E.; Soare, C.

10.1101/666966 — immunology — Posted on 2019-06-10

2206 PHISDetector: a web tool to detect diverse in silico phage-host interaction signals

Zhang, F.; Zhou, F.; Gan, R.; Ren, C.; Jia, Y.; Yu, L.; Huang, Z.

10.1101/661074 — bioinformatics — Posted on 2019-06-10

2207 Diving beetle offspring oviposited in amphibian spawn prey on the tadpoles upon hatching

Gould, J.; Valdez, J.; Clulow, S.; Clulow, J.

10.1101/666008 — zoology — Posted on 2019-06-10

2208 The vasodilatory mechanism of nitric oxide and hydrogen sulfide in human mesenteric artery of colorectal cancer patients: role of potassium channels

Hassan, A. Y.; Maulood, I. M.; Salihi, A. B. Q.

10.1101/666834 — physiology — Posted on 2019-06-10

2209 Severe anaemia complicating HIV in Malawi; multiple co-existing aetiologies are associated with high mortality.

Huibers, M. N. H. W.; Bates, I.; Mckew, S.; Allain, T. J.; Coupland, S. E.; Phiri, C.; Phiri, K. S.; Boele van Hensbroek, M.; Calis, J. C.

10.1101/666743 — immunology — Posted on 2019-06-10

2210 Dogs defy the domestication syndrome: morphology does not covary with predicted behavioural correlations within dog breeds

Hansen Wheat, C.; van der Bijl, W.; Wheat, C. W.

10.1101/660829 — evolutionary biology — Posted on 2019-06-10

2211 An assessment of land use land cover change in Central Highland of Deccan Peninsula and Semi-Arid tracts of India

Mondal, T.; Qureshi, S. Q.; Jhala, Y. V.; Basu, P.

10.1101/665794 — ecology — Posted on 2019-06-10

2212 NAD+-dependent deacetylase SIRT1 is essential for meiotic progression and controls repair-recombination efficiency

Kaul, H.; Deota, S.; Fulzele, A.; Gonzalez-de-Peredo, A.; Kolthur-Seetharam, U.

10.1101/666891 — developmental biology — Posted on 2019-06-10

2213 Classification models for Invasive Ductal Carcinoma Progression, based on gene expression data-trained supervised machine learning

Gupta, D.; Roy, S.; Kumar, R.; Mittal, V.

10.1101/666222 — bioinformatics — Posted on 2019-06-10

2214 Phylogeographic reconstruction using air transportation data and its application to the 2009 H1N1 influenza A pandemic

Reimering, S.; Munoz, S.; McHardy, A. C.

10.1101/666982 — bioinformatics — Posted on 2019-06-10

2215 A cross-sectional survey of Social Media Anxiety among students of University of Nigeria

ALUH, D. O.; Chukwuobasi, T.; Mosanya, A.

10.1101/666701 — animal behavior and cognition — Posted on 2019-06-10

2216 First report on the effective intraperitoneal therapy of insulin-dependent diabetes mellitus in pet dogs using \"Neo-Islets\", aggregates of adipose stem and pancreatic islet cells

Gooch, A. M.; Zhang, P.; Hu, Z.; Loy Son, N.; Avila, N.; Fischer, J.; Roberts, G.; Sellon, R.; Westenfelder, C.

10.1101/666644 — cell biology — Posted on 2019-06-10

2217 Screening and functional analysis of differentially expressed genes in an animal model of EBV-associated lymphomas

Zhang, Y.; Wang, C.; Liu, L.; Peng, Q.; Gan, X.; Xie, L.; Tan, M.; He, R.; Tang, Y.; Wu, Y.; Gan, R.

10.1101/666917 — cancer biology — Posted on 2019-06-10

2218 Association Tests Using Copy Number Profile Curves (CONCUR) Enhances Power in Rare Copy Number Variant Analysis

Brucker, A. R.; Lu, W.; Marceau West, R.; Yu, Q.-Y.; Hsiao, C. K.; Hsiao, T.-H.; Lin, C.-H.; Magnusson, P. K. E.; Sullivan, P. F.; Szatkiewicz, J.; Lu, T.-P.; Tzeng, J.-Y.

10.1101/666875 — bioinformatics — Posted on 2019-06-10

2219 Preserved global cerebral blood flow accounts for youthful processing speed in older adults

Yang, F. N.; Xie, L.; Galli, O.; Detre, J. A.; Wolk, D. A.; Rao, H.

10.1101/665935 — neuroscience — Posted on 2019-06-10

2220 Beyond redistribution: In-stream habitat restoration increases capacity for young-of-the-year salmon and trout in the Entiat River, WA

Polivka, C.; Claeson, S. M.

10.1101/665604 — ecology — Posted on 2019-06-10

2221 Manatee: detection and quantification of small ncRNAs from next-generation sequencing data

Handzlik, J. E.; Tastsoglou, S.; Vlachos, I. S.; Hatzigeorgiou, A. G.

10.1101/662007 — bioinformatics — Posted on 2019-06-10

2222 An integrated landscape of protein expression in human cancer

Jarnuczak, A. F.; Najgebauer, H.; Barzine, M.; Kundu, D.; Ghavidel, F.; Perez-Riverol, Y.; Papatheodorou, I.; Brazma, A.; Vizcaino, J. A.

10.1101/665968 — bioinformatics — Posted on 2019-06-10

2223 EVALUATION OF OSTEOINDUCTIVITY OF DIFFERENT CALCIUM PHOSPHATE AND PTMC-CALCIUM PHOSPHATE COMPOSITE BIOMATERIALS IN A SHEEP MODEL

van Arnhem, A.; Zeng, N.; van Leeuwen, A.; Kuijer, R.; Bos, R.; Grijpma, D.

10.1101/666800 — bioengineering — Posted on 2019-06-10

2224 Optimization Assisted Discovery of a Conductance Based Neuronal Network Model for the Elementary Motion Detector

Banerjee, A.

10.1101/666149 — neuroscience — Posted on 2019-06-10

2225 The impact of rainfall on drinking water quality in Antananarivo, Madagascar

Bastaraud, A.; Perthame, E.; RAKOTONDRAMANGA, J.-M.; MAHAZOSAOTRA, J.; RAVAONINDRINA, N.; Jambou, R.

10.1101/666826 — microbiology — Posted on 2019-06-10

2226 Respiratory viral infection alters the gut microbiota by inducing inappetence

Groves, H.; Higham, S.; Moffatt, M.; Cox, M.; Tregoning, J.

10.1101/666354 — immunology — Posted on 2019-06-10

2227 Genome analysis and Hi-C assisted assembly of Elaeagnus angustifolia L., a deciduous tree belonging to Elaeagnaceae

Mao, Y.; Hu, Q.; Zhang, M.; Yang, L.; Zhang, L.; Wang, Y.; Yin, Y.; Pang, H.; Liu, Y.; Su, X.; Li, S.; Cui, X.; Ma, F.; Duan, N.; Zhang, D.; Hu, Y.; Mao, Z.; Chen, X.; Shen, X.

10.1101/665927 — genetics — Posted on 2019-06-10

2228 Differential effects of variations in human P450 oxidoreductase on the aromatase activity of CYP19A1 polymorphisms R264C and R264H

Parween, S.; Di Nardo, G.; Baj, F.; Zhang, C.; Gilardi, G.; Pandey, A. V.

10.1101/664839 — biochemistry — Posted on 2019-06-10

2229 Laboratory evolution of Escherichia coli enables life based on fluorinated amino acids

Agostini, F.; Sinn, L.; Petras, D.; Schipp, C. J.; Kubyshkin, V.; Berger, A. A.; Rappsilber, J.; Dorrestein, P. C.; Budisa, N.; Koksch, B.

10.1101/665950 — synthetic biology — Posted on 2019-06-10

2230 Exome sequencing of ion-beam-induced mutants facilitates the detection of candidate genes responsible for phenotypes of mutants in rice

Oono, Y.; Ichida, H.; Morita, R.; Nozawa, S.; Satoh, K.; Shimizu, A.; Abe, T.; Kato, H.; Hase, Y.

10.1101/666677 — plant biology — Posted on 2019-06-10

2231 Circadian diversity in Swedish Arabidopsis accessions is associated with naturally occurring genetic variation in COR28

Rees, H.; Joynson, R.; Brown, J. K. M.; Hall, A.

10.1101/665455 — plant biology — Posted on 2019-06-10

2232 A simple pressure-assisted method for cryo-EM specimen preparation

Zhao, J.; Xu, H.; Carroni, M.; Lebrette, H.; Wallden, K.; Moe, A.; Matsuoka, R.; Hogbom, M.; Zou, X.

10.1101/665448 — molecular biology — Posted on 2019-06-10

2233 Rapid response to the Alpha-1 Adrenergic Agent Phenylephrine in the Perioperative Period is Impacted by Genomics and Ancestry

Wenric, S.; Jeff, J. M.; Joseph, T.; Yee, M.-C.; Belbin, G. M.; Regeneron Genetics Center, ; CBIPM Genomics Group, ; Owusu Obeng, A.; Ellis, S. B.; Bottinger, E. P.; Gottesman, O.; Levin, M. A.; Kenny, E. E.

10.1101/664961 — genomics — Posted on 2019-06-10

2234 Caveolae coupling of melanocytes signaling and mechanics is required for human skin pigmentation

Domingues, L.; Hurbain, I.; Gilles-Marsens, F.; Andre, N.; Dewulf, M.; Romao, M.; Viaris de Lesegno, C.; Blouin, C.; Guere, C.; Vie, K.; Raposo, G.; Lamaze, C.; Delevoye, C.

10.1101/666388 — cell biology — Posted on 2019-06-10

2235 MetaPrism: A Toolkit for Joint Taxa/Gene Analysis of Metagenomic Sequencing Data

Kim, J.; Jiang, S.; Xiao, G.; Xie, Y.; Koh, A. Y.; Zhan, X.

10.1101/664748 — bioinformatics — Posted on 2019-06-10

2236 Transcriptomic signatures of brain regional vulnerability to Parkinson’s disease

10.1101/664771 — neuroscience — Posted on 2019-06-10

2237 Population structure and antimicrobial resistance patterns of Salmonella Typhi isolates in Bangladesh from 2004 to 2016

Rahman, S. I. A.; Dyson, Z. A.; Klemm, E. J.; Khanam, F.; Holt, K. E.; Chowdhury, E. K.; Dougan, G.; Qadri, F.

10.1101/664136 — genomics — Posted on 2019-06-10

2238 The dynamic chromatin architecture of the regenerating liver

Wang, A. W.; Wang, Y. J.; Zahm, A. M.; Morgan, A. R.; Wangensteen, K. J.; Kaestner, K.

10.1101/664862 — genomics — Posted on 2019-06-10

2239 Species matter for predicting the functioning of evolving microbial communities

Barraclough, T.

10.1101/666685 — evolutionary biology — Posted on 2019-06-10

2240 Adaptive meiotic drive in selfing populations with heterozygote advantage

Brud, E.

10.1101/666180 — evolutionary biology — Posted on 2019-06-10

2241 Re-modeling of foliar membrane lipids in a seagrass allows for growth in phosphorus deplete conditions

Koelmel, J.; Campbell, J.; Meke, L. E.; Guingab-Cagmat, J.; Garrett, T.; Stingl, U.

10.1101/666651 — ecology — Posted on 2019-06-10

2242 Time machine: Can a dye from 1928 be re-purposed for modern, fluorescence-based detection of amyloid-like fibrils?

Antimonova, O. I.; Grudinina, N. A.; Egorov, V. V.; Ilyin, V. V.; Zabrodskaya, Y. A.; Ramsay, E. S.; Polukeev, V. A.; Shavlovsky, M. M.

10.1101/665364 — biochemistry — Posted on 2019-06-10

2243 Hepcidin and conventional markers to detect iron deficiency in severely anaemic HIV-infected patients in Malawi.

Huibers, M. N.; Calis, J.; Allain, T. J.; Coupland, S. E.; Phiri, C.; Phiri, K.; Swinkels, D. W.; Boele van Hensbroek, M.; Bates, I.

10.1101/666727 — biochemistry — Posted on 2019-06-10

2244 Quickly fading afterimages: hierarchical adaptations in human perception

Klinger, M. E.; Kell, C. A.; Nikolic, D.

10.1101/666198 — neuroscience — Posted on 2019-06-10

2245 Endothelial CXCL5 negatively regulates myelination and repair after white matter stroke

Xiao, G.; Kumar, R.; Burguet, J.; Komuro, Y.; Kakarla, V.; Williams, C. K.; Zhang, X. R.; Macknicki, M.; Brumm, A.; Kawaguchi, R.; Vinters, H. V.; Carmichael, S. T.; Havton, L. A.; DeCarli, C.; Hinman, J. D.

10.1101/664953 — neuroscience — Posted on 2019-06-10

2246 Largely distinct networks mediate perceptually-relevant auditory and visual speech representations

Keitel, A.; Gross, J.; Kayser, C.

10.1101/661405 — neuroscience — Posted on 2019-06-10

2247 Beyond the suprachiasmatic nucleus: circadian rhythmicity shapes astrocyte morphology and neuronal function in hippocampal area CA1

McCauley, J.; Petroccione, M.; D'Brant, L.; Todd, G.; Affinnih, N.; Wisnoski, J.; Zahid, S.; Shree, S.; Sousa, A.; Migliore, R.; Brazhe, A.; Leapman, R.; Khmaladze, A.; Semyanov, A.; Migliore, M.; Scimemi, A.

10.1101/666073 — neuroscience — Posted on 2019-06-10

2248 Pervasive Translation in Mycobacterium tuberculosis

Smith, C.; Canestrari, J.; Wang, J.; Derbyshire, K.; Gray, T.; Wade, J.

10.1101/665208 — microbiology — Posted on 2019-06-10

2249 Heavy Chain CDR 3 and Junctional Length Biases in Human Antibody Repertoires Associated with Heavy and Light Chain Germline Utilization

Sankar, K.; Hoi, K. H.; Hotzel, I.

10.1101/664714 — immunology — Posted on 2019-06-10

2250 Multiplex chromatin interaction analysis by signal processing and statistical algorithms

Kim, M.; Zheng, M.; Tian, S. Z.; Capurso, D.; Lee, B.; Chuang, J. H.; Ruan, Y.

10.1101/665232 — genomics — Posted on 2019-06-10

2251 Neuronal TORC1 modulates longevity via AMPK and cell nonautonomous regulation of mitochondrial dynamics in C. elegans

Zhang, Y.; Lanjuin, A.; Chowdhury, S. R.; Mistry, M.; Silva Garcia, C. G.; Weir, H. J.; Lee, C.-L.; Escoubas, C. C.; Tabakovic, E.; Mair, W. B.

10.1101/665190 — genetics — Posted on 2019-06-10

2252 Constructing a high-density linkage map to infer the genomic landscape of recombination rate variation in European Aspen (Populus tremula)

Apuli, R.-P.; Bernhardsson, C.; Schiffthaler, B.; Robinson, K. M.; Jansson, S.; Street, N. R.; Ingvarsson, P. K.

10.1101/664037 — evolutionary biology — Posted on 2019-06-10

2253 The mechanical stability of the worlds tallest broadleaf trees

Jackson, T. D.; Shenkin, A. F.; Majalap, N.; bin Jami, J.; bin Sailim, A.; Reynolds, G.; Coomes, D.; Chandler, C.; Boyd, D.; Burt, A.; Wilkes, P.; Disney, M.

10.1101/664292 — ecology — Posted on 2019-06-10

2254 Anatomical meniscus construct with zone specific biochemical composition and structural organization

Bahcecioglu, G.; Bilgen, B.; HASIRCI, N.; Hasirci, V.

10.1101/665067 — bioengineering — Posted on 2019-06-10

2255 Multidimensional extracellular-matrix analysis reveals a silent pre-clinical signature in inflammatory disease

Shimshoni, E.; Afik, R.; Shenoy, A.; Adler, M.; Puricelli, L.; Ghini, V.; Mouhadeb, O.; Gluck, N.; Fishman, S.; Werner, L.; Shouval, D. S.; Varol, C.; Podesta, A.; Turano, P.; Geiger, T.; Milani, P.; Luchinat, C.; Alon, U.; Sagi, I.

10.1101/665653 — systems biology — Posted on 2019-06-10

2256 A blueprint of seed desiccation sensitivity in the genome of Castanospermum australe

Farrant, J. M.; Hilhorst, H.; Buitink, J.; Ligterink, W.; Leprince, O.; Pelletier, S.; Gabaldon, T.; Schranz, M. E.; Delahaie, J.; Julca, I.; Marcet-Houben, M.; Nijveen, H.; Derks, M.; Schijlen, E.; Zhao, T.; Jonkheer, E.; Chaturi, U.; Costa, M.-C. D.; Marques, A.

10.1101/665661 — plant biology — Posted on 2019-06-10

2257 Correction of β3 integrin haplo-insufficiency by CRISPRa normalizes cortical network activity

Jaudon, F.; Thalhammer, A.; Cingolani, L. A.

10.1101/664706 — neuroscience — Posted on 2019-06-10

2258 Left prefrontal connectivity links subthalamic stimulation with depressive symptoms in Parkinson’s disease

Irmen, F.; Horn, A.; Mosley, P.; Perry, A.; Petry-Schmelzer, J. N.; Dafsari, H.; Barbe, M.; Visser-Vandewalle, V.; Schneider, G.-H.; Li, N.; Kübler, D.; Wenzel, G.; Kühn, A. A.

10.1101/665976 — neuroscience — Posted on 2019-06-10

2259 Characterising group-level brain connectivity: a framework using Bayesian exponential random graph models

Lehmann, B. C.; Henson, R. N.; Geerligs, L.; Cam-CAN, ; White, S. R.

10.1101/665398 — neuroscience — Posted on 2019-06-10

2260 Circadian Oscillations Persist in Low Malignancy Breast Cancer Cells

Lellupitiyage Don, S. S.; Lin, H.-H.; Furtado, J. J.; Qraitem, M.; Taylor, S. R.; Farkas, M. E.

10.1101/664664 — molecular biology — Posted on 2019-06-10

2261 CYLD, a Mechanosensitive Deubiquitinase, Regulates TGFβ for Load-induced Bone Formation and Mediates PGE2-dependent Repression of TGFβ Signaling in Osteocytes

Nguyen, J.; Alliston, T.

10.1101/665802 — molecular biology — Posted on 2019-06-10

2262 Illuminating the functional rare biosphere of the Greenland Ice Sheet’s Dark Zone

Gokul, J. K.; Cameron, K. A.; Irvine-Fynn, T. D. L.; Cook, J. M.; Hubbard, A.; Stibal, M.; Hegarty, M.; Mur, L.; Edwards, A.

10.1101/664334 — microbiology — Posted on 2019-06-10

2263 The Typhoid Toxin Produced by the Nontyphoidal Salmonella Serovar Javiana Can Utilize Multiple Binding Subunits, which Compete for Inclusion in the Holotoxin

Gaballa, A.; Harrand, S.; Cohn, A.; Wiedmann, M.; Cheng, R.

10.1101/666016 — microbiology — Posted on 2019-06-10

2264 Metagenomic Next-generation Sequencing of Cerebrospinal Fluid for the Diagnosis of Central Nervous System Infections: A Multicentre Prospective Study

Fan, S.; Wang, X.; Hu, Y.; Shi, J.; Zou, Y.; Zhao, W.; Qiao, X.; Wang, C.; Chin, J. H.; Liu, L.; Qin, L.; Wang, S.; Li, H.; Yue, W.; Zhang, W.; Li, X.; Ge, Y.; Wu, H.; Chen, W.; Li, Y.; Guan, T.; Li, S.; Wu, Y.; Zhou, G.; Liu, Z.; Piao, Y.; Zhang, J.; Ren, C.; Cui, L.; Liu, C.; Ren, H.; Zhao, Y.; Feng, S.; Jiang, H.; Wang, J.; Bu, H.; Guo, S.; Peng, B.; Cui, L.; Li, W.; Guan, H.

10.1101/658047 — genomics — Posted on 2019-06-10

2265 Why evolve reliance on the microbiome for timing of ontogeny?

Metcalf, C. J. E.; Henry, L. P.; Rebolleda-Gomez, M.; Koskella, B.

10.1101/665182 — evolutionary biology — Posted on 2019-06-10

2266 A Generalized Similarity Metric for Peptide Binding Affinity Prediction

Rodriguez, J. L.; Rath, S. S.; Francis-Landau, J. S.; Demirci, Y.; Ustundag, B. B.; Sarikaya, M.

10.1101/654913 — bioinformatics — Posted on 2019-06-10

2267 A versatile microfluidic device for highly inclined thin illumination microscopy in the moss Physcomitrella patens

Kozgunova, E.; Goshima, G.

10.1101/660480 — plant biology — Posted on 2019-06-10

2268 Type-2-diabetes alters CSF but not plasma metabolomic and AD risk profiles in vervet monkeys

Kavanagh, K.; Day, S. M.; Pait, M. C.; Moritz, W. R.; Newgard, C. B.; Ilkayeva, O.; McClain, D. A.; Macauley, S. L.

10.1101/665117 — neuroscience — Posted on 2019-06-10

2269 Ventromedial prefrontal cortex compression during concept learning

Mack, M. L.; Preston, A. R.; Love, B. C.

10.1101/178145 — neuroscience — Posted on 2019-06-10

2270 Thalamic-medial temporal lobe connectivity underpins familiarity memory

Kafkas, A.; Mayes, A.; Montaldi, D.

10.1101/665687 — neuroscience — Posted on 2019-06-10

2271 Revealing the neural networks that extract conceptual gestalts from continuously evolving or changing semantic contexts

Branzi, F. M.; Humphreys, G.; Hoffman, P.; Lambon Ralph, M.

10.1101/666370 — neuroscience — Posted on 2019-06-10

2272 The observation of explicit and implicit visuomotor cues can drive predictive motor control

Rens, G.; Davare, M.

10.1101/664854 — neuroscience — Posted on 2019-06-10

2273 Reliability and Reproducibility of T1-weighted images: comparing MPRAGE and Prospective Motion Correction with Volumetric Navigators

Ai, L.; Craddock, R. C.; Tottenham, N.; Colcombe, S.; Milham, M.; Franco, A. R.

10.1101/666289 — neuroscience — Posted on 2019-06-10

2274 Class A PBPs have a distinct and unique role in the construction of the pneumococcal cell wall.

Straume, D.; Wiaroslawa Piechowiak, K.; Olsen, S.; Stamsas, G. A.; Berg, K. H.; Kjos, M.; Heggenhougen, M. V.; Alcorlo, M.; Hermoso, J. A.; Havarstein, L. S.

10.1101/665463 — microbiology — Posted on 2019-06-10

2275 Revealing microbial assemblage structure in the human gut microbiome using latent Dirichlet allocation

Hosoda, S.; Nishijima, S.; Fukunaga, T.; Hattori, M.; Hamada, M.

10.1101/664219 — microbiology — Posted on 2019-06-10

2276 A Novel Tmem119-tdTomato Reporter Mouse Model for Studying Microglia in the Central Nervous System

Ruan, C.; Sun, L.; Kroshilina, A.; Beckers, L.; De Jager, P. L.; Bradshaw, E. M.; Hasson, S.; Wang, G.; Elyaman, W.

10.1101/665893 — immunology — Posted on 2019-06-10

2277 Protective microbiomes can limit the evolution of host pathogen defense

Metcalf, C. J.; Koskella, B.

10.1101/665265 — evolutionary biology — Posted on 2019-06-10

2278 High-resolution mapping of forest vulnerability to wind for disturbance-aware forestry and climate change adaptation

Suvanto, S.; Peltoniemi, M.; Tuominen, S.; Strandström, M.; Lehtonen, A.

10.1101/666305 — ecology — Posted on 2019-06-10

2279 Plasmodium Kinesin-8X associates with mitotic spindles and is essential for oocyst development during parasite proliferation and transmission

Zeeshan, M.; Shilliday, F.; Liu, T.; Abel, S.; Mourier, T.; Ferguson, D. J. P.; Rea, E.; Stanway, R. R.; Roques, M.; Williams, D.; Daniel, E.; Brady, D.; Roberts, A. J.; Sinden, R. E.; Holder, A. A.; Pain, A.; Le Roch, K. G.; Moores, C. A.; Tewari, R.

10.1101/665836 — cell biology — Posted on 2019-06-10

2280 The unjamming transition is distinct from the epithelial-to-mesenchymal transition.

Mitchel, J. A.; Das, A.; O'Sullivan, M. J.; Stancil, I. T.; DeCamp, S. J.; Koehler, S.; Butler, J. P.; Fredberg, J. J.; Nieto, M. A.; Bi, D.; Park, J.-A.

10.1101/665018 — biophysics — Posted on 2019-06-10

2281 The landscape of chloroplast genome assembly tools

Freudenthal, J. A.; Pfaff, S.; Terhoeven, N.; Korte, A.; Ankenbrand, M. J.; Foerster, F.

10.1101/665869 — bioinformatics — Posted on 2019-06-10

2282 A computational model for learning from repeated trauma

Kaye, A. P.; Kwan, A. C.; Ressler, K. J.; Krystal, J. H.

10.1101/659425 — animal behavior and cognition — Posted on 2019-06-10

2283 Uncertainty quantification of parenchymal tracer distribution using random diffusion and convective velocity fields

Croci, M.; Vinje, V.; Rognes, M. E.

10.1101/665109 — neuroscience — Posted on 2019-06-10

2284 Hyperspectral environmental illumination maps: Characterizing directional spectral variation in natural environments

Morimoto, T.; Kishigami, S.; Linhares, J. M. M.; Nascimento, S. M. C.; Smithson, H. E.

10.1101/660290 — neuroscience — Posted on 2019-06-10

2285 High somato-dendritic coupling of V1 layer 5 neurons independent of behavioural state and visual stimulation

Francioni, V.; Rochefort, N.

10.1101/664177 — neuroscience — Posted on 2019-06-10

2286 Diversity of fall armyworm, Spodoptera fugiperda and their gut bacterial community in Kenya

Gichuhi, J.; Sevgan, S.; Khamis, F. M.; van den Berg, J.; du Plessis, H.; Ekesi, S.; Herren, J.

10.1101/664987 — molecular biology — Posted on 2019-06-10

2287 HAT1 drives a gene-metabolite circuit that links nutrient metabolism to histone production

Gruber, J. J.; Geller, B.; Lipchik, A. M.; Chen, J.; Salahudeen, A. A.; Ram, A. N.; Ford, J. M.; Kuo, C. J.; Snyder, M. P.

10.1101/664615 — molecular biology — Posted on 2019-06-10

2288 Alpha-Actinin-1 promotes activity of the L-type Ca2+ Channel CaV1.2

Turner, M.; Anderson, D.; Nieves-Cintron, M.; Bartels, P.; Coleman, A. M.; Henderson, P. B.; Man, K. N. M.; Yarov-Yarovoy, V.; Bers, D. M.; Navedo, M. F.; Horne, M. C.; Ames, J. B.; Hell, J. W.

10.1101/664102 — molecular biology — Posted on 2019-06-10

2289 Microtubule-dependent transport of arenavirus matrix protein demonstrated using live-cell imaging microscopy.

Takamatsu, Y.; Kajikawa, J.; Muramoto, Y.; Nakano, M.; Noda, T.

10.1101/665521 — microbiology — Posted on 2019-06-10

2290 A case for a reverse-frame coding sequence in a group of positive-sense RNA viruses

Dinan, A. M.; Lukhovitskaya, N. I.; Olendraite, I.; Firth, A. E.

10.1101/664342 — genomics — Posted on 2019-06-10

2291 Dynamics of Meiotic Sex Chromosome Inactivation and Pachytene Activation in Mice Spermatogenesis

Vertesy, A.; Frias-Aldeguer, J.; Sahin, Z.; Rivron, N.; van Oudenaarden, A.; Geijsen, N.

10.1101/665372 — genomics — Posted on 2019-06-10

2292 Artificial selection on male size depletes genetic variance but not covariance of life history traits in the yellow dung fly

Postma, E.; Teuschl, Y.; Llaurens, V.; Reim, C.; Blanckenhorn, W. U.

10.1101/664326 — evolutionary biology — Posted on 2019-06-10

Hodge, J. R.; Santini, F.; Wainwright, P. C.

10.1101/665638 — evolutionary biology — Posted on 2019-06-10

2294 A burst of genetic innovation in actin-related proteins (Arps) for testis-specific function in a Drosophila lineage

Schroeder, C. M.; Valenzuela, J.; Hocky, G. M.; Malik, H. S.

10.1101/665299 — evolutionary biology — Posted on 2019-06-10

2295 The thin edge of the wedge: extremely high extinction risk in wedgefishes and giant guitarfishes

Kyne, P. M.; Jabado, R. W.; Rigby, C. L.; Dharmadi, ; Gore, M. A.; Pollock, C. M.; Herman, K. B.; Cheok, J.; Ebert, D. A.; Simpfendorfer, C. A.; Dulvy, N. K.

10.1101/595462 — ecology — Posted on 2019-06-10

2296 Zebrafish spinal cord repair is accompanied by transient tissue stiffening

Möllmert, S.; Kharlamova, M.; Hoche, T.; Taubenberger, A. V.; Abuhattum, S.; Kuscha, V.; Kurth, T.; Brand, M.; Guck, J.

10.1101/666032 — biophysics — Posted on 2019-06-10

2297 Predicting Synthetic Lethal Interactions usingHeterogeneous Data Sources

Liany, H.; Jeyasekharan, A.; Rajan, V.

10.1101/660092 — bioinformatics — Posted on 2019-06-10

2298 Inspiratory rhythmogenic activity is burst-independent and opioid-sensitive

Sun, X.; Thörn Perez, C.; Halemani D, N.; Shao, X. M.; Greenwood, M.; Heath, S. L.; Feldman, J. L.; Kam, K.

10.1101/665034 — neuroscience — Posted on 2019-06-10

2299 The Dreem Headband as an Alternative to Polysomnography for EEG Signal Acquisition and Sleep Staging

Arnal, P. J.; Thorey, V.; Ballard, M. E.; Hernandez, A. B.; Guillot, A.; Jourde, H.; Harris, M.; Guillard, M.; Van Beers, P.; Chennaoui, M.; Sauvet, F.

10.1101/662734 — neuroscience — Posted on 2019-06-10

2300 Transcriptomic Analysis of the Neurogenesis Signature suggests Continued but Minimal Neurogenesis in the Adult Human Hippocampus

Kumar, A.; Pareek, V.; Faiq, M. A.; Kumar, P.; Kumari, C.; Singh, H. N.; Ghosh, S. K.

10.1101/664995 — neuroscience — Posted on 2019-06-10

2301 A Symmetric Prior for the Regularisation of Elastic Deformations: Improved Anatomical Plausibility in Nonlinear Image Registration

Lange, F. J.; Ashburner, J.; Smith, S. M.; Andersson, J. L.

10.1101/664227 — neuroscience — Posted on 2019-06-10

2302 Using low-cost alcohol sensors to monitor real-time olfactory information during odor-guided navigation

Tariq, M. F.; Lewis, S. M.; Lowell, A. E.; Perkel, D. J.; Gire, D. H.

10.1101/665703 — neuroscience — Posted on 2019-06-10

2303 Phosphatidylcholine biosynthesis in Mitis group streptococci via a host metabolite scavenging pathway

Joyce, L.; Guan, Z.; Palmer, K.

10.1101/664672 — microbiology — Posted on 2019-06-10

2304 Tracking somatic drift reveals small effective population size of stem cells and high somatic mutation rate in asexual planaria

Asgharian, H.; Dunham, J. P.; Marjoram, P.; Nuzhdin, S. V.

10.1101/665166 — genetics — Posted on 2019-06-10

2305 An ultra high-density Arabidopsis thaliana crossover map that refines the influences of structural variation and epigenetic features

Rowan, B.; Heavens, D.; Feuerborn, T. R.; Tock, A. J.; Henderson, I.; Weigel, D.

10.1101/665083 — genetics — Posted on 2019-06-10

2306 Auto-regressive modeling and diagnostics for qPCR amplification

Hsu, B.; Sherina, V.; McCall, M. N.

10.1101/665596 — bioinformatics — Posted on 2019-06-10

2307 Optogenetic control of Wnt signaling for modeling early embryogenic patterning with human pluripotent stem cells

Repina, N. A.; Bao, X.; Zimmermann, J. A.; Joy, D. A.; Kane, R. S.; Schaffer, D. V.

10.1101/665695 — bioengineering — Posted on 2019-06-10

2308 Role of enhanced glucocorticoid receptor sensitivity in inflammation in PTSD: Insights from a computational model for circadian-neuroendocrine-immune interactions

Somvanshi, P. R.; Mellon, S. H.; Yehuda, R.; Flory, J.; Bierer, L.; Makotkine, I.; Marmar, C.; Jett, M.; Doyle, F. J.

10.1101/664201 — systems biology — Posted on 2019-06-10

2309 In-field detection and quantification of Septoria tritici blotch in diverse wheat germplasm using spectral-temporal features

Anderegg, J.; Hund, A.; Karisto, P.; Mikaberidze, A.

10.1101/664011 — plant biology — Posted on 2019-06-10

2310 Improved control of Septoria tritici blotch in durum wheat using cultivar mixtures

Ben M'Barek, S.; Karisto, P.; Fakhfakh, M.; Kouki, H.; Mikaberidze, A.; Yahyaoui, A.

10.1101/664078 — plant biology — Posted on 2019-06-10

2311 Precise implantation of super-paramagnetic iron oxide (SPIO) nanoparticles in hippocampus with external rotating magnetic field (RMF) produces rapid antidepressent effects in mice

Chi, Y.; Wenwen, C.; Mengqin, X.; Jingyi, D.; JF, S.

10.1101/665315 — neuroscience — Posted on 2019-06-10

2312 Defining and predicting transdiagnostic categories of neurodegenerative disease

Cornblath, E. J.; Robinson, J. L.; Lee, V. M. Y.; Trojanowski, J. Q.; Bassett, D. S.

10.1101/664250 — neuroscience — Posted on 2019-06-10

2313 Network Synchronization and Synchrony Propagation:Emergent Elements of Inspiration

Ashhad, S.; Feldman, J. L.

10.1101/664946 — neuroscience — Posted on 2019-06-10

2314 Untapped microbial composition along a horizontal oxygen gradient in a Costa Rican volcanic influenced acid rock drainage system

Arce-Rodriguez, A.; Puente-Sanchez, F.; Avendano, R.; Libby, E.; Mora-Amador, R.; Rojas, K.; Pieper, D. H.; Chavarria, M.

10.1101/663633 — microbiology — Posted on 2019-06-10

2315 Decoding commensal-host communication through genetic engineering of Staphylococcus epidermidis

Chen, Y. E.; Bouladoux, N.; Hurabielle, C.; Mattke, A.; Belkaid, Y. A.; Fischbach, M. A.

10.1101/664656 — microbiology — Posted on 2019-06-10

2316 Immunoglobulin heavy chains are sufficient to determine most B cell clonal relationships

Zhou, J. Q.; Kleinstein, S. H.

10.1101/665760 — immunology — Posted on 2019-06-10

2317 Use of a mechanistic growth model in fish habitat restoration: juvenile Chinook salmon and steelhead as a test case

Polivka, C. M.; Mihaljevic, J. R.; Dwyer, G.

10.1101/665588 — ecology — Posted on 2019-06-10

2318 A Bacterial Surface Layer Protein Exploits Multi-step Crystallization for Rapid Self-assembly

Herrmann, J.; Li, P.-N.; Jabbarpour, F.; Chan, A. C. K.; Rajkovic, I.; Matsui, T.; Shapiro, L.; Smit, J.; Weiss, T.; Murphy, M. E. P.; Wakatsuki, S.

10.1101/665745 — biophysics — Posted on 2019-06-10

2319 Frataxin deficiency induces lipid accumulation and affects thermogenesis in brown adipose tissue

Turchi, R.; Tortolici, F.; Guidobaldi, G.; Iacovelli, F.; Falconi, M.; Rufini, S.; Faraonio, R.; Casagrande, V.; De Angelis, L.; Federici, M.; Carotti, S.; Francesconi, M.; Zingariello, M.; Morini, S.; Bernardini, R.; Mattei, M.; Lettieri-Barbato, D.; Aquilano, K.

10.1101/664649 — pathology — Posted on 2019-06-10

2320 A systems chemoproteomic analysis of acyl-CoA signaling networks

Levy, M. J.; Montgomery, D. C.; Sardiu, M. E.; Thorpe, A. L.; Fox, S. D.; Lin, Q.; Andresson, T.; Florens, L.; Washburn, M. P.; Meier, J. L.

10.1101/665281 — biochemistry — Posted on 2019-06-10

2321 Computational Intractability Law Molds the Topology of Biological Networks

Atiia, A. A.; Hopper, C.; Inoue, K.; Vidal, S.; Waldispuhl, J.

10.1101/510495 — systems biology — Posted on 2019-06-10

2322 Modelling bacterial twitching in fluid flows: a CFD-DEM approach

Jayathilake, P. G.; Li, B.; Zuliani, P.; Curtis, T.; Chen, J.

10.1101/648915 — biophysics — Posted on 2019-06-10

2323 DOT: Gene-set analysis by combining decorrelated association statistics

Vsevolozhskaya, O.; Shi, M.; Hu, F.; Zaykin, D.

10.1101/665133 — genetics — Posted on 2019-06-10

2324 The advantages and disadvantages of short- and long-read metagenomics to infer bacterial and eukaryotic community composition

Pearman, W.; Freed, N. E.; Silander, O. K.

10.1101/650788 — bioinformatics — Posted on 2019-06-09

2325 The Potency of Luliconazole, against Clinical and Environmental Aspergillus Nigri Complex

Hivary, S.; Fatahinia, M.; Taghipour, S.; Halvaeezadeh, M.; Zarei Mahmoudabadi, A.

10.1101/541185 — microbiology — Posted on 2019-06-09

2326 Functional brain network modeling in sub-acute stroke patients and healthy controls during rest and continuous attentive tracking

Dorum, E. S.; Kaufmann, T.; Alnaes, D.; Richard, G.; Kolskaar, K. K.; Engvig, A.; Sanders, A.-M.; Ulrichsen, K. M.; Ihle-Hansen, H.; Nordvik, J. E.; Westlye, L. T.

10.1101/644765 — neuroscience — Posted on 2019-06-09

2327 Build-up of serial dependence in color working memory

Barbosa, J.; Compte, A.

10.1101/503185 — neuroscience — Posted on 2019-06-09

2328 Connectivity profile of thalamic deep brain stimulation to effectively treat essential tremor

Al-Fatly, B.; Ewert, S.; Kuebler, D.; Kroneberg, D.; Horn, A.; Kuehn, A. A.

10.1101/575209 — neuroscience — Posted on 2019-06-09

2329 Metastable neural dynamics underlies cognitive performance across multiple behavioural paradigms

Alderson, T. H.; Bokde, A. L.; Kelso, J. A. S.; Maguire, L.; Coyle, D.

10.1101/657569 — neuroscience — Posted on 2019-06-09

2330 The Arabidopsis Diacylglycerol Kinase 4 is involved in nitric oxide-dependent pollen tube guidance and fertilization

Wong, A.; Donaldson, L.; Portes, M. T.; Eppinger, J.; Feijo, J.; Gehring, C.

10.1101/665810 — plant biology — Posted on 2019-06-09

2331 Rapid, precise, and reliable phenotyping of delay discounting using a Bayesian learning algorithm

Ahn, W.-Y.; Gu, H.; Shen, Y.; Haines, N.; Hahn, H.; Teater, J. E.; Myung, J. I.; Pitt, M. A.

10.1101/567412 — neuroscience — Posted on 2019-06-09

2332 Heading choices of flying Drosophila under changing angles of polarized light

Mathejczyk, T. F.; Wernet, M. F.

