bioRxiv directory

Park, G.; Mustjoki, S.; Kim, D.; Huuhtanen, J.; Lundgren, S.; Khajuria, R. K.; Hurtado, A. M.; Munoz-Calleja, C.; Cardenoso, L.; Gomez-Garcia de Soria, V.; Chen-Liang, T. H.; Eldfors, S.; Ellonen, P.; Hannula, S.; Bruck, O.; Kreutzman, A.; Salmenniemi, U.; Lonnberg, T.; Jerez, A.; Itala-Remes, M.; Keranen, M. A. I.

10.1101/747196 — immunology — Posted on 2019-08-31

13 A versatile ES cell-based melanoma mouse modeling platform

Bok, I.; Vera, O.; Xu, X.; Jasani, N.; Nakamura, K.; Reff, J.; Nenci, A.; Gonzalez, J. G.; Karreth, F. A.

10.1101/658260 — cancer biology — Posted on 2019-08-31

14 Computing 3D chromatin configurations from contact probability maps by Inverse Brownian Dynamics

Kumari, K.; Duenweg, B.; Padinhateeri, R.; Jagadeeshan, R. P.

10.1101/751917 — biophysics — Posted on 2019-08-31

15 An Automated Addressable Microfluidics Device for Minimally-Invasive Manipulation of Cells and Fluids within Living Cultures

Tong, A.; Pham, L. Q.; Shah, V.; Naik, A.; Abatemarco, P.; Voronov, R.

10.1101/688424 — bioengineering — Posted on 2019-08-31

16 Loss of the Krüppel-like factor 4 tumor suppressor is associated with epithelial-mesenchymal transition in colorectal cancer

Agbo, K. C.; Huang, J. Z.; Ghaleb, A. M.; Williams, J. L.; Shroyer, K. R.; Bialkowska, A. B.; Yang, V. W.

10.1101/743443 — cancer biology — Posted on 2019-08-31

17 Atrous Convolution with Transfer Learning for Skin Lesions Classification

Ratul, M. A. R.; Mozaffari, M. H.; Parimbelli, E.; Lee, W.

10.1101/746388 — cancer biology — Posted on 2019-08-31

18 Asymptotic Behavior of the Direction-Averaged Diffusion-Weighted MRI Signal using Different B-Tensor Encoding Schemes

Afzali, M.; Aja-Fernandez, S.; Jones, D. K.

10.1101/722421 — bioengineering — Posted on 2019-08-31

19 Reading-out task variables as a low-dimensional reconstruction of neural spike trains in single trials.

Koren, V.; Andrei, A.; Hu, M.; Dragoi, V.; Obermayer, K.

10.1101/643668 — neuroscience — Posted on 2019-08-31

20 Marketplace Shrimp Mislabeling in North Carolina

Korzik, M.; Austin, H.; Cooper, B.; Jasperse, C.; Tan, G.; Richards, E.; Spencer, E.; Steinwand, B.; Fodire, F. J.; Bruno, J.

10.1101/734376 — ecology — Posted on 2019-08-31

21 Functional connectivity changes with rapid remission from severe major depressive disorder

Xiao, X.; Bentzley, B.; Cole, E. J.; Tischler, C.; Stimpson, K. H.; Duvio, D.; Bishop, J. H.; DeSouza, D. D.; Schatzberg, A.; Keller, C.; Sudheimer, K.; Williams, N. R.

10.1101/672154 — clinical trials — Posted on 2019-08-31

22 Cell fitness is an omniphenotype

Jacobs, N. C.; Park, J. W.; Peterson, T. R.

10.1101/487157 — systems biology — Posted on 2019-08-31

23 Genomic hypervariability of phage Andromeda is unique among known dsDNA viruses

Magill, D. J.; Skvortsov, T.; Kulakov, L. A.

10.1101/619015 — microbiology — Posted on 2019-08-31

24 Mobile Brain/Body Imaging of cognitive-motor impairment in multiple sclerosis: deriving EEG-based neuro-markers during a dual-task walking study

De Sanctis, P.; Malcolm, B. R.; Mabie, P. C.; Francisco, A. A.; Mowrey, W. B.; Joshi, S.; Molholm, S.; Foxe, J. J.

10.1101/743328 — neuroscience — Posted on 2019-08-31

25 Nanoscale distribution of nuclear sites analyzed by superresolution STED-ICCS

Oneto, M.; Scipioni, L.; Sarmento, M. J.; Cainero, I.; Pelicci, S.; Furia, L.; Pelicci, P.; Dellino, G. I.; Bianchini, P.; Faretta, M. R.; Gratton, E.; Diaspro, A.; Lanzano, L.

10.1101/753228 — biophysics — Posted on 2019-08-31

26 Migrant semipalmated sandpipers (Calidris pusilla) have over four decades steadily shifted towards safer stopover locations

Hope, D. D.; Lank, D. B.; Smith, P. A.; Paquet, J.; Ydenberg, R. C.

10.1101/741413 — animal behavior and cognition — Posted on 2019-08-31

27 Receptor-Like Kinase Phosphorylation of Arabidopsis Heterotrimeric G-Protein Gα - Subunit AtGPA1

Jia, H.; Song, G.; Werth, E. G.; Walley, J. W.; Hicks, L. M.; Jones, A. M.

10.1101/752337 — plant biology — Posted on 2019-08-31

28 A Metagenomics - Based Diagnostic Approach for Central Nervous System Infections in Hospital Acute Care Setting

Hasan, M. R.; Sundararaju, S.; Tang, P.; Tsui, K. M.; Perez-Lopez, A.; Janahi, M.; Tan, R.; Tilley, P.

10.1101/752618 — pathology — Posted on 2019-08-31

29 Albumin inhibits the activation of hepatic stellate cells by suppressing TGF-β/Smad3 signaling via IL-1β

Oh, J. S.; Park, J. H.; Kim, J.; Choi, S.-Y.; Cha, K.; Park, H.; Lee, J.-E.; Lee, B.; Moon, J. W.; Park, S.-H.; Lee, J. M.; Lee, H.

10.1101/753152 — molecular biology — Posted on 2019-08-31

30 Manner of death and demographic effects on microbial community composition in organs of the human cadaver

Lutz, H. L.; Vangelatos, A. L.; Gottel, N.; Speed, E.; Osculati, A.; Visona, S.; Finley, S. J.; Tuomisto, S.; Karhunen, P. J.; Gilbert, J. A.; Javan, G. T.

10.1101/752576 — microbiology — Posted on 2019-08-31

31 EXP1 is required for organization of the intraerythrocytic malaria parasite vacuole

Nessel, T.; Beck, J. M.; Rayatpisheh, S.; Jami-Alahmadi, Y.; Wohlschlegel, J. A.; Goldberg, D. E.; Beck, J. R.

10.1101/752634 — microbiology — Posted on 2019-08-31

32 Modulation of de novo heme production in Toxoplasma essentially controls its infection.

Bergmann, A.; Floyd, K.; Key, M.; Dameron, C.; Rees, K. C.; Whitehead, D. C.; Hamza, I.; Dou, Z.

10.1101/753863 — microbiology — Posted on 2019-08-31

33 Leveraging host metabolism for bisdemethoxycurcumin production in Pseudomonas putida

Incha, M. R.; Thompson, M. G.; Blake-Hedges, J. M.; Pearson, A. N.; Schmidt, M.; Deutschbauer, A.; Keasling, J. D.

10.1101/753889 — microbiology — Posted on 2019-08-31

34 Intra-genus metabolic diversity facilitates co-occurrence of multiple Ferrovum species at an acid mine drainage site

Grettenberger, C. L.; Havig, J.; Hamilton, T.

10.1101/751859 — microbiology — Posted on 2019-08-31

35 Re-annotation of the Theileria parva genome refines 53% of the proteome and uncovers essential components of N-glycosylation, a conserved pathway in many organisms

Tretina, K.; Pelle, R.; Orvis, J.; Gotia, H. T.; Ifeonu, O. O.; Kumari, P.; Palmateer, N. C.; Iqbal, S. B.; Fry, L.; Nene, V. M.; Daubenberger, C.; Bishop, R. P.; Silva, J. C.

10.1101/749366 — genomics — Posted on 2019-08-31

36 A comparative genomic analysis of the barley pathogen Pyrenophora teres f. teres identifies sub-telomeric regions as drivers of virulence

Wyatt, N. A.; Richards, J. K.; Brueggeman, R. S.; Friesen, T. L.

10.1101/753202 — genomics — Posted on 2019-08-31

37 Lung, spleen and oesophagus tissue remains stable for scRNAseq in cold preservation

Madissoon, E.; Wilbrey-Clark, A. L.; Miragaia, R. J.; Saeb-Parsy, K.; Mahbubani, K. T.; Georgakopoulos, N.; Harding, P.; Polanski, K.; Nowicki-Osuch, K.; Fitzgerald, R. C.; Loudon, K. W.; Ferdinand, J. R.; Clatworthy, M. R.; Tsingene, A.; van Dongen, S.; Dabrowska, M.; Patel, M.; Stubbington, M. J.; Teichmann, S.; Stegle, O.; Meyer, K. B.

10.1101/741405 — genomics — Posted on 2019-08-31

38 A homozygous hypomorphic BRCA2 variant causes primary ovarian insufficiency without cancer or Fanconi anemia traits.

Caburet, S.; Heddar, A.; Dardillac, E.; Creux, H.; Lambert, M.; Messiaen, S.; Tourpin, S.; Livera, G.; Lopez, B. S.; Misrahi, M.

10.1101/751644 — genetics — Posted on 2019-08-31

39 Diet-responsive Transcriptional Regulation of Insulin in a Single Neuron Controls Systemic Metabolism

Handley, A.; Wu, Q.; Sherry, T.; Pocock, R.

10.1101/751339 — genetics — Posted on 2019-08-31

40 A genome-wide genetic pleiotropy approach identified shared loci between multiple system atrophy and inflammatory bowel disease

Shadrin, A. A.; Mucha, S.; Ellinghaus, D.; Makarious, M. B.; Blauwendraat, C.; Sreelatha, A. A.; Heras-Garvin, A.; Ding, J.; Hammer, M.; Foubert-Samier, A.; Meissner, W. G.; Rascol, O.; Pavy-Le Traon, A.; Frei, O. A.; O'Connell, K. S.; Bahrami, S.; Schreiber, S.; Lieb, W.; Müller-Nuraysid, M.; Arnold, A.; Homuth, G.; Schmidt, C. O.; Nöthen, M. M.; Hoffmann, P.; Gieger, C.; European Multiple System Atrophy Study Group, ; Gibbs, J. R.; Franke, A.; Hardy, J.; Wenning, G.; Stefanova, N.; Gasser, T.; Singleton, A.; Houlden, H.; Scholz, S. W.; Andreassen, O. A.; Sharma, M.

10.1101/751354 — genetics — Posted on 2019-08-31

Kukhtar, D.; Rubio-Pena, K.; Serrat, X.; Ceron, J.

10.1101/752956 — genetics — Posted on 2019-08-31

42 Genome Scans for Selection and Introgression based on k-nearest Neighbor Techniques

Pfeifer, B.; Alachiotis, N.; Pavlidis, P.; Schimek, M. G.

10.1101/752758 — evolutionary biology — Posted on 2019-08-31

43 High throughput, high fidelity genotyping and de novo discovery of allelic variants at the self-incompatibility locus in natural populations of Brassicaceae from short read sequencing data

Genete, M.; Castric, V.; Vekemans, X.

10.1101/752717 — evolutionary biology — Posted on 2019-08-31

44 Why Montane Anolis Lizards Are Moving Downhill While Puerto Rico Warms

Battey, C. J.; Otero, L. M.; Gorman, G. C.; Hertz, P. E.; Lister, B. C.; Garcia, A.; Burrowes, P. A.; Huey, R. B.

10.1101/751941 — ecology — Posted on 2019-08-31

45 Gene networks in cancer are biased by aneuploidies and sample impurities

Schubert, M.; Colome-Tatche, M.; Foijer, F.

10.1101/752816 — bioinformatics — Posted on 2019-08-31

46 Priors for Genotyping Polyploids

Gerard, D.; Ferrao, L. F. V.

10.1101/751784 — bioinformatics — Posted on 2019-08-31

47 CoRNeA: A pipeline to decrypt the protein-protein interaction from amino acid sequence information

Chopra, K.; Sharma, K.; Kembhavi, A.; Mande, S.; Chauhan, R.

10.1101/741280 — bioinformatics — Posted on 2019-08-31

48 Analysis of Independent Differences (AID) detects complex thermal proteome profiles independent of shape and identifies candidate panobinostat targets

Panov, A.; Gygi, S.

10.1101/751818 — bioinformatics — Posted on 2019-08-31

49 Vibrio cholerae OmpR represses the ToxR regulon in response to membrane intercalating agents that are prevalent in the human gastrointestinal tract

Kunkle, D. E.; Bina, T. F.; Bina, X. R.; Bina, J. E.

10.1101/752626 — microbiology — Posted on 2019-08-31

50 Darwinian selection analysis of the two-component system PmrAB indicates there could be lingering delay in emergence of colistin resistance in Acinetobacter baumannii

Pagal, S.; Saranathan, R.; Rani, A.; Tomar, A.; Arunkumar, K. P.; Prashanth, K.

10.1101/753665 — microbiology — Posted on 2019-08-31

51 Tudor-SN promotes early replication of dengue virus in the Aedes aegypti midgut

Merkling, S. H.; Raquin, V.; Dabo, S.; Moltini-Conclois, I.; Frangeul, L.; Varet, H.; Saleh, M. C.; LAMBRECHTS, L.

10.1101/751362 — microbiology — Posted on 2019-08-31

52 Variations of gut microbiome profile under different storage conditions and preservation periods: A multi-dimensional evaluation

Ma, J.; Sheng, L.; Xi, C.; Gu, Y.; Hong, Y.; zheng, N.; Chen, L.; Wu, G.; Li, Y.; Yan, J.; Han, R.; Li, B.; Qiu, H.; Zhong, J.; Jia, W.; Li, H.

10.1101/752584 — microbiology — Posted on 2019-08-31

53 A sample-to-report solution for taxonomic identification of cultured bacteria in the clinical setting based on nanopore sequencing

Neuenschwander, S. M.; Terrazos Miani, M. A.; Amlang, H.; Perroulaz, C.; Bittel, P.; Casanova, C.; Droz, S.; Flandrois, J.-P.; Leib, S. L.; Suter-Riniker, F.; Ramette, A.

10.1101/752774 — microbiology — Posted on 2019-08-31

54 Moderate amounts of epistasis are not evolutionarily stable in small populations

Sydykova, D. K.; LaBar, T. O.; Adami, C.; Wilke, C. O.

10.1101/752535 — evolutionary biology — Posted on 2019-08-31

55 Parallel Concerted Evolution of Ribosomal Protein Genes in Fungi and Its Adaptive Significance

Mullis, A.; Lu, Z.; Zhan, Y.; Wang, T.-Y.; Rodriguez, J.; Rajeh, A.; Chatrath, A.; Lin, Z.

10.1101/751792 — evolutionary biology — Posted on 2019-08-31

56 qtQDA: quantile transformed quadratic discriminant analysis for high-dimensional RNA-seq data

Kochan, N.; Tutuncu, G. Y.; Smyth, G. K.; Gandolfo, L. C.; Giner, G.

10.1101/751370 — bioinformatics — Posted on 2019-08-31

57 LOMDA: Linear optimization for miRNA-disease association prediction

Pech, R.

10.1101/751651 — bioinformatics — Posted on 2019-08-31

58 Parallel and Scalable Precise Clustering for Homologous Protein Discovery

Byma, S.; Dhasade, A.; Altenhoff, A. M.; Dessimoz, C.; Larus, J. R.

10.1101/751214 — bioinformatics — Posted on 2019-08-31

59 Analysis of promoter-associated chromatin interactions reveals biologically relevant candidate target genes at endometrial cancer risk loci

O'Mara, T. A.; Endometrial Cancer Association Consortium, ; Spurdle, A. B.; Glubb, D.

10.1101/751081 — genomics — Posted on 2019-08-31

60 EDEM3 modulates plasma triglyceride level through its regulation of LRP1 expression

Xu, Y.-X.; Peloso, G. M.; Nagai, T. H.; Mizoguchi, T.; Deik, A.; Bullock, K.; Lin, H.; Musunuru, K.; Yang, Q.; Vasan, R. S.; Gerszten, R. E.; Clish, C. B.; Rader, D.; Kathiresan, S.

10.1101/742353 — genetics — Posted on 2019-08-31

61 Multiple separate cases of pseudogenized meiosis genes Msh4 and Msh5 in Eurotiomycete fungi: associations with Zip3 sequence evolution and homothallism, but not Pch2 losses

Savelkoul, E.; Toll, C. D.; Benassi, N. D.; Logsdon, J. M.

10.1101/750497 — genetics — Posted on 2019-08-31

62 Genomic history and ecology of the geographic spread of rice

Gutaker, R. M.; Groen, S. C.; Bellis, E. S.; Choi, J. Y.; Pires, I. S.; Bocinsky, R. K.; Slayton, E. R.; Wilkins, O.; Castillo, C. C.; Negrao, S.; Oliveira, M. M.; Fuller, D. Q.; Guedes, J. A. d.; Lasky, J. R.; Purugganan, M. D.

10.1101/748178 — evolutionary biology — Posted on 2019-08-31

63 Regional differences in the abiotic environment contribute to genomic divergence within a wild tomato species

Gibson, M. J.; Moyle, L. C.

10.1101/744797 — evolutionary biology — Posted on 2019-08-31

64 A phylogenomic framework for Vetigastropoda (Mollusca)

Cunha, T. J.; Giribet, G.

10.1101/736447 — evolutionary biology — Posted on 2019-08-31

65 Assessing the potential of environmental DNA metabarcoding for monitoring Neotropical mammals: a case study in the Amazon and Atlantic Forest, Brazil

Guimaraes Sales, N.; da Cruz Kaizer, M.; Coscia, I.; Perkins, J.; Highlands, A.; Boubli, J.; Magnusson, W. E.; Nazareth Ferreira da Silva, M.; Benvenuto, C.; McDevitt, A.

10.1101/750414 — ecology — Posted on 2019-08-31

66 The Cannabis Multi-Omics Draft Map Project

Jenkins, C.; Orsburn, B.

10.1101/753400 — plant biology — Posted on 2019-08-31

67 Discovery of genes encoding a Streptolysin S-like toxin biosynthetic cluster in a select highly pathogenic methicillin resistant Staphylococcus aureus JKD6159 strain

Kane, T.; Carothers, K. E.; Bao, Y.; Yeo, W.-S.; Bae, T.; Park, C.; Fields, F. R.; Vu, H. M.; Hammers, D. E.; Ross, J. N.; Ploplis, V. A.; Castellino, F. J.; Lee, S. W.

10.1101/752204 — microbiology — Posted on 2019-08-31

68 SPINT2 inhibits relevant proteases in vitro and in vivo required for activation of both influenza viruses and metapneumoviruses

Straus, M.; Kinder, J. T.; Segall, M.; Dutch, R. E.; Whittaker, G. R.

10.1101/752592 — microbiology — Posted on 2019-08-31

69 Single Cell RNA-sequencing reveals cellular heterogeneity, stage transition and antigenic variation during stress adaptation in synchronized Plasmodium falciparum

Rawat, M.; Srivastava, A.; Gupta, I.; Karmodiya, K.

10.1101/752543 — microbiology — Posted on 2019-08-31

70 High-throughput prediction of MHC Class I and Class II neoantigens with MHCnuggets

Shao, X. M.; Bhattacharya, R.; Huang, J.; Sivakumar, I. K. A.; Tokheim, C.; Zheng, L.; Kaminow, B.; Omdahl, A.; Bonsack, M.; Riemer, A. B.; Velculescu, V.; Anagnostou, V.; Pagel, K.; Karchin, R.

10.1101/752469 — immunology — Posted on 2019-08-31

71 Chemokine receptors CCR1 and ACKR2 coordinate mammary gland development

Wilson, G. J.; Fukuoka, A.; Love, S. R.; Kim, J.; Pingen, M.; Hayes, A. J.; Graham, G.

10.1101/747360 — immunology — Posted on 2019-08-31

72 Expression of heat shock protein 70 is insufficient to extend Drosophila melanogaster longevity

Xiao, C.; Hull, D.; Qiu, S.; Yeung, J.; Zheng, J.; Barwell, T.; Robertson, R. M.; Seroude, L.

10.1101/753269 — genetics — Posted on 2019-08-31

73 Selective Sweep at a QTL in a Randomly Fluctuating Environment

Chevin, L.-M.

10.1101/752873 — evolutionary biology — Posted on 2019-08-31

74 Horizontal transmission and recombination maintain forever young bacterial symbiont genomes

Russell, S. L.; Pepper, E.; Svedberg, J.; Byrne, A.; Ruelas Castillo, J.; Vollmers, C.; Beinart, R.; Corbett-Detig, R.

10.1101/754028 — evolutionary biology — Posted on 2019-08-31

75 A winner in the Anthropocene: changing host plant distribution explains geographic range expansion in the gulf fritillary butterfly

Halsch, C. A.; Forister, M.; Shapiro, A. M.; Thorne, J. H.; Waetjen, D. P.

10.1101/754010 — ecology — Posted on 2019-08-31

76 LINbase: A Web service for genome-based identification of microbes as members of crowdsourced taxa

Tian, L.; Huang, C.; Heath, L. S.; Vinatzer, B. A.

10.1101/752212 — bioinformatics — Posted on 2019-08-31

77 About a tetraploid ivy in Sicily: from autochthonous Hedera to horticultural-invasive-hybrid package?

Fridlender, A.; Pech, N.

10.1101/751743 — ecology — Posted on 2019-08-31

78 Biological Process Activity Transformation of Single Cell Gene Expression for Cross-Species Alignment

Ding, H.; Blair, A.; Stuart, J.; Yang, Y.

10.1101/555268 — systems biology — Posted on 2019-08-31

79 Specialized medial prefrontal-amygdala coordination in other-regarding decision preference

dal monte, o.; Chu, C.-C. J.; Fagan, N. A.; Chang, S. W. C.

10.1101/640292 — neuroscience — Posted on 2019-08-31

80 SpliceVisuL: Visualization of Bidirectional LongShort-term Memory Networks for Splice JunctionPrediction

Dutta, A.; Dalmia, A.; R, A.; Singh, K. K.; Anand, A.

10.1101/451906 — bioinformatics — Posted on 2019-08-31

81 Salivary proteins of Phloeomyzus passerinii, a plant-manipulating aphid, and their impact on early gene responses of susceptible and resistant poplar genotypes

Portillo Lemus, L.; Tricard, J.; Duclercq, J.; Coulette, Q.; Giron, D.; Hano, C.; Huguet, E.; Lamblin, F.; Cherqui, A.; Salle, A.

10.1101/504613 — ecology — Posted on 2019-08-31

82 2.7 A cryo-EM structure of vitrified M. musculus H-chain apoferritin from 200 keV \"screening microscope\"

Hamdi, F.; Tueting, C.; Semchonok, D. A.; Visscher, K. M.; Kyrilis, F. L.; Meister, A.; Skalidis, I.; Schmidt, L.; Parthier, C.; Stubbs, M. T.; Kastritis, P. L.

10.1101/738724 — biophysics — Posted on 2019-08-31

83 Laocoön: a tool for high-throughput automated cell counting

Lim, K. Y.; Louie, M.; La Torre, A.; Korf, I.

10.1101/751073 — bioinformatics — Posted on 2019-08-31

84 PIN FORMED 2 facilitates the transport of Arsenite in Arabidopsis thaliana

shraf, M. A.; Umetsu, K.; Ponomarenko, O.; Saito, M.; Aslam, M.; Antipova, O.; Dolgova, N.; Kiani, C. D.; Nezhati, S.; Tanoi, K.; Minegishi, K.; Nagatsu, K.; Kamiya, T.; Fujiwara, T.; Luschnig, C.; Tanino, K.; Pickering, I.; George, G. N.; Rahman, A.

10.1101/710160 — plant biology — Posted on 2019-08-31

85 An antisense oligonucleotide leads to suppressed transcriptional elongation of Hdac2 and long-term memory enhancement

Poplawski, S.; Garbett, K. A.; McMahan, R. L.; Kordasiewicz, H. B.; Zhao, H.; Kennedy, A. J.; Goleva, S. B.; Sanders, T. H.; Motley, T.; Swayze, E. E.; Ecker, D. J.; Sweatt, D.; Michael, T. P.; Greer, C. B.

10.1101/618116 — pharmacology and toxicology — Posted on 2019-08-31

86 Stimulus-aware spatial filtering for single-trial neural response and temporal response function estimation in high-density EEG with applications in auditory research

Das, N.; Vanthornhout, J.; Francart, T.; Bertrand, A.

10.1101/541318 — neuroscience — Posted on 2019-08-31

87 Shifting from fear to safety through deconditioning-update: a novel approach to attenuate fear memories

Popik, B.; Amorim, F. E.; Amaral, O. B.; de Oliveira Alvares, L.

10.1101/605196 — neuroscience — Posted on 2019-08-31

88 A solution to the learning dilemma for recurrent networks of spiking neurons

Bellec, G.; Scherr, F.; Subramoney, A.; Hajek, E.; Salaj, D.; Legenstein, R.; Maass, W.

10.1101/738385 — neuroscience — Posted on 2019-08-31

89 Lorcaserin maintenance fails to attenuate heroin vs food choice in rhesus monkeys

Townsend, E. A.; Negus, S. S.; Poklis, J.; Banks, M.

10.1101/705020 — neuroscience — Posted on 2019-08-31

90 A NEW TECHNIQUE AND DEVICE FOR CONTROLLED AND CONTINUOUS DRUG DELIVERY INTO THE BRAIN. A PROOF OF CONCEPT STUDY.

U.R, A.; VERMA, K.

10.1101/746966 — neuroscience — Posted on 2019-08-31

91 Reassessing the validity of slow-wave dynamics as a proxy for NREM sleep homeostasis

Hubbard, J.; Gent, T. C.; Hoekstra, M. M.; Emmenegger, Y.; Mongrain, V.; Landolt, H.-P.; Adamantidis, A. R.; Franken, P.

10.1101/748871 — neuroscience — Posted on 2019-08-31

92 Exercise twice-a-day potentiates markers of mitochondrial biogenesis in men

Andrade-Souza, V. A.; Ghiarone, T.; Sansonio, A.; Silva, K. A. S.; Tomazini, F.; Arcoverde, L.; Fyfe, J.; Perri, E.; Saner, N.; Kuang, J.; Bertuzzi, R.; Leandro, C. G.; Bishop, D. J.; Lima-Silva, A. E.

10.1101/547489 — molecular biology — Posted on 2019-08-31

93 Clathrin’s adaptor interaction sites are repurposed to stabilize microtubules during mitosis

Rondelet, A.; Lin, Y.-C.; Singh, D.; Porfetye, A. T.; Thakur, H. C.; Hecker, A.; Brinkert, P.; Schmidt, N.; Bendre, S.; Mueller, F.; Widlund, P. O.; Bange, T.; Hiller, M.; Vetter, I. R.; Bird, A. W.

10.1101/750034 — cell biology — Posted on 2019-08-31

94 Why is cancer not more common? A changing microenvironment may help to explain why, and suggests strategies for anti-cancer therapy

Jiang, X.; Tomlinson, I. P. M.

10.1101/377226 — cancer biology — Posted on 2019-08-31

95 DeepPoseKit: a software toolkit for fast and robust animal pose estimation using deep learning

Graving, J. M.; Chae, D.; Naik, H.; Li, L.; Koger, B.; Costelloe, B. R.; Couzin, I. D.

10.1101/620245 — animal behavior and cognition — Posted on 2019-08-31

96 The mitogenome of Norway spruce and a reappraisal of mitochondrial recombination in plants

Sullivan, A. R.; Eldfjell, Y.; Schiffthaler, B.; Delhomme, N.; Asp, T.; Hebelstrup, K. H.; Keech, O.; Öberg, L.; Moller, I. M.; Arvestad, L.; Street, N. R.; Wang, X.-R.

10.1101/682732 — genomics — Posted on 2019-08-31

97 Using Machine Learning to Identify True Somatic Variants from Next-Generation Sequencing

Wu, C.; Zhao, X.; Welsh, M.; Costello, K.; Cao, K.; Abou Tayoun, A.; Li, M.; Sarmady, M.

10.1101/670687 — bioinformatics — Posted on 2019-08-31

98 xQTLImp: efficient and accurate xQTL summary statistics imputation

Wang, T.; Yin, Q.; Liu, Y.; Chen, J.; Wang, Y.; Peng, J.

10.1101/726182 — bioinformatics — Posted on 2019-08-31

99 Inter-slice leakage and intra-slice aliasing in simultaneous multi-slice echo-planar images

McNabb, C. B.; Lindner, M.; Shen, S.; Burgess, L. G.; Murayama, K.; Johnstone, T.

10.1101/458042 — neuroscience — Posted on 2019-08-31

100 Neurocomputational mechanisms underlying emotional awareness: insights afforded by deep active inference and their potential clinical relevance

Smith, R.; Lane, R. D.; Parr, T.; Friston, K.

10.1101/681288 — neuroscience — Posted on 2019-08-31

101 Drug susceptibility testing of Mycobacterium simiae: An emerging pathogen in Iran

Nasiri, M. J.; Amini, S.; Nikpor, Z.; Arefzadeh, S.; Mosavi, S. M. J.; Dabiri, H.; Goudarzi, M.; Goudarzi, H.; Tabarsi, P.; Sarokhalil, D. D.; Imani Fooladi, A. A.; Feizabadi, M. M.

10.1101/549428 — microbiology — Posted on 2019-08-31

102 Frameshifts and wild-type protein sequences are always similar because the genetic code is nearly optimal for frameshift tolerance

Wang, X.; Dong, Q.; Chen, G.; Zhang, J.; Liu, Y.

10.1101/067736 — genetics — Posted on 2019-08-31

103 The evolution of egg trading in simultaneous hermaphrodites

Pena, J.; Nöldeke, G.; Puebla, O.

10.1101/460386 — evolutionary biology — Posted on 2019-08-31

104 An agent-based model of the Foraging Ascomycete Hypothesis

Thomas, D. C.; Vandegrift, R.; Roy, B.

10.1101/197707 — ecology — Posted on 2019-08-31

105 Inverse correlation between heme synthesis and the Warburg effect in cancer cells

Sugiyama, Y.; Takahashi, E.; Takahashi, K.; Nakajima, M.; Tanaka, T.; Ogura, S.-i.

10.1101/753079 — biochemistry — Posted on 2019-08-30

106 Health care service providers experiences, understanding and conceptions of voluntary medical male circumcision in KwaZulu-Natal, South Africa

Nxumalo, C. T.; Mchunu, G. G.

10.1101/753046 — scientific communication and education — Posted on 2019-08-30

107 Lack of regularity between letters impacts word recognition performance

Beier, S.; Bernard, J.-B.

10.1101/753038 — scientific communication and education — Posted on 2019-08-30

108 Transmural and rate-dependent profiling of drug-induced arrhythmogenic risks through in silico simulations of multichannel pharmacology

Zhao, P.; Li, P.

10.1101/752998 — pharmacology and toxicology — Posted on 2019-08-30

109 NRL- and CRX-guided gene network modulates photoreceptor presynapse size and positioning during retinal development

Whitaker, D. T.; Mondal, A. K.; Fann, H.; Hargrove, P.; Brooks, M. J.; Chaitankar, V.; Yu, W.; Wu, Z.; Kim, S.-Y.; Swaroop, A.

10.1101/753012 — neuroscience — Posted on 2019-08-30

110 The intermediate proteasome is constitutively expressed in pancreatic beta cells and upregulated by stimulatory, non-toxic concentrations of interleukin 1 b

Marzec, M. T.; Khilji, M. S.; Verstappen, D.; Dahlby, T.; Burstein Prause, M. C.; Pihl, C.; Bresson, S. E.; Bryde, T. H.; Klindt, K.; Zivkovic, D.; Bousquet-Dubouch, M.-P.; Tyrberg, B.; Mandrup-Poulsen, T.

10.1101/753061 — molecular biology — Posted on 2019-08-30

111 Evidence of the absence of Human African Trypanosomiasis in northern Uganda: analyses of cattle, pigs and tsetse flies for the presence of Trypanosoma brucei gambiense

Cunningham, L. J.; Lingley, J. K.; Tirados, I.; Esterhuizen, J.; Opiyo, M.; Mangwiro, C. T. N.; Lehane, M.; Torr, S.

10.1101/753020 — microbiology — Posted on 2019-08-30

112 Molecular characterization of bacterial communities in sheep cheese through 16S rRNA gene sequencing

Endres, C. M.; de Castro, I. M. S.; Trevisol, L. D.; Mann, M. B.; Varela, A. P. M.; Frazzon, A. P. G.; Meyer, F. Q.; Frazzon, J.

10.1101/753053 — microbiology — Posted on 2019-08-30

113 Genomic and phenotypic characterization of Burkholderia isolates from the potable water system of the International Space Station

O'Rourke, A.; Lee, M. D.; Nierman, W. C.; Dupont, C. L.

10.1101/753087 — microbiology — Posted on 2019-08-30

114 Dynamical rearrangement of human epidermal growth factor receptor 2 upon antibody binding: effects on the dimerization

Melo, R.; Magalhaes, P. R.; Machuqueiro, M.; Almeida, J. G.; Melo, A.; Cordeiro, M. N. D. S.; Verde, S. C.; Gümüs, Z. H.; Moreira, I. S.; Correia, J. D. G.

10.1101/752980 — bioinformatics — Posted on 2019-08-30

115 High-resolution 3D imaging and topological mapping of the lymph node conduit system

Kelch, I. D.; Bogle, G.; Sands, G. B.; Phillips, A. R.; LeGrice, I.; Dunbar, R.

10.1101/752972 — immunology — Posted on 2019-08-30

116 Identification of a Novel Base J Binding Protein Complex Involved in RNA Polymerase II Transcription Termination in Trypanosomes

Sabatini, R.; Kieft, R.; Zhang, Y.; Marand, A.; Moran, J.; Bridger, R.; Wells, L.; Schmitz, R. J.

10.1101/753004 — biochemistry — Posted on 2019-08-30

117 The Imposition of Value on Odor: Transient and Persistent Representations of Odor Value in Prefrontal Cortex

Wang, P. Y.; Boboila, C.; Shamash, P.; Wu, Z.; Stein, N. P.; Abbott, L. F.; Axel, R.

10.1101/753426 — neuroscience — Posted on 2019-08-30

118 The meninges enhance leukemia survival in cerebral spinal fluid

Basile, P.; Jonart, L. M.; Ebadi, M.; Johnson, K.; Kerfeld, M.; Gordon, P. M.

10.1101/750513 — cancer biology — Posted on 2019-08-30

119 Single-cell RNA Profiling Identifies Diverse Cellular Responses to EWSR1-FLI1 Down-regulation in Ewing Sarcoma

Khoogar, R.; Lawlor, E.; Ignatius, M. S.; Yidong, C.; Kitagawa, K.; Huang, T.; Houghton, P. J.

10.1101/750539 — cancer biology — Posted on 2019-08-30

120 Topological Data Analysis reveals robust alterations in the whole-brain and frontal lobe functional connectomes in Attention-Deficit/Hyperactivity Disorder

Gracia-Tabuenca, Z.; Diaz-Patino, J. C.; Arelio, I.; Alcauter, S.

10.1101/751008 — neuroscience — Posted on 2019-08-30

121 Toward standards in clinical microbiome studies: comparison of three DNA extraction methods and two bioinformatic pipelines

Ducarmon, Q. R.; Hornung, B. B. V. H.; Geelen, A. R.; Kuijper, E. J.; Zwittink, R. D.

10.1101/751123 — microbiology — Posted on 2019-08-30

122 Loss of BubR1 Acetylation instigates Replication Stress leading to Complex Chromosomal Rearrangement in tumors

Park, J.; Yeu, S.-Y.; Paik, S.; Lee, J.; Jang, J.; Lee, S.; Koh, Y.-I.; Lee, H.

10.1101/752642 — cancer biology — Posted on 2019-08-30

123 Alternative polyadenylation drives oncogenic gene expression in pancreatic ductal adenocarcinoma

Venkat, S.; Tisdale, A. A.; Schwarz, J. R.; Alahmari, A. A.; Maurer, H. C.; Olive, K. P.; Eng, K. H.; Feigin, M. E.

10.1101/752295 — cancer biology — Posted on 2019-08-30

124 Interactions across life stages and thermal tolerance plasticity in Tigriopus californicus

Healy, T. M.; Bock, A. K.; Burton, R. S.

10.1101/751040 — zoology — Posted on 2019-08-30

125 In utero estrogenic endocrine disruption alters the stroma to increase extracellular matrix density and mammary gland stiffness.

Wormsbaecher, C.; Hindman, A. R.; Avendano, A.; Cortes, M.; Bushman, A.; Onua, L.; Kovalchin, C. E.; Murphy, A. R.; Helber, H. L.; Shapiro, A.; Voytovitch, K.; Kuang, X.; Song, J. W.; Burd, C. J.

10.1101/749044 — cancer biology — Posted on 2019-08-30

126 Days Gained Response Discriminates Treatment Response in Patients with Recurrent Glioblastoma Receiving Bevacizumab-based Therapies

Singleton, K. W.; Porter, A. B.; Hu, L. S.; Johnston, S. K.; Bond, K. M.; Rickertsen, C. R.; De Leon, G.; Whitmire, S. A.; Clark-Swanson, K. R.; Mrugala, M. M.; Swanson, K. R.

10.1101/752402 — cancer biology — Posted on 2019-08-30

127 A deep neural network approach to predicting clinical outcomes of neuroblastoma patients

Tranchevent, L.-C.; Azuaje, F.; Rajapakse, J. C.

10.1101/750364 — bioinformatics — Posted on 2019-08-30

128 Machine learning guided association of adverse drug reactions with in vitro target-based pharmacology

Arat, S.; Ietswaart, R.; Chen, A. X.; Farahmand, S.; Kim, B.; Armstrong, D.; Urban, L.

10.1101/750950 — pharmacology and toxicology — Posted on 2019-08-30

129 A template-matching algorithm for laminar identification of cortical recording sites from evoked response potentials

Matteucci, G.; Riggi, M.; Zoccolan, D.

10.1101/749069 — neuroscience — Posted on 2019-08-30

130 Genome-wide misexpression associated with hybrid sterility in Mimulus (monkeyflower)

Kerwin, R. E.; Sweigart, A. L.

10.1101/750687 — evolutionary biology — Posted on 2019-08-30

131 Mix & Match: Phenotypic coexistence as a key facilitator of solid tumour invasion

Strobl, M. A. R.; Krause, A. L.; Damaghi, M.; gillies, r. j.; Anderson, A.; Maini, P. K.

10.1101/750810 — cancer biology — Posted on 2019-08-30

132 Laocoön: a tool for high-throughput automated cell counting

Lim, K. Y.; Louie, M.; La Torre, A.; Korf, I.

10.1101/751073 — bioinformatics — Posted on 2019-08-30

133 Defective cell death of distinct microglial subsets contributes to ADHD-like behavior in mice

Chuang, H.-C.; Nichols, E. K.; Rauch, I.; Chang, W.-C.; Misra, R.; Lin, P. M.; Kitaoka, M.; Vance, R. E.; Saijo, K.

10.1101/749390 — neuroscience — Posted on 2019-08-30

134 Paternal cigarette smoke alters DNA methylation in sperm and gene expression in offspring brain

Murphy, P. J.; Guo, J.; Jenkins, T. G.; James, E. R.; Hoidal, J. R.; Huecksteadt, T.; Hotaling, J. M.; Carrell, D. T.; Cairns, B. R.; Aston, K. I.

10.1101/750638 — genetics — Posted on 2019-08-30

135 Catastrophes, connectivity, and Allee effects in the design of marine reserve networks

White, E. R.; Baskett, M. L.; Hastings, A.

10.1101/750448 — ecology — Posted on 2019-08-30

136 NETGE-PLUS: standard and network-based gene enrichment analysis in human and model organisms

Bovo, S.; Martelli, P. L.; Di Lena, P.; Casadio, R.

10.1101/750661 — bioinformatics — Posted on 2019-08-30

137 Polygenic Prediction of Substance Use Disorders in Clinical and Population Samples

Barr, P. B.; Ksinan, A.; Su, J.; Johnson, E. C.; Meyers, J. L.; Wetherill, L.; Latvala, A.; Aleive, F.; Chan, G.; Kuperman, S.; Nurnberger, J.; Kamarajan, C.; Anokhin, A.; Agrawal, A.; Rose, R. J.; Edenberg, H. J.; Schuckit, M.; Kaprio, J.; Dick, D. M.

10.1101/748038 — genetics — Posted on 2019-08-30

138 Winter is coming: pathogen emergence in seasonal environments

Carmona, P.; Gandon, S.

10.1101/753442 — ecology — Posted on 2019-08-30

139 TRIM21 and PHLDA3 Negatively Regulate the Cross-Talk between the PI3K/AKT Pathway and PPP Metabolism

Wu, H.; Cheng, J.; Huang, Y.; Zhang, X.; Yu, Y.; Zhang, W.; Wang, M.; Zhang, L.; Wang, M.; Yan, W.; Wu, Y.; Wu, S.; Jiao, J.; Tran, L.; Chi, F.; Jiang, P.; Zhang, X.

10.1101/750976 — cancer biology — Posted on 2019-08-30

140 Single-cell RNA sequencing reveals functional heterogeneity and sex differences of glioma-associated brain macrophages

Ochocka, N.; Segit, P.; Walentynowicz, K. A.; Wojnicki, K.; Cyranowski, S.; Swatler, J.; Mieczkowski, J.; Kaminska, B.

10.1101/752949 — cancer biology — Posted on 2019-08-30

141 Reduction in standard metabolic rate after multigenerational exposure to elevated temperatures in the wild

Pilakouta, N.; Killen, S. S.; Kristjansson, B. K.; Skulason, S.; Lindström, J.; Metcalfe, N. B.; Parsons, K. J.

10.1101/749986 — physiology — Posted on 2019-08-30

142 Isometric exercise facilitates attention to salient events in women via the noradrenergic system

Mather, M.; Huang, R.; Clewett, D.; Nielsen, S.; Velasco, R.; Tu, K.; Han, S.; Kennedy, B.

10.1101/749002 — neuroscience — Posted on 2019-08-30

143 The composition of the perinatal intestinal microbiota in horse

Husso, A.; Jalanka, J.; Alipour, M. J.; Huhti, P.; Kareskoski, M.; Pessa-Morikawa, T.; Iivanainen, A.; Niku, M.

10.1101/726109 — microbiology — Posted on 2019-08-30

144 Land use impacts poison frog chemical defenses through changes in leaf litter ant communities

Moskowitz, N. A.; Dorritie, B.; Fay, T.; Nieves, O. C.; Vidoudez, C.; Cambridge Rindge and Latin 2017 Biology Class, ; Masconomet 2017 Biotechnology Class, ; Fischer, E. K.; Trauger, S. A.; Coloma, L. A.; Donoso, D. A.; O'Connell, L. A.

10.1101/745976 — ecology — Posted on 2019-08-30

145 BRAin INteractive Sequencing Analysis Tool (BRAIN-SAT); facilitating interactive transcriptome analyses (http://brainsat.eu/)

Dubbelaar, M. L.; Brummer, M. L.; Meijer, M.; Eggen, B. J. L.; Boddeke, E. W. G. M.

10.1101/750000 — neuroscience — Posted on 2019-08-30

146 The enteric nervous system of the human and mouse colon at a single-cell resolution

Drokhlyansky, E.; Smillie, C. S.; Van Wittenberghe, N.; Ericsson, M.; Griffin, G. K.; Dionne, D.; Cuoco, M. S.; Goder-Reiser, M. N.; Sharova, T.; Aguirre, A. J.; Boland, G. M.; Graham, D.; Rozenblatt-Rosen, O.; Xavier, R. J.; Regev, A.

10.1101/746743 — genomics — Posted on 2019-08-30

147 Structural Studies of Overlapping Dinucleosomes in Solution

Atsushi, M.; Sugiyama, M.; Kono, H.; Kurumizaka, H.; Martel, A.; Porcar, L.; Li, Z.; Osakabe, A.; Kato, D.; Inoue, R.

10.1101/753327 — biophysics — Posted on 2019-08-30

148 Boundary-Driven Oscillations Rescue PdsA- cells

Eckstein, T.; Vidal-Henriquez, E.; Gholami, A.

10.1101/752014 — biophysics — Posted on 2019-08-30

149 Predicted effects of severing enzymes on the length distribution and total mass of microtubules

Kuo, Y.-W.; Howard, J.; Trottier, O.

10.1101/752006 — biophysics — Posted on 2019-08-30

150 Large scale active-learning-guided exploration to maximize cell-free production

Borkowski, O.; Koch, M.; Zettor, A.; Pandi, A.; Cardoso Batista, A.; Soudier, P.; Faulon, J.-L.

10.1101/751669 — synthetic biology — Posted on 2019-08-30

151 Dynamic actin-mediated nano-scale clustering of CD44 regulates its meso-scale organization at the plasma membrane

Sil, P.; Mateos, N.; Nath, S.; Buschow, S.; Manzo, C.; Suzuki, K. G. N.; Fujiwara, T.; Kusumi, A.; Garcia-Parajo, M. F.; Mayor, S.

10.1101/751834 — cell biology — Posted on 2019-08-30

152 Speed and diffusion of kinesin-2 are competing limiting factors in flagellar length control model

Ma, R.; Hendel, N. L.; Marshall, W. F.; Qin, H.

10.1101/751990 — cell biology — Posted on 2019-08-30

153 Sub-Nanometer Precision using Bayesian Grouping of Localizations

Fazel, M.; Wester, M. J.; Rieger, B.; Jungmann, R.; Lidke, K. A.

10.1101/752287 — biophysics — Posted on 2019-08-30

154 Lipopolysaccharide Simulations are Sensitive to Phosphate Charge and Ion Parameterization

Rice, A.; Rooney, M.; Greenwood, A. I.; Cotten, M.; Weresczczynski, J.

10.1101/752188 — biophysics — Posted on 2019-08-30

155 The molecular anatomy of mouse skin during hair growth and rest

Joost, S.; Annusver, K.; Jacob, T.; Sun, X.; Sivan, U.; Dalessandri, T.; Sequeira, I.; Sandberg, R.; Kasper, M.

10.1101/750042 — cell biology — Posted on 2019-08-30

156 Rod nuclear architecture determines contrast transmission of the retina and behavioral sensitivity in mice

Subramanian, K.; Weigert, M.; Borsch, O.; Petzold, H.; Garcia-Ulloa, A.; Myers, E. W.; Ader, M.; Solovei, I.; Kreysing, M.

10.1101/752444 — biophysics — Posted on 2019-08-30

157 Computing 3D chromatin configurations from contact probability maps by Inverse Brownian Dynamics

Kumari, K.; Duenweg, B.; Padinhateeri, R.; Jagadeeshan, R. P.

10.1101/751917 — biophysics — Posted on 2019-08-30

158 Controlling Structural Bias in Intrinsically Disordered Proteins Using Solution Space Scanning

Holehouse, A. S.; Sukenik, S.

10.1101/752378 — biophysics — Posted on 2019-08-30

159 Pumilio Proteins Exert Distinct Biological Functions and Multiple Modes of Post-Transcriptional Regulation in Embryonic Stem Cell Pluripotency and Early Embryogenesis

Uyhazi, K. E.; Yang, Y.; Liu, N.; Qi, H.; Huang, X. A.; Mak, W.; Weatherbee, S. D.; Song, X.; Lin, H.

10.1101/751909 — developmental biology — Posted on 2019-08-30

160 Primary cilia deficiency in neural crest cells causes Anterior Segment Dysgenesis

Iomini, C.; Portal, C.; Lwigale, P.; Rompolas, P.

10.1101/752105 — developmental biology — Posted on 2019-08-30

161 Novel sampling strategies and a coarse-grained score function for docking homomers, flexible heteromers, and oligosaccharides using Rosetta in CAPRI Rounds 37-45

Roy Burman, S. S.; Nance, M. L.; Jeliazkov, J. R.; Labonte, J. W.; Lubin, J. H.; Biswas, N.; Gray, J. J.

10.1101/749317 — biophysics — Posted on 2019-08-30

162 Olfactory Landmarks and Path Integration Converge to Form a Cognitive Spatial Map

Fischler, W. M.; Joshi, N.; Devi-Chou, V.; Kitch, L.; Schnitzer, M.; Abbott, L. F.; Axel, R.

10.1101/752360 — neuroscience — Posted on 2019-08-30

163 LIS1 determines cleavage plane positioning by regulating actomyosin-mediated cell membrane contractility

Moon, H. M.; Hippenmeyer, S.; Luo, L.; Wynshaw-Boris, A.

10.1101/751958 — developmental biology — Posted on 2019-08-30

164 The hunger games: sensing host arginine is essential for Leishmania parasite virulence

Goldman Pinkovich, A.; Kannan, S.; Nitzan-Koren, R.; Puri, M.; Bar-Avraham, Y.; McDonald, J.; Sur, A.; Zhang, W. W.; Matlashewski, G.; Myler, P. J.; Zilberstein, D.

10.1101/751610 — cell biology — Posted on 2019-08-30

165 Neural circuit mechanism underlying the feeding controlled by insula-central amygdala pathway

Zhang-Molina, C.; Schmit, M. B.; Cai, H.

10.1101/750562 — neuroscience — Posted on 2019-08-30

166 Deciphering the rules underlying xenogeneic silencing and counter-silencing of Lsr2-like proteins

Wiechert, J.; Filipchyk, A.; Hünnefeld, M.; Gätgens, C.; Heermann, R.; Frunzke, J.

10.1101/751156 — microbiology — Posted on 2019-08-30

167 Fast and robust detection of colistin resistance in Escherichia coli using the MALDI Biotyper Sirius mass spectrometry system

Furniss, R. C.; Dortet, L.; Bolland, W.; Drews, O.; Sparbier, K.; Bonnin, R.; Filloux, A.; Kostrzewa, M.; Mavridou, D.; Larrouy-Maumus, G.

10.1101/752600 — microbiology — Posted on 2019-08-30

168 Modelling the effects of ongoing alpha activity on visual perception: the Oscillation-based Probability of Response

Zazio, A.; Schreiber, M.; Miniussi, C.; Bortoletto, M.

10.1101/752766 — neuroscience — Posted on 2019-08-30

169 Adverse childhood experiences in families with multiple members diagnosed to have psychiatric illnesses

Someshwar, A.; Holla, B.; Agarwal, P. P.; Thomas, A.; Jose, A.; Joseph, B.; Raju, B.; Karle, H.; Muthukumaran, M.; Kodancha, P. G.; Kumar, P.; Reddy, P. V.; Nadella, R. K.; Naik, S. T.; Mitra, S.; Mallappagiri, S.; Sreeraj, V. S.; Balachander, S.; Ganesh, S.; Murthy, P.; Benegal, V.; Reddy, J. Y.; Jain, S.; Accelerator Program for Discovery in Brain disorders using Stem cells (ADBS) Consortium, ; Mahadevan, J.; Viswanath, B.

10.1101/745521 — neuroscience — Posted on 2019-08-30

170 Substantial near-infrared radiation-driven photosynthesis of chlorophyll f-containing cyanobacteria in a natural habitat

Kühl, M.; Trampe, E.; Mosshammer, M.; Johnson, M.; Koren, K.; Larkum, A. W. D.

10.1101/750174 — ecology — Posted on 2019-08-30

171 Alcohol causes lasting differential transcription in Drosophila mushroom body neurons

Petruccelli, E.; Ledru, N.; Kaun, K. R.

10.1101/752477 — neuroscience — Posted on 2019-08-30

172 Kainate-type of glutamate receptors regulate wiring of intrinsic glutamatergic connectivity in the amygdala

Ryazantseva, M.; Englund, J.; Shintyapina, A.; Huupponen, J.; Pitkänen, A.; Partanen, J. M.; Lauri, S. E.

10.1101/753103 — neuroscience — Posted on 2019-08-30

173 Optogenetic reactivation of prefrontal social memory trace mimics social buffering of fear

Gutzeit, V. A.; Ahuna, K.; Santos, T. L.; Cunningham, A. M.; Sadsad Rooney, M.; Denny, C. A.; Donaldson, Z. R.

10.1101/752386 — neuroscience — Posted on 2019-08-30

174 Modelling erythropoiesis in congenital dyserythropoietic anaemia type I (CDA-I)

Scott, C.; Downes, D. J.; Brown, J. M.; Babbs, C.; Olijnik, A.-A.; Gosden, M.; Beagrie, R.; Schwessinger, R.; Fisher, C. A.; Rose, A.; Ferguson, D. J.; Johnson, E.; Hill, Q. A.; Okoli, S.; Renella, R.; Ryan, K.; Brand, M.; Hughes, J. R.; Roy, N.; Higgs, D. R.; Buckle, V. J.

10.1101/744367 — genetics — Posted on 2019-08-30

175 Genomic and phenotypic characterization of Burkholderia isolates from the potable water system of the International Space Station

O'Rourke, A.; Lee, M. D.; Nierman, W. C.; Dupont, C. L.

10.1101/753087 — microbiology — Posted on 2019-08-30

176 Eukaryotic plankton community stability across reef environments in Bocas del Toro Archipelago (Panama)

Rodas, A. M.; Buie, L. K.; Aichelman, H. E.; Castillo, K. D.; Wright, R. M.; Davies, S. W.

10.1101/750356 — ecology — Posted on 2019-08-30

177 CD47 suppresses phagocytosis by repositioning SIRPA and preventing integrin activation

Morrissey, M. A.; Vale, R. D.

10.1101/752311 — cell biology — Posted on 2019-08-30

178 Trehalose 6-phosphate Controls Seed Filling by Inducing Auxin Biosynthesis

Meitzel, T.; Radchuk, R.; McAdam, E. L.; Thormählen, I.; Feil, R.; Munz, E.; Hilo, A.; Geigenberger, P.; Ross, J. J.; Lunn, J. E.; Borisjuk, L.

10.1101/752915 — plant biology — Posted on 2019-08-30

179 Cut and paste - Efficient cotyledon micrografting for Arabidopsis thaliana seedlings

Bartusch, K.; Trenner, J.; Quint, M.

10.1101/751677 — plant biology — Posted on 2019-08-30

180 Sugar availability suppresses the auxin-induced strigolactone pathway to promote bud outgrowth

Bertheloot, J.; Barbier, F. F.; Boudon, F.; Perez-Garcia, M.-D.; Peron, T.; Citerne, S.; Dun, E.; Beveridge, C.; Godin, C.; Sakr, S.

10.1101/752147 — plant biology — Posted on 2019-08-30

181 PDK1 has a pleiotropic PINOID-independent role in Arabidopsis development

Xiao, Y.; Offringa, R.

10.1101/752725 — plant biology — Posted on 2019-08-30

182 Temperature dependent sex-biased gene expression in the gametophytes of the kelp Saccharina latissima

Monteiro, C.; Heinrich, S.; Bartsch, I.; Valentin, K.; Corre, E.; Collen, J.; Harms, L.; Glöckner, G.; Bischof, K.

10.1101/750455 — plant biology — Posted on 2019-08-30

183 Development of a hybrid Bayesian network model for predicting acute fish toxicity using multiple lines of evidence

Moe, S. J.; Madsen, A. L.; Connors, K. A.; Rawlings, J. M.; Belanger, S. E.; Landis, W. G.; Wolf, R.; Lillicrap, A. D.

10.1101/750935 — pharmacology and toxicology — Posted on 2019-08-30

184 Cell motion as a stochastic process controlled by focal contacts dynamics.

Lo Vecchio, S.; Thiagarajan, R.; Caballero, D.; Vigon, V.; Navoret, L.; Voituriez, R.; Riveline, D.

10.1101/750331 — biophysics — Posted on 2019-08-30

185 FMO1 catalyzes the production of taurine from hypotaurine

Shephard, E. A.; Veeravalli, S.; Phillips, I. R.; Freire, R. T.; Varshavi, D.; Everett, J. R.

10.1101/750273 — biochemistry — Posted on 2019-08-30

186 Solution structure and assembly of β-amylase 2 from Arabidopsis thaliana

Chandrasekharan, N. P.; Ravenburg, C. M.; Roy, I. R.; Monroe, J. D.; Berndsen, C. E.

10.1101/751602 — biochemistry — Posted on 2019-08-30

187 Expression and Purification of a Mammalian Protein: Cytosolic Domain of IRE1α from Insect Sf21 Cells

Oak, A.; Jansen, G.; Chan, C.

10.1101/750430 — molecular biology — Posted on 2019-08-30

188 Cellular co-infection increases the speed and efficiency of influenza A virus production and shapes the interferon response to infection

Martin, B. E.; Harris, J. D.; Sun, J.; Koelle, K. V.; brooke, c. B.

10.1101/752329 — microbiology — Posted on 2019-08-30

189 Prototypical pacemaker neurons are immunocompetent cells

Klimovich, A.; Giacomello, S.; Björklund, A.; Faure, L.; Kaucka, M.; Giez, C.; Murillo-Rincon, A. P.; Matt, A.-S.; Crupi, G.; de Anda, J.; Wong, G. C. L.; D'Amato, M.; Adameyko, I.; Bosch, T. C. G.

10.1101/750026 — developmental biology — Posted on 2019-08-30

190 Sag currents are a major contributor to human pyramidal cell intrinsic differences across cortical layers and between individuals

Moradi-Chameh, H.; Wang, L.; Rich, S.; Zhang, L.; Carlen, P. L.; Tripathy, S.; Valiante, T. A.

10.1101/748988 — neuroscience — Posted on 2019-08-30

191 The global phylogenetic landscape and nosocomial spread of the multidrug-resistant opportunist Stenotrophomonas maltophilia

Groschel, M. I.; Meehan, C. J.; Barilar, I.; Diricks, M.; Gonzaga, A.; Steglich, M.; Conchillo-Sole, O.; Scherer, I. C.; Mamat, U.; Luz, C. F.; De Bruyne, K.; Utpatel, C.; Yero, D.; Gibert, I.; Daura, X.; Kampmeier, S.; Rahman, N. A.; Kresken, M.; van der Werf, T. S.; Alio, I.; Streit, W.; Zhou, K.; Schwartz, T.; Rossen, J. W.; Farhat, M. R.; Schaible, U.; Nuebel, U.; Rupp, J.; Steinmann, J.; Niemann, S.; Kohl, T. A.

10.1101/748954 — genomics — Posted on 2019-08-30

192 CONSTRUCTION OF A GENETIC MAP OF RILs DERIVED FROM WHEAT (T. AESTIVUM L.) VARIETIES PAMYATII AZIEVA X PARAGON USING HIGH-THROUGHPUT SNP GENOTYPING PLATFORM KASP - COMPETITIVE ALLELE SPECIFIC PCR

Yermekbayev, K.; Griffiths, S.; Chhetry, M.; Leverington-Waite, M.; Orford, S.; Amalova, A.; Abugalieva, S.; Turuspekov, Y.

10.1101/740324 — genetics — Posted on 2019-08-30

193 Population-specific sequence and expression differentiation in Europeans

Jiang, X.; Assis, R.

10.1101/749499 — evolutionary biology — Posted on 2019-08-30

194 In-silico Optimisation of Mass Spectrometry Fragmentation Strategies in Metabolomics

Wandy, J.; Davies, V.; van der Hooft, J. J. J.; Weidt, S.; Daly, R.; Rogers, S.

10.1101/744227 — bioinformatics — Posted on 2019-08-30

195 Methods for Copy Number Aberration Detection from Single-cell DNA Sequencing Data

Fan, X.; Edrisi, M.; Navin, N.; Nakhleh, L.

10.1101/696179 — bioinformatics — Posted on 2019-08-30

196 Breast Tumor Cellularity Assessment using Deep Neural Networks

Rakhlin, A.; Tiulpin, A.; Shvets, A. A.; Kalinin, A. A.; Iglovikov, V. I.; Nikolenko, S.

10.1101/628693 — pathology — Posted on 2019-08-30

197 The association between mineralised tissue formation and the mechanical local in vivo environment: Time-lapsed quantification of a mouse defect healing model

Tourolle ne Betts, D.; Wehrle, E.; Paul, G. R.; Kuhn, G. A.; Christen, P.; Hofmann, S.; Muller, R.

10.1101/721365 — bioengineering — Posted on 2019-08-30

198 Improved Statistical Efficiency of Simultaneous Multi-Slice fMRI by Reconstruction with Spatially Adaptive Temporal Smoothing

Chiew, M.; Miller, K. L.

10.1101/646554 — neuroscience — Posted on 2019-08-30

199 Morphology does not covary with predicted behavioural correlations of the domestication syndrome in dogs

Hansen Wheat, C.; van der Bijl, W.; Wheat, C. W.

10.1101/660829 — evolutionary biology — Posted on 2019-08-30

200 Disrupted basal ganglia-thalamocortical loops in focal to bilateral tonic-clonic seizures

He, X.; Chaitanya, G.; Asma, B.; Caciagli, L.; Bassett, D. S.; Tracy, J. I.; Sperling, M. R.

10.1101/618215 — neuroscience — Posted on 2019-08-30

201 Cellular reprogramming for successful CNS axon regeneration is driven by a temporally changing cast of transcription factors

Dhara, S. P.; Rau, A.; Flister, M. J.; Recka, N. M.; Laiosa, M. D.; Auer, P. L.; Udvadia, A. J.

10.1101/638734 — neuroscience — Posted on 2019-08-30

202 Deep Multi-State Dynamic Recurrent Neural Networks Operating on Wavelet Based Neural Features for Robust Brain Machine Interfaces

Haghi, B.; Kellis, S.; Shah, S.; Ashok, M.; Bashford, L.; Kramer, D.; Lee, B.; Liu, C.; Andersen, R. A.; Emami, A.

10.1101/710327 — neuroscience — Posted on 2019-08-30

203 Grazer behavior can regulate large-scale patterns of community states

Karatayev, V. A.; Baskett, M. L.; Kushner, D. J.; Shears, N. T.; Caselle, J. E.; Boettiger, C.

10.1101/722215 — ecology — Posted on 2019-08-30

204 Atrous Convolution with Transfer Learning for Skin Lesions Classification

Ratul, M. A. R.; Mozaffari, M. H.; Parimbelli, E.; Lee, W.

10.1101/746388 — cancer biology — Posted on 2019-08-30

205 Perceptions, attitudes and practices towards scabies in communities on the Bijagos Islands, Guinea-Bissau

Lopes, M. J.; Teixeira da Silva, E.; Ca, J.; Goncalves, A.; Rodrigues, A.; Mandjuba, C.; Nakutum, J.; D'Alessandro, U.; Achan, J.; Logan, J.; Bailey, R.; Walker, S.; Last, A.; Marks, M.

10.1101/574327 — epidemiology — Posted on 2019-08-30

206 Non-invasive prenatal testing by low coverage genomic sequencing: Detection limits of screened chromosomal microdeletions

Kucharik, M.; Gnip, A.; Hyblova, M.; Budis, J.; Strieskova, L.; Harsanyova, M.; Duris, F.; Radvanszky, J.; Minarik, G.; Szemes, T.

10.1101/686345 — bioinformatics — Posted on 2019-08-30

207 Identification of Slit3 as a locus affecting nicotine preference in zebrafish and human smoking behaviour

Brock, A. J.; Garcia-Gonzalez, J.; Parker, M. O.; Jolliffe, D.; Sudwarts, A.; Teh, M.-T.; Busch-Nentwich, E. M.; Stemple, D. L.; Martineau, A. R.; Kaprio, J.; Palviainen, T.; Kuan, V.; Walton, R. T.; Brennan, C. H.

10.1101/453928 — genetics — Posted on 2019-08-30

208 The burden of cutaneous and mucocutaneous leishmaniasis in Ecuador (2014-2018), a national registry-based study

Henriquez-Trujillo, A. R.; Coral-Almeida, M.; Calvopina-Hinojosa, M.

10.1101/751446 — microbiology — Posted on 2019-08-29

209 HMGB1 mediates the development of tendinopathy due to mechanical overloading

Zhao, G.; Zhang, J.; Nie, D.; Zhou, Y.; Li, F.; Onishi, K.; Wang, J. H.-C.

10.1101/751495 — cell biology — Posted on 2019-08-29

210 Multilevel modelling, prevalence and predictors of hypertension in Ghana: Evidence from Wave 2 of the World Health Organizations Study on Global AGEing and adult health.

Aheto, J. M. K.; Dagne, G. A.

10.1101/751487 — bioinformatics — Posted on 2019-08-29

211 Mapping of Quantitative Trait Loci for Traits linked to Fusarium Head Blight Symptoms Evaluation in Barley RILs

Ogrodowicz, P.; Kuczynska, A.; Mikołajczak, K.; Adamski, T.; Surma, M.; Krajewski, P.; Cwiek-Kupczynska, H.; Kempa, M.; Rokicki, M.; Jasinska, D.

10.1101/751552 — plant biology — Posted on 2019-08-29

212 SWIMMING PREVENTS MEMORY IMPAIRMENT BY INCREASING THE ANTIOXIDANT DEFENSE IN AN ANIMAL MODEL OF DUCHENNE MUSCULAR DYSTROPHY

Nocetti Ribeiro, P. M.; Alberti, A.; Freiberger, V.; Ventura, L.; Grigollo, L. R.; Andreu, C. S.; Nodari Junior, R. J.; Martins, D. F.; Comim, C. M.

10.1101/751461 — neuroscience — Posted on 2019-08-29

213 FUNCTION OF PUMILIO GENES IN HUMAN EMBRYONIC STEM CELLS AND THEIR EFFECT IN STEMNESS AND CARDIOMYOGENESIS

Silva, I. L. Z.; Robert, A. W.; Cabo, G. C.; Spangenberg, L.; Stimamiglio, M. A.; Dallagiovanna, B.; Gradia, D. F.; Shigunov, P.

10.1101/751537 — molecular biology — Posted on 2019-08-29

214 The deubiquitinating activity of Middle East respiratory syndrome coronavirus papain-like protease delays the innate immune response and enhances virulence in a mouse model

Knaap, R.; Fernandez-Delgado, R.; Dalebout, T. J.; Oreshkova, N.; Bredenbeek, P. J.; Enjuanes, L.; Sola, I.; Snijder, E. J.; Kikkert, M.

10.1101/751578 — microbiology — Posted on 2019-08-29

215 DNA-validated parthenogenesis: first case in a captive female Cuban boa (Chilabothrus angulifer)

Seixas, F.; Morinha, F.; Luis, C.; Alvura, N.; Pires, M. d. A. C.

10.1101/751529 — evolutionary biology — Posted on 2019-08-29

216 Rampant loss of social traits during domestication of a wild Bacillus subtilis

Barreto, H. C.; Cordeiro, T. N.; Henriques, A. O.; Gordo, I.

10.1101/751438 — evolutionary biology — Posted on 2019-08-29

217 Assessing the potential of plains zebra to maintain African horse sickness in the Western Cape Province, South Africa

Porphyre, T.; Grewar, J. D.

10.1101/751453 — ecology — Posted on 2019-08-29

218 AMPK regulates ESCRT-dependent microautophagy of proteasomes concomitant with proteasome storage granule assembly during glucose starvation

Li, J.; Breker, M.; Graham, M.; Schuldiner, M.; Hochstrasser, M.

10.1101/751420 — cell biology — Posted on 2019-08-29

219 Experimental and modeling study of the formation of cell aggregates with differential substrate adhesion

Adenis, L.; Gontran, E.; Deroulers, C.; Grammaticos, B.; Juchaux, M.; Seksek, O.; Badoual, M.

10.1101/751511 — biophysics — Posted on 2019-08-29

220 CHARACTERIZATION AND SAP TRANSMISSION OF CITRUS BENT LEAF VIROID IN MALAYSIA

Iftikhar, Y.; Vadamalai, G.; Kong, L. L.; Khoo, Y. W.; Murugan, T.; Adawiyah, R.; Roslin, N. A.

10.1101/751560 — pathology — Posted on 2019-08-29

221 Ca2+ signaling in astrocytes is sleep-wake state specific and modulates sleep

Bojarskaite, L.; Bjornstad, D. M.; Pettersen, K. H.; Cunen, C.; Hermansen, G. H.; Abjorsbraten, K. S.; Sprengel, R.; Vervaeke, K.; Tang, W.; Enger, R.; Nagelhus, E. A.

10.1101/750281 — neuroscience — Posted on 2019-08-29

222 Prognostics for pain in osteoarthritis: Do clinical measures predict pain after total joint replacement?

Barroso, J.; Wakaizumi, K.; Reckziegel, D.; Pinto-Ramos, J.; Schnitzer, T.; Galhardo, V.; Apkarian, V.

10.1101/751503 — neuroscience — Posted on 2019-08-29

223 Oxidative stress, telomere length, and frailty in an old age population

Martinez-Ezquerro, J. D.; Rodriguez-Castaneda, A.; Ortiz-Ramirez, M.; Sanchez-Garcia, S.; Rosas-Vargas, H.; Sanchez-Arenas, R.; Garcia-delaTorre, P.

10.1101/414680 — molecular biology — Posted on 2019-08-29

224 Healthy ageing and sentence production: Disrupted lexical access in the context of intact syntactic planning

Hardy, S. M.; Segaert, K.; Wheeldon, L.

10.1101/327304 — neuroscience — Posted on 2019-08-29

225 Patterns of hybrid seed inviability in perennials of the Mimulus guttatus sp. complex reveal a potential role of parental conflict in reproductive isolation

Coughlan, J. M.; Wilson Brown, M.; Willis, J. H.

10.1101/458315 — evolutionary biology — Posted on 2019-08-29

226 Combinatorial quorum sensing in Pseudomonas aeruginosa allows for novel cheating strategies

Gurney, J.; Azimi, S.; McNally, A.; Brown, S. P.; Diggle, S. P.

10.1101/313502 — microbiology — Posted on 2019-08-29

227 Selective sweeps under dominance and inbreeding

Hartfield, M.; Bataillon, T.

10.1101/318410 — evolutionary biology — Posted on 2019-08-29

228 Baroreceptor denervation reduces inflammatory status and worsens cardiovascular collapse during systemic inflammation

Amorim, M. R.; de Deus, J. L.; Pereira, C. A.; da Silva, L. E. V.; Borges, G. S.; Ferreira, N. S.; Batalhao, M. E.; Antunes-Rodrigues, J.; Carnio, E. C.; Tostes, R. C.; Branco, L. G.

10.1101/748608 — immunology — Posted on 2019-08-29

229 Body height in young adult men and risk of dementia later in adult life

Jorgensen, T. S. H.; Christensen, G. T.; Christensen, K.; Sorensen, T. I.; Osler, M.

10.1101/748467 — physiology — Posted on 2019-08-29

230 Efficient whole genome sequencing of influenza A viruses

Isa, P.; Escalera, M.; Cobian-Guemes, A. G.; Taboada, B.; Lopez-Martinez, I.; Vazquez-Perez, J. A.; Montalvo-Corral, M.; Hernandez, J.; Diaz-Quinones, J. A.; Barrera Badillo, G.; Lopez, S.; Arias, C. F.

10.1101/749234 — microbiology — Posted on 2019-08-29

231 LFMD: detecting low-frequency mutations in genome sequencing data without molecular tags

Ye, R.; Ruan, J.; Zhuang, X.; Qi, Y.; An, Y.; Xu, J.; Mak, T.; Liu, X.; Zhang, X.; Yang, H.; Xu, X.; Baum, L.; Nie, C.; Sham, P. C.

10.1101/617381 — bioinformatics — Posted on 2019-08-29

232 Biallelic TANGO1 mutations cause a novel syndromal disease due to hampered cellular collagen secretion

Lekszas, C.; Foresti, O.; Raote, I.; Lietdke, D.; Koenig, E.-M.; Nanda, I.; Vona, B.; De Coster, P.; Cauwels, R.; Malhotra, V.; Haaf, T.

10.1101/750349 — genetics — Posted on 2019-08-29

233 HOPS recognizes each SNARE, assembling ternary trans-complexes for sudden fusion upon engagement with the 4th SNARE

Song, H.; Orr, A. S.; Harner, M. E.; Wickner, W. T.

10.1101/751404 — biochemistry — Posted on 2019-08-29

234 Single-cell tracing of the first hematopoietic stem cell generation in human embryos

Zeng, Y.; He, J.; Bai, Z.; Li, Z.; Gong, Y.; Liu, C.; Ni, Y.; Du, J.; Ma, C.; Bian, L.; Lan, Y.; Liu, B.

10.1101/750158 — developmental biology — Posted on 2019-08-29

235 The effect of APOBEC3B deaminase on double-stranded DNA

Chapman, J.; Custance, M.; Shen, B.; Furano, A. V.

10.1101/750877 — biochemistry — Posted on 2019-08-29

236 Rac1 is a downstream effector of PKCα in structural synaptic plasticity

Tu, X.; Yasuda, R.; Colgan, L. A.

10.1101/750372 — neuroscience — Posted on 2019-08-29

237 Temporal fluctuations in the brain’s modular architecture during movie-watching

Betzel, R. F.; Byrge, L.; Zamani Esfahlani, F.; Kennedy, D. P.

10.1101/750919 — neuroscience — Posted on 2019-08-29

238 Localizing regions in the genome contributing to ADHD, aggressive and antisocial behavior

Rodriguez Lopez, M. L.; Franke, B.; Klein, M.

10.1101/750091 — genetics — Posted on 2019-08-29

239 Evolution of trade-offs across environments following experimental evolution of the generalist Drosophila suzukii to different fruit media

Olazcuaga, L.; Rode, N. O.; Foucaud, J.; Gautier, M.; Deschamps, C.; Loiseau, A.; Lemenager, N.; Facon, B.; Ravigne, V.; Hufbauer, R. A.; Estoup, A.

10.1101/749945 — evolutionary biology — Posted on 2019-08-29

240 Suppression of membranous LRP5 recycling, WNT/β-catenin signaling, and colorectal tumorigenesis by 15-LOX-1 peroxidation of PI3P_linoleic acid

Liu, F.; Zuo, X.; Liu, Y.; Deguchi, Y.; Moussalli, M. J.; Chen, W.; Yang, P.; Wei, B.; Lorenzi, P. L.; Gao, S.; Jaoude, J. C.; Mehdizadeh, A.; Valentin, L. A.; Wei, D.; Shureiqi, I.

10.1101/747592 — cancer biology — Posted on 2019-08-29

241 Brain permeable AMPK activator R481 raises glycemia by autonomic nervous system activation and amplifies the counterregulatory response to hypoglycemia in rats

Cruz, A. M.; Malekizadeh, Y.; Vlachaki Walker, J. M.; Weightman Potter, P. G.; Pye, K. R.; Shaw, S. J.; Ellacott, K. L.; Beall, C.

10.1101/749929 — neuroscience — Posted on 2019-08-29

242 Direct interaction of the TonB-like protein FusB with its ferredoxin substrate is required for import

Wojnowska, M.; Walker, D.

10.1101/749960 — microbiology — Posted on 2019-08-29

243 High-throughput sequencing analysis of bacterial diversity in raw and pasteurized goat milk

Huang, F.; Liu, S.; Zhou, X.; Wang, P.; He, R.; Zhou, Z.; Zou, C.

10.1101/751149 — microbiology — Posted on 2019-08-29

244 Local patch occupancy dynamics match the distribution of European trees at continental scale

Guyennon, A.; Reineking, B.; Dahlgren, J.; Kaendler, G.; Lehtonen, A.; Ratcliffe, S.; Ruiz-Benito, P.; Zavala, M. A.; Kunstler, G.

10.1101/748483 — ecology — Posted on 2019-08-29

245 Cyclin N-Terminal Domain-Containing 1 (CNTD1) coordinates meiotic crossover formation with cell cycle progression in a cyclin-independent manner

Gray, S.; Santiago, E.; Chappie, J. S.; Cohen, P. E.

10.1101/750596 — cell biology — Posted on 2019-08-29

246 scHLAcount: Allele-specific HLA expression from single-cell gene expression data

Darby, C. A.; Stubbington, M. J. T.; Marks, P. J.; Martinez Barrio, A.; Fiddes, I. T.

10.1101/750612 — bioinformatics — Posted on 2019-08-29

247 ROP INTERACTIVE PARTNER b interacts with the ROP GTPase RACB and supports fungal penetration into barley epidermal cells

McCollum, C.; Engelhardt, S.; Huckelhoven, R.

10.1101/750265 — plant biology — Posted on 2019-08-29

248 An assessment of LRRK2 serine 935 phosphorylation in human peripheral blood mononuclear cells in idiopathic Parkinson’s disease and G2019S LRRK2 cohorts

Padmanabhan, S.; Lanz, T. A.; Gorman, D.; Wolfe, M.; Levers, N.; Joshi, N.; Liong, C.; Narayan, S.; Alcalay, R. N.; Hutten, S. J.; Baptista, M. A. S.; Merchant, K.

10.1101/749226 — neuroscience — Posted on 2019-08-29

249 A morphological analysis of activity-dependent myelination and myelin injury in transitional oligodendrocytes

Toth, E.; Rassul, S. M.; Berry, M.; Fulton, D.

10.1101/750083 — neuroscience — Posted on 2019-08-29

250 In silico and empirical evaluation of twelve COI & 16S metabarcoding primer sets for insectivorous diet analyses

Tournayre, O.; Leuchtmann, M.; Filippi-Codaccioni, O.; Trillat, M.; Piry, S.; Pontier, D.; Charbonnel, N.; Galan, M.

10.1101/742874 — molecular biology — Posted on 2019-08-29

251 Inhibitory effect of Bacillus subtilis WL-2 and its IturinA lipopeptides against Phytophthora infestans

Wang, Y. Y.; Zhang, C. Y.; Wu, L. F.; Wang, L.; Gao, W. B.; Jiang, J. Z.; Wu, Y. Q.

10.1101/751131 — microbiology — Posted on 2019-08-29

252 Evaluating kin and group selection theory as tools for analyzing microbial data

smith, j.; Inglis, R. F.

10.1101/742122 — evolutionary biology — Posted on 2019-08-29

253 Highly variable COI haplotype diversity between three species of invasive pest fruit fly reflects remarkably incongruent demographic histories

Doorenweerd, C.; San Jose, M.; Barr, N.; Leblanc, L.; Rubinoff, D.

10.1101/742007 — evolutionary biology — Posted on 2019-08-29

254 Endothelial pannexin 1 channels control inflammation by regulating intracellular calcium

Yang, Y.; Delalio, L. J.; Best, A. K.; Macal, E. H.; Milstein, J. A.; Donnelly, I.; Miller, A. M.; McBride, M.; Shu, X. H.; Koval, M.; Isakson, B. E.; Johnstone, S. R.

10.1101/750323 — cell biology — Posted on 2019-08-29

255 Repository-scale Co- and Re-analysis of Tandem Mass Spectrometry Data

Jarmusch, A. K.; Wang, M.; Aceves, C. M.; Advani, R. S.; Aguire, S.; Aksenov, A. A.; Aleti, G.; Aron, A. T.; Bauermeister, A.; Bolleddu, S.; Bouslimani, A.; Caraballo-Rodriguez, A. M.; Chaar, R.; Coras, R.; Elijah, E. O.; Ernst, M.; Gauglitz, J. M.; Gentry, E. C.; Husband, M.; Jarmusch, S. A.; Jones, K. L.; Kamenik, Z.; Le Gouellec, A.; Lu, A.; McCall, L.-I.; McPhail, K. L.; Meehan, M. J.; Melnik, A. V.; Menezes, R. C.; Montoya-Giraldo, Y. A.; Nguyen, N. H.; Nothias, L. F.; Nothias-Esposito, M.; Panitchpakdi, M.; Petras, D.; Quinn, R.; Sikora, N.; van der Hooft, J. J. J.; Vargas, F.; Vrbanac,

10.1101/750471 — bioinformatics — Posted on 2019-08-29

256 Lipid-derived electrophiles induce covalent modification and aggregation of Cu,Zn-superoxide dismutase in a hydrophobicity-dependent manner

Dantas, L. S.; Viviani, L. G.; Inague, A.; Piccirillo, E.; Rezende, L. R.; Ronsein, G. E.; Augusto, O.; Medeiros, M. H.; Amaral, A. T.; Miyamoto, S.

10.1101/740688 — biochemistry — Posted on 2019-08-29

257 RBA for eukaryotic cells: foundations and theoretical developments

Goelzer, A.; Fromion, V.

10.1101/750182 — systems biology — Posted on 2019-08-29

258 Heart-Brain Interactions Shape Somatosensory Perception and Evoked Potentials

Al, E.; Iliopoulos, F.; Forschack, N.; Nierhaus, T.; Grund, M.; Motyka, P.; Gaebler, M.; Vikulin, V. N.; Villringer, A.

10.1101/750315 — neuroscience — Posted on 2019-08-29

259 Adaptive Deep Brain Stimulation as an Advanced Parkinson’s disease Treatment (ADAPT): a pseudorandomised clinical trial

Pina-Fuentes, D.; van Dijk, M. J. M. C.; van Zijl, J. C.; Moes, H. R.; Oterdoom, M. D. L. M.; Little, S.; Brown, P.; Beudel, M.

10.1101/749903 — neuroscience — Posted on 2019-08-29

260 aMpLiTuDe MoDuLaTeD noise for tinnitus suppression in tonal and noise-like tinnitus

Schoisswohl, S.; Arnds, J.; Schecklmann, M.; Langguth, B.; Schlee, W.; Neff, P.

10.1101/749937 — neuroscience — Posted on 2019-08-29

261 Spooky interaction at a distance in cave and surface dwelling electric fishes

Fortune, E.; Andanar, N.; Madhav, M.; Jayakumar, R.; Cowan, N. J.; Bichuette, M. E.; Soares, D.

10.1101/747154 — neuroscience — Posted on 2019-08-29

262 Quantifying the cost of cognitive stability and flexibility

Papadopetraki, D.; Froboese, M. I.; Westbrook, A.; Zandbelt, B. B.; Cools, R.

10.1101/743120 — neuroscience — Posted on 2019-08-29

263 Prompt rewetting of drained peatlands reduces climate warming despite methane emissions

Günther, A.; Barthelmes, A.; Huth, V.; Joosten, H.; Jurasinski, G.; Koebsch, F.; Couwenberg, J.

10.1101/748830 — ecology — Posted on 2019-08-29

264 Non-junctional Cadherin3 regulates cell migration and contact inhibition of locomotion via domain-dependent opposing regulations of Rac1.

Ichikawa, T.; Stuckenholz, C.; Davidson, L. A.

10.1101/750752 — developmental biology — Posted on 2019-08-29

265 Interplay of disordered and ordered regions of a human small heat shock protein yields an ensemble of \"quasi-ordered\" states.

Clouser, A. F.; Baughman, H. E.; Basanta, B.; Guttman, M.; Nath, A.; Klevit, R. E.

10.1101/750646 — biochemistry — Posted on 2019-08-29

266 Functional characterization of fatty acyl desaturase Fads2 and Elovl5 elongase in the Boddart’s goggle-eyed goby, Boleophthalmus boddarti (Gobiidae) suggest an incapacity for long-chain polyunsaturated fatty acid biosynthesis

Soo, H.-J.; Chong, J.; Lau, N.-S.; Ting, S.-Y.; Sam, K.-K.; Kuah, M.-K.; Sim, Y. K.; Janaranjani, M.; Chong, A. S. C.

10.1101/751057 — zoology — Posted on 2019-08-29

267 Riluzole does not ameliorate disease caused by cytoplasmic TDP-43 in a mouse model of amyotrophic lateral sclerosis

Wright, A. L.; Le, S.; Mehta, P.; Della Gatta, P.; Berning, B. A.; Jacobs, K. R.; Gul, H.; San Gil, R.; Hedl, T. J.; Riddell, W. R.; Watson, O.; Keating, S. S.; Chung, R. S.; Atkin, J. D.; Lee, A.; Shi, B.; Blizzard, C. A.; Morsch, M.; Walker, A. K.

10.1101/749846 — neuroscience — Posted on 2019-08-29

268 Sex differences in the ability of corticostriatal oscillations to predict rodent alcohol consumption

Henricks, A. M.; Sullivan, E. D.; Dwiel, L. L.; Keus, K. M.; Adner, E. D.; Green, A. I.; Doucette, W. T.

10.1101/750711 — neuroscience — Posted on 2019-08-29

269 Sterol regulatory element binding protein and Sp1 is required for transcriptional activation of a freshwater carnivorous fish (Channa striata) elovl5 elongase

Goh, P.-T.; Kuah, M.-K.; Chew, Y.-S.; Teh, H.-Y.; Chong, A. S. C.

10.1101/751032 — molecular biology — Posted on 2019-08-29

270 The aminoalkylindole, BML-190, negatively regulates chitosan synthesis via the cAMP/PKA1 pathway in Cryptococcus neoformans

Maybruck, B. T.; Lam, W. C.; Specht, C.; Ilagan, M. X. G.; Donlin, M. J.; Lodge, J. K.

10.1101/751172 — microbiology — Posted on 2019-08-29

271 Isolation and functional characterisation of lamina propria leukocytes from helminth-infected, murine small intestine

Webster, H. C.; Andrusaite, A. T.; Milling, S. W. F.; Perona-Wright, G.

10.1101/750786 — immunology — Posted on 2019-08-29

272 NK cell activation by RSV-specific antibodies is decreased in infants with severe respiratory infections and correlates with Fc-glycosylation

van Erp, E. A.; Lakerveld, A. J.; de Graaf, E.; Larsen, M. D.; Schepp, R. M.; Hipgrave Ederveen, A. L.; Ahout, I. M. L.; de Haan, C. A. M.; Wuhrer, M.; Luytjes, W.; Ferwerda, G.; Vidarsson, G.; van Kasteren, P. B.

10.1101/750141 — immunology — Posted on 2019-08-29

273 Antibiotic Resistance Increases Evolvability and Maximizes Opportunities Across Fitness Landscapes

Spagnolo, F.; Dykhuizen, D. E.

10.1101/750729 — evolutionary biology — Posted on 2019-08-29

274 Diffusion tubes: a method for the mass culture of ctenophores and other pelagic marine invertebrates

Patry, W. L.; Bubel, M. K.; Hansen, C.; Knowles, T.

10.1101/751099 — developmental biology — Posted on 2019-08-29

275 Evolution of an amniote-specific mechanism for modulating ubiquitin signalling via phosphoregulation of the E2 enzyme UBE2D3

Roman-Trufero, M.; Ito, C. M.; Pedebos, C.; Magdalou, I.; Wang, Y.-F.; Karimi, M. M.; Moyon, B.; Webster, Z.; Di Gregorio, A.; Azuara, V.; Khalid, S.; Speck, C.; Rodriguez, T.; Dillon, N.

10.1101/750505 — developmental biology — Posted on 2019-08-29

276 Clathrin’s adaptor interaction sites are repurposed to stabilize microtubules during mitosis

Rondelet, A.; Lin, Y.-C.; Porfetye, A. T.; Thakur, H. C.; Hecker, A.; Brinkert, P.; Schmidt, N.; Bendre, S.; Mueller, F.; Widlund, P. O.; Bange, T.; Hiller, M.; Vetter, I. R.; Bird, A. W.

10.1101/750034 — cell biology — Posted on 2019-08-29

277 KDDANet-a novel computational framework for systematic uncovering hidden gene interactions underlying known drug-disease associations

Yu, H.; Lu, L.; Chen, M.; Li, H.; Li, C.; Zhang, J.

10.1101/749762 — bioinformatics — Posted on 2019-08-29

278 Multi-shanks SiNAPS Active Pixel Sensor CMOSprobe: 1024 simultaneously recording channels for high-density intracortical brain mapping

Boi, F.; Perentos, N.; Lecomte, A.; Schwesig, G.; Zordan, S.; Sirota, A.; Berdondini, L.; Angotzi, G. N.

10.1101/749911 — bioengineering — Posted on 2019-08-29

279 Multi-modal communication: Song sparrows increase signal redundancy in noise

Akcay, C.; Beecher, M. D.

10.1101/750307 — animal behavior and cognition — Posted on 2019-08-29

280 Impact of C-terminal amino acid composition on protein expression in bacteria

Weber, M.; Burgos, R.; Yus, E.; Yang, J.-S.; Lluch-Senar, M.; Serrano, L.

10.1101/751305 — systems biology — Posted on 2019-08-29

281 Insight into the genomic history of the Near East from whole-genome sequences and genotypes of Yemenis

Haber, M.; Saif-Ali, R.; Alhabori, M.; Chen, Y.; Platt, D. E.; Tyler-Smith, C.; Xue, Y.

10.1101/749341 — genomics — Posted on 2019-08-29

282 Single-cell transcriptomics reveals temporal dynamics of critical regulators of germ cell fate during mouse sex determination

Mayere, C.; Neirijnck, Y.; Sararols, P.; Stevant, I.; Kühne, F.; Chassot, A.-A.; Chaboissier, M.-C.; Dermitzakis, E.; Nef, S.

10.1101/747279 — developmental biology — Posted on 2019-08-29

283 BANDITS: Bayesian differential splicing accounting for sample-to-sample variability and mapping uncertainty

Tiberi, S.; Robinson, M.

10.1101/750018 — bioinformatics — Posted on 2019-08-29

284 High-performance chemical and light-inducible recombinases in mammalian cells and mice

Weinberg, B. H.; Cho, J. H.; Agarwal, Y.; Pham, H.; Caraballo, L. D.; Walkosz, M.; Ortega, C.; Trexler, M.; Tague, N.; Law, B.; Benman, W. K. J.; Letendre, J.; Beal, J.; Wong, W. W.

10.1101/747121 — synthetic biology — Posted on 2019-08-29

285 Tertiary lymphoid tissue develops during normal aging in mice and humans

Ligon, M. M.; Wang, C.; Jennings, Z.; Schulz, C.; DeJong, E. N.; Lowder, J. L.; Bowdish, D. M. E.; Mysorekar, I. U.

10.1101/749200 — immunology — Posted on 2019-08-29

286 The periphery and the core properties explain the omnigenic model in the human interactome

Wang, B.; Glass, K.; Rohl, A.; Santolini, M.; Croteau-Chonka, D. C.; Weiss, S. T.; Raby, B.; Sharma, A.

10.1101/749358 — systems biology — Posted on 2019-08-29

287 Experimental evolution reveals the genetic basis and systems biology of superoxide stress tolerance

Tan, J.; Olson, C. A.; Park, J. H.; Sastry, A. V.; Phaneuf, P.; Yang, L.; Szubin, R.; Hefner, Y.; Feist, A. M.; Palsson, B. O.

10.1101/749887 — systems biology — Posted on 2019-08-29

288 Novel Quorum Sensing Activity in East Antarctic Soil Bacteria

Wong, S. Y.; Charlesworth, J. C.; Benaud, N.; Burns, B. P.; Ferrari, B. C.

10.1101/749861 — microbiology — Posted on 2019-08-29

289 Functional effects of chimeric antigen receptor co-receptor signaling domains in human Tregs

Dawson, N. A.; Rosado Sanchez, I.; Novakovsky, G.; Fung, V.; Huang, Q.; McIver, E.; Sun, G.; Gillies, J.; Speck, M.; Orban, P. C.; Mojibian, M.; Levings, M. K.

10.1101/749721 — immunology — Posted on 2019-08-29

290 Large-scale Genetic Analysis Identifies 66 Novel Loci for Asthma

Han, Y.; Jia, Q.; Shafiei Jahani, P.; Hurrell, B. P.; Pan, C.; Huang, P.; Gukasyan, J.; Woodward, N. C.; Eskin, E.; Gilliland, F.; Akbari, O.; Hartiala, J. A.; Allayee, H.

10.1101/749598 — genetics — Posted on 2019-08-29

291 Population-specific sequence and expression differentiation in Europeans

Jiang, X.; Assis, R.

10.1101/749499 — evolutionary biology — Posted on 2019-08-29

292 Climatic sensitivity of species’ vegetative and reproductive phenology in a Hawaiian montane wet forest

Pau, S.; Cordell, S.; Ostertag, R.; Sack, L.; Inman-Narahari, F.

10.1101/749614 — ecology — Posted on 2019-08-29

293 Pitching single focus confocal data analysis one photon at a time with Bayesian nonparametrics

Tavakoli, M.; Jazani, S.; Sgouralis, I.; Shafraz, O. M.; Donaphon, B.; Sivasankar, S.; Levitus, M.; Presse, S.

10.1101/749739 — biophysics — Posted on 2019-08-29

294 Variant calling for cpn60 barcode sequence-based microbiome profiling

Vancuren, S. J.; Hill, J. E.

10.1101/749267 — bioinformatics — Posted on 2019-08-29

295 Microbial Community Dissimilarity for Source Tracking with Application in Forensic Studies

Carter, K.; Lu, M.; Jiang, H.; An, L.

10.1101/749671 — bioinformatics — Posted on 2019-08-29

296 Reducing module size bias of participation coefficient

Pedersen, M.; Omidvarnia, A.; Shine, J. M.; Jackson, G. D.; Zalesky, A.

10.1101/747162 — systems biology — Posted on 2019-08-29

297 Short-term plasticity at Purkinje to deep cerebellar nuclear neuron synapses supports a slow gain-control mechanism enabling scaled linear encoding over second-long time windows

Pedroarena, C. M.

10.1101/749259 — neuroscience — Posted on 2019-08-29

298 Functional genetic validation of key genes conferringinsecticide resistance in the major African malaria vector,Anopheles gambiae

Adolfi, A.; Poulton, B.; Anthousi, A.; Macilwee, S.; Ranson, H.; Lycett, G.

10.1101/749457 — molecular biology — Posted on 2019-08-29

299 Stable Engraftment of a Human Gut Bacterial Microbiome in Double Humanized BLT-mice

Daharsh, L.; Ramer-Tait, A.; Li, Q.

10.1101/749093 — microbiology — Posted on 2019-08-29

300 Cloning of Two Gene Clusters Involved in the Catabolism of 2,4-Dinitrophenol by Paraburkholderia sp. Strain KU-46 and Characterization of the Initial DnpAB Enzymes and a Two-Component Monooxygenase DnpC1C2

Yamamoto, T.; Liu, Y.; Kohaya, N.; Hasegawa, Y.; Lau, P. C. K.; Iwaki, H.

10.1101/749879 — microbiology — Posted on 2019-08-29

301 Genome sequencing and neurotoxin diversity of a wandering spider Pardosa pseudoannulata (pond wolf spider)

Yu, N.; Li, J.; Liu, M.; Huang, L.; Bao, H.; Yang, Z.; Zhang, Y.; Gao, H.; Wang, Z.; Yang, Y.; Van Leeuwen, T.; Millar, N. S.; Liu, Z.

10.1101/747147 — genomics — Posted on 2019-08-29

302 The Ficus erecta genome to identify the Ceratocystis canker resistance gene for breeding programs in common fig (F. carica)

Shirasawa, K.; Yakushiji, H.; Nishimura, R.; Morita, T.; Jikumaru, S.; Ikegami, H.; Toyoda, A.; Hirakawa, H.; Isobe, S.

10.1101/749788 — genomics — Posted on 2019-08-29

303 The current obesity “epidemic”: segregation of familial genetic risk in NHANES cohort supports a major role for large genetic effects

Jenkins, A. B.; Batterham, M.; Campbell, L. V.

10.1101/749606 — genetics — Posted on 2019-08-29

304 Sensitivity in the antioxidant system of discus fish (Symphysodon spp.) to cold temperature: evidence for species-specific cold resistance

jin, s. r.; wen, b.; Chen, Z.; gao, j. z.; wang, l.; liu, y.; liu, h. p.

10.1101/749705 — ecology — Posted on 2019-08-29

305 Accelerating Inflammation Resolution to Counteract Chemical Cutaneous Injury

Achanta, S.; Chintagari, N. R.; Balakrishna, S.; Liu, B.; Jordt, S. E.

10.1101/749184 — pharmacology and toxicology — Posted on 2019-08-29

306 Defining variation in pre-human ecosystems can guide conservation: An example from a Caribbean coral reef

O'Dea, A.; Lepore, M.; Altieri, A.; Chan, M.; Morales, J.; Munoz, N.-H.; Pandolfi, J.; Toscano, M.; Zhao, J.-x.; Dillon, E.

10.1101/749382 — paleontology — Posted on 2019-08-29

307 Estimating rates and patterns of diversification with incomplete sampling: A case study in the rosids

Sun, M.; Folk, R.; Gitzendanner, M. A.; Guralnick, R. P.; Soltis, P. S.; Chen, Z.; Soltis, D. E.

10.1101/749325 — evolutionary biology — Posted on 2019-08-29

308 A multilayer perspective for inferring spatial and social functioning in animal movement networks

Mourier, J.; Ledee, E. J. I.; Jacoby, D. M. P.

10.1101/749085 — animal behavior and cognition — Posted on 2019-08-29

309 Associations of adverse lifetime experiences with brain structure in 7003 UK Biobank participants

Gheorghe, D. A.; Li, C.; Gallacher, J. E.; Bauermeister, S.

10.1101/749077 — neuroscience — Posted on 2019-08-29

310 Sag currents are a major contributor to human pyramidal cell intrinsic differences across cortical layers and between individuals

Moradi-Chameh, H.; Wang, L.; Rich, S.; Zhang, L.; Carlen, P. L.; Tripathy, S.; Valiante, T. A.

10.1101/748988 — neuroscience — Posted on 2019-08-29

311 Are Sources of EEG and MEG rhythmic activity the same? An analysis based on BC-VARETA

Yuan, Q.; Riaz, U.; Razzaq, F. A.; Valdes-Sosa, P. A.

10.1101/748996 — neuroscience — Posted on 2019-08-29

312 ZapA tetramerization is required for midcell localization and ZapB interaction in Escherichia coli

Meiresonne, N. Y.; den Blaauwen, T.

10.1101/749176 — microbiology — Posted on 2019-08-29

313 The choreography of human attraction: physiological synchrony in a blind date setting

Prochazkova, E.; Sjak-Shie, E. E.; Behrens, F.; Lindh, D.; Kret, M. E.

10.1101/748707 — physiology — Posted on 2019-08-29

314 Reassessing the validity of slow-wave dynamics as a proxy for NREM sleep homeostasis

Hubbard, J.; Gent, T. C.; Hoekstra, M. M.; Emmenegger, Y.; Mongrain, V.; Landolt, H.-P.; Adamantidis, A. R.; Franken, P.

10.1101/748871 — neuroscience — Posted on 2019-08-29

315 ORAL HEALTH BEHAVIOUR PERCEPTION SCALE APPLIED AMONG A SAMPLE OF PORTUGUESE ADOLESCENTS

Veiga, N.; Amaral, O.; Correia, M. J.; Coelho, I.

10.1101/750240 — scientific communication and education — Posted on 2019-08-28

316 Retention and predictors of attrition among patients who started antiretroviral therapy in Zimbabwes National Antiretroviral Therapy Programme between 2012 and 2015

Makurumidze, R.; Mutasa-Apollo, T.; Decroo, T.; Choto, R. C.; Takarinda, K. C.; Dzangare, J.; Lynen, L.; Van Damme, W.; Hakim, J.; Magure, T.; Mugurungi, O.; Rusakaniko, S.

10.1101/750232 — scientific communication and education — Posted on 2019-08-28

317 Incorporating evaporative water loss into bioenergetic models of hibernation to test for relative influence of host and pathogen traits on white-nose syndrome

Haase, C.; Fuller, N.; Hranac, C. R.; Hayman, D. T. S.; McGuire, L. P.; Norquay, K. J. O.; Silas, K. A.; Willis, C. K. R.; Plowright, R. K.; Olson, S. H.

10.1101/750257 — physiology — Posted on 2019-08-28

318 A novel human monoclonal antibody specific to the A33 glycoprotein recognizes colorectal cancer and inhibits metastasis

Murer, P.; Pluess, L.; Neri, D.

10.1101/748962 — pharmacology and toxicology — Posted on 2019-08-28

319 Whatman FTA(R) cards versus plasma specimens for the quantitation of HIV-1 RNA using two Real-Time PCR assays

Yacouba, A.; Congo, M.; Dioma, G. K.; Somlare, H.; Coulidiaty, D.; Ouattara, K.; Sangare, L.

10.1101/748061 — molecular biology — Posted on 2019-08-28

320 Structure-guided design of a synthetic mimic of an EPCR-binding PfEMP1 protein

Barber, N. M.; Lau, C.; Turner, L.; Watson, G.; Thrane, S.; Lusingu, J. P. A.; Lavstsen, T.; Higgins, M. K.

10.1101/749432 — microbiology — Posted on 2019-08-28

321 Structural elements that modulate the substrate specificity of plant purple acid phosphatases: avenues for improved phosphorus acquisition in crops

Feder, D.; McGeary, R. P.; Mitic, N.; Lonhienne, T.; Furtado, A.; Schulz, B. L.; Henry, R. J.; Schmidt, S.; Guddat, L. W.; Schenk, G.

10.1101/749564 — biochemistry — Posted on 2019-08-28

322 Long distance retrograde degeneration of the retino-geniculo-cortical pathway in homonymous hemianopia

Rajanala, A. P.; Shariati, M. A.; Liao, Y. J.

10.1101/750208 — neuroscience — Posted on 2019-08-28

323 Neural measures of subsequent memory reflect endogenous variability in cognitive function

Weidemann, C. T.; Kahana, M. J.

10.1101/576173 — neuroscience — Posted on 2019-08-28

324 Integrating Comprehensive Functional Annotations to Boost Power and Accuracy in Gene-Based Association Analysis

Quick, C.; Wen, X.; Abecasis, G.; Boehnke, M.; Kang, H. M.

10.1101/732404 — genetics — Posted on 2019-08-28

325 Marker-assisted introgression of multiple resistance genes confers broad spectrum resistance against bacterial leaf blight and blast diseases in Putra-1 rice variety

Rafii, M. Y.; Chukwu, S. C.; Ramlee, S. I.; Ismail, S. I.; Oladosu, Y. A.; Muhammad, I.

10.1101/750216 — genetics — Posted on 2019-08-28

326 Distinguishing among complex evolutionary models using unphased whole-genome data through Approximate Bayesian Computation

Ghirotto, S.; Vizzari, M. T.; Tassi, F.; Barbujani, G.; Benazzo, A.

10.1101/507897 — genetics — Posted on 2019-08-28

327 Artificial Intelligence for Ecological and Evolutionary Synthesis

Desjardins-Proulx, P.; Poisot, T.; Gravel, D.

10.1101/161125 — ecology — Posted on 2019-08-28

328 Prognostic value of Red Blood Cell Distribution Width in Acute Kidney Injury Patients:A Systematic Review and Meta-analysis

Liu, Z.; Wang, S.; Yao, X.; Xing, J.

10.1101/750190 — cell biology — Posted on 2019-08-28

329 Novel Conformation Specific Inhibitors of Activated GTPases reveal Ras-dependency of Patient-Derived Cancer Organoids

Wiechmann, S.; Maisonneuve, P.; Grebbin, B. M.; Hoffmeister, M.; Kaulich, M.; Clevers, H.; Rajalingam, K.; Kurinov, I.; Farin, H. F.; Sicheri, F.; Ernst, A.

10.1101/548750 — cancer biology — Posted on 2019-08-28

330 Gut-Liver physiomimetics reveal paradoxical modulation of IBD-related inflammation by short-chain fatty acids

Trapecar, M.; Communal, C.; Velazquez, J.; Maass, C. A.; Huang, Y.-J.; Schneider, K.; Wright, C. W.; Eng, G.; Yilmaz, O.; Trumper, D. L.; Griffith, L. G.

10.1101/706812 — bioengineering — Posted on 2019-08-28

331 Flexible representation of higher-dimensional cognitive variables with grid cells

Klukas, M.; Lewis, M.; Fiete, I.

10.1101/578641 — neuroscience — Posted on 2019-08-28

332 Bayesian Estimation of Population Size Changes by Sampling Tajima’s Trees

Palacios, J. A.; Veber, A.; Cappello, L.; Wang, Z.; Wakeley, J.; Ramachandran, S.

10.1101/605352 — genetics — Posted on 2019-08-28

333 Cryptic asexual reproduction in Caenorhabditis nematodes

Lamelza, P.; Young, J. M.; Noble, L. M.; Isakharov, A.; Palanisamy, M.; Rockman, M. V.; Malik, H. S.; Ailion, M.

10.1101/588152 — evolutionary biology — Posted on 2019-08-28

334 Metadata-Guided Visual Representation Learning for Biomedical Images

Spiegel, S.; Hossain, I.; Ball, C.; Zhang, X.

10.1101/725754 — bioinformatics — Posted on 2019-08-28

335 Computational design of a protein family that adopts two well-defined and structurally divergent de novo folds

Wei, K. Y.; Moschidi, D.; Bick, M. J.; Nerli, S.; McShan, A. C.; Carter, L. P.; Huang, P.-S.; Fletcher, D. A.; Sgourakis, N. G.; Boyken, S. E.; Baker, D.

10.1101/597161 — biochemistry — Posted on 2019-08-28

336 Robust characterization of two distinct glutarate sensing transcription factors found in Pseudomonas putida L-lysine metabolism

Thompson, M. G.; Costello, Z.; Hummel, N. F. C.; Cruz-Morales, P.; Blake-Hedges, J. M.; Krishna, R. N.; Skyrud, W.; Pearson, A. N.; Incha, M. R.; Shih, P. M.; Garcia-Martin, H.; Keasling, J. D.

10.1101/557751 — synthetic biology — Posted on 2019-08-28

337 Reconstruction of the phase dynamics of the somitogenesis clock oscillator

Morales, L. J.; Dale, K. J.; Murray, P. J.

10.1101/743724 — developmental biology — Posted on 2019-08-28

338 Frequency specific network effective connectivity: ERP analysis of recognition memory process by directed connectivity estimators

Darvishi Bayazi, M. J.; Motie Nasrabadi, A.; Curran, T.

10.1101/739573 — bioengineering — Posted on 2019-08-28

339 Do mechanical strain magnitude and rate drive bone adaptation in adult women? A 12-month prospective study.

Troy, K.; Mancuso, M.; Johnson, J.; Wu, Z.; Schnitzer, T. J.; Butler, T. A.

10.1101/421156 — physiology — Posted on 2019-08-28

340 Drug screens of NGLY1 Deficiency worm and fly models reveal catecholamine, NRF2 and anti-inflammatory pathway activation as potential clinical approaches

Iyer, S.; Mast, J. D.; Tsang, H.; Rodriguez, T. P.; DiPrimio, N.; Prangley, M.; Sam, F. S.; Parton, Z. M.; Perlstein, E.

10.1101/563478 — pharmacology and toxicology — Posted on 2019-08-28

341 Bagging Improves Reproducibility of Functional Parcellation of the Human Brain

Nikolaidis, A.; Solon Heinsfeld, A.; Xu, T.; Bellec, P.; Vogelstein, J.; Milham, M.

10.1101/343392 — neuroscience — Posted on 2019-08-28

342 PilT and PilU are homohexameric ATPases that coordinate to retract type IVa pili

Chlebek, J. L.; Hughes, H. Q.; Ratkiewicz, A. S.; Rayyan, R.; Wang, J. C.-Y.; Herrin, B. E.; Dalia, T. N.; Biais, N.; Dalia, A. B.

10.1101/634048 — microbiology — Posted on 2019-08-28

343 Bacterial longevity requires protein synthesis and a stringent response

Yin, L.; Ma, H.; Nakayasu, E. S.; Payne, S. H.; Morris, D. R.; Harwood, C. S.

10.1101/628826 — microbiology — Posted on 2019-08-28

344 A biophysical model uncovers the size distribution of migrating cell clusters across cancer types

Bocci, F.; Kumar Jolly, M.; Onuchic, J. N.

10.1101/563049 — biophysics — Posted on 2019-08-28

345 GenFam: A web application and database for gene family-based classification and functional enrichment analysis

Bedre, R.; Mandadi, K.

10.1101/272187 — bioinformatics — Posted on 2019-08-28

346 Motif elucidation in ChIP-seq datasets with a knockout control

Denisko, D.; Viner, C.; Hoffman, M.

10.1101/721720 — bioinformatics — Posted on 2019-08-28

347 Combinatory therapy targeting mitochondrial oxidative phosphorylation improves efficacy of IDH mutant inhibitors in acute myeloid leukemia

Stuani, L.; Sarry, J.-E.

10.1101/749580 — cancer biology — Posted on 2019-08-28

348 Targeting effector pathways in RAC1P29S-driven malignant melanoma

Uribe-Alvarez, C.; Guerrero-Rodriguez, S. L.; Rhodes, J.; Cannon, A.; Chernoff, J.; Araiza-Olivera, D.

10.1101/750489 — cancer biology — Posted on 2019-08-28

349 From intent to implementation: Factors affecting public involvement in life science research

Burns, J. A.; Korzec, K.; Dorris, E. R.

10.1101/748889 — scientific communication and education — Posted on 2019-08-28

350 The Alzheimer’s disease associated bacterial protease RgpB from P. gingivalis activates the alternative β-secretase meprin β thereby increasing Aβ generation

Armbrust, F.; Colmorgen, C.; Pietrzik, C.; Becker-Pauly, C.

10.1101/748814 — neuroscience — Posted on 2019-08-28

351 Parallel channels for motion feature extraction in the pretectum and tectum of larval zebrafish

Wang, K.; Hinz, J.; Zhang, Y.; Thiele, T. R.; Arrenberg, A. B.

10.1101/748913 — neuroscience — Posted on 2019-08-28

352 Face Selective Neural Activity: comparison between fixed and free viewing

Auerbach-Asch, C. R.; Bein, O.; Deouell, L. Y.

10.1101/748756 — neuroscience — Posted on 2019-08-28

353 Unbiased Map of Transcription Termination Sites in Haloferax volcanii reveals manifold termination patterns

Berkemer, S. J.; Maier, L.-K.; Amman, F.; Bernhart, S. H.; Wörtz, J.; Märkle, P.; Pfeiffer, F.; Stadler, P. F.; Marchfelder, A.

10.1101/748780 — molecular biology — Posted on 2019-08-28

354 The global phylogenetic landscape and nosocomial spread of the multidrug-resistant opportunist Stenotrophomonas maltophilia

10.1101/748954 — genomics — Posted on 2019-08-28

355 Harnessing natural modularity of cellular metabolism to design a modular chassis cell for a diverse class of products by using goal attainment optimization

Sergio, G.; Trinh, C. T.

10.1101/748350 — synthetic biology — Posted on 2019-08-28

356 Integrating When and What Information in the Left Parietal Lobe Allows Language Rule Generalization

Orpella, J.; Ripolles, P.; Ruzzoli, M.; Amengual, J.; Callejas, A.; Martinez-Alvarez, A.; Soto-Faraco, S.; de Diego-Balaguer, R.

10.1101/747816 — neuroscience — Posted on 2019-08-28

357 The fasciola cinereum of the hippocampus is important in the acquisition, but not the retrieval, of visual contextual memory

Park, S.-B.; Yoo, S.-W.; Jung, H.-S.; Lim, H.-Y.; Lee, E.; Sun, W.; Lee, I.

10.1101/748301 — neuroscience — Posted on 2019-08-28

358 Dysbiosis personalizes fitness effect of antibiotic resistance in the mammalian gut

Cardoso, L. L.; Durao, P.; Amicone, M.; Gordo, I.

10.1101/748897 — evolutionary biology — Posted on 2019-08-28

359 Genetic variation in parental effects contribute to the evolutionary potential of prey responses to predation risk

Tigreros, N.; Agrawal, A. A.; Thaler, J. S.

10.1101/748251 — evolutionary biology — Posted on 2019-08-28

360 Computational approaches for parametric imaging of dynamic PET data

Crisci, S.; Piana, M.; Ruggiero, V.; Scussolini, M.

10.1101/748806 — bioengineering — Posted on 2019-08-28

361 Extracellular electron uptake in Methanosarcinales is independent of multiheme c-type cytochromes

Yee, M. O.; Rotaru, A.-E.

10.1101/747485 — microbiology — Posted on 2019-08-28

362 SeqBreed: a python tool to evaluate genomic prediction in complex scenarios

Perez-Enciso, M.; Ramirez-Ayala, L. C.; Zingaretti, L. M.

10.1101/748624 — genomics — Posted on 2019-08-28

363 Nanopore sequencing of the glucocerebrosidase (GBA) gene in a New Zealand Parkinsons disease cohort

Graham, O. E. E.; Pitcher, T. L.; Liau, Y.; Miller, A.; Dalrymple-Alford, J. C.; Anderson, T. J.; Kennedy, M. A.

10.1101/748335 — genetics — Posted on 2019-08-28

364 Comparative pathway enrichment analysis in gastrointestinal cell lines Caco-2, HT-29, HEPG2, and colon fibroblasts using a custom expression panel for tight-junction and cytoskeletal regulatory genes.

Robinson, J.

10.1101/747105 — cell biology — Posted on 2019-08-28

365 Model-driven generation of artificial yeast promoters

Smolke, C.; Kotopka, B.

10.1101/748616 — bioengineering — Posted on 2019-08-28

366 The tooth on-a-chip: a microphysiologic model system mimicking the pulp-dentin interface and its interaction with biomaterials

Miranda Franca, C.; Tahayeri, A.; Sousa Rodrigues, N.; Fedorsian, S.; Puppin-Rontani, R.; Ferracane, J.; Bertassoni, L. E.

10.1101/748053 — bioengineering — Posted on 2019-08-28

367 A novel methodology for defining stromal expression of atypical chemokine receptors in vivo

Hansell, C. A. H.; Love, S. R.; Pingen, M.; Wilson, G. J.; MacLeod, M.; Graham, G.

10.1101/748673 — immunology — Posted on 2019-08-28

368 Low frequency of pathogenic allelic variants in the 46,XY differences of sex development (DSD)-related genes in small for gestational age children with hypospadias

Leitao Braga, B.; Lisboa Gomes, N.; YUMIE NISHI, M.; LUCHEZE FREIRE, B.; LOCH BATISTA, R.; FERREIRA DE ASSIS FUNARI, M.; FRADE COSTA, E. M.; MARCONDES LERARIO, A.; D. FARIA JUNIOR, J. A.; DOMENICE, S.; LIMA JORGE, L. A.; BILHARINHO MENDONCA, B.

10.1101/748277 — genetics — Posted on 2019-08-28

369 Heterospecific song quality as social information for settlement decisions: an experimental approach in a wild bird

Morinay, J.; Forsman, J. T.; Doligez, B.

10.1101/748103 — ecology — Posted on 2019-08-28

370 Bacteria- and temperature-regulated peptides modulate beta-catenin signaling in Hydra

Taubenheim, J.; Willoweit-Ohl, D.; Knop, M.; Franzenburg, S.; Bosch, T. C. G.; Fraune, S.

10.1101/747303 — developmental biology — Posted on 2019-08-28

371 Electrophysiological evidence for impaired auditory sensory memory in Cystinosis despite typical sensory processing: An MMN investigation

Alves Francisco, A.; Foxe, J. J.; Horsthuis, D. J.; Molholm, S.

10.1101/747642 — neuroscience — Posted on 2019-08-28

372 LaeA controls citric acid production through regulation of a citrate exporter encoding cexA in Aspergillus luchuensis mut. kawachii

Kadooka, C.; Nakamura, E.; Mori, K.; Okutsu, K.; Yoshizaki, Y.; Takamine, K.; Goto, M.; Tamaki, H.; Futagami, T.

10.1101/748426 — microbiology — Posted on 2019-08-28

373 The genome of a subterrestrial nematode reveals an evolutionary strategy for adaptation to heat

Weinstein, D. J.; Allen, S. E.; Lau, M. C. Y.; Erasmus, M.; Asalone, K. C.; Walters-Conte, K.; Deikus, G.; Sebra, R.; Borgonie, G.; van Heerden, E.; Onstott, T. C.; Bracht, J. R.

10.1101/747584 — genomics — Posted on 2019-08-28

374 Dissecting adaptive traits with nested association mapping: Genetic architecture of inflorescence morphology in sorghum

Olatoye, M.; Hu, Z.; Morris, G. P.

10.1101/748681 — genetics — Posted on 2019-08-28

375 Bivariate analysis of barley scald resistance with relative maturity reveals a new major QTL on chromosome 3H

Zhang, X.; Ovenden, B.; Orchard, B.; Zhou, M.; Park, R. F.; Singh, D.; Milgate, A.

10.1101/748368 — genetics — Posted on 2019-08-28

376 Reconstruction of nine thousand years of agriculture-based diet and impact on human genetic diversity in Asia

Raj, S. M.; Pei, A.; Foll, M.; Schlamp, F.; Excoffier, L.; Fuller, D. Q.; Kivisild, T.; Clark, A. G.

10.1101/747709 — genetics — Posted on 2019-08-28

377 Transcriptome analysis reveals the difference between \"healthy\" and \"common\" aging and their connection with age-related diseases

Zeng, L.; Yang, J.; Peng, S.; Zhu, J.; Zhang, B.; Suh, Y.; Tu, Z.

10.1101/747956 — genetics — Posted on 2019-08-28

378 The NanoZoomer Connectomics Pipeline for Tracer Injection Studies of the Marmoset Brain

Woodward, A.; Gong, R.; Abe, H.; Nakae, K.; Hata, J.; Skibbe, H.; Yamaguchi, Y.; Ishii, S.; Okano, H.; Yamamori, T.; Ichinohe, N.

10.1101/748376 — neuroscience — Posted on 2019-08-28

379 Improved motion correction of submillimetre 7T fMRI time series with boundary-based registration (BBR)

Huang, P.; Carlin, J. D.; Henson, R. N.; Correia, M. M.

10.1101/747386 — neuroscience — Posted on 2019-08-28

380 Integrating the metabolic processes of Escherichia coli with virulence by decreasing glucose availability, inhibiting the acetyl-CoA carboxylase subunit accA with asRNA, and through the quantification of the Lux-S gene

Hillman, T.

10.1101/747980 — microbiology — Posted on 2019-08-28

381 Exogenous alginate protects Staphylococcus aureus from killing by Pseudomonas aeruginosa

Price, C. E.; Brown, D. G.; Limoli, D.; Phelan, V.; O'Toole, G.

10.1101/748459 — microbiology — Posted on 2019-08-28

382 Female resource limitation does not make the opportunity for selection more female biased.

martinossi-allibert, i.; Liljestrand Ronn, J.; Immonen, E.