10.1101/665877 — neuroscience — Posted on 2019-06-09

2333 Deep Brain Stimulation induced normalization of the human functional connectome in Parkinson’s Disease

Horn, A.; Wenzel, G.; Irmen, F.; Huebl, J.; Li, N.; Neumann, W.-J.; Krause, P.; Bohner, G.; Scheel, M.; Kühn, A. A.

10.1101/537712 — neuroscience — Posted on 2019-06-09

2334 Integrated biphasic growth rate, gene expression, and cell-size homeostasis behaviour of single B. subtilis cells

Nordholt, N.; van Heerden, J. H.; Bruggeman, F. J.

10.1101/510925 — microbiology — Posted on 2019-06-09

2335 IgE-mediated regulation of IL-10 and type I interferon enhances rhinovirus-induced Th2 priming by primary human monocytes

Rowe, R. K.; Pyle, D. M.; Farrar, J. D.; Gill, M. A.

10.1101/432815 — immunology — Posted on 2019-06-09

2336 The NKCC1 antagonist bumetanide mitigates interneuronopathy associated with ethanol exposure In utero

Skorput, A. G. J.; Lee, S. M.; Yeh, P. W. L.; Yeh, H.

10.1101/665851 — developmental biology — Posted on 2019-06-09

2337 High-throughput single-cell proteomics quantifies the emergence of macrophage heterogeneity

Specht, H.; Emmott, E.; Koller, T.; Slavov, N.

10.1101/665307 — systems biology — Posted on 2019-06-09

2338 Expansion of a core regulon by transposable elements promotes Arabidopsis chemical diversity and pathogen defense

Barco, B.; Kim, Y.; Clay, N. K.

10.1101/368340 — plant biology — Posted on 2019-06-09

2339 A robust benchmark for germline structural variant detection

Zook, J. M.; Hansen, N. F.; Olson, N. D.; Chapman, L. M.; Mullikin, J. C.; Xiao, C.; Sherry, S.; Koren, S.; Phillippy, A. M.; Boutros, P. C.; Ebrahim, S. M.; Huang, V.; Rouette, A.; Alexander, N.; Mason, C. C.; Hajirasouliha, I. C.; Ricketts, C. C.; Lee, J.; Tearle, R.; Fiddes, I. T.; Barrio, A. M.; Wala, J.; Carroll, A.; Ghaffari, N. C.; Rodriguez, O. L.; Bashir, A.; Jackman, S.; Farrell, J. J.; Wenger, A. M.; Alkan, C.; Soylev, A.; Schatz, M. C.; Garg, S.; Church, G.; Marschall, T.; Chen, K.; Fan, X.; English, A. C.; Rosenfeld, J. D.; Zhou, W.; Mills, R. E.; Sage, J. M.; Davis, J. R.; Kaiser

10.1101/664623 — genomics — Posted on 2019-06-09

2340 Modern human origins: multiregional evolution of autosomes and East Asia origin of Y and mtDNA

Yuan, D.; Lei, X.; Gui, Y.; Wang, M.; Zhang, Y.; Zhu, Z.; Wang, D.; Yu, J.; Huang, S.

10.1101/101410 — evolutionary biology — Posted on 2019-06-09

2341 MetaPhat: Detecting and decomposing multivariate associations from univariate genome-wide association statistics

Lin, J.; Tabassum, R.; Ripatti, S.; Pirinen, M.

10.1101/661421 — bioinformatics — Posted on 2019-06-09

2342 Birth weight predicts psychiatric and physical health, cognitive function, and DNA methylation differences in an adult population

Madden, R. A.; McCartney, D. L.; Walker, R. M.; Hillary, R. F.; Bermingham, M. L.; Rawlik, K.; Morris, S. W.; Campbell, A.; Porteous, D. J.; Deary, I. J.; Evans, K. L.; Hafferty, J.; McIntosh, A. M.; Marioni, R. E.

10.1101/664045 — genomics — Posted on 2019-06-09

2343 The effect of sex and underlying disease on the genetic association of QT interval and sudden cardiac death

Mitchell, R. N.; Ashar, F. N.; Jarvelin, M.-R.; Froguel, P.; Sotoodehnia, N.; Brody, J. A.; Sebert, S.; Huikuri, H.; Rioux, J.; Goyette, P.; Newcomb, C. E.; Junttila, M. J.; Arking, D. E.

10.1101/664300 — genetics — Posted on 2019-06-09

2344 Leveraging Family History in Case-Control Analyses of Rare Variation

Solis-Lemus, C.; Fischer, S. T.; Todor, A.; Liu, C.; Leslie, E. J.; Cutler, D. J.; Ghosh, D.; Epstein, M. P.

10.1101/665075 — genetics — Posted on 2019-06-09

2345 Differences in perceived duration between plausible biological and non-biological stimuli

Giorjiani, G. M.; Biazoli, C. E.; Caetano, M. S.

10.1101/664193 — neuroscience — Posted on 2019-06-09

2346 Auxin promotion of seedling growth via ARF5 is dependent on the brassinosteroid-regulated transcription factors BES1 and BEH4.

Galstyan, A.; Nemhauser, J. L.

10.1101/664144 — plant biology — Posted on 2019-06-09

2347 Links between central CB1-receptor availability and peripheral endocannabinoids in patients with first episode psychosis

Dickens, A.; Borgan, F.; Laurikainen, H.; Lamichhane, S.; Marques, T.; Ronkko, T.; Veronese, M.; Lindeman, T.; METSY Investigators, ; Hyotylainen, T.; Howes, O.; Hietala, J.; Oresic, M.

10.1101/664086 — neuroscience — Posted on 2019-06-09

2348 Neurally-constrained modeling of human gaze strategies in a change blindness task

Jagatap, A.; Jain, H.; Purokayastha, S.; Sridharan, D.

10.1101/663989 — neuroscience — Posted on 2019-06-09

2349 Transdiagnostic phenotyping reveals a range of metacognitive deficits associated with compulsivity

Seow, T. X.; Gillan, C.

10.1101/664003 — neuroscience — Posted on 2019-06-09

2350 Lineage hierarchies and stochasticity ensure the long-term maintenance of adult neural stem cells

Than-Trong, E.; Kiani, B.; Dray, N.; Ortica, S.; Simons, B. D.; Rulands, S.; Alunni, A.; Bally-Cuif, L.

10.1101/663922 — neuroscience — Posted on 2019-06-09

2351 Absence of Replication fork associated factor CTF4 and F-box motif Encoding Gene SAF1 leads to reduction in Cell Size and Stress Tolerance Phenotype in S. cerevisiae

Sharma, M.; Singh, S.; Verma, V.; Bairwa, N. K.

10.1101/664185 — genetics — Posted on 2019-06-09

2352 Targeted Clinical Metabolomics Platform for the Stratification of Diabetic Patients

Ahonen, L.; Jantti, S.; Suvitaival, T.; Thelaide, S.; Risz, C.; Kostiainen, R.; Rossing, P.; Oresic, M.; Hyotylainen, T.

10.1101/664052 — biochemistry — Posted on 2019-06-09

2353 Nanopore device-based fingerprinting of RNA oligos and microRNAs enhanced with an Osmium tag.

Kanavarioti, A.; Sultan, M.

10.1101/664169 — genomics — Posted on 2019-06-09

2354 A universal scaling method for biodiversity-ecosystem functioning relationships

Barry, K. E.; Pinter, G. A.; Strini, J. W.; Yang, K.; Lauko, I. G.; Schnitzer, S. A.; Cowles, J.; Mori, A. S.; Williams, L.; Reich, P. B.; Wright, A. J.

10.1101/662783 — ecology — Posted on 2019-06-09

2355 Multi-scale spatial heterogeneity enhances particle clearance in airway ciliary arrays

Ramirez-San Juan, G. R.; Mathijssen, A. J. T. M.; He, M.; Jan, L.; Marshall, W.; Prakash, M.

10.1101/665125 — biophysics — Posted on 2019-06-09

2356 NeuronUnit: A package for data-driven validation of neuron models using SciUnit

Gerkin, R. C.; Birgiolas, J.; Jarvis, R. J.; Omar, C.; Crook, S. M.

10.1101/665331 — neuroscience — Posted on 2019-06-09

2357 CLIJ: Enabling GPU-accelerated image processing in Fiji

Haase, R.; Royer, L. A.; Steinbach, P.; Schmidt, D.; Dibrov, A.; Schmidt, U.; Weigert, M.; Maghelli, N.; Tomancak, P.; Jug, F.; Myers, E. W.

10.1101/660704 — bioinformatics — Posted on 2019-06-09

2358 Modeling microbial diversity with metabolic trade-offs

Li, Z.; Liu, B.; Li, S. H.-J.; King, C. G.; Gitai, Z.; Wingreen, N. S.

10.1101/664698 — systems biology — Posted on 2019-06-09

2359 Magainin 2 and PGLa in Bacterial Membrane Mimics I: Peptide-Peptide and Lipid-Peptide Interactions

Pachler, M.; Kabelka, I.; Appavou, M.-S.; Lohner, K.; Vacha, R.; Pabst, G.

10.1101/664359 — biophysics — Posted on 2019-06-09

2360 The impact of CO2/HCO3- availability on anaplerotic flux in PDHC-deficient Corynebacterium glutamicum strains

Krüger, A.; Wiechert, J.; Gätgens, C.; Polen, T.; Mahr, R.; Frunzke, J.

10.1101/663856 — microbiology — Posted on 2019-06-09

2361 Zebrafish mbnl mutants model molecular and physical phenotypes of human MBNL loss of function disorders

Hinman, M. N.; Richardson, J. I.; Sockol, R. A.; Aronson, E. D.; Stednitz, S. J.; Murray, K. N.; Berglund, J. A.; Guillemin, K.

10.1101/665380 — molecular biology — Posted on 2019-06-08

2362 Smoking and blood DNA methylation: novel associations, replication of previous findings and assessment of reversibility

Dugue, P.-A.; Jung, C.-H.; Joo, J. E.; Wang, X.; Wong, E. M.; Makalic, E.; Schmidt, D.; Baglietto, L.; Severi, G.; Southey, M. C.; English, D. R.; Giles, G. G.; Milne, R. L.

10.1101/660878 — genomics — Posted on 2019-06-08

2363 The Geometry of Masking in Neural Populations

Ringach, D. L.

10.1101/665174 — neuroscience — Posted on 2019-06-08

2364 Multimodal memory components and their long-term dynamics identified in cortical layers II/III but not layer Vb

Li, D.; Wang, G.; Xie, H.; Hu, Y.; Guan, J.-S.; Hilgetag, C. C.

10.1101/665539 — neuroscience — Posted on 2019-06-08

2365 Skill acquisition increases myelination and strengthens functional connectivity in the sensorimotor circuit of the adult rat

Sampaio-Baptista, C.; de Weijer, A.; van der Toorn, A.; Otte, W. M.; Winkler, A. M.; Lazari, A.; Salvan, P.; Bannerman, D. M.; Dijkhuizen, R. M.; Johansen-Berg, H.

10.1101/661546 — neuroscience — Posted on 2019-06-08

2366 Quantification of anticipation of excitement with three-axial model of emotion with EEG

Machizawa, M. G.; Lisi, G.; Kanayama, N.; Mizuochi, R.; Makita, K.; Sasaoka, T.; Yamawaki, S.

10.1101/659979 — neuroscience — Posted on 2019-06-08

2367 Molecular basis of calmodulin-dependent calcineurin activation

Sun, B.; Vaughan, D.; Tikunova, S.; Creamer, T.; Davis, J.; Kekenes-Huskey, P.

10.1101/665158 — molecular biology — Posted on 2019-06-08

2368 Deep Learning Approach to Identifying Breast Cancer Subtypes Using High-Dimensional Genomic Data

Chen, R.; Yang, L.; Goodison, S.; Sun, Y.

10.1101/629865 — bioinformatics — Posted on 2019-06-08

2369 A luciferase-based assay identifies niclosamide derivatives antagonizing Mcl-1 through post-translational down-regulation

Liu, Q.; Atkinson, J. M.; Gebru, M. T.; Clements, K.; Moldovan, G. L.; Wang,

10.1101/665505 — biochemistry — Posted on 2019-06-08

2370 In vitro and in vivo efficacy of the combination of colistin and endolysins against clinical strains of Multi-Drug Resistant (MDR) pathogens

Blasco, L.; Ambroa, A.; Trastoy, R.; Perez-Nadales, E.; Fernandez-Cuenca, F.; Torre-Cisneros, J.; Oteo-Iglesias, J.; Oliver, A.; Canton, R.; Kidd, T. J.; Navarro, F.; Miro, E.; Pascual, A.; Bou, G.; Martinez-Martinez, L.; Tomas, M.

10.1101/662460 — microbiology — Posted on 2019-06-08

2371 Magnus Representation of Genome Sequences

Wu, C.; Ren, S.; Wu, J.; Xia, K.

10.1101/588582 — genomics — Posted on 2019-06-08

2372 Yet another de novo genome assembler

Vaser, R.; Sikic, M.

10.1101/656306 — bioinformatics — Posted on 2019-06-08

2373 Polyfunctional tumor-reactive T cells are effectively expanded from non-small cell lung cancers, and correlate with an immune-engaged T cell profile

de Groot, R.; van Loenen, M. M.; Guislain, A.; Nicolet, B. P.; Freen-van Heeren, J. J.; Verhagen, O.; van den Heuvel, M. M.; de Jong, J.; Burger, P.; van der Schoot, E.; Spaapen, R. M.; Amsen, D.; Haanen, J. B.; Monkhorst, K.; Hartemink, K. J.; Wolkers, M. C.

10.1101/426221 — immunology — Posted on 2019-06-08

2374 Nanopore sequencing of the pharmacogene CYP2D6 allows simultaneous haplotyping and detection of duplications

Liau, Y.; Maggo, S.; Miller, A. L.; Pearson, J. F.; Kennedy, M. A.; Cree, S. L.

10.1101/576280 — genetics — Posted on 2019-06-08

2375 Fierce selection and interference in B-cell repertoire response to chronic HIV-1

Nourmohammad, A.; Otwinowski, J.; Luksza, M.; Mora, T.; Walczak, A. M.

10.1101/271130 — immunology — Posted on 2019-06-08

2376 MOBN: an interactive database of multi-omics biological networks

Zhang, C.; Arif, M.; Li, X.; Lee, S.; Tebani, A.; Zhou, W.; Piening, B.; Fagerberg, L.; Price, N.; Hood, L.; Snyder, M.; Nielsen, J.; Uhlen, M.; Mardinoglu, A.

10.1101/662502 — bioinformatics — Posted on 2019-06-08

2377 Hand Knob Area of Motor Cortex in People with Tetraplegia Represents the Whole Body in a Modular Way

Willett, F. R.; Deo, D. R.; Avansino, D. T.; Rezaii, P.; Hochberg, L. R.; Henderson, J.; Shenoy, K.

10.1101/659839 — neuroscience — Posted on 2019-06-08

2378 Dynamic size-weight changes after object lifting reduce the size-weight illusion

van Polanen, V.; Davare, M.

10.1101/662999 — neuroscience — Posted on 2019-06-08

2379 Human subsystems of medial temporal lobes extend locally to amygdala nuclei and globally to an allostatic-interoceptive system

Ruiz-Rizzo, A. L.; Beissner, F.; Finke, K.; Mueller, H. J.; Zimmer, C.; Pasquini, L.; Sorg, C.

10.1101/659854 — neuroscience — Posted on 2019-06-08

2380 The Cellular Immunity Agent-Based Model (CIABM): A computational model to examine the role of cellular immunity in viral infection

Cockrell, R. C.; Botten, J.; Diehl, S. A.; An, G.

10.1101/663930 — immunology — Posted on 2019-06-08

2381 Characteristics and Evolutionary analysis of Photosynthetic Gene Clusters on Extrachromosomal Replicons: from streamlined plasmids to chromids

Liu, Y.; Zheng, Q.; Lin, W.; Jiao, N.

10.1101/663864 — genomics — Posted on 2019-06-08

2382 Species-specific recognition of Sulfolobales mediated by UV inducible pili and S-layer glycosylation patterns

van Wolferen, M.; Shajahan, A.; Heinrich, K.; Brenziger, S.; Black, I.; Wagner, A.; Briegel, A.; Azadi, P.; Albers, S.-V.

10.1101/663898 — microbiology — Posted on 2019-06-08

2383 Defining functional neuraminidase inhibitor drug resistance motifs in avian influenza viruses and the consequential impact on virus fitness in chicken cells.

Bialy, D.; Shelton, H.

10.1101/663872 — microbiology — Posted on 2019-06-08

2384 Associations between meteorological variables, vector indices and dengue hospitalizations in Can Tho, Vietnam: a field survey

Toai, N. P.; Chinh, D. V.; Huy, N. N.; Vittor, A. Y.

10.1101/664599 — epidemiology — Posted on 2019-06-08

2385 Determinants of Severe Acute Malnutrition among Children age 6-59 Months Old in Two Public Hospitals, North West Ethiopia: a Case Control Study

Damtew, A. N.; Asres, D. T.; Prasad, R. P.

10.1101/664516 — epidemiology — Posted on 2019-06-08

2386 SINEUP long non-coding RNA acts via PTBP1 and HNRNPK to promote translational initiation assemblies

Naoko, T.; Takahashi, H.; Zucchelli, S.; Gustincich, S.; Carninci, P.

10.1101/664029 — molecular biology — Posted on 2019-06-08

2387 The small noncoding RNA sr8384 determines solvent synthesis and cell growth in industrial solventogenic clostridia

Yang, Y.; Lang, N.; Zhang, H.; Zhang, L.; Chai, C.; Jiang, W.; Gu, Y.

10.1101/663880 — microbiology — Posted on 2019-06-08

2388 Socioeconomic factors associated with dysentery in children under-five years from developing countries

Pinzon-Rondon, A. M.; Zarate-Ardila, C. J.; Parra-Correa, L.; Zarate-Ardila, A.; Lozada-Calderon, P.; Di Cecco, L.

10.1101/664607 — epidemiology — Posted on 2019-06-08

2389 The GATA3 X308_Splice breast cancer mutation is a hormone context-dependent oncogenic driver

Hruschka, N.; Subijana, M.; Grana-Castro, O.; Del Cano-Ochoa, F.; Pare Brunet, L.; Sagrera, A.; De Reynies, A.; Andreu, D.; Sutton, J.; Chernukhin, I.; Chin, S.-F.; Caldas, C.; Lluch, A.; Burgues, O.; Bermejo, B.; Ramon-Maiques, S.; Carroll, J.; Prat, A.; Real, F. X.; Martinelli, P.

10.1101/664367 — cancer biology — Posted on 2019-06-08

2390 De novo β-alanine synthesis in α-proteobacteria involves a β-alanine synthase from the uracil degradation pathway

Lopez-Samano, M.; Lozano-Aguirre Beltran, L. F.; Sanchez-Thomas, R.; Davalos, A.; Villasenor, T.; Garcia-Garcia, J. D.; Garcia-de los Santos, A.

10.1101/663849 — microbiology — Posted on 2019-06-08

2391 Burden of tumor mutations, neoepitopes, and other variants are cautionary predictors of cancer immunotherapy response and overall survival

Wood, M. A.; Weeder, B. R.; David, J. K.; Nellore, A.; Thompson, R. F.

10.1101/665026 — cancer biology — Posted on 2019-06-08

2392 The p38MAPK-MK2-HSP27 Pathway Regulates the mRNA Stability of the Senescence-Associated Secretory Phenotype

Moore, H. R.; Alspach, E.; Hirsch, J. L.; Monahan, J.; Stewart, S. A.

10.1101/664755 — cancer biology — Posted on 2019-06-08

2393 Identification of nutrient deficiency in bean plants by prompt chlorophyll fluorescence measurements and Artificial Neural Networks

Aleksandrov, V.

10.1101/664235 — biophysics — Posted on 2019-06-08

2394 A Single Cell Transcriptomic Atlas Characterizes Aging Tissues in the Mouse

The Tabula Muris Consortium, ; Pisco, A. O.; Schaum, N.; McGeever, A.; Karkanias, J.; Neff, N. F.; Darmanis, S.; Wyss-Coray, T.; Quake, S. R.

10.1101/661728 — cell biology — Posted on 2019-06-08

2395 RanGTP induces an effector gradient of XCTK2 and importin α/β for spindle microtubule cross-linking

Ems-McClung, S. E.; Emch, M.; Zhang, S.; Mahnoor, S.; Weaver, L. N.; Walczak, C. E.

10.1101/664821 — cell biology — Posted on 2019-06-08

2396 Tumor-draining lymph nodes resection and chemotherapy have diverse impacts on cancer immunotherapies

Zhao, X.; Kassaye, B.; Wangmo, D.; Lou, E.; Subramanian, S.

10.1101/664912 — cancer biology — Posted on 2019-06-08

2397 Genomic architecture of Shh dependent cochlear morphogenesis

Muthu, V.; Rohacek, A.; Yao, Y.; Rakowiecki, S.; Brown, A.; Zhao, Y.-T.; Myers, J.; Won, K.-J.; Ramdas, S.; Brown, C.; Peterson, K.; Epstein, D.

10.1101/665091 — developmental biology — Posted on 2019-06-08

2398 Gastruloid development competence discriminates different states of pluripotency between naïve and primed

Cermola, F.; D'Aniello, C.; Tate, R.; De Cesare, D.; Martinez-Arias, A.; Minchiotti, G.; Patriarca, E. J.

10.1101/664920 — developmental biology — Posted on 2019-06-08

2399 Vital role for Plasmodium berghei Kinesin8B in axoneme assembly during male gamete formation and mosquito transmission

Depoix, D.; Marques, S. R.; Ferguson, D. J. P.; Chaouch, S.; Duguet, T.; Sinden, R. E.; Grellier, P.; Kohl, L.

10.1101/664375 — cell biology — Posted on 2019-06-08

2400 The role of the endoplasmic reticulum in in vivo cancer FDG kinetics

Scussolini, M.; cossu, v.; Marini, C.; Sambuceti, G.; Caviglia, G.; piana, m.

10.1101/664417 — cancer biology — Posted on 2019-06-08

2401 MCHM acts as a hydrotrope, altering the balance of metals in yeast

Pupo, A.; Ayers, M. C.; Sherman, Z. N.; Vance, R. J.; Cumming, J. R.; Gallagher, J. E. G.

10.1101/606426 — biochemistry — Posted on 2019-06-07

2402 Engineered Retroviruses as Fluorescent Biological Reference Particles for Small Particle Flow Cytometry

Tang, V. A.; Fritzsche, A. K.; Renner, T. M.; Burger, D.; van der Pol, E.; Lannigan, J. A.; Brittain, G. C.; Welsh, J. A.; Jones, J. C.; Langlois, M.-A.

10.1101/614461 — cell biology — Posted on 2019-06-07

2403 Machine learning reveals bilateral distribution of somatic L1 insertions in human neurons and glia

10.1101/660779 — genomics — Posted on 2019-06-07

2404 Highly Specific Enrichment of Rare Nucleic Acids using Thermus Thermophilus Argonaute with Applications in Cancer Diagnostics

Song, J.; Hegge, J. W.; Mauk, M. G.; Chen, J.; Till, J. E.; Bhagwat, N.; Azink, L. T.; Peng, J.; Sen, M.; Mays, J.; Carpenter, E.; Oost, J. v. d.; Bau, H. H.

10.1101/491738 — bioengineering — Posted on 2019-06-07

2405 From expression footprints to causal pathways: contextualizing large signaling networks with CARNIVAL

Liu, A.; Trairatphisan, P.; Gjerga, E.; Didangelos, A.; Barratt, J.; Saez-Rodriguez, J.

10.1101/541888 — systems biology — Posted on 2019-06-07

2406 The association between reserve, cognitive ability and performance-related brain activity during episodic encoding and retrieval across the adult lifespan

Elshiekh, A.; Subramaniapillai, S.; Rajagopal, S.; Pasvanis, S.; Ankudowich, E.; Rajah, M.

10.1101/535674 — neuroscience — Posted on 2019-06-07

2407 Simulation of the effect of diffusion on asymmetric spin echo based quantitative BOLD: An investigation of the origin of deoxygenated blood volume overestimation

Stone, A. J.; Holland, N. C.; Berman, A. J.; Blockley, N.

10.1101/570697 — neuroscience — Posted on 2019-06-07

2408 Multiple memories can be simultaneously reactivated during sleep as effectively as a single memory

Schechtman, E.; Antony, J. W.; Lampe, A.; Wilson, B. J.; Norman, K. A.; Paller, K. A.

10.1101/662015 — neuroscience — Posted on 2019-06-07

2409 Intrinsic temporal tuning of neurons in the optic tectum is shaped by multisensory experience

Busch, S. E.; Khakhalin, A. S.

10.1101/540898 — neuroscience — Posted on 2019-06-07

2410 Resting-state \"Physiological Networks\"

Chen, J.; Lewis, L.; Chang, C.; Fultz, N.; Ohringer, N.; Rosen, B.; Polimeni, J.

10.1101/660787 — neuroscience — Posted on 2019-06-07

2411 The Role of Adaptation in Generating Monotonic Rate Codes in Auditory Cortex

Lee, J. H.; Wang, X.; Bendor, D.

10.1101/661751 — neuroscience — Posted on 2019-06-07

2412 Environmental (e)DNA detection of the invasive pink salmon Oncorhynchus gorbuscha during the 2017 Norwegian invasion

Gargan, L. M.; Fossoy, F.; Mo, T. A.; Carlsson, J. E. L.; Ball, B.; Carlsson, J.

10.1101/651554 — genetics — Posted on 2019-06-07

2413 Integrating population genetics to define conservation units from the core to the edge of Rhinolophus ferrumequinum western range

Tournayre, O.; Pons, J.-B.; Leuchtmann, M.; Leblois, R.; Piry, S.; Filippi-Codaccioni, O.; Loiseau, A.; Duhayer, J.; Garin, I.; Mathews, F.; Puechmaille, S.; Charbonnel, N.; Pontier, D.

10.1101/662643 — evolutionary biology — Posted on 2019-06-07

2414 Investigating Transfusion-Related Sepsis using Culture-Independent Metagenomic Sequencing

Crawford, E. D.; Kamm, J.; Miller, S.; Li, L.; Caldera, S.; Lyden, A. D.; Yokoe, D.; Nichols, A.; Tran, N. K.; Barnhard, S.; Conner, P. M.; Nambiar, A.; Zinter, M. S.; Moayeri, M.; Hayakawa Serpa, P.; Prince, B. C.; Quan, J.; Sit, R.; Tan, M.; Phelps, M.; DeRisi, J. S.; Tato, C. M.; Langelier, C.

10.1101/653337 — microbiology — Posted on 2019-06-07

2415 Single-cell chromatin accessibility analysis of mammary gland development reveals cell state transcriptional regulators and cellular lineage relationships

Chung, C.-Y.; Ma, Z.; Dravis, C.; Preissl, S.; Poirion, O.; Luna, G.; Hou, X.; Giraddi, R. R.; Ren, B.; Wahl, G. M.

10.1101/624957 — genomics — Posted on 2019-06-07

2416 KLF4 is involved in the organization and regulation of pluripotency-associated 3D enhancer networks

Di Giammartino, D. C.; Kloetgen, A.; Polyzos, A.; Liu, Y.; Kim, D.; Murphy, D.; Abuhashem, A.; Cavaliere, P.; Aronson, B.; Shah, V.; Dephoure, N.; Stadtfeld, M.; Tsirigos, A.; Apostolou, E.

10.1101/382473 — molecular biology — Posted on 2019-06-07

2417 Adapting genotyping-by-sequencing and variant calling for heterogeneous stock rats

Gao, J.; Gileta, A. F.; Bimschleger, H. V.; St. Pierre, C. L.; Gopalakrishnan, S.; Palmer, A. A.

10.1101/523043 — genetics — Posted on 2019-06-07

2418 The impact of worldwide, national and sub-national severity distributions in Burden of Disease studies: a case study of individual cancer types in Scotland

Wyper, G. M.; Grant, I.; Fletcher, E.; McCartney, G.; Stockton, D. L.

10.1101/654327 — epidemiology — Posted on 2019-06-07

2419 New approach and new program for analyses of false negatives-contaminated data in medicine and biology

Flegr, J.; Turecek, P.

10.1101/660324 — epidemiology — Posted on 2019-06-07

2420 A new colorectal cancer risk prediction model incorporating family history, personal and environmental factors

Zheng, Y.; Hua, X.; Win, A. K.; MacInnis, R. J.; Gallinger, S.; Le Marchand, L.; Lindor, N. M.; Baron, J. A.; Hopper, J. L.; Dowty, J. G.; Antoniou, A. C.; Zheng, J.; Jenkins, M. A.; Newcomb, P. A.

10.1101/662106 — epidemiology — Posted on 2019-06-07

2421 Nowcasting by Bayesian Smoothing: A flexible, generalizable model for real-time epidemic tracking

McGough, S. F.; Johansson, M. A.; Lipsitch, M.; Menzies, N. A.

10.1101/663823 — epidemiology — Posted on 2019-06-07

2422 Properties of the full random effect modelling approach with missing covariates

Nyberg, J.; Jonsson, E. N.; Karlsson, M. O.; Häggström, J.

10.1101/656470 — epidemiology — Posted on 2019-06-07

2423 The impact of delayed switch to second-line antiretroviral therapy on mortality, depending on failure time definition and CD4 count at failure

Bell-Gorrod, H.; Fox, M. P.; Boulle, A.; Prozesky, H.; Wood, R.; Tanser, F.; Davies, M.-A.; Schomaker, M.

10.1101/661629 — epidemiology — Posted on 2019-06-07

2424 Modeling missing cases and transmission links in networks of extensively drug-resistant tuberculosis in KwaZulu-Natal, South Africa

Nelson, K. N.; Gandhi, N. R.; Mathema, B.; Lopman, B.; Brust, J. C.; Auld, S. C.; Ismail, N.; Omar, S. V.; Brown, T. S.; Allana, S.; Campbell, A.; Moodley, P.; Mlisana, K.; Shah, N. S.; Jenness, S. M.

10.1101/655969 — epidemiology — Posted on 2019-06-07

2425 A prospective analysis of circulating plasma metabolomics and ovarian cancer risk

Zeleznik, O. A.; Eliassen, A. H.; Kraft, P.; Poole, E. M.; Rosner, B.; Jeanfavre, S.; Deik, A.; Bullock, K.; Hitchcock, D.; Avila-Pancheco, J.; Clish, C. B.; Tworoger, S. S.

10.1101/654962 — epidemiology — Posted on 2019-06-07

2426 Photovoltaic stimulation efficiently evokes network-mediated activity of retinal ganglion cells

Chenais, N. A.; Airaghi Leccardi, M. J.; Ghezzi, D.

10.1101/652404 — neuroscience — Posted on 2019-06-07

2427 The next Zika virus outbreak will affect young women of reproductive age disproportionately: mathematical modeling study

Counotte, M. J.; Althaus, C. L.; Low, N.; Riou, J.

10.1101/661223 — epidemiology — Posted on 2019-06-07

2428 Mendelian Randomization Analysis Dissects the Relationship between NAFLD, T2D, and Obesity and Provides Implications to Precision Medicine

Liu, Z.; Zhang, Y.; Graham, S.; Pique-Regi, R.; Dong, X. C.; Chen, Y. E.; Willer, C.; Liu, W.

10.1101/657734 — epidemiology — Posted on 2019-06-07

2429 Sensory nutrition: The role of taste in the reviews of commercial food products

Reed, D. R.; Mainland, J. D.; Arayata, C. J.

10.1101/662585 — neuroscience — Posted on 2019-06-07

2430 Sequence-based prediction of olfactory receptor responses

Chepurwar, S.; Gupta, A.; Haddad, R.; Gupta, N.

10.1101/664383 — neuroscience — Posted on 2019-06-07

2431 Kinetic mechanisms of fast glutamate sensing by fluorescent protein probes

Coates, C.; Kerruth, S.; Helassa, N.; Torok, K.

10.1101/664458 — biophysics — Posted on 2019-06-07

2432 Build-up of serial dependence in color working memory

Barbosa, J.; Compte, A.

10.1101/503185 — neuroscience — Posted on 2019-06-07

2433 NoRCE: Non-coding RNA Sets Cis Enrichment Tool

Olgun, G.; Nabi, A.; Tastan, O.

10.1101/663765 — bioinformatics — Posted on 2019-06-07

2434 Plasticity in auditory categorization is supported by differential engagement of the auditory-linguistic network

Bidelman, G.; Walker, B.

10.1101/663799 — neuroscience — Posted on 2019-06-07

2435 Genetic drift does not sufficiently explain patterns of electric signal variation among populations of the mormyrid electric fish Paramormyrops kingsleyae

Picq, S.; Sperling, J.; Cheng, C.; Carlson, B.; Gallant, J. R.

10.1101/154047 — evolutionary biology — Posted on 2019-06-07

2436 Case-control design identifies ecological drivers of endemic coral diseases

Caldwell, J.; Aeby, G.; Heron, S. F.; Donahue, M. J.

10.1101/662320 — ecology — Posted on 2019-06-07

2437 High risk of the Fall Armyworm invading into Japan and the Korean Peninsula via overseas migration

Ma, J.; Wang, Y.-P.; Wu, M.-F.; Gao, B.-Y.; Liu, J.; Lee, G.-S.; Otuka, A.; Hu, G.

10.1101/662387 — animal behavior and cognition — Posted on 2019-06-07

2438 Misfolded α-synuclein causes hyperactive respiration without functional deficit in live neuronal cells

Ugalde, C.; Annesley, S.; Mroczek, K.; Lawson, V.; Fisher, P.; Finkelstein, D.; Hill, A.

10.1101/663815 — neuroscience — Posted on 2019-06-07

2439 Stratifying major depressive disorder by polygenic risk for schizophrenia in relation to structural brain measures

Harris, M. A.; Shen, X.; Cox, S. R.; Gibson, J.; Adams, M. J.; Clarke, T.-K.; Deary, I. J.; Lawrie, S. M.; McIntosh, A. M.; Whalley, H. C.

10.1101/663724 — neuroscience — Posted on 2019-06-07

2440 Genomic and phenotypic comparison of environmental and patient-derived isolates of Pseudomonas aeruginosa suggest that antimicrobial resistance is rare within the environment

Ramsay, K. A.; Wardell, S. J.; Patrick, W. M.; Brockway, B.; Reid, D. W.; Winstanley, C.; Bell, S. C.; Lamont, I. L.

10.1101/663674 — microbiology — Posted on 2019-06-07

2441 Genetic, morphometric, and molecular analyses of interspecies differences in head shape and hybrid developmental defects in the wasp genus Nasonia

Cohen, L. B.; Edwards, R.; Moody, D.; Arsala, D.; Werren, J. H.; Lynch, J. A.

10.1101/663732 — evolutionary biology — Posted on 2019-06-07

2442 An inducible Cre mouse line to sparsely target nervous system cells, including Remak Schwann cells

Dougherty, J.; Sapkota, D.

10.1101/663716 — neuroscience — Posted on 2019-06-07

2443 Expression of inducible nitric oxide synthase, nitric oxide and salivary oxidized LDL as early markers of severe dengue

Hapugaswatte, H.; Perera, S. S.; Premaratna, R.; Seneviratne, K. N.; Jayathilaka, N.

10.1101/664151 — molecular biology — Posted on 2019-06-07

2444 NF-κB-c-REL impairement drives human stem cells into the oligodendroglial fate

Ruiz-Perera, L. M.; Greiner, J. F.; Kaltschmidt, C.; Kaltschmidt, B.

10.1101/664060 — cell biology — Posted on 2019-06-07

2445 A key interfacial residue identified with in-cell structure characterization of a Class-A GPCR dimer

Zhang, W.-P.; Yang, J.; Gong, Z.; Lu, Y.-B.; Xu, C.-J.; Wei, T.-F.; Yang, M.-S.; Zhan, T.-W.; Yang, Y.-H.; Li, L.; Liu, J.-F.; Tang, C.

10.1101/664094 — biochemistry — Posted on 2019-06-07

2446 Retroviral integration into nucleosomes throughDNA looping and sliding along the histone octamer

Wilson, M. D.; Renault, L.; Maskell, D. P.; Ghoneim, M.; Pye, V. E.; Nans, A.; Rueda, D. S.; Cherepanov, P.; Costa, A.

10.1101/663336 — biochemistry — Posted on 2019-06-07

2447 Pre-existent adult sox10+ cardiomyocytes contribute to myocardial regeneration in the zebrafish

Sande-Melon, M.; Marques, I. J.; Galardi-Castilla, M.; Langa, X.; Perez-Lopez, M.; Botos, M.; Martinez-Guzman, G.; Ferreira-Francisco, D. M.; Pavlinic, D.; Benes, V.; Bruggmann, R.; Mercader, N.

10.1101/662536 — developmental biology — Posted on 2019-06-07

2448 Large-scale in-vitro production of red blood cells from human peripheral blood mononuclear cells

Heshusius, S. J.; Heideveld, E.; Burger, P.; Thiel-Valkhof, M.; Sellink, E.; Varga, E.; Ovchynnikova, E.; Visser, A.; Martens, J. H.; von Lindern, M. M.; van den Akker, E. M.

10.1101/659862 — cell biology — Posted on 2019-06-07

2449 Molecularly distinct cores coexist inside stress granules

Cirillo, L.; Cieren, A.; Gotta, M.

10.1101/663955 — cell biology — Posted on 2019-06-07

2450 An improved method for culturing myotubes on laminins for the robust clustering of postsynaptic machinery

Pezinski, M.; Daszczuk, P.; Pradhan, B. S.; Lochmuller, H.; Proszynski, T. J.

10.1101/664268 — cell biology — Posted on 2019-06-07

2451 Long acyl chain ceramides govern cholesterol and cytoskeleton dependence of membrane outer leaflet dynamics

Gupta, A.; Muralidharan, S.; Torta, F.; Wenk, M. R.; Wohland, T.

10.1101/663971 — biophysics — Posted on 2019-06-07

2452 Mindfulness meditation changes the boundary and configuration of the primary functional networks in the brain

Kajimura, S.; Masuda, N.; Lau, J. K.; Murayama, K.

10.1101/664573 — neuroscience — Posted on 2019-06-07

2453 Satellite glial cells modulate cholinergic transmission between sympathetic neurons

Enes, J.; Sona, S.; Gerard, N.; Mitchell, A. C.; Haburcak, M.; Birren, S.

10.1101/664557 — neuroscience — Posted on 2019-06-07

2454 A versatile method for circulating cell-free DNA methylome profiling by reduced representation bisulfite sequencing

De Koker, A.; Van Paemel, R.; De Wilde, B.; De Preter, K.; Callewaert, N.

10.1101/663195 — genomics — Posted on 2019-06-07

2455 Differential base-sharing between humans and Neanderthals: inter-breeding or greater mutability in heterozygotes?

Amos, W.

10.1101/664581 — evolutionary biology — Posted on 2019-06-07

2456 Practical and safe method of cryopreservation for clinical application of human adipose-derived mesenchymal stem cells without a programmable freezer or serum

Gao, S.; Takami, A.; Takeshita, K.; Niwa, R.; Kato, H.; Nakayama, T.

10.1101/664524 — cell biology — Posted on 2019-06-07

2457 Use of solvent extraction-indigenous microbial degradation technology to repair soils contaminated by high concentrations of mechanical oil

Chen, G.; Zheng, X.; Liu, A.

10.1101/664490 — plant biology — Posted on 2019-06-07

2458 The effects of arm swing amplitude and lower-limb asymmetry on gait stability

Hill, A.; Nantel, J.

10.1101/664565 — neuroscience — Posted on 2019-06-07

2459 Patterns of microbial colonization of human bone from surface-decomposed remains

Emmons, A. L.; Mundorff, A. Z.; Keenan, S. W.; Davoren, J.; Andronowski, J. M.; Carter, D. O.; DeBruyn, J. M.

10.1101/664482 — microbiology — Posted on 2019-06-07

2460 Development of a multi-locus typing scheme for an Enterobacteriaceae linear plasmid that mediates inter-species transfer of flagella

Robertson, J.; Lin, J.; Wren-Hedgus, A.; Arya, G.; Carrillo, C.; Nash, J. H. E.

10.1101/664508 — genomics — Posted on 2019-06-07

2461 Super-resolution imaging reveals changes in Escherichia coli SSB localization in response to DNA damage.

Bianco, P.; Zhao, T.; Wang, Z.; He, R.; Zhang, J. X.; Liu, Y.; Xu, F.; Lei, M.; Deci, M. B.; Nguyen, J.

10.1101/664532 — cell biology — Posted on 2019-06-07

2462 Personalized therapy design for liquid tumors via optimal control theory

Angaroni, F.; Graudenzi, A.; Rossignolo, M.; Maspero, D.; Calarco, T.; Piazza, R.; Montangero, S.; Antoniotti, M.

10.1101/662858 — bioinformatics — Posted on 2019-06-07

2463 A machine learning algorithm predicts molecular subtypes in pancreatic ductal adenocarcinoma with differential response to gemcitabine-based versus FOLFIRINOX chemotherapy

Kaissis, G.; Ziegelmayer, S.; Lohöfer, F.; Steiger, K.; Algül, H.; Muckenhuber, A.; Yen, H.-Y.; Rummeny, E.; Friess, H.; Schmid, R.; Weichert, W.; Siveke, J.; Braren, R.

10.1101/664540 — bioinformatics — Posted on 2019-06-07

2464 Intra-individual variability of sleep and nocturnal cardiac autonomic activity in elite female soccer players during an international tournament

Costa, J.; Figueiredo, P.; Nakamura, F.; Rago, V.; Rebelo, A.; Brito, J.

10.1101/664474 — physiology — Posted on 2019-06-07

2465 The cholinergic basal forebrain links sensory stimuli with delayed reinforcement to support learning

Guo, W.; Polley, D. B.

10.1101/663211 — neuroscience — Posted on 2019-06-07

2466 Predicting factors for long-term survival in patients with out-of-hospital cardiac arrest - a propensity score-matched analysis

Lahmann, A. L.; Bongiovanni, D.; berkefeld, A.; Kettern, M.; Martinez, L.; Okrojek, R.; Hoppmann, P.; Laugwitz, K.-L.; Kasel, M.; Cassese, S.; Byrne, R.; Kufner, S.; Xhepa, E.; Schunkert, H.; Kastrati, A.; Joner, M.

10.1101/664441 — epidemiology — Posted on 2019-06-07

2467 Language evolution to revolution: the jump from rich-vocabulary non-recursive communication system to recursive language 70,000 years ago was associated with acquisition of a novel component of imagination, called prefrontal synthesis

Vyshedskiy, A.

10.1101/166520 — evolutionary biology — Posted on 2019-06-07

2468 A DNA barcode reference library of the French Polynesian shore fishes

Delrieu-Trottin, E.; Williams, J. T.; Pitassy, D.; Driskell, A.; Hubert, N.; Viviani, J.; Cribb, T. H.; Espiau, B.; Galzin, R.; Kulbicki, M.; Lison de Loma, T.; Meyer, C.; Mourier, J.; Mou-Tham, G.; Parravicini, V.; Plantard, P.; Sasal, P.; Siu, G.; Tolou, N.; Veuille, M.; Weigt, L.; Planes, S.

10.1101/595793 — zoology — Posted on 2019-06-07

2469 The Pursuit of Pride: Outcomes achieved under Beliefs of Internal Control shape positive Affect and neural Dynamics in the vmPFC

Stolz, D. S.; Müller-Pinzler, L.; Krach, S.; Paulus, F. M.

10.1101/637207 — neuroscience — Posted on 2019-06-07

2470 Back-propagation learning in deep Spike-By-Spike networks

Rotermund, D.; Pawelzik, K. R.

10.1101/569236 — bioinformatics — Posted on 2019-06-07

2471 QUALITY OF LIFE IN MOTHERS OF CHILDREN WITH MICROCEPHALY IN THE NORTHEAST OF BRAZIL

Pereira, H. S. d. S.; Freitas Fernandes, C. C.; Nunes Ribeiro, C. J.; de Araujo Candido, A. C. S. M.; da Silva Nunes, M.; Dantas, D. V.; Barreto Alves, J. A.; Lima, A. G. C. F.; Pinto, J. S.; Ribeiro, M. d. C. O.

10.1101/663245 — neuroscience — Posted on 2019-06-07

2472 GABAergic cell loss in mice lacking autism-associated gene Sema6A

Menzel, K.; Gabor, S.; Yanagawa, Y.; Coksaygan, T.; Plachez, C.

10.1101/663419 — neuroscience — Posted on 2019-06-07

2473 Biophysical modeling of VIM to assess contributions of oscillatory activity to essential tremor

Lee, S.; Segar, D. J.; Asaad, W.; Jones, S.

10.1101/339846 — neuroscience — Posted on 2019-06-07

2474 Arbuscular mycorrhizal fungi, selenium, sulfur, silica-gel and biochar reduce arsenic uptake in plant biomass and improve nutritional quality in Pisum sativum

Alam, M. Z.; Hoque, M. A.; Ahammed, G. J.; Boggs, L. C.

10.1101/663120 — microbiology — Posted on 2019-06-07

2475 Kinetic analysis of yeast-yeast interactions in oenological conditions

Harle, O.; Legrand, J.; Tesniere, C.; Pradal, M.; Mouret, J.-R.; Nidelet, T.

10.1101/363531 — microbiology — Posted on 2019-06-07

2476 Multifaceted Hi-C benchmarking: what makes a difference in chromosome-scale genome scaffolding?

Kadota, M.; Nishimura, O.; Miura, H.; Tanaka, K.; Hiratani, I.; Kuraku, S.

10.1101/659623 — genomics — Posted on 2019-06-07

2477 Multiparametric phenotyping of compound effects on patient derived organoids

Betge, J.; Rindtorff, N.; Sauer, J.; Rauscher, B.; Dingert, C.; Gaitantzi, H.; Herweck, F.; Miersch, T.; Valentini, E.; Hauber, V.; Gutting, T.; Frank, L.; Belle, S.; Gaiser, T.; Buchholz, I.; Jesenofsky, R.; Haertel, N.; Zhan, T.; Fischer, B.; Breitkopf-Heinlein, K.; Burgermeister, E.; Ebert, M. P.; Boutros, M.

10.1101/660993 — genomics — Posted on 2019-06-07

2478 Fine-mapping complex inversion breakpoints and investigating somatic pairing in the Anopheles gambiae species complex using proximity-ligation sequencing

Corbett-Detig, R. B.; Said, I.; Calzetta, M.; Genetti, M.; Mcbroome, J.; Maurer, N. W.; Petrarca, V.; della Torre, A.; Besansky, N. J.

10.1101/662114 — evolutionary biology — Posted on 2019-06-07

2479 Risk of soil-transmitted helminthiasis among agrarian communities of Kogi State, Nigeria: Evaluated in the context of The Soil-Transmitted Helminthiasis Advisory Committee recommendation 2016

Anunobi, J. T.; Okoye, I. C.; Aguzie, I. O.; Ndukwe, Y. E.; Okpasuo, O. J.

10.1101/663237 — epidemiology — Posted on 2019-06-07

2480 Integrating population genetics to define conservation units from the core to the edge of Rhinolophus ferrumequinum western range

Tournayre, O.; Pons, j.-b.; Leuchtmann, M.; Leblois, R.; Piry, S.; FILIPPI-CODACCIONI, O.; Loiseau, A.; duhayer, j.; garin, i.; Mathews, F.; puechmaille, s.; Charbonnel, N.; pontier, d.

10.1101/662643 — evolutionary biology — Posted on 2019-06-07

2481 The murine transcriptome reveals global aging nodes with organ-specific phase and amplitude

Schaum, N.; Lehallier, B.; Hahn, O.; Hosseinzadeh, S.; Lee, S. E.; Sit, R.; Lee, D. P.; Losada, P. M.; Zardeneta, M. E.; Palovics, R.; Fehlmann, T.; Webber, J.; McGeever, A.; Zhang, H.; Berdnik, D.; Tan, W.; Zee, A.; Tan, M.; The Tabula Muris Consortium, ; Pisco, A.; Karkanias, J.; Neff, N. F.; Keller, A.; Darmanis, S.; Quake, S. R.; Wyss-Coray, T.

10.1101/662254 — genomics — Posted on 2019-06-07

2482 A rationally designed and highly versatile epitope tag for nanobody-based purification, detection and manipulation of proteins

Goetzke, H.; Kilisch, M.; Martinez-Carranza, M.; Sograte-Idrissi, S.; Rajavel, A.; Schlichthaerle, T.; Engels, N.; Jungmann, R.; Stenmark, P.; Opazo, F.; Frey, S.

10.1101/640771 — biochemistry — Posted on 2019-06-07

2483 A delay in sampling information from temporally autocorrelated visual stimuli

Callahan-Flintoft, C.; Holcombe, A. O.; Wyble, B.

10.1101/656850 — neuroscience — Posted on 2019-06-07

2484 RapidAIM: A culture- and metaproteomics-based Rapid Assay of Individual Microbiome responses to drugs

Li, L.; Ning, Z.; Zhang, X.; Mayne, J.; Cheng, K.; Stintzi, A.; Figeys, D.

10.1101/543256 — microbiology — Posted on 2019-06-07

2485 Deficiency in the autophagy modulator Dram1 exacerbates pyroptotic cell death of Mycobacteria-infected macrophages

Zhang, R.; Varela, M.; Forn-Cuni, G.; Torraca, V.; van der Vaart, M.; Meijer, A.

10.1101/599266 — immunology — Posted on 2019-06-07

2486 The effects of the neonicotinoid imidacloprid on gene expression and DNA methylation in the buff-tailed bumblebee Bombus terrestris

Bebane, P. S. A.; Hunt, B. J.; Pegoraro, M.; Jones, A. R. C.; Marshall, H.; Rosato, E.; Mallon, E. B.

10.1101/590091 — ecology — Posted on 2019-06-07

2487 Metabolic Alterations in Human Peripheral Blood Mononuclear Cells Associate with Progression to Islet Autoimmunity and Type 1 Diabetes

Sen, P.; Dickens, A. M.; Lopez-Bascon, M. A.; Lindeman, T.; Kemppainen, E.; Lamichhane, S.; Ronkko, T.; Ilonen, J.; Veijola, R.; Hyoty, H.; Hyotylainen, T.; Knip, M.; Oresic, M.

10.1101/658500 — molecular biology — Posted on 2019-06-07

2488 Contingent Convergence: The ability to detect convergent genomic evolution is dependent on demographic similarity

Whiting, J. R.; Fraser, B. A.

10.1101/592105 — evolutionary biology — Posted on 2019-06-07

2489 LFMD: a new likelihood-based method to detect low-frequency mutations without molecular tags

Ye, R.; Ruan, J.; Zhuang, X.; Qi, Y.; An, Y.; Xu, J.; Mak, T.; Liu, X.; Yang, H.; Xu, X.; Baum, L.; Nie, C.; Sham, P. C.

10.1101/617381 — bioinformatics — Posted on 2019-06-07

2490 Quantitative modeling links in vivo microstructural and macrofunctional organization of human and macaque insular cortex, and predicts cognitive control abilities

Menon, V.; Gallardo, G.; Pinsk, M. A.; Nguyen, V.-D.; Li, J.-R.; Cai, W.; Wassermann, D.

10.1101/662601 — neuroscience — Posted on 2019-06-07

2491 Data-driven spatial filtering for improved measurement of cortical tracking of multiple representations of speech

Lesenfants, D.; Vanthornhout, J.; Verschueren, E.; Francart, T.

10.1101/551218 — neuroscience — Posted on 2019-06-07

2492 Universal continuous severity traits underlying hundreds of Parkinson’s disease clinical features

Sandor, C.; Millin, S.; Dahl, A.; Lawton, M.; Hubbard, L.; Bojovic, B.; Peyret-Guzzon, M.; Matten, H.; Blancher, C.; Williams, N.; Ben-Shlomo, Y.; Hu, M. T.; Grosset, D. G.; Marchini, J.; Webber, C.

10.1101/655217 — neuroscience — Posted on 2019-06-07

2493 The neuropeptide Galanin is required for homeostatic rebound sleep following increased neuronal activity

Reichert, S.; Pavon Arocas, O.; Rihel, J.

10.1101/479634 — neuroscience — Posted on 2019-06-07

2494 Single cell RNA-Seq analysis identifies molecular mechanisms controlling hypothalamic patterning and differentiation.

Kim, D. W.; Washington, P. W.; Wang, Z. Q.; Lin, S.; Sun, C.; Jiang, L.; Blackshaw, S.

10.1101/657148 — neuroscience — Posted on 2019-06-07

2495 Direct RNA nanopore sequencing of full-length coronavirus genomes provides novel insights into structural variants and enables modification analysis

Viehweger, A.; Krautwurst, S.; Lamkiewicz, K.; Madhugiri, R.; Ziebuhr, J.; Hölzer, M.; Marz, M.

10.1101/483693 — genomics — Posted on 2019-06-07

2496 In the chick embryo, estrogen can induce chromosomally male ZZ left gonad epithelial cells to form an ovarian cortex which supports oogenesis

Guioli, S.; Zhao, D.; Nandi, S.; Clinton, M.; Lovell-Badge, R.

10.1101/568691 — developmental biology — Posted on 2019-06-07

2497 FGTpartitioner: A rapid method for parsimonious delimitation of ancestry breakpoints in large genome-wide SNP datasets

Chafin, T. K.

10.1101/644088 — bioinformatics — Posted on 2019-06-07

2498 RedMed: Extending drug lexicons for social media applications

Lavertu, A.; Altman, R. B.

10.1101/663625 — bioinformatics — Posted on 2019-06-07

2499 Iron-deficiency and estrogen are associated with ischemic stroke by up-regulating transferrin to induce hypercoagulability

Tang, X.; Fang, M.; Cheng, R.; Zhang, Z.; Wang, Y.; Shen, C.; Han, Y.; Lu, Q.; Du, Y.; Liu, Y.; Sun, Z.; Zhu, L.; Mwangi, J.; Xue, M.; Long, C.; Lai, R.

10.1101/646109 — biochemistry — Posted on 2019-06-07

2500 A Pandas complex adapted for piRNA-guided transposon silencing

Zhao, K.; Cheng, S.; Miao, N.; Xu, P.; Lu, X.; Zhang, Y.; Wang, M.; Ouyang, X.; Yuan, X.; Liu, W.; Lu, X.; Zhou, P.; Gu, J.; Zhang, Y.; Qiu, D.; Jin, Z.; Su, C.; Chao, P.; Wang, J.-H.; Dong, M.-Q.; Wan, Y.; Ma, J.; Cheng, H.; Huang, Y.; Yu, Y.

10.1101/608273 — molecular biology — Posted on 2019-06-07

2501 Strain-level diversity impacts cheese rind microbiome assembly and function

Niccum, B. A.; Kastman, E. K.; Kfoury, N.; Robbat, A.; Wolfe, B. E.

10.1101/652768 — microbiology — Posted on 2019-06-07

2502 Tunability of DNA polymerase stability during eukaryotic DNA replication

Lewis, J. S.; Spenkelink, L. M.; Schauer, G. D.; Yurieva, O.; Mueller, S. H.; Natarajan, V.; Kaur, G.; Maher, C.; Kay, C.; O'Donnell, M. E.; van Oijen, A. M.

10.1101/602086 — biophysics — Posted on 2019-06-07

2503 Metabolic activity affects response of single cells to a nutrient switch in structured populations

Dal Co, A.; Ackermann, M.; van Vliet, S.

10.1101/580563 — systems biology — Posted on 2019-06-07

2504 Time Series Experimental Design Under One-Shot Sampling: The Importance of Condition Diversity

Kang, X.; Hajek, B.; Wu, F.; Hanzawa, Y.

10.1101/537548 — systems biology — Posted on 2019-06-07

2505 Single and population coding of taste in the gustatory cortex of awake mice

Levitan, D.; Lin, J.-Y.; Wachutka, J.; Mukherjee, N.; Nelson, S. B.; Katz, D. B.

10.1101/575522 — neuroscience — Posted on 2019-06-07

2506 Quantitative Models of Phage-Antibiotics Combination Therapy

Rodriguez-Gonzalez, R. A.; Leung, C. Y.; Chan, B. K.; Turner, P. E.; Weitz, J. S.

10.1101/633784 — microbiology — Posted on 2019-06-07

2507 Inflammasome-independent role for NLRP3 in controlling innate anti-helminth immunity and tissue repair in the lung

Chenery, A.; Alhallaf, R.; Agha, Z.; Ajendra, J.; Parkinson, J.; Cooper, M. M.; Chan, B. H.; Eichenberger, R. M.; Dent, L. A.; Robertson, A. A.; Kupz, A.; Brough, D.; Loukas, A.; Sutherland, T. E.; Allen, J. E.; Giacomin, P.

10.1101/606392 — immunology — Posted on 2019-06-07

2508 Chromatin modifiers alter recombination between divergent DNA sequences

Chakraborty, U.; Mackenroth, B.; Shalloway, D.; Alani, E. E.

10.1101/519397 — genetics — Posted on 2019-06-07

2509 Prescribing of different antibiotics, rates of sepsis-related mortality and bacteremia in the US and England, and the utility of antibiotic replacement vs. reduction in prescribing

Goldstein, E.

10.1101/527101 — epidemiology — Posted on 2019-06-07

2510 Gene Panel Sequencing in a Chinese High-risk Breast Cancer Cohort

Zhang, X.; Wang, X.; Song, B.; Shao, K.; Li, G.; Jian, W.; Lin, C.; Wang, M.; Ye, X.; Xie, J.; Xia, B.; Xu, S.; Cao, B.; Xiao, L.; Zhang, Z.; Liu, M.; Fang, E.; Jin, H.; Wei, X.; Dean, M.; Wang, J.; Yang, H.; Wang, X.; Zhu, S.; Hou, Y.; Pang, D.

10.1101/513317 — cancer biology — Posted on 2019-06-07

2511 Identifying Genomic Islands with Deep Neural Networks

Assaf, R.; Xia, F.; Stevens, R.

10.1101/525030 — bioinformatics — Posted on 2019-06-07

2512 Deciphering regulatory DNA sequences and noncoding genetic variants using neural network models of massively parallel reporter assays

Movva, R.; Greenside, P.; Marinov, G. K.; Nair, S.; Shrikumar, A.; Kundaje, A.

10.1101/393926 — genomics — Posted on 2019-06-07

2513 Hierarchical transcriptional control regulates Plasmodium falciparum sexual differentiation

van Biljon, R.; van Wyk, R.; Painter, H.; Orchard, L.; Reader, J.; Niemand, J.; Llinas, M.; Birkholtz, L.-M.

10.1101/633222 — biochemistry — Posted on 2019-06-07

2514 Antagonistic coevolution between multiple quantitative traits: matching dynamics can arise from difference interactions

Yamamichi, M.; Lyberger, K.; Patel, S.

10.1101/509885 — evolutionary biology — Posted on 2019-06-07

2515 31° South: Dietary niche of an arid-zone endemic passerine

Ribeiro, A. M.; Smit, B.; Gilbert, T.

10.1101/508465 — ecology — Posted on 2019-06-07

2516 Unraveling the response of a biomimetic actin cortex to electric pulses in vesicles

Perrier, D.; Vahid, A.; Kathavi, V.; Stam, L.; Rems, L.; Mulla, Y.; Muralidharan, A.; Koenderink, G.; Kreutzer, M.; Boukany, P.

10.1101/338566 — biophysics — Posted on 2019-06-07

2517 Genome Functional Annotation using Deep Convolutional Neural Networks

Khodabandelou, G.; Routhier, E.; Mozziconacci, J.

10.1101/330308 — bioinformatics — Posted on 2019-06-07

2518 Kappa Opioid Receptor and Dynorphin Signaling in the Central Amygdala Regulates Alcohol Intake

Bloodgood, D. W.; Pati, D. W.; Pina, M. M.; Neira, S.; Hardaway, J. A.; Desai, S.; Boyt, K. M.; Palmiter, R. D.; Kash, T. L.

10.1101/663666 — neuroscience — Posted on 2019-06-06

2519 Single-molecule optical mapping enables quantitative measurement of D4Z4 repeats in facioscapulohumeral muscular dystrophy (FSHD)

Dai, Y.; Li, P.; Wang, Z.; Liang, F.; Yang, F.; Fang, L.; Huang, Y.; Huang, S.; Zhou, J.; Wang, D.; Cui, L.; Wang, K.

10.1101/286104 — genomics — Posted on 2019-06-07

2520 Drosophila Trpm mediates calcium influx during egg activation

Hu, Q.; Wolfner, M. F.

10.1101/663682 — developmental biology — Posted on 2019-06-06

2521 Stochastic Yield Catastrophes and Robustness in Self-Assembly

Gartner, F. M.; Graf, I. R.; Wilke, P.; Geiger, P. M.; Frey, E.

10.1101/660340 — biophysics — Posted on 2019-06-06

2522 Machine-Learning Prediction of Comorbid Substance Use Disorders in ADHD Youth Using Swedish Registry Data

Faraone, S.; Zhang-James, Y.; Chen, Q.; Kuja-Halkola, R.; Lichtenstein, P.; Larsson, H.

10.1101/661983 — neuroscience — Posted on 2019-06-06

2523 ERO1α promotes hypoxic tumour progression and is associated with poor prognosis in pancreatic cancer

Gupta, N.; Park, J. E.; Tse, W.; Kim, L. J.; Kon, O. L.; McCarthy, N. E.; Sze, S. K.

10.1101/662411 — cancer biology — Posted on 2019-06-06

2524 Identifying and removing widespread signal deflections from fMRI data: Rethinking the global signal regression problem.

Aquino, K. M.; Fulcher, B. D.; Parkes, L.; Sabaroedin, K. M.; Fornito, A.

10.1101/662726 — neuroscience — Posted on 2019-06-06

2525 Sensor localization using magnetic dipole-like coils: A method for highly accurate co-registration in on-scalp MEG

Pfeiffer, C.; Ruffieux, S.; Andersen, L. M.; Kalaboukhov, A.; Winkler, D.; Oostenveld, R.; Lundqvist, D.; Schneiderman, J. F.

10.1101/661678 — neuroscience — Posted on 2019-06-06

2526 Elucidating the molecular determinants of Aβ aggregation with deep mutational scanning

Gray, V. E.; Sitko, K.; Kameni, F. Z. N.; Williamson, M.; Stephany, J. J.; Hasle, N.; Fowler, D. E.

10.1101/662213 — molecular biology — Posted on 2019-06-06

2527 Cold storage reveals distinct metabolic perturbations in processing and non-processing cultivars of potato

Datir, S. S.; Yousuf, S.; Sharma, S.; Kochle, M.; Ravikumar, A.; Chugh, J.

10.1101/661611 — plant biology — Posted on 2019-06-06

2528 Resting-state \"Physiological Networks\"

Chen, J.; Lewis, L.; Chang, C.; Fultz, N.; Ohringer, N.; Rosen, B.; Polimeni, J.

10.1101/660787 — physiology — Posted on 2019-06-06

2529 Slow changes in seizure pathways in individual patients with focal epilepsy

Schroeder, G. M.; Diehl, B.; Chowdhury, F. A.; Duncan, J. S.; de Tisi, J.; Trevelyan, A. J.; Forsyth, R.; Jackson, A.; Taylor, P. N.; Wang, Y.

10.1101/661371 — neuroscience — Posted on 2019-06-06

2530 The bounded rationality of probability distortion: the bounded log-odds model

Zhang, H.; Ren, X.; Maloney, L. T.

10.1101/662429 — neuroscience — Posted on 2019-06-06

2531 Bacterial survival in microscopic droplets

Grinberg, M.; Orevi, T.; Steinberg, S.; Kashtan, N.

10.1101/662437 — microbiology — Posted on 2019-06-06

2532 Improvement of baculovirus as protein expression vector and as biopesticide by CRISPR/Cas9 editing

Pazmino-Ibarra, V.; Mengual, A.; Targovnik, A.; Herrero, S.

10.1101/662890 — microbiology — Posted on 2019-06-06

2533 NETosis proceeds by cytoskeleton and endomembrane disassembly and PAD4-mediated chromatin de-condensation and nuclear envelope rupture

Waterman, C. M.; Thiam, H. R.; Wong, S. L.; Qiu, R.; Kittisopikul, M.; Vahabikashi, A. V.; Goldman, A. E.; Goldman, R. D. V.; Wagner, D. D.

10.1101/663427 — immunology — Posted on 2019-06-06

2534 Paired-end Mappability of Transposable Elements in the Human Genome

Sexton, C. E.; Han, M.

10.1101/663435 — genomics — Posted on 2019-06-06

2535 Real-time monitoring of mechanical cues in the regenerative niche reveal dynamic strain magnitudes that enhance bone repair

Klosterhoff, B. S.; Kaiser, J.; Nelson, B.; Karipott, S. S.; Ruehle, M. A.; Hollister, S. J.; Weiss, J.; Ong, K. G.; Willett, N.; Guldberg, R. E.

10.1101/663278 — bioengineering — Posted on 2019-06-06

2536 Effectiveness of treatments for firework fears in dogs

Riemer, S.

10.1101/663294 — animal behavior and cognition — Posted on 2019-06-06

2537 Integration of vestibular and hindlimb inputs by vestibular nucleus neurons: Multisensory influences on postural control.

Miller, D. M.; Balaban, C. D.; McCall, A. A.

10.1101/661736 — neuroscience — Posted on 2019-06-06

2538 Hippocampal subfields and limbic white matter jointly predict learning rate in older adults

Bender, A. R.; Brandmaier, A. M.; Düzel, S.; Keresztes, A.; Pasternak, O.; Lindenberger, U.; Kühn, S.

10.1101/661702 — neuroscience — Posted on 2019-06-06

2539 Fine scale population structure linked to neutral divergence in the common sole (Solea solea), a marine fish with high dispersal capacity

Le Moan, A.; Jimenez-Mena, B.; Bekkevold, D.; Hemmer-Hansen, J.

10.1101/662619 — evolutionary biology — Posted on 2019-06-06

2540 Antigen-Specific Immune Decoys Intercept and Exhaust Autoimmunity to Prevent Disease

Griffin, J. D.; Song, J. Y.; Huang, A.; Sedlacek, A. R.; Flannagan, K. L.; Berkland, C. J.

10.1101/662973 — bioengineering — Posted on 2019-06-06

2541 Cellular and widefield imaging of sound frequency organization in primary and higher-order fields of the mouse auditory cortex

Romero, S.; Hight, A. E.; Clayton, K. K.; Resnik, J.; Williamson, R. S.; Hancock, K. E.; Polley, D. B.

10.1101/663021 — neuroscience — Posted on 2019-06-06

2542 Multi-omic analyses reveal antibody-dependent natural killer cell-mediated cytotoxicity in autoimmune thyroid diseases

Martin, T. C.; Illieva, K. M.; Visconti, A.; Beaumont, M.; Kiddle, S. J.; Dobson, R. J. B.; Mangino, M. J.; Lim, E. M.; Pezer, M.; Steves, C. J.; Bell, J. T.; Wilson, S. G.; Lauc, G.; Roederer, M.; Walsh, J. P.; Spector, T. D.; Karagiannis, S. N.

10.1101/662957 — immunology — Posted on 2019-06-06

2543 Germline maintenance through the multifaceted activities of GLH/Vasa in Caenorhabditis elegans P granules

Marnik, E. A.; Fuqua, J. H.; Sharp, C. S.; Rochester, J. D.; Xu, E. L.; Holbrook, S. E.; Updike, D. L.

10.1101/663641 — developmental biology — Posted on 2019-06-06

2544 Purinergic signaling is enhanced in the absence of UT-A1 and UT-A3

Himmel, N. J.; Rogers, R. T.; Redd, S. K.; Wang, Y.; Blount, M. A.

10.1101/663252 — physiology — Posted on 2019-06-06

2545 Automated Clear Cell Renal Carcinoma Grade Classification with Prognostic Significance

Tian, K.; Rubadue, C. A.; Lin, D. I.; Veta, M.; Pyle, M. E.; Irshad, H.; Heng, Y. J.

10.1101/661520 — pathology — Posted on 2019-06-06

2546 Balancing Model-Based and Memory-Free Action Selection under Competitive Pressure

Mayr, U.; Kikumoto, A.

10.1101/662700 — neuroscience — Posted on 2019-06-06

2547 Quantitative modeling links in vivo microstructural and macrofunctional organization of human and macaque insular cortex, and predicts cognitive control abilities

Menon, V.; Gallardo, G.; Pinsk, M. A.; Nguyen, V.-D.; Li, J.-R.; Cai, W.; Wassermann, D.

10.1101/662601 — neuroscience — Posted on 2019-06-06

2548 Serial position effects reflect the integrity of distinct brain regions in Major and Minor Neurocognitive Disorder

Foldi, N. S.; Taylor, K. I.; Monsch, A. U.; Sollberger, M.; Kivisaari, S. L.

10.1101/662742 — neuroscience — Posted on 2019-06-06

2549 Adaptation of Mycobacterium tuberculosis to biofilm growth is genetically linked to drug tolerance

Richards, J. P.; Cai, W.; Zill, N. A.; Zhang, W.; Ojha, A. K.

10.1101/663369 — microbiology — Posted on 2019-06-06

2550 Genome improvement and genetic map construction for Aethionema arabicum, the first divergent branch in the Brassicaceae family

Schranz, M. E.; Nguyen, T.-P.; Muehlich, C.; Mohammadin, S.; van den Bergh, E.; Plaats, A.; Haas, F.; Rensing, S.

10.1101/662684 — genomics — Posted on 2019-06-06

2551 The role of multilevel selection in host microbiome evolution

van Vliet, S.; Doebeli, M.

10.1101/663351 — evolutionary biology — Posted on 2019-06-06

2552 The effect of insect cyanoglucosides on predation by domestic chicks

Cardoso, M. Z.

10.1101/662288 — ecology — Posted on 2019-06-06

2553 Predicting transfer RNA gene activity from genome variation data

Thornlow, B.; Armstrong, J.; Holmes, A.; Corbett-Detig, R.; Lowe, T. M.

10.1101/661942 — bioinformatics — Posted on 2019-06-06

2554 Fentanyl depression of respiration: comparison with heroin and morphine

Hill, R.; Santhakumar, R.; Dewey, W. L.; Kelly, E.; Henderson, G.

10.1101/662627 — pharmacology and toxicology — Posted on 2019-06-06

2555 The cholinergic basal forebrain links sensory stimuli with delayed reinforcement to support learning

Guo, W.; Robert, B.; Polley, D. B.

10.1101/663211 — neuroscience — Posted on 2019-06-06

2556 CX3CL1 binding protein-2 (CBP2) of Plasmodium falciparum binds nucleic acids

SAXENA, R.; Kaur, J.; Hora, R.; Singh, P.; Singh, V.; Mishra, P. C.

10.1101/662494 — molecular biology — Posted on 2019-06-06

2557 Deformed wing virus type A, a major honey bee pathogen, is vectored by the mite Varroa destructor in a non-propagative manner.

Posada-Florez, F.; Childers, A. K.; Heerman, M. C.; Egekwu, N. I.; Cook, S. C.; Chen, Y. P.; Evans, J. D.; Ryabov, E. V.

10.1101/660985 — microbiology — Posted on 2019-06-06

2558 A hidden gene in astroviruses encodes a cell-permeabilizing protein involved in virus release

Lulla, V.; Firth, A. E.

10.1101/661579 — microbiology — Posted on 2019-06-06

2559 Coordination difficulties, IQ and psychopathology in children with high-risk Copy Number Variants

Cunningham, A. C.; Owen, M.; Hall, J.; van den Bree, M. B.

10.1101/662833 — genetics — Posted on 2019-06-06

2560 Predator-induced selection on urchin activity level depends on urchin body size

Preorius, J. D.; Lichtenstein, J. L. L.; Eliason, E. J.; Stier, A. C.; Pruitt, J. N.

10.1101/655977 — ecology — Posted on 2019-06-06

2561 EXOSC10 mediated RNA degradation sculpts the transcriptome during oocyte growth-to-maturation transition

Wu, D.; Palmer, C.; Dean, J.

10.1101/663377 — developmental biology — Posted on 2019-06-06

2562 Probing apoptosis signaling proteins in single living cells for precision efficacy evaluation of anti-cancer drugs

Wen, Y.; Liu, J.; He, H.; Liu, Z.

10.1101/663013 — cancer biology — Posted on 2019-06-06

2563 Fine-grained simulations of the microenvironment of vascularized tumours

Fredrich, T.; Rieger, H.; Chignola, R.; Milotti, E.

10.1101/661603 — biophysics — Posted on 2019-06-06

2564 Availability of Insects as Feed for Meadow Bird Chicks Assessed Across Years by Batched Image Analysis of Sticky Traps

Kaffa, C.; Vos, R. A.

10.1101/663591 — bioinformatics — Posted on 2019-06-06

2565 Alvis: a tool for contig and read ALignment VISualisation and chimera detection

Martin, S.; Leggett, R. M.

10.1101/663401 — bioinformatics — Posted on 2019-06-06

2566 Efficient small-scale conjugation of DNA to primary antibodies for multiplexed cellular targeting

Cremers, G.; Rosier, B.; Riera Brillas, R.; Albertazzi, L.; de Greef, T.

10.1101/662791 — biochemistry — Posted on 2019-06-06

2567 Lactation curve model with explicit representation of perturbations as a phenotyping tool for dairy livestock precision farming.

Ben Abdelkrim, A.; Puillet, L.; Gomes, P.; Martin, O.

10.1101/661249 — zoology — Posted on 2019-06-06

2568 Automated Microfossil Identification and Segmentation Using a Deep Learning Approach

Ramos de Carvalho, L. E.; Fauth, G.; Baecker Fauth, S.; Krahl, G.; Camargo Moreira, A.; Peres Fernandes, C.; von Wangenheim, A.

10.1101/661694 — paleontology — Posted on 2019-06-06

2569 Estimating numerosity of visual concepts with a single spiking neuron.

Rapp, H.; Nawrot, M. P.; Stern, M.

10.1101/662932 — neuroscience — Posted on 2019-06-06

2570 Decoding the neuronal correlates of motion-in-depth from EEG

Himmelberg, M. M.; Segala, F. G.; Wade, A. R.

10.1101/661991 — neuroscience — Posted on 2019-06-06

2571 All-or-none visual categorization in the human brain

Retter, T. L.; Jiang, F.; Webster, M. A.; Rossion, B.

10.1101/658625 — neuroscience — Posted on 2019-06-06

2572 Spontaneous eye blink rate predicts individual differences in exploration and exploitation during reinforcement learning

Van Slooten, J. C.; Jahfari, S.; Theeuwes, J.

10.1101/661553 — neuroscience — Posted on 2019-06-06

2573 Localizing the multiple-demand frontoparietal network in individual subjects

Shashidhara, S.; Spronkers, F. S.; Erez, Y.

10.1101/661934 — neuroscience — Posted on 2019-06-06

2574 Predicting the Evolution of White Matter Hyperintensities in Brain MRI using Generative Adversarial Networks and Irregularity Map

Rachmadi, M. F.; Vades Hernandez, M. d. C.; Makin, S.; Wardlaw, J. M.; Komura, T.

10.1101/662692 — neuroscience — Posted on 2019-06-06

2575 Specialized NADPH diaphorase membrane-related localizations in the brainstem of the pigeons (Columba livia)

Jia, Y.; Hou, W.; Li, Y.; Zhang, T.; Wang, X.; Wen, X.; Xu, X.; Sun, H.; Rao, C.; Wu, X.; Wei, Z.; Zhai, Z.; Tan, H.

10.1101/663310 — neuroscience — Posted on 2019-06-06

2576 Mice with GNAO1 R209H Movement Disorder Variant Display Hyperlocomotion Alleviated by Risperidone

Larrivee, C. L.; Feng, H.; Leipprandt, J. R.; Demireva, E. Y.; Xie, H.; Neubig, R. R.

10.1101/662031 — neuroscience — Posted on 2019-06-06

2577 Molecular characterization of the stress network in the human brain

Meijer, M.; Keo, A.; van Leeuwen, J. M. C.; Dzyubachyk, O.; Meijer, O. C.; Vinkers, C. H.; Mahfouz, A.

10.1101/661587 — neuroscience — Posted on 2019-06-06

2578 ppGpp Ribosome Dimerization Model for Bacterial Persister Formation and Resuscitation

Song, S.; Wood, T. K.

10.1101/663658 — microbiology — Posted on 2019-06-06

2579 An emergent flow of the nuclear array in syncytial embryos

Lv, Z.; Rosenbaum, J.; Mohr, S.; Zhang, X.; Preiss, H.; Kruss, S.; Alim, K.; Aspelmeier, T.; Grosshans, J.

10.1101/662965 — developmental biology — Posted on 2019-06-06

2580 Uveal Melanoma Oncogene CYSLTR2 Encodes a Constitutively Active GPCR Highly Biased Toward Gq Signaling

Ceraudo, E.; Horioka, M.; Mattheisen, J. M.; Hitchman, T. D.; Moore, A. R.; Kazmi, M. A.; Chi, P.; Chen, Y.; Sakmar, T. P.; Huber, T.

10.1101/663153 — cancer biology — Posted on 2019-06-06

2581 RNA velocity and protein acceleration from single-cell multiomics experiments

Gorin, G.; Svensson, V.; Pachter, L.

10.1101/658401 — bioinformatics — Posted on 2019-06-06

2582 RMetD2: a tool for integration of relative transcriptomics data into Genome-scale metabolic models

Zhang, C.; Lee, S.; Bidkhori, G.; Benfe, R.; Lovric, A.; Chen, S.; Uhlen, M.; Nielsen, J.; Mardinoglu, A.

10.1101/663096 — bioinformatics — Posted on 2019-06-06

2583 Panel Sequencing in Uterine Leiomyomas identifies Missense Mutations associated with immunohistochemical Fumarate Hydratase (FH)-Loss

Popp, B.; Erber, R.; Kraus, C.; Vasileiou, G.; Hoyer, J.; Burghaus, S.; Hartmann, A.; Beckmann, M. W.; Reis, A.; Agaimy, A.

10.1101/663609 — pathology — Posted on 2019-06-06

2584 Introducing Rhythmic Sinusoidal Amplitude-Modulated Auditory Stimuli with Multiple Message Frequency Coding for Fatigue Reduction in Normal Subjects: An EEG Study

Shamsi, E.; Keihani, A.; Shirzhiyan, Z.; Farahi, M.; Mahnam, A.; Heydari, M. R.; Jafari, A. H.

10.1101/663344 — neuroscience — Posted on 2019-06-06

2585 Systematic Integration of Structural and Functional Data into Multi-Scale Models of Mouse Primary Visual Cortex

Billeh, Y. N.; Cai, B.; Gratiy, S. L.; Dai, K.; Iyer, R.; Gouwens, N. W.; Abbasi-Asl, R.; Jia, X.; Siegle, J. H.; Olsen, S. R.; Koch, C.; Mihalas, S.; Arkhipov, A.

10.1101/662189 — neuroscience — Posted on 2019-06-06

2586 A novel mode of communication between blood and the germline for the inheritance of paternal experiences

van Steenwyk, G.; Gapp, K.; Jawaid, A.; Germain, P.-L.; Manuella, F.; Tanwar, D. K.; Zamboni, N.; Gaur, N.; Efimova, A.; Thumfart, K.; Miska, E. A.; Mansuy, I. M.