10.1101/748657 — evolutionary biology — Posted on 2019-08-28

383 Maintenance of High Inbreeding Depression in Selfing Populations: Effects of Coupling of Early- and Late-Acting Mutations

Sakai, S.

10.1101/748699 — evolutionary biology — Posted on 2019-08-28

384 Local design principles at hippocampal synapsesrevealed by an energy-information trade-off

Mahajan, G.; Nadkarni, S.

10.1101/748400 — neuroscience — Posted on 2019-08-28

385 Place cell map genesis via competitive learning and conjunctive coding in the dentate gyrus

Kim, S.; Jung, D.; Royer, S.

10.1101/748640 — neuroscience — Posted on 2019-08-28

386 BISON: Brain tISue segmentatiON pipeline using T1-weighted magnetic resonance images and a random forests classifier

Dadar, M.; Collins, D. L.

10.1101/747998 — neuroscience — Posted on 2019-08-28

387 Convergence of DNA methylation profiles in a novel environment in the reef coral Porites astreoides

Dimond, J. L.; Roberts, S. B.

10.1101/747840 — molecular biology — Posted on 2019-08-28

388 Culture under normoxic conditions and enhanced virulence of phase II Coxiella burnetii transformed with a RSF1010-based shuttle vector

Luo, S.; He, Z.; Sun, Z.; Yu, Y.; Jiang, Y.; Tong, Y.-G.; Song, L.

10.1101/747220 — microbiology — Posted on 2019-08-28

389 Enhanced cytokine responsiveness in natural killer cells from a pilot cohort of uninfected seronegative women exposed to hepatitis C virus contaminated anti-D immunoglobulin

Robinson, M. W.; Keane, C.; Needham, M.; Roche, G.; Wallace, E.; Connell, J.; de Gascun, C. F.; Naik, A.; Fanning, L. J.; Gardiner, C.; Houlihan, D. D.; O'Farrelly, C.

10.1101/747436 — immunology — Posted on 2019-08-28

390 Oral administration of an anti-CfaE secretory IgA antibody protects against Enterotoxigenic Escherichia coli diarrheal disease in a non-human primate model

Stoppato, M.; Gaspar, C.; Regeimbal, J.; Nunez, G.; giuntini, s.; Gawron, M. A.; Pondish, J. R.; Martin, J. C.; Schneider, M.; Schiller, Z. A.; Klempner, M.; Cavacini, L. A.; Wang, Y.

10.1101/748442 — immunology — Posted on 2019-08-28

391 Impact of ultrasonography on identifying noninvasive prenatal screening false-negative aneuploidy

Li, W.; Zeng, F.; Fan, B.; Yu, N.; Wu, J.; Yang, Y.; Huang, H.; Li, S.-l.; Peng, Z.

10.1101/748269 — genetics — Posted on 2019-08-28

392 Coevolution alters predator life history traits, behavior and morphology in experimental microbial communities

Cairns, J.; Moerman, F.; Fronhofer, E. A.; Altermatt, F.; Hiltunen, T.

10.1101/748582 — evolutionary biology — Posted on 2019-08-28

393 Higher order interactions and coexistence theory

Singh, P.; BARUAH, G.

10.1101/748517 — ecology — Posted on 2019-08-28

394 Plasmids persist in a microbial community by providing fitness benefit to multiple phylotypes

Li, L.; Dechesne, A.; Madsen, J. S.; Nesme, J.; Sorensen, S. J.; Smets, B. F.

10.1101/747964 — ecology — Posted on 2019-08-28

395 Modeling the assessment of the upper limb motor function impairment in children with cerebral palsy using sEMG and IMU sensors

Raouafi, S.; Raison, M.; Achiche, S.

10.1101/748202 — bioengineering — Posted on 2019-08-28

396 Approximate Bayesian computation of transcriptional pausing mechanisms

Douglas, J.; Kingston, R. L.; Drummond, A. J.

10.1101/748210 — systems biology — Posted on 2019-08-28

397 Dormancy as a spectrum measuring spore’s proximity to death and to replicative life

Maire, T.; Allertz, T.; Betjes, M. A.; Youk, H.

10.1101/747766 — systems biology — Posted on 2019-08-28

398 Autophagy mediates temporary reprogramming and dedifferentiation in plant somatic cells

Rodriguez, E.; Chevalier, J.; Olsen, J.; Ansbol, J.; Kapousidou, V.; Zuo, Z.; Svenning, S.; Loefke, C.; Koemeda, S.; Drozdowskyj, P. S.; Jez, J.; Durnberger, G.; Kuenzl, F.; Schutzbier, M.; Mechtler, K.; Lolle, S.; Dagdas, Y.; Petersen, M.

10.1101/747410 — plant biology — Posted on 2019-08-28

399 The oldest freshwater crabs: claws on dinosaur bones

Robin, N.; Van Bakel, B. W. M.; Hyzny, M.; Cincotta, A.; Garcia, G.; Charbonnier, S.; Godefroit, P.; Valentin, X.

10.1101/747535 — paleontology — Posted on 2019-08-28

400 A study of parietal-motor connectivity by intraoperative dual cortical stimulation

Cattaneo, L.; Giampiccolo, D.; Meneghelli, P.; Tramontano, V.; Sala, F.

10.1101/747337 — neuroscience — Posted on 2019-08-28

401 Regulation of defeat-induced social avoidance by medial amygdala DRD1 in male and female prairie voles

Tickerhoof, M. C.; Hale, L. H.; Smith, A. S.

10.1101/747923 — neuroscience — Posted on 2019-08-28

402 Genome sequencing for early-onset dementia: high diagnostic yield and frequent observation of multiple contributory alleles

Cochran, J. N.; McKinley, E. C.; Cochran, M.; Amaral, M. D.; Moyers, B. A.; Lasseigne, B. N.; Gray, D. E.; Lawlor, J. M. J.; Prokop, J. W.; Geier, E. G.; Holt, J. M.; Thompson, M. L.; Newberry, J. S.; Yokoyama, J. S.; Worthey, E. A.; Geldmacher, D. S.; Love, M. N.; Cooper, G. M.; Myers, R. M.; Roberson, E. D.

10.1101/748046 — neuroscience — Posted on 2019-08-28

403 Capsule Networks but not Classic CNNs Explain Global Visual Processing

Doerig, A.; Schmittwilken, L.; Sayim, B.; Manassi, M.; Herzog, M. H.

10.1101/747394 — neuroscience — Posted on 2019-08-28

404 Plasma membrane damage causes NLRP3 activation and pyroptosis during Mycobacterium tuberculosis infection

Beckwith, K. S.; Beckwith, M. S.; Ullmann, S.; Saetra, R. S. R.; Kim, H.; Marstad, A.; Asberg, S. E.; Strand, T. A.; Stenmark, H.; Flo, T. H.

10.1101/747014 — immunology — Posted on 2019-08-28

405 Somatic Mutations in Clonally Expanded T-lymphocytes in Patients with Chronic Graft-Versus-Host Disease

Park, G.; Mustjoki, S.

10.1101/747196 — immunology — Posted on 2019-08-28

406 Chromosome-level hybrid de novo genome assemblies as an attainable option for non-model organisms

Jaworski, C. C.; Allan, C. W.; Matzkin, L. M.

10.1101/748228 — genomics — Posted on 2019-08-28

407 When a phenotype is not the genotype: Implications of phenotype misclassification and pedigree errors in genomics-assisted breeding of sweetpotato

Gemenet, D. C.; De Boeck, B.; Pereira, G. D. S.; Kitavi, M. N.; Ssali, R. T.; Utoblo, O.; Swanckaert, J.; Carey, E.; Gruneberg, W.; Yada, B.; Yencho, C.; Mwanga, R. O. M.

10.1101/747469 — genetics — Posted on 2019-08-28

408 Sex chromosomes control vertical transmission of feminizing Wolbachia symbionts in an isopod

Becking, T.; Chebbi, M. A.; Giraud, I.; Moumen, B.; Laverre, T.; Caubet, Y.; Peccoud, J.; Gilbert, C.; Cordaux, R.

10.1101/747444 — evolutionary biology — Posted on 2019-08-28

409 Transition from background selection to associative overdominance promotes diversity in regions of low recombination

Gilbert, K. J.; Pouyet, F.; Excoffier, L.; Peischl, S.

10.1101/748004 — evolutionary biology — Posted on 2019-08-28

410 Free-ranging dogs are capable of comprehending complex human pointing cues.

Bhattacharjee, D.; Mandal, S.; Shit, P.; Varghese, M. G.; Vishnoi, A.; Bhadra, A.

10.1101/747246 — animal behavior and cognition — Posted on 2019-08-28

411 Independent evolution towards large body size in the distinctive Faroe Island mice

Wilches, R.; Beluch, W. H.; McConnell, E.; Tautz, D.; Chan, Y. F.

10.1101/747097 — evolutionary biology — Posted on 2019-08-28

412 Forest canopy resists plant invasions: a case study of Chromolaena odorata in sub-tropical Sal (Shorea robusta) forests of Nepal

Sharma, L. N.; Adhikari, B.; Watson, M. F.; Karna, B.; Paudel, E.; Shrestha, B. B.; Rijal, D. P.

10.1101/747287 — ecology — Posted on 2019-08-28

413 Interpretable Machine Learning for Perturbation Biology

Yuan, B.; Shen, C.; Luna, A.; Korkut, A.; Marks, D.; Ingraham, J.; Sander, C.

10.1101/746842 — systems biology — Posted on 2019-08-28

414 C-5 DNA methyltransferase 6 does not generate detectable DNA methylation in Leishmania

Cuypers, B.; Dumetz, F.; Meysman, P.; Laukens, K.; De Muylder, G.; Dujardin, J.-C.; Domagalska, M. A.

10.1101/747063 — molecular biology — Posted on 2019-08-28

415 NCOR1 AND OCT4 FACILITATE EARLY REPROGRAMMING BY CO-SUPPRESSING FIBROBLAST GENE EXPRESSION

Veenstra, G. J. C.; Mulder, K. W.; Penalosa Ruiz, G.

10.1101/747006 — developmental biology — Posted on 2019-08-28

416 Predicting changes in bee assemblages following state transitions in North American drylands

Kazenel, M. R.; Wright, K. W.; Bettinelli, J.; Griswold, T. L.; Whitney, K. D.; Rudgers, J. A.

10.1101/746990 — ecology — Posted on 2019-08-28

417 Heart Disease in a Mutant Mouse Model of Spontaneous Eosinophilic Myocarditis Maps to Three Highly Significant Loci

Zimmermann, N.; Gibbons, W. J.; Homan, S. M.; Prows, D. R.

10.1101/747519 — genetics — Posted on 2019-08-28

418 Neuron-glia interaction through Serotonin-BDNF-NGFR axis enables regenerative neurogenesis in Alzheimer’s model of adult zebrafish brain

Bhattarai, P.; Cosacak, M. I.; Mashkaryan, V.; Yilmaz, S.; Popova, S.; Govindarajan, N.; Brandt, K.; Zhang, Y.; Kizil, C.

10.1101/748970 — neuroscience — Posted on 2019-08-28

419 The CTCF Anatomy of Topologically Associating Domains

Nanni, L.; Wang, C.; Manders, F.; Groh, L.; Haro, P.; Oldenkamp, R.; Ceri, S.; Logie, C.

10.1101/746610 — genomics — Posted on 2019-08-28

420 Inference of Gene Regulatory Network Uncovers the Linkage Between Circadian Clock and Crassulacean Acid Metabolism in Kalanchoë fedtschenkoi

Moseley, R. C.; Motta, F.; Tuskan, G. A.; Haase, S.; Yang, X.

10.1101/745893 — plant biology — Posted on 2019-08-28

421 A machine learning and network framework to discover new indications for small molecules

Gilvary, C.; Elkhader, J.; Madhukar, N.; Henchcliffe, C.; Goncalves, M.; Elemento, O.

10.1101/748244 — pharmacology and toxicology — Posted on 2019-08-28

422 Origins and long-term patterns of copy-number variation in rhesus macaques

Thomas, G. W. C.; Wang, R. J.; Nguyen, J.; Harris, R. A.; Raveendran, M.; Rogers, J.; Hahn, M. W.

10.1101/749416 — evolutionary biology — Posted on 2019-08-28

423 The diagnostic chronic lymphocytic leukaemia genome by nanopore sequencing

Burns, A.; Disalvo-Williams, D.; Bruce, D.; Robbe, P.; Timbs, A.; Stamatopoulos, B.; Clifford, R.; Lopopolo, M.; Parkes, D.; Ridout, K.; Schuh, A.

10.1101/750059 — cancer biology — Posted on 2019-08-28

424 Serial coupling of chromatographic columns having orthogonal selectivity to improve the coverage of oxidised lipidome for mass spectrometry analysis

Thakker, A.

10.1101/741579 — biochemistry — Posted on 2019-08-28

425 Biphasic Response of Protein Kinase A to Cyclic Adenosine Monophosphate Triggers Distinct Epithelial Phenotypes

Fonseca, J. P.; Aslankoohi, E.; El-Samad, H.

10.1101/747030 — systems biology — Posted on 2019-08-28

426 The Integrator complex cleaves nascent mRNAs to attenuate transcription

Tatomer, D. C.; Elrod, N. D.; Liang, D.; Xiao, M.-S.; Jiang, J. Z.; Jonathan, M.; Huang, K.-L.; Wagner, E. J.; Cherry, S.; Wilusz, J. E.

10.1101/748319 — molecular biology — Posted on 2019-08-28

427 A mixture of three engineered phosphotriesterases enables rapid detoxification of the entire spectrum of known threat nerve agents

Despotovic, D.; Aharon, E.; Dubovetskyi, A.; Leader, H.; Ashani, Y.; Tawfik, D. S.

10.1101/748749 — biochemistry — Posted on 2019-08-28

428 Neutrophils Suppress Mucosal-Associated Invariant T Cells

Schneider, M.; Hannaway, R. F.; Lamichhane, R.; de la Harpe, S. M.; Tyndall, J. D.; Vernall, A. J.; Kettle, T.; Ussher, J. E.

10.1101/745414 — immunology — Posted on 2019-08-28

429 A new variance ratio metric to detect the timescale of compensatory dynamics

Zhao, L.; Wang, S.; Hallett, L. M.; Rypel, A.; Sheppard, L. W.; Castorani, M. C. N.; Shoemaker, L. G.; Cottingham, K. L.; Suding, K.; Reuman, D. C.

10.1101/742510 — ecology — Posted on 2019-08-28

430 A mathematical multi-organ model for bidirectional epithelial-mesenchymal transitions in the metastatic spread of cancer

Franssen, L. C.; Chaplain, M. A.

10.1101/745547 — cancer biology — Posted on 2019-08-28

431 Systematic identification of engineered methionines and oxaziridines for efficient, stable, and site-specific antibody bioconjugation

Elledge, S. K.; Tran, H. L.; Christian, A. H.; Steri, V.; Hann, B.; Toste, F. D.; Chang, C. J.; Wells, J. A.

10.1101/748160 — bioengineering — Posted on 2019-08-28

432 SILAC-based quantitative proteomics reveals pleiotropic, phenotypic modulation in primary murine macrophages infected with the protozoan pathogen Leishmania donovani

Smirlis, D.; Dingli, F.; Pescher, P.; Prina, E.; Loew, D.; Rachidi, N.; Spaeth, G. F.

10.1101/742841 — systems biology — Posted on 2019-08-28

433 Inhibition of Bruton’s tyrosine kinase reduces NF-kB and NLRP3 inflammasome activity preventing insulin resistance and microvascular disease

Purvis, G. S.; Collino, M.; Tavio, H. M.; Chiazza, F.; O'Riodan, C. E.; Zeboudj, L.; Guisot, N. E.; Bunyard, P.; Greaves, D. R.; Thiemermann, C.

10.1101/745943 — systems biology — Posted on 2019-08-28

434 Neural signatures of disordered multi-talker speech perception in adults with normal hearing

Parthasarathy, A.; Hancock, K. E.; Bennett, K.; DeGruttola, V.; Polley, D.

10.1101/744813 — neuroscience — Posted on 2019-08-28

435 Electrophysiological correlates of the flexible allocation of visual working memory resources

Salahub, C.; Lockhart, H. A.; Dube, B.; Al-Aidroos, N.; Emrich, S. M.

10.1101/746164 — neuroscience — Posted on 2019-08-28

436 IFN-independent cell cycle arrest and SAMHD1 activation following TLR4 activation in macrophages

Mlcochova, P.; Winstone, H.; Zuliani-Alvarez, L.; Gupta, R. K.

10.1101/741124 — microbiology — Posted on 2019-08-28

437 Host identity and symbiotic association affects the genetic and functional diversity of the clownfish-hosting sea anemone microbiome

Titus, B. M.; Laroche, R.; Rodriguez, E.; Wirshing, H.; Meyer, C. P.

10.1101/745760 — microbiology — Posted on 2019-08-28

438 Photo sensing and quorum sensing are integrated to control bacterial collective behaviors.

Mukherjee, S.; Jemielita, M.; Stergioula, V.; Tikhonov, M.; Bassler, B. L.

10.1101/747618 — microbiology — Posted on 2019-08-28

439 Residue retention promotes soil carbon accumulation in minimum tillage systems: Implications for conservation tillage

Li, Y.; Li, Z.; Chang, S. X.; Cui, S.; Jagadamma, S.; Zhang, Q.; Cai, Y.

10.1101/746354 — ecology — Posted on 2019-08-28

440 A comprehensive analysis of racial disparities in chemical biomarker concentrations in United States women, 1999-2014

Nguyen, V. K.; Kahana, A.; Heidt, J.; Polemi, K.; Kvasnicka, J.; Jolliet, O.; Colacino, J.

10.1101/746867 — bioinformatics — Posted on 2019-08-28

441 Population Structure, Stratification and Introgression of Human Structural Variation in the HGDP.

Almarri, M. A.; Bergstrom, A.; Prado-Martinez, J.; Dunham, A. S.; Chen, Y.; Tyler-Smith, C.; Xue, Y.

10.1101/746172 — genomics — Posted on 2019-08-28

442 Metabolic profiling suggests two sources of organic matter shape microbial activity, but not community composition, in New Zealand fjords

Tobias-Hunefeldt, S. P.; Wing, S. R.; Baltar, F.; Morales, S. E.

10.1101/745273 — ecology — Posted on 2019-08-28

443 ScalaFlux: a scalable approach to quantify fluxes in metabolic subnetworks

Millard, P.; Schmitt, U.; Kiefer, P.; Vorholt, J. A.; Heux, S.; Portais, J.-C.

10.1101/735308 — systems biology — Posted on 2019-08-28

444 A NEW TECHNIQUE AND DEVICE FOR CONTROLLED AND CONTINUOUS DRUG DELIVERY INTO THE BRAIN. A PROOF OF CONCEPT STUDY.

U.R, A.; VERMA, K.

10.1101/746966 — neuroscience — Posted on 2019-08-28

445 Generating Templates and Growth Charts for School-Aged Brain Development

Dong, H.-M.; Castellanos, F. X.; Yang, N.; Zhang, Z.; He, Y.; Zhang, L.; Xu, T.; Holmes, A.; Yeo, B. T. T.; Chen, F.; Wang, B.; Beckmann, C. F.; White, T. H.; Sporns, O.; Qiu, J.; Feng, T.; Chen, A.; Liu, X.; Chen, X.; Weng, X.; Milham, M.; Zuo, X.-N.

10.1101/747352 — neuroscience — Posted on 2019-08-28

446 Why are children so distractible? Development of attentional capacities and phasic arousal from childhood to adulthood.

Hoyer, R. S.; Elshafei, H.; Hemmerlin, J.; Bouet, R.; Bidet-Caulet, A.

10.1101/747527 — neuroscience — Posted on 2019-08-28

447 Visual working memory representations in visual and parietal cortex do not remap after eye movements

He, T.; Ekman, M.; Vandenbroucke, A. R. E.; de Lange, F.

10.1101/747329 — neuroscience — Posted on 2019-08-28

448 Developmental regulation of fear memories by an obesogenic high-saturated fat/high-sugar diet

Vega-Torres, J. D.; Reyes-Rivera, A. L.; Figueroa, J. D.

10.1101/748079 — neuroscience — Posted on 2019-08-28

449 Identifying a task-invariant cognitive reserve network using task potency

van Loenhoud, A. C.; Habeck, C.; van der Flier, W. M.; Ossenkoppele, R.; Stern, Y.

10.1101/747311 — neuroscience — Posted on 2019-08-28

450 Overlapping Genetic Architecture between Parkinson Disease and Melanoma

Dube, U.; Ibanez, L.; Budde, J. P.; Benitez, B. A.; Davis, A. A.; Harari, O.; Iles, M. M.; Law, M. H.; Brown, K. M.; 23andMe Research Team, ; Melanoma-Meta-analysis Consortium, ; Cruchaga, C.

10.1101/740589 — genetics — Posted on 2019-08-28

451 A geometry-based model describes lumen stability in epithelial cells

Vasquez, C. G.; Vachharajani, V. T.; Garzon-Coral, C.; Dunn, A. R.

10.1101/746792 — biophysics — Posted on 2019-08-28

452 RAD-Behavior (Recombining Atomized, Discretized, Behavior): A new framework for the quantitative analysis of behavioral execution

Ligon, R. A.; Scholes, E.; Sheehan, M. J.

10.1101/739151 — animal behavior and cognition — Posted on 2019-08-28

453 γ-Secretase controls the specification of astrocytes from oligodendrocyte precursor cells via Stat3

Hou, J.; Bi, H.; Zou, G.; Ye, Z.; Zhao, J.; Hu, Y.; Lu, J.; Chen, G.

10.1101/748772 — neuroscience — Posted on 2019-08-28

454 The CDK Pef1 and Protein Phosphatase 4 oppose each other for regulating cohesin binding to fission yeast chromosomes

Javerzat, J.-P.; Birot, A.; Tormos-Perez, M.; Vaur, S.; Feytout, A.; Jaegy, J.; Alonso Gil, D.; Vazquez, S.; Ekwall, K.

10.1101/748855 — molecular biology — Posted on 2019-08-28

455 The enteric nervous system of the human and mouse colon at a single-cell resolution

10.1101/746743 — genomics — Posted on 2019-08-28

456 SWR1 Chromatin Remodeling Complex Prevents Mitotic Slippage during Spindle Position Checkpoint Arrest

Caydasi, A. K.; Khmelinskii, A.; Darieva, Z.; Kurtulmus, B.; Knop, M.; Pereira, G.

10.1101/749440 — cell biology — Posted on 2019-08-28

457 System-wide analyses of the fission yeast poly(A)+ RNA interactome reveal insights into organisation and function of RNA-protein complexes

Kilchert, C.; Kecman, T.; Priest, E.; Hester, S.; Kus, K.; Castello, A.; Mohammed, S.; Vasiljeva, L.

10.1101/748194 — molecular biology — Posted on 2019-08-28

458 Optimization of AsCas12a for combinatorial genetic screens in human cells

Sanson, K. R.; DeWeirdt, P. C.; Sangree, A. K.; Hanna, R. E.; Hegde, M.; Teng, T.; Borys, S. M.; Strand, C.; Joung, J. K.; Kleinstiver, B.; Pan, X.; Huang, A.; Doench, J. G.

10.1101/747170 — genetics — Posted on 2019-08-28

459 Essentiality of CREBBP in EP300 truncated B-cell lymphoma revealed by genome-wide CRISPR-Cas9 screen

Nie, M.; Zhang, B.; Du, L.; Ren, W.; Joung, J.; Ye, X.; Fuenzalida, J. A.; Shi, X.; Liu, D.; Wu, K.; Zhang, F.; Hammarstrom, Q. P.

10.1101/746594 — cancer biology — Posted on 2019-08-28

460 Characterization of resistance to a potent D-peptide HIV entry inhibitor

Smith, A. R.; Weinstock, M. T.; Siglin, A. E.; Whitby, F. G.; Francis, J. N.; Hill, C. P.; Eckert, D. M.; Root, M. J.; Kay, M. S.

10.1101/748111 — microbiology — Posted on 2019-08-28

461 Combined mRNA and protein single cell analysis in a dynamic cellular system using SPARC

Reimegard, J.; Danielsson, M.; Tarbier, M.; Schuster, J.; Baskaran, S.; Panagiotou, S.; Dahl, N.; Friedlander, M. R.; Gallant, C. J.

10.1101/749473 — cell biology — Posted on 2019-08-28

462 Resurrection of ancestral effector caspases identifies novel networks for evolution of substrate specificity

Grinshpon, R. D.; Shrestha, S.; Titus-McQuillan, J.; Hamilton, P. T.; Swartz, P. D.; Clark, A. C.

10.1101/749143 — biochemistry — Posted on 2019-08-28

463 Type I fatty acid synthase (FAS) trapped in the octanoyl-bound state

Rittner, A.; Paithankar, K. S.; Himmler, A.; Grininger, M.

10.1101/747683 — biochemistry — Posted on 2019-08-28

464 Avian influenza virus (A/H3N8) with a putative mammalian-adaptive mutation found in a stranded grey seal pup (Halichoerus grypus) rescued on the Cornwall coast, UK

Venkatesh, D.; Bianco, C.; Nunez, A.; Collins, R.; Thorpe, D.; Reid, S. M.; Brookes, S. M.; Essen, S.; McGinn, N.; Seekings, J.; Cooper, J.; Brown, I. H.; Lewis, N. S.

10.1101/741173 — microbiology — Posted on 2019-08-28

465 VAMP8 contributes to TRIM6-mediated type-I interferon antiviral response during West Nile virus infection

Van Tol, S.; Atkins, C.; Bharaj, P.; Johnson, K. N.; Hage, A.; Freiberg, A. N.; Rajsbaum, R.

10.1101/749853 — immunology — Posted on 2019-08-28

466 Subcellular metabolic pathway kinetics are revealed by correcting for artifactual post harvest metabolism

Trefely, S.; Liu, J.; Huber, K.; Doan, M. T.; Jiang, H.; Singh, J.; von Krusenstiern, E.; Bostwick, A.; Xu, P.; Bogner-Strauss, J.; Wellen, K. E.; Snyder, N. W.

10.1101/749515 — biochemistry — Posted on 2019-08-28

467 BRD2 regulation of sigma-2 receptor expression upon cytosolic cholesterol deprivation

Shen, H.; Li, J.; Xie, X.; Yang, H.; Zhang, M.; Wang, B.; Kent, C.; Plutzky, J.; Guo, L.-W.

10.1101/748236 — biochemistry — Posted on 2019-08-28

468 Phylogeny, transposable element and sex chromosome evolution of the basal lineage of birds

Wang, Z.; Zhang, J.; Xu, X.; Witt, C. C.; Deng, Y.; Chen, G.; Meng, G.; Feng, S.; Szekely, T.; Zhang, G.; Zhou, Q.

10.1101/750109 — evolutionary biology — Posted on 2019-08-28

469 Systematic identification of factors bound to isolated metaphase ESC chromosomes reveals a role for chromatin repressors in compaction

Djeghloul, D.; Kohler, A.-C.; Patel, B.; Kramer, H.; Veland, N.; Whilding, C.; Dimond, A.; Elliott, J.; Feytout, A.; Bharat, T. A. M.; Tarafder, A. K.; Lowe, J.; Ng, B. L.; Guo, Y.; Brown, K.; Guy, J.; Merkenschlager, M.; Fisher, A. G.

10.1101/750067 — cell biology — Posted on 2019-08-28

470 High-throughput living-cell protein crosslinking analysis uncovers the physiological relevance of forming the \"inserted\" state of the ATP synthase ϵ-subunit

Liu, Y.; Yu, J.; Wang, M.; Zeng, Q.; Fu, X.; Chang, Z.

10.1101/749747 — biochemistry — Posted on 2019-08-28

471 Arginine valency in C9ORF72 dipolypeptides mediates promiscuous proteome binding that stalls ribosomes, disable actin cytoskeleton assembly and impairs arginine methylation of endogenous proteins

Radwan, M.; Ang, C.-S.; Ormsby, A. R.; Cox, D.; Daly, J. C.; Reid, G. E.; Hatters, D. M.

10.1101/749127 — biochemistry — Posted on 2019-08-28

472 The Five-Primer Challenge: An inquiry-based laboratory module for synthetic biology

Hsu, S.; Huenemann, J.; Kulkarni, V.; Amaro, R.; Moseley, R.; Mukhitov, N.; Tiwari, R.; Wang, S.; Smanski, M. J.

10.1101/745794 — scientific communication and education — Posted on 2019-08-28

473 Specific Regulation of TCP genes by miR319

Palatnik, J. F.; Weigel, D.

10.1101/747790 — plant biology — Posted on 2019-08-28

474 Abscisic acid is essential for rewiring of jasmonic acid-dependent defenses during herbivory

Vroegop-Vos, I. A.; Verhage, A.; Watt, L. G.; Vlaardingerbroek, I.; Schuurink, R. C.; Pieterse, C. M.; Van Wees, S. C.

10.1101/747345 — plant biology — Posted on 2019-08-28

475 Spatial Patterns for Discriminative Estimation (SPADE)

Llera Arenas, A.; Chauvin, R.; Mulders, P. C.; Naaijen, J.; Mennes, M.; Beckmann, C. F.

10.1101/746891 — neuroscience — Posted on 2019-08-28

476 Sensitive detection of highly fragmented cytomegalovirus nucleic acid in human cfDNA

Peddu, V.; Bradley, B.; Shree, S.; Colbert, B.; Xie, H.; Santo, T.; Huang, M.; Cheng, E.; Konnick, E.; Salipante, S.; Jerome, K.; Lockwood, C.; Greninger, A. L.

10.1101/748434 — microbiology — Posted on 2019-08-28

477 Mosaic heterochrony in neural progenitors sustains accelerated brain growth and neurogenesis in the juvenile killifish N. furzeri

Coolen, M.; Labusch, M.; Mannioui, A.; Hoppe, B.; Baumgart, M.; Bally-Cuif, L.

10.1101/747477 — developmental biology — Posted on 2019-08-28

478 Structure of LetB reveals a tunnel for lipid transport across the bacterial envelope

Isom, G. L.; Coudray, N.; MacRae, M. R.; McManus, C. T.; Ekiert, D. C.; Bhabha, G.

10.1101/748145 — biochemistry — Posted on 2019-08-28

479 Droplet-digital Cas13a assay enables direct single-molecule microRNA quantification

Tian, T.; Shu, B.; Liu, L.; Zhou, X.

10.1101/748939 — biochemistry — Posted on 2019-08-28

480 Genetic screens reveal a central role for heme biosynthesis in artemisinin susceptibility

Harding, C.; Sidik, S. M.; Petrova, B.; Gnädig, N. F.; Okombo, J.; Ward, K. E.; Markus, B. M.; Fidock, D. A.; Lourido, S.

10.1101/746974 — microbiology — Posted on 2019-08-28

481 The enteric nervous system of the human and mouse colon at a single-cell resolution

10.1101/746743 — genomics — Posted on 2019-08-28

482 Spatiotemporal Feature Selection Improves Prediction Accuracy of Multi-Voxel Pattern Classification

Choupan, J. C.; Gal, Y.; Douglas, P. K.; Cohen, M. S.; Reutens, D. C.; Yang, Z.

10.1101/746735 — neuroscience — Posted on 2019-08-28

483 Developmental gene expression differences between humans and mammalian models

Cardoso-Moreira, M.; Velten, B.; Mort, M.; Cooper, D. N.; Huber, W.; Kaessmann, H.

10.1101/747782 — genomics — Posted on 2019-08-28

484 Disome-seq reveals sequence-mediated coupling of translational pauses and protein structures

Zhao, T.; Chen, Y.; Wang, J.; Chen, S.; Qian, W.

10.1101/746875 — genomics — Posted on 2019-08-28

485 Relative growth of invasive and indigenous tilapiine cichlid fishes in Tanzania

Bradbeer, S. J.; Ngatunga, B. P.; Turner, G. F.; Genner, M. J.

10.1101/743740 — ecology — Posted on 2019-08-28

486 Demonstrating and disrupting well-learned habits

Ceceli, A. O.; Myers, C. E.; Tricomi, E.

10.1101/745356 — neuroscience — Posted on 2019-08-28

487 Dynamic changes in natural killer cell subset frequencies in the absence of cytomegalovirus infection

Gyurova, I.; Schlums, H.; Sucharew, H.; Ambroggio, L.; Win, H.; Bryceson, Y. T.; Bernstein, D.; Waggoner, S. N.

10.1101/745190 — immunology — Posted on 2019-08-28

488 Proliferative behavior of hematopoietic stem cells revisited: No evidence for mitotic memory

Morcos, M. N. F.; Zerjatke, T.; Glauche, I.; Munz, C. M.; Ge, Y.; Petzold, A.; Reinhardt, S.; Dahl, A.; Anstee, N.; Bogeska, R.; Milsom, M.; Saewen, P.; Wan, H.; Bryder, D.; Roers, A.; Gerbaulet, A.

10.1101/745729 — cell biology — Posted on 2019-08-28

489 Magnetic Resonance measurements of cellular and sub-cellular membrane structures in live and fixed neural tissue

Williamson, N. H.; Ravin, R.; Benjamini, D.; Merkle, H.; Falgairolle, M.; O'Donovan, M. J.; Blivis, D.; Ide, D.; Cai, T. X.; Gorash, N. S.; Bai, R.; Basser, P.

10.1101/694661 — biophysics — Posted on 2019-08-28

490 Whole-genome sequencing of five proteobacteria isolated from Lechuguilla Cave, New Mexico, USA: Insights into taxonomy and quorum-sensing

Gan, H. M.; Wengert, P.; Barton, H.; Hudson, A. O.; Savka, M. A.

10.1101/742460 — genomics — Posted on 2019-08-28

491 Charge and hydrophobicity are key features in sequence-trained machine learning models for predicting the biophysical properties of clinical-stage antibodies

Hebditch, M.; Warwicker, J.

10.1101/625830 — bioinformatics — Posted on 2019-08-28

492 Easy MPE: Extraction of quality microplot images for UAV-based high-throughput field phenotyping

Tresch, L.; Mu, Y.; Itoh, A.; Kaga, A.; Taguchi, K.; Hirafuji, M.; Ninomiya, S.; GUO, W.

10.1101/745752 — bioengineering — Posted on 2019-08-28

493 Acute and Chronic Molecular Signatures and Associated Symptoms of Blast Exposure in Military Breachers

Wang, Z.; Wilson, C.; Mendelev, N.; Ge, Y.; Galfalvy, H.; Elder, G.; Ahlers, S.; Yarnell, A. M.; LoPreseti, M. L.; Kamimori, G.; Carr, W.; Haghighi, F.

10.1101/738054 — genomics — Posted on 2019-08-28

494 Subtractive Genomic Analysis for Identification of Novel Drug Targets and Vaccine Candidates against Bartonella bacilliformis subsp. Ver097

Khan, M. T.; Mahmud, A.; Iqbal, A.; Hasan, M.

10.1101/731570 — bioinformatics — Posted on 2019-08-28

495 Increased serological response against human herpesvirus 6A is associated with risk for multiple sclerosis

Engdahl, E.; Gustafsson, R.; Huang, J.; Bistrom, M.; Lima Bomfim, I.; Stridh, P. M.; Khademi, M.; Butt, J.; Brenner, N.; Michel, A.; Jons, D.; Hortlund, M.; Alonso-Magdalena, L.; Hedstrom, A. K.; Flamand, L.; Ihira, M.; Yoshikawa, T.; Andersen, O.; Hillert, J.; Alfredsson, L.; Waterboer, T.; Sundstrom, P.; Olsson, T.; Kockum, I.; Fogdell-Hahn, A.

10.1101/737932 — immunology — Posted on 2019-08-28

496 The effects of direct brain stimulation in humans depend on frequency, amplitude, and white-matter proximity.

Mohan, U. R.; Watrous, A. J.; Miller, J. F.; Lega, B. C.; Sperling, M. R.; Worrell, G. A.; Gross, R. E.; Zaghloul, K. A.; Jobst, B. C.; Davis, K. A.; Sheth, S. A.; Stein, J. M.; Das, S. R.; Gorniak, R.; Wanda, P. A.; Kahana, M. J.; Jacobs, J.

10.1101/746834 — neuroscience — Posted on 2019-08-28

497 Molecular insights from conformational ensembles using Machine Learning

Fleetwood, O.; Kasimova, M. A.; Westerlund, A.; Delemotte, L.

10.1101/695254 — biophysics — Posted on 2019-08-28

498 Plasma non-esterified fatty acids contribute to increased coagulability in type-2 diabetes through altered plasma zinc speciation

Sobczak, A. I. S.; Katundu, K. G. H.; Phoenix, F. A.; Khazaipoul, S.; Yu, R.; Lampiao, F.; Stefanowicz, F.; Blindauer, C. A.; Pitt, S. J.; Smith, T. K.; Ajjan, R. A.; Stewart, A. J.

10.1101/744482 — biochemistry — Posted on 2019-08-28

499 Age-dependent loss of mitochondrial DNA integrity in mammalian muscle

Wanrooij, P. H.; Tran, P.; Thompson, L. J.; Sharma, S.; Kreisel, K.; Navarrete, C.; Feldberg, A.-L.; Watt, D.; Nilsson, A. K.; Engqvist, M. K.; Clausen, A. R.; Chabes, A.

10.1101/746719 — molecular biology — Posted on 2019-08-28

500 The crustacean Armadillidium vulgare, a new promising model for the study of cellular senescence

Depeux, C.; Samba-Louaka, A.; Becking, T.; Braquart-Varnier, C.; Moreau, J.; Lemaitre, J.-F.; Laverre, T.; Paulhac, H.; Dechaume-Montcharmont, F.-X.; Gaillard, J.-M.; Beltran-Bech, S.

10.1101/583914 — evolutionary biology — Posted on 2019-08-28

501 Human ZKSCAN3 and Drosophila M1BP are functionally homologous transcription factors in autophagy regulation

Barthez, M.; Poplineau, M.; El-Refaey, M.; Caruso, N.; Graba, Y.; Saurin, A. J.

10.1101/747824 — cell biology — Posted on 2019-08-28

502 Estrogen deprivation triggers an immunosuppressive phenotype in breast cancer cells

Huhn, D.; Marti-Rodrigo, P.; Mouron, S.; Hansel, C.; Tschapalda, K.; Porebski, B.; Haggblad, M.; Lidemalm, L.; Quintela-Fandino, M. A.; Carreras-Puigvert, J.; Fernandez-Capetillo, O.

10.1101/715136 — cancer biology — Posted on 2019-08-28

503 Gene-set enrichment with regularized regression

Fang, T.; Davydov, I.; Marbach, D.; Zhang, J. D.

10.1101/659920 — bioinformatics — Posted on 2019-08-28

504 NuSeT: A Deep Learning Tool for Reliably Separating and Analyzing Crowded Cells

Yang, L.; Ghosh, R. P.; Franklin, J. M.; You, C.; Liphardt, J.

10.1101/749754 — bioinformatics — Posted on 2019-08-28

505 Mitigating memory effects during undulatory locomotion on hysteretic materials.

Schiebel, P. E.; Astley, H. C.; Rieser, J. M.; Agarwal, S.; Hubicki, C.; Hubbard, A. M.; Cruz, K.; Mendelson, J. R.; Kamrin, K.; Goldman, D. I.

10.1101/748186 — biophysics — Posted on 2019-08-28

506 Protein lysine methylation is involved in modulating the response of sensitive and tolerant Arabidopsis species to cadmium stress

Serre, N. B.; Sarthou, M.; Gigarel, O.; Figuet, S.; Corso, M.; Choulet, J.; Rofidal, V.; Alban, C.; Santoni, V.; Bourguignon, J.; Verbruggen, N.; Ravanel, S.

10.1101/652651 — plant biology — Posted on 2019-08-28

507 The Gut Microbiota composition of Feral and Tamworth Pigs determined using High-Throughput Culturomics and Metagenomics Reveals Compositional Variations When Compared to the Commercial Breeds

Fenske, G. J.; Ghimire, S.; Antony, L.; Christopher-Hennings, J.; Scaria, J.

10.1101/738278 — microbiology — Posted on 2019-08-28

508 Close homologue of L1 sensitizes lung cancer cells to cisplatin and paclitaxel via inhibition Akt pathway

Cai, X.; Hu, B.; Liu, S.; Liu, M.; Huang, Y.; Lei, P.; Zhang, Z.; He, Z.; Zhang, L.; Huang, R.

10.1101/747238 — cancer biology — Posted on 2019-08-28

509 Cryo-ET analysis of budding yeast synaptonemal complexes in situ

Ma, O. X.; Cai, S.; Shi, J.; Gan, L.

10.1101/746982 — cell biology — Posted on 2019-08-28

510 Integrative framework of cross-module deep biomarker for the prognosis of clear cell renal cell carcinoma: A retrospective TCGA project

Ning, Z.; Pan, W.; Xiao, Q.; Chen, Y.; Zhang, X.; Luo, J.; Wang, J.; Zhang, Y.

10.1101/746818 — bioinformatics — Posted on 2019-08-28

511 Olfactory ensheathing cells from the nasal mucosa and olfactory bulb have distinct membrane properties

Smith, K. E.; Whitcroft, K.; Law, S.; Andrews, P.; Choi, D.; Jagger, D. J.

10.1101/640839 — physiology — Posted on 2019-08-28

512 Phosphatidylcholine biosynthesis in Mitis group streptococci via a host metabolite scavenging pathway

Joyce, L.; Guan, Z.; Palmer, K.

10.1101/664672 — microbiology — Posted on 2019-08-28

513 Insight into the resistome and quorum sensing system of a divergent Acinetobacter pittii isolate from an untouched site of the Lechuguilla Cave

Gan, H. M.; Wengert, P.; Penix, T.; Barton, H.; Hudson, A. O.; Savka, M.

10.1101/745182 — microbiology — Posted on 2019-08-28

514 Changes in brain microRNAs are associated with social evolution in bees

Kapheim, K. M.; Jones, B. M.; Sovik, E.; Stolle, E.; Waterhouse, R. M.; Bloch, G.; Ben-Shahar, Y.

10.1101/730317 — genomics — Posted on 2019-08-28

515 RUNX1-ETO induction rapidly alters chromatin landscape and growth of a specific sub-population of hESC-derived myeloid precursor cells by interfering with RUNX1 regulation

Nafria, M.; Keane, P.; Ng, E.; Stanley, E. G.; Elefanty, A. G.; Bonifer, C.

10.1101/748921 — cancer biology — Posted on 2019-08-28

516 Introns Control Intrinsic Noise

Sands, B.; Yun, S. R.; Mendenhall, A. R.

10.1101/746263 — systems biology — Posted on 2019-08-28

517 Dopamine waves as a mechanism for spatiotemporal credit assignment

Hamid, A. A.; Frank, M. J.; Moore, C. I.

10.1101/729640 — neuroscience — Posted on 2019-08-28

518 Depression of substantia nigra dopamine transmission is driven by retrograde neurotensin release and is enhanced by methamphetamine self-administration

Tschumi, C. W.; Sharma, R.; Lynch, W. B.; Sharpe, A. L.; Beckstead, M. J.

10.1101/717843 — neuroscience — Posted on 2019-08-28

519 Environmental pH impacts division assembly and cell size in Escherichia coli

Mueller, E. A.; Westfall, C. S.; Levin, P. A.

10.1101/747808 — microbiology — Posted on 2019-08-28

520 Rapid light-dependent degradation of fluorescent dyes in formulated serum-free media

Morawski, P. A.; Motley, S.; Campbell, D.

10.1101/578856 — immunology — Posted on 2019-08-28

521 Telomere Dysfunction Drives Chronic Lung Allograft Dysfunction Pathology

Naikawadi, R. P.; Green, G.; Jones, K. D.; Achtar-Zadeh, N.; Mieleszko, J. E.; Kukreja, J.; Greenland, J.; Wolters, P. J.

10.1101/746768 — cell biology — Posted on 2019-08-28

522 ReorientExpress: reference-free orientation of nanopore cDNA reads with deep learning

Ruiz-Reche, A.; Srivastava, A.; Indi, J. A.; de la Rubia, I.; Eyras, E.

10.1101/553321 — bioinformatics — Posted on 2019-08-28

523 Evolved differences in cis and trans regulation between the maternal and zygotic mRNA complements in the Drosophila embryo

Cartwright, E. L.; Lott, S. E.

10.1101/737536 — evolutionary biology — Posted on 2019-08-28

524 Atrous Convolution with Transfer Learning for Skin Lesions Classification

Ratul, M. A. R.; Mozaffari, M. H.; Parimbelli, E.; Lee, W.

10.1101/746388 — cancer biology — Posted on 2019-08-28

525 PlotTwist - a web app for plotting and annotating time-series data

Goedhart, J.

10.1101/745612 — scientific communication and education — Posted on 2019-08-28

526 Biased Signaling: Distinct Ligand-directed Plasma Membrane Signalsomes Using a Common RGS/G Protein Core

Ross-Elliott, T.; Watkins, J.; Shan, X.; Lou, F.; Dreyer, B.; Tunc-Ozdemir, M.; Jia, H.; Yang, J.; Wu, L.; Trusov, Y.; Krysan, P.; Jones, A.

10.1101/666578 — plant biology — Posted on 2019-08-28

527 Leptin resistance establishment in the ovary of diet-induced obese mice and its relationship with cumulus cells transcriptome

Wolodko, K.; Walewska, E.; Castillo-Fernandez, J.; Kelsey, G. D.; Galvao, A.

10.1101/729657 — physiology — Posted on 2019-08-28

528 Loss of MLKL Decreases Necrotic Core but Increases Macrophage Lipid Accumulation In Atherosclerosis

Rasheed, A.; Robichaud, S.; Nguyen, M.-A.; Geoffrion, M.; Cottee, M. L.; Dennison, T.; Pietrangelo, A.; Lee, R.; Ouimet, M.; Rayner, K.

10.1101/746644 — pathology — Posted on 2019-08-28

529 Cellular reprogramming for successful CNS axon regeneration is driven by a temporally changing cast of transcription factors

Dhara, S. P.; Rau, A.; Flister, M. J.; Recka, N. M.; Laiosa, M. D.; Auer, P. L.; Udvadia, A. J.

10.1101/638734 — neuroscience — Posted on 2019-08-28

530 Prefrontal Cortex Regulates Chronic Stress-Induced Cardiovascular Susceptibility

Schaeuble, D.; Packard, A. E. B.; McKlveen, J. M.; Morano, R. L.; Fourman, S.; Smith, B. L.; Scheimann, J. R.; Packard, B. A.; Wilson, S. P.; James, J.; Hui, D. Y.; Ulrich-Lai, Y. M.; Herman, J. P.; Myers, B.

10.1101/675835 — neuroscience — Posted on 2019-08-28

531 Auditory attention alterations in migraine: a behavioral and MEG/EEG study

Masson, R.; Leveque, Y.; Demarquay, G.; ElShafei, H. A.; Fornoni, L.; Lecaignard, F.; Morlet, D.; Bidet-Caulet, A.; Caclin, A.

10.1101/661413 — neuroscience — Posted on 2019-08-28

532 Development of a functional genetic tool for Anopheles gambiae oenocyte characterisation: application to cuticular hydrocarbon synthesis

Lynd, A.; Balabanidou, V.; Grosman, R.; Maas, J. A.; Lian, L.-Y.; Vontas, J.; Lycett, G. J.

10.1101/742619 — molecular biology — Posted on 2019-08-28

533 N-terminal autoprocessing and acetylation of MARTX Makes-Caterpillars Floppy-like effector is stimulated by ADP-Ribosylation Factor 1 in advance of Golgi fragmentation

Herrera, A.; Muroski, J.; Sengupta, R.; Nguyen, H. H.; Agarwal, S.; Ogorzalek Loo, R. R.; Mattoo, S.; Loo, J. A.; Satchell, K. J. F.

10.1101/736421 — microbiology — Posted on 2019-08-28

534 Negative plant-microbiome feedback limits productivity in aquaponics

Day, J. A.; Otwell, A. E.; Diener, C.; Tams, K. E.; Bebout, B. M.; Detweiler, A. M.; Lee, M. D.; Scott, M. T.; Ta, W.; Ha, M.; Carreon, S. A.; Tong, K.; Ali, A. A.; Gibbons, S. M.; Baliga, N. S.

10.1101/709162 — microbiology — Posted on 2019-08-28

535 Genome-scale profiling reveals higher proportions of phylogenetic signal in non-coding data

Literman, R.; Schwartz, R. S.

10.1101/712646 — bioinformatics — Posted on 2019-08-28

536 Compositional heterogeneity confers selective advantage to protocellular membranes during the origins of cellular life

Sarkar, S.; Dagar, S.; Verma, A.; Rajamani, S.

10.1101/678847 — biochemistry — Posted on 2019-08-28

537 RNA polymerase mutations cause cephalosporin resistance in clinical Neisseria gonorrhoeae isolates

Palace, S. G.; Wang, Y.; Rubin, D. H. F.; Welsh, M.; Mortimer, T. D.; Cole, K.; Eyre, D. W.; Walker, S. G.; Grad, Y.

10.1101/626457 — microbiology — Posted on 2019-08-28

538 The Drosophila melanogaster PIF1 helicase promotes survival during replication stress and processive DNA synthesis during double-strand gap repair

Kocak, E.; Dykstra, S.; Nemeth, A.; Coughlin, C. G.; Rodgers, K.; McVey, M.

10.1101/554550 — genetics — Posted on 2019-08-28

539 30 years of satellite data show imperiled species are most vulnerable to habitat loss on private lands

Eichenwald, A. J.; Evans, M. J.; Malcom, J. W.

10.1101/556241 — ecology — Posted on 2019-08-28

540 S3norm: simultaneous normalization of sequencing depth and signal-to-noise ratio in epigenomic data

Xiang, G.; Keller, C.; Giardine, B.; An, L.; Li, Q.; Zhang, Y.; Hardison, R.

10.1101/506634 — bioinformatics — Posted on 2019-08-28

541 Legacy Data Confounds Genomics Studies

Anderson-Trocme, L.; Farouni, R.; Bourgey, M.; Kamatani, Y.; Higasa, K.; Seo, J.-S.; Kim, C.; Matsuda, F.; Gravel, S.

10.1101/624908 — bioinformatics — Posted on 2019-08-28

542 Antagonistic coevolution between multiple quantitative traits: Matching dynamics can arise from difference interactions

Yamamichi, M.; Lyberger, K.; Patel, S.

10.1101/509885 — evolutionary biology — Posted on 2019-08-28

543 Hyperactive MEK1 signaling in cortical GABAergic interneurons causes embryonic parvalbumin-neuron death and deficits in behavioral inhibition

Holter, M. C.; Hewitt, L. T.; Nishimura, K. J.; Bjorklund, G. R.; Shah, S.; Fry, N. R.; Rees, K. P.; Gupta, T. A.; Daniels, C. W.; Li, G.; Marsh, S.; Treiman, D. M.; Olive, M. F.; Anderson, T. R.; Sanabria, F.; Snider, W. D.; Newbern, J. M.

10.1101/748087 — neuroscience — Posted on 2019-08-27

544 Galanin inhibits visceral afferent responses to noxious mechanical and inflammatory stimuli

Taylor, T. S.; Konda, P.; John, S. S.; Bulmer, D. C.; Hockley, J. R.; Smith, E. S. J.

10.1101/746586 — neuroscience — Posted on 2019-08-27

545 Revaluation of magnetic properties of Magneto, MagR and αGFP-TRPV1/GFP-ferritin

Wang, G.; Zhang, P.; Mendu, S. K.; Wang, Y.; Zhang, Y.; Kang, X.; Desai, B. N.; Zhu, J. J.

10.1101/737254 — neuroscience — Posted on 2019-08-27

546 Visual looming and receding networks in awake marmosets investigated with fMRI

Clery, J. C.; Schaeffer, D. J.; Hori, Y.; Gilbert, K. M.; Hayrynen, L. K.; Gati, J. S.; Menon, R. S.; Everling, S.

10.1101/749309 — neuroscience — Posted on 2019-08-27

547 Single cell transcriptomic analysis of the adult mouse pituitary reveals a novel multi-hormone cell cluster and physiologic demand-induced lineage plasticity

Ho, Y.; Hu, P.; Peel, M. T.; Chen, S.; Camara, P. G.; Epstein, D. J.; Wu, H.; Stephen, L. A.

10.1101/475558 — genomics — Posted on 2019-08-27

548 Quantitative mathematical modeling of clinical brain metastasis dynamics in non-small cell lung cancer

Bilous, M.; Serdjebi, C.; Boyer, A.; Tomasini, P.; Pouypoudat, C.; Barbolosi, D.; Barlesi, F.; Chomy, F.; Benzekry, S.

10.1101/448282 — cancer biology — Posted on 2019-08-27

549 DataRemix: a universal data transformation for optimal inference from gene expression datasets

Mao, W.; Rahimikollu, J.; Hausler, R.; Ng, B.; Mostafavi, S.; Chikina, M.

10.1101/357467 — genomics — Posted on 2019-08-27

550 Macroevolutionary bursts and constraints generate a rainbow in a clade of tropical birds

Merwin, J. T.; Seeholzer, G. F.; Smith, B. T.

10.1101/489419 — evolutionary biology — Posted on 2019-08-27

551 Interactome comparison of human embryonic stem cell lines with the inner cell mass and trophectoderm

Stevens, A.; Smith, H.; Garner, T.; Minogue, B.; Sneddon, S.; Shaw, L.; Keramari, M.; Oldershaw, R.; Bates, N.; Brison, D.; Kimber, S.

10.1101/411439 — developmental biology — Posted on 2019-08-27

552 Deep learning pipeline for cell edge segmentation of time-lapse live cell images

Wang, C.; Zhang, X.; Choi, H. J.; Lin, B.; Yu, Y.; Whittle, C.; Ryan, M.; Chen, Y.; Lee, K.

10.1101/191858 — bioinformatics — Posted on 2019-08-27

553 Dynamic turnover of centromeres drives karyotype evolution in Drosophila

Bracewell, R.; Chatla, K.; Nalley, M. J.; Bachtrog, D.

10.1101/733527 — evolutionary biology — Posted on 2019-08-27

554 Deepprune: Learning efficient and interpretable convolutional networks through weight pruning for predicting DNA-protein binding

Luo, X.; Chi, W.; Deng, M.

10.1101/729566 — bioinformatics — Posted on 2019-08-27

555 Pathological Tau Induces Neurodegeneration by Sequestering and Inhibiting LSD1

Engstrom, A. K.; Walker, A. C.; Moudgal, R. A.; Myrick, D. A.; Kyle, S. M.; Katz, D. J.

10.1101/745133 — neuroscience — Posted on 2019-08-27

556 Oncogenic herpesvirus engages the endothelial transcription factors SOX18 and PROX1 to increase viral genome copies and virus production

Gramolelli, S.; Elbasani, E.; Nurminen, V.; Tuohinto, K.; Günther, T.; Kallinen, R. E.; Kaijalainen, S. P.; Diaz, R.; Grundhoff, A.; Haglund, C.; Ziegelbauer, J. M.; Bower, M.; Francois, M.; Ojala, P. M.

10.1101/742932 — microbiology — Posted on 2019-08-27

557 A molecular cell atlas of the human lung from single cell RNA sequencing

Travaglini, K. J.; Nabhan, A. N.; Penland, L.; Sinha, R.; Gillich, A.; Sit, R. V.; Chang, S.; Conley, S. D.; Mori, Y.; Seita, J.; Berry, G. J.; Shrager, J. B.; Metzger, R. J.; Kuo, C. S.; Neff, N.; Weissman, I. L.; Quake, S. R.; Krasnow, M. A.

10.1101/742320 — genomics — Posted on 2019-08-27

558 Wheat inositol pyrophosphate kinase (TaVIH2-3B) interacts with Fasciclin-like arabinogalactan (FLA6) protein and alters the plant cell-wall composition

Kaur, M.; Shukla, A.; Kanwar, S.; Shukla, V.; Kaur, G.; Sharma, S.; Kumar, A.; Aggarwal, S.; Bhati, K. K.; Pandey, P.; Mazumder, K.; Rishi, V.; Pandey, A. K.

10.1101/743294 — plant biology — Posted on 2019-08-27

559 Mitochondrial RNA granules are fluid condensates, positioned by membrane dynamics

Rey, T.; Zaganelli, S.; Cuillery, E.; Martinou, J.-C.; Manley, S.

10.1101/747055 — biophysics — Posted on 2019-08-27

560 Interpretation of Phase Boundary Fluctuation Spectra in Biological Membranes with Nanoscale Organization

Iyer, S. S.; Negi, A.; Srivastava, A.

10.1101/746800 — biophysics — Posted on 2019-08-27

561 Structure of the native supercoiled flagellar hook as a universal joint

Kato, T.; Makino, F.; Miyata, T.; Horvath, P.; Namba, K.

10.1101/748384 — biophysics — Posted on 2019-08-27

562 A central role of glutamine in Chlamydia infection

Rajeeve, K.; Vollmuth, N.; Janaki-Raman, S.; Wulff, T.; Schmalhofer, M.; Schmitz, W.; Baluapuri, A.; Huber, C.; Fink, J.; Dejure, F. R.; Wolf, E.; Eisenreich, W.; Schulze, A.; Seibel, J.; Rudel, T.

10.1101/742817 — microbiology — Posted on 2019-08-27

563 Arginine-GlcNAcylation of death domain and NleB/SseK proteins is crucial for bacteria pathogenesis by regulating host cell death

Pan, X.; Xue, J.; Du, L.; Zhuang, X.; Cai, X.; Li, S.

10.1101/746883 — microbiology — Posted on 2019-08-27

564 Direct microRNA sequencing using Nanopore Induced Phase-Shift Sequencing (NIPSS)

Zhang, J.; Yan, S.; Guo, W.; Wang, Y.; Wang, Y.; Zhang, P.; Chen, H.-Y.; Huang, S.

10.1101/747113 — biophysics — Posted on 2019-08-27

565 A time-resolved imaging-based CRISPRi screening method

Camsund, D.; Lawson, M. J.; Larsson, J.; Jones, D. L.; Zirkin, S.; Fange, D.; Elf, J.

10.1101/747758 — biophysics — Posted on 2019-08-27

566 Human ZKSCAN3 and Drosophila M1BP are functionally homologous transcription factors in autophagy regulation

Barthez, M.; Poplineau, M.; El-Refaey, M.; Caruso, N.; Graba, Y.; Saurin, A. J.

10.1101/747824 — cell biology — Posted on 2019-08-27

567 Targetable Tetrazine-Based Dynamic Nuclear Polarization Agents for Biological Systems

Lim, B. J.; Ackermann, B. E.; Debelouchina, G. T.

10.1101/740530 — biophysics — Posted on 2019-08-27

568 RasGRP1 (CalDAG-GEF-II) Mediates L-DOPA-induced Dyskinesia in a Mouse Model of Parkinson Disease

Ishragi, M.; Ramirez Jarquin, U. N.; Shahani, N.; Swarnkar, S.; Galli, N.; Rivera, O.; Tsaprailis, G.; Scharager-Tapia, C.; Crynen, G.; Usiello, A.; Subramaniam, S.

10.1101/739631 — neuroscience — Posted on 2019-08-27

569 RNA-Binding Proteins MSI-1 (Musashi) and EXC-7 (HuR) Regulate Serotonin-Mediated Behaviors in C. elegans

Yang, Z.; Lan, L.; Wu, X.; Xu, L.; Buechner, M.

10.1101/748509 — cell biology — Posted on 2019-08-27

570 Conjunctive changes in two distinct ion channels induce activity-dependent intrinsic plasticity in rat dentate gyrus granule cells

Mishra, P.; Narayanan, R.

10.1101/747550 — neuroscience — Posted on 2019-08-27

571 METTL2 forms a complex with the DALRD3 anticodon-domain binding protein to catalyze formation of 3-methylcytosine in specific arginine tRNA isoacceptors

Lentini, J. M.; Fu, D.

10.1101/745240 — molecular biology — Posted on 2019-08-27

572 Stromal Hedgehog pathway activation by IHH suppresses lung adenocarcinoma growth and metastasis by limiting reactive oxygen species

Kasiri, S.; Chen, B.; Wilson, A. N.; Reczek, A.; Mazambani, S.; Gadhvi, J.; Noel, E.; Marriam, U.; Mino, B.; Lu, W.; Girard, L.; Solis, L.; Luby-Phelps, K.; Bishop, J.; Kim, J.-W.; Kim, J.

10.1101/747915 — cancer biology — Posted on 2019-08-27

573 Cell-based Simulations of Biased Epithelial Lung Growth

Iber, D.; Kokic, M.; Stopka, A.

10.1101/747188 — biophysics — Posted on 2019-08-27

574 Structured connectivity exploits NMDA non-linearitites to enable flexible encoding of multiple memoranda in a PFC circuit model

Stefanou Stamatiadis, S.; Papoutsi, A.; Poirazi, P.

10.1101/733519 — neuroscience — Posted on 2019-08-27

575 Structured connectivity exploits NMDA non-linearitites to enable flexible encoding of multiple memoranda in a PFC circuit model

Stefanou Stamatiadis, S.; Papoutsi, A.; Poirazi, P.

10.1101/733519 — neuroscience — Posted on 2019-08-27

576 Capturing medical practice with indication embeddings

Melamed, R. D.

10.1101/737049 — bioinformatics — Posted on 2019-08-27

577 Capturing medical practice with indication embeddings

Melamed, R. D.

10.1101/737049 — bioinformatics — Posted on 2019-08-27

578 Restriction Enzyme Based Enriched L1Hs sequencing (REBELseq)

Reiner, B. C.; Doyle, G. A.; Weller, A. E.; Levinson, R. N.; Namoglu, E.; Pigeon, A.; Arauco-Shapiro, G.; Davila Perea, E.; Weickert, C. S.; Turecki, G.; Mash, D. C.; Crist, R. C.; Berrettini, W. H.

10.1101/710095 — genetics — Posted on 2019-08-27

579 ReorientExpress: reference-free orientation of nanopore cDNA reads with deep learning

Ruiz-Reche, A.; Srivastava, A.; Indi, J. A.; de la Rubia, I.; Eyras, E.

10.1101/553321 — bioinformatics — Posted on 2019-08-27

580 Supporting evidence for DNA shearing as a mechanism for origin unwinding in eukaryotes

Langston, L. D.; Georgescu, R.; O'Donnell, M. E.

10.1101/739557 — biochemistry — Posted on 2019-08-27

581 A carbonic anhydrase pseudogene sensitizes select Brucella lineages to low CO2 tension

Varesio, L. M.; Willet, J. W.; Fiebig, A.; Crosson, S.

10.1101/721597 — microbiology — Posted on 2019-08-27

582 IgEvolution: clonal analysis of antibody repertoires

Safonova, Y.; Pevzner, P. A.

10.1101/725424 — immunology — Posted on 2019-08-27

583 Atrous Convolution with transfer learning for Skin Lesions Classification

Ratul, M. A. R.; Mozaffari, M. H.; Parimbelli, E.; Lee, W.

10.1101/746388 — cancer biology — Posted on 2019-08-27

584 Frequency specific network effective connectivity: ERP analysis of recognition memory process by directed connectivity estimators

Darvishi-Bayazi, M.-J.; Motie Naseabadi, A.; Curran, T.

10.1101/739573 — bioengineering — Posted on 2019-08-27

585 Genomic Analyses of SLAMF7 CAR-T Cells Manufactured by Sleeping Beauty Transposon Gene Transfer for Immunotherapy of Multiple Myeloma

Miskey, C.; Amberger, M.; Reiser, M.; Prommersberger, S.; Beckmann, J.; Machwirth, M.; Einsele, H.; Hudecek, M.; Bonig, H.; Ivics, Z.

10.1101/675009 — bioengineering — Posted on 2019-08-27

586 Conjugative delivery of CRISPR-Cas9 for the selective depletion of antibiotic-resistant enterococci

Rodrigues, M.; McBride, S. W.; Hullahalli, K.; Palmer, K. L.; Duerkop, B. A.

10.1101/678573 — microbiology — Posted on 2019-08-27

587 Enhanced targeted resequencing by optimizing the combination of enrichment technology and DNA fragment length

Iadarola, B.; Xumerle, L.; Lavezzari, D.; Paterno, M.; Marcolungo, L.; Beltrami, C.; Fortunati, E.; Mei, D.; Vetro, A.; Guerrini, R.; Parrini, E.; Rossato, M.; Delledonne, M.

10.1101/712125 — genomics — Posted on 2019-08-27

588 Testing and controlling for horizontal pleiotropy with the probabilistic Mendelian randomization in transcriptome-wide association studies

Yuan, Z.; Zhu, H.; Zeng, P.; Yang, S.; Sun, S.; Yang, C.; Liu, J.; Zhou, X.

10.1101/691014 — genetics — Posted on 2019-08-27

589 Polygenic adaptation to an environmental shift: temporal dynamics of variation under Gaussian stabilizing selection and additive effects on a single trait

Thornton, K. R.

10.1101/505750 — evolutionary biology — Posted on 2019-08-27

590 Cancer causes metabolic perturbations associated with reduced insulin-stimulated glucose uptake in peripheral tissues and impaired muscle microvascular perfusion

Han, X.; Raun, S.; Carlsson, M.; Sjoberg, K. A.; Henriquez-Olguin, C.; Ali, M.; Lundsgaard, A.; Fritzen, A. M.; Moller, L. L. V.; Li, Z.; Li, J.; Jensen, T. E.; Kiens, B.; Sylow, L.

10.1101/734764 — cancer biology — Posted on 2019-08-27

591 Electrochemical Roughening and Carbon Nanotube Coating of Tetrodes for Chronic Single-Unit Recording

Xia, Z.; Arias-Gil, G.; Deckert, M.; Vollmer, M.; Curran, A.; Herrera-Molina, R.; Brosch, M.; Krug, K.; Schmidt, B.; Ohl, F. W.; Lippert, M. T.; Takagaki, K.

10.1101/738245 — bioengineering — Posted on 2019-08-27

592 Lactation curve model with explicit representation of perturbations as a phenotyping tool for dairy livestock precision farming

Ben Abdelkrim, A.; Puillet, L.; Gomes, P.; Martin, O.

10.1101/661249 — zoology — Posted on 2019-08-27

593 During hippocampal inactivation, grid cells maintain their synchrony, even when the grid pattern is lost

Almog, N.; Tocker, G.; Bonnevie, T.; Moser, M.-B.; Moser, E. I.; Derdikman, D.

10.1101/592006 — neuroscience — Posted on 2019-08-27

594 Unraveling the relation between EEG-correlates of attentional orienting and sound localization performance: a diffusion model approach

Klatt, L.-I.; Schneider, D.; Schubert, A.-L.; Hanenberg, C.; Lewald, J.; Wascher, E.; Getzmann, S.

10.1101/616573 — neuroscience — Posted on 2019-08-27

595 ER reorganization and intracellular retention of CD58 are functionally independent properties of the human cytomegalovirus ER resident glycoprotein UL148

Nguyen, C. C.; Domma, A. J.; Zhang, H.; Kamil, J. P.

10.1101/746438 — microbiology — Posted on 2019-08-27

596 Light-entrained and brain-tuned circadian circuits regulate ILC3 and gut homeostasis

Godinho-Silva, C.; Domingues, R. G.; Rendas, M.; Raposo, B.; Ribeiro, H.; Alves da Silva, J.; Vieira, A.; Costa, R. M.; Barbosa-Morais, N. L.; Carvalho, T.; Veiga-Fernandes, H.

10.1101/723932 — immunology — Posted on 2019-08-27

597 Paralog dependency indirectly affects the robustness of human cells

Dandage, R.; Landry, C. R.

10.1101/552208 — evolutionary biology — Posted on 2019-08-27

598 Freezing and water availability structure the evolutionary diversity of trees across the Americas

Segovia, R. A.; Pennington, T.; Baker, T.; Coelho de Souza, F.; Neves, D.; Davis, C. C.; Armesto, J. J.; Olivera-Filho, A.; Dexter, K.

10.1101/728717 — ecology — Posted on 2019-08-27

599 Machine learning based detection of genetic and drug class variant impact on functionally conserved protein binding dynamics

Babbitt, G. A.; Fokoue, E. P.; Evans, J. R.; Diller, K. I.; Adams, L. E.

10.1101/724211 — biophysics — Posted on 2019-08-27

600 PSX: Protein-Solvent Exchange - Software for calculation of deuterium-exchange effects in SANS measurements from protein coordinates

Pedersen, M. C.; Wang, Y.; Tidemand, F. G.; Martel, A.; Lindorff-Larsen, K.; Arleth, L.

10.1101/609859 — biophysics — Posted on 2019-08-27

601 Radial contractility of Actomyosin-II rings facilitates cargo trafficking and maintains axonal structural stability following cargo-induced transient axonal expansion

Wang, T.; Li, W.; Martin, S.; Papadopulos, A.; Jiang, A.; Shamsollahi, G.; Amor, R.; Lanoue, V.; Padmanabhan, P.; Meunier, F.

10.1101/492959 — neuroscience — Posted on 2019-08-27

602 Bacterial predator-prey coevolution accelerates genome evolution and selects on virulence-associated prey defences

Nair, R. R.; Vasse, M.; Wielgoss, S.; Sun, L.; Yu, Y.-T. N.; Velicer, G. J.

10.1101/398495 — evolutionary biology — Posted on 2019-08-27

603 HYPERsol: flash-frozen results from archival FFPE tissue for clinical proteomics

Marchione, D. M.; Ilieva, I.; Garcia, B. A.; Pappin, D. J.; Wilson, J. P.; Wojcik, J. B.

10.1101/632315 — cancer biology — Posted on 2019-08-27

604 Determining Temporal Stability in Dominance Hierarchies

Vilette, C.; Bonnell, T.; Henzi, S. P.; Barrett, L.

10.1101/692384 — animal behavior and cognition — Posted on 2019-08-27

605 Identification of miRNAs and associated pathways regulated by Leukemia Inhibitory Factor in trophoblastic cell lines

Morales-Prieto, D. M.; Barth, E.; Murrieta-Coxca, J. M.; Favaro, R. R.; Gutierrez-Samudio, R. N.; Chaiwangyen, W.; Ospina-Prieto, S.; Gruhn, B.; Schleussner, E.; Marz, M.; Markert, U. R.

10.1101/410381 — molecular biology — Posted on 2019-08-27

606 Fitness-Dependent Recombination Can Be Evolutionarily Advantageous in Diploids: a Deterministic Mutation-Selection-Balance Model

Rybnikov, S. R.; Frenkel, Z. M.; Korol, A. B.

10.1101/381228 — evolutionary biology — Posted on 2019-08-27

607 Pervasive and diverse collateral sensitivity profiles inform optimal strategies to limit antibiotic resistance

Maltas, J.; Wood, K. B.

10.1101/241075 — evolutionary biology — Posted on 2019-08-27

608 How long do Red Queen dynamics survive under genetic drift? A comparative analysis of evolutionary and eco-evolutionary models

Schenk, H.; Schulenburg, H.; Traulsen, A.

10.1101/490201 — evolutionary biology — Posted on 2019-08-27

609 Bayesian model discrimination for partially-observed epidemic models

Walker, J. N.; Black, A. J.; Ross, J. V.

10.1101/646067 — epidemiology — Posted on 2019-08-27

610 Dissecting the dilemma between in vitro and in vivo drug screening: treating HepG2 cells with Artesunate as a model

Wong, K. U.; Shi, S. L.; Wang, H.; Xing, F.; Quan, Y.; Zhao, M.; Zhang, L.; Wong, K. H.; Wong, A. H.; Deng, C.

10.1101/499723 — cell biology — Posted on 2019-08-27

611 Identification of genes involved in the differentiation of R7y and R7p photoreceptor cells in Drosophila

Earl, J. B.; Vanderlinden, L. A.; Saba, L. M.; Britt, S. G.

10.1101/748095 — genetics — Posted on 2019-08-26

612 Intrinsically ball retrieving wolf puppies reveal standing ancestral variation for human-directed play behaviour

Hansen Wheat, C.; Temrin, H.

10.1101/744862 — evolutionary biology — Posted on 2019-08-26

613 GenomeScope 2.0 and Smudgeplots: Reference-free profiling of polyploid genomes

Ranallo-Benavidez, T. R.; Jaron, K. S.; Schatz, M. C.

10.1101/747568 — bioinformatics — Posted on 2019-08-26

614 Expansion of CRISPR loci with multiple memories of infection enables the survival of structured bacterial communities

Pyenson, N. C.; Marraffini, L. A.

10.1101/747212 — microbiology — Posted on 2019-08-26

615 The Angiosarcoma Project: enabling genomic and clinical discoveries in a rare cancer through patient-partnered research

Painter, C. A.; Jain, E.; Tomson, B. N.; Dunphy, M.; Stoddard, R. E.; Thomas, B. S.; Damon, A. L.; Shah, S.; Kim, D.; Gomez Tejeda Zanudo, J.; Hornick, J. L.; Chen, Y.-L.; Merriam, P.; Raut, C. P.; Demetri, G. D.; Van Tine, B. A.; Lander, E. S.; Golub, T.; Wagle, N.

10.1101/741744 — cancer biology — Posted on 2019-08-26

616 Myoviridae Phage PDX Kills Enteroaggregative Escherichia coli without Human Microbiome Dysbiosis

Cepko, L.; Garling, E.; Dinsdale, M.; Scott, W. P.; Bandy, L.; Faber-Hammond, J.; Nice, T. J.; Mellies, J.

10.1101/385104 — microbiology — Posted on 2019-08-26

617 Systematic integration of GATA transcription factors and epigenomes via IDEAS paints the regulatory landscape of mouse hematopoietic cells

Hardison, R. C.; Zhang, Y.; Keller, C. A.; Xiang, G.; Heuston, E.; An, L. C.; Lichtenberg, J.; Giardine, B. M.; Bodine, D.; Mahony, S.; Li, Q.; Yue, F.; Weiss, M. J.; Blobel, G. A.; Taylor, J.; Hughes, J.; Higgs, D. R.; Gottgens, B.

10.1101/730358 — genomics — Posted on 2019-08-26

618 SGID: a comprehensive and interactive database of the silkworm

Zhu, Z.; Guan, Z.; Liu, G.; Wang, Y.; Zhang, Z.

10.1101/739961 — bioinformatics — Posted on 2019-08-26

619 Hedgehog signaling regulates neurogenesis in the larval and adult zebrafish hypothalamus

Male, I.; Ozacar, A. T.; Fagan, R. R.; Loring, M. D.; Shen, M.-C.; Pace, V.; Devine, C. A.; Lutservitz, A.; Karlstrom, R. O.

10.1101/740613 — neuroscience — Posted on 2019-08-26

620 Non-cell autonomous choroid plexus-derived sAPPα regulates adult hippocampus proliferation and plasticity

Arnaud, K.; Oliveira Moreira, V.; Vincent, J.; Dallerac, G.; Le Poupon, C.; Richter, M.; Müller, U. C.; Rond-Reig, L.; Prochiantz, A.; Di Nardo, A. A.

10.1101/734103 — neuroscience — Posted on 2019-08-26

621 Dopaminergic neurons mediate male Drosophila courtship motivational state

Xia, W. g.; Sheng, W.; Ke, G. a.

10.1101/733733 — neuroscience — Posted on 2019-08-26

622 Universal Loop assembly (uLoop): open, efficient, and species-agnostic DNA fabrication

Pollak, B.; Matute, T.; Nunez, I.; Cerda, A.; Lopez, C.; Vargas, V.; Kan, A.; Bielinski, V.; von Dassow, P.; Dupont, C.; Federici, F.

10.1101/744854 — synthetic biology — Posted on 2019-08-26

623 Nf1 deletion results in depletion of the Lhx6 transcription factor and a specific loss of parvalbumin+ cortical interneurons

Angara, K.; Pai, E. L.-L.; Bilinovich, S. M.; Stafford, A. M.; Nguyen, J. T.; Paul, A.; Rubenstein, J. L.; Vogt, D.

10.1101/746214 — neuroscience — Posted on 2019-08-26

624 Single-cell molecular and cellular architecture of the mouse neurohypophysis

Chen, Q.; Leshkowitz, D.; Blechman, J.; Levkowitz, G.

10.1101/744466 — neuroscience — Posted on 2019-08-26

625 Regulation of circular RNA circNFATc3 in cancer cells alters proliferation, migration and oxidative phosphorylation

Karedath, T.; Al Dasim, F.; Ahmed, I.; Al-Qurashi, A.; Raza, A.; Scott Andrews, S.; Abdulsalam Ahmed, A.; Ali Mohamoud, Y.; Dermime, S.; Malek, J. A.

10.1101/741041 — molecular biology — Posted on 2019-08-26

626 Time elapsed between Zika and dengue virus infections affects antibody and T cell responses

Perez-Guzman, E. X.; Pantoja, P.; Serrano-Collazo, C.; Hassert, M. A.; Ortiz-Rosa, A.; Rodriguez, I. V.; Giavedoni, L.; Hodara, V.; Parodi, L.; Cruz, L.; Arana, T.; White, L. J.; Martinez, M. I.; Weiskopf, D.; Brien, J. D.; de Silva, A.; Pinto, A. K.; Sariol, C. A.

10.1101/621094 — microbiology — Posted on 2019-08-26

627 Just how big is intraspecific trait variation in basidiomycete wood fungal fruit bodies?

Dawson, S. K.; Jonsson, M.

10.1101/593517 — ecology — Posted on 2019-08-26

628 Long-Term Potentiation Induces Extrasynaptic Exocytosis of Glun2A-containing NMDA Receptors that is Mainly Controlled by SNAP-23

Yu, X.; Li, W.; Wang, T.

10.1101/746404 — cell biology — Posted on 2019-08-26

629 Interactions of pharmaceutical companies with world countries, cancers and rare diseases from Wikipedia network analysis

Rollin, G.; Lages, J.; Serebriyskaya, T. S.; Shepelyansky, D. L.

10.1101/614016 — bioinformatics — Posted on 2019-08-26

630 Modulation of muscle cell Insr and insulin receptor signaling by hyperinsulinemia in vitro and in vivo

Cen, H. H.; Botezelli, J. D.; Wang, S.; Johnson, J. D.

10.1101/556571 — physiology — Posted on 2019-08-26

631 The utility of Saw-scaled viper, Echis pyramidum, and Kenyan sand boa, Eryx colubrinus as bioindicator of heavy metals bioaccumulation in relation to DPTA soil extract and biological consequences.

Sleem, D. M. M.; Kadry, M. A. M.; Mohallal, E. M. E.; Marie, M. A. S.

10.1101/311357 — pharmacology and toxicology — Posted on 2019-08-26

632 Spatio-temporal dynamics of face perception

Muukkonen, I.; Olander, K.; Numminen, J.; Salmela, V.

10.1101/550038 — neuroscience — Posted on 2019-08-26

633 Obesity and brain topological organization differences throughout the lifespan

Ottino-Gonzalez, J.; Baggio, H. C.; Jurado, M. A.; Segura, B.; Caldu, X.; Prats-Soteras, X.; Tor, E.; Sender-Palacios, M. J.; Miro, N.; Sanchez-Garre, C.; Dadar, M.; Dagher, A.; Garcia Garcia, I.; Garolera, M.

10.1101/685081 — neuroscience — Posted on 2019-08-26

634 Language beyond the language system: dorsal visuospatial pathways support processing of demonstratives and spatial language during naturalistic fast fMRI

Rocca, R.; Coventry, K. R.; Tylen, K.; Staib, M.; Lund, T. E.; Wallentin, M.

10.1101/651257 — neuroscience — Posted on 2019-08-26

635 A machine learning approach to identifying objectivebiomarkers of anxiety and stress

Ramakrishnan, A.; Pardes, A.; Lynch, W.; Molaro, C.; Platt, M. L.

10.1101/745315 — neuroscience — Posted on 2019-08-26

636 Human Neocortical Neurosolver (HNN): A new software tool for interpreting the cellular and network origin of human MEG/EEG data

Neymotin, S. A.; Daniels, D. S.; Caldwell, B.; McDougal, R. A.; Carnevale, N. T.; Jas, M.; Moore, C. I.; Hines, M. L.; Hamalainen, M.; Jones, S. R.

10.1101/740597 — neuroscience — Posted on 2019-08-26

637 A flexible and generalizable model of online latent-state learning

Cochran, A. L.; Cisler, J. M.

10.1101/443234 — neuroscience — Posted on 2019-08-26

638 Progressive alignment with Cactus: a multiple-genome aligner for the thousand-genome era

Armstrong, J.; Hickey, G.; Diekhans, M.; Deran, A.; Fang, Q.; Xie, D.; Feng, S.; Stiller, J.; Genereux, D.; Johnson, J.; Marinescu, V. D.; Haussler, D.; Alföldi, J.; Lindblad-Toh, K.; Karlsson, E.; Jarvis, E. D.; Zhang, G.; Paten, B.

10.1101/730531 — genomics — Posted on 2019-08-26

639 CRISPR-Cas off-target detection using Oxford Nanopore sequencing - is the mitochondrial genome more vulnerable to off-targets?

Chakraborty, S.

10.1101/741322 — genomics — Posted on 2019-08-26

640 Assortative mating in hybrid zones is remarkably ineffective in promoting speciation

Irwin, D. E.

10.1101/637678 — evolutionary biology — Posted on 2019-08-26

641 An empirical test of the role of small-scale transmission in large-scale disease dynamics

Mihaljevic, J. R.; Polivka, C. M.; Mehmel, C. J.; Li, C.; Dukic, V.; Dwyer, G.

10.1101/285080 — ecology — Posted on 2019-08-26

642 PalaeoChip Arctic1.0: An optimised eDNA targeted enrichment approach to reconstructing past environments

Murchie, T. J.; Kuch, M.; Duggan, A.; Ledger, M. L.; Roche, K.; Klunk, J.; Karpinski, E.; Hackenberger, D.; Sadoway, T.; MacPhee, R.; Froese, D.; Poinar, H.

10.1101/730440 — ecology — Posted on 2019-08-26

643 Atrous Convolution with transfer learning for Skin Lesions Classification

Ratul, M. A. R.; Mozaffari, M. H.; Parimbelli, E.; Lee, W.

10.1101/746388 — cancer biology — Posted on 2019-08-26

644 MetaNovo: a probabilistic approach to peptide and polymorphism discovery in complex mass spectrometry datasets

Potgieter, M. G.; Nel, A. J.; Fortuin, S.; Garnett, S.; Wendoh, J. M.; Tabb, D. L.; Mulder, N.; Blackburn, J.

10.1101/605550 — bioinformatics — Posted on 2019-08-26

645 Control of Cardiac Mitochondrial Fuel Selection by Calcium

Jones, E.; Kandel, S. M.; Dasika, S. K.; Nourabadi, N.; Van den Bergh, F.; Sub Choi, H.; Haidar, A.; Dash, R. K.; Beard, D. A.

10.1101/198895 — biochemistry — Posted on 2019-08-26

646 A NanoLuc luciferase-based assay enabling the real-time analysis of protein secretion and injection by bacterial type III secretion systems

Westerhausen, S.; Nowak, M.; Torres-Vargas, C. E.; Bilitewski, U.; Bohn, E.; Grin, I.; Wagner, S.

10.1101/745471 — microbiology — Posted on 2019-08-25

647 MACF1 Facilitates SMAD7 Nuclear Translocation to Drive Bone Formation in Mice

Zhao, F.; Ma, X.; Qiu, W.; Wang, P.; Zhang, R.; Chen, Z.; Su, P.; Zhang, Y.; Li, D.; Ma, J.; Yang, C.; Chen, L.; Ying, C.; Tian, Y.; Hu, L.; Li, Y.; Zhang, G.; Wu, X.; Qian, A.

10.1101/743930 — developmental biology — Posted on 2019-08-25

648 The CHORD protein CHP-1 regulates EGF receptor trafficking and signaling in C. elegans and human cells

Haag, A.; Walser, M.; Henggeler, A.; Hajnal, A.

10.1101/745984 — cell biology — Posted on 2019-08-25

649 Gut microbiome diversity detected by high-coverage 16S and shotgun sequencing of matched stool and colon biopsy samples

Mas-Lloret, J.; Obon-Santacana, M.; Ibanez-Sanz, G.; Guino, E.; Pato, M. L.; Rodriguez-Moranta, F.; Mata, A.; Garcia-Rodriguez, A.; Moreno, V.; Pimenoff, V. N.

10.1101/742635 — bioinformatics — Posted on 2019-08-25

650 Breast tumor-associated metalloproteases restrict reovirus oncolysis by cleaving the σ1 cell-attachment protein, and can be overcome by mutation of σ1

Fernandes, J.; Cristi, F.; Eaton, H. E.; Chen, P.; Haeflinger, S.; Bernard, I.; Hitt, M.; Shmulevitz, M.

10.1101/742478 — microbiology — Posted on 2019-08-25

651 Insight into the resistome and quorum sensing system of a divergent Acinetobacter pittii isolate from an untouched site of the Lechuguilla Cave

Gan, H. M.; Wengert, P.; Penix, T.; Barton, H.; Hudson, A. O.; Savka, M.

10.1101/745182 — microbiology — Posted on 2019-08-25

652 Characterization of LXR-activating nanoparticle formulations in primary mouse macrophages

Smith, T. T.; Kahiel, Z.; LeBlond, N. D.; Ghorbani, P.; Farah, E.; Cote, M.; Gadde, S.; Fullerton, M. D.

10.1101/746784 — biochemistry — Posted on 2019-08-25

653 Proteinase-Activated Receptor 4 (PAR4) Activation Triggers Cell Membrane Blebbing through RhoA and β-arrestin

Vanderboor, C. M.; Thibeault, P. E.; Nixon, K. C.; Gros, R.; Kramer, J. M.; Ramachandran, R.

10.1101/746677 — pharmacology and toxicology — Posted on 2019-08-25

654 Ongoing repair of migration-coupled DNA damage allows stem cells to reach wound sites

Sahu, S.; Sridhar, D.; Abnave, P.; Thompson, J.; Dattani, A.; Kosaka, N.; Hill, M.; Aboobaker, A.

10.1101/746701 — developmental biology — Posted on 2019-08-25

655 Fatty acid-induced lipotoxicity inhibits choline metabolism independent of ER stress in mouse primary hepatocytes

O'Dwyer, C.; Yaworski, R.; LeBlond, N. D.; Ghorbani, P.; Nunes, J. R.; Margison, K. D.; Smith, T. T.; Gobeil Odai, K.; Han, S.; Fullerton, M. D.

10.1101/746750 — cell biology — Posted on 2019-08-25

656 In vitro hepatitis C virus infection and hepatic choline metabolism

Gobeil Odai, K.; O'Dwyer, C.; Steenbergen, R.; Shaw, T. A.; Renner, T. M.; Ghorbani, P.; Rezaaifar, M.; Han, S.; Langlois, M.-A.; Crawley, A. M.; Russell, R. S.; Pezacki, J. P.; Tyrrell, D. L.; Fullerton, M. D.

10.1101/746776 — cell biology — Posted on 2019-08-25

657 Engineering self-homing circulating tumour cells as novel cancer theranostics

Parkins, K. M.; Dubois, V. P.; Kelly, J. J.; Chen, Y.; Foster, P. J.; Ronald, J. A.

10.1101/746685 — cancer biology — Posted on 2019-08-25

658 Molecular Basis for G-protein-Coupled Receptor (GPCR) Activation and Biased Signalling at the Platelet Thrombin Receptor Proteinase Activated Receptor-4 (PAR4)

Thibeault, P.; LeSarge, J. C.; Arends, D.; Fernandes, M.; Chidiac, P.; Stathopulos, P.; Luyt, L. G.; Ramachandran, R.

10.1101/746693 — pharmacology and toxicology — Posted on 2019-08-25

659 Cyclophilin A protects HIV-1 from restriction by human TRIM5α

Kim, K.; Dauphin, A.; Komurlu, S.; Yurkovetskiy, L.; Diehl, W. E.; McCauley, S. M.; Carbone, C.; Strambio-De-Castillia, C.; Campbell, E. M.; Luban, J.

10.1101/587907 — microbiology — Posted on 2019-08-24

660 Geomagnetic field intensity as a cue for the regulation of insect migration

Wan, G.; Liu, R.; Li, C.; He, J.; Pan, W.; Sword, G. A.; Hu, G.; Chen, F.

10.1101/733782 — animal behavior and cognition — Posted on 2019-08-24

661 On the cortical mapping function -- visual space, cortical space, and crowding

Strasburger, H.

10.1101/621458 — neuroscience — Posted on 2019-08-24

662 Identification of \"Missing Link\" Families of Small DNA Tumor Viruses

Welch, N. L.; Tisza, M. J.; Belford, A.; Pastrana, D. V.; Pang, Y.-Y. S.; Schiller, J. T.; An, P.; Cantalupo, P. G.; Pipas, J. M.; Koda, S.; Subrimaniam, K.; Waltzek, T. B.; Bian, C.; Shi, Q.; Ruan, Z.; Ng, T. F.; Starrett, G. J.; Buck, C. B.

10.1101/697771 — microbiology — Posted on 2019-08-24

663 Characterization of the mycobiome of the seagrass, Zostera marina, reveals putative associations with marine chytrids

Ettinger, C. L.; Eisen, J. A.

10.1101/735050 — microbiology — Posted on 2019-08-24

664 SimpactCyan 1.0: An Open-source Simulator for Individual-Based Models in HIV Epidemiology with R and Python Interfaces

Liesenborgs, J.; Hendrickx, D. M.; Kuylen, E.; Niyukuri, D.; Hens, N.; Delva, W.

10.1101/440834 — epidemiology — Posted on 2019-08-24

665 Improved Automatic Pharmacovigilance: An Enhancement to the MedWatcher Social System for Monitoring Adverse Events

Nguyen, A. T.; Lien, J.; Raff, E.; Mekaru, S. R.

10.1101/717421 — bioinformatics — Posted on 2019-08-24

666 Multiple overlapping hypothalamus-brainstem circuits drive rapid threat avoidance

Lovett-Barron, M.; Chen, R.; Bradbury, S.; Andalman, A. S.; Wagle, M.; Guo, S.; Deisseroth, K.

10.1101/745075 — neuroscience — Posted on 2019-08-24

667 Accurate error control in high dimensional association testing using conditional false discovery rates

Liley, J.; Wallace, C.

10.1101/414318 — genomics — Posted on 2019-08-24

668 Evaluating chromatin accessibility differences across multiple primate species using a joint modelling approach

Edsall, L. E.; Berrio, A.; Majoros, W. H.; Swain-Lenz, D.; Morrow, S.; Shibata, Y.; Safi, A.; Wray, G. A.; Crawford, G. E.; Allen, A. S.

10.1101/617951 — evolutionary biology — Posted on 2019-08-24

669 Generating and testing ecological hypotheses at the pondscape with environmental DNA metabarcoding: a case study on a threatened amphibian

Harper, L. R.; Lawson Handley, L.; Hahn, C.; Boonham, N.; Rees, H. C.; Lewis, E.; Adams, I. P.; Brotherton, P.; Phillips, S.; Hänfling, B.

10.1101/278309 — ecology — Posted on 2019-08-24

670 Mix-and-inject XFEL crystallography reveals gated conformational dynamics during enzyme catalysis

DasGupta, M.; Budday, D.; de Oliveira, S. H. P.; Madzelan, P.; Marchany-Rivera, D.; Seravalli, J.; Hayes, B.; Sierra, R. G.; Boutet, S.; Hunter, M.; Alonso-Mori, R.; Batyuk, A.; Wierman, J.; Lyubimov, A.; Brewster, A. S.; Sauter, N. K.; Applegate, G. A.; Tiwari, V. K.; Berkowitz, D. B.; Thompson, M. C.; Cohen, A. E.; Fraser, J. S.; Wall, M. E.; van den Bedem, H.; Wilson, M. A.

10.1101/524751 — biochemistry — Posted on 2019-08-24

671 Developmental stage-specific distribution of macrophages in mouse mammary gland

Stewart, T. A.; Hughes, K.; Hume, D. A.; Davis, F. M.

10.1101/746511 — developmental biology — Posted on 2019-08-24

672 Preparation of DPPC liposomes using probe-tip sonication: investigating intrinsic factors affecting temperature phase transitions

Rieth, M. D.; Lozano, A.

10.1101/742437 — biophysics — Posted on 2019-08-24

673 Stochastic model of BKPy Virus replication and assembly

Stiegelmeyer, S. M.; Jeffers-Francis, L. K.; Giddings, M. C.; Webster-Cyriaque, J.

10.1101/746149 — bioinformatics — Posted on 2019-08-24

674 Analytical characterization of Parylene-C degradation mechanisms on Utah arrays: evaluation of in vitro Reactive Accelerated Aging model compared to multiyear in vivo implantation

Caldwell, R.; Street, M. G.; Sharma, R.; Takmakov, P.; Baker, B.; Rieth, L.

10.1101/743831 — bioengineering — Posted on 2019-08-24

675 An easy-to-assemble, robust, and lightweight drive implant for chronic tetrode recordings in freely moving animals

Voigts, J.; Newman, J.; Wilson, M. A.; Harnett, M.

10.1101/746651 — neuroscience — Posted on 2019-08-24

676 Evolution of resistance in vitro reveals a novel mechanism of artemisinin activity in Toxoplasma gondii.

Rozenberg, A.; Luth, M. R.; Behnke, M.; Winzeler, E.; Sibley, L. D.

10.1101/746065 — microbiology — Posted on 2019-08-24

677 Extending the small molecule similarity principle to all levels of biology

Duran-Frigola, M.; Pauls, E.; Gitart-Pla, O.; Bertoni, M.; Alcalde, V.; Amat, D.; Juan-Blanco, T.; Aloy, P.

10.1101/745703 — bioinformatics — Posted on 2019-08-24

678 Universal Loop assembly (uLoop): open, efficient, and species-agnostic DNA fabrication

Pollak, B.; Matute, T.; Nunez, I.; Cerda, A.; Lopez, C.; Vargas, V.; Kan, A.; Bielinski, V.; von Dassow, P.; Dupont, C.; Federici, F.

10.1101/744854 — synthetic biology — Posted on 2019-08-24

679 Evaluation of the impact of seasonal variations in photoperiod on the hepatic metabolism of medaka (Oryzias latipes)

Fujisawa, K.; Takami, T.; Shintani, H.; Sasai, N.; Matsumoto, T.; Yamamoto, N.; Sakaida, I.

10.1101/745646 — physiology — Posted on 2019-08-24

680 Phase-based coordination of hippocampal and neocortical oscillations during human sleep

Cox, R.; Ruber, T.; Staresina, B.; Fell, J.

10.1101/745745 — neuroscience — Posted on 2019-08-24

681 Complex symbiont-pathogen interactions inhibit intestinal repair

Fast, D.; Petkau, K.; Ferguson, M.; Shin, M.; Galenza, A.; Kostiuk, B.; Pukatzki, S.; Foley, E.

10.1101/746305 — immunology — Posted on 2019-08-24

682 Seasonal Effects of Environmental Change on Yellow-Bellied Marmot Population Dynamics

Paniw, M.; Childs, D.; Armitage, K. B.; Blumstein, D. T.; Martin, J.; Oli, M.; Ozgul, A.

10.1101/745620 — ecology — Posted on 2019-08-24

683 Wild songbirds exhibit consistent individual differences in inter-specific social behaviour

Hillemann, F.; Cole, E. F.; Farine, D. R.; Sheldon, B. C.

10.1101/746545 — animal behavior and cognition — Posted on 2019-08-24

684 Long-Term Potentiation Induces Extrasynaptic Exocytosis of Glun2A-containing NMDA Receptors that is Mainly Controlled by SNAP23

Yu, X.; Li, W.; Wang, T.

10.1101/746404 — cell biology — Posted on 2019-08-24

685 The loss of ATRX/DAXX complex disturbs rDNA heterochromatinization and promotes development of glioma

Cheng, X.; Jiang, Q.; Hu, X.; Huang, X.; Liu, H.; Wei, Y.; Li, N.; Wang, N.; Shen, J.; Zhang, Y.; Lei, L.

10.1101/745307 — cancer biology — Posted on 2019-08-24

686 Protein-surfactant-polysaccharide nanoparticles increase the catalytic activity of an engineered β-lactamase maltose-activated switch enzyme

Fuenzalida Werner, J. P.; xiong, T.; Moerschbacher, B. M.; Ostermeier, M.; Goycoolea, F. M.

10.1101/746560 — biochemistry — Posted on 2019-08-24

687 Introns Control Intrinsic Noise

Sands, B.; Yun, S. R.; Mendenhall, A. R.

10.1101/746263 — systems biology — Posted on 2019-08-24

688 Practicing one thing at a time: the secret to reward-based learning?

van der Kooij, K.; van Mastrigt, N.; Smeets, J.

10.1101/745778 — neuroscience — Posted on 2019-08-24

689 Rewards interact with explicit knowledge to enhance skilled motor performance

Anderson, S. P.; Adkins, T. J.; Gary, B. S.; Lee, T.

10.1101/745851 — neuroscience — Posted on 2019-08-24

690 PLD3 is a neuronal lysosomal phospholipase D associated with β-amyloid plaques and cognitive function in Alzheimer’s disease

Nackenoff, A. G.; Hohman, T. J.; Neuner, S. M.; Akers, C. S.; Weitzel, N. C.; Shostak, A.; Ferguson, S.; Bennett, D. A.; Schneider, J. A.; Jefferson, A. L.; Kaczorowski, C. C.; Schrag, M. S.

10.1101/746222 — neuroscience — Posted on 2019-08-24

691 Hormone Levels Are Related to Altered Functional Connectivity in Prolactinomas

Yao, S.; Cao, C.; Lin, P.; Juvekar, P.; Zhang, R.-Y.; Vera, M.; Zeng, A.; Golby, A. J.; Xu, G.; Tie, Y.; Song, J.

10.1101/746297 — neuroscience — Posted on 2019-08-24

692 Cross frequency coupling in next generation inhibitory neural mass models

Ceni, A.; Olmi, S.; Torcini, A.; Angulo-Garcia, D.

10.1101/745828 — neuroscience — Posted on 2019-08-24

693 Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive front

Schürch, C. M.; Bhate, S. S.; Barlow, G. L.; Phillips, D. J.; Noti, L.; Zlobec, I.; Chu, P.; Black, S.; Demeter, J.; McIlwain, D. R.; Samusik, N.; Goltsev, Y.; Nolan, G. P.

10.1101/743989 — immunology — Posted on 2019-08-24

694 Single-cell analysis of intestinal immune cells during helminth infection

Ferrer-Font, L.; Mehta, P.; Harmos, P.; Schmidt, A.; Price, K. M.; Hermans, I. F.; Ronchese, F.; Le Gros, G.; Mayer, J. U.

10.1101/746479 — immunology — Posted on 2019-08-24

695 Multi-resolution single-cell state characterization via joint archetypal/network analysis

Mohammadi, S.; Davila-Velderrain, J.; Kellis, M.

10.1101/746339 — genomics — Posted on 2019-08-24

696 Evolution of linkage and genome expansion in protocells

Szilagyi, A.; Kovacs, V. P.; Szathmary, E.; Santos, M.

10.1101/746495 — evolutionary biology — Posted on 2019-08-24

697 Effect of synaptic cell-to-cell transmission and recombination on the evolution of double mutants in HIV

Kreger, J.; Komarova, N. L.; Wodarz, D.

10.1101/746131 — evolutionary biology — Posted on 2019-08-24

698 Galactose-modified duocarmycin prodrugs as senolytics

Guerrero, A.; Guiho, R.; Herranz, N.; Uren, A.; Withers, D.; Martinez-Barbera, J. P.; Tietze, L.; Gil, J.

10.1101/746669 — cell biology — Posted on 2019-08-24

699 Structural basis for EPC1-mediated recruitment of MBTD1 into the NuA4/TIP60 acetyltransferase complex

zhang, h.; Devoucoux, M.; li, l.; Ayaz, G.; cheng, h.; Tempel, W.; dong, c.; Loppnau, P.; Cote, J.; min, j.

10.1101/746180 — biochemistry — Posted on 2019-08-24

700 Herpes Simplex nucleoprotein creates a competitive environment facilitating robust viral transcription and host shut off

DeLuca, N. A.; Dremel, S. E.

10.1101/746289 — genomics — Posted on 2019-08-24

701 Automatic mutual information noise omission (AMINO): generating order parameters for molecular systems

Ravindra, P.; Smith, Z.; Tiwary, P.

10.1101/745968 — biophysics — Posted on 2019-08-24

702 Natural variation in the Arabidopsis AGO2 gene is associated with susceptibility to potato virus X

Brosseau, C.; Adurogbangba, A.; Roussin-Leveillee, C.; Zhao, Z.; Biga, S.; Moffett, P.

10.1101/746628 — plant biology — Posted on 2019-08-24

703 Dynamic architecture and regulatory implications of the miRNA network underlying the response to stress in melon

Sanz-Carbonell, A.; Marques, M. C.; Martinez, G.; Gomez, G.

10.1101/745653 — plant biology — Posted on 2019-08-24

704 An impressive capacity for cold tolerance plasticity protects against ionoregulatory collapse in the disease vector, Aedes aegypti

Jass, A.; Yerushalmi, G. Y.; Davis, H. E.; Donini, A.; MacMillan, H. A.

10.1101/745885 — physiology — Posted on 2019-08-24

705 Different clones for different contexts: Hippocampal cognitive maps as higher-order graphs of a cloned HMM

Gothoskar, N.; Guntupalli, J. S.; Rikhye, R. V.; Lazaro-Gredilla, M.; George, D.

10.1101/745950 — neuroscience — Posted on 2019-08-24

706 PAG neurons encode a simplified action-selective signal during aggression

Falkner, A. L.; Wei, D.; Song, A.; Watsek, L. W.; Chen, I.; Feng, J. E.; Lin, D.

10.1101/745067 — neuroscience — Posted on 2019-08-24

707 A neural network model of flexible grasp movement generation

Michaels, J. A.; Schaffelhofer, S.; Agudelo-Toro, A.; Scherberger, H.

10.1101/742189 — neuroscience — Posted on 2019-08-24

708 A systematic survey of PRMT interactomes reveals the key roles of arginine methylation in the global control of RNA splicing and translation

Wei, H.-H.; Fan, X.-J.; Hu, Y.; Guo, M.; Fang, Z.-Y.; Wu, P.; Tian, X.-X.; Gao, S.-X.; Peng, C.; Yang, Y.; Wang, Z.

10.1101/746529 — molecular biology — Posted on 2019-08-24

709 High-throughput multi-parallel enteropathogen quantification via nano-liter qPCR

Grembi, J. A.; Mayer-Blackwell, K.; Luby, S. P.; Spormann, A. M.

10.1101/746446 — microbiology — Posted on 2019-08-24

710 Succession of bacterial communities on carrion is independent of vertebrate scavengers

Dangerfield, C. R.; Frehner, E. H.; Buechley, E. R.; Sekercioglu, C. H.; Brazelton, W. J.

10.1101/744748 — microbiology — Posted on 2019-08-24

711 Inhibition of Microbial Beta-Glucuronidase Does Not Prevent Breast Carcinogenesis in the Polyoma Middle T Mouse

Mani, A.; Li, H.; Evrin, S.; Redinbo, M. R.; Mani, S.

10.1101/746602 — cancer biology — Posted on 2019-08-24

712 The efficiency for recombineering is dependent on the source of the phage recombinase function unit

Chang, Y.; Wang, Q.; Su, T.; Qi, Q.

10.1101/745448 — bioinformatics — Posted on 2019-08-24

713 Spectroscopy and Machine Learning Based Rapid Point-of-Care Assessment of Core Needle Cancer Biopsies

Keshavamurthy, K. N.; Dylov, D. V.; Yazdanfar, S.; Patel, D.; Silk, T.; Silk, M. T.; Jacques, F.; Petre, E. N.; Gonen, M.; Rekhtman, N.; Ostroverkhov, V.; Scher, H. I.; Solomon, S. B.; Durack, J. C.

10.1101/745158 — bioinformatics — Posted on 2019-08-24

714 Functional Anabolic Network Analysis of Human-associated Lactobacillus Strains

Moutinho, T. J.; Neubert, B. C.; Jenior, M. L.; Carey, M. A.; Medlock, G. L.; Kolling, G. L.; Papin, J. A.

10.1101/746420 — systems biology — Posted on 2019-08-24

715 Demonstrating and disrupting well-learned habits

Ceceli, A. O.; Myers, C. E.; Tricomi, E.

10.1101/745356 — neuroscience — Posted on 2019-08-24

716 The Neural Basis of Predictive Pursuit

Yoo, S. B. M.; Tu, J. C.; Piantadosi, S.; Hayden, B. Y.

10.1101/694604 — neuroscience — Posted on 2019-08-24

717 A robust deep neural network for denoising task-based fMRI data: An application to working memory and episodic memory

Yang, Z.; Zhuang, X.; Sreenivasan, K.; Mishra, V. R.; Curran, T.; Cordes, D.

10.1101/746313 — neuroscience — Posted on 2019-08-24

718 Network models predict that pyramidal neuron hyperexcitability and synapse loss in the dlPFC lead to age-related spatial working memory impairment in rhesus monkeys

Ibanez, S.; Luebke, J. I.; Chang, W.; Draguljic, D.; Weaver, C. M.

10.1101/745901 — neuroscience — Posted on 2019-08-24

719 Neural circuits in the mouse retina support color vision in the upper visual field

Szatko, K. P.; Korympidou, M. M.; Ran, Y.; Berens, P.; Dalkara, D.; Schubert, T.; Euler, T.; Franke, K.

10.1101/745539 — neuroscience — Posted on 2019-08-24

720 Brain wiring and supragranular-enriched genes linked to protracted human frontal cortex development.

Hendy, J. P.; Takahashi, E.; van der Kouwe, A. J.; Charvet, C. J.

10.1101/746248 — neuroscience — Posted on 2019-08-24

721 Novel Proteomic changes in Yeast Mitochondria provide insights into mitochondrial functioning upon over-expression of human p53

Bhat, J. P.; Redhu, D. A. K.

10.1101/746412 — molecular biology — Posted on 2019-08-24

722 The translation inhibitor cycloheximide affects ribosome profiling data in a species-specific manner

Sharma, P.; Nilges, B. S.; Wu, J.; Leidel, S. A.

10.1101/746255 — molecular biology — Posted on 2019-08-24

723 ER reorganization and intracellular retention of CD58 are functionally independent properties of the human cytomegalovirus ER resident glycoprotein UL148

Nguyen, C. C.; Domma, A. J.; Zhang, H.; Kamil, J. P.

10.1101/746438 — microbiology — Posted on 2019-08-24

724 Antiviral activity of N-ω-Chloroacetyl-L-Ornithine on in vitro replication of Chikungunya virus

Luna-Rojas, L.; Avila-Trejo, A.; Alcantara-Farfan, V.; Rodriguez-Paez, L.; Pastor-Alonso, O.; Aguilar Faisal, L.

10.1101/745455 — microbiology — Posted on 2019-08-24

725 Interleukin-4 signaling plays a major role in urogenital schistosomiasis-associated bladder pathogenesis

Mbanefo, E.; Fu, C.-L.; Ho, C.; Le, L.; Ishida, K.; Hsieh, M.

10.1101/746552 — immunology — Posted on 2019-08-24

726 Practical Aspects of Phylogenetic Network Analysis Using PhyloNet

Cao, Z.; Liu, X.; Ogilvie, H. A.; Yan, Z.; Nakhleh, L.

10.1101/746362 — evolutionary biology — Posted on 2019-08-24

727 Improved Modeling of Peptide-Protein Binding through Global Docking and Accelerated Molecular Dynamics Simulations

Wang, j.; Alekseenko, A.; Kozakov, D.; Miao, Y.

10.1101/743773 — biophysics — Posted on 2019-08-24

728 A curated benchmark of enhancer-gene interactions for evaluating enhancer-target gene prediction methods

Moore, J. E.; Pratt, H.; Purcaro, M.; Weng, Z.

10.1101/745844 — bioinformatics — Posted on 2019-08-24

729 Winner(s)-take-all: nonlinear amplification of DNA-encoded library

Cui, M.; Reddavide, F.; Heiden, S.; Thompson, M.; Mannocci, L.; Zhang, Y.

10.1101/744680 — bioengineering — Posted on 2019-08-24

730 Enzyme-free synthesis of natural phospholipids in water

Liu, L.; Zou, Y.; Bhattacharya, A.; Zhang, D.; Lang, S. Q.; Houk, K. N.; Devaraj, N. K.

10.1101/746156 — biochemistry — Posted on 2019-08-24

731 A Quantitative Single-Cell Proteomics Approach to Characterize an Acute Myeloid Leukemia Hierarchy

Schoof, E. M.; Rapin, N.; Savickas, S.; Gentil, C.; Lechman, E.; Haile, J. S.; auf dem Keller, U.; Dick, J. E.; Porse, B.

10.1101/745679 — systems biology — Posted on 2019-08-24

732 Nf1 deletion results in depletion of the Lhx6 transcription factor and a specific loss of parvalbumin+ cortical interneurons

Vogt, K.; Pai, E. L.-L.; Bilinovich, S. M.; Stafford, A. M.; Nguyen, J. T.; Paul, A.; Rubenstein, J. L.; Vogt, D.

10.1101/746214 — neuroscience — Posted on 2019-08-24

733 An Interpretable Performance Metric for Auditory Attention Decoding Algorithms in a Context of Neuro-Steered Gain Control

Geirnaert, S.; Francart, T.; Bertrand, A.

10.1101/745695 — neuroscience — Posted on 2019-08-24

734 Gut Microbiome Biomarkers in Adolescent Obesity：a Regional Study

Gao, X.; Wu, B.; Pan, Y.; Zhou, S.; Zhang, M.; Cai, Y.; Liang, Y.

10.1101/745489 — microbiology — Posted on 2019-08-24

735 CRISPR-Cas9 mediated genome editing in vancomycin resistant Enterococcus faecium

de Maat, V.; Stege, P. B.; Dedden, M.; Hamer, M.; van Pijkeren, J.-P.; Willems, R. J.; van Schaik, W.

10.1101/745786 — microbiology — Posted on 2019-08-24

736 Longitudinal bioluminescent imaging of HIV-1 infection during antiretroviral therapy and treatment interruption in humanized mice

Ventura, J. D.; Beloor, J.; Allen, E. J.; Zhang, T.; Haugh, K.; Uchil, P.; Ochsenbauer, C.; Kieffer, C.; Kumar, P.; Hope, T. J.; Mothes, W.

10.1101/745125 — microbiology — Posted on 2019-08-24

737 Nanoluciferase-based Method for Detecting Gene Expression in C. elegans

Sfarcic, I.; Bui, T.; Daniels, E. C.; Troemel, E. R.

10.1101/745927 — genetics — Posted on 2019-08-24

738 Can natural selection favour indiscriminate spite?

Patel, M.; West, S. A.; Biernaskie, J. M.

10.1101/745638 — evolutionary biology — Posted on 2019-08-24

739 Sexual antagonism leads to a mosaic of X-autosome conflict

Frank, S. A.; Patten, M. M.

10.1101/746032 — evolutionary biology — Posted on 2019-08-24

740 Phylogenomics investigation of sparids (Teleostei: Spariformes) using high-quality proteomes highlights the importance of taxon sampling

Natsidis, P.; Tsakogiannis, A.; Pavlidis, P.; Tsigenopoulos, C. S.; Manousaki, T.

10.1101/746115 — evolutionary biology — Posted on 2019-08-24

741 Atrous Convolution with transfer learning for Skin Lesions Classification

Ratul, M. A. R.; Mozaffari, M. H.; Parimbelli, E.; Lee, W.

10.1101/746388 — cancer biology — Posted on 2019-08-24

742 A Latent Variable Model for Evaluation of Disparate Ratings of Stem Cell Colonies by Two Experts

Halter, M.; Lund, S.; Peskin, A.; li-baboud, Y.-S.; Bajcsy, P.; Aulov, O.; Hoeppner, D. J.; Chenoweth, J. G.; Kim, S.-K.; McKay, R. D.; Plant, A. L.

10.1101/746057 — bioinformatics — Posted on 2019-08-24

743 Algal photosynthesis converts nitric oxide into nitrous oxide

Burlacot, A.; Gosset, A.; RIchaud, P.; Li-Beisson, Y.; Peltier, G.

10.1101/745463 — plant biology — Posted on 2019-08-24

744 Cytokinin fluoroprobe and receptor CRE1/AHK4 localize to both plasma membrane and endoplasmic reticulum

Kubiasova, K.; Montesinos, J. C.; Samajova, O.; Nisler, J.; Mik, V.; Plihalova, L.; Novak, O.; Marhavy, P.; Zalabak, D.; Berka, K.; Dolezal, K.; Galuszka, P.; Samaj, J.; Strnad, M.; Benkova, E.; Plihal, O.; Spichal, L.

10.1101/744177 — plant biology — Posted on 2019-08-24

745 Transcriptional Dynamics of the Salicylic Acid Response and its Interplay with the Jasmonic Acid Pathway

Hickman, R.; Pereira Mendes, M.; Van Verk, M. C.; Van Dijken, A. J. H.; Di Sora, J.; Denby, K.; Pieterse, C. C. M. J.; Van Wees, S. C. M.

10.1101/742742 — plant biology — Posted on 2019-08-24

746 BiasDB: A Comprehensive Database for Biased GPCR Ligands

Omieczynski, C.; Nguyen, T. N.; Sribar, D.; Deng, L.; Stepanov, D.; Schaller, D.; Wolber, G.; Bermudez, M.

10.1101/742643 — pharmacology and toxicology — Posted on 2019-08-24

747 A machine learning approach to identifying objectivebiomarkers of anxiety and stress

Ramakrishnan, A.; Pardes, A.; Lynch, W.; Molaro, C.; Platt, M. L.

10.1101/745315 — neuroscience — Posted on 2019-08-24

748 Modelling functional human neuromuscular junctions in a differentially-perturbable microfluidic environment, validated through recombinant monosynaptic pseudotyped ΔG-rabies virus tracing

Bauer, U. S.; van de Wijdeven, R. F.; NAIR, R. R.; Fiskum, V.; Kentros, C.; Sandvig, I.; Sandvig, A.

10.1101/745513 — neuroscience — Posted on 2019-08-24

749 Guanidine hydrochloride reactivates an ancient septin hetero-oligomer assembly pathway in budding yeast

Johnson, C. R.; Steingesser, M. G.; Weems, A. D.; Khan, A.; Bertin, A.; Gladfelter, A.; McMurray, M. A.

10.1101/744722 — genetics — Posted on 2019-08-24

750 CellGPS: Whole-body tracking of single cells by positron emission tomography

Jung, K. O.; Kim, T. J.; Yu, J. H.; Rhee, S.; Zhao, W.; Ha, B.; Red-Horse, K.; Gambhir, S. S.; Pratx, G.

10.1101/745224 — bioengineering — Posted on 2019-08-24

751 A genomics approach reveals the global genetic polymorphism, structure and functional diversity of ten accessions of the marine model diatom Phaeodactylum tricornutum

Rastogi, A.; Rocha Jimenez Vieira, F.; Deton Cabanilas, A. F.; Veluchamy, A.; Cantrel, C.; Wang, G.; Vanormelingen, P.; Bowler, C.; Piganeau, G.; Hu, H.; TIRICHINE, L.

10.1101/176008 — genomics — Posted on 2019-08-24

752 MS Atlas - A molecular map of brain lesion stages in progressive multiple sclerosis

Frisch, T.; Elkjaer, M. L.; Reynolds, R.; Michel, T. M.; Kacprowski, T.; Burton, M.; Kruse, T. A.; Thomassen, M.; Baumbach, J.; Illes, Z.

10.1101/584920 — systems biology — Posted on 2019-08-24

753 Gut microbiome activity contributes to individual variation in glycemic response in adults

Tily, H.; Perlina, A.; Patridge, E.; Gline, S.; Genkin, M.; Gopu, V.; Lindau, H.; Sjue, A.; Slavov, I.; Klitgord, N.; Vuyisich, M.; Messier, H.; Banavar, G. S.

10.1101/641019 — systems biology — Posted on 2019-08-24

754 Revisiting the reduction of stochastic models of genetic feedback loops with fast promoter switching

Holehouse, J.; Grima, R.

10.1101/657718 — systems biology — Posted on 2019-08-24

755 Machine learning based detection of genetic and drug class variant impact on functionally conserved protein binding dynamics

Babbitt, G. A.; Fokoue, E. P.; Evans, J. R.; Diller, K. I.; Adams, L. E.

10.1101/724211 — biophysics — Posted on 2019-08-24

756 Distinct evolutionary trajectories of neuronal and hair cell nicotinic acetylcholine receptors

Marcovich, I.; Moglie, M. J.; Carpaneto Freixas, A. E.; Trigila, A.; Franchini, L. F.; Plazas, P. V.; Lipovsek, M.; Elgoyhen, A. B.

10.1101/621342 — neuroscience — Posted on 2019-08-24

757 Personalized and graph genomes reveal missing signal in epigenomic data

Groza, C.; Kwan, T.; Soranzo, N.; Pastinen, T.; Bourque, G.

10.1101/457101 — bioinformatics — Posted on 2019-08-24

758 Topography and Land Use Modulate Hydrological and Nutrient Export Dynamics in Andean Streams

Sosnovsky, A.; Lallement, M. E.; Rechencq, M.; Zattara, E. E.; Fernández, M. V.; Suárez, M. J.; Leiva, S.; Cantet, R. J.

10.1101/742411 — ecology — Posted on 2019-08-24

759 Compressed sensing for imaging transcriptomics

Cleary, B.; Murray, E.; Alam, S.; Sinha, A.; Habibi, E.; Simonton, B.; Bezney, J.; Marshall, J.; Lander, E. S.; Chen, F.; Regev, A.

10.1101/743039 — molecular biology — Posted on 2019-08-24

760 The relevance of dominance and functional annotations to predict agronomic traits in hybrid maize

Ramstein, G. P.; Larsson, S. J.; Cook, J. P.; Edwards, J.; Ersoz, E. S.; Flint-Garcia, S.; Gardner, C. A.; Holland, J. B.; Lorenz, A. J.; McMullen, M. D.; Millard, M. J.; Rocheford, T. R.; Tuinstra, M. R.; Bradbury, P.; Buckler, E. S.; Romay, M. C.