10.1101/653865 — molecular biology — Posted on 2019-06-06

2587 Population Genomics of Nontuberculous Mycobacteria Recovered from United States Cystic Fibrosis Patients

Hasan, N. A.; Davidson, R. M.; Epperson, L. E.; Kammlade, S. M.; Rodger, R. R.; Levin, A. R.; Sherwood, A.; Martiniano, S. L.; Daley, C. L.; Salfinger, M.; Nick, J. A.; Strong, M.; Sagel, S.

10.1101/663559 — microbiology — Posted on 2019-06-06

2588 Homogenization of Rhizosphere Bacterial Communities by Pea (Pisum sativum L.) Cultivated under Different Conservation Agricultural Practices in the Eastern Himalayas

Chaudhari, D.; Rangappa, K.; Das, A.; Layek, J.; Basavaraju, S.; Shouche, Y. S.; Rahi, P.

10.1101/662775 — microbiology — Posted on 2019-06-06

2589 Interferons drive development of novel interleukin-15-responsive macrophages in the uterus

Gordon, S. M.; Nishiguchi, M. A.; Mani, S.; Mainigi, M. A.; Behrens, E. M.

10.1101/663476 — immunology — Posted on 2019-06-06

2590 Does evolution design robust food webs?

Girardot, B.; Gauduchon, M.; Menard, F.; Poggiale, J.-C.

10.1101/663203 — ecology — Posted on 2019-06-06

2591 TEAD4/YAP1/WWTR1 prevent the premature onset of pluripotency prior to the 16-cell stage

Ralston, A.; Frum, T.; Watts, J. L.

10.1101/663005 — developmental biology — Posted on 2019-06-06

2592 Estimation of immune cell content in tumor using single-cell RNA-seq reference data

Yu, X.; Chen, A.; Conejo-Garcia, J.; Chung, C. H.; Wang, X.

10.1101/663500 — cancer biology — Posted on 2019-06-06

2593 A murine aging cell atlas reveals cell identity and tissue-specific trajectories of aging

Kimmel, J. C.; Penland, L.; Rubinstein, N. D.; Hendrickson, D. G.; Kelley, D. R.; Rosenthal, A. Z.

10.1101/657726 — bioinformatics — Posted on 2019-06-06

2594 hypeR: An R Package for Geneset Enrichment Workflows

Federico, A.; Monti, S.

10.1101/656637 — bioinformatics — Posted on 2019-06-06

2595 Machine learning reveals bilateral distribution of somatic L1 insertions in human neurons and glia

10.1101/660779 — bioinformatics — Posted on 2019-06-06

2596 Resistance to change? The impact of group medication on AMR gene dynamics during commercial pig production

Pollock, J.; Muwonge, A.; Hutchings, M. R.; Mainda, G.; Bronsvoort, B. M.; Duggan, L. C.; Gally, D. L.; Corbishley, A.

10.1101/659771 — microbiology — Posted on 2019-06-06

2597 RHOA mediated mechanical force generation through Dectin-1

Choraghe, R. P.; Kołodziej, T.; Buser, A.; Rajfur, Z.; Neumann, A. K.

10.1101/663526 — immunology — Posted on 2019-06-06

2598 Adaptive and maladaptive genetic diversity in small populations; insights from the Brook Charr (Salvelinus fontinalis) case study

Ferchaud, A.-L.; Leitwein, M.; Laporte, M.; Boivin-Delisle, D.; Bougas, B.; Hernandez, C.; Normandeau, E.; Thibault, I.; Bernatchez, L.

10.1101/660621 — evolutionary biology — Posted on 2019-06-06

2599 RedMed: Extending drug lexicons for social media applications

Lavertu, A.; Altman, R. B.

10.1101/663625 — bioinformatics — Posted on 2019-06-06

2600 Environmental harshness is associated with lower investment in collective actions

Lettinga, N.; Jacquet, P. O.; Andre, J.-B.; Baumard, N.; Chevallier, C.

10.1101/663518 — animal behavior and cognition — Posted on 2019-06-06

2601 Essential roles of Hdac1 and 2 in lineage development and genome-wide DNA methylation during mouse preimplantation development

Zhao, P.; Wang, H.; Wang, H.; Dang, Y.; Luo, L.; Li, S.; Shi, Y.; Wang, L.; Wang, S.; Mager, J.; Zhang, K.

10.1101/662767 — developmental biology — Posted on 2019-06-06

2602 Light-regulated collective contractility in a multicellular choanoflagellate

Brunet, T.; Larson, B.; Linden, T.; Vermeij, M.; McDonald, K. L.; King, N.

10.1101/661009 — cell biology — Posted on 2019-06-06

2603 Kindlin Assists Talin to Promote Integrin Activation

Haydari, Z.; Shams, H.; Jahed, Z.; Mofrad, M. R. K.

10.1101/662163 — biophysics — Posted on 2019-06-06

2604 Biomarker discovery in inflammatory bowel diseases using network-based feature selection

Abbas, M.; Matta, J.; Le, T.; Bensmail, H.; Obafemi-Ajayi, T.; Honavar, V.; EL-Manzalawy, Y.

10.1101/662197 — bioinformatics — Posted on 2019-06-06

2605 Massively parallel single-cell B-cell receptor sequencing enables rapid discovery of diverse antigen-reactive antibodies

Goldstein, L.; Chen, Y.-J. J.; Wu, J.; Chaudhuri, S.; Hsiao, Y.-C.; Schneider, K.; Hoi, K. H.; Lin, Z.; Guerrero, S.; Jaiswal, B. S.; Jeremy, S.; Antony, A.; Pahuja, k. B.; Seshasayee, D.; Modrusan, Z.; Hotzel, I.; Seshagiri, S.

10.1101/660472 — immunology — Posted on 2019-06-06

2606 Ginsenoside Rg1 defenses PC-12 cells against hydrogen peroxide-caused damage via up-regulation of miR-216a-5p

Yi, G.; Liu, L.; Lv, C.; Wei, Y.; Yan, T.

10.1101/662817 — biochemistry — Posted on 2019-06-06

2607 Intertwined signatures of desiccation and drought tolerance in grasses

Pardo, J.; Wai, C. M.; Chay, H.; Madden, C. F.; Hilhorst, H. W. M.; Farrant, J. M.; VanBuren, R.

10.1101/662379 — plant biology — Posted on 2019-06-06

2608 Multiple memories can be simultaneously reactivated during sleep as effectively as a single memory

Schechtman-Drayman, E.; Antony, J.; Lampe, A.; Wilson, B. J.; Wilson, B. J.; Norman, K. A.

10.1101/662015 — neuroscience — Posted on 2019-06-06

2609 Widespread immunogenic poly-epitope frameshift mutations in microsatellite unstable tumors

Roudko, V.; Cimen Bozkus, C.; Orfanelli, T.; Blank, S. V.; Greenbaum, B.; Bhardwaj, N.

10.1101/662262 — cancer biology — Posted on 2019-06-06

2610 A Bayesian Framework for Detecting Gene Expression Outliers in Individual Samples

Vivian, J.; Eizenga, J.; Beale, H. C.; Vaske, O. M.; Paten, B.

10.1101/662338 — bioinformatics — Posted on 2019-06-06

2611 Analyzing effect of altitudinal variation in Enzymatic antioxidants of Coleus forskohlii from Uttarakhand, India

rana, p. s.; Saklani, P.

10.1101/662528 — plant biology — Posted on 2019-06-06

2612 Comprehensive genomic analysis of dietary habits in UK Biobank identifies hundreds of genetic loci and establishes causal relationships between educational attainment and healthy eating

Cole, J. B.; Florez, J. C.; Hirschhorn, J. N.

10.1101/662239 — genomics — Posted on 2019-06-06

2613 Acid and Iron Experimental Evolution of Halobacterium sp. NRC-1

Kunka, K. S.; Griffith, J. M.; Holdener, C.; Bischof, K. M.; Li, H.; DasSarma, P.; DasSarma, S.; Slonczewski, J. L.

10.1101/662882 — genetics — Posted on 2019-06-06

2614 Evolution at two-time frames shape structural variants and population structure of European plaice (Pleuronectes platessa)

Le Moan, A.; Bekkevold, D.; Hemmer-Hansen, J.

10.1101/662577 — evolutionary biology — Posted on 2019-06-06

2615 FALCONET: an R package to accelerate automatic visualisation of genome scale metabolic models

Lu, H.; Zhu, Z.; Kerkhoven, E. J.; Nielsen, J.

10.1101/662056 — systems biology — Posted on 2019-06-06

2616 Electrophysiological correlates of syntactic structures

Artoni, F.; D'Oro, P.; Catricala', E.; Conca, F.; Bottoni, F.; Pelliccia, V.; Sartori, I.; Lo Russo, G.; Cappa, S.; Micera, S.; Moro, A.

10.1101/660415 — neuroscience — Posted on 2019-06-06

2617 Staufen blocks autophagy in neurodegeneration

Pulst, S. M.; Paul, S.; Dansithong, W.; Gandelman, M.; Zu, T.; Ranum, L. P. W.; Figueroa, K. P.; Scoles, D. R.

10.1101/659649 — neuroscience — Posted on 2019-06-06

2618 Sex-Biased Trajectories of Amygdalo-Hippocampal Morphology Change Over Human Development

Fish, A. M.; Nadig, A.; Seidlitz, J.; Reardon, P. K.; Mankiw, C.; McDermott, C. L.; Blumenthal, J. D.; Clasen, L. S.; Lalonde, F.; Lerch, J. P.; Chakravarty, M. M.; Shinohara, R. T.; Raznahan, A.

10.1101/661686 — neuroscience — Posted on 2019-06-06

2619 Relocation of macrophages maintains the barrier function of the urothelium and protects against persistent infection

Bottek, J.; Soun, C.; Volke, J. K.; Dixit, A.; Thiebes, S.; Beerlage, A.-L.; Horstmann, M.; Urbanek, A.; Uszkoreit, J.; Eisenacher, M.; Bracht, T.; Sitek, B.; Hoffmann, F.; Vijitha, N.; von Eggeling, F.; Engel, D. R.

10.1101/649137 — immunology — Posted on 2019-06-06

2620 Improving detection capabilities of a critically endangeredfreshwater invertebrate with environmental DNA using digital droplet PCR

Mauvisseau, Q.; Davy-Bowker, J.; Bulling, M.; Brys, R.; Neyrinck, S.; Troth, C.; Sweet, M.

10.1101/661447 — ecology — Posted on 2019-06-06

2621 Host engineering for improved valerolactam production in Pseudomonas putida

Thompson, M.; Valencia, L. E.; Blake-Hedges, J.; Cruz-Morales, P.; Velasquez, A.; Pearson, A.; Sermeno, L.; Sharpless, W.; Benites, V.; Chen, Y.; Baidoo, E.; Petzold, C. J.; Deutschbauer, A.; Keasling, J. D.

10.1101/660795 — synthetic biology — Posted on 2019-06-06

2622 Functional characterization of RNase H1 proteins in Arabidopsis thaliana

Kucinski, J.; Kmera, A.; Rowley, M. J.; Khurana, P.; Nowotny, M.; Wierzbicki, A. T.

10.1101/662080 — plant biology — Posted on 2019-06-06

2623 Discovering precise temporal patterns in large-scale neural recordings through robust and interpretable time warping

Williams, A. H.; Poole, B.; Maheswaranathan, N.; Dhawale, A. K.; Fisher, T.; Wilson, C. D.; Brann, D. H.; Trautmann, E.; Ryu, S.; Shusterman, R.; Rinberg, D.; Ölveczky, B. P.; Shenoy, K. V.; Ganguli, S.

10.1101/661165 — neuroscience — Posted on 2019-06-06

2624 CA-170 a potent small-molecule PD-L1 inhibitor or not?

Musielak, B.; Kocik, J.; Skalniak, L.; Magiera-Mularz, K.; Sala, D.; Czub, M.; Holak, T. A.; Plewka, J.

10.1101/662668 — cancer biology — Posted on 2019-06-06

2625 New mechanism-based inhibitors of aspartate transcarbamoylase for anticancer drug development

Lei, Z.; Wang, N.; Wang, B.; Lu, Z.; Tan, H.; Zheng, J.; Jia, Z.

10.1101/662718 — cancer biology — Posted on 2019-06-06

2626 proDA: Probabilistic Dropout Analysis for Identifying Differentially Abundant Proteins in Label-Free Mass Spectrometry

Ahlmann-Eltze, C.; Anders, S.

10.1101/661496 — bioinformatics — Posted on 2019-06-06

2627 Evaluation of network architecture and data augmentation methods for deep learning in chemogenomics

Playe, B.; Stoven, V.

10.1101/662098 — bioinformatics — Posted on 2019-06-06

2628 Functional and comparative genomic analysis of integrated prophage-like sequences in Candidatus Liberibacter asiaticus

Dominguez-Mirazo, M.; Jin, R.; Weitz, J. S.

10.1101/661967 — bioinformatics — Posted on 2019-06-06

2629 The influence of thermal extremes on coral reef fish behaviour in the Persian Gulf

D'Agostino, D.; Burt, J. A.; Reader, T.; Vaughan, G.; Chapman, B.; Santinelli, V.; Cavalcante, G.; Feary, D. A.

10.1101/654624 — animal behavior and cognition — Posted on 2019-06-06

2630 Dissociating decisional and temporal information in interval categorisation

Morita, V. C.; Sato, J. R.; Caetano, M. S.; Cravo, A. M.

10.1101/659375 — neuroscience — Posted on 2019-06-06

2631 The Role of Parvalbumin-positive Interneurons in Auditory Steady-State Response Deficits in Schizophrenia

Metzner, C.; Zurowski, B.; Steuber, V.

10.1101/662510 — neuroscience — Posted on 2019-06-06

2632 Characterization of Mucosal Dysbiosis of Early Colonic Neoplasia

Hong, B.-y.; Ideta, T.; Igarashi, Y.; Tan, Y.; DiSiena, M.; Mo, A.; Birk, J. W.; Forouhar, F.; Devers, T. J.; Weinstock, G. M.; Rosenberg, D. W.

10.1101/662221 — microbiology — Posted on 2019-06-06

2633 Transcriptome dynamics predict thermotolerance in Caenorhabditis elegans

Jovic, K.; Grilli, J. L.; Sterken, M. L.; Riksen, J. A.; Snoek, B. L.; Allesina, S.; Kammenga, J.

10.1101/661652 — genomics — Posted on 2019-06-06

2634 Beyond parallel evolution: when several species colonize the same environmental gradient

Le Moan, A.; Gaggiotti, O.; Henriques, R.; Martinez, P.; Bekkevold, D.; Hemmer-Hansen, J.

10.1101/662569 — evolutionary biology — Posted on 2019-06-06

2635 Effect of accelerated ageing on seed membrane integrity and chemical composition of Tetrapleura tetraptera (schum. & thonn.)

Sossou, H. S.; Asomaning, J. M.; Gaveh, E.; SODEDJI, F. A. K.; Agoyi, E. E.; Sarkodie-Addo, J.; Assogbadjo, A. E.

10.1101/662122 — physiology — Posted on 2019-06-06

2636 Myelin development in visual scene-network tracts beyond late childhood: A multimethod neuroimaging study

Meissner, T. W.; Genc, E.; Mädler, B.; Weigelt, S.

10.1101/662809 — neuroscience — Posted on 2019-06-06

2637 MinION Sequencing of colorectal cancer tumour microbiomes - a comparison with amplicon-based and RNA-Sequencing

Taylor, W.; Pearson, J.; Miller, A.; Schmeier, S.; Frizelle, F.; Purcell, R. V.

10.1101/662270 — microbiology — Posted on 2019-06-06

2638 Inactivation of genes in oxidative respiration and iron acquisition pathways in pediatric clinical isolates of small-colony variant Enterobactericeae

Greninger, A. L.; Addetia, A.; Tao, Y.; Adler, A.; Qin, X.

10.1101/662486 — microbiology — Posted on 2019-06-06

2639 Using structural analysis to assess the impact of missense variants in MEN1

Caswell, R. C.; Owens, M. M.; Gunning, A. C.; Ellard, S.; Wright, C. F.

10.1101/661512 — genetics — Posted on 2019-06-06

2640 BAGSE: a Bayesian hierarchical model approach for gene set enrichment analysis

Hukku, A.; Quick, C.; Luca, F.; Pique-Regi, R.; Wen, X.

10.1101/662171 — bioinformatics — Posted on 2019-06-06

2641 tRNAnalysis: A flexible pre-processing and next-generation sequencing data analysis pipeline for transfer RNA

James-Bott, A.; Cribbs, A. P.

10.1101/655829 — bioinformatics — Posted on 2019-06-06

2642 Protein Acetylation Induced by Dichloroacetate (DCA) Treatment is Associated with Decreased Respiration in Cultured Hepatocytes: Preliminary Results

Meyer, J. G.

10.1101/662841 — biochemistry — Posted on 2019-06-06

2643 Convergent Hybrid Phase Ligation Strategy for Efficient Total Synthesis of Large Proteins Demonstrated for 212-residue Linker Histone H1.2

Hong, Z. Z.; Yu, R. R.; Zhang, X.; Webb, A. M.; Burge, N. L.; Poirier, M. G.; Ottesen, J. J.

10.1101/661744 — biochemistry — Posted on 2019-06-06

2644 A Computational Model of the Underlying Mechanisms of Temporal Coding in the Auditory Cortex

Lee, J. H.; Wang, X.; Bendor, D.

10.1101/661751 — neuroscience — Posted on 2019-06-06

2645 Aimed limb movements in a hemimetabolous insect are intrinsically compensated for allometric wing growth by developmental mechanisms

Patel, A. J.; Matheson, T.

10.1101/662759 — neuroscience — Posted on 2019-06-06

2646 Transposons played a major role in the diversification between the closely related almond (Prunus dulcis) and peach (P. persica) genomes: Results from the almond genome sequence

Alioto, T.; Alexiou, K.; Bardil, A. M.; Barteri, F.; Castanera, R.; Cruz, F.; Dhingra, A.; Duval, H.; Fernandez i Marti, A.; Frias, L.; Galan, B.; Garcia, J. L.; Howad, W.; Gomez Garrido, J.; Gut, M.; Julca, I.; Morata, J.; Puigdomenech, P.; Ribeca, P.; Rubio-Cabetas, M. J.; Vlasova, A.; Wirthensohn, M.; Garcia-Mas, J.; Gabaldon, T.; Casacuberta, J. M.; Arus, P.

10.1101/662676 — genomics — Posted on 2019-06-06

2647 Linear modeling reveals a predominance of cis- over trans- regulatory effects in wild and domesticated barley

Haas, M. W.; Himmelbach, A.; Mascher, M.

10.1101/661926 — genetics — Posted on 2019-06-06

2648 Inferring the landscape of recombination using recurrent neural networks

Adrion, J. R.; Galloway, J. G.; Kern, A. D.

10.1101/662247 — evolutionary biology — Posted on 2019-06-06

2649 The conspicuousness of the toxic Heliconius butterflies across time and habitat

Dalbosco Dell'Aglio, D.; Troscianko, J.; Stevens, M.; McMillan, W. O.; Jiggins, C. D.

10.1101/662155 — ecology — Posted on 2019-06-06

2650 Canonical Wnt pathway controls mESCs self-renewal through inhibition of spontaneous differentiation via β-catenin/TCF/LEF functions

Aulicino, F.; Sottile, F.; Pedone, E.; Marucci, L.; Cosma, M. P.

10.1101/661777 — cell biology — Posted on 2019-06-06

2651 Single-Cell Signalling Analysis of Heterocellular Organoids

Qin, X.; Sufi, J.; Vlckova, P.; Kyriakidou, P.; Acton, S. E.; Li, V. S. W.; Nitz, M.; Tape, C. J.

10.1101/659896 — cell biology — Posted on 2019-06-06

2652 EpCAM Aptamer siRNA chimeras: Therapeutic efficacy in epithelial cancer cells.

Elchuri, S. V.; Balasubramanyam, J.; Badrinarayanan, L.; Dhaka, B.; Gowda, H.; Pandey, A.; Subramanian, K.; Lakshmi, B. S.

10.1101/656199 — cancer biology — Posted on 2019-06-06

2653 DECODING THE MECHANOCHEMISTRY OF NEURITE PLASTICITY

Pearce, K.; Bell, M.; Linthicum, W.; Wen, Q.; Srinivasan, J.; Rangamani, P.; Scarlata, S.

10.1101/661975 — biophysics — Posted on 2019-06-06

2654 Genome-wide association studies in Samoans give insight into the genetic architecture of fasting serum lipid levels.

Carlson, J. C.; Weeks, D. E.; Hawley, N. L.; Gao, G.; Cheng, H.; Naseri, T.; Reupena, M. S.; Deka, R.; McGarvey, S. T.; Minster, R. L.

10.1101/411546 — genetics — Posted on 2019-06-06

2655 A malaria transmission model with seasonal mosquito life-history traits

Djidjou-Demasse, R.; Abiodun, G. J.; Adeola, A. M.; Botai, J.

10.1101/377184 — epidemiology — Posted on 2019-06-06

2656 Attentional alterations in migraine: a behavioral and M/EEG study

Masson, R.; Leveque, Y.; Demarquay, G.; ElShafei, H. A.; Fornoni, L.; Lecaignard, F.; Morlet, D.; Bidet-Caulet, A.; Caclin, A.

10.1101/661413 — neuroscience — Posted on 2019-06-06

2657 A spike-timing-dependent plasticity rule for single, clustered and distributed dendritic spines

Tazerart, S.; Mitchell, D. E.; Miranda-Rottmann, S.; Araya, R.

10.1101/397323 — neuroscience — Posted on 2019-06-06

2658 High-yield fabrication of DNA and RNA scaffolds for single molecule force and torque spectroscopy experiments.

Stal Papini, F.; Seifert, M.; Dulin, D.

10.1101/661330 — biophysics — Posted on 2019-06-06

2659 Distinguishing Different Levels Of Consciousness using a Novel Network Causal Activity Measure

Agarwal, N.; Kathpalia, A.; Nagaraj, N.

10.1101/660043 — bioengineering — Posted on 2019-06-06

2660 Evidence for Membrane Complex Assembly in Nanoelectrospray Generated Lipid Bilayers

Wilm, M. S.

10.1101/661231 — synthetic biology — Posted on 2019-06-06

2661 Multi-task learning of a deep k-nearest neighbour network for histopathological image classification and retrieval

Peng, T.; Boxberg, M.; Weichert, W.; Navab, N.; Marr, C.

10.1101/661454 — pathology — Posted on 2019-06-06

2662 Glacial runoff promotes deep burial of sulfur cycling-associated microorganisms in marine sediments

Pelikan, C.; Jaussi, M.; Wasmund, K.; Seidenkrantz, M.-S.; Pearce, C.; Kuzyk, Z. Z. A.; Herbold, C. W.; Roy, H.; Kjeldsen, K. U.; Loy, A.

10.1101/661207 — microbiology — Posted on 2019-06-06

2663 Environmental influences on acoustic divergence in Rhinolophus bats of the Western Ghats-Sri Lanka region

Deshpande, K.; Kelkar, N.

10.1101/661314 — ecology — Posted on 2019-06-06

2664 An ancestral apical brain region contributes to the central complex under the control of foxQ2 in the beetle Tribolium castaneum

He, B.; Buescher, M.; Farnworth, M. S.; Strobl, F.; Stelzer, E.; Koniszewski, N. D. B.; Muehlen, D.; Bucher, G.

10.1101/661199 — developmental biology — Posted on 2019-06-06

2665 Synthesis of Extended, Self-Assembled Biological Membranes containing Membrane Proteins from Gas Phase

Wilm, M. S.

10.1101/661215 — bioengineering — Posted on 2019-06-06

2666 Combinatorial proteomics and transcriptomics identify AMPK in the control of the axonal regeneration programme of DRG sensory neurons after spinal injury

Kong, G.; Zhou, L.; Serger, E.; Palmisano, I.; De Virgiliis, F.; Hutson, T.; McLachlan, E.; Freiwald, A.; La Montanara, P.; Shkura, K.; Puttagunta, R.; Di Giovanni, S.

10.1101/661488 — neuroscience — Posted on 2019-06-06

2667 Chronic Subconvulsive Activity During Early Postnatal Life Produces Autistic Behavior in the Absence of Neurotoxicity in the Juvenile Weanling Period

Friedman, L. K.; Kahen, B.

10.1101/645705 — neuroscience — Posted on 2019-06-06

2668 Behavioral and neural signatures of working memory in childhood

Rosenberg, M. D.; Martinez, S. A.; Rapuano, K. M.; Conley, M. I.; Cohen, A. O.; Cornejo, M. D.; Hagler, D. J.; Anderson, K. M.; Wager, T. D.; Feczko, E.; Earl, E.; Fair, D. A.; Barch, D. M.; Watts, R.; Casey, B.

10.1101/659409 — neuroscience — Posted on 2019-06-06

2669 Biofilm-associated toxin and extracellular protease cooperatively suppress competitors in Bacillus subtilis biofilms

Kobayashi, K.; Ikemoto, Y.

10.1101/663328 — microbiology — Posted on 2019-06-06

2670 SliceIt: A genome-wide resource and visualization tool to design CRISPR/Cas9 screens for editing protein-RNA interaction sites in the human genome

Vemuri, S.; Srivastava, R.; Mir, Q.; Hashemikhabir, S.; Dong, X. C.; Janga, S. C.

10.1101/654640 — bioinformatics — Posted on 2019-06-06

2671 Disentangled behavioral representations

Dezfouli, A.; Ashtiani, H.; Ghattas, O.; Nock, R.; Dayan, P.; Ong, C. S.

10.1101/658252 — bioinformatics — Posted on 2019-06-06

2672 Highly reliable, targeted photothermal cancer therapy combined with thermal dosimetry using indocyanine green lactosome

Nomura, S.; Morimoto, Y.; Tsujimoto, H.; Harada, M.; Saitoh, D.; Hara, I.; Ozeki, E.; Satoh, A.; Takayama, E.; Hase, K.; Kishi, Y.; Ueno, H.

10.1101/659334 — bioengineering — Posted on 2019-06-06

2673 Dysregulated RasGRP1 expression promotes autoimmunity

Baars, M.; Douma, T.; Simeonov, D. R.; Myers, D. R.; Banerjee, S.; Kulhanek, K.; Zwakenberg, S.; Baltissen, M. P.; de Roock, S.; van Wijk, F.; Vermeulen, M.; Marson, A.; Roose, J. P.; Vercoulen, Y.

10.1101/656454 — immunology — Posted on 2019-06-06

2674 Parallel Capsule Net for Ischemic Stroke Segmentation

Sharique, M.; Bondi, U. P.; KrishnaKumar, R.; Sridar, P.; krishnan, R. S. R.

10.1101/661132 — pathology — Posted on 2019-06-06

2675 Determinants of stem cell enrichment in healthy tissues and tumors: implications for non-genetic drug resistance

Komarova, N. L.; Weiss, L. D.; van den Driessche, P.; Lowengrub, J. S.; Wodarz, D.

10.1101/663146 — evolutionary biology — Posted on 2019-06-06

2676 Essential gene networks in acute myeloid leukemia identified using a microRNA-knockout CRISPR library screen

Gabra, M. M.; Pastrello, C.; Machado, N.; Chow, J. T.-S.; Kotlyar, M.; Tokar, T.; Jurisica, I.; Salmena, L.

10.1101/661140 — cancer biology — Posted on 2019-06-06

2677 Integration of a FT expression cassette into CRISPR/Cas9 construct enables fast generation and easy identification of transgene-free mutants in Arabidopsis

Cheng, Y.; Zhang, N.; Hussain, S.; Ahmed, S.; Yang, W.; Wang, S.

10.1101/663070 — plant biology — Posted on 2019-06-06

2678 Hypertriglyceridemia and obesity exacerbate the course of SIRS induced by SAP in Rats

hua, k.; li, r.; cao, l.; lao, w.

10.1101/663104 — pathology — Posted on 2019-06-06

2679 Making the brain-activity-to-information leap using a novel framework: Stimulus Information Representation (SIR)

Schyns, P. G.; Ince, R. A. A.

10.1101/658682 — neuroscience — Posted on 2019-06-06

2680 Is choice-induced preference change due to pre- or post-decision cognitive dissonance resolution?

Lee, D. G.; Daunizeau, J.

10.1101/661116 — neuroscience — Posted on 2019-06-06

2681 Functional analyses of STIM1 mutations reveal a common pathomechanism for tubular aggregate myopathy and Stormorken syndrome

Peche, G. A.; Spiegelhalter, C.; Silva-Rojas, R.; Laporte, J.; Bohm, J.

10.1101/663088 — molecular biology — Posted on 2019-06-06

2682 EPIDEMIOLOGICAL AND SPACE ASPECTS OF THE SCHOOLS OF THE NATIONAL LEPROSY CAMPAIGN: the case of Sobral - Ceara

Amaral, V. F. d.; Linhares, M. S. C.; Neto, F. R. G. X.; Flor, S. M. C.; Sansigolo Kerr, L. R. F.; Dias, L. J. L. F.; Cunha, I. C. K. O.; Freire, N. P.; Silva, M. C. N. d.; Ribeiro, M. A.; Albuquerque, I. M. N.; Cavalcante, A. S. P.

10.1101/663229 — epidemiology — Posted on 2019-06-06

2683 Backward compatibility of whole genome sequencing data with MLVA typing using a new MLVAtype shiny application: the example of Vibrio cholerae

Ambroise, J.; Irenge, L. M.; Durant, J.-F.; Bearzatto, B.; Bwire, G.; Stine, O. C.; Gala, J.-L.

10.1101/663138 — bioinformatics — Posted on 2019-06-06

2684 Neurodegeneration exposes firing rate dependent effects on oscillation dynamics in computational neural networks

Meaney, D. F.; Gabrieli, D.; Schumm, S.; Parvesse, B.

10.1101/663187 — bioengineering — Posted on 2019-06-06

2685 Skeletal descriptions of shape provide unique perceptual information for object recognition

Ayzenberg, V.; Lourenco, S. F.

10.1101/518795 — neuroscience — Posted on 2019-06-06

2686 Agricultural impacts on streams near Nitrate Vulnerable Zones: a case study in the Ebro basin, northern Spain

Ladrera, R.; Belmar, O.; Tomas, R.; Prat, N.; Canedo-Argüelles Iglesias, M.

10.1101/663054 — ecology — Posted on 2019-06-06

2687 Long-term single-cell passaging of human iPSCs fully supports pluripotency and high-efficient trilineage differentiation capacity

Cruvinel, E.; Ogusuku, I.; Cerioni, R.; Goncalves, J.; Goes, M. E.; Silva, A. C.; Pereira, A.; Dariolli, R.; Valadares, M.; Biagi, D. G.

10.1101/663047 — cell biology — Posted on 2019-06-06

2688 A behavior-manipulating virus relative as a source of adaptive genes for parasitoid wasps

Di Giovanni, D.; Lepetit, D.; Boulesteix, M.; Coute, Y.; Ravallec, M.; Varaldi, J.

10.1101/342758 — evolutionary biology — Posted on 2019-06-06

2689 Dilated Saliency U-Net for White Matter Hyperintensities Segmentation using Irregularity Age Map

Jeong, Y.; Rachmadi, M. F.; Valdes Hernandez, M. d. C.; Komura, T.

10.1101/550517 — neuroscience — Posted on 2019-06-05

2690 Cognitive capacity limits are remediated by practice-induced plasticity in a striatal-cortical network

Garner, K.; Garrido, M. I.; Dux, P. E.

10.1101/564450 — neuroscience — Posted on 2019-06-05

2691 Evaluation of DNA extraction methods on individual helminth egg and larval stages for whole genome sequencing

Doyle, S. R.; Sankaranarayanan, G.; Allan, F.; Berger, D.; Jimenez Castro, P. D.; Collins, J. B.; Crellen, T.; Durque-Correa, M. A.; Ellis, P.; Jaleta, T. G.; Laing, R.; Maitland, K.; McCarthy, C.; Moundai, T.; Softley, B.; Thiele, E.; Ouakou, P. T.; Tushabe, J. V.; Webster, J. P.; Weiss, A. J.; Lok, J. B.; Devaney, E.; Kaplan, R. M.; Cotton, J. A.; Berriman, M.; Holroyd, N.

10.1101/616672 — genomics — Posted on 2019-06-05

2692 Discovery of compounds inhibiting the ADP-ribosyltransferase activity of pertussis toxin

Ashok, Y.; Miettinen, M.; de Oliveira, D. K. H.; Tamirat, M. Z.; Näreoja, K.; Tiwari, A.; Hottiger, M. O.; Johnson, M. S.; Lehtiï, L.; Pulliainen, A.

10.1101/637801 — microbiology — Posted on 2019-06-05

2693 Antibiotics can be used to contain drug-resistant bacteria by maintaining sufficiently large sensitive populations

Hansen, E.; Karslake, J.; Woods, R. J.; Read, A. F.; Wood, K. B.

10.1101/638924 — microbiology — Posted on 2019-06-05

2694 Transcriptomic data support a nocturnal bottleneck in the ancestor to gecko lizards

Pinto, B. J.; Nielsen, S. V.; Gamble, T.

10.1101/592873 — evolutionary biology — Posted on 2019-06-05

2695 Recording temporal data onto DNA with minutes resolution

Bhan, N.; Strutz, J.; Glaser, J. I.; Kalhor, R.; Boyden, E.; Church, G. M.; Kording, K. P.; Tyo, K. E. J.

10.1101/634790 — synthetic biology — Posted on 2019-06-05

2696 A frequency-domain machine learning method for dual-calibrated fMRI mapping of oxygen extraction fraction (OEF) and cerebral metabolic rate of oxygen consumption (CMRO2)

Germuska, M.; Chandler, H.; Okell, T.; Fasano, F.; Tomassini, V.; Murphy, K.; Wise, R.

10.1101/660357 — neuroscience — Posted on 2019-06-05

2697 Metastable neural dynamics underlies cognitive performance across multiple behavioural paradigms

Alderson, T. H.; Bokde, A. L.; Kelso, J. A. S.; Maguire, L.; Coyle, D.

10.1101/657569 — neuroscience — Posted on 2019-06-05

2698 Yap suppresses T cell function and infiltration in the tumor microenvironment

Stampouloglou, E.; Federico, A.; Slaby, E.; Monti, S.; Szeto, G. L.; Varelas, X.

10.1101/644757 — cancer biology — Posted on 2019-06-05

2699 A mechanistic model for the negative binomial distribution of single-cell mRNA counts

Amrhein, L.; Harsha, K.; Fuchs, C.

10.1101/657619 — bioinformatics — Posted on 2019-06-05

2700 High Spatial Resolution Ambient Ionization Mass Spectrometry Imaging Using Microscopy Image Fusion

Chen, C.-L.; Lin, L.-E.; Huang, Y.-C.; Chung, H.-H.; Chen, K.-C.; Peng, Y.-J.; Lin, C.-W.; Ding, S.-T.; Shen, T.-L.; Hsu, C.-C.

10.1101/657494 — bioinformatics — Posted on 2019-06-05

2701 Behavioral and metabolic consequences after a single generation of angling selection in brown trout

Prokkola, J. M.; Alioravainen, N.; Mehtatalo, L.; Hyvarinen, P.; Lemopoulos, A.; Metso, S.; Vainikka, A.

10.1101/611293 — animal behavior and cognition — Posted on 2019-06-05

2702 A global screen for assembly state changes of the mitotic proteome by SEC-SWATH-MS

Heusel, M.; Frank, M.; Koehler, M.; Amon, S.; Frommelt, F.; Rosenberger, G.; Bludau, I.; Aulakh, S.; Linder, M. I.; Liu, Y.; Collins, B. C.; Matthias, G.; Ulrike, K.; Aebersold, R.

10.1101/633479 — systems biology — Posted on 2019-06-05

2703 Is proton magnetic resonance spectroscopy a valid method to quantify muscle carnosine in humans?

Silva, V. d. E.; Painelli, V. d. S.; Shinjo, S. K.; Cilli, E. M.; Sale, C.; Gualano, B.; Otaduy, M. C.; Artioli, G. G.

10.1101/568923 — physiology — Posted on 2019-06-05

2704 Cell shape and antibiotic resistance is maintained by the activity of multiple FtsW and RodA enzymes in Listeria monocytogenes

Rismondo, J.; Halbedel, S.; Grundling, A.

10.1101/589911 — microbiology — Posted on 2019-06-05

2705 PopTargs: A database for studying population evolutionary genetics of human microRNA target sites

Hatlen, A.; Helmy, M.; Marco, A.

10.1101/613372 — bioinformatics — Posted on 2019-06-05

2706 LFMD: a new likelihood-based method to detect low-frequency mutations without molecular tags

Ye, R.; Ruan, J.; Zhuang, X.; Qi, Y.; An, Y.; Xu, J.; Mak, T.; Liu, X.; Yang, H.; Xu, X.; Baum, L.; Nie, C.; Sham, P. C.

10.1101/617381 — bioinformatics — Posted on 2019-06-05

2707 Multidimensional analysis of extended molecular dynamics simulations reveals the complexity of signal transduction by the histamine H3 membrane receptor

Herrera-Zuniga, L. D.; Moreno-Vargas, L. M.; Correa-Basurto, J.; Prada, D.; Curmi, P.; Arrang, J.-M.; Maroun, R. C.

10.1101/604793 — bioinformatics — Posted on 2019-06-05

2708 A general in vitro assay to study enzymatic activities of the ubiquitin system

Zuo, Y.; Jiang, K.; Chong, B. K.; Finley, D.; Klenerman, D.; Ye, Y.

10.1101/660894 — biochemistry — Posted on 2019-06-05

2709 libsbmljs - Enabling Web--Based SBML Tools

Medley, K. K.; Hellerstein, J.; Sauro, H. M.

10.1101/594804 — systems biology — Posted on 2019-06-05

2710 Anomalous Perception Of Biological Motion In Autism: A Conceptual Review And Meta-Analysis

Federici, A.; Parma, V.; Vicovaro, M.; Radassao, L.; Casartelli, L.; Ronconi, L.

10.1101/530030 — neuroscience — Posted on 2019-06-05

2711 Fecal short-chain fatty acids are not predictive of colonic tumor status and cannot be predicted based on bacterial community structure

Sze, M. A.; Topcuoglu, B. D.; Lesniak, N. A.; Ruffin, M. T.; Schloss, P. D.

10.1101/604678 — microbiology — Posted on 2019-06-05

2712 Mathematical models incorporating a multi-stage cell cycle replicate normally-hidden innate synchronisation in cell proliferation

Vittadello, S.; McCue, S.; Gunasingh, G.; Haass, N.; Simpson, M.

10.1101/557702 — biophysics — Posted on 2019-06-05

2713 Generalizing to generalize: when (and when not) to be compositional in task structure learning

Franklin, N. T.; Frank, M. J.

10.1101/547406 — neuroscience — Posted on 2019-06-05

2714 Testing the Regulatory Consequences of 1,049 Schizophrenia Associated Variants With a Massively Parallel Reporter Assay

Myint, L.; Wang, R.; Boukas, L.; Hansen, K. D.; Goff, L. A.; Avramopoulos, D.

10.1101/447557 — genetics — Posted on 2019-06-05

2715 Single cell RNA-Seq analysis identifies molecular mechanisms controlling hypothalamic patterning and differentiation.

Kim, D. W.; Washington, P. W.; Wang, Z. Q.; Lin, S.; Sun, C.; Jiang, L.; Blackshaw, S.

10.1101/657148 — neuroscience — Posted on 2019-06-05

2716 A Dependency Capturing Code for Robust Object Representation

Raj, R.; Dahlen, D.; Duyck, K.; Yu, C. R.

10.1101/662130 — neuroscience — Posted on 2019-06-05

2717 Analysis of meiosis in Pristionchus pacificus reveals plasticity in homolog pairing and synapsis within the nematode lineage

Rillo-Bohn, R.; Adilardi, R.; Avsaroglu, B.; Stevens, L.; Kohler, S.; Bayes, J.; Wang, C.; Lin, S.; Baskevitch, K.; Dernburg, A.

10.1101/662049 — cell biology — Posted on 2019-06-05

2718 ESCRT machinery mediates selective microautophagy of endoplasmic reticulum

Schaefer, J.; Schessner, J.; Bircham, P.; Tsuji, T.; Funaya, C.; Schaeff, K.; Ruffini, G.; Papagiannidis, D.; Knop, M.; Fujimoto, T.; Schuck, S.

10.1101/661306 — cell biology — Posted on 2019-06-05

2719 Bidirectional action of nitric oxide on mitochondrial respiration and permeability transition pore induced by calcium and palmitoylcarnitine

Dynnik, V. V.; Grishina, E. V.; Fedotcheva, N. I.

10.1101/443986 — biochemistry — Posted on 2019-06-05

2720 Molecular design, optimization and genomic integration of chimeric B cell receptors in murine B cells

Pesch, T.; Bonati, L.; Kelton, W.; Parola, C.; Ehling, R. A.; Csepregi, L.; Kitamura, D.; Reddy, S. T.

10.1101/516369 — immunology — Posted on 2019-06-05

2721 FST and kinship for arbitrary population structures I: Generalized definitions

Ochoa, A.; Storey, J. D.

10.1101/083915 — genetics — Posted on 2019-06-05

2722 Multi-model inference of non-random mating from an information theoretic approach

Carvajal-Rodriguez, A.

10.1101/305730 — evolutionary biology — Posted on 2019-06-05

2723 Genome-wide transcription factor binding in leaves from C3 and C4 grasses

Burgess, S. J.; Reyna-Llorens, I.; Stevenson, S. R.; Singh, P.; Jaeger, K.; Hibberd, J. M.

10.1101/165787 — plant biology — Posted on 2019-06-05

2724 FST and kinship for arbitrary population structures II: Method of moments estimators

Ochoa, A.; Storey, J. D.

10.1101/083923 — genetics — Posted on 2019-06-05

2725 Enhancing virtual bronchoscopy with intra-operative data using a multi-objective GAN

Gil Resina, D.; Esteban Lansaque, A.; Borras, A.; Sanchez Ramos, C.

10.1101/658807 — bioengineering — Posted on 2019-06-05

2726 Mesenchymal stem cells restore local microenvironment and systemically suppress leukemia via reprogramming macrophages

Xia, C.; Wang, T.; Cheng, H.; Dong, Y.; Weng, Q.; Sun, G.; Zhou, P.; Wang, K.; Liu, X.; Geng, Y.; Ma, S.; Hao, S.; Xu, L.; Guan, Y.; Du, J.; Du, X.; Li, Y.; Zhu, X.; Shi, Y.; Xu, S.; Wang, D.; Cheng, T.; Wang, J.

10.1101/661298 — cancer biology — Posted on 2019-06-05

2727 Targeting destabilized DNA G-quadruplexes and aberrant splicing in drug-resistant glioblastoma

Tiek, D. M.; Razaghi, R.; Jin, L.; Sadowski, N.; Alamillo-Ferrer, C.; Hogg, J. R.; Haddad, B. R.; Drewry, D. H.; Wells, C. I.; Pickett, J. E.; Zuercher, W. J.; Timp, W.; Riggins, R. B.

10.1101/661660 — cancer biology — Posted on 2019-06-05

2728 Methylation at nucleotide C62 in spliceosomal RNA U6 alters mRNA splicing which is important for embryonic development

Ogren, A.; Kibiryeva, N.; Marshall, J.; O'Brien, J. E.; Bittel, D. C.

10.1101/661876 — genetics — Posted on 2019-06-05

2729 Schistosomiasis among pregnant women in the Njombe-Penja health district, Littoral region of Cameroon: A cross sectional study

TONGA, C.; Ngo Bayoi, C.; Tchanga, C. F.; Yengue, J. F.; wepnje, G. B.; Nyabeyeu, H. N.; Kangam, L.; Koudjip, L. N.; Akono, P. N.; Lehman, L. G.

10.1101/661900 — epidemiology — Posted on 2019-06-05

2730 On the Effectiveness of UAS for Anti-Poaching in the African Arid Savanna

Silverberg, L. M.; vanVuuren, M.; vanVuuren, R.; Lutz, G.

10.1101/660126 — zoology — Posted on 2019-06-05

2731 A protein-RNA interaction atlas of the ribosome biogenesis factor AATF

Kaiser, R.; Ignarski, M.; Van Nostrand, E. L.; Frese, C.; Jain, M.; Cukoski, S.; Heinen, H.; Schaechter, M.; Seufert, L.; Bunte, K.; Frommolt, P.; Keller, P.; Helm, M.; Bohl, K.; Höhne, M.; Schermer, B.; Benzing, T.; Höpker, K.; Dieterich, C.; Yeo, G. W.; Mueller, R.-U.; Fabretti, F.

10.1101/446260 — molecular biology — Posted on 2019-06-05

2732 3D light sheet fluorescence microscopy of lungs to dissect local host immune - Aspergillus fumigatus interactions

Amich, J.; Mokhtari, Z.; Strobel, M.; Vialetto, E.; Kalleda, N.; Jarick, K.; Brede, C.; Jordan-Garrote, A.-L.; Thusek, S.; Schmiedgen, K.; Arslan, B.; Pinnecker, J.; Thornton, C. R.; Gunzer, M.; Krappmann, S.; Einsele, H.; Heinze, K. G.; Beilhack, A.

10.1101/661157 — immunology — Posted on 2019-06-05

2733 Household socio-economic status and likelihood of HIV infection among under five-year children in Muheza district, north-eastern Tanzania

Bwana, V. M.; Simulundu, E.; Mboera, L. E. G.; Mfinanga, S. G.; Michelo, C.

10.1101/661801 — epidemiology — Posted on 2019-06-05

2734 The transcription factor Shox2 shapes thalamocortical neuron firing properties by regulation of key ion channels

Yu, D.; Maroteaux, M.; Song, Y.; Han, X.; Febbo, I.; Namboodri, C.; Meyer, E.; Rowe, S.; Chen, Y.; Schrader, L.

10.1101/660662 — neuroscience — Posted on 2019-06-05

2735 Motoneuron-derived Activinβ regulates Drosophila body size and tissue-scaling during larval growth and adult development

Moss-Taylor, L.; Upadhyay, A.; Pan, X.; Kim, M.-J.; O'Connor, M. B.

10.1101/661363 — developmental biology — Posted on 2019-06-05

2736 Endogenous pioneer neutrophils release NETs during the swarming response in zebrafish

Isles, H. M.; Loynes, C. A.; Hamilton, N.; Muir, C. F.; Kadochnikova, A.; Henry, K. M.; Kadirkamanathan, V.; Renshaw, S. A.; Elks, P. M.

10.1101/521450 — immunology — Posted on 2019-06-05

2737 Assessing aneuploidy with repetitive element sequencing.

Douville, C.; Cohen, J. D.; Ptak, J.; Popoli, M.; Schaefer, J.; Silliman, N.; Dobbyn, L.; Schoen, R. E.; Tie, J.; Gibbs, P.; Goggins, M.; Wolfgang, C. L.; Wang, T.-L.; Shih, I.-M.; Karchin, R.; Lennon, A. M.; Hruban, R. H.; Tomasetti, C.; Bettegowda, C.; Kinzler, K. W.; Papadopoulos, N.; Vogelstein, B.

10.1101/660258 — cancer biology — Posted on 2019-06-05

2738 Combined EGFR and ROCK inhibition in TNBC leads to cell death via impaired autophagic flux

Rontogianni, S.; Iskit, S.; van Doorn, S.; Peeper, D. S.; Altelaar, M.

10.1101/661272 — cancer biology — Posted on 2019-06-05

2739 Precapillary sphincters control cerebral blood flow

Grubb, S.; Cai, C.; Hald, B. O.; Khennouf, L.; Fordsmann, J. C.; Murmu, R.; Jensen, A. G. K.; Zambach, S. A.; Lauritzen, M. J.

10.1101/657486 — neuroscience — Posted on 2019-06-05

2740 Decoding Speech and Music Stimuli from the Frequency Following Response

Losorelli, S.; Kaneshiro, B.; Musacchia, G. A.; Blevins, N. H.; Fitzgerald, M. B.

10.1101/661066 — neuroscience — Posted on 2019-06-05

2741 A Drosophila Insulator Interacting Protein Suppresses Enhancer-Blocking Function and Modulates Replication Timing

Stow, E. C.; Schoborg, T.; Davenport, N. M.; Simmons, J. R.; Labrador, M.

10.1101/661041 — molecular biology — Posted on 2019-06-05

2742 Multi-generational analysis and manipulation of chromosomes in a polyploid cyanobacterium

Cameron, J.; Moore, K. A.; Tay, J. W.

10.1101/661256 — molecular biology — Posted on 2019-06-05

2743 Asian Zika virus isolate significantly changes the transcriptional profile and alternative RNA splicing events in a neuroblastoma cell line

Bonenfant, G.; Meng, R.; Shotwell, C.; Berglund, J. A.; Pager, C. T.

10.1101/660209 — microbiology — Posted on 2019-06-05

2744 Measuring the distribution of fitness effects in somatic evolution by combining clonal dynamics with dN/dS ratios

Williams, M.; Zapata, L.; Werner, B.; Barnes, C. P.; Sottoriva, A.; Graham, T. A.

10.1101/661264 — bioinformatics — Posted on 2019-06-05

2745 Inferring biosynthetic and gene regulatory networks from Artemisia annua RNA sequencing data on a credit card-sized ARM computer

Tan, Q. W.; Mutwil, M.

10.1101/661058 — bioinformatics — Posted on 2019-06-05

2746 Temperature and polarity based evolutionary model of the ribosomal complex in Thermus thermophilus and Escherichia coli.

Tripathi, R.

10.1101/657692 — biochemistry — Posted on 2019-06-05

2747 Artificial intelligence method to design and fold alpha-helix structural proteins from the primary amino acid sequence

Qin, Z.; Wu, L.; Sun, H.; Huo, S.; Ma, T.; Lim, E.; Chen, P.-Y.; Marelli, B.; Buehler, M. J.

10.1101/660639 — biochemistry — Posted on 2019-06-05

2748 Young Genes are More Responsive to Environmental Stress than Ancient Genes in Budding Yeasts

Doughty, T. W.; Domenzain, I.; Millan-Oropeza, A.; Montini, N.; de Groot, P. A.; Pereira, R.; Nielsen, J.; Henry, C.; Daran, J.-M. G.; Siewers, V.; Morrissey, J. P.

10.1101/660274 — systems biology — Posted on 2019-06-05

2749 Selective Activation of TASK-3-containing K+ Channels Reveals Their Therapeutic Potentials in Analgesia

10.1101/657387 — pharmacology and toxicology — Posted on 2019-06-05

2750 Comprehensive Integrated Anatomical And Molecular Atlas Of Rodent Intrinsic Cardiac Nervous System

Achanta, S.; Gorky, J. M.; Leung, C.; Moss, A.; Robbins, S.; Eisenman, L.; Chen, J.; Tappan, S.; Heal, M.; Farhani, N.; Huffman, T.; Cheng, Z.; Vadigepalli, R.; Schwaber, J. S.

10.1101/661033 — neuroscience — Posted on 2019-06-05

2751 Vector competence of Aedes aegypti, Aedes albopictus, and Culex quinquefasciatus mosquitoes for Mayaro virus

Moreira, L. A.; Pereira, T. N.; Carvalho, F. D.; De Mendonca, S. F.; Rocha, M. N.

10.1101/661884 — microbiology — Posted on 2019-06-05

2752 Re-introduction of dengue virus serotype 2 in the State of Rio de Janeiro after almost a decade of epidemiological silence

Torres, M. C.; de Bruycker Nogueira, F.; Fernandes, C. A.; Louzada Silva Meira, G.; Ferreira de Aguiar, S.; Chieppe, A. O.; Bispo de Filippis, A. M.

10.1101/661868 — microbiology — Posted on 2019-06-05

2753 Development of a potent and protective germline-like antibody lineage against Zika virus in a convalescent human

Gao, F.; Lin, X.; He, L.; Wang, R.; Wang, H.; Shi, X.; Zhang, F.; Yin, C.; Zhang, L.; Zhu, J.; Yu, L.

10.1101/661918 — microbiology — Posted on 2019-06-05

2754 Genetics of 38 blood and urine biomarkers in the UK Biobank

Sinnott-Armstrong, N.; Tanigawa, Y. A.; Amar, D.; Mars, N. J.; Aguirre, M. A.; Venkataraman, G. R.; Wainberg, M.; Ollila, H. M.; Pirruccello, J. P.; Qian, J. A.; Shcherbina, A. A.; FinnGen, ; Rodriguez, F.; Assimes, T. L.; Agarwala, V.; Tibshirani, R. J.; Hastie, T. J.; Ripatti, S.; Pritchard, J. K.; Daly, M. J.; Rivas, M. A.

10.1101/660506 — genetics — Posted on 2019-06-05

2755 Invasive plants facilitated by socioeconomic change shelter vectors of scrub typhus and spotted fever

Wei, C.-Y.; Wang, J.-K.; Shih, H.-C.; Wang, H.-C.; Kuo, C.-C.

10.1101/661892 — ecology — Posted on 2019-06-05

2756 Risk factors associated with loss of hepatitis B virus surface antibody in patients with HBV surface-antigen negative/surface antibody positive serostatus receiving biologic DMARDs to treat rheumatic diseases - a nested case-control study

Hung, M.-H.; Tien, Y.-C.; Chiu, Y.-M.

10.1101/661850 — scientific communication and education — Posted on 2019-06-05

2757 The small GTPase Rab11F represents a molecular marker within the secretory pathway required for the nitrogen-fixing symbiosis

Nounurai, P.; Densow, H.; Bednarz, H.; Niehaus, K.

10.1101/661835 — plant biology — Posted on 2019-06-05

2758 Electron microscopy characterization of minerals formed in vitro by human bone cells and vascular smooth muscle cells

Tsolaki, E.; Didierlaurent, L.; Müller, E.; Rottmar, M.; Latif, N.; Chester, A. H.; Herrmann, I. K.; Bertazzo, S.

10.1101/661785 — pathology — Posted on 2019-06-05

2759 Effect of adiposity on leukocyte telomere length in US adults by race/ethnicity: The National Health and Nutrition Examination Survey

Davis, S. K.; Xu, R.; Khan, R. J.; Gaye, A.; Liu, Y.

10.1101/661819 — epidemiology — Posted on 2019-06-05

2760 HEALTH CONDITIONS ASSOCIATED WITH OVERWEIGHT IN CLIMACTERIC WOMEN

Marques, M. S.; Ferreira Freitas, R.; Araujo Veloso Popoff, D.; Piana Santos Lima de Oliveira, F.; Rodrigues Moreira, M. H.; Araujo Drummond, A. M.; Schmidt Franca, D.; Nogueira dos Santos, L. A.; de Siqueira e Rocha, M. E.; Brant Rocha, J. P.; Brant Rocha, M. C.; Santos Figueiredo Brito, M. F.; Prates Caldeira, A.; Maria Borborema, F. A.; Santos, V. M.; Santos Brant Rocha, J.

10.1101/661827 — epidemiology — Posted on 2019-06-05

2761 Polyamine biosynthesis in Xenopus laevis: the gene xlAZIN2/xlODC2 encodes a lysine decarboxylase

Penafiel, R.; Lambertos, A.

10.1101/661843 — biochemistry — Posted on 2019-06-05

2762 Calcium dobesilate reduces VEGF signaling by interfering with heparan sulfate binding site and protects from vascular complications in diabetic mice

Njau, F.; Shushakova, N.; Schenk, H.; Wulfmeyer, V. C.; Bollin, R.; Menne, J.; Haller, H.

10.1101/661793 — cell biology — Posted on 2019-06-05

2763 Dynamic evolution in the key honey bee pathogen Deformed wing virus

Ryabov, E. V.; Childers, A. K.; Lopez, D.; Grubbs, K.; Posada-Florez, F.; Weaver, D.; Girten, W.; vanEngelsdorp, D.; Chen, Y.; Evans, J. D.

10.1101/653543 — microbiology — Posted on 2019-06-05

2764 A Novel Antenna Protein Complex in the Life Cycle of Cyanobacterial Photosystem II

Weisz, D. A.; Johnson, V. M.; Niedzwiedzki, D. M.; Shinn, M. K.; Liu, H.; Klitzke, C. F.; Gross, M. L.; Blankenship, R. E.; Lohman, T. M.; Pakrasi, H. B.

10.1101/660712 — plant biology — Posted on 2019-06-05

2765 Transcranial focused ultrasound enhances behavioral and network mechanisms underlying response inhibition in humans

Fine, J. M.; Fini, M.; Mysore, A. S.; Tyler, W.; Santello, M.

10.1101/649665 — neuroscience — Posted on 2019-06-05

2766 Identification of a master regulator of differentiation in Toxoplasma

Waldman, B. S.; Schwarz, D.; Wadsworth, M. H.; Saeij, J. P. J.; Shalek, A. K.; Lourido, S.

10.1101/660753 — microbiology — Posted on 2019-06-05

2767 Cross-species regulatory sequence activity prediction

Kelley, D. R.

10.1101/660563 — bioinformatics — Posted on 2019-06-05

2768 Double triage to identify poorly annotated genes in Maize: The missing link in community curation

Tello-Ruiz, M. K.; Marco, C. F.; Hsu, F.-M.; Khangura, R. S.; Qiao, P.; Sapkota, S.; Stitzer, M. C.; Wasikowski, R.; Wu, H.; Zhan, J.; Chougule, K.; Barone, L. C.; Ghiban, C.; Muna, D.; Olson, A. C.; Wang, L. C.; Ware, D.; Micklos, D. A.

10.1101/654848 — bioinformatics — Posted on 2019-06-05

2769 Memorability of photographs in subjective cognitive decline and mild cognitive impairment: implications for cognitive assessment

Bainbridge, W. A.; Berron, D.; Schütze, H.; Cardenas-Blanco, A.; Metzger, C.; Dobisch, L.; Bittner, D.; Glanz, W.; Spottke, A.; Rudolph, J.; Brosseron, F.; Buerger, K.; Janowitz, D.; Fliessbach, K.; Heneka, M.; Laske, C.; Buchmann, M.; Peters, O.; Diesing, D.; Li, S.; Priller, J.; Spruth, E. J.; Altenstein, S.; Schneider, A.; Kofler, B.; Teipel, S.; Kilimann, I.; Wiltfang, J.; Bartels, C.; Wolfsgruber, S.; Wagner, M.; Jessen, F.; Baker, C. I.; Düzel, E.

10.1101/660365 — neuroscience — Posted on 2019-06-05

2770 Eating in a losing cause: anorexia and macronutrient manipulation by a cockroach fails to boost immunity

Sieksmeyer, T.; He, S.; Kuropka, B.; Weise, C.; Johnston, P. R.; Rodriguez Rojas, A.; McMahon, D.

10.1101/652826 — ecology — Posted on 2019-06-05

2771 Live cell single molecule tracking and localization microscopy of bioorthogonally labeled plasma membrane proteins

König, A. I.; Sorkin, R.; Alon, A.; Nachmias, D.; Dhara, K.; Brand, G.; Yifrach, O.; Roichman, Y.; Arbely, E.; Elia, N.

10.1101/660118 — biophysics — Posted on 2019-06-05

2772 Transcriptional natural variation at FLM induces synergistic pleiotropy in Arabidopsis thaliana

Hanemian, M.; Vasseur, F.; Marchadier, E.; Gilbault, E.; Bresson, J.; Gy, I.; Violle, C.; Loudet, O.

10.1101/658013 — plant biology — Posted on 2019-06-05

2773 Transcriptional profiling of the murine airway response to acute ozone exposure

Tovar, A.; Smith, G. J.; Thomas, J. M.; Harkema, J. R.; Kelada, S. N. P.

10.1101/660316 — pharmacology and toxicology — Posted on 2019-06-05

2774 Tonic resting-state hubness supports high-frequency activity defined verbal-memory encoding network in epilepsy

Chaitanya, G.; Hinds, W.; Kragel, J.; He, X.; Sideman, N.; Ezzyat, Y.; Sperling, M. R.; Sharan, A.; Tracy, J. I.

10.1101/660696 — neuroscience — Posted on 2019-06-05

2775 A frequency-domain machine learning method for dual-calibrated fMRI mapping of oxygen extraction fraction (OEF) and cerebral metabolic rate of oxygen consumption (CMRO2)

Germuska, M.; Chandler, H.; Okell, T.; Fasano, F.; Tomassini, V.; Murphy, K.; Wise, R.

10.1101/660357 — neuroscience — Posted on 2019-06-05

2776 The oncogenic Kaposi sarcoma-associated herpesvirus encodes a mimic of the tumor suppressive miR-15/16 miRNA family

Morrison, K.; Manzano, M.; Chung, K.; Schipma, M. J.; Bartom, E. T.; Gottwein, E.

10.1101/660811 — microbiology — Posted on 2019-06-05

2777 VIRGO, a comprehensive non-redundant gene catalog, reveals extensive within community intraspecies diversity in the human vagina

Ma, B.; France, M.; Crabtree, J.; Holm, J.; Humphrys, M.; Brotman, R.; Ravel, J.

10.1101/660498 — genomics — Posted on 2019-06-05

2778 Ultrafast immunostaining of organ-scale tissues for scalable proteomic phenotyping

Yun, D. H.; Park, Y.-G.; Cho, J. H.; Kamentsky, L.; Evans, N. B.; Albanese, A.; Xie, K.; Swaney, J.; Sohn, C. H.; Tian, Y.; Zhang, Q.; Drummond, G.; Guan, W.; DiNapoli, N.; Choi, H.; Jung, H.-Y.; Ruelas, L.; Feng, G.; Chung, K.

10.1101/660373 — bioengineering — Posted on 2019-06-05

2779 Non-coding RNAs control metabolic state in mycobacteria

Ramesh, A.; Mehta, D.; K, A.; A, A.; Gupta, R.

10.1101/660928 — biochemistry — Posted on 2019-06-05

2780 A new set of endogenous control genes for use in quantitative real-time PCR experiments show that formin Ldia2dex transcripts are enriched in the early pond snail embryo

Johnson, H. F.; Davison, A.

10.1101/660381 — genetics — Posted on 2019-06-05

2781 Identification of two independent COL5A1 variants in dogs with Ehlers Danlos syndrome

Bauer, A.; Bateman, J. F.; Lamande, S.; Hanssen, E.; Kirejczyk, S.; Yee, M.; Ramiche, A.; Jagannathan, V.; Welle, M.; Leeb, T. F.; Bateman, F.

10.1101/660407 — genetics — Posted on 2019-06-05

2782 Neural correlates of conscious visual perception lie outside the visual system: evidence from the double-drift illusion

Liu, S.; Yu, Q.; Tse, P. U.; Cavanagh, P.

10.1101/660597 — neuroscience — Posted on 2019-06-05

2783 Understanding Environmental DNA

Kelly, R. P.; Shelton, A. O.; Gallego, R.

10.1101/660530 — molecular biology — Posted on 2019-06-05

2784 Aquila: diploid personal genome assembly and comprehensive variant detection based on linked reads

Zhou, X.; Zhang, L.; Weng, Z.; Dill, D. L.; Sidow, A.

10.1101/660605 — genomics — Posted on 2019-06-05

2785 Allosteric Motions of the CRISPR-Cas9 HNH Nuclease Probed by NMR and Molecular Dynamics

East, K. W.; Newton, J. C.; Morzan, U. N.; Acharya, A.; Skeens, E.; Jogl, G.; Batista, V. S.; Palermo, G.; Lisi, G. P.

10.1101/660613 — biophysics — Posted on 2019-06-05

2786 Autophosphorylation of the CK1 kinase domain regulates enzyme activity and function

Cullati, S. N.; Chen, J.-S.; Gould, K. L.

10.1101/660548 — biochemistry — Posted on 2019-06-05

2787 Multiple PLCβ signaling pathways in taste receptor cells contribute to the detection of bitter, sweet and umami stimuli

Dutta Banik, D.; Benfey, E. D.; Martin, L. E.; Kay, K. E.; Loney, G. C.; Nelson, A. R.; Ahart, Z. C.; Kemp, B. T.; Kemp, B. R.; Vandenbeuch, A.; Torregrossa, A.-M.; Medler, K. F.

10.1101/660589 — neuroscience — Posted on 2019-06-05

2788 Smoking and blood DNA methylation: novel associations, replication of previous findings and assessment of reversibility

Dugue, P.-A.; Jung, C.-H.; Joo, J. E.; Wang, X.; Wong, E. M.; Makalic, E.; Schmidt, D.; Baglietto, L.; Severi, G.; Southey, M. C.; English, D. R.; Giles, G. G.; Milne, R. L.

10.1101/660878 — genomics — Posted on 2019-06-05

2789 The genomic architecture of fitness is a major driver of population viability during rapid environmental change

Kardos, M.; Luikart, G.

10.1101/660803 — evolutionary biology — Posted on 2019-06-05

2790 A general in vitro assay to study enzymatic activities of the ubiquitin system

Ye, Y.; Zuo, Y.; Jiang, K.; Chong, B. K.; Finley, D.; Klenerman, D.

10.1101/660894 — biochemistry — Posted on 2019-06-05

2791 Increase in ribosomal proteins activity: Translational reprogramming in Vanilla planifolia Jacks., against Fusarium infection

Solano De la Cruz, M. T.; Adame Garcia, J.; Gregorio Jorge, J.; Jimenez Jacinto, V.; Vega Alvarado, L.; Iglesias Andreu, L.; Escobar Hernandez, E. E.; Luna Rodriguez, M.

10.1101/660860 — genomics — Posted on 2019-06-05

2792 Disorder mediated oligomerization of DISC1 proteins revealed by coarse-grained computer simulations.

Roche, J.; Potoyan, D. A.

10.1101/660910 — biophysics — Posted on 2019-06-05

2793 Seizures cause sustained microvascular constriction associated with astrocytic and vascular smooth muscle Ca2+ recruitment

Teskey, G. C.; Tran, C. H. T.; George, A. G.; Gordon, G. R.

10.1101/644039 — neuroscience — Posted on 2019-06-05

2794 T Lymphopoiesis from Pluripotent Stem Cells by Defined Transcription Factors at Single Cell Resolution

Guo, R.; Hu, F.; Weng, Q.; Lv, C.; Wu, H.; Liu, L.; Li, Z.; Zeng, Y.; Bai, Z.; Zhang, M.; Liu, Y.; Liu, X.; Xia, C.; Wang, T.; Zhou, P.; Wang, K.; Dong, Y.; Luo, Y.; Zhang, X.; Guan, Y.; Geng, Y.; Du, J.; Li, Y.; Lan, Y.; Chen, J.; Liu, B.; Wang, J.

10.1101/660977 — immunology — Posted on 2019-06-05

2795 Co-expression of calcium channels and delayed rectifier potassium channels protects the heart from proarrhythmic events

Ballouz, S.; Mangala, M. M.; Perry, M. D.; Heitmann, S.; Gillis, J. A.; Hill, A. P.; Vandenberg, J. I.

10.1101/659821 — biophysics — Posted on 2019-06-05

2796 Enhanced efficacy of vaccination with vaccinia virus in old versus young mice

Shmeleva, E. V.; Smith, G. L.; Ferguson, B. J.

10.1101/658005 — immunology — Posted on 2019-06-04

2797 CEP290 myosin-tail homology domain is essential for protein confinement between inner and outer segments in photoreceptors

Datta, P.; Hendrickson, B.; Brendalen, S.; Ruffcorn, A.; Seo, S.

10.1101/660738 — cell biology — Posted on 2019-06-05

2798 Structural insights into ligand efficacy and activation of the glucagon receptor

Hilger, D.; Krishna Kumar, K.; Hu, H.; Pedersen, M. F.; Giehm, L.; Mathiesen, J. M.; Skiniotis, G.; Kobilka, B. K.

10.1101/660837 — biophysics — Posted on 2019-06-05

2799 In the presence of population structure: From genomics to candidate genes underlying local adaptation

Price, N.; Lopez, L.; Platts, A. E.; Lasky, J. R.; McKay, J. K.

10.1101/642306 — evolutionary biology — Posted on 2019-06-04

2800 Modified Potential Functions Result in Enhanced Predictions of a Protein Complex by All-Atom MD Simulations, Confirming a Step-wise Association Process for Native PPIs

Li, Z.-l.; Buck, M.

10.1101/241810 — biophysics — Posted on 2019-06-04

2801 THE FREQUENCY OF CORTICAL MICROSTIMULATION SHAPES ARTIFICIAL TOUCH

Callier, T.; Brantly, N. W.; Caravelli, A.; Bensmaia, S. J.

10.1101/659516 — neuroscience — Posted on 2019-06-04

2802 A live-cell imaging system for visualizing the transport of Marburg virus nucleocapsid-like structures

Takamatsu, Y.; Noda, T.; Becker, S.

10.1101/658419 — molecular biology — Posted on 2019-06-04

2803 High Dimensional Mediation Analysis with Applications to Causal Gene Identification

Zhang, Q.

10.1101/497826 — bioinformatics — Posted on 2019-06-04

2804 Benchmarking algorithms for gene regulatory network inference from single-cell transcriptomic data

Pratapa, A.; Jalihal, A.; Law, J. N.; Bharadwaj, A.; Murali, T. M.

10.1101/642926 — bioinformatics — Posted on 2019-06-04

2805 Adaptive and Innate Immune Cell Responses in Tendons and Lymph Nodes After Tendon Injury and Repair

Noah, A. C.; Li, T. M.; Martinez, L. M.; Wada, S.; Swanson, J. B.; Disser, N. P.; Sugg, K. B.; Rodeo, S. A.; Lu, T. T.; Mendias, C. L.

10.1101/658310 — physiology — Posted on 2019-06-04

2806 The effect of acute stress on the balance between goal-directed and habit networks in obsessive-compulsive disorder.

van der Straten, A.; van Leeuwen, W.; Denys, D.; van Marle, H.; van Wingen, G.

10.1101/598268 — neuroscience — Posted on 2019-06-04

2807 A macaque connectome for large-scale network simulations in TheVirtualBrain

Shen, K.; Bezgin, G.; Schirner, M.; Ritter, P.; Everling, S.; McIntosh, R.

10.1101/480905 — neuroscience — Posted on 2019-06-04

2808 Neurogenin regulates effectors of migratory neuron cell behaviors in Ciona

Gibboney, S.; Kim, K.; Razy-Krajka, F.; Wang, W.; Stolfi, A.

10.1101/654798 — developmental biology — Posted on 2019-06-04

2809 Agreement between two large pan-cancer CRISPR-Cas9 gene dependency datasets

Dempster, J. M.; Pacini, C.; Pantel, S.; Behan, F. M.; Green, T.; Krill-Burger, J.; Beaver, C. M.; Younger, S. T.; Zhivich, V.; Najgebauer, H.; Allen, F.; Goncalves, E.; Shepherd, R.; Doench, J. G.; Yusa, K.; Vazquez, F.; Parts, L.; Boehm, J. S.; Golub, T. R.; Hahn, W. C.; Root, D. E.; Garnett, M. J.; Iorio, F.; Tsherniak, A.

10.1101/604447 — cancer biology — Posted on 2019-06-04

2810 Gas-chromatography coupled mass spectrometry for rapid and sensitive quantitation of glucose and glucose phosphates derived from glycogen

Young, L. E.; Brizzee, C. O.; Macedo, J. K. A.; Gentry, M. S.; Sun, R. C.

10.1101/645556 — biochemistry — Posted on 2019-06-04

2811 A cytomegalovirus immunevasin triggers integrated stress response-dependent reorganization of the endoplasmic reticulum.

Zhang, H.; Read, C.; Nguyen, C. C.; Siddiquey, M. N. A.; Shang, C.; Hall, C. M.; von Einem, J.; Kamil, J. P.

10.1101/641068 — microbiology — Posted on 2019-06-04

2812 Machine learning to predict microbial community functions: An analysis of dissolved organic carbon from litter decomposition.

Thompson, J.; Johansen, R.; Dunbar, J.; Munsky, B.

10.1101/599704 — bioinformatics — Posted on 2019-06-04

2813 A Probabilistic Programming Approach to Protein Structure Superposition

Sanz Moreta, L.; Al-Sibahi, A. S. S.; Hamelryck, T.; Theobald, D.; Rommes, B. N.; Bullock, W.; Manoukian, A.

10.1101/575431 — bioinformatics — Posted on 2019-06-04

2814 Recombinant rotaviruses rescued by reverse genetics reveal the role of NSP5 hyperphosphorylation in the assembly of viral factories

Papa, G.; Venditti, L.; Arnoldi, F.; Schraner, E. M.; Potgieter, C.; Borodavka, A.; Eichwald, C.; Burrone, O. R.

10.1101/660217 — microbiology — Posted on 2019-06-04

2815 Summary statistic analyses can mistake confounding bias for heritability

Holmes, J. B.; Speed, D.; Balding, D. J.

10.1101/532069 — genetics — Posted on 2019-06-04

2816 A “Human-in-the-Loop” Approach for Semi-automated Image Restoration in Electron Microscopy

Roels, J.; Vernaillen, F.; Kremer, A.; Goncalves, A.; Aelterman, J.; Luong, H. Q.; Goossens, B.; Philips, W.; Lippens, S.; Saeys, Y.

10.1101/644146 — bioinformatics — Posted on 2019-06-04

2817 Grant Reviewer Perceptions of Panel Discussion in Face-to-Face and Virtual Formats: Lessons from Team Science?

Gallo, S. A.; Schmaling, K. B.; Thompson, L. A.; Glisson, S. R.

10.1101/586685 — scientific communication and education — Posted on 2019-06-04

2818 Effectiveness and selectivity of a heroin conjugate vaccine to attenuate heroin, 6-acetylmorphine, and morphine antinociception in rats: Comparison with naltrexone

Schwienteck, K. L.; Blake, S.; Bremer, P. T.; Poklis, J. L.; Townsend, E. A.; Negus, S. S.; Banks, M. L.

10.1101/577494 — pharmacology and toxicology — Posted on 2019-06-04

2819 Bagging Improves Reproducibility of Functional Parcellation

Nikolaidis, A.; Solon Heinsfeld, A.; Xu, T.; Bellec, P.; Vogelstein, J.; Milham, M.

10.1101/343392 — neuroscience — Posted on 2019-06-04

2820 mTORC1 IN THE ORBITOFRONTAL CORTEX PROMOTES HABITUAL ALCOHOL SEEKING

Morisot, N.; Berger, A.; Phamluong, K.; Laguesse, S.; Moffat, J.; Ron, D.

10.1101/564310 — neuroscience — Posted on 2019-06-04

2821 Cell shape and antibiotic resistance is maintained by the activity of multiple FtsW and RodA enzymes in Listeria monocytogenes

Rismondo, J.; Halbedel, S.; Grundling, A.

10.1101/589911 — microbiology — Posted on 2019-06-04

2822 Meta-Analysis of the Gene Expression Profiles of Aging Brain Reveals Consistent Increase in Heterogeneity

Isildak, U.; Somel, M.; Thornton, J.; Donertas, H. M.

10.1101/595249 — genomics — Posted on 2019-06-04

2823 On PRS for complex polygenic trait prediction

Zhao, B.; Zou, F.

10.1101/447797 — genetics — Posted on 2019-06-04

2824 The fitness cost of mismatch repair mutators in Saccharomyces cerevisiae: partitioning the mutational load

Galeota-Sprung, B.; Guindon, B.; Sniegowski, P.

10.1101/639765 — evolutionary biology — Posted on 2019-06-04

2825 Co-regulation and functional cooperativity of FOXM1 and RHNO1 bidirectional genes in ovarian cancer

Barger, C. J.; Branick, C.; Chee, L.; Albahrani, M.; Klinkebiel, D.; Drapkin, R.; Odunsi, K.; Zou, L.; Karpf, A.

10.1101/630442 — cancer biology — Posted on 2019-06-04

2826 Childhood urbanization affects prefrontal cortical responses to trait anxiety and interacts with polygenic risk for depression

Zhang, X.; Yan, H.; Yu, H.; Zhao, X.; Shah, S.; Dong, Z.; Yang, G.; Zhang, X.; Chen, Q.; Li, J.; Jiang, S.; Muse, T.; Liao, J.; Zhang, Y.; Yue, W.; Weinberger, D. R.; Zhang, D.; Tan, H. Y.

10.1101/246876 — neuroscience — Posted on 2019-06-04

2827 Integrating multiple data sources to fit matrix population models for interacting species

Barraquand, F.; Gimenez, O.

10.1101/594986 — ecology — Posted on 2019-06-04

2828 Participation and Motivations of Grant Peer Reviewers: A Comprehensive Survey of the Biomedical Research Community

Gallo, S. A.; Thompson, L. A.; Schmaling, K. B.; Glisson, S. R.

10.1101/479816 — scientific communication and education — Posted on 2019-06-04

2829 State-Transition Analysis of Time-Sequential Gene Expression Identifies Critical Points That Predict Leukemia Development

Rockne, R. C.; Branciamore, S.; Qi, J.; Frankhouser, D.; O'Meally, D.; Hua, W.-K.; Cook, G. J.; Zhang, L.; Carnahan, E.; Marom, A.; Wu, H.; Maestrini, D.; Wu, X.; Yuan, Y.-C.; Liu, Z.; Wang, L. D.; Forman, S.; Carlesso, N.; Kuo, Y.-H.; Marcucci, G.

10.1101/238923 — cancer biology — Posted on 2019-06-04

2830 Pseudo-chromosome length genome assembly of a double haploid ‘Bartlett’ pear (Pyrus communis L.)

Linsmith, G.; Rombauts, S.; Montanari, S.; Deng, C. H.; Celton, J.-M.; Guerif, P.; Liu, C.; Lohaus, R.; Zurn, J. D.; Cestaro, A.; Bassil, N. V.; Bakker, L. V.; Schijlen, E.; Gardiner, S. E.; Lespinasse, Y.; Durel, C.-E.; Velasco, R.; Neale, D.; Chagne, D.; Van de Peer, Y.; Troggio, M.; Bianco, L.

10.1101/643916 — bioinformatics — Posted on 2019-06-04

2831 VIEW-MOD: A Versatile Illumination Engine With a Modular Optical Design for Fluorescence Microscopy

Liu, B.; Hobson, C. M.; Pimenta, F. M.; Nelsen, E.; Hsiao, J.; O'Brien, E. T.; Falvo, M. R.; Hahn, K. M.; Superfine, R.

10.1101/660332 — bioengineering — Posted on 2019-06-04

2832 Bioinformatic Methods and Bridging of Assay Results for Reliable Tumor Mutational Burden Assessment in Non-Small Cell Lung Cancer

Chang, H.; Sasson, A.; Srinivasan, S.; Golhar, R.; Greenawalt, D. M.; Geese, W. J.; Green, G.; Zerba, K.; Kirov, S.; Szustakowski, J. D.

10.1101/626143 — bioinformatics — Posted on 2019-06-04

2833 Photoreceptor inputs to pupil control

Spitschan, M.

10.1101/624759 — neuroscience — Posted on 2019-06-04

2834 Inhibition of a Selective SWI/SNF Function Synergizes with ATR Inhibitors in Cancer Cell Killing

Chory, E. J.; Kirkland, J. G.; Chang, C.-y.; D'Andrea, V.; Gourisankar, S.; Dykhuizen, E. J.; Crabtree, G. J.

10.1101/660456 — cancer biology — Posted on 2019-06-04

2835 Time-varying nodal measures with temporal community structure: a cautionary note to avoid misquantification

Thompson, W. H.; Kastrati, G.; Finc, K.; Wright, J.; Shine, J. M.; Poldrack, R. A.