10.1101/745208 — genomics — Posted on 2019-08-24

761 Association between Drusen Burden Determined by OCT and Genetic Risk in Early and Intermediate Age-Related Macular Degeneration

Seddon, J. M.; Dossett, J.; Widjajahakim, R.; Rosner, B.

10.1101/743633 — genetics — Posted on 2019-08-24

762 Genetic analyses reveal population structure and recent decline in leopards (Panthera pardus fusca) across Indian subcontinent

Bhatt, S.; Biswas, S.; Karanth, K.; Pandav, B.; Mondol, S.

10.1101/746081 — genetics — Posted on 2019-08-24

763 Pathogenic impact of isoform switches in 1209 cancer samples covering 27 cancer types using an isoform-specific interaction network

Kahraman, A.; von Mering, C.

10.1101/742379 — cancer biology — Posted on 2019-08-24

764 Empathic contagious pain and consolation in laboratory rodents: species and sex differences

Du, R.; Luo, W.-J.; Geng, K.-W.; Li, C.-L.; Yu, Y.; Wei, N.; He, T.; Chen, J.

10.1101/745299 — animal behavior and cognition — Posted on 2019-08-24

765 Dynamic response of RNA editing to temperature in Grape by RNA deep-sequencing

Zhang, a.; jiang, x.; zhang, x.

10.1101/745364 — plant biology — Posted on 2019-08-24

766 Dual RNA-seq provides insight into the biology of the neglected intracellular human pathogen Orientia tsutsugamushi

Mika-Gospodorz, B.; Giengkam, S.; Westermann, A.; Wongsantichon, J.; Kion-Crosby, W. B.; Chuenklin, S.; Wang, L. C.; Sunyakumthorn, P.; Sobota, R.; Subbian, S.; Vogel, J.; Barquist, L.; Salje, J.

10.1101/743641 — microbiology — Posted on 2019-08-24

767 The Gut Microbiota composition of Feral and Tamworth Pigs determined using High-Throughput Culturomics and Metagenomics Reveals Compositional Variations When Compared to the Commercial Breeds

Fenske, G. J.; Ghimire, S.; Antony, L.; Christopher-Hennings, J.; Scaria, J.

10.1101/738278 — microbiology — Posted on 2019-08-24

768 Quantitative PCR (qPCR) vs culture-dependent detection to assess honey contamination by Paenibacillus larvae

Crudele, S.; Ricchiuti, L.; Ruberto, A.; Rossi, F.

10.1101/741801 — microbiology — Posted on 2019-08-24

769 Diffusion of DNA-binding species in the nucleus: A transient anomalous subdiffusion model

Saxton, M. J.

10.1101/742171 — biophysics — Posted on 2019-08-24

770 Chromosome-level genome reference of Venturia effusa, causative agent of pecan scab

Winter, D. J.; Charlton, N. D.; Krom, N.; Shiller, J. B.; Bock, C. H.; Cox, M. P.; Young, C. A.

10.1101/746198 — genomics — Posted on 2019-08-24

771 The Setaria viridis genome and diversity panel enables discovery of a novel domestication gene

Huang, P.; Mamidi, S.; Healey, A.; Grimwood, J.; Jenkins, J.; Barry, K.; Sreedasyam, A.; Shu, S.; Feldman, M.; Wu, J.; Yu, Y.; Chen, C.; Johnson, J.; Sakakibara, H.; Kiba, T.; Sakurai, T.; Rokhsar, D.; Baxter, I.; Schmutz, J.; Brutnell, T.; Kellogg, E. A.

10.1101/744557 — genomics — Posted on 2019-08-24

772 Prevalence and mutational determinants of high tumor mutation burden in breast cancer

Barroso-Sousa, R.; Jain, E.; Cohen, O.; Kim, D.; Buendia, J. B.; Winer, E. P.; Lin, N. U.; Tolaney, S. M.; Wagle, N.

10.1101/745265 — genomics — Posted on 2019-08-24

773 Keeping patient phenotypes and genotypes private while seeking disease diagnoses

Jagadeesh, K.; Wu, D.; Birgmeier, J.; Boneh, D.; Bejerano, G.

10.1101/746230 — genomics — Posted on 2019-08-24

774 Spatial variation in introgression along a toad hybrid zone in France

van Riemsdijk, I.; Arntzen, J. W.; Bucciarelli, G.; McCartney-Melstad, E.; Rafajlovic, M.; Scott, P. A.; Toffelmier, E.; H. Shaffer, B.; Wielstra, B.

10.1101/746073 — evolutionary biology — Posted on 2019-08-24

775 PGRMC1 phosphorylation status and cell plasticity 1: glucose metabolism, mitochondria, and mouse xenograft tumorigenesis

Thejer, B. M.; Adhikary, P. P.; Kaur, A.; Teakel, S. L.; Van Oosterum, A.; Seth, I.; Pajic, M.; Hannan, K. M.; Pavy, M.; Poh, P.; Jazayeri, J. A.; Zaw, T.; Pascovici, D.; Ludescher, M.; Pawlak, M.; Cassano, J. C.; Turnbull, L.; Jazayeri, M.; James, A. C.; Coorey, C. P.; Roberts, T. L.; Kinder, S. J.; Hannan, R. D.; Patrick, E.; Molloy, M. P.; New, E. J.; Fehm, T. N.; Neubauer, H.; Goldys, E. M.; Weston, L. A.; Cahill, M. A.

10.1101/737718 — cancer biology — Posted on 2019-08-24

776 Genomic variant identification methods alter Mycobacterium tuberculosis transmission inference

Walter, K. S.; Colijn, C.; Cohen, T.; Mathema, B.; Liu, Q.; Bowers, J. R.; Engelthaler, D. M.; Narechania, A.; Croda, J.; Andrews, J. R.

10.1101/733642 — genomics — Posted on 2019-08-24

777 Long-term in vivo imaging of Drosophila larvae

Kakanj, P.; Eming, S. A.; Partridge, L.; Leptin, M.

10.1101/744383 — cell biology — Posted on 2019-08-24

778 Hypusinated eIF5A is expressed in pancreas and spleen of individuals with type 1 and type 2 diabetes

Mastracci, T. L.; Colvin, S. C.; Padgett, L. R.; Mirmira, R. G.

10.1101/745919 — cell biology — Posted on 2019-08-24

779 Spectral and lifetime fluorescence unmixing via deep learning

Smith, J. T.; Ochoa, M.; Yan, P.; Intes, X.

10.1101/745216 — bioengineering — Posted on 2019-08-24

780 β11-12 linker isomerization governs Acid-sensing ion channel desensitization and recovery

Rook, M. L.; Williamson, A.; Lueck, J. D.; Musgaard, M.; Maclean, D. M.

10.1101/746271 — neuroscience — Posted on 2019-08-24

781 Cross-talks of glycosylphosphatidylinositol biosynthesis with glycosphingolipid biosynthesis and ER-associated degradation

Wang, Y.; Maeda, Y.; Liu, Y.; Takada, Y.; Ninomiya, A.; Hirata, T.; Fujita, M.; Murakami, Y.; Kinoshita, T.

10.1101/743914 — cell biology — Posted on 2019-08-24

782 Gender bias in research teams and the underrepresentation of women in science

Dakin, R.; Ryder, T. B.

10.1101/741694 — scientific communication and education — Posted on 2019-08-24

783 Tagging allows faithful tracing of expression and enhances biochemical detection of Ran Binding Protein 9 in vivo.

Soliman, S.; Stark, A. E.; Gardner, M.; Harshman, S. W.; Breece, C. C.; Amari, F.; Orlacchio, A.; Chen, M.; Tessari, A.; Martin, J. A.; Visone, R.; Freitas, M. A.; La Perle, K.; Palmieri, D.; COPPOLA, V.

10.1101/745174 — bioengineering — Posted on 2019-08-24

784 The CMU Array. A 3D Nano-Printed, Fully Customizable Ultra-High-Density Microelectrode Array

Saleh, M. S.; Ritchie, S.; Nicholas, M. A.; Bezbaruah, R.; Reddy, J. W.; Chamanzar, M.; Yttri, E. A.; Panat, R.

10.1101/742346 — neuroscience — Posted on 2019-08-23

785 Obesity and brain topological organization differences throughout the lifespan

10.1101/685081 — neuroscience — Posted on 2019-08-23

786 The rodent vaginal microbiome across the estrous cycle and the effect of genital nerve electrical stimulation

Levy, M.; Bassis, C. M.; Kennedy, E.; Yoest, K. E.; Becker, J. B.; Bell, J.; Berger, M. B.; Bruns, T. M.

10.1101/647545 — microbiology — Posted on 2019-08-23

787 The putative Gαq-inhibiting pepducin P4Pal10 distinctly modulates function of the Gαi-coupled receptors FPR2 and FFA2R in neutrophils

Holdfeldt, A.; Lind, S.; Dahlgren, C.; Forsman, H.

10.1101/745596 — immunology — Posted on 2019-08-23

788 Application of non-invasive low-intensity pulsed electric field with thermal cycling-hyperthermia for synergistically enhanced anticancer effect of chlorogenic acid on PANC-1 cells

Lu, C.-H.; Kuo, Y.-Y.; Lin, G.-B.; Chen, W.-T.; Chao, C.-Y.

10.1101/745562 — cancer biology — Posted on 2019-08-23

789 Mechanism of processive telomerase catalysis revealed by high-resolution optical tweezers

Patrick, E. M.; Slivka, J.; Payne, B.; Comstock, M. J.; Schmidt, J. C.

10.1101/700294 — biochemistry — Posted on 2019-08-23

790 25 years of propagation in suspension cell culture results in substantial alterations of the Arabidopsis thaliana genome

Pucker, B.; Rueckert, C.; Stracke, R.; Viehoever, P.; Kalinowski, J.; Weisshaar, B.

10.1101/710624 — genomics — Posted on 2019-08-23

791 Infect While the Iron is Scarce: Nutrient Explicit Phage-Bacteria Games

Muratore, D.; Weitz, J. S.

10.1101/674382 — ecology — Posted on 2019-08-23

792 A flexible quantitative phase imaging microscope for label-free imaging of thick biological specimens using aperture masks

Seniya, C.; Towers, C.; Towers, D.

10.1101/709121 — biophysics — Posted on 2019-08-23

793 Expansion of a fly TBI model to four levels of injury severity reveals synergistic effects of repetitive injury for moderate injury conditions

Putnam, L. J.; Willes, A. M.; Kalata, B. E.; Disher, N. D.; Brusich, D. J.

10.1101/611244 — neuroscience — Posted on 2019-08-23

794 Predicting transfer RNA gene activity from sequence and genome context

Thornlow, B.; Armstrong, J.; Holmes, A.; Corbett-Detig, R.; Lowe, T. M.

10.1101/661942 — genomics — Posted on 2019-08-23

795 Zygomorphic flowers have fewer visitors

Yoder, J. B.; Gomez, G.; Carlson, C. J.

10.1101/743872 — ecology — Posted on 2019-08-23

796 Microalgal pigments and their relation with phytoplankton carbon biomass on the northeastern Mediterranean Sea shore, with special emphasis on nanophytoplankton

Eker-Develi, E.; Konucu, M.; Örek, H.; Basduvar, S.

10.1101/745588 — ecology — Posted on 2019-08-23

797 Implicit temporal predictability enhances pitch discrimination sensitivity and biases the phase of delta oscillations in auditory cortex

Herbst, S. K.; Obleser, J.

10.1101/410274 — neuroscience — Posted on 2019-08-23

798 Protein-protein docking using learned three-dimensional representations

Derevyanko, G.; Lamoureux, G.

10.1101/738690 — bioinformatics — Posted on 2019-08-23

799 PROPERTIES OF A MULTIDIMENSIONAL LANDSCAPE MODEL FOR DETERMINING CELLULAR NETWORK THERMODYNAMICS

Hubbard, J. B.; Halter, M.; Plant, A. L.

10.1101/682690 — systems biology — Posted on 2019-08-23

800 Development and External Validation of the Acute COPD Exacerbation Prediction Tool (ACCEPT)

Adibi, A.; Sin, D. D.; Safari, A.; Johnson, K. M.; Aaron, S.; FitzGerald, J. M.; Sadatsafavi, M.

10.1101/651901 — epidemiology — Posted on 2019-08-23

801 mTORC1 IN THE ORBITOFRONTAL CORTEX PROMOTES HABITUAL ALCOHOL SEEKING

Morisot, N.; Phamluong, K.; Ehinger, Y.; Berger, A.; Moffat, J.; Ron, D.

10.1101/564310 — neuroscience — Posted on 2019-08-23

802 Bone-targeted lncRNA OGRU alleviates unloading-induced bone loss via miR-320-3p/Hoxa10 axis

Wang, K.; Wang, Y.; Hu, Z.; Shi, F.; Zhang, S.; Zhang, G.

10.1101/745430 — molecular biology — Posted on 2019-08-23

803 Machine learning based imputation techniques forestimating phylogenetic trees from incompletedistance matrices

Bhattacharjee, A.; Bayzid, M. S.

10.1101/744789 — genomics — Posted on 2019-08-23

804 Comparing alternative cholera vaccination strategies in Maela refugee camp using a transmission model

Havumaki, J.; Meza, R.; Phares, C. R.; Date, K.; Eisenberg, M. C.

10.1101/514406 — epidemiology — Posted on 2019-08-23

805 Statistical Analysis of Variability in TnSeq Data Across Conditions Using Zero-Inflated Negative Binomial Regression

Subramaniyam, S.; DeJesus, M. A.; Zaveri, A.; Smith, C. M.; Baker, R. E.; Ehrt, S.; Schnappinger, D.; Sassetti, C. M.; Ioerger, T. R.

10.1101/590281 — bioinformatics — Posted on 2019-08-23

806 Blood, sweat and tears: a review of non-invasive DNA sampling

Lefort, M.-C.; Cruickshank, R. H.; Descovich, K.; Adams, N. J.; Barun, A.; Emami-Khoyi, A.; Ridden, J.; Smith, V. R.; Sprague, R.; Waterhouse, B.; Boyer, S.

10.1101/385120 — ecology — Posted on 2019-08-23

807 Quantifying the Influence of Mutation Detection on Tumour Subclonal Reconstruction

Bhandari, V.; Liu, L. Y.; Salcedo, A.; Espiritu, S. M.; Morris, Q. D.; Boutros, P. C.

10.1101/418780 — cancer biology — Posted on 2019-08-23

808 Sleep deprivation selectively down-regulates astrocytic 5-HT2B receptors and triggers depressive-like behaviors via stimulating P2X7 receptors

Xia, M.; Li, S.; Liang, S.; Li, X.; Li, Z.; Verkhratsky, A.; Guan, D.; Li, B.

10.1101/745505 — neuroscience — Posted on 2019-08-23

809 A global map of orientation tuning in mouse visual cortex

Fahey, P. G.; Muhammad, T.; Smith, C.; Froudarakis, E.; Cobos, E.; Fu, J.; Walker, E. Y.; Yatsenko, D.; Sinz, F. H.; Reimer, J.; Tolias, A. S.

10.1101/745323 — neuroscience — Posted on 2019-08-23

810 PGRMC1 phosphorylation status and cell plasticity 2: genomic integrity and CpG methylation

Thejer, B. M.; Adhikary, P. P.; Teakel, S. L.; Fang, J.; Weston, P. A.; Gurusinghe, S.; Anwer, A. G.; Gosnell, M.; Jazayeri, J. A.; Ludescher, M.; Gray, L.-A.; Pawlak, M.; Wallace, R. H.; Pant, S. D.; Wong, M.; Fischer, T.; New, E. J.; Fehm, T. N.; Neubauer, H.; Goldys, E. M.; Quinn, J. C.; Weston, L. A.; Cahill, M. A.

10.1101/737783 — cell biology — Posted on 2019-08-23

811 Determining the serotype composition of mixed samples of pneumococcus using whole genome sequencing

Knight, J. R.; Dunne, E. M.; Mulholland, K.; Saha, S.; Satzke, C.; Tothpal, A.; Weinberger, D. M.

10.1101/741603 — bioinformatics — Posted on 2019-08-23

812 Senescence: Still an Unsolved Problem of Biology

Salguero-Gomez, D. R.; Capdevila, D. P.; Roper, M.

10.1101/739730 — evolutionary biology — Posted on 2019-08-23

813 Traction forces control cell-edge dynamics and mediate distance-sensitivity during cell polarization

Messi, Z.; Bornert, A.; Raynaud, F.; Verkhovsky, A.

10.1101/745687 — cell biology — Posted on 2019-08-23

814 Cell culture dimensionality influences mesenchymal stem cell fate through cadherin-2 and cadherin-11

Passanha, F. R.; Geuens, T.; Konig, S.; Blitterswijk, C. A. v.; LaPointe, V. L.

10.1101/744698 — cell biology — Posted on 2019-08-23

815 HYPERsol: flash-frozen results from archival FFPE tissue for clinical proteomics

Marchione, D. M.; Ilieva, I.; Garcia, B. A.; Pappin, D. J.; Wilson, J. P.; Wojcik, J. B.

10.1101/632315 — cancer biology — Posted on 2019-08-23

816 SPAligner: alignment of long diverged molecular sequences to assembly graphs

Dvorkina, T.; Antipov, D.; Korobeynikov, A.; Nurk, S.

10.1101/744755 — bioinformatics — Posted on 2019-08-23

817 Updated phylogeny of Chikungunya virus suggests lineage-specific RNA architecture

de Bernardi Schneider, A.; Ochsenreiter, R.; Hostager, R.; Hofacker, I. L.; Janies, D.; Wolfinger, M. T.

10.1101/698522 — bioinformatics — Posted on 2019-08-23

818 Scavenging of reactive dicarbonyls with 2-hydroxybenzylamine reduces atherosclerosis in hypercholesterolemic Ldlr-/- mice

Tao, H.; Huang, J.; Yancey, P. G.; Yermalitsky, V.; Ding, L.; Zhang, Y.; Blakemore, J. L.; Zagol-Ikapitte, I.; Amarnath, V.; Boutaud, O.; Oates, J. A.; Roberts, L. J.; Davies, S. S.; Linton, M. F.

10.1101/524884 — pharmacology and toxicology — Posted on 2019-08-23

819 The Paraventricular Thalamus is a Critical Mediator of Top-down Control of Cue-motivated Behavior in Rats

Campus, P.; Covelo, I. R.; Kim, Y.; Parsegian, A.; Kuhn, B.; Lopez, S. A.; Neumaier, J.; Ferguson, S.; Solberg Woods, L. C.; Sarter, M.; Flagel, S. B.

10.1101/637702 — neuroscience — Posted on 2019-08-23

820 Application of a novel force-field to manipulate the relationship between pelvis motion and step width in human walking

Heitkamp, L. N.; Stimpson, K. H.; Dean, J. C.

10.1101/636787 — bioengineering — Posted on 2019-08-23

821 A systemic approach provides insights into the salt stress adaptation mechanisms of contrasting bread wheat genotypes

Duarte-Delgado, D.; Dadshani, S.; Schoof, H.; Oyiga, B. C.; Schneider, M.; Mathew, B.; Leon, J.; Ballvora, A.

10.1101/741090 — systems biology — Posted on 2019-08-23

822 Desmin is a modifier of dystrophic muscle features in Mdx mice

Ferry, A.; Messeant, J.; Parlakian, A.; Lemaitre, M.; Roy, P.; Delacroix, C.; Lilienbaum, A.; Hovhannisyan, Y.; Furling, D.; Klein, A. F.; Li, Z.; Agbulut, O.

10.1101/742858 — pathology — Posted on 2019-08-23

823 Sex and APOE genotype influence AD neuropathology but not epigenetic age across diagnosis

Duarte-Guterman, P.; Inkster, A. M.; Barha, C. K.; Albert, A. Y.; Robinson, W.; Galea, L.

10.1101/741777 — neuroscience — Posted on 2019-08-23

824 HESC-derived sensory neurons reveal an unexpected role for PIEZO2 in nociceptor mechanotransduction

Siemens, J.; Schrenk-Siemens, K.; Pohle, J.; Rostock, C.; Abd El Hay, M.; Lam, R. M.; Szczot, M.; Lu, S.; Chesler, A.

10.1101/741660 — neuroscience — Posted on 2019-08-23

825 Phase-amplitude markers of synchrony and noise: A resting-state and TMS-EEG study of schizophrenia

Freche, D.; Naim-Feil, J.; Hess, S.; Peled, A.; Grinshpoon, A.; Moses, E.; Levit-Binnun, N.

10.1101/740621 — neuroscience — Posted on 2019-08-23

826 Activation of the liver X receptors alters CD4+ T cell membrane lipids and signalling through direct regulation of glycosphingolipid synthesis

Waddington, K. E.; Robinson, G. A.; Adriani, M.; Rubio Cuesta, B.; Chrifi-Alaoui, E.; Andreone, S.; Poon, K. S.; Ivanova, I.; Martin-Gutierrez, L.; Owen, D.; Nytrova, P.; Kubala Havrdova, E.; Farrell, R.; Jury, E. E.; Pineda-Torra, I.

10.1101/721050 — immunology — Posted on 2019-08-23

827 Shared Genetic Risk between Eating Disorder- and Substance-Use-Related Phenotypes: Evidence from Genome-Wide Association Studies

Munn-Chernoff, M.; Johnson, E. C.; Chou, Y.-L.; Coleman, J. R.; Thornton, L. M.; Walters, R. K.; Yilmaz, Z.; Baker, J.; Hubel, C.; Gordon, S.; Medland, S.; Watson, H.; Gaspar, H. A.; Bryois, J.; Hinney, A.; Leppa, V.; Mattheisen, M.; Ripke, S.; Yao, S.; Giusti-Rodriguez, P.; Hanscombe, K. B.; Adan, R.; Alredsson, L.; Ando, T.; Andreassen, O. A.; Berrettini, W.; Boehm, I.; Boni, C.; Boraska Perica, V.; Buehren, K.; Burghardt, R.; Cassina, M.; Cichon, S.; Clementi, M.; Cone, R.; Courtet, P.; Crow, S.; Crowley, J. J.; Danner, U.; Davis, O.; de Zwaan, M.; Dedoussis, G.; Degortes, D.; DeSocio, J.;

10.1101/741512 — genetics — Posted on 2019-08-23

828 Replicated anthropogenic hybridisations reveal parallel patterns of admixture in marine mussels.

Simon, A.; Arbiol, C.; Nielsen, E. E.; Couteau, J.; Sussarellu, R.; Burgeot, T.; Bernard, I.; Coolen, J. W. P.; Lamy, J.-B.; Robert, S.; Skazina, M.; Strelkov, P.; Queiroga, H.; Cancio, I.; Welch, J. J.; Viard, F.; Bierne, N.

10.1101/590737 — evolutionary biology — Posted on 2019-08-23

829 Characters of neoantigens in cancer immunotherapy

Bai, P.; Li, Y.; Zhou, Q.; Xia, J.; Wu, M.; Deng, H.; Kappler, J. W.; Marrack, P.; Zhou, Y.; Yin, L.

10.1101/700732 — cancer biology — Posted on 2019-08-23

830 Systemic Commitments of the Context-Dependency; Basics of Elementary Coordination in Circadian Cycles

Park, C.

10.1101/738872 — systems biology — Posted on 2019-08-23

831 Crowding Reveals Fundamental Differences in Local vs. Global Processing in Humans and Machines

Doerig, A.; Bornet, A.; Choung, O. H.; Herzog, M. H.

10.1101/744268 — neuroscience — Posted on 2019-08-23

832 BOLD and EEG signal variability at rest differently relate to aging in the human brain

Kumral, D.; Sansal, F.; Cesnaite, E.; Mahjoory, K.; Al, E.; Gaebler, M.; Nikulin, V. V.; Villringer, A.

10.1101/646273 — neuroscience — Posted on 2019-08-23

833 Vaccination strategies to control Ebola epidemics in the context of variable household inaccessibility levels

Chowell, G.; Tariq, A.; Kiskowski, M.

10.1101/665646 — epidemiology — Posted on 2019-08-23

834 Phosphorylation of mitochondrial matrix proteins regulates their selective mitophagic degradation

Kolitsida, P.; Zhou, J.; Rackiewicz, M.; Nolic, V.; Dengjel, J.; Abeliovich, H.

10.1101/513135 — cell biology — Posted on 2019-08-23

835 Structural-stability studies on recombinant human transferrin

Kulakova, A.; Indrakumar, S.; Sonderby, P.; Gentiluomo, L.; Streicher, W.; Roessner, D.; Frieb, W.; Peters, G. H.; Harris, P.

10.1101/742957 — biophysics — Posted on 2019-08-23

836 Immunotherapy prevents long-term disability in relapsing multiple sclerosis over 15 years

Kalincik, T.; Sharmin, S.; Malpas, C.; Spelman, T.; Horakova, D.; Havrdova, E. K.; Trojano, M.; Izquierdo, G.; Lugaresi, A.; Prat, A.; Girard, M.; Duquette, P.; Grammond, P.; Jokubaitis, V.; van der Walt, A.; Grand'Maison, F.; Sola, P.; Ferraro, D.; Shaygannejad, V.; Alroughani, R.; Hupperts, R.; Terzi, M.; Boz, C.; Lechner-Scott, J.; Pucci, E.; Van Pesch, V.; Granella, F.; Bergamaschi, R.; Spitaleri, D.; Slee, M.; Vucic, S.; Ampapa, R.; McCombe, P.; Ramo-Tello, C.; Prevost, J.; Olascoaga, J.; Cristiano, E.; Barnett, M.; Saladino, M. L.; Sanchez-Menoyo, J. L.; Hodgkinson, S.; Rozsa, C.; Hughe

10.1101/735662 — neuroscience — Posted on 2019-08-23

837 Comparative genomics analyses indicate differential methylated amine utilisation trait within the member of the genus Gemmobacter

Krober, E.; Peixoto, J.; Cunningham, M.; Spurgin, L.; Wischer, D.; Kruger, R.; Kumaresan, D.

10.1101/356014 — microbiology — Posted on 2019-08-23

838 Cytoplasmic mRNA decay factors modulate RNA polymerase II processivity in 5’ and 3’ gene regions in yeast

Fischer, J.; Song, Y. S.; Yosef, N.; di Iulio, J.; Churchman, L. S.; Choder, M.

10.1101/741058 — genomics — Posted on 2019-08-23

839 Deubiquitination of phosphoribosyl-ubiquitin conjugates by PDE domain-containing Legionella effectors

Wan, M.; Sulpizio, A.; Akturk, A.; Beck, W. H. J.; Lanz, M.; Faca, V. M.; Smolka, M. B.; Vogel, J. P.; Mao, Y.

10.1101/745331 — biochemistry — Posted on 2019-08-23

840 Pharmacological inhibition of the heart of glass (HEG1)-Krev interaction trapped protein 1 (KRIT1) protein complex increases Kruppel-like Factors 4 and 2 (KLF4/2) expression in endothelial cells

Lopez-Ramirez, M. A.; Haynes, M. K.; Hale, P.; Oukoloff, K.; Bautista, M.; Gongol, B.; Shyy, J. Y.; Ballatore, C.; Sklar, L. A.; Gingras, A. R.

10.1101/744821 — biochemistry — Posted on 2019-08-23

841 Descent of Bacteria and Eukarya from an archaeal root of life

Long, X.; Xue, H.; Wong, J. T.-F.

10.1101/745372 — evolutionary biology — Posted on 2019-08-23

842 Cell-derived plasma membrane vesicles are permeable to hydrophilic macromolecules

Skinkle, A. D.; Levental, I.

10.1101/731364 — biophysics — Posted on 2019-08-23

843 A low-cost and easy-to-use cell preservation reagent for 4{ring}C or room temperature sample storage

Shankar, S.; Roy, S.; Geary-Teeter, A.; Martin, G. M.; Ladd, P. D.

10.1101/745232 — pathology — Posted on 2019-08-23

844 A Multidimensional Systems Biology Analysis of Cellular Senescence in Ageing and Disease

Avelar, R. A.; Ortega, J. G.; Tacutu, R.; Tyler, E.; Bennett, D.; Binetti, P.; Budovsky, A.; Chatsirisupachai, K.; Johnson, E.; Murray, A.; Shields, S.; Tejada-Martinez, D.; Thornton, D.; Fraifeld, V. E.; Bishop, C.; de Magalhaes, J. P.

10.1101/743781 — systems biology — Posted on 2019-08-23

845 Intrinsically ball retrieving wolf puppies reveal standing ancestral variation for human-directed play behaviour

Hansen Wheat, C.; Temrin, H.

10.1101/744862 — evolutionary biology — Posted on 2019-08-23

846 A single cell transcriptome atlas of the developing zebrafish hindbrain

Tambalo, M.; Mitter, R.; Wilkinson, D.

10.1101/745141 — developmental biology — Posted on 2019-08-23

847 Software for agriculture climate risk management focused in smallholders

Coltri, P. P.; Pinto, H. S.; Medeiros, Y. O.; Hashimoto, K. S.; Di Blasio, G. C.; Alfonsi, E. L.; Goncalves, R. R. d. V.; Alfonsi, W. M.

10.1101/745109 — bioinformatics — Posted on 2019-08-23

848 One-time learning in a biologically-inspired Salience-affected Artificial Neural Network (SANN)

Remmelzwaal, L. A.; Ellis, G. F. R.; Tapson, J.

10.1101/726331 — neuroscience — Posted on 2019-08-23

849 Ctf4 organizes sister replisomes and Pol alpha into a replication factory

Yuan, Z.; Georgescu, R.; Almeida Santos, R. d. L.; Zhang, D.; Bai, L.; Yao, N. Y.; Zhao, G.; O'Donnell, M. E.; Li, H.

10.1101/735746 — biochemistry — Posted on 2019-08-23

850 Evidence for influenza B virus hemagglutinin adaptation to the human host: high cleavability, acid-stability and preference for cool temperature

Laporte, M.; Stevaert, A.; Raeymaekers, V.; Boogaerts, T.; Nehlmeier, I.; Chiu, W.; Benkheil, M.; Vanaudenaerde, B.; Pöhlmann, S.; Naesens, L. M.

10.1101/736678 — microbiology — Posted on 2019-08-23

851 A Fast and Memory-Efficient Implementation of the Transfer Bootstrap

Lutteropp, S.; Kozlov, A. M.; Stamatakis, A.

10.1101/734848 — bioinformatics — Posted on 2019-08-23

852 Altered functional interactions between neurons in primary visual cortex of macaque monkeys with experimental amblyopia

Acar, K.; Kiorpes, L.; Movshon, J. A.; Smith, M. A.

10.1101/604009 — neuroscience — Posted on 2019-08-23

853 Ketamine disinhibits dendrites and enhances calcium signals in prefrontal dendritic spines

Ali, F.; Gerhard, D. M.; Sweasy, K.; Pothula, S.; Pittenger, C.; Duman, R. S.; Kwan, A. C.

10.1101/659292 — neuroscience — Posted on 2019-08-23

854 Visual body form and orientation cues do not modulate visuo-tactile temporal integration

Smit, S.; Rich, A. N.; Zopf, R.

10.1101/647594 — neuroscience — Posted on 2019-08-23

855 Genome sequence and comparative analysis of reindeer (Rangifer tarandus) in northern Eurasia

Weldenegodguad, M.; Pokharel, K.; Ming, Y.; Honkatukia, M.; Peippo, J.; Reilas, T.; Roed, K. H.; Kantanen, J.

10.1101/739995 — genomics — Posted on 2019-08-23

856 The nuclear receptor NR4A1 is regulated by SUMO modification to induce autophagic cell death

Castro-Obregon, S.; Zarraga, G.; Mucino-Hernandez, G.; Sanchez-Carbente, M. R.; Villamizar-Galvez, W.; Penas-Rincon, A.; Arredondo, C.; Andres, M. E.; Wood, C.; Covarrubias, L.

10.1101/745026 — biochemistry — Posted on 2019-08-22

857 The effect of blue-blocking lenses on photostress recovery times for low and high contrast chromatic and achromatic stimuli

Alzahrani, H. S.; Khuu, S. K.; Ali, A.; Roy, M.

10.1101/745000 — physiology — Posted on 2019-08-22

858 A novel machine learning based approach for iPS progenitor cell identification

Zhang, H.; Shao, X.; Peng, Y.; Teng, Y.; Saravanan, K. M.; Zhang, H.; Wei, Y.; Li, H.

10.1101/744920 — bioinformatics — Posted on 2019-08-22

859 Structural distortions induced by Kinase Inhibiting RNase Attenuator (KIRA) compounds prevent the formation of face-to-face dimers of Inositol Requiring Enzyme 1α

Carlesso, A.; Chintha, C.; Gorman, A. M.; Samali, A.; Eriksson, L. A.

10.1101/744904 — biochemistry — Posted on 2019-08-22

860 ADC mapping with 12 b values: an improved technique for image quality in diffusion prostate MRI

Saad, L. S.; Rosas, G. D. Q.; Melo, H. J. d. F.; Gabriele, H. A.; Szejnfeld, J.

10.1101/744961 — scientific communication and education — Posted on 2019-08-22

861 Trueness of digital intraoral impression in reproducing multiple implant position

Kim, R. J.-Y.; Benic, G. I.; Park, J.-M.

10.1101/744995 — scientific communication and education — Posted on 2019-08-22

862 Evaluation of eight protocols for genomic DNA extraction of Hypostomus commersoni (Valenciennes, 1836), Siluriformes: Loricariidae.

Mezzomo, P.; Mielniczki-Pereira, A. A.; Sausen, T. L.; Reppold Marinho, J.; Cansian, R. L.

10.1101/744946 — genetics — Posted on 2019-08-22

863 Crumbs 2 mediates ventricular layer remodelling to form the adult spinal cord central canal

Tait, C.; Chinnaiya, K.; Murtaza, M.; Ashton, J.-P.; Furley, N.; Hill, C.; Alves, H.; Wijnholds, J.; Erdmann, K.; Das, R.; Rashbass, P.; Storey, K.; Placzek, M.

10.1101/744888 — developmental biology — Posted on 2019-08-22

864 Ligand-induced Conformational Selection Predicts the Selectivity of Cysteine Protease Inhibitors

Sartori, G. R.; Leitao, A.; Montanari, C.; Laughton, C. A.

10.1101/744953 — bioinformatics — Posted on 2019-08-22

865 Open source computational simulation for a moth-inspired navigation algorithm

Benelli, N.; Gurka, R.; Golov, Y.; Harari, A.; Zilman, G.; Liberzon, A.

10.1101/744912 — animal behavior and cognition — Posted on 2019-08-22

866 Differentiation of Human Colon Tissue In Culture: Effects of calcium on trans-epithelial electrical resistance and tissue cohesive properties

McClintock, S. D.; Dame, M. K.; Richter, A.; Attili, D.; Silvestri, S. S.; Berner, M. M.; Bohm, M. S.; Karpoff, K.; McCarthy, C.; Spence, J. R.; Varani, J.; Aslam, M. N.

10.1101/744979 — physiology — Posted on 2019-08-22

867 Repeated noninvasive stimulation of the ventromedial prefrontal cortex reveals cumulative amplification of pleasant compared to unpleasant scene processing: a single subject pilot study

Winker, C.; Rehbein, M. A.; Sabatinelli, D.; Junghoefer, M.

10.1101/744987 — neuroscience — Posted on 2019-08-22

868 Transcription-induced formation of extrachromosomal DNA during yeast ageing

Hull, R.; King, M.; Pizza, G.; Krueger, F.; Vergara, X.; Houseley, J.

10.1101/744896 — molecular biology — Posted on 2019-08-22

869 Intestinal parasitosis, anaemia and risk factors among preschool children in Tigray Region, Northern Ethiopia.

Wasihun, A. G.; Teferi, M.; Negash, L.; Marugan, J.; Yemane, D.; McGuigan, K. G.; Conroy, R. M.; Abebe, H. T.; Asmelash, T.; Javier Marugan, Kevin G. McGuigan, Ronan M. Conroy,

10.1101/744938 — microbiology — Posted on 2019-08-22

870 Haploinsufficient maternal effect of Epidermal Growth Factor Receptor A mutation in zebrafish

Hughes, S. M.; Ciano, M.; Kemp, P. R.; Sathyapala, S. A.

10.1101/745018 — genetics — Posted on 2019-08-22

871 Spatial and temporal partitioning and tree preference in California woodland ants

MacArthur-Waltz, D.; Nelson, R.; Lee, G.; Gordon, D.

10.1101/745034 — ecology — Posted on 2019-08-22

872 Photocontrol of endogenous glycine receptors in vivo

Gomila, A. M. J.; Rustler, K.; Maleeva, G.; Nin-Hill, A.; Wutz, D.; Bautista-Barrufet, A.; Rovira, X.; Bosch, M.; Mukhametova, E.; Mukhamedyarov, M.; Peiretti, F.; Alfonso-Prieto, M.; Rovira, C.; Konig, B.; Bregestovski, P.; Gorostiza, P.

10.1101/744391 — neuroscience — Posted on 2019-08-22

873 Single-cell molecular and cellular architecture of neurohypophyseal cell types in the adult mouse

Chen, Q.; Leshkowitz, D.; Blechman, J.; Levkowitz, G.

10.1101/744466 — neuroscience — Posted on 2019-08-22

874 Strain-level differences in gut microbiome composition determine fecal IgA levels and are modifiable by gut microbiota manipulation

Yang, C.; Mogno, I.; Contijoch, E. J.; Borgerding, J. N.; Aggarwala, V.; Siu, S. Y.; Li, Z.; Grasset, E. K.; Helmus, D. S.; Dubinsky, M. C.; Mehandru, S.; Cerutti, A.; Faith, J. J.

10.1101/544015 — immunology — Posted on 2019-08-22

875 Robust Hi-C chromatin loop maps in human neurogenesis and brain tissues at high-resolution

LU, L.; Liu, X.; Huang, W.-K.; Giusti-Rodriguez, P.; Cui, J.; Zhang, S.; Xu, W.; Wen, Z.; Ma, S.; Rosen, J. D.; Xu, Z.; Bartels, C.; Riki Kawaguchi, R.; Hu, M.; Scacheri, P.; Rong, Z.; Li, Y.; Sullivan, P. F.; Song, H.; Ming, G.-l.; Li, Y.; Jin, F.

10.1101/744540 — genomics — Posted on 2019-08-22

876 89Zr-oxine labelling and PET imaging shows lung delivery of a cell/gene cancer therapy

Patrick, P. S.; Kolluri, K. K.; Zaw Thin, M.; Edwards, A.; Sage, E. K.; Sanderson, T.; Weil, B. D.; Dickson, J. C.; Lythgoe, M. F.; Lowdell, M.; Janes, S. M.; Kalber, T. L.

10.1101/736967 — cell biology — Posted on 2019-08-22

877 Using ATR-FTIR spectroscopy to characterise crude heparin samples by composition and structural features.

Devlin, A. J.; Mauri, L.; Guerrini, M.; Yates, E. A.; Skidmore, M. A.

10.1101/744532 — biochemistry — Posted on 2019-08-22

878 The domain-general multiple demand (MD) network does not support core aspects of language comprehension: a large-scale fMRI investigation

Diachek, E.; Blank, I. A.; Siegelman, M.; Fedorenko, E.

10.1101/744094 — neuroscience — Posted on 2019-08-22

879 Comprehensive longitudinal study of epigenetic mutations in aging

Wang, Y.; Karlsson, R.; Jylhävä, J.; Hedman, A. K.; Almqvist, C.; Karlsson, I. K.; Pedersen, N. L.; Hägg, S.

10.1101/744250 — genetics — Posted on 2019-08-22

880 Clarifying species dependence under joint speciesdistribution modeling

Gelfand, A. E.; Shirota, S.

10.1101/744359 — ecology — Posted on 2019-08-22

881 NRP2 as an emerging angiogenic player; promoting endothelial cell adhesion and migration by regulating recycling of α5 integrin.

Alghamdi, A. A.; Benwell, C. J.; Atkinson, S. J.; Lambert, J.; Robinson, S. D.

10.1101/744763 — cell biology — Posted on 2019-08-22

882 Complex+: Aided Decision-Making for the Study of Protein Complexes

Oghbaie, M.; Sulc, P.; Fenyo, D.; Pennock, M.; LaCava, J.

10.1101/744656 — bioinformatics — Posted on 2019-08-22

883 Performance evaluation of a new custom, multi-component DNA isolation method optimized for use in shotgun metagenomic sequencing-based aerosol microbiome research

Boeifot, K. O.; Gohli, J.; Moen, L. V.; Dybwad, M.

10.1101/744334 — molecular biology — Posted on 2019-08-22

884 Tri-4C: efficient identification of cis-regulatory loops at hundred base pair resolution

Zhu, Y.; Suh, Y.

10.1101/743005 — genetics — Posted on 2019-08-22

885 In-silico Optimisation of Mass Spectrometry Fragmentation Strategies in Metabolomics

Wandy, J.; Davies, V.; van der Hooft, J. J. J.; Weidt, S.; Daly, R.; Rogers, S.

10.1101/744227 — bioinformatics — Posted on 2019-08-22

886 Neocortical activity tracks syllable and phrasal structure of self-produced speech

Bourguignon, M.; Molinaro, N.; Lizarazu, M.; Taulu, S.; Jousmaki, V.; Lallier, M.; Carreiras, M.; De Tiege, X.

10.1101/744151 — neuroscience — Posted on 2019-08-22

887 CD4+ T follicular helper (Tfh) cells in human tonsil and blood are clonally convergent, but divergent from non-Tfh CD4+ cells

Brenna, E.; Davydov, A. N.; Ladell, K.; McLaren, J. E.; Bonaiuti, P.; Metsger, M.; Gilbert, S. C.; Lambe, T.; Price, D. A.; Campion, S. L.; Chudakov, D. M.; Borrow, P.; McMichael, A. J.

10.1101/743187 — immunology — Posted on 2019-08-22

888 Tracking the global supply chain of herbal medicines with novel genomic DNA barcodes

Manzanilla, V.; Teixidor Toneu, I.; Martin, G.; Hollingsworth, P.; de Boer, H. J.; Kool, A.

10.1101/744318 — genetics — Posted on 2019-08-22

889 Modelling the niches of wild and domesticated Ungulatespecies using deep learning

Rademaker, M.; Hogeweg, L.; Vos, R.

10.1101/744441 — evolutionary biology — Posted on 2019-08-22

890 Population genomics of Vibrionaceae isolated from an endangered oasis reveals local adaptation after an environmental perturbation.

Vazquez-Rosas-Landa, M.; Ponce-Soto, G. Y.; Aguirre-Liguori, J.; Thakur, S.; Scheinvar, E.; Barrera-Redondo, J.; Ibarra-Laclette, E.; Guttman, D.; Eguiarte, L.; Souza, V.

10.1101/743146 — evolutionary biology — Posted on 2019-08-22

891 Low Affinity Binding Sites in an Activating CRM Mediate Negative Autoregulation of the Drosophila Hox Gene Ultrabithorax

Delker, R. K.; Ranade, V.; Loker, R.; Voutev, R.; Mann, R. S.

10.1101/744631 — developmental biology — Posted on 2019-08-22

892 MCL-1 inhibition by selective BH3 mimetics disrupts mitochondrial dynamics in iPSC-derived cardiomyocytes

Rasmussen, M. L.; Taneja, N.; Neininger, A. C.; Wang, L.; Shi, L.; Knollmann, B. C.; Burnette, D. T.; Gama, V.

10.1101/743922 — cell biology — Posted on 2019-08-22

893 In vivo sequestration of innate small molecules to promote bone healing

Zeng, Y.; Shih, Y.-R.; Baht, G.; Varghese, S.

10.1101/745166 — bioengineering — Posted on 2019-08-22

894 Failure to clear developmental apoptosis contributes to the pathology of RNASET2-deficient leukoencephalopathy.

Hamilton, N.; Rutherford, H. A.; Isles, H. M.; Petts, J. J.; Henneke, M.; Gaertner, J.; Dunning, M.; Renshaw, S. A.

10.1101/744144 — neuroscience — Posted on 2019-08-22

895 Reorganization and reactivation of a preexisting taste-responsive hippocampal network

Herzog, L. E.; Katz, D. B.; Jadhav, S. P.

10.1101/744714 — neuroscience — Posted on 2019-08-22

896 Mitochondrial DNA variation of Leber’s Hereditary Optic Neuropathy (LHON) in Western Siberia

Starikovskaya, E. B.; Shalaurova, S. A.; Dryomov, S. V.; Nazhmidenova, A. M.; Volodko, N. V.; Bychkov, I. Y.; Mazunin, I. O.; Sukernik, R. I.

10.1101/744219 — molecular biology — Posted on 2019-08-22

897 Energy flux controls tetraether lipid cyclization in Sulfolobus acidocaldarius

Zhou, A.; Chiu, B.; Weber, Y.; Elling, F.; Cobban, A.; Pearson, A.; Leavitt, W.

10.1101/744623 — microbiology — Posted on 2019-08-22

898 Convergent genomic signatures of high altitude adaptation among domestic mammals

Wu, D.-D.; Yang, C.-P.; Wang, M.-S.; Dong, K.-Z.; Yan, D.-W.; Hao, Z.; Fan, S.-Q.; Chu, S.-Z.; Shen, Q.-S.; Jiang, L.-P.; Li, Y.; Zeng, L.; Liu, H.; Xie, H.-B.; Ma, Y.-F.; Kong, X.; Yang, S.; Dong, X.-X.; Koshkoiyeh, A. E.; Irwin, D. M.; Xiao, X.; Li, M.; Yang, D.; Wang, W.; Shi, P.; Li, H.; Ma, Y.-H.; Gou, X.; Chen, Y.-B.; Zhang, Y.-p.

10.1101/743955 — evolutionary biology — Posted on 2019-08-22

899 The impact of local adaptation and biological invasion on the geographical distribution of Aedes aegypti in Panama

Bennett, K. L.; McMillian, W. O.; Loaiza, J. R.

10.1101/744607 — evolutionary biology — Posted on 2019-08-22

900 OPTN translocates to an ATG9A-positive compartment to regulate innate immune signalling and cytokine secretion

O'Loughlin, T.; Kruppa, A. J.; Ribeiro, A. L.; Edgar, J. R.; Ghannam, A.; Smith, A. M.; Buss, F.

10.1101/744672 — cell biology — Posted on 2019-08-22

901 LINE-1 ORF2P EXPRESSION IS NEARLY IMPERCEPTIBLE IN HUMAN CANCERS

Ardeljan, D.; Wang, X.; Oghbaie, M.; Taylor, M. S.; Husband, D.; Deshpande, V.; Steranka, J. P.; Gorbounov, M.; Yang, W. R.; Sie, B.; Larman, H. B.; Jiang, H.; Molloy, K. R.; Altukhov, I.; Li, Z.; McKerrow, W.; Fenyo, D.; Burns, K. H.; LaCava, J.

10.1101/744425 — cancer biology — Posted on 2019-08-22

902 A flexible quantitative phase imaging microscope for label-free imaging of thick biological specimens using aperture masks

Seniya, D. C.; Towers, C.; Towers, D.

10.1101/709121 — biophysics — Posted on 2019-08-22

903 Visual perception of surprising materials in dynamic scenes

Alley, L. M.; Schmid, A. C.; Doerschner, K.

10.1101/744458 — neuroscience — Posted on 2019-08-22

904 GABA levels in ventral visual cortex decline with age and are associated with neural distinctiveness

Chamberlain, J. D.; Gagnon, H.; Lalwani, P.; Cassady, K. E.; Simmonite, M.; Foerster, B. R.; Petrou, M.; Seidler, R. D.; Taylor, S. F.; Weissman, D. H.; Park, D. C.; Polk, T. A.

10.1101/743674 — neuroscience — Posted on 2019-08-22

905 Two separate roles for the transcription coactivator SAGA and a set of genes redundantly regulated by TFIID and SAGA

Donczew, R.; Warfield, L.; Erijman, A.; Hahn, S.

10.1101/745059 — molecular biology — Posted on 2019-08-22

906 Use of polygenic risk scores and other molecular markers to enhance cardiovascular risk prediction: Prospective cohort study and modelling analysis

Sun, L.; Pennells, L.; Kaptoge, S.; Nelson, C. P.; Abraham, G.; Arnold, M.; Bell, S.; Bolton, T.; Burgess, S.; Dudbridge, F.; Guo, Q.; Ritchie, S. C.; Sofianopoulou, E.; Stevens, D.; Thompson, J. R.; Butterworth, A. S.; Wood, A.; Danesh, J.; Samani, N. J.; Inouye, M.; Di Angelantonio, E.

10.1101/744565 — genomics — Posted on 2019-08-22

907 Phenome-wide and Genome-wide Analyses of Quality of Life in Schizophrenia

Pazoki, R.; Lin, B. D.; R. van Eijk, K.; Schijven, D.; Guloksuz, S.; Luykx, J. J.

10.1101/744045 — genetics — Posted on 2019-08-22

908 Deep Learning Strategies for Differential Expansion Microscopy

Gatti, D. L.; Arslanturk, S.; Lal, S.; Jena, B. P.

10.1101/743682 — cell biology — Posted on 2019-08-22

909 Multiple Myeloma DREAM Challenge Reveals Epigenetic Regulator PHF19 As Marker of Aggressive Disease

Mason, M. J.; Schinke, C.; Eng, C.; Towfic, F.; Gruber, F.; Dervan, A.; White, B. S.; Pratapa, A.; Guan, Y.; Chen, H.; Cui, Y.; Li, B.; Yu, T.; Chaibub Neto, E.; Mavrommatis, K.; Ortiz, M.; Lyzogubov, V.; Bisht, K.; Dai, H. Y.; Schmitz, F.; Flynt, E.; Rozelle, D.; Danziger, S. A.; Ratushny, A.; Dalton, W. S.; Goldschmidt, H.; Avet-Loiseau, H.; Samur, M.; Hayete, B.; Sonneveld, P.; Shain, K. H.; Munshi, N.; Auclair, D.; Hose, D.; Morgan, G.; Trotter, M.; Bassett, D.; Goeke, J.; Walker, B. A.; Thakurta, A.; Guinney, J. A.

10.1101/737122 — cancer biology — Posted on 2019-08-22

910 Mechanical Feedback and Robustness of Apical Constrictions in Drosophila Embryo Ventral Furrow Formation

Holcomb, M. C.; Gao, G.-J. J.; Servati, M.; Schneider, D.; McNeely, P. K.; Thomas, J. H.; Blawzdziewicz, J.

10.1101/743609 — biophysics — Posted on 2019-08-22

911 DeepMF: Deciphering the Latent Patterns in Omics Profiles with a Deep Learning Method

Chen, L.; Xu, J.; Li, S. C.

10.1101/744706 — bioinformatics — Posted on 2019-08-22

912 Multiple protein-DNA interfaces unravelled by evolutionary information, physico-chemical and geometrical properties

Corsi, F.; Lavery, R.; Laine, E.; Carbone, A.

10.1101/743617 — bioinformatics — Posted on 2019-08-22

913 Comparison of solitary and collective foraging strategies of Caenorhabditis elegans in patchy food distributions

Ding, S. S.; Muhle, L. S.; Brown, A. E. X.; Schumacher, L. J.; Endres, R.

10.1101/744649 — animal behavior and cognition — Posted on 2019-08-22

914 Investigating and Assessing the Dermoepidermal Junction with Multiphoton Microscopy and Deep Learning

Huttunen, M. J.; Hristu, R.; Dumitru, A.; Costache, M.; Stanciu, S. G.

10.1101/743054 — pathology — Posted on 2019-08-22

915 Modeling the relationship between estimated foliar fungicide use and soybean yield losses due to foliar fungal diseases in the United States

Bandara, A. Y.; Weerasooriya, D. K.; Conley, S. P.; Bradley, C. A.; Allen, T. W.; Esker, P. D.

10.1101/744581 — pathology — Posted on 2019-08-22

916 Antibody-induced crosslinking immobilizes acetylcholine receptors. Mobile receptors exhibit anomalous, cholesterol-sensitive diffusion and clustering.

Mosqueira, A.; Camino, P. A.; Barrantes, F. J.

10.1101/744664 — biophysics — Posted on 2019-08-22

917 Multiple overlapping hypothalamus-brainstem circuits drive rapid threat avoidance

Lovett-Barron, M.; Chen, R.; Bradbury, S.; Andalman, A. S.; Wagle, M.; Guo, S.; Deisseroth, K.

10.1101/745075 — neuroscience — Posted on 2019-08-22

918 Machine learning based imputation techniques forestimating phylogenetic trees from incompletedistance matrices

Bhattacharjee, A.; Bayzid, M. S.

10.1101/744789 — genomics — Posted on 2019-08-22

919 Interdimer zipping in the chemoreceptor signaling domain revealed by molecular dynamics simulations

Petukh, M. G.; Ortega, D. R.; Baudry, J.; Zhulin, I. B.

10.1101/745117 — biophysics — Posted on 2019-08-22

920 Beyond accuracy: Measures for assessing machine learning models, pitfalls and guidelines

Dinga, R.; Penninx, B. W. J. H.; Veltman, D. J.; Schmaal, L.; Marquand, A. F.

10.1101/743138 — neuroscience — Posted on 2019-08-22

921 Cellular and molecular mechanisms of photoreceptor tuning for prey capture in larval zebrafish

Yoshimatsu, T.; Schroeder, C.; Berens, P.; Baden, T.

10.1101/744615 — neuroscience — Posted on 2019-08-22

922 An uncertainty principle for neural coding: Conjugate representations of position and velocity are mapped onto firing rates and co-firing rates of neural spike trains

Grgurich, R.; Blair, H. T.

10.1101/743310 — neuroscience — Posted on 2019-08-22

923 Sirt3 mediated by lentiviral vectors in the periaqueductal gray suppresses morphine withdrawal in rats: A preliminary study

Liu, S.; Yi, H.; GU, J.; Ikegami, D.; Hayashi, K.; Hao, S.

10.1101/743062 — neuroscience — Posted on 2019-08-22

924 Regionalized tissue fluidization by an actomyosin cable is required for epithelial gap closure during insect gastrulation

Jain, A.; Ulman, V.; Mukherjee, A.; Prakash, M.; Pimpale, L.; Münster, S.; Panfilio, K. A.; Jug, F.; Grill, S. W.; Tomancak, P.; Pavlopoulos, A.

10.1101/744193 — developmental biology — Posted on 2019-08-22

925 Mapping effective connectivity between the frontal and contralateral primary motor cortex using dual-coil transcranial magnetic stimulation

Bunday, K. L.; Betti, S.; Bonaiuto, J.; Orban, G. A.; Davare, M.

10.1101/743351 — neuroscience — Posted on 2019-08-22

926 SCDC: Bulk Gene Expression Deconvolution by Multiple Single-Cell RNA Sequencing References

Dong, M.; Thennavan, A.; Urrutia, E.; Li, Y.; Perou, C. M.; Zou, F.; Jiang, Y.

10.1101/743591 — bioinformatics — Posted on 2019-08-22

927 Zygomorphic flowers have fewer visitors

Yoder, J. B.; Gomez, G.; Carlson, C. J.

10.1101/743872 — ecology — Posted on 2019-08-22

928 Loss of the Krppel-like factor 4 tumor suppressor is associated with epithelial-mesenchymal transition in colorectal cancer

Agbo, K. C.; Huang, J. Z.; Ghaleb, A. M.; Williams, J. L.; Shroyer, K. R.; Bialkowska, A. B.; Yang, V. W.

10.1101/743443 — cancer biology — Posted on 2019-08-22

929 Model-based recommendations for optimal surgical placement of epiretinal implants

Beyeler, M.; Boynton, G. M.; Fine, I.; Rokem, A.

10.1101/743484 — neuroscience — Posted on 2019-08-22

930 Efficient CRISPR/Cas9 genome editing in a salmonid fish cell line using a lentivirus delivery system

Gratacap, R. L.; Regan, T.; Dehler, C. E.; Martin, S. A. M.; Boudinot, P.; Collet, B.; Houston, R. D.

10.1101/734442 — genetics — Posted on 2019-08-22

931 Seasonal influenza: Modelling approaches to capture immunity propagation

Hill, E. M.; Petrou, S.; de Lusignan, S.; Yonova, I.; Keeling, M. J.

10.1101/637074 — epidemiology — Posted on 2019-08-22

932 A novel fully-human potency-matched dual cytokine-antibody fusion protein targets carbonic anhydrase IX in renal cell carcinomas

De Luca, R.; Gouyou, B.; Ongaro, T.; Villa, A.; Ziffels, B.; Sannino, A.; Buttinoni, G.; Galeazzi, S.; Mazzacuva, M.; Neri, D.

10.1101/744029 — bioengineering — Posted on 2019-08-22

933 Multidimensional Data Organization and Random Access in Large-Scale DNA Storage Systems

Song, X.; Shah, S.; Reif, J.

10.1101/743369 — synthetic biology — Posted on 2019-08-22

934 Sleep differentially affects early and late neuronal responses to sounds in auditory and perirhinal cortices

Sela, Y.; Krom, A. J.; Bergman, L.; Regev, N.; Nir, Y.

10.1101/743666 — neuroscience — Posted on 2019-08-22

935 Characterization of the brain functional architecture of psychostimulant withdrawal using single-cell whole brain imaging

Kimbrough, A.; Smith, L. C.; Kallupi, M.; Simpson, S.; Collazo, A.; George, O.

10.1101/743799 — neuroscience — Posted on 2019-08-22

936 An Active Inference Approach to Dissecting Reasons for Non-Adherence to Antidepressants

Smith, R.; Khalsa, S.; Paulus, M.

10.1101/743542 — neuroscience — Posted on 2019-08-22

937 Investigating Confidence Judgments using Reviews in Human and Monkeys

Stoll, F. M.; Procyk, E.

10.1101/741561 — neuroscience — Posted on 2019-08-22

938 A method for multiscale community detection in brain networks

Sanchez-Rodriguez, L. M.; Iturria-Medina, Y. M.; Mouches, P.; Sotero, R. C.

10.1101/743732 — neuroscience — Posted on 2019-08-22

939 Transcriptional profiling of non-injured nociceptors after spinal cord injury reveals diverse molecular changes

Yasko, J. R.; Moss, I. L.; Mains, R. E.

10.1101/743567 — neuroscience — Posted on 2019-08-22

940 Hippocampal Remapping as Hidden State Inference

Sanders, H.; Wilson, M. A.; Gershman, S. J.

10.1101/743260 — neuroscience — Posted on 2019-08-22

941 Replication Stress Generates Multiple Distinct Classes of Copy Number Alterations

Shaikh, N.; Mazzagatti, A.; Bakker, B.; Spierings, D. C. J. E.; Wardenaar, R.; Muliaditan, D.; Maniati, E.; Larsson, P.; Wang, J.; Foijer, F.; McClelland, S. E.

10.1101/743658 — molecular biology — Posted on 2019-08-22

942 Resurrection of a Global, Metagenomically Defined Microvirus

Kirchberger, P.; Ochman, H.

10.1101/743518 — microbiology — Posted on 2019-08-22

943 EvoFreq: Visualization of the Evolutionary Frequencies of Sequence and Model Data

Gatenbee, C. D.; Schenck, R. O.; Bravo, R. R.; Anderson, A. R. A.

10.1101/743815 — evolutionary biology — Posted on 2019-08-22

944 CoFe granules focus coordinated glycolytic mRNA localization and translation to fuel glucose fermentation

Morales-Polanco, F.; Bates, C.; Lui, J.; Casson, J.; Solari, C. A.; Pizzinga, M.; Forte, G.; Griffin, C.; Portela, P.; Ashe, M. P.

10.1101/741231 — cell biology — Posted on 2019-08-22

945 Modulating cellular cytotoxicity and phototoxicity of fluorescent organic salts through counterion pairing

Broadwater, D.; Bates, M.; Jayaram, M.; Young, M.; He, J.; Raithel, A. L.; Hamann, T. W.; Zhang, W.; Borhan, B.; Lunt, R. R.; Lunt, S. Y.

10.1101/743716 — bioengineering — Posted on 2019-08-22

946 Microhabitat partitioning correlates with opsin geneexpression in coral reef cardinalfishes (Apogonidae)

Luehrmann, M.; Cortesi, F.; Cheney, K.; de Busserolles, F.; Marshall, J.

10.1101/744011 — ecology — Posted on 2019-08-22

947 APPENDICULAR MORPHOLOGY AND LOCOMOTOR PERFORMANCE OF TWO MORPHOTYPES OF CONTINENTAL ANOLES: Anolis heterodermus AND Anolis tolimensis

Rios-Orjuela, J. C.; Camacho-Bastidas, J. S.; Jerez, A.

10.1101/743807 — zoology — Posted on 2019-08-22

948 Experience-dependent structural plasticity at pre- and postsynaptic sites of layer 2/3 cells in developing visual cortex

Sun, Y. J.; Espinosa, J. S.; Hoseini, M. S.; Stryker, M. P.

10.1101/743690 — neuroscience — Posted on 2019-08-22

949 Genome sequence and comparative analysis of reindeer (Rangifer tarandus) in northern Eurasia

Weldenegodguad, M.; Pokharel, K.; Ming, Y.; Honkatukia, M.; Peippo, J.; Reilas, T.; Roed, K. H.; Kantanen, J.

10.1101/739995 — genomics — Posted on 2019-08-22

950 Genomic dissection of 43 serum urate-associated loci provides multiple insights into molecular mechanisms of urate control.

Boocock, J.; Leask, M.; Okada, Y.; Asian Genetic Epidemiology Network (AGEN) Consortium, ; Matsuo, H.; Kawamura, Y.; Shi, Y.; Li, C.; Mount, D.; Mandal, A.; Wang, W.; Cadzow, M.; Gosling, A. L.; Major, T. J.; Horsfield, J.; Choi, H.; Fadason, T.; O'Sullivan, J. M.; Stahl, E.; Merriman, T.

10.1101/743864 — genetics — Posted on 2019-08-22

951 Whole genome sequencing of orofacial cleft trios from the Gabriella Miller Kids First Pediatric Research Consortium identifies a new locus on chromosome 21

Mukhopadhyay, N.; Bishop, M.; Mortillo, M.; Chopra, P.; Ketmanski, J. B.; Taub, M. A.; Moreno, L. M.; Valencia-Ramirez, L. C.; Restrepo, C.; Wehby, G. L.; Hecht, J. T.; Deleyiannis, F.; Butali, A.; Weinberg, S. M.; Beaty, T. H.; Murray, J. C.; Leslie, E. J.; Feingold, E.; Marazita, M. L.

10.1101/743526 — genetics — Posted on 2019-08-22

952 Population genetics of Bull Trout ( Salvelinus confluentus ) in the Upper Athabasca river basin

Carroll, E. K. T.; Vamosi, S. M.

10.1101/743203 — genetics — Posted on 2019-08-22

953 Unifying ecosystem resistance, resilience, and recovery from extreme stress into a single statistical framework

Lemoine, N.

10.1101/743708 — ecology — Posted on 2019-08-22

954 Rapidly Computing the Phylogenetic Transfer Index

Truszkowski, J. M.; Gascuel, O.; Swenson, K.

10.1101/743948 — bioinformatics — Posted on 2019-08-22

955 A 3D High Resolution Generative Deep-learning Network for Fluorescence Microscopy Image

Zhou, H.; Li, S.; Huang, Q.; Liu, S.; Quan, T.; Cai, R.; Erturk, A.; Zeng, S.

10.1101/743179 — neuroscience — Posted on 2019-08-22

956 Pupil diameter encodes the idiosyncratic, cognitive complexity of belief updating

Filipowicz, A. L. S.; Glaze, C. M.; Kable, J. W.; Gold, J. I.

10.1101/736140 — neuroscience — Posted on 2019-08-22

957 Severe Hyposmia Distinguishes Neuropathologically Confirmed Dementia with Lewy Bodies from Alzheimer’s Disease Dementia

Beach, T. G.; Adler, C. H.; Zhang, N.; Serrano, G. E.; Sue, L. I.; Driver-Dunckley, E. D.; Mehta, S.; Zamrini, E.; Sabbagh, M. N.; Shill, H. A.; Belden, C. M.; Shprecher, D. R.; Caselli, R. J.; Reiman, E. M.; Davis, K. J.; Long, K. E.; Nicholson, L. R.; Intorcia, A. J.; Glass, M. J.; Walker, J. E.; Callan, M.; Oliver, J. C.; Arce, R.; Gerkin, R. C.

10.1101/743856 — neuroscience — Posted on 2019-08-22

958 An MRI-Derived Neuroanatomical Atlas of the Fischer 344 Rat Brain for Automated Anatomical Segmentation

Goerzen, D.; Fowler, C.; Devenyi, G. A.; Germann, J.; Madularu, D.; Chakravarty, M.; Near, J.

10.1101/743583 — neuroscience — Posted on 2019-08-22

959 Humans Use Forward Thinking to Exert Social Control

Na, S.; Chung, D.; Hula, A.; Jung, J.; Fiore, V. G.; Dayan, P.; Gu, X.

10.1101/737353 — neuroscience — Posted on 2019-08-22

960 Highly efficient site-directed gene insertion in primary human natural killer cells using homologous recombination and CRISPaint delivered by AAV

Naeimi Kararoudi, M.; Likhite, S.; Elmas, E.; Schwartz, M.; Meyer, K.; Lee, D.

10.1101/743377 — immunology — Posted on 2019-08-22

961 Associations between Processing Speed and Psychopathology in a Transdiagnostic, Pediatric Sample

Kramer, E.; Koo, B.; Restrepo, A.; Koyama, M.; Neuhaus, R.; Pugh, K.; Andreotti, C.; Milham, M.

10.1101/743021 — developmental biology — Posted on 2019-08-22

962 Stochastic Models for Revealing the Dynamics of the Growth of Small Tumor Populations

Johnson, K. E.; Brock, A.

10.1101/743344 — cancer biology — Posted on 2019-08-22

963 Impact of crowding on the diversity of expanding populations

Schreck, C. F.; Fusco, D.; Karita, Y.; Martis, S.; Kayser, J.; Duvernoy, M.-C.; Hallatschek, O.

10.1101/743534 — biophysics — Posted on 2019-08-22

964 How structural brain network topologies associate with cognitive abilities in a value-based decision-making task

Banuelos, C.; Verstynen, T.

10.1101/743245 — neuroscience — Posted on 2019-08-22

965 Dispersal dynamics and local filtering vary with climate across a grassland landscape

Guittar, J.; Goldberg, D.; Klanderud, K.; Berge, A.; Boixaderas, M. R.; Meineri, E.; Topper, J.; Vandvik, V.

10.1101/567586 — ecology — Posted on 2019-08-22

966 Machine learnt image processing to predict weight and size of rice kernels

Singh, S. K.; Vidyarthi, S. K.; Tiwari, R.

10.1101/743427 — bioengineering — Posted on 2019-08-22

967 Genome-wide analysis of GATA factors in moso bamboo (Phyllostachys edulis) unveils that PeGATAs regulate shoot rapid-growth and rhizome development

Wang, T.; Yang, Y.; Lou, S.; Wei, W.; Zhao, Z.; Lin, C.; Ma, L.

10.1101/744003 — plant biology — Posted on 2019-08-22

968 The maize Hairy Sheath Frayed1 (Hsf1) mutant alters leaf patterning through increased cytokinin signaling

Muszynski, M. G.; Moss-Taylor, L.; Chudalayandi, S.; Cahill, J. F.; Del-Valle Echevarria, A. R.; Alvarez-Castro, I.; Petefish, A.; Sakakibara, H.; Krivosheev, D. M.; Lomin, S. N.; Romanov, G. A.; Thamotharan, S.; Dam, T.; Li, B.; Brugiere, N.

10.1101/743898 — plant biology — Posted on 2019-08-22

969 Chromosome-level assemblies of multiple Arabidopsis thaliana accessions reveal hotspots of genomic rearrangements

Jiao, W.-B.; Schneeberger, K.

10.1101/738880 — genetics — Posted on 2019-08-22

970 PBAF regulates compartmentalization of actively transcribing chromatin hubs

Kenworthy, C. A.; Liou, S.-H.; Chandris, P.; Wong, V.; Dziuba, P.; Lavis, L. D.; Liu, W.-L.; Singer, R. H.; Coleman, R. A.

10.1101/111674 — cell biology — Posted on 2019-08-22

971 Mice adaptively generate choice variability in a deterministic task

Belkaid, M.; Bousseyrol, E.; Durand-de Cuttoli, R.; Dongelmans, M.; Durante, E. K.; Yahia, T. A.; Didienne, S.; Hannesse, B.; Come, M.; Mourot, A.; Naude, J.; Sigaud, O.; Faure, P.

10.1101/527580 — neuroscience — Posted on 2019-08-22

972 Diversity and biogeography of SAR11 bacteria from the Arctic Ocean

Kraemer, S.; Ramachandran, A.; Colatriano, D.; Lovejoy, C.; Walsh, D.

10.1101/517433 — microbiology — Posted on 2019-08-22

973 Expression atlas of Selaginella moellendorffii provides insights into the evolution of vasculature, secondary metabolism and roots

Ferrari, C.; Shivhare, D.; Hansen, B. O.; Winter, N.; Pasha, A.; Esteban, E.; Provart, N. J.; Kragler, F.; Fernie, A. R.; Tohge, T.; Mutwil, M.

10.1101/744326 — plant biology — Posted on 2019-08-22

974 Human cerebral organoids capture the spatiotemporal complexity and disease dynamics of UBE3A

Sen, D.; Voulgaropoulos, A.; Drobna, Z.; Keung, A. J.

10.1101/742213 — bioengineering — Posted on 2019-08-22

975 Adaptation Mechanism Of The Adult Zebrafish Respiratory Organ To Endurance Training

Messerli, M.; Aaldijk, D.; Haberthür, D.; Röss, H.; Sande Melon, M.; Garcia Poyatos, C.; Khoma, O.-Z.; Wieland, F. A. M.; Fark, S.; Djonov, V.

10.1101/744300 — developmental biology — Posted on 2019-08-22

976 LINC complexes are mechanotransducers that discriminate Epithelial-Mesenchymal Transition programs

Dejardin, T.; Carollo, P. S.; Davidson, P. M.; Seiler, C.; Cuvelier, D.; Cadot, B.; Sykes, C.; Gomes, E. R.; Borghi, N.

10.1101/744276 — cell biology — Posted on 2019-08-22

977 Dissecting the Roles of Kalirin-7/PSD95/GluN2B Interactions in Different Forms of Synaptic Plasticity

Yeh, M. L.; Yasko, J. R.; Levine, E. S.; Eipper, B. A.; Mains, R. E.

10.1101/744508 — neuroscience — Posted on 2019-08-22

978 Association of Ddx5/p68 protein with the upstream erythroid enhancer element (EHS1) of the Klf1 gene

Chen, X.; Lohmann, F.; Bieker, J. J.

10.1101/743435 — molecular biology — Posted on 2019-08-22

979 A universal reporter cell line for bioactivity evaluation of engineered cytokine products

Mock, J. C.; Pellegrino, C. E.; Neri, D.

10.1101/739987 — immunology — Posted on 2019-08-22

980 ArrowSAM: In-Memory Genomics Data Processing through Apache Arrow Framework

Ahmad, T.; Peltenburg, J.; Ahmed, N.; Al Ars, Z.

10.1101/741843 — genomics — Posted on 2019-08-22

981 Protective microbiomes can limit the evolution of host pathogen defense

Metcalf, C. J.; Koskella, B.

10.1101/665265 — evolutionary biology — Posted on 2019-08-22

982 Chytrid rhizoid morphogenesis is adaptive and resembles hyphal development in ‘higher’ fungi

Laundon, D.; Chrismas, N.; Wheeler, G.; Cunliffe, M.

10.1101/735381 — developmental biology — Posted on 2019-08-22

983 Reconstruction of the phase dynamics of the somitogenesis clock oscillator

Morales, L. J.; Dale, K. J.; Murray, P. J.

10.1101/743724 — developmental biology — Posted on 2019-08-22

984 Cables2 Is a novel Smad2-regulatory factor essential for early embryonic development in mice

Dinh, T. T. H.; Iseki, H.; Mizuno, S.; Iijima-Mizuno, S.; Tanimoto, Y.; Daitoku, Y.; Kato, K.; Hamada, Y.; Hasan, A. S. H.; Suzuki, H.; Murata, K.; Muratani, M.; Ema, M.; Kim, J.-D.; Ishida, J.; Fukamizu, A.; Kato, M.; Takahashi, S.; Yagami, K.-i.; Wilson, V.; Arkell, R. M.; Sugiyama, F.

10.1101/744128 — developmental biology — Posted on 2019-08-22

985 Ends and middle: global force balance determines septum location in fission yeast

Le Goff, X.; Comelles, J.; Kervrann, C.; Riveline, D.

10.1101/520007 — cell biology — Posted on 2019-08-22

986 Model to link cell shape and polarity with organogenesis

Nielsen, B. F.; Nissen, S. B.; Sneppen, K.; Trusina, A.; Mathiesen, J.

10.1101/699413 — developmental biology — Posted on 2019-08-22

987 Methods detecting rhythmic gene expression are only reliable for strong signal.

Laloum, D.; Robinson-Rechavi, M.

10.1101/730937 — bioinformatics — Posted on 2019-08-22

988 Regionalized tissue fluidization by an actomyosin cable is required for epithelial gap closure during insect gastrulation

Tomancak, P.; Jain, A.; Ulman, V.; Mukherjee, A.; Prakash, M.; Pimpale, L.; Panfilio, K. A.; Jug, F.; Grill, S. W.; Pavlopoulos, A.; Münster, S.

10.1101/744193 — developmental biology — Posted on 2019-08-22

989 Cancer/Testis Antigens Differentially Expressed in Prostate Cancer: Potential New Biomarkers and Targets for Immunotherapies

Kulkarni, P.; Carleton, N. M.; Takahashi, S.; Shiraishi, T.; Mooney, S. M.; Vessella, R. L.; Getzenberg, R. H.; Veltri, R. W.; Kagohara, L.

10.1101/646869 — cancer biology — Posted on 2019-08-22

990 Sequence-based prediction of olfactory receptor responses

Chepurwar, S.; Gupta, A.; Haddad, R.; Gupta, N.

10.1101/664383 — neuroscience — Posted on 2019-08-22

991 RNA-seq analysis of a zebrafish tlr2 mutant shows a broad function of this Toll-like receptor in transcriptional and metabolic control and defense to Mycobacterium marinum infection

Yang, S.; Hu, W.; Shimada, Y.; Munch, M.; Marin-Juez, R.; Meijer, A. H.; Spaink, H. P. H.

10.1101/742601 — immunology — Posted on 2019-08-22

992 Parallel Evolution in the Emergence of Highly Pathogenic Avian Influenza A Viruses

Escalera-Zamudio, M.; Golden, M.; Gutierrez, B.; Theze, J.; Russell Keown, J.; Carrique, L.; Bowden, T. A.; Pybus, O. G.

10.1101/370015 — evolutionary biology — Posted on 2019-08-22

993 Bacterial microbiota composition of Ixodes ricinus ticks: the role of environmental variation, tick characteristics and microbial interactions

Aivelo, T.; Norberg, A.; Tschirren, B.

10.1101/559245 — ecology — Posted on 2019-08-22

994 Immunosuppression, rather than inflammation, is a salientfeature of sepsis in an Indian cohort

Mukhopadhyay, S.; Thatoi, P. K.; Das, B. K.; Mohapatra, S. K.

10.1101/742924 — genomics — Posted on 2019-08-22

995 Soybean drought resilience: contributions of a brassinosteroid functional analogue.

Perez Borroto, L. S.; Toum, L.; Castagnaro, A. P.; Gonzalez-Olmedo, J. L.; Coll-Manchado, F.; Welin, B. G. V.; Coll-Garcia, Y.; Pardo, E. M.

10.1101/742429 — plant biology — Posted on 2019-08-22

996 Pdm3 directs sleep circuit development to control sleep maturation

Chakravarti Dilley, L.; Szuperak, M.; Williams, C. E.; Saldana, R. L.; Gong, N. N.; Garbe, D. S.; Syed, M. H.; Jain, R.; Kayser, M. S.

10.1101/743161 — neuroscience — Posted on 2019-08-22

997 A transient amphipathic helix in the PCSK9 prodomain facilitates low-density lipoprotein binding

Sarkar, S. K.; Foo, A. C. Y.; Matyas, A.; Kosenko, T.; Goto, N. K.; Vergara-Jaque, A.; Lagace, T.

10.1101/743195 — molecular biology — Posted on 2019-08-22

998 The IRE1α stress signaling axis is a key regulator of neutrophil antimicrobial effector function

Abuaita, B. H.; Sule, G. J.; Schultz, T. L.; Gao, F.; Knight, J. S.; O'Riordan, M. X.

10.1101/743336 — immunology — Posted on 2019-08-22

999 Enhancer architecture sensitizes cell specific responses to Notch gene dose via a bind and discard mechanism

Kuang, Y.; Golan, O.; Preusse, K.; Cain, B.; Salomone, J.; Campbell, I.; Okwubido-Williams, F. V.; Hass, M. R.; Eafergan, N.; Moberg, K. H.; Kovall, R.; Kopan, R.; Sprinzak, D.; Gebelein, B.

10.1101/742908 — developmental biology — Posted on 2019-08-22

1000 Labeling proteins within Drosophila embryos by combining FRET reporters, position-specific genomic integration, and GAL4-reponsive expression

Chiba, A.; Deng, T.-C.; Hsieh, C.-J.; De Freitas, M.; Boulina, M.; Sharifai, N.; Samarajeewa, H.; Yanaba, T.; Baker, J. D.; Kim, M. D.; Zusman, S.; Wan, K. H.; Yu, C.; Celniker, S. E.

10.1101/743492 — developmental biology — Posted on 2019-08-22

1001 Inhibition of a negative feedback for persistent epithelial cell-cell junction contraction by p21-activated kinase 3

Uechi, H.; Kuranaga, E.

10.1101/743237 — cell biology — Posted on 2019-08-22

1002 Extradomain-B Fibronectin is a molecular marker of invasive breast cancer cells

Lu, Z.-R.; Vaidya, A.; Wang, H.; Qian, V.

10.1101/743500 — cancer biology — Posted on 2019-08-22

1003 Metal-Assisted and Microwave-Accelerated Germination

ASLAN, K.; STEVENSON, M.; GUY, J.; BONYI, E.; MOHAMMED, M.; OZTURK, B.; DRAKE, K.; MCLEAN, F.; SOUFFRANT, A.; BIGIO, A.

10.1101/743252 — bioengineering — Posted on 2019-08-22

1004 Length regulation of microtubule antiparallel overlaps by molecular motors

Kuan, H.-S.; Betterton, M.

10.1101/743880 — biophysics — Posted on 2019-08-22

1005 HA stability regulates H1N1 influenza virus replication and pathogenicity in mice by modulating type I interferon responses in dendritic cells

Russier, M.; Yang, G.; Briard, B.; Meliopoulos, V. A.; Cherry, S.; Kanneganti, T.-D.; Schultz-Cherry, S.; Vogel, P.; Russell, C. J.

10.1101/744052 — microbiology — Posted on 2019-08-22

1006 CLIJ: GPU-accelerated image processing for everyone

Haase, R.; Royer, L. A.; Steinbach, P.; Schmidt, D.; Dibrov, A.; Schmidt, U.; Weigert, M.; Maghelli, N.; Tomancak, P.; Jug, F.; Myers, E. W.

10.1101/660704 — bioinformatics — Posted on 2019-08-22

1007 NbCycB2 represses Nbwo activity via a negative feedback loop in the tobacco trichome development

Wu, M.; Cui, Y.; Ge, L.; Cui, L.; Xu, Z.; Zhang, H.; Wang, Z.; Zhou, D.; Wu, S.; Chen, L.; Cui, H.

10.1101/740126 — plant biology — Posted on 2019-08-22

1008 Selective translation by alternative bacterial ribosomes

Chen, Y.-X.; Xu, Z.-Y.; Ge, X.; Sanyal, S.; Lu, Z. J.; Javid, B.

10.1101/605931 — microbiology — Posted on 2019-08-22

1009 Simplified Methodology for a Modular and Genetically Expanded Protein Synthesis in Cell-Free Systems

Chemla, Y.; Ozer, E.; Shaferman, M.; Zaad, B.; Dandela, R.; Alfonta, L.

10.1101/742726 — synthetic biology — Posted on 2019-08-22

1010 Npas1+-Nkx2.1+ Neurons Form A Unique Pallidal Neuron Subclass

Abecassis, Z.; Berceau, B.; Win, P.; Garcia, D.; Xenias, H.; Cui, Q.; Pamucku, A.; Hernandez, V.; Chon, U.; Lim, B.; Justice, N.; Awatramani, R.; Kim, Y.; Hooks, B.; Gerfen, C. R.; Boca, S. M.; Chan, C. S.

10.1101/644674 — neuroscience — Posted on 2019-08-22

1011 Sex differences in maturation and attrition rate of adult born neurons in the hippocampus of rats

Yagi, S.; Splinter, J.; Tai, D.; Wong, S.; Galea, L.

10.1101/726398 — neuroscience — Posted on 2019-08-22

1012 Deep Learning-Based Point-Scanning Super-Resolution Imaging

Fang, L.; Monroe, F.; Novak, S. W.; Kirk, L.; Schiavon, C. R.; Yu, S. B.; Zhang, T.; Wu, M.; Kastner, K.; Kubota, Y.; Zhang, Z.; Pekkurnaz, G.; Mendenhall, J.; Harris, K.; Howard, J.; Manor, U.

10.1101/740548 — bioinformatics — Posted on 2019-08-22

1013 Phase variable glycosylation in non-typeable Haemophilus influenzae

Elango, D.; Schulz, B. L.

10.1101/744037 — biochemistry — Posted on 2019-08-22

1014 Identification of nitrogen-dependent QTL and underlying genes for root system architecture in hexaploid wheat

Griffiths, M. D.; Atkinson, J. A.; Gardiner, L.-J.; Swarup, R.; Pound, M. P.; Wilson, M. H.; Bennett, M. J.; Wells, D. M.

10.1101/591529 — plant biology — Posted on 2019-08-22

1015 Deceptive combined effects of short allele dominance and stuttering: an example with Ixodes scapularis, the main vector of Lyme disease in the U.S.A.

De Meeus, T.; Chan, C. T.; Ludwig, J. M.; Tsao, J. I.; Patel, J.; Bhagatwala, J.; Beati, L.

10.1101/622373 — evolutionary biology — Posted on 2019-08-22

1016 Self-reported health behaviors and longitudinal cognitive performance: Results from the Wisconsin Registry for Alzheimer’s Prevention

Mueller, K. D.; Koscik, R. L.; Norton, D.; Morris, M. C.; Jonaitis, E. M.; Clark, L. R.; Fields, T.; Allison, S.; Berman, S.; Kraning, S.; Zuelsdorff, M.; Okonkwo, O.; Chin, N.; Carlsson, C.; Bendlin, B.; Hermann, B. P.; Johnson, S. C.

10.1101/742700 — neuroscience — Posted on 2019-08-21

1017 In vivo bioreactor using cellulose membrane benefit engineering cartilage by improving the chondrogenesis and modulating the immune response

Park, I.-S.; Li, X. G.; Choi, B. H.; kim, U.-J.; min, B.-H.

10.1101/742759 — cell biology — Posted on 2019-08-21

1018 Health behaviors among male and female university students in Cambodia: a cross-sectional survey

Yi, S.; Sok, S.; Pal, K.; Tuot, S.; Yi, R.; Chhoun, P.

10.1101/742718 — scientific communication and education — Posted on 2019-08-21

1019 Megakaryocytes Display Innate Immune Cell Functions and Respond during Sepsis

Irimia, D.; Frydman, G. H.; Ellett, F.; Jorgensen, J.; Marand, A. L.; Zukerberg, L.; Selig, M.; Tessier, S.; Wong, K. H. K.; Olaleye, D.; Vanderburg, C. R.; Fox, J. G.; Tompkins, R. G.

10.1101/742676 — immunology — Posted on 2019-08-21

1020 The giant pouched rat (Cricetomys ansorgei) olfactory receptor repertoire

Freeman, A. R.; Ophir, A. G.; Sheehan, M. J.

10.1101/742668 — evolutionary biology — Posted on 2019-08-21

1021 Analysing complex metagenomic data with MicroWineBar

Klincke, F.; Abel-Kistrup, M.; Saerens, S. M. G.; Rasmussen, S.

10.1101/742684 — bioinformatics — Posted on 2019-08-21

1022 Friends with malefit. The effects of keeping dogs and cats, sustaining animal-related injuries and Toxoplasma infection on health and quality of life

Flegr, J.; Preiss, M.

10.1101/742734 — animal behavior and cognition — Posted on 2019-08-21

1023 Distinct neuronal subtypes of the lateral habenula differentially target ventral tegmental area dopamine neurons

Wallace, M. L.; Huang, K. W.; Hochbaum, D.; Hyun, M.; Radeljic, G.; Sabatini, B. L.

10.1101/743401 — neuroscience — Posted on 2019-08-21

1024 Paclitaxel-induced peripheral neuropathy is caused by epidermal ROS and mitochondrial damage through conserved MMP-13 activation

Cirrincione, A. M.; Rieger, S.; Pellegrini, A. D.; Dominy, J.; Benjamin, M. E.; Utkina-Sosunova, I.; Lotti, F.; Jergova, S.; Sagen, J.

10.1101/743419 — pathology — Posted on 2019-08-21

1025 Assortative mating by population of origin in a mechanistic model of admixture

Goldberg, A.; Rastogi, A.; Rosenberg, N. A.

10.1101/743476 — evolutionary biology — Posted on 2019-08-21

1026 Protein folding modulates the adhesion strategy of Gram positive pathogens

Alonso-Caballero, A.; Echelman, D. J.; Tapia-Rojo, R.; Haldar, S.; Eckels, E. C.; Fernandez, J. M.

10.1101/743393 — biophysics — Posted on 2019-08-21

1027 Conserved abilities of individual recognition and genetically modulated social responses in young chicks (Gallus gallus)

Versace, E.; Ragusa, M.; Pallante, V.

10.1101/743765 — neuroscience — Posted on 2019-08-21

1028 Hippocampal subfield volumes are uniquely affected in PTSD and depression: International analysis of 31 cohorts from the PGC-ENIGMA PTSD Working Group

Salminen, L. E.; Sämann, P. G.; Zheng, Y.; Dennis, E. L.; Clarke, E. K.; Jahanshad, N.; Iglesias, J. E.; Whelan, C. D.; Bruce, S. E.; Hayes, J. P.; Seedat, S.; Averill, C. L.; Baugh, L. A.; Bomyea, J.; Bright, J.; Buckle, C. J.; Choi, K.; Davenport, N. D.; Davidson, R. J.; Densmore, M.; Disner, S. G.; du Plessis, S.; Elman, J. A.; Fani, N.; Forster, G. L.; Franz, C. E.; Frijling, J. L.; Gonenc, A.; Gruber, S. A.; Grupe, D. W.; Guenette, J. P.; Haswell, C. C.; Hofmann, D.; Hollifield, M.; Hosseini, B.; Hudson, A. R.; Ipser, J.; Jovanovic, T.; Kennedy-Krage, A.; Kennis, M.; King, A.; Kinzel, P.

10.1101/739094 — neuroscience — Posted on 2019-08-21

1029 Prolonged tonic pain in healthy humans disrupts intrinsic brain networks implicated in pain modulation

Meeker, T. J.; Schmid, A.-C.; Keaser, M. L.; Khan, S.; Gullapalli, R. P.; Dorsey, S. G.; Greenspan, J. D.; Seminowicz, D.

10.1101/740779 — neuroscience — Posted on 2019-08-21

1030 Attenuated Salmonella typhimurium cancer therapy has direct effects on the tumor epithelium in colorectal cancer

Maslowski, K. M.; Takahashi, M.; Sato, Y.; Mackie, G. M.; Everard, I. M.; Copland, A.; Oda, H.; Kanaya, T.; Ohno, H.

10.1101/741686 — cancer biology — Posted on 2019-08-21

1031 Brunner syndrome associated MAOA dysfunction in human iPSC derived dopaminergic neurons results in dysregulated NMDAR expression and increased network activity

Shi, Y.; van Rhijn, J.-R.; Bormann, M.; Mossink, B.; Frega, M.; Hakobjan, M.; Kittel-Schneider, S.; Schubert, D.; Brunner, H.; Franke, B.; Nadif Kasri, N.

10.1101/741108 — neuroscience — Posted on 2019-08-21

1032 Integrative Genomic Analysis for the Bioprospection of Regulators and Accessory Enzymes Associated with Cellulose Degradation in a Filamentous Fungus (Trichoderma harzianum)

Ferreira Filho, J. A.; Horta, M. A. C.; dos Santos, C. A.; Almeida, D. A.; Murad, N. F.; Mendes, J. S.; Sforca, D. A.; Silva, C. B. C.; Crucello, A.; de Souza, A. P.

10.1101/731323 — genomics — Posted on 2019-08-21

1033 Copy-number variation contributes 9% of pathogenicity in the inherited retinal degenerations

Zampaglione, E.; Kinde, B.; Place, E. M.; Navarro-Gomez, D.; Maher, M.; Jamshidi, F.; Nassiri, S.; Mazzone, J. A.; Finn, C.; Schlegel, D.; Comander, J.; Pierce, E. A.; Bujakowska, K. M.

10.1101/742106 — genomics — Posted on 2019-08-21

1034 A Targeted Mass Spectrometry Approach to detect and quantify Oxidised Phospholipids in plasma samples of Diabetic patients

Thakker, A.

10.1101/741132 — biochemistry — Posted on 2019-08-21

1035 Deep learning at base-resolution reveals motif syntax of the cis-regulatory code

Avsec, Z.; Weilert, M.; Shrikumar, A.; Alexandari, A.; Krueger, S.; Dalal, K.; Fropf, R.; McAnany, C.; Gagneur, J.; Kundaje, A.; Zeitlinger, J.

10.1101/737981 — genomics — Posted on 2019-08-21

1036 Impact of overfishing on density and test-diameter size of the sea urchin Tripneustes gratilla at Wakatobi Archipelago, south-eastern Sulawesi, Indonesia

Nane, L.

10.1101/727271 — ecology — Posted on 2019-08-21

1037 G-Protein-Coupled Receptor-Membrane Interactions Depend on the Receptor Activation state

Bhattarai, A.; Wang, j.; Miao, Y.

10.1101/743757 — biophysics — Posted on 2019-08-21

1038 Deformable mirror-based two-photon microscopy for axial mammalian brain imaging

Peinado, A.; Bendek, E.; Yokoyama, S.; Poskanzer, K. E.

10.1101/736124 — neuroscience — Posted on 2019-08-21

1039 Frequency specific network effective connectivity: ERP analysis of recognition memory process by directed connectivity estimators

Darvishi-Bayazi, M.-J.; Motie Naseabadi, A.; Curran, T.

10.1101/739573 — bioengineering — Posted on 2019-08-21

1040 A landmark-free morphometrics pipeline: Application to characterise a Down syndrome model skull phenotype

Toussaint, N.; Redhead, Y.; Liu, W.; Fisher, E.; Hallgrimsson, B.; Tybulewicz, V.; Green, J. B. A.; Schnabel, J.

10.1101/711259 — genetics — Posted on 2019-08-21

1041 Seed-dispersal networks lose complexity in tropical forest fragments

Emer, C.; Pizo, M. A.; Ribeiro, M. C.; da Silva, F. R.; Jordano, P.; Galetti, M.

10.1101/701730 — ecology — Posted on 2019-08-21

1042 Phylogenetic Characterization of the Energy-taxis Receptor Aer in Pseudomonas and Phenotypic Characterization in P. pseudoalcaligenes KF707

Booth, S. C.; Turner, R. J.

10.1101/081455 — microbiology — Posted on 2019-08-21

1043 Enhancing sensitivity and controlling false discovery rate in somatic indel discovery

Köster, J.; Dijkstra, L.; Marschall, T.; Schönhuth, A.

10.1101/741256 — bioinformatics — Posted on 2019-08-21

1044 Evolution of a novel and adaptive floral scent in wild tobacco

Guo, H.; Lackus, N. D.; Koellner, T. G.; Bing, J.; Wang, Y.; Baldwin, I. T.; Xu, S.

10.1101/738112 — evolutionary biology — Posted on 2019-08-21

1045 Modeling vaccine-induced immunotherapy: treatment scheduling and robustness with virtual mice cohorts

Bhatt, P.; Kambara, M.; Pilon-Thomas, S.; Rejniak, K. A.; Chamseddine, I. M.

10.1101/740878 — cancer biology — Posted on 2019-08-21

1046 BMP-signalling inhibition in Drosophila secondary cells remodels the seminal proteome, and self and rival ejaculate functions

Hopkins, B. R.; Sepil, I.; Bonham, S.; Miller, T.; Charles, P. D.; Fischer, R.; Kessler, B. M.; Wilson, C.; Wigby, S.

10.1101/741587 — evolutionary biology — Posted on 2019-08-21

1047 Molecular profiling of driver events and tumor-infiltrating lymphocytes in metastatic uveal melanoma

Karlsson, J.; Nilsson, L. M.; Forsberg, E. M.; Mitra, S.; Alsen, S.; Shelke, G.; Sah, V. R.; Stierner, U.; All-Eriksson, C.; Einarsdottir, B.; Jespersen, H.; Ny, L.; Lindner, P.; Larsson, E.; Olofsson Bagge, R.; Nilsson, J. A.

10.1101/742023 — cancer biology — Posted on 2019-08-21

1048 A systematic NGS-based approach for contaminant detection and functional inference

Park, S.-J.; Onizuka, S.; Seki, M.; Suzuki, Y.; Iwata, T.; Nakai, K.

10.1101/741934 — bioinformatics — Posted on 2019-08-21

1049 The Cyclic AMP Receptor Protein Regulates Quorum Sensing and Global Gene Expression in Yersinia pestis During Planktonic Growth and Growth in Biofilms

Ritzert, J. T.; Minasov, G.; Embry, R.; Schipma, M. J.; Satchell, K. J.

10.1101/742031 — microbiology — Posted on 2019-08-21

1050 Taking the next-gen step: comprehensive antimicrobial resistance detection from Burkholderia pseudomallei genomes

Madden, D. E.; Webb, J. R.; Steinig, E. J.; Mayo, M.; Currie, B. J.; Price, E. P.; Sarovich, D. S.

10.1101/720607 — genomics — Posted on 2019-08-21

1051 Deep Learning-Based Point-Scanning Super-Resolution Imaging

Fang, L.; Monroe, F.; Novak, S. W.; Kirk, L.; Schiavon, C. R.; Yu, S. B.; Zhang, T.; Wu, M.; Kastner, K.; Kubota, Y.; Zhang, Z.; Pekkurnaz, G.; Mendenhall, J.; Harris, K.; Howard, J.; Manor, U.

10.1101/740548 — bioinformatics — Posted on 2019-08-21

1052 Aquila_stLFR: assembly based variant calling package for stLFR and hybrid assembly for linked-reads

Zhou, X.; Zhang, L.; Fang, X.; Liu, Y.; Dill, D. L.; Sidow, A.

10.1101/742239 — bioinformatics — Posted on 2019-08-21

1053 Dissecting the factors shaping fish skin microbiomes in a heterogeneous inland water system

Krotman, Y.; Yergaliyev, T.; Alexander, R. S.; Avrahami, Y.; Szitenberg, A.

10.1101/739748 — microbiology — Posted on 2019-08-21

1054 Mesoscale computational protocols for the design of highly cooperative bivalent macromolecules

Saurabh, S.; Piazza, F.

10.1101/743088 — biophysics — Posted on 2019-08-21

1055 Phosphoinositide-binding proteins mark, shape and functionally modulate highly-diverged endocytic compartments in the parasitic protist Giardia lamblia

Cernikova, L.; Faso, C.; Hehl, A. B.

10.1101/741348 — microbiology — Posted on 2019-08-21

1056 Heart Rate n-Variability (HRnV) and Its Application to Risk Stratification of Chest Pain Patients in the Emergency Department

Liu, N.; Guo, D.; Koh, Z. X.; Ho, A.; Xie, F.; Tagami, T.; Sakamoto, J.; Pek, P. P.; Chakraborty, B.; Lim, S. H.; Tan, J.; Ong, M.

10.1101/738989 — bioengineering — Posted on 2019-08-21

1057 Testosterone-mediated behavior shapes the emergent properties of social networks

Dakin, R.; Moore, I. T.; Horton, B. M.; Vernasco, B. J.; Ryder, T. B.

10.1101/737650 — animal behavior and cognition — Posted on 2019-08-21

1058 Co-catabolism of arginine and succinate drives symbiotic nitrogen fixation

Flores-Tinoco, C. E.; Christen, M.; Christen, B.

10.1101/741314 — plant biology — Posted on 2019-08-21

1059 Development of a functional genetic tool for Anopheles gambiae oenocyte characterisation: application to cuticular hydrocarbon synthesis

Lynd, A.; Balabanidou, V.; Grosman, R.; Maas, J. A.; Lian, L.-Y.; Vontas, J.; Lycett, G. J.

10.1101/742619 — molecular biology — Posted on 2019-08-21

1060 THE C99 FRAGMENT OF APP REGULATES CHOLESTEROL TRAFFICKING

Pera, M.; Larrea, D.; Montesinos, J.; Guardia-Laguarta, C.; Agrawal, R. R.; Velasco, K. R.; Xu, Y.; Koo, S. Y.; Snead, A. M.; Sproul, A. A.; Area-Gomez, E.

10.1101/740670 — molecular biology — Posted on 2019-08-21

1061 Differential remodeling of the electron transport chain is required to support TLR3 and TLR4 signaling and cytokine production in macrophages

Ahmed, D.; Roy, D.; Jaworski, A.; Edwards, A.; Abizaid, A.; Kumar, A.; Golshani, A.; Cassol, E.

10.1101/742098 — immunology — Posted on 2019-08-21

1062 Evolution of the PRD1-adenovirus lineage: a viral tree of life incongruent with the cellular universal tree of life

Woo, A. C.; Gaia, M.; Guglielmini, J.; Da Cunha, V.; Forterre, P.

10.1101/741942 — evolutionary biology — Posted on 2019-08-21

1063 HypercubeME: two hundred million combinatorially complete datasets from a single experiment

Avino Esteban, L.; Lonishin, L. R.; Bobrovskiy, D.; Leleytner, G.; Bogatyreva, N. S.; Kondrashov, F. A.; Ivankov, D. N.

10.1101/741827 — evolutionary biology — Posted on 2019-08-21

1064 Privatization of biofilm matrix in structurally heterogeneous biofilms

Otto, S. B.; Martin, M.; Schafer, D.; Hartmann, R.; Drescher, K.; Brix, S.; Dragos, A.; Kovacs, A. T.

10.1101/742593 — microbiology — Posted on 2019-08-21

1065 Bypass of an epigenetic S-phase transcriptional module by convergent nutrient stress signals

DELABY, M.; PANIS, G.; FUMEAUX, C.; DEGEORGES, L.; VIOLLIER, P. H.

10.1101/741363 — microbiology — Posted on 2019-08-21

1066 Characterizing Adult cochlear supporting cell transcriptional diversity using single-cell RNA-Seq: Validation in the adult mouse and translational implications for the adult human cochlea

Hoa, M.; Olszewski, R.; Li, X.; Taukulis, I.; DeTorres, A.; Linthicum, F. H.; Ishiyama, A.; Izquierdo, D. M.; Morell, R. J.; Kelley, M. W.

10.1101/742270 — genomics — Posted on 2019-08-21

1067 Runx3 prevents spontaneous colitis by directingdifferentiation of anti-inflammatory mononuclear phagocytes

hantisteanu, S.; Dicken, Y.; Negreanu, V.; Goldenberg, D.; Brenner, O.; Leshkowitz, D.; Lotem, J.; Levanon, D.; Groner, Y.

10.1101/742650 — genetics — Posted on 2019-08-21

1068 A Proteomic Atlas of Senescence-Associated Secretomes for Aging Biomarker Development

Basisty, N.; Kale, A.; Jeon, O.; Kuehnemann, C.; Payne, T.; Rao, C.; Holtz, A.; Shah, S.; Sharma, V.; Ferrucci, L.; Campisi, J.; Schilling, B.

10.1101/604306 — cell biology — Posted on 2019-08-21

1069 Mg2+ Impacts the Twister Ribozyme through Push-Pull Stabilization of Non-Sequential Phosphate Pairs

Kognole, A.; MacKerell, A.

10.1101/742940 — biophysics — Posted on 2019-08-21

1070 Systemic Commitments of the Context-Dependency; Basics of Elementary Coordination in Circadian Cycles

Park, C.

10.1101/738872 — systems biology — Posted on 2019-08-21

1071 NbCycB2 represses Nbwo activity via a negative feedback loop in the tobacco trichome development

Wu, M.; Cui, Y.; Ge, L.; Cui, L.; Xu, Z.; Zhang, H.; Wang, Z.; Zhou, D.; Wu, S.; Chen, L.; Cui, H.

10.1101/740126 — plant biology — Posted on 2019-08-21

1072 Dysregulation of Sterol Regulatory Element-Binding Protein 2 Gene in HIV Treatment-Experienced Individuals

Sopeyin, A.; Zhou, L.; Li, M.; Barakat, L.; Paintsil, E.

10.1101/742486 — pharmacology and toxicology — Posted on 2019-08-21

1073 Cross-species cortical alignment identifies different types of neuroanatomical reorganization in higher primates

Eichert, N.; Robinson, E. C.; Bryant, K. L.; Jbabdi, S.; Jenkinson, M.; Li, L.; Krug, K.; Watkins, K. E.; Mars, R. B.

10.1101/645234 — neuroscience — Posted on 2019-08-21

1074 Benchmarking tomographic acquisition schemes for high-resolution structural biology

Turonova, B.; Hagen, W. J. H.; Obr, M.; Kräusslich, H.-G.; Beck, M.

10.1101/742254 — molecular biology — Posted on 2019-08-21

1075 Regulation of circular RNA circNFATc3 in cancer cells alters proliferation, migration and oxidative phosphorylation

Karedath, T.; Ahmed, I.; Al DAsim, F.; Al-Qurashi, A.; Raza, A.; Scott Andrews, S.; Aron Ramadan, S.; M. Al-Thani, N.; Abdulsalam Ahmed, A.; Ali Mohamoud, Y.; Dermime, S.; Malek, J. A.

10.1101/741041 — molecular biology — Posted on 2019-08-21

1076 Genome of an iconic Australian bird: Chromosome-scale assembly and linkage map of the superb fairy-wren (Malurus cyaneus)

Penalba, J. V.; Deng, Y.; Fang, Q.; Joseph, L.; Moritz, C.; Cockburn, A.

10.1101/742965 — genomics — Posted on 2019-08-21

1077 Complex processes of cryptic speciation in mouse lemurs from a micro-endemism hotspot in Madagascar

SchuBler, D.; Salmona, J.; Blanco, M. B.; Poelstra, J.; Tiley, G. P.; Andriambeloson, J. B.; Bouchez, O.; Campbell, C. R.; Etter, P. D.; Iribar, A.; Hohenlohe, P. A.; Hunnicutt, K. E.; Johnson, E. A.; Larsen, P. A.; Mantilla-Contreras, J.; Manzi, S.; Miller, A.; Randrianambinina, B.; Rasolofoson, D. W.; Stahlke, A. R.; Weisrock, D.; Williams, R. C.; Chikhi, L.; Louis, E. E.; Yoder, A. D.; Radespiel, U.

10.1101/742361 — evolutionary biology — Posted on 2019-08-21

1078 The evolution of parental effects when selection acts on fecundity versus viability

Kuijper, B.; Johnstone, R. A.

10.1101/741835 — evolutionary biology — Posted on 2019-08-21

1079 Loss of dominant caterpillar genera in a protected tropical forest

Salcido, D. M.; Forister, M. L.; Garcia, H.; Dyer, L. A.

10.1101/631028 — ecology — Posted on 2019-08-21

1080 Progressive impairments in executive function in the APP/PS1 model of Alzheimer’s disease as measured by translatable touchscreen testing

Shepherd, A.; Lim, J. K. H.; Wong, V. H. Y.; Zeleznikow-Johnston, A. M.; Churilov, L.; Nguyen, C. T. O.; Bui, B. V.; Hannan, A. J.; Burrows, E. L.

10.1101/742494 — animal behavior and cognition — Posted on 2019-08-21

1081 A systemic approach provides insights into the salt stress adaptation mechanisms of contrasting bread wheat genotypes

Duarte-Delgado, D.; Dadshani, S.; Schoof, H.; Oyiga, B. C.; Schneider, M.; Mathew, B.; Leon, J.; Ballvora, A.

10.1101/741090 — systems biology — Posted on 2019-08-21

1082 Controlling the Mitochondrial Protonmotive Force with Light to Impact Cellular Stress Resistance

Berry, B. J.; Trewin, A. J.; Milliken, A. S.; Baldzizhar, A.; Amitrano, A. M.; Kim, M.; Wojtovich, A. P.

10.1101/742536 — physiology — Posted on 2019-08-21

1083 Nutrient regulation of the islet epigenome controls adaptive insulin secretion

Wortham, M.; Liu, F.; Fleischman, J. Y.; Wallace, M.; Mulas, F.; Vinckier, N. K.; Harrington, A. R.; Cross, B. R.; Chiou, J.; Patel, N. A.; Sui, Y.; Jhala, U. S.; Shirihai, O. S.; Huising, M. O.; Gaulton, K. J.; Metallo, C. M.; Sander, M.

10.1101/742403 — physiology — Posted on 2019-08-21

1084 Lipid metabolism links nutrient-exercise timing to insulin sensitivity in men classified as overweight or obese.

Edinburgh, R.; Bradley, H.; Adbullah, N.-F.; Robinson, S.; Chrzanowski-Smith, O.; Walhin, J.-P.; Joanisse, S.; Manolopoulos, K.; Philp, A.; Hengist, A.; Chabowski, A.; Brodsky, F.; Koumanov, F.; Betts, J.; Thompson, D.; Wallis, G.; Gonzalez, J.

10.1101/742627 — physiology — Posted on 2019-08-21

1085 How Reliable are Prefrontal tDCS Effects - Zero-effects on the Keep-track Task?

Paunovic, D.; Puric, D.; Bjekic, J.; Filipovic, S.

10.1101/736710 — neuroscience — Posted on 2019-08-21

1086 Machine-driven parameter optimisation of biochemical reactions

Poulain, S.; Arnaud, O.; Kato, S.; Chen, I.; Ishida, H.; Carninci, P.; Plessy, C.

10.1101/739771 — molecular biology — Posted on 2019-08-21

1087 Altered immunity of laboratory mice in the natural environment is associated with fungal colonization

Yeung, F.; Chen, Y.-H.; Lin, J.-D.; Leung, J. M.; McCauley, C.; Devlin, J. C.; Hansen, C.; Cronkite, A.; Stephens, Z. W.; Drake-Dunn, C.; Ruggles, K. V.; Round, J. L.; Loke, P.; Graham, A. L.; Cadwell, K.

10.1101/742387 — immunology — Posted on 2019-08-21

1088 Adaptational lags during periods of environmental change

Van Dooren, T. J.

10.1101/742916 — evolutionary biology — Posted on 2019-08-21

1089 Partitioning plant spectral diversity into alpha and beta components

Laliberte, E.; Schweiger, A. K.; Legendre, P.

10.1101/742080 — ecology — Posted on 2019-08-21

1090 Preservation of stemness in high-grade serous ovarian cancer organoids requires low Wnt environment

Hoffmann, K.; Berger, H.; Kulbe, H.; Thillainadarasan, S.; Mollenkopf, H.-J.; Zemojtel, T.; Taube, E.; Darb-Esfahani, S.; Mangler, M.; Sehouli, J.; Chekerov, R.; Braicu, E.; Meyer, T. F.; Kessler, M.

10.1101/741397 — cancer biology — Posted on 2019-08-21

1091 Analyzing data independent acquisition mass spectrometry with noiseless ion-networks

Willems, S.; Daled, S.; Van Puyvelde, B.; De Clerck, L.; Vande Casteele, S.; Van Nieuwerburgh, F.; Deforce, D.; Dhaenens, M.

10.1101/726273 — bioinformatics — Posted on 2019-08-21

1092 Query Combinators: Domain Specific Query Languages for Medical Research

Evans, C.; Simonov, K.

10.1101/737619 — bioinformatics — Posted on 2019-08-21

1093 Synergic Combination of Stimulated Emission Depletion Microscopy with Image Scanning Microscopy to Reduce Light Dosage

Tortarolo, G.; Castello, M.; Koho, S. V.; Vicidomini, G.

10.1101/741389 — bioengineering — Posted on 2019-08-21

1094 Metabolic cofactors act as initiating substrates for primase and affect replication primer processing

Julius, C.; Yuzenkova, Y.

10.1101/741967 — biochemistry — Posted on 2019-08-21

1095 Simplified Methodology for a Modular and Genetically Expanded Protein Synthesis in Cell-Free Systems

Chemla, Y.; Ozer, E.; Alfonta, L.; Shaferman, M.; Zaad, B.; Dandela, R.

10.1101/742726 — synthetic biology — Posted on 2019-08-21

1096 Cross-compatibility of five highbush blueberry varieties and ideal crossing combinations

Martin, K.; Anderson, B.; Minnaar, C.; de Jager, M.

10.1101/742114 — plant biology — Posted on 2019-08-21

1097 Tmod2 is a regulator of cocaine responses through control of striatal and cortical excitability, and drug-induced plasticity

Mitra, A.; Deats, S. P.; Dickson, P.; Zhu, J.; Gardin, J.; Neiman, B.; Henkelman, M.; Tsai, N.-P.; Chesler, E.; Zhang, Z.-w.; Kumar, V.

10.1101/648295 — neuroscience — Posted on 2019-08-21

1098 CRISPR/Cas13a powered electrochemical microfluidic biosensor for nucleic acid amplification-free miRNA diagnostics

Bruch, R.; Baaske, J.; Chatelle, C.; Meirich, M.; Madlener, S.; Weber, W.; Dincer, C.; Urban, G. A.

10.1101/738617 — molecular biology — Posted on 2019-08-21

1099 ER stress-linked autophagy stabilizes apoptosis effector PERP and triggers its co-localization with SERCA2b at ER-plasma membrane junctions

McDonnell, S.; Spiller, D. G.; White, M. R. H.; Prior, I.; Paraoan, L.

10.1101/742882 — molecular biology — Posted on 2019-08-21

1100 The Clinical Significance and Biological Function of DPEP1 in B-cell Acute Lymphoblastic Leukemia

Zhang, J.-M.; Xu, Y.; Gale, R. P.; Wu, L.-X.; Zhang, J.; Feng, Y.-H.; Qin, Y.-Z.; Jiang, H.; Jiang, Q.; Jiang, B.; Liu, Y.-R.; Chen, Y.-H.; Wang, Y.; Zhang, X.-H.; Xu, L.-P.; HUANG, X.; Liu, K.-Y.; Ruan, G.-R.

10.1101/742551 — molecular biology — Posted on 2019-08-21

1101 RNA-seq analysis of a zebrafish tlr2 mutant shows a broad function of this Toll-like receptor in transcriptional and metabolic control and defense to Mycobacterium marinum infection

Yang, S.; Hu, W.; Shimada, Y.; Munch, M.; Marin-Juez, R.; Meijer, A. H.; Spaink, H. P. H.

10.1101/742601 — immunology — Posted on 2019-08-21

1102 Genome sequencing of the nine-spined stickleback (Pungitius pungitius) provides insights into chromosome evolution.

Varadharajan, S.; Rastas, P.; Loytynoja, A.; Matschiner, M.; Calboli, F. C. F.; Guo, B.; Nederbragt, A. J.; Jakobsen, K. S.; Merila, J.

10.1101/741751 — genomics — Posted on 2019-08-21

1103 CRISPR-Cas off-target detection using Oxford Nanopore sequencing - is the mitochondrial genome more vulnerable to off-targets?

Chakraborty, S.

10.1101/741322 — genomics — Posted on 2019-08-21

1104 ArrowSAM: In-Memory Genomics Data Processing through Apache Arrow Framework

Ahmad, T.

10.1101/741843 — genomics — Posted on 2019-08-21

1105 The Interaction of LILRB2 with HLA-B is Associated with Psoriasis Susceptibility

Yanovsky, R. L.; Chen, H.; Leslie, S.; Carrington, M.; Liao, W.

10.1101/741983 — genetics — Posted on 2019-08-21

1106 Interactions between earliest Linearbandkeramik farmers and central European hunter gatherers at the dawn of European Neolithization

Nikitin, A. G.; Stadler, P.; Kotova, N.; Teschler-Nicola, M.; Price, T. D.; Hoover, J.; Kennett, D. J.; Lazaridis, I.; Rohland, N.; Lipson, M.; Reich, D. E.

10.1101/741900 — genetics — Posted on 2019-08-21

1107 Evolution of Ty1 copy number control in yeast by horizontal transfer of a gag gene

Czaja, W.; Bensasson, D.; Anh, H. W.; Garfinkel, D. J.; Bergman, C. M.

10.1101/741611 — evolutionary biology — Posted on 2019-08-21

1108 The transcription factor E2A drives neural differentiation in pluripotent cells

Rao, C.; Malaguti, M.; Mason, J.; Lowell, S.

10.1101/736033 — developmental biology — Posted on 2019-08-21

1109 GapMind: Automated annotation of amino acid biosynthesis

Price, M. N.; Deutschbauer, A. M.; Arkin, A. P.

10.1101/741918 — bioinformatics — Posted on 2019-08-21

1110 Electrochemical Roughening and Carbon Nanotube Coating of Tetrodes for Chronic Single-Unit Recording

Xia, Z.; Arias-Gil, G.; Deckert, M.; Vollmer, M.; Curran, A.; Herrera-Molina, R.; Brosch, M.; Krug, K.; Schmidt, B.; Ohl, F. W.; Lippert, M. T.; Takagaki, K.

10.1101/738245 — bioengineering — Posted on 2019-08-21

1111 Seasonal influenza: Modelling approaches to capture immunity propagation

Hill, E. M.; Petrou, S.; de Lusignan, S.; Yonova, I.; Keeling, M. J.

10.1101/637074 — epidemiology — Posted on 2019-08-21

1112 C99 selectively accumulates in vulnerable neurons in Alzheimer’s disease

Pulina, M.; Hopkins, M.; Haroutunian, V.; Greengard, P.; Bustos, V.

10.1101/527572 — neuroscience — Posted on 2019-08-21

1113 Evidence for a multi-level trophic organization of the human gut microbiome

Wang, T.; Goyal, A.; Dubinkina, V.; Maslov, S.

10.1101/603365 — microbiology — Posted on 2019-08-21

1114 Biogeographic study of human gut-associated crAssphage suggests impacts from industrialization and recent expansion

Honap, T. P.; Sankaranarayanan, K.; Schnorr, S. L.; Ozga, A. T.; Warinner, C.; Lewis, C. M.

10.1101/384677 — evolutionary biology — Posted on 2019-08-21

1115 Modulation of kinesin’s load-bearing capacity by force geometry and the microtubule track

Pyrpassopoulos, S.; Shuman, H.; Ostap, E. M.

10.1101/587089 — biophysics — Posted on 2019-08-21

1116 Housing laboratory mice in a natural environment uncovers genetic and environmental contributions to immune variation.

Lin, J.-D.; Devlin, J. C.; Yeung, F.; McCauley, C.; Leung, J. M.; Chen, Y.-H.; Cronkite, A.; Hansen, C.; Drake-Dunn, C.; Ruggles, K. V.; Cadwell, K.; Graham, A. L.; Loke, P.

10.1101/741470 — immunology — Posted on 2019-08-21

1117 Hierarchical Evolutionary Preferences Explain Discrepancies in Expected Utility Theory

Price, M. H.; Jones, J. H.

10.1101/081570 — evolutionary biology — Posted on 2019-08-21

1118 Field-testing olfactory ability to understand human olfactory ecology

Hoover, K. C.; Botescu, D.; Fedurek, P.; Aarts, S.; Berbesque, J. C.

10.1101/270744 — ecology — Posted on 2019-08-21

1119 Vertical sleeve gastrectomy lowers kidney SGLT2 expression in the mouse

Akalestou, E.; Lopez-Noriega, L.; Leclerc, I.; Rutter, G. A.

10.1101/741330 — physiology — Posted on 2019-08-21

1120 A Toxic RNA Catalyzes the Cellular Synthesis of Its Own Inhibitor, Shunting It to Endogenous Decay Pathways

Benhamou, R. I.; Angelbello, A. J.; Wang, E. T.; Disney, M.

10.1101/741926 — neuroscience — Posted on 2019-08-21

1121 Evoked and spontaneous pain assessment during tooth pulp injury

Rossi, H. L.; See, L. P.; Foster, W.; Pitake, S.; Gibbs, J.; Schmidt, B.; Mitchell, C. H.; Abdus-Saboor, I.

10.1101/742049 — neuroscience — Posted on 2019-08-21

1122 Low-frequency Neural Activity Reflects Rule-based Chunking during Speech Listening

Ding, N.; Peiqing, J.

10.1101/742585 — neuroscience — Posted on 2019-08-21

1123 Depolarizing GABA Transmission Restrains Activity-Dependent Glutamatergic Synapse Formation in the Developing Hippocampal Circuit

Salmon, C. K.; Pribiag, H.; Cameron, S.; Farmer, W. T.; Jones, E. V.; Mahadevan, V.; Stellwagen, D.; Woodin, M. A.; Murai, K. K.

10.1101/742148 — neuroscience — Posted on 2019-08-21

1124 Leveraging shared connectivity to aggregate heterogeneous datasets into a common response space

Nastase, S. A.; Liu, Y.-F.; Hillman, H.; Norman, K. A.; Hasson, U.

10.1101/741975 — neuroscience — Posted on 2019-08-21

1125 Optimising network modelling methods for fMRI

Pervaiz, U.; Vidaurre, D.; Woolrich, M. W.; Smith, S. M.

10.1101/741595 — neuroscience — Posted on 2019-08-21

1126 Synaptic and intrinsic plasticity coordinate spike output in cerebellar Purkinje cells

Shim, H. G.; Kim, S. J.

10.1101/742577 — neuroscience — Posted on 2019-08-21

1127 Distinct structure-function relationships across cortical regions and connectivity scales in the rat brain

Straathof, M.; Sinke, M. R. T.; Roelofs, T. J. M.; Blezer, E. L. A.; Sarabdjitsingh, R. A.; van der Toorn, A.; Schmitt, O.; Otte, W. M.; Dijkhuizen, R. M.