10.1101/659508 — neuroscience — Posted on 2019-06-04

2836 Efficient Long-Distance Transport in Upper Fluid of Bacterial Swarms

Feng, J.; Zhang, Z.; Wen, X.; Xue, J.; He, Y.

10.1101/657353 — microbiology — Posted on 2019-06-04

2837 On a Unifying ‘Reverse’ Regression for Robust Association Studies and Allele Frequency Estimation with Related Individuals

Zhang, L.; Sun, L.

10.1101/470328 — genetics — Posted on 2019-06-04

2838 Regeneration is a partial redeployment of the embryonic gene network

Warner, J. F.; Amiel, A. R.; Johnston, H.; Röttinger, E.

10.1101/658930 — developmental biology — Posted on 2019-06-04

2839 Elucidating the Influence of Linker Histone Isoforms on Chromatosome Dynamics and Energetics

Woods, D. C.; Weresczczynski, J.

10.1101/660076 — biophysics — Posted on 2019-06-04

2840 M1 disruption delays motor processes but not deliberation about action choices

Derosiere, G.; Thura, D.; Cisek, P.; Duque, J.

10.1101/501205 — neuroscience — Posted on 2019-06-04

2841 Three-dimensional analysis of β-cell proliferation by a novel mouse model

Tokumoto, S.; Yabe, D.; Tatsuoka, H.; Usui, R.; Fauzi, M.; Botagarova, A.; Goto, H.; Herrera, P. L.; Ogura, M.; Inagaki, N.

10.1101/659904 — cell biology — Posted on 2019-06-04

2842 A robust metatranscriptomic technology for population-scale studies of diet, gut microbiome, and human health

Hatch, A.; Horne, J.; Toma, R.; Twibell, B. L.; Somerville, K. M.; Pelle, B.; Canfield, K. P.; Genkin, M.; Banavar, G. S.; Perlina, A.; Messier, H.; Klitgord, N.; Vuyisich, M.

10.1101/659615 — systems biology — Posted on 2019-06-04

2843 Revising the scanning plan for continued visual exploration: the neurophysiology of refixation-related behavior

Nikolaev, A. R.; Giannini, M.; Meghanathan, R. N.; van Leeuwen, C.

10.1101/660308 — neuroscience — Posted on 2019-06-04

2844 Bioorthogonal antigens allow the unbiased study of antigen processing and presentation

Araman, C.; Pieper-Pournara, L.; van Leeuwen, T.; Kampstra, A. S. B.; Bakkum, T.; Marqvorsen, M. H. S.; Nascimento, C.; van der Wulp, W.; Groenewold, M. G. J. M.; Camps, M. G. M.; Overkleeft, H. S.; Ossendorp, F.; Toes, R.; van Kasteren, S. I.

10.1101/439323 — immunology — Posted on 2019-06-04

2845 Development of Coupling Controlled Polymerizations by Adapter-ligation in Mate-pair Sequencing for Detection of Various Genomic Variants in One Single Assay

Dong, Z.; Zhao, X.; Li, Q.; Yang, Z.; Xi, Y.; Alexeev, A.; Shen, H.; Wang, O.; Ruan, J.; Ren, H.; Wei, H.; Qi, X.; Li, J.; Zhu, X.; Zhang, Y.; Peng, D.; Kong, X.; Kirkconnell, K.; Alferov, O.; Giles, S.; Yamtich, J.; Kermani, B. G.; Dong, C.; Liu, P.; Mi, Z.; Zhang, W.; Xu, X.; Drmanac, R.; Choy, K. W.; Jiang, Y.

10.1101/400689 — genomics — Posted on 2019-06-04

2846 Open Humans: A platform for participant-centered research and personal data exploration

Greshake Tzovaras, B.; Angrist, M.; Arvai, K.; Dulaney, M.; Estrada-Galinanes, V.; Gunderson, B.; Head, T.; Lewis, D.; Nov, O.; Shaer, O.; Tzovara, A.; Bobe, J.; Price Ball, M.

10.1101/469189 — bioinformatics — Posted on 2019-06-04

2847 Termination of pre-mRNA splicing requires that the ATPase and RNA unwindase Prp43 acts on the catalytic snRNA U6

Toroney, R.; Nielsen, K. H.; Staley, J. P.

10.1101/659029 — molecular biology — Posted on 2019-06-04

2848 Eco-evolutionary spatial dynamics of non-linear social dilemmas

Gokhale, C. S.; Park, H. J.

10.1101/660266 — evolutionary biology — Posted on 2019-06-04

2849 Quantitative single-cell live imaging links HES5 dynamics with cell-state and fate in murine neurogenesis

Manning, C. S.; Biga, V.; Boyd, J.; Kursawe, J.; Ymisson, B.; Spiller, D. G.; Sanderson, C. M.; Galla, T.; Rattray, M.; Papalopulu, N.

10.1101/373407 — developmental biology — Posted on 2019-06-04

2850 Computational design and interpretation of live-cell, single-RNA translation experiments

Aguilera, L.; Raymond, W.; Fox, Z. R.; May, M. P.; Djokic, E.; Morisaki, T.; Stasevich, T. J.; Munsky, B.

10.1101/659987 — systems biology — Posted on 2019-06-04

2851 Chromatinization of Escherichia coli with archaeal histones

Rojec, M.; Hocher, A.; Merkenschlager, M.; Warnecke, T.

10.1101/660035 — systems biology — Posted on 2019-06-04

2852 A DNA-based synthetic apoptosome

Rosier, B.; Markvoort, B.; Gumi-Audenis, B.; Roodhuizen, J.; den Hamer, A.; Brunsveld, L.; de Greef, T.

10.1101/660183 — synthetic biology — Posted on 2019-06-04

2853 IQSEC3 Mediates Npas4-dependent GABAergic Synaptic Transmission and Depressive-like Behavior

Kim, S.; Park, D.; Lee, D.; Hong, S.; Yang, E.; Jeon, J.; Mori, T.; Kim, H.; Kim, S.-J.; Tabuchi, K.; Kim, J.; Kim, H.; Cheong, E.; Um, J. W.; Ko, J.

10.1101/659805 — neuroscience — Posted on 2019-06-04

2854 Characteristics of University Students Supported by Counseling Services: Analysis of psychological tests and pulse rate variability

Adachi, Y.; Yoshikawa, H.; Iwasa, K.; Yokoyama, S.

10.1101/658740 — neuroscience — Posted on 2019-06-04

2855 Single cell RNA-sequencing reveals cellular heterogeneity and trajectories of lineage specification during murine embryonic limb development

Kelly, N. H.; Huynh, N. P.; Guilak, F.

10.1101/659656 — molecular biology — Posted on 2019-06-04

2856 DO THESE CRAYFISH MAKE ME LOOK FAT? BODY CONDITION CORRELATES TO PREY ABUNDANCE IN THREE HELLBENDER (CRYPTOBRANCHUS ALLEGANIENSIS) POPULATIONS

Hecht, K. A.; Nickerson, M. A.; Freake, M.; Colclough, P.; Stofer, K.

10.1101/659441 — ecology — Posted on 2019-06-04

2857 GATA2 controls lymphatic endothelial cell junctional integrity and lymphovenous valve morphogenesis through miR-126

Mahamud, M. R.; Geng, X.; Ho, Y.-C.; Cha, B.; Kim, Y.; Ma, J.; Chen, L.; Myers, G.; Camper, S.; Mustacich, D. J.; Witte, M.; Choi, D.; Hong, Y.-K.; Chen, H.; Varshney, G.; Engel, J.; Wang, S.; Kim, T. H.; Lim, K.-C.; Srinivasan, S.

10.1101/660068 — developmental biology — Posted on 2019-06-04

2858 Integration of genomic variation and phenotypic data using HmtPhenome

Preste, R.; Attimonelli, M.

10.1101/660282 — bioinformatics — Posted on 2019-06-04

2859 Transient transcriptome sequencing: computational pipeline to quantify genome-wide RNA kinetic parameters and transcriptional enhancer activity

Villamil, G.; Wachutka, L.; Cramer, P.; Gagneur, J.; Schwalb, B.

10.1101/659912 — molecular biology — Posted on 2019-06-04

2860 Mps1 releases Mad1 from nuclear pores to ensure a robust mitotic checkpoint and accurate chromosome segregation

Osswald, M.; Cunha-Silva, S.; Goemann, J.; Barbosa, J.; Santos, L. M.; Resende, P.; Bange, T.; Sunkel, C.; Conde, C.

10.1101/659938 — cell biology — Posted on 2019-06-04

2861 Non-invasive recording from the human olfactory bulb

Iravani, B.; Arshamian, A.; Ohla, K.; Wilson, D. A.; Lundstrom, J. N.

10.1101/660050 — neuroscience — Posted on 2019-06-04

2862 Placenta microbiome diversity is associated with maternal pre-pregnancy obesity and placenta biogeography

Benny, P.; Al-Akwa, F.; Dirks, C.; Schlueter, R.; Wolfgruber, T.; Chern, I.; Hoops, S.; Knights, D.; Garmire, L.

10.1101/659797 — microbiology — Posted on 2019-06-04

2863 Recounting the FANTOM Cage Associated Transcriptome

Imada, E. L.; Sanchez, D. F.; Collado-Torres, L.; Wilks, C.; Matam, T.; Dinalankara, W.; Stupnikov, A.; Lobo, F. P.; Yip, C.-W.; Yasuzawa, K.; Kondo, N.; Itoh, M.; Suzuki, H.; Kasukawa, T.; Hon, C. C.; de Hoon, M.; Shin, J. W.; Carninci, P. W.; Jaffe, A. E.; Leek, J. E.; Favorov, A. V.; Franco, G. R.; Langmead, B. R.; Marchionni, L.

10.1101/659490 — genomics — Posted on 2019-06-04

2864 SweHLA: the high confidence HLA typing bio-resource drawn from 1 000 Swedish genomes

Nordin, J.; Ameur, A. R. S.; Gyllensten, U.; Lindblad-Toh, K.; Meadows, J. R. S.

10.1101/660241 — genetics — Posted on 2019-06-04

2865 Epigenetic regulation of a mouse PPARγ splicing variant, Pparγ1sv, during adipogenesis in 3T3-L1 cells

Takenaka, Y.; Nakano, T.; Ikeda, M.; Kakinuma, Y.; Inoue, I.

10.1101/647842 — cell biology — Posted on 2019-06-04

2866 Not just BLAST nt: WGS database joins the party

Marti, J. M.; Pena Garay, C.

10.1101/653592 — bioinformatics — Posted on 2019-06-04

2867 Inhibitory cell populations depend on age, sex, and prior experience across a neural network for Critical Period learning

Gogola, J. V.; Gores, E. O.; London, S. E.

10.1101/650051 — neuroscience — Posted on 2019-06-04

2868 Pilot Study of Metabolomic Clusters as State Markers of Major Depression and Outcomes to CBT Treatment

Bhattacharyya, S.; Dunlop, B. W.; Mahmoudiandehkordi, S.; Ahmed, A. T.; Louie, G.; Frye, M. A.; Weinshilboum, R. M.; Krishnan, R. R.; Rush, A. J.; Mayberg, H. S.; Craighead, W. E.; Kaddurah-Daouk, R.

10.1101/658906 — neuroscience — Posted on 2019-06-04

2869 Microbial community-level features linked to divergent carbon flows during early litter decomposition in a constant environment

Johansen, R.; Albright, M.; Lopez, D.; Gallegos-Graves, L. V.; Runde, A.; Mueller, R.; Washburne, A.; Yoshida, T.; Dunbar, J.

10.1101/659383 — microbiology — Posted on 2019-06-04

2870 TaAPO-A1, an ortholog of rice ABERRANT PANICLE ORGANIZATION 1, is associated with total spikelet number per spike in elite hexaploid winter wheat varieties (Triticum aestivum L.)

Muqaddasi, Q. H.; Brassac, J.; Koppolu, R.; Plieske, J.; Ganal, M. W.; Röder, M. S.

10.1101/659813 — genetics — Posted on 2019-06-04

2871 Semantic Fluency Predicts Six-Year Progression to Mild Cognitive Impairment in Middle-Aged Men

Gustavson, D. E.; Elman, J. A.; Panizzon, M. S.; Franz, C. E.; Zuber, J.; Sanderson-Cimino, M.; Reynolds, C. A.; Jacobson, K. C.; Xian, H.; Jak, A. J.; Toomey, R.; Lyons, M. J.; Kremen, W. A.

10.1101/659417 — genetics — Posted on 2019-06-04

2872 Phenotypic plasticity as an important mechanism of cave colonization and adaptation in Astyanax cavefish

Bilandzija, H.; Hollifield, B.; Steck, M.; Meng, G.; Ng, M.; Koch, A.; Gracan, R.; Cetkovic, H.; Porter, M.; Renner, K.; Jeffery, W. R.

10.1101/657460 — evolutionary biology — Posted on 2019-06-04

2873 Interactive Multiresolution Visualization of Cellular Network Processes

Ortega, O. O.; Lopez, C. F.

10.1101/659367 — systems biology — Posted on 2019-06-04

2874 Deciphering the metabolic capabilities of Bifidobacteria using genome-scale metabolic models

Raman, K.; Devika, N. T.

10.1101/659888 — systems biology — Posted on 2019-06-04

2875 No Evidence for Associations Between the Big Five Personality Traits and Variability in Brain Gray or White Matter

Avinun, R.; Israel, S.; Knodt, A. R.; Hariri, A. R.

10.1101/658567 — neuroscience — Posted on 2019-06-04

2876 Gravity highlights a dual role of the insula in internal models

Rousseau, C.; Barbiero, M.; Pozzo, T.; Papaxanthis, C.; White, O.

10.1101/659870 — neuroscience — Posted on 2019-06-04

2877 Chd1 regulates repair of promoter-proximal DNA breaks to sustain hypertranscription in embryonic stem cells

Bulut-Karslioglu, A.; Jin, H.; Guzman-Ayala, M.; Williamson, A. J.; Hejna, M.; Whetton, A. D.; Song, J. S.; Ramalho-Santos, M.

10.1101/659995 — molecular biology — Posted on 2019-06-04

2878 Isolation and characterization of toxic Cyanobacterial Communities distribution in Lake Tana, Amhara Regional state, Ethiopia

Admas, A.; Agida, A.; Melese, S.; Genetu, A.

10.1101/659748 — microbiology — Posted on 2019-06-04

2879 Evaluating the contribution of cell-type specific alternative splicing to variation in lipid levels

Gawronski, K. A. B.; Bone, W.; Park, Y.; Pashos, E.; Wang, X.; Yang, W.; Rader, D.; Musunuru, K.; Voight, B.; Brown, C.

10.1101/659326 — genetics — Posted on 2019-06-04

2880 Y-chromosome haplotypes of varying differentiation to the X are not associated with male fitness in common frogs

Veltsos, P.; Rodrigues, N.; Studer, T.; Ma, W.-J.; Sermier, R.; Leuenberger, J.; Perrin, N.

10.1101/659565 — evolutionary biology — Posted on 2019-06-04

2881 Normal mammary gland development after MMTV-Cre mediated conditional PAK4 gene depletion

Rabieifar, P.; Zhuang, T.; Costa, T. D.; Zhao, M.; Stromblad, S.

10.1101/658583 — developmental biology — Posted on 2019-06-04

2882 Gene-set enrichment with regularized regression

Fang, T.; Davydov, I.; Marbach, D.; Zhang, J. D.

10.1101/659920 — bioinformatics — Posted on 2019-06-04

2883 GSEA-InContext Explorer: An interactive visualization tool for putting gene set enrichment analysis results into biological context.

Powers, R. K.; Sun, A.; Costello, J.

10.1101/659847 — bioinformatics — Posted on 2019-06-04

2884 Identification of peptide coatings that enhance diffusive transport of nanoparticles through the tumor microenvironment

Mohanty, R.; Liu, X.; Kim, J. Y.; Peng, X.; Bhandari, S.; Leal, J.; Arasappan, D.; Wylie, D. C.; Dong, T.; Ghosh, D.

10.1101/659524 — bioengineering — Posted on 2019-06-04

2885 Designing viscoelastic mucin-based hydrogels

Joyner, K.; Song, D.; Hawkins, R.; Silcott, R.; Duncan, G.

10.1101/656801 — bioengineering — Posted on 2019-06-04

2886 Host carbon dioxide concentration is an independent stress for Cryptococcus neoformans that affects virulence and antifungal susceptibility

Krysan, D. J.; Zhai, B.; Beattie, S. R.; Misel, K. M.; Wellington, M.; Lin, X.

10.1101/659789 — microbiology — Posted on 2019-06-04

2887 Metabolism of fatty acids and ketone bodies for glioblastoma growth: Implications for Ketogenic Diet Therapy

Sperry, J.; Le Belle, J. E.; Condro, M. C.; Guo, L.; Kim, K. K. O.; Vanderveer-Harris, N.; Braas, D.; Pope, W. B.; Divakurani, A. S.; Lai, A.; Christofk, H.; Kornblum, H. I.

10.1101/659474 — cancer biology — Posted on 2019-06-04

2888 A mouse model of recurrent myocardial infarction reports diminished emergency hematopoiesis and cardiac inflammation

Cremer, S.; Schloss, M. J.; Vinegoni, C.; Zhang, S.; Rohde, D.; Feruglio, P. F.; Schmidt, S.; Wojtkiewicz, G.; Weissleder, R.; Swirski, F.; Nahrendorf, M.

10.1101/659359 — physiology — Posted on 2019-06-04

2889 Modulation of post-traumatic immune response using anti-IL-1 therapy for improved visual outcomes

Evans, L. P.; Woll, A. W.; Wu, S.; Todd, B. P.; Hehr, N. N.; Hedberg-Buenz, A.; Anderson, M. G.; Newell, E. A.; Ferguson, P. J.; Mahajan, V. B.; Harper, M. M.; Bassuk, A. G.

10.1101/659581 — neuroscience — Posted on 2019-06-04

2890 Experience- and sex-dependent intrinsic plasticity in the zebra finch auditory cortex during song memorization

Chen, A. N.; Meliza, C. D.

10.1101/658104 — neuroscience — Posted on 2019-06-04

2891 Dynamic pneumococcal genetic adaptations support bacterial growth and inflammation during coinfection with influenza

Smith, A. P.; Lane, L.; van Opijnen, T.; Woolard, S.; Carter, R.; Iverson, A.; Burnham, C.; Vogel, P.; Roeber, D.; Hochu, G.; Johnson, M.; McCullers, J.; Rosch, J.; Smith, A. M.

10.1101/659557 — microbiology — Posted on 2019-06-04

2892 Adaptive laboratory evolution of Escherichia coli under acid stress

Du, B.; Olson, C. A.; Sastry, A. V.; Fang, X.; Phaneuf, P. V.; Chen, K.; Wu, M.; Szubin, R.; Xu, S.; Gao, Y.; Hefner, Y.; Feist, A. M.; Palsson, B. O.

10.1101/659706 — microbiology — Posted on 2019-06-04

2893 Prochlorococcus rely on microbial interactions rather than on chlorotic resting stages to survive long-term stress

Roth-Rosenberg, D.; Aharonovich, D.; Luzzatto-Knaan, T.; Vogts, A.; Zoccarato, L.; Eigemann, F.; Nago, N.; Grossart, H.-P.; Voss, M.; Sher, D. J.

10.1101/657627 — microbiology — Posted on 2019-06-04

2894 Yeast growth responses to environmental perturbations are associated with rewiring of large epistatic networks

Zan, Y.; Carlborg, O.

10.1101/659730 — genetics — Posted on 2019-06-04

2895 Divide and Conquer: Real-time maximum likelihood fitting of multiple emitters for super-resolution localization microscopy

Li, L.; Xin, B.; Kuang, W.; Zhou, Z.; Huang, Z.-L.

10.1101/659631 — biophysics — Posted on 2019-06-04

2896 Prefix Block-Interchanges on Binary and Ternary Strings

Rahman, M. K.; Rahman, M. S.

10.1101/659664 — bioinformatics — Posted on 2019-06-04

2897 A combinatorial biomolecular strategy to identify peptides for improved transport across the sputum of cystic fibrosis patients and the underlying epithelia

Leal, J.; Liu, X.; Peng, X.; Mohanty, R.; Arasappan, D.; Wylie, D. C.; Schwartz, S. H.; Fullmer, J. J.; McWilliams, B. C.; Smyth, H. D.; Ghosh, D.

10.1101/659540 — bioengineering — Posted on 2019-06-04

2898 M13 phage display to identify a permeating peptide against hyperconcentrated mucin

Leal, J.; Dong, T.; Gao, F.; Soto, M.; Smyth, H. D.; Ghosh, D.

10.1101/659573 — bioengineering — Posted on 2019-06-04

2899 Vapor inhalation of cannabidiol (CBD) in rats

Javadi-Paydar, M.; Creehan, K. M.; Kerr, T. M.; Taffe, M. A.

10.1101/659250 — pharmacology and toxicology — Posted on 2019-06-04

2900 Amplifying the Neural Power Spectrum

Doyle, J. A.; Toussaint, P.-J.; Evans, A. C.

10.1101/659268 — neuroscience — Posted on 2019-06-04

2901 THE FREQUENCY OF CORTICAL MICROSTIMULATION SHAPES ARTIFICIAL TOUCH

Callier, T.; Brantly, N. W.; Caravelli, A.; Bensmaia, S. J.

10.1101/659516 — neuroscience — Posted on 2019-06-04

2902 Genomic sequencing of the aquatic Fusarium spp. QHM and BWC1 and their potential application in environmental protection

Zhu, H.; Zhu, L.; Ding, N.

10.1101/659755 — genomics — Posted on 2019-06-04

2903 Optimal markers for the identification of Colletotrichum species

dos Santos Vieira, W. A.; Alves bezerra, P.; da Silva, A. C.; Silva Veloso, J.; Paz Saraiva Camara, M.; Patrick Doyle, V.

10.1101/659177 — evolutionary biology — Posted on 2019-06-04

2904 Rainfall and other meteorological factors as drivers of urban transmission of leptospirosis

Costa, F.; Cunha, M.; Ribeiro, G. S.; Carvalho, M. S.; Reis, R. B.; Nery, N.; Pischel, L.; Gouveia, E.; Santos, A.; Queiroz, A.; Wunder, E.; Reis, M.; Diggle, P.; Ko, A.

10.1101/658872 — epidemiology — Posted on 2019-06-04

2905 Molecular pathway analysis indicates a distinct metabolic and immune phenotype in women with right-sided colon cancer

Johnson, C.; Sun, Y.; Mironova, V.; Chen, Y.; Lundh, E. P. F.; Zhang, Q.; Cai, Y.; Vasiliou, V.; Zhang, Y.; Garcia-Milian, R.; Khan, S. A.

10.1101/659151 — cell biology — Posted on 2019-06-04

2906 Fungal Feature Tracker (FFT): A tool for quantitatively characterizing the morphology and growth of filamentous fungi

Vidal-Diez de Ulzurrun, G.; Huang, T.-Y.; Chang, C.-W.; Lin, H.-C.; Hsueh, Y.-P.

10.1101/659672 — cell biology — Posted on 2019-06-04

2907 Intracellular XBP1-IL-24 axis dismantles cytotoxic unfolded protein response in the liver

Wang, J.; Hu, B.; Zhao, Z.; Zhang, H.; Zhang, H.; Zhao, Z.; Ma, X.; Shen, B.; Sun, B.; Huang, X.; Hou, J.; Xia, Q.

10.1101/658666 — cell biology — Posted on 2019-06-04

2908 Biophysical principles of choanoflagellate self-organization

Larson, B. T.; Ruiz-Herrero, T.; Lee, S.; Kumar, S.; Mahadevan, L.; King, N.

10.1101/659698 — biophysics — Posted on 2019-06-04

2909 Deep-learning-based cell composition analysis from tissue expression profiles.

Menden, K.; Marouf, M.; Dalmia, A.; Heutink, P.; Bonn, S.

10.1101/659227 — bioinformatics — Posted on 2019-06-04

2910 Bacterial Controller Aided Wound Healing: A Case Study in Dynamical Population Controller Design

Green, L. N.; Hu, C. Y.; Ren, X. Y.; Murray, R. M.

10.1101/659714 — synthetic biology — Posted on 2019-06-04

2911 Multimodal parameters of brain structure and function related to sex differences in cognitive performance.

Gur, R. C.; Moore, T. M.; Rosen, A. F. G.; Ruparel, K.; Satterthwaite, T. D.; Roalf, D. R.; Gennatas, E. D.; Bilker, W. B.; Shinohara, R. T.; Port, A.; Elliott, M. A.; Verma, R.; Davatzikos, C.; Wolf, D. H.; Detre, J. A.; Gur, R. E.

10.1101/659193 — neuroscience — Posted on 2019-06-04

2912 Recombinant rotaviruses rescued by reverse genetics reveal the role of NSP5 hyperphosphorylation in the assembly of viral factories

Papa, G.; Venditti, L.; Arnoldi, F.; Schraner, E. M.; Potgieter, C.; Borodavka, A.; Eichwald, C.; Burrone, O. R.

10.1101/660217 — microbiology — Posted on 2019-06-04

2913 Identifying Women at Risk for Polycystic Ovary Syndrome Using a Mobile Health Application

Rodriguez, E. M.; Thomas, D.; Druet, A.; Wheeler, M. V.; Lane, K.; Mahalingaiah, S.

10.1101/659318 — bioinformatics — Posted on 2019-06-04

2914 The evolution of contact prediction: Evidence that contact selection in statistical contact prediction is changing

Chonofsky, M.; de Oliveira, S. H. P.; Krawczyk, K.; Deane, C.

10.1101/660191 — bioinformatics — Posted on 2019-06-04

2915 Lower dormancy with rapid germination is an important strategy for seeds in an arid zone with unpredictable rainfall

Duncan, C.; Schultz, N.; Lewandrowski, W.; Good, M.; Cook, S.

10.1101/660159 — plant biology — Posted on 2019-06-04

2916 Cost utility analysis of end stage renal disease treatment in Ministry of Health dialysis centres, Malaysia: hemodialysis versus continuous ambulatory peritoneal dialysis

Surendra, N. K.; Abdul Manaf, M. R.; Hooi, L. S.; Bavanandan, S.; Mohamad Nor, F. S.; Firdaus Khan, S. S.; Ong Loke Meng, O. L. M.; Abdul Gafor, A. H.

10.1101/660167 — epidemiology — Posted on 2019-06-04

2917 Hsa-mir-210 as a novel signature predicts survival in lung squamous cell carcinoma using bioinformatics analysis

Liu, Y.; Chen, Y.; Li, L.-L.; Wang, S.-N.; Xia, S.

10.1101/660175 — bioinformatics — Posted on 2019-06-04

2918 Nonlinear Dispersive Cell Model for Microdosimetry of Nanosecond Pulsed Electric Fields

Guo, F.; Zhang, L.; Liu, X.

10.1101/660134 — bioengineering — Posted on 2019-06-04

2919 Importance of the Landlocked Pond Smelt Hypomesus nipponensis as a food resource of the Little Tern Sternula albifrons on inland Andong Lake of Korea: A video image analysis

Shin, D.-M.; Han, J.-H.

10.1101/660142 — ecology — Posted on 2019-06-04

2920 Photon-counting cine-cardiac CT in the mouse

Clark, D. P.; Holbrook, M.; Lee, C.-L.; Badea, C. T.

10.1101/660100 — bioengineering — Posted on 2019-06-04

2921 A generative learning model for saccade adaptation

Cassanello, C.; Ostendorf, F.; Rolfs, M.

10.1101/492512 — neuroscience — Posted on 2019-06-04

2922 Evidence for extensive anaerobic dechlorination and transformation of the pesticide chlordecone (C10Cl10O) in soil from Guadeloupe

Lomheim, L.; Laquitaine, L.; Rambinaising, S.; Flick, R.; Starostine, A.; Jean-Marius, C.; Gaspard, S.; Edwards, E. A.

10.1101/650200 — microbiology — Posted on 2019-06-04

2923 Dock5 is a new regulator of microtubule dynamic instability through GSK3β inhibition in osteoclasts

Guimbal, S.; Guerit, D.; Chardon, M.; Blangy, A.; Vives, V.

10.1101/653055 — cell biology — Posted on 2019-06-04

2924 Impact of in vivo protein folding probability on local fitness landscapes

Faber, M. S.; Wrenbeck, E. E.; Azouz, L. R.; Steiner, P. J.; Whitehead, T. A.

10.1101/590398 — evolutionary biology — Posted on 2019-06-04

2925 Keeping salamanders off the streets: An assessment of one of the first amphibian road tunnels in the United States 30 years after installation

Hedrick, B.; Vander Linden, A.; Watt, E.; O'Roark, P.; Cordero, S.; Cox, S. L.; Sutherland, C.

10.1101/569426 — ecology — Posted on 2019-06-04

2926 The Spatio-Temporal Control of Zygotic Genome Activation

Gentsch, G.; Owens, N. D. L.; Smith, J. C.

10.1101/488056 — developmental biology — Posted on 2019-06-04

2927 CAMITAX: Taxon labels for microbial genomes

Bremges, A.; Fritz, A.; McHardy, A. C.

10.1101/532473 — bioinformatics — Posted on 2019-06-04

2928 Spatially resolved dendritic integration: Towards a functional classification of neurons

Kirch, C.; Gollo, L. L.

10.1101/657403 — neuroscience — Posted on 2019-06-04

2929 Electric-induced reversal of morphogenesis in Hydra

Braun, E.; Ori, H.

10.1101/600395 — biophysics — Posted on 2019-06-04

2930 Minimum epistasis interpolation for sequence-function relationships

Zhou, J.; McCandlish, D. M.

10.1101/657841 — bioinformatics — Posted on 2019-06-04

2931 High Spatial Resolution Ambient Ionization Mass Spectrometry Imaging Using Microscopy Image Fusion

Chen, C.-L.; Lin, L.-E.; Huang, Y.-C.; Chung, H.-H.; Chen, K.-C.; Peng, Y.-J.; Lin, C.-W.; Ding, S.-T.; Shen, T.-L.; Hsu, C.-C.

10.1101/657494 — bioinformatics — Posted on 2019-06-04

2932 Neuron Geometry Underlies a Universal Local Architecture in Neuronal Networks

Gal, E.; Perin, R.; Markram, H.; London, M.; Segev, I.

10.1101/656058 — neuroscience — Posted on 2019-06-04

2933 Cheater-mediated evolution shifts phenotypic heterogeneity in Bacillus subtilis biofilms

Martin, M.; Dragos, A.; Otto, S. B.; Schafer, D.; Brix, S.; Maroti, G.; Kovacs, A. T.

10.1101/494716 — microbiology — Posted on 2019-06-04

2934 Microstructural plasticity in the bilingual brain

Luo, D.; Kwok, V. P. Y.; Li, P.; Liu, Q.; Li, W.; Yang, Y.; Zhou, K.; Xu, M.; Gao, J. H.; Tan, L. H.

10.1101/657932 — neuroscience — Posted on 2019-06-04

2935 Insoluble Aβ overexpression in an App knock-in mouse model alters microstructure and gamma oscillations in the prefrontal cortex, causing anxiety-related behaviours

Pervolaraki, E.; Hall, S. P.; Foresteire, D.; Saito, T.; Saido, T.; Whittington, M. A.; Lever, C.; Dachtler, J.

10.1101/494443 — neuroscience — Posted on 2019-06-04

2936 The cohesin loader NIPBL interacts with pre-ribosomal RNA and treacle to regulate ribosomal RNA synthesis

Kong, X.; Chen, Y.-Y.; Lin, J.; Flowers, E.; Van Nostrand, E.; Blue, S.; Chau, J.; Ma, C. I.-H.; Mohr, I.; Thai, R.; Yao, C.; Ball, A.; Chien, R.; Kawauchi, S.; Santos, R.; Calof, A.; Lander, A.; Shi, Y.; Okuwaki, M.; Yeo, G. W.; Yokomori, K.

10.1101/658492 — molecular biology — Posted on 2019-06-04

2937 Infection of the Biomphalaria glabrata vector snail by Schistosoma mansoni parasites drives snail microbiota dysbiosis

Portet, A.; Toulza, E.; Lokmer, A.; Huot, C.; Duval, D.; Galinier, R.; Gourbal, B.

10.1101/386623 — microbiology — Posted on 2019-06-04

2938 Bayesian network analysis complements Mendelian randomization approaches for exploratory analysis of causal relationships in complex data

Howey, R.; Shin, S.-Y.; Relton, C.; Davey Smith, G.; Cordell, H. J.

10.1101/639864 — genetics — Posted on 2019-06-04

2939 Development and External Validation of the Acute COPD Exacerbation Prediction Tool (ACCEPT)

Adibi, A.; Sin, D. D.; Safari, A.; Johnson, K. M.; Aaron, S.; FitzGerald, J. M.; Sadatsafavi, M.

10.1101/651901 — epidemiology — Posted on 2019-06-04

2940 SEQdata-BEACON: a comprehensive database of sequencing performance and statistical tools for performance evaluation and yield simulation in BGISEQ-500

Liu, C.; Zhou, R.; Zhou, Y.; Lu, A.; Huang, B.; Liu, L.; Chen, L.; Luo, B.; Huang, J.; Tian, Z.

10.1101/652347 — bioinformatics — Posted on 2019-06-04

2941 Using Flow Cytometry and Multistage Machine Learning to Discover Label-Free Signatures of Algal Lipid Accumulation

Tanhaemami, M.; Alizadeh, E.; Sanders, C.; Marrone, B.; Munsky, B.

10.1101/497834 — systems biology — Posted on 2019-06-04

2942 Unveiling two new trichome-specific promoters of interest for metabolic engineering in Nicotiana tabacum

Pottier, M.; Laterre, R.; Van Wessem, A.; M. Ramirez, A.; Herman, X.; Boutry, M.; Hachez, C.

10.1101/620021 — plant biology — Posted on 2019-06-04

2943 A delay in sampling information from temporally autocorrelated visual stimuli

Callahan-Flintoft, C.; Holcombe, A. O.; Wyble, B.

10.1101/656850 — neuroscience — Posted on 2019-06-04

2944 Mapping the human subcortical auditory system using histology, post mortem MRI and in vivo MRI at 7T

Sitek, K. R.; Gulban, O. F.; Calabrese, E.; Johnson, G. A.; Lage-Castellanos, A.; Moerel, M.; Ghosh, S. S.; de Martino, F.

10.1101/568139 — neuroscience — Posted on 2019-06-04

2945 A live-cell imaging system for visualizing the transport of Marburg virus nucleocapsid-like structures

Takamatsu, Y.; Noda, T.; Becker, S.

10.1101/658419 — molecular biology — Posted on 2019-06-04

2946 Root development is maintained by specific bacteria-bacteria interactions within a complex microbiome

Finkel, O. M.; Salas-Gonzalez, I.; Castrillo, G.; Law, T. F.; Conway, J. M.; Lima Teixeira, P. J. P.; Jones, C. D.; Dangl, J. L.

10.1101/645655 — microbiology — Posted on 2019-06-04

2947 An inordinate fondness for species with intermediate dispersal abilities

Ashby, B.; Shaw, A.; Kokko, H.

10.1101/644872 — evolutionary biology — Posted on 2019-06-04

2948 Causal relationships between obesity and the leading causes of death in women and men

Censin, J. C.; Peters, S. A.; Bovijn, J.; Ferreira, T.; Pulit, S. L.; Magi, R.; Mahajan, A.; Holmes, M. V.; Lindgren, C. M.

10.1101/523217 — epidemiology — Posted on 2019-06-04

2949 Axial variation of deoxyhemoglobin density as a source of BOLD low-frequency time lag structure.

Aso, T.; Urayama, S.; Fukuyama, H.; Murai, T.

10.1101/658377 — biophysics — Posted on 2019-06-04

2950 Modelling Gene-Protein-Reaction Associations on an FPGA

Coggins, M.

10.1101/658195 — bioinformatics — Posted on 2019-06-04

2951 Genotype and dose-frequency may critically determine the therapeutic efficacy of chronic oxytocin treatment in humans

Kou, J.; Zhang, Y.; Zhou, F.; Sindermann, C.; Montag, C.; Becker, B.; Kendrick, K.

10.1101/493387 — neuroscience — Posted on 2019-06-04

2952 Noninvasive prenatal diagnosis for Hemophilia A by haplotype-based approach using cell-free fetal DNA in maternal plasma

Chen, C.; Sun, J.; Yang, Y.; Jiang, L.; Guo, F.; Zhu, Y.; Li, D.; Wu, R.; Lu, R.; Zhao, M.; Chen, F.; Ni, P.; He, Z.; Peng, Z.

10.1101/563429 — molecular biology — Posted on 2019-06-04

2953 The effects of soil phosphorous content on microbiota are driven by the plant phosphate starvation response

Finkel, O. M.; Salas-Gonzalez, I.; Castrillo, G.; Spaepen, S.; Law, T. F.; Lima Teixeira, P. J. P.; Jones, C.; Dangl, J. L.

10.1101/608133 — microbiology — Posted on 2019-06-04

2954 Targeted Nanopore Sequencing with Cas9 for studies of methylation, structural variants and mutations

Gilpatrick, T.; Lee, I.; Graham, J. E.; Raimondeau, E.; Bowen, R.; Heron, A.; Sedlazeck, F.; Timp, W.

10.1101/604173 — genomics — Posted on 2019-06-04

2955 Cross-species blastocyst chimerism between nonhuman primates using iPSCs

Roodgar, M.; Suchy, F. P.; Bajpai, V. K.; Bhadury, J.; Vilches-Moure, J. G.; Oikonomopoulos, A.; Wu, J. C.; Mankowski, J. L.; Loh, K. M.; Nakauchi, H.; VandeVoort, C.; Snyder, M. P.

10.1101/635250 — developmental biology — Posted on 2019-06-04

2956 Comparative Analysis of Electrostatic Models for Ligand Docking

Sartori, G. R.; Nascimento, A. S.

10.1101/577643 — biophysics — Posted on 2019-06-04

2957 Knowledge and attitudes among life scientists towards reproducibility within journal articles.

Kaimaklioti Samota, E.; P. Davey, R.

10.1101/581033 — scientific communication and education — Posted on 2019-06-04

2958 ezTrack: An open-source video analysis pipeline for the investigation of animal behavior

Pennington, Z. T.; Dong, Z.; Bowler, R.; Feng, Y.; Vetere, L. M.; Shuman, T.; Cai, D. J.

10.1101/592592 — neuroscience — Posted on 2019-06-04

2959 variant2literature: full text literature search for genetic variants

Lin, Y.-H.; Lu, Y.-C.; Chen, T.-F.; Hsu, J. S.; Lee, K.-H.; Cheng, Y.-W.; Chen, Y.-C.; Fan, J.-S.; Tu, C.-T.; Hsu, C.-M.; Chou, C.-C.; Chen, P.-L.; Tu, Y.-C. E.; Chen, C.-Y.

10.1101/583450 — genetics — Posted on 2019-06-04

2960 Thermal regimes, but not mean temperatures, drive patterns of rapid climate adaptation at a continent-scale: evidence from the introduced European earwig across North America

Tourneur, J.-C.; Meunier, J.

10.1101/550319 — evolutionary biology — Posted on 2019-06-04

2961 Consciousness as a Concrete Physical Phenomenon

Jylkka, J.; Railo, H.

10.1101/557561 — neuroscience — Posted on 2019-06-04

2962 Biosynthesis of Circular RNA ciRS-7/CDR1as Is Mediated by Mammalian-Wide Interspersed Repeats (MIRs)

Yoshimoto, R.; Rahimi, K.; Hansen, T.; Kjems, J.; Mayeda, A.

10.1101/411231 — molecular biology — Posted on 2019-06-04

2963 Direct RNA nanopore sequencing of full-length coronavirus genomes provides novel insights into structural variants and enables modification analysis

Viehweger, A.; Krautwurst, S.; Lamkiewicz, K.; Madhugiri, R.; Ziebuhr, J.; Hölzer, M.; Marz, M.

10.1101/483693 — genomics — Posted on 2019-06-04

2964 Cell and tissue morphology determine actin-dependent nuclear migration mechanisms in neuroepithelia

Yanakieva, I.; Erzberger, A.; Matejcic, M.; Modes, C. D.; Norden, C.

10.1101/536698 — cell biology — Posted on 2019-06-04

2965 Parent and offspring genotypes influence gene expression in early life

Newhouse, D.; Barcelo-Serra, M.; Tuttle, E.; Gonser, R.; Balakrishnan, C.

10.1101/488684 — genomics — Posted on 2019-06-04

2966 Supporting global biodiversity assessment through high-resolution macroecological modelling: Methodological underpinnings of the BILBI framework

Hoskins, A. J.; Harwood, T. D.; Ware, C.; Williams, K. J.; Perry, J. J.; Ota, N.; Croft, J. R.; Yeates, D. K.; Jetz, W.; Golebiewski, M.; Purvis, A.; Robertson, T.; Ferrier, S.

10.1101/309377 — ecology — Posted on 2019-06-04

2967 Activated Ras/JNK driven Dilp8 in imaginal discs adversely affects organismal homeostasis during early pupal stage in Drosophila, a new checkpoint for development

Ray, M.; Lakhotia, S. C.

10.1101/049882 — developmental biology — Posted on 2019-06-04

2968 The intrinsic and regulated proteomes of barley seeds in response to fungal infection

Kerr, E. D.; Phung, T. K.; Caboche, C. H.; Fox, G. P.; Platz, G. J.; Schulz, B. L.

10.1101/445916 — biochemistry — Posted on 2019-06-04

2969 Transcriptome analyses of tumor-adjacent somatic tissues reveal genes co-expressed with transposable elements

Chung, N.; Jonaid, G. M.; Quinton, S.; Ross, A.; Sexton, C. E.; Alberto, A.; Clymer, C.; Churchill, D.; Navarro Leija, O.; Han, M. V.

10.1101/385062 — genomics — Posted on 2019-06-04

2970 Spontaneous Self-assembly of Amyloid β (1-40) into Dimers

Hashemi, M.; Zhang, Y.; Lv, Z.; Lyubchenko, Y. L.

10.1101/659300 — biophysics — Posted on 2019-06-04

2971 A Smart Region-Growing algorithm for single-neuron segmentation from confocal and 2-photon datasets

Callara, A.; Magliaro, C.; Ahluwalia, A.; Vanello, N.

10.1101/287029 — bioinformatics — Posted on 2019-06-04

2972 Distinct neural mechanisms for the prosocial and rewarding properties of MDMA

Heifets, B. D.; Salgado, J. S.; Taylor, M. D.; Hoerbelt, P.; Cardozo Pinto, D. F.; Walsh, J. J.; Steinberg, E. E.; Sze, J. Y.; Malenka, R. C.

10.1101/659466 — neuroscience — Posted on 2019-06-03

2973 Developmental myelination is modified by microglial pruning

Hughes, A. N.; Appel, B.

10.1101/659482 — neuroscience — Posted on 2019-06-03

2974 Neuropilin 2 signaling mediates corticostriatal transmission, spine maintenance, and goal-directed learning in mice

Assous, M.; Martinez, E.; Eisenberg, C.; Kosc, A.; Varghese, K.; Espinoza, D.; Bhimani, S.; Shah, F.; Tepper, J.; Shiflett, M. W.; Tran, T. S.

10.1101/659342 — neuroscience — Posted on 2019-06-03

2975 Suppression of store-operated calcium entry causes dilated cardiomyopathy of the Drosophila heart

Smyth, J. T.; Wolf, M. J.; Petersen, C. E.

10.1101/659136 — physiology — Posted on 2019-06-03

2976 An improved plant toolset for high-throughput recombineering

Brumos, J.; Zhao, C.; Gong, Y.; Soriano, D.; Patel, A.; Perez-Amador, M. A.; Stepanova, A. N.; Alonso, J. M.

10.1101/659276 — plant biology — Posted on 2019-06-03

2977 GenAPI: a tool for gene absence-presence identification in fragmented bacterial genome sequences

Gabrielaite, M.; Marvig, R. L.

10.1101/658476 — bioinformatics — Posted on 2019-06-03

2978 Impaired peroxisomal import in Drosophila hepatocyte-like cells induces cardiac dysfunction through the pro-inflammatory cytokine Upd3

Huang, K.; Miao, T.; Chang, K.; Kang, P.; Jiang, Q.; Simmonds, A. J.; Di Cara, F.; Bai, H.

10.1101/659128 — physiology — Posted on 2019-06-03

2979 CAMIO for deletion analysis of endogenous DNA sequences in multicellular organisms

Chen, H.-M.; Garcia-Marques, J.; Sugino, K.; Wei, D.; Miyares, R. L.; Lee, T.

10.1101/658088 — genomics — Posted on 2019-06-03

2980 The Signaling Pathways Project: an integrated ‘omics knowledgebase for mammalian cellular signaling pathways

Ochsner, S.; Abraham, D.; Martin, K.; Ding, W.; McOwiti, A.; Wang, Z.; Andreano, K.; Hamilton, R.; Chen, Y.; Hamilton, A.; Gantner, M.; Dehart, M.; Qu, S.; Hilsenbeck, S.; Becnel, L.; Bridges, D.; Maayan, A.; Huss, J.; Stossi, F.; Foulds, C.; Kralli, A.; McDonnell, D.; McKenna, N.

10.1101/401729 — cell biology — Posted on 2019-06-03

2981 Integrative Network Analysis of Differentially Methylated and Expressed Genes for Biomarker Identification in Leukemia

Sanchez, R.; Mackenzie, S.

10.1101/658948 — cancer biology — Posted on 2019-06-03

2982 NOISYmputer: genotype imputation in bi-parental populationsfor noisy low-coverage next-generation sequencing data

Lorieux, M.; Gkanogiannis, A.; Fragoso, C.; Rami, J.-F.

10.1101/658237 — bioinformatics — Posted on 2019-06-03

2983 Age-dependent changes in electrophysiology and calcium handling: implications for pediatric cardiac research

Swift, L.; Burke, M.; Guerrelli, D.; Ramadan, M.; Reilly, M.; McCullough, D.; Chaluvadi, A.; Mulvany, C.; Jaimes, R.; Posnack, N. G.

10.1101/657551 — physiology — Posted on 2019-06-03

2984 Localist plasticity identified by mutual information

Scheler, G.; Schumann, J. M.

10.1101/658153 — neuroscience — Posted on 2019-06-03

2985 Asymmetrical cleavages of Sleeping Beauty transposons generate multiple excised transposon fragments during transposition

Gu, Q.; Yang, X.; Li, Q.; Long, Y.; Song, G.; Pei, D.; Hackett, P. B.; Chen, J.; Peng, J.; Cui, Z.

10.1101/659086 — molecular biology — Posted on 2019-06-03

2986 Cell-type-specific resolution epigenetics without the need for cell sorting or single-cell biology

Rahmani, E.; Schweiger, R.; Rhead, B.; Criswell, L. A.; Barcellos, L. F.; Eskin, E.; Rosset, S.; Sankararaman, S.; Halperin, E.

10.1101/437368 — genomics — Posted on 2019-06-03

2987 Shed skin as a source of DNA for genotyping-by-sequencing (GBS) in reptiles

Brekke, T. D.; Shier, L.; Hegarty, M. J.; Mulley, J.

10.1101/658989 — genetics — Posted on 2019-06-03

2988 Domain-invariant features for mechanism of action prediction in a multi-cell-line drug screen

Boyd, J. C.; Pinheiro, A.; Del Nery, E.; Reyal, F.; Walter, T.

10.1101/656025 — bioinformatics — Posted on 2019-06-03

2989 Engineering gene overlaps to sustain genetic constructs in vivo

Decrulle, A. L.; Frenoy, A.; Meiller-Legrand, T. A.; Bernheim, A.; Lotton, C.; Gutierrez, A.; Lindner, A. B.

10.1101/659243 — synthetic biology — Posted on 2019-06-03

2990 Zebrafish Dscaml1 is Essential for Retinal Patterning and Function of Oculomotor Subcircuits

Ma, M.; Ramirez, A. A.; Wang, T.; Roberts, R. L.; Harmon, K. E.; Schoppik, D.; Sharma, A.; Kuang, C.; Goei, S. L.; Gagnon, J. A.; Zimmerman, S.; Tsai, S. Q.; Reyon, D.; Joung, J. K.; Aksay, E. A.; Schier, A. A.; Pan, Y. A.

10.1101/658161 — neuroscience — Posted on 2019-06-03

2991 Highly precise base editing with CC context-specificity using engineered human APOBEC3G-nCas9 fusions

Liu, Z.; Chen, S.; Shan, H.; Chen, M.; Song, Y.; Lai, L.; Li, Z.

10.1101/658351 — molecular biology — Posted on 2019-06-03

2992 YY males of the dioecious plant Mercurialis annua are fully viable but produce largely infertile pollen

Li, X.; Veltsos, P.; Cossard, G.; Gerchen, J.; Pannell, J. R.

10.1101/658708 — evolutionary biology — Posted on 2019-06-03

2993 The role of maternal pioneer factors in predefining first zygotic responses to inductive signals

Gentsch, G. E.; Spruce, T.; Owens, N. D. L.; Smith, J. C.

10.1101/306803 — developmental biology — Posted on 2019-06-03

2994 Control of Septoria tritici blotch by winter wheat cultivar mixtures: Meta-analysis of 19 years of cultivar trials

Kristoffersen, R.; Jorgensen, L. N.; Eriksen, L. B.; Nielsen, G. C.; Kiaer, L. P.

10.1101/658575 — plant biology — Posted on 2019-06-03

2995 A gall-forming insect manipulates hostplant phytohormone synthesis, concentrations, and signaling

Body, M. J.; Appel, H. M.; Edger, P. P.; Schultz, J. C.

10.1101/658823 — plant biology — Posted on 2019-06-03

2996 MALT1 mediates IL-17 Neural Signaling to regulate C. elegans behavior, immunity and longevity

Flynn, S. M.; Chen, C.; Artan, M.; Barratt, S.; Crisp, A.; Nelson, G. M.; Peak-Chew, S.-Y.; Begum, F.; Skehel, M.; de Bono, M.

10.1101/658617 — neuroscience — Posted on 2019-06-03

2997 Interdependence of balance mechanisms during bipedal locomotion

Fettrow, T.; Reimann, H.; Grenet, D.; Thompson, E.; Crenshaw, J.; Higginson, J. S.; Jeka, J.

10.1101/658120 — neuroscience — Posted on 2019-06-03

2998 Biased competition in semantic representation during natural visual search

Shahdloo, M.; Celik, E.; Cukur, T.

10.1101/658096 — neuroscience — Posted on 2019-06-03

2999 Ketamine disinhibits dendrites and enhances calcium signals in prefrontal dendritic spines

Ali, F.; Gerhard, D. M.; Sweasy, K.; Pothula, S.; Pittenger, C.; Duman, R. S.; Kwan, A. C.

10.1101/659292 — neuroscience — Posted on 2019-06-03

3000 Epidermal Growth Factor signaling acts directly and through a sedation neuron to depolarizes a sleep-active neuron following cellular stress

Konietzka, J.; Fritz, M.; Spiri, S.; McWhirter, R.; Leha, A.; Palumbos, S.; Steuer Costa, W.; Oranth, A.; Gottschalk, A.; Miller, D.; Hajnal, A.; Bringmann, H.

10.1101/656512 — neuroscience — Posted on 2019-06-03

3001 Ribosomal protein RACK1 facilitates efficient translation of poliovirus and other viral IRESs

LaFontaine, E.; Miller, C. M.; Permaul, N.; Johnson, A. G.; Martin, E. T.; Fuchs, G.

10.1101/659185 — molecular biology — Posted on 2019-06-03

3002 NADH dehydrogenases contribute to extracellular electron transfer by Shewanella oneidensis MR-1 in bioelectrochemical systems

Madsen, C. S.; TerAvest, M. A.

10.1101/657668 — microbiology — Posted on 2019-06-03

3003 The Evolution of Fluoroquinolone-Resistance in Mycobacterium tuberculosis is Modulated by the Genetic Background

Castro, R. A. D.; Ross, A.; Kamwela, L.; Reinhard, M.; Loiseau, C.; Feldmann, J.; Borrell, S.; Trauner, A.; Gagneux, S.

10.1101/659045 — microbiology — Posted on 2019-06-03

3004 Hyperdiverse archaea near life limits at the polyextreme geothermal Dallol area

Belilla, J.; Moreira, D.; Jardillier, L.; Reboul, G.; Benzerara, K.; Lopez-Garcia, J. M.; Bertolino, P.; Lopez-Archilla, A. I.; Lopez-Garcia, P.

10.1101/658211 — microbiology — Posted on 2019-06-03

3005 Untargeted Metabolomic Profiling Identifies Disease-specific Profiles in Food Allergy

Crestani, E.; Harb, H.; Charbonnier, L. M.; Leirer, J.; Motsinger-Reif, A.; Rachid, R.; Phipatanakul, W.; Kaddurah-Daouk, R.; Chatila, T. A.

10.1101/657866 — immunology — Posted on 2019-06-03

3006 Consequences of consumer origin and omnivory on stability in experimental food web modules

Granados, M.; Pagnucco, K. S.; Ricciardi, A.

10.1101/589259 — ecology — Posted on 2019-06-03

3007 TMEM135 is an LXR-Inducible Regulator of Peroxisomal Metabolism

Renquist, B. J.; Madanayake, T. W.; Hennebold, J. D.; Ghimire, S.; Geisler, C. E.; Xu, Y.; Bogan, R. L.

10.1101/334979 — cell biology — Posted on 2019-06-03

3008 Space is the Place: Effects of Continuous Spatial Structure on Analysis of Population Genetic Data

Battey, C. J.; Ralph, P. L.; Kern, A. D.

10.1101/659235 — genetics — Posted on 2019-06-03

3009 A single-parasite transcriptional landscape of asexual development in Toxoplasma gondii

Xue, Y.; Theisen, T. C.; Ferrel, A.; Rastogi, S.; Quake, S. R.; Boothroyd, J. C.

10.1101/656165 — bioengineering — Posted on 2019-06-03

3010 The influence of transcranial magnetic stimulation of the medial prefrontal cortex on emotional memory schemas

Bovy, L.; Berkers, R. M. W. J.; Pottkaemper, J.; Varatheeswaran, R.; Fernandez, G.; Tendolkar, I.; Dresler, M.

10.1101/656348 — neuroscience — Posted on 2019-06-03

3011 Layer 6 ensembles can selectively regulate the behavioral impact and layer-specific representation of sensory deviants

Voigts, J.; Deister, C. A.; Moore, C. I.

10.1101/657114 — neuroscience — Posted on 2019-06-03

3012 Conditional, inducible gene silencing in dopamine neurons reveals a sex-specific role for Rit2 GTPase in acute cocaine response and striatal function

Sweeney, C. G.; Kearney, P. J.; Fagan, R. L.; Smith, L. A.; Bolden, N. C.; Zhao-Shea, R.; Rivera, I. V.; Kolpakova, J.; Xie, J.; Gao, G.; Tapper, A. R.; Martin, G. E.; Melikian, H. E.

10.1101/658856 — neuroscience — Posted on 2019-06-03

3013 Pharmacological enrichment of polygenic risk for precision medicine in complex disorders

Reay, W. R.; Atkins, J. R.; Carr, V. J.; Green, M. J.; Cairns, M. J.

10.1101/655001 — genetics — Posted on 2019-06-03

3014 Preadaptation of pandemic GII.4 noroviruses in hidden virus reservoirs years before emergence

Ruis, C.; Lindesmith, L.; Mallory, M.; Brewer-Jensen, P. D.; Bryant, J.; Costantini, V.; Monit, C.; Vinje, J.; Baric, R. S.; Goldstein, R. A.; Breuer, J. A.

10.1101/658765 — evolutionary biology — Posted on 2019-06-03

3015 From spikes to intercellular waves: tuning the strength of calcium stimulation modulates organ size control

Paravitorghabeh, R.; Soundarrajan, D.; Zartman, J. J.

10.1101/649582 — systems biology — Posted on 2019-06-03

3016 Diurnal.plant.tools: comparative transcriptomic and co-expression analyses of diurnal gene expression of the Archaeplastida kingdom

Wei Xiong Ng, J.; Tan, Q. W.; Ferrari, C.; Mutwil, M.

10.1101/658559 — plant biology — Posted on 2019-06-03

3017 Comparative analyses of 3654 chloroplast genomes unraveled new insights into the evolutionary mechanism of green plants

Mu, W.; Yang, T.; Liao, X.; Liu, Y.; Sahu, S. K.; Liu, X.; Liu, H.; Strube, M. L.; Zhong, B.; Yang, L.

10.1101/655241 — plant biology — Posted on 2019-06-03

3018 Adaptive and Innate Immune Cell Responses in Tendons and Lymph Nodes After Tendon Injury and Repair

Noah, A. C.; Li, T. M.; Martinez, L. M.; Wada, S.; Swanson, J. B.; Disser, N. P.; Sugg, K. B.; Rodeo, S. A.; Lu, T. T.; Mendias, C. L.

10.1101/658310 — physiology — Posted on 2019-06-03

3019 Targeting glutamine metabolism enhances tumor specific immunity by inhibiting the generation of MDSCs and reprogramming tumor associated macrophages

Oh, M.-H.; Sun, I.-H.; Zhao, L.; Leone, R.; Sun, I.-M.; Xu, W.; Collins, S. L.; Tam, A. J.; Blosser, R. L.; Patel, C. H.; Englert, J.; Arwood, M. L.; Wen, J.; Chan-Li, Y.; Majer, P.; Rais, R.; Slusher, B. S.; Horton, M. R.; Powell, J. D.

10.1101/656553 — immunology — Posted on 2019-06-03

3020 Tolerance of nonsynonymous variation is closely correlated between human and mouse orthologues

Powell, G.; Simon, M.; Pulit, S.; Mallon, A.-M.; Lindgren, C. M.

10.1101/657981 — genomics — Posted on 2019-06-03

3021 Dosage effect of multiple genes accounts for multisystem disorder of myotonic dystrophy type 1

Yin, Q.; Wang, H.; Xie, Z.; Jin, L.; Ding, Y.; Li, N.; Li, Y.; Wang, Q.; Liu, X.; Wang, K.; Xu, L.; Cheng, Y.; Chang, B.; Zhong, C.; Yu, Q.; Tang, W.; Yang, W.; Zhang, F.; Ding, C.; Bao, L.; Zhou, B.; Hu, P.; Li, J.

10.1101/658526 — genetics — Posted on 2019-06-03

3022 Electromagnetic mapping of the effects of deep brain stimulation and dopaminergic medication on movement-related cortical activity and corticomuscular coherence in Parkinson’s disease

Sridharan, K. S.; Hojlund, A.; Johnsen, E. L.; Sunde, N. A.; Beniczky, S.; Ostergaard, K.

10.1101/657882 — neuroscience — Posted on 2019-06-03

3023 Walking cadence affects the recruitment of the medial-lateral balance mechanisms

Fettrow, T.; Reimann, H.; Grenet, D.; Crenshaw, J.; Higginson, J. S.; Jeka, J.

10.1101/658070 — neuroscience — Posted on 2019-06-03

3024 Caenorhabditis elegans Exhibits Positive Gravitaxis

Chen, W.-L.; Ko, H.; Chuang, H.-S.; Bau, H. H.; Raizen, D.

10.1101/658229 — neuroscience — Posted on 2019-06-03

3025 Metabolic Alterations in Human Peripheral Blood Mononuclear Cells Associate with Progression to Islet Autoimmunity and Type 1 Diabetes

Sen, P.; Dickens, A. M.; Lopez-Bascon, M. A.; Lindeman, T.; Kemppainen, E.; Lamichhane, S.; Ronkko, T.; Ilonen, J.; Veijola, R.; Hyoty, H.; Hyotylainen, T.; Knip, M.; Oresic, M.

10.1101/658500 — molecular biology — Posted on 2019-06-03

3026 A distinct neutrophil population invades the central nervous system during pancreatic cancer

Burfeind, K. G.; Zhu, X.; Norgard, M. A.; Levasseur, P. R.; Olson, B.; Michaelis, K. A.; Torres, E. R. S.; Jeng, S.; McWeeney, S.; Raber, J.; Marks, D. L.

10.1101/659060 — immunology — Posted on 2019-06-03

3027 Variations and expression features of CYP2D6 contribute to schizophrenia risk

Ma, L.; Chetty, S.

10.1101/659102 — genetics — Posted on 2019-06-03

3028 Incomplete resilience of a shallow lake to a brownification event

Kazanjian, G.; Brothers, S.; Köhler, J.; Hilt, S.

10.1101/658591 — ecology — Posted on 2019-06-03

3029 Long-term influence of climate and experimental eutrophication regimes on phytoplankton blooms

Salk, K. R.; Venkiteswaran, J. J.; Couture, R.-M.; Higgins, S. N.; Paterson, M. J.; Schiff, S. L.

10.1101/658799 — ecology — Posted on 2019-06-03

3030 Expectation pooling: An effective and interpretable pooling method for predicting DNA-protein binding

Luo, X.; Tu, X.; Ding, Y.; Gao, G.; Deng, M.

10.1101/658427 — bioinformatics — Posted on 2019-06-03

3031 DTI-CDF: a CDF model towards the prediction of DTIs based on hybrid features

Chu, Y.; Zhang, Y.; Wang, W.; Shan, X.; Wang, X.; Xiong, Y.; Wei, D.

10.1101/657973 — bioinformatics — Posted on 2019-06-03

3032 Intracellular nanoparticle delivery by oncogenic KRAS-mediated macropinocytosis

Liu, X.; Ghosh, D.

10.1101/658039 — bioengineering — Posted on 2019-06-03

3033 Benefits of commitment in hierarchical inference

Qiu, C.; Luu, L.; Stocker, A. A.

10.1101/658914 — animal behavior and cognition — Posted on 2019-06-03

3034 Reconsidering electrophysiological markers of response inhibition in light of trigger failures in the stop-signal task

Skippen, P.; Fulham, R.; Michie, P. T.; Matzke, D.; Heathcote, A.; Karayanidis, F.

10.1101/658336 — neuroscience — Posted on 2019-06-03

3035 The cohesin loader NIPBL interacts with pre-ribosomal RNA and treacle to regulate ribosomal RNA synthesis

10.1101/658492 — molecular biology — Posted on 2019-06-03

3036 Chemical Impacts of the Microbiome Across Scales Reveal Novel Conjugated Bile Acids

Quinn, R. A.; Vrbanac, A.; Melnik, A. V.; Patras, K. A.; Christy, M.; Nelson, A. T.; Aksenov, A. A.; Tripathi, A.; Humphrey, G.; da Silva, R.; Bussell, R.; Thron, T.; Wang, M.; Vargas, F.; Gauglitz, J.; Meehan, M. J.; Poulsen, O.; Boland, B. S.; Chang, J. T.; Sandborn, W. J.; Lim, M.; Garg, N.; Lumeng, J.; Kazmierczak, B. I.; Jain, R.; Egan, M.; Rhee, K. E.; Haddad, G. G.; Siegel, D.; Mazmanian, S.; Nizet, V.; Knight, R.; Dorrestein, P. C.

10.1101/654756 — microbiology — Posted on 2019-06-03

3037 Enhanced efficacy of vaccination with vaccinia virus in old versus young mice

Ferguson, B. J.; Smith, G. L.; Shmeleva, E. V.

10.1101/658005 — immunology — Posted on 2019-06-03

3038 Transient invaders can induce shifts between alternative stable states of microbial communities

Amor, D. R.; Ratzke, C.; Gore, J.

10.1101/659052 — ecology — Posted on 2019-06-03

3039 Generation of a Retina Reporter hiPSC Line to Label Progenitor, Ganglion, and Photoreceptor Cell Types

Lam, P. T.; Gutierrez, C.; Del Rio-Tsonis, K.; Robinson, M. L.

10.1101/658963 — developmental biology — Posted on 2019-06-03

3040 A versatile ES cell-based melanoma mouse modeling platform

Bok, I.; Vera, O.; Xu, X.; Jasani, N.; Nakamura, K.; Reff, J.; Nenci, A.; Gonzalez, J. G.; Karreth, F. A.

10.1101/658260 — cancer biology — Posted on 2019-06-03

3041 Liquid-liquid phase separation and aggregation of the prion protein globular domain modulated by a high-affinity DNA aptamer

Matos, C. O.; Passos, Y. M.; Amaral, M. J.; Macedo, B.; Tempone, M.; Bezerra, O. C. L.; Moraes, M. O.; Almeida, M. S.; Weber, G.; Missailidis, S.; Silva, J. L.; Pinheiro, A. S.; Cordeiro, Y.

10.1101/659037 — biophysics — Posted on 2019-06-03

3042 An improved encoding of genetic variation in a Burrows-Wheeler transform

Buechler, T.; Ohlebusch, E.

10.1101/658716 — bioinformatics — Posted on 2019-06-03

3043 Silver nanoparticle induced oxidative stress augments anticancer gut bacterial metabolites production

Bhalla, P.; Rengaswamy, R.; Karunagaran, D.; Suraishkumar, G. K.; Sahoo, S.

10.1101/658609 — systems biology — Posted on 2019-06-03

3044 Pneumococcal Colonisation is an Asymptomatic Event in Healthy Adults using an Experimental Human Colonisation Model.

Trimble, A.; Connor, V.; Robinson, R.; Hancock, C.; Wang, D.; Gordon, S.; Ferreira, D.; Wright, A.; Collins, A.

10.1101/652370 — microbiology — Posted on 2019-06-03

3045 The neonatal microenvironment programs conventional and intestinal Tbet+ γδT17 cells through the transcription factor STAT5

Kadekar, D.; Agerholm, R.; Rizk, J.; Neubauer, H.; Suske, T.; Maurer, B.; Vinals, M. T.; Comelli, E.; Taibi, A.; Moriggl, R.; Bekiaris, V.

10.1101/658542 — immunology — Posted on 2019-06-03

3046 Polycomb contraction differentially regulates terminal human hematopoietic differentiation programs

Lorzadeh, A.; Hammond, C.; Knapp, D.; Cao, Q.; Wang, F.; Heravi-Moussavi, A.; Wong, M.; Bilenky, M.; Moksa, M.; Sharafianardakani, Z.; Lavoie, P.; Eaves, C.; Hirst, M.

10.1101/647438 — cell biology — Posted on 2019-06-03

3047 Improved detection of gene fusions by applying statistical methods reveals new oncogenic RNA cancer drivers

Dehghannasiri, R.; Freeman, D. E.; Jordanski, M.; Hsieh, G. L.; Damljanovic, A.; Lehnert, E.; Salzman, J.

10.1101/659078 — bioinformatics — Posted on 2019-06-03

3048 Protein expression of prenyltransferase subunits in postmortem schizophrenia dorsolateral prefrontal cortex

Pinner, A. L.; Mueller, T. M.; Alganem, K.; McCullumsmith, R.; Meador-Woodruff, J. H.

10.1101/654673 — neuroscience — Posted on 2019-06-03

3049 Preconditioning cathodal transcranial direct current stimulation facilitates the neuroplastic effect of subsequent anodal transcranial direct current stimulation applied during cycling in young adults

Pourmajidian, M.; Lauber, B.; Sidhu, S. K.

10.1101/653634 — neuroscience — Posted on 2019-06-03

3050 BigTop: A Three-Dimensional Virtual Reality Tool for GWAS Visualization

Westreich, S. T.; Meyer, C.; Nattestad, M.

10.1101/650176 — bioinformatics — Posted on 2019-06-03

3051 Functional disconnection of associative cortical areas predicts performance during BCI learning

Corsi, M.-C.; Chavez, M.; Schwartz, D.; George, N.; Hugueville, L.; Kahn, A. E.; Dupont, S.; Bassett, D. S.; De Vico Fallani, F.

10.1101/487074 — neuroscience — Posted on 2019-06-03

3052 Exogenous application of KNO3 elevates the salinity tolerance of Stevia rebaudiana through ion homeostasis mechanism

Mahajan, M.; Sharma, S.; Kumar, P.; Pal, P. K.

10.1101/657767 — plant biology — Posted on 2019-06-03

3053 Enhanced polar auxin transport in tomato polycotyledon mutant seems to be related to glutathione levels

Nongmaithem, S.; Ponukumatla, R.; Sreelakshmi, Y.; Frasse, P.; Bouzayen, M.; Sharma, R.

10.1101/656249 — plant biology — Posted on 2019-06-03

3054 Raman Spectroscopic Study of the Influence of Oxytocin and Uvariodendron anisatum Verdeck (Annonaceae) Freeze-dried Extracts on Diet Induced Obesity in Sprague Dawley Rats

Birech, Z.; Mwangi, P. W.; Sehmi, P. K.; Nyaga, N. M.

10.1101/523555 — physiology — Posted on 2019-06-03

3055 On the emergence of Candida auris: climate change, azoles, swamps and birds

Casadevall, A.; Kontoyiannis, D. P.; Robert, V.

10.1101/657635 — microbiology — Posted on 2019-06-03

3056 Learning Context-aware Structural Representations to Predict Antigen and Antibody Binding Interfaces

Bailey-Kellogg, C.; Pittala, S.

10.1101/658054 — bioinformatics — Posted on 2019-06-03

3057 Simplified high-throughput methods for deep proteome analysis on the timsTOF Pro

Sandow, J. J.; Infusini, G.; Dagley, L.; Larsen, R.; Webb, A. I.

10.1101/657908 — biochemistry — Posted on 2019-06-03

3058 Augmenting biologging with supervised machine learning to study in situ behavior of the medusa Chrysaora fuscescens

Fannjiang, C.; Mooney, T. A.; Cones, S.; Mann, D.; Shorter, K. A.; Katija, K.

10.1101/657684 — animal behavior and cognition — Posted on 2019-06-03

3059 Down regulation of Hmgcr in response to Influenza A infection is independent of the IFN response in human cells

Lu, H.; Talbot, S.

10.1101/650465 — immunology — Posted on 2019-06-03

3060 Rapid and site-specific deep phosphoproteome profiling by data-independent acquisition (DIA) without the need for spectral libraries

Bekker-Jensen, D. B.; Bernhardt, O.; Hogrebe, A.; Martinez del Val, A.; Verbeke, L.; Gandhi, T.; Kelstrup, C. D.; Reiter, L.; Olsen, J. V.

10.1101/657858 — biochemistry — Posted on 2019-06-03

3061 A rule-based data-informed cellular consensus map of the human mononuclear phagocyte cell space

Guenther, P.; Cirovic, B.; Bassler, K.; Haendler, K.; Becker, M.; Dutertre, C. A.; Bigley, V.; Newell, E. W.; Collin, M.; Ginhoux, F.; Schlitzer, A.; Schultze, J. L.

10.1101/658179 — immunology — Posted on 2019-06-03

3062 methylSCOPA and META-methylSCOPA: software for the analysis and aggregation of epigenome-wide association studies of multiple correlated phenotypes

Draisma, H.; Liu, J.; Pupko, I.; Demirkan, A.; Balkhiyarova, Z.; Morris, A. P.; Magi, R.; Wielscher, M.; Hassan, S.; van Duijn, C. M.; Sebert, S.; Jarvelin, M.-R.; Kaakinen, M. A.; Prokopenko, I.

10.1101/656918 — bioinformatics — Posted on 2019-06-03

3063 Robust Hierarchical Density Estimation and Regression for Re-stained Histological Whole Slide Image Co-registration

Jiang, J.; Larson, N.; Prodduturi, N.; Flotte, T.; Hart, S.

10.1101/565564 — bioinformatics — Posted on 2019-06-03

3064 Whole-Genome Association Analyses of Sleep-disordered Breathing Phenotypes in the NHLBI TOPMed Program

Cade, B. E.; Lee, J.; Sofer, T.; Wang, H.; Zhang, M.; Chen, H.; Gharib, S. A.; Gottlieb, D. J.; Guo, X.; Lane, J. M.; Liang, J.; Lin, X.; Mei, H.; Patel, S. R.; Purcell, S. M.; Saxena, R.; Shah, N. A.; Evans, D. S.; Hanis, C. L.; Hillman, D. R.; Mukherjee, S.; Palmer, L. J.; Stone, K. L.; Tranah, G. J.; NHLBI Trans-Omics for Precision Medicine (TOPMed), ; Abecasis, G.; Boerwinkle, E.; Correa, A.; Cupples, L. A.; Kaplan, R. C.; Nickerson, D. A.; North, K. E.; Psaty, B. M.; Rotter, J. I.; Rich, S. S.; Tracy, R. P.; Vasan, R. S.; Wilson, J. G.; Zhu, X.; Redline, S.; TOPMed Sleep Working Group,

10.1101/652966 — genetics — Posted on 2019-06-03

3065 Evading non-essential fetal oocyte attrition maximizes the ovarian reserve

Tharp, M. E.; Malki, S.; Bortvin, A.

10.1101/656645 — developmental biology — Posted on 2019-06-03

3066 Dynamic Morphoskeletons in Development

Serra, M.; Streichan, S.; Mahadevan, L.

10.1101/657585 — developmental biology — Posted on 2019-06-03

3067 Recurrent genetic abnormalities in human pluripotent stem cells: definition and routine detection in culture supernatant by targeted droplet digital PCR

Assou, S.; Girault, N.; Plinet, M.; Bouckenheimer, J.; Sansac, C.; Combe, M.; Mianne, J.; Bourguignon, C.; Fieldes, M.; Ahmed, E.; Commes, T.; Boureux, A.; Lemaitre, J.-M.; De Vos, J.

10.1101/658484 — cell biology — Posted on 2019-06-03

3068 Loss-functions matter, on optimizing score functions for the estimation of protein models accuracy

Sidi, T.; Keasar, C.

10.1101/651349 — bioinformatics — Posted on 2019-06-03

3069 PRE-BORDER GENE FOXB1 REGULATES THE DIFFERENTIATION TIMING AND AUTONOMIC NEURONAL POTENTIAL OF HUMAN NEURAL CREST CELLS

Leung, A. W.; Lopez-Giraldez, F.; Broton, C.; Lin, K.; Prasad, M. S.; Hernandez, J. C.; Xiao, A.; Garcia-Castro, M. I.

10.1101/646026 — developmental biology — Posted on 2019-06-03

3070 High fat diet induces microbiota-dependent silencing of enteroendocrine cells

Ye, L.; Mueller, O.; Bagwell, J.; Bagnat, M.; Liddle, R. A.; Rawls, J. F.

10.1101/658435 — developmental biology — Posted on 2019-06-03

3071 Cytotoxicity of 1-deoxysphingolipid Unraveled by Genome-wide Genetic Screens and Lipidomics

Haribowo, A. G.; Hannich, J. T.; Michel, A. H.; Megyeri, M.; Schuldiner, M.; Kornmann, B.; Riezman, H.

10.1101/658690 — cell biology — Posted on 2019-06-03

3072 Multiscale activity imaging in the mammary gland reveals how oxytocin enables lactation

Stevenson, A. J.; Vanwalleghem, G.; Stewart, T. A.; Condon, N. D.; Lloyd-Lewis, B.; Marino, N.; Putney, J. W.; Scott, E. K.; Ewing, A. D.; Davis, F. M.

10.1101/657510 — cell biology — Posted on 2019-06-03

3073 Mitochondrial fusion in reactive astrocytes coordinates local metabolic domains to promote vascular repair

Goebel, J.; Pelzer, P.; Engelhardt, E.; Sakthivelu, V.; Jahn, H. M.; Jevtic, M.; Folz-Donahue, K.; Kukat, C.; Schauss, A.; Frese, C.; Ghanem, A.; Conzelmann, K.-K.; Motori, E.; Bergami, M.

10.1101/657999 — cell biology — Posted on 2019-06-03

3074 Sox2 is an oncogenic driver of small cell lung cancer

Voigt, E.; Wollenzien, H.; Feiner, J.; Thompson, E.; Vande Kamp, M.; Kareta, M.

10.1101/657924 — cancer biology — Posted on 2019-06-03

3075 Temporal dynamics of Bacteria, Archaea and protists in equatorial coastal waters

Chénard, C.; Wijaya, W.; Vaulot, D.; Lopes Dos Santos, A.; Martin, P.; Kaur, A.; Lauro, F.

10.1101/658278 — microbiology — Posted on 2019-06-03

3076 Axial variation of deoxyhemoglobin density as a source of BOLD low-frequency time lag structure.

Aso, T.; Urayama, S.; Fukuyama, H.; Murai, T.

10.1101/658377 — biophysics — Posted on 2019-06-03

3077 Ultrasound- and microbubble-mediated targeted delivery of therapeutic microRNA-loaded nanocarriers to deep liver and kidney tissues in pigs

di Ianni, T.; Bose, R. J. C.; Sukumar, U. K.; Bachawal, S.; Wang, H.; Telichko, A.; Herickhoff, C. D.; Robinson, E.; Baker, S.; Vilches-Moure, J. G.; Felt, S. A.; Gambhir, S. S.; Paulmurugan, R.; Dahl, J. D.

10.1101/592931 — bioengineering — Posted on 2019-06-03

3078 Linking genotypes with multiple phenotypes in single-cell CRISPR screens

Yang, L.; Zhu, Y.; Yu, H.; Chen, S.; Chu, Y.; Huang, H.; Zhang, J.; Li, W.

10.1101/658146 — bioinformatics — Posted on 2019-06-03

3079 A mechanistic model for the negative binomial distribution of single-cell mRNA counts

Amrhein, L.; Harsha, K.; Fuchs, C.

10.1101/657619 — bioinformatics — Posted on 2019-06-03

3080 Familial t(1;11) translocation is associated with disruption of white matter structural integrity and oligodendrocyte-myelin dysfunction

Vasistha, N. A.; Johnstone, M.; Barton, S.; Mayerl, S.; Thangaraj, B.; Dando, O.; Grunewald, E.; Alloza, C.; Bastin, M.; Livesey, M.; Economides, K.; Magnani, D.; Makedonopolou, P.; Burr, K.; Story, D.; Blackwood, D.; Wyllie, D.; McIntosh, A. M.; Millar, K. M.; ffrench-Constant, C.; Hardingham, G.; Lawrie, S.; Chandran, S.

10.1101/657163 — neuroscience — Posted on 2019-06-03

3081 Robust Neural Networks are More Interpretable for Genomics

Koo, P. K.; Qian, S.; Kaplun, G.; Volf, V.; Kalimeris, D.

10.1101/657437 — genomics — Posted on 2019-06-03

3082 Whole-genome sequencing of 128 camels across Asia provides insights into origin and migration of domestic Bactrian camels

Ming, L.; Yuan, L.; Yi, L.; Ding, G.; Hasi, S.; Chen, G.; Jambl, T.; Hedayat-Evright, N.; Batmunkh, M.; Badmaevna, G. K.; Gan-Erdene, T.; TS, B.; Zhang, W.; Zulipikaer, A.; Hosblig, ; Erdemt, ; Natyrov, A.; Mamay, P.; Narenbatu, ; Meng, G.; Narangerel, C.; Khongorzul, O.; He, J.; Hai, L.; Lin, W.; Sirendalai, ; Sarentuya, ; Aiyisi, ; Li, Y.; Wang, Z.; Jirimutu,

10.1101/656231 — genomics — Posted on 2019-06-03

3083 LST-1 acts in trans with a conserved RNA-binding protein to maintain stem cells

Haupt, K. A.; Enright, A. L.; Ferdous, A. S.; Kershner, A. M.; Shin, H.; Wickens, M. A.; Kimble, J.