10.1101/742833 — neuroscience — Posted on 2019-08-21

1128 Staging Alzheimer’s disease in the brain and retina of B6.APP/PS1 mice by transcriptional profiling

Howell, G.; Chintapaludi, S.; Uyar, A.; Jackson, H.; Acklin, C.; Wang, X.; Sasner, M.; Carter, G. W.

10.1101/741421 — neuroscience — Posted on 2019-08-21

1129 The CMU Array. A 3D Nano-Printed, Fully Customizable Ultra-High-Density Microelectrode Array

Saleh, M. S.; Ritchie, S.; Nicholas, M. A.; Bezbaruah, R.; Panat, R.; Yttri, E. A.

10.1101/742346 — neuroscience — Posted on 2019-08-21

1130 The temporal structure of the inner retina at a single glance

Zhao, Z.; Klindt, D.; Maia Chagas, A.; Szatko, K. P.; Rogerson, L. E.; Protti, D.; Behrens, C.; Dalkara, D.; Schubert, T.; Bethge, M.; Franke, K.; Berens, P.; Ecker, A. S.; Euler, T.

10.1101/743047 — neuroscience — Posted on 2019-08-21

1131 A psychometric evaluation of the 12-item EPQ-R neuroticism scale in 384,183 UK Biobank participants using item response theory (IRT)

Bauermeister, S.; Gallacher, J. E. J.

10.1101/741249 — neuroscience — Posted on 2019-08-21

1132 A new knockdown resistance (kdr) mutation F1534L in Aedes aegypti associated with insecticide resistance

Kushwah, R. B. S.; Kaur, T.; Dykes, C. L.; Kumar, R. H.; Kapoor, N.; Singh, O. P.

10.1101/740829 — molecular biology — Posted on 2019-08-21

1133 Global adaptation confounds the search for local adaptation

Booker, T. R.; Yeaman, S.; Whitlock, M. C.

10.1101/742247 — evolutionary biology — Posted on 2019-08-21

1134 A single-cell transcriptomics CRISPR-activation screen identifies new epigenetic regulators of zygotic genome activation

Alda-Catalinas, C.; Bredikhin, D.; Hernando-Herraez, I.; Kubinyecz, O.; Santos, F.; Eckersley-Maslin, M. A.; Stegle, O.; Reik, W.

10.1101/741371 — developmental biology — Posted on 2019-08-21

1135 Transient primary cilia mediate robust Hedgehog pathway-dependent cell cycle control

Ho, E. K.; Tsai, A. E.; Stearns, T.

10.1101/741769 — cell biology — Posted on 2019-08-21

1136 Mg2+ Impacts the Twister Ribozyme through Push-Pull Stabilization of Non-Sequential Phosphate Pairs

Kognole, A.; MacKerell, A.

10.1101/742940 — biophysics — Posted on 2019-08-21

1137 Automated Quantification of Enlarged Perivascular Spaces in Clinical Brain MRI across Sites

Dubost, F.; Duennwald, M.; Huff, D.; Scheumann, V.; Schreiber, F.; Vernooij, M.; Niessen, W.; Skalej, M.; Schreiber, S.; Oeltze-Jafra, S.; de Bruijne, M.

10.1101/738955 — neuroscience — Posted on 2019-08-21

1138 Bellymount enables longitudinal, intravital imaging of abdominal organs and the gut microbiota in adult Drosophila

Koyama, L. A. J.; Aranda-Diaz, A.; Su, Y.-H.; Balachandra, S.; Martin, J. L.; Ludington, W. B.; Huang, K. C.; O'Brien, L. E.

10.1101/741991 — developmental biology — Posted on 2019-08-21

1139 MACS: A Novel Concept for High-Magnification Imaging of Stretch-Activated Cells Reveals Divergent Nuclear Behavior to Different Levels of Strain

Seelbinder, B.; Scott, A.; Nelson, I.; Schneider, S. E.; Calahan, K.; Neu, C.

10.1101/742130 — cell biology — Posted on 2019-08-21

1140 In vivo characterisation of endogenous cardiovascular extracellular vesicles in larval and adult zebrafish

Scott, A.; Sueiro Ballesteros, L.; Bradshaw, M.; Power, A.; Love, J.; Paul, D.; Herman, A.; Emanueli, C.; Richardson, R. J.

10.1101/742692 — cell biology — Posted on 2019-08-21

1141 Accurate and Efficient Cell Lineage Tree Inference from Noisy Single Cell Data: the Maximum Likelihood Perfect Phylogeny Approach

Wu, Y.

10.1101/742395 — bioinformatics — Posted on 2019-08-21

1142 Human plasma-like medium improves T lymphocyte activation

Leney-Greene, M. A.; Boddapati, A. K.; Su, H.; Cantor, J.; Lenardo, M. J.

10.1101/740845 — immunology — Posted on 2019-08-21

1143 Site-specific ubiquitination of the E3 ligase HOIP regulates cell death and immune signaling

Fennell, L. M.; Deszcz, L.; Schleiffer, A.; Mechtler, K.; Kavirayani, A.; Ikeda, F.

10.1101/742544 — cell biology — Posted on 2019-08-21

1144 The future of peptide-centric Data-Independent Acquisition is predicted

Van Puyvelde, B.; Willems, S.; Gabriels, R.; Daled, S.; De Clerck, L.; Staes, A.; Vande Casteele, S.; Impens, F.; Deforce, D.; Martens, L.; Degroeve, S.; Dhaenens, M.

10.1101/681429 — bioinformatics — Posted on 2019-08-21

1145 Topographic somatosensory imagery for real-time fMRI Brain-Computer Interfacing

Kaas, A. L.; Valente, G.; Goebel, R.; Sorger, B.

10.1101/296640 — neuroscience — Posted on 2019-08-21

1146 A universal reporter cell line for bioactivity evaluation of engineered cytokine products

Mock, J. C.; Pellegrino, C. E.; Neri, D.

10.1101/739987 — immunology — Posted on 2019-08-21

1147 Decoding across sensory modalities reveals common supramodal signatures of conscious perception

Sanchez, G.; Hartmann, T.; Fusca, M.; Demarchi, G.; Weisz, N.

10.1101/115535 — neuroscience — Posted on 2019-08-21

1148 Genomic characterization of Vibrio parahaemolyticus from Pacific white shrimp and rearing water in Malaysia reveals novel sequence types and structural variation in genomic regions containing the Photorhabdus insect-related (Pir) toxin-like genes

Yan, C. Z. Y.; Austin, C. M.; Ayub, Q.; Rahman, S.; Gan, H. M.

10.1101/714626 — microbiology — Posted on 2019-08-21

1149 Context-dependent dynamics lead to the assembly of functionally distinct pitcher-plant microbiomes

Bittleston, L. S.; Gralka, M.; Leventhal, G. E.; Mizrahi, I.; Cordero, O. X.

10.1101/727701 — ecology — Posted on 2019-08-21

1150 Determining epitope specificity of T cell receptors with TCRGP

Jokinen, E.; Huuhtanen, J.; Mustjoki, S.; Heinonen, M.; Lähdesmäki, H.

10.1101/542332 — bioinformatics — Posted on 2019-08-21

1151 The relation between crosstalk and gene regulation form revisited

Grah, R.; Friedlander, T.

10.1101/372672 — systems biology — Posted on 2019-08-21

1152 Human motor fatigability as evoked by repetitive movements results from a gradual breakdown of surround inhibition

Baechinger, M.; Lehner, R.; Thomas, F.; Hanimann, S.; Balsters, J. H.; Wenderoth, N.

10.1101/569608 — neuroscience — Posted on 2019-08-21

1153 Small molecules for modulating protein driven liquid-liquid phase separation in treating neurodegenerative disease

Wheeler, R. J.; Lee, H. O.; Poser, I.; Pal, A.; Doeleman, T.; Kishigami, S.; Kour, S.; Anderson, E. N.; Marrone, L.; Murthy, A. C.; Jahnel, M.; Zhang, X.; Boczek, E.; Fritsch, A.; Fawzi, N. L.; Sterneckert, J.; Pandey, U.; David, D. C.; Davis, B. G.; Baldwin, A. J.; Hermann, A.; Bickle, M.; Alberti, S.; Hyman, A. A.

10.1101/721001 — cell biology — Posted on 2019-08-21

1154 Nucleated transcriptional condensates amplify gene expression

Wei, M.-T.; Chang, Y.-C.; Shimobayashi, S. F.; Shin, Y.; Brangwynne, C. P.

10.1101/737387 — biophysics — Posted on 2019-08-21

1155 A case of mistaken identity: structurally similar ligand inhibits Thymidylate Kinase causing reversible filamentation of E. coli

Bhattacharyya, S.; Bershtein, S.; ADKAR, B. V.; Woodard, J.; Shakhnovich, E.

10.1101/738823 — microbiology — Posted on 2019-08-21

1156 FinDonor 10 000 study: A cohort to identify iron depletion and factors affecting it in Finnish blood donors

Lobier, M.; Niittymaki, P.; Nikiforow, N.; Palokangas, E.; Larjo, A.; Mattila, P.; Castren, J.; Partanen, J.; Arvas, M.

10.1101/507665 — epidemiology — Posted on 2019-08-21

1157 LIN28B-PDZ Binding Kinase Signaling Promotes Neuroblastoma Metastasis

Chen, D.; Cox, J.; Annam, J.; Weingart, M.; Essien, G.; Rathi, K. S.; Rokita, J. L.; Khurana, P.; Cuya, S. M.; Bosse, K. R.; Pilgrim, A.; Li, D.; Maris, J. M.; Schnepp, R. W.

10.1101/742262 — cancer biology — Posted on 2019-08-21

1158 A curated database reveals trends in single cell transcriptomics

Svensson, V.; da Veiga Beltrame, E.

10.1101/742304 — genomics — Posted on 2019-08-21

1159 THE C99 FRAGMENT OF APP REGULATES CHOLESTEROL TRAFFICKING

Area-Gomez, E.; Pera, M.; Larrea, D.; Montesinos, J.; Guardia-Laguarta, C.; Agrawal, R. R.; Velasco, K. R.; Xu, Y.; Koo, S. Y.; Snead, A. M.; Sproul, A. A.

10.1101/740670 — molecular biology — Posted on 2019-08-21

1160 Inherited chromosomally integrated HHV-6 demonstrates tissue-specific RNA expression in vivo that correlates with increased antibody immune response.

Peddu, V.; Dubuc, I.; Gravel, A.; Xie, H.; Huang, M.; Tenenbaum, D.; Jerome, K.; Tardif, J.-C.; Dube, M.-P.; Flamand, L.; Greninger, A. L.

10.1101/741025 — genomics — Posted on 2019-08-21

1161 A new lineage of segmented RNA viruses infecting animals

Obbard, D. J.; Shi, M.; Roberts, K. E.; Longdon, B. E.; Dennis, A. B.

10.1101/741645 — evolutionary biology — Posted on 2019-08-21

1162 m6A methylation potentiates cytosolic dsDNA recognition in a sequence-specific manner

Balzarolo, M.; Engels, S.; de jong, A.; Franke, K.; van den Berg, T. K.; Janssen, E. M.; van Steensel, B.; Wolkers, M.

10.1101/742072 — immunology — Posted on 2019-08-21

1163 Mannose receptor is a restriction factor of HIV in macrophages and is counteracted by the accessory protein Vpr

Lubow, J.; Collins, D. R.; Mashiba, M.; Peterson, B. G.; Virgilio, M.; Collins, K. L.

10.1101/742197 — immunology — Posted on 2019-08-21

1164 Direct Observation of a Coil-to-Helix Contraction Triggered by Vinculin Binding to Talin

Tapia-Rojo, R.; Alonso-Caballero, A.; Fernandez, J. M.

10.1101/741884 — biophysics — Posted on 2019-08-21

1165 GLAMbox: A Python toolbox for investigating the association between gaze allocation and decision behaviour

Molter, F.; Thomas, A. W.; Heekeren, H. R.; Mohr, P. N.

10.1101/741678 — neuroscience — Posted on 2019-08-21

1166 Earth-Gravity Congruent Motion Benefits Visual Gain For Parabolic Trajectories

Jorges, B.; Lopez-Moliner, J.

10.1101/547497 — neuroscience — Posted on 2019-08-21

1167 Assessing digital phenotyping to enhance genetic studies of human diseases

DeBoever, C.; Tanigawa, Y.; Aguirre, M.; McInnes, G. M.; Lavertu, A.; Rivas, M. A.

10.1101/738856 — genetics — Posted on 2019-08-21

1168 Prediction of drug-target binding affinity using graph neural networks

Nguyen, T.; Le, H.; Le, T.; Venkatesh, S.

10.1101/684662 — bioinformatics — Posted on 2019-08-21

1169 Cell-to-cell variation in defective virus expression and effects on host responses during influenza virus infection

Wang, C.; Forst, C. V.; Chou, T.-w.; Geber, A.; Wang, M.; Hamou, W.; Smith, M.; Sebra, R.; Zhang, B.; Zhou, B.; Ghedin, E.

10.1101/487785 — microbiology — Posted on 2019-08-21

1170 Gene expression plasticity and frontloading promote thermotolerance in Pocillopora corals

Brener-Raffalli, K.; Vidal-Dupiol, J.; Adjeroud, M.; Rey, O.; Romans, P.; Bonhomme, F.; Pratlong, M.; Haguenauer, A.; Pillot, R.; Feuillassier, L.; Claereboudt, M.; Magalon, H.; Gelin, P.; Pontarotti, P.; Aurelle, D.; Mitta, G.; Toulza, E.

10.1101/398602 — evolutionary biology — Posted on 2019-08-21

1171 Post-translational modifications of Drosophila melanogaster HOX protein, Sex combs reduced

Banerjee, A.; Percival-Smith, A.

10.1101/512962 — biochemistry — Posted on 2019-08-21

1172 Predictability changes what we remember in familiar temporal contexts

Kim, H.; Schlichting, M. L.; Preston, A. R.; Lewis-Peacock, J. A.

10.1101/469965 — neuroscience — Posted on 2019-08-21

1173 Healthcare professionals and students awareness of Chagas disease: design and validation of ChaLKS (Chagas Level of Knowledge Scale)

Navarro, M.; Ramos-Rincon, J. M.; Mira-Solves, J. J.; Ramos-Sesma, V.; Torrus-Tendero, D.; Llenas-Garcia, J.

10.1101/741488 — scientific communication and education — Posted on 2019-08-20

1174 Resident microbial communities inhibit growth and antibiotic resistance evolution of Escherichia coli in human gut microbiome samples

Baumgartner, M.; Bayer, F.; Buckling, A.; Hall, A. R.

10.1101/741439 — microbiology — Posted on 2019-08-20

1175 Chromatin 3D structure reconstruction with consideration of adjacency relationship among genomic loci

Li, F.-Z.; Liu, Z.-E.; Li, X.-Y.; Bu, L.-M.; Bu, H.-X.; Liu, H.; Zhang, C.-M.

10.1101/741447 — bioinformatics — Posted on 2019-08-20

1176 First eight residues of apolipoprotein A-I mediate the C-terminus control of helical bundle unfolding and its lipidation

Brubaker, G.; Lorkowski, S. W.; Gulshan, K.; Hazen, S. L.; Gogonea, V.; Smith, J. D.

10.1101/741546 — biochemistry — Posted on 2019-08-20

1177 Embryonic and foetal expression patterns of the ciliopathy gene CEP164

Devlin, L. A.; Ramsbottom, S. A.; Overman, L. M.; Lisgo, S.; Clowry, G.; Molinari, E.; Miles, C. G.; Sayer, J. A.

10.1101/741538 — genetics — Posted on 2019-08-20

1178 Predicting 30-day Hospital Readmissions Using Artificial Neural Networks with Medical Code Embedding

Nallamothu, B.; Liu, W.; Singh, K.; Ryan, A.; Sukul, D.; Mahmoudi, E.; Waljee, A.; Stansbury, C.; Zhu, J.

10.1101/741504 — bioinformatics — Posted on 2019-08-20

1179 First analysis of behavioural responses of humpback whales (Megaptera novaeangliae) to two acoustic alarms in a northern feeding ground off Iceland

Basran, C. J.; Woelfing, B.; Neumann, C.; Rasmussen, M. H.

10.1101/741553 — animal behavior and cognition — Posted on 2019-08-20

1180 Responses of the putative trachoma vector, Musca sorbens, to volatile semiochemicals from human faeces

Robinson, A.; Bristow, J.; Holl, M. V.; Makalo, P.; Alemayehu, W.; Bailey, R. L.; McLeod, D.; Birkett, M. A.; Caulfield, J. C.; Sarah, V.; Pickett, J. A.; Dewhirst, S.; Chen-Hussey, V.; Woodcock, C.; D'Alessandro, U.; Burton, M. J.; Last, A.; Lindsay, S. W.; Logan, J. G.

10.1101/741496 — ecology — Posted on 2019-08-20

1181 Multi-State Design of Flexible Proteins Predicts Sequences Optimal for Conformational Change

Sauer, M. F.; Sevy, A. M.; Crowe, J. E.; Meiler, J.

10.1101/741454 — biophysics — Posted on 2019-08-20

1182 Diffuse Reflectance Spectroscopy reveals heat stress-induced changes in hemoglobin profile in chicken breast

Rajaram, N.; Dadgar, S.; Greene, E.; Dhamad, A.; Mallmann, B.; Dridi, S.

10.1101/741520 — bioengineering — Posted on 2019-08-20

1183 Immunity conferred by drug-cured experimental Trypanosoma cruzi infections is long-lasting and cross-strain protective

Mann, G. S.; Francisco, A. F.; Jayawardhana, S.; Taylor, M. C.; Lewis, M. D.; Olmo, F.; de Freitas, E. O.; Leoratti, F. M. S.; Lopez-Camacho, C.; Reyes-Sandoval, A.; Kelly, J.

10.1101/741462 — immunology — Posted on 2019-08-20

1184 Protocol development for discovery of angiogenesis inhibitors via automated methods using zebrafish

Mauro, A.; Ng, R.; Li, J. Y.; Guan, R.; Wang, Y.; Singh, K. K.; Wen, X.-Y.

10.1101/739854 — developmental biology — Posted on 2019-08-20

1185 Interplay between metrical and semantic processing in French: an N400 study.

te Rietmolen, N.; El Yagoubi, R.; Astesano, C.

10.1101/738930 — neuroscience — Posted on 2019-08-20

1186 GABAA receptors are selectively expressed in NG2 glia of the cerebellar white matter

Labrada-Moncada, E.; Reyes-Haro, D.; Martinez-Torres, A.

10.1101/741140 — neuroscience — Posted on 2019-08-20

1187 Neuronal activity triggers uptake of hematopoietic extracellular vesicles in vivo

Kur, I.-M.; Prouvot, P.-H.; Fu, T.; Fan, W.; Mueller-Braun, F.; Das, A.; Das, S.; Deller, T.; Roeper, J.; Stroh, A.; Momma, S.

10.1101/735670 — neuroscience — Posted on 2019-08-20

1188 Motion Coherence and Luminance Contrast Interact in Driving Visual Gamma-Band Activity

Pellegrini, F.; Hawellek, D. J.; Pape, A.-A.; Hipp, J. F.; Siegel, M.

10.1101/741066 — neuroscience — Posted on 2019-08-20

1189 Epigenetic mechanism of carbohydrate sulfotransferase 3 (CHST3) downregulation in the aging brain

Baidoe-Ansah, D.; Sakib, M. S.; Jia, S.; Fischer, A.; Kaushik, R.; Dityatev, A.

10.1101/741355 — neuroscience — Posted on 2019-08-20

1190 Unit quaternion description of spatial rotation in 3D electron cryo-microscopy

Hu, M.; Zhang, Q.; Yang, J.; Li, X.

10.1101/733881 — biophysics — Posted on 2019-08-20

1191 Distinct features of nucleolus-associated domains in mouse embryonic stem cells

Bizhanova, A.; Yan, A.; Yu, J.; Zhu, L. J.; Kaufman, P. D.

10.1101/740480 — genomics — Posted on 2019-08-20

1192 WhichTF is dominant in your open chromatin data?

Tanigawa, Y.; Dyer, E. S.; Bejerano, G.

10.1101/730200 — genomics — Posted on 2019-08-20

1193 perfectphyloR: An R package for reconstructing perfect phylogenies

Karunarathna, C. B.; Graham, J.

10.1101/674523 — genetics — Posted on 2019-08-20

1194 Oxamniquine resistance alleles are widespread in Old World Schistosoma mansoni and predate drug deployment

Chevalier, F.; Le Clec'h, W.; McDew-White, M.; Menon, V.; Guzman, M. A.; Holloway, S. P.; Cao, X.; Taylor, A. B.; Kinung'hi, S.; Gouvras, A. N.; Webster, B. L.; Webster, J. P.; Emery, A. M.; Rollinson, D.; Garba Djirmay, A.; Al Mashikhi, K. M.; Al Yafae, S.; Idris, M. A.; Mone, H.; Mouahid, G.; Hart, P. J.; LoVerde, P. T.; Anderson, T. J.

10.1101/657056 — evolutionary biology — Posted on 2019-08-20

1195 Progressive recruitment of distal MEC-4 channels determines touch response strength in C. elegans

Katta, S.; Sanzeni, A.; Das, A.; Vergassola, M.; Goodman, M. B.

10.1101/587014 — neuroscience — Posted on 2019-08-20

1196 Identification and characterization of novel filament-forming proteins in cyanobacteria

Springstein, B. L.; Woehle, C.; Weissenbach, J.; Helbig, A. O.; Dagan, T.; Stucken, K.

10.1101/674176 — microbiology — Posted on 2019-08-20

1197 Skeletal muscles that actuate sexual displays are specialized for de novo androgen synthesis

Schuppe, E.; Goller, F.; Fuxjager, M.

10.1101/740720 — physiology — Posted on 2019-08-20

1198 fMRI detects bilateral brain network activation following unilateral chemogenetic activation of direct striatal projection neurons

Nakamura, Y.; Nakamura, Y.; Pelosi, A.; Djemai, B.; Debacker, C.; Herve, D.; Girault, J.-A.; Tsurugizawa, T.

10.1101/741710 — neuroscience — Posted on 2019-08-20

1199 Home-cage Monitoring Ascertains Signatures of Ictal and Interictal Behavior In Mouse Models of Generalized Seizures

Jankovic, M. J.; Kapadia, P. P.; Krishnan, V.

10.1101/740407 — neuroscience — Posted on 2019-08-20

1200 Anaerobic degradation of syringic acid by an adapted strain of Rhodopseudomonas palustris

Oshlag, J. Z.; Ma, Y.; Morse, K.; Burger, B. T.; Lemke, R. A.; Karlen, S. D.; Myers, K.; Donohue, T. J.; Noguera, D. R.

10.1101/740985 — microbiology — Posted on 2019-08-20

1201 Molecular characteristics of chronic hepatitis B virus infection among voluntary blood donors in Kinshasa, Democratic Republic of the Congo

Maindo, P. M.; Mudwahefa, D. A.; Mukendi, J.-P. K.; Yuma, S. R.; Muwonga, J. M.; Misinzo, G.

10.1101/740803 — microbiology — Posted on 2019-08-20

1202 Patterns of genetic variability in genomic regions with low rates of recombination

Becher, H.; Jackson, B. C.; Charlesworth, B.

10.1101/739888 — evolutionary biology — Posted on 2019-08-20

1203 Gene networks and expression quantitative trait loci associated with platinum-based chemotherapy response in high-grade serous ovarian cancer

Choi, J.; Tarnouskaya, A.; Nesdoly, S.; Topouza, D. G.; Koti, M.; Duan, Q.

10.1101/740696 — cancer biology — Posted on 2019-08-20

1204 Metadata-Guided Visual Representation Learning for Biomedical Images

Spiegel, S.; Hossain, I.; Ball, C.; Zhang, X.

10.1101/725754 — bioinformatics — Posted on 2019-08-20

1205 Phosphoproteomics reveals that the hVPS34 regulated SGK3 kinase specifically phosphorylates endosomal proteins including Syntaxin-7, Syntaxin-12, RFIP4 and WDR44

Malik, N.; Nirujogi, R. S.; Peltier, J.; Macartney, T.; Wightman, M.; Prescott, A. R.; Gourlay, R.; Trost, M.; Alessi, D. R.; Karapetsas, A.

10.1101/741652 — biochemistry — Posted on 2019-08-20

1206 SNP-based quantitative deconvolution of biological mixtures: application to the detection of cows with subclinical mastitis by whole genome sequencing of tank milk.

Coppieters, W.; Karim, L.; Georges, M.

10.1101/740894 — genomics — Posted on 2019-08-20

1207 Impact of white spotting alleles, including W20, on phenotype in the American Paint Horse

Brooks, S.; Palermo, K.; Kahn, A.; Hein, J.

10.1101/678052 — genetics — Posted on 2019-08-20

1208 Supporting evidence for DNA shearing as a mechanism for origin unwinding in eukaryotes

Langston, L. D.; Georgescu, R.; O'Donnell, M. E.

10.1101/739557 — biochemistry — Posted on 2019-08-20

1209 Cryptococcus neoformans evades pulmonary immunity by modulating xylose transport

Li, L. X.; Hole, C. R.; Rangel-Moreno, J.; Khader, S. A.; Doering, T. L.

10.1101/741017 — microbiology — Posted on 2019-08-20

1210 Wnt11/Fzd7 signaling compartmentalizes AKAP2/PKA to regulate L-type Ca2+ channel

Csalyi, K. D.; Rharass, T.; Schulz, M.; Phan, M. H.; Wakula, P.; Mhatre, K. N.; Plotnick, D.; Werdich, A. A.; Zauber, H.; Sury, M. D.; Selbach, M.; Heinzel, F. R.; Klussmann, E.; Panakova, D.

10.1101/741637 — developmental biology — Posted on 2019-08-20

1211 Increased Nitrogen Fixation and Remobilization May Contribute to Higher Seed Protein Without a Yield Penalty in a Soybean Introgression Line

Locke, A. M.; Ramirez, M. E.

10.1101/602748 — plant biology — Posted on 2019-08-20

1212 Neuromuscular fatigue and recovery after strenuous exercise depends on skeletal muscle size and stem cell characteristics

Baumert, P.; Temple, S.; Stanley, M. J.; Cocks, M.; Strauss, J. A.; Shepherd, S. O.; Drust, B.; Lake, M. J.; Stewart, C. E.; Erskine, R. M.

10.1101/740266 — physiology — Posted on 2019-08-20

1213 GLAMbox: A Python toolbox for investigating the association between gaze allocation and decision behaviour

Molter, F.; Thomas, A. W.; Heekeren, H. R.; Mohr, P. N.

10.1101/741678 — neuroscience — Posted on 2019-08-20

1214 A potential cortical precursor of visual word form recognition in untrained monkeys

Rajalingham, R.; Kar, K.; Sanghavi, S.; Dehaene, S.; DiCarlo, J. J.

10.1101/739649 — neuroscience — Posted on 2019-08-20

1215 Mnemonic prediction errors bias hippocampal states

Bein, O.; Duncan, K.; Davachi, L.

10.1101/740563 — neuroscience — Posted on 2019-08-20

1216 The Plasmodium falciparum protein VCAP1 controls Maurer’s cleft morphology, knob architecture and PfEMP1 trafficking

McHugh, E.; Carmo, O.; Blanch, A.; Looker, O.; Liu, B.; Tiash, S.; Batinovic, S.; Low J.Y, A.; McMillan, P.; Tilley, L.; Dixon, M.

10.1101/741033 — microbiology — Posted on 2019-08-20

1217 Divergence from conserved residues underlies intracellular retention of mammalian odorant receptors

Ikegami, K.; de March, C. A.; Nagai, M.; Ghosh, S.; Do, M.; Sharma, R.; Bruguera, E.; Lu, Y.; Fukutani, Y.; Vaidehi, N.; Yohda, M.; Matsunami, H.

10.1101/605337 — cell biology — Posted on 2019-08-20

1218 Structural Basis of H2B Ubiquitination-Dependent H3K4 Methylation by COMPASS

Hsu, P. L.; Shi, H.; Leonen, C.; Kang, J.; Chatterjee, C.; Zheng, N.

10.1101/740738 — biochemistry — Posted on 2019-08-20

1219 A universal reporter cell line for bioactivity evaluation of engineered cytokine products

Mock, J. C.; Pellegrino, C. E.; Neri, D.

10.1101/739987 — immunology — Posted on 2019-08-20

1220 Evolution of p38 MAP Kinases in Drosophila

Ryan, S. M.; Wildman, K.; Oceguera-Perez, B.; Barbee, S.; Mortimer, N. T.; Vrailas-Mortimer, A.

10.1101/735126 — evolutionary biology — Posted on 2019-08-20

1221 Lack of phenotypic variation in larval utilization of pea aphids in populations of the ladybeetle Hippodamia convergens

Grenier, C.; Summerhays, B.; Cartmill, R.; Martinez, T.; Saisho, R.; Rothenberg, A.; Scott, J.; Obrycki, J.; Sethuraman, A.

10.1101/740506 — ecology — Posted on 2019-08-20

1222 A functionally, structurally, and evolutionarily distinct set of genes are linked to phenome wide variation in maize

Liang, Z.; Qiu, Y.; Schnable, J.

10.1101/534503 — bioinformatics — Posted on 2019-08-20

1223 Effect of Testosterone on Antler Growth in Male Sambar Deer (Rusaunicolor unicolor) in Horton Plains National Park, Sri Lanka.

Weerasekera, D. S.; Rathnasekara, N. L.; Nanayakkara, D. K. K.; Herath, H. M. S. S.; Perera, S. J.; Ranawana, K. B.

10.1101/740936 — zoology — Posted on 2019-08-20

1224 DropSynth 2.0: high-fidelity multiplexed gene synthesis in emulsions

Sidore, A. M.; Plesa, C.; Samson, J. A.; Kosuri, S.

10.1101/740977 — synthetic biology — Posted on 2019-08-20

1225 A modular cloning toolkit for genome editing in plants

Hahn, F.; Korolev, A.; Sanjurjo Loures, L.; Nekrasov, V.

10.1101/738021 — plant biology — Posted on 2019-08-20

1226 Human Neocortical Neurosolver (HNN): A new software tool for interpreting the cellular and network origin of human MEG/EEG data

Neymotin, S. A.; Daniels, D. S.; Caldwell, B.; McDougal, R. A.; Carnevale, N. T.; Moore, C. I.; Hines, M. L.; Hamalainen, M.; Jones, S. R.

10.1101/740597 — neuroscience — Posted on 2019-08-20

1227 Selective enhancement of object representations through multisensory integration

Tovar, D. A.; Murray, M. M.; Wallace, M. T.

10.1101/740555 — neuroscience — Posted on 2019-08-20

1228 Genomic sequencing of Phyllosticta citriasiana provide insight into its conservation and diversification with closely related Phyllosticta species associated with citrus

Wang, M.; Liu, B.; Ruan, R.; Zeng, Y.; Luo, J.; Li, H.

10.1101/740852 — genomics — Posted on 2019-08-20

1229 Massive parallel variant characterization identifies NUDT15 alleles associated with thiopurine toxicity

Suiter, C. C.; Moriyama, T.; Matreyek, K. A.; Yang, W.; Scaletti, E. R.; Nishii, R.; Yang, W.; Hoshitsuki, K.; Singh, M.; Trehan, A.; Parish, C.; Smith, C.; Bhojwani, D.; Yuen, L. Y.; Li, C.-k.; Li, C.-h.; Yang, Y.-l.; Walker, G. J.; Goodhand, J. R.; Kennedy, N. A.; Klussmann, F. A.; Bhatia, S.; Relling, M. V.; Kato, M.; Hori, H.; Bhatia, P.; Ahmad, T.; Yoeh, A. E. J.; Stenmark, P.; Fowler, D. M.; Yang, J. J.

10.1101/740837 — genomics — Posted on 2019-08-20

1230 Evolutionary rescue is determined by differential selection on demographic rates and density dependence.

Vinton, A. C.; Vasseur, D. A.

10.1101/740365 — ecology — Posted on 2019-08-20

1231 Error, noise and bias in de novo transcriptome assemblies

Freedman, A. H.; Clamp, M.; Sackton, T. B.

10.1101/585745 — bioinformatics — Posted on 2019-08-20

1232 Social interactions drive efficient foraging and income equality in groups of fish

Harpaz, R.; Schneidman, E.

10.1101/740886 — animal behavior and cognition — Posted on 2019-08-20

1233 Synthetic cassettes for pH-mediated sensing, counting and containment

Stirling, F.; Naydich, A.; Bramante, J.; Barocio, R.; Certo, M.; Wellington, H.; Redfield, E.; O'Keefe, S.; Gao, S.; Cusolito, A.; Way, J.; Silver, P. A.

10.1101/740902 — synthetic biology — Posted on 2019-08-20

1234 Topology-Dependent Interference of Circuit Function by Growth Feedback

Zhang, R.; Li, J.; Melendez-Alvarez, J.; Chen, X.; Sochor, P.; Zhang, Q.; Goetz, H.; Ding, T.; Wang, X.; Tian, X.-J.

10.1101/724906 — synthetic biology — Posted on 2019-08-20

1235 Agronomic, physiological and molecular characterization of rice mutants revealed key role of ROS and catalase in high temperature stress tolerance

Zafar, S. A.; Hameed, A.; Ashraf, M.; Khan, A. S.; Qamar, Z. u.; Li, X.; Siddique, K. H. M.

10.1101/739433 — physiology — Posted on 2019-08-20

1236 An advantage for targets located horizontally to the cued location

Clevenger, J.; Yang, P.-L.; Beck, D. M.

10.1101/740712 — neuroscience — Posted on 2019-08-20

1237 Learning in anticipation of reward and punishment: Perspectives across the human lifespan

Betts, M. J.; Richter, A.; de Boer, L.; Tegelbeckers, J.; Perosa, V.; Chowdhury, R.; Dolan, R.; Seidenbecher, C.; Schott, B. H.; Duezel, E.; Guitart-Masip, M.; Krauel, K.

10.1101/738211 — neuroscience — Posted on 2019-08-20

1238 Trading Genome Vulnerability for Stable Genetic Inheritance: Active Retrotransposons Help Maintain Pericentromeric Heterochromatin Required for Faithful Cell Division

Hao, Y.; Wang, D.; Wu, S.; Li, X.; Shao, C.; Zhang, P.; Chen, J.-Y.; Lim, D.-H.; Fu, X.-D.; He, S.; Chen, R.

10.1101/740753 — genomics — Posted on 2019-08-20

1239 Familial relationships in electronic health records (EHR) v2

Liu, Z.; Tatonetti, N.

10.1101/731976 — genetics — Posted on 2019-08-20

1240 Bayesian semi-nonnegative matrix tri-factorization to identify pathways associated with cancer phenotypes

Park, S.; Kar, N.; Cheong, J.-H.; Hwang, T. H.

10.1101/739110 — bioinformatics — Posted on 2019-08-20

1241 Protein dynamics regulate distinct biochemical properties of cryptochromes in mammalian circadian rhythms

Fribourgh, J. L.; Srivastava, A.; Sandate, C. R.; Michael, A. K.; Hsu, P. L.; Rakers, C.; Nguyen, L. T.; Torgrimson, M. R.; Parico, G. C. G.; Tripathi, S.; Zheng, N.; Lander, G. C.; Hirota, T.; Tama, F.; Partch, C. L.

10.1101/740464 — biochemistry — Posted on 2019-08-20

1242 Comparison of a GC-Orbitrap-MS with Parallel GC-FID Capabilities for Metabolomics of Human Serum

Misra, B. B.; Bassey, E.; Olivier, M.

10.1101/740795 — systems biology — Posted on 2019-08-20

1243 Symbiotic signalling is at the core of an endophytic Fusarium solani-legume association

Skiada, V.; Avramidou, M.; Bonfante, P.; Genre, A.; PAPADOPOULOU, K.

10.1101/740043 — plant biology — Posted on 2019-08-20

1244 Prescription Opioid Distribution After The Legalization Of Recreational Marijuana In Colorado, 2007-2017

Kropp Lopez, A. K.; Nichols, S. D.; Chung, D. Y.; McCall, K. L.; Piper, B. J.

10.1101/702811 — pharmacology and toxicology — Posted on 2019-08-20

1245 Bacterial cell cycle and growth phase switch by the essential transcriptional regulator CtrA

Delaby, M.; Panis, G.; Viollier, P. H.

10.1101/739516 — microbiology — Posted on 2019-08-20

1246 MutSpot: detection of non-coding mutation hotspots in cancer genomes

Guo, Y. A.; Chang, M. M.; Jacobsen Skanderup, A.

10.1101/740944 — genomics — Posted on 2019-08-20

1247 CONSTRUTION OF A GENETIC MAP OF RILs DERIVED FROM WHEAT (T. AESTIVUM L.) VARIETIES PAMYATII AZIEVA X PARAGON USING HIGH-THROUGHPUT SNP GENOTYPING PLATFORM KASP - COMPETATIVE ALLELE SPECIFIC PCR

Yermekbayev, K.; Griffiths, S.; Chhetry, M.; Waite, M. L.; Orford, S.; Amalova, A.; Abugalieva, S.; Turuspekov, Y.

10.1101/740324 — genomics — Posted on 2019-08-20

1248 Radiation-Induced DNA Damage and Repair Effects on 3D Genome Organization

Sanders, J. T.; Freeman, T. F.; Xu, Y.; Golloshi, R.; Stallard, M. A.; San Martin, R.; Balajee, A. S.; McCord, R. P.

10.1101/740704 — genomics — Posted on 2019-08-20

1249 The Impact of Genetic Background and Cell Lineage on the Level and Pattern of Position Effect Variegation

Wang, S.; Elgin, S. C.

10.1101/740951 — genetics — Posted on 2019-08-20

1250 Development and External Validation of the Acute COPD Exacerbation Prediction Tool (ACCEPT)

Adibi, A.; Sin, D. D.; Safari, A.; Johnson, K. M.; Aaron, S.; FitzGerald, J. M.; Sadatsafavi, M.

10.1101/651901 — epidemiology — Posted on 2019-08-20

1251 Ecotone formation through ecological niche construction: the role of biodiversity and species interactions

Liautaud, K.; Barbier, M.; Loreau, M.

10.1101/740282 — ecology — Posted on 2019-08-20

1252 Compaction dynamics during progenitor cell self-assembly reveal granular mechanics

Smeets, B.; Pesek, J.; Deckers, T.; Nilsson Hall, G.; Cuvelier, M.; Ongenae, S.; Bloemen, V.; Luyten, F. P.; Papantoniou, I.; Ramon, H.

10.1101/699447 — biophysics — Posted on 2019-08-20

1253 Coverage profile correction of shallow-depth circulating cell free DNA sequencing via multi-distance learning

Larson, N. B.; Larson, M. C.; Na, J.; Sosa, C. P.; Wang, C.; Rowsey, R.; Kocher, J.-P. A.

10.1101/737148 — bioinformatics — Posted on 2019-08-20

1254 An ultra-sensitive T-cell receptor detection method for TCR-Seq and RNA-Seq data

Chen, S.-Y.; Zhang, Q.; Liu, C.-J.; Guo, A.-Y.

10.1101/740340 — bioinformatics — Posted on 2019-08-20

1255 NbCycB2 represses Nbwo activity via a negative feedback loop in the tobacco trichome developmemt

Wu, M.; Cui, Y.; Ge, L.; Cui, L.; Xu, Z.; Zhang, H.; Wang, Z.; Zhou, D.; Wu, S.; Chen, L.; Cui, H.

10.1101/740126 — plant biology — Posted on 2019-08-20

1256 Real-time computation of the TMS-induced electric field in a realistic head model

Stenroos, M.; Koponen, L. M.

10.1101/547315 — neuroscience — Posted on 2019-08-20

1257 Multivariate analysis of EEG activity indexes contingent and non-contingent attentional capture

Munneke, J.; Fahrenfort, J. J.; Sutterer, D.; Theeuwes, J.; Awh, E.

10.1101/734004 — neuroscience — Posted on 2019-08-20

1258 The sodium leak channel complex is modulated by voltage and extracellular calcium

Chua, H. C.; Wulf, M.; Weidling, C.; Rasmussen, L. P.; Pless, S. A.

10.1101/740456 — neuroscience — Posted on 2019-08-20

1259 Expression of oxytocin receptors in the zebra finch brain during vocal development

Davis, M. T.; Grogan, K. E.; Maney, D. L.

10.1101/739623 — neuroscience — Posted on 2019-08-20

1260 N400: Event-Related Potentials in an Associative Word Pair Learning Paradigm

Farshad, M.; Pavlov, Y. G.; Kotchoubey, B. G.

10.1101/741728 — neuroscience — Posted on 2019-08-20

1261 TPR is required for the nuclear export of mRNAs and lncRNAs from intronless and intron-poor genes

Lee, E. S.; Wolf, E. J.; Smith, H. W.; Emili, A.; Palazzo, A. F.

10.1101/740498 — molecular biology — Posted on 2019-08-20

1262 Detection of Enterovirus D68 in wastewater samples from the United Kingdom during outbreaks reported globally between 2015 and 2018

Majumdar, M.; Wilton, T.; Hajarha, Y.; Klapsa, D.; Martin, J.

10.1101/738948 — microbiology — Posted on 2019-08-20

1263 Dissecting the factors shaping fish skin microbiomes in a heterogenous inland water system

Krotman, Y.; Yergaliyev, T.; Alexander, R. S.; Avrahami, Y.; Szitenberg, A.

10.1101/739748 — microbiology — Posted on 2019-08-20

1264 Identification of immunoreactive linear epitopes of Borrelia miyamotoi

Tokarz, R.; Tagliafierro, T.; Caciula, A.; Mishra, N.; Thakkar, R.; Chauhan, L. V.; Sameroff, S.; Delaney, S.; Wormser, G.; Marques, A. R.; Lipkin, W. I.

10.1101/741009 — microbiology — Posted on 2019-08-20

1265 External quality assessment of bacterial identification and antimicrobial susceptibility testing in African national public health laboratories, 2011-2016

Perovic, O.; Yahaya, A. A.; Viljoen, C.; Ndihokubwayo, J.-B.; Smith, M.; Coulibaly, S. O.; de Gouveia, L.; Oxenford, C. J.; Cognat, S. B. F.; Frean, J. A.

10.1101/740993 — microbiology — Posted on 2019-08-20

1266 Distinct features of nucleolus-associated domains in mouse embryonic stem cells

Bizhanova, A.; Yan, A.; Yu, J.; Zhu, L. J.; Kaufman, P. D.

10.1101/740480 — genomics — Posted on 2019-08-20

1267 Educational attainment causally impacts drinking behaviors and risk for alcohol dependence: results from a two-sample Mendelian randomization study in ~ 780,000 study participants

Rosoff, D. B.; Clarke, T.-K.; Adams, M. J.; McIntosh, A. M.; Davey Smith, G.; Jung, J.; Lohoff, F. W.

10.1101/557595 — epidemiology — Posted on 2019-08-20

1268 Stromal ISLR promotes intestinal regeneration and cancer by suppressing epithelial Hippo signaling

Xu, J.; Tang, Y.; Sheng, X.; Tian, Y.; Deng, M.; Du, S.; Lv, C.; Song, Y.; Lou, P.; Luo, Y.; Li, Y.; Zhang, B.; Chen, Y.; Liu, Z.; Cong, Y.; Plikus, M. V.; Meng, Q.; Zhou, Z.; Yu, Z.

10.1101/740472 — cancer biology — Posted on 2019-08-20

1269 Phototaxis of the dominant marine pico-eukaryote Micromonas sp.: from population to single cell

Henshaw, R. J.; Jeanneret, R.; Polin, M.

10.1101/740571 — biophysics — Posted on 2019-08-20

1270 PopDel identifies medium-size deletions jointly in tens of thousands of genomes

Roskosch, S.; Jonsson, H.; Björnsson, E.; Beyter, D.; Eggertsson, H. P.; Sulem, P.; Stefansson, K.; Halldorsson, B. V.; Kehr, B.

10.1101/740225 — bioinformatics — Posted on 2019-08-20

1271 Gene set inference from single-cell sequencing data using a hybrid of matrix factorization and variational autoencoders

Lukassen, S.; Ten, F. W.; Eils, R.; Conrad, C.

10.1101/740415 — bioinformatics — Posted on 2019-08-20

1272 Development of mouse and human cochlea at single cell resolution

Yu, K. S.; Frumm, S. M.; Park, J. S.; Lee, K. P.; Wong, D. M.; Byrnes, L. E.; Knox, S.; Sneddon, J. B.; Tward, A. D.

10.1101/739680 — bioinformatics — Posted on 2019-08-20

1273 Linking microbial communities to ecosystem functions: what we can learn from genotype-phenotype mapping in organisms

Morris, A. H.; Meyer, K. M.; Bohannan, B. J.

10.1101/740373 — ecology — Posted on 2019-08-20

1274 A supervised learning framework for chromatin loop detection in genome-wide contact maps

Salameh, T. J.; Wang, X.; Song, F.; Zhang, B.; Wright, S. M.; Khunsriraksakul, C.; Yue, F.

10.1101/739698 — bioinformatics — Posted on 2019-08-20

1275 Analysis of the effectiveness of sub-sensory electrical noise stimulation during visuomotor adaptations in different visual feedback conditions

Castronovo, A. M.; Giles Doran, C.; Holden, M.; Severini, G.

10.1101/739722 — neuroscience — Posted on 2019-08-20

1276 Variant antigen diversity in Trypanosoma vivax is not driven by recombination

Silva Pereira, S.; de Almeida Castilho Neto, K. J. G.; Duffy, C.; Richards, P.; Noyes, H.; Ogugo, M.; Andre, M. R.; Bengaly, Z.; Kemp, S.; Teixeira, M. M. G.; Machado, R. Z.; Jackson, A. P.

10.1101/733998 — microbiology — Posted on 2019-08-20

1277 Revisiting the dimensionality of biological diversity

Nakamura, G.; Goncalves, L. O.; Duarte, L.

10.1101/508002 — ecology — Posted on 2019-08-20

1278 Protein polyglutamylation catalyzed by the bacterial Calmodulin-dependent pseudokinase SidJ

Sulpizio, A.; Minelli, M. E.; Wan, M.; Burrowes, P. D.; Wu, X.; Sanford, E. J.; Shin, J.-H.; Williams, B.; Goldberg, M. L.; Smolka, M. B.; Mao, Y.

10.1101/738567 — biochemistry — Posted on 2019-08-20

1279 Representation of Borders and Swimming Kinematics in the Brain of Freely-Navigating Fish

Vinepinsky, E.; Cohen, L.; Perchik, S.; Ben-Shahar, O.; Donchin, O.; Segev, R.

10.1101/291013 — neuroscience — Posted on 2019-08-20

1280 Genome-wide identification and transcriptomic analysis of microRNAs across various amphioxus organs using deep sequencing

Zhang, Q.; Wang, H.; Zhu, Q.; Wang, X.; Li, Y.; Chen, J.; Morikawa, H.; Yang, L.; Wang, Y.

10.1101/736371 — genetics — Posted on 2019-08-20

1281 Behavioural mechanisms underlying the evolution of cooperative burrowing in Peromyscus mice

Bedford, N. L.; Weber, J. N.; Tong, W.; Baier, F.; Kam, A.; Greenberg, R. A.; Hoekstra, H. E.

10.1101/731984 — evolutionary biology — Posted on 2019-08-20

1282 Early eukaryotic origins and metazoan elaboration of MAPR family proteins

Hehenberger, E.; Eitel, M.; Fortunato, S. A. V.; Miller, D. J.; Keeling, P. J.; Cahill, M. A.

10.1101/737684 — evolutionary biology — Posted on 2019-08-20

1283 Regeneration in the absence of a blastema requires cell division but is not tied to wound healing in the ctenophore Mnemiopsis leidyi

Ramon Mateu, J.; Ellison, T.; Angelini, T. E.; Martindale, M. Q.

10.1101/509331 — developmental biology — Posted on 2019-08-20

1284 A Fast and Memory-Efficient Implementation of the Transfer Bootstrap

Lutteropp, S.; Kozlov, A. M.; Stamatakis, A.

10.1101/734848 — bioinformatics — Posted on 2019-08-20

1285 Targeted stimulation of human orbitofrontal networks disrupts outcome-guided behavior

Howard, J. D.; Reynolds, R.; Smith, D. E.; Voss, J. L.; Schoenbaum, G.; Kahnt, T.

10.1101/740399 — neuroscience — Posted on 2019-08-20

1286 Therapeutically actionable PAK4 is amplified, overexpressed and involved in bladder cancer progression

Chandrashekar, D. S.; Chakravarthi, B. V. S. K.; Robinson, A. D.; Anderson, J. C.; Agarwal, S.; Hodigere Balasubramanya, S. A.; Eich, M.-L.; Bajpai, A. K.; Davuluri, S.; Guru, M. S.; Guru, A. S.; Naik, G.; Della Manna, D. L.; Acharya, K. K.; Carskadon, S.; Manne, U.; Crossman, D. K.; Ferguson, J. E.; Grizzle, W. E.; Palanisamy, N.; Willey, C. D.; Crowley, M. R.; Netto, G. J.; Yang, E. S.; Sonpavde, G.; Varambally, S.

10.1101/740316 — cancer biology — Posted on 2019-08-20

1287 Effects of Shift-Work on the Carotid Artery and Cerebral Blood Flow of SHR Rats and WKY Rats

Wang, Y.; Zhang, T.; Zhang, Y.; Yu, Y.; Bai, F.; Zhang, H.; Chi, Y.; Gao, S.

10.1101/740068 — pathology — Posted on 2019-08-20

1288 High circulating elafin levels are associated with Crohn’s disease-associated intestinal strictures

WANG, J.; Ortiz, C.; Fontenot, L.; Xie, Y.; Ho, W.; Mattai, S. A.; Shih, D. Q.; Koon, H. W.

10.1101/739920 — molecular biology — Posted on 2019-08-20

1289 Patterns of genetic variability in genomic regions with low rates of recombination

Becher, H.; Jackson, B. C.; Charlesworth, B.

10.1101/739888 — evolutionary biology — Posted on 2019-08-20

1290 LFMD: detecting low-frequency mutations in genome sequencing data without molecular tags

Ye, R.; Ruan, J.; Zhuang, X.; Qi, Y.; An, Y.; Xu, J.; Mak, T.; Liu, X.; Zhang, X.; Yang, H.; Xu, X.; Baum, L.; Nie, C.; Sham, P. C.

10.1101/617381 — bioinformatics — Posted on 2019-08-20

1291 A potential cortical precursor of visual word form recognition in untrained monkeys

Rajalingham, R.; Kar, K.; Sanghavi, S.; Dehaene, S.; DiCarlo, J. J.

10.1101/739649 — neuroscience — Posted on 2019-08-20

1292 Forensics and DNA Barcodes - Do Identification Errors Arise in the Lab or in the Sequence Libraries?

Pentinsaari, M.; Ratnasingham, S.; Miller, S. E.; Hebert, P. D. N.

10.1101/738138 — genetics — Posted on 2019-08-20

1293 TAL1-mediated epigenetic modifications down-regulate the expression of GIMAP family in non-small cell lung cancer

Tang, Z.; Wang, L.; Dai, P.; Ruan, P.; Liu, D.; Tan, Y.

10.1101/739870 — bioinformatics — Posted on 2019-08-20

1294 How to make methodological decisions when inferring social networks

Ferreira, A. C.; Covas, R.; Silva, L. R.; Esteves, S. C.; Duarte, I.; Fortuna, R.; Theron, F.; Doutrelant, C.; Farine, D. R.

10.1101/739789 — animal behavior and cognition — Posted on 2019-08-20

1295 Simulating individually targeted transcranial electric stimulation for experimental application

Radecke, J.-O.; Khan, A.; Engel, A. K.; Wolters, C. H.; Schneider, T. R.

10.1101/739904 — neuroscience — Posted on 2019-08-20

1296 Transethnic meta-analysis of genome-wide association studies identifies three new loci and characterizes population-specific differences for coronary artery disease

Matsunaga, H.; Ito, K.; Akiyama, M.; Takahashi, A.; Koyama, S.; Nomura, S.; Ieki, H.; Ozaki, K.; Onouchi, Y.; Suna, S.; Ogishima, S.; Yamamoto, M.; Hozawa, A.; Satoh, M.; Sasaki, M.; Yamaji, T.; Sawada, N.; Iwasaki, M.; Tsugane, S.; Tanaka, K.; Arisawa, K.; Ikezaki, H.; Takashima, N.; Naito, M.; Wakai, K.; Tanaka, H.; Sakata, Y.; Morita, H.; Sakata, Y.; Matsuda, K.; Murakami, Y.; Akazawa, H.; Kubo, M.; Kamatani, Y.; Komuro, I.

10.1101/739979 — genetics — Posted on 2019-08-20

1297 Cost-free lifespan extension via optimisation of gene expression in adulthood supports the developmental theory of ageing

Lind, M. I.; Carlsson, H.; Ivimey-Cook, E.; Maklakov, A. A.

10.1101/739490 — evolutionary biology — Posted on 2019-08-20

1298 Agronomic, physiological and molecular characterization of rice mutants revealed key role of ROS and catalase in high temperature stress tolerance

Zafar, S. A.; Hameed, A.; Ashraf, M.; Khan, A. S.; Qamar, Z. u.; Siddique, K. H. M.

10.1101/739433 — physiology — Posted on 2019-08-20

1299 Preliminary findings of single session of noninvansive brain stimulation over parietal lobe and performance on spatial memory task

Colic, M. V.; Konstantinovic, U.; Bjekic, J.; Filipovic, S. R.

10.1101/736892 — neuroscience — Posted on 2019-08-20

1300 Salient images: Evidence for a component process architecture for visual imagination.

Murphy, C.; Ho, N.; Bernhardt, B.; Macrae, C. N.; Sormaz, M.; Vatansever, D.; Jefferies, E.; Smallwood, J.

10.1101/739953 — neuroscience — Posted on 2019-08-20

1301 RIP1 kinase mediates angiogenesis by modulating macrophages in experimental neovascularization

Ueta, T.; Ishihara, K.; Notomi, S.; Lee, J.-J.; Maidana, D.; Efstathiou, N.; Murakami, Y.; Hasegawa, E.; Azuma, K.; Toyono, T.; Paschalis, E.; Aihara, M.; Miller, J. W.; Vavvas, D. G.

10.1101/739599 — molecular biology — Posted on 2019-08-20

1302 A universal reporter cell line for bioactivity evaluation of engineered cytokine products

Mock, J. C.; Pellegrino, C. E.; Neri, D.

10.1101/739987 — immunology — Posted on 2019-08-20

1303 Mitochondrial sequences or Numts - By-catch differs between sequencing methods

Becher, H.; Nichols, R. A.

10.1101/739805 — evolutionary biology — Posted on 2019-08-20

1304 Chromatin activation as a unifying principle underlying pathogenic mechanisms in multiple myeloma

Ordonez, R.; Kulis, M.; Russinol, N.; Chapaprieta, V.; Beekman, R.; Meydan, C.; Duran-Ferrer, M.; Verdaguer-Dot, N.; Clot, G.; Vilarrasa-Blasi, R.; Garate, L.; Miranda, E.; Carrasco, A.; Ezponda, T.; Vilas-Zornoza, A.; Lara-Astiaso, D.; Dupere-Richer, D.; Martens, J. H.; Torrents, D.; El-Omri, H.; Taha, R. Y.; Calasanz, M. J.; Paiva, B.; San Miguel, J.; Flicek, P.; Gut, I.; Melnick, A.; Mitsiades, C. S.; Licht, J. D.; Campo, E.; Stunnenberg, H. G.; Agirre, X.; Prosper, F.; Martin-Subero, J. I.

10.1101/740027 — cancer biology — Posted on 2019-08-20

1305 ATLAS: a Snakemake workflow for assembly, annotation, and genomic binning of metagenome sequence data

Kieser, S.; Brown, J.; Zdobnov, E. M.; Trajkovski, M.; McCue, L. A.

10.1101/737528 — bioinformatics — Posted on 2019-08-20

1306 Gestural Communication of Wild Bonnet Macaques in the Bandipur National Park, Southern India

Gupta, S.; Sinha, A.

10.1101/739441 — animal behavior and cognition — Posted on 2019-08-20

1307 The state of discovery-driven neuroscience research and experimental organism usage in the United States

Farris, S. M.

10.1101/734798 — scientific communication and education — Posted on 2019-08-20

1308 Multi-State Design of Flexible Proteins Predicts Sequences Optimal for Conformational Change

Sauer, M. F.; Sevy, A. M.; Crowe, J. E.; Meiler, J.

10.1101/741454 — biophysics — Posted on 2019-08-20

1309 Humans can efficiently look for but not select multiple visual objects

Ort, E.; Fahrenfort, J. J.; ten Cate, T.; Eimer, M.; Olivers, C. N. L.

10.1101/653030 — neuroscience — Posted on 2019-08-20

1310 A dynamical model of the laminar BOLD response

Havlicek, M.; Uludag, K.

10.1101/609099 — neuroscience — Posted on 2019-08-20

1311 A Comprehensive Integrated Anatomical And Molecular Atlas Of Rodent Intrinsic Cardiac Nervous System

Achanta, S.; Gorky, J. M.; Leung, C.; Moss, A.; Robbins, S.; Eisenman, L.; Chen, J.; Tappan, S.; Heal, M.; Farahani, N.; Huffman, T.; Cheng, Z.; Vadigepalli, R.; Schwaber, J. S.

10.1101/661033 — neuroscience — Posted on 2019-08-20

1312 Region-specific magnetic fields structure sea turtle populations

Cameron, S. J. K.; Baltazar-Soares, M.; Eizaguirre, C.

10.1101/630152 — evolutionary biology — Posted on 2019-08-20

1313 DeepPoseKit: a software toolkit for fast and robust animal pose estimation using deep learning

Graving, J. M.; Chae, D.; Naik, H.; Li, L.; Koger, B.; Costelloe, B. R.; Couzin, I. D.

10.1101/620245 — animal behavior and cognition — Posted on 2019-08-20

1314 Frontal Cortex Differentiates Between Free and Imposed Target Selection in Multiple-TargetSearch

Ort, E.; Fahrenfort, J. J.; Reeder, R. R.; Pollmann, S.; Olivers, C. N. L.

10.1101/559500 — neuroscience — Posted on 2019-08-20

1315 Older adults sacrifice response speed to preserve multisensory integration performance

Jones, S. A.; Beierholm, U.; Meijer, D.; Noppeney, U.

10.1101/474882 — neuroscience — Posted on 2019-08-20

1316 Gametophytes and embryo ontogeny: understanding the reproductive calendar of Cypripedium japonicum Thunb. (Cypripedoideae, Orchidaceae)

Ghimire, B.; Son, S. W.; Kim, J. H.; Jeong, M. J.

10.1101/738799 — developmental biology — Posted on 2019-08-20

1317 Intracellular Galectin-9 controls dendritic cell function by maintaining plasma membrane rigidity

Querol Cano, L.; Tagit, O.; van Duffelen, A.; Dieltjes, S.; Buschow, S. I.; Niki, T.; Hirashima, M.; Joosten, B.; van den Dries, K.; Cambi, A.; Figdor, C. G.; van Spriel, A. B.

10.1101/739797 — cell biology — Posted on 2019-08-20

1318 A cold shock protein from a thermophile bacterium promotes the high-temperature growth of bacteria and fungi through binding to diverse RNA species

Zhou, Z.; Tang, H.; Wang, W.; Zhang, L.; Su, F.; Wu, Y.; Bai, L.; Li, S.; Sun, Y.; Tao, F.; Xu, P.

10.1101/739763 — microbiology — Posted on 2019-08-20

1319 Integrated single-cell transcriptomics and chromatin accessibility analysis reveals novel regulators of mammary epithelial cell identity

Pervolarakis, N.; Nguyen, Q.; Gutierrez, G.; Sun, P.; Jhutty, D.; Zheng, G. X.; Nemec, C. M.; Dai, X.; Watanabe, K.; Kessenbrock, K.

10.1101/740746 — cell biology — Posted on 2019-08-20

1320 Cell explosions: single cell death triggers an avoidance response in local populations of the ecologically prominent phytoplankton genus Micromonas

Henshaw, R. J.; Roberts, J.; Polin, M.

10.1101/740605 — biophysics — Posted on 2019-08-20

1321 ATP emerged to induce protein folding, inhibit aggregation and increase stability

Kang, J.; Lim, L.; Song, J.

10.1101/739581 — biochemistry — Posted on 2019-08-20

1322 Sandwich cortical lamination and single-cell analysis decodes the developing spatial processing system.

Liu, Y.; Bergmann, T.; Lee, J.; Pfisterer, U.; Handfield, L.-F.; Mori, Y.; Asenjo-Martinez, A.; Lisa-Vargas, I.; Seemann, S. E.; Hang Lee, J. T.; Patikis, N.; Peralvo Vidal, J. M.; Pihl, M.; Rahbek Kornum, B.; Dybdahl Thomsen, P.; Hyttel, P.; Witter, M. P.; Khodosevich, K.; Gorodkin, J.; Hemberg, M.; Pers, T.; Hall, V. J.

10.1101/738443 — developmental biology — Posted on 2019-08-20

1323 Cep97 Is Required For Centriole Structural Integrity And Cilia Formation In Drosophila

Dobbelaere, J.; Schmidt-Cernohorska, M.; Huranova, M.; Slade, D.; Dammermann, A.

10.1101/740217 — cell biology — Posted on 2019-08-20

1324 Deconstructing glucose-mediated catabolite repression of the lac operon of Escherichia coli: I. Inducer exclusion, by itself, cannot account for the repression.

Aggarwal, R. K.; Narang, A.

10.1101/739458 — systems biology — Posted on 2019-08-20

1325 Human colon-on-a-chip enables continuous in vitro analysis of colon mucus layer accumulation and physiology

Sontheimer-Phelps, A.; Chou, D. B.; Tovaglieri, A.; Ferrante, T. C.; Duckworth, T.; Fadel, C.; Frismantas, V.; Jalili Firoozinezhad, S.; Kasendra, M.; Stas, E.; Weaver, J. C.; Richmond, C. A.; Levy, O.; Prantil-Baun, R.; Breault, D. T.; Ingber, D. E.

10.1101/740423 — cell biology — Posted on 2019-08-20

1326 2.7 A cryo-EM structure of vitrified M. musculus H-chain apoferritin from 200 keV \"screening microscope\"

Hamdi, F.; Tueting, C.; Semchonok, D. A.; Kyrilis, F. L.; Meister, A.; Skalidis, I.; Schmidt, L.; Parthier, C.; Stubbs, M. T.; Kastritis, P. L.

10.1101/738724 — biophysics — Posted on 2019-08-20

1327 Extent of N-terminus exposure by altered long-range interactions of monomeric alpha-synuclein determines its aggregation propensity

Stephens, A. D.; Zacharopoulou, M.; Moons, R.; Fusco, G.; Seetaloo, N.; Chiki, A.; Hooper, P. J.; Mela, I.; Lashuel, H. A.; Philips, J. J.; De Simone, A.; Sobott, F. D.; Kaminski Schierle, G. S.

10.1101/740241 — biophysics — Posted on 2019-08-20

1328 Glycoproteomic measurement of site-specific polysialylation

Pelingon, R.; Pegg, C. L.; Zacchi, L. F.; Phung, T. K.; Howard, C. B.; Xu, P.; Hardy, M. P.; Owczarek, C. M.; Schulz, B. L.

10.1101/740928 — biochemistry — Posted on 2019-08-20

1329 Higher-order chromatin organization defines PR and PAX2 binding to regulate endometrial cancer cell gene expression

La Greca, A.; Bellora, N.; Le Dily, F.; Jara, R.; Quilez, J.; Merino, G.; Fresno, C.; Tarifa Rieschle, I.; Vallejo, G.; Vicent, G.; Fernandez, E.; Beato, M.; Saragüeta, P.

10.1101/739466 — genomics — Posted on 2019-08-20

1330 Invariant Genes in Human Genomes

Pathak, A. K.; Jainarayanan, A. K.; Brahmachari, S. K.

10.1101/739706 — genomics — Posted on 2019-08-20

1331 Biological machine learning combined with bacterial population genomics reveals common and rare allelic variants of genes to cause disease

Bandoy, D. D. R.; Weimer, B. C.

10.1101/739540 — genomics — Posted on 2019-08-20

1332 Single nucleus RNA sequencing maps acinar cell states in a human pancreas cell atlas

Tosti, L.; Hang, Y.; Trefzer, T.; Steiger, K.; Ten, F. W.; Lukassen, S.; Ballke, S.; Kuehl, A. A.; Spieckermann, S.; Bottino, R.; Weichert, W.; Kim, S. K.; Eils, R.; Conrad, C.

10.1101/733964 — genomics — Posted on 2019-08-20

1333 SyRI: finding genomic rearrangements and local sequence differences from whole-genome assemblies

Goel, M.; Sun, H.; Jiao, W.-B.; Schneeberger, K.

10.1101/546622 — bioinformatics — Posted on 2019-08-20

1334 Ctf4 organizes sister replisomes and Pol alpha into a replication factory

Yuan, Z.; Georgescu, R.; Almeida Santos, R. d. L.; Zhang, D.; Bai, L.; Yao, N. Y.; Zhao, G.; O'Donnell, M. E.; Li, H.

10.1101/735746 — biochemistry — Posted on 2019-08-20

1335 Task errors drive memories that improve sensorimotor adaptation.

Leow, L.-A.; Marinovic, W.; de Rugy, A.; Carroll, T. J.

10.1101/538348 — neuroscience — Posted on 2019-08-20

1336 DNA variants affecting the expression of numerous genes in trans have diverse mechanisms of action and evolutionary histories

Lutz, S.; Brion, C.; Kliebhan, M.; Albert, F. W.

10.1101/740076 — genetics — Posted on 2019-08-20

1337 Invariance in ecological pattern

Frank, S. A.; Bascompte, J.

10.1101/673590 — ecology — Posted on 2019-08-20

1338 The desmosomal cadherin Desmogon is necessary for the structural integrity of the Medaka notochord

Seleit, A.; Gross, K.; Wölk, M.; Autorino, C.; Centanin, L.; Onistschenko, J.

10.1101/620070 — developmental biology — Posted on 2019-08-20

1339 A Bayesian framework for the detection of diffusive heterogeneity

Cass, J.; Williams, C. D.; Theriot, J.

10.1101/740175 — biophysics — Posted on 2019-08-19

1340 LFMD: detecting low-frequency mutations in genome sequencing data without molecular tags

Ye, R.; Ruan, J.; Zhuang, X.; Qi, Y.; An, Y.; Xu, J.; Mak, T.; Liu, X.; Zhang, X.; Yang, H.; Xu, X.; Baum, L.; Nie, C.; Sham, P. C.

10.1101/617381 — bioinformatics — Posted on 2019-08-20

1341 Pragmatic selection of larval mosquito diets for insectary rearing of Anopheles gambiae and Aedes aegypti

Benedict, M. Q.; Hunt, C. M.; Vella, M. G.; Gonzalez, K. M.; Dotson, E. M.; Collins, C. M.

10.1101/740142 — physiology — Posted on 2019-08-19

1342 Acute characterization of tissue and functional deficits in a clinically translatable pig model of ischemic stroke

Kaiser, E. E.; Waters, E. S.; Fagan, M. M.; Scheulin, K. M.; Platt, S. R.; Jeon, J. H.; Fang, X.; Kinder, H. A.; Shin, S. K.; Duberstein, K. J.; Park, H. J.; West, F. D.

10.1101/740159 — neuroscience — Posted on 2019-08-19

1343 Unravelling the virome in birch: RNA-Seq reveals a complex of known and novel viruses

Rumbou, A.; Thierry, C.; Marais, A.; Svanella-Dumas, L.; Landgraf, M.; von Bargen, S.; Buettner, C.

10.1101/740092 — molecular biology — Posted on 2019-08-19

1344 Freshwater soundscapes: a cacophony of undescribed biological sounds now threatened by anthropogenic noise

Rountree, R. A.; Juanes, F.; Bolgan, M.

10.1101/740183 — ecology — Posted on 2019-08-19

1345 The role of ANGIOGENIN, or lack thereof, in the generation of stress-induced tRNA halves and of smaller tRNA fragments that enter Argonaute complexes

Su, Z.; Kuscu, C.; Malik, A.; Shibata, E.; Dutta, A.

10.1101/737114 — molecular biology — Posted on 2019-08-19

1346 Ovule development in Cycads: observation on anatomy and nucellus morphology in Zamia and Cycas

Zhang, X.

10.1101/735837 — evolutionary biology — Posted on 2019-08-19

1347 Mice Lacking FXR Are Susceptible to Liver Ischemia-Reperfusion Injury

Li, Y.; Xu, R.; Rao, P. K.; Gomes, C. K.; Moran, E. R.; Puchowicz, M.; Chang, E. B.; Yin, D. P.; Pierre, J. F.

10.1101/739839 — physiology — Posted on 2019-08-19

1348 Cannibalism as a feeding strategy for mantis shrimp Oratosquilla oratoria (De Haan, 1844) in the Tianjin coastal zone of Bohai Bay

Bo, Q.-K.; Lu, Y.-Z.; Mi, H.-J.; Yu, G. Y.; Gu, D.-X.; You, H.-Z.; Hao, S.

10.1101/740100 — molecular biology — Posted on 2019-08-19

1349 Proteomic profiling of Mycobacterium tuberculosis culture filtrate identifies novel O-glycosylated proteins

Tucci, P.; Portela, M.; Chetto, C. R.; Gonzalez-Sapienza, G.; Marin, M.

10.1101/740134 — microbiology — Posted on 2019-08-19

1350 Use of short-term high energy dietary for estimating transcriptional profiling of liver tissues in sheep

Yang, S.; Guo, Y.; He, C.; Liu, Y.; Zhang, Y.

10.1101/740118 — genetics — Posted on 2019-08-19

1351 DNA variants affecting the expression of numerous genes in trans have diverse mechanisms of action and evolutionary histories

Lutz, S.; Brion, C.; Kliebhan, M.; Albert, F. W.

10.1101/740076 — genetics — Posted on 2019-08-19

1352 Social network analysis and the implications for Pontocaspian biodiversity conservation in Romania and Ukraine: A comparative study

Gogaladze, A.; Raes, N.; Biesmeijer, K.; Ionescu, C.; Pavel, B.; Son, M. O.; Gozak, N.; Anistratenko, V.; Wesselingh, F. P.

10.1101/740084 — ecology — Posted on 2019-08-19

1353 Short-term effects of GPS collars on the activity, behavior, and adrenal response of scimitar-horned oryx (Oryx dammah)

Stabach, J. A.; Cunningham, S. A.; Connette, G.; Mota, J. L.; Reed, D.; Byron, M.; Songer, M.; Wacher, T.; Mertes, K.; Brown, J. L.; Comizzoli, P.; Newby, J.; Monfort, S.; Leimgruber, P.

10.1101/740191 — ecology — Posted on 2019-08-19

1354 Protocol development for discovery of angiogenesis inhibitors via automated methods using zebrafish

Mauro, A.; Ng, R.; Li, J. Y.; Guan, R.; Wang, Y.; Singh, K. K.; Wen, X.-Y.

10.1101/739854 — developmental biology — Posted on 2019-08-19

1355 Novel computational deep learning strategy for neuroprotection identification reveals unique set of nicotine analogs as potential therapeutic compounds against Parkinsons disease

Rojas-Rodriguez, F.; Morantes, C.; Pinzon, A. M.; Barreto, G. E.; Cabezas, R.; Marino, L.; Gonzalez, J.

10.1101/740050 — bioinformatics — Posted on 2019-08-19

1356 Assessment of a western blot signal for the Bcnt/Cfdp1, a tentative component of Srcap chromatin remodeling complex; trial to overcome off-target problems

Iwashita, S.; Suzuki, T.; Kiriyama, Y.; Dohmae, N.; Ohka, Y.; Song, S.-Y.; Nakashima, K.

10.1101/739862 — biochemistry — Posted on 2019-08-19

1357 Effects of breed, management and personality on cortisol reactivity in sport horses

Sauer, F. J.; Hermann, M.; Ramseyer, A.; Burger, D.; Riemer, S.; Gerber, V.

10.1101/739847 — animal behavior and cognition — Posted on 2019-08-19

1358 Successes of artemisinin elicitation in low-artemisinin producing Artemisia annua cell cultures constrained by repression of biosynthetic genes

Kam, M. Y. Y.; Yap, W.

10.1101/740167 — plant biology — Posted on 2019-08-19

1359 Redundancy and specificity of type VI secretion vgrG loci in antibacterial activity of Agrobacterium tumefaciens 1D1609 strain

Santos, M. N. M.; Cho, S.-T.; Wu, C.-F.; Chang, C.-J.; Kuo, C.-H.; Lai, E.-M.

10.1101/740209 — microbiology — Posted on 2019-08-19

1360 A neural network for information seeking

White, J. K.; Bromberg-Martin, E. S.; Heilbronner, S. R.; Zhang, K.; Pai, J.; Haber, S. N.; Monosov, I. E.

10.1101/720433 — neuroscience — Posted on 2019-08-19

1361 ADHD symptoms map onto noise-driven structure-function decoupling between hub and peripheral brain regions

Hearne, L.; Lin, H.-Y.; Sanz-Leon, P.; Tseng, W.-Y. I.; Gau, S. S.-F.; Roberts, J.; Cocchi, L.

10.1101/606228 — neuroscience — Posted on 2019-08-19

1362 Mfn2 requires Hinge 1 integrity for efficient nucleotide-dependent assembly and membrane fusion

Samanas, N. B.; Engelhart, E. A.; Hoppins, S.

10.1101/651877 — cell biology — Posted on 2019-08-19

1363 Dynamin-2 controls phagophore maturation

Martorell Riera, A.; Iriondo Martinez, C.; Itskanov, S.; Steffen, J.; Roach, B.; Koehler, C. M.; Van der Bliek, A. M.

10.1101/241901 — cell biology — Posted on 2019-08-19

1364 A Generalized Similarity Metric for Peptide Binding Affinity Prediction

Rodriguez, J. L.; Rath, S. S.; Francis-Landau, J. S.; Demirci, Y.; Ustundag, B. B.; Sarikaya, M.

10.1101/654913 — bioinformatics — Posted on 2019-08-19

1365 A major locus controls a biologically active pheromone component in Heliconius melpomene

Byers, K. J. R. P.; Darragh, K.; Musgrove, J.; Abondano Almeida, D.; Fernanda Garza, S.; Warren, I. A.; Rastas, P.; Kucka, M.; Chan, Y. F.; Merrill, R. M.; Schulz, S.; McMillan, W. O.; Jiggins, C. D.

10.1101/739037 — evolutionary biology — Posted on 2019-08-19

1366 Rapid neural representations of personally relevant faces

Bayer, M.; Berhe, O.; Dziobek, I.; Johnstone, T.

10.1101/585133 — neuroscience — Posted on 2019-08-19

1367 Broadband slow-wave modulation in posterior and anterior cortex tracks distinct states of propofol-induced unconsciousness

Stephen, E. P.; Hotan, G. C.; Pierce, E. T.; Harrell, P. G.; Walsh, J. L.; Brown, E. N.; Purdon, P. P.

10.1101/712604 — neuroscience — Posted on 2019-08-19

1368 Low-dose Perampanel rescues cortical gamma dysregulation associated with parvalbumin interneuron GluA2 upregulation in epileptic Syngap1+/- mice

Sullivan, B. J.; Ammanuel, S.; Kipnis, P. A.; Araki, Y.; Huganir, R. L.; Kadam, S. D.

10.1101/718965 — neuroscience — Posted on 2019-08-19

1369 Presynaptic mitochondria volume and abundance increase during development of a high-fidelity synapse

Thomas, C. I.; Keine, C.; Okayama, S.; Satterfield, R.; Musgrove, M.; Guerrero-Given, D.; Kamasawa, N.; Young, S. M.

10.1101/689653 — neuroscience — Posted on 2019-08-19

1370 The large GTPase, mGBP-2, regulates Rho family GTPases to inhibit migration and invadosome formation in Triple-Negative Breast Cancer cells.

Nyabuto, G. O.; Wilson, J. P.; Heilman, S. A.; Kalb, R. C.; Abnave, A. V.; Vestal, D. J.

10.1101/679514 — cancer biology — Posted on 2019-08-19

1371 Somatic aging pathways regulate reproductive plasticity in Caenorhabditis elegans

Ow, M. C.; Nichitean, A. M.; Hall, S. E.

10.1101/673764 — genetics — Posted on 2019-08-19

1372 JARA: 'Just Another Red-List Assessment'

Winker, H.; Sherley, R.

10.1101/672899 — ecology — Posted on 2019-08-19

1373 Molecular Dynamics Analysis of Mg2+-dependent Cleavage of a Pistol Ribozyme Reveals a Fail-safe Secondary Ion for Catalysis

Joseph, N. N.; Roy, R. N.; Steitz, T. A.

10.1101/596270 — biophysics — Posted on 2019-08-19

1374 A consensus set of genetic vulnerabilities to ATR inhibition

Hustedt, N.; Alvarez-Quilon, A.; McEwan, A.; Yuan, J. Y.; Cho, T.; Koob, L.; Hart, T.; Durocher, D.

10.1101/574533 — molecular biology — Posted on 2019-08-19

1375 Sublethal antibiotics collapse gut bacterial populations by enhancing aggregation and expulsion

Schlomann, B. H.; Wiles, T. J.; Wall, E. S.; Guillemin, K.; Parthasarathy, R.

10.1101/565556 — microbiology — Posted on 2019-08-19

1376 Spectral tuning of adaptation supports coding of sensory context in auditory cortex

Lopez Espejo, M.; Schwartz, Z. P.; David, S. V.

10.1101/534537 — neuroscience — Posted on 2019-08-19

1377 Reduced function of the RNA export factor, Nxt1, in Drosophila causes muscle degeneration and lowers expression of genes with long introns and circular RNA

van der Graaf, K.; Jindrich, K.; Mitchell, R.; White-Cooper, H.

10.1101/543942 — genetics — Posted on 2019-08-19

1378 A network-based integrated framework for predicting virus-host interactions

Wang, W.; Ren, J.; Tang, K.; Dart, E.; Fuhrman, J. A.; Braun, J.; Sun, F.; Ahlgren, N. A.

10.1101/505768 — bioinformatics — Posted on 2019-08-19

1379 Structural basis for Rab8a GTPase recruitment of RILPL2 via LRRK2 phosphorylation of switch 2

Khan, A. R.; Alessi, D. R.; Waschbusch, D.; Purlyte, E.; Pal, P.; McGrath, E.

10.1101/739813 — biochemistry — Posted on 2019-08-19

1380 Structure of S. pombe telomerase protein Pof8 C-terminal domain is an xRRM conserved among LARP7 proteins

Basu, R.; Eichhorn, C. D.; Cheng, R.; Feigon, J.

10.1101/739532 — biophysics — Posted on 2019-08-19

1381 Detecting differential alternative splicing events in scRNA-seq with or without UMIs

Hu, Y.; Wang, K.; Li, M.

10.1101/738997 — bioinformatics — Posted on 2019-08-19

1382 Cortical Overgrowth in a Preclinical Forebrain Organoid Model of CNTNAP2-Associated Autism Spectrum Disorder

de Jong, J. O.; Llapashtica, C.; Strauss, K.; Provenzano, F.; Sun, Y.; Cortese, G. P.; Brigatti, K. W.; Corneo, B.; Migliori, B.; Kushner, S. A.; Kellendonk, C.; Javitch, J. A.; Xu, B.; Markx, S.

10.1101/739391 — neuroscience — Posted on 2019-08-19

1383 PASER for automated analysis of neural signals recorded in pulsating magnetic fields

Brouns, T.; Celikel, T.

10.1101/739409 — neuroscience — Posted on 2019-08-19

1384 The etiological classification of the epilepsies: A brain network underpinning?

Slinger, G.; Otte, W. M.; Noorlag, L.; Jansen, F. E.; Braun, K. P. J.; van Diessen, E.

10.1101/739052 — neuroscience — Posted on 2019-08-19

1385 Theta Phase-Dependent Modulation of Perception by Concurrent tACS and Periodic Visual Stimulation

Somer, E.; Allen, J. A.; Brooks, J. L.; Buttrill, V.; Javadi, A.-H.

10.1101/738906 — neuroscience — Posted on 2019-08-19

1386 Association of extent of cannabis use and psychotic like intoxication experiences in a multi-national sample of First Episode Psychosis patients and controls

Sami, M.; Quattrone, D.; Ferraro, L.; Tripoli, G.; La Cascia, E.; Gayer-Anderson, C.; Selton, J.-P.; Arango, C.; Barnardo, M.; Tarricone, I.; Tortelli, A.; Gatto, G.; del Peschio, S.; Marta Del-Ben, C.; Rutten, B.; Jones, P.; van Os, J.; de Haan, L.; Morgan, C.; Lewis, C.; Bhattacharyya, S.; Freeman, T.; Lynskey, M.; Murray, R.; Di Forti, M.

10.1101/739425 — neuroscience — Posted on 2019-08-19

1387 Regularized-Ncut: Robust and homogeneous functional parcellation of neonate and adult brain networks

Peng, Q.; Ouyang, M.; Wang, J.; Yu, Q.; Zhao, C.; Slinger, M.; Li, H.; Fan, Y.; Hong, B.; Huang, H.

10.1101/737627 — neuroscience — Posted on 2019-08-19

1388 How does habitat choice affect evolutionary rescue in subdivided populations?

Czuppon, P.; Blanquart, F.; Uecker, H.; Debarre, F.

10.1101/738898 — evolutionary biology — Posted on 2019-08-19

1389 Spherical deconvolution with tissue-specific response functions and multi-shell diffusion MRI to estimate multiple fiber orientation distributions (mFODs)

De Luca, A.; Guo, F.; Froeling, M.; Leemans, A.

10.1101/739136 — bioinformatics — Posted on 2019-08-19

1390 Lossless and Contamination-Free Digital PCR

Liao, P.; Jiang, M.; Chen, Z.; Zhang, F.; Sun, Y.; Nie, J.; Du, M.; Wang, J.; Fei, P.; Huang, Y.

10.1101/739243 — bioengineering — Posted on 2019-08-19

1391 Antibody binding epitope Mapping (AbMap) of hundred antibodies in a single run

Qi, H.; Ma, M.-l.; Hu, C.-s.; Xu, Z.-w.; Wu, F.-l.; Wang, N.; Lai, D.-y.; Li, Y.; Guo, S.-j.; Zhao, X.; Li, H.; Tao, S.-c.

10.1101/739342 — immunology — Posted on 2019-08-19

1392 Two real use cases of FAIR maturity indicators in the life sciences

Bonaretti, S.; Willighagen, E.

10.1101/739334 — bioinformatics — Posted on 2019-08-19

1393 High School Science Fair: Positive And Negative Outcomes

Grinnell, F.; Dalley, S.; Reisch, J.

10.1101/737270 — scientific communication and education — Posted on 2019-08-19

1394 History biases reveal novel dissociations between perceptual and metacognitive decision-making

Benwell, C. S. Y.; Beyer, R.; Wallington, F.; Ince, R. A. A.

10.1101/737999 — neuroscience — Posted on 2019-08-19

1395 Automatic Spatial Estimation of White Matter Hyperintensities Evolution in Brain MRI using Disease Evolution Predictor Deep Neural Networks

Rachmadi, M. F.; Valdes Hernandez, M. d. C.; Makin, S.; Wardlaw, J. M.; Komura, T.

10.1101/738641 — neuroscience — Posted on 2019-08-19

1396 Opponent neurochemical and functional processing in NREM and REM sleep in visual learning

Tamaki, M.; Wang, Z.; Barnes-Diana, T.; Berard, A. V.; Walsh, E.; Watanabe, T.; Sasaki, Y.

10.1101/738666 — neuroscience — Posted on 2019-08-19

1397 A major locus controls a biologically active pheromone component in Heliconius melpomene

Byers, K. J. R. P.; Darragh, K.; Musgrove, J.; Abondano Almeida, D.; Fernanda Garza, S.; Warren, I. A.; Rastas, P.; Kucka, M.; Chan, Y. F.; Merrill, R. M.; Schulz, S.; McMillan, W. O.; Jiggins, C. D.

10.1101/739037 — evolutionary biology — Posted on 2019-08-19

1398 Aging induces aberrant state transition kinetics in murine muscle stem cells

Kimmel, J. C.; Hwang, A. B.; Marshall, W. F.; Brack, A. S.

10.1101/739185 — developmental biology — Posted on 2019-08-19

1399 A probabilistic framework for cellular lineage reconstruction using single-cell 5-hydroxymethylcytosine sequencing

Wangsanuwat, C.; Aldeguer, J. F.; Rivron, N. C.; Dey, S. S.

10.1101/739300 — systems biology — Posted on 2019-08-19

1400 A SAC phosphoinositide phosphatase controls rice development via hydrolyzing phosphatidylinositol 4-phosphate and phosphatidylinositol 4,5-bisphosphate

Guo, T.; Lin, H.-X.; Chen, K.; Dong, N.-Q.; Huang, S.; Ye, W.-W.; Shan, J.-X.; Chen, H.-C.; Lu, Z.-Q.; Diao, M.

10.1101/740001 — plant biology — Posted on 2019-08-19

1401 Integrated Multi-omic Framework of the Plant Response to Jasmonic Acid

Zander, M.; Lewsey, M. G.; Clarke, N. M.; Yin, L.; Bartlett, A.; Saldierna Guzman, J. P.; Hann, E.; Langford, A.; Jow, B.; Wise, A.; Nery, J. R.; Chen, H.; Bar-Joseph, Z.; Walley, J.; Solano, R.; Ecker, J. R.

10.1101/736363 — plant biology — Posted on 2019-08-19

1402 Developing a rapid and highly efficient cowpea regeneration and transformation system using embryonic axis explants

Che, P.; Chang, S.; Simon, M. K.; Zhang, Z.; Shaharyar, A.; Ourada, J.; O'Neill, D.; Torres-Mendoza, M.; Guo, Y.; Marasigan, K. M.; Vielle-Calzada, J.-P.; Ozias-Akins, P.; Albertsen, M. C.; Jones, T. J.

10.1101/738971 — plant biology — Posted on 2019-08-19

1403 Paternal aging affects the developmental patterns of ultrasonic vocalization induced by maternal separation in neonatal mice individually

Mai, L.; Kimura, R.; Inada, H.; Kanno, K.; Matsuda, T.; Tachibana, R. O.; Yoshizaki, K.; Komaki, F.; Osumi, N.

10.1101/738781 — neuroscience — Posted on 2019-08-19

1404 Interplay between metrical and semantic processing in French: an N400 study.

te Rietmolen, N.; El Yagoubi, R.; Astesano, C.

10.1101/738930 — neuroscience — Posted on 2019-08-19

1405 Reward does not facilitate visual perceptual learning until sleep occurs

Tamaki, M.; Berard, A. V.; Barnes-Diana, T.; Siegel, J.; Watanabe, T.; Sasaki, Y.

10.1101/738765 — neuroscience — Posted on 2019-08-19

1406 Modulation of human intracranial theta oscillations during freely moving spatial navigation and memory

M. Aghajan, Z.; Villaroman, D.; Hiller, S.; Wishard, T. J.; Topalovic, U.; Christov-Moore, L.; Shaterian, N.; Hasulak, N. R.; Knowlton, B.; Eliashiv, D.; Rao, V.; Fried, I.; Suthana, N.

10.1101/738807 — neuroscience — Posted on 2019-08-19

1407 Fork Pausing Complex Engages Topoisomerases at the Replisome

Shyian, M.; Albert, B.; Zupan, A. M.; Ivanitsa, V.; Charbonnet, G.; Dilg, D.; Shore, D.

10.1101/738328 — molecular biology — Posted on 2019-08-19

1408 A case of mistaken identity: structurally similar ligand inhibits Thymidylate Kinase causing reversible filamentation of E. coli

Bhattacharyya, S.; Bershtein, S.; ADKAR, B. V.; Woodard, J.; Shakhnovich, E.

10.1101/738823 — microbiology — Posted on 2019-08-19

1409 Streaming of repeated noise in primary and secondary fields of auditory cortex

Saderi, D.; Buran, B. N.; David, S. V.

10.1101/738583 — neuroscience — Posted on 2019-08-19

1410 Shuttling of Dorsal by Cactus: mechanism and implications

Schloop, A. E.; Carrell-Noel, S.; Reeves, G. T.

10.1101/739284 — developmental biology — Posted on 2019-08-19

1411 dsRNA-Seq: Identification of viral infection by purifying and sequencing dsRNA

Decker, C. J.; Steiner, H. R.; Hoon-Hanks, L. L.; Morrison, J. H.; Haist, K. C.; Stabell, A. C.; Poeschla, E. M.; Morrison, T. E.; Stenglein, M. D.; Sawyer, S. L.; Parker, R.

10.1101/738377 — molecular biology — Posted on 2019-08-19

1412 Inhibition of ErbB kinase signalling promotes resolution of neutrophilic inflammation

Prince, L.; Renshaw, S.; Rahman, A.; Henry, K. M.; Herman, K.; Thompson, A. A. R.; Isles, H.; Tulotta, C.; Sammut, D.; Rougeot, J.; Khoshaein, N.; Reese, A.; Higgins, K.; Tabor, C.; Sabroe, I.; Zuercher, W. J.; Savage, C.; Meijer, A.; Whyte, M.; Dockrell, D.

10.1101/738682 — immunology — Posted on 2019-08-19

1413 Saving large fish through harvest slots outperforms the classical minimum-length limit when the aim is to achieve multiple harvest and catch-related fisheries objectives

Ahrens, R.; Allen, M. S.; Walters, C.; Arlinghaus, R.

10.1101/738708 — ecology — Posted on 2019-08-19

1414 The absence of SOX2 in the anterior foregut alters the esophagus into trachea and bronchi in both epithelial and mesenchymal components

Teramoto, M.; Sugawara, R.; MInegishi, K.; Uchikawa, M.; Takemoto, T.; Kuroiwa, A.; Ishii, Y.; Kondoh, H.

10.1101/739714 — developmental biology — Posted on 2019-08-19

1415 Identification and mapping of central pair proteins by proteomic analysis

Dai, D.; Ichikawa, M.; Peri, K.; Rebinsky, R.; Bui, K. H.

10.1101/739383 — biophysics — Posted on 2019-08-19

1416 A comprehensive annotation and differential expression analysis of short and long non-coding RNAs in 16 bat genomes

Mostajo Berrospi, N.; Lataretu, M.; Krautwurst, S.; Mock, F.; Desiro, D.; Lamkiewicz, K.; Collatz, M.; Schoen, A.; Weber, F.; Marz, M.; Hölzer, M.

10.1101/738526 — bioinformatics — Posted on 2019-08-19

1417 Supporting evidence for DNA shearing as a mechanism for origin unwinding in eukaryotes

Langston, L. D.; Georgescu, R.; O'Donnell, M. E.

10.1101/739557 — biochemistry — Posted on 2019-08-19

1418 A solution to the learning dilemma for recurrent networks of spiking neurons

Bellec, G.; Scherr, F.; Subramoney, A.; Hajek, E.; Salaj, D.; Legenstein, R.; Maass, W.

10.1101/738385 — neuroscience — Posted on 2019-08-19

1419 Perceiving structure in unstructured stimuli: Implicitly acquired prior knowledge impacts the processing of unpredictable transitional probabilities

Kobor, A.; Horvath, K.; Kardos, Z.; Nemeth, D.; Janacsek, K.

10.1101/738419 — neuroscience — Posted on 2019-08-19

1420 Tonic GABAA conductance favors temporal over rate coding in the rat hippocampus

Dembitskaya, Y.; Wu, Y.-W.; Semyanov, A.

10.1101/738369 — neuroscience — Posted on 2019-08-19

1421 Modeling individual disability evolution in multiple sclerosis patients based on longitudinal multimodal imaging and clinical data

Tozlu, C.; Sappey-Marinier, D.; Kocevar, G.; Cotton, F.; Vukusic, S.; Durand-Dubief, F.; Maucort-Boulch, D.

10.1101/733295 — neuroscience — Posted on 2019-08-19

1422 mTORC1 signaling is not essential for the maintenance of muscle mass and function in adult sedentary mice

Ham, A. S.; Chojnowska, K.; Tintignac, L. A.; Lin, S.; Schmidt, A.; Ham, D. J.; Sinnreich, M.; Ruegg, M. A.

10.1101/738294 — molecular biology — Posted on 2019-08-19

1423 An alternative AUG codon that produces an N-terminally extended form of the influenza A virus NP is a virulence factor for a swine-derived virus.

Wise, H. M.; Gaunt, E.; Ping, J.; Holzer, B.; Jasim, S.; Lycett, S. J.; Murphy, L.; Livesey, A.; Brown, R.; Smith, N.; Morgan, S.; Clark, B.; Kudryavtseva, K.; Beard, P. M.; Nguyen-Van-Tam, J.; Salguero, F. J.; Tchilian, E.; Dutia, B. M.; Brown, E. G.; Digard, P.

10.1101/738427 — microbiology — Posted on 2019-08-19

1424 Single Cell Transcriptional Signatures of the Human Placenta in Term and Preterm Parturition

Pique-Regi, R.; Romero, R.; Tarca, A. L.; Sendler, E. D.; Xu, Y.; Garcia-Flores, V.; Leng, Y.; Luca, F.; Hassan, S. S.; Gomez-Lopez, N.

10.1101/738658 — genomics — Posted on 2019-08-19

1425 Evolution and plasticity of the transcriptome under temperature fluctuations in the fungal plant pathogen Zymoseptoria tritici

Jallet, A. J.; Le Rouzic, A. J.; Genissel, A.

10.1101/725010 — evolutionary biology — Posted on 2019-08-19

1426 Robustness of the Dorsal morphogen gradient with respect to morphogen dosage

Al Asafen, H. Y.; Bandodkar, P. U.; Carrell-Noel, S.; Reeves, G. T.

10.1101/739292 — developmental biology — Posted on 2019-08-19

1427 A Custom Microcontrolled and Wireless-Operated Chamber for Auditory Fear Conditioning

Junior, P. A. A.; Mourao, F. A. G.; Amancio, M. C. L.; Pinto, H. P.; Carvalho, V. R.; Guarnieri, L. d. O.; Magalhaes, H. A.; Moraes, M. F. D.

10.1101/738336 — bioengineering — Posted on 2019-08-19

1428 Flexible regions in the molecular architecture of Human fibrin clots structurally resolved by XL-MS and integrative structural modeling

Klykov, O.; Zwaan, C. v. d.; Heck, A. J. R.; Meijer, A. B.; Scheltema, R. A.

10.1101/739318 — biochemistry — Posted on 2019-08-19

1429 Conjugation-dependent \"gene drives\" harness indigenous bacteria for bioremediation

French, K. E.; Zhou, Z.; Terry, N.

10.1101/735886 — synthetic biology — Posted on 2019-08-19

1430 Prevalence estimate of blood doping in elite track and field at the introduction of the Athlete Biological Passport

Faiss, R.; Saugy, J.; Zollinger, A.; Robinson, N.; Schuetz, F.; Saugy, M.; Garnier, P.-Y.

10.1101/736801 — physiology — Posted on 2019-08-19

1431 Multivoxel patterns for perceptual confidence are associated with false color detection

Knotts, J.; Cortese, A.; Taschereau-Dumouchel, V.; Kawato, M.; Lau, H.

10.1101/735084 — neuroscience — Posted on 2019-08-19

1432 De novo whole-genome assembly in interspecific hybrid table grape, ‘Shine Muscat’

Shirasawa, K.; Azuma, A.; Taniguchi, F.; Yamamoto, T.; Sato, A.; Hirakawa, H.; Isobe, S.

10.1101/730762 — genomics — Posted on 2019-08-19

1433 CRISPR/Cas9 interrogation of the mouse Pcdhg gene cluster reveals a crucial isoform-specific role for Pcdhgc4

Garrett, A. M.; Bosch, P. J.; Steffen, D. M.; Fuller, L. C.; Marcucci, C. G.; Koch, A. A.; Bais, P.; Weiner, J. A.; Burgess, R. W.

10.1101/739508 — developmental biology — Posted on 2019-08-19

1434 Reduced firing rates of pyramidal cells in frontal cortex of APP/PS1 can be restored by acute treatment with levetiracetam

Klee, J. L.; Kiliaan, A. J.; Lipponen, A.; Battaglia, F. P.

10.1101/739912 — neuroscience — Posted on 2019-08-19

1435 A novel role for SHARPIN in Amyloid-beta- mediated macrophage function in Alzheimers disease

Krishnan, D.; Gopala, S.; Menon, R. N.; PS, M.

10.1101/732164 — molecular biology — Posted on 2019-08-19

1436 AANAT1 functions in astrocytes to regulate sleep homeostasis.

Davla, S.; Artiushin, G.; Chitsaz, D.; Li, S. S. Y.; Sehgal, A.; van Meyel, D.

10.1101/736223 — neuroscience — Posted on 2019-08-19

1437 A Single-Cell Transcriptome Atlas for Zebrafish Development

Farnsworth, D. R.; Saunders, L. M.; Miller, A. C.

10.1101/738344 — developmental biology — Posted on 2019-08-19

1438 Unit quaternion description of spatial rotation in 3D electron cryo-microscopy

Hu, M.; Zhang, Q.; Yang, J.; Li, X.

10.1101/733881 — biophysics — Posted on 2019-08-19

1439 Active behaviour during early development shapes glucocorticoid reactivity

Castillo-Ramirez, L. A.; Ryu, S.; De Marco, R. J.

10.1101/582163 — physiology — Posted on 2019-08-19

1440 WiPP: Workflow for improved Peak Picking for Gas Chromatography-Mass Spectrometry (GC-MS) data

Borgsmüller, N.; Gloaguen, Y.; Opialla, T.; Blanc, E.; Sicard, E.; Royer, A.-L.; Le Bizec, B.; Durand, S.; Migne, C.; Petera, M.; Pujos-Guillot, E.; Giacomoni, F.; Guitton, Y.; Beule, D.; Kirwan, J.

10.1101/713925 — bioinformatics — Posted on 2019-08-19

1441 DeepPoseKit: a software toolkit for fast and robust animal pose estimation using deep learning

Graving, J. M.; Chae, D.; Naik, H.; Li, L.; Koger, B.; Costelloe, B. R.; Couzin, I. D.

10.1101/620245 — animal behavior and cognition — Posted on 2019-08-19

1442 Leptin resistance establishment in the ovary of diet-induced obese mice and its relationship with cumulus cells transcriptome

Wolodko, K.; Walewska, E.; Castillo-Fernandez, J.; Kelsey, G. D.; Galvao, A.

10.1101/729657 — physiology — Posted on 2019-08-19

1443 Shifting from fear to safety through deconditioning-update: a novel approach to attenuate fear memories

Popik, B.; Amorim, F. E.; Amaral, O. B.; de Oliveira Alvares, L.

10.1101/605196 — neuroscience — Posted on 2019-08-19

1444 Prestimulus Activity in the Cingulo-Opercular Network Predicts Memory for Naturalistic Episodic Experience

Cohen, N.; Ben-Yakov, A.; Weber, J.; Edelson, M.; Paz, R.; Dudai, Y.

10.1101/176057 — neuroscience — Posted on 2019-08-19

1445 Whole genome duplication potentiates inter-specific hybridisation and niche shifts in Australian burrowing frogs Neobatrachus

Novikova, P. Y.; Brennan, I. G.; Booker, W.; Mahony, M.; Doughty, P.; Lemmon, A. R.; Lemmon, E. M.; Yant, L.; Van de Peer, Y.; Keogh, J. S.; Donnellan, S. C.

10.1101/593699 — evolutionary biology — Posted on 2019-08-19

1446 Drivers of diversity in individual life courses: Sensitivity of the population entropy of a Markov chain

Steiner, U. K.; Tuljapurkar, S.

10.1101/188276 — evolutionary biology — Posted on 2019-08-19

1447 Relocating agriculture could drastically reduce humanity’s ecological footprint

Beyer, R. M.; Manica, A.; Rademacher, T. T.

10.1101/488841 — ecology — Posted on 2019-08-19

1448 Abundance compensates kinetics: Similar effect of dopamine signals on D1 and D2 receptor populations

Hunger, L.; Kumar, A.; Schmidt, R.

10.1101/444984 — neuroscience — Posted on 2019-08-19

1449 Detecting selection from linked sites using an F-model

Galimberti, M.; Leuenberger, C.; Wolf, B.; Szilagyi, S. M.; Foll, M.; Wegmann, D.

10.1101/737916 — genomics — Posted on 2019-08-19

1450 Male meiotic spindle features that efficiently segregate paired and lagging chromosomes

Fabig, G.; Kiewisz, R.; Lindow, N.; Powers, J. A.; Cota, V.; Mateo, L. J.; Brugues, J.; Prohaska, S.; Chu, D. S.; Müller-Reichert, T.

10.1101/737494 — cell biology — Posted on 2019-08-19

1451 Syndecan-4 is required for VE-Cadherin trafficking during pathological angiogenesis

De Rossi, G.; Vähätupa, M.; Cristante, E.; Liyanage, S.; May, U.; Pellinen, L.; Aittomäki, S.; Martinez Cordova, Z.; Pesu, M.; Uusitalo-Järvinen, H.; Bainbridge, J.; Järvinen, T.; Whiteford, J.

10.1101/736553 — cell biology — Posted on 2019-08-19

1452 Growing old too early, automated assessment of skeletal muscle single fiber biomechanics in ageing R349P desmin knock-in mice using the MyoRobot technology

Meyer, C.; Haug, M.; Reischl, B.; Prölss, G.; Pöschel, T.; Rupitsch, S.; Clemen, C. S.; Schröder, R.; Friedrich, O.

10.1101/737973 — physiology — Posted on 2019-08-19

1453 Marked Neurospora crassa strains for competition experiments and Bayesian methods for fitness estimates

Kronholm, I.; Ormsby, T.; McNaught, K. J.; Selker, E. U.; Ketola, T.

10.1101/736645 — genetics — Posted on 2019-08-19

1454 Smad4 signaling establishes the somatosensory map of basal vomeronasal sensory neurons

Naik, A. S.; Lin, J. M.; Taroc, E. Z. M.; Katreddi, R. R.; Frias, J. A.; Sammons, M.; Forni, P. E.

10.1101/738393 — developmental biology — Posted on 2019-08-19

1455 Carbonic anhydrase VII regulates dendritic spine morphology and density via actin filament bundling

Bertling, E.; Blaesse, P.; Seja, P.; Kremneva, E.; Gateva, G.; Virtanen, M. A.; Summanen, M.; Spoljaric, I.; Blaesse, M.; Paavilainen, V.; Vutskits, L.; Kaila, K.; Hotulainen, P.; Ruusuvuori, E.

10.1101/736868 — cell biology — Posted on 2019-08-19

1456 p62-DNA-encoding plasmid reverts tumor grade, changes tumor stroma, and enhances anticancer immunity

Venanzi, F. M.; Gabai, V.; Mariotti, F.; Magi, G. E.; Vullo, C.; Kolesnikov, S. I.; Shneider, A.

10.1101/736686 — cancer biology — Posted on 2019-08-19

1457 Protein-protein docking using learned three-dimensional representations

Derevyanko, G.; Lamoureux, G.

10.1101/738690 — bioinformatics — Posted on 2019-08-19

1458 SVFX: a machine-learning framework to quantify the pathogenicity of structural variants

kumar, s.; Harmanci, A.; Vytheeswaran, J.; Gerstein, M.

10.1101/739474 — bioinformatics — Posted on 2019-08-19

1459 Self-reported sleep relates to hippocampal atrophy across the adult lifespan - results from the Lifebrain consortium

Fjell, A. M.; Sorensen, O.; Amlien, I. K.; Bartres-Faz, D.; Bros, D. M.; Demuth, I.; Drevon, C. A.; Duzel, S.; Ebmeier, K.; Idland, A.-V.; Kietzmann, T. C.; Kievit, R. A.; Kuhn, S. A.; Lindenberger, U.; Mowinckel, A.; Nyberg, L.; Price, D.; Sexton, C.; Sole-Padulles, C.; Pudas, S.; Sederevicius, D.; Suri, S.; Wagner, G.; Watne, L. O.; Westerhausen, R.; Zsoldos, E.; Walhovd, K. B.

10.1101/737858 — neuroscience — Posted on 2019-08-19

1460 Glycopeptide variable window SWATH for improved Data Independent Acquisition glycoproteomics

Zhou, C.; Schulz, B. L.

10.1101/739615 — biochemistry — Posted on 2019-08-19

1461 A Recurrent Neural Network Model for Flexible and Adaptive Decision Making based on Sequence Learning

Zhang, Z.; Cheng, H.; Yang, T.

10.1101/555862 — neuroscience — Posted on 2019-08-19

1462 Modelling asymmetric count ratios in CRISPR screens to decrease experiment size and improve phenotype detection

Imkeller, K.; Ambrosi, G.; Boutros, M.; Huber, W.

10.1101/699348 — bioinformatics — Posted on 2019-08-18

1463 The potentials and pitfalls of a human cervical organoid model including Langerhans cells

Jackson, R.; Lukacs, J. D.; Zehbe, I.

10.1101/733501 — cell biology — Posted on 2019-08-18

1464 Short-term supplementation of celecoxib shifted butyrate production and ameliorated inflammation on a simulated model of the gut microbial ecosystem

Hernandez-Sanabria, E.; Heiremans, E.; Calatayud, M.; Props, R.; Leclercq, L.; Snoeys, J.; Van de Wiele, T.

10.1101/679050 — microbiology — Posted on 2019-08-18

1465 A doublecortin-domain protein of Toxoplasma and its orthologues bind to and modify the structure and organization of tubulin polymers

Leung, J. M.; Nagayasu, E.; Hwang, Y.-C.; Liu, J.; Pierce, P.; Phan, I. Q.; Stacy, R.; Murray, J. M.; Hu, K.

10.1101/623140 — cell biology — Posted on 2019-08-18

1466 An In-Silico Investigation of Menthol Metabolism

Limpanuparb, T.; Lorpaiboon, W.; Chinsukserm, K.

10.1101/618975 — biochemistry — Posted on 2019-08-18

1467 Raising animals without antibiotics: producer and veterinarian experiences and opinions

Singer, R. S.; Porter, L. J.; Thomson, D. U.; Gage, M.; Beaudoin, A.; Wishnie, J. K.

10.1101/600965 — epidemiology — Posted on 2019-08-18

1468 Tunable self-cleaving ribozymes for modulating gene expression in eukaryotic systems

Jacobsen, T.; Yi, G.; Al Asafen, H. Y.; Jermusyk, A. A.; Beisel, C. L.; Reeves, G. T.

10.1101/739326 — bioengineering — Posted on 2019-08-18

1469 deSAMBA: fast and accurate classification of metagenomics long reads with sparse approximate matches

Li, G.; Liu, B.; Wang, Y.

10.1101/736777 — bioinformatics — Posted on 2019-08-18

1470 Genetic analysis of seed and pod traits in a set of Recombinant Inbred Lines (RILs) in peanut (Arachis hypogaea L.)

Chavarro, C.; Chu, Y.; Holbrook, C. C.; Isleib, T.; Bertioli, D.; Hovav, R.; Butts, C.; Marshall, L.; Sorensen, R.; Jackson, S. A.; Ozias-Akins, P.

10.1101/738914 — plant biology — Posted on 2019-08-18

1471 Evaluation of 20 enset (Ensete ventricosum) landraces for response to Xanthomonas vasicola pv. musacearum infection

Muzemil, S.; Chala, A.; Tesfaye, B.; Studholme, D. J.; Grant, M.; Yemataw, Z.; Olango, T. M.

10.1101/736793 — plant biology — Posted on 2019-08-18

1472 Models of heterogeneous dopamine signaling in an insect learning and memory center

Jiang, L.; Litwin-Kumar, A.

10.1101/737064 — neuroscience — Posted on 2019-08-18

1473 Exploring the microbial diversity in oil-contaminated mangrove sediments using 16S rRNA metagenomics

Ghanbari, M.; Jami, M.; Shahriari Moghadam, M.; Domig, K. J.

10.1101/735290 — microbiology — Posted on 2019-08-18

1474 Characterization of the gut microbiota in the Anjak (Schizocypris altidorsalis), a native fish species of Iran

Ghanbari, M.; Jami, M.; Shahraki, H.; Domig, K.

10.1101/735241 — microbiology — Posted on 2019-08-18

1475 Genetic modifiers of risk and age at onset in GBA associated Parkinson disease and Lewy body dementia

Blauwendraat, C.; Reed, X.; Krohn, L.; Heilbron, K.; Bandres-Ciga, S.; Tan, M.; Gibbs, J. R.; Hernandez, D. G.; Kumaran, R.; Langston, R.; Bonet Ponce, L.; Alcalay, R.; Hassin-Baer, S.; Greenbaum, L.; Iwaki, H.; Leonard, H.; Grenn, F. P.; Ruskey, J. A.; Sabir, M.; Ahmed, S.; Makarious, M. B.; Pihlstrom, L.; Toft, M.; van Hilten, J. J.; Marinus, J.; Schulte, C.; Sharma, M.; Brockmann, K.; Siitonen, A.; Majamaa, K.; Eerola-Rautio, J.; Tienari, P.; The 23andMe Research Team, ; Pantelyat, A.; Hillis-Trupe, A.; Dawson, T.; Rosenthal, L.; Albert, M.; Resnick, S. M.; Ferrucci, L.; Morris, C. M.; Ple

10.1101/738351 — genetics — Posted on 2019-08-18

1476 Assessing digital phenotyping to enhance genetic studies of human diseases

DeBoever, C.; Tanigawa, Y.; Aguirre, M.; McInnes, G. M.; Lavertu, A.; Rivas, M. A.

10.1101/738856 — genetics — Posted on 2019-08-18

1477 Genetic structure of prey populations underlies the geographic mosaic of arms race coevolution

Hague, M.; Stokes, A.; Feldman, C.; Brodie, E.; Brodie, E.

10.1101/585851 — evolutionary biology — Posted on 2019-08-18

1478 Neural tube development depends on notochord-derived Sonic hedgehog released into the sclerotome

Kahane, N.; Kalcheim, C.

10.1101/639831 — developmental biology — Posted on 2019-08-18

1479 Two forms of Opa1 cooperate to complete fusion of the mitochondrial inner-membrane

Ge, Y.; Shi, X.; Boopathy, S.; McDonald, J.; Smith, A. W.; Chao, L. H.

10.1101/739078 — biophysics — Posted on 2019-08-18

1480 Assessment of computational methods for the analysis of single-cell ATAC-seq data

Chen, H.; Lareau, C.; Andreani, T.; Vinyard, M. E.; Garcia, S. P.; Clement, K.; Andrade-Navarro, M. A.; Buenrostro, J. D.; Pinello, L.

10.1101/739011 — bioinformatics — Posted on 2019-08-18

1481 Ancestral hybridisation facilitated species diversification in the Lake Malawi cichlid fish adaptive radiation

Svardal, H.; Quah, F. X.; Malinsky, M.; Ngatunga, B. P.; Miska, E. A.; Salzburger, W.; Genner, M.; Turner, G. F.; Durbin, R.

10.1101/738633 — evolutionary biology — Posted on 2019-08-18

1482 Does meiotic drive alter male mate preference?

Finnegan, S. R.; Nitsche, L.; Mondani, M.; Camus, M. F.; Fowler, K.; Pomiankowski, A.

10.1101/736595 — evolutionary biology — Posted on 2019-08-18

1483 Sex-specific transcriptomic responses to changes in the nutritional environment

Camus, M. F.; Piper, M. W.; Reuter, M.

10.1101/595686 — evolutionary biology — Posted on 2019-08-18

1484 Leptin promotes expression of EMT-related transcription factors and invasion in a Src and FAK-dependent pathway in MCF10A mammary epithelial cells

Olea-Flores, M.; Zuniga-Eulogio, M.; Tacuba-Saavedra, A.; Bueno-Salgado, M.; Sanchez-Carvajal, A.; Vargas-Santiago, Y.; Mendoza-Catalan, M. A.; Perez Salazar, E.; Garcia-Hernandez, A.; Padilla-Benavides, T.; Navarro-Tito, N.

10.1101/739169 — cell biology — Posted on 2019-08-18

1485 Sirolimus plus nintedanib treats vascular pathology in HHT mouse models

Ruiz, S.; Zhao, H.; Chandakkar, P.; Papoin, J.; Choi, H.; Nomura-Kitabayashi, A.; Patel, R.; Gillen, M.; Diao, L.; Chatterjee, P.; He, M.; Al-Abed, Y.; Wang, P.; Metz, C.; Oh, S. P.; Blanc, L.; Campagne, F.; Marambaud, P.

10.1101/739144 — cell biology — Posted on 2019-08-18

1486 Mitochondrial protein interaction landscape of SS-31

Chavez, J. D.; Tang, X.; Campbell, M. D.; Reyes, G.; Kramer, P. A.; Stuppard, R.; Keller, A.; Marcinek, D. J.; Bruce, J. E.

10.1101/739128 — systems biology — Posted on 2019-08-18

1487 Two forms of Opa1 cooperate to complete fusion of the mitochondrial inner-membrane

Chao, L. H.; Ge, Y.; Shi, X.; Boopathy, S.; McDonald, J.; Smith, A. W.

10.1101/739078 — biophysics — Posted on 2019-08-18

1488 Optogenetic control of protein binding using light-switchable nanobodies

Gil, A. A.; Zhao, E. M.; Wilson, M. Z.; Goglia, A. G.; Carrasco-Lopez, C.; Avalos, J. L.; Toettcher, J. E.

10.1101/739201 — biochemistry — Posted on 2019-08-18

1489 Urinary glucocorticoids in harbour seal (Phoca vitulina) pups during rehabilitation

Wilson, S. C.; Villanueva, S.; Dmitrieva, L.; Hayes, W.; Smyth, W.

10.1101/549386 — zoology — Posted on 2019-08-17

1490 Time elapsed between Zika and dengue virus type 2 infections alters the magnitude of antibody and T cell responses but not viremia in rhesus macaques

10.1101/621094 — microbiology — Posted on 2019-08-17

1491 A cytomegalovirus immunevasin triggers integrated stress response-dependent reorganization of the endoplasmic reticulum.

Zhang, H.; Read, C.; Nguyen, C. C.; Siddiquey, M. N. A.; Shang, C.; Hall, C. M.; von Einem, J.; Kamil, J. P.

10.1101/641068 — microbiology — Posted on 2019-08-17

1492 Breaking down defenses: Quantitative analysis of malaria infection dynamics reveals distinct immune defense strategies

Wale, N.; Jones, M. J.; Sim, D. G.; Read, A. F.; King, A. A.

10.1101/648428 — ecology — Posted on 2019-08-17

1493 Expression profiling of the mature C. elegans nervous system by single-cell RNA-Sequencing

Taylor, S. R.; Santpere, G.; Reilly, M.; Glenwinkel, L.; Poff, A.; McWhirter, R.; Xu, C.; Weinreb, A.; Basavaraju, M.; Cook, S. J.; Barrett, A.; Abrams, A.; Vidal, B.; Cros, C.; Rafi, I.; Sestan, N.; Hammarlund, M.; Hobert, O.; Miller, D. M.

10.1101/737577 — neuroscience — Posted on 2019-08-17

1494 In the presence of population structure: From genomics to candidate genes underlying local adaptation

Price, N.; Lopez, L.; Platts, A. E.; Lasky, J. R.; McKay, J. K.

10.1101/642306 — evolutionary biology — Posted on 2019-08-17

1495 Optogenetic inhibition of Delta reveals digital Notch signaling output during tissue differentiation

Viswanathan, R.; Necakov, A.; Trylinski, M.; Harish, R. K.; Krueger, D.; Esposito, E.; Schweisguth, F.; Neveu, P.; De Renzis, S.

10.1101/738039 — developmental biology — Posted on 2019-08-17

1496 Linear mapping of region-to-region connectivity as a basic principle of visual and prefrontal functional organization alike

O'Rawe, J. F.; Leung, H.-C.

10.1101/549345 — neuroscience — Posted on 2019-08-17

1497 Big data analysis of all bacterial genomes establishes a triple whammy of carbapenemases, ICEs and multiple clinically-relevant bacteria

Botelho, J.; Mourao, J.; Roberts, A. P.; Peixe, L. V.

10.1101/678748 — microbiology — Posted on 2019-08-17

1498 Mutant lamins cause nuclear envelope rupture and DNA damage in skeletal muscle cells

Earle, A. J.; Kirby, T. J.; Fedorchak, G. R.; Isermann, P.; Patel, J.; Iruvanti, S.; Moore, S. A.; Bonne, G.; Wallrath, L. L.; Lammerding, J.

10.1101/364778 — cell biology — Posted on 2019-08-17

1499 YAP1 Oncogene is a Context-specific Driver for Pancreatic Ductal Adenocarcinoma

Tu, B.; Yao, J.; Ferri-Borgogno, S.; Zhao, J.; Chen, S.; Wang, Q.; Yan, L.; Zhou, X.; Zhu, C.; Bang, S.; Chang, Q.; Bristow, C. A.; Kang, Y.; Zheng, H.; Wang, H.; Fleming, J. B.; Kim, M.; Heffernan, T. P.; Draetta, G. F.; Pan, D.; Maitra, A.; Yao, W.; Gupta, S.; Ying, H.

10.1101/270314 — cancer biology — Posted on 2019-08-17

1500 Cryo-EM structures of alpha-synuclein fibrils with the H50Q hereditary mutation reveal new polymorphs

Boyer, D. R.; Li, B.; Sun, C.; Fan, W.; Sawaya, M. R.; Jiang, L.; Eisenberg, D. S.

10.1101/738450 — biochemistry — Posted on 2019-08-17

1501 Modelling geospatial distributions of the triatomine vectors of Trypanosoma cruzi in Latin America

Bender, A.; Python, A.; Lindsay, S.; Golding, N.; Moyes, C. L.

10.1101/738310 — ecology — Posted on 2019-08-17

1502 A Transient Intermediate Populated in Prion Folding Leads to Domain Swapping

Mondal, B.; Reddy, G.