10.1101/657312 — developmental biology — Posted on 2019-06-03

3084 Inference of bacterial small RNA regulatory networks and integration with transcription factor driven regulatory networks

Arrieta-Ortiz, M. L.; Hafemeister, C.; Shuster, B. N.; Baliga, N. S.; Bonneau, R.; Eichenberger, P.

10.1101/657478 — systems biology — Posted on 2019-06-03

3085 Spatially resolved dendritic integration: Towards a functional classification of neurons

Kirch, C.; Gollo, L. L.

10.1101/657403 — neuroscience — Posted on 2019-06-03

3086 Influenza preimmunity increases vaccination efficacy by influencing antibody longevity,neutralization activity, and epitope specificity

Kelvin, A. A.; Ross, T.; Francis, M. E.; McNeil, M.; King, M. L.

10.1101/658880 — microbiology — Posted on 2019-06-03

3087 An integrated approach to assess Knowledge, Attitude and Practices (KAP) regarding major Neglected Tropical Diseases endemic in the Mbengwi health district (North West Region, Cameroon)

Sumo, L.; Lenou Nanga, C.; Ntonifor, N. H.; Chenkumo Kengmoni, N.; Amana Bokagne, V.; Awah, C.; Niamsi Emalio, Y.; Nana Djeunga, H.

10.1101/658849 — epidemiology — Posted on 2019-06-03

3088 Positive association between Brucella spp seroprevalences in livestock and humans from a cross-sectional study in Garissa and Tana River Counties, Kenya

Kairu-Wanyoike, S.; Nyamwaya, D.; Wainaina, M.; Lindahl, J.; Ontiri, E.; Bukachi, S.; Njeru, I.; Karanja, J.; Sang, R.; Randolph, G.; Bett, B.

10.1101/658864 — epidemiology — Posted on 2019-06-03

3089 Augmentation of Virtual Endoscopic Images with Intra-operative Data using Content-Nets

Esteban Lansaque, A.; Sanchez Ramos, C.; Borras, A.; Gil Resina, D.

10.1101/658807 — bioengineering — Posted on 2019-06-03

3090 3D-printed moulds of renal tumours for image-guided tissue sampling in the clinical setting

Mireia, C.-O.; Gehrung, M.; Ursprung, S.; Gill, A. B.; Warren, A. Y.; Gallagher, F. A.; Mitchell, T. J.; Mendichovszky, I. A.; Priest, A. N.; Stewart, G. D.; Sala, E.; Markowetz, F.

10.1101/658831 — bioengineering — Posted on 2019-06-03

3091 Associations between neonatal cry acoustics and visual attention during the first year

Kivinummi, A.; Naithani, G.; Tammela, O.; Virtanen, T.; Kurkela, E.; Alhainen, M.; Niehaus, D. J.; Lachman, A.; Leppänen, J.; Peltola, M.

10.1101/658732 — neuroscience — Posted on 2019-06-03

3092 Arabidopsis SWR1-associated protein methyl-CpG-binding domain 9 is required for histone H2A.Z deposition.

Potok, M. E.; Wang, Y.; Xu, L.; Zhong, Z.; Liu, W.; Feng, S.; Naranbaatar, B.; Rayatpisheh, S.; Wang, Z.; Wohlschlegel, J. E.; Ausin, I.; Jacobsen, S. E.

10.1101/657296 — molecular biology — Posted on 2019-06-03

3093 The human gut virome is highly diverse, stable and individual-specific

Shkoporov, A.; Clooney, A. G.; Sutton, T. D. S.; Ryan, F. J.; Daly, K. M.; Nolan, J. A.; McDonnell, S. A.; Khokhlova, E. V.; Draper, L. A.; Forde, A.; Guerin, E.; Ross, R. P.; Hill, C.

10.1101/657528 — microbiology — Posted on 2019-06-03

3094 Systematic detection of divergent brain proteins in human evolution and their roles in cognition

Dumas, G.; Malesys, S.; Bourgeron, T.

10.1101/658658 — genetics — Posted on 2019-06-03

3095 Tooth fracture frequency in gray wolves reflects prey availability

Van Valkenburgh, B.; Peterson, R. O.; Smith, D. W.; Stahler, D. R.; Vucetich, J. A.

10.1101/658468 — ecology — Posted on 2019-06-03

3096 An Engineered Cas-Transposon System for Programmable and Precise DNA Transpositions

Chen, S. P.; Wang, H. H.

10.1101/654996 — synthetic biology — Posted on 2019-06-03

3097 Brain cooling marginally increases maximum thermal tolerance in Atlantic cod

Jutfelt, F.; Roche, D.; Clark, T. D.; Norin, T.; Binning, S.; Speers-Roesch, B.; Amcoff, M.; Morgan, R.; Andreassen, A.; Sundin, J.

10.1101/658062 — physiology — Posted on 2019-06-03

3098 A framework for evaluating correspondence between brain images using anatomical fiducials

Lau, J. C.; Parrent, A. G.; Demarco, J.; Gupta, G.; Kai, J.; Stanley, O. W.; Kuehn, T.; Park, P. J.; Ferko, K.; Khan, A. R.; Peters, T. M.

10.1101/460675 — neuroscience — Posted on 2019-06-03

3099 Dynamic up- and down-regulation of the default (DMN) and extrinsic (EMN) mode networks during alternating task-on and task-off periods

Hugdahl, K.; Kazimierczak, K.; Beresniewicz, J.; Kompus, K.; Westerhausen, R.; Ersland, L.; Grüner, R.; Specht, K.

10.1101/658757 — neuroscience — Posted on 2019-06-03

3100 Candida utilis yeast as a functional protein source for Atlantic salmon (Salmo salar L.): Local intestinal tissue and plasma proteome responses

Reveco-Urzua, F. E.; Hofossaeter, M.; Rao Kovi, M.; Mydland, L. T.; Anestad, R.; Sorby, R.; Press, C. M.; Overland, M.

10.1101/658781 — immunology — Posted on 2019-06-03

3101 Benchmarking Transposable Element Annotation Methods for Creation of a Streamlined, Comprehensive Pipeline

Ou, S.; Su, W.; Liao, Y.; Chougule, K.; Ware, D.; Peterson, T.; Jiang, N.; Hirsch, C. N.; Hufford, M. B.

10.1101/657890 — genomics — Posted on 2019-06-03

3102 Social, demographic, health care and co-morbidity predictors of tuberculosis mortality in Amazonas, Brazil: a multiple cause of death approach

Sampaio, V. d. S.; Silva, L. C. F. d.; Castro, D. B. d.; Balieiro, P. C. d. S.; Cabrinha, A. A.; Leal Costa, A. J.

10.1101/658773 — epidemiology — Posted on 2019-06-03

3103 Continuous single cell transcriptome dynamics reveal a default vascular smooth muscle fate of FLK1 mesoderm

Zhao, H.; Choi, K.

10.1101/374629 — developmental biology — Posted on 2019-06-03

3104 Modelling Gene-Protein-Reaction Associations on an FPGA

Coggins, M.

10.1101/658195 — bioinformatics — Posted on 2019-06-03

3105 ARA: accurate, reliable and active histopathological image classification framework with Bayesian deep learning

Raczkowski, Łukasz; Mozejko, M.; Zambonelli, J.; Szczurek, E.

10.1101/658138 — bioinformatics — Posted on 2019-06-03

3106 Alignment and mapping methodology influence transcript abundance estimation

Srivastava, A.; Malik, L.; Zakeri, M.; Sarkar, H.; Soneson, C.; Love, M. I.; Kingsford, C.; Patro, R.

10.1101/657874 — bioinformatics — Posted on 2019-06-03

3107 A live-cell imaging system for visualizing the transport of Marburg virus nucleocapsid-like structures

Takamatsu, Y.; Noda, T.; Becker, S.

10.1101/658419 — molecular biology — Posted on 2019-06-03

3108 FAIRshake: toolkit to evaluate the findability, accessibility, interoperability, and reusability of research digital resources

Clark, D. J. B.; Wang, L.; Jones, A.; Wojciechowicz, M. L.; Torre, D.; Jagodnik, K. M.; Jenkins, S. L.; McQuilton, P.; Flamholz, Z.; Silverstein, M. C.; Schilder, B. M.; Robasky, K.; Castillo, C.; Idaszak, R.; Ahalt, S. C.; Williams, J. J.; Schurer, S.; Cooper, D. J.; de Miranda Azevedo, R.; Klenk, J. A.; Haendel, M. A.; Nedzel, J.; Avillach, P.; Shimoyama, M.; Harris, R. M.; Gamble, M.; Poten, R.; Charbonneau, A. L.; Larkin, J.; Brown, C. T.; Bonazzi, V. R.; Dumontier, M. J.; Assunta-Sansone, S.; Ma'ayan, A.

10.1101/657676 — bioinformatics — Posted on 2019-06-03

3109 A Simple Deep Learning Approach for Detecting Duplications and Deletions in Next-Generation Sequencing Data

Hill, T.; Unckless, R. L.

10.1101/657361 — bioinformatics — Posted on 2019-06-03

3110 Post-translational modifications drive protein stability to control the dynamic beer brewing proteome

Kerr, E. D.; Caboche, C. H.; Schulz, B. L.

10.1101/358796 — biochemistry — Posted on 2019-06-03

3111 One-week exposure to South Indian Classical music clip having incremental variation in tempo and octave promotes better anxiety reduction among medical students - an EEG based study

Sharma, S.; Sasidharan, A.; Marigowda, V.; Vijay, M.; Sharma, S.; Mukundan, C. S.; Pandit, L.

10.1101/656777 — neuroscience — Posted on 2019-06-03

3112 The conical shape of DIM lipids promotes Mycobacterium tuberculosis infection of macrophages

Augenstreich, J.; Haanappel, E.; Ferre, G.; Czaplicki, G.; Jolibois, F.; Destainville, N.; Guilhot, C.; Milon, A.; Astarie-Dequeker, C.; Chavent, M.

10.1101/649541 — biophysics — Posted on 2019-06-03

3113 ENHANCE: Accurate denoising of single-cell RNA-Seq data

Wagner, F.; Barkley, D.; Yanai, I.

10.1101/655365 — bioinformatics — Posted on 2019-06-03

3114 Limits in the detection of m6A changes using MeRIP/m6A-seq

McIntyre, A. B. R.; Gokhale, N. S.; Cerchietti, L.; Jaffrey, S. R.; Horner, S. M.; Mason, C. E.

10.1101/657130 — bioinformatics — Posted on 2019-06-03

3115 Diminished cortical excitation during perceptual impairments in a mouse model of autism

Del Rosario, J.; Speed, A.; Arrowood, H.; Motz, C.; Pardue, M.; Haider, B.

10.1101/657189 — neuroscience — Posted on 2019-06-03

3116 Brain Network Mechanisms of General Intelligence

Sripada, C.; Angstadt, M.; Rutherford, S.; Taxali, A.

10.1101/657205 — neuroscience — Posted on 2019-06-03

3117 Comparative metagenome-assembled genome analysis of Lachnovaginosum genomospecies, formerly known as BVAB1

Holm, J. B.; France, M.; Ma, B. B.; Robinson, C. K.; McComb, E.; Brotman, R. M.; Ravel, J.

10.1101/657197 — microbiology — Posted on 2019-06-03

3118 HiNT: a computational method for detecting copy number variations and translocations from Hi-C data

Wang, S.; Lee, S.; Chu, C.; Jain, D.; Nelson, G.; Walsh, J. M.; Alver, B. H.; Park, P. J.

10.1101/657080 — bioinformatics — Posted on 2019-06-03

3119 The Avocado Genome Informs Deep Angiosperm Phylogeny, Highlights Introgressive Hybridization, and Reveals Pathogen Influenced Gene Space Adaptation

10.1101/654285 — genomics — Posted on 2019-06-02

3120 Numerically enhanced adaptive optics-based 3D STED microscopy for deep-tissue super-resolved imaging

Zdankowski, P.; Trusiak, M.; McGloin, D.; Swedlow, J. R.

10.1101/653394 — biophysics — Posted on 2019-06-02

3121 Does women’s interpersonal anxiety track changes in steroid hormone levels?

Hahn, A. C.; DeBruine, L. M.; Pesce, L. A.; Diaz, A.; Aberson, C. L.; Jones, B. C.

10.1101/456319 — animal behavior and cognition — Posted on 2019-06-02

3122 Computing Signal Transduction in signaling networks modeled as Boolean Networks, Petri Nets and hypergraphs

Sordo Vieira, L.; Vera-Licona, P.

10.1101/272344 — systems biology — Posted on 2019-06-02

3123 Structural basis of the differential binding of engineered knottins to integrins αVβ3 and α5β1

van Agthoven, J. F.; Shams, H.; Cochran, F. V.; Alonso, J. L.; Kintzing, J. R.; Grakami, K.; Adair, B. D.; Xiong, J.-P.; Mofrad, M. R.; Cochran, J. R.; Arnaout, M. A.

10.1101/565358 — molecular biology — Posted on 2019-06-02

3124 Achieving reproducibility and accuracy in cancer mutation detection with whole-genome and whole-exome sequencing

Somatic Mutation Working Group of SEQC2 Consortium, ; Xiao, W.

10.1101/626440 — genomics — Posted on 2019-06-02

3125 Hyppo-X: A Scalable Exploratory Framework for Analyzing Complex Phenomics Data

Kamruzzaman, M.; Kalyanaraman, A.; Krishnamoorthy, B.; Hey, S.; Schnable, P. S.

10.1101/159954 — bioinformatics — Posted on 2019-06-02

3126 Oxazepam and cognitive reappraisal: a randomised experiment

Nilsonne, G.; Tamm, S.; Golkar, A.; Olsson, A.; Sörman, K.; Howner, K.; Kristiansson, M.; Ingvar, M.; Petrovic, P.

10.1101/656355 — neuroscience — Posted on 2019-06-02

3127 A Systems Biology perspective of Dynamical Patterning Modules in the transition to multicellularity: lessons from an aggregative bacteria

Guzman, A.; Arias Del Angel, J. A.; Rivera-Yoshida, N.; Benitez, M.; Franci, A.

10.1101/655381 — systems biology — Posted on 2019-06-02

3128 Analysis of Nucleotide Pools in Bacteria Using HPLC-MS in HILIC Mode

Zbornikova, E.; Knejzlik, Z.; Hauryliuk, V.; Krasny, L.; Rejman, D.

10.1101/655258 — microbiology — Posted on 2019-06-02

3129 Gap junctions in the C. elegans nervous system regulate ageing and lifespan

Vladis, N. A.; Fischer, K. E.; Digalaki, E.; Marcu, D.-C.; Nakos Bimpos, M.; Greer, P.; Ayres, A. I.; Li, Q.; Busch, K. E.

10.1101/657817 — physiology — Posted on 2019-06-02

3130 A VERSATILE ROBOTIC PLATFORM FOR THE DESIGN OF NATURAL, THREE-DIMENSIONAL REACHING AND GRASPING TASKS IN MONKEYS

Barra, B.; Badi, M.; Perich, M. G.; Conti, S.; Salehian, S. S. M.; Moreillon, F.; Wurth, S.; Kaeser, M.; Passeraub, P.; Milekovic, T.; Billard, A.; Micera, S.; Capogrosso, M.

10.1101/653840 — neuroscience — Posted on 2019-06-02

3131 Functional connectivity strength within the auditory forebrain is altered by song learning and predicts song stereotypy in developing male zebra finches

Layden, E. A.; Schertz, K. E.; Berman, M. G.; London, S. E.

10.1101/657825 — neuroscience — Posted on 2019-06-02

3132 Affective Pavlovian motivation is enhanced in obesity susceptible populations; implications for incentive motivation in obesity

Derman, R. C.; Ferrario, C.

10.1101/657833 — animal behavior and cognition — Posted on 2019-06-02

3133 Action information contributes to metacognitive decision-making

Wokke, M. E.; Achoui, D.; Cleeremans, A.

10.1101/657957 — animal behavior and cognition — Posted on 2019-06-02

3134 Metastable neural dynamics underlies cognitive performance across multiple behavioural paradigms

Alderson, T. H.; Coyle, D.; Maguire, L.; Bokde, A. L. H.; Kelso, J. A. S.

10.1101/657569 — neuroscience — Posted on 2019-06-02

3135 Microstructural plasticity in the bilingual brain

Luo, D.; Kwok, V. P. Y.; Li, P.; Liu, Q.; Li, W.; Yang, Y.; Zhou, K.; Xu, M.; Gao, J. H.; Tan, L. H.

10.1101/657932 — neuroscience — Posted on 2019-06-02

3136 High-throughput transmission electron microscopy with automated serial sectioning

Graham, B. J.; Hildebrand, D. G. C.; Kuan, A. T.; Maniates-Selvin, J. T.; Thomas, L. A.; Shanny, B. L.; Lee, W.-C. A.

10.1101/657346 — neuroscience — Posted on 2019-06-02

3137 Genetic background modifies CNS-mediated sensorimotor decline in the AD-BXD mouse population

O'Connell, K. M. S.; Ouellette, A. R.; Neuner, S. M.; Dunn, A. R.; Kaczorowski, C. C.

10.1101/657122 — neuroscience — Posted on 2019-06-02

3138 Glycogen metabolism jump-starts photosynthesis through the oxidative pentose phosphate pathway (OPPP) in cyanobacteria

Shinde, S.; Singapuri, S.; Zhang, X.; Kalra, I.; Liu, X.; Morgan-Kiss, R.; Wang, X.

10.1101/657304 — plant biology — Posted on 2019-06-02

3139 Inhibition stabilization is a widespread property of cortical networks

Sanzeni, A. H.; Akitake, B.; Goldbach, H. C.; Leedy, C. E.; Brunel, N.; Histed, M. H.

10.1101/656710 — neuroscience — Posted on 2019-06-02

3140 Revisiting the reduction of stochastic models of genetic feedback loops with fast promoter switching

Holehouse, J.; Grima, R.

10.1101/657718 — systems biology — Posted on 2019-06-02

3141 Neanderthal-Denisovan ancestors interbred with a distantly-related hominin

Rogers, A. R.; Harris, N. S.; Achenbach, A. A.

10.1101/657247 — evolutionary biology — Posted on 2019-06-02

3142 micrIO: An Open-Source Autosampler and Fraction Collector for Automated Microfluidic Input-Output

Longwell, S. A.; Fordyce, P. M.

10.1101/655324 — bioengineering — Posted on 2019-06-02

3143 A feedback loop of conditionally stable circuits drives the cell cycle from checkpoint to checkpoint

Deritei, D.; Rozum, J. C.; Ravasz Regan, E.; Albert, R.

10.1101/654863 — systems biology — Posted on 2019-06-02

3144 Minimum epistasis interpolation for sequence-function relationships

Zhou, J.; McCandlish, D. M.

10.1101/657841 — bioinformatics — Posted on 2019-06-02

3145 Enriched G-quadruplexes on the Drosophila Male X Chromosome Function as Insulators of Dosage Compensation Complex

Qian, S.-H.; Chen, L.; Chen, Z.-X.

10.1101/656538 — evolutionary biology — Posted on 2019-06-02

3146 Repurposing a macromolecular machine: Architecture and evolution of the F7 chemosensory system

Ortega, D. R.; Subramanian, P.; Mann, P.; Kjaer, A.; Chen, S.; Watts, K. J.; Pirbadian, S.; Collins, D. A.; Kooger, R.; Kalyuzhnaya, M. G.; Ringgaard, S.; Briegel, A.; Jensen, G. J.

10.1101/653600 — microbiology — Posted on 2019-06-02

3147 Towards best practice in cancer mutation detection with whole-genome and whole-exome sequencing

Somatic Mutation Working Group of SEQC2 Consortium, ; Xiao, W.

10.1101/626440 — genomics — Posted on 2019-06-02

3148 Unique and redundant roles of SOX2 and SOX17 in regulating the germ cell tumour fate

Jostes, S.; Fellermeyer, M.; Merges, G.; Kristiansen, G.; Nettersheim, D.; Schorle, H.

10.1101/643114 — cancer biology — Posted on 2019-06-02

3149 Exponentially few RNA structures are designable

Yao, H.-T.; Chauve, C.; Regnier, M.; Ponty, Y.

10.1101/652313 — bioinformatics — Posted on 2019-06-02

3150 Enriched G-quadruplexes on the Drosophila Male X Chromosome Function as Insulators of Dosage Compensation Complex

Qian, S.-H.; Chen, L.; Chen, Z.-X.

10.1101/656538 — evolutionary biology — Posted on 2019-06-02

3151 Patch-DCA: Improved Protein Interface Prediction by utilizing Structural Information and Clustering DCA scores

Vajdi, A.; Zarringhalam, K.; Haspel, N.

10.1101/656074 — bioinformatics — Posted on 2019-06-02

3152 HER2 Cancer Protrusion Growth Signaling Regulated by Unhindered, Localized Filopodial Dynamics

Lam, W. Y.; Wang, Y.; Mostofian, B.; Jorgens, D.; Kwon, S.; Chin, K.; Carpenter, M.; Jacob, T.; Heiser, K.; Agrawal, A.; Wang, J.; Nan, X.; Chang, Y. H.; Zuckerman, D. M.; Gray, J.; Bruchez, M.; Lidke, K.; Vu, T. Q.

10.1101/654988 — cancer biology — Posted on 2019-06-02

3153 General and robust covalently linked graphene oxide affinity grids for high-resolution cryo-EM

Wang, F.; Liu, Y.; Yu, Z.; Li, S.; Cheng, Y.; Agard, D.

10.1101/657411 — biophysics — Posted on 2019-06-02

3154 Generalized locomotion of brittle stars with a flexible number of arms

Wakita, D.; Kagaya, K.; Aonuma, H.

10.1101/616383 — animal behavior and cognition — Posted on 2019-06-02

3155 The Mastery Rubric for Bioinformatics: supporting design and evaluation of career-spanning education and training

Tractenberg, R. E.; Lindvall, J. M.; Attwood, T. K.; Via, A.

10.1101/655456 — scientific communication and education — Posted on 2019-06-02

3156 TGFβ drives mitochondrial dysfunction in peripheral blood NK cells during metastatic breast cancer

Slattery, K.; Zaiatz-Bittencourt, V.; Woods, E.; Brennan, K.; Marks, S.; Chew, S.; Conroy, M.; Goggin, C.; Kennedy, J.; Finlay, D. K.; Gardiner, C. M.

10.1101/648501 — immunology — Posted on 2019-06-02

3157 Automated Threshold Selection for Cryo-EM Density Maps

Pfab, J.; Si, D.

10.1101/657395 — bioinformatics — Posted on 2019-06-02

3158 Extracellular matrix micropatterning technology for whole cell cryogenic electron microscopy studies

Engel, L.; Gaietta, G.; Dow, L. P.; Swift, M. F.; Pardon, G.; Volkmann, N.; Weis, W. I.; Hanein, D.; Pruitt, B. L.

10.1101/657072 — bioengineering — Posted on 2019-06-02

3159 Intracellular dynamics of CA3 pyramidal cells supporting sparse coding during theta and large irregular activity

Malezieux, M.; Kees, A. L.; Mulle, C.

10.1101/652461 — neuroscience — Posted on 2019-06-02

3160 Genetic screening for single-cell variability modulators driving therapy resistance

Torre, E. A.; Arai, E.; Bayatpour, S.; Beck, L. E.; Emert, B. L.; Shaffer, S. M.; Mellis, I. A.; Budinich, K. A.; Weeraratna, A.; Shi, J.; Raj, A.

10.1101/638809 — cell biology — Posted on 2019-06-02

3161 High Spatial Resolution Ambient Ionization Mass Spectrometry Imaging Using Microscopy Image Fusion

Chen, C.-L.; Lin, L.-E.; Huang, Y.-C.; Chung, H.-H.; Chen, K.-C.; Peng, Y.-J.; Lin, C.-W.; Ding, S.-T.; Shen, T.-L.; Hsu, C.-C.

10.1101/657494 — bioinformatics — Posted on 2019-06-02

3162 Brain-predicted age difference score is related to specific cognitive functions: A multi-site replication analysis

Boyle, R.; Jollans, L.; Rueda-Delgado, L. M.; Rizzo, R.; Yener, G. G.; McMorrow, J. P.; Knight, S. P.; Carey, D.; Robertson, I. H.; Emek-Savas, D. D.; Stern, Y.; Kenny, R. A.; Whelan, R.

10.1101/652867 — neuroscience — Posted on 2019-06-02

3163 The Avocado Genome Informs Deep Angiosperm Phylogeny, Highlights Introgressive Hybridization, and Reveals Pathogen Influenced Gene Space Adaptation

10.1101/654285 — genomics — Posted on 2019-06-02

3164 Toward computational design of protein crystals with improved resolution

Jeliazkov, J. R.; Robinson, A. C.; Garcia-Moreno E., B.; Berger, J. M.; Gray, J. J.

10.1101/657262 — biophysics — Posted on 2019-06-02

3165 OptiJ: Open-source optical projection tomography of large organ samples

Vallejo Ramirez, P. P.; Zammit, J.; Vanderpoorten, O.; Riche, F.; Ble, F.-X.; Zhou, X.-H.; Spiridon, B. F.; Valentine, C.; Spasov, S. P.; Oluwasanya, P. W.; Goodfellow, G.; Fantham, M. J.; Siddiqui, O.; Alimagham, F.; Robbins, M.; Stretton, A.; Simatos, D.; Hadeler, O.; Rees, E. J.; Ströhl, F.; Laine, R. F.; Kaminski, C. F.

10.1101/656488 — biophysics — Posted on 2019-06-02

3166 An Accurate Bioinformatics Tool For Anti-Cancer Peptide Generation Through Deep Learning Omics

Kaushik, A. C.; Li, M.; Wei, D.-Q.

10.1101/654277 — bioinformatics — Posted on 2019-06-02

3167 Multi-ethnic genome-wide association study of decomposed cardioelectric phenotypes illustrates strategies to identify and characterize evidence of shared genetic effects for complex traits

Baldassari, A. R.; Sitlani, C. M.; Highland, H. M.; Arking, D. R.; Buyske, S.; Darbar, D.; Gondalia, R.; Graff, M. R.; Guo, X. R.; Heckbert, S. R.; Hindorff, L. A.; Hodonsky, C. J.; Ida Chen, Y.-D.; Kaplan, R. C.; Peters, U.; Post, W.; Reiner, A. P.; Rotters, J.; Seyerle, A. A.; Shohet, R. V.; Sotoodehnia, N.; Tao, R.; Taylor, K. D.; Wojcik, G. L.; Yao, J. D.; Kenny, E. D.; Lin, H. J.; Soliman, E. Z.; Whitsel, E. A.; North, K. E.; Kooperberg, C.; Avery, C. L.

10.1101/654012 — epidemiology — Posted on 2019-06-02

3168 PI3K/AKT inhibition in tumor propagating cells of DLBCL reverses R-CHOP resistance by destabilizing SOX2

Chen, J.; Ge, X.; Zhang, W.; Ding, P.; Du, Y.; Wang, Q.; Li, L.; Fang, L.; Sun, Y.; Zhang, P.; Zhou, Y.; Zhang, L.; Lv, X.; Li, L.; Zhang, X.; Zhang, Q.; Xue, K.; Gu, H.; Lei, Q.; Wong, J.; Hu, W.

10.1101/657445 — cancer biology — Posted on 2019-06-02

3169 Occupancy distributions of membrane proteins in heterogeneous liposome populations

Cliff, L.; Chadda, R.; Robertson, J. L.

10.1101/657098 — biophysics — Posted on 2019-06-02

3170 Pervasive off-target and double-stranded DNA nicking by CRISPR-Cas12a

Murugan, K.; Seetharam, A.; Severin, A. J.; Sashital, D. G.

10.1101/657791 — biochemistry — Posted on 2019-06-02

3171 Deep learning enables therapeutic antibody optimization in mammalian cells by deciphering high-dimensional protein sequence space

Mason, D. M.; Friedensohn, S.; Weber, C. R.; Jordi, C.; Wagner, B.; Meng, S.; Gainza, P.; Correia, B.; Reddy, S. T.

10.1101/617860 — synthetic biology — Posted on 2019-06-02

3172 Electrocorticographic dissociation of alpha and beta rhythmic activity in the human sensorimotor system

Stolk, A.; Brinkman, L.; Vansteensel, M. J.; Aarnoutse, E.; Leijten, F. S. S.; Dijkerman, C. H.; Knight, R. T.; de Lange, F. P.; Toni, I.

10.1101/636241 — neuroscience — Posted on 2019-06-02

3173 Preserved wake-dependent cortical excitability dynamics predict cognitive fitness beyond age-related brain alterations

Van Egroo, M.; Narbutas, J.; Chylinski, D.; Villar Gonzalez, P.; Ghaemmaghami, P.; Muto, V.; Schmidt, C.; Gaggioni, G.; Besson, G.; Pepin, X.; Tezel, E.; Marzoli, D.; Le Goff, C.; Cavalier, E.; Luxen, A.; Salmon, E.; Maquet, P.; Bahri, M. A.; Phillips, C.; Bastin, C.; Collette, F.; Vandewalle, G.

10.1101/644096 — neuroscience — Posted on 2019-06-02

3174 Development and External Validation of the Acute COPD Exacerbation Prediction Tool (ACCEPT)

Adibi, A.; Sin, D. D.; Safari, A.; Johnson, K. M.; Aaron, S.; FitzGerald, J. M.; Sadatsafavi, M.

10.1101/651901 — epidemiology — Posted on 2019-06-02

3175 Metronomic capecitabine as an immune modulator in glioblastoma patients reduces myeloid-derived suppressor cells

Peereboom, D. M.; Alban, T. J.; Grabowski, M. M.; Alvarado, A. G.; Otvos, B.; Bayik, D.; Roversi, G. A.; McGraw, M.; Huang, P.; Mohammadi, A.; Kornblum, H. I.; Ahluwalia, M. S.; Vogelbaum, M. A.; Lathia, J.

10.1101/655688 — clinical trials — Posted on 2019-06-02

3176 Neurocognitive mechanisms of d-cycloserine augmented single-session exposure therapy for anxiety

Reinecke, A.; Nickless, A.; Browning, M.; Harmer, C.

10.1101/615757 — clinical trials — Posted on 2019-06-02

3177 Unconventional cell division cycles from marine-derived yeasts

Mitchison-Field, L. M. Y.; Vargas-Muniz, J. M.; Stormo, B. M.; Vogt, E. J. D.; Van Dierdonck, S.; Ehrlich, C.; Lew, D.; Field, C.; Gladfelter, A.

10.1101/657254 — cell biology — Posted on 2019-06-02

3178 CoMM-S2: a collaborative mixed model using summary statistics in transcriptome-wide association studies

Yang, Y.; Shi, X.; Jiao, Y.; Huang, J.; Chen, M.; Zhou, X.; Sun, L.; Lin, X.; Yang, C.; Liu, J.

10.1101/652263 — bioinformatics — Posted on 2019-06-02

3179 Deep Lipidomics and Molecular Imaging of Unsaturated Lipid Isomers: A Universal Strategy Initiated by mCPBA Epoxidation

Kuo, T.-H.; Chung, H.-H.; Chang, H.-Y.; Wang, M.-Y.; Shen, T.-L.; Hsu, C.-C.

10.1101/649103 — biochemistry — Posted on 2019-06-02

3180 A broad-host-range CRISPRi toolkit for silencing gene expression in Burkholderia

Hogan, A. M.; Rahman, A. S. M. Z.; Lightly, T. L.; Cardona, S. T.

10.1101/618413 — microbiology — Posted on 2019-06-02

3181 DYRK2 activates heat shock factor 1 promoting resistance to proteotoxic stress in triple-negative breast cancer

Moreno, R.; Banerjee, S.; Jackson, A. W.; Quinn, J.; Baillie, G.; Dixon, J. E.; Dinkova-Kostova, A. T.; Edwards, J.; de la Vega, L.

10.1101/633560 — cancer biology — Posted on 2019-06-02

3182 Power, positive predictive value, and sample size calculations for random field theory-based fMRI inference

Ostwald, D.; Schneider, S.; Bruckner, R.; Horvath, L.

10.1101/613331 — neuroscience — Posted on 2019-06-01

3183 Lapses in perceptual judgments reflect exploration

Pisupati, S.; Chartarifsky-Lynn, L.; Khanal, A.; Churchland, A. K.

10.1101/613828 — neuroscience — Posted on 2019-06-01

3184 High risk glioblastoma cells revealed by machine learning and single cell signaling profiles

Leelatian, N.; Sinnaeve, J.; Mistry, A. M.; Barone, S. M.; Diggins, K. E.; Greenplate, A. R.; Weaver, K. D.; Thompson, R. C.; Chambless, L. B.; Mobley, B. C.; Ihrie, R. A.; Irish, J. M.

10.1101/632208 — cancer biology — Posted on 2019-06-01

3185 Deconvolution of Transcriptional Networks Identifies TCF4 as a Master Regulator in Schizophrenia

Doostparast Torshizi, A.; Armoskus, C.; Zhang, H.; Forrest, M. P.; Zhang, S.; Souaiaia, T.; Evgrafov, O. V.; Knowles, J. A.; Duan, J.; Wang, K.

10.1101/133363 — neuroscience — Posted on 2019-06-01

3186 Transcriptome stability profiling identifies novel and functional MIRNA targets in melanoma cells

Joshi, P.; Seki, T.; Kitamura, S.; Bergano, A.; Lee, B.; Perera, R. J.

10.1101/555540 — cancer biology — Posted on 2019-06-01

3187 Geometric principles of second messenger dynamics in dendritic spines

Cugno, A.; Bartol, T. M.; Sejnowski, T. J.; Iyengar, R.; Rangamani, P.

10.1101/444489 — biophysics — Posted on 2019-06-01

3188 TIMP-1 attenuates the development of inflammatory pain through MMP-dependent and receptor-mediated cell signaling mechanisms

Knight, B. E.; Kozlowski, N.; Havelin, J.; King, T.; Crocker, S. J.; Young, E. E.; Baumbauer, K.

10.1101/540724 — neuroscience — Posted on 2019-06-01

3189 The development, recognition, and learning mechanisms of an animal-like neural network

Qi, F.; Wu, W.

10.1101/535724 — neuroscience — Posted on 2019-06-01

3190 Region-specific regulation of stem cell-driven regeneration in tapeworms

Rozario, T.; Quinn, E. B.; Wang, J.; Davis, R. E.; Newmark, P. A.

10.1101/495234 — developmental biology — Posted on 2019-06-01

3191 Creative Brains Show Reduced Mid Frontal Theta

Wokke, M. E.; Ridderinkhof, K. R.; Padding, L.

10.1101/370494 — animal behavior and cognition — Posted on 2019-06-01

3192 Short-Term Synaptic Dynamics Control the Activity Phase of Neurons in an Oscillatory Network

Martinez, D.; Anwar, H.; Bose, A.; Bucher, D.; Nadim, F.

10.1101/578617 — neuroscience — Posted on 2019-06-01

3193 Continuous theta burst TMS of area MT+ impairs attentive motion tracking.

Chakraborty, A.; Tran, T. T.; Silva, A. E.; Giaschi, D.; Thompson, B.

10.1101/601807 — neuroscience — Posted on 2019-06-01

3194 TgCentrin2 is required for invasion and replication in the human parasite Toxoplasma gondii

Leung, J. M.; Liu, J.; Wetzel, L. A.; Hu, K.

10.1101/491316 — cell biology — Posted on 2019-06-01

3195 A rotifer-derived paralytic compound prevents transmission of schistosomiasis to a mammalian host

Gao, J.; Yang, N.; Lewis, F. A.; Yau, P.; Collins, J. J.; Sweedler, J. V.; Newmark, P. A.

10.1101/426999 — biochemistry — Posted on 2019-06-01

3196 Transcriptomic response to divergent selection for flowering time in maize reveals convergence and key players of the underlying gene regulatory network

Tenaillon, M. I.; Seddiki, K.; Mollion, M.; Le Guilloux, M.; Marchadier, E.; Ressayre, A.; Dillmann, C.

10.1101/461947 — plant biology — Posted on 2019-06-01

3197 Pyridox(am)ine 5’-phosphate oxidase deficiency induces seizures in Drosophila melanogaster

Chi, W.; Iyengar, A.; Albersen, M.; Bosma, M.; Verhoeven-Duif, N. M.; Wu, C.-F.; Zhuang, X.

10.1101/580050 — neuroscience — Posted on 2019-06-01

3198 Fitness dependence of the fixation-time distribution for evolutionary dynamics on graphs

Hathcock, D.; Strogatz, S. H.

10.1101/496380 — evolutionary biology — Posted on 2019-06-01

3199 High-throughput quantitative detection of basal autophagy and autophagic flux using image cytometry

Senthilkumar, G.; Skiba, J. H.; Kimple, R. J.

10.1101/590513 — cell biology — Posted on 2019-06-01

3200 Real-time computation of the TMS-induced electric field in a realistic head model

Stenroos, M.; Koponen, L. M.

10.1101/547315 — neuroscience — Posted on 2019-06-01

3201 Estimation of Brain Age Delta from Brain Imaging

Smith, S. M.; Vidaurre, D.; Alfaro-Almagro, F.; Nichols, T. E.; Miller, K. L.

10.1101/560151 — neuroscience — Posted on 2019-06-01

3202 Spectral Graph Theory of Brain Oscillations

Raj, A.; Cai, C.; Xie, X.; Palacios, E.; Owen, J.; Mukherjee, P.; Nagarajan, S.

10.1101/589176 — neuroscience — Posted on 2019-06-01

3203 Structural basis of the differential binding of engineered knottins to integrins αVβ3 and α5β1

van Agthoven, J. F.; Shams, H.; Cochran, F. V.; Alonso, J. L.; Kintzing, J. R.; Grakami, K.; Adair, B. D.; Xiong, J.-P.; Mofrad, M. R.; Cochran, J. R.; Arnaout, M. A.

10.1101/565358 — molecular biology — Posted on 2019-06-01

3204 Holding the arm still through integration of cortical commands

Albert, S. T.; Hadjiosif, A.; Jang, J.; Zimnik, A.; Churchland, M. M.; Krakauer, J. W.; Shadmehr, R.

10.1101/556282 — neuroscience — Posted on 2019-06-01

3205 beta-actin mRNA interactome mapping by proximity biotinylation

Mukherjee, J.; Hermesh, O.; Eliscovich, C.; Nalpas, N.; Franz-Wachtel, M.; Macek, B.; Jansen, R.-P.

10.1101/405589 — cell biology — Posted on 2019-06-01

3206 Decoupling of timescales reveals sparse convergent CPG network in the adult spinal cord

Radosevic, M.; Willumsen, A.; Petersen, P. C.; Linden, H.; Vestergaard, M.; Berg, R. W.

10.1101/402917 — neuroscience — Posted on 2019-06-01

3207 USP9X deubiquitylates DVL2 to regulate WNT pathway specification

Nielsen, C. P.; Jernigan, K. K.; Diggins, N.; Webb, D.; MacGurn, J. A.

10.1101/289595 — cell biology — Posted on 2019-06-01

3208 Perceived Barriers in Accessing Sexual and Reproductive Health Services for Youth in Lao People’s Democratic Republic

Thongmixay, s.; Essink, D. R.; Greeuw, T. d.; Vongxay, V.; Sychareun, V.; Broerse, J. E. W.

10.1101/656843 — scientific communication and education — Posted on 2019-06-01

3209 Genotyping structural variants in pangenome graphs using the vg toolkit

Hickey, G.; Heller, D.; Monlong, J.; Sibbesen, J. A.; Siren, J.; Eizenga, J.; Dawson, E.; Garrison, E.; Novak, A.; Paten, B.

10.1101/654566 — bioinformatics — Posted on 2019-06-01

Archive, 2019-06