10.1101/724666 — biophysics — Posted on 2019-08-17

1503 Quantitative profiling of 1-Carbon Metabolites, Amino Acids and Precursors, and Plasmalogens in human plasma using Ultra-High-Pressure Liquid Chromatography coupled with Tandem Mass Spectrometry and robotic compound extraction

Andraos, S.; Goy, M.; Albert, B.; Kussmann, M.; Thorstensen, E.; O'Sullivan, J. M.

10.1101/738864 — biochemistry — Posted on 2019-08-17

1504 Ecological and evolutionary insights into pathogenic and non-pathogenic rice associated Xanthomonas

Bansal, K.; Midha, S.; Kumar, S.; Kaur, A.; Sonti, R. V.; Patil, P. B.

10.1101/453373 — evolutionary biology — Posted on 2019-08-17

1505 S. pombe DNA translocases Rrp1 and Rrp2 have distinct roles at centromeres and telomeres that ensure genome stability.

Barg-Wojas, A.; Schirmeisen, K.; Muraszko, J.; Kramarz, K.; Baranowska, G.; Carr, A. M.; Dziadkowiec, D.

10.1101/738435 — cell biology — Posted on 2019-08-16

1506 Role of the imprinted allele of the p57Kip2 gene in mouse neocortical development

Imaizumi, Y.; Furutachi, S.; Watanabe, T.; Miya, H.; Kawaguchi, D.; Gotoh, Y.

10.1101/737692 — developmental biology — Posted on 2019-08-16

1507 A negative autoregulation network motif is required for synchronized Myxococcus xanthus development

McLaughlin, P. T.; Higgs, P. I.

10.1101/738716 — developmental biology — Posted on 2019-08-16

1508 Multiclass Disease Classification from Microbial Whole-Community Metagenomes using Graph Convolutional Neural Networks.

Khan, S.; Kelly, L.

10.1101/726901 — bioinformatics — Posted on 2019-08-16

1509 Structural complementarity facilitates E7820-mediated degradation of RBM39 by DCAF15

Faust, T.; Yoon, H.; Nowak, R. P.; Donovan, K. A.; Li, Z.; Cai, Q.; Eleuteri, N. A.; Zhang, T.; Gray, N. S.; Fischer, E. S.

10.1101/738534 — biochemistry — Posted on 2019-08-16

1510 Penetrance of Parkinson’s disease in LRRK2 p.G2019S carriers is modified by a polygenic risk score

Iwaki, H.; Blauwendraat, C.; Makarious, M. B.; Bandres-Ciga, S.; Leonard, H. L.; Gibbs, J. R.; Hernandez, D. G.; Scholz, S. W.; Faghri, F.; Nalls, M. A.; Singleton, A. B.; International Parkinson Disease Genomics Consortium (IPDGC),

10.1101/738260 — genetics — Posted on 2019-08-16

1511 Telomere-to-telomere assembly of a complete human X chromosome

Miga, K. H.; Koren, S.; Rhie, A.; Vollger, M. R.; Gershman, A.; Bzikadze, A.; Brooks, S.; Howe, E.; Porubsky, D.; Logsdon, G. A.; Schneider, V. A.; Potapova, T.; Wood, J.; Chow, W.; Armstrong, J.; Fredrickson, J.; Pak, E.; Tigyi, K.; Kremitzki, M.; Markovic, C.; Maduro, V.; Dutra, A.; Bouffard, G. G.; Chang, A. M.; Hansen, N. F.; Thibaud-Nissen, F.; Schmitt, A. D.; Belton, J.-M.; Selvaraj, S.; Dennis, M. Y.; Soto, D. C.; Sahasrabudhe, R.; Kaya, G.; Quick, J.; Loman, N. J.; Holmes, N.; Loose, M.; Surti, U.; Risques, R. a.; Lindsay, T. A. G.; Fulton, R.; Hall, I.; Paten, B.; Howe, K.; Timp, W.;

10.1101/735928 — bioinformatics — Posted on 2019-08-16

1512 Global H-NS counter-silencing by LuxR activates quorum sensing gene expression

Chaparian, R. R.; Tran, M. L.; Miller Conrad, L. C.; Rusch, D. B.; van Kessel, J. C.

10.1101/738146 — microbiology — Posted on 2019-08-16

1513 Finding structure in multi-armed bandits

Schulz, E.; Franklin, N. T.; Gershman, S. J.

10.1101/432534 — animal behavior and cognition — Posted on 2019-08-16

1514 An amino-terminal threonine/serine motif is necessary for activity of the Crp/Fnr homolog, MrpC, and for Myxococcus xanthus developmental robustness

Feeley, B. E.; McLaughlin, P. T.; Diggs, S.; Blaha, G. M.; Higgs, P. I.

10.1101/737593 — microbiology — Posted on 2019-08-16

1515 Considering founding and variable genomes is critical in studying polyploid evolution

Ye, X.; Hu, H.; Zhou, H.; Jiang, Y.; Gao, S.; Yuan, Z.; Stiller, J.; Li, C.; Chen, G.; Liu, Y.; Wei, Y.; Zheng, Y.; Liu, C.

10.1101/738229 — evolutionary biology — Posted on 2019-08-16

1516 Head Mesoderm Tissue Growth, Dynamics and Neural Crest Cell Migration

McKinney, M. C.; McLennan, R.; Giniunaite, R.; Baker, R. E.; Maini, P. K.; Othmer, H. G.; Kulesa, P.

10.1101/738542 — developmental biology — Posted on 2019-08-16

1517 Crystal structure of the TbBILBO1 N-terminal domain reveals a ubiquitin fold with a long rigid loop for the binding of its partner

Dong, G.

10.1101/738153 — biochemistry — Posted on 2019-08-16

1518 Formate induces a metabolic switch in nucleotide and energy metabolism

Oizel, K.; Tait-Mulder, J.; Fernandez-de-Cossio-Diaz, J.; Pietzke, M.; Brunton, H.; Dhayade, S.; Athineos, D.; Lilla, S.; Rodriguez Blanco, G.; Sumpton, D.; Mackay, G. M.; Blyth, K.; Zanivan, S.; Meiser, J.; Vazquez, A.

10.1101/738302 — biochemistry — Posted on 2019-08-16

1519 Context-Dependent and Dynamic Functional Influence of Corticothalamic Pathways to First- and Higher-order Visual Thalamus

Kirchgessner, M. A.; Franklin, A. D.; Callaway, E. M.

10.1101/738203 — neuroscience — Posted on 2019-08-16

1520 A role of oligodendrocytes in information processing independent of conduction velocity

Moore, S.; Meschkat, M.; Ruhwedel, T.; Tzvetanova, I. D.; Trevisiol, A.; Battefeld, A.; Kusch, K.; Kole, M.; Strenzke, N.; Möbius, W.; de Hoz, L.; Nave, K.-A.

10.1101/736975 — neuroscience — Posted on 2019-08-16

1521 The euchromatic histone mark H3K36me3 preserves heterochromatin through sequestration of an acetyltransferase complex in fission yeast

Georgescu, P. R.; Capella, M.; Fischer-Burkart, S.; Braun, S.

10.1101/738096 — genetics — Posted on 2019-08-16

1522 Exploiting epistasis to perturb the evolution of antibiotic resistance

Lukacisinova, M.; Fernando, B.; Bollenbach, T.

10.1101/738252 — evolutionary biology — Posted on 2019-08-16

1523 Hingepoints and neural folds reveal conserved features of primary neurulation in the zebrafish forebrain

Werner, J. M.; Negesse, M. Y.; Brooks, D. L.; Caldwell, A. R.; Johnson, J. M.; Brewster, R.

10.1101/738161 — developmental biology — Posted on 2019-08-16

1524 The basal level of gene expression associated with chromatin loosening shapes Waddington landscapes and controls cell differentiation

Flouriot, G.; Jehanno, C.; le Page, Y.; le Goff, P.; Boutin, B.; Michel, D.

10.1101/738120 — cell biology — Posted on 2019-08-16

1525 How squirrels protect their caches: Location, conspicuousness during caching, and proximity to kin influence cache lifespan

Delgado, M. M.; Jacobs, L. F.

10.1101/738237 — animal behavior and cognition — Posted on 2019-08-16

1526 Penetrance of Parkinson’s disease in LRRK2 p.G2019S carriers is modified by a polygenic risk score

Iwaki, H.; Blauwendraat, C.; Makarious, M. B.; Bandres-Ciga, S.; Leonard, H. L.; Gibbs, J. R.; Hernandez, D. G.; Scholz, S. W.; Faghri, F.; Nalls, M. A.; Singleton, A. B.

10.1101/738260 — genetics — Posted on 2019-08-16

1527 KLF4 acts as a tumor suppressor in human B-cells and patients’ B-cell leukemias growing in mice

Liu, W.-H.; Mrozek-Gorska, P.; Herold, T.; Schwarzkopf, L.; Pich, D.; Völse, K.; Wirth, A.-K.; Melo-Narvaez, M. C.; Carlet, M.; Hammerschmidt, W.; Jeremias, I.

10.1101/737726 — cancer biology — Posted on 2019-08-16

1528 Unexpected differences in the pharmacokinetics of N-acetyl DL-leucine enantiomers after oral dosing and their clinical relevance

Churchill, G. C.; Strupp, M.; Galione, A.; Platt, F. M.

10.1101/738286 — pharmacology and toxicology — Posted on 2019-08-16

1529 Meta-analysis of problematic alcohol use in 435,563 individuals identifies 29 risk variants and yields insights into biology, pleiotropy and causality

Zhou, H.; Sealock, J. M.; Sanchez-Roige, S.; Clarke, T.-K.; Levey, D.; Cheng, Z.; Li, B.; Polimanti, R.; Kember, R. L.; Smith, R. V.; Thygesen, J. H.; Morgan, M. Y.; Atkinson, S. R.; Thursz, M. R.; Nyegaard, M.; Mattheisen, M.; Borglum, A. D.; Johnson, E. C.; the VA Million Veteran Program, ; Justice, A. C.; Palmer, A. A.; McQuillin, A.; Davis, L. K.; Edenberg, H. J.; Agrawal, A.; Kranzler, H. R.; Gelernter, J.

10.1101/738088 — genetics — Posted on 2019-08-16

1530 CXCR4 allows T cell acute lymphoblastic leukemia to escape from JAK1/2 and BCL2 inhibition through CNS infiltration

Walker, K. L.; Kabakov, S. A.; Zhu, F.; Bouchlaka, M. N.; Olson, S. L.; Cho, M. M.; Quamine, A. E.; Feils, A. S.; Gavcovich, T. B.; Rui, L.; Capitini, C. M.

10.1101/734913 — cancer biology — Posted on 2019-08-16

1531 Optogenetic inhibition of Delta reveals digital Notch signaling output during tissue differentiation

De Renzis, S.; Viswanathan, R.; Necakov, A.; Trylinski, M.; Harish, R. K.; Krueger, D.; Esposito, E.; Schweisguth, F.; Neveu, P.

10.1101/738039 — developmental biology — Posted on 2019-08-16

1532 ExtendAlign: the post-analysis tool to correct and improve the alignment of dissimilar short sequences

Flores-Torres, M.; Gomez-Romero, L.; Hasse-Hernandez, J. I.; Aguilar-Ordonez, I.; Tovar, H.; Avendano-Vazquez, S. E.; Flores-Jasso, C. F.

10.1101/475707 — bioinformatics — Posted on 2019-08-16

1533 Motor improvement estimation and task adaptation for personalized robot-aided therapy: a feasibility study

Giang, C.; Pirondini, E.; Kinany, N.; Pierella, C.; Panarese, A.; Coscia, M.; Miehlbradt, J.; Magnin, C.; Nicolo, P.; Guggisberg, A.; Micera, S.

10.1101/728725 — bioengineering — Posted on 2019-08-16

1534 Convolutional Neural Network Analysis of Social Novelty Preference using DeepLabCut

Worley, N. B.; Djerdjaj, A.; Christianson, J. P.

10.1101/736983 — animal behavior and cognition — Posted on 2019-08-16

1535 Spectral cues are necessary for encoding the azimuthal map of auditory space in the mouse superior colliculus

Ito, S.; Si, Y.; Feldheim, D. A.; Litke, A. M.

10.1101/704031 — neuroscience — Posted on 2019-08-16

1536 Inferring the landscape of recombination using recurrent neural networks

Adrion, J. R.; Galloway, J. G.; Kern, A. D.

10.1101/662247 — evolutionary biology — Posted on 2019-08-16

1537 Expression profiling of the mature C. elegans nervous system by single-cell RNA-Sequencing

10.1101/737577 — neuroscience — Posted on 2019-08-16

1538 The Safety and Efficacy of Transdermal Auricular Vagal Nerve Stimulation Earbud Electrodes for Modulating Autonomic Arousal, Attention, Sensory Gating, and Cortical Brain Plasticity in Humans.

Tyler, W. J.; Wyckoff, S.; Hearn, T.; Hool, N.

10.1101/732529 — neuroscience — Posted on 2019-08-16

1539 Drifting codes within a stable coding scheme for working memory

Wolff, M. J.; Jochim, J.; Akyurek, E. G.; Buschman, T. J.; Stokes, M. G.

10.1101/714311 — neuroscience — Posted on 2019-08-16

1540 A broad-host-range CRISPRi toolkit for silencing gene expression in Burkholderia

Hogan, A. M.; Rahman, A. S. M. Z.; Lightly, T. L.; Cardona, S. T.

10.1101/618413 — microbiology — Posted on 2019-08-16

1541 Blood meal analysis of tsetse flies (Glossina pallidipes: Glossinidae) reveals a reduction in host fidelity when feeding on domestic compared to wild hosts

Channumsin, M.; Ciosi, M.; Masiga, D.; Auty, H.; Turner, C. M.; Mable, B. K.

10.1101/692053 — evolutionary biology — Posted on 2019-08-16

1542 Chemotaxis and swarming in differentiated HL60 neutrophil-like cells

Babatunde, K. A.; Wang, X.; Hopke, A.; Mantel, P.-Y.; Irimia, D.

10.1101/714345 — cell biology — Posted on 2019-08-16

1543 Deep Learning Approach to Identifying Breast Cancer Subtypes Using High-Dimensional Genomic Data

Chen, R.; Yang, L.; Goodison, S.; Sun, Y.

10.1101/629865 — bioinformatics — Posted on 2019-08-16

1544 Extended hormone-phenotypes shape the structure, stability, and assortment of social networks

Dakin, R.; Moore, I. T.; Horton, B. M.; Vernasco, B. J.; Ryder, T. B.

10.1101/737650 — animal behavior and cognition — Posted on 2019-08-16

1545 Freeze-frame imaging of synaptic activity using SynTagMA

Perez-Alvarez, A.; Fearey, B.; O'Toole, R. J.; Yang, W.; Arganda-Carreras, I.; Lamothe-Molina, P. J.; Moeyaert, B.; Mohr, M. A. A.; Panzera, L. C.; Schulze, C.; Schreiter, E. R.; Wiegert, J. S.; Gee, C. E.; Hoppa, M. B.; Oertner, T. G.

10.1101/538041 — neuroscience — Posted on 2019-08-16

1546 Modeling and treating GRIN2A developmental and epileptic encephalopathy in mice

Amador, A.; Bostick, C. D.; Olson, H.; Peters, J.; Camp, C. R.; Krizay, D.; Chen, W.; Han, W.; Tang, W.; Kanber, A.; Kim, S.; Teoh, J. J.; Petri, S.; Paek, H.; Kim, H.-O. A.; Lutz, C. M.; Yang, M.; Myers, S. J.; Bhattacharya, S.; Yuan, H.; Goldstein, D. B.; Poduri, A.; Boland, M. J.; Traynelis, S. F.; Frankel, W.

10.1101/737239 — neuroscience — Posted on 2019-08-16

1547 Caffeine boosts preparatory attention for reward-related stimulus information

van den Berg, B.; de Jong, M.; Woldorff, M. G.; Lorist, M. M.

10.1101/697177 — neuroscience — Posted on 2019-08-16

1548 Incorporating neuronal fatigue in deep neural networks captures dynamics of adaptation in neurophysiology and perception

Vinken, K.; Boix, X.; Kreiman, G.

10.1101/642777 — neuroscience — Posted on 2019-08-16

1549 Psychophysical Scaling Reveals a Unified Theory of Visual Memory Strength

Schurgin, M. W.; Wixted, J. T.; Brady, T. F.

10.1101/325472 — neuroscience — Posted on 2019-08-16

1550 Museum epigenomics: characterizing cytosine methylation in historic museum specimens

Rubi, T. L.; Knowles, L. L.; Dantzer, B.

10.1101/620583 — genomics — Posted on 2019-08-16

1551 Primary cilia dysfunction as a novel pathogenic mechanism of prenatal alcohol-induced birth defects

Boschen, K. E.; Fish, E. W.; Parnell, S. E.

10.1101/649673 — developmental biology — Posted on 2019-08-16

1552 Molecular Profiles of Matched Primary and Metastatic Tumor Samples Support a Linear Evolutionary Model of Breast Cancer

Chen, R.; Goodison, S.; Sun, Y.

10.1101/667303 — bioinformatics — Posted on 2019-08-16

1553 Telomere-to-telomere assembly of a complete human X chromosome

10.1101/735928 — bioinformatics — Posted on 2019-08-16

1554 PuMA: a papillomavirus genome annotation tool

Pace, J. S.; Youens-Clark, K.; Freeman, C. J.; Hurwitz, B. L.; Van Doorslaer, K.

10.1101/736991 — genomics — Posted on 2019-08-16

1555 Xanthomonas sontii sp. nov., a non-pathogenic bacterium isolated from healthy basmati rice (Oryza sativa) seeds from India

Bansal, K.; Kaur, A.; Midha, S.; Kumar, S.; Korpole, S.; Patil, P. B.

10.1101/738047 — evolutionary biology — Posted on 2019-08-16

1556 A personalised approach for identifying disease-relevant pathways in heterogeneous diseases

Somani, J.; Ramchandran, S.; Lähdesmäki, H.

10.1101/738062 — systems biology — Posted on 2019-08-16

1557 ADAMTS-family protease MIG-17 regulates synaptic allometry by modifying the extracellular matrix and modulating glia morphology during growth

Ji, T.; Wang, K.; Fan, J.; Huang, J.; Wang, M.; Dong, X.; Shi, Y.; Manning, L.; Zhang, X.; Shao, Z.; Colon-Ramos, D. A.

10.1101/734830 — neuroscience — Posted on 2019-08-16

1558 The scaling of genome size and cell size limits maximum rates of photosynthesis with implications for ecological strategies

Roddy, A.; Theroux-Rancourt, G.; Abbo, T.; Benedetti, J. W.; Brodersen, C. R.; Castro, M.; Castro, S.; Gilbride, A. B.; Jensen, B. M.; Jiang, G.-F.; Perkins, J. A.; Perkins, S. D.; Loureiro, J.; Syed, Z.; Thompson, R. A.; Kuebbing, S. E.; Simonin, K. A.

10.1101/619585 — ecology — Posted on 2019-08-16

1559 Characterizing allele-by-environment interactions using maize introgression lines

Li, Z.; Tirado, S. B.; Kadam, D. C.; Coffey, L.; Miller, N. D.; Spalding, E. P.; Lorenz, A. J.; de Leon, N.; Kaeppler, S. M.; Schnable, P. S.; Springer, N. M.; Hirsch, C. N.

10.1101/738070 — plant biology — Posted on 2019-08-16

1560 The Safety and Efficacy of Transdermal Auricular Vagal Nerve Stimulation Earbud Electrodes for Modulating Autonomic Arousal, Attention, Sensory Gating, and Cortical Brain Plasticity in Humans.

Tyler, W. J.; Wyckoff, S.; Hearn, T.; Hool, N.

10.1101/732529 — neuroscience — Posted on 2019-08-16

1561 Release of stem cells from quiescence reveals multiple gliogenic domains in the adult brain

Delgado, A.; Maldonado-Soto, A.; Silva-Vargas, V.; Mizrak, D.; von Kaenel, T.; Paul, A.; Madar, A.; Cuervo, H.; Kitajewski, J.; Lin, C.-S.; Doetsch, F.

10.1101/738013 — neuroscience — Posted on 2019-08-16

1562 Rad51 Interaction Analysis Reveals a Functional Interplay Among Recombination Auxiliary Factors

Argunhan, B.; Sakakura, M.; Afshar, N.; Kurihara, M.; Ito, K.; Maki, T.; Kanamaru, S.; Murayama, Y.; Tsubouchi, H.; Takahashi, M.; Takahashi, H.; Iwasaki, H.

10.1101/738179 — molecular biology — Posted on 2019-08-16

1563 Metagenomic characterization of creek sediment microbial communities from a major agricultural region in Salinas, California

Suttner, B.; Johnston, E. R.; Orellana, L. H.; Rodriguez-R, L. M.; Hatt, J.; Carychao, D.; Carter, M. Q.; Cooley, M. B.; Konstantinidis, K. T.

10.1101/737759 — microbiology — Posted on 2019-08-16

1564 Time-resolved single-cell transcriptomics uncovers dynamics of cardiac neutrophil diversity in murine myocardial infarction

Vafadarnejad, E.; Rizzo, G.; Krampert, L.; Arampatzi, P.; Nugroho, V. A.; Schulz, D. J.; Roesch, M.; Alayrac, P.; Vilar, J.; Silvestre, J.-S.; Zernecke, A.; Saliba, A.-E.; Cochain, C.

10.1101/738005 — immunology — Posted on 2019-08-16

1565 Nucleated transcriptional condensates amplify gene expression

Wei, M.-T.; Chang, Y.-C.; Shimobayashi, S. F.; Shin, Y.; Brangwynne, C. P.

10.1101/737387 — biophysics — Posted on 2019-08-16

1566 Organization of fast and slow chromatin revealed bysingle-nucleosome dynamics

Ashwin, S. S.; Nozaki, T.; Maeshima, K.; Sasai, M.

10.1101/737734 — biophysics — Posted on 2019-08-16

1567 A Nanoemulsion as an Effective Treatment Against Human Pathogenic Fungi

Garcia, A.; Fan, Y. Y.; Vellanki, S.; Huh, E. Y.; Vanegas, D.; Wang, S. H.; Lee, S. C.

10.1101/737767 — microbiology — Posted on 2019-08-16

1568 Retinal Vessels Detection Using Convolutional Neural Networks in Fundus Images

Islam, M. M.; Poly, T. N.; Li, Y.-C.

10.1101/737668 — bioinformatics — Posted on 2019-08-16

1569 Combining serological and contact data to derive target immunity levels for achieving and maintaining measles elimination

Funk, S.; Knapp, J. K.; Lebo, E.; Reef, S. E.; Dabbagh, A. J.; Kretsinger, K.; Jit, M.; Edmunds, W. J.; Strebel, P. M.

10.1101/201574 — epidemiology — Posted on 2019-08-16

1570 The paltry power of priors versus populations

Zhan, J.; Arking, D.; Bader, J. S.

10.1101/737676 — genetics — Posted on 2019-08-16

1571 Gene prediction in heterogeneous cancer tissues and establishment of Least Absolute Shrinking and Selection Operator model of lung squamous cell carcinoma.

Khaliq, A. M.; RG, S.; Rajamohan, M.

10.1101/737866 — bioinformatics — Posted on 2019-08-16

1572 Activation-induced deaminase is critical for the establishment of DNA methylation patterns prior to the germinal center reaction

Catala-Moll, F.; Weichenhan, D.; Lutsik, P.; Alvarez-Prado, A.; Rodriguez-Ubreva, J.; Klemann, C.; Speckmann, C.; Abolhassani, H.; Martinez-Gallo, M.; Dieli-Crimi, R.; Soler-Palacin, P.; Kracker, S.; Hammarstrom, L.; Durandy, A.; Grimbacher, B.; Plass, C.; Ballestar, E.

10.1101/737908 — immunology — Posted on 2019-08-16

1573 Population genomic SNPs from epigenetic RADs: gaining genetic and epigenetic data from a single established next-generation sequencing approach

Crotti, M.; Adams, C.; Elmer, K. R.

10.1101/737940 — genomics — Posted on 2019-08-16

1574 Modelling the effects of leaky predator-exclusion fences and their surrounding halo

Agarwal, K.; Bode, M.

10.1101/737924 — ecology — Posted on 2019-08-16

1575 The Signature Microbiota Driving Rumen Function Shifts in Goat Kids Introduced Solid Diet Regimes

lv, x.; Chai, J.; Diao, Q.; huang, w.; zhuang, y.; zhang, n.

10.1101/737775 — microbiology — Posted on 2019-08-16

1576 Comparative analysis reveals adaptive evolution of bat IFITMs and a novel antiviral determinant

Benfield, C. T. O.; Mazzon, M.; Tate, E.; Marsh, M.; Weston, S.; Mackenzie, F.; Holmes, E. C.; Kellam, P.; Teo, B. H.; Ritzefeld, M.; Smith, S.

10.1101/737841 — immunology — Posted on 2019-08-16

1577 LincRNA sequences are biased to counteract their translation

Brümmer, A.; Dreos, R.; Marques, A. C.; Bergmann, S.

10.1101/737890 — genomics — Posted on 2019-08-16

1578 Acute feeding disorder after oral RNAi exposure results in efficient pest control

Chikami, Y.; Kawaguchi, H.; Suzuki, T.; Yoshioka, H.; Sato, Y.; Yaginuma, T.; Niimi, T.

10.1101/737643 — molecular biology — Posted on 2019-08-16

1579 Entry by multiple picornaviruses is dependent on a pathway that includes TNK2, WASL and NCK1

Jiang, H.; Leung, C.; Tahan, S.; Wang, D.

10.1101/737635 — microbiology — Posted on 2019-08-16

1580 Evolved differences in cis and trans regulation between the maternal and zygotic mRNA complements in the Drosophila embryo

Cartwright, E. L.; Lott, S. E.

10.1101/737536 — evolutionary biology — Posted on 2019-08-16

1581 Query Combinators: Domain Specific Query Languages for Medical Research

Evans, C.; Simonov, K.

10.1101/737619 — bioinformatics — Posted on 2019-08-16

1582 Geometric purity, kinematic scaling and dynamic optimality in drawing movements beyond ellipses

Matic, A.; Gomez-Marin, A.

10.1101/737460 — animal behavior and cognition — Posted on 2019-08-16

1583 Impact of serum calcium levels on local and total body bone mineral density: A Mendelian randomization study and an age stratum analysis

Sun, J.-y.; Zhang, H.; Zhang, Y.; Wang, L.; Oh, J. R.; Sun, B.-l.; Liu, G.

10.1101/737585 — genetics — Posted on 2019-08-16

1584 Megacities as drivers of national outbreaks: the role of holiday travel in the spread of infectious diseases

Mahmud, A. S.; Kabir, M. I.; Engo-Monsen, K.; Tahmina, S.; Riaz, B. K.; Hossain, M. A.; Khanom, F.; Rahman, M. M.; Rahman, M. K.; Sharmin, M.; Hossain, D. M.; Yasmin, S.; Ahmed, M. M.; Lusha, M. A. F.; Buckee, C. O.

10.1101/737379 — ecology — Posted on 2019-08-16

gao, x.; xu, x.; li, w.; li, r.

10.1101/734574 — bioinformatics — Posted on 2019-08-16

1586 Interpretable factor models of single-cell RNA-seq via variational autoencoders

Svensson, V.; Pachter, L.

10.1101/737601 — bioinformatics — Posted on 2019-08-16

1587 Developmental dynamics are a proxy for selective pressures on alternatively polyadenylated isoforms

Levin, M.; Zalts, H.; Mostov, N.; Hashimshony, T.; Yanai, I.

10.1101/737551 — molecular biology — Posted on 2019-08-16

1588 Investigating dual Ca2+ modulation of the ryanodine receptor 1 by molecular dynamics simulation

Zheng, W.; Wen, H.

10.1101/736934 — biophysics — Posted on 2019-08-16

1589 Geomagnetic field absence influences adult body weight of a migratory insect, potentially through appetite regulation

Wan, G.; Jiang, S.; Zhang, M.; Zhao, J.; Zhang, Y.; Pan, W.; Sword, G. A.; Chen, F.

10.1101/737361 — animal behavior and cognition — Posted on 2019-08-16

1590 Over the rainbow: a practical guide for fluorophore selection in plant FRET experiments

Denay, G.; Schultz, P.; Hänsch, S.; Weidtkamp-Peters, S.; Simon, R.

10.1101/734616 — plant biology — Posted on 2019-08-16

1591 mTOR dependent transformed human cells have a distinct set of essential genes from bcr-abl transformed cells

Hall, M. N.; Benjamin, D.; Colombi, M.; Moroni, C.

10.1101/737817 — cell biology — Posted on 2019-08-16

1592 REM negatively predicts statistical learning but not other forms of gist

Matorina, N.; Poppenk, J.

10.1101/578492 — neuroscience — Posted on 2019-08-16

1593 A modular cloning toolkit for genome editing in plants

Hahn, F.; Korolev, A.; Sanjurjo Loures, L.; Nekrasov, V.

10.1101/738021 — plant biology — Posted on 2019-08-16

1594 CytoCensus: mapping cell identity and division in tissues and organs using machine learning

Hailstone, M.; Waithe, D.; Samuels, T. J.; Yang, L.; Costello, I.; Robertson, E. J.; Arava, Y.; Parton, R. M.; Davis, I.

10.1101/137406 — developmental biology — Posted on 2019-08-16

1595 Effects of daily L-dopa administration on learning and brain structure in older adults undergoing four weeks of cognitive training: a randomised, parallel-group, double-blind, placebo-controlled trial.

Lebedev, A. V.; Nilsson, J.; Lindstrom, J.; Fredborg, W.; Akenine, U.; Hillila, C.; Andersen, P.; Spulber, G.; de Lange, E. C.; van den Berg, D.-J.; Kivipelto, M.; Lovden, M.

10.1101/482679 — clinical trials — Posted on 2019-08-16

1596 Human body prediction of size and shape: a hormonal framework

van Vugt, J.

10.1101/722777 — cell biology — Posted on 2019-08-16

1597 Mycobacterium riyadhense clinical isolates provide insights into ancestry and adaptive evolution in tuberculosis

Guan, Q.; Garbati, M.; Mfarrej, S.; AlMutairi, T.; Smyth, A.; Singh, A.; Fagbo, S.; Browne, J.; urRahman, M. A.; Alruwaili, A.; Hoosen, A.; Nakajima, C.; Suzuki, Y.; Bhatt, A.; Gordon, S.; AlAsmari, F.; Pain, A.

10.1101/728923 — evolutionary biology — Posted on 2019-08-16

1598 Telomere-to-telomere assembly of a complete human X chromosome

10.1101/735928 — bioinformatics — Posted on 2019-08-16

1599 Asymmetrical diversification of the receptor-ligand interaction controlling self-incompatibility in Arabidopsis

Chantreau, M.; Poux, C.; Lensink, M. F.; Brysbaert, G.; Vekemans, X.; Castric, V.

10.1101/734079 — evolutionary biology — Posted on 2019-08-16

1600 Photobiomodulation Does Not Influence Maturation and Leads to Mild Improvements in Functional Healing of Mouse Achilles Tendons

Locke, R. C.; Lemmon, E. A.; Dudzinski, E.; Kopa, S. C.; Wayne, J. M.; Soulas, J. M.; De Taboada, L.; Killian, M. L.

10.1101/735092 — bioengineering — Posted on 2019-08-16

1601 Continuum descriptions of spatial spreading for heterogeneous cell populations: theory and experiment

Matsiaka, O.; Baker, R.; Simpson, M. J.

10.1101/705434 — biophysics — Posted on 2019-08-16

1602 Regulatory network analysis of Paneth cell and goblet cell enriched gut organoids using transcriptomics approaches

Treveil, A.; Sudhakar, P.; Matthews, Z. J.; Wrzesinski, T.; Jones, E. J.; Brooks, J.; Olbei, M.; Hautefort, I.; Hall, L. J.; Carding, S. R.; Mayer, U.; Powell, P. P.; Wileman, T.; Di Palma, F.; Haerty, W.; Korcsmaros, T.

10.1101/575845 — systems biology — Posted on 2019-08-16

1603 Combining multiple data sources in species distribution models while accounting for spatial dependence and overfitting with combined penalised likelihood maximisation

Renner, I.; Louvrier, J.; Gimenez, O.

10.1101/615583 — ecology — Posted on 2019-08-16

1604 Evaluation of 20 enset (Ensete ventricosum) landraces for response to Xanthomonas vasicola pv. musacearum infection

Muzemil, S.; Chala, A.; Tesfaye, B.; Studholme, D. J.; Grant, M.; Yemataw, Z.; Olango, T. M.

10.1101/736793 — plant biology — Posted on 2019-08-16

1605 Chromosomal Mcm2-7 distribution is a primary driver of genome replication timing in budding yeast, fission yeast and mouse

Foss, E. J.; Sripathy, S.; Gatobonton-Schwager, T.; Kwak, H.; Thiesen, A. H.; Lao, U.; Bedalov, A.

10.1101/737742 — genetics — Posted on 2019-08-16

1606 Cryo-EM structure of the human Mixed Lineage Leukemia-1 complex bound to the nucleosome

Park, S. h.; Ayoub, A.; Lee, Y. T.; Xu, J.; Kim, H.; Zhang, W.; Zhang, B.; An, S.; Zhang, Y.; Cianfrocco, M. A.; Su, M.; Dou, Y.; cho, u.-s.

10.1101/737478 — biochemistry — Posted on 2019-08-16

1607 The McdAB Carboxysome Positioning System is Widespread Among β-cyanobacteria

MacCready, J. S.; Basalla, J. L.; Vecchiarelli, A. G.

10.1101/737502 — microbiology — Posted on 2019-08-16

1608 Readthrough errors purge deleterious cryptic sequences, facilitating the birth of coding sequences

Kosinski, L.; Masel, J.

10.1101/737452 — evolutionary biology — Posted on 2019-08-16

1609 The Structural Basis of Indisulam-Mediated Recruitment of RBM39 to the DCAF15-DDB1-DDA1 E3 Ligase Complex

Bussiere, D. E.; Xie, L.; Shu, W.; Srinivas, H.; Shu, W.; Burke, A.; Be, C.; Zhao, J.; Godbole, A.; King, D.; Karki, R. G.; Hornak, V.; Xu, F.; Cobb, J.; Carte, N.; Frank, A. O.; Frommlet, A.; Graff, P.; Knapp, M.; Fazal, A.; Okram, B.; Jiang, S.; Michellys, P.-Y.; Beckwith, R.; Voshol, H.; Wiesmann, C.; Solomon, J.; Paulk, J.

10.1101/737510 — biophysics — Posted on 2019-08-16

1610 Cargo and Cell Specific Differences in Extracellular Vesicle Populations Identified by Multiplexed Immunofluorescent Analysis

Burbidge, K.; Zwikelmaier, V.; Cook, B.; Ispas, G.; Rademacher, D. J.; Campbell, E.

10.1101/735936 — cell biology — Posted on 2019-08-16

1611 Rhapsody: Pathogenicity prediction of human missense variants based on protein sequence, structure and dynamics

Ponzoni, L.; Oltvai, Z. N.; Bahar, I.

10.1101/737429 — bioinformatics — Posted on 2019-08-16

1612 TGFβ regulation of perilacunar/canalicular remodeling is sexually dimorphic

Dole, N. S.; Yee, C. S.; Mazur, C. M.; Acevedo, C.; Alliston, T.

10.1101/737395 — molecular biology — Posted on 2019-08-16

1613 N-terminal autoprocessing and acetylation of MARTX Makes-Caterpillars Floppy-like effector is stimulated by ADP-Ribosylation Factor 1 in advance of Golgi fragmentation

Herrera, A.; Muroski, J.; Sengupta, R.; Nguyen, H. H.; Agarwal, S.; Ogorzalek Loo, R. R.; Mattoo, S.; Loo, J. A.; Satchell, K. J. F.

10.1101/736421 — microbiology — Posted on 2019-08-16

1614 Diversification of CORVET tethers facilitates transport complexity in Tetrahymena thermophila

Sparvoli, D.; Zoltner, M.; Field, M.; Turkewitz, A.

10.1101/737247 — cell biology — Posted on 2019-08-16

1615 Broad spectrum antibiotic-degrading metallo-β-lactamases are phylogenetically diverse and widespread in the environment.

Monteiro Pedroso, M.; Waite, D.; Melse, O.; Wilson, L.; Mitic, N.; McGeary, R. P.; Antes, I.; Guddat, L. W.; Hugenholtz, P.; Schenk, G.

10.1101/737403 — biochemistry — Posted on 2019-08-16

1616 Screening and identification of MicroRNAs expressed in perirenal adipose tissue during rabbit growth

Wang, G.; Guo, G.; Tian, X.; Hu, S.; Du, K.; Mao, J.; Jia, X.; Chen, S.-y.; Wang, J.; Lai, S.

10.1101/737411 — developmental biology — Posted on 2019-08-16

1617 Humans Use Future Thinking to Exert Social Control

Na, S.; Chung, D.; Hula, A.; Jung, J.; Fiore, V. G.; Dayan, P.; Gu, X.

10.1101/737353 — neuroscience — Posted on 2019-08-16

1618 A Hedgehog-FGF signaling axis patterns anterior mesoderm during gastrulation

Guzzetta, A.; Koska, M.; Rowton, M.; Kweon, J.; Hidalgo, H.; Eckart, H.; Back, R.; Lozano, S.; Moon, A. M.; Basu, A.; Bressan, M.; Pott, S.; Moskowitz, I. P.

10.1101/736322 — developmental biology — Posted on 2019-08-16

1619 THINGS: A database of 1,854 object concepts and more than 26,000 naturalistic object images

Hebart, M. N.; Dickter, A. H.; Kidder, A.; Kwok, W. Y.; Corriveau, A.; Van Wicklin, C.; Baker, C. I.

10.1101/545954 — neuroscience — Posted on 2019-08-16

1620 Cortical excitation:inhibition imbalance causes abnormal brain network dynamics as observed in neurodevelopmental disorders

Markicevic, M.; Fulcher, B. D.; Lewis, C.; Helmchen, F.; Rudin, M.; Zerbi, V.; Wenderoth, N.

10.1101/492108 — neuroscience — Posted on 2019-08-16

1621 Differential dynamics of microbial community networks help identify microorganisms interacting with residue-borne pathogens: the case of Zymoseptoria tritici in wheat

Kerdraon, L.; Barret, M.; Laval, V.; Suffert, F.

10.1101/587667 — microbiology — Posted on 2019-08-16

1622 Investigating causal pathways between liability to ADHD and substance use, and liability to substance use and ADHD risk, using Mendelian randomization.

Treur, J. L.; Demontis, D.; Smith, G. D.; Sallis, H.; Richardson, T. G.; Wiers, R. W.; Borglum, A. D.; Verweij, K. J.; Munafo, M. R.

10.1101/524769 — genetics — Posted on 2019-08-16

1623 Directional coupling of slow and fast hippocampal gamma with neocortical alpha/beta oscillations in human episodic memory

Griffiths, B. J.; Parish, G.; Roux, F.; Michelmann, S.; van der Plas, M.; Kolibius, L. D.; Chelvarajah, R.; Rollings, D. T.; Sawlani, V.; Hamer, H.; Gollwitzer, S.; Kreiselmeyer, G.; Staresina, B.; Wimber, M.; Hanslmayr, S.

10.1101/305698 — neuroscience — Posted on 2019-08-16

1624 Limited selection on leaf traits in Danish grasslands

Damgaard, C.

10.1101/735472 — ecology — Posted on 2019-08-16

1625 SYNPLA: A synapse-specific method for identifying learning-induced synaptic plasticity loci

Dore, K.; Pao, Y.; Soria Lopez, J.; Aronson, S.; Zhan, H.; Ghosh, S.; Merrill, S.; Zador, A. M.; Malinow, R.; Kebschull, J. M.

10.1101/473314 — neuroscience — Posted on 2019-08-15

1626 Movement abilities and brain development in preschoolers born very preterm

Hasler, H. M.; Fuller, M. G.; Vaucher, Y. E.; Brown, T. T.; Stiles, J.; Dale, A. M.; Jernigan, T. L.; Akshoomoff, N.

10.1101/734319 — neuroscience — Posted on 2019-08-15

1627 Linking high GC content to the repair of double strand breaks in prokaryotic genomes

Weissman, J. L.; Fagan, W. F.; Johnson, P. L. F.

10.1101/544924 — microbiology — Posted on 2019-08-15

1628 The impact of Hurricane Michael on longleaf pine habitats in Florida

Zampieri, N. E.; Pau, S.; Okamoto, D. K.

10.1101/736629 — ecology — Posted on 2019-08-15

1629 Regulation of amino acid and nucleotide metabolism by crustacean hyperglycemic hormone in the muscle and hepatopancreas of the crayfish Procambarus clarkii

Lee, C.-Y.; Li, W.; Chiu, K.-H.

10.1101/736603 — zoology — Posted on 2019-08-15

1630 Evidence for influenza B virus hemagglutinin adaptation to the human host: high cleavability, acid-stability and preference for cool temperature

Laporte, M.; Stevaert, A.; Raeymaekers, V.; Boogaerts, T.; Nehlmeier, I.; Chiu, W.; Benkheil, M.; Vanaudenaerde, B.; Pöhlmann, S.; Naesens, L. M.

10.1101/736678 — microbiology — Posted on 2019-08-15

1631 Molecular assays to detect the presence and viability of Phytophthora ramorum and Grosmannia clavigera

Wong, B.; Leal, I.; Feau, N.; Dale, A.; Uzunovic, A.; Hamelin, R. C.

10.1101/736637 — microbiology — Posted on 2019-08-15

1632 A Maxent modelling with a geospatial approach for the Habitat suitability of Flamingos in an Evanescing Ramsar site (Sambhar Lake, India) over the changing climatic scenarios

Sharma, L.; Raj, A.; Divyansh, K.

10.1101/737056 — ecology — Posted on 2019-08-15

1633 State of pedestrian road safety in Uganda: are interventions failing or absent?

Osuret, J.; Namatovu, S.; Biribawa, C.; Balugaba, B. E.; Zziwa, E. B.; Muni, K.; Ningwa, A.; Oporia, F.; Mutto, M.; Kyamanywa, P.; Guwatudde, D.; Kobusingye, O.

10.1101/736488 — scientific communication and education — Posted on 2019-08-15

1634 A Causal Network Analysis of Neuromodulation in the Cortico-Subcortical Limbic Network

Qiao, S.; Brown, K. A.; Sedillo, J. I.; Ferrentino, B.; Pesaran, B.

10.1101/731547 — neuroscience — Posted on 2019-08-15

1635 Tandem Requirement for Full Renal D1R and D5R Activity

Rozyyev, S.; Crusan, A. P.; Tiu, A. C.; Jurgens, J. A.; Quion, J. M. B.; Asico, L. D.; Felder, R. A.; Villar, V. A. M.

10.1101/736611 — molecular biology — Posted on 2019-08-15

1636 Transcriptome-based Analysis of Tomato Genotypes Resistant to Bacterial spot (Xanthomonas perforans) Race T4

Shi, R.; Panthee, D. R.

10.1101/736660 — molecular biology — Posted on 2019-08-15

1637 Tritrophic interactions involving a dioecious fig tree, its fig pollinating wasp and fig nematodes

Jauharlina, J.; Oktarina, H.; Sriwati, R.; Kanzaki, N.; Quinnell, R. J.; Compton, S. G.

10.1101/736652 — ecology — Posted on 2019-08-15

1638 Fish larvae tackle the complex fluid-structure interactions of undulatory swimming with simple actuation

Voesenek, C.; Li, G.; Muijres, F.; Van Leeuwen, J. L.

10.1101/736587 — biophysics — Posted on 2019-08-15

1639 Quantitative trait loci (QTL) underlying phenotypic variation in bioethanol-related processes in Neurospora crassa.

Waters, J. C.; Jhaveri, D.; Biffinger, J. C.; Lee, K.

10.1101/736470 — microbiology — Posted on 2019-08-15

1640 Flow-induced symmetry breaking in growing bacterial biofilms

Pearce, P.; Song, B.; Skinner, D. J.; Mok, R.; Hartmann, R.; Singh, P. K.; Jeckel, H.; Oishi, J. S.; Drescher, K.; Dunkel, J.

10.1101/627208 — biophysics — Posted on 2019-08-15

1641 Statistical modeling, estimation, and remediation of sample index hopping in multiplexed droplet-based single-cell RNA-seq data

Farouni, R.; Djambazian, H.; Ragoussis, J.; Najafabadi, H. S.

10.1101/617225 — bioinformatics — Posted on 2019-08-15

1642 A way around the exploration-exploitation dilemma

Peterson, E. J.; Verstynen, T. V.

10.1101/671362 — animal behavior and cognition — Posted on 2019-08-15

1643 A quantitative method for proteome reallocation using minimal regulatory interventions

Lastiri-Pancardo, G.; Mercado-Hernandez, J. S.; Kim, J.; Jimenez, J. I.; Utrilla, J.

10.1101/733592 — synthetic biology — Posted on 2019-08-15

1644 Therapeutically Exploring Persister Metabolism In Bacteria

Mohiuddin, S. G.; Hoang, T.; Saba, A.; Karki, P.; Orman, M. A.

10.1101/737320 — microbiology — Posted on 2019-08-15

1645 Surfaceome dynamics during neuronal development and synaptic plasticity reveal system-wide surfaceome reorganization independent of global proteostasis

van Oostrum, M.; Campbell, B.; Mueller, M.; Pedrioli, P. G. A.; Tyagarajan, S. K.; Wollscheid, B.

10.1101/731083 — neuroscience — Posted on 2019-08-15

1646 Comparing the utility of in vivo transposon mutagenesis approaches in yeast species to infer gene essentiality

Levitan, A.; Gale, A. N.; Dalton, E. K.; Kozan, D. W.; Cunningham, K. W.; Sharan, R.; Berman, J.

10.1101/732552 — bioinformatics — Posted on 2019-08-15

1647 Proteomic and Biological Profiling of Extracellular Vesicles from Alzheimer’s Disease Human Brain Tissues

Muraoka, S.; DeLeo, A. M.; Sethi, M. K.; Yukawa-Takamatsu, K.; Yang, Z.; Ko, J.; Hogan, J. D.; Ruan, Z.; You, Y.; Wang, Y. K.; Medalla, M.; Ikezu, S.; Xia, W.; Gorantla, S.; Gendelman, H. E.; Issadore, D.; Zaia, J.; Ikezu, T.

10.1101/733477 — biochemistry — Posted on 2019-08-15

1648 Environmental influences on placental programming and offspring outcomes following maternal immune activation

Nunez Estevez, K. J.; Rondon-Ortiz, A. N.; Nguyen, J. Q. T.; Kentner, A. C.

10.1101/729228 — neuroscience — Posted on 2019-08-15

1649 A Drosophila Model of Pontocerebellar Hypoplasia Reveals a Critical Role for the RNA Exosome in Neurons

Morton, D. J.; Jalloh, B.; Kim, L.; Kremsky, I.; Le, T.; Nguyen, K. B.; Rounds, J. C.; Sterrett, M. C.; Brown, B.; Leung, S. W.; Fasken, M. B.; Moberg, K. H.; Corbett, A. H.

10.1101/727693 — genetics — Posted on 2019-08-15

1650 The transcription factor E2A drives neural differentiation in pluripotent cells

Rao, C.; Malaguti, M.; Mason, J.; Lowell, S.

10.1101/736033 — developmental biology — Posted on 2019-08-15

1651 Enduring consequences of perinatal fentanyl exposure in mice

Alipio, J. B.; Brockett, A. T.; Fox, M. E.; Tennyson, S. S.; deBettencourt, C. A.; El-Metwally, D.; Francis, N. A.; Kanold, P. O.; Lobo, M. K.; Roesch, M. R.; Keller, A.

10.1101/735464 — neuroscience — Posted on 2019-08-15

1652 Post-translational epigenetics: PRMT7 regulates RNA-binding capacity and protein stability to control Leishmania parasite virulence

Ferreira, T. R.; Dowle, A. A.; Parry, E.; Ferreira, E.; Kolokousi, F.; Larson, T.; Plevin, M. J.; Cruz, A. K.; Walrad, P. B.

10.1101/736736 — genetics — Posted on 2019-08-15

1653 Parallel changes in gut microbiome composition and function in parallel local adaptation and speciation

Rennison, D.; Rudman, S. M.; Schluter, D.

10.1101/736843 — evolutionary biology — Posted on 2019-08-15

1654 Integrin α6β4 is downregulated in mutant IDH1 oligodendrogliomas, promotes glioma growth, and associates with a worse outcome in glioma patients

Stewart, R.; Chen, M.; Mulkearns-Hubert, E.; Lathia, J.; O'Connor, K.; Horbinski, C.

10.1101/726489 — cancer biology — Posted on 2019-08-15

1655 Catecholaminergic axons in the neocortex of adult mice regrow following brain injury

Dougherty, S. E.; Kajstura, T. J.; Jin, Y.; Chan-Cortes, M. H.; Kota, A.; Linden, D.

10.1101/737072 — neuroscience — Posted on 2019-08-15

1656 Multifaceted adaptation of the neural decision process with prior knowledge of time constraints and stimulus probability

Kelly, S. P.; Corbett, E. A.; O'Connell, R. G.

10.1101/715318 — neuroscience — Posted on 2019-08-15

1657 Rapid Detection of Genetic Engineering, Structural Variation, and Antimicrobial Resistance Markers in Bacterial Biothreat Pathogens by Nanopore Sequencing

Gargis, A. S.; Cherney, B.; Conley, A. B.; McLaughlin, H. P.; Sue, D.

10.1101/730093 — microbiology — Posted on 2019-08-15

1658 Limited selection on leaf traits in Danish grasslands

Damgaard, C.

10.1101/735472 — ecology — Posted on 2019-08-15

1659 Temperature compensation in a small rhythmic circuit

Alonso, L. M.; Marder, E.

10.1101/716761 — neuroscience — Posted on 2019-08-15

1660 Evaluating and improving heritability models using summary statistics

Speed, D.; Holmes, J. B.; Balding, D. J.

10.1101/736496 — genetics — Posted on 2019-08-15

1661 Implicit perceptual memory can increase or decrease with ageing

Zhivago, K.; Sneha, L.; Ramesh, R. G.; Purokayastha, S.; Rao, N. P.; Murthy, A.; Arun, S.

10.1101/736579 — animal behavior and cognition — Posted on 2019-08-15

1662 Disentangling the impact of environmental and phylogenetic constraints on prokaryotic strain diversity

Maistrenko, O. M.; Mende, D. R.; Luetge, M.; Hildebrand, F.; Schmidt, T. S.; Li, S. S.; Coelho, L. P.; Huerta-Cepas, J.; Sunagawa, S.; Bork, P.

10.1101/735696 — genomics — Posted on 2019-08-15

1663 Measuring Perceptual Distance of Organismal Color Pattern using the Features of Deep Neural Networks

Wham, D. C.; Ezray, B. D.; Hines, H. M.

10.1101/736306 — evolutionary biology — Posted on 2019-08-15

1664 Shared neural codes for eye-gaze and valence

Pryluk, R.; Shohat, Y.; Morozov, A.; Friedman, D.; Taub, A. H.; Paz, R.

10.1101/736462 — neuroscience — Posted on 2019-08-15

1665 Cerebellar plasticity and associative memories are controlled by perineuronal nets

Carulli, D.; Broersen, R.; de Winter, F.; Muir, E. M.; Meskovic, M.; de Waal, M.; de Vries, S.; Boele, H.-J.; Canto, C. B.; De Zeeuw, C. I.; Verhaagen, J.

10.1101/736694 — neuroscience — Posted on 2019-08-15

1666 Extreme genome selection towards complete antimicrobial resistance in a nosocomial strain of Stenotrophomonas maltophilia complex

Kumar, S.; Bansal, K.; Patil, P. P.; Kaur, A.; Kaur, S.; Gautam, V.; Patil, P. B.

10.1101/735555 — genomics — Posted on 2019-08-15

1667 Heterogeneous transcriptome response to DNA damage at single cell resolution.

Park, S. R.; Namkoong, S.; Zhang, Z. Z.; Friesen, L.; Chen, Y.-C.; Yoon, E.; Kim, C. H.; Kwak, H.; Kang, H. M.; Lee, J. H.

10.1101/737130 — cell biology — Posted on 2019-08-15

1668 Analyzing and comparing the radius of gyration and hydrodynamic radius in conformational ensembles of intrinsically disordered proteins

Ahmed, M. C.; Crehuet, R.; Lindorff-Larsen, K.

10.1101/679373 — biophysics — Posted on 2019-08-15

1669 Detecting Inversions with PCA in the Presence of Population Structure

Nowling, R. J.; Manke, K. R.; Emrich, S. J.

10.1101/736900 — bioinformatics — Posted on 2019-08-15

1670 Size and mass prediction of almond kernels using machine learning image processing

Vidyarthi, S. K.; Tiwari, R.; Singh, S. K.

10.1101/736348 — bioengineering — Posted on 2019-08-15

1671 The Metabolic Effects of Angiopoietin-like protein 8 (ANGPLT8) are Differentially Regulated by Insulin and Glucose in Adipose Tissue and Liver and are Controlled by AMPK Signaling

Zhang, L.; Shannon, C. E.; Bakewell, T. M.; Abdul-Ghani, M.; Fourcaudot, M.; Norton, L.

10.1101/734954 — physiology — Posted on 2019-08-15

1672 Single unit activity in marmoset posterior parietal cortex in a gap saccade task

Ma, L.; Selvanayagam, J.; Ghahremani, M.; Hayrynen, L. K.; Johnston, K.; Everling, S.

10.1101/737312 — neuroscience — Posted on 2019-08-15

1673 Reward prediction errors create event boundaries in memory

Rouhani, N.; Norman, K. A.; Niv, Y.; Bornstein, A. M.

10.1101/725440 — neuroscience — Posted on 2019-08-15

1674 Sensitivity of the paired motor unit analysis for estimation of motoneuron excitability to commonly used constraints and filters

Hassan, A. S.; Thompson, C. K.; Negro, F.; Cummings, M.; Powers, R. K.; Heckman, C. J.; Dewald, J. P.; McPherson, L. M.

10.1101/732982 — neuroscience — Posted on 2019-08-15

1675 Automated characterization of noise distributions in diffusion MRI data

St-Jean, S.; De Luca, A.; Tax, C. M. W.; Viergever, M. A.; Leemans, A.

10.1101/686436 — neuroscience — Posted on 2019-08-15

1676 The relationship between subjective sleep quality and cognitive performance in healthy young adults: Evidence from three empirical studies

Zavecz, Z.; Nagy, T.; Galko, A.; Nemeth, D.; Janacsek, K.

10.1101/328369 — neuroscience — Posted on 2019-08-15

1677 Cellular heterogeneity and lineage restriction during mouse digit tip regeneration at single cell resolution

Johnson, G. L.; Masias, E. J.; Lehoczky, J. A.

10.1101/737023 — molecular biology — Posted on 2019-08-15

1678 Plasmodium vivax Malaria viewed through the lens of an eradicated European strain

van Dorp, L.; Gelabert, P.; Rieux, A.; de Manuel, M.; d-Dios, T.; Gopalakrishnan, S.; Caroe, C.; Sandoval-Velasco, M.; Fregel, R.; Olalde, I.; Escosa, R.; Aranda, C.; Huijben, S.; Mueller, I.; Marques-Bonet, T.; Balloux, F.; Gilbert, M. T. P.; Lalueza-Fox, C.

10.1101/736702 — genetics — Posted on 2019-08-15

1679 Stabilization of extensive fine-scale diversity by spatio-temporal chaos

Pearce, M. T.; Agarwala, A.; Fisher, D. S.

10.1101/736215 — ecology — Posted on 2019-08-15

1680 A DNA G-quadruplex/i-motif hybrid

Chu, B.; Zhang, D.; Paukstelis, P. J.

10.1101/737296 — biochemistry — Posted on 2019-08-15

1681 DeepLabCut Analysis of Social Novelty Preference

Worley, N. B.; Djerdjaj, A.; Christianson, J. P.

10.1101/736983 — animal behavior and cognition — Posted on 2019-08-15

1682 Evaluation of 20 enset (Ensete ventricosum) landraces for response to Xanthomonas vasicola pv. musacearum infection

Muzemil, S.; Chala, A.; Tesfaye, B.; Studholme, D. J.; Grant, M.; Yemataw, Z.; Olango, T. M.

10.1101/736793 — plant biology — Posted on 2019-08-15

1683 Effects of Topical Antimicrobial Formulations on Pseudomonas aeruginosa Biofilm in an In vivo Porcine Burn Wound Model

Kalan, L.; Davis, S. C.; Solis, M.; Gil, J.; Valdes, J.; Higa, A.; Metzger, S. A.

10.1101/737338 — microbiology — Posted on 2019-08-15

1684 Haplotype genetic score analysis in 10,734 mother/infant pairs reveals complex maternal and fetal genetic effects underlying the associations between maternal phenotypes, birth outcomes and adult phenotypes

Chen, J.; Bacelis, J.; Navais, P. S.; Srivastava, A.; Juodakis, J.; Rouse, A.; Hallman, M.; Teramo, K.; Melbye, M.; Feenstra, B.; Freathy, R. M.; Davey-Smith, G.; Lawlor, D. A.; Murray, J. C.; Williams, S. M.; Jacobsson, B.; Muglia, L. J.; Zhang, G.

10.1101/737106 — genetics — Posted on 2019-08-15

1685 A CRISPR-based method for measuring the essentiality of a gene

You, Y.; Ramachandra, S. G.; Jin, T.

10.1101/736512 — genetics — Posted on 2019-08-15

1686 Ancestral reconstruction of sunflower karyotypes reveals dramatic chromosomal evolution

Ostevik, K. L.; Samuk, K.; Rieseberg, L. H.

10.1101/737155 — evolutionary biology — Posted on 2019-08-15

1687 Phylogenetic weighting does little to improve the accuracy of evolutionary coupling analyses

Hockenberry, A. J.; Wilke, C. O.

10.1101/736173 — evolutionary biology — Posted on 2019-08-15

1688 Effects of forest management on the phenology of early-flowering understory herbs

Willems, F. M.; Scheepens, N. J. F.; Ammer, C.; Block, S.; Bucharova, A.; Schall, P.; Sehrt, M.; Bossdorf, O.

10.1101/733907 — ecology — Posted on 2019-08-15

1689 A simple CPG-based model to generate human hip moment pattern in walking by generating stiffness and equilibrium point trajectories

Bahramian, A.; Towhidkhah, F.; Jafari, S.

10.1101/737031 — bioengineering — Posted on 2019-08-15

1690 Response-related signals increase confidence but not metacognitive performance

Filevich, E.; Koss, C.; Faivre, N.

10.1101/735712 — neuroscience — Posted on 2019-08-15

1691 Prediction of a cell-type specific mouse mesoconnectome using gene expression data

Timonidis, N.; Bakker, R.; Tiesinga, P.

10.1101/736520 — neuroscience — Posted on 2019-08-15

1692 Models of heterogeneous dopamine signaling in an insect learning and memory center

Jiang, L.; Litwin-Kumar, A.

10.1101/737064 — neuroscience — Posted on 2019-08-15

1693 Therapeutically Exploring Persister Metabolism In Bacteria

Orman, M.; Mohiuddin, S. G.; Karki, P.; Saba, A.; Hoang, T.

10.1101/737320 — microbiology — Posted on 2019-08-15

1694 Extended-spectrum beta-lactamase (ESBL)-producing and non-ESBL-producing Escherichia coli isolates causing bacteremia in the Netherlands (2014 - 2016) differ in ST distribution, antimicrobial resistance gene and virulence gene content

van Hout, D.; Verschuuren, T. D.; Bruijning-Verhagen, P. C. J.; Bosch, T.; Schürch, A. C.; Willems, R. J. L.; Bonten, M. J. M.; Kluytmans, J. A. J. W.

10.1101/723734 — microbiology — Posted on 2019-08-15

1695 Mutational analysis reveals how the essential interactions of a ClpP proteolytic system regulate the apicoplast proteome in malaria parasites

Florentin, A.; Stephens, D. R.; Brooks, C. F.; Baptista, R. P.; Muralidharan, V.

10.1101/718452 — microbiology — Posted on 2019-08-15

1696 Berberine delays onset of collagen induced arthritis through T cell suppression.

Vita, A. A.; Lyons, D. O.; Aljobaily, H.; Pullen, N. A.

10.1101/736264 — immunology — Posted on 2019-08-15

1697 Coordinated Postnatal Trajectories of T Cells and Microbiota in Preterm and Full- term Newborns

Grier, A.; Laniewski, N.; Gill, A. L.; Kessler, H. A.; Huyck, H.; Holden-Wiltse, J.; Bandyopadhyay, S.; Carnahan, J.; Dylag, A.; Topham, D. J.; Falsey, A. R.; Caserta, M. T.; Pryhuber, G. S.; Gill, S. R.; McDavid, A.; Scheible, K. M.

10.1101/736090 — immunology — Posted on 2019-08-15

1698 Gene copy number is associated with phytochemistry in Cannabis sativa

Vergara, D.; Huscher, E. L.; Keepers, K. G.; Givens, R. M.; Cizek, C. G.; Torres, A.; Gaudino, R.; Kane, N. C.

10.1101/736181 — genomics — Posted on 2019-08-15

1699 Polygenic Hyperlipidemias and Coronary Artery Disease Risk

Ripatti, P.; Ramo, J. T.; Mars, N. J.; Soderlund, S.; Benner, C.; Surakka, I.; Kiiskinen, T.; Havulinna, A. S.; Palta, P.; Freimer, N. B.; Salomaa, V.; Pirinen, M.; FinnGen, ; Palotie, A.; Taskinen, M.-R.; Ripatti, S.

10.1101/735167 — genomics — Posted on 2019-08-15

1700 Common breast cancer risk loci predispose to distinct tumor subtypes

Ahearn, T. U.; Zhang, H.; Michailidou, K.; Milne, R. L.; Bolla, M. K.; Dennis, J.; Dunning, A. M.; Lush, M.; Wang, Q.; Andrulis, I. L.; Anton-Culver, H.; Arndt, V.; Aronson, K. J.; Auer, P. L.; Augustinsson, A.; Baten, A.; Becher, H.; Behrens, S.; Benitez, J.; Bermisheva, M.; Blomqvist, C.; Bojesen, S. E.; Bonanni, B.; Borresen-Dale, A.-L.; Brauch, H.; Brenner, H.; Brooks-Wilson, A.; Bruning, T.; Burwinkel, B.; Canzian, F.; Castelao, J. E.; Chang-Claude, J.; Chanock, S.; Chenevix-Trench, G.; Clarke, C. L.; NBCS Collaborators, ; Collee, J. M.; Cox, A.; Cross, S. S.; Czene, K.; Daly, M. B.; Dev

10.1101/733402 — genetics — Posted on 2019-08-15

1701 IRBIT Directs Differentiation of Intestinal Stem Cell Progeny to Maintain Tissue Homeostasis

Arnaoutov, A.; Lee, H.; Plevock Haase, K.; Aksenova, V.; Oliver, B.; Jarnik, M.; Serpe, M.; Dasso, M.

10.1101/737262 — developmental biology — Posted on 2019-08-15

1702 Gli3 regulates vomeronasal neurogenesis, olfactory ensheathing cell formation, and GnRH-1 neuronal migration.

Taroc, E. Z. M.; Naik, A.; Lin, J. M.; Peterson, N. B.; Keefe, D. L.; Genis, E.; Fuchs, G.; Balasubramanian, R.; Forni, P. E.

10.1101/643155 — developmental biology — Posted on 2019-08-15

1703 Pro-inflammatory cytokines disrupt β-cell circadian clocks in diabetes

Javeed, N.; Brown, M. R.; Rakshit, K.; Her, T.; Ye, Z.; Lee, J. H.; Ordog, T.; Matveyenko, A. V.

10.1101/705210 — cell biology — Posted on 2019-08-15

1704 Simulations of proposed mechanisms of FtsZ-driven cell constriction

Nguyen, L. T.; Oikonomou, C. M.; Jensen, G. J.

10.1101/737189 — biophysics — Posted on 2019-08-15

1705 Bound-state diffusion due to binding to flexible polymers in a selective biofilter

Hough, L. E.; Betterton, M. D.; Maguire, L.

10.1101/736942 — biophysics — Posted on 2019-08-15

1706 Classifying T cell activity in autofluorescence intensity images with convolutional neural networks

Wang, Z. J.; Walsh, A. J.; Skala, M. C.; Gitter, A.

10.1101/737346 — bioinformatics — Posted on 2019-08-15

1707 Capturing medical practice with indication embeddings

Melamed, R. D.

10.1101/737049 — bioinformatics — Posted on 2019-08-15

1708 Chromosome-length haplotigs for yak and cattle from trio binning assembly of an F1 hybrid

Rice, E. S.; Koren, S.; Rhie, A.; Heaton, M. P.; Kalbfleisch, T. S.; Hardy, T.; Hackett, P. H.; Bickhart, D. M.; Rosen, B. D.; Vander Ley, B.; Maurer, N. W.; Green, R. E.; Phillippy, A. M.; Petersen, J. L.; Smith, T. P. L.

10.1101/737171 — bioinformatics — Posted on 2019-08-15

1709 Cooperation only for high rewards - a solvable task-based study on free-ranging dogs

Bhattacharjee, D.; Sarkar, R.; Sau, S.; Babu, D.; Albal, A.; Mehta, D.; Bhadra, A.

10.1101/736009 — animal behavior and cognition — Posted on 2019-08-15

1710 Reporter system architecture affects measurements of noncanonical amino acid incorporation efficiency and fidelity

Potts, K. A.; Stieglitz, J. T.; Lei, M.; Van Deventer, J. A.

10.1101/737197 — synthetic biology — Posted on 2019-08-15

1711 Analyzing combined eye-tracking/EEG experiments with (non)linear deconvolution models

Dimigen, O.; Ehinger, B. V.

10.1101/735530 — neuroscience — Posted on 2019-08-15

1712 M-GWAS for the gut microbiome in Chinese adults illuminates on complex diseases

Liu, X.; Tang, S.; Zhong, H.; Tong, X.; Jie, Z.; Ding, Q.; Wang, D.; Guo, R.; Xiao, L.; Xu, X.; Yang, H.; Wang, J.; Zong, Y.; LIU, X.; Zhang, Y.; Brix, S.; Kristiansen, K.; Hou, Y.; Jia, H.; Zhang, T.

10.1101/736413 — genetics — Posted on 2019-08-15

1713 Unique transcriptional signatures of sleep loss across independently evolved cavefish populations

McGaugh, S. E.; Passow, C. N.; Jaggard, J. B.; Stahl, B. A.; Keene, A. C.

10.1101/734673 — evolutionary biology — Posted on 2019-08-15

1714 Contextualising UK moorland burning studies: geographical versus potential sponsorship-bias effects on research conclusions

Brown, L. E.; Holden, J.

10.1101/731117 — ecology — Posted on 2019-08-15

1715 Population genomics of a bioluminescent symbiosis sheds light on symbiont transmission and specificity

Gould, A. L.; Dunlap, P. V.

10.1101/736074 — ecology — Posted on 2019-08-15

1716 DNA unwinding mechanism of a eukaryotic replicative CMG helicase

Yuan, Z.; Georgescu, R.; Bai, L.; Zhang, D.; Li, H.; O'Donnell, M.

10.1101/737015 — biochemistry — Posted on 2019-08-15

1717 Leptin resistance establishment in the ovary of diet-induced obese mice and its relationship with cumulus cells transcriptome

Wolodko, K.; Walewska, E.; Castillo-Fernandez, J.; Kelsey, G. D.; Galvao, A.

10.1101/729657 — physiology — Posted on 2019-08-15

1718 Monosynaptic tracing success depends critically on helper virus concentrations

Lavin, T. K.; Jin, L.; Lea, N. E.; Wickersham, I.

10.1101/736017 — neuroscience — Posted on 2019-08-15

1719 Multipotent radial glia progenitors and fate-restricted intermediate progenitors sequentially generate diverse cortical interneuron types

Kelly, S. M.; Raudales, R.; Moissidis, M.; Kim, G.; Huang, Z. J.

10.1101/735019 — neuroscience — Posted on 2019-08-15

1720 Delta phase resets mediate non-rhythmic temporal prediction

Daume, J.; Wang, P.; Maye, A.; Zhang, D.; Engel, A. K.

10.1101/643957 — neuroscience — Posted on 2019-08-15

1721 Compound stimuli reveal the structure of visual motion selectivity in macaque MT neurons

Zaharia, A. D.; Goris, R. L. T.; Movshon, J. A.; Simoncelli, E.

10.1101/692533 — neuroscience — Posted on 2019-08-15

1722 Translational Regulation Promotes Oxidative Stress Resistance in the Human Fungal Pathogen Cryptococcus neoformans

Leipheimer, J.; Bloom, A. L. M.; Campomizzi, C. S.; Salei, Y.; Panepinto, J. C.

10.1101/735225 — microbiology — Posted on 2019-08-15

1723 MKPV (aka MuCPV) and related chapparvoviruses are nephro-tropic and encode novel accessory proteins p15 and NS2

Jolly, C. J.; Lee, Q.; Padula, M. P.; Pinello, N.; Williams, S. H.; O'Rourke, M. B.; Fumagalli, M. J.; Orkin, J. D.; Shaban, B.; Brenner, O.; Weninger, W.; Souza, W. M. d.; Melin, A. D.; Wong, J. J.- L.; Crim, M. J.; Monette, S.; Roediger, B.

10.1101/732537 — microbiology — Posted on 2019-08-15

1724 Regulatory kinase genetic interaction profiles differ between environmental conditions and cellular states

Sun, S.; Baryshnikova, A.; Brandt, N.; Gresham, D. J.

10.1101/735720 — genetics — Posted on 2019-08-15

1725 Increasing growth rate slows adaptation when genotypes compete for diffusing resources

Chacon, J. M.; Harcombe, W. R.

10.1101/616938 — evolutionary biology — Posted on 2019-08-15

1726 Quantifying free behavior in an open field using k-motif approach

Könings, M.; Blokpoel, M.; Kapusta, K.; Claassen, T.; Buitelaar, J. K.; Glennon, J. C.; Bielczyk, N. Z.

10.1101/735399 — animal behavior and cognition — Posted on 2019-08-15

1727 Scalable dynamic characterization of synthetic gene circuits

Dalchau, N.; Grant, P. K.; Vaidyanathan, P.; Spaccasassi, C.; Gravill, C.; Phillips, A.

10.1101/635672 — synthetic biology — Posted on 2019-08-15

1728 Agency and responsibility over virtual movements controlled through different paradigms of brain-computer interface

Nierula, B.; Spanlang, B.; Martini, M.; Borrell, M.; Nikulin, V. V.; Sanchez-Vives, M. V.

10.1101/735548 — neuroscience — Posted on 2019-08-15

1729 Automated data-intensive forecasting of plant phenology throughout the United States

Taylor, S. D.; White, E. P.

10.1101/634568 — ecology — Posted on 2019-08-15

1730 Population-Level Disease Dynamics Reflect Individual Heterogeneities in Transmission

Siva-Jothy, J. A.; White, L.; Craft, M. E.; Vale, P. F.

10.1101/735480 — ecology — Posted on 2019-08-15

1731 Low FoxO expression in Drosophila somatosensory neurons protects dendrite growth under nutrient restriction

Poe, A. R.; Xu, Y.; Zhang, C.; Li, K.; Labib, D.; Han, C.

10.1101/735605 — neuroscience — Posted on 2019-08-15

1732 Resting-state and task-based centrality of dorsolateral prefrontal cortex predict resilience to inhibitory repetitive transcranial magnetic stimulation

Fitzsimmons, S.; Douw, L.; van den Heuvel, O. A.; van der Werf, Y. D.; Vriend, C.

10.1101/735506 — neuroscience — Posted on 2019-08-15

1733 A geometric representation unveils learning dynamics in primate neurons

Cohen, Y.; Schneidman, E.; Paz, R.

10.1101/561670 — neuroscience — Posted on 2019-08-15

1734 RAS Internal Tandem Duplication Disrupts GAP-binding to Activate Oncogenic Signaling

Nelson, A. C.; Turbyville, T.; Dharmaiah, S.; Rigby, M.; Yang, R.; Columbus, J.; Stephens, R.; Sciacca, D.; Onsongo, G.; Sarver, A.; Subramanian, S.; Nissley, D. V.; Simanshu, D.; Lou, E.

10.1101/737098 — molecular biology — Posted on 2019-08-15

1735 Uncovering a hidden diversity: optimized protocols for the extraction of bacteriophages from soil

Goeller, P. C.; Haro-Moreno, J. M.; Rodriguez-Valera, F.; Loessner, M. J.; Gomez-Sanz, E.

10.1101/733980 — microbiology — Posted on 2019-08-15

1736 Pan-active imidazolopiperazine antimalarials target the Plasmodium falciparum intracellular secretory pathway

LaMonte, G. M.; Marapana, D. S.; Gnadig, N.; Ottilie, S.; Luth, M. R.; Worgall, T. S.; Rocamora, F.; Goldgof, G. M.; Mohunlal, R.; Kumar, T. R. S.; Thompson, J. K.; Vigil, E.; Yang, J.; Hutson, D.; Johnson, T.; Huang, J.; Williams, R. M.; Zou, B. Y.; Cheung, A. L.; Kumar, P.; Egan, T. J.; Lee, M. C. S.; Siegel, D.; Cowman, A. F.; Fidock, D. A.; Winzeler, E. A.

10.1101/735894 — microbiology — Posted on 2019-08-15

1737 Mutational signatures in upper tract urothelial carcinoma define etiologically distinct subtypes with prognostic relevance

Li, X.; Lu, H.; Guan, B.; Xu, Z.; Shi, Y.; Li, J.; Kong, W.; Liu, J.; Fang, D.; Liu, L.; Shen, Q.; Gong, Y.; He, S.; He, Q.; Zhou, L.; Ci, W.

10.1101/735324 — genomics — Posted on 2019-08-15

1738 Genome-Wide Polygenic Risk Scores and prediction of Gestational Diabetes in South Asian Women

Lamri, A.; Mao, S.; Desai, D.; Gupta, M.; Pare, G.; Anand, S. S.

10.1101/574616 — genomics — Posted on 2019-08-15

1739 The abundance and diversity of West Nile virus mosquito vectors in two Regional Units of Greece during the onset of the 2018 transmission season

Bisia, M.; Jeffries, C. L.; Lytra, I.; Michaelakis, A.; Walker, T.

10.1101/735522 — ecology — Posted on 2019-08-15

1740 Targeting MEK5 impairs non-homologous end-joining repair and sensitizes prostate cancer to DNA damaging agents

Broustas, C. G.; Duval, A. J.; Chaudhary, K. R.; Friedman, R. A.; Virk, R. K.; Lieberman, H. B.

10.1101/737080 — cancer biology — Posted on 2019-08-15

1741 Wax ester production in nitrogen-rich conditions by metabolically engineered Acinetobacter baylyi ADP1

Luo, J.; Efimova, E.; Losoi, P.; Santala, V.; Santala, S.

10.1101/735274 — bioengineering — Posted on 2019-08-15

1742 Genetic Background Dominates Fibrotic Aortic Remodeling During Angiotensin-Induced Hypertension in Mice

Spronck, B.; Caulk, A. W.; Ramachandra, A. B.; Murtada, S.-I.; Rojas, A.; He, C.-S.; Bersi, M. R.; Tellides, G.; Humphrey, J. D.

10.1101/727800 — bioengineering — Posted on 2019-08-15

1743 Ephrin-B1 blocks adult cardiomyocyte proliferation and heart regeneration

Cauquil, M.; Mias, C.; Guilbeau-Frugier, C.; Karsenty, C.; Seguelas, M.-H.; Genet, G.; Renaud-Gabardos, E.; Prats, A.-C.; Pons, V.; Branchereau, M.; Heymes, C.; Calise, D.; Lairez, O.; Daviaud, D.; Honton, B.; Frongia, C.; Ducommun, B.; Delisle, M.-B.; Arvanitis, D. N.; Pathak, A.; Senard, J.-M.; Gales, C.

10.1101/735571 — physiology — Posted on 2019-08-15

1744 The Secretomes of Painful Versus Nonpainful Human Schwannomatosis Tumor Cells Differentially Influence Sensory Neuron Gene Expression and Sensitivity

Ostrow, K. L.; Donaldson, K. J.; Caterina, M. J.; Belzberg, A.; Hoke, A.

10.1101/734699 — neuroscience — Posted on 2019-08-15

1745 Systematic spatio-temporal mapping reveals divergent cell death pathways in three mouse models of hereditary retinal degeneration

Power, M. J.; Rogerson, L. E.; Schubert, T.; Berens, P.; Euler, T.; Paquet-Durand, F.

10.1101/554733 — neuroscience — Posted on 2019-08-15

1746 Comparison of visceral adipose tissue DNA methylation and gene expression profiles in female adolescents with obesity

Barberio, M. D.; Nadler, E. P.; Sevilla, S.; Lu, R.; Harmon, B.; Hubal, M.

10.1101/728832 — molecular biology — Posted on 2019-08-15

1747 Motor-mediated clustering at microtubule plus ends facilitates protein transfer to a bio-mimetic cortex

Taberner, N.; Dogterom, M.

10.1101/736728 — cell biology — Posted on 2019-08-15

1748 Placebo-induced pain reduction is associated with inverse network coupling at rest

Wagner, I. C.; Ruetgen, M.; Hummer, A.; Windischberger, C.; Lamm, C.

10.1101/735563 — neuroscience — Posted on 2019-08-15

1749 Unisexual reproduction promotes competition for mating partners in the global human fungal pathogen Cryptococcus deneoformans

Fu, C.; Thielhelm, T. P.; Heitman, J.

10.1101/523894 — microbiology — Posted on 2019-08-15

1750 Improved Representation of Sequence Bloom Trees

Harris, R. S.; Medvedev, P.

10.1101/501452 — bioinformatics — Posted on 2019-08-15

1751 Insular cortex projections to nucleus accumbens core mediate social approach to stressed juvenile rats

Rogers-Carter, M. M.; Djerdjaj, A.; Gribbons, K. B.; Varela, J.; Christianson, J. P.

10.1101/544221 — neuroscience — Posted on 2019-08-15

1752 Quantifying dynamic protein acetylation using quantitative stoichiometry

Baeza, J.; Lawton, A. J.; Fan, J.; Smallegan, M. J.; Leinert, I.; Gandhi, T.; Bernhardt, O. M.; Reiter, L.; Denu, J. M.

10.1101/472530 — biochemistry — Posted on 2019-08-15

1753 Colistin kills bacteria by targeting lipopolysaccharide in the cytoplasmic membrane

Sabnis, A.; Klockner, A.; Becce, M.; Evans, L. E.; Furniss, R. C. D.; Mavridou, D. A. I.; Stevens, M. M.; Edwards, A. M.

10.1101/479618 — microbiology — Posted on 2019-08-15

1754 Including variability in air temperature warming scenarios in a lake simulation model highlights uncertainty in predictions of cyanobacteria

Krinos, A. I.; Farrell, K. J.; Daneshmand, V.; Subratie, K. C.; Figueiredo, R. J.; Carey, C. C.

10.1101/734285 — ecology — Posted on 2019-08-15

1755 Genome-Wide Associations with Resistance to Bipolaris Leaf Spot (Bipolaris oryzae (Breda de Haan) Shoemaker) in a Northern Switchgrass Population (Panicum virgatum)

Songsomboon, K.; Crawford, R.; Crawford, J.; Hansen, J.; Cummings, J.; Mattson, N.; Bergstrom, G.; Viands, D.

10.1101/424721 — bioinformatics — Posted on 2019-08-15

1756 BET proteins are required for transcriptional activation of the senescent beta cell secretome in Type 1 Diabetes

Thompson, P. J.; Shah, A.; Apostolopolou, C.-C.; Bhushan, A.

10.1101/736231 — physiology — Posted on 2019-08-15

1757 Factors associated with opioid cessation: a machine learning approach

Cox, J. W.; Sherva, R. M.; Lunetta, K. L.; Saitz, R.; Kon, M.; Kranzler, H. R.; Gelernter, J. E.; Farrer, L. A.

10.1101/734889 — neuroscience — Posted on 2019-08-15

1758 Hemispheric asymmetry of globus pallidus relates to alpha modulation in reward-related attentional tasks

Mazzetti, C.; Staudigl, T.; Marshall, T. R.; Fallon, S. J.; Zumer, J. M.; Jensen, O.

10.1101/303016 — neuroscience — Posted on 2019-08-15

1759 A prostaglandin F2 alpha analog protects from statin-induced myopathic changes in primary human muscle cells

Grunwald, S. A.; Popp, O.; Haafke, S.; Jedraszczak, N.; Grieben, U.; Saar, K.; Patone, G.; Kress, W.; Steinhagen-Thiessen, E.; Dittmar, G.; Spuler, S.

10.1101/271932 — molecular biology — Posted on 2019-08-15

1760 Membrane fluidity controls peptidoglycan synthesis and MreB movement.

Zielinska, A.; Savietto, A.; de Sousa Borges, A.; Roelofsen, J. R.; Hartman, A. M.; de Boer, R.; van der Klei, I. J.; Hirsch, A. K. H.; Bramkamp, M.; Scheffers, D.-J.

10.1101/736819 — microbiology — Posted on 2019-08-15

1761 Mutation accumulation in chromosomal inversions maintains wing pattern polymorphism in a butterfly

Jay, P.; Chouteau, M.; Whibley, A.; Bastide, H.; Llaurens, V.; Parrinello, H.; Joron, M.

10.1101/736504 — evolutionary biology — Posted on 2019-08-15

1762 New method for high-throughput measurements of viscosity in submicrometer-sized membrane systems

Chwastek, G.; Petrov, E. P.; Saenz, J. P.

10.1101/736785 — biophysics — Posted on 2019-08-15

1763 BASAL RESISTANCE AGAINST A PATHOGEN IS MORE BENEFICIAL THAN IMMUNE PRIMING RESPONSES IN FLOUR BEETLES

Prakash, A.; Agashe, D.; Khan, I.

10.1101/734038 — evolutionary biology — Posted on 2019-08-15

1764 Selection on mutators is not frequency-dependent

Raynes, Y.; Weinreich, D. M.

10.1101/735100 — evolutionary biology — Posted on 2019-08-15

1765 Collective interactions augment influenza A virus replication in a host-dependent manner

Phipps, K. L.; Ganti, K.; Carnacinni, S.; Manandhar, M.; Jacobs, N. T.; Pickett, B. E.; Tan, G. S.; Ferreri, L. M.; Perez, D. R.; Lowen, A. C.

10.1101/736108 — microbiology — Posted on 2019-08-15

1766 A RAD9-dependent cell cycle arrest in response to unresolved recombination intermediates in Saccharomyces cerevisiae

Kaur, H.; GN, K.; Lichten, M.

10.1101/736850 — genetics — Posted on 2019-08-15

1767 An integrated population model for estimating the relative effects of natural and anthropogenic factors on a threatened population of Pacific trout

Scheuerell, M. D.; Ruff, C. P.; Anderson, J. H.; Beamer, E. M.

10.1101/734996 — ecology — Posted on 2019-08-15

1768 The chromosomal-level genome assembly and comprehensive transcriptomes of Chinese razor clam (Sinonovacula constricta) with deep-burrowing life style and broad-range salinity adaptation

Dong, Y.; Zeng, Q.; Ren, J.; Yao, H.; Ruan, W.; Lv, L.; He, L.; Xue, Q.; Bao, Z.; Wang, S.; Lin, Z.

10.1101/735142 — genomics — Posted on 2019-08-15

1769 Magnetic manipulation of axonal endosome transport in live neurons

Chowdary, P. C.; McGuire, A.; Lee, Y.; Che, D.; Hanson, L.; Osakada, Y.; Ooi, C.; Xie, C.; Wang, S. X.; Cui, B.

10.1101/733253 — biophysics — Posted on 2019-08-15

1770 Flies exploit predictable perspectives and backgrounds to enhance iridescent signal salience and mating success

White, T. E.; Vogel-Ghibely, N.; Butterworth, N. J.

10.1101/733758 — animal behavior and cognition — Posted on 2019-08-15

1771 PalaeoChip Arctic1.0: An optimised eDNA targeted enrichment approach to reconstructing past environments

Murchie, T. J.; Kuch, M.; Duggan, A.; Ledger, M. L.; Roche, K.; Klunk, J.; Karpinski, E.; Hackenberger, D.; Sadoway, T.; MacPhee, R.; Froese, D.; Poinar, H.

10.1101/730440 — ecology — Posted on 2019-08-15

1772 LUZP1 and the tumour suppressor EPLIN are negative regulators of primary cilia formation

Goncalves, J.; Coyaud, E.; Laurent, E. M.; Raught, B.; Pelletier, L.

10.1101/736389 — cell biology — Posted on 2019-08-15

1773 Genome-wide analysis of transcriptional bursting-induced noise in mammalian cells

Ochiai, H.; Hayashi, T.; Umeda, M.; Yoshimura, M.; Harada, A.; Shimizu, Y.; Nakano, K.; Saitoh, N.; Kimura, H.; Liu, Z.; Yamamoto, T.; Okamura, T.; Ohkawa, Y.; Nikaido, I.

10.1101/736207 — systems biology — Posted on 2019-08-15

1774 Perturbation-based gene regulatory network inference to unravel oncogenic mechanisms

Morgan, D.; Studham, M.; Tjärnberg, A.; Swartling, F. J.; Weishaupt, H.; Nordling, T. E. M.; Sonnhammer, E. L. L.

10.1101/735514 — systems biology — Posted on 2019-08-15

1775 Potentiating antibiotic treatment using fitness-neutral gene expression perturbations

Otoupal, P. B.; Erickson, K. E.; Eller, K. A.; Campos, J. K.; Aunins, T. R.; Chatterjee, A.

10.1101/736058 — synthetic biology — Posted on 2019-08-15

1776 Design of a transcriptional biosensor for the portable, on-demand detection of cyanuric acid

Liu, X.; Silverman, A. D.; Alam, K. K.; Iverson, E.; Lucks, J. B.; Jewett, M. C.; Raman, S.

10.1101/736355 — synthetic biology — Posted on 2019-08-15

1777 Study on thermal insulation of diagonal-braced wood frame wall

Liu, M.; Lu, F.; Yang, X.; Yang ruyuan,

10.1101/734178 — scientific communication and education — Posted on 2019-08-15

1778 A peptide pair coordinates regular ovule initiation patterns with seed number and fruit size

Kawamoto, N.; Pino del Carpio, D.; Hofmann, A.; Mizuta, Y.; Daisuke, K.; Higashiyama, T.; Uchida, N.; Torii, K. U.; Colombo, L.; Groth, G.; Simon, R.

10.1101/736439 — plant biology — Posted on 2019-08-15

1779 Multi-Dimensional Machine Learning Approaches for Fruit Shape Recognition and Phenotyping in Strawberry

Feldmann, M. J.; Hardigan, M. A.; Famula, R. A.; Lopez, C. M.; Tabb, A.; Cole, G. S.; Knapp, S. J.

10.1101/736397 — plant biology — Posted on 2019-08-15

1780 An ethnobotanical study of the genus Elymus

Frawley, E. S.; Ciotir, C.; Micke, B.; Rubin, M. J.; Miller, A.

10.1101/734525 — plant biology — Posted on 2019-08-15

1781 Emodin Attenuates Renal Interstitial Fibrosis via Regulation of TIMP1/MM9 Pathway in Rats

Li, D.; Zhang, Q.; Lou, Y.; He, C.; Gu, R.; Wei, L.

10.1101/736876 — molecular biology — Posted on 2019-08-15

1782 MetaboShiny - interactive processing, analysis and identification of untargeted metabolomics data

Wolthuis, J. C.; Magnusdottir, S.; Pras-Raves, M.; Jans, J. J. M.; Burgering, B. M. T.; van Mil, S.; de Ridder, J.

10.1101/734236 — bioinformatics — Posted on 2019-08-15

1783 Mercator: An R Package for Visualization ofDistance Matrices

Abrams, Z. B.; Coombes, C. E.; Li, S.; Coombes, K. R.

10.1101/733261 — bioinformatics — Posted on 2019-08-15

1784 Probe-Seq enables transcriptional profiling of specific cell types from heterogeneous tissue by RNA-based isolation

Amamoto, R.; Garcia, M. D.; West, E. R.; Choi, J.; Lapan, S. W.; Lane, E. A.; Perrimon, N.; Cepko, C. L.

10.1101/735738 — molecular biology — Posted on 2019-08-15

1785 Untangling the effects of cellular composition on coexpression analysis

Farahbod, M.; Pavlidis, P.

10.1101/735951 — bioinformatics — Posted on 2019-08-15

1786 Post-transcriptional regulation of aortic calcification in KLOTHO deficient mice: impact of miR-145 and miR-378

Tang, Y.; Shah, T. A.; Garsetti, D. E.; Rogers, M. B.

10.1101/736330 — molecular biology — Posted on 2019-08-15

1787 The evaluation of RNA-Seq de novo assembly by PacBio long read sequencing

Yang, Y.; Gribskov, M.

10.1101/735621 — bioinformatics — Posted on 2019-08-15

1788 ResQ, a release factor-dependent ribosome rescue factor in the Gram-positive bacterium Bacillus subtilis

Shimokawa-Chiba, N.; Müller, C.; Fujiwara, K.; Beckert, B.; Ito, K.; Wilson, D. N.; Chiba, S.

10.1101/732420 — molecular biology — Posted on 2019-08-15

1789 Feedback loops involving AMPK, ERK and TFEB in matrix detachment leads to non-genetic heterogeneity

Kumar, S.; Hari, K.; Jolly, M. K.; Rangarajan, A.

10.1101/736546 — cancer biology — Posted on 2019-08-15

1790 An integrative pan-cancer investigation reveals common genetic and transcriptional alterations of AMPK pathway genes as important predictors of clinical outcomes across major cancer types

Chang, W. H.; Lai, A. G.

10.1101/735647 — cancer biology — Posted on 2019-08-15

1791 Structural control of regioselectivity in an unusual bacterial acyl-CoA dehydrogenase

Blake-Hedges, J. M.; Henrique Pereira, J.; Cruz-Morales, P.; Thompson, M. G.; Barajas, J. F.; Chen, J.; Krishna, R. N.; Chan, L. J. G.; Nimlos, D.; Alonso-Martinez, C.; Chen, Y.; Gin, J. W.; Katz, L.; Petzold, C. J.; Adams, P. D.; Keasling, J. D.

10.1101/736256 — biochemistry — Posted on 2019-08-15

1792 SHIFT: speedy histological-to-immunofluorescent translation of whole slide images enabled by deep learning

Burlingame, E. A.; McDonnell, M.; Schau, G. F.; Thibault, G.; Lanciault, C.; Morgan, T.; Johnson, B. E.; Corless, C.; Gray, J. W.; Chang, Y. H.

10.1101/730309 — systems biology — Posted on 2019-08-15

1793 Drought sensitivity of leaflet growth, biomass accumulation, and resource partitioning predicts yield in common bean

Hageman, A. N.; Urban, M. O.; Van Volkenburgh, E.

10.1101/736199 — plant biology — Posted on 2019-08-15

1794 Post-Transcriptional Bone Morphogenetic Protein 2 (BMP2) Gene Regulation in Aorta

Shah, T. A.; Tang, Y.; Yurkow, E. J.; Rogers, M. B.

10.1101/735852 — molecular biology — Posted on 2019-08-15

1795 Hexokinase 2 displacement from mitochondria-associated membranes prompts Ca2+-dependent death of cancer cells

Rasola, A.; Ciscato, F.; Filadi, R.; Masgras, I.; Pizzi, M.; Marin, O.; Damiano, N.; Pizzo, P.; Gori, A.; Frezzato, F.; Trentin, L.; Bernardi, P.

10.1101/736538 — cancer biology — Posted on 2019-08-15

1796 Volumetric Lissajous Confocal Microscopy

Deguchi, T.; Bianchini, P.; Palazzolo, G.; Oneto, M.; Diaspro, A.; Duocastella, M.

10.1101/735654 — biophysics — Posted on 2019-08-15

1797 Evolution of specialization in dynamic fluids

Uppal, G.; Vural, D.

10.1101/735589 — bioinformatics — Posted on 2019-08-15

1798 Simulating metagenomic stable isotope probing datasets with MetaSIPSim

Barnett, S. E.; Buckley, D. H.

10.1101/735787 — bioinformatics — Posted on 2019-08-15

1799 A quantitative method for proteome reallocation using minimal regulatory interventions

Lastiri-Pancardo, G.; Mercado-Hernandez, J. S.; Kim, J.; Jimenez, J. I.; Utrilla, J.

10.1101/733592 — synthetic biology — Posted on 2019-08-15

1800 Live-cell assays for cell stress responses reveal new patterns of cell signaling caused by mutations in rhodopsin, α-synuclein and TDP-43

Harlen, K. M.; Roush, E. C.; Clayton, J. E.; Martinka, S.; Hughes, T. E.

10.1101/735878 — neuroscience — Posted on 2019-08-15

1801 BiofilmQ, a software tool for quantitative image analysis of microbial biofilm communities

Hartmann, R.; Jeckel, H.; Jelli, E.; Singh, P. K.; Vaidya, S.; Bayer, M.; Vidakovic, L.; Diaz-Pascual, F.; Fong, J. C. N.; Dragos, A.; Besharova, O.; Nadell, C. D.; Sourjik, V.; Kovacs, A. T.; Yildiz, F. H.; Drescher, K.

10.1101/735423 — microbiology — Posted on 2019-08-15

1802 Dynamic regulation of immunity through post-translational control of defense transcript splicing

Dressano, K.; Weckwerth, P.; Poretsky, E.; Takahashi, Y.; Villarreal, C.; Shen, Z.; Schroeder, J.; Briggs, S.; Huffaker, A.

10.1101/736249 — plant biology — Posted on 2019-08-15

1803 Detection and quantification of GPCR mRNA: An assessment and implications of data from high-content methods

Sriram, K.; Wiley, S. Z.; Moyung, K.; Gorr, M. W.; Salmeron, C.; Marucut, J.; French, R. P.; Lowy, A. M.; Insel, P. A.

10.1101/734863 — molecular biology — Posted on 2019-08-15

1804 EPIFANY - A method for efficient high-confidence protein inference

Pfeuffer, J.; Sachsenberg, T.; Dijkstra, T. M. H.; Serang, O.; Reinert, K.; Kohlbacher, O.

10.1101/734327 — bioinformatics — Posted on 2019-08-15

1805 Evolution of p38 MAP Kinases in Drosophila

Ryan, S. M.; Wildman, K.; Oceguera-Perez, B.; Barbee, S.; Mortimer, N. T.; Vrailas-Mortimer, A.

10.1101/735126 — evolutionary biology — Posted on 2019-08-15

1806 mTORC1 and mTORC2 regulate distinct aspects of glutamatergic synaptic transmission.

McCabe, M. P.; Cullen, E. R.; Barrows, C. M.; Shore, A. N.; Tooke, K. I.; Weston, M.

10.1101/731554 — neuroscience — Posted on 2019-08-15

1807 Modulation of sensory behavior and food choice by an enteric bacteria-produced neurotransmitter

O'Donnell, M. P.; Fox, B. W.; Chao, P.-H.; Schroeder, F. C.; Sengupta, P.

10.1101/735845 — neuroscience — Posted on 2019-08-15

1808 A non-canonical role for p27Kip1 in restricting proliferation of corneal endothelial cells during development

Defoe, D. M.; Rao, H.; Harris, D. J.; Moore, P. D.; Brocher, J.; Harrison, T. A.

10.1101/721621 — developmental biology — Posted on 2019-08-15

1809 NEURONS THAT FUNCTION WITHIN AN INTEGRATOR TO PROMOTE A PERSISTENT BEHAVIORAL STATE IN DROSOPHILA

Jung, Y.; Kennedy, A.; Chiu, H.; Mohammad, F.; Claridge-Chang, A.; Anderson, D. J.

10.1101/735985 — neuroscience — Posted on 2019-08-15

1810 Progression from feature-specific brain activity to hippocampal spatial binding during episodic encoding

Cooper, R.; Ritchey, M.

10.1101/735761 — neuroscience — Posted on 2019-08-15

1811 STABILITY ANALYSIS OF A BULK-SURFACE REACTION MODEL FOR MEMBRANE-PROTEIN CLUSTERING

Stolerman, L. M.; Getz, M.; Llewellyn Smith, S. G.; Holst, M.; Rangamani, P.

10.1101/736165 — cell biology — Posted on 2019-08-15

1812 Intercellular communication controls agonist-induced calcium oscillations independently of gap junctions in smooth muscle cells.

Stasiak, S. E.; Jamieson, R. R.; Bouffard, J.; Cram, E. J.; Parameswaran, H.

10.1101/734269 — biophysics — Posted on 2019-08-15

1813 Selectivity Filter Instability Dominates the Low Intrinsic Activity of the TWIK-1 K2P K+ Channel

Nematian-Ardestani, E.; Abd-Wahab, M. F.; Chatelain, F. C.; Sun, H.; Schewe, M.; Baukrowitz, T.; Tucker, S. J.

10.1101/735704 — biophysics — Posted on 2019-08-15

1814 Profilin and formin constitute a pacemaker system for robust actin filament growth

Funk, J.; Merino, F.; Venkova, L.; Vargas, P.; Raunser, S.; Piel, M.; Bieling, P.

10.1101/736272 — biochemistry — Posted on 2019-08-15

1815 Acoustic biomolecules enhance hemodynamic functional ultrasound imaging of neural activity

Maresca, D.; Payen, T.; Lee-Gosselin, A.; Ling, B.; Malounda, D.; Demene, C.; Tanter, M.; Shapiro, M. G.

10.1101/734939 — neuroscience — Posted on 2019-08-15

1816 Single Cell RNAseq Reveals A Critical Role of Chloride Channels in Airway Development

He, M.; Wu, B.; Le, D. D.; Ye, W.; Sinclair, A. W.; Padovano, V.; Chen, Y.; Li, K.; Sit, R.; Tan, M.; Caplan, M. J.; Neff, N.; Jan, Y. N.; Darmanis, S.; Jan, L. Y.

10.1101/735969 — developmental biology — Posted on 2019-08-15

1817 Ctf4 organizes sister replisomes and Pol α into a replication factory

Yuan, Z.; Georgescu, R.; Almeida Santos, R. d. L.; Zhang, D.; Bai, L.; Yao, N. Y.; Zhao, G.; O'Donnell, M. E.; Li, H.

10.1101/735746 — biochemistry — Posted on 2019-08-15

1818 Ecological networks: Pursuing the shortest path, however narrow and crooked

Costa, A.; Martin Gonzalez, A. M.; Guizien, K.; Doglioli, A. M.; Gomez, J. M.; Petrenko, A.; Allesina, S.

10.1101/475715 — ecology — Posted on 2019-08-15

1819 A Canal-Associated Neuron cAMP signalling pathway that regulates C. elegans larval development

Chien, J.; Wolf, F. W.; Grosche, S.; Yosef, N.; Garriga, G.; Morck, C.

10.1101/733618 — developmental biology — Posted on 2019-08-15

1820 Lysine acetylation promotes PALB2 chromatin association to maintain genome stability

Esashi, F.; Fournier, M.; Bleuyard, J.-Y.; Couturier, A. M.; Ellins, J.; Hester, S.; Smerdon, S. J.; Tora, L.

10.1101/735811 — cell biology — Posted on 2019-08-15

1821 Chemotaxis and topotaxis add vectorially for amoeboid cell migration

Wondergem, J. A. J.; Mytiliniou, M.; de Wit, F. C. H.; Reuvers, T. G. A.; Holcman, D.; Heinrich, D.

10.1101/735779 — biophysics — Posted on 2019-08-14

1822 The effects of terminal tagging on homomeric interactions of the sigma 1 receptor

Yano, H.; Liu, L.; Naing, S.; Shi, L.

10.1101/735803 — biochemistry — Posted on 2019-08-15

1823 Genomic insights into the Archaea inhabiting an Australian radioactive legacy site

Vazquez-Campos, X.; Kinsela, A.; Bligh, M.; Payne, T.; Wilkins, M.; Waite, T. D.

10.1101/728089 — microbiology — Posted on 2019-08-14

1824 CLIC4, a new component of the cytokinetic ring, regulates actin cytoskeleton dynamics during the anaphase-to-telophase transition

Peterman, E.; Valius, M.; Prekeris, R.

10.1101/723940 — cell biology — Posted on 2019-08-14

1825 LTMG (Left truncated mixture Gaussian) based modeling of transcriptional regulatory heterogeneities in single cell RNA-seq data - a perspective from the kinetics of mRNA metabolism

Wan, C.; Chang, W.; Zhang, Y.; Shah, F.; Cao, S.; Chen, X.; Fishel, M.; Ma, Q.; Zhang, C.

10.1101/430009 — bioinformatics — Posted on 2019-08-14

1826 Level of completion along continuum of care for maternal and child health services and factors associated with it among women in Arba Minch Zuria Woreda, Gamo Zone, Southern Ethiopia: a community based cross-sectional study

Haile, D.; Kondale, M.; Andarge, E.; Tunje, A.; Fikadu, T.; Boti, N.

10.1101/735456 — scientific communication and education — Posted on 2019-08-14

1827 Characterizing upper extremity motor behavior in the first week after stroke

Barth, J.; Geed, S.; Mitchell, A.; Lum, P. S.; Edwards, D. F.; Dromerick, A.

10.1101/735431 — neuroscience — Posted on 2019-08-14

1828 Cholinergic-like neurons carrying PSEN1 E280A mutation from familial Alzheimers disease reveal intraneuronal Abeta42 accumulation, hyperphosphorylation of TAU, oxidative stress, apoptosis and Ca2+ flux dysregulation: Therapeutic implications

Soto-Mercado, V.; Mendivil-Perez, M.; Velez-Pardo, C.; Lopera, F.; Jimenez-Del-Rio, M.

10.1101/735449 — neuroscience — Posted on 2019-08-14

1829 Temporal-Spatial Visualization of Endogenous Chromosome Rearrangements in Living Cells

Wang, H.; Nakamura, M.; Zhao, D.; Nguyen, C. M.; Yu, C.; Lo, A.; Daley, T.; La Russa, M.; Liu, Y.; Qi, L. S.

10.1101/734483 — bioengineering — Posted on 2019-08-14

1830 The wheat Seven in Absentia gene is associated with increases in biomass and yield in hot climates

Thomelin, P.; Bonneau, J.; Brien, C.; Suchecki, R.; Baumann, U.; Kalambettu, P.; Langridge, P.; Tricker, P. J.; Fleury, D.

10.1101/726802 — genetics — Posted on 2019-08-14

1831 Unit quaternion description of spatial rotation in 3D electron cryo-microscopy

Hu, M.; Zhang, Q.; Yang, J.; Li, X.

10.1101/733881 — biophysics — Posted on 2019-08-14

1832 Ischemic Stroke Reduces Bone Perfusion and Alters Osteovascular Structure

Hanne, N. J.; Steward, A. J.; Geeroms, C.; Easter, E. D.; Thornburg, H. L.; Kerckhofs, G.; Parac-Vogt, T.; Sheng, H.; Cole, J. H.

10.1101/729632 — bioengineering — Posted on 2019-08-14

1833 A way around the exploration-exploitation dilemma

Peterson, E. J.; Verstynen, T. V.

10.1101/671362 — animal behavior and cognition — Posted on 2019-08-14

1834 Engineered Living Materials based on Adhesin-mediated Trapping of Programmable Cells

Guo, S.; Dubuc, E.; Rave, Y.; Verhagen, M.; Twisk, S.; van der Hek, T.; Oerlemans, G.; van den Oetelaar, M.; van Hazendonk, L.; Bruls, M.; Eijkens, B.; Joostens, P.; Keij, S.; Xing, W.; Nijs, M.; Stalpers, J.; Sharma, M.; Gerth, M.; Boonen, R.; Verduin, K.; Merkx, M.; Voets, I.; de Greef, T.

10.1101/734350 — synthetic biology — Posted on 2019-08-14

1835 Chloroplast Genome Sequencing and Comparative Analysis for Fine Fescue (Festuca L., Poaceae) Turfgrasses

Qiu, Y.; Hirsch, C. D.; Yang, Y.; Watkins, E.

10.1101/708149 — plant biology — Posted on 2019-08-14

1836 Implicit visuomotor adaptation remains limited after several days of training

Wilterson, S. A.; Taylor, J. A.

10.1101/711598 — neuroscience — Posted on 2019-08-14

1837 Neurons expressing pathological Tau protein trigger dramatic noninflammatory changes in microglial morphology and dynamics

Hassan-Abdi, R.; Brenet, A.; Bennis, M.; Yanicostas, C.; Soussi-Yanicostas, N.

10.1101/731901 — neuroscience — Posted on 2019-08-14

1838 Effect of systemic treatment with N--2-oxopiperidine-3- carboxamide (HIOC) or tauroursodeoxycholic Acid (TUDCA) on retinal ganglion cell death following optic nerve crush

Li, Y.; Zhang, X.; Wang, J.; Sellers, J. T.; .Boyd, A. P.; Nickerson, J. M.; Boatright, J. H.

10.1101/733568 — neuroscience — Posted on 2019-08-14

1839 Geomagnetic field intensity may be a cue for the regulation of insect migration

Wan, G.; Liu, R.; Wang, T.; Li, C.; He, J.; Hu, G.; Pan, W.; Chen, F.

10.1101/733782 — animal behavior and cognition — Posted on 2019-08-14

1840 Cornichon Homolog-3 (CNIH3) Modulates Spatial Memory in Female Mice

Frye, H. E.; Williams, S. B.; Trousdale, C. R.; Nelson, E. C.; Dougherty, J. D.; Moron, J. A.

10.1101/724104 — neuroscience — Posted on 2019-08-14

1841 Stress Resistance Screen in a Human Primary Cell Line Identifies Small Molecules that Affect Aging Pathways and Extend C. elegans Lifespan

Zhang, P.; Zhai, Y.; Cregg, J.; Ang, K. K.-H.; Arkin, M.; Kenyon, C.

10.1101/735415 — genetics — Posted on 2019-08-14

1842 Ischemic Stroke Reduces Bone Perfusion and Alters Osteovascular Structure

Hanne, N. J.; Steward, A. J.; Geeroms, C.; Easter, E. D.; Thornburg, H. L.; Kerckhofs, G.; Parac-Vogt, T.; Sheng, H.; Cole, J. H.

10.1101/729632 — bioengineering — Posted on 2019-08-14

1843 Characterization of the mycobiome of the seagrass, Zostera marina, reveals putative associations with marine chytrids

Ettinger, C. L.; Eisen, J. A.

10.1101/735050 — microbiology — Posted on 2019-08-14

1844 Designing gene drives to limit spillover to non-target populations

Greenbaum, G.; Feldman, M. W.; Rosenberg, N. A.; Kim, J.

10.1101/680744 — evolutionary biology — Posted on 2019-08-14

1845 A subset of broadly responsive Type III taste cells contribute to the detection of bitter, sweet and umami stimuli

Dutta Banik, D.; Benfey, E. D.; Martin, L. E.; Kay, K. E.; Loney, G. C.; Nelson, A. R.; Ahart, Z. C.; Kemp, B. T.; Kemp, B. R.; Torregrossa, A.-M.; Medler, K. F.

10.1101/660589 — neuroscience — Posted on 2019-08-14

1846 Plant respiration: controlled by photosynthesis or biomass?

Collalti, A.; Tjoelker, M.; Hoch, G.; Makela, A.; Guidolotti, G.; Heskel, M.; Petit, G.; Ryan, M.; Matteucci, G.; Battipaglia, G.; Prentice, I. C.

10.1101/705400 — ecology — Posted on 2019-08-14

1847 Two different epigenetic pathways detected in wild three-spined sticklebacks are involved in salinity adaptation

Heckwolf, M. J.; Meyer, B. S.; Haesler, R.; Hoeppner, M. P.; Eizaguirre, C.; Reusch, T. B.

10.1101/649574 — evolutionary biology — Posted on 2019-08-14

1848 Spatiotemporal patterns of urbanization in three Swiss urban agglomerations: insights from landscape metrics, growth modes and fractal analysis

Bosch, M.; Chenal, J.

10.1101/645549 — ecology — Posted on 2019-08-14

1849 Tmod2 is a regulator of cocaine responses through control of striatal and cortical excitability, and drug-induced plasticity

Mitra, A.; Deats, S. P.; Dickson, P.; Zhu, J.; Gardin, J.; Neiman, B.; Henkelman, M.; Tsai, N.-P.; Chesler, E.; Zhang, Z.-w.; Kumar, V.

10.1101/648295 — neuroscience — Posted on 2019-08-14

1850 Phylo-comparative analyses reveal the dual role of drift and selection in reproductive character displacement.

Saglam, I. K.; Miller, M.; O'Rourke, S.; Caglar, S. S.

10.1101/610857 — evolutionary biology — Posted on 2019-08-14

1851 Human cardiac fibrosis-on-a-chip model recapitulates disease hallmarks and can serve as a platform for drug screening

Mastikhina, O. N.; Moon, B.-U.; Williams, K.; Hatkar, R.; Gostafson, D.; Sun, X.; Koo, M.; Lam, A.; Sun, Y.; Fish, J. E.; Young, E. W.; Nunes, S. S.

10.1101/632406 — bioengineering — Posted on 2019-08-14

1852 Genomic epidemiology supports multiple introductions and cryptic transmission of Zika virus in Colombia

Black, A.; Moncla, L. H.; Laiton-Donato, K.; Potter, B.; Pardo, L.; Rico, A.; Tovar, C.; Rojas, D. P.; Longini, I. M.; Halloran, M. E.; Pelaez-Carvajal, D.; Ramirez, J. D.; Mercado-Reyes, M.; Bedford, T.

10.1101/454777 — genomics — Posted on 2019-08-14

1853 A genome-wide analysis of DNA methylation identifies a novel association signal for Lp(a) concentrations in the LPA promoter

Coassin, S.; Hermann-Kleiter, N.; Haun, M.; Wahl, S.; Wilson, R.; Paulweber, B.; Kunze, S.; Meitinger, T.; Strauch, K.; Peters, A.; Waldenberger, M.; Kronenberg, F.; Lamina, C.

10.1101/627273 — genetics — Posted on 2019-08-14

1854 Imperfect strategy transmission can reverse the role of population viscosity on the evolution of altruism

Debarre, F.

10.1101/609818 — evolutionary biology — Posted on 2019-08-14

1855 Selection shapes synonymous stop codon use in mammals

Seoighe, C.; Kiniry, S. J.; Peters, A.; Baranov, P. V.; Yang, H.

10.1101/618157 — evolutionary biology — Posted on 2019-08-14

1856 Using the past to estimate sensory uncertainty

Beierholm, U.; Rohe, T.; Ferrari, A.; Stegle, O.; Noppeney, U.

10.1101/589275 — neuroscience — Posted on 2019-08-14

1857 Enhancing DNA metabarcoding performance and applicability with bait capture enrichment and DNA from conservative ethanol

Gauthier, M.; Konecny, L.; Nguyen, A.; Elbrecht, V.; Datry, T.; Douady, C.; Lefebure, T.

10.1101/580464 — molecular biology — Posted on 2019-08-14

1858 Inferring neural signalling directionality from undirected structural connectomes

Seguin, C.; Razi, A.; Zalesky, A.

10.1101/573071 — neuroscience — Posted on 2019-08-14

1859 Mathematical modeling links benefits of short and long antibiotic treatment to details of infection

Pauperio, F. F. S.; Ganusov, V. V.; Gjini, E.

10.1101/555334 — systems biology — Posted on 2019-08-14

1860 A SMAD1/5-YAP signaling module drives radial glial cell expansion and growth of the developing cerebral cortex

Najas, S.; Pijuan, I.; Esteve-Codina, A.; Usieto, S.; Martinez, J. D.; Zwijsen, A.; Arbones, M. L.; Marti, E.; Le Dreau, G.

10.1101/558486 — developmental biology — Posted on 2019-08-14

1861 A Tale of Two Positivities and the N400: Distinct neural signatures are evoked by confirmed and violated predictions at different levels of representation

Kuperberg, G.; Brothers, T.; Wlotko, E.

10.1101/404780 — neuroscience — Posted on 2019-08-14

1862 Confidence as a priority signal

Aguilar-Lleyda, D.; Lemarchand, M.; de Gardelle, V.

10.1101/480350 — neuroscience — Posted on 2019-08-14

1863 Direct RNA nanopore sequencing of full-length coronavirus genomes provides novel insights into structural variants and enables modification analysis

Viehweger, A.; Krautwurst, S.; Lamkiewicz, K.; Madhugiri, R.; Ziebuhr, J.; Hölzer, M.; Marz, M.

10.1101/483693 — genomics — Posted on 2019-08-14

1864 Physiological variation reflects bioclimatic differences in the Drosophila americana species complex.

Davis, J.; Moyle, L.

10.1101/453571 — evolutionary biology — Posted on 2019-08-14

1865 An agent-based framework for improving wildlife disease surveillance: A case study of chronic wasting disease in Missouri white-tailed deer.

Belsare, A. V.; Gompper, M. E.; Keller, B.; Sumners, J.; Hansen, L.; Millspaugh, J.

10.1101/478610 — ecology — Posted on 2019-08-14

1866 Remapping in cerebral and cerebellar cortices is not restricted by somatotopy

Hahamy, A.; Makin, T.

10.1101/439356 — neuroscience — Posted on 2019-08-14

1867 Modeling functional enrichment improves polygenic prediction accuracy in UK Biobank and 23andMe data sets

Marquez-Luna, C.; Gazal, S.; Loh, P.-R.; Kim, S. S.; Furlotte, N.; Auton, A.; 23andMe Research Team, ; Price, A. L.

10.1101/375337 — genetics — Posted on 2019-08-14

1868 Genetically encoded cell-death indicators (GEDI) to detect an early irreversible commitment to neurodegeneration

Linsley, J. W.; Shah, K.; Castello, N.; Chan, M.; Haddad, D.; Mancini, J.; Oza, V.; Kokel, D.; Finkbeiner, S.

10.1101/726588 — neuroscience — Posted on 2019-08-14

1869 Geomagnetic field intensity may be a cue for the regulation of insect migration

Wan, G.; Liu, R.; Wang, T.; Li, C.; He, J.; Hu, G.; Pan, W.; Chen, F.

10.1101/733782 — animal behavior and cognition — Posted on 2019-08-14

1870 Stress Resistance Screen in a Human Primary Cell Line Identifies Small Molecules that Affect Aging Pathways and Extend C. elegans Lifespan

Zhang, P.; Zhai, Y.; Cregg, J.; Ang, K.-H.; Arkin, M.; Kenyon, C.

10.1101/735415 — genetics — Posted on 2019-08-14

1871 Are tropical reptiles really declining? A six-year survey of snakes in Drake Bay, Costa Rica, and the role of temperature, rain and light

Barquero-Gonzalez, J. P.; Stice, T. L.; Gomez, G.; Monge-Najera, J.

10.1101/731174 — ecology — Posted on 2019-08-14

1872 Identifying and removing haplotypic duplication in primary genome assemblies

Guan, D.; McCarthy, S.; Wood, J.; Howe, K.; Wang, Y.; Durbin, R.

10.1101/729962 — bioinformatics — Posted on 2019-08-14

1873 Unexpected sound omissions are signaled in human posterior superior temporal gyrus: an intracranial study

Fonken, Y. M.; Mukerji, A.; Jimenez, R.; Lin, J.; Brunner, P.; Schalk, G.; Knight, R. T.

10.1101/733212 — neuroscience — Posted on 2019-08-14

1874 Molecular Mechanism of Action of Mitochondrial Therapeutic SS-31 (Elamipretide): Membrane Interactions and Effects on Surface Electrostatics

Mitchell, W.; Ng, E. A.; Tamucci, J. D.; Boyd, K.; Sathappa, M.; Coscia, A.; Pan, M.; Han, X.; Eddy, N. A.; May, E. R.; Szeto, H. H.; Alder, N. N.

10.1101/735001 — biophysics — Posted on 2019-08-14

1875 Predicting antigen-specificity of single T-cells based on TCR CDR3 regions

Fischer, D. S.; Wu, Y.; Schubert, B.; Theis, F. J.

10.1101/734053 — bioinformatics — Posted on 2019-08-14

1876 Superior Colliculus to VTA pathway controls orienting behavior during conspecific interaction.

Bellone, C.; Prevost-Solie, C.; Contestaile, A.; Musardo, S.; Huber, C.; Bariselli, S.; Carleton, A.

10.1101/735340 — neuroscience — Posted on 2019-08-14

1877 Properties of decision-making tasks govern the tradeoff between model-based and model-free learning

Abzug, Z. M.; Sommer, M. A.; Beck, J. M.

10.1101/730663 — neuroscience — Posted on 2019-08-14

1878 Directed robust generation of functional retinal ganglion cells from Muller glia

Xiao, D.; Qiu, S.; Huang, X.; Zhang, R.; Lei, Q.; Huang, W.; Chen, H.; Gou, B.; Tie, X.; Liu, S.; Liu, Y.; Jin, K.; Xiang, M.

10.1101/735357 — neuroscience — Posted on 2019-08-14

1879 Partial loss of CFIm25 causes aberrant alternative polyadenylation and learning deficits

Alcott, C. E.; Yalamanchili, H.; Ji, P.; van der Heijden, M. E.; Saltzman, A.; Leng, M.; Bhatt, B.; Hao, S.; Wang, Q.; Saliba, A.; Tang, J.; Malovannaya, A.; Wagner, E.; Liu, Z.; Zoghbi, H. Y.

10.1101/735597 — genomics — Posted on 2019-08-14

1880 Effects of two seminal fluid proteins on post-mating behavior in the simultaneously hermaphroditic flatworm Macrostomum lignano

Weber, M.; Patlar, B.; Ramm, S. A.

10.1101/734301 — evolutionary biology — Posted on 2019-08-14

1881 Auxin-induced nanoclustering of membrane signaling complexes underlies cell polarity establishment in Arabidopsis

Pan, X.; Fang, L.; Liu, J.; Senay-Aras, B.; Lin, W.; Zheng, S.; Zhang, T.; Manor, U.; Chen, W.; Yang, Z.

10.1101/734665 — cell biology — Posted on 2019-08-14

1882 Kcnn3 as a target for treating aberrant behaviors in stressed, ethanol-dependent mice

Padula, A. E.; Rinker, J. A.; Khan, F.; Lopez, M. F.; Mulligan, M. K.; Williams, R. W.; Becker, H. C.; Mulholland, P. J.

10.1101/734970 — neuroscience — Posted on 2019-08-14

1883 Chytrid rhizoid morphogenesis is adaptive and resembles hyphal development in ‘higher’ fungi

Laundon, D.; Chrismas, N.; Wheeler, G.; Cunliffe, M.

10.1101/735381 — developmental biology — Posted on 2019-08-14

1884 Spatial intra- and intercellular alignment of respiratory cilia and its relation to function

Schneiter, M.; Halm, S.; Odriozola, A.; Mogel, H.; Ricka, J.; Stoffel, M. H.; Zuber, B.; Frenz, M.; Tschanz, S. A.

10.1101/735332 — cell biology — Posted on 2019-08-14

1885 Single Cell Analysis Reveals Multiple Requirements for Zinc in the Mammalian Cell Cycle

Lo, M. N.; Damon, L. J.; Tay, J. W.; Palmer, A. E.

10.1101/735134 — cell biology — Posted on 2019-08-14

1886 High-throughput multicolor 3D localization in live cells by depth-encoding imaging flow cytometry

Weiss, L. E.; Shalev Ezra, Y.; Goldberg, S. E.; Ferdman, B.; Shechtman, Y.

10.1101/730101 — biophysics — Posted on 2019-08-14

1887 Physical limit to concentration sensing in a changing environment

Mora, T.; Nemenman, I.

10.1101/733840 — biophysics — Posted on 2019-08-14

1888 Unit quaternion description of spatial rotation in 3D electron cryo-microscopy

Hu, M.; Zhang, Q.; Yang, J.; Li, X.

10.1101/733881 — biophysics — Posted on 2019-08-14

1889 The effect of liver enzymes on body composition: a Mendelian randomization study

LIU, J.; Au Yeung, S. L.; Kwok, M. K.; Leung, J. Y. Y.; Hui, L. L.; Leung, G. M.; Schooling, C. M.

10.1101/732685 — genetics — Posted on 2019-08-14

1890 Lecithin:Retinol Acyl Transferase (LRAT) inducesthe formation of lipid droplets

Molenaar, M. R.; Wassenaar, T. A.; Yadav, K. K.; Toulmay, A.; Mari, M. C.; Caillon, L.; Chorlay, A.; Haaker, M. W.; Wubbolts, R. W.; Houweling, M.; Vaandrager, A. B.; Reggiori, F.; Thiam, A. R.; Prinz, W. A.; Helms, J. B.

10.1101/733931 — biochemistry — Posted on 2019-08-14

1891 How do three cytosolic glutamine synthetase isozymes of wheat perform N assimilation and translocation?

Wei, Y.; Wang, X.; Zhang, Z.; Xiong, S.; Zhang, Y.; Wang, L.; Meng, X.; Zhang, J.; Ma, X.

10.1101/733857 — plant biology — Posted on 2019-08-14

1892 Culture of salivary methanogens assisted by chemically produced hydrogen

Guindo, C. O.; Terrer, E.; Chabriere, E.; Aboudharam, G.; Drancourt, M.; Grine, G.

10.1101/734210 — microbiology — Posted on 2019-08-14

1893 The Alkaliphilic side of Staphylococcus aureus

Vaish, M.; Jereen, A.; Ali, A.; Krulwich, T. A.

10.1101/735191 — microbiology — Posted on 2019-08-14

1894 Inferring putative ancient whole genome duplications in the 1000 Plants (1KP) initiative: access to gene family phylogenies and age distributions

Li, Z.; Barker, M. S.

10.1101/735076 — evolutionary biology — Posted on 2019-08-14

1895 Formation of talin-vinculin pre-complexes dictates maturation of nascent adhesions by accelerated force transmission and vinculin recruitment

Han, S. J.; Dean, K.; Whitewood, A. J.; Bachir, A.; Guttierrez, E.; Groisman, A.; Horwitz, A. R.; Goult, B. T.; Danuser, G.

10.1101/735183 — cell biology — Posted on 2019-08-14

1896 Density-dependent costs and benefits of male mating success in a wild insect

Niemela, P. T.; Tiso, S.; Dingemanse, N. J.

10.1101/733832 — evolutionary biology — Posted on 2019-08-14

1897 Synteny-based analyses indicate that sequence divergence is not the dominant source of orphan genes

Vakirlis, N.; Carvunis, A.-R.; McLysaght, A.

10.1101/735175 — evolutionary biology — Posted on 2019-08-14

1898 Station and train surface microbiomes of Mexico City’s metro (subway/underground)

Hernandez, A. M.; Vargas-Robles, D.; Alcaraz, L. D.; Peimbert, M.

10.1101/735027 — microbiology — Posted on 2019-08-14

1899 Dissecting genetic and sex-specific host heterogeneity in pathogen transmission potential

Siva-Jothy, J. A.; Vale, P. F.

10.1101/733915 — ecology — Posted on 2019-08-14

1900 Casein kinase 1 dynamics underlie the PER2 circadian phosphoswitch

Philpott, J. M.; Narasimamurthy, R.; Ricci, C. G.; Freeberg, A. M.; Hunt, S. R.; Yee, L. E.; Pelofsky, R. S.; Tripathi, S.; Virshup, D. M.; Partch, C. L.

10.1101/734624 — biochemistry — Posted on 2019-08-14

1901 Combined efficacy of a novel antimicrobial cationic peptide polymer with conventional antibiotics to combat multi-drug resistant pathogens

Thappeta, K. R.; Vikhe, Y. S.; Yong, A. M. H.; Chan-Park, M.; Kline, K. A.

10.1101/735217 — microbiology — Posted on 2019-08-14

1902 Identification of Escherichia coli ClpAP in regulating susceptibility to type VI secretion system-mediated attack by Agrobacterium tumefaciens

Lin, H.-H.; Yu, M.; Sriramoju, M. K.; Hsu, S.-T. D.; Liu, C.-T.; Lai, E.-M.

10.1101/734046 — microbiology — Posted on 2019-08-14

1903 Single nucleus RNA sequencing maps acinar cell states in a human pancreas cell atlas

Tosti, L.; Hang, Y.; Trefzer, T.; Steiger, K.; Ten, F. W.; Lukassen, S.; Ballke, S.; Kuehl, A. A.; Spieckermann, S.; Bottino, R.; Weichert, W.; Kim, S. K.; Eils, R.; Conrad, C.

10.1101/733964 — genomics — Posted on 2019-08-14

1904 Selection for altruistic defense in structured populations

Jordan, F.; Hutzenthaler, M.; Metzler, D.

10.1101/733899 — evolutionary biology — Posted on 2019-08-14

1905 Parallel genomic architecture underlies repeated sexual signal divergence in Hawaiian Laupala crickets

Blankers, T.; Oh, K. P.; Shaw, K. L.

10.1101/732966 — evolutionary biology — Posted on 2019-08-14

1906 Improved detection of differentially represented DNA barcodes for high-throughput lineage phenomics

Akimov, Y.; Bulanova, D.; Timonen, S.; Wennerberg, K.; Aittokallio, T.

10.1101/735266 — bioinformatics — Posted on 2019-08-14

1907 Cell-surface receptors enable perception of extracellular cytokinins

Antoniadi, I.; Novak, O.; Gelova, Z.; Johnson, A.; Plihal, O.; Vain, T.; Simersky, R.; Mik, V.; Karady, M.; Pernisova, M.; Plackova, L.; Opassathian, K.; Hejatko, J.; Robert, S.; Friml, J.; Dolezal, K.; Ljung, K.; Turnbull, C.

10.1101/726125 — plant biology — Posted on 2019-08-14

1908 Crystal structure of the M5 muscarinic acetylcholine receptor

Vuckovic, Z.; Gentry, P. R.; Berizzi, A. E.; Hirata, K.; Varghese, S.; Thompson, G.; van der Westhuizen, E. T.; Burger, W. A. C.; Rahmani, R.; Valant, C.; Langmead, C. J.; Lindsley, C. W.; Baell, J.; Tobin, A. B.; Sexton, P. M.; Christopoulos, A.; Thal, D. M.

10.1101/730622 — pharmacology and toxicology — Posted on 2019-08-14

1909 Escherichia coli clonobiome: assessing the strains diversity in feces and urine by deep amplicon sequencing

Shevchenko, S. G.; Radey, M.; Kisiela, D. I.; Tchesnokova, V.; Sokurenko, E. V.

10.1101/735233 — microbiology — Posted on 2019-08-14

1910 Characterization of the mycobiome of the seagrass, Zostera marina, reveals putative associations with marine chytrids

Ettinger, C. L.; Eisen, J. A.

10.1101/735050 — microbiology — Posted on 2019-08-14

1911 Genetic Associations in Four Decades of Multi-Environment Trials Reveal Agronomic Trait Evolution in Common Bean

MacQueen, A.; White, J. W.; Lee, R.; Osorno, J. M.; Schmutz, J.; Miklas, P. N.; Myers, J.; McClean, P. E.; Juenger, T.

10.1101/734087 — genomics — Posted on 2019-08-14

1912 Cholesterol recognition motifs in the transmembrane domain of the tyrosine kinase receptor family: the case for TRKB

Cannarozzo, C.; Fred, S. M.; Biojone, C.; Casarotto, P. C.; Castren, E.

10.1101/734012 — neuroscience — Posted on 2019-08-14

1913 Girdin is a component of the lateral polarity protein network restricting cell dissemination

Biehler, C.; Wang, L.-T.; Sevigny, M.; Jette, A.; Gamblin, C. L.; Catterall, R.; Houssin, E.; McCaffrey, L.; Laprise, P.

10.1101/733329 — cell biology — Posted on 2019-08-14

1914 Sequences Dimensionality-Reduction by K-mer Substring Space Sampling Enables Effective Resemblance- and Containment-Analysis for Large-Scale omics-data

Yi, H.; Lin, Y.; Jin, W.

10.1101/729665 — bioinformatics — Posted on 2019-08-14

1915 One-time learning and reverse salience signals with a Salience Affected Neural Network (SANN)

Remmelzwaal, L. A.; Ellis, G. F. R.; Tapson, J.

10.1101/726331 — neuroscience — Posted on 2019-08-14

1916 Diversity of responses of soil saprobic fungi to recurring heat events

Szymczak, A.; Ryo, M.; Rillig, M. C.

10.1101/733923 — ecology — Posted on 2019-08-14

1917 Genomic signature of shifts in selection in a sub-alpine ant and its physiological adaptations

Cicconardi, F.; Krapf, P.; D'Annessa, I.; Gamisch, A.; Wagner, H. C.; Nguyen, A. D.; Economo, E. P.; Mikheyev, A. S.; Guenard, B.; Grabherr, R.; Arthofer, W.; di Marino, D.; Steiner, F.; Schlick-Steiner, B. C.

10.1101/696948 — genomics — Posted on 2019-08-14

1918 Inferring neural signalling directionality from undirected structural connectomes

Seguin, C.; Razi, A.; Zalesky, A.

10.1101/573071 — neuroscience — Posted on 2019-08-14

1919 Auxin-induced nanoclustering of membrane signaling complexes underlies cell polarity establishment in Arabidopsis

Pan, X.; Fang, L.; Liu, J.; Senay-Aras, B.; Lin, W.; Zheng, S.; Zhang, T.; Manor, U.; Chen, W.; Yang, Z.

10.1101/734665 — cell biology — Posted on 2019-08-14

1920 Large-scale hyperparameter search for predicting human brain responses in the Algonauts challenge

Jozwik, K. M.; Lee, M.; Marques, T.; Schrimpf, M.; Bashivan, P.

10.1101/689844 — neuroscience — Posted on 2019-08-14

1921 A lab-on-a-chip model of glaucoma

Nafian, F.; Kamali Doust Azad, B.; Yazdani, S.; Rasaee, M. J.; Daftarian, N.

10.1101/704510 — bioengineering — Posted on 2019-08-14

1922 Sustained organic loading perturbation inhibits nitrite oxidation in bioreactors unveiling variable resistance and resilience of nitrification and nitrifiers

Santillan, E.; Phua, W. X.; Constancias, F.; Wuertz, S.

10.1101/605733 — microbiology — Posted on 2019-08-13

1923 What difference do retractions make? An estimate of the epistemic impact of retractions on recent meta-analyses.

Fanelli, D.; Moher, D.

10.1101/734137 — scientific communication and education — Posted on 2019-08-13

1924 Potential Utility of Routine Programmatic Data in Monitoring National and State-Level HIV Epidemic in Nigeria: Data Triangulation Analysis

Debem, H. C.; Dalhatu, I.; Gwamna, J.; Mukhtar, A.; Aminu, Y.

10.1101/734293 — scientific communication and education — Posted on 2019-08-13

1925 Study on thermal insulation of diagonal-braced wood frame wall

Liu, M.; Lu, F.; Yang, X.; Yang ruyuan,

10.1101/734178 — scientific communication and education — Posted on 2019-08-13

1926 Pollen morphology of Polish species from the genus Rubus L. (Rosaceae) and its systematic importance

Lechowicz, K.; Wronska-Pilarek, D.; Bocianowski, J.; Malinski, T.

10.1101/734202 — plant biology — Posted on 2019-08-13

1927 Analysis of the lineage of Phytophthora infestans isolates using mating type assay, traditional markers, and next generation sequencing technologies

Arafa, R. A.; Kamel, S. M.; Rakha, M. T.; Soliman, N. E. K.; Moussa, O. M.; Shirasawa, K.

10.1101/734186 — microbiology — Posted on 2019-08-13

1928 Computational search for UV radiation resistance strategies in Deinococcus swuensis isolated from Paramo ecosystems.

Diaz-Riano, J. I.; Posada, L.; Acosta Garcia, I. C.; Ruiz-Perez, C.; Garcia-Castillo, C.; Reyes, A.; Zambrano, M. M.

10.1101/734129 — microbiology — Posted on 2019-08-13

1929 A new technique for use in the study of the microbiome: An evaluation of a three-dimensional cell culture technique in maintaining the gastrointestinal microbiome of four Balb/c female mice and implications for future studies

Castaneda, E. U.; Brady, J.; Speshock, J.

10.1101/734145 — microbiology — Posted on 2019-08-13

1930 Gains through selection for grain yield in a winter wheat breeding program

Lozada, D. N.; Carter, A. H.

10.1101/734194 — genetics — Posted on 2019-08-13

1931 Epicuticular wax lipid composition of endemic European Betula species and its application to chemotaxonomy and paleobotany

Weber, J.; Schwark, L.

10.1101/734160 — ecology — Posted on 2019-08-13

1932 Low rate of follow-up colonoscopy after positive results of colorectal cancer screening in a Chinese urban core district

Guo, Y.; Jiang, Q.; Tanimoto, T.; Kami, M.; Peng, P.; He, Y.; Yang, X.; Zhang, X.; Gao, W.; Wang, Y.; Chu, X.; Wang, Y.; Kato, S.; Ding, X.

10.1101/734152 — cancer biology — Posted on 2019-08-13

1933 A report on the detection and management of a finding of PSTVd (Potato Spindle Tuber Viroid) in potato breeding material in Northern Ireland, UK.

O'Hanlon, R.; Watts, P.; Martin, R.; Young, G.; Fleming, C.

10.1101/728915 — plant biology — Posted on 2019-08-13

1934 Visual search mimics configural processing in associative learning

Perez, O. D.; Narasiwodeyar, S.; Soto, F. A.

10.1101/713420 — animal behavior and cognition — Posted on 2019-08-13

1935 Brainstem biophysics contribute to sound-source localisation in reverberant scenes

Brughera, A.; Mikiel-Hunter, J.; Dietz, M.; McAlpine, D.

10.1101/694356 — neuroscience — Posted on 2019-08-13

1936 Nucleus Basalis Stimulation Stabilizes Attractor Networks and Enhances Task Representation in Prefrontal Cortex

Qi, X.-L.; Liu, R.; Vazdarjanova, A. I.; Blake, D. T.; Constantinidis, C.

10.1101/674465 — neuroscience — Posted on 2019-08-13

1937 ReCappable Seq: Comprehensive Determination of Transcription Start Sites derived from all RNA polymerases.

Yan, B.; Tzertzinis, G.; Schildkraut, I.; Ettwiller, L. M.

10.1101/696559 — genomics — Posted on 2019-08-13

1938 Estimation of Global and Local Complexities of Brain Networks: A Random Walks Approach

Sotero, R. C.; Sanchez-Rodriguez, L.; Moradi, N.

10.1101/733725 — neuroscience — Posted on 2019-08-13

1939 Multidimensional Associations between Cognition and Connectome Organization in Temporal Lobe Epilepsy

Rodriguez-Cruces, R.; Bernhardt, B. C.; Concha, L.

10.1101/675884 — neuroscience — Posted on 2019-08-13

1940 In situ activation and heterologous production of a cryptic lantibiotic from a plant-ant derived Saccharopolyspora species

Vikeli, E.; Widdick, D.; Batey, S. F.; Heine, D.; Holmes, N. A.; Bibb, M. J.; Martins, D. J.; Pierce, N. E.; Hutchings, M. I.; Wilkinson, B.

10.1101/733808 — microbiology — Posted on 2019-08-13

1941 Mathematical Details on a Cancer Resistance Model

Greene, J.; Sanchez-Tapia, C.; Sontag, E.

10.1101/475533 — cancer biology — Posted on 2019-08-13

1942 Structure and dynamics of a lipid nanodisc by integrating NMR, SAXS and SANS experiments with molecular dynamics simulations

Bengtsen, T.; Holm, V. L.; Midtgaard, S. R.; Johansen, N. T.; Bottaro, S.; Arleth, L.; Lindorff-Larsen, K.

10.1101/734822 — biophysics — Posted on 2019-08-13

1943 EnTAP: Bringing Faster and Smarter Functional Annotation to Non-Model Eukaryotic Transcriptomes

Hart, A. J.; Ginzburg, S.; Xu, M.; Fisher, C. R.; Rahmatpour, N.; Mitton, J. B.; Paul, R.; Wegrzyn, J. L.

10.1101/307868 — bioinformatics — Posted on 2019-08-13

1944 Over the rainbow: a practical guide for fluorophore selection in plant FRET experiments

Denay, G.; Schultz, P.; Haensch, S.; Weidtkamp-Peters, S.; Simon, R.

10.1101/734616 — plant biology — Posted on 2019-08-13

1945 Shrinkage Classification for Overlapping Time Series: An interpretable method for mapping stimulus-differentiated evoked response

Elliott, P. W.; Boring, M. J.; Li, Y.; Richardson, R. M.; Ghuman, A. S.; G'Sell, M. G.

10.1101/733279 — neuroscience — Posted on 2019-08-13

1946 Tumor-bearing mice display reduced insulin-stimulated glucose uptake and microvascular perfusion and exhibit increased hepatic glucose production

Han, X.; Raun, S.; Carlsson, M.; Sjoberg, K. A.; Henriquez-Olguin, C.; Ali, M.; Lundsgaard, A.; Fritzen, A. M.; Moller, L. L. V.; Li, Z.; Li, J.; Jensen, T. E.; Kiens, B.; Sylow, L.

10.1101/734764 — cancer biology — Posted on 2019-08-13

1947 Measurement of skeletal muscle fiber contractility with high-speed traction microscopy

Rausch, M.; Fabry, B.; Böhringer, D.; Steinmann, M.; Mark, C.; Schubert, D.; Schrüfer, S.

10.1101/733451 — bioengineering — Posted on 2019-08-13

1948 DUX4-induced bidirectional HSATII satellite repeat transcripts form intranuclear double stranded RNA foci in human cell models of FSHD

Shadle, S. C.; Bennett, S. R.; Wong, C.-J.; Karreman, N. A.; Campbell, A. E.; van der Maarel, S. M.; Bass, B. L.; Tapscott, S. J.

10.1101/734541 — molecular biology — Posted on 2019-08-13

1949 Unveiling the crucial role of type IV secretion system and motility of Helicobacter pylori in IL-1β production via NLRP3 inflammasome activation in neutrophils

Jang, A.-R.; Kang, M.-J.; Shin, J.-I.; Kwon, S.-W.; Park, J.-Y.; Ahn, J.-H.; Lee, T.-S.; Kim, D.-Y.; Choi, B.-G.; Seo, M.-W.; Yang, S.-J.; Shin, M.-K.; Park, J.-H.

10.1101/733790 — immunology — Posted on 2019-08-13

1950 IgEvolution: clonal analysis of antibody repertoires

Safonova, Y.; Pevzner, P. A.

10.1101/725424 — immunology — Posted on 2019-08-13

1951 Proof-of-concept for the detection of early osteoarthritis pathology by endomicroscopy

Tschaikowsky, M.; Brander, S.; Balzer, B. N.; Rolauffs, B.; Hugel, T.

10.1101/734368 — biophysics — Posted on 2019-08-13

1952 Electrical microstimulation evokes saccades in posterior parietal cortex of common marmosets

Ghahremani, M.; Johnston, K.; Ma, L.; Hayrynen, L.; Everling, S.

10.1101/693580 — neuroscience — Posted on 2019-08-13

1953 A molecular switch for Cdc48 activity and localization during oxidative stress and aging

Reichmann, D.; Radzinski, M.; Yogev, O.; Yesharim, Y.; Brielle, E. S.; Israeli, R.; Fassler, R.; Melamed-Book, N.; Shai, N.; Arkin, I. T.; Pick, E.; Ravid, T.; Schuldiner, M.

10.1101/733709 — molecular biology — Posted on 2019-08-13

1954 Primary complex motor stereotypies are associated with de novo damaging DNA coding mutations that identify candidate risk genes and biological pathways

Fernandez, T. V.; Williams, Z. P.; Kline, T.; Rajendran, S.; Augustine, F.; Wright, N.; Sullivan, C. A. W.; Olfson, E.; Abdallah, S. B.; Liu, W.; Hoffman, E. J.; Gupta, A. R.; Singer, H. S.

10.1101/730952 — genomics — Posted on 2019-08-13

1955 The NAD+-dependent deacetylase Sir2 enables evolution of new traits by regulating distinct gene sets in two yeast species, Saccharomyces cerevisiae and Kluyveromyces lactis

Humphrey, K. M.; Zhu, L.; Hickman, M. A.; Hasan, S.; Maria, H.; Liu, T.; Rusche, L. N.

10.1101/734608 — evolutionary biology — Posted on 2019-08-13

1956 Engineered Living Materials based on Adhesin-mediated Trapping of Programmable Cells

10.1101/734350 — synthetic biology — Posted on 2019-08-13

1957 Neutrophilic granule protein is a novel murine LPS antagonist

Hong, J.; Qu, P.; Wuest, T. R.; Lin, P. C.

10.1101/733352 — immunology — Posted on 2019-08-13

1958 Local human movement patterns and land use impact exposure to zoonotic malaria in Malaysian Borneo

Fornace, K. M.; Alexander, N.; Abidin, T. R.; Brock, P. M.; Chua, T. H.; Vythilingam, I.; Ferguson, H. M.; Manin, B. O.; Wong, M. L.; Ng, S. H.; Cox, J.; Drakeley, C. J.

10.1101/734590 — ecology — Posted on 2019-08-13

1959 The orphan nuclear receptor estrogen-related receptor beta (ERRβ) in triple-negative breast cancer

Fernandez, A. I.; Geng, X.; Chaldekas, K.; Harris, B.; Duttargi, A.; Berry, V. L.; Berry, D. L.; Mahajan, A.; Cavalli, L. R.; Gyorffy, B.; Tan, M.; Riggins, R. B.

10.1101/734632 — cancer biology — Posted on 2019-08-13

1960 Temporal-Spatial Visualization of Endogenous Chromosome Rearrangements in Living Cells

Wang, H.; Nakamura, M.; Zhao, D.; Nguyen, C. M.; Yu, C.; Lo, A.; Daley, T.; La Russa, M.; Liu, Y.; Qi, L. S.

10.1101/734483 — bioengineering — Posted on 2019-08-13

1961 Superfast periodicities in distress vocalizations emitted by bats

Hechavarria, J. C.; Beetz, M. J.; Garcia-Rosales, F.; Koessl, M.

10.1101/734640 — animal behavior and cognition — Posted on 2019-08-13

1962 Chromosome 17: neXt-MP50 C-HPP Challenge Completed

Zhang, H.; Siddiqui, O.; Guan, Y.; Omenn, G. S.

10.1101/734657 — systems biology — Posted on 2019-08-13

1963 Adaptation and evolutionary rescue in a community context

Limberger, R.; Fussmann, G. F.

10.1101/734509 — ecology — Posted on 2019-08-13

1964 Marketplace Shrimp Mislabeling in North Carolina

Korzik, M.; Austin, H.; Cooper, B.; Jasperse, C.; Tan, G.; Richards, E.; Spencer, E.; Steinwand, B.; Fodire, F. J.; Bruno, J.

10.1101/734376 — ecology — Posted on 2019-08-13

1965 Benchmarking machine learning models for the analysis of genetic data using FRESA.CAD Binary Classification Benchmarking

De Velasco Oriol, J.; Martinez-Torteya, A.; Trevino, V.; Alanis, I.; Vallejo, E. E.; Tamez-Pena, J. G.

10.1101/733675 — bioinformatics — Posted on 2019-08-13

1966 The Gene Expression Deconvolution Interactive Tool (GEDIT): Accurate Cell Type Quantification from Gene Expression Data

Nadel, B. B.; Lopez, D.; Montoya, D. J.; Waddel, H.; Khan, M. M.; Pellegrini, M.

10.1101/728493 — bioinformatics — Posted on 2019-08-13

1967 FINET: Fast Inferring NETwork

WANG, A.; HAI, R.

10.1101/733683 — bioinformatics — Posted on 2019-08-13

1968 Separating the signal from the noise in metagenomic cell-free DNA sequencing

Burnham, P.; Gomez-Lopez, N.; Heyang, M.; Cheng, A. P.; Lenz, J. S.; Dadhania, D.; Lee, J. R.; Suthanthiran, M.; Romero, R.; De Vlaminck, I.

10.1101/734756 — genomics — Posted on 2019-08-13

1969 Continent-wide effects of urbanization on bird and mammal genetic diversity

Schmidt, C.; Domaratzki, M.; Bowman, J.; Kinnunen, R. P.; Garroway, C. J.

10.1101/733170 — evolutionary biology — Posted on 2019-08-13

1970 Signaling gradients in surface dynamics as basis for planarian regeneration

Scheel, A.; Stevens, A.; Tenbrock, C.

10.1101/733246 — developmental biology — Posted on 2019-08-13

1971 Beyond local gradient-sensing: memory effects in bacterial chemotactic navigation

Gosztolai, A.; Barahona, M.

10.1101/733345 — biophysics — Posted on 2019-08-13

1972 Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 3.0

Deutsch, E. W.; Lane, L.; Overall, C. M.; Bandeira, N.; Baker, M. S.; Pineau, C.; Moritz, R. L.; Corrales, F.; Orchard, S.; Van Eyk, J. E.; Paik, Y.-K.; Weintraub, S. T.; Vandenbrouck, Y.; Omenn, G. S.

10.1101/733576 — bioinformatics — Posted on 2019-08-13

1973 Divergence: An R Package for Divergence Analysis of Omics Data

Dinalankara, W.; Ke, Q.; Geman, D.; Marchionni, L.

10.1101/720391 — bioinformatics — Posted on 2019-08-13

1974 Pathway and network embedding methods for prioritizing psychiatric drugs

Pershad, Y.; Guo, M.; Altman, R. B.

10.1101/728055 — bioinformatics — Posted on 2019-08-13

1975 Augmenting propulsion demands during split-belt walking increases locomotor adaptation in the asymmetric motor system

Sombric, C.; Torres-Oviedo, G.

10.1101/734749 — bioengineering — Posted on 2019-08-13

1976 Defects in the assembly of ribosomes selected for β-amino acid incorporation

Ward, F. R.; Watson, Z. L.; Ad, O.; Schepartz, A.; Cate, J. H. D.

10.1101/733584 — biochemistry — Posted on 2019-08-13

1977 A mathematical model of mitochondrial calcium-phosphate dissolution as a mechanism for persistent post-CSD vasoconstriction

Xu, S.; Chang, J. C.; Chow, C. C.; Huang, H.

10.1101/732362 — systems biology — Posted on 2019-08-13

1978 A Universal Proximity CRISPR Cas12a Assay for Ultrasensitive Detection of Nucleic Acids and Proteins

Li, Y.; Mansour, H.; Tang, Y.; Li, F.

10.1101/734582 — synthetic biology — Posted on 2019-08-13

1979 Reconstructed protein sequence evolution consistent with the evolution of C4 photosynthesis via a C2 ancestor in the Paniceae

Carvalho, D. S.; Kenchanmane Raju, S. K.; Zhang, Y.; Schnable, J.

10.1101/733493 — plant biology — Posted on 2019-08-13

1980 Pharmacological efficacy of a synergistic composition based on activators of cAMP accumulation as a wound healing agent

Martynov, A. V.; Bomko, T.; Nosalskaya, T.; Farber, B.; Brek, O.

10.1101/734814 — pharmacology and toxicology — Posted on 2019-08-13

1981 Genomic insights into the Archaea inhabiting an Australian radioactive legacy site

Vazquez-Campos, X.; Kinsela, A.; Bligh, M.; Payne, T.; Wilkins, M.; Waite, T. D.

10.1101/728089 — microbiology — Posted on 2019-08-13

Robinson, C. M.; Woods Acevedo, M.; McCune, B. T.; Pfeiffer, J. K.

10.1101/733766 — microbiology — Posted on 2019-08-13

1983 Reply: Evidence that APP gene copy number changes reflect recombinant vector contamination

Lee, M.-H.; Liu, C. S.; Zhu, Y.; Kaeser, G. E.; Rivera, R.; Romanow, W. J.; Kihara, Y.; Chun, J.

10.1101/730291 — genomics — Posted on 2019-08-13

1984 Rough substrates constrain walking speed in ants through modulation of stride frequency and not stride length

Clifton, G.; Holway, D.; Gravish, N.

10.1101/731380 — biophysics — Posted on 2019-08-13

1985 A mechanistic view of collective filament motion in active nematic networks

Striebel, M.; Graf, I. R.; Frey, E.

10.1101/732909 — biophysics — Posted on 2019-08-13

1986 Integrating untargeted metabolomics, genetically informed causal inference, and pathway enrichment to define the obesity metabolome

Hsu, Y.-H. H.; Astley, C. M.; Cole, J. B.; Vedantam, S.; Mercader, J. M.; Metspalu, A.; Fischer, K.; Fortney, K.; Morgen, E. K.; Gonzalez, C.; Gonzalez, M. E.; Esko, T.; Hirschhorn, J. N.

10.1101/734707 — bioinformatics — Posted on 2019-08-13

1987 Proteomic Profiling and Biological Characterization of Extracellular Vesicles Isolated from Human Alzheimer’s Disease Brain Tissues

Muraoka, S.; DeLeo, A. M.; Sethi, M. K.; Yukawa-Takamatsu, K.; Yang, Z.; Ko, J.; Hogan, J. D.; Daley, S. A.; Ruan, Z.; You, Y.; Wang, Y. K.; Ikezu, S.; Xia, W.; Gorantla, S.; Gendelman, H. E.; Issadore, D.; Zaia, J.; Ikezu, T.

10.1101/733477 — biochemistry — Posted on 2019-08-13

1988 NADPH consumption by L-cystine reduction creates a metabolic vulnerability upon glucose deprivation

Joly, J. H.; Delfarah, A.; Phung, P. S.; Parrish, S.; Graham, N. A.

10.1101/733162 — systems biology — Posted on 2019-08-13

1989 Redesigned upstream processing enables a 24 hour workflow from E. coli cells to cell-free protein synthesis

Levine, M. Z.; So, B.; Mullin, A. C.; Watts, K. R.; Oza, J. P.

10.1101/729699 — synthetic biology — Posted on 2019-08-13

1990 Community Attitudes on Genetic Research of Gender Identity, Sexual Orientation, and Mental Health

Thomas, T. R.; Hofammann, D.; McKenna, B. G.; Michaelson, J. J.

10.1101/685982 — scientific communication and education — Posted on 2019-08-13

1991 Altered auditory feedback induces coupled changes in formant frequencies during speech production

Tang, D.-l.; Lametti, D. R.; Watkins, K. E.

10.1101/733121 — neuroscience — Posted on 2019-08-13

1992 Parallel Distributed Networks Dissociate Episodic and Social Functions Within the Individual

DiNicola, L. M.; Braga, R. M.; Buckner, R. L.

10.1101/733048 — neuroscience — Posted on 2019-08-13

1993 Description of a new member of the family Erysipelotrichaceae: Clostridium fusiformis sp. nov., isolated from healthy human feces

Ghimire, S.; Wongkuna, S.; Scaria, J.

10.1101/734715 — microbiology — Posted on 2019-08-13

1994 Metagenomics reveals diet-specific specialization of bacterial communities in fungus gardens of grass- and dicot-cutter ants

Khadempour, L.; Fan, H.; Keefover-Ring, K.; Carlos, C.; Nagamoto, N. S.; Dam, M. A.; Pupo, M. T.; Currie, C. R.

10.1101/250993 — microbiology — Posted on 2019-08-13

1995 Th22 cells are a major contributor to the mycobacterial CD4+ T cell response and are depleted during HIV infection

Bunjun, R.; Omondi, F. M. A.; Makatsa, M. S.; Muller, T. L.; Prentice, C.; Wilkinson, R. J.; Riou, C.; Burgers, W. A.

10.1101/732263 — immunology — Posted on 2019-08-13

1996 Correlation of Infinium HumanMethylation450K andMethylationEPIC BeadChip arrays in cartilage

Cheung, K.; Burgers, M.; Young, D. A.; Cockell, S.; Reynard, L. N.

10.1101/733204 — genomics — Posted on 2019-08-13

1997 The Effects of Gene Flow from Unsampled \"Ghost\" Populations on the Estimation of Evolutionary History under the Isolation with Migration Model

Lynch, M. D.; Sethuraman, A.

10.1101/733600 — evolutionary biology — Posted on 2019-08-13

1998 Age-specific migration timing affects the energy seascape over an ecological barrier

Nourani, E.; Vansteelant, W. M. G.; Byholm, P.; Safi, K.

10.1101/733063 — ecology — Posted on 2019-08-13

1999 Auxin-induced nanoclustering of membrane signaling complexes underlies cell polarity establishment in Arabidopsis

Pan, X.; Fang, L.; Liu, J.; Senay-Aras, B.; Lin, W.; Zheng, S.; Zhang, T.; Manor, U.; Chen, W.; Yang, Z.

10.1101/734665 — cell biology — Posted on 2019-08-13

2000 quasitools: A Collection of Tools for Viral Quasispecies Analysis

Marinier, E.; Enns, E.; Tran, C.; Fogel, M.; Peters, C.; Kidwai, A.; Ji, H.; Van Domselaar, G.

10.1101/733238 — bioinformatics — Posted on 2019-08-13

2001 Geostatistical visualization of ecological interactions in tumors

Boyce, H. B.; Mallick, P.

10.1101/729368 — bioinformatics — Posted on 2019-08-13

2002 Melt electrowritten scaffolds with bone-inspired fibrous and mineral architectures to enhance BMP2 delivery and human MSC osteogenesis

Eichholz, K.; Hoey, D. A.

10.1101/734855 — bioengineering — Posted on 2019-08-13

2003 MINFLUX nanoscopy delivers multicolor nanometer 3D-resolution in (living) cells

Gwosch, K. C.; Pape, J. K.; Balzarotti, F.; Hoess, P.; Ellenberg, J.; Ries, J.; Hell, S. W.

10.1101/734251 — biophysics — Posted on 2019-08-13

2004 Conformational Heterogeneity in Human Interphase Chromosome Organization Reconciles the FISH and Hi-C Paradox

Shi, G.; Thirumalai, D.

10.1101/615120 — biophysics — Posted on 2019-08-13

2005 Genomic hypervariability of phage Andromeda is unique among known dsDNA viruses

Magill, D. J.; Skvortsov, T.; Kulakov, L. A.

10.1101/619015 — microbiology — Posted on 2019-08-13

2006 On the emergence of structural complexity in RNA replicators.

G. Oliver, C.; Reinharz, V.; Waldispühl, J.

10.1101/218990 — evolutionary biology — Posted on 2019-08-13

2007 Do El Nino events beget generations of reproductively deficient adults?

Ortega, S.; Rodriguez, C.; Drummond, H.

10.1101/594226 — ecology — Posted on 2019-08-13

2008 Fascin regulates protrusions and delamination to promote invasive, collective cell migration in vivo.

Lamb, M. C.; Anliker, K. K.; Tootle, T. L.

10.1101/734475 — cell biology — Posted on 2019-08-13

2009 Improved assembly and variant detection of a haploid human genome using single-molecule, high-fidelity long reads

Vollger, M. R.; Logsdon, G. A.; Audano, P. A.; Sulovari, A.; Porubsky, D.; Peluso, P.; Wenger, A. M.; Concepcion, G. T.; Kronenberg, Z. N.; Munson, K. M.; Baker, C.; Sanders, A. D.; Spierings, D. C. J.; Lansdorp, P. M.; Surti, U.; Hunkapiller, M. W.; Eichler, E. E.

10.1101/635037 — genomics — Posted on 2019-08-13

2010 Mechanotransduction-dependent control of stereocilia dimensions and row identity in inner hair cells

Krey, J. F.; Chatterjee, P.; Dumont, R. A.; Choi, D.; Bird, J. E.; Barr-Gillespie, P. G.

10.1101/731455 — cell biology — Posted on 2019-08-13

2011 Direct observation of independently moving replisomes in Escherichia coli

Japaridze, A.; Gogou, C.; Kerssemakers, J. W. J.; Nguyen, H. M.; Dekker, C.

10.1101/733956 — cell biology — Posted on 2019-08-13

2012 Cellular contractile forces emerge from time and F-actin dependent non-mechanosensitive displacements

Feld, L.; Kellerman, L.; Mukherjee, A.; Livne, A.; Bouchbinder, E.; Wolfenson, H.

10.1101/733303 — cell biology — Posted on 2019-08-13

2013 The BUBR1 pseudokinase domain promotes efficient kinetochore PP2A-B56 recruitment to regulate spindle checkpoint silencing and chromosome alignment

Elowe, S.; Gama Braga, L.; Landry, C.; Cisneros, A.; Mathieu, M. M.; Thebault, P.; Garand, C.; Lottin, B.; Garcia, P.; Clerc, M.

10.1101/733378 — cell biology — Posted on 2019-08-13

2014 Direct comparison of clathrin-mediated endocytosis in budding and fission yeast reveals conserved and evolvable features

Sun, Y.; Schoeneberg, J.; Chen, S.; Jiang, T.; Kaplan, C.; Xu, K.; Pollard, T.; Drubin, D. G.

10.1101/733543 — cell biology — Posted on 2019-08-13

2015 Dysfunction of Torr causes a Harlequin-type ichthyosis-like phenotype in Drosophila melanogaster

Wang, Y.; Norum, M.; Oehl, K.; Yang, Y.; Zuber, R.; Yang, J.; Farine, J.-P.; Gehring, N.; Floetenmeyer, M.; Ferveur, J.-F.; Moussian, B.

10.1101/734400 — cell biology — Posted on 2019-08-13

2016 The heme biosynthetic enzyme, 5-aminolevulinic acid synthase (ALAS), and GTPases in control of mitochondrial dynamics and ER contact sites, regulate heme mobilization to the nucleus.

Martinez-Guzman, O.; Willoughby, M. M.; Saini, A.; Dietz, J. V.; Bohovych, I.; Medlock, A. E.; Khalimonchuk, O.; Reddi, A. R.

10.1101/734780 — cell biology — Posted on 2019-08-13

2017 The potentials and pitfalls of a human cervical organoid model including Langerhans cells

Jackson, R.; Lukacs, J. D.; Zehbe, I.

10.1101/733501 — cell biology — Posted on 2019-08-13

2018 Atypically larger variability of resource allocation accounts for visual working memory deficits in schizophrenia

Zhao, Y.; Ma, T.; Ran, X.; Zhang, L.; Zhang, R.; Ku, Y.

10.1101/424523 — neuroscience — Posted on 2019-08-13

2019 S3norm: simultaneous normalization of sequencing depth and signal-to-noise ratio in epigenomic data

Xiang, G.; Keller, C.; Giardine, B.; An, L.; Li, Q.; Hardison, R.; Zhang, Y.

10.1101/506634 — bioinformatics — Posted on 2019-08-13

2020 Movement abilities and brain development in preschoolers born very preterm

Hasler, H. M.; Fuller, M. G.; Vaucher, Y. E.; Brown, T. T.; Stiles, J.; Dale, A. M.; Jernigan, T. L.; Akshoomoff, N.

10.1101/734319 — neuroscience — Posted on 2019-08-13

2021 The homeoprotein ENGRAILED-1 promotes motoneuron survival and sustains motor functions

Vargas Abonce, S. E.; Leboeuf, M.; Moya, K. L.; Prochiantz, A. L.

10.1101/734020 — neuroscience — Posted on 2019-08-13

2022 A genetic, genomic, and computational resource for exploring neural circuit function

Davis, F. P.; Nern, A.; Picard, S.; Reiser, M. B.; Rubin, G. M.; Eddy, S. R.; Henry, G. L.

10.1101/385476 — neuroscience — Posted on 2019-08-13

2023 MirGeneDB 2.0: The metazoan microRNA complement

Fromm, B.; Domanska, D.; Hoye, E.; Ovchinnikov, V.; Kang, W.; Aparicio-Puerta, E.; Johansen, M.; Flatmark, K.; Mathelier, A. L.; Hovig, E.; Hackenberg, M.; Friedlander, M. R.; Peterson, K. J.

10.1101/258749 — genomics — Posted on 2019-08-13

2024 Identification of new inhibitors of the Toxoplasma gondii by using in-silico drug repurposing

Kadkhodamohammadi, M.; Jaberi, M.; Babaei Akerdi, R.; Karimimousivandi, P.; Ahmadi, A.; Aliyar, M.

10.1101/560284 — bioinformatics — Posted on 2019-08-13

2025 Cerebral Dopamine Neurotrophic Factor regulates multiple neuronal subtypes and social behavior in zebrafish

Chen, Y.-C.; Baronio, D.; Semenova, S.; Abdurakhmanova, S.; Panula, P.

10.1101/733949 — neuroscience — Posted on 2019-08-13

2026 Effect of systemic treatment with Tauroursodeoxycholic Acid (TUDCA) on retinal ganglion cell death following optic nerve crush

Li, Y.; Zhang, X.; Wang, J.; Sellers, J. T.; .Boyd, A. P.; Nickerson, J. M.; Boatright, J. H.

10.1101/733568 — neuroscience — Posted on 2019-08-13

2027 MCF2 is linked to a complex perisylvian syndrome and affects cortical lamination

Molinard-Chenu, A.; Fluss, J.; Guipponi, M.; Laurent, S.; Dayer, A.

10.1101/733444 — neuroscience — Posted on 2019-08-13

2028 Lysosomal perturbations in dopaminergic neurons derived from induced pluripotent stem cells with PARK2 mutation

Okarmus, J.; Bogetofte, H.; Schmidt, S.; Ryding, M.; Lopez, S. G.; Martinez-Serrano, A.; Hyttel, P.; Meyer, M.

10.1101/734244 — neuroscience — Posted on 2019-08-13

2029 Dynamic synergetic configurations of resting-state networks in ADHD.

Kaboodvand, N.; Iravani, B.; Fransson, P.

10.1101/734111 — neuroscience — Posted on 2019-08-13

2030 SHYBRID: A graphical tool for generating hybrid ground-truth spiking data for evaluating spike sorting performance

Wouters, J.; Kloosterman, F.; Bertrand, A.

10.1101/734061 — neuroscience — Posted on 2019-08-13

2031 Variations in Brain Morphometry Among Healthy Preschoolers Born Very Preterm

Hasler, H. M.; Brown, T. T.; Akshoomoff, N.

10.1101/734277 — neuroscience — Posted on 2019-08-13

2032 Differences in Early and Late Pattern-Onset Visual-Evoked Potentials between Self-Reported Migraineurs and Controls

Fong, C. Y.; Law, W. H. C.; Braithwaite, J.; Mazaheri, A.

10.1101/733816 — neuroscience — Posted on 2019-08-13

2033 Is Vagus Stimulation Brain Washing?

Cheng, K. P.; Brodnick, S. K.; Blanz, S. L.; Zeng, W.; Kegel, J.; Pisaniello, J. A.; Ness, J. P.; Ross, E.; Nicolai, E. N.; Settell, M. L.; Trevathan, J. K.; Poore, S. O.; Suminski, A. J.; Williams, J. C.; Ludwig, K. A.

10.1101/733410 — neuroscience — Posted on 2019-08-13

2034 Decoding the sound of hand-object interactions in primary somatosensory cortex

Bailey, K. M.; Giordano, B. L.; Kaas, A.; Smith, F. W.

10.1101/732669 — neuroscience — Posted on 2019-08-13

2035 CHD8 regulates the balance between proliferation and differentiation of human iPSCs in neural development

Liu, W.; Dong, W.; Hoffman, E. J.; Fernandez, T. V.; Gupta, A. R.

10.1101/732693 — neuroscience — Posted on 2019-08-13

2036 Profiling of presynaptic mRNAs reveals a role for axonal PUMILIOs in associative memory formation

Arey, R. N.; Kaletsky, R.; Murphy, C. T.

10.1101/733428 — neuroscience — Posted on 2019-08-13

2037 Structured connectivity exploits NMDA non-linearitites to induce dimensionally diverse responses in a PFC circuit

Stefanou Stamatiadis, S.; Papoutsi, A.; Poirazi, P.

10.1101/733519 — neuroscience — Posted on 2019-08-13

2038 Development and application of eDNA-based tools for the conservation of white-clawed crayfish

Troth, C. R.; Burian, A.; Mauvisseau, Q.; Bulling, M.; Nightingale, J.; Mauvisseau, C.; Sweet, M. J.

10.1101/732941 — ecology — Posted on 2019-08-13

2039 Signaling gradients in surface dynamics as basis for planarian regeneration

Scheel, A.; Stevens, A.; Tenbrock, C.

10.1101/733246 — developmental biology — Posted on 2019-08-13

2040 Placental neurosteroids shape cerebellar development and social behaviour

Vacher, C.-M.; O'Reilly, J. J.; Salzbank, J.; Lacaille, H.; Bakalar, D.; Sebaoui-Illoul, S.; Liere, P.; Clarkson-Paredes, C.; Sasaki, T.; Sathyanesan, A.; Imamura Kawasawa, Y.; Popratiloff, A.; Hashimoto-Torii, K.; Gallo, V.; Schumacher, M.; Penn, A. A.

10.1101/730150 — neuroscience — Posted on 2019-08-13

2041 Unfolding and identification of membrane proteins from native cell membranes

Galvanetto, N.; Maity, S.; Ilieva, N.; Laio, A.; Torre, V.

10.1101/732933 — biophysics — Posted on 2019-08-13

2042 Efficient phase coding in hippocampal place cells

Seenivasan, P.; Narayanan, R.

10.1101/630319 — neuroscience — Posted on 2019-08-13

2043 Selective enhancement of alcohol aversion by nicotinic acetylcholine receptor drugs

Touchette, J. C.; Robinson, J. M.; Moen, J. K.; Lee, A. M.

10.1101/723916 — neuroscience — Posted on 2019-08-13

2044 Glial Induction of Human Bone Marrow Stromal Cells: A fast & safe glial progenitor cell-based therapy for congenital myelin disorders of the central nervous system

Lam, G.; Shea, G. K.-H.; Wu, K. L. K.; Li, M. T.-S.; Kwok, C. H.; Wong, C. Y.; Tsui, A. Y. P.; Shum, D. K. Y.; Chan, Y. S.

10.1101/658997 — neuroscience — Posted on 2019-08-13

2045 Conservation genomic analysis reveals ancient introgression and declining levels of genetic diversity in Madagascar’s hibernating dwarf lemurs

Williams, R.; Blanco, M. B.; Poelstra, J. W.; Hunnicutt, K. E.; Comeault, A. A.; Yoder, A. D.

10.1101/620724 — genomics — Posted on 2019-08-13

2046 Dopamine waves as a mechanism for spatiotemporal credit assignment

Hamid, A. A.; Frank, M. J.; Moore, C. I.

10.1101/729640 — neuroscience — Posted on 2019-08-13

2047 Discovery of a Pseudomonas aeruginosa Type VI secretion system toxin targeting bacterial protein synthesis using a global genomics approach

Nolan, L. M.; Cain, A. K.; Manoli, E.; Sainz-Polo, M. A.; Dougan, G.; Mavridou, D. A. I.; Albesa-Jove, D.; Parkhill, J.; Filloux, A.

10.1101/733030 — microbiology — Posted on 2019-08-13

2048 Early post-zygotic mutations contribute to congenital heart disease

Hsieh, A.; Morton, S. U.; Willcox, J. A.; Gorham, J. M.; Tai, A. C.; Qi, H.; DePalma, S.; McKean, D.; Griffin, E.; Manheimer, K. B.; Bernstein, D.; Kim, R. W.; Newburger, J. W.; Porter, G. A.; Srivastava, D.; Tristani-Firouzi, M.; Brueckner, M.; Lifton, R. P.; Goldmuntz, E.; Gelb, B. D.; Chung, W. K.; Seidman, C.; Seidman, J. G.; Shen, Y.

10.1101/733105 — bioinformatics — Posted on 2019-08-13

2049 Anticipating critical transitions in epithelial-hybrid-mesenchymal cell-fate determination

Sarkar, S.; Sinha, S. K.; Levine, H.; Jolly, M. K.; Dutta, P. S.

10.1101/733006 — systems biology — Posted on 2019-08-13

2050 DeepRF: Ultrafast population receptive field mapping with deep learning

Thielen, J.; Guclu, U.; Gucluturk, Y.; Ambrogioni, L.; Bosch, S. E.; van Gerven, M.

10.1101/732990 — neuroscience — Posted on 2019-08-13

2051 Evaluating the relationships between the legal and illegal international wildlife trades

Tittensor, D.; Harfoot, M. B. J.; McLardy, C.; Britten, G.; Kecse-Nagy, K.; Landry, B.; Outhwaite, W.; Price, B.; Sinovas, P.; Blanc, J.; Burgess, N.; Malsch, K.

10.1101/726075 — ecology — Posted on 2019-08-13

2052 Peculiar cases of a \"sleeping\" brain in alert cancer patients

Benveniste, H.; Vaska, P.; Franceschi, D.; Salerno, M.; Rizwan, S.; Lee, H.; Logan, J.; Rothman, D.; Lazebnik, Y.; Volkow, N. D.; Bilfinger, T. V.

10.1101/732230 — cancer biology — Posted on 2019-08-13

2053 Probability of Change in Life: amino acid changes in single nucleotide substitutions

Chan, K. F.; Koukouravas, S.; Yeo, J. Y.; Koh, D. W. S.; Gan, S. K.

10.1101/729756 — molecular biology — Posted on 2019-08-13

2054 Essential dynamic interdependence of FtsZ and SepF for Z-ring and septum formation in Corynebacterium glutamicum

Sogues, A.; Martinez, M.; Gaday, Q.; Ben Assaya, M.; Grana, M.; Voegele, A.; VanNieuwenhze, M.; England, P.; Haouz, A.; Chenal, A.; Trepout, S.; Duran, R.; Wehenkel, A. M.; Alzari, P. M.

10.1101/732925 — microbiology — Posted on 2019-08-13

2055 Rethinking global carbon storage potential of trees. A comment on Bastin et. al 2019

Taylor, S. D.; Marconi, S.

10.1101/730325 — ecology — Posted on 2019-08-13

2056 Laser capture microdissection coupled mass spectrometry (LCM-MS) for spatially resolved analysis of formalin-fixed and stained human lung tissues

Herrera, J. A.; Mallikarjun, V.; Rosini, S.; Montero, M. A.; Warwood, S.; O'Caulian, R.; Knight, D.; Schwartz, M. A.; Swift, J.

10.1101/721373 — biochemistry — Posted on 2019-08-13

2057 Demographic history, linked selection, and recombination shape the genomic landscape of a broadly distributed Pacific salmon.

Rougemont, Q.; Moore, J.-S.; Leroy, T.; Normandeau, E.; Rondeau, E.; Withler, R.; Van Doornik, D.; Crane, P.; Naish, K.; Garza, J.-C.; Beacham, T. D.; Koop, B.; Bernatchez, L.

10.1101/732750 — evolutionary biology — Posted on 2019-08-13

2058 Bifrost - Highly parallel construction and indexing of colored and compacted de Bruijn graphs

Holley, G.; Melsted, P.

10.1101/695338 — bioinformatics — Posted on 2019-08-13

2059 Selective integration during sequential sampling in posterior neural signals

Luyckx, F.; Spitzer, B.; Blangero, A.; Tsetsos, K.; Summerfield, C.

10.1101/642371 — neuroscience — Posted on 2019-08-13

2060 Variation across 141,456 human exomes and genomes reveals the spectrum of loss-of-function intolerance across human protein-coding genes

Karczewski, K. J.; Francioli, L. C.; Tiao, G.; Cummings, B. B.; Alföldi, J.; Wang, Q.; Collins, R. L.; Laricchia, K. M.; Ganna, A.; Birnbaum, D. P.; Gauthier, L. D.; Brand, H.; Solomonson, M.; Watts, N. A.; Rhodes, D.; Singer-Berk, M.; England, E. M.; Seaby, E. G.; Kosmicki, J. A.; Walters, R. K.; Tashman, K.; Farjoun, Y.; Banks, E.; Poterba, T.; Wang, A.; Seed, C.; Whiffin, N.; Chong, J. X.; Samocha, K. E.; Pierce-Hoffman, E.; Zappala, Z.; O'Donnell-Luria, A. H.; Vallabh Minikel, E.; Weisburd, B.; Lek, M.; Ware, J. S.; Vittal, C.; Armean, I. M.; Bergelson, L.; Cibulskis, K.; Connolly, K. M.

10.1101/531210 — genomics — Posted on 2019-08-13

2061 An Osteocalcin-deficient mouse strain without endocrine abnormalities

Diegel, C. R.; Hann, S.; Ayturk, U. M.; Hu, J. C. W.; Lim, K.-e.; Droscha, C. J.; Madaj, Z. B.; Foxa, G. E.; Izaguirre, I.; VARI Vivarium and Transgenics Core, ; Paracha, N.; Pidhaynyy, B.; Dowd, T. L.; Robling, A. G.; Warman, M. L.; Williams, B. O.

10.1101/732800 — genetics — Posted on 2019-08-13

2062 High-pass filtering artifacts in multivariate classification of neural time series data

van Driel, J.; Olivers, C. N. L.; Fahrenfort, J. J.

10.1101/530220 — neuroscience — Posted on 2019-08-13

2063 Detection of genomic alterations in breast cancer with circulating tumour DNA sequencing

Kleftogiannis, D.; Ho, D.; Liew, J. X.; Poon, P.; Gan, A.; Ng, R. C.-H.; Tan, B. K.-T.; Tay, K. H.; Lim, S.-H.; Tan, G. S.; Shih, C. C.; Lim, T.; Lee, A. S.-G.; Tan, I.; Yap, Y.-S.; Ng, S.

10.1101/733691 — genomics — Posted on 2019-08-13

2064 Nanopore-based genome assembly and the evolutionary genomics of basmati rice

Choi, J. Y.; Lye, Z.; Groen, S.; Dai, X.; Rughani, P.; Zaaijer, S.; Harrington, E.; Juul, S.; Purugganan, M.

10.1101/396515 — evolutionary biology — Posted on 2019-08-13

2065 Comparing transcriptional dynamics of the epithelial-mesenchymal transition

Cook, D. P.; Vanderhyden, B. C.

10.1101/732412 — cancer biology — Posted on 2019-08-13

2066 Transcriptome computational workbench (TCW): analysis of single and comparative transcriptomes

Soderlund, C. A.

10.1101/733311 — bioinformatics — Posted on 2019-08-13

2067 An integrative approach uncovers genes with perturbed interactions in cancers

Kobren, S. N.; Chazelle, B.; Singh, M.

10.1101/733485 — bioinformatics — Posted on 2019-08-13

2068 Unequal interactions between alcohol and nicotine co-consumption: Suppression and enhancement of concurrent drug intake

DeBaker, M. C.; Moen, J. K.; Robinson, J. M.; Wickman, K.; Lee, A. M.

10.1101/601641 — pharmacology and toxicology — Posted on 2019-08-13

2069 Effect of Interpopulation Spike-Timing-Dependent Plasticity on Synchronized Rhythms in Neuronal Networks with Inhibitory and Excitatory Populations

Kim, S.-Y.; Lim, W.

10.1101/576314 — neuroscience — Posted on 2019-08-13

2070 Pervasive horizontal pleiotropy in human genetic variation is driven by extreme polygenicity of human traits and diseases

Jordan, D. M.; Verbanck, M.; Do, R.

10.1101/311332 — genetics — Posted on 2019-08-13

2071 The wheat Seven in Absentia gene is associated with increases in biomass and yield in hot climates

Thomelin, P.; Bonneau, J.; Brien, C.; Suchecki, R.; Baumann, U.; Kalambettu, P.; Langridge, P.; Tricker, P. J.; Fleury, D.

10.1101/726802 — genetics — Posted on 2019-08-13

2072 Modeling predicts that CRISPR-based activators, unlike CRISPR-based repressors, scale well with increasing gRNA competition and dCas9 bottlenecking

Clamons, S.; Murray, R.

10.1101/719278 — synthetic biology — Posted on 2019-08-13

2073 Functional imaging of microbial interactions with tree roots using a microfluidics setup

Noirot-Gros, M.-F. S.; Shinde, S.; Akins, C.; Johnson, J. L.; Zerbs, S.; Wilton, R.; Kemner, K. M.; Noirot, P. H.; Babnigg, G.

10.1101/506774 — physiology — Posted on 2019-08-13

2074 Detailed profiles of histone modification in male germ line cells of the young and aged mice

Tatehana, M.; Kimura, R.; Mochizuki, K.; Osumi, N.

10.1101/635961 — developmental biology — Posted on 2019-08-13

2075 openTSNE: a modular Python library for t-SNE dimensionality reduction and embedding

Policar, P. G.; Strazar, M.; Zupan, B.

10.1101/731877 — bioinformatics — Posted on 2019-08-13

2076 Stimulus-specific adaptation to behaviorally-relevant sounds in awake rats

Yaron, A.; Jankowski, M. M.; Badrieh, R.; Nelken, I.

10.1101/732826 — neuroscience — Posted on 2019-08-13

2077 Environmental DNA (eDNA) metabarcoding of pond water as a tool to survey conservation and management priority mammals

Harper, L. R.; Lawson Handley, L.; Carpenter, A. I.; Ghazali, M.; Di Muri, C.; Macgregor, C. J.; Logan, T. W.; Law, A.; Breithaupt, T.; Read, D. S.; McDevitt, A.; Hänfling, B.

10.1101/546218 — molecular biology — Posted on 2019-08-13

2078 Genetic networks underlying natural variation in basal and induced activity levels in Drosophila melanogaster

Watanabe, L. P.; Gordon, C. J.; Momeni, M. Y.; Riddle, N. C.

10.1101/444380 — genetics — Posted on 2019-08-13

2079 The quorum sensing transcription factor AphA directly regulates natural competence in Vibrio cholerae

Haycocks, J.; Warren, G.; Walker, L.; Chlebek, J.; Dalia, T.; Dalia, A.; Grainger, D. C.

10.1101/732818 — microbiology — Posted on 2019-08-12

2080 Reciprocal monoallelic expression of ASAR lncRNA genes controls replication timing of human chromosome 6.

Heskett, M. B.; Smith, L.; Spellman, P.; Thayer, M. J.

10.1101/732784 — genetics — Posted on 2019-08-12

2081 An agent-based model of insect resistance management and mitigation for Bt maize: A social science perspective

Saikai, Y.; Mitchell, P.; Hurley, T.

10.1101/732776 — ecology — Posted on 2019-08-12

2082 Cell-substrate adhesion drives Scar/WAVE activation and phosphorylation, which controls pseudopod lifetime

Singh, S.; Thomason, P.; Lilla, S.; Schacks, M.; Tang, Q.; Goode, B.; Machesky, L.; Rottner, K.; Insall, R. H.

10.1101/732768 — cell biology — Posted on 2019-08-12

2083 Cytosolic Proteostatic Adaptation to Mitochondrial Stress Causes Progressive Muscle Wasting

Chen, X. J.; Wang, X.; Middleton, F. A.; Tawil, R.

10.1101/733097 — cell biology — Posted on 2019-08-12

2084 A statistical method for joint estimation of cis-eQTLs and parent-of-orign effects using an orthogonal framework with RNA-seq data

Xiao, F.; Deng, S.

10.1101/732792 — genetics — Posted on 2019-08-12

2085 Transcriptome-based molecular staging of human stem cell-derived retinal organoids uncovers accelerated photoreceptor differentiation by 9-cis retinal

Kaya, K. D.; Chen, H. Y.; Brooks, M. J.; Kelley, R. A.; Shimada, H.; Nagashima, K.; de Val, N.; Drinnan, C. T.; Gieser, L.; Kruczek, K.; Erceg, S.; Li, T.; Lukovic, D.; Adlakha, Y.; Welby, E.; Swaroop, A.

10.1101/733071 — developmental biology — Posted on 2019-08-12

2086 Molecular signatures for inflammation vary across cancer types and correlate significantly with tumor stage, gender and vital status of patients

So, A. R.; Si, A.; Lopez, D.; Pellegrini, M.

10.1101/732867 — cancer biology — Posted on 2019-08-12

2087 Pseudolesion in the right parafissural liver parenchyma on CT: the base is found in embryology and collagen content.

Klein, W. M.; Sonnemans, L. J. P.; Franckenberg, S.; Fliss, B.; Gascho, D.; Prokop, M.; Lamers, W. H.; Hikspoors, J. P.; Thali, M. J.; Flach, P. M.

10.1101/732859 — physiology — Posted on 2019-08-12

2088 Insights on aquatic microbiome of the Indian Sundarbans mangrove areas

Dhal, P. K.; Kopprio, G. A.; Gärdes, A.

10.1101/732842 — microbiology — Posted on 2019-08-12

2089 Assignment of frost tolerant coast redwood trees of unknown origin to populations within their natural range using nuclear and chloroplast microsatellite genetic markers

Breidenbach, N.; Gailing, O.; Krutovsky, K. V.

10.1101/732834 — genetics — Posted on 2019-08-12

2090 Demographic history, linked selection, and recombination shape the genomic landscape of a broadly distributed Pacific salmon.

Rougemont, Q.; Moore, J.-S.; Leroy, T.; Normandeau, E.; Rondeau, E.; Withler, R.; Van Doornik, D.; Crane, P.; Naish, K.; Garza, J.-C.; Beacham, T. D.; Koop, B.; Bernatchez, L.

10.1101/732750 — evolutionary biology — Posted on 2019-08-12

2091 DUX4 regulates oocyte to embryo transition in human

Vuoristo, S.; Hyden-Granskog, C.; Yoshihara, M.; Gawriyski, L.; Damdimopoulos, A.; Bhagat, S.; Hashimoto, K.; Krjutskov, K.; Ezer, S.; Paluoja, P.; Lundin, K.; Paloviita, P.; Recher, G.; Ranga, V.; Airenne, T.; Tamirat, M.; Jouhilahti, E.-M.; Otonkoski, T.; Tapanainen, J. S.; Kawaji, H.; Murakawa, Y.; Bürglin, T. R.; Varjosalo, M.; Johnson, M. S.; Tuuri, T.; Katayama, S.; Kere, J.

10.1101/732289 — developmental biology — Posted on 2019-08-12

2092 The finger 2 tip loop of Activin A is required for the formation of its non-signaling complex with ACVR1 and type II Bone Morphogenetic Protein receptors

Idone, V.; Corpina, R. A.; Goebel, E. J.; Cunanan, C. J.; Dimitriou, A.; Kim, H.; Zhang, Q.; Rafique, A.; Leidich, R.; Wang, X.; McClain, J.; Murphy, A. J.; Thompson, T. B.; Economides, A. N.

10.1101/733147 — cell biology — Posted on 2019-08-12

2093 Stimulus-specific adaptation to behaviorally-relevant sounds in awake rats

Yaron, A.; Jankowski, M. M.; Badrieh, R.; Nelken, I.

10.1101/732826 — neuroscience — Posted on 2019-08-12

2094 TRiC activates the unfolded protein response and protects starved stem cells by modulating energy and lipid metabolism during planarian regeneration

Gutierrez-Gutierrez, O.; Felix, D. A.; Salvetti, A.; Thems, A.; Pietsch, S.; Koeberle, A.; Rudolph, K. L.; Gonzalez-Estevez, C.

10.1101/732875 — developmental biology — Posted on 2019-08-12

2095 An In-Silico Investigation of Menthol Metabolism

Limpanuparb, T.; Lorpaiboon, W.; Chinsukserm, K.

10.1101/618975 — biochemistry — Posted on 2019-08-12

2096 Geometric coupling of helicoidal ramps and curvature-inducing proteins in organelle membranes

Chabanon, M.; Rangamani, P.

10.1101/635466 — biophysics — Posted on 2019-08-12

2097 Caveolae and scaffold detection from single molecule localization microscopy data using deep learning

Khater, I. M.; Aroca-Ouellette, S. T.; Meng, F.; Nabi, I. R.; Hamarneh, G.

10.1101/526327 — molecular biology — Posted on 2019-08-12

2098 Intraspecific genomic variation and local adaptation in a young hybrid species

Cuevas, A.; Ravinet, M.; Saetre, G.-P.; Eroukhmanoff, F.

10.1101/732313 — evolutionary biology — Posted on 2019-08-12

2099 vH+-ATPase-induced intracellular acidification is critical to glucose-stimulated insulin secretion

Naik, A. R.; Formosa, B. J.; Pulvender, R. G.; Liyanaarachchi, A. G.; Jena, B. P.

10.1101/732222 — cell biology — Posted on 2019-08-12

2100 Automated and rapid self-report of nociception in transgenic mice.

Black, C. J.; Allawala, A. B.; Bloye, K.; Vanent, K. N.; Edhi, M. M.; Saab, C. Y.; Borton, D. A.

10.1101/732305 — animal behavior and cognition — Posted on 2019-08-12

2101 Predicting metabolism during growth by osmotic cell expansion

Shameer, S.; Vallarino, J. G.; Fernie, A. R.; Ratcliffe, R. G.; Sweetlove, L. J.

10.1101/731232 — plant biology — Posted on 2019-08-12

2102 Predicting the global mammalian viral sharing network using phylogeography

Albery, G. F.; Eskew, E. A.; Ross, N.; Olival, K. J.

10.1101/732255 — ecology — Posted on 2019-08-12

2103 openTSNE: a modular Python library for t-SNE dimensionality reduction and embedding

Policar, P. G.; Strazar, M.; Zupan, B.

10.1101/731877 — bioinformatics — Posted on 2019-08-12

2104 Inferring and validating mechanistic models of neural microcircuits based on spike-train data

Ladenbauer, J.; McKenzie, S.; English, D. F.; Hagens, O.; Ostojic, S.

10.1101/261016 — neuroscience — Posted on 2019-08-12

2105 Alpha oscillations in the human brain implement distractor suppression independent of target selection

Woestmann, M.; Alavash, M.; Obleser, J.

10.1101/721019 — neuroscience — Posted on 2019-08-12

2106 A new twist on bacterial motility - Two distinct type IV pili revealed by cryoEM

Neuhaus, A.; Selvaraj, M.; Salzer, R.; Langer, J.; Kruse, K.; Sanders, K.; Daum, B.; Averhoff, B.; Gold, V.

10.1101/720938 — biophysics — Posted on 2019-08-12

2107 Thera-SAbDab: the Therapeutic Structural Antibody Database

Raybould, M. I. J.; Marks, C.; Lewis, A. P.; Shi, J.; Bujotzek, A.; Taddese, B.; Deane, C.

10.1101/707521 — immunology — Posted on 2019-08-12

2108 Magnetic Resonance measurements of cellular and sub-cellular membrane structures in live and fixed neural tissue

Williamson, N. H.; Ravin, R.; Benjamini, D.; Merkle, H.; Falgairolle, M.; O'Donovan, M. J.; Blivis, D.; Cai, T. X.; Gorash, N. S.; Bai, R.; Basser, P.

10.1101/694661 — biophysics — Posted on 2019-08-12

2109 Evolutionary dynamics of abundant 7 bp satellites in the genome of Drosophila virilis

Flynn, J. M.; Long, M.; Wing, R. A.; Clark, A. G.

10.1101/693077 — genomics — Posted on 2019-08-12

2110 Integration of Alzheimer’s disease genetics and myeloid genomics reveals novel disease risk mechanisms

Novikova, G.; Kapoor, M.; TCW, J.; Abud, E. M.; Efthymiou, A. G.; Cheng, H.; Fullard, J. F.; Bendl, J.; Roussos, P.; Poon, W. W.; Hao, K.; Marcora, E.; Goate, A. M.

10.1101/694281 — genomics — Posted on 2019-08-12

2111 Maintenance of fertility in the face of meiotic drive

Meade, L. C.; Finnegan, S.; Kad, R.; Fowler, K.; Pomiankowski, A.

10.1101/675108 — evolutionary biology — Posted on 2019-08-12

2112 Selective integration during sequential sampling in posterior neural signals

Luyckx, F.; Spitzer, B.; Blangero, A.; Tsetsos, K.; Summerfield, C.

10.1101/642371 — neuroscience — Posted on 2019-08-12

2113 CYLD, a Mechanosensitive Deubiquitinase, Regulates TGFβ for Load-induced Bone Formation and Mediates PGE2-dependent Repression of TGFβ Signaling in Osteocytes

Nguyen, J.; Massoumi, R.; Alliston, T.

10.1101/665802 — molecular biology — Posted on 2019-08-12

2114 Is adaptation limited by mutation? A timescale dependent effect of genetic diversity on the adaptive substitution rate in animals.

Rousselle, M.; Simion, P.; Tilak, M.-K.; Figuet, E.; Nabholz, B.; Galtier, N.

10.1101/643619 — evolutionary biology — Posted on 2019-08-12

2115 Predation strategies of the bacterium Bdellovibrio bacteriovorus result in bottlenecks, overexploitation, minimal and optimal prey sizes

Summers, K.; Kreft, J.-U.

10.1101/621490 — microbiology — Posted on 2019-08-12

2116 Genetic risk underlying psychiatric and cognitive symptoms in Huntington’s Disease

Ellis, N.; Tee, A.; McAllister, B.; Massey, T.; McLauchlan, D.; Stone, T.; Correia, K.; Loupe, J.; Kim, K.-H.; Barker, D.; Hong, E. P.; Chao, M. J.; Long, J. D.; Lucente, D.; Vonsattel, J. P. G.; Mouro Pinto, R.; Elneel, K. A.; Ramos, E. M.; Mysore, J. S.; Gillis, T.; Wheeler, V. C.; Medway, C.; Hall, L.; Kwak, S.; Sampaio, C.; Ciosi, M.; Maxwell, A.; Chatzi, A.; Monckton, D.; Orth, M.; Landwehrmeyer, G. B.; Paulsen, J. S.; Shoulson, I.; Myers, R.; Duijn, E. v.; Rickards, H.; MacDonald, M.; Lee, J.-M.; Gusella, J. F.; Jones, L.; Holmans, P.

10.1101/639658 — genetics — Posted on 2019-08-12

2117 Analysis of Finnish blue mussel (Mytilus edulis L.) shell: Biomineral ultrastructure, organic-rich interfacial matrix and mechanical behavior

Mohammadi, P.; Wagermaier, W.; Penttila, M.; Linder, M. B.

10.1101/636696 — developmental biology — Posted on 2019-08-12

2118 The structural basis for RNA selectivity by the IMP family of RNA binding proteins

Biswas, J.; Patel, V. L.; Bhaskar, V.; Chao, J. A.; Singer, R. H.; Eliscovich, C.

10.1101/618587 — biochemistry — Posted on 2019-08-12

2119 CXCL5-mediated recruitment of neutrophils into the peritoneal cavity of Gdf15-deficient mice protects against abdominal sepsis

Santos, I.; Colaco, H. G.; Neves-Costa, A.; Seixas, E.; Velho, T. R.; Pedroso, D.; Barros, A.; Martins, R.; Weiss, S.; Payen, D.; Weiss, S.; Yi, H.-S.; Shong, M.; Moita, L. F.

10.1101/613901 — immunology — Posted on 2019-08-12

2120 Odor Coding of Nestmate Recognition in the Eusocial Ant Camponotus floridanus

Ferguson, S. T.; Park, K. Y.; Ruff, A.; Bakis, I.; Zwiebel, L. J.

10.1101/614719 — animal behavior and cognition — Posted on 2019-08-12

2121 Does testosterone impair men’s cognitive empathy? Evidence from two large-scale randomized controlled trials

Nadler, A.; Zava, D.; Ortiz, T.; Watson, N.; Carre, J.; Camerer, C.; Nave, G.

10.1101/516344 — neuroscience — Posted on 2019-08-12

2122 Understanding requires tracking: noise and knowledge interact in bilingual comprehension

Blanco-Elorrieta, E.; Ding, N.; Pylkkanen, L.; Poeppel, D.

10.1101/609628 — neuroscience — Posted on 2019-08-12

2123 A chronology of multicellularity evolution in cyanobacteria

Hammerschmidt, K.; Landan, G.; Tria, F. D.; Dagan, T.

10.1101/570788 — evolutionary biology — Posted on 2019-08-12

2124 The MyMOMA domain of MYO19 encodes for distinct Miro-dependent and Miro-independent mechanisms of interaction with mitochondrial membranes

Bocanegra, J. L.; Fujita, B. M.; Melton, N. R.; Cowan, J. M.; Schinski, E. L.; Tamir, T. Y.; Major, M. B.; Quintero, O. A.

10.1101/602938 — cell biology — Posted on 2019-08-12

2125 Multiplexity and Graph Signal Processing of EEG Dynamic Functional Connectivity Networks As Connectomic Biomarkers for Schizophrenia Patients: A Whole Brain Breakdown

Dimitriadis, S. I.

10.1101/551671 — neuroscience — Posted on 2019-08-12

2126 Increased signal diversity/complexity of spontaneous EEG in humans given sub-anaesthetic doses of ketamine

Farnes, N.; Juel, B. E.; Nilsen, A. S.; Romundstad, L.; Storm, J. F.

10.1101/508697 — neuroscience — Posted on 2019-08-12

2127 Optogenetic Engineering of Photoactivatable NanoCRISPR for Programmable Genome Editing

Chen, X.; Chen, Y.; Xin, H.; Wan, T.; Ping, Y.

10.1101/673715 — bioengineering — Posted on 2019-08-12

2128 Combinatorial mutagenesis of rapidly-evolving residues yields super-restrictor antiviral proteins

Colon-Thillet, R.; Hsieh, E.; Graf, L.; McLaughlin, R. N.; Young, J. M.; Kochs, G.; Emerman, M.; Malik, H. S.

10.1101/557264 — microbiology — Posted on 2019-08-12

2129 Effects of gut microbiota perturbation on Th1- and Th2-biased mice following treatment with Vancomycin

Ray, P.; Aich, P.

10.1101/516898 — microbiology — Posted on 2019-08-12

2130 Tumor Protein D54 defines a new class of intracellular transport vesicle

Larocque, G.; La-Borde, P. J.; Clarke, N. I.; Carter, N. J.; Royle, S. J.

10.1101/481754 — cell biology — Posted on 2019-08-12

2131 Pan-cancer whole genome analyses of metastatic solid tumors

Priestley, P.; Baber, J.; Lolkema, M.; Steeghs, N.; de Bruijn, E.; Duyvesteyn, K.; Haidari, S.; van Hoeck, A.; Onstenk, W.; Roepman, P.; Shale, C.; Voda, M.; Bloemendal, H.; Tjan-Heijnen, V.; van Herpen, C.; Labots, M.; Witteveen, P.; Smit, E.; Sleijfer, S.; Voest, E.; Cuppen, E.

10.1101/415133 — cancer biology — Posted on 2019-08-12

2132 Chromatin-sensitive cryptic promoters encode alternative protein isoforms in yeast.

Wei, W.; Hennig, B.; Wang, J.; Zhang, Y.; Piazza, I.; Pareja Sanchez, Y.; Chabbert, C. D.; Adjalley, S. H.; Steinmetz, L. M.; Pelechano, V.

10.1101/403543 — genomics — Posted on 2019-08-12

2133 CHC22 clathrin mediates traffic from early secretory compartments for human GLUT4 pathway biogenesis

Camus, S. M.; Camus, M. D.; Figueras-Novoa, C.; Boncompain, G.; Sadacca, L. A.; Esk, C.; Bigot, A.; Gould, G. W.; Kioumourtzoglou, D.; Perez, F.; Bryant, N. J.; Mukherjee, S.; Brodsky, F. M.

10.1101/242941 — cell biology — Posted on 2019-08-12

2134 Individuality emerging in cap making by sponge crab

Harada, K.; Kagaya, K.

10.1101/330787 — animal behavior and cognition — Posted on 2019-08-12

2135 It takes two vanilloid ligand bindings per channel to transduce painful capsaicin stimuli

Liu, T.-Y.; Chu, Y.; Mei, H.-R.; Chang, D. S.; Chuang, H.-h.

10.1101/725598 — molecular biology — Posted on 2019-08-12

2136 Empirical test of crab-clam predator-prey model predictions: storm-driven phase shift to a low-density steady state

Glaspie, C. N.; Seitz, R. D.; Lipcius, R. N.

10.1101/224097 — ecology — Posted on 2019-08-12

2137 Comparison of RNA Isolation Methods on RNA-Seq: Implications for Differential Expression and Meta-Analyses

Scholes, A. N.; Lewis, J. A.

10.1101/728014 — genomics — Posted on 2019-08-12

2138 Fungal traits important for soil aggregation

Lehmann, A.; Zheng, W.; Ryo, M.; Soutschek, K.; Rongstock, R.; Maass, S.; Rillig, M. C.

10.1101/732628 — ecology — Posted on 2019-08-12

2139 Nutrient enrichment increases soil bacterial diversity and decomposition rates of different litter types in a coastal plain wetland

Koceja, M. E.; Bledsoe, R. B.; Goodwillie, C.; Peralta, A. L.

10.1101/732883 — ecology — Posted on 2019-08-12

2140 Cellular metabolic activity marker via selective turn-ON detection of serum albumin using an NBD-based fluoroprobe

Dutta, T.; Pal, K.; Koner, A.

10.1101/732610 — cancer biology — Posted on 2019-08-12

2141 Design of Epitope Based Peptide Vaccine Against Pseudomonas Aeruginosa Fructose Bisphosphate Aldolase Protein using Immunoinformatics

Elhag, M.; Mohamed Alaagib, R.; Mohamed Ahmed, N.; Abubaker Elhadi, M.; Musa Haroun, E.; Obi Abd Albagi, S.; A.Hassan, M.

10.1101/720730 — bioinformatics — Posted on 2019-08-12

2142 Null results from a dimensional study of error-related negativity (ERN) and self-reported psychiatric symptoms

Seow, T. X.; Benoit, E.; Dempsey, C.; Jennings, M.; Maxwell, A.; McDonough, M.; Gillan, C. M.

10.1101/732594 — neuroscience — Posted on 2019-08-12

2143 Theta power and theta-gamma coupling support spatial memory retrieval

Vivekananda, U.; Bush, D.; Bisby, J. A.; Baxendale, S.; Rodionov, R.; Diehl, B.; Chowdhury, F. A.; McEvoy, A. W.; Miserocchi, A.; Walker, M.; Burgess, N.

10.1101/732735 — neuroscience — Posted on 2019-08-12

2144 Dynamic time-locking mechanism in the cortical representation of spoken words

Nora, A.; Faisal, A.; Seol, J.; Renvall, H.; Formisano, E.; Salmelin, R.

10.1101/730838 — neuroscience — Posted on 2019-08-12

2145 N-Acetyl Cysteine Alleviates Coxsackievirus B-Induced Myocarditis by Suppressing caspase-1

Wang, Y.; Zhao, S.; Chen, Y.; Wang, Y.; Wang, T.; Wo, X.; Dong, Y.; Zhang, J.; Xu, W.; Qu, C.; Feng, X.; Wu, X.; Wang, Y.; Zhong, Z.; Zhao, W.

10.1101/732677 — microbiology — Posted on 2019-08-12

2146 A prospective role for the rumen in generating antibiotic resistance

Strachan, C. R.; Mueller, A. J.; Ghanbari, M.; Neubauer, V.; Zwirzitz, B.; Thalguter, S.; Dzieciol, M.; Wetzels, S. U.; Zanghellini, J.; Wagner, M.; Schmitz-Esser, S.; Mann, E.

10.1101/729681 — microbiology — Posted on 2019-08-12

2147 Intersecting vulnerabilities: Climatic and demographic contributions to future population exposure to Aedes-borne viruses in the United States

Rohat, G.; Monaghan, A.; Hayden, M. H.; Ryan, S. J.; Wilhelmi, O. V.

10.1101/732644 — ecology — Posted on 2019-08-12

2148 BayICE: A hierarchical Bayesian deconvolution model with stochastic search variable selection

Tai, A.-S.; Tseng, G.; Hsieh, W.-P.

10.1101/732743 — genomics — Posted on 2019-08-12

2149 Individualized ctDNA Fingerprints to Monitor Treatment Response and Recurrence in Multiple Cancer Types

Li, J.; Jiang, W.; Wei, J.; Zhang, J.; Cai, L.; Luo, M.; Wang, Z.; Sun, W.; Dai, C.; Wang, C.; Wang, G.; Xu, Q.; Deng, Y.

10.1101/732503 — cancer biology — Posted on 2019-08-12

2150 Structured Reviews for Data and Knowledge Driven Research

Queralt-Rosinach, N.; Stupp, G. S.; Li, T. S.; Mayers, M.; Hoatlin, M. E.; Might, M.; Good, B. M.; Su, A. I.

10.1101/729475 — bioinformatics — Posted on 2019-08-12

2151 The role of dopaminergic nuclei in predicting and experiencing gains and losses: A 7T human fMRI study

Fontanesi, L.; Gluth, S.; Forstmann, B.; Rieskamp, J.

10.1101/732560 — neuroscience — Posted on 2019-08-12

2152 Degradation of the incretin hormone Glucagon-Like Peptide-1 (GLP-1) by Enterococcus faecalis metalloprotease GelE

LeValley, S. L.; Tomaro-Duchesneau, C.; Britton, R. A.

10.1101/732495 — microbiology — Posted on 2019-08-12

2153 Developing T cells form an immunological synapse for passage through the β-selection checkpoint

Allam, A. H.; Charnley, M.; Pham, K.; Russell, S.

10.1101/732511 — immunology — Posted on 2019-08-12

2154 Utility of the Onchocerca volvulus mitochondrial genome for delineation of parasite transmission zones

Crawford, K. E.; Hedtke, S. M.; Doyle, S. R.; Kuesel, A. C.; Armoo, S.; Osei-Atweneboana, M.; Grant, W. N.

10.1101/732446 — evolutionary biology — Posted on 2019-08-12

2155 Polygenic patterns of adaptive introgression in modern humans are mainly shaped by response to pathogens

Gouy, A.; Excoffier, L.

10.1101/732958 — evolutionary biology — Posted on 2019-08-12

2156 Comparing the utility of in vivo transposon mutagenesis approaches in yeast species to infer gene essentiality

Levitan, A.; Gale, A. N.; Dalton, E. K.; Kozan, D. W.; Cunningham, K. W.; Sharan, R.; Berman, J.

10.1101/732552 — bioinformatics — Posted on 2019-08-12

2157 Network-Based Matching of Patients and Targeted Therapies for Precision Oncology

Liu, Q.; Ha, M. J.; Bhattacharyya, R.; Garmire, L.; Baladandayuthapani, V.

10.1101/727941 — bioinformatics — Posted on 2019-08-12

2158 Children with autism observe social interactions in an idiosyncratic manner

Avni, I.; Meiri, G.; Bar-Sinai, A.; Reboh, D.; Manelis, L.; Flusser, H.; Michaelovski, A.; Menashe, I.; Dinstein, I.

10.1101/720706 — neuroscience — Posted on 2019-08-12

2159 Cytosine but not adenine base editor generates mutations in mice

Lee, H. K.; Smith, H. E.; Liu, C.; Willi, M.; Hennighausen, L.

10.1101/731927 — genomics — Posted on 2019-08-12

2160 Intraspecific genomic variation and local adaptation in a young hybrid species

Cuevas, A.; Ravinet, M.; Saetre, G.-P.; Eroukhmanoff, F.

10.1101/732313 — evolutionary biology — Posted on 2019-08-12

2161 Folding RNA in mixtures of monovalent and divalent cations: Theory and simulations

Nguyen, H. T.; Hori, N.; Thirumalai, D.

10.1101/732917 — biophysics — Posted on 2019-08-12

2162 Development of structure-function coupling in human brain networks during youth

Baum, G. L.; Cui, Z.; Roalf, D. R.; Ciric, R.; Betzel, R. F.; Larsen, B.; Cieslak, M.; Cook, P. A.; Xia, C. H.; Moore, T. M.; Ruparel, K.; Oathes, D. J.; Alexander-Bloch, A. F.; Shinohara, R. T.; Raznahan, A.; Gur, R. C.; Gur, R. E.; Bassett, D. S.; Satterthwaite, T. D.

10.1101/729004 — neuroscience — Posted on 2019-08-12

2163 A single TRPV1 amino acid controls species sensitivity to capsaicin

Chu, Y.; Cohen, B.; Chuang, H.-h. A.

10.1101/732701 — molecular biology — Posted on 2019-08-12

2164 The role of a priori-identified addiction and smoking gene sets in smoking behaviors.

Evans, L. M.; Johnson, E. C.; Melroy-Greif, W.; Hewitt, J. K.; Hoeffer, C. A.; Keller, M. C.; Saba, L.; Stitzel, J.; Ehringer, M.

10.1101/732321 — genetics — Posted on 2019-08-12

2165 Integrating Comprehensive Functional Annotations to Boost Power and Accuracy in Gene-Based Association Analysis

Quick, C.; Wen, X.; Abecasis, G.; Boehnke, M.; Kang, H. M.

10.1101/732404 — genetics — Posted on 2019-08-12

2166 Olfactory receptor subgenome and expression in a highly olfactory procellariiform seabird

Sin, S. Y. W.; Cloutier, A.; Nevitt, G.; Edwards, S. V.

10.1101/723924 — evolutionary biology — Posted on 2019-08-12

2167 Predicting the global mammalian viral sharing network using phylogeography

Albery, G. F.; Eskew, E. A.; Ross, N.; Olival, K. J.

10.1101/732255 — ecology — Posted on 2019-08-12

2168 Automated and rapid self-report of nociception in transgenic mice.

Black, C. J.; Allawala, A. B.; Bloye, K.; Vanent, K. N.; Edhi, M. M.; Saab, C. Y.; Borton, D. A.

10.1101/732305 — animal behavior and cognition — Posted on 2019-08-12

2169 A conjugation platform for CRISPR-Cas9 allows efficient β-cell engineering

Lim, D.; Sreekanth, V.; Cox, K. J.; Law, B. K.; Wagner, B. K.; Karp, J. M.; Choudhary, A.

10.1101/732354 — synthetic biology — Posted on 2019-08-12

2170 Structural basis of reiterative transcription from the pyrG and pyrBI promoters by bacterial RNA polymerase

Shin, Y.; Hedglin, M.; Murakami, K.

10.1101/732214 — molecular biology — Posted on 2019-08-12

2171 E3 Ligase UBR5 HECT domain mutations in lymphoma control maturation of B cells via alternative splicing

Swenson, S. A.; Gilbreath, T. J.; Vahle, H.; Hynes-Smith, R. W.; Law, H. C. H.; Woods, N. T.; Green, M. R.; Buckley, S. M.

10.1101/732180 — immunology — Posted on 2019-08-12

2172 Identification of 15 new bypassable essential genes of fission yeast

Takeda, A.; Saitoh, S.; Ohkura, H.; Sawin, K. E.; Goshima, G.

10.1101/732438 — genetics — Posted on 2019-08-12

2173 Adaptive Introgression Promotes Fast Adaptation In Oaks Marginal Populations

Goicoechea, P. G.; Guillardin, L.; Fernandez-Ibarrondo, L.; Valbuena-Carabana, M.; Gonzalez-Martinez, S. C.; Alia, R.; Kremer, A.

10.1101/731919 — evolutionary biology — Posted on 2019-08-12

2174 A single cell atlas of the developing Drosophila ovary identifies follicle stem cell progenitors

Slaidina, M.; Banisch, T. U.; Gupta, S.; Lehmann, R.

10.1101/732479 — developmental biology — Posted on 2019-08-12

2175 Reversible Mitochondrial Fragmentation in iPSC-Derived Cardiomyocytes from Children with DCMA, a Mitochondrial Cardiomyopathy

Rohani, L.; Machiraju, P.; Sabouny, R.; Meng, G.; Liu, S.; Zhao, T.; Iqbal, F.; Ravandi, A.; Wu, J. C.; Khan, A.; Shutt, T.; Rancourt, D.; Greenway, S. C.

10.1101/732339 — cell biology — Posted on 2019-08-12

2176 Blockade of stromal Gas6 alters cancer cell plasticity, activates NK cells and inhibits pancreatic cancer metastasis.

Mielgo, A.; Ireland, L.; Luckett, T.; Schmid, M. C.

10.1101/732149 — cancer biology — Posted on 2019-08-12

2177 Neurons expressing pathological Tau protein trigger dramatic noninflammatory changes in microglial morphology and dynamics

Hassan-Abdi, R.; Brenet, A.; Bennis, M.; Yanicostas, C.; Soussi-Yanicostas, N.

10.1101/731901 — neuroscience — Posted on 2019-08-12

2178 Loss of tissue non-specific alkaline phosphatase (TNAP) enzyme activity in cerebral microvessels is coupled to persistent neuroinflammation and behavioral deficits in late sepsis

Nwafor, D. C.; Chakraborty, S.; Brichacek, A. L.; Jun, S.; Gambill, C. A.; Wang, W.; Engler-Chiurazzi, E. B.; Dakhlallah, D. A.; Benkovic, S. A.; Brown, C. M.

10.1101/732008 — neuroscience — Posted on 2019-08-12

2179 Sleep’s impact on emotional memory: A meta-analysis of whole-night, nap, and REM sleep effects

Schaefer, S. K.; Wirth, B. E.; Staginnus, M.; Becker, N.; Michael, T.; Sopp, R.

10.1101/732651 — neuroscience — Posted on 2019-08-12

2180 Can individual and integrated water, sanitation, and handwashing interventions reduce fecal contamination in the household environment? Evidence from the WASH Benefits cluster-randomized trial in rural Kenya

Pickering, A.; Swarthout, J.; Mureithi, M.; Mboya, J.; Arnold, B. F.; Wolfe, M.; Dentz, H.; Lin, A.; Arnold, C.; Rao, G.; Stewart, C.; Ram, P. K.; Clasen, T.; Colford, J.; Null, C.

10.1101/731992 — microbiology — Posted on 2019-08-12

2181 Applications of a Novel Knowledge Discovery and Data Mining Process Model for Metabolomics

BaniMustafa, A.; Hardy, N.

10.1101/731844 — bioinformatics — Posted on 2019-08-12

2182 Identification of execution modes in the extrinsic apoptosis signaling network via Bayesian inference methods

Kochen, M. A.; Lopez, C. F.

10.1101/732396 — systems biology — Posted on 2019-08-12

2183 Systematic search for schizophrenia pathways sensitive to perturbation by immune activation

Yang, X.; Gao, Y.; Liang, X.; Ren, Z.; Li, Y.

10.1101/730655 — systems biology — Posted on 2019-08-12

2184 Analysis of Practices to Promote Reproducibility and Transparency in Anaesthesiology Research: Are Important Aspects Hidden Behind the Drapes?

Okonya, O.; Rorah, D.; Tritz, D.; Umberham, B.; Wiley, M.; Vassar, M.

10.1101/729129 — scientific communication and education — Posted on 2019-08-12

2185 Empirically Constrained Network Models for Contrast-dependent Modulation of Gamma Rhythm in V1

Zachariou, M.; Roberts, M.; Lowet, E.; De Weerd, P.; Hadjipapas, A.

10.1101/729707 — neuroscience — Posted on 2019-08-12

2186 Human oral microbiome characterization and its association with environmental microbiome revealed by the Earth Microbiome Project

Wang, J.; Li, D.; Wang, J.; Zhang, Z.

10.1101/732123 — microbiology — Posted on 2019-08-12

2187 Telomere length covaries with age across an elevational gradient in a Mediterranean lizard

Burraco, P.; Comas, M.; Reguera, S.; Zamora-Camacho, F. J.; Moreno-Rueda, G.

10.1101/732727 — ecology — Posted on 2019-08-12

2188 Loss of FBXO9 enhances proteasome activity and promotes aggressiveness in acute myeloid leukemia

Hynes-Smith, R. W.; Swenson, S. A.; Vahle, H.; Wittorf, K. J.; Caplan, M.; Amador, C.; Hyde, R. K.; Buckley, S. M.

10.1101/732198 — cancer biology — Posted on 2019-08-12

2189 Single-Cell RNA-Seq Reveals Naïve B cells Associated with Better Prognosis of HCC

He, J.; Lin, Y.; Su, X.; Luo, Q.; Ghazanfar, S.; Yang, J. Y. H.; Han, Z.-g.

10.1101/731935 — cancer biology — Posted on 2019-08-12

2190 Musculoskeletal fat imaging and quantification by high-resolution metabolite cycling magnetic resonance spectroscopic imaging at 3 T: A fast method to generate separate distribution maps of lipid components

Alhulail, A. A.; Patterson, D. A.; Xia, P.; Zhou, X.; Lin, C.; Thomas, M. A.; Dydak, U.; Emir, U. E.

10.1101/732016 — biochemistry — Posted on 2019-08-12

2191 Spatial and temporal transcriptomics reveal microglia-astroglia crosstalk in the amyloid-β plaque cell niche of Alzheimer’s disease

Chen, W.-T.; Lu, A.; Craessaerts, K.; Pavie, B.; Sala Frigerio, C.; Mancuso, R.; Qian, X.; Lalakova, J.; Kuhnemund, M.; Voytyuk, I.; Wolfs, L.; Snellinx, A.; Munck, S.; Jurek, A.; Navarro, J. F.; Saido, T. C.; Lundeberg, J.; Fiers, M.; De Strooper, B.

10.1101/719930 — neuroscience — Posted on 2019-08-12

2192 Spatiotemporal refinement of signal flow through association cortex during learning

Gilad, A.; Helmchen, F.

10.1101/732115 — neuroscience — Posted on 2019-08-12

2193 vH+-ATPase-induced intracellular acidification is critical to glucose-stimulated insulin secretion

Naik, A. R.; Formosa, B. J.; Pulvender, R. G.; Liyanaarachchi, A. G.; Jena, B. P.

10.1101/732222 — cell biology — Posted on 2019-08-12

2194 Piezo1 channel activates ADAM10 sheddase to regulate Notch1 and gene expression

Beech, D. J.; Caolo, V.; Debant, M.; Endesh, N.; Futers, S.; Lichtenstein, L.; Parsonage, G.; Jones, E. A. V.

10.1101/732370 — cell biology — Posted on 2019-08-12

2195 openTSNE: a modular Python library for t-SNE dimensionality reduction and embedding

Policar, P. G.; Strazar, M.; Zupan, B.

10.1101/731877 — bioinformatics — Posted on 2019-08-12

2196 Methodological Challenges in Translational Drug Response Modeling in Cancer

Schätzle, L.-K.; Hadizadeh Esfahani, A.; Schuppert, A. A.

10.1101/731836 — bioinformatics — Posted on 2019-08-12

2197 The structure of Mycobacterium tuberculosis heme-degrading protein, MhuD, in complex with product

Chao, A.; Burley, K.; Sieminski, P.; Mobley, D. L.; Goulding, C.

10.1101/731950 — biochemistry — Posted on 2019-08-12

2198 LIBR Methamphetamine and Opioid Cue Database (LIBR MOCD): Development and Validation

Ekhtiari, H.; Kuplicki, R.; Pruthi, A.; Paulus, M. P.

10.1101/731331 — neuroscience — Posted on 2019-08-12

2199 Anatomical development of the cerebellothalamic tract in embryonic mice

Dumas, D.; Gornati, S. V.; Adolfs, Y.; Shimogori, T.; Pasterkamp, R. J.; Hoebeek, F. E.

10.1101/731968 — neuroscience — Posted on 2019-08-12

2200 Relationships between landscape structure and the prevalence of two tick-borne infectious agents, Anaplasma phagocytophilum and Borrelia burgdorferi sensu lato, in small mammal communities

Perez, G.; Bastian, S.; Chastagner, A.; Agoulon, A.; Rantier, Y.; Vourc'h, G.; Plantard, O.; Butet, A.

10.1101/718403 — ecology — Posted on 2019-08-12

2201 Neural dynamics of the attentional blink revealed by encoding orientation selectivity during rapid visual presentation

Tang, M. F.; Ford, L.; Arabzadeh, E.; Enns, J. T.; Visser, T. A. W.; Mattingley, J. B.

10.1101/595355 — neuroscience — Posted on 2019-08-11

2202 Elevated serum aspartate aminotransferase levels concomitant with normal alanine aminotransferase levels in older low body weight people: Preliminary findings from a community-based epidemiological study

Shibata, M.; Nakajima, K.

10.1101/528034 — epidemiology — Posted on 2019-08-11

2203 mRNA compartmentalisation spatially orients tissue morphogenesis

Costa, G.; Bradbury, J.; Tarannum, N.; Herbert, S.

10.1101/374850 — developmental biology — Posted on 2019-08-11

2204 Measurement and self-operating computer of the leukocyte continuum as a fixed space-time continuum in inflammation

Nonomura, Y.

10.1101/543611 — biophysics — Posted on 2019-08-11

2205 Discovery of small-molecule inhibitors targeting the ribosomal peptidyl transferase center (PTC) of M. tuberculosis

Tam, B.; Sherf, D.; Cohen, S.; Eisdorfer, S. A.; Perez, M.; Soffer, A.; Vilenchik, D.; Akabayov, S. R.; Wagner, G.; Akabayov, B.

10.1101/604777 — biochemistry — Posted on 2019-08-11

2206 NMDA receptors enhance the fidelity of synaptic integration

Li, C.; Baker, A. L.; Gulledge, A. T.

10.1101/566117 — neuroscience — Posted on 2019-08-11

2207 Addition of Genetics to Quantitative MRI Facilitates Earlier Prediction of Dementia: A Non-invasive Alternative to Amyloid Measures

Schenker-Ahmed, N. M.; Bulsara, N.; Yang, L.; Huang, L.; Iranmehr, A.; Wu, J.; Graff, A. M.; Dadakova, T.; Chung, H.-K.; Tkach, D.; Shomorony, I.; Shah, N.; Garst, P.; Heister, R.; Bureeva, S.; Delport, W.; Karow, D. S.; Brewer, J. B.; Swisher, C. L.

10.1101/731661 — bioinformatics — Posted on 2019-08-11

2208 Chemistry of cation hydration and conduction in a skeletal muscle ryanodine receptor

Wu, Z.; Liu, C.; Yu, H.; Kang, D.; Li, X.; Zhang, L.; Fan, C.; Li, X.-Z.; Song, C.; Yin, C.-C.; Mao, Y.

10.1101/732172 — biochemistry — Posted on 2019-08-11

2209 CrowdGO: a wisdom of the crowd-based Gene Ontology annotation tool

Reijnders, M. J.

10.1101/731596 — bioinformatics — Posted on 2019-08-11

2210 Design Principles of Lambda’s Lysis/lysogeny Decision vis-a-vis Multiplicity of Infection

Wadhwa, D.

10.1101/146308 — systems biology — Posted on 2019-08-11

2211 Determining Temporal Stability in Dominance Hierarchies

Vilette, C.; Bonnell, T.; Henzi, S. P.; Barrett, L.

10.1101/692384 — animal behavior and cognition — Posted on 2019-08-11

2212 Chemotaxis and swarming in differentiated HL60 neutrophil-like cells

Babatunde, K. A.; Wang, X.; Hopke, A.; Mantel, P.-Y.; Irimia, D.

10.1101/714345 — cell biology — Posted on 2019-08-11

2213 Spatial arrangement drastically changes the neural representation of multiple visual stimuli that compete in more than one feature domain

Wiesner, S.; Baumgart, I.; Huang, X.

10.1101/692541 — neuroscience — Posted on 2019-08-11

2214 Instructor-learner brain coupling discriminates between instructional approaches and predicts learning

Pan, Y.; Dikker, S.; Goldstein, P.; Zhu, Y.; Yang, C.; Hu, Y.

10.1101/704239 — neuroscience — Posted on 2019-08-11

2215 Jointly inferring the dynamics of population size and sampling intensity from molecular sequences

Parag, K. V.; du Plessis, L.; Pybus, O. G.

10.1101/686378 — genetics — Posted on 2019-08-11

2216 ORP5 Transfers Phosphatidylserine To Mitochondria And Regulates Mitochondrial Calcium Uptake At Endoplasmic Reticulum - Mitochondria Contact Sites

Rochin, L.; Sauvanet, C.; Jaaskelainen, E.; Houcine, A.; Kivela, A.; Ma, X.; Marien, E.; Dehairs, J.; Neveu, J.; Le Bars, R.; Swinnen, J.; Bernard, D.; Tareste, D.; Olkkonen, V.; Giordano, F.

10.1101/695577 — cell biology — Posted on 2019-08-11

2217 A cytomegalovirus immunevasin triggers integrated stress response-dependent reorganization of the endoplasmic reticulum.

Zhang, H.; Read, C.; Nguyen, C. C.; Siddiquey, M. N. A.; Shang, C.; Hall, C. M.; von Einem, J.; Kamil, J. P.

10.1101/641068 — microbiology — Posted on 2019-08-11

2218 Environmental DNA (eDNA) metabarcoding of pond water as a tool to survey conservation and management priority mammals

Harper, L. R.; Lawson Handley, L.; Carpenter, A. I.; Ghazali, M.; Di Muri, C.; Macgregor, C. J.; Logan, T. W.; Law, A.; Breithaupt, T.; Read, D. S.; McDevitt, A.; Hänfling, B.

10.1101/546218 — molecular biology — Posted on 2019-08-11

2219 Defining the molecular state of human cancer

Sahu, B.; Pihlajamaa, P.; Zhang, K.; Palin, K.; Ahonen, S.; Cervera, A.; Ristimaki, A.; Aaltonen, L.; Hautaniemi, S.; Taipale, J.

10.1101/525600 — cancer biology — Posted on 2019-08-11

2220 Exploratory behavior is associated with microhabitat and evolutionary radiation in Lake Malawi cichlids

Johnson, Z. V.; Moore, E. C.; Wong, R. Y.; Godwin, J. R.; Streelman, J. T.; Roberts, R. B.

10.1101/525378 — animal behavior and cognition — Posted on 2019-08-11

2221 MIR3607 regulates cerebral cortex development via activation of Wnt/βCat signaling

Chinnappa, K.; Marquez-Galera, A.; Prieto-Colomina, A.; Nomura, Y.; Cardenas, A.; Lopez-Atalaya, J. P.; Borrell, V.

10.1101/729939 — developmental biology — Posted on 2019-08-11

2222 Sperm chemotaxis is driven by the slope of the chemoattractant concentration field

Ramirez-Gomez, H. V.; Jimenez-Sabinina, V.; Tuval, I.; Velazquez-Perez, M.; Beltran, C.; Carneiro, J.; Wood, C.; Darszon, A.; Guerrero, A.

10.1101/148650 — biophysics — Posted on 2019-08-11

2223 In situ growth of anammox bacteria in subseafloor sediments

Zhao, R.; Mogollon, J. M.; Abby, S. S.; Schleper, C.; Biddle, J. F.; Roerdink, D.; Thorseth, I. H.; Jorgensen, S. L.

10.1101/729350 — microbiology — Posted on 2019-08-11

2224 A highly contiguous reference genome for Northern Bobwhite (Colinus virginianus)

Salter, J. F.; Johnson, O.; Stafford, N. J.; Herrin, W. F.; Schilling, D.; Cedotal, C.; Brumfield, R. T.; Faircloth, B.

10.1101/729863 — genomics — Posted on 2019-08-11

2225 Improvising at Rest: Differentiating Jazz and Classical Music Training with Resting State Functional Connectivity

Belden, A. G.; Zeng, H.; Przysinda, E.; Anteraper, S. A.; Whitfield-Gabrieli, S.; Loui, P.

10.1101/732073 — neuroscience — Posted on 2019-08-11

2226 Recruitment of mRNAs to P granules by gelation with intrinsically-disordered proteins

Lee, C.-Y. S.; Putnam, A.; Lu, T.; He, S.; Ouyang, J. P. T.; Seydoux, G.

10.1101/732057 — cell biology — Posted on 2019-08-11

2227 The role of post-Golgi transport pathways and sorting motifs in the plasmodesmal targeting of the movement protein (MP) of Ourmia melon virus (OuMV)

Ozber, N.; Margaria, P.; Anderson, C. T.; Turina, M.; Rosa, C.

10.1101/724716 — plant biology — Posted on 2019-08-11

2228 Structure-activity relationship studies of three novel 4-aminopyridine K+ channel blockers

Rodriguez-Rangel, S.; Bravin, A. D.; Ramos-Torres, K. M.; Brugarolas, P.; Sanchez-Rodriguez, J. E.

10.1101/731943 — biophysics — Posted on 2019-08-11

2229 GLI transcriptional repression regulates tissue-specific enhancer activity in response to Hedgehog signaling

Lex, R. K.; Ji, Z.; Falkenstein, K. N.; Zhou, W.; Henry, J. L.; Ji, H.; Vokes, S. A.

10.1101/732024 — developmental biology — Posted on 2019-08-11

2230 Intra-Nuclear Tensile Strain Mediates Reorganization of Epigenetically Marked Chromatin During Cardiac Development and Disease

Seelbinder, B.; Ghosh, S.; Berman, A. G.; Schneider, S. E.; Goergen, C. J.; Calve, S.; Neu, C. P.

10.1101/455600 — cell biology — Posted on 2019-08-11

2231 DLDG1, the Arabidopsis Homolog of the Cyanobacterial H+-Extrusion Protein, Regulates Non-Photochemical Quenching in Chloroplasts

Harada, K.; Arizono, T.; Sato, R.; Trinh, M. D. L.; Hashimoto, A.; Kono, M.; Tsujii, M.; Uozumi, N.; Takaichi, S.; MASUDA, S.

10.1101/731653 — plant biology — Posted on 2019-08-10

2232 Silencing epigenetic writer DOT1L attenuates intimal hyperplasia

Huang, Y.; Urabe, G.; Zhang, M.; Li, J.; Wang, B.; Kent, K. C.; Guo, L.

10.1101/730572 — pathology — Posted on 2019-08-10

2233 Remote Activation of a Latent Epitope in an Autoantigen Decoded with Simulated B-Factors

Pang, Y.-P.; Casal Moura, M.; Thompson, G. E.; Nelson, D. R.; Hummel, A. M.; Jenne, D. E.; Emerling, D.; Volkmuth, W.; Robinson, W. H.; Specks, U.

10.1101/559963 — immunology — Posted on 2019-08-10

2234 Chemotaxis and swarming in differentiated HL60 neutrophil-like cells

Babatunde, K. A.; Wang, X.; Hopke, A.; Mantel, P.-Y.; Irimia, D.

10.1101/714345 — cell biology — Posted on 2019-08-10

2235 Machine learning based detection of genetic and drug class variant impact on functionally conserved protein binding dynamics

Babbitt, G. A.; Fokoue, E. P.; Evans, J. R.; Diller, K. I.; Adams, L. E.

10.1101/724211 — biophysics — Posted on 2019-08-10

2236 Augmenting Protein Network Embeddings with Sequence Information

Kane, H.; Coulibali, M.; Abdalla, A.; Ajanoh, P.

10.1101/730481 — bioinformatics — Posted on 2019-08-10

2237 Nitrogen Fertilisers Shape The Composition And Predicted Functions Of The Microbiota Of Field-Grown Tomato Plants

Caradonia, F.; Ronga, D.; Catellani, M.; Giaretta Azevedo, C. V.; Alegria Terrazas, R.; Robertson-Albertyn, S.; Francia, E.; Bulgarelli, D.

10.1101/672162 — plant biology — Posted on 2019-08-10

2238 A scalar Poincare map for struggling in Xenopus tadpoles

Olenik, M.; Houghton, C.

10.1101/540971 — neuroscience — Posted on 2019-08-10

2239 The plakin domain of C. elegans VAB-10/plectin acts as a hub in a mechanotransduction pathway to promote morphogenesis

Labouesse, M.; Suman, S. K.; Daday, C.; Ferraro, T.; Vuong-Brender, T. T. K.; Tak, S.; Quintin, S.; Robin, F.; Gräter, F.

10.1101/681072 — developmental biology — Posted on 2019-08-10

2240 Optogenetics reveals Cdc42 local activation by scaffold-mediated positive feedback and Ras GTPase

Lamas, I.; Merlini, L.; Vjestica, A.; Vincenzetti, V.; Martin, S.

10.1101/710855 — cell biology — Posted on 2019-08-10

2241 Predicting the short-term success of human influenza A variants with machine learning

Hayati, M.; Biller, P.; Colijn, C.

10.1101/609248 — evolutionary biology — Posted on 2019-08-10

2242 Metagenomic analysis of soil samples collected from estuarine mangroves of Arabian Sea reveals rich microbiota and high numbers of sulphate reducing bacteria accompanied with methanogen bacteria.

Paingankar, M. S.; Deobagkar, D. D.

10.1101/731810 — microbiology — Posted on 2019-08-10

2243 Targeted cell ablation in zebrafish using optogenetic transcriptional control

Mruk, K.; Ciepla, P.; Piza, P.; Alnaqib, M.; Chen, J. K.

10.1101/730507 — developmental biology — Posted on 2019-08-10

2244 DLDG1, the Arabidopsis Homolog of the Cyanobacterial H+-Extrusion Protein, Regulates Non-Photochemical Quenching in Chloroplasts

Harada, K.; Arizono, T.; Sato, R.; Trinh, M. D. L.; Hashimoto, A.; Kono, M.; Tsujii, M.; Uozumi, N.; Takaichi, S.; MASUDA, S.

10.1101/731653 — plant biology — Posted on 2019-08-10

2245 Whole-brain MEG decoding of symbolic and non-symbolic number stimuli reveals primarily format-dependent representations

Bankson, B. B.; Janini, D.; Baker, C. I.

10.1101/731687 — neuroscience — Posted on 2019-08-10

2246 Molecular responses to freshwater limitation in the mangrove tree Avicennia germinans (Acanthaceae)

Vargas Cruz, M.; Maruyama Mori, G.; Oh, D.-H.; Dassanayake, M.; Imaculada Zucchi, M.; Silva Oliveira, R.; de Souza, A. P.

10.1101/731760 — evolutionary biology — Posted on 2019-08-10

2247 Wind drives temporal variation in pollinator visitation in a fragmented tropical forest

Crall, J. D.; Brokaw, J.; Gagliardi, S. F.; Mendenhall, C. D.; Pierce, N. E.; Combes, S. A.

10.1101/731273 — ecology — Posted on 2019-08-10

2248 A Combinatorial MAP Code Dictates Polarized Microtubule Transport

Monroy, B. Y.; Tan, T. C.; Oclaman, J. M.; Han, J. S.; Simo, S.; Nowakowski, D. W.; McKenney, R. J.; Ori-McKenney, K. M.

10.1101/731604 — biophysics — Posted on 2019-08-10

2249 The circulating lipidome is largely defined by sex descriptors in the GOLDN, GeneBank and the ADNI studies

Barupal, D. K.; Zhang, Y.; Fan, S.; Hazen, S. L.; Tang, W. H. W.; Cajka, T.; Irvin, M. R.; Arnett, D. K.; Kind, T.; Kaddurah-Daouk, R.; Fiehn, O.

10.1101/731448 — biochemistry — Posted on 2019-08-10

2250 Estimates of locus coeruleus function with functional magnetic resonance imaging are influenced by localization approaches and the use of multi-echo data

Turker, H. B.; Riley, E.; Luh, W.-M.; Colcombe, S. J.; Swallow, K. M.

10.1101/731620 — neuroscience — Posted on 2019-08-10

2251 Dynamic coupling of cochlear inner hair cell intrinsic Ca2+ action potentials to Ca2+ signaling of non-sensory cells

Ceriani, F.; Sedlacek, M.; Hendry, A.; Kachar, B.; Marcotti, W.; Mammano, F.

10.1101/731851 — developmental biology — Posted on 2019-08-10

2252 PIWI-piRNA pathway-mediated transposable element repression in Hydra somatic stem cells

Teefy, B. B.; Siebert, S.; Cazet, J. F.; Lin, H.; Juliano, C. E.

10.1101/731695 — molecular biology — Posted on 2019-08-10

2253 Myristate as a carbon and energy source for the asymbiotic growth of the arbuscular mycorrhizal fungus Rhizophagus irregularis

Sugiura, Y.; Akiyama, R.; Tanaka, S.; Yano, K.; Kameoka, H.; Kawaguchi, M.; Akiyama, K.; Saito, K.

10.1101/731489 — microbiology — Posted on 2019-08-10

2254 Efficient multiplex genome editing using CRISPR-Mb3Cas12a in mice

Wang, Z.; Wang, Y.; Wang, S.; Gorzalski, A. J.; McSwiggin, H.; Yu, T.; Castaneda-Garcia, K.; Zheng, H.; Yan, W.

10.1101/731646 — genomics — Posted on 2019-08-10

2255 An integrative view of the regulatory and transcriptional landscapes in mouse hematopoiesis

Xiang, G.; Keller, C. A.; Heuston, E. F.; Giardine, B. M.; An, L.; Wixom, A. Q.; Miller, A.; Cockburn, A.; Lichtenberg, J.; Gottgens, B.; Li, Q.; Bodine, D.; Mahony, S.; Taylor, J.; Blobel, G. A.; Weiss, M. J.; Cheng, Y.; Yue, F.; Hughes, J.; Higgs, D. R.; Zhang, Y.; Hardison, R. C.

10.1101/731729 — genomics — Posted on 2019-08-10

2256 CrowdGO: a wisdom of the crowd-based Gene Ontology annotation tool

Reijnders, M. J.

10.1101/731596 — bioinformatics — Posted on 2019-08-10

2257 IRG1 and iNOS act redundantly with other interferon gamma induced factors to restrict intracellular replication of Legionella pneumophila.

Price, J. V.; Russo, D.; Ji, D. X.; Chavez, R. A.; DiPeso, L.; Lee, A. Y.-F.; Coers, J.; Vance, R.

10.1101/731182 — immunology — Posted on 2019-08-10

2258 Among family variation in survival and gene expression uncovers adaptive genetic variation in a threatened fish

Harder, A. M.; Willoughby, J. R.; Ardren, W. R.; Christie, M. R.

10.1101/731497 — evolutionary biology — Posted on 2019-08-10

2259 High-Accuracy Protein Structures By Combining Machine-Learning With Physics-Based Refinement

Heo, L.; Feig, M.

10.1101/731521 — biophysics — Posted on 2019-08-10

2260 Structural insights into the mechanism of the human soluble guanylate cyclase

Kang, Y.; Liu, R.; Wu, J.-X.; Chen, L.

10.1101/731679 — biochemistry — Posted on 2019-08-10

2261 A Causal Network Analysis of Neuromodulation in the Cortico-Subcortical Limbic Network

Qiao, S.; Brown, K. A.; Sedillo, J. I.; Ferrentino, B.; Pesaran, B.

10.1101/731547 — neuroscience — Posted on 2019-08-10

2262 Distinct and shared contributions of diagnosis and symptom domains to cognitive performance in severe mental illness

Service, S. K.; Munoz Umanes, M.; Vargas Upegui, C.; Castano Ramirez, M.; Agudelo Arango, L. G.; Diaz-Zuluaga, A. M.; Melo Esepjo, J.; Lopez, M. C.; Palacio, J. D.; Sanchez Ruiz, S.; Valencia, J.; Teshiba, T.; Espinoza, A.; Olde Loohuis, L.; Brodey, B.; Sabatti, C.; Moore, T.; Port, A.; Escobar, J. I.; Reus, V. I.; Lopez Jaramillo, C.; Gur, R.; Bearden, C. E.; Freimer, N. B.

10.1101/731265 — neuroscience — Posted on 2019-08-10

2263 Computational evidence for hierarchically-structured reinforcement learning in humans

Eckstein, M. K.; Collins, A. G. E.

10.1101/731752 — neuroscience — Posted on 2019-08-10

2264 Separable codes for read-out of mouse primary visual cortex across attentional states

Wilson, A. M.; Beck, J. M.; Glickfeld, L. L.

10.1101/731398 — neuroscience — Posted on 2019-08-10

2265 Somatic Mutations in Vascular Malformations of Hereditary Hemorrhagic Telangiectasia Result in Biallelic Loss of ENG or ACVRL1

Snellings, D. A.; Gallione, C. J.; Clark, D. S.; Vozoris, N. T.; Faughnan, M. E.; Marchuk, D. A.

10.1101/731588 — genetics — Posted on 2019-08-10

2266 A Game of Thrones at Human Centromeres II. A new molecular/evolutionary model

Rice, W. R.

10.1101/731471 — evolutionary biology — Posted on 2019-08-10

2267 scDoc: Correcting Drop-out Events in Single-cell RNA-seq Data

Ran, D.; Zhang, S.; Lytal, N.; An, L.

10.1101/731638 — bioinformatics — Posted on 2019-08-10

2268 Flux-based hierarchical organization of Escherichia coli’s metabolic network

Robaina Estevez, S.; Nikoloski, Z.

10.1101/731356 — systems biology — Posted on 2019-08-10

2269 Assessing the motivational effects of ethanol in mice using a discrete-trial current-intensity intracranial self-stimulation procedure

Barkley-Levenson, A. M.; Der-Avakian, A.; Palmer, A. A.

10.1101/731612 — neuroscience — Posted on 2019-08-10

2270 Impact of Candida auris infection in a neutropenic murine model

Torres, S. R.; Pichowicz, A.; Torres-Velez, F. J.; Song, R.; Singh, N.; Lasek-Nesselquist, E.; De Jesus, M.

10.1101/731281 — microbiology — Posted on 2019-08-10

2271 Microbial diversity of the Arabian Sea in the Oxygen minimum zones by metagenomics approach

Paingankar, M. S.; Ahire, K.; Mishra, P.; Rajpathak, S.; Deobagkar, D. D.

10.1101/731828 — microbiology — Posted on 2019-08-10

2272 Norovirus replication in human intestinal epithelial cells is restricted by the interferon-induced JAK/STAT signalling pathway and RNA Polymerase II mediated transcriptional responses.

Hosmillo, M. T.; Chaudhry, Y.; Nayak, K.; Sorgeloos, F.; Koo, B.-K.; Merenda, A.; Lillestol, R.; Drumright, L.; Zilbauer, M.; Goodfellow, I. G.

10.1101/731802 — microbiology — Posted on 2019-08-10

2273 Development and evaluation of a rapid on-site water pathogen detection system for water quality monitoring

Chia, J. Y.; Tay, Y. P.; Poh, D.; Tay, B. H.; Koh, E.; Teo, J.; Yap, J.; Lim, M.; Soh, L. T.; Lee, Y. K.; Lee, C.-L. K.

10.1101/731778 — microbiology — Posted on 2019-08-10

2274 High-throughput experimental evolution using barcoded strains of Saccharomyces cerevisiae

Fasanello, V. J.; Botero, C. A.; Liu, P.; Fay, J. C.

10.1101/731349 — evolutionary biology — Posted on 2019-08-10

2275 xQTLImp: efficient and accurate xQTL summary statistics imputation

Wang, T.; Yin, Q.; Liu, Y.; Chen, J.; Wang, Y.; Peng, J.

10.1101/726182 — bioinformatics — Posted on 2019-08-10

2276 Quantifying and engineering probiotic bacterial adhesion to mucus

Mays, Z. J. S.; Chappell, T. C.; Nair, N. U.

10.1101/731505 — bioengineering — Posted on 2019-08-10

2277 Laccase-mediated catalyzed fluorescent reporter deposition for live cell imaging

Cisneros, B. T.; Devaraj, N. K.

10.1101/731539 — biochemistry — Posted on 2019-08-10

2278 A Game of Thrones at Human Centromeres I. Multifarious structure necessitates a new molecular/evolutionary model

Rice, W. R.

10.1101/731430 — evolutionary biology — Posted on 2019-08-10

2279 DeepBCR: Deep learning framework for cancer-type classification and binding affinity estimation using B cell receptor repertoires.

Hu, X.; Liu, X. S.

10.1101/731158 — bioinformatics — Posted on 2019-08-10

2280 Prebiotically Plausible ‘Patching’ of RNA Backbone Cleavage Through a 3′-5′ Pyrophosphate Linkage

Wright, T. H.; Giurgiu, C.; Radakovic, A.; O'Flaherty, D. K.; Zhou, L.; Szostak, J. W.

10.1101/731125 — biochemistry — Posted on 2019-08-10

2281 A Sense of Place: Transcriptomics Identifies Environmental Signatures in Cabernet Sauvignon Berry Skins in the Late Stages of Ripening.

Cramer, G. R.; Cochetel, N.; Ghan, R.; Destrac-Irvine, A.; Delrot, S.

10.1101/729236 — plant biology — Posted on 2019-08-10

2282 Persistent trajectory-modulated hippocampal neurons support memory-guided navigation

Kinsky, N. R.; Mau, W.; Sullivan, D. W.; Levy, S. J.; Ruesch, E. A.; Hasselmo, M. E.

10.1101/676593 — neuroscience — Posted on 2019-08-10

2283 Chemotaxis and swarming in differentiated HL60 neutrophil-like cells

Babatunde, K. A.; Wang, X.; Hopke, A.; Mantel, P.-Y.; Irimia, D.

10.1101/714345 — cell biology — Posted on 2019-08-10

2284 An Addressable Microfluidics device for Noninvasive Manipulation of Cells and Chemicals within Live Cultures

Tong, A.; Pham, L. Q.; Shah, V.; Naik, A.; Abatemarco, P.; Voronov, R.

10.1101/688424 — bioengineering — Posted on 2019-08-10

2285 Dopaminergic control of postnatal mammalian spinal network function is predominantly inhibitory.

Sharples, S. A.; Burma, N.; Borowska-Fielding, J.; Kwok, C. H. T.; Eaton, S. E. A.; Baker, G.; Jean-Xavier, C.; Zhang, Y.; Trang, T.; Whelan, P.

10.1101/715326 — neuroscience — Posted on 2019-08-10

2286 Human body prediction of size and shape: a hormonal framework

van Vugt, J.

10.1101/722777 — cell biology — Posted on 2019-08-10

2287 A deep learning approach to pattern recognition for short DNA sequences

Busia, A.; Dahl, G. E.; Fannjiang, C.; Alexander, D. H.; Dorfman, E.; Poplin, R.; McLean, C. Y.; Chang, P.-C.; DePristo, M. A.

10.1101/353474 — bioinformatics — Posted on 2019-08-10

2288 Personalized deep learning of individual immunopeptidomes to identify neoantigens for cancer vaccines

Tran, N. H.; Qiao, R.; Xin, L.; Chen, X.; Shan, B.; Li, M.

10.1101/620468 — bioinformatics — Posted on 2019-08-10

2289 3’-5’ crosstalk contributes to transcriptional bursting

Cavallaro, M.; Walsh, M. D.; Jones, M.; Teahan, J.; Tiberi, S.; Finkenstadt, B.; Hebenstreit, D.

10.1101/514174 — systems biology — Posted on 2019-08-10

2290 Time-varying nodal measures with temporal community structure: a cautionary note to avoid misquantification

Thompson, W. H.; Kastrati, G.; Finc, K.; Wright, J.; Shine, J. M.; Poldrack, R. A.

10.1101/659508 — neuroscience — Posted on 2019-08-10

2291 Educational attainment causally impacts drinking behaviors and risk for alcohol dependence: results from a two-sample Mendelian randomization study in ~ 780,000 study participants

Rosoff, D. B.; Clarke, T.-K.; Adams, M. J.; McIntosh, A. M.; Davey Smith, G.; Jung, J.; Lohoff, F. W.

10.1101/557595 — epidemiology — Posted on 2019-08-10

2292 Antibody Targeting of B7-H4 Enhances the Immune Response in Urothelial Carcinoma

Podojil, J. R.; Glaser, A. P.; Baker, D.; Courtois, E. T.; Fantini, D.; Yu, Y.; Eaton, V.; Sivajothi, S.; Robson, P.; Miller, S.; Meeks, J. J.

10.1101/730564 — cancer biology — Posted on 2019-08-10

2293 Tensor decomposition-Based Unsupervised Feature Extraction Applied to Single-Cell Gene Expression Analysis

Taguchi, Y.-h.; Turki, T.

10.1101/684225 — bioinformatics — Posted on 2019-08-10

2294 Inference of CRISPR Edits from Sanger Trace Data

Hsiau, T.; Conant, D.; Maures, T.; Waite, K.; Yang, J.; Kelso, R.; Holden, K.; Enzmann, B. L.; Stoner, R.

10.1101/251082 — bioinformatics — Posted on 2019-08-10

2295 Myosin motor domains carrying mutations implicated in early or late onset Hypertrophic Cardiomyopathy have similar properties

Vera, C. D.; Johnson, C. A.; Walklate, J.; Adhikari, A.; Svicevic, M.; Mijailovich, S.; Combs, A.; Langer, S. J.; Ruppel, K. M.; Spudich, J. A.; Geeves, M. A.; LEINWAND, L. A.

10.1101/622738 — biophysics — Posted on 2019-08-10

2296 Sparse reduced-rank regression for exploratory visualization of multimodal data sets

Kobak, D.; Bernaerts, Y.; Weis, M. A.; Scala, F.; Tolias, A.; Berens, P.

10.1101/302208 — bioinformatics — Posted on 2019-08-10

2297 Direct current stimulation boosts Hebbian plasticity in vitro

Kronberg, G.; Rahman, A.; Sharma, M.; Bikson, M.; Parra, L. C.

10.1101/562322 — neuroscience — Posted on 2019-08-09

2298 Cytokinetic abscission dynamics in neuroepithelial stem cells during brain development

McNeely, K. C.; Little, J. N.; Dwyer, N. D.

10.1101/529164 — developmental biology — Posted on 2019-08-09

2299 Voltage-dependent activation of Rac1 by Nav1.5 channels promotes cell migration

Yang, M.; James, A. D.; Suman, R.; Kasprowicz, R.; Nelson, M.; O'Toole, P.; Brackenbury, W. J.

10.1101/597088 — cell biology — Posted on 2019-08-09

2300 The effect of overnight consolidation in the perceptual learning of non-native tonal contrasts

Qin, Z.; Zhang, C.

10.1101/731042 — neuroscience — Posted on 2019-08-09

2301 Immunomodulatory activity of Momordica charantia L. (Cucurbitaceae) leaf diethyl ether and methanol extracts on Salmonella typhi infected mice and LPS-induced phagocytic activities of macrophages and neutrophils

Mahamat, O.; Flora, H.; Christopher, T.; Albert, K.

10.1101/731034 — pharmacology and toxicology — Posted on 2019-08-09

2302 Orbit Image Analysis: An open-source whole slide image analysis tool

Stritt, M.; Stalder, A. K.; Vezzali, E.

10.1101/731000 — pathology — Posted on 2019-08-09

2303 SAPH-ire TFx: A Machine Learning Recommendation Method and Webtool for the Prediction of Functional Post-Translational Modifications

English, N.; Torres, M. P.

10.1101/731026 — bioinformatics — Posted on 2019-08-09

2304 Inferring reaction network structure from single-cell, multiplex data, using toric systems theory

Wang, S.; Lin, J.-r.; Sontag, E. D.; Sorger, P. K.

10.1101/731018 — systems biology — Posted on 2019-08-09

2305 3D mapping of host-parasite-microbiome interactions reveals metabolic determinants of tissue tropism and disease tolerance in Chagas disease

Hossain, E.; Khanam, S.; Wu, C.; Lostracco-Johnson, S.; Thomas, D.; Katemauswa, M.; Gosmanov, C.; Li, D.; Woelfel-Monsivais, C.; Sankaranarayanan, K.; McCall, L.-I.

10.1101/727917 — microbiology — Posted on 2019-08-09

2306 CRISPR-Cas systems in the plant pathogen Xanthomonas spp. and their impact on genome plasticity

Martins, P. M. M.; Xavier, A. S.; Takita, M. A.; Alfenas-Zerbini, P.; de Souza, A. A.

10.1101/731166 — microbiology — Posted on 2019-08-09

2307 Global transcriptomic profiling of the bone marrow stromal microenvironment during postnatal development, aging and inflammation

Helbling, P. M.; Pineiro-Yanez, E.; Gerosa, R.; Boettcher, S.; Al-Shahrour, F.; Manz, M. G.; Nombela-Arrieta, C.

10.1101/730457 — immunology — Posted on 2019-08-09

2308 Metabolic Control of Viral Infection through PPAR-α Regulation of STING Signaling

Tao, L.; Lowe, A.; Wang, G.; Dozmorov, I.; Chang, T.; Yan, N.; Reese, T. A.

10.1101/731208 — immunology — Posted on 2019-08-09

2309 Escherichia coli Metabolite Profiling Leads to the Development of an RNA Interference Strain for Caenorhabditis elegans

Neve, I. A. A.; Sowa, J. N.; Lin, C.-C. J.; Sivaramakrishnan, P.; Ye, Y.; Han, L.; Herman, C.; Wang, M. C.

10.1101/731315 — genetics — Posted on 2019-08-09

2310 Occurrence and stability of hetero-hexamer associations formed by β-carboxysome CcmK shell components

Garcia-Alles, L. F.; Root, K.; Maveyraud, L.; Aubry, N.; Lesniewska, E.; Mourey, L.; Zenobi, R.; Truan, G.

10.1101/730861 — biochemistry — Posted on 2019-08-09

2311 Patterns of linkage disequilibrium reveal genome architecture in chum salmon

McKinney, G. J.; McPhee, M. V.; Pascal, C.; Seeb, J. E.; Seeb, L. W.

10.1101/729574 — genomics — Posted on 2019-08-09

2312 Anomalous phylogenetic behavior of ribosomal proteins in metagenome assembled genomes

Garg, S. G.; Kapust, N.; Lin, W.; Nelson-Sathi, S.; Tria, F. D. K.; Gould, S. B.; Fan, L.; Zhu, R.; Zhang, C.; Martin, W. F.

10.1101/731091 — evolutionary biology — Posted on 2019-08-09

2313 Fibroblast growth factor receptor facilitates recurrence of minimal residual disease following trastuzumab emtansine therapy

Akhand, S. S.; Purdy, S. C.; Liu, Z.; Anderson, J.; Willey, C.; Wendt, M.

10.1101/731299 — cancer biology — Posted on 2019-08-09

2314 Engineered cartilage from human chondrocytes with homozygous knockout of cell cycle inhibitor p21

D'Costa, S.; Rich, M. J.; Diekman, B. O.

10.1101/731216 — bioengineering — Posted on 2019-08-09

2315 Predicting metabolism during growth by osmotic cell expansion

Shameer, S.; Ratcliffe, R. G.; Sweetlove, L. J.

10.1101/731232 — plant biology — Posted on 2019-08-09

2316 WAPL maintains dynamic cohesin to preserve lineage specific distal gene regulation

Liu, N. Q.; Maresca, M.; van den Brand, T.; Braccioli, L.; Schijns, M. M. G. A.; Teunissen, H.; Bruneau, B. G.; Nora, E. P.; de Wit, E.

10.1101/731141 — genomics — Posted on 2019-08-09

2317 Hierarchical Ensembles of Intrinsically Disordered Proteins at Atomic Resolution in Molecular Dynamics Simulations

Pietrek, L. M.; Stelzl, L. S.; Hummer, G.

10.1101/731133 — biophysics — Posted on 2019-08-09

2318 Simultaneous optimization of donor and acceptor substrate specificity for transketolase by a small but smart library

Yu, H.; Lopez, R. I. H.; Steadman, D.; Mendez-Sanchez, D.; Higson, S.; Cazares-Korner, A.; Ward, J. M.; Hailes, H. C.; Dalby, P. A.

10.1101/719906 — bioengineering — Posted on 2019-08-09

2319 Multiplexed, bioorthogonal labeling of multicomponent, biomolecular complexes using genomically encoded, non-canonical amino acids

Desai, B. J.; Gonzalez, R. L.

10.1101/730465 — bioengineering — Posted on 2019-08-09

2320 Is Vergence an Absolute Distance Cue?

Linton, P.

10.1101/731109 — neuroscience — Posted on 2019-08-09

2321 Tradeoffs in optimal control capture patterns of human sensorimotor control and adaptation

Cluff, T.; Crevecoeur, F.; Scott, S. H.

10.1101/730713 — neuroscience — Posted on 2019-08-09

2322 Post-EMT: Cadherin-11 mediates cancer hijacking fibroblasts

Kang, W.; Fan, Y.; Du, Y.; Tonkova, E. A.; Hsu, Y.-H.; Tan, K. V.; Alexander, S.; Wong, B. S.; Yang, H.; Luo, J.; Yao, K.; Yang, J.; Hu, X.; Liu, T.; Gan, Y.; Zhang, J.; Zhao, J. J.; Konstantopoulos, K.; Friedl, P.; Khong, P. L.; Lu, A.; Hung, M.-C.; Brenner, M. B.; Segall, J. E.; Gu, Z.

10.1101/729491 — cancer biology — Posted on 2019-08-09

2323 Using Machine Learning and Gene Nonhomology Features to Predict Gene Ontology

Dai, X.; Xu, Z.; Liang, Z.; Tu, X.; Zhong, S.; Schnable, J. C.; Li, P.

10.1101/730473 — bioinformatics — Posted on 2019-08-09

2324 Meta-Analysis of Transcriptomic Variation in T cell Populations Reveals Novel Signatures of Gene Expression and Splicing

Radens, C. M.; Blake, D.; Jewell, P.; Barash, Y.; Lynch, K. W.

10.1101/727362 — immunology — Posted on 2019-08-09

2325 Extremely fast and accurate open modification spectral library searching of high-resolution mass spectra using feature hashing and graphics processing units

Bittremieux, W.; Laukens, K.; Noble, W. S.

10.1101/627497 — bioinformatics — Posted on 2019-08-09

2326 Surface proteome dynamics during neuronal development and synaptic plasticity

van Oostrum, M.; Campbell, B.; Mueller, M.; Pedrioli, P. G. A.; Tyagarajan, S. K.; Wollscheid, B.

10.1101/731083 — neuroscience — Posted on 2019-08-09

2327 Freezing and water availability structure the evolutionary diversity of trees across the Americas

Segovia, R. A.; Pennington, T.; Baker, T.; Coelho de Souza, F.; Neves, D.; Davis, C. C.; Armesto, J. J.; Olivera-Filho, A.; Dexter, K.

10.1101/728717 — ecology — Posted on 2019-08-09

2328 Antibody Targeting of B7-H4 Enhances the Immune Response in Urothelial Carcinoma

Podojil, J. R.; Glaser, A.; Baker, D.; Fantini, D.; Yu, Y.; Eaton, V.; Sivajothi, S.; Robson, P.; Miller, S.; Meeks, J. J.

10.1101/730564 — cancer biology — Posted on 2019-08-09

2329 A nutritional memory impairs survival, transcriptional and metabolic response to dietary restriction in old mice

Hahn, O.; Drews, L. F.; Nguyen, A.; Tatsuta, T.; Gkioni, L.; Hendrich, O.; Zhang, Q.; Langer, T.; Pletcher, S.; Wakelam, M. J. O.; Beyer, A.; Groenke, S.; Partridge, L.

10.1101/730853 — physiology — Posted on 2019-08-09

2330 Proteome-wide characterization and biomarker identification of intracranial aneurysm

Sharma, T.; Datta, K. K.; Kumar, M.; Dey, G.; Khan, A. A.; Mangalaparthi, K. K.; Saharan, P.; C., S.; Aggarwal, A.; Singla, N.; Ghosh, S.; Rawat, A.; Dhandapani, S.; Salunke, P.; Chhabra, R.; Singh, D.; Takkar, A.; Gupta, S. K.; Prasad, T. S. K.; Gowda, H.; Pandey, A.; Bhagat, H.

10.1101/725473 — neuroscience — Posted on 2019-08-09

2331 Low rank mechanisms underlying flexible visual representations

Ruff, D. A.; Xue, C.; Kramer, L. E.; Baqai, F.; Cohen, M. R.

10.1101/730978 — neuroscience — Posted on 2019-08-09

2332 U1 snRNP regulates cancer cell migration and invasion

Oh, J.-M.; Venters, C. C.; Di, C.; Pinto, A. M.; Wan, L.; Younis, I.; Cai, Z.; Arai, C.; So, B. R.; Dreyfuss, G.

10.1101/730515 — molecular biology — Posted on 2019-08-09

2333 Predator prey and the third beneficiary

Baig, U. I.; Pund, A.; Holkar, K.; Watve, M.

10.1101/730895 — microbiology — Posted on 2019-08-09

2334 Quantification of malaria antigens PfHRP2 and pLDH by quantitative suspension array technology in whole blood, dried blood spot and plasma

Martianez-Vendrell, X.; Jimenez, A.; Vasquez, A.; Campillo, A.; Incardona, S.; Gonzalez, R.; Gamboa, D.; Torres, K.; Oyibo, W.; Faye, B.; Macete, E.; Menendez, C.; Mayor, A.

10.1101/730499 — microbiology — Posted on 2019-08-09

2335 Conidial melanin of the human pathogenic fungus Aspergillus fumigatus disrupts cell autonomous defenses in amoebae

Ferling, I.; Dunn, J. D.; Ferling, A.; Soldati, T.; Hillmann, F.

10.1101/730879 — microbiology — Posted on 2019-08-09

2336 Efficient CRISPR/Cas9 gene ablation in uncultured naive mouse T cells for in vivo studies

Nüssing, S.; House, I. G.; Kearney, C. J.; Vervoort, S. J.; Beavis, P. A.; Oliaro, J.; Johnstone, R. W.; Trapani, J. A.; Parish, I. A.

10.1101/730812 — immunology — Posted on 2019-08-09

2337 Natural genetic variation underlying tiller development in barley (Hordeum vulgare L)

Haaning, A. M.; Smith, K. P.; Brown-Guedira, G.; Chao, S.; Tyagi, P.; Muehlbauer, G. J.

10.1101/730945 — genetics — Posted on 2019-08-09

2338 Inland-coastal bifurcation of southern East Asians revealed by Hmong-Mien genomic history

Xia, Z.-Y.; Yan, S.; Wang, C.-C.; Zheng, H.-X.; Zhang, F.; Liu, Y.-C.; Yu, G.; Yu, B.-X.; Shu, L.-L.; Jin, L.

10.1101/730903 — genetics — Posted on 2019-08-09

2339 Can endogenous fluctuations persist in high-diversity ecosystems?

Roy, F.; Barbier, M.; Biroli, G.; Bunin, G.

10.1101/730820 — ecology — Posted on 2019-08-09

2340 Principles for engineering microbial composition and ecosystem functioning

Albright, M. B.; Gallegos_Graves, L. V.; Sevanto, S.; Dunbar, J.

10.1101/730556 — ecology — Posted on 2019-08-09

2341 STAT3 and GR cooperate to drive basal-like triple negative breast cancer gene expression and proliferation.

Conway, M. E.; McDaniel, J. M.; Graham, J. M.; Guillen, K. P.; Oliver, P. G.; Parker, S. L.; Yue, P.; Turkson, J.; Buchsbaum, D. J.; Welm, B. E.; Myers, R. M.; Varley, K. E.

10.1101/730606 — cancer biology — Posted on 2019-08-09

2342 A mechanical memory of pancreatic cancer cells

Carnevale, I.; Capula, M.; Giovannetti, E.; Schmidt, T.; Coppola, S.

10.1101/730960 — biophysics — Posted on 2019-08-09

2343 Quantifying genetic effects on disease mediated by assayed gene expression levels

Yao, D. W.; O'Connor, L. J.; Price, A. L.; Gusev, A.

10.1101/730549 — genetics — Posted on 2019-08-09

2344 Mechanical reinforcement of protein L from Finegoldia magna points to a new bind-and-search mechanism

Dahal, N. R.; Nowitzke, J.; Eis, A.; Popa, I.

10.1101/731059 — biophysics — Posted on 2019-08-09

2345 Thinking like a naturalist: enhancing computer vision of citizen science images by harnessing contextual data

Terry, J. C.; Roy, H. E.; August, T. A.

10.1101/730887 — ecology — Posted on 2019-08-09

2346 Population genomics of the widespread African savannah trees Afzelia africana and Afzelia quanzensis (Caesalpinioideae, Fabaceae) reveals no significant past fragmentation of their distribution ranges

Donkpegan, A. S. L.; Pineiro, R.; Heuertz, M.; Duminil, J.; Dainou, K.; Doucet, J.-L.; Hardy, O. J.

10.1101/730911 — plant biology — Posted on 2019-08-09

2347 Silencing epigenetic writer DOT1L attenuates intimal hyperplasia

Huang, Y.; Urabe, G.; Zhang, M.; Li, J.; Wang, B.; Kent, K. C.; Guo, L.

10.1101/730572 — pathology — Posted on 2019-08-09

2348 Characterization of neurogenic niches in the telencephalon of juvenile and adult sharks

Docampo-Seara, A.; Pereira-Guldris, S.; Sanchez-Farias, N.; Mazan, S.; Rodriguez, M. A.; Candal, E.

10.1101/730721 — neuroscience — Posted on 2019-08-09

2349 Top-down control of water intake by the endocannabinoid system

Zhao, Z.; Soria-Gomez, E.; Varilh, M.; Julio-Kalajzic, F.; Cannich, A.; Castiglione, A.; Vanhoutte, L.; Duveau, A.; Zizzari, P.; Beyeler, A.; Cota, D.; Bellocchio, L.; Busquets-Garcia, A.; Marsicano, G.

10.1101/729970 — neuroscience — Posted on 2019-08-09

2350 Multivoxel codes for representing and integrating acoustic features in human cortex

Sohoglu, E.; Kumar, S.; Chait, M.; Griffiths, T.

10.1101/730234 — neuroscience — Posted on 2019-08-09

2351 Structure-function analysis reveals a DNA polymerization-independent role for mitochondrial DNA polymerase IC in African trypanosomes.

Miller, J. C.; Delzell, S. B.; Concepcion-Acevedo, J.; Boucher, M. J.; Klingbeil, M. M.

10.1101/730523 — microbiology — Posted on 2019-08-09

2352 Transferrin binding protein B and Transferrin binding protein A2 expand the transferrin recognition range of Histophilus somni

Pogoutse, A. K.; Moraes, T.

10.1101/730739 — microbiology — Posted on 2019-08-09

2353 Cross-continental biogeography of the common bean rhizosphere microbiome reveals a persistent core membership

Stopnisek, N.; Shade, A.

10.1101/727461 — microbiology — Posted on 2019-08-09

2354 Circadian period-heterogeneity is governed by clonal inheritance of variable gene expression

Nikhil, K. L.; Korge, S.; Kramer, A.

10.1101/731075 — cell biology — Posted on 2019-08-09

2355 Genomic profiling of PML bodies reveals transcriptional regulation by PML bodies through the DNMT3A exclusion

Kurihara, M.; Kato, K.; Sanbo, C.; Ohkawa, Y.; Shigenobu, S.; Fuchigami, T.; Miyanari, Y.

10.1101/729483 — cell biology — Posted on 2019-08-09

2356 Endosomal explosion induced by hypertonicity enhances chitosan transfection

Wang, S.; Jin, S.; Li, G.; Sun, R.; Shu, Q.; Wu, S.

10.1101/730648 — biophysics — Posted on 2019-08-09

2357 Augmenting Protein Network Embeddings with Sequence Information

Kane, H.; Coulibali, M.; Abdalla, A.; Ajanoh, P.

10.1101/730481 — bioinformatics — Posted on 2019-08-09

2358 A low-cost, open source, self-contained bacterial EVolutionary biorEactor (EVE)

Gopalakrishnan, V.; Krishnan, N. P.; McClure, E.; Pelesko, J.; Guo, D.; Williamson, D. F. K.; Webster, N.; Ecker, D.; Nichol, D.; Scott, J. G.

10.1101/729434 — bioengineering — Posted on 2019-08-09

2359 Glucagon-like peptide-1 receptor agonist, exendin-4, reduces reinstatement of heroin seeking behavior in rats

Douton, J. E.; Augusto, C.; Stoltzfus, B. A.; Salli, N.; Vrana, K. E.; Grigson, P. S.

10.1101/730408 — animal behavior and cognition — Posted on 2019-08-09

2360 Exploration-related strategy mediates negative coupling between decision-making performance and psychiatric symptoms

Suzuki, S.; Yamashita, Y.; Katahira, K.

10.1101/730614 — neuroscience — Posted on 2019-08-09

2361 Psychotic-like experiences, polygenic risk scores for schizophrenia and structural properties of the salience, default mode and central-executive networks in healthy participants from UK Biobank

Alloza, C.; Blesa-Cabez, M.; Bastin, M. E.; Madole, J. W.; Buchanan, C. R.; Janssen, J.; Gibson, J.; Deary, I. J.; Tucker-Drob, E. M.; Whalley, H. C.; Arango, C.; McIntosh, A. M.; Cox, S. R.; Lawrie, S. M.

10.1101/729921 — neuroscience — Posted on 2019-08-09

2362 Diagnostic value of galactomannan in bronchoalveolar lavage fluid for chronic respiratory disease with pulmonary aspergillosis

Lai, G.; Zeng, C.; Mo, J.; Song, W.; Xu, p.

10.1101/730770 — microbiology — Posted on 2019-08-09

2363 Does microbiome-associated disease affect the inter-subject heterogeneity of human microbiome?

Ma, Z.; Li, L.

10.1101/730747 — microbiology — Posted on 2019-08-09

2364 Vitamins D3 and D2 have marked but different global effects on gene expression in a rat oligodendrocyte precursor cell line

Mengozzi, M.; Hesketh, A.; Bucca, G.; Ghezzi, P.; Smith, C. P.

10.1101/730168 — genomics — Posted on 2019-08-09

2365 A LAMP assay for the rapid and robust assessment of Wolbachia infection in Aedes aegypti under field and laboratory conditions

Jasper, M. E.; Yang, Q.; Ross, P. A.; Endersby-Harshman, N.; Bell, N.; Hoffmann, A. A.

10.1101/730689 — genetics — Posted on 2019-08-09

2366 In vivo lineage conversion of vertebrate muscle into early endoderm-like cells

Campbell, C.; Lancman, J. J.; Espin-Palazon, R.; Matalonga, J.; He, J.; Graves, A.; Zeng, X.-X. I.; Huisken, J.; Traver, D.; Dong, P. D. S.

10.1101/722967 — developmental biology — Posted on 2019-08-09

2367 Pyntheon: A Functional Analysis Framework for Protein Modifications and Mutations of 83 Model Organisms

Arslan, A.

10.1101/725846 — bioinformatics — Posted on 2019-08-09

2368 MisMatch Negativity-study showing pre-lexical sensitivity to both primary Final Accent and secondary Initial Accent in French

te Rietmolen, N.; El Yagoubi, R.; Astesano, C.

10.1101/727776 — neuroscience — Posted on 2019-08-09

2369 Rapid Sensorimotor Reinforcement in the Olfactory Striatum

Millman, D. J.; Murthy, V. N.

10.1101/730697 — neuroscience — Posted on 2019-08-09

2370 Reclassification of Pterulaceae Corner (Basidiomycota: Agaricales) introducing the ant-associated genus Myrmecopterula gen. nov., Phaeopterula Henn. and the corticioid Radulomycetaceae fam. nov.

Leal-Dutra, C. A.; griffith, g. w.; Neves, M. A.; McLaughlin, D. J.; McLaughlin, E. G.; Clasen, L. A.; Dentinger, B. T. M.

10.1101/718809 — microbiology — Posted on 2019-08-09

2371 Chagas disease serological test performance in United States blood donor specimens

Whitman, J. D.; Bulman, C. A.; Gunderson, E. L.; Irish, A. M.; Townsend, R. L.; Stramer, S.; Sakanari, J.; Bern, C.

10.1101/730754 — microbiology — Posted on 2019-08-09

2372 A Dysbiotic Gut Microbiome Suppresses Antibody Mediated-Protection Against Vibrio cholerae

Macbeth, J.; Hsiao, A.

10.1101/730796 — microbiology — Posted on 2019-08-09

2373 Multi-tissue analysis reveals short tandem repeats as ubiquitous regulators of gene expression and complex traits

Feupe Fotsing, S.; Margoliash, J.; Wang, C.; Saini, S.; Yanicky, R.; Shleizer-Burko, S.; Goren, A.; Gymrek, M.

10.1101/495226 — genomics — Posted on 2019-08-09

2374 Histone ChIP-Seq identifies differential enhancer usage during chondrogenesis as critical for defining cell-type specificity

Cheung, K.; Barter, M. J.; Falk, J.; Proctor, C.; Reynard, L. N.; Young, D. A.

10.1101/727370 — genomics — Posted on 2019-08-09

2375 Assessment of Polygenic Architecture and Risk Prediction based on Common Variants Across Fourteen Cancers

Zhang, Y.; Wilcox, A. N.; Zhang, H.; Choudhury, P. P.; Easton, D. F.; Milne, R. L.; Simard, J.; Hall, P.; Michailidou, K.; Dennis, J.; Schmidt, M. K.; Chang-Claude, J.; Gharahkhani, P.; Whiteman, D.; Campbell, P. T.; Hoffmeister, M.; Jenkins, M.; Peters, U.; Hsu, L.; Gruber, S. B.; Casey, G.; Schmit, S. L.; O'Mara, T. A.; Spurdle, A. B.; Thompson, D. J.; Tomlinson, I.; Vivo, I. D.; Landi, M. T.; Law, M. H.; Iles, M. M.; Demenais, F.; Kumar, R.; MacGregor, S.; Bishop, D. T.; Ward, S. V.; Bondy, M. L.; Houlston, R.; Wiencke, J. K.; Melin, B.; Barnholtz-Sloan, J.; Kinnersley, B.; Wrensch, M. R.;

10.1101/723825 — genetics — Posted on 2019-08-09

2376 In situ Fucosylation for Modulating Wnt Signaling in Live Cells

Hong, S.; Feng, L.; Jiang, H.; Hou, X.; Guo, P.; Marlow, F.; Stanley, P.; Wu, P.

10.1101/726612 — biochemistry — Posted on 2019-08-09

2377 Effect of user adaptation on prosthetic finger control with an intuitive myoelectric decoder

Krasoulis, A.; Vijayakumar, S.; Nazarpour, K.

10.1101/585703 — bioengineering — Posted on 2019-08-09

2378 Mycobacterium riyadhense clinical isolates provide insights into ancestry and adaptive evolution in tuberculosis

10.1101/728923 — evolutionary biology — Posted on 2019-08-09

2379 An evolutionary conservation based benchmark of seven methods detecting nycthemeral rhythms in gene expression shows that only strong rhythmic signals are reliably detected.

Laloum, D.; Robinson-Rechavi, M.

10.1101/730937 — bioinformatics — Posted on 2019-08-09

2380 Progressive alignment with Cactus: a multiple-genome aligner for the thousand-genome era

10.1101/730531 — genomics — Posted on 2019-08-09

2381 Coordination of tissue cell polarity by auxin transport and signaling

Verna, C.; Ravichandran, S. J.; Sawchuk, M. G.; Linh, N. M.; Scarpella, E.

10.1101/680090 — plant biology — Posted on 2019-08-09

2382 Is adaptation limited by mutation? A timescale dependent effect of genetic diversity on the adaptive substitution rate in animals.

Rousselle, M.; Simion, P.; Tilak, M.-K.; Figuet, E.; Nabholz, B.; Galtier, N.

10.1101/643619 — evolutionary biology — Posted on 2019-08-09

2383 Evaluation of Reproducible and Transparent Research Practices in Pulmonology

Smith, C.; Nolan, J.; Tritz, D.; Heavener, T.; Pelton, J.; Cook, K.; Vassar, M.

10.1101/726505 — scientific communication and education — Posted on 2019-08-09

2384 Multiclass Disease Classification from Microbial Whole-Community Metagenomes using Graph Convolutional Neural Networks.

Khan, S.; Kelly, L.

10.1101/726901 — bioinformatics — Posted on 2019-08-09

2385 Escape mutations circumvent a tradeoff between resistance to beta-lactams and a beta-lactamase inhibitor

Russ, D.; Glaser, F.; Shaer Tamar, E.; Yelin, I.; Zampaloni, C.; Haldimann, A.; Kishony, R.

10.1101/730994 — microbiology — Posted on 2019-08-09

2386 Microbial genomes retrieved from High Arctic lake sediments encode for adaptation to cold and oligotrophic environments

Ruuskanen, M. O.; Colby, G.; St. Pierre, K.; St. Louis, V.; Aris-Brosou, S.; Poulain, A.

10.1101/724781 — microbiology — Posted on 2019-08-09

2387 Orientation processing by synaptic integration across first-order tactile neurons

Hay, E.; Pruszynski, J. A.

10.1101/396705 — neuroscience — Posted on 2019-08-09

2388 Upscaling surveillance of tick-borne pathogens in the French Caribbean islands

Gondard, M.; Delannoy, S.; Pinarello, V.; Aprelon, R.; Devillers, E.; Galon, C.; Pradel, J.; Vayssier-Taussat, M.; Albina, E.; Moutailler, S.

10.1101/532457 — epidemiology — Posted on 2019-08-09

2389 The regulatory function of dIno80 correlates with its DNA binding activity

Jain, S.; Maini, J.; Narang, A.; Maiti, S.; Brahmachari, V.

10.1101/519959 — developmental biology — Posted on 2019-08-09

2390 A novel role for the tumor suppressor gene ITF2 in lung tumorigenesis through the action of Wnt signaling pathway

Pernia, O.; Sastre-Perona, A.; Rodriguez-Antolin, C.; Garcia-Guede, A.; Palomares-Bralo, M.; Rosas, R.; Sanchez-Cabrero, D.; Rodriguez, C.; Martin-Arenas, R.; Pulido, V.; de Castro, J.; Santisteban, P.; Vera, O.; Ibanez de Caceres, I.

10.1101/517169 — cancer biology — Posted on 2019-08-09

2391 Inferring putative transmission clusters with Phydelity

Han, A.; Parker, E.; Maurer-Stroh, S.; Russell, C.

10.1101/477653 — bioinformatics — Posted on 2019-08-09

2392 Simultaneous multi-area recordings suggest that attention improves performance by reshaping stimulus representations

Ruff, D. A.; Cohen, M. R.

10.1101/372888 — neuroscience — Posted on 2019-08-09

2393 Small circRNAs with self-cleaving ribozymes are frequently expressed in metazoan transcriptomes

Cervera, A.; De la Pena, M.

10.1101/721605 — genomics — Posted on 2019-08-09

2394 A biophysical model of striatal microcircuits suggests theta-rhythmically interleaved gamma and beta oscillations mediate periodicity in motor control

Chartove, J. A. K.; McCarthy, M. M.; Pittman-Polletta, B. R.; Kopell, N. J.

10.1101/725416 — neuroscience — Posted on 2019-08-09

2395 Neuroblast sensory quiescence depends of vascular cytoneme contacts and sensory neuronal differentiation requires initiation of blood flow

Taberner, L.; Banon, A.; Alsina, B.

10.1101/667519 — developmental biology — Posted on 2019-08-09

2396 Action Potential Propagation and Synchronisation inMyelinated Axons

Schmidt, H.; Knösche, T.

10.1101/599746 — neuroscience — Posted on 2019-08-09

2397 CD29 marks superior cytotoxic human CD8+ T cells

Nicolet, B. P.; Guislain, A.; van Alphen, F. P. J.; Gomez-Eerland, R.; Schumacher, T. N. M.; van den Biggelaar, M.; Wolkers, M.

10.1101/562512 — immunology — Posted on 2019-08-09

2398 Niche complementarity between pollinators increases community-level plant reproductive success

Magrach, A.; Molina, F. P.; Bartomeus, I.

10.1101/629931 — ecology — Posted on 2019-08-09

2399 Modulation of β-catenin levels is critical for cranial neural crest patterning and dispersal into first pharyngeal arch

Javali, A.; Lakshmanan, V.; Palakodeti, D.; Sambasivan, R.

10.1101/726299 — developmental biology — Posted on 2019-08-09

2400 Non-oncology drugs are a source of previously unappreciated anti-cancer activity

Corsello, S. M.; Nagari, R. T.; Spangler, R. D.; Rossen, J.; Kocak, M.; Bryan, J. G.; Humeidi, R.; Peck, D.; Wu, X.; Tang, A. A.; Wang, V. M.; Bender, S. A.; Lemire, E.; Narayan, R.; Montgomery, P.; Ben-David, U.; Chen, Y.; Rees, M. G.; Lyons, N. J.; McFarland, J. M.; Wong, B. T.; Wang, L.; Dumont, N.; O'Hearn, P. J.; Stefan, E.; Doench, J. G.; Greulich, H.; Meyerson, M.; Vazquez, F.; Subramanian, A.; Roth, J. A.; Bittker, J. A.; Boehm, J. S.; Mader, C. C.; Tsherniak, A.; Golub, T. R.

10.1101/730119 — cancer biology — Posted on 2019-08-09

2401 Maximizing binary interactome mapping with a minimal number of assays

Choi, S. G.; Olivet, J.; Cassonnet, P.; Vidalain, P.-O.; Luck, K.; Lambourne, L.; Spirohn, K.; Lemmens, I.; Dos Santos, M.; Demeret, C.; Jones, L.; Rangarajan, S.; Bian, W.; Coutant, E. P.; Janin, Y. L.; van der Werf, S.; Trepte, P.; Wanker, E. E.; De Las Rivas, J.; Tavernier, J.; Twizere, J.-C.; Hao, T.; Hill, D. E.; Vidal, M.; Calderwood, M. A.; Jacob, Y.

10.1101/530790 — systems biology — Posted on 2019-08-09

2402 Haplotype-Resolved Cattle Genomes Provide Insights Into Structural Variation and Adaptation

Low, W. Y.; Tearle, R.; Liu, R.; Koren, S.; Rhie, A.; Bickhart, D. M.; Rosen, B. D.; Kronenberg, Z. N.; Kingan, S. B.; Tseng, E.; Thibaud-Nissen, F.; Martin, F. J.; Billis, K.; Ghurye, J.; Hastie, A. R.; Lee, J.; Pang, A. W.; Heaton, M. P.; Phillippy, A. M.; Hiendleder, S.; Smith, T. P.; Williams, J. L.

10.1101/720797 — genomics — Posted on 2019-08-09

2403 SIDT2 RNA transporter promotes lung and gastrointestinal tumor development

Nguyen, T.; Bieging-Rolett, K.; Putoczki, T.; Wicks, I.; Attardi, L.; Pang, K.

10.1101/724237 — cancer biology — Posted on 2019-08-09

2404 Engineering an Enzyme for Direct Electrical Monitoring of Activity

Zhang, B.; Deng, H.; Mukherjee, S.; Song, W.; Wang, X.; Lindsay, S.

10.1101/678656 — bioengineering — Posted on 2019-08-09

2405 Oxidation-induced destabilization of the fibrinogen α-domain dimer investigated by molecular dynamics simulations

Pederson, E. N.; Interlandi, G.

10.1101/452912 — biochemistry — Posted on 2019-08-09

2406 A perturbed gene network containing PI3K/AKT, RAS/ERK, WNT/β-catenin pathways in leukocytes is linked to ASD genetics and symptom severity

Gazestani, V. H.; Pramparo, T.; Nalabolu, S.; Kellman, B. P.; Murry, S.; Lopez, L.; Pierce, K.; Courchesne, E.; Lewis, N. E.

10.1101/435917 — systems biology — Posted on 2019-08-09

2407 Meta-analysis of Reward Processing in Major Depressive Disorder Reveals Distinct Abnormalities within the Reward Circuit

Ng, T. H.; Alloy, L. B.; Smith, D. V.

10.1101/332981 — neuroscience — Posted on 2019-08-09

2408 RNA-DNA hybrids support recombination-based telomere maintenance in fission yeast

Hu, Y.; Bennett, H. W.; Liu, N.; Moravec, M.; Williams, J. F.; Azzalin, C. M.; King, M. C.

10.1101/458968 — genetics — Posted on 2019-08-09

2409 Synchrony and complexity in state-related EEG networks: an application of spectral graph theory

Ghaderi, A. H.; Baltaretu, B. R.; Andevari, M. N.; Bharmauria, V.; Balci, F.

10.1101/729806 — neuroscience — Posted on 2019-08-08

2410 Alpha herpesvirus egress and spread from neurons uses constitutive secretory mechanisms independent of neuronal firing activity

Ambrosini, A. E.; Deshmukh, N.; Berry, M. J.; Enquist, L. W.; Hogue, I. B.

10.1101/729830 — microbiology — Posted on 2019-08-08

2411 E-cadherin binds glycosylated sodium-taurocholate cotransporting polypeptide to facilitate hepatitis B virus entry

Hu, Q.; Zhang, F. F.; Duan, L.; Wang, B.; Li, P.; Li, D. D.; Yang, S. J.; Zhou, L.; Chen, W. X.

10.1101/729822 — microbiology — Posted on 2019-08-08

2412 Differential detection of Entamoeba species in stool samples collected from children in District Swat, Khyber Pakhtunkhwa Pakistan

Khan, M. I.; Shams, S.; Khan, A.; Akbar, A.; Muhammad, I.; Ullah, A.; Inam, M.; Ali, A.

10.1101/729798 — microbiology — Posted on 2019-08-08

2413 Effects of different dietary NFC/NDF on rumen microbiomes of Karakul sheep based on Three Generations of Full-length Amplifiers sequencing

Pu, X.; Guo, X.; Jiang, C.; Liu, J.; Zhang, X.; Zhang, S.; Cheng, L.; Shan, A.

10.1101/729780 — microbiology — Posted on 2019-08-08

2414 The role of mesotocin on social bonding in pinyon jays

Duque, J. F.; Rasmussen, T.; Rodriguez, A.; Stevens, J. R.

10.1101/599555 — animal behavior and cognition — Posted on 2019-08-08

2415 The repositioning of epigenetic probes/inhibitors identifies new anti-schistosomal lead compounds and chemotherapeutic targets

Whatley, K.; Padalino, G.; Whiteland, H.; Geyer, K.; Hulme, B.; Chalmers, I.; Forde-Thomas, J.; Ferla, S.; Brancale, A.; Hoffmann, K. F.

10.1101/729814 — zoology — Posted on 2019-08-08

2416 The concentration of heterotrophic growth substrates in culture medium is a crucial determinant of the culturability of subsurface soil microbes

Bartelme, R.; Custer, J. M.; Dupont, C.; Espinoza, J. L.; Torralba, M.; Khalili, B.; Carini, P.

10.1101/726661 — microbiology — Posted on 2019-08-08

2417 Long antiparallel open reading frames are unlikely to be encoding essential proteins in prokaryotic genomes

Moshensky, D.; Alexeevski, A.

10.1101/724807 — genomics — Posted on 2019-08-08

2418 ZIP-5/bZIP transcription factor regulation of folate metabolism is critical for aging axon regeneration

Lakhina, V.; McReynolds, M.; Grimes, D. T.; Rabinowitz, J. D.; Burdine, R. D.; Murphy, C. T.

10.1101/727719 — neuroscience — Posted on 2019-08-08

2419 Long-term dietary intervention reveals resilience of the gut microbiota despite changes in diet and weight

Fragiadakis, G. K.; Wastyk, H. C.; Robinson, J. L.; Sonnenburg, E. D.; Sonnenburg, J. L.; Gardner, C. D.

10.1101/729327 — microbiology — Posted on 2019-08-08

2420 The gastrointestinal development ‘parts list’: transcript profiling of embryonic gut development in wildtype and Ret-deficient mice

Chatterjee, S.; Nandakumar, P.; Auer, D.; Gabriel, S. B.; Chakravarti, A.

10.1101/730010 — genetics — Posted on 2019-08-08

2421 Improving protein function prediction with synthetic feature samples created by generative adversarial networks

Wan, C.; Jones, D. T.

10.1101/730143 — bioinformatics — Posted on 2019-08-08

2422 Dynamic control of cortical head-direction signal by angular velocity

Finkelstein, A.; Rouault, H.; Romani, S.; Ulanovsky, N.

10.1101/730374 — neuroscience — Posted on 2019-08-08

2423 Comprehensive Annotations of Human Herpesvirus 6A and 6B Genomes Reveal Novel and Conserved Genomic Features

Finkel, Y.; Schmiedel, D.; Tai-Schmiedel, J.; Nachshon, A.; Schwartz, M.; Mandelboim, O.; Stern-Ginossar, N.

10.1101/730028 — microbiology — Posted on 2019-08-08

2424 Relating Global and Local Connectome Changes to Dementia and Targeted Gene Expression in Alzheimer’s Disease

Elsheikh, S. S. M.; Chimusa, E. R.; Mulder, N.; Crimi, A.

10.1101/730416 — bioinformatics — Posted on 2019-08-08

2425 DNA methylation change in neurotrophic genes with aging and delirium evidenced from three independent cohorts

Saito, T.; Braun, P. R.; Daniel, S.; Jellison, S. S.; Hellman, M.; Shinozaki, E.; Lee, S.; Cho, H. R.; Yoshino, A.; Toda, H.; Shinozaki, G.

10.1101/730382 — neuroscience — Posted on 2019-08-08

2426 Human cerebrospinal fluid induce neuronal excitability changes in resected human neocortical and hippocampal brain slices

Wickham, J.; Corna, A.; Schwarz, N.; Uysal, B.; Layer, N.; Wuttke, T.; Koch, H.; Zeck, G.

10.1101/730036 — neuroscience — Posted on 2019-08-08

2427 Recovery of the gut microbiota after antibiotics depends on host diet and environmental reservoirs

Ng, K. M.; Aranda-Diaz, A.; Tropini, C.; Frankel, M. R.; Van Treuren, W. W.; O'Laughlin, C.; Merrill, B. D.; Yu, F. B.; Pruss, K. M.; Oliveira, R. A.; Higginbottom, S. K.; Neff, N. F.; Fischbach, M. A.; Xavier, K. B.; Sonnenburg, J. L.; Huang, K. C.

10.1101/717686 — microbiology — Posted on 2019-08-08

2428 Dormancy dynamics and dispersal contribute to soil microbiome resilience

Sorensen, J. W.; Shade, A.

10.1101/730283 — ecology — Posted on 2019-08-08

2429 Structural assembly of the human Miro1/2 GTPases based on the crystal structure of the N-terminal GTPase domain

Smith, K. P.; Focia, P. J.; Chakravarthy, S.; Landahl, E. C.; Klosowiak, J. L.; Rice, S. E.; Freymann, D. M.

10.1101/729251 — cell biology — Posted on 2019-08-08

2430 Reusing label functions to extract multiple types of biomedical relationships from biomedical abstracts at scale

Nicholson, D. N.; Himmelstein, D. S.; Greene, C. S.

10.1101/730085 — bioinformatics — Posted on 2019-08-08

2431 Epigenetics biomarkers of delirium: immune response, inflammatory response and cholinergic synaptic involvement evidenced by genome-wide DNA methylation analysis of delirious inpatients

Saito, T.; Toda, H.; Duncan, G. N.; Jellison, S. S.; Yu, T.; Klisares, M. J.; Daniel, S.; Andreasen, A.; Leyden, L.; Hellman, M.; Shinozaki, E.; Lee, S.; Yoshino, A.; Cho, H. R.; Shinozaki, G.

10.1101/729335 — neuroscience — Posted on 2019-08-08

2432 A mechanism for how Cdr1/Nim1 kinase promotes mitotic entry by inhibiting Wee1

Opalko, H. E.; Nasa, I.; Kettenbach, A. N.; Moseley, J. B.

10.1101/730242 — cell biology — Posted on 2019-08-08

2433 In silico analysis of CDC73 gene revealing 11 novel SNPs associated with Jaw Tumor Syndrome

Abdelmoneim, A. H.; Mohammed, A. I.; Mohammed, M. A.; Gadim, E. O.; Hamza, S. H.; Mirghani, S. A.; Mahmoud, T. A.; Hassan, M. A.

10.1101/729764 — bioinformatics — Posted on 2019-08-08

2434 Human bone marrow mesenchymal stem/stromal cell behaviour is coordinated via mechanically activated osteocyte-derived extracellular vesicles

Eichholz, K.; Woods, I.; Johnson, G.; Shen, N.; Corrigan, M.; Labour, M.-N.; Wynne, K.; Lowery, M.; O'Driscoll, L.; Hoey, D. A.

10.1101/730077 — physiology — Posted on 2019-08-08

2435 Neuroimaging contrast across the cortical hierarchy is the feature maximally linked to behavior and demographics

Han, F.; Gu, Y.; Brown, G. L.; Zhang, X.; Liu, X.

10.1101/730226 — neuroscience — Posted on 2019-08-08

2436 Serosolver: an open source tool to infer epidemiological and immunological dynamics from serological data

Hay, J. A.; Minter, A.; Ainslie, K.; Lessler, J.; Kucharski, A. J.; Riley, S.

10.1101/730069 — immunology — Posted on 2019-08-08

2437 Brain microRNA expression associated with social evolution in bees

Kapheim, K. M.; Jones, B. M.; Sovik, E.; Stolle, E.; Waterhouse, R. M.; Bloch, G.; Ben-Shahar, Y.

10.1101/730317 — genomics — Posted on 2019-08-08

2438 A widespread role for SLC transmembrane transporters in resistance to cytotoxic drugs

Girardi, E.; Cesar-Razquin, A.; Papakostas, K.; Lindinger, S.; Konecka, J.; Hemmerich, J.; Kickinger, S.; Kartnig, F.; Ingles-Prieto, A.; Fiume, G.; Ringler, A.; Lardeau, C.-H.; Kandasamy, R. K.; Kubicek, S.; Ecker, G. F.; Superti-Furga, G.

10.1101/726539 — cell biology — Posted on 2019-08-08

2439 Targeting EZH2 Increases Therapeutic Efficacy of Check-Point Blockade in Models of Prostate Cancer

Sheahan, A. V.; Morel, K. L.; Burkhart, D. L.; Baca, S. C.; Labbe, D. P.; Roehle, K.; Heckler, M.; Calagua, C.; Ye, H.; Galbo, P.; Panja, S.; Mitrofanova, A.; Hamid, A. A.; Kibel, A. S.; Choudhury, A. D.; Pomerantz, M. M.; Freedman, M. L.; Sweeney, C. J.; Dougan, S. K.; Sowalsky, A.; Loda, M.; Olson, B. M.; Ellis, L.

10.1101/730135 — cancer biology — Posted on 2019-08-08

2440 Genome-wide association analysis of age-at-onset traits using Cox mixed-effects models

He, L.; Kulminski, A.

10.1101/729285 — bioinformatics — Posted on 2019-08-08

2441 Aging of human endocrine pancreatic cell types is heterogeneous and sex-specific

Arrojo e Drigo, R.; Erikson, G.; Tyagi, S.; Capitanio, J.; Lyon, J.; Spigelman, A.; Bautista, A.; Manning Fox, J. E.; Shokhirev, M.; MacDonald, P.; Hetzer, M.

10.1101/729541 — physiology — Posted on 2019-08-08

2442 A comparison of automated and manual co-registration for magnetoencephalography

Houck, J. M.; Claus, E. D.

10.1101/711747 — neuroscience — Posted on 2019-08-08

2443 Large-scale changes to mRNA polyadenylation in temporal lobe epilepsy

Parras, A.; de Diego-Garcia, L.; Alves, M.; Beamer, E.; Conte, G.; Morgan, J.; Olla, I.; Hernandez-Santana, Y. E.; Delanty, N.; Farrell, M. A.; O'Brien, D. F.; Henshall, D. C.; Mendez, R.; Lucas, J. J.; Engel, T.

10.1101/725325 — neuroscience — Posted on 2019-08-08

2444 Mapping the living mouse brain neural architecture: strain specific patterns of brain structural and functional connectivity

Karatas, M.; Noblet, V.; Nasseef, M. T.; Bienert, T.; Reisert, M.; Hennig, J.; Yalcin, I.; Kieffer, B. L.; von Elverfeldt, D.; Harsan, L.-A.

10.1101/730366 — neuroscience — Posted on 2019-08-08

2445 A size principle for leg motor control in Drosophila

Azevedo, A. W.; Gurung, P.; Venkatasubramanian, L.; Mann, R.; Tuthill, J. C.

10.1101/730218 — neuroscience — Posted on 2019-08-08

2446 Structure of HIV-1 Env bound with the Fab of antibody PG16

Pan, J.; Peng, H.; Chen, B.; Harrison, S.

10.1101/730333 — immunology — Posted on 2019-08-08

2447 Abiotic environmental adaptation in vertebrates is characterized by functional genomic constraint

Wollenberg Valero, K.; Garcia-Porta, J.; Irisarri, I.; Feugere, L.; Bates, A.; Kirchhof, S.; Jovanovic Glavas, O.; Pafilis, P.; Samuel, S. F.; Mueller, J.; Vences, M.; Turner, A. P.; Beltran-Alvarez, P.; Storey, K. B.

10.1101/726240 — evolutionary biology — Posted on 2019-08-08

2448 Connectivity analysis of GEF/GTPase networks in living cells

Marston, D. J.; Vilela, M.; Ren, J.; Glekas, G.; Azoitei, M.; Danuser, G.; Sondek, J.; Hahn, K.

10.1101/728998 — cell biology — Posted on 2019-08-08

2449 Using a novel web application for thermodynamic characterization of Tel22 G-quadruplex unfolding

Prislan, I.; Sajko, S.; Poklar Ulrih, N.; Fuerst, L.

10.1101/730432 — biochemistry — Posted on 2019-08-08

2450 A VP2/3-derived peptide exhibits potent antiviral activity against BK and JC polyomaviruses by targeting a novel VP1 binding site

Kane, J. R.; Fong, S.; Shaul, J.; Frommlet, A.; Frank, A. O.; Knapp, M.; Bussiere, D. E.; Kim, P.; Ornelas, E.; Cuellar, C.; Abend, J. R.; Wartchow, C. A.

10.1101/720318 — microbiology — Posted on 2019-08-08

2451 Plumage redness signals mitochondrial function in the House Finch

Hill, G. E.; Hood, W. R.; Ge, Z.; Grinter, R.; Greening, C.; Johnson, J. D.; Park, N.; Taylor, H.; Andreasen, V.; Powers, M.; Justyn, N.; Parry, H.; Kavazis, A.; Zhang, Y.

10.1101/728873 — evolutionary biology — Posted on 2019-08-08

2452 Life history and dispersal timing evolve in response to metapopulation connectedness

Masier, S.; Bonte, D.

10.1101/476093 — ecology — Posted on 2019-08-08

2453 Viral expression of a SERCA2a-activating PLB mutant improves calcium cycling and synchronicity in dilated cardiomyopathic hiPSC-CMs

Stroik, D. R.; Ceholski, D. K.; Mleczko, J.; Thanel, P. F.; Bidwell, P. A.; Autry, J. M.; Cornea, R. L.; Thomas, D. D.

10.1101/699975 — biophysics — Posted on 2019-08-08

2454 Community turnover by composition and climatic affinity across scales in an alpine system

Smithers, B. V.; Oldfather, M. F.; Koontz, M. J.; Bishop, J.; Bishop, C.; Nachlinger, J.; Sheth, S. N.

10.1101/659169 — ecology — Posted on 2019-08-08

2455 StrainHub: A phylogenetic tool to construct pathogen transmission networks

de Bernardi Schneider, A.; Ford, C. T.; Hostager, R.; Williams, J.; Cioce, M.; Catalyürek, U. V.; Wertheim, J. O.; Janies, D.

10.1101/650283 — bioinformatics — Posted on 2019-08-08

2456 How well do routine molecular diagnostics detect rifampicin heteroresistance in Mycobacterium tuberculosis?

Ng, K. C. S.; Supply, P.; Cobelens, F.; Gaudin, C.; Gonzalez-Martin, J.; de Jong, B. C.; Rigouts, L.

10.1101/632851 — microbiology — Posted on 2019-08-08

2457 An unusual amino acid substitution within hummingbird cytochrome c oxidase alters a key proton-conducting channel

Dunn, C. D.; Sharma, V.

10.1101/610915 — evolutionary biology — Posted on 2019-08-08

2458 Niche complementarity between pollinators increases community-level plant reproductive success

Magrach, A.; Molina, F. P.; Bartomeus, I.

10.1101/629931 — ecology — Posted on 2019-08-08

2459 Inverse Transformed Encoding Models - a solution to the problem of correlated trial-by-trial parameter estimates in fMRI decoding

Soch, J.; Allefeld, C.; Haynes, J.-D.

10.1101/610626 — neuroscience — Posted on 2019-08-08

2460 Belowground competition can influence the evolution of root traits

Colom, S. M.; Baucom, R. S.

10.1101/553115 — evolutionary biology — Posted on 2019-08-08

2461 A Literature-Based Knowledge Graph Embedding Method for Identifying Drug Repurposing Opportunities in Rare Diseases

Sosa, D. N.; Derry, A.; Guo, M.; Wei, E.; Brinton, C.; Altman, R. B.

10.1101/727925 — bioinformatics — Posted on 2019-08-08

2462 Mechanisms of motor-independent membrane remodeling driven by dynamic microtubules

Rodriguez-Garcia, R.; Volkov, V. A.; Chen, C.-Y.; Katrukha, E. A.; Olieric, N.; Aher, A.; Grigoriev, I.; Preciado Lopez, M.; Steinmetz, M. O.; Kapitein, L. C.; Koenderink, G.; Dogterom, M.; Akhmanova, A.

10.1101/590869 — cell biology — Posted on 2019-08-08

2463 SorCS1-mediated sorting in dendrites maintains neurexin axonal surface polarization required for synaptic function

Ribeiro, L. F.; Verpoort, B.; Nys, J.; Vennekens, K. M.; Wierda, K. D.; de Wit, J.

10.1101/552695 — neuroscience — Posted on 2019-08-08

2464 Sex Solves Haldane’s Dilemma

Hickey, D.; Golding, G. B.

10.1101/582536 — evolutionary biology — Posted on 2019-08-08

2465 Unbiased estimation of linkage disequilibrium from unphased data

Ragsdale, A. P.; Gravel, S.

10.1101/557488 — genetics — Posted on 2019-08-08

2466 Transcriptional control of cardiac neural crest cells condensation and outflow tract septation by the Smad1/5/8 inhibitor Dullard

Darrigrand, J. F.; Valente, M.; Martinez, P.; Comai, G.; Petit, M.; Nishinakamura, R.; Osorio, D. S.; Ribes, V.; Cadot, B.

10.1101/548511 — developmental biology — Posted on 2019-08-08

2467 Genome-scale model of Rhodotorula toruloides metabolism

Tiukova, I. A.; Prigent, S.; Sandgren, M.; Nielsen, J.; Kerkhoven, E. J.

10.1101/528489 — systems biology — Posted on 2019-08-08

2468 Life-cycle mediated effects of urbanization on parasite communities in the estuarine fish, Fundulus heteroclitus

Alfieri, J. M.; Anderson, T. K.

10.1101/404756 — ecology — Posted on 2019-08-08

2469 Differences in Long-Chained Cuticular Hydrocarbons between Males and Gynes in Cataglyphis Desert Ants

Inbar, S.; Privman, E.

10.1101/538926 — ecology — Posted on 2019-08-08

2470 Shear-sensitive adhesion enables size-independent adhesive performance in stick insects

Labonte, D.; Struecker, M.-Y.; Birn-Jeffery, A.; Federle, W.

10.1101/724831 — zoology — Posted on 2019-08-08

2471 Domain model explains propagation dynamics and stability of K27 and K36 methylation landscapes

Alabert, C.; Loos, C.; Völker-Albert, M.; Graziano, S.; Forne, I.; Reveron-Gomez, N.; Schuh, L.; Hasenauer, J.; Marr, C.; Imhof, A.; Groth, A.

10.1101/729905 — systems biology — Posted on 2019-08-08

2472 Transcriptome Analysis of xa5-mediated Resistance to Bacterial Leaf Streak in Rice (Oryza sativa L.)

Xie, X.; Chen, Z.; Guan, H.; Zheng, Y.; Zhang, J.; Qin, M.; Wu, W.

10.1101/727115 — plant biology — Posted on 2019-08-08

2473 Evidence that alpha blocking is due to increases in system-level oscillatory damping not neuronal population desynchronisation

Liley, D. T.; Muthukumaraswamy, S. D.

10.1101/729723 — neuroscience — Posted on 2019-08-08

2474 Difference in context-dependency between orienting and defense-like responses induced by the superior colliculus

Isa, K.; Sooksawate, T.; Kobayashi, K.; Kobayashi, K.; Redgrave, P.; Isa, T.

10.1101/729772 — neuroscience — Posted on 2019-08-08

2475 Relationship between birth weight and chronic kidney disease: an integrative analysis of observational studies and causal inference through genetic approaches

Yu, X. H.; Yuan, Z.; Chen, H. M.; Yang, J. J.; Guan, F. J.; Gao, Y. X.; Zeng, P.; Huang, S. P.

10.1101/729715 — genetics — Posted on 2019-08-08

2476 Morphological and molecular evidence for range extension and first occurrence of the Japanese seahorse, Hippocampus mohnikei (Bleeker 1853) in a bay-estuarine system of Goa, central west coast of India

Sanaye, S. V.; Khandeparker, R. D.; Rayadurga, A. S.; Shivaram, M. S.; Kankonkar, H.; Narvekar, J.

10.1101/705814 — ecology — Posted on 2019-08-08

2477 Altered theta / beta frequency synchrony links abnormal anxiety-related behavior to synaptic inhibition in Neuroligin-2 knockout mice.

Cruces-Solis, H.; Babaev, O.; Ali, H.; Piletti Chatain, C.; Mykytiuk, V.; Balekoglu, N.; Wenger, S.; Krueger-Burg, D.

10.1101/726190 — neuroscience — Posted on 2019-08-08

2478 Distinct modes of cell competition are governed by entropic and energetic properties of mixed cell populations

Gradeci, D.; Bove, A.; Lowe, A.; Banerjee, S.; Charras, G.

10.1101/729731 — biophysics — Posted on 2019-08-08

2479 Characterization of evolutionarily conserved key players affecting eukaryotic flagellar motility and fertility using a moss model

Meyberg, R.; Perroud, P.-F.; Haas, F. B.; Schneider, L.; Heimerl, T.; Renzaglia, K.; Rensing, S. A.

10.1101/728691 — plant biology — Posted on 2019-08-08

2480 Decreasing human body temperature in the United States since the Industrial Revolution.

Protsiv, M.; Ley, C.; Lankester, J.; Hastie, T.; Parsonnet, J.

10.1101/729913 — physiology — Posted on 2019-08-08

2481 Converging intracortical signatures of two separated processing timescales in human early auditory cortex.

Baroni, F.; Morillon, B.; Trebuchon, A.; Liegeois-Chauvel, C.; Olasagasti, I.; Giraud, A.-L.

10.1101/730002 — neuroscience — Posted on 2019-08-08

2482 Social Perception and Interaction Database - a novel tool to study social cognitive processes with point-light displays.

Okruszek, L.; Chrustowicz, M.

10.1101/729996 — neuroscience — Posted on 2019-08-08

2483 Membrane-bounded nucleoid discovered in a cultivated bacterium of the candidate phylum ‘Atribacteria’

Katayama, T.; Nobu, M. K.; Kusada, H.; Meng, X.-Y.; Yoshioka, H.; Kamagata, Y.; Tamaki, H.

10.1101/728279 — microbiology — Posted on 2019-08-08

2484 Aging-associated changes in transcriptional elongation influence metazoan longevity.

Debes, C.; Grönke, S.; Karaley, O.; Tain, L.; Nakamura, S.; Hahn, O.; Weigelt, C.; Zirkel, A.; Sofiadis, K.; Brant, L.; Wollnik, B.; Kubacki, T.; Späth, M.; Schermer, B.; Benzing, T.; Müller, R.-U.; Papantonis, A.; Antebi, A.; Partridge, L.; Beyer, A.

10.1101/719864 — genomics — Posted on 2019-08-08

2485 A Drosophila Model of Pontocerebellar Hypoplasia Reveals a Critical Role for the RNA Exosome in Neurons

Morton, D. J.; Jalloh, B.; Kim, L.; Kremsky, I.; Le, T.; Nguyen, K.; Rounds, J. C.; Sterrett, M. C.; Brown, B.; Leung, S. W.; Fasken, M. B.; Moberg, K. H.; Corbett, A. H.

10.1101/727693 — genetics — Posted on 2019-08-08

2486 Reconstructing the invasion route of DNA transposons using extant population samples

Weilguny, L.; Vlachos, C.; Selvaraju, D.; Kofler, R.

10.1101/729889 — evolutionary biology — Posted on 2019-08-08

2487 Density-dependent effects of mortality on the optimal body size of a habitat shift: Why smaller is better despite increased mortality risk?

Chaparro Pedraza, P. C.; de Roos, A.

10.1101/728956 — ecology — Posted on 2019-08-08

2488 Darwinian properties and their trade-offs in autocatalytic RNA networks

Ameta, S.; Arsene, S.; Foulon, S.; Saudemont, B.; Clifton, B. E.; Griffiths, A. D.; Nghe, P.

10.1101/726497 — evolutionary biology — Posted on 2019-08-08

2489 A neurophysiological study of noun-adjective agreement in Arabic: The impact of animacy and diglossia on the dynamics of language processing

Idrissi, A.; Mustafawi, E.; Khwaileh, T.; Muralikrishnan, R.

10.1101/729855 — animal behavior and cognition — Posted on 2019-08-08

2490 Pyk2 in D1 receptor-expressing neurons of the nucleus accumbens modulates the acute locomotor effects of cocaine

de Pins, B.; Montalban, E.; Vanhoutte, P.; Giralt, A.; Girault, J.-A.

10.1101/729848 — neuroscience — Posted on 2019-08-08

2491 Complementary inhibitory receptive fields emerge from synaptic plasticity and create an attentional switch in sensory circuits

Agnes, E. J.; Luppi, A. I.; Vogels, T. P.

10.1101/729988 — neuroscience — Posted on 2019-08-08

2492 The association between caesarean section delivery and later life obesity in 21-24 year olds in an Urban South African birth cohort

Sogunle, E.; Masukume, G.; Nelson, G.

10.1101/728568 — scientific communication and education — Posted on 2019-08-08

2493 Synchrony and complexity in state-related EEG networks: an application of spectral graph theory

Ghaderi, A. H.; Baltaretu, B. R.; Andevari, M. N.; Bharmauria, V.; Balci, F.

10.1101/729806 — neuroscience — Posted on 2019-08-08

2494 Cas12a-based on-site and rapid nucleic acid detection of African swine fever

Bai, J.; Lin, H.; Li, H.; Zhou, Y.; Liu, J.; Zhong, G.; Wu, L.; Jiang, W.; Du, H.; Yang, J.; Xie, Q.; Huang, L.

10.1101/729590 — molecular biology — Posted on 2019-08-08

2495 Timing and original features of flagellum assembly in trypanosomes during development in the tsetse fly

Lemos, M.; Mallet, A.; Bertiaux, E.; Imbert, A.; Rotureau, B.; Bastin, P.

10.1101/728964 — microbiology — Posted on 2019-08-08

2496 Volatile molecules secreted by the wheat pathogen Parastagonospora nodorum are involved in development and phytotoxicity

Muria Gonzalez, M. J.; Yap, H. Y. Y.; Breen, S.; Mead, O.; Wang, C.; Chooi, Y.-H.; Barrow, R.; Solomon, P. S.

10.1101/729509 — microbiology — Posted on 2019-08-08

2497 Genetic and molecular mechanism for distinct clinical phenotypes conveyed by allelic truncating mutations implicated in FBN1

Wu, N.; Lin, M.; Liu, Z.; Liu, G.; Zhao, S.; Li, C.; Chen, W.; Akdemir, Z. C.; Lin, J.; Song, X.; Wang, S.; Xu, Q.; Zhao, Y.; Wang, L.; Zhang, Y.; Yan, Z.; Liu, S.; Liu, J.; Chen, Y.; Yang, X.; Sun, T.; Yang, X.-Z.; Niu, Y.; Li, X.; You, W.; Qiu, B.; Ding, C.; Liu, P.; Zhang, S.; Fonseca, C.; Posey, J. E.; Qiu, G.; Lupski, J. R.; Wu, Z.; Zhang, J.

10.1101/726646 — genetics — Posted on 2019-08-08

2498 Estrogen mediates acute elastic fibre homeostasis in skin

Saville, C. R.; Holmes, D. F.; Swift, J.; Derby, B.; Emmerson, E.; Hardman, M. J.; Sherratt, M. J.

10.1101/728865 — biophysics — Posted on 2019-08-08

2499 Ischemic Stroke Reduces Bone Perfusion and Alters Osteovascular Structure

Hanne, N. J.; Steward, A. J.; Geeroms, C.; Easter, E. D.; Thornburg, H. L.; Kerckhofs, G.; Parac-Vogt, T.; Sheng, H.; Cole, J. H.

10.1101/729632 — bioengineering — Posted on 2019-08-08

2500 AAV-mediated gene augmentation therapy restores critical functions in mutant iPSC-derived PRPF31+/- cells.

Brydon, E.; Bronstein, R.; Buskin, A.; Lako, M.; Pierce, E. A.; Fernandez-Godino, R.

10.1101/729160 — neuroscience — Posted on 2019-08-08

2501 Feedback control of a two-component signaling system by a 4Fe-4S-binding receiver domain

Stein, B. J.; Fiebig, A.; Crosson, S.

10.1101/729053 — microbiology — Posted on 2019-08-08

2502 Cryptococcus neoformans recovered from olive trees (Olea europaea) in Turkey reveal allopatry with African and South American lineages

Ergin, C.; Sengul, M.; Aksoy, L.; Dogen, A.; Sun, S.; Averette, A. F.; Cuomo, C. A.; Seyedmousavi, S.; Heitman, J.; Ilkit, M.

10.1101/729145 — genetics — Posted on 2019-08-08

2503 Case studies and mathematical models of ecological speciation. V. Adaptive divergence of whitefish in Fennoscandia.

Thibert-Plante, X.; Praebel, K.; Ostbye, K.; Kahilainen, K. K.; Amundsen, P.-A.; Gavrilets, S.

10.1101/725051 — evolutionary biology — Posted on 2019-08-08

2504 Aneuploidy and deregulated DNA damage response define haploinsufficiency in breast tissues of BRCA2 mutation carriers

Karaayvaz, M.; Silberman, R. E.; Langenbucher, A.; Saladi, S. V.; Ross, K. N.; Zarcaro, E.; Desmond, A.; Yildirim, M.; Vivekanandan, V.; Ravichandran, H.; Mylavagnanam, R.; Specht, M. C.; Ramaswamy, S.; Lawrence, M.; Amon, A.; Ellisen, L. W.

10.1101/729301 — cancer biology — Posted on 2019-08-08

2505 High Fat Diet-Induced Obesity Negatively Affects Whole Bone Bending Strength but not Cortical Structure in the Femur

Hanne, N. J.; Steward, A. J.; Cox, J. M.; Easter, E. D.; Thornburg, H. L.; Sessions, M. R.; Pinnamaraju, S. V.; Cole, J. H.

10.1101/729624 — bioengineering — Posted on 2019-08-08

2506 A role for astroglial calcium in mammalian sleep

Ingiosi, A. M.; Hayworth, C. R.; Harvey, D. O.; Singletary, K. G.; Rempe, M. J.; Wisor, J. P.; Frank, M. G.

10.1101/728931 — neuroscience — Posted on 2019-08-08

2507 Complete genome assemblies for three variants of the Wolbachia endosymbiont of Drosophila melanogaster

Basting, P. J.; Bergman, C. M.

10.1101/729061 — microbiology — Posted on 2019-08-08

2508 Vasoactive intestinal peptide confers anticipatory mucosal immunity by regulating ILC3 activity

Seillet, C.; Luong, K.; Tellier, J.; Jacquelot, N.; Shen, R. D.; Hickey, P.; Wimmer, V. C.; Whitehead, L.; Rogers, K.; Smyth, G.; Garnham, A.; Ritchie, M. E.; Belz, G.

10.1101/729400 — immunology — Posted on 2019-08-08

2509 An altered metabolism could contribute to the low activation of neonatal CD8+T cells

Sanchez-Villanueva, J. A.; Rodriguez-Jorge, O.; Ramirez-Pliego, O.; Rosas-Salgado, G.; Abou-Jaoude, W.; Hernandez, C.; Naldi, A.; Thieffry, D.; Santana, M. A.

10.1101/726885 — immunology — Posted on 2019-08-08

2510 Small molecule sequestration of amyloid-β as a drug discovery strategy for Alzheimer’s disease

Heller, G. T.; Aprile, F. A.; Michaels, T. C.; Limbocker, R.; Perni, M.; Ruggeri, F. S.; Mannini, B.; Lohr, T.; Bonomi, M.; De Simone, A.; Felli, I. C.; Pierattelli, R.; Knowles, T. P.; Dobson, C. M.; Vendruscolo, M.

10.1101/729392 — biophysics — Posted on 2019-08-08

2511 Assessment of human diploid genome assembly with 10x Linked-Reads data

Zhang, L.; Zhou, X.; Weng, Z.; Sidow, A.

10.1101/729608 — bioinformatics — Posted on 2019-08-08

2512 Allosteric activation of the nitric oxide receptor soluble guanylate cyclase mapped by cryo-electron microscopy

Horst, B. G.; Yokom, A. L.; Rosenberg, D. J.; Morris, K. L.; Hammel, M.; Hurley, J. H.; Marletta, M. A.

10.1101/729418 — biochemistry — Posted on 2019-08-08

2513 Seroprevalence of Foot and Mouth Disease Virus Infection in some Wildlife and Cattle in Bauchi State, Nigeria

Atuman, Y. J.; Kudi, C. A.; Abdu, P. A.; Okubanjo, O. O.; Ularamu, H. G.; Wungak, Y.; Abubakar, A.

10.1101/728501 — scientific communication and education — Posted on 2019-08-08

2514 The microstructure investigation of plant architecture with X-ray microscopy

Zhang, W.; Guo, T.; Chen, K.; La, T.; Bastians, P. A.; Cao, C.

10.1101/729533 — plant biology — Posted on 2019-08-08

2515 Detecting expression of mRNA of interest in microbial cells in situ

Takahashi, H.; Horio, K.; Kato, S.; Kobori, T.; Watanabe, K.; Aki, T.; Nakashimada, Y.; Okamura, Y.

10.1101/729616 — microbiology — Posted on 2019-08-08

2516 Microbial community and geochemical analyses of trans-trench sediments for understanding the roles of hadal environments

Hiraoka, S.; Hirai, M.; Matsui, Y.; Makabe, A.; Minegishi, H.; Tsuda, M.; Juliarni, J.; Rastelli, E.; Danovaro, R.; Corinaldesi, C.; Kitahashi, T.; Tasumi, E.; Nishizawa, M.; Takai, K.; Nomaki, H.; Nunoura, T.

10.1101/729517 — microbiology — Posted on 2019-08-08

2517 Absence of pathogenic Short Tandem Repeat expansions in Systemic Lupus Erythematosus disease-associated genes

Lee, A.; Cho, V.; Andrews, D.

10.1101/729467 — genomics — Posted on 2019-08-08

2518 Multiple changes underlie allelic divergence of CUP2 between Saccharomyces species.

Li, X. C.; Fay, J. C.

10.1101/728980 — evolutionary biology — Posted on 2019-08-08

2519 Gαi-derived peptide binds the μ-opioid receptor

Kosson, P.; Dyniewicz, J.; Lipinski, P. F.; Matalinska, J.; Misicka, A.; Bojarski, A. J.; Mordalski, S.

10.1101/729244 — cell biology — Posted on 2019-08-08

2520 Large-scale pan-cancer analysis reveals broad prognostic association between TGF-β ligands, not Hedgehog, and GLI1/2 expression in tumors

de Reynies, A.; Javelaud, D.; Elarouci, N.; Marsaud, V.; Gilbert, C.; Mauviel, A.

10.1101/728949 — cancer biology — Posted on 2019-08-08

2521 Towards development of a statistical framework to evaluate myotonic dystrophy type 1 mRNA biomarkers in the context of a clinical trial

Kurkiewicz, A.; Copper, A.; McIlwaine, E.; Cumming, S.; Adam, B.; Krahe, R.; Puymirat, J.; Schoser, B.; Timchenko, L.; Ashizawa, T.; Thornton, C.; Rogers, S.; McClure, J.; Monckton, D. G.

10.1101/728881 — bioinformatics — Posted on 2019-08-08

2522 Revisiting the Natural History of Pulmonary Tuberculosis: a Bayesian Estimation of Natural Recovery and Mortality rates

Ragonnet, R.; Flegg, J. A.; Brilleman, S. L.; Tiemersma, E.; Melsew, Y. A.; McBryde, E. S.; Trauer, J. M.

10.1101/729426 — bioinformatics — Posted on 2019-08-08

2523 Structural basis of nanobody-recognition of grapevine fanleaf virus and of virus resistance loss

Orlov, I.; Hemmer, C.; Ackerer, L.; Lorber, B.; Ghannam, A.; Poignavent, V.; Hleibieh, K.; Sauter, C.; Schmitt-Keichinger, C.; Belval, L.; Hily, J.-M.; Marmonier, A.; Komar, V.; Gersch, S.; Schellenberger, P.; Bron, P.; Vigne, E.; Muyldermans, S.; Lemaire, O.; Demangeat, G.; Ritzenthaler, C.; Klaholz, B.

10.1101/728907 — biochemistry — Posted on 2019-08-08

2524 The repositioning of epigenetic probes/inhibitors identifies new anti-schistosomal lead compounds and chemotherapeutic targets

Whatley, K.; Padalino, G.; Whiteland, H.; Geyer, K.; Hulme, B.; Chalmers, I.; Forde-Thomas, J.; Ferla, S.; Brancale, A.; Hoffmann, K. F.

10.1101/729814 — zoology — Posted on 2019-08-08

2525 Using Transcriptional Signatures to Find Cancer Drivers with LURE

Haan, D.; Tao, R.; Friedl, V.; Anastopoulos, I. N.; Wong, C. K.; Weinstein, A. S.; Stuart, J. M.

10.1101/727891 — systems biology — Posted on 2019-08-08

2526 Intrinsic neuronal excitability and spontaneous activity underlie cortical abnormalities upon Nr2f1/COUP-TFI deficiency

Studer, M.; del Pino, I.; Tocco, C.; Magrinelli, E.; Marcantoni, A.; Ferraguto, C.; Tomagra, G.; Alfano, C.; Leinekugel, X.; Frick, A. A.

10.1101/728402 — neuroscience — Posted on 2019-08-08

2527 Paternal Indifference and neglect in early life and Creativity: Exploring the Moderating Role of TPH1 genotype and Offspring’s Gender

Yu, Q.; Si, S.; Zhang, S.; Zhang, J.

10.1101/728600 — genetics — Posted on 2019-08-08

2528 Negative frequency-dependent selection maintains coexisting genotypes during fluctuating selection

Turner, C. B.; Buskirk, S. W.; Harris, K. B.; Cooper, V. S.

10.1101/729095 — evolutionary biology — Posted on 2019-08-08

2529 Integrated single cell and bulk multi-omics reveals heterogeneity and early changes in pathways associated with cetuximab resistance in HNSCC sensitive cell lines

Kagohara, L. T.; Zamuner, F.; Considine, M.; Allen, J.; Yegnasubramanian, S.; Gaykalova, D. A.; Fertig, E. J.

10.1101/729384 — cancer biology — Posted on 2019-08-08

2530 Assessment of the Utility of Gene Positioning Biomarkers in the Stratification of Prostate Cancers

Meaburn, K.; Misteli, T.

10.1101/728972 — cancer biology — Posted on 2019-08-08

2531 Scalable probabilistic PCA for large-scale genetic variation data

Agrawal, A.; Chiu, A. M.; Le, M.; Halperin, E.; Sankararaman, S.

10.1101/729202 — bioinformatics — Posted on 2019-08-08

2532 Development of an N-Cadherin Biofunctionalized Hydrogel to Support the Formation of Synaptically Connected Neural Networks

O'Grady, B. J.; Balotin, K. M.; Bosworth, A. M.; McClatchey, P. M.; Weinstein, R. M.; Gupta, M.; Poole, K. S.; Bellan, L. M.; Lippmann, E. S.

10.1101/729079 — bioengineering — Posted on 2019-08-08

2533 A single CRISPR base editor to induce simultaneous C-to-T and A-to-G mutations

Sakata, R. C.; Ishiguro, S.; Mori, H.; Tanaka, M.; Seki, M.; Masuyama, N.; Nishida, K.; Nishimasu, H.; Kondo, A.; Nureki, O.; Tomita, M.; Aburatani, H.; Yachie, N.

10.1101/729269 — bioengineering — Posted on 2019-08-08

2534 A Sense of Place: Transcriptomics Identifies Environmental Signatures in Cabernet Sauvignon Berry Skins in the Late Stages of Ripening.

Cramer, G. R.; Cochetel, N.; Ghan, R.; Destrac-Irvine, A.; Delrot, S.

10.1101/729236 — plant biology — Posted on 2019-08-08

2535 Modelling Osteocyte Network Formation: Healthy and Cancerous Environments

Taylor-King, J.; Buenzli, P.; Chapman, S. J.; Lynch, C. C.; Basanta, D.

10.1101/729046 — physiology — Posted on 2019-08-08

2536 Environmental influences on placental programming and offspring outcomes following maternal immune activation

Nunez Estevez, K. J.; Rondon-Ortiz, A. N.; Nguyen, J. Q. T.; Kentner, A. C.

10.1101/729228 — neuroscience — Posted on 2019-08-08

2537 A cross-species neural integration of gravity for motor optimisation

Gaveau, J.; Grospretre, S.; Angelaki, D.; Papaxanthis, C.

10.1101/728857 — neuroscience — Posted on 2019-08-08

2538 Siah2 integrates mitogenic and extracellular matrix signalslinking neuronal progenitor ciliogenesis with germinal zoneoccupancy.

Ong, T.; Trivedi, N.; Wakefield, R.; Frase, S.; Solecki, D. J.

10.1101/729152 — neuroscience — Posted on 2019-08-08

2539 Atypical neuromagnetic resting activity associated with thalamic volume and cognitive outcome in very preterm children

Nunes, A. S.; Kozhemiako, N.; Hutcheon, E.; Chau, C. M.; Ribary, U.; Grunau, R. E.; Doesburg, S. M.

10.1101/729038 — neuroscience — Posted on 2019-08-08

2540 Conserved CxnC motifs in Kaposi’s sarcoma-associated herpesvirus ORF66 are required for viral late gene expression and mediate its interaction with ORF34

Didychuk, A. L.; Castaneda, A. F.; Kushnir, L. O.; Huang, C.; Glaunsinger, B. A.

10.1101/728139 — molecular biology — Posted on 2019-08-08

2541 Differential detection of Entamoeba species in stool samples collected from children in District Swat, Khyber Pakhtunkhwa Pakistan

Khan, M. I.; Shams, S.; Khan, A.; Akbar, A.; Muhammad, I.; Ullah, A.; Inam, M.; Ali, A.

10.1101/729798 — microbiology — Posted on 2019-08-08

2542 Description and whole genome sequencing of Eikenella exigua sp. nov., isolated from brain abscess and blood.

Stormo, K. A.; Nygaard, R. M.; Bruvold, T. S.; Dimmen, G.; Lindemann, P. C.; Jordal, S.; Kommedal, O.

10.1101/728162 — microbiology — Posted on 2019-08-08

2543 Polygenic risk scores of several subtypes of epilepsies in a founder population

Moreau, C.; Rebillard, R.-M.; Wolking, S.; Michaud, J. L.; Tremblay, F.; Girard, A.; Bouchard, J.; Minassian, B.; Laprise, C.; Cossette, P.; Girard, S. L.

10.1101/728816 — genetics — Posted on 2019-08-08

2544 Six-state amino acid recoding is not an effective strategy to offset the effects of compositional heterogeneity and saturation in phylogenetic analyses

Hernandez, A. M.; Ryan, J. F.

10.1101/729103 — evolutionary biology — Posted on 2019-08-08

2545 Development and validation of a multidimensional composite pain scale for Rabbit (CANCRS) in a clinical environment

Banchi, P.; Quaranta, G.; Ricci, A.; Mauthe von Degerfeld, M.

10.1101/728543 — animal behavior and cognition — Posted on 2019-08-08

2546 Herpes simplex virus-1 pUL56 degrades GOPC to alter the plasma membrane proteome

Soh, T. K.; Davies, C. T. R.; Muenzner, J.; Connor, V.; Bouton, C. R.; Barrow, H. G.; Smith, C.; Emmott, E.; Antrobus, R.; Graham, S. C.; Weekes, M. P.; Crump, C. M.

10.1101/729343 — microbiology — Posted on 2019-08-08

2547 Guano morphology reveals ecological information in British bats

Ware, R. L.; Garrod, B.; Macdonald, H.; Allaby, R. G.

10.1101/728824 — ecology — Posted on 2019-08-08

2548 Notch signaling coordinates ommatidial rotation in the Drosophila eye via transcriptional regulation of the EGF-Receptor ligand Argos

Koca, Y.; Housden, B. E.; Gault, W. J.; Bray, S. J.; Mlodzik, M.

10.1101/728899 — developmental biology — Posted on 2019-08-08

2549 Constraints and limitations on decoding positional information: the Bicoid case-study

Tran, H.; Walczak, A. M.; Dostatni, N.

10.1101/728840 — developmental biology — Posted on 2019-08-08

2550 Oxidative stress in alpha and beta cells as a selection criterion for biocompatible biomaterials

Sthijns, M. M.; Jetten, M. J.; Mohammed, S. G.; Claessen, S. M.; de Vries, R.; Stell, A.; de Bont, D.; Engelse, M. A.; Mumcuoglu, D.; van Blitterswijk, C. A.; Dankers, P. Y.; de Koning, E. J.; van Apeldoorn, A. A.; LaPointe, V. L.

10.1101/728683 — cell biology — Posted on 2019-08-08

2551 Immortalization of human zone I hepatocytes from biliary atresia with CDK4R24C, cyclin D1, and TERT for cytochrome P450 induction testing

Nishiwaki, M.; Toyoda, M.; Oishi, Y.; Ishida, S.; Horiuchi, S.-i.; Makino, H.; Kimura, T.; Ohno, S.-i.; Ohkura, T.; Enosawa, S.; Akutsu, H.; Nakazawa, A.; Kasahara, M.; Kiyono, T.; Umezawa, A.

10.1101/729525 — cell biology — Posted on 2019-08-08

2552 Electrocutaneous stimulation to the face inhibits motor evoked potentials in the hand: face-hand interactions revealed by afferent inhibition

Ramalho, B. L.; Moly, J.; Raffin, E.; Harquel, S.; Farne, A.; Reilly, K. T.

10.1101/719708 — neuroscience — Posted on 2019-08-08

2553 Cholesterol is a strong promoter of an α-Synuclein membrane binding mode that accelerates oligomerization

Jakubec, M.; Barias, E.; Furse, S.; Govasli, M. L.; George, V.; Turcu, D.; Iashchishyn, I.; Morozova-Roche, L. A.; Halskau, O.

10.1101/725762 — molecular biology — Posted on 2019-08-08

2554 A prostaglandin F2 alpha analog protects from statin-induced myopathic changes in primary human muscle cells

Grunwald, S. A.; Popp, O.; Haafke, S.; Jedraszczak, N.; Grieben, U.; Saar, K.; Patone, G.; Kress, W.; Steinhagen-Thiessen, E.; Dittmar, G.; Spuler, S.

10.1101/271932 — molecular biology — Posted on 2019-08-08

2555 Isolation of an archaeon at the prokaryote-eukaryote interface

Imachi, H.; Nobu, M. K.; Nakahara, N.; Morono, Y.; Ogawara, M.; Takaki, Y.; Takano, Y.; Uematsu, K.; Ikuta, T.; Ito, M.; Matsui, Y.; Miyazaki, M.; Murata, K.; Saito, Y.; Sakai, S.; Song, C.; Tasumi, E.; Yamanaka, Y.; Yamaguchi, T.; Kamagata, Y.; Tamaki, H.; Takai, K.

10.1101/726976 — microbiology — Posted on 2019-08-08

2556 Single-cell gene regulatory network analysis reveals new melanoma cell states and transition trajectories during phenotype switching

Wouters, J.; Kalender Atak, Z.; Minnoye, L.; Spanier, K.; De Waegeneer, M.; Bravo Gonzalez-Blas, C.; Mauduit, D.; Davie, K.; Hulselmans, G.; Najem, A.; Dewaele, M.; Rambow, F.; Makhzami, S.; Christiaens, V.; Ceyssens, F.; Ghanem, G.; Marine, J.-C.; Poovathingal, S.; Aerts, S.

10.1101/715995 — genomics — Posted on 2019-08-08

2557 Peppy: A Virtual Reality Environment For Exploring The Principles Of Polypeptide Structure

Doak, D.; Denyer, G.; Gerrard, J.; Mackay, J.; Allison, J.

10.1101/723155 — biochemistry — Posted on 2019-08-08

2558 Neurological disorder drug discovery from gene expression with tensor decomposition

Taguchi, Y.-h.; Turki, T.

10.1101/704163 — bioinformatics — Posted on 2019-08-08

2559 Dynamics of transcription induced by osmostress promoters revealed by live single-cell assays

Wosika, V.; Pelet, S.

10.1101/728329 — biochemistry — Posted on 2019-08-08

2560 Rora regulates activated T helper cells during inflammation

Liora, V.; Walker, J. A.; Henriksson, J.; Miao, Z.; Natan, E.; Kar, G.; Clare, S.; Barlow, J. L.; Charidemou, E.; Mamanova, L.; Chen, X.; Proserpio, V.; Pramanik, J.; Woodhouse, S.; Protasio, A. V.; Efremova, M.; Berriman, M.; Dougan, G.; Fisher, J.; Marioni, J. C.; McKenzie, A. N.; Teichmann, S. A.

10.1101/709998 — immunology — Posted on 2019-08-08

2561 Development and External Validation of the Acute COPD Exacerbation Prediction Tool (ACCEPT)

Adibi, A.; Sin, D. D.; Safari, A.; Johnson, K. M.; Aaron, S.; FitzGerald, J. M.; Sadatsafavi, M.

10.1101/651901 — epidemiology — Posted on 2019-08-08

2562 Energy landscape analysis of ecological communities elucidates the phase space of community assembly dynamics

Suzuki, K.; Nakaoka, S.; Fukuda, S.; Masuya, H.

10.1101/709956 — ecology — Posted on 2019-08-08

2563 Exploring and analysing immune single cell multi-omics data with VDJView

Samir, J.; Rizzetto, S.; Gupta, M.; Luciani, F.

10.1101/613083 — bioinformatics — Posted on 2019-08-08

2564 High-content assay for precision medicine discovery in cystic fibrosis.

Prins, S.; Langron, E.; Hastings, C.; Hill, E.; Stefan, A. C.; Griffin, L. D.; Vergani, P.

10.1101/631614 — pharmacology and toxicology — Posted on 2019-08-08

2565 The Kinesin-5 Tail Domain Directly Modulates the Mechanochemical Cycle of the Motor for Anti-Parallel Microtubule Sliding

Bodrug, T.; Wilson-Kubalek, E.; Nithianantham, S.; Thompson, A. F.; Alfieri, A.; Gaska, I.; Major, J.; Debs, G.; Inagaki, S.; Gutierrez, P.; Gheber, L.; McKenney, R.; Sindelar, C.; Milligan, R.; Stumpff, J.; Rosenfeld, S.; Forth, S. T.; Al-Bassam, J.

10.1101/713909 — biophysics — Posted on 2019-08-08

2566 Highly accessible translation initiation sites are predictive of successful heterologous protein expression

Bhandari, B. K.; Lim, C. S.; Gardner, P. P.

10.1101/726752 — bioinformatics — Posted on 2019-08-08

2567 R-peak detector stress test with a new noisy ECG database reveals significant performance differences amongst popular detectors

Porr, B.; Howell, L.

10.1101/722397 — bioengineering — Posted on 2019-08-08

2568 An early phase of instructive plasticity in visual cortex before the typical onset of sensory experience

Roy, A.; Wang, S.; Meschede-Krasa, B.; Breffle, J.; Van Hooser, S. D.

10.1101/635870 — neuroscience — Posted on 2019-08-08

2569 Recapitulation and reversal of schizophrenia-related phenotypes in Setd1a-deficient mice

Mukai, J.; Cannavo, E.; Crabtree, G. W.; Sun, Z.; Diamantopoulou, A.; Thakur, P.; Chang, C.-Y.; Cai, Y.; Lomvardas, S.; Takata, A.; Xu, B.; Gogos, J.

10.1101/529701 — neuroscience — Posted on 2019-08-08

2570 Experimental manipulation of selfish genetic elements links genes to microbial community function

Quistad, S.; Doulcier, G.; Rainey, P. B.

10.1101/608752 — microbiology — Posted on 2019-08-08

2571 Genetic variation in herbivore resistance within a strawberry crop wild relative (Fragaria vesca L.)

Weber, D.; Egan, P. A.; Muola, A.; Stenberg, J. A.

10.1101/728360 — plant biology — Posted on 2019-08-07

2572 Influence Of Salt Stress On The flg22 Induced ROS Production In Arabidopsis thaliana Leaves

Amrahov, N. R.; Janda, M.; Mammadov, Z. M.; Valentova, O.; Burketova, L.; Quliyev, A. A.

10.1101/727040 — physiology — Posted on 2019-08-07

2573 Bioactivity of curcumin on the cytochrome P450 enzymes of the steroidogenic pathways

Castano, P. R.; Parween, S.; Pandey, A. V.

10.1101/669440 — pharmacology and toxicology — Posted on 2019-08-07

2574 Distributed neural replay of decision confidence mediates informational conformity

Mahmoodi, A.; Nili, H.; Mehring, C.; Bahrami, B.

10.1101/728428 — neuroscience — Posted on 2019-08-07

2575 Can sleep protect memories from catastrophic forgetting?

Gonzalez, O. C.; Sokolov, Y.; Krishnan, G.; Bazhenov, M.

10.1101/569038 — neuroscience — Posted on 2019-08-07

2576 Increased O-GlcNAcylation rapidly decreases GABAAR currents in hippocampus yet depresses neuronal output

Stewart, L. T.; Abiraman, K.; Chatham, J. C.; McMahon, L. L.

10.1101/672055 — neuroscience — Posted on 2019-08-07

2577 Tau Accumulation via Reduced BAG3-mediated Autophagy Is Required for GGGGCC Repeat Expansion-Induced Neurodegeneration

Wen, X.; An, P.; Li, H.; Zhou, Z.; Sun, Y.; Wang, J.; Ma, L.; Lu, B.

10.1101/727008 — neuroscience — Posted on 2019-08-07

2578 The autoregulation of Escherichia coli RelA through intramolecular interactions

Turnbull, K. J.; Dzhygyr, I.; Lindemose, S.; Hauryliuk, V.; Roghanian, M.

10.1101/680231 — molecular biology — Posted on 2019-08-07

2579 Biogeographical patterns in soil bacterial communities across the Arctic region

Malard, L. A.; Anwar, M. Z.; Jacobsen, C. S. A.; Pearce, D. A.

10.1101/655431 — microbiology — Posted on 2019-08-07

2580 Globally Harmonized Carbon Storage Data

Johnson, J. A.

10.1101/727750 — ecology — Posted on 2019-08-07

2581 Helicobacter pylori biofilm cells are metabolically distinct, express flagella, and antibiotic tolerant

Hathroubi, S.; Zerebinski, J.; Ottemann, K.

10.1101/728766 — microbiology — Posted on 2019-08-07

2582 Indirect actuation reduces flight power requirements in Manduca sexta via elastic energy exchange

Gau, J.; Gravish, N.; Sponberg, S.

10.1101/727743 — biophysics — Posted on 2019-08-07

2583 Metabolically-active obligate aerobes in anoxic (sulfidic) marine sediments

Bhattacharya, S.; Roy, C.; Mandal, S.; Rameez, M. J.; Sarkar, J.; Fernandes, S.; Mapder, T.; Alam, M.; Roy, R.; Mondal, N.; Pyne, P.; Haldar, P. K.; Peketi, A.; Chakraborty, R.; Mazumdar, A.; Ghosh, W.

10.1101/728287 — microbiology — Posted on 2019-08-07

2584 A highly parallel, automated platform enabling individual or sequential ChIP of histone marks and transcription factors

Dainese, R.; Gardeux, V.; Llimos, G.; Alpern, D.; Jiang, J. Y.; Meireles-Filho, A.; Deplancke, B.

10.1101/728634 — bioengineering — Posted on 2019-08-07

2585 Visual epidural field potentials possess high functional specificity in single trials.

Fischer, B.; Schander, A.; Kreiter, A. K.; Lang, W.; Wegener, D.

10.1101/646612 — neuroscience — Posted on 2019-08-07

2586 Cyclin Dependent Kinase 5 (CDK5) Regulates the Circadian Clock

Brenna, A.; Olejniczak, I.; Chavan, R.; Ripperger, J. A.; Langmesser, S.; Cameroni, E.; Hu, Z.; De Virgilio, C.; Dengjel, J.; Albrecht, U.

10.1101/728733 — neuroscience — Posted on 2019-08-07

2587 BactMAP: an R package for integrating, analyzing and visualizing bacterial microscopy data

van Raaphorst, R.; Kjos, M.; Veening, J.-W.

10.1101/728782 — microbiology — Posted on 2019-08-07

2588 The interplay between molten globule intermediates and heme disassociation characterizes human hemoglobin disassembly

Samuel, P. P.; White, M. A.; Ou, W. C.; Case, D. A.; Phillips, G. N.; Olson, J. S.

10.1101/726216 — biophysics — Posted on 2019-08-07

2589 Bayesian multivariate reanalysis of large genetic studies identifies many new associations

Turchin, M. C.; Stephens, M.

10.1101/638882 — genomics — Posted on 2019-08-07

2590 Evolutionary arms-races between host and parasitic RNA replicators in an artificial cell-like system

Furubayashi, T.; Ueda, K.; Bansho, Y.; Motooka, D.; Nakamura, S.; Ichihashi, N.

10.1101/728659 — evolutionary biology — Posted on 2019-08-07

2591 Comparing the microbial communities of natural and supplemental nests of an endangered ecosystem engineer

Thoemmes, M. S.; Cove, M. V.

10.1101/727966 — ecology — Posted on 2019-08-07

2592 Cortical excitation-inhibition ratio mediates the effect of pre-attentive auditory processing deficits on interpersonal difficulties

Ford, T. C.; Woods, W.; Enticott, P. G.; Crewther, D. P.

10.1101/728204 — neuroscience — Posted on 2019-08-07

2593 High order structure in mouse courtship vocalizations

Hertz, S.; Weiner, B.; Perets, N.; London, M.

10.1101/728477 — bioinformatics — Posted on 2019-08-07

2594 Long-term associative memory in rats: effects of familiarization period in object-place-context recognition test

Shimoda, S.; Ozawa, T.; Yamada, K.; Ichitani, Y.

10.1101/728295 — animal behavior and cognition — Posted on 2019-08-07

2595 De novo transcriptome profiling of mustard aphid (Lipaphis erysimi) and differential expression of transcripts associated with developmental stages, feeding and non-feeding conditions

Chongtham, R.; Kulkarni, K.; Shukla, R. N.; Joshi, G.; Kumar, A.; Goel, S.; Agarwal, M.; Jagannath, A.

10.1101/717470 — systems biology — Posted on 2019-08-07

2596 Lipid digestion and autophagy are critical energy providers during acute glucose depletion in Saccharomyces cerevisiae

Weber, C. A.; Sekar, K.; Tang, J. H.; Warmer, P.; Sauer, U.; Weis, K.

10.1101/728667 — systems biology — Posted on 2019-08-07

2597 Interactions between the N- and C- termini of mechanosensitive ion channel AtMSL10 support a three-step mechanism for activating its signaling function

Basu, D.; Shoots, J.; Harkess, A.; Veley, K.; Haswell, E.

10.1101/726521 — plant biology — Posted on 2019-08-07

2598 Commensal bacteria differentially shape the nutritional requirements of Drosophila during juvenile growth

Consuegra, J.; Grenier, T.; Baa-Puyoulet, P.; Rahioui, I.; Akherraz, H.; Gervais, H.; Parisot, N.; da Silva, P.; Charles, H.; Calevro, F.; Leulier, F.

10.1101/728774 — physiology — Posted on 2019-08-07

2599 Listening difficulties in children: Behavior and brain activation produced by dichotic listening of CV syllables

Moore, D. R.; Hugdahl, K.; Stewart, H. J.; Vannest, J.; Perdew, A. J.; Sloat, N. T.; Cash, E.; Hunter, L. L.

10.1101/721209 — neuroscience — Posted on 2019-08-07

2600 Deletion of calcineurin from GFAP-expressing astrocytes impairs excitability of cerebellar and hippocampal neurons through astroglial Na+/K+ ATPase.

Tapella, L.; Soda, T.; Mapelli, L.; Bortolotto, V.; Bondi, H.; Ruffinatti, F. A.; Dematteis, G.; Stevano, A.; Dionisi, M.; Ummarino, S.; Di Ruscio, A.; Distasi, C.; Grilli, M.; Genazzani, A. A.; D'Angelo, E.; Moccia, F.; Lim, D.

10.1101/728741 — neuroscience — Posted on 2019-08-07

2601 Identification of cerebellar afferent projections in a nonhuman primate using CAV-2 vectors

Dopeso Reyes, I. G.; Junyent, F.; Mestre-Frances, N.; Whebi, A.; Beucher, B.; Kremer, E. J.

10.1101/728709 — neuroscience — Posted on 2019-08-07

2602 Improved chemistry restraints for crystallographic refinement by integrating the Amber force field into Phenix

Moriarty, N. W.; Janowski, P. A.; Swails, J.; Nguyen, H.; Richardson, J. S.; Case, D. A.; Adams, P. D.

10.1101/724567 — molecular biology — Posted on 2019-08-07

2603 Membrane synthesis in Escherichia coli is coordinated with growth via post-translational regulation

Noga, M. J.; Buke, F.; van den Broek, N. J.; Imholz, N.; Scherer, N.; Bokinsky, G.

10.1101/728451 — microbiology — Posted on 2019-08-07

2604 Mining the human tonsillar microbiota as autoimmune modulator

Li, J.; Li, S.; Jin, J.; Guo, R.; Sun, X.; Guo, J.; Hu, F.; Liu, Y.; Jin, Y.; Zhou, Y.; Xiao, W.; Zhong, Y.; Huang, F.; Pan, H.; Yang, R.; Zhou, Y.; Deng, K.; Wu, L.; Liu, L.; Qin, J.; Wang, J.; He, J.; Li, Z.

10.1101/719807 — microbiology — Posted on 2019-08-07

2605 Isolation and characterisation of novel phages infecting Lactobacillus plantarum and proposal of a new genus, \"Silenusvirus\".

Kyrkou, I.; Byth Carstens, A.; Ellegaard-Jensen, L.; Kot, W.; Zervas, A.; Djurhuus, A. M.; Neve, H.; Franz, C. M. A. P.; Hansen, M.; Hestbjerg Hansen, L.

10.1101/728261 — microbiology — Posted on 2019-08-07

2606 Emergence and patterning dynamics of mouse definitive endoderm

Pour, M.; Kumar, A. S.; Walther, M.; Wittler, L.; Meissner, A.; Nachman, I.

10.1101/728642 — developmental biology — Posted on 2019-08-07

2607 Statins Stimulate Hepatic Glucose Production via the miR-183/96/182 Cluster

Marquart, T. J.; Allen, R. M.; Chen, M. R.; Dorn, G. W.; Matkovich, S. J.; Baldan, A.

10.1101/726695 — cell biology — Posted on 2019-08-07

2608 Structural models of full-length JAK2 kinase

Ayaz, P.; Hammaren, H.; Raivola, J.; Sharon, D.; Hubbard, S.; Silvennoinen, O.; Shan, Y.; Shaw, D.

10.1101/727727 — biochemistry — Posted on 2019-08-07

2609 Impact of global warming on insects: are tropical species more vulnerable than temperate species?

Johansson, F.; Orizaola, G.; Nilsson-Ortman, V.

10.1101/728352 — ecology — Posted on 2019-08-07

2610 PulmonDB: a curated lung disease gene expression database

Villasenor-Altamirano, A. B.; Moretto, M.; Zayas-Del Moral, A.; Maldonado, M.; Munguia-Reyes, A.; Romero, Y.; Garcia-Sotelo, J. S.; Aguilar Bautista, L. A.; Aldana-Assad, O.; Engelen, K.; Selman, M.; Collado-Vides, J.; Balderas-Martinez, Y. I.; Medina Rivera, A.

10.1101/726745 — bioinformatics — Posted on 2019-08-07

2611 Dynamics of transcription induced by osmostress promoters reveled by live single-cell assays

Wosika, V.; Pelet, S.

10.1101/728329 — biochemistry — Posted on 2019-08-07

2612 SIDT2 RNA transporter promotes lung and gastrointestinal tumor development

Nguyen, T.; Bieging-Rolett, K.; Putoczki, T.; Wicks, I.; Attardi, L.; Pang, K.

10.1101/724237 — cancer biology — Posted on 2019-08-07

2613 MIXTURE: an improved algorithm for immune tumor microenvironment estimation based on gene expression data.

Fernandez, E.; Mahmoud, Y. D.; Veigas, F.; Rocha, D.; Balzarini, M.; Lujan, H. D.; Rabinovich, G. A.; Girotti, M. R.

10.1101/726562 — bioinformatics — Posted on 2019-08-07

2614 Screening yeast display libraries against magnetized yeast cell targets enables efficient isolation of membrane protein binders.

Bacon, K.; Burroughs, M.; Blain, A.; Menegatti, S.; Rao, B. M.

10.1101/728436 — bioengineering — Posted on 2019-08-07

2615 Nucleic acid amplification by a transparent graphene Visual-PCR chip and a disposable thermocycler

Zhu, G.; Qiao, M.

10.1101/724245 — molecular biology — Posted on 2019-08-07

2616 Integrating electric field modelling and neuroimaging to explain inter-individual variability of tACS effects

Kasten, F. H.; Duecker, K.; Maack, M. C.; Meiser, A.; Herrmann, C. S.

10.1101/581207 — neuroscience — Posted on 2019-08-07

2617 STXBP5/tomosyn regulates the small RhoA GTPase to control the dendritic stability of neurons and the surface expression of AMPA receptors

Shen, W.; Kilander, M. B. C.; Bridi, M. S.; Frei, J. A.; Niescier, R. F.; Huang, S.; Lin, Y.-C.

10.1101/617845 — neuroscience — Posted on 2019-08-07

2618 Statistical modeling, estimation, and remediation of sample index hopping in multiplexed droplet-based single-cell RNA-seq data

Farouni, R.; Djambazian, H.; Ragoussis, J.; Najafabadi, H. S.

10.1101/617225 — bioinformatics — Posted on 2019-08-07

2619 Inter-individual and inter-strain differences in cognitive and social abilities of Dark Agouti and Wistar Han rats

Alonso, L.; Peeva, P.; Ramos-Prats, A.; Alenina, N.; Winter, Y.; Rivalan, M.

10.1101/566877 — animal behavior and cognition — Posted on 2019-08-07

2620 Hfq CLASH uncovers sRNA-target interaction networks involved in adaptation to nutrient availability

Iosub, I. A.; Marchioretto, M.; Sy, B.; McKellar, S.; Nieken, K. J.; van Nues, R. W.; Tree, J. J.; Viero, G.; Granneman, S.

10.1101/481986 — systems biology — Posted on 2019-08-07

2621 Measuring graded changes in consciousness through multi-target filling-in

Davidson, M. J.; Graafsma, I.; Tsuchiya, N.; van Boxtel, J. J. A.

10.1101/499517 — neuroscience — Posted on 2019-08-07

2622 Gut microbiome communication with bone marrow regulates susceptibility to amebiasis

Burgess, S. L.; Leslie, J. L.; Uddin, M. J.; Oakland, N.; Watanabe, K.; Gilchrist, C.; Moreau, G. B.; Saleh, M.; Simpson, M.; Thompson, B.; Auble, D. T.; Turner, S.; Giallourou, N.; Swann, J.; Pu, Z.; Ma, J. Z.; Haque, R.; Petri, W. A.

10.1101/487652 — microbiology — Posted on 2019-08-07

2623 Ecological Network assembly: how the regional meta web influence local food webs

Saravia, L. A.; Marina, T. I.; De Troch, M.; Momo, F. R.

10.1101/340430 — ecology — Posted on 2019-08-07

2624 Life-history traits inform on population trends when assessing the conservation status of a declining tiger shark population

Brown, C.; Roff, G.

10.1101/395509 — ecology — Posted on 2019-08-07

2625 Rapid heuristic inference of antibiotic resistance and susceptibility by genomic neighbor typing

Brinda, K.; Callendrello, A.; Ma, K. C.; MacFadden, D. R.; Charalampous, T.; Lee, R. S.; Cowley, L.; Wadsworth, C. B.; Grad, Y. H.; Kucherov, G.; O'Grady, J.; Baym, M.; Hanage, W. P.

10.1101/403204 — bioinformatics — Posted on 2019-08-07

2626 Conditioning by Subthreshold Synaptic Input Changes the Intrinsic Firing Pattern of CA3 Hippocampal Neurons

Soldado-Magraner, S.; Brandalise, F.; Honnuraiah, S.; Pfeiffer, M.; Gerber, U.; Douglas, R.

10.1101/084152 — neuroscience — Posted on 2019-08-07

2627 Modelling the influence of the hippocampal memory system on the oculomotor system.

Ryan, J. D.; Shen, K.; Kacollja, A.; Tian, H.; Griffiths, J.; Bezgin, G.; McIntosh, R.

10.1101/303511 — neuroscience — Posted on 2019-08-07

2628 A comparison of immunoglobulin IGHV, IGHD and IGHJ genes in wild-derived and classical inbred mouse strains

Watson, C. T.; Kos, J. T.; Gibson, W. S.; Busse, C. E.; Newman, L.; Deikus, G.; Smith, M. L.; Jackson, K. J.; Colins, A. M.

10.1101/631754 — immunology — Posted on 2019-08-07

2629 Evolution of imprinting via lineage-specific insertion of retroviral promoters

Bogutz, A. B.; Brind'Amour, J.; Kobayashi, H.; Jensen, K. N.; Nakabayashi, K.; Imai, H.; Lorincz, M. C.; Lefebvre, L.

10.1101/723254 — genetics — Posted on 2019-08-07

2630 Evaluation of parameters affecting performance and reliability of machine learning-based antibiotic susceptibility testing from whole genome sequencing data

Hicks, A. L.; Wheeler, N.; Sanchez-Buso, L.; Rakeman, J. L.; Harris, S. R.; Grad, Y. H.

10.1101/607127 — microbiology — Posted on 2019-08-07

2631 MECP2 duplication causes aberrant GABA pathways, circuits and behaviors in transgenic monkeys: neural mappings to patients with autism

Cai, D.-C.; Wang, Z.; Bo, T.; Yan, S.; Liu, Y.; Liu, Z.; Zeljic, K.; Chen, X.; Zhan, Y.; Xu, X.; Du, Y.; Wang, Y.; Cang, J.; Wang, G.-Z.; Zhang, J.; Sun, Q.; Qiu, Z.; Ge, S.; Ye, Z.; Wang, Z.

10.1101/728113 — neuroscience — Posted on 2019-08-07

2632 Gene variants in ZGRF1 implicated for a rare sensory reflex epilepsy

Roy Choudhury, S.; Satishchandra, P.; Sinha, S.; Anand, A.

10.1101/728188 — genetics — Posted on 2019-08-07

2633 Predictability changes what we remember in familiar temporal contexts

Kim, H.; Schlichting, M. L.; Preston, A. R.; Lewis-Peacock, J. A.

10.1101/469965 — neuroscience — Posted on 2019-08-07

2634 Widespread transcriptional responses to the thermal stresses are prewired in human 3D genome

Li, X.; Xu, B.; Li, X.; Wang, D.; An, Z.; Jia, Y.; Niu, J.; Gao, J.; Zhang, M. Q.; Li, F.; Zhang, Z.

10.1101/728220 — genomics — Posted on 2019-08-07

2635 Zinc-α2-Glycoprotein Is An Inhibitor Of Amine Oxidase Copper-Containing 3

Romauch, M.

10.1101/727214 — biochemistry — Posted on 2019-08-07

2636 SIZ1 is a nuclear host target of the nematode effector GpRbp1 from Globodera pallida that acts as a negative regulator of basal plant defense to cyst nematodes

Diaz Granados Munoz, A.; Sterken, M.; Persoon, J.; Overmars, H.; Pokhare, S.; Mazur, M.; Martin Ramirez, S.; Holterman, M.; Martin, E.; Pomp, R.; Finkers-Tomczak, A.; Roosien, J.; Elashry, A.; Grundler, F.; Petrescu, A.; Smant, G.; Goverse, A.

10.1101/725697 — plant biology — Posted on 2019-08-07

2637 Direct Binding of Phosphatidylglycerol at Specific Sites Modulates Desensitization of a Pentameric Ligand-Gated Ion Channel

Tong, A.; Petroff, J. T.; Hsu, F.-F.; Schmidpeter, P. A.; Nimigean, C. M.; Sharp, L.; Brannigan, G.; Cheng, W. W.

10.1101/722512 — biophysics — Posted on 2019-08-07

2638 Early-life adversity is associated with differential gene expression in response to acute psychological stress: preliminary findings

Shalev, I.; Hastings, W. J.; Etzel, L.; Israel, S.; Russell, M. A.; Hendrick, K. A.; Zinobile, M.; Siegel, S. R.

10.1101/727180 — molecular biology — Posted on 2019-08-07

2639 Mutation of Ebola virus VP35 Ser129 uncouples interferon antagonist and replication functions

Morwitzer, M. J.; Corona, A.; Zinzula, L.; Fanunza, E.; Nigri, C.; Distinto, S.; Vornholt, C.; Kumar, V.; Tramontano, E.; Reid, S. P.

10.1101/726935 — microbiology — Posted on 2019-08-07

2640 A Literature-Based Knowledge Graph Embedding Method for Identifying Drug Repurposing Opportunities in Rare Diseases

Sosa, D. N.; Derry, A.; Guo, M.; Wei, E.; Brinton, C.; Altman, R. B.

10.1101/727925 — bioinformatics — Posted on 2019-08-07

2641 C. difficile-associated antibiotics prime the host for infection by a microbiome-independent mechanism.

Kester, J. C.; Brubaker, D. K.; Velazquez, J.; Wright, C.; Lauffenburger, D. A.; Griffith, L. G.

10.1101/728170 — molecular biology — Posted on 2019-08-07

2642 Kaposi’s sarcoma-associated herpesvirus ORF66 is essential for late gene expression and virus production via interaction with ORF34

Watanabe, T.; Nishimura, M.; Izumi, T.; Kuriyama, K.; Iwaisako, Y.; Hosokawa, K.; Takaori-Kondo, A.; Fujimuro, M.

10.1101/728147 — microbiology — Posted on 2019-08-07

2643 Comparative analysis of MOBQ4 plasmids demonstrates that MOBQ is a cis-acting-enriched relaxase protein family

Garcillan-Barcia, M. P.; Cuartas-Lanza, R.; Cuevas, A.; de la Cruz, F.

10.1101/726927 — microbiology — Posted on 2019-08-07

2644 Multi-omic analysis of medium-chain fatty acid synthesis by Candidatus Weimerbacter bifidus, gen. nov., sp. nov., and Candidatus Pseudoramibacter fermentans, sp. nov.

Scarborough, M. J.; Myers, K.; Donohue, T. J.; Noguera, D. R.

10.1101/726943 — microbiology — Posted on 2019-08-07

2645 bioPROTACs as versatile modulators of intracellular therapeutic targets: Application to proliferating cell nuclear antigen (PCNA)

Lim, S.; Khoo, R.; Peh, K. M.; Teo, J.; Chang, S. C.; Ng, S.; Beilhartz, G. L.; Melnyk, R. A.; Lane, D. P.; Henry, B.; Partridge, A. W.

10.1101/728071 — cell biology — Posted on 2019-08-07

2646 The PRMT7-dependent methylation of shank2 modulates invasion-proliferation switching during breast cancer metastasis

Liu, Y.; Liu, X.; Liu, L.; Wang, Y.; Peng, L.; Liu, J.; Li, L.; Zhang, L.; Wang, G.; Li, H.; Liu, D.; Huang, B.; Lu, J.; Zhang, Y.

10.1101/728410 — cancer biology — Posted on 2019-08-07

2647 Comparative investigation into formycin A and pyrazofurin A biosynthesis reveals branch pathways for the construction of C-nucleoside scaffolds

zhang, m.; Zhang, P.; Xu, G.; zhou, w.; Gao, Y.; Gong, R.; Cai, Y.-s.; cong, h.; DENG, Z.; Price, N. P. J.; Mao, X.; Chen, W.

10.1101/728154 — biochemistry — Posted on 2019-08-07

2648 The interaction between elapsed time and decision accuracy differs between humans and rats performing the same visual motion discrimination task

Shevinsky, C. A.; Reinagel, P.

10.1101/726703 — animal behavior and cognition — Posted on 2019-08-07

2649 Developmental Characterization of Zswim5 Expression in the Progenitor Domains and Tangential Migration Pathways of Cortical Interneurons in the Mouse Forebrain

Chang, C.-C.; Kuo, H.-Y.; Chen, S.-Y.; Lu, K.-M.; Fong, W. L.; Wu, H.-L.; Saito, T.; Liu, F.-C.

10.1101/728097 — neuroscience — Posted on 2019-08-07

2650 Epitranscriptomic regulation of the response to the air pollutant naphthalene in mouse lungs: from the perspectives of specialized translation and tolerance linked to the writer ALKBH8

Leonardi, A.; Kovalchuk, N.; Yin, L.; Endres, L.; Evke, S.; Nevins, S.; Martin, S.; Dedon, P. C.; Melendez, J. A.; Van Winkle, L. S.; Zhang, Q.-Y.; Ding, X.; Begley, T. J.

10.1101/727909 — molecular biology — Posted on 2019-08-07

2651 Identification of essential oils with activity against stationary phase Staphylococcus aureus

Xiao, S.; Cui, P.; Shi, W.; Zhang, Y.

10.1101/727883 — microbiology — Posted on 2019-08-07

2652 A phylogenomic approach reveals a low somatic mutation rate in a long-lived plant

Orr, A. J.; Padovan, A.; Kainer, D.; Kulheim, C.; Bromham, L.; Bustos-Segura, C.; Foley, W.; Haff, T.; Hsieh, J.-F.; Morales Suarez, A.; Cartwright, R. A.; Lanfear, R.

10.1101/727982 — genomics — Posted on 2019-08-07

2653 24-hour multi-omics analysis of residential sewage reflects human activity and informs public health

Matus, M.; Duvallet, C.; Kido Soule, M.; Kearney, S. M.; Endo, N.; Ghaeli, N.; Brito, I.; Ratti, C.; Kujawinski, E.; Alm, E. J.

10.1101/728022 — genomics — Posted on 2019-08-07

2654 Spatial structure undermines parasite suppression by gene drive cargo

Bull, J. J.; Remien, C. H.; Gomuliiewicz, R.; Krone, S. M.

10.1101/728006 — evolutionary biology — Posted on 2019-08-07

2655 scAEspy: a unifying tool based on autoencoders for the analysis of single-cell RNA sequencing data

Tangherloni, A.; Ricciuti, F.; Besozzi, D.; Lio, P.; Cvejic, A.

10.1101/727867 — bioinformatics — Posted on 2019-08-07

2656 The Urfold: Structural Similarity Just above the Superfold Level?

Mura, C.; Veretnik, S.; Bourne, P. E.

10.1101/728030 — bioinformatics — Posted on 2019-08-07

2657 Morphology of obligate ectosymbionts reveals Paralaxus gen. nov., a new circumtropical genus of marine stilbonematine nematodes

Scharhauser, F.; Zimmermann, J.; Ott, J.; Leisch, N.; Gruber-Vodicka, H. R.

10.1101/728105 — zoology — Posted on 2019-08-07

2658 Metabolic Profiling of Aortic Stenosis and Hypertrophic Cardiomyopathy Identifies Mechanistic Contrasts in Substrate Utilisation

Pal, N.; Acharjee, A.; Ament, Z.; Dent, T.; Yavari, A.; Mahmod, M.; Ariga, R.; West, J.; Steeples, V.; Cassar, M.; Howell, N. J.; Lockstone, H.; Elliott, K.; Yavari, P.; Nguyen, T. H.; Briggs, W.; Hare, D. L.; French, J.; Unger, S.; Richards, M.; Keech, A.; Horowitz, J. D.; Frenneaux, M.; Prendergast, B.; Dwight, J. S.; Kharbanda, R.; Watkins, H.; Ashrafian, H.; Griffin, J.

10.1101/715680 — systems biology — Posted on 2019-08-07

2659 Genomic predictive ability for foliar nutritive traits in perennial ryegrass

Arojju, S. K.; Cao, M.; Jahufer, M. Z. Z.; Barrett, B.; Faville, M.

10.1101/727958 — plant biology — Posted on 2019-08-07

2660 Heating quinoa shoots results in yield loss by inhibiting fruit production and delaying maturity

Tovar, J. C.; Quillatupa, C.; Callen, S. T.; Castillo, S. E.; Pearson, P.; Shamin, A.; Schuhl, H.; Fahlgren, N.; Gehan, M. A.

10.1101/727545 — plant biology — Posted on 2019-08-07

2661 Using high-definition transcranial direct current stimulation to elucidate the role of the cerebello-thalamo-prefrontal network in explicit sequence learning

Ballard, H. K.; Eakin, S.; Goen, J. R. M.; Maldonado, T.; Bernard, J. A.

10.1101/727842 — neuroscience — Posted on 2019-08-07

2662 Automated Separation of Diffusely Abnormal White Matter from Focal White Matter Lesions on MRI in Multiple Sclerosis

Maranzano, J.; Dadar, M.; Arnold, D.; Collins, D. L.; Narayanan, S.

10.1101/727818 — neuroscience — Posted on 2019-08-07

2663 Gamma oscillations during episodic memory processing reveal reversal of information flow between the hippocampus and prefrontal cortex

Seger, S.; Rugg, M.; Lega, B. C.

10.1101/728469 — neuroscience — Posted on 2019-08-07

2664 Structural insights into the molecular mechanisms of the Mycobacterium evolvability factor Mfd

Natesh, R.; Putta, S.; Prabha, S.; Bhat, V.; Fox, G. C.; Walsh, M. A.; Rao, D. N.; Nagaraja, V.

10.1101/728246 — molecular biology — Posted on 2019-08-07

2665 Structural genomic applied on the rust fungus Melampsora larici-populina reveals two candidate effector proteins adopting cystine-knot and nuclear transport factor 2-like protein folds

DEGUILLEN, K.; Lorrain, C.; Tsan, P.; BARTHE, P.; Petre, B.; Saveleva, N.; Rouhier, N.; Duplessis, S.; PADILLA, A.; Hecker, A.

10.1101/727933 — microbiology — Posted on 2019-08-07

2666 On the evolution of sexual receptivity in female primates

Rooker, K.; Gavrilets, S.

10.1101/727875 — evolutionary biology — Posted on 2019-08-07

2667 Map3k2-Regulated Intestinal Stromal Cells (MRISC) Define a Distinct Sub-cryptic Stem Cell Niche for Damage Induced Wnt Agonist R-spondin1 Production

Wu, N.; Sun, H.; Zhao, X.; Chen, L.; Qi, Y.; Han, Y.; Liu, X.-n.; Gao, C.; Wang, Q.; He, L.; Niu, X.; Liu, Z.; Li, H.; Zeng, Y. A.; Roulis, M.; Liu, D.; Yang, Z.; Zhou, B.; Flavell, R.; Su, B.

10.1101/723221 — cell biology — Posted on 2019-08-07

2668 Dual function of HYPONASTIC LEAVES 1 during early skotomorphogenic growth in Arabidopsis

Sacnun, J. M.; Crespo, R.; Palatnik, J.; Rasia, R.; Gonzalez-Schain, N.

10.1101/728527 — plant biology — Posted on 2019-08-07

2669 Inhibition of articulation muscles during listening and reading: a matter of intention to speak out loud

Zur, N. R.; Eviatar, Z.; Karni, A.

10.1101/728485 — neuroscience — Posted on 2019-08-07

2670 When two mindfulnesses meet.

Lakatos, L.; Turcotte, J.; Oddson, B.

10.1101/728584 — neuroscience — Posted on 2019-08-07

2671 Computational modelling of the long-term effects of brain stimulation on the local and global structural connectivity of epileptic patients

Giannakakis, E.; Kaiser, M.; Hutchings, F.; Papasavvas, C.; Han, C.; Weber, B.; Zhang, C.

10.1101/728576 — neuroscience — Posted on 2019-08-07

2672 Breeding of a high-yield strain for commercial cultivation by crossing Pholiota adiposa and P. limonella

Rong, C.; Song, S.; Yang, L.; Zhang, J.; Niu, Y.; Pan, X.; Song, Q.; Liu, Y.; Wang, S.

10.1101/728626 — microbiology — Posted on 2019-08-07

2673 Comprehensive Analysis of Human Subtelomeres by Whole Genome Mapping

Young, E.; Abid, H. Z.; Kwok, P.-Y.; Riethman, H.; Xiao, M.

10.1101/728519 — genomics — Posted on 2019-08-07

2674 Dramatically diverse S. pombe wtf meiotic drivers all display high gamete-killing efficiency

Bravo Nunez, M. A.; Sabbarini, I. M.; Eickbush, M. T.; Liang, Y.; Lange, J. J.; Kent, A. M.; Zanders, S.

10.1101/728535 — genetics — Posted on 2019-08-07

2675 Growth behavior and glyphosate resistance level in 10 biotypes of Echinochloa colona in Australia

Mahajan, G.; Kaur, V.; Thompson, M.; Chauhan, B. S.

10.1101/728592 — ecology — Posted on 2019-08-07

2676 Identification of biomarkers associated with ovarian cancer based on transcriptome sequencing

chen, j.; peng, x.; yu, m.

10.1101/728618 — bioinformatics — Posted on 2019-08-07

2677 Mesenchymal Stem/ Stromal Cells metabolomic and bioactive factors profiles: a comparative analysis on the Umbilical Cord and Dental Pulp derived Stem/ Stromal Cells secretome

Caseiro, A. R.; Santos Pedrosa, S.; Ivanova, G.; Vieira Branquinho, M.; Almeida, A.; Faria, F.; Amorim, I.; Pereira, T.; Mauricio, A. C.

10.1101/728550 — bioengineering — Posted on 2019-08-07

2678 The Gene Expression Deconvolution Interactive Tool: Accurate Cell Type Quantification from Gene Expression Data

Nadel, B. B.; Lopez, D.; Montoya, D.; Waddel, H.; Khan, M.; Pellegrini, M.

10.1101/728493 — bioinformatics — Posted on 2019-08-07

2679 Combined neural tuning in human ventral temporal cortex resolves perceptual ambiguity

Rosenke, M.; Davidenko, N.; Grill-Spector, K.; Weiner, K. S.

10.1101/460337 — neuroscience — Posted on 2019-08-07

2680 Single-cell radioluminescence microscopy with two-fold higher sensitivity using dual scintillator configuration

Kim, T. J.; Wang, Q.; Shelor, M.; Pratx, G.

10.1101/725994 — bioengineering — Posted on 2019-08-07

2681 Chromosome-level genome assembly of a butterflyfish, Chelmon rostratus

Huang, X.; Song, Y.; Zhang, S.; A, Y.; Zhang, M.; Chang, Y.; Zhang, H.; Li, C.; Zhao, Y.; Liu, M.; Seim, I.; Fan, G.; Liu, X.; Liu, S.

10.1101/719187 — genomics — Posted on 2019-08-06

2682 Lipid droplet accumulating microglia represent a dysfunctional and pro-inflammatory state in the aging brain

Marschallinger, J.; Iram, T.; Zardeneta, M.; Lee, S.; Lehallier, B.; Haney, M.; Pluvinage, J.; Mathur, V.; Hahn, O.; Morgens, D.; Kim, J.; Tevini, J.; Felder, T.; Wolinski, H.; Bertozzi, C.; Bassik, M.; Aigner, L.; Wyss-Coray, T.

10.1101/722827 — neuroscience — Posted on 2019-08-06

2683 Phage composition of a fermented milk and colostrum product assessed by microbiome array; putative role of open reading frames

Pacini, S.; Ruggiero, M.

10.1101/714154 — microbiology — Posted on 2019-08-06

2684 Resolving genetic linkage reveals patterns of selection in HIV-1 evolution

Sohail, M. S.; Louie, R. H. Y.; McKay, M. R.; Barton, J. P.

10.1101/711861 — evolutionary biology — Posted on 2019-08-06

2685 Transcription factor NF-κB in a basal metazoan, the sponge, has conserved and unique sequences, activities, and regulation

Williams, L. M.; Inge, M. M.; Mansfield, K. M.; Rasmussen, A.; Afghani, J.; Agrba, M.; Albert, C.; Andersson, C.; Babaei, M.; Babaei, M.; Bagdasaryants, A.; Bonilla, A.; Browne, A.; Carpenter, S.; Chen, T.; Christie, B.; Cyr, A.; Dam, K.; Dulock, N.; Erdene, G.; Esau, L.; Esonwune, S.; Hanchate, A.; Huang, X.; Jennings, T.; Kasabwala, A.; Kehoe, L.; Kobayashi, R.; Lee, M.; LeVan, A.; Liu, Y.; Murphy, E.; Nambiar, A.; Olive, M.; Patel, D.; Pavesi, F.; Petty, C. A.; Samofalova, Y.; Sanchez, S.; Stejskal, C.; Tang, Y.; Yapo, A.; Cleary, J. P.; Yunes, S. A.; Siggers, T.; Gilmore, T. D.

10.1101/691097 — cell biology — Posted on 2019-08-06

2686 Inferring neuronal ionic conductances from membrane potentials using CNNs

Ben-Shalom, R.; Balewski, J.; Siththaranjan, A.; Baratham, V.; Kyoung, H.; Kim, K. G.; Bender, K. J.; Bouchard, K. E.

10.1101/727974 — neuroscience — Posted on 2019-08-06

2687 PIRD: Pan immune repertoire database

Zhang, W.; Wang, L.; Liu, K.; Wei, X.; Yang, K.; Du, W.; Wang, S.; Guo, N.; Ma, C.; Luo, L.; Wu, J.; Lin, L.; Yang, F.; Gao, F.; Wang, X.; Li, T.; Zhang, R.; Saksena, N. K.; Yang, H.; Wang, J.; Fang, L.; Hou, Y.; Xu, X.; Liu, X.

10.1101/399493 — immunology — Posted on 2019-08-06

2688 Choice-selective sequences in cortical inputs to the NAc provide a potential substrate for credit assignment

Parker, N. F.; Baidya, A.; Murugan, M.; Engelhard, B.; Zhukovskaya, A.; Goldman, M. S.; Witten, I. B.

10.1101/725382 — neuroscience — Posted on 2019-08-06

2689 Inferring neuronal ionic conductances from membrane potentials using CNNs

Ben-Shalom, R.; Balewski, J.; Siththaranjan, A.; Baratham, V.; Kyoung, H.; Kim, K. G.; Bender, K. J.; Bouchard, K. E.

10.1101/727974 — neuroscience — Posted on 2019-08-06

2690 Multi-model preclinical platform predicts clinical response of melanoma to immunotherapy

Perez-Guijarro, E.; Yang, H. H.; Araya, R. E.; El Meskini, R.; Michael, H. T.; Vodnala, S. K.; Marie, K. L.; Graff-Cherry, C.; Chin, S.; Iacovelli, A. J.; Kulaga, A.; Fon, A.; Michalowski, A. M.; Hugo, W.; Lo, R. S.; Restifo, N. P.; Van Dyke, T.; Sharan, S. K.; Goldszmid, R. S.; Weaver Ohler, Z.; Lee, M. P.; Day, C.-P.; Merlino, G.

10.1101/727826 — cancer biology — Posted on 2019-08-06

2691 Mechanisms of Chromosomal Instability in High-grade Serous Ovarian Carcinoma.

Tamura, N.; Shaikh, N.; Muliaditan, D.; McGuinness, J.; Moralli, D.; Durin, M.-A.; Green, C.; Bowtell, D.; Balkwill, F.; Curtius, K.; McClelland, S.

10.1101/727537 — cancer biology — Posted on 2019-08-06

2692 Gram-positive and Gram-negative Bacteria Share Common Principles to Coordinate Growth and the Cell Cycle at the Single-cell Level

Sauls, J. T.; Cox, S. E.; Do, Q.; Castillo, V.; Ghulam-Jelani, Z.; Jun, S.

10.1101/726596 — systems biology — Posted on 2019-08-06

2693 Leaf anatomy is not correlated to CAM function in a C3+CAM hybrid species, Yucca gloriosa

Heyduk, K.; Ray, J. N.; Leebens-Mack, J.

10.1101/726737 — plant biology — Posted on 2019-08-06

2694 Sex-associated differences in cytomegalovirus prevention: Prophylactic strategy is associated with a strong kidney function impairment in female renal transplant patients

Blazquez-Navarro, A.; Dang-Heine, C.; Bauer, C.; Wittenbrink, N.; Wolk, K.; Sabat, R.; Witzke, O.; Westhoff, T. H.; Sawitzki, B.; Reinke, P.; Thomusch, O.; Hugo, C.; Babel, N.; Or-Guil, M.

10.1101/726968 — pharmacology and toxicology — Posted on 2019-08-06

2695 Microbial genomes retrieved from High Arctic lake sediments encode for adaptation to cold and oligotrophic environments

Ruuskanen, M. O.; Colby, G.; St. Pierre, K.; St. Louis, V.; Aris-Brosou, S.; Poulain, A.

10.1101/724781 — microbiology — Posted on 2019-08-06

2696 Hybridization and diversification are positively correlated across vascular plant families

Mitchell, N.; Whitney, K. D.

10.1101/724377 — evolutionary biology — Posted on 2019-08-06

2697 A Galaxy-based training resource for single-cell RNA-seq quality control and analyses.

Etherington, G. J.; Soranzo, N.; Mohammed, S.; Haerty, W.; Davey, R.; Di Palma, F.

10.1101/724047 — bioinformatics — Posted on 2019-08-06

2698 Injection molded open microfluidic well plate inserts for user-friendly coculture and microscopy

Day, J. H.; Nicholson, T.; Su, X.; Van Neel, T.; Clinton, I.; Kothandapani, A.; Lee, J.; Greenberg, M.; Amory, J.; Walsh, T.; Muller, C.; Franco, O.; Jefcoate, C.; Crawford, S.; Jorgensen, J.; Theberge, A.

10.1101/709626 — bioengineering — Posted on 2019-08-06

2699 sumrep: a summary statistic framework for immune receptor repertoire comparison and model validation

Olson, B. J.; Moghimi, P.; Schramm, C.; Obraztsova, A.; Ralph, D.; Vander Heiden, J. A.; Shugay, M.; Shepherd, A.; Lees, W.; Matsen, F. A.

10.1101/727784 — immunology — Posted on 2019-08-06

2700 Base-pair Ambiguity and the Kinetics of RNA Folding

Zhou, G.; Loper, J.; Geman, S.

10.1101/329698 — bioinformatics — Posted on 2019-08-06

2701 Evolution of conserved noncoding sequences in Arabidopsis thaliana

Yocca, A.; Lu, Z.; Schmitz, R. J.; Freeling, M.; Edger, P.

10.1101/727669 — genomics — Posted on 2019-08-06

2702 Mapping RNA splicing variations in clinically-accessible and non-accessible tissues to facilitate Mendelian disease diagnosis using RNA-seq

Aicher, J. K.; Jewell, P.; Vaquero-Garcia, J.; Barash, Y.; Bhoj, E. J.

10.1101/727586 — genomics — Posted on 2019-08-06

2703 A ClyA nanopore tweezer for analysis of functional states of protein-ligand interactions

Li, X.; Lee, K. H.; Chen, J.; Chen, M.

10.1101/727503 — biophysics — Posted on 2019-08-06

2704 Twister3: a simple and fast microwire twister

Newman, J. P.; Voigts, J.; Borius, M.; Karlsson, M.; Harnett, M. T.; Wilson, M. A.

10.1101/727644 — neuroscience — Posted on 2019-08-06

2705 The geographic distribution of reef and oceanic manta rays in the south-east Indian and south-west Pacific Oceans

Armstrong, A. J.; Armstrong, A. O.; Bennett, M. B.; McGregor, F.; Abrantes, K. G.; Barnett, A.; Richardson, A. J.; Townsend, K. A.; Dudgeon, C. L.

10.1101/727651 — ecology — Posted on 2019-08-06

2706 Globally Harmonized Carbon Storage Data using a Simple Decision Tree Approach

Johnson, J. A.

10.1101/727750 — ecology — Posted on 2019-08-06

2707 Melanoblast transcriptome analysis reveals novel pathways promoting melanoma metastasis

Marie, K. L.; Sassano, A.; Yang, H. H.; Michalowski, A. M.; Michael, H. T.; Guo, T.; Tsai, Y. C.; Weissman, A. M.; Lee, M. P.; Jenkins, L. M.; Zaidi, M. R.; Perez-Guijarro, E.; Day, C.-P.; Arnheiter, H.; Davis, S.; Meltzer, P. S.; Merlino, G.; Mishra, P. J.

10.1101/721712 — cancer biology — Posted on 2019-08-06

2708 Markov modelling of run length and velocity for molecular motors

Buchanan, J. L.; Gilbert, R. P.

10.1101/727636 — cell biology — Posted on 2019-08-06

2709 Vav1 is essential for HIF-1α activation in vascular response to ischemic stress

Min, Y.; Hong, J.; Wuest, T. R.; Lin, P. C.

10.1101/727677 — cancer biology — Posted on 2019-08-06

2710 WikiMedMap: Expanding the Phenotyping Mapping Toolbox Using Wikipedia

Sulieman, L.; Wu, P.; Denny, J.; Bastarache, L.

10.1101/727792 — bioinformatics — Posted on 2019-08-06

2711 NeuroGPU, software for NEURON modeling in GPU-based hardware

Ben-Shalom, R.; Athreya, N. S.; Cross, C.; Sanghevi, H.; Korngreen, A.; Bender, K. J.

10.1101/727560 — neuroscience — Posted on 2019-08-06

2712 GATA3 controls mitochondrial biogenesis in primary human CD4+ T cells during DNA damage

Callender, L. A.; Carroll, E. C.; Romano, L. E. L.; Chapple, J. P.; Akbar, A. N.; Henson, S. M.

10.1101/727479 — immunology — Posted on 2019-08-06

2713 Engineering of Chimeric Antigen Receptor T Cells with integrin αEβ7 Results in Augmented Therapeutic Efficacy against E-cadherin positive tumor

Sun, H.; He, S.; Meng, L.; Wang, Y.; Zhang, H.; Liu, Y.; Wang, J.; Tao, M.; Barta, S. K.; Dulaimi, E.; Fung, H.; Issa, J.-P. J.; Zheng, L.-Z.; Zhang, Y.

10.1101/727446 — immunology — Posted on 2019-08-06

2714 Measuring significant changes in chromatin conformation with ACCOST

Cook, K. B.; Le Roch, K. G.; Vert, J.-P.; Noble, W.

10.1101/727768 — genomics — Posted on 2019-08-06

2715 MitoImpute: A Snakemake pipeline for imputation of mitochondrial genetic variants

McInerney, T. W.; Fulton-Howard, B.; Patterson, C.; Paliwal, D.; Jermiin, L. S.; Patel, H. R.; Swerdlow, R. H.; Pa, J.; Goate, A. M.; Easteal, S.; Andrews, S. J.

10.1101/649293 — genomics — Posted on 2019-08-06

2716 Schizophrenia is characterized by age- and sex-specific effects on epigenetic aging

Ori, A. P.; Olde Loohuis, L. M.; Guintivano, J.; Hannon, E.; Dempster, E.; St. Clair, D.; Bass, N. J.; McQuillin, A.; Mill, J.; Sullivan, P. F.; Kahn, R. S.; Horvath, S.; Ophoff, R. A.

10.1101/727859 — genomics — Posted on 2019-08-06

2717 Comprehensive scanning mutagenesis of human retrotransposon LINE-1 identifies motifs essential for function

Adney, E. M.; Ochmann, M. T.; Sil, S.; Truong, D. M.; Mita, P.; Wang, X.; Kahler, D. J.; Fenyo, D.; Holt, L. J.; Boeke, J. D.

10.1101/721357 — genetics — Posted on 2019-08-06

2718 Educational Attainment Polygenic Score is Associated with Depressive Symptoms via Socioeconomic Status: A Gene-Environment-Trait Correlation

Avinun, R.

10.1101/727552 — genetics — Posted on 2019-08-06

2719 Genotype-by-environment interactions for seminal fluid expression and sperm competitive ability

Patlar, B.; Ramm, S. A.

10.1101/727685 — evolutionary biology — Posted on 2019-08-06

2720 Deficiency in the endocytic adaptor protein PHETA1/2 impairs renal and craniofacial development

Ates, K. M.; Wang, T.; Moreland, T.; Veeranan-Karmegam, R.; Anand, P.; Wenzel, W.; Kim, H.-G.; Wolfe, L. A.; Stephen, J. A.; Adams, D. R.; Markello, T.; Tifft, C. J.; Gahl, W. A.; Gonsalvez, G. B.; Malicdan, M. C.; Flanagan-Steet, H.; Pan, Y.

10.1101/727578 — developmental biology — Posted on 2019-08-06

2721 Accurate measures of translation efficiency and traffic using ribosome profiling

Szavits-Nossan, J.; Ciandrini, L.

10.1101/719302 — systems biology — Posted on 2019-08-06

2722 Temporal discrimination from the interaction between dynamic synapses and intrinsic subthreshold oscillations

Torres, J. J.; Baroni, F.; Latorre, R.; Varona, P.

10.1101/727735 — neuroscience — Posted on 2019-08-06

2723 Persistent Elevation of Electrical Pain Threshold following Continuous Theta Burst Stimulation over Primary Somatosensory Cortex in Humans

Rao, N.; Chen, Y.-T.; Ramirez, R.; Tran, J.; Li, S.; Parikh, P. J.

10.1101/724344 — neuroscience — Posted on 2019-08-06

2724 PCR-based detection of Helicobacter spp. in mice from different animal houses in Rio de Janeiro, Brazil

Matos-Rodrigues, G. E.; Masseron, C. C.; Silva, F. J. M. d.; Flajblat, M.; Moreira, L. O.; MARTINS, R. A. P.

10.1101/727420 — microbiology — Posted on 2019-08-06

2725 In Situ Transcriptome Accessibility Sequencing (INSTA-seq)

Furth, D.; Hatini, V.; Lee, J. H.

10.1101/722819 — genomics — Posted on 2019-08-06

2726 Genomic signatures of evolutionary rescue in bats surviving white-nose syndrome

Gignoux-Wolfsohn, S. A.; Pinsky, M.; Kerwin, K.; Herzog, C.; Hall, M.; Bennett, A.; Fefferman, N.; Maslo, B.

10.1101/470294 — evolutionary biology — Posted on 2019-08-06

2727 Maternal malnutrition impacts placental morphology and transport. An origin for poor offspring growth and vulnerability to disease.

Connor, K. L.; Kibschull, M.; Matysiak-Zablocki, E.; Nguyen, T. T.-T. N.; Matthews, S. G.; Lye, S. J.; Bloise, E.

10.1101/727404 — developmental biology — Posted on 2019-08-06

2728 Three dimensional nanoscopy of whole cells and tissues with in situ point spread function retrieval

Xu, F.; Ma, D.; MacPherson, K. P.; Liu, S.; Ye, B.; Wang, Y.; Cheng, B.; Kwok, T.; Yin, P.; Calve, S.; Landreth, G. E.; Huang, F.

10.1101/727354 — biophysics — Posted on 2019-08-06

2729 A Dual-sensing DNA Nanostructure with an Ultra-broad Detection Range

Kang, B.; Park, S. V.; Soh, H. T.; Oh, S. S.

10.1101/727610 — bioengineering — Posted on 2019-08-06

2730 Molecular signature of pruriceptive MrgprA3+ neurons

Xing, Y.; Chen, J.; Hilley, H.; Steele, H.; Yang, J.; Han, L.

10.1101/727396 — neuroscience — Posted on 2019-08-06

2731 ZIP-5/bZIP transcription factor regulation of folate metabolism is critical for aging axon regeneration

Lakhina, V.; McReynolds, M.; Grimes, D. T.; Rabinowitz, J. D.; Burdine, R. D.; Murphy, C. T.

10.1101/727719 — neuroscience — Posted on 2019-08-06

2732 Characterising the loss-of-function impact of 5’ untranslated region variants in 15,708 individuals

Whiffin, N.; Karczewski, K. J.; Zhang, X.; Chothani, S.; Smith, M. J.; Evans, D. G.; Roberts, A. M.; Quaife, N. M.; Schafer, S.; Rackham, O.; Alfoldi, J.; O'Donnell-Luria, A. H.; Francioli, L. C.; Genome Aggregation Database (gnomAD) Production Te, ; Genome Aggregation Database (gnomAD) Consortium, ; Cook, S. A.; Barton, P. J. R.; MacArthur, D. G.; Ware, J. S.

10.1101/543504 — genomics — Posted on 2019-08-06

2733 Evolved for success in novel environments: the round goby genome

Adrian-Kalchhauser, I.; Blomberg, A.; Larsson, T.; Musilova, Z.; Peart, C. R.; Pippel, M.; Hongroe Solbakken, M.; Suurvaeli, J.; Walser, J.-C.; Wilson, J. Y.; Alm Rosenblad, M.; Burguera, D.; Gutnik, S.; Michiels, N.; Toepel, M.; Pankov, K.; Schloissnig, S.; Winkler, S.

10.1101/708974 — ecology — Posted on 2019-08-06

2734 Context-dependent dynamics lead to the assembly of functionally distinct pitcher-plant microbiomes

Bittleston, L. S.; Gralka, M.; Leventhal, G. E.; Mizrahi, I.; Cordero, O. X.

10.1101/727701 — ecology — Posted on 2019-08-06

2735 R-peak detector stress test with a new noisy ECG database reveals significant performance differences amongst popular detectors

Porr, B.; Howell, L.

10.1101/722397 — bioengineering — Posted on 2019-08-06

2736 Convergent evolution of linked mating-type loci in basidiomycete fungi

Sun, S.; Coelho, M. A.; Heitman, J.; Nowrousian, M.

10.1101/626911 — evolutionary biology — Posted on 2019-08-06

2737 Heterogeneity in human hippocampal CaMKII transcripts reveals an allosteric role for the hub domain in activity regulation

Sloutsky, R.; Dziedzic, N.; Dunn, M. J.; Bates, R.; Torres-Ocampo, A. P.; Page, B.; Weeks, J. G.; Stratton, M. M.

10.1101/721589 — biochemistry — Posted on 2019-08-06

2738 Tau Accumulation via Reduced BAG3-mediated Autophagy Is Required for GGGGCC Repeat Expansion-Induced Neurodegeneration

Wen, X.; An, P.; Li, H.; Zhou, Z.; Sun, Y.; Wang, J.; Ma, L.; Lu, B.

10.1101/727008 — neuroscience — Posted on 2019-08-06

2739 Sex differences in maturation and attrition rate of adult born neurons in the hippocampus of rats

Yagi, S.; Splinter, J.; Tai, D.; Wong, S.; Galea, L.

10.1101/726398 — neuroscience — Posted on 2019-08-06

2740 Modular transcriptional programs separately define axon and dendrite connectivity

Kurmangaliyev, Y. Z.; Yoo, J.; LoCascio, S. A.; Zipursky, S. L.

10.1101/724633 — neuroscience — Posted on 2019-08-06

2741 Dating genomic variants and shared ancestry in population-scale sequencing data

Albers, P. K.; McVean, G.

10.1101/416610 — genomics — Posted on 2019-08-06

2742 Bacterial swarming reduces Proteus mirabilis and Vibrio parahaemolyticus cell stiffness and increases β-lactam susceptibility

Auer, G. K.; Oliver, P. M.; Rajendram, M.; Lin, T.-Y.; Yao, Q.; Jensen, G. J.; Weibel, D. B.

10.1101/275941 — microbiology — Posted on 2019-08-06

2743 Single-cell proteomics reveals downregulation of TMSB4X to drive actin release for stereocilia assembly

Zhu, Y.; Scheibinger, M.; Ellwanger, D. C.; Krey, J. F.; Choi, D.; Kelly, R. T.; Heller, S.; Barr-Gillespie, P. G.

10.1101/727412 — cell biology — Posted on 2019-08-06

2744 SMART: An open source extension of WholeBrain for iDISCO+ LSFM intact mouse brain registration and segmentation

Jin, M.; Nguyen, J. D.; Weber, S. J.; Mejias-Aponte, C. A.; Madangopal, R.; Golden, S. A.

10.1101/727529 — neuroscience — Posted on 2019-08-06

2745 Oxygen tension regulates lysosomal activation and receptor tyrosine kinase degradation

Hong, J.; Wuest, T. R.; Min, Y.; Lin, P. C.

10.1101/727495 — cell biology — Posted on 2019-08-06

2746 Stanford Accelerated Intelligent Neuromodulation Therapy for Treatment-Resistant Depression (SAINT-TRD).

Cole, E.; Stimpson, K. H.; Bentzley, B. S.; Gulser, M.; Cherian, K.; Tischler, C.; Nejad, R.; Pankow, H.; Choi, E.; Aaron, H.; Espil, F. M.; Pannu, J.; Xiao, X.; Duvio, D.; Solvason, H. B.; Hawkins, J.; Guerra, A.; Jo, B.; Raj, K. S.; DeBattista, C.; Keller, J.; Schatzberg, A. F.; Sudheimer, K. D.; Williams, N. R.

10.1101/581280 — clinical trials — Posted on 2019-08-06

2747 Drp1-mediated mitochondrial fission regulates calcium and F-actin dynamics during wound healing

Ponte, S.; Carvalho, L.; Gagliardi, M.; Campos, I.; Oliveira, P. J.; Jacinto, A.

10.1101/727628 — cell biology — Posted on 2019-08-06

2748 The concentration of heterotrophic growth substrates in culture medium is a crucial determinant of the culturability of subsurface soil microbes

Bartelme, R.; Custer, J. M.; Dupont, C.; Espinoza, J. L.; Torralba, M.; Khalili, B.; Carini, P.

10.1101/726661 — microbiology — Posted on 2019-08-06

2749 CD200 immune checkpoint reversal at the site of tumor vaccine inoculation: A novel approach to glioblastoma immunotherapy

Xiong, Z.; Ampudia-Mesias, E.; Pluhar, G. E.; Rathe, S. K.; Largaespada, D. A.; Sham, Y. Y.; Moertel, C. L.; Olin, M. R.

10.1101/726778 — cancer biology — Posted on 2019-08-06

2750 The critical role of mental imagery in human emotion: insights from Aphantasia.

Wicken, M.; Keogh, R.; Pearson, J.

10.1101/726844 — neuroscience — Posted on 2019-08-06

2751 Inter-subject representational similarity analysis reveals individual variations in affective experience when watching erotic movies

Chen, P.-H. A.; Jolly, E.; Cheong, J. H.; Chang, L. J.

10.1101/726570 — neuroscience — Posted on 2019-08-06

2752 Trimester-specific Zika virus infection affects placental responses in women

Lum, F. M.; Narang, V.; Hue, S.; Jie, C.; McGovern, N.; Rajarethinam, R.; Tan, J.; Amrun, S. N.; Chan, Y. H.; Lee, C. Y. P.; Chua, T. K.; Yee, W. X.; Yeo, N. K. W.; Tan, T. C.; Xuan, L.; Haldenby, S.; Leo, Y. S.; Ginhoux, F.; Chan, J.; Hiscox, J.; Chong, C. Y.; Ng, L.

10.1101/727081 — immunology — Posted on 2019-08-06

2753 Cholesterol is a strong promoter of an α-Synuclein membrane binding mode that accelerates oligomerization

Jakubec, M.; Bariås, E.; Furse, S.; Govasli, M. L.; George, V.; Turcu, D.; Iashchishyn, I.; Morozova-Roche, L. A.; Halskau, Øyvind

10.1101/725762 — molecular biology — Posted on 2019-08-06

2754 Novel quinolone resistance determinant, qepA8, in Shigella flexneri isolated in the United States, 2016

Webb, H. E.; Tagg, K. A.; Chen, J. C.; Kim, J.; Lindsey, R. L.; Francois Watkins, L.; Karp, B. E.; Sugawara, Y.; Folster, J. P.

10.1101/726950 — microbiology — Posted on 2019-08-06

2755 Isolation of an archaeon at the prokaryote-eukaryote interface

10.1101/726976 — microbiology — Posted on 2019-08-06

2756 High-density genetic linkage map construction and white rot resistance QTL mapping for Vitis based on restriction site-associated DNA sequencing

Su, K.; Guo, Y.; Zhong, W.; Lin, H.; Liu, Z.; Li, K.; Guo, X.

10.1101/726687 — genetics — Posted on 2019-08-06

2757 Alcohol Drinking Exacerbates Neural and Behavioral Pathology in the 3xTg-AD Mouse Model of Alzheimer’s Disease

Hoffman, J. L.; Faccidomo, S.; Kim, M.; Taylor, S. M.; Agoglia, A. E.; May, A. M.; Smith, E. N.; Wong, L.; Hodge, C. W.

10.1101/726307 — neuroscience — Posted on 2019-08-06

2758 Hot-spots and their contribution to the self-assembly of the viral capsid: in-silico prediction and analysis

Diaz-Valle, A.; Falcon-Gonzalez, J. M.; Carrillo-Tripp, M.

10.1101/723023 — biophysics — Posted on 2019-08-06

2759 Light suppresses the acoustically prompted predator-avoidance behaviour in moths

Huegel, T.; Goerlitz, H. R.

10.1101/727248 — animal behavior and cognition — Posted on 2019-08-06

2760 Bayesian inference of reassortment networks reveals fitness benefits of reassortment in human influenza viruses

Müller, N. F.; Stolz, U.; Dudas, G.; Stadler, T.; Vaughan, T.

10.1101/726042 — evolutionary biology — Posted on 2019-08-06

2761 Correlates of hybridization in plants

Mitchell, N.; Campbell, L. G.; Ahern, J. R.; Paine, K. C.; Giroldo, A. B.; Whitney, K. D.

10.1101/726323 — evolutionary biology — Posted on 2019-08-06

2762 Patterns of phenotypic plasticity among populations of three Mediterranean pine species and implications for evolutionary responses to climate change

Vizcaino-Palomar, N.; Fady, B.; Alia, R.; Raffin, A.; Mutke, S.; Benito Garzon, M.

10.1101/716084 — ecology — Posted on 2019-08-06

2763 Uncoating of COPII from ER exit site membranes precedes cargo accumulation and membrane fission

Shomron, O.; Nevo-Yassaf, I.; Aviad, T.; Yaffe, Y.; Zahavi, E. E.; Dukhovny, A.; Perlson, E.; Brodsky, I.; Yeheskel, A.; Pasmanik-Chor, M.; Mironov, A.; Beznoussenko, G. V.; Mironov, A. A.; Sklan, E. H.; Patterson, G. H.; Yonemura, Y.; Kaether, C.; Hirschberg, K.

10.1101/727107 — cell biology — Posted on 2019-08-06

2764 Trans-epithelial Fluid Pumping Performance of Renal Epithelial Cells and Mechanics of Cystic Expansion

Choudhury, M. I.; Li, Y.; Mistriotis, P.; Dixon, E. E.; Yang, J.; Maity, D.; Walker, R.; Benson, M.; Martin, L.; Koroma, F.; Qian, F.; Konstantopoulos, K.; Woodward, O. M.; Sun, S. X.

10.1101/727313 — biophysics — Posted on 2019-08-06

2765 Enviromics in breeding: applications and perspectives on envirotypic-assisted selection

Resende, R. T.; Piepho, H.-P.; Silva-Junior, O. B.; Silva, F. F.; Resende, M. D. V.; Grattapaglia, D.

10.1101/726513 — plant biology — Posted on 2019-08-06

2766 Resilience to multiple stressors in an aquatic plant and its microbiome

O'Brien, A.; Yu, Z. H.; Luo, D.-y.; Laurich, J.; Passeport, E.; Frederickson, M.

10.1101/726653 — plant biology — Posted on 2019-08-06

2767 From phages to mammalian viruses: viral receptors play a central role in protein-protein interaction network

Yu, F.; Zhang, Z.; Zou, Y.; Qiu, Y.; Wu, A.; Jiang, T.; Peng, Y.

10.1101/727024 — microbiology — Posted on 2019-08-06

2768 Dynamics of Livestock-Associated Methicillin Resistant Staphylococcus aureus in pig farms networks: insight from mathematical modeling and French data

Bastard, J.; Andraud, M.; Chauvin, C.; Glaser, P.; Opatowski, L.; Temime, L.

10.1101/727032 — microbiology — Posted on 2019-08-06

2769 Cells reshape habitability of temperature by secreting antioxidants to help each other replicate and avoid population extinction

Laman Trip, D. S.; Youk, H.

10.1101/726463 — systems biology — Posted on 2019-08-06

2770 Gram-positive and Gram-negative Bacteria Share Common Principles to Coordinate Growth and the Cell Cycle at the Single-cell Level

Sauls, J. T.; Cox, S. E.; Doh, Q.; Castillo, V.; Ghulam-Jelani, Z.; Jun, S.

10.1101/726596 — systems biology — Posted on 2019-08-06

2771 Leaf anatomy is not correlated to CAM function in a C3+CAM hybrid species, Yucca gloriosa

Heyduk, K.; Ray, J. N.; Leebens-Mack, J.

10.1101/726737 — plant biology — Posted on 2019-08-06

2772 Influence Of Salt Stress On The flg22 Induced ROS Production In Arabidopsis thaliana Leaves

Amrahov, N. R.; Janda, M.; Mammadov, Z. M.; Valentova, O.; Burketova, L.; Quliyev, A. A.

10.1101/727040 — physiology — Posted on 2019-08-06

2773 Sex-associated differences in cytomegalovirus prevention: Prophylactic strategy is associated with a strong kidney function impairment in female renal transplant patients

Blazquez-Navarro, A.; Dang-Heine, C.; Bauer, C.; Wittenbrink, N.; Wolk, K.; Sabat, R.; Witzke, O.; Westhoff, T. H.; Sawitzki, B.; Reinke, P.; Thomusch, O.; Hugo, C.; Babel, N.; Or-Guil, M.

10.1101/726968 — pharmacology and toxicology — Posted on 2019-08-06

2774 Blood Flow Dynamics Has a Major Influence on the State of Circulating Tumor Cells

Cognart, H. A.; Viovy, J.-L.; Villard, C.

10.1101/722306 — cancer biology — Posted on 2019-08-06

2775 Mutant GT198 in angiogenesis as a common origin of human prostate and bladder cancers

Zhang, L.; Liu, Y.; Cheng, L.; Zhao, C.; Ko, L.

10.1101/726679 — pathology — Posted on 2019-08-06

2776 Early Tetrapodomorph Biogeography: Controlling for Fossil Record Bias in Macroevolutionary Analyses

Gardner, J. D.; Surya, K.; Organ, C. L.

10.1101/726786 — paleontology — Posted on 2019-08-06

2777 Neural Anatomy and Optical Microscopy (NAOMi) Simulation for evaluating calcium imaging methods

Charles, A. S.; Song, A.; Gauthier, J. L.; Pillow, J. W.; Tank, D. W.

10.1101/726174 — neuroscience — Posted on 2019-08-06

2778 Disentangling competence from performance in behavioral measures of learning: A lesson for cognitive neuroscience

Vekony, T.; Marossy, H.; Must, A.; Vecsei, L.; Janacsek, K.; Nemeth, D.

10.1101/726315 — neuroscience — Posted on 2019-08-06

2779 Joy division: Reward prediction errors create event boundaries in memory

Rouhani, N.; Norman, K. A.; Niv, Y.; Bornstein, A. M.

10.1101/725440 — neuroscience — Posted on 2019-08-06

2780 Stimulation-specific information is represented as local activity patterns across the brain

Sadoun, A.; Chauhan, T.; Mameri, S.; Zhang, Y.; Barone, P.; Deguine, O.; Strelnikov, K.

10.1101/726414 — neuroscience — Posted on 2019-08-06

2781 Cytochrome P450 26b1-mediated specification of vestibular striola and central zones is required for transient responses in linear acceleration

Ono, K.; Keller, J.; Ramirez, O. L.; Garrido, A. G.; Zobeiri, O.; Chang, V.; Vijayakumar, S.; Ayiotis, A.; Duester, G.; Santina, C. C. D.; Jones, S. M.; Cullen, K.; Eatock, R. A.; Wu, D. K.

10.1101/726232 — neuroscience — Posted on 2019-08-06

2782 Myelin and nodal plasticity modulate action potential conduction in the adult mouse brain

Cullen, C. L.; Pepper, R. E.; Clutterbuck, M. T.; Pitman, K. A.; Oorschot, V.; Auderset, L.; Tang, A. D.; Ramm, G.; Emery, B.; Rodger, J.; Jolivet, R. B.; Young, K. M.

10.1101/726760 — neuroscience — Posted on 2019-08-06

2783 Altered visual population receptive fields in human albinism

Alvarez, I.; Smittenaar, R.; Handley, S. E.; Liasis, A.; Sereno, M. I.; Schwarzkopf, D. S.; Clark, C. A.

10.1101/726141 — neuroscience — Posted on 2019-08-06

2784 Taste quality representation in the human brain

Avery, J. A.; Liu, A. G.; Ingeholm, J. E.; Riddell, C. D.; Gotts, S. J.; Martin, A.

10.1101/726711 — neuroscience — Posted on 2019-08-06

2785 Megaloneurite, a giant neurite of vasoactive intestinal peptide and nitric oxide synthase in the aged dog and identification by human sacral spinal cord

Li, Y.; Hou, W.; Jia, Y.; Rao, C.; Wei, Z.; Xu, X.; Li, H.; Li, F.; Wang, X.; Zhang, T.; Sun, J.; Tan, H.

10.1101/726893 — neuroscience — Posted on 2019-08-06

2786 DYNLRB1 is Essential for Dynein Mediated Transport and Neuronal Survival

Terenzio, M.; Di Pizio, A.; Rishal, I.; Marvaldi, L.; Di Matteo, P.; Kawaguchi, R.; Coppola, G.; Schiavo, G.; Fisher, E. M. C.; Fainzilber, M.

10.1101/727016 — neuroscience — Posted on 2019-08-06

2787 Brain-wide visual habituation networks in wild type and fmr1 zebrafish

Marquez-Legorreta, E.; Constantin, L.; Piber, M.; Favre-Bulle, I. A.; Taylor, M.; Vanwalleghem, G.; Scott, E.

10.1101/722074 — neuroscience — Posted on 2019-08-06

2788 Biased connectivity of brain-wide inputs to ventral subiculum output neurons

Wee, R. W.; MacAskill, A. F.

10.1101/726406 — neuroscience — Posted on 2019-08-06

2789 Distinct neural mechanisms of social orienting and mentalizing revealed by independent measures of neural and eye movement typicality

Ramot, M.; Walsh, C.; Reimann, G. E.; Martin, A.

10.1101/726356 — neuroscience — Posted on 2019-08-06

2790 Structure of the host cell recognition and penetration machinery of a Staphylococcus aureus bacteriophage

Kizziah, J. L.; Manning, K. A.; Dearborn, A. D.; Dokland, T.

10.1101/721746 — microbiology — Posted on 2019-08-06

2791 Global genomic population structure of Clostridioides difficile

Frentrup, M.; Zhou, Z.; Steglich, M.; Meier-Kolthoff, J. P.; Goker, M.; Riedel, T.; Bunk, B.; Sproer, C.; Overmann, J.; Blaschitz, M.; Indra, A.; von Muller, L.; Kohl, T. A.; Niemann, S.; Seyboldt, C.; Klawonn, F.; Kumar, N.; Lawley, T. D.; Garcia-Fernandez, S.; Canton, R.; del Campo, R.; Zimmermann, O.; Gross, U.; Achtman, M.; Nubel, U.

10.1101/727230 — microbiology — Posted on 2019-08-06

2792 Regulation of neutrophil NADPH oxidase by PSTPIP2 affects bone damage in murine autoinflammatory osteomyelitis

Kralova, J.; Drobek, A.; Prochazka, J.; Spoutil, F.; Glatzova, D.; Borna, S.; Pokorna, J.; Skopcova, T.; Angelisova, P.; Gregor, M.; Kovarik, P.; Sedlacek, R.; Brdicka, T.

10.1101/727222 — immunology — Posted on 2019-08-06

2793 In-host population dynamics of M. tuberculosis during treatment failure

Vargas, R.; Freschi, L.; Marin, M.; Epperson, E.; Smith, M.; Oussenko, I.; Durbin, D.; Strong, M.; Salfinger, M.; Farhat, M. R.

10.1101/726430 — genomics — Posted on 2019-08-06

2794 Effects of pathogenic CNVs on biochemical markers: a study on the UK Biobank

Bracher-Smith, M.; Kendall, K. M.; Rees, E.; Einon, M.; O'Donovan, M.; Owen, M. J.; Kirov, G.

10.1101/723270 — genomics — Posted on 2019-08-06

2795 Developmental regulation of Canonical and small ORF translation from mRNA

Patraquim, P.; Pueyo, J.; Mumtaz, M. A.; Aspden, J.; Couso, J. P.

10.1101/727339 — genomics — Posted on 2019-08-06

2796 Polygenic and clinical risk scores and their impact on age at onset of cardiometabolic diseases and common cancers

Mars, N. J.; Koskela, J. T.; Ripatti, P.; Kiiskinen, T. T. J.; Havulinna, A. S.; Lindbohm, J. V.; Ahola-Olli, A.; Kurki, M.; Karjalainen, J.; Palta, P.; FinnGen, ; Neale, B. M.; Daly, M.; Salomaa, V.; Palotie, A.; Widen, E.; Ripatti, S.

10.1101/727057 — genomics — Posted on 2019-08-06

2797 Biological Pathways and Gene Networks Link Inflammation and Vascular Remodeling to Both Heart Failure with Preserved and Reduced Ejection Fraction in Women across Ethnicities

Liu, Q.; Chan, K. H. K.; Morrison, A. R.; McGarvey, S. T.; Luo, X.; Wilson, J. G.; Correa, A.; Reiner, A. P.; Li, J.; Liu, S.; Wu, W.-C.

10.1101/726208 — genetics — Posted on 2019-08-06

2798 The wheat Seven in Absentia gene is associated with increases in biomass and yield in hot climates

Thomelin, P.; Bonneau, J.; Brien, C.; Suchecki, R.; Baumann, U.; Kalambettu, P.; Langridge, P.; Tricker, P. J.; Fleury, D.

10.1101/726802 — genetics — Posted on 2019-08-06

2799 Genomic assessment of local adaptation in dwarf birch to inform assisted gene flow

Borrell, J. S.; Zohren, J.; Nichols, R. A.; Buggs, R. J. A.

10.1101/727156 — evolutionary biology — Posted on 2019-08-06

2800 A Vector Representation of DNA Sequences Using Locality Sensitive Hashing

Shi, L.; Chen, B.

10.1101/726729 — bioinformatics — Posted on 2019-08-06

2801 Highly accessible translation initiation sites are predictive of successful heterologous protein expression

Bhandari, B. K.; Lim, C. S.; Gardner, P. P.

10.1101/726752 — bioinformatics — Posted on 2019-08-06

2802 Metadata-Guided Visual Representation Learning for Biomedical Images

Spiegel, S.; Hossain, I.; Ball, C.; Zhang, X.

10.1101/725754 — bioinformatics — Posted on 2019-08-06

2803 projectR: An R/Bioconductor package for transfer learning via PCA, NMF, correlation, and clustering

Sharma, G.; Colantuoni, C.; Goff, L. A.; Stein-O'Brien, G. L.; Fertig, E.

10.1101/726547 — bioinformatics — Posted on 2019-08-06

2804 Unraveling the genetic structure of the coconut scale insect pest (Aspidiotus rigidus Reyne) outbreak populations in the Philippines

Serrana, J.; Ishitani, N.; Carvajal, T.; Almarinez, B. J.; Barrion, A.; Amalin, D.; Watanabe, K.

10.1101/726919 — genetics — Posted on 2019-08-06

2805 Structural basis for transcription activation by Crl through tethering of σS and RNA polymerase

Cartagena, A. J.; Banta, A. B.; Sathyan, N.; Ross, W.; Gourse, R. L.; Campbell, E. A.; Darst, S. A.

10.1101/726851 — biophysics — Posted on 2019-08-06

2806 VHUT-cryo-FIB, a method to fabricate frozen-hydrated lamella of tissue specimen for in situ cryo-electron tomography

Zhang, J.; Zhang, D.; Sun, L.; Ji, G.; Huang, X.; Niu, T.; Sun, F.

10.1101/727149 — biophysics — Posted on 2019-08-06

2807 Cross-Species association statistics for genome-wide studies of host and parasite polymorphism data

Maerkle, H.; Tellier, A.; John, S.

10.1101/726166 — evolutionary biology — Posted on 2019-08-06

2808 Hot-spots and their contribution to the self-assembly of the viral capsid: in-vitro validation

Valdez-Lara, A. G.; Andrade-Medina, M.; Aleman-Vilis, J. A.; Perez-Montoya, A. A.; Pineda-Aguilar, N.; Martinez-Guerra, E.; Gaytan, P.; Carrillo-Tripp, M.

10.1101/724146 — biophysics — Posted on 2019-08-06

2809 Accuracy of different modalities of reaction time testing: Implications for online cognitive assessment tools.

Holden, J.; Francisco, E.; Lensch, R.; Tommerdahl, A.; Kirsch, B.; Zai, L.; Dennis, R.; Tommerdahl, M.

10.1101/726364 — bioengineering — Posted on 2019-08-06

2810 Methyl-Metabolite Depletion Elicits Adaptive Responses to Support Heterochromatin Stability and Epigenetic Persistence

Haws, S. A.; Yu, D.; Ye, C.; Wille, C. K.; Nguyen, L. C.; Krautkramer, K. A.; Tomasiewicz, J. L.; Yang, S. E.; Miller, B. R.; Liu, W. H.; Igarashi, K.; Sridharan, R.; Tu, B. P.; Cryns, V. L.; Lamming, D. W.; Denu, J. M.

10.1101/726448 — biochemistry — Posted on 2019-08-06

2811 The effect of population bottleneck size and selective regime on genetic diversity and evolvability in bacteria

Wein, T.; Dagan, T.

10.1101/726158 — evolutionary biology — Posted on 2019-08-06

2812 Intramolecular regulation of anillin during cytokinesis

Beaudet, D.; Pham, N. P.; Skaik, N.; Piekny, A.

10.1101/726471 — cell biology — Posted on 2019-08-06

2813 Warm Temperatures, Cool Sponges: The Effect of Increased Temperatures on the Antarctic Sponge Isodictya sp.

Gonzalez-Aravena, M.; Kenny, N. J.; Osorio, M.; Font, A.; Riesgo, A.; Cardenas, C.

10.1101/416677 — genomics — Posted on 2019-08-06

2814 Pharyngeal motor cortex grey matter abnormalities and retinal photoreceptor layer dysfunction in macaques exposed to Zika virus in utero

Koenig, M. R.; Razo, E.; Mitzey, A.; Semler, M. R.; Stewart, L. M.; Breitbach, M. E.; Newman, C. M.; Dudley, D. M.; Weiler, A. M.; Rybarczyk, S.; Bach, K. M.; Mohns, M. M.; Simmons, H. A.; Mejia, A.; Dennis, M.; Teixeira, L. B. C.; Schotzko, M. L.; Nork, T. M.; Rasmussen, C. A.; Katz, A.; Hou, J.; Hartman, A.; Ver Hoeve, J.; Kim, C.; Schneider, M. L.; Ausderau, K.; Kohn, S.; Jaeger, A. S.; Aliota, M. T.; Salamat, M. S.; Hayes, J. M.; Schultz-Darken, N.; Eickhoff, J.; Antony, K. M.; Noguchi, K.; Zeng, X.; Permar, S.; Ikonomidou, C.; Prabhakaran, V.; Capuano, S.; Friedrich, T. C.; Golos, T. G.;

10.1101/726018 — microbiology — Posted on 2019-08-06

2815 Axon-like protrusions promote small cell lung cancer migration and metastasis

Yang, D.; Cai, H.; Qu, F.; Chuang, C.-H.; Lim, J. S.; Jahchan, N.; Grüner, B. M.; Kong, C.; Oudin, M.; Winslow, M.; Sage, J.

10.1101/726026 — cancer biology — Posted on 2019-08-06

2816 Phylo-comparative analyses reveal the dual role of drift and selection in reproductive character displacement.

Saglam, I. K.; Miller, M.; O'Rourke, S.; Caglar, S. S.

10.1101/610857 — evolutionary biology — Posted on 2019-08-06

2817 VARIATIONS IN THE COVERAGE OF BIOLOGICAL SOIL CRUSTS ALONG A GRADIENT OF ARIDITY IN THE CENTER-WEST OF ARGENTINA

Navas Romero, A. L.; Herrera Moratta, M. A.; Navas Romero, B.; Rodriguez, R.; Martinez Carretero, E. A.

10.1101/725986 — ecology — Posted on 2019-08-06

2818 In vitro dimerization of human RIO2 kinase

Maurice, F.; Perebaskine, N.; Thore, S.; Fribourg, S.

10.1101/553800 — biochemistry — Posted on 2019-08-06

2819 Binaural summation of amplitude modulation involves weak interaural suppression

Baker, D.; Vilidaite, G.; McClarnon, E.; Valkova, E.; Bruno, A.; Millman, R.

10.1101/278192 — neuroscience — Posted on 2019-08-06

2820 Novel tumor suppressor roles for GZMA and RASGRP1 in dissemination of both Theileria annulata-transformed macrophages and human B-lymphoma cells

Rchiad, Z.; Haidar, M.; Ansari, H. R.; Tajeri, S.; Mfarrej, S.; Ben Rached, F.; Kaushik, A.; Langsley, G.; Pain, A.

10.1101/338160 — molecular biology — Posted on 2019-08-06

2821 Interplay of primary bovine lymphocytes and Mycobacterium avium subsp. paratuberculosis shows distinctly different proteome changes and immune pathways in host-pathogen interaction

Kleinwort, K. J. H.; Hauck, S. M.; Degroote, R. L.; Scholz, A. M.; Hoelzel, C.; Maertlbauer, E. P.; Deeg, C. A. A.

10.1101/578187 — immunology — Posted on 2019-08-06

2822 Stochastic gene expression influences the selection of antibiotic resistance mutations

Sun, L.; Ashcroft, P.; Ackermann, M.; Bonhoeffer, S.

10.1101/563015 — evolutionary biology — Posted on 2019-08-06

2823 Spatial and temporal variation in small mammal abundance and diversity under protection, pastoralism and agriculture in the Serengeti Ecosystem, Tanzania

Shilereyo, M. T.; Magige, F. J.; Ogutu, J. O.; Roskaft, E.

10.1101/727206 — ecology — Posted on 2019-08-06

2824 Predictive factors of response to electrochemotherapy in canine oral malignant melanoma

Tellado, M. N.; Maglietti, F. H.; Michinski, S. D.; Marshall, G. R.; Signori, E.

10.1101/727164 — cancer biology — Posted on 2019-08-06

2825 Using QSAR for predictions in drug delivery

Rivera-Delgado, E.; Xin, A.; von Recum, H.

10.1101/727172 — bioengineering — Posted on 2019-08-06

2826 Title - Effects of Gamma Irradiation Against Mating Competitiveness of Male Culex quinquefasciatus (Diptera:Culicidae) in Laboratory

ramadhani, t.; Hadi, U. K.; Soviana, S.; Irawati, Z.; Sunaryo, S.; Rahayu, A.; Prastawa, A.; A, M.

10.1101/727198 — bioengineering — Posted on 2019-08-06

2827 Bayesian inference and comparison of stochastic transcription elongation models

Douglas, J.; Kingston, R.; Drummond, A.

10.1101/499277 — molecular biology — Posted on 2019-08-05

2828 The meiotic recombination landscape of Drosophila virilis is robust to mitotic damage during hybrid dysgenesis

Hemmer, L. W.; Dias, G.; Smith, B.; Van Vaerenberghe, K.; Howard, A.; Bergman, C. M.; Blumenstiel, J. P.

10.1101/342824 — genetics — Posted on 2019-08-05

2829 Polygenic selection drives the evolution of convergent transcriptomic landscapes across continents within a Nearctic sister-species complex.

Rougeux, C.; Gagnaire, P.-A.; Praebel, K.; Seehausen, O.; Bernatchez, L.

10.1101/311464 — evolutionary biology — Posted on 2019-08-05

2830 The two-step chemosensory system underlying the oligophagy of silkworm larvae

Tsuneto, K.; Endo, H.; Shii, F.; Sasaki, K.; Nagata, S.; Sato, R.

10.1101/719344 — ecology — Posted on 2019-08-05

2831 Modulation of β-catenin levels is critical for cranial neural crest patterning and dispersal into first pharyngeal arch

Javali, A.; Lakshmanan, V.; Palakodeti, D.; Sambasivan, R.

10.1101/726299 — developmental biology — Posted on 2019-08-05

2832 A Fyn - specific biosensor reveals localized, pulsatile kinase activity and spatially regulated signaling crosstalk

Mukherjee, A.; Singh, R.; Udayan, S.; Biswas, S.; Pothula, P.; Manmadhan, S.; George, G.; Dilip Kumar, S.; Das, R.; Rao, B. M.; Gulyani, A.

10.1101/726133 — cell biology — Posted on 2019-08-05

2833 Cyclin B1 scaffolds MAD1 at the corona to activate the spindle assembly checkpoint

Allan, L. A.; Reis, M.; Liu, Y.; Huis in 't Veld, P.; Kops, G. J.; Musacchio, A.; Saurin, A. T.

10.1101/726224 — cell biology — Posted on 2019-08-05

2834 Nrf1 is endowed with a dominant tumor-repressing effect onto the Wnt/β-Catenin-dependent and -independent signaling networks in the human liver cancer

Chen, J.; Wang, M.; Ru, X.; Xiang, Y.; Ren, Y.; Liu, X.; Qiu, L.; Zhang, Y.

10.1101/726349 — cancer biology — Posted on 2019-08-05

2835 Altered brain-wide auditory networks in fmr1-mutant larval zebrafish

Constantin, L.; Poulsen, R.; Favre-Bulle, I. A.; Taylor, M.; Sun, B.; Goodhill, G.; Vanwalleghem, G.; Scott, E.

10.1101/722082 — neuroscience — Posted on 2019-08-05

2836 Time-lapse single-cell transcriptomics reveals modulation of histone H3 for dormancy breaking

Tsuyuzaki, H.; Hosokawa, M.; Arikawa, K.; Yoda, T.; Okada, N.; Takeyama, H.; Sato, M.

10.1101/720680 — cell biology — Posted on 2019-08-05

2837 Quantitative Cytogenetics Reveals the Longitudinal Architecture of Meiotic Chromosome Axes

Woglar, A.; Yamaya, K.; Roelens, B.; Boettiger, A.; Kohler, S.; Villeneuve, A. M.

10.1101/724997 — cell biology — Posted on 2019-08-05

2838 Effects of two centuries of global environmental variation on phenology and physiology of Arabidopsis thaliana

DeLeo, V. L.; Menge, D. N. L.; Hanks, E. M.; Juenger, T. E.; Lasky, J. R.

10.1101/424242 — ecology — Posted on 2019-08-05

2839 Early transcriptional landscapes of Chlamydia trachomatis-infected epithelial cells at single cell resolution

Hayward, R. J.; Marsh, J. W.; Humphrys, M. S.; Huston, W. M.; Myers, G. S. A.

10.1101/724641 — systems biology — Posted on 2019-08-05

2840 Developmental Genome-Wide DNA Methylation Asymmetry Between Mouse Placenta and Embryo

Legault, L.-M.; Doiron, K.; Lemieux, A.; Caron, M.; Chan, D.; Lopes, F. L.; Bourque, G.; Sinnett, D.; McGraw, S.

10.1101/718247 — developmental biology — Posted on 2019-08-05

2841 Integrative x-ray structure and molecular modeling for the rationalization of procaspase-8 inhibitor potency and selectivity

Xu, J. H.; Eberhardt, J.; Hill-Payne, B.; Gonzalez-Paez, G. E.; Castellon, J. O.; Cravatt, B. F.; Forli, S.; Wolan, D. W.; Backus, K. M.

10.1101/721951 — biochemistry — Posted on 2019-08-05

2842 What the odor is not: Estimation by elimination

Singh, V.; Tchernookov, M.; Balasubramanian, V.

10.1101/568626 — neuroscience — Posted on 2019-08-05

2843 The Integrator complex terminates promoter-proximal transcription at protein-coding genes

Elrod, N. D.; Henriques, T.; Huang, K.-L.; Tatomer, D. C.; Wilusz, J. E.; Wagner, E. J.; Adelman, K.

10.1101/725507 — genomics — Posted on 2019-08-05

2844 Semi-blind sparse affine spectral unmixing of autofluorescence-contaminated micrographs

Rossetti, B. J.; Wilbert, S. A.; Mark Welch, J. L.; Borisy, G. G.; Nagy, J. G.

10.1101/529008 — bioinformatics — Posted on 2019-08-05

2845 CODC: A copula based model to identify differential coexpression.

Ray, S.; Lall, S.; Bandyopadhyay, S.

10.1101/725887 — bioinformatics — Posted on 2019-08-05

2846 Measurement of Atom Resolvability in CryoEM Maps with Q-scores

Pintilie, G.; Zhang, K.; Su, Z.; Li, S.; Schmid, M. F.; Chiu, W.

10.1101/722991 — biochemistry — Posted on 2019-08-05

2847 Taxonomic and functional dynamics of lung microbiome in cystic fibrosis patients chronically infected with Pseudomonas aeruginosa

Bacci, G.; Taccetti, G.; Dolce, D.; Armanini, F.; Segata, N.; Di Cesare, F.; Lucidi, V.; Fiscarelli, E. V.; Morelli, P.; Casciaro, R.; Negroni, A.; Mengoni, A.; Bevivino, A.

10.1101/609057 — microbiology — Posted on 2019-08-05

2848 Crif1 Promotes Osteoporosis in Mice after Radiation

Xiang, L.; Chen, L.; Xiang, Y.; Li, F.; Zhang, X.; Xiao, Y.; Zou, L.; Zhong, J. F.; Li, S. C.; Ran, Q.; Li, Z.

10.1101/725408 — cell biology — Posted on 2019-08-05

2849 Human body prediction of size and shape: a hormonal framework

van Vugt, J.

10.1101/722777 — cell biology — Posted on 2019-08-05

2850 The structure of a highly conserved picocyanobacterial protein reveals a Tudor domain with an RNA binding function

Bauer, K. M.; Dicovitsky, R.; Pellegrini, M.; Zhaxybayeva, O.; Ragusa, M. J.

10.1101/542068 — biochemistry — Posted on 2019-08-05

2851 Atrial fibrillation associated common risk variants in SYNE2 lead to lower expression of nesprin-2α1 and increased nuclear stiffness

Liu, N.; Hsu, J.; Mahajan, G.; Han, S.; Barnard, J.; Van Wagoner, D. R.; Kothapalli, C. R.; Chung, M. K.; Smith, J. D.

10.1101/708057 — genomics — Posted on 2019-08-05

2852 The evolution of paternal care: a role for microbes?

Gurevich, Y.; Lewin-Epstein, O.; Hadany, L.

10.1101/725192 — evolutionary biology — Posted on 2019-08-05

2853 When be Temperate: On the Fitness Benefits of Lysis vs. Lysogeny

Li, G.; Cortez, M. H.; Weitz, J. S.

10.1101/709758 — ecology — Posted on 2019-08-05

2854 Energy landscape analysis of ecological communities elucidates the phase space of community assembly dynamics

Suzuki, K.; Nakaoka, S.; Fukuda, S.; Masuya, H.

10.1101/709956 — ecology — Posted on 2019-08-05

2855 Evolutionary dynamics of microbial communities in bioelectrochemical systems.

Szydlowski, L.; Sorokin, A.; Vasieva, O.; Fedorovich, V.; Goryanin, I.

10.1101/725580 — systems biology — Posted on 2019-08-05

2856 Crocodylomorph cranial shape evolution and its relationship with body size and ecology

Godoy, P. L.

10.1101/724609 — paleontology — Posted on 2019-08-05

2857 Organoid-derived Duodenum Intestine-Chip for preclinical drug assessment in a human relevant system

Kasendra, M.; Luc, R.; Yin, J.; Manatakis, D. V.; Apostolou, A.; Sunuwar, L.; Obrigewitch, J.; Hamilton, G. A.; Donowitz, M.; Karalis, K.

10.1101/723015 — cell biology — Posted on 2019-08-05

2858 Transcripts’ evolutionary history and structural dynamics give mechanistic insights into the functional diversity of the JNK family

Ait-hamlat, A.; Javier Zea, D.; Labeeuw, A.; Polit, L.; Richard, H.; Laine, E.

10.1101/119891 — bioinformatics — Posted on 2019-08-05

2859 A key region of molecular specificity orchestrates unique ephrin-B1 utilization by Cedar virus

Pryce, R.; Azarm, K.; Rissanen, I.; Harlos, K.; Bowden, T. A.; Lee, B.

10.1101/724138 — microbiology — Posted on 2019-08-05

2860 Computational modeling reveals frequency modulation of calcium-cAMP/PKA pathway in dendritic spines

Ohadi, D.; Schmitt, D. L.; Calabrese, B.; Halpain, S.; Zhang, J.; Rangamani, P.

10.1101/521740 — biophysics — Posted on 2019-08-05

2861 SigProfilerMatrixGenerator: a tool for visualizing and exploring patterns of small mutational events

Bergstrom, E. N.; Huang, M. N.; Mahto, U.; Barnes, M.; Stratton, M. R.; Rozen, S. G.; Alexandrov, L. B.

10.1101/653097 — bioinformatics — Posted on 2019-08-05

2862 Construction of two-input logic gates using Transcriptional Interference

Bordoy, A. E.; O'Connor, N. J.; Chatterjee, A.

10.1101/724278 — synthetic biology — Posted on 2019-08-05

2863 Inositol Trisphosphate Kinase and Diphosphoinositol Pentakisphosphate Kinase Enzymes Constitute the Inositol Pyrophosphate Synthesis Pathway in Plants

Adepoju, O.; Williams, S. P.; Craige, B.; Cridland, C. A.; Sharp, A. K.; Brown, A. M.; Land, E.; Perera, I. Y.; Mena, D.; Sobrado, P.; Gillaspy, G. E.

10.1101/724914 — plant biology — Posted on 2019-08-05

2864 APOBEC3B-dependent kataegis and TREX1-driven chromothripsis in telomere crisis

Maciejowski, J.; Chatzipli, A.; Dananberg, A.; de Lange, T.; Campbell, P.

10.1101/725366 — molecular biology — Posted on 2019-08-05

2865 Landscape scale terrestrial factors are also vital in shaping Odonata diversity of watercourses

Nagy, B. H.; Laszlo, Z.; Szabo, F.; Szocs, L.; Devai, G.; Tothmeresz, B.

10.1101/724476 — ecology — Posted on 2019-08-05

2866 PCH-2TRIP13 regulates spindle checkpoint strength

Defachelles, L.; Russo, A. E.; Nelson, C. R.; Bhalla, N.

10.1101/389080 — cell biology — Posted on 2019-08-05

2867 A rapid and automated sample-to-result Candida auris real-time PCR assay for high throughput testing of surveillance samples with BD MAX™ open system

Leach, L.; Russell, A.; Zhu, Y.; Chaturvedi, S.; Chaturvedi, V.

10.1101/608190 — microbiology — Posted on 2019-08-05

2868 Maximizing Ecosystem Services Provided To The New Oil Crop Brassica carinata Through Landscape And Arthropod Diversity

Stiles, S. C.; Fenster, C.; Lundgren, J.; Nottebrock, H.

10.1101/724203 — ecology — Posted on 2019-08-05

2869 Overtone focusing in biphonic Tuvan throat singing

Bergevin, C.; Narayan, C.; Williams, J.; Mhatre, N.; Steeves, J.; Story, B.

10.1101/725267 — biophysics — Posted on 2019-08-05

2870 spectrum_utils: A Python package for mass spectrometry data processing and visualization

Bittremieux, W.

10.1101/725036 — bioinformatics — Posted on 2019-08-05

2871 Online resources for data exploration, visualization, and discovery for the Pan-Cancer Analysis of Whole Genomes project (PCAWG)

Goldman, M.; Zhang, J.; Fonseca, N. A.; Cortes-Ciriano, I.; Xiang, Q.; Craft, B.; Pineiro-Yanez, E.; O'Connor, B.; Bazant, W.; Barrera, E.; Munoz, A.; Petryszak, R.; Füllgrabe, A.; Al-Shahrour, F.; Keays, M.; Haussler, D.; Weinstein, J.; Huber, W.; Valencia, A.; Park, P. J.; Papatheodorou, I.; Zhu, J.; Ferreti, V.; Vazquez, M.; PCAWG-12 Working Group, ; PCAWG Network,

10.1101/163907 — bioinformatics — Posted on 2019-08-05

2872 A biomimetic electrical stimulation strategy to induce asynchronous stochastic neural activity

Formento, E.; D'Anna, E.; Gribi, S.; Lacour, S. P.; Micera, S.

10.1101/725432 — bioengineering — Posted on 2019-08-05

2873 A unified neurocognitive model of the anterior temporal lobe contributions to semantics, language, social behaviour & face recognition

Ding, J.; Chen, K.; Liu, H.; Huang, L.; Chen, Y.; Lv, Y.; Yang, Q.; Guo, Q.; Han, Z.; Lambon Ralph, M.

10.1101/725515 — neuroscience — Posted on 2019-08-05

2874 Mammalian musculoskeletal regeneration is associated with reduced inflammatory cytokines and an influx of T cells.

Gawriluk, T. R.; Simkin, J.; Hacker, C. K.; Kimani, J. M.; Kiama, S. G.; Ezenwa, V. O.; Seifert, A. W.

10.1101/723783 — immunology — Posted on 2019-08-05

2875 Extraordinary diversity of HLA class I gene expression in single cells contribute to the plasticity and adaptability of human immune system

Tian, R.; Zhu, H.; Pang, Z.; Tian, Y.; Liang, C.

10.1101/725119 — immunology — Posted on 2019-08-05

2876 The alternative reality of plant mitochondrial DNA: one ring does not rule them all

Kozik, A.; Rowan, B.; Lavelle, D.; Berke, L.; Schranz, M. E.; Michelmore, R. W.; Christensen, A. C.

10.1101/564278 — genomics — Posted on 2019-08-05

2877 Evolution of imprinting via lineage-specific insertion of retroviral promoters

Bogutz, A. B.; Brind'Amour, J.; Kobayashi, H.; Jensen, K. N.; Nakabayashi, K.; Imai, H.; Lorincz, M. C.; Lefebvre, L.

10.1101/723254 — genetics — Posted on 2019-08-05

2878 Pairwise common variant meta-analyses of schizophrenia with other psychiatric disorders reveals shared and distinct gene and gene-set associations

Reay, W. R.; Cairns, M. J.

10.1101/725614 — genetics — Posted on 2019-08-05

2879 Take out the rubbish - Removing NUMTs and pseudogenes from the Bemisia tabaci cryptic species mtCOI database

Kunz, D.; Tay, W. T.; Elfekih, S.; Gordon, K.; De Barro, P. J.

10.1101/724765 — evolutionary biology — Posted on 2019-08-05

2880 The results of biodiversity-ecosystem functioning experiments are realistic

Jochum, M.; Fischer, M.; Isbell, F.; Roscher, C.; van der Plas, F.; Boch, S.; Boenisch, G.; Buchmann, N.; Catford, J. A.; Cavender-Bares, J.; Ebeling, A.; Eisenhauer, N.; Gleixner, G.; Hoelzel, N.; Kattge, J.; Klaus, V. H.; Kleinebecker, T.; Lange, M.; Le Provost, G.; Meyer, S. T.; Molina-Venegas, R.; Mommer, L.; Oelmann, Y.; Penone, C.; Prati, D.; Reich, P. B.; Rindisbacher, A.; Schaefer, D.; Scheu, S.; Schmid, B.; Tilman, D.; Tscharntke, T.; Vogel, A.; Wagg, C.; Weigelt, A.; Weisser, W. W.; Wilcke, W.; Manning, P.

10.1101/725812 — ecology — Posted on 2019-08-05

2881 Stochasticity-induced stabilization in ecology and evolution

Dean, A.; Shnerb, N.

10.1101/725341 — ecology — Posted on 2019-08-05

2882 Cell-of-Origin Analysis of Metastatic Gastric Cancer Uncovers the Origin of Inherent Intratumor Heterogeneity and a Fundamental Prognostic Signature

Wang, R.; Song, S.; Harada, K.; Han, G.; Pizzi, M. P.; Zhao, M.; Tatlonghari, G.; Zhang, S.; Wang, Y.; Zhao, S.; Badgwell, B.; Murphy, M. B.; Shanbhag, N.; Estrella, J.; Roy-Chowdhuri, S.; Adel Fouad Abdelhakeem, A.; Peng, G.; Calin, G. A.; Hanash, S. M.; Lazar, A. J.; Futreal, A. P.; Ajani, J. A.; Wang, L.

10.1101/725390 — cancer biology — Posted on 2019-08-05

2883 JMJD6 Cleaves MePCE to Release P-TEFb

Zhang, G.; Lee, S.; Liu, H.; Hill, R.; Hong, X.; Liu, X.; Crawford, F.; Zhang, Q.; Kingsley, M.; Chen, Z.; Lengeling, A.; Bernet, K.; Marrack, P.; Kappler, J.; Hansen, K.; Zhou, Q.; Li, C.-Y.

10.1101/725853 — biochemistry — Posted on 2019-08-05

2884 Are signals of aggressive intent less honest in urban habitats?

Akcay, C.; Beck, M. L.; Sewall, K. B.

10.1101/504258 — animal behavior and cognition — Posted on 2019-08-05

2885 The Medicago truncatula HKT family: Ion transport properties and regulation of expression upon abiotic stresses and symbiosis

Thouin, J.; Guo, M. Y.; Zribi, I.; Pauly, N.; Mouradi, M.; Cherki, G.; Sentenac, H.; Very, A.-A.

10.1101/720474 — plant biology — Posted on 2019-08-05

2886 A biophysical model of striatal microcircuits suggests theta-rhythmically interleaved gamma and beta oscillations mediate periodicity in motor control

Chartove, J. A. K.; McCarthy, M. M.; Pittman-Polletta, B. R.; Kopell, N. J.

10.1101/725416 — neuroscience — Posted on 2019-08-05

2887 Spatial Confidence Sets for Raw Effect Size Images

Bowring, A.; Telschow, F.; Schwartzman, A.; Nichols, T.

10.1101/631473 — neuroscience — Posted on 2019-08-05

2888 A widely distributed metalloenzyme class enables gut microbial metabolism of host- and diet-derived catechols

Maini Rekdal, V.; Nol Bernardino, P.; Luescher, M. U.; Kiamehr, S.; Turnbaugh, P. J.; Bess, E. N.; Balskus, E. P.

10.1101/725358 — microbiology — Posted on 2019-08-05

2889 Sequencing smart: De novo sequencing and assembly approaches for non-model mammals.

Etherington, G. J.; Heavens, D.; Baker, D.; Lister, A.; McNelly, R.; Garcia Accinelli, G.; Clavijo, B. J.; Macaulay, I.; Haerty, W.; Di Palma, F.

10.1101/723890 — genomics — Posted on 2019-08-05

2890 SORBS2 is a susceptibility gene to arrhythmogenic right ventricular cardiomyopathy

Ding, Y.; Yang, J.; Chen, P.; Lu, T.; Jiao, K.; Tester, D.; Jiang, K.; Aclerman, M.; Li, Y.; Wang, D. W.; Wang, D. W.; Lee, H.-C.; Xu, X.

10.1101/725077 — genetics — Posted on 2019-08-05

2891 Meta-transcriptomic comparison of the RNA viromes of the mosquito vectors Culex pipiens and Culex torrentium in northern Europe

Pettersson, J. H.- O.; Shi, M.; Eden, J.-S.; Holmes, E. C.; Hesson, J. C.

10.1101/725788 — evolutionary biology — Posted on 2019-08-05

2892 In vitro and in silico modeling of cellular and matrix-related changes during the early phase of osteoarthritis

Weber, M.-C.; Fischer, L.; Damerau, A.; Ponomarev, I.; Pfeiffenberger, M.; Gaber, T.; Goetschel, S.; Lang, J.; Roeblitz, S.; Buttgereit, F.; Ehrig, R.; Lang, A.

10.1101/725317 — bioengineering — Posted on 2019-08-05

2893 HOTAIR promotes an epithelial-to-mesenchymal transition through relocation of the histone demethylase Lsd1

Jarroux, J.; Bertrand, C.; Marc, G.; Foretek, D.; Saci, Z.; Londono Vallejo, J. A.; Pinskaya, M.; Morillon, A.

10.1101/724948 — cancer biology — Posted on 2019-08-05

2894 Tissue-guided LASSO for prediction of clinical drug response using preclinical samples

Huang, E.; Bhope, A.; Lim, J.; Sinha, S.; Emad, A.

10.1101/724310 — bioinformatics — Posted on 2019-08-05

2895 SIRT6 as a transcriptional coactivator of GATA4 prevents doxorubicin cardiotoxicity independently of its deacylase activity

Qian, M.; Peng, L.; Liu, Z.; Tang, X.; Wang, Z.; Liu, B.

10.1101/725044 — molecular biology — Posted on 2019-08-05

2896 High prevalence of Plasmodium malariae from hospital and communities in a high malaria transmission setting of Southern Nigeria

Oriero, E. C.; Olukosi, A. Y.; Oduwole, O.; Djimde, A.; D'Alessandro, U.; Meremikwu, M.; Amambua-Ngwa, A.

10.1101/725796 — microbiology — Posted on 2019-08-05

2897 Discovery of a polybrominated aromatic secondary metabolite from a planctomycete points at an ambivalent interaction with its macroalgae host

Panter, F.; Garcia, R.; Thewes, A.; Zaburannyi, N.; Bunk, B.; Overmann, J.; Gutierrez, M. V.; Krug, D.; Mueller, R.

10.1101/723874 — microbiology — Posted on 2019-08-05

2898 Long antiparallel open reading frames are unlikely to be encoding essential proteins in prokaryotic genomes

Moshensky, D.; Alexeevski, A.

10.1101/724807 — genomics — Posted on 2019-08-05

2899 De novo genome assembly of the meadow brown butterfly, Maniola jurtina

Singh, K. S.; Hosken, D.; Wedell, N.; ffrench-Constant, R.; Bass, C.; Baxter, S.; Paszkiewicz, K.; Sharma, M. D.

10.1101/715243 — genomics — Posted on 2019-08-05

2900 Adaptation is influenced by the complexity of environmental change during evolution in a dynamic environment

Boyer, S.; Sherlock, G.

10.1101/724419 — evolutionary biology — Posted on 2019-08-05

2901 Hybridization and diversification are positively correlated across vascular plant families

Mitchell, N.; Whitney, K. D.

10.1101/724377 — evolutionary biology — Posted on 2019-08-05

2902 Small molecules for modulating protein driven liquid-liquid phase separation in treating neurodegenerative disease

10.1101/721001 — cell biology — Posted on 2019-08-05

2903 Exponential Growth of Glioblastoma In Vivo Driven by Rapidly Dividing and Outwardly Migrating Cancer Stem Cells

Buchauer, L.; Khan, M. A.; Zhuo, Y.; Shao, C.; Zou, P.; Feng, W.; Qian, M.; Bekki, G.; Bunne, C.; Neuerburg, A.; Acikgöz, A. A.; Tomaschko, M.; Zhu, Z.; Alter, H.; Hartmann, K.; Friesen, O.; Hexel, K.; Höfer, T.; Liu, H.-K.

10.1101/723601 — cancer biology — Posted on 2019-08-05

2904 Data Denoising with transfer learning in single-cell transcriptomics

Wang, J.; Agarwal, D.; Huang, M.; Hu, G.; Zhou, Z.; Ye, C.; Zhang, N. R.

10.1101/457879 — bioinformatics — Posted on 2019-08-05

2905 Early transcriptional landscapes of Chlamydia trachomatis-infected epithelial cells at single cell resolution

Hayward, R. J.; Marsh, J. W.; Humphrys, M. S.; Huston, W. M.; Myers, G. S. A.

10.1101/724641 — systems biology — Posted on 2019-08-05

2906 Physiological and Biochemical Analyses of Sorghum Varieties Reveal Differential Responses to Salinity Stress

Mbinda, W.; Kimtai, M.

10.1101/720789 — plant biology — Posted on 2019-08-05

2907 Arabidopsis ERF109 regulates auxin transport-related genes in root development

Liu, R.; Cai, X.-T.; Zhao, P.-X.; Xu, P.; Xiang, C.

10.1101/725572 — plant biology — Posted on 2019-08-05

2908 Residual feed intake in dairy ewes: an evidence of intraflock variability

Gonzalez-Garcia, E.; Dos Santos, J. P.; Hassoun, P.

10.1101/723809 — physiology — Posted on 2019-08-05

2909 Short-, medium- and long-term metabolic responses of adult ewes submitted to nutritional and β-adrenergic challenges

GONZALEZ-GARCIA, E.; Alhamada, M.; Debus, N.; Menassol, J.-B.; Tesniere, A.; Vero, J.; Barboza, B.; Bocquier, F.

10.1101/723965 — physiology — Posted on 2019-08-05

2910 An 11-bit High Dynamic Range (HDR) Luminance Display and Its Use to Discover Contextual Mechanisms of Real-World Luminance Normalization for Visual Acuity and Target Discrimination

Hung, C. P.; Callahan-Flintoft, C.; Fedele, P.; Fluitt, K. F.; Odoemene, O.; Walker, A. J.; Harrison, A. V.; Vaughan, B. D.; Jaswa, M. M.; Wei, M.

10.1101/718437 — neuroscience — Posted on 2019-08-05

2911 Eye movements during visuomotor adaptation represent only part of the explicit learning

Bromberg, Z.; Donchin, O.; Haar, S.

10.1101/724864 — neuroscience — Posted on 2019-08-05

2912 Astrocytes modulate baroreceptor reflex sensitivity at the level of the nucleus of the solitary tract

Mastitskaya, S.; Turovsky, E. A.; Marina, N.; Theparambil, S. M.; Hadjihambi, A.; Ramage, A. G.; Gourine, A. V.; Hosford, P. S.

10.1101/725770 — neuroscience — Posted on 2019-08-05

2913 Precocious neuronal differentiation and disrupted oxygen responses in Kabuki syndrome

Carosso, G. A.; Boukas, L.; Augustin, J. J.; Nguyen, H. N.; Winer, B. L.; Cannon, G. H.; Robertson, J. D.; Zhang, L.; Hansen, K. D.; Goff, L. A.; Bjornsson, H. T.

10.1101/484410 — neuroscience — Posted on 2019-08-05

2914 An essential GDP-Fuc: β-D-Gal α-1,2-fucosyltransferase is located in the mitochondrion of Trypanosoma brucei

Bandini, G.; Damerow, S.; Sempaio Güther, M. L.; Mehlert, A.; Guo, H.; Beverley, S. M.; Ferguson, M. A. J.

10.1101/726117 — microbiology — Posted on 2019-08-05

2915 Global Genetic Cartography of Urban Metagenomes andAnti-Microbial Resistance

Danko, D. C.; Bezdan, D.; Afshinnekoo, E.; Ahsanuddin, S.; Alicea, J.; Bhattacharya, C.; Bhattacharyya, M.; Blekhman, R.; Butler, D. J.; Castro-Nallar, E.; Canas, A. M.; Chatziefthimiou, A. D.; Chng, K. R.; Coil, D. A.; Court, D. S.; Crawford, R. W.; Desnues, C.; Dias-Neto, E.; Donnellan, D.; Dybwad, M.; Eisen, J. A.; Elhaik, E.; Ercolini, D.; De Filippis, F.; Frolova, A.; Graf, A. B.; Green, D. C.; Lee, P. K. H.; Hecht, J.; Hernandez, M.; Jang, S.; Kahles, A.; Karasikov, M.; Knights, K.; Kyrpides, N. C.; Ljungdahl, P.; Lyons, A.; Mason-Buck, G.; McGrath, K.; Mongodin, E. F.; Mustafa, H.; Muta

10.1101/724526 — microbiology — Posted on 2019-08-05

2916 Microbial extracellular polysaccharide production and aggregate stability controlled by Switchgrass (Panicum virgatum) root biomass and soil water potential

Sher, Y.; Baker, N. R.; Herman, D. J.; Fossum, C.; Hale, L.; Zhang, X.-X.; Nuccio, E. E.; Saha, M. C.; Zhou, J.; Pett-Ridge, J.; Firestone, M. K.

10.1101/724195 — microbiology — Posted on 2019-08-05

2917 Metabolic responses in opposite sun-exposed Antarctic cryptoendolithic communities.

COLEINE, C.; Gevi, F.; Fanelli, G.; Onofri, S.; Timperio, A. M.; Selbmann, L.

10.1101/725663 — microbiology — Posted on 2019-08-05

2918 Non-antibiotic pharmaceuticals can enhance the spread of antibiotic resistance via conjugation

Wang, Y.; Lu, J.; Zhang, S.; Li, J.; Mao, L.; Yuan, Z.; Bond, P.; Guo, J.

10.1101/724500 — microbiology — Posted on 2019-08-05

2919 Comparative analysis of CreER transgenic mice for the study of brain macrophages - a case study

Jung, S.; Chappell-Maor, L.; Kolesnikov, M.; Grozovski, J.; Kim, J.-S.; Shemer, A.; Haimon, Z.; Boura-Halfon, S.; Prinz, M.; Masuda, T.

10.1101/725218 — immunology — Posted on 2019-08-05

2920 Differential expression of soluble receptor for advanced glycation end-products (sRAGE) in mice susceptible or resistant to chronic colitis

Bramhall, M.; Rich, K.; Chakraborty, A.; Logunova, L.; Han, N.; Wilson, J.; Booth, C.; McLaughlin, J.; Brass, A.; Cruickshank, S. M.

10.1101/719310 — immunology — Posted on 2019-08-05

2921 On the distribution of tract lengths during adaptive introgression

Shchur, V.; Svedberg, J.; Medina, P.; Corbett-Detig, R.; Nielsen, R.

10.1101/724815 — genomics — Posted on 2019-08-05

2922 Positively selected variants in functionally important regions of TLR7 in Alouatta guariba clamitans with yellow fever virus exposure in Northern Argentina

Torosin, N.; Webster, T.; Argibay, H.; Ferreyra, H.; Uhart, M.; Agostini, I.; Knapp, L. A.

10.1101/725333 — evolutionary biology — Posted on 2019-08-05

2923 Extinction and the temporal distribution of macroevolutionary bursts

De Lisle, S.; Punzalan, D.; Rollinson, N.; Rowe, L.

10.1101/725689 — evolutionary biology — Posted on 2019-08-05

2924 Genomic adaptations in information processing underpin trophic strategy in a whole-ecosystem nutrient enrichment experiment

Okie, J. G.; Poret-Peterson, A. T.; Lee, Z. M. P.; Richter, A.; Alcaraz, L. D.; Eguiarte, L. E.; Siefert, J. L.; Souza, V.; Dupont, C. L.; Elser, J. J.

10.1101/724484 — ecology — Posted on 2019-08-05

2925 Axiomatic Ecology: Rules for Building Consistent Ecosystem Models

Ansmann, G.; Bollenbach, T.

10.1101/724898 — ecology — Posted on 2019-08-05

2926 Complete structure of the core signalling unit of the E. coli chemosensory array in an optimised minicell strain

Burt, A.; Cassidy, C. K.; Ames, P.; Bacia-Verloop, M.; Baulard, M.; Huard, K.; Luthey-Schulten, Z.; Desfosses, A.; Stansfeld, P. J.; Margolin, W.; Parkinson, J. S.; Gutsche, I.

10.1101/723692 — cell biology — Posted on 2019-08-05

2927 Conformational sensors and domain-swapping reveal structural and functional differences between β-arrestin isoforms

Ghosh, E.; Dwivedi, H.; Baidya, M.; Srivastava, A.; Kumari, P.; Stepniewski, T.; Kim, H. R.; Lee, M.-H.; Gastel, J. v.; Chaturvedi, M.; Roy, D.; Pandey, S.; Maharana, J.; Guixa-Gonzalez, R.; Luttrell, L. M.; Chung, K. Y.; Dutta, S.; Selent, J.; Shukla, A. K.

10.1101/725622 — biophysics — Posted on 2019-08-05

2928 Instabilities and Spatiotemporal Dynamics of Active Elastic Filaments

Fily, Y.; Subramanian, P.; Schneider, T. M.; Chelakkot, R.; Gopinath, A.

10.1101/725283 — biophysics — Posted on 2019-08-05

2929 Repertoire of morphable proteins in an organism

Izumi, K.; Saho, E.; Kutomi, A.; Tomoike, F.; Okada, T.

10.1101/719260 — biophysics — Posted on 2019-08-05

2930 Computational mapping of the differentially expressed gene-lncRNA pairs present at the root nodule developmental stages of Arachis hypogaea

Rizvi, A. Z.; Dhusia, K.

10.1101/724674 — bioinformatics — Posted on 2019-08-05

2931 Supervised-learning is an accurate method for network-based gene classification

Liu, R.; Mancuso, C. A.; Yannakopoulos, A.; Johnson, K. A.; Krishnan, A.

10.1101/721423 — bioinformatics — Posted on 2019-08-05

2932 A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines

Vieth, B.; Parekh, S.; Ziegenhain, C.; Enard, W.; Hellmann, I.

10.1101/583013 — bioinformatics — Posted on 2019-08-05

2933 Spatial and temporal control of CRISPR/Cas9-mediated gene editing delivered via a light-triggered liposome system

Aksoy, Y. A.; Chen, W.; Goldys, E. M.; Deng, W.

10.1101/725465 — bioengineering — Posted on 2019-08-05

2934 Immunohistochemistry-based taxonomical classification of bladder cancer predicts response to neoadjuvant chemotherapy

Font, A.; Domenech, M.; Benitez, R.; Rava, M.; Marques, M.; Ramirez, J. L.; Pineda, S.; Dominguez, S.; Gago, J. L.; Badal, J.; Carrato, C.; Lopez, H.; Quer, A.; Castellano, D.; Malats, N.; Real, F. X.

10.1101/724351 — pathology — Posted on 2019-08-05

2935 Anxiety, avoidance, and sequential evaluation

Zorowitz, S.; Momennejad, I.; Daw, N. D.

10.1101/724492 — neuroscience — Posted on 2019-08-05

2936 Volume-wise analysis of fMRI time series allows accurate prediction of language lateralization

Wegrzyn, M.; Mertens, M.; Bien, C. G.; Woermann, F. G.; Labudda, K.

10.1101/725671 — neuroscience — Posted on 2019-08-05

2937 Anastrozole mediated modulation of mitochondrial activity by inhibition of mitochondrial permeability transition pore opening: An initial perspective

Kumar, S.; Ghosh, S.; Choudhary, N.; Faruq, M.; Inderganti, P. K.; Singh, V.; Saran, R. K.; Sait, H.; Kapoor, S.

10.1101/724872 — molecular biology — Posted on 2019-08-05

2938 Deep mutational scanning comprehensively maps how Zika envelope protein mutations affect viral growth and antibody escape

Sourisseau, M.; Lawrence, D. J. P.; Schwarz, M. C.; Storrs, C. H.; Veit, E. C.; Bloom, J. D.; Evans, M. J.

10.1101/725556 — microbiology — Posted on 2019-08-05

2939 Metagenomes in the borderline ecosystems of the Antarctic cryptoendolithic communities

Coleine, C.; Albanese, D.; Onofri, S.; Tringe, S.; Pennacchio, C.; Donati, C.; Stajich, J. E.; Selbmann, L.

10.1101/725200 — microbiology — Posted on 2019-08-05

2940 Microbial genomes retrieved from High Arctic lake sediments provision their microbes with genes to strive in cold and oligotrophic environments

Ruuskanen, M.; Colby, G.; St. Pierre, K.; St. Louis, V.; Aris-Brosou, S.; Poulain, A.

10.1101/724781 — microbiology — Posted on 2019-08-05

2941 Light-entrained and brain-tuned circadian circuits regulate ILC3 and gut homeostasis

Godinho-Silva, C.; Domingues, R. G.; Rendas, M.; Raposo, B.; Ribeiro, H.; Alves da Silva, J.; Vieira, A.; Costa, R. M.; Morais-Barbosa, N. L.; Carvalho, T.; Veiga-Fernandes, H.

10.1101/723932 — immunology — Posted on 2019-08-05

2942 Genomic prediction for commercial traits using univariate and multivariate approaches in Nile tilapia (Oreochromis niloticus)

Joshi, R.; Skaarud, A.; de Vera, M.; Alvarez, A. T.; Odegard, J.

10.1101/725143 — genomics — Posted on 2019-08-05

2943 Convolutional neural network model to predict causal risk factors that share complex regulatory features

Lee, T.; Sung, M. K.; Lee, S.; Yang, W.; Oh, J.; Hwang, S.; Ban, H.-J.; Choi, J. K.

10.1101/725309 — genetics — Posted on 2019-08-05

2944 Pedigree-based measurement of the de novo mutation rate in the gray mouse lemur reveals a high mutation rate, few mutations in CpG sites, and a weak sex bias

Campbell, C. R.; Tiley, G. P.; Poelstra, J. W.; Hunnicutt, K. E.; Larsen, P. A.; dos Reis, M.; Yoder, A. D.

10.1101/724880 — evolutionary biology — Posted on 2019-08-05

2945 Fine-scale seascape genomics of an exploited marine species, the common cockle Cerastoderma edule, using a multi-modelling approach

Coscia, I.; Wilmes, S.-B.; Ironside, J. E.; Goward Brown, A.; O'Dea, E.; Malham, S. K.; McDevitt, A.; Robins, P.

10.1101/724062 — evolutionary biology — Posted on 2019-08-05

2946 Spatiotemporal characterization of periocular mesenchyme heterogeneity during anterior segment development

Famulski, J. K.; Van Der Meulen, K.; Vocking, O.; Weaver, M.

10.1101/726257 — developmental biology — Posted on 2019-08-05

2947 Circular RNA hsa_circ_0068033 inhibits proliferation and invasion of breast cancer cells through sponging miR-659

Yuan, P.; Lei, L.; Liu, D.

10.1101/725523 — cancer biology — Posted on 2019-08-05

2948 HspA1B Is a Prognostic Biomarker and Correlated With Immune Infiltrates in different subtypes of Breast Cancers

He, J.; Wang, H.

10.1101/725861 — bioinformatics — Posted on 2019-08-05

2949 SNAPPy: a snakemake pipeline for scalable HIV-1 subtyping by phylogenetic pairing

Araujo, P. M. M.; Martins, J. S.; Osorio, N. S.

10.1101/725838 — bioinformatics — Posted on 2019-08-05

2950 Peppy: A Virtual Reality Environment For Exploring The Principles Of Polypeptide Structure

Doak, D.; Denyer, G.; Gerrard, J.; Mackay, J.; Allison, J.

10.1101/723155 — biochemistry — Posted on 2019-08-05

2951 Widespread arginine phosphorylation in human cells - a novel protein PTM revealed by mass spectrometry

Fu, S.; Fu, C.; Zhou, Q.; Lin, R.; Ouyang, H.; Wang, M.; Sun, Y.; Liu, Y.; Zhao, Y.

10.1101/725291 — biochemistry — Posted on 2019-08-05

2952 Sequestration and functional diversification of cyanogenic glucosides in the life cycle of Heliconius melpomene

Pinheiro de Castro, E. C.; Demirtas, R.; Orteu, A.; Olsen, C. E.; Motawie, M. S.; Zikan Cardoso, M.; Zagrobelny, M.; Bak, S.

10.1101/723973 — biochemistry — Posted on 2019-08-05

2953 Engineering the smallest transcription factor: accelerated evolution of a 63-amino acid peptide dual activator-repressor

Brodel, A. K.; Rodrigues, R.; Jaramillo, A.; Isalan, M.

10.1101/725739 — synthetic biology — Posted on 2019-08-05

2954 Topology-Dependent Interference of Synthetic Gene Circuits by Growth Feedback

Zhang, R.; Li, J.; Melendez-Alvarez, J.; Chen, X.; Sochor, P.; Zhang, Q.; Goetz, H.; Ding, T.; Wang, X.; Tian, X.-J.

10.1101/724906 — synthetic biology — Posted on 2019-08-05

2955 Incorporating Randomness into DNA Steganography to Realize Secondary Secret key, Self-destruction, and Quantum Key Distribution-like Function

Zhang, Y.; Cui, M.

10.1101/725499 — synthetic biology — Posted on 2019-08-05

2956 Genome-wide analysis of polymorphisms identified domestication-associated polymorphism desert carrying important rice grain size/weight QTL

Kumar, A.; Daware, A.; Kumar, A.; Kumar, V.; Krishnan S, G.; Mondal, S.; Patra, B. C.; Singh, A. K.; Tyagi, A. K.; Parida, S. K.; Thakur, J. K.

10.1101/725242 — plant biology — Posted on 2019-08-05

2957 Smaller limbic structures are associated with greater immunosuppression in over 1000 HIV-infected adults across five continents: Findings from the ENIGMA-HIV Working Group

Nir, T. M.; Fouche, J.-P.; Ananworanich, J.; Ances, B. M.; Boban, J.; Brew, B. J.; Chang, L.; Chaganti, J. R.; Ching, C. R.; Cysique, L. A.; Ernst, T.; Faskowitz, J.; Gupta, V.; Harezlak, J.; Heaps-Woodruff, J. M.; Hinkin, C. H.; Hoare, J.; Joska, J. A.; Kallianpur, K. J.; Kuhn, T.; Lam, H. Y.; Law, M.; Lebrun-Frenay, C.; Levine, A. J.; Mondot, L.; Nakamoto, B. K.; Navia, B. A.; Pennec, X.; Porges, E. C.; Shikuma, C. M.; Thames, A. D.; Valcour, V.; Vassallo, M.; Woods, A. J.; Thompson, P. M.; Cohen, R. A.; Paul, R.; Stein, D. J.; Jahanshad, N.

10.1101/724583 — neuroscience — Posted on 2019-08-05

2958 TVA-based modeling of short-term memory capacity, speed of processing and perceptual threshold in chronic stroke patients: Case-control differences, reliability, and sensitivity to cognitive training

Richard, G.; Petersen, A.; Ulrichsen, K. M.; Kolskaar, K. K.; Alnas, D.; Sanders, A.-M.; Dorum, E. S.; Ihle-Hansen, H.; Nordvik, J. E.; Westlye, L. T.

10.1101/725168 — neuroscience — Posted on 2019-08-05

2959 High Resolution Genome Wide Expression Analysis of Single Myofibers Using SMART-Seq

Blackburn, D. M.; Lazure, F.; Perkins, T. J.; Soleimani, V. D.

10.1101/724393 — molecular biology — Posted on 2019-08-05

2960 Differential expression of Ormdl genes in the islets of mice and humans with obesity

Fenske, R.; Lee, H.; Akcan, T.; Domask, E.; Davis, D. B.; Kimple, M.; Engin, F.

10.1101/715599 — molecular biology — Posted on 2019-08-05

2961 Lyophilized B. subtilis ZB183 Spores: 90-Day Repeat Dose Oral (Gavage) Toxicity Study In Wistar Rats

Barla, A. N.; Kannan, K.; Kumar, D. P. S.; Oliver, J. W. K.; Abbott, Z. D.

10.1101/724542 — microbiology — Posted on 2019-08-05

2962 Isolation of an antimicrobial resistant, biofilm forming, Klebsiella grimontii isolate from a re-usable water bottle.

Hubbard, A.; Reine, J.; Newire, E.; Wright, E.; Murphy, E.; Hutton, W.; Roberts, A.

10.1101/724971 — microbiology — Posted on 2019-08-05

2963 Evolving a new protein-DNA interface via sequential introduction of permissive and specificity-switching mutations

Jalal, A. S. B.; Tran, N. T.; Stevenson, C. E.; Tan, X.; Lawson, D. M.; Le, T. B. K.

10.1101/724823 — microbiology — Posted on 2019-08-05

2964 Increased Th1 bias in memory T cells corresponds with protection from reinfection in Plasmodium infection, and is regulated by T cell-intrinsic STAT3

Carpio, V. H.; Aussenac, F.; Wilson, K. D.; Villarino, A. V.; Dent, A. L.; Stephens, R.

10.1101/724963 — immunology — Posted on 2019-08-05

2965 Characterization of Genetic and Phenotypic Heterogeneity of Obstructive Sleep Apnea Using Electronic Health Records

Veatch, O. J.; Bauer, C. R.; Josyula, N. S.; Mazzotti, D. R.; Keenan, B. T.; Bagai, K.; Malow, B. A.; Robishaw, J. D.; Pack, A. I.; Pendergrass, S. A.

10.1101/724443 — genetics — Posted on 2019-08-05

2966 Kinetic Inference Resolves Epigenetic Mechanism of Drug Resistance in Melanoma

Su, Y.; Lu, X.; Li, G.; Liu, C.; Kong, Y.; Lee, J.; Ng, R.; Wong, S.; Robert, L.; Warden, C.; Liu, V.; Chen, J.; Wang, Z.; Yapeng, Y.; Cheng, H.; Ng, A.; Qin, G.; Peng, S.; Xue, M.; Johnson, D.; Xu, Y.; Wang, J.; Wu, X.; Shmulevich, I.; Shi, Q.; Levine, R.; Ribas, A.; Baltimore, D.; Guo, J.; Heath, J. R.; Wei, W.

10.1101/724740 — cancer biology — Posted on 2019-08-05

Li, X.; Snyder, M.

10.1101/724435 — systems biology — Posted on 2019-08-05

2968 Natural brown adipose expansion and remission of hyperglycemia in obese SM/J mice

Carson, C.; Miranda, M. A.; Macias-Velasco, J. F.; Gunawardana, S.; Hughes, J.; Oyama, S.; Kunzmann, M.; Schmidt, H.; Wayhart, J. P.; Lawson, H. A.

10.1101/724369 — physiology — Posted on 2019-08-05

2969 Hippocampal-amygdala interactions mediate uncertainty-dependent resistance to extinction following fear conditioning

Morris, J. S.; Windels, F.; Sah, P.

10.1101/725648 — neuroscience — Posted on 2019-08-05

2970 Fronto-striatal oscillations predict vocal output in bats

Weineck, K.; Garcia-Rosales, F.; Hechavarria, J. C.

10.1101/724112 — neuroscience — Posted on 2019-08-05

2971 Sensory information from a slipping object elicits a rapid and automatic shoulder response

Hernandez-Castillo, C. R.; Maeda, R. S.; Pruszynski, J. A.; Diedrichsen, J.

10.1101/724054 — neuroscience — Posted on 2019-08-05

2972 Bayesian transfer in a complex spatial localisation task

Kiryakova, R.; Aston, S.; Beierholm, U.; Nardini, M.

10.1101/716431 — neuroscience — Posted on 2019-08-05

2973 SirT7 auto-ADP-ribosylation regulates glucose starvation response through macroH2A1.1

Simonet, N. G.; Thackray, J. K.; Vazquez, B. N.; Ianni, A.; Espinosa-Alcantud, M.; Morales-Sanfrutos, J.; Hurtado-Bages, S.; Sabido, E.; Buschbeck, M.; Tischfield, J.; de la Torre, C.; Esteller, M.; Braun, T.; Olivella, M.; Serrano, L.; Vaquero, A.

10.1101/719559 — molecular biology — Posted on 2019-08-05

2974 Investigating the biochemical properties of Streptococcal polysaccharide capsules using atomic force microscopy

Marshall, H.; Aguayo, S.; Kilian, M.; Petersen, F.; Bozec, L.; Brown, J.

10.1101/723841 — microbiology — Posted on 2019-08-05

2975 Establishment of a Reverse Genetics System for Influenza D Virus

Ishida, H.; Murakami, S.; Kamiki, H.; Matsugo, H.; Takenaka-Uema, A.; Horimoto, T.

10.1101/724732 — microbiology — Posted on 2019-08-05

2976 Topological data analysis to uncover the shape of immune responses during co-infection

Sasaki, K.; Bruder, D.; Hernandez-Vargas, E. A.

10.1101/723957 — immunology — Posted on 2019-08-05

2977 Salivary gland macrophages assist tissue-resident CD8+ T cell immune surveillance

Stolp, B.; Thelen, F.; Ficht, X.; Altenburger, L.; Ruef, N.; Inavalli, K.; Germann, P.; Page, N.; Moalli, F.; Raimondi, A.; Keyser, K.; Safari, S.; Barone, F.; Dettmer, M.; Merkler, D.; Iannacone, M.; Sharpe, J.; Schlapbach, C.; Fackler, O.; Naegerl, V.; Stein, J.

10.1101/723791 — immunology — Posted on 2019-08-05

2978 In Situ Transcriptome Accessibility Sequencing (INSTA-seq)

Furth, D.; Hatini, V.; Lee, J. H.

10.1101/722819 — genomics — Posted on 2019-08-05

2979 genepanel.iobio - an easy to use web tool for generating disease- and phenotype-associated gene lists

Ekawade, A.; Velinder, M.; Ward, A.; DiSera, T.; Marth, G. T.

10.1101/722843 — genomics — Posted on 2019-08-05

2980 Death is on Our Side: Paleontological Data Drastically Modify Phylogenetic Hypotheses

Mongiardino Koch, N.; Parry, L. A.

10.1101/723882 — evolutionary biology — Posted on 2019-08-05

2981 PSS: An enabling QTY server for designing water-soluble α-helical transmembrane proteins

Tao, F.; Tang, H.; Zhang, S.; Xu, P.

10.1101/724658 — bioinformatics — Posted on 2019-08-05

2982 Attentional Networks during the Menstrual Cycle

Cohen, Z. Z.; Gotlieb, N.; Erez, O.; Wiznitzer, A.; Arbel, O.; Matas, D.; Koren, L.; Henik, A.

10.1101/717264 — animal behavior and cognition — Posted on 2019-08-05

2983 LTR_FINDER_parallel: parallelization of LTR_FINDER enabling rapid identification of long terminal repeat retrotransposons

Ou, S.; Jiang, N.

10.1101/722736 — genomics — Posted on 2019-08-05

2984 R-peak detector stress test with a new noisy ECG database reveals significant performance differences amongst popular detectors

Porr, B.; Howell, L.

10.1101/722397 — bioengineering — Posted on 2019-08-05

2985 Cornichon Homolog-3 (CNIH3) Modulates Spatial Memory in Female Mice

Frye, H. E.; Williams, S. B.; Trousdale, C. R.; Nelson, E. C.; Dougherty, J. D.; Moron, J. A.

10.1101/724104 — neuroscience — Posted on 2019-08-05

2986 Conformational Transition Pathways in Major Facilitator Superfamily Transporters

Ogden, D.; Immadisetty, K.; Moradi, M.

10.1101/708289 — biophysics — Posted on 2019-08-05

2987 Evolutionary increases in catecholamine signaling may underlie the emergence of adaptive traits and behaviors in the blind cavefish, Astyanax mexicanus

Gallman, K. E.; Rivera, D.; Soares, D.

10.1101/724179 — neuroscience — Posted on 2019-08-05

2988 Single Cell Gene Expression Analysis Reveals Human Stem Cell-Derived Graft Composition in a Cell Therapy Model of Parkinson’s Disease

Tiklova, K.; Nolbrant, S.; Fiorenzano, A.; Bjorklund, A. K.; Sharma, Y.; Heuer, A.; Gillberg, L.; Hoban, D. B.; Cardoso, T.; Adler, A. F.; Birtele, M.; Lunden-Miguel, H.; Volakakis, N.; Kirkeby, A.; Perlmann, T.; Parmar, M.

10.1101/720870 — neuroscience — Posted on 2019-08-05

2989 Intellectual Disability-related genes increase ADHD risk and locomotor activity in Drosophila

Klein, M.; Singgih, E.; van Rens, A.; Demontis, D.; Borglum, A.; Roth Mota, N.; Castells-Nobau, A.; Kiemeney, L.; Brunner, H.; Arias-Vasquez, A.; Schenck, A.; van der Voet, M.; Franke, B.

10.1101/725937 — genetics — Posted on 2019-08-05

2990 Reliability of an interneuron response depends on an integrated sensory state

Bargmann, C. I.; Dobosiewicz, M.

10.1101/726083 — neuroscience — Posted on 2019-08-05

2991 Neuronal-specific function of hTim8a in Complex IV assembly provides insight into the molecular mechanism underlying Mohr-Tranebjaerg syndrome

Kang, Y.; Anderson, A. J.; De Souza, D. P.; Palmer, C. S.; Fujihara, K. M.; Stait, T.; Frazier, A. E.; Clemons, N. J.; Tull, D.; Thorburn, D. R.; McConville, M. J.; Ryan, M. T.; Stroud, D. A.; Stojanovski, D.

10.1101/725655 — cell biology — Posted on 2019-08-05

2992 The olfactory co-receptor IR8a governs larval-frass mediated competition avoidance in a hawkmoth

Zhang, J.; Bisch-Knaden, S.; Fandino, R. A.; Yan, S.; Obiero, G. F.; Grosse-Wilde, E.; Hansson, B. S.; Knaden, M.

10.1101/725820 — neuroscience — Posted on 2019-08-05

2993 Morphogenesis is transcriptionally coupled to neurogenesis during olfactory placode development

Aguillon, R.; Madelaine, R.; Guturu, H.; Link, S.; Dufourcq, P.; Lecaudey, V.; Bejerano, G.; Blader, P.; Batut, J.

10.1101/725705 — developmental biology — Posted on 2019-08-05

2994 Haplotype-Resolved Cattle Genomes Provide Insights Into Structural Variation and Adaptation

Low, W. Y.; Tearle, R.; Liu, C.; Koren, S.; Rhie, A.; Bickhart, D. M.; Rosen, B. D.; Kroneberg, Z. N.; Kingan, S. B.; Tseng, E.; Thibaud-Nissen, F.; Martin, F. J.; Billis, K.; Ghurye, J.; Hastie, A. R.; Lee, J.; Pang, A.; Heaton, M. P.; Phillippy, A. M.; Hiendleder, S.; Smith, T. P.; Williams, J. L.

10.1101/720797 — genomics — Posted on 2019-08-05

2995 Lactation curve model with explicit representation of perturbations as a phenotyping tool for dairy livestock precision farming

Ben Abdelkrim, A.; Puillet, L.; Gomes, P.; Martin, O.

10.1101/661249 — zoology — Posted on 2019-08-05

2996 GUN1 influences the accumulation of NEP-dependent transcripts and chloroplast protein import in Arabidopsis cotyledons upon perturbation of chloroplast protein homeostasis

Tadini, L.; Peracchio, C.; Trotta, A.; Colombo, M.; Mancini, I.; Jeran, N.; Costa, A.; Faoro, F.; Marsoni, M.; Vannini, C.; Aro, E.-M.; Pesaresi, P.

10.1101/724518 — plant biology — Posted on 2019-08-05

2997 How Top-Down and Bottom-Up Regulation in Fronto-Amygdalar Network Changes over Time during Drug Cue-Exposure: An fMRI Study among Abstinent Heroin User

Zare-Sadeghi, A.; Oghabian, M. A.; Zare-Bidoky, M.; Batouli, S. A. H.; Ekhtiari, H.

10.1101/678961 — neuroscience — Posted on 2019-08-05

2998 Dysregulated RASGRP1 expression through RUNX1 mediated transcription promotes autoimmunity

Baars, M.; Douma, T.; Simeonov, D. R.; Myers, D. R.; Banerjee, S.; Kulhanek, K.; Zwakenberg, S.; Baltissen, M. P.; de Roock, S.; van Wijk, F.; Vermeulen, M.; Marson, A.; Roose, J. P.; Vercoulen, Y.

10.1101/656454 — immunology — Posted on 2019-08-05

2999 How to identify the best index case in families with hereditary breast and ovarian cancer

Wyrwoll, M.; Fuchs, L.; Waschk, D. E. J.

10.1101/527168 — genetics — Posted on 2019-08-05

3000 Sampling strategy optimization to increase statistical power in landscape genomics: a simulation-based approach

Selmoni, O.; Vajana, E.; Guillaume, A.; Rochat, E.; Joost, S.

10.1101/603829 — evolutionary biology — Posted on 2019-08-05

3001 An inordinate fondness for species with intermediate dispersal abilities

Ashby, B.; Shaw, A.; Kokko, H.

10.1101/644872 — evolutionary biology — Posted on 2019-08-05

3002 Diffusion Tensor Model links to Neurite Orientation Dispersion and Density Imaging at high b-value in Cerebral Cortical Gray Matter

Fukutomi, H.; Glasser, M. F.; Murata, K.; Akasaka, T.; Fujimoto, K.; Yamamoto, T.; Autio, J. A.; Okada, T.; Togashi, K.; Zhang, H.; Van Essen, D. C.; Hayashi, T.

10.1101/441659 — neuroscience — Posted on 2019-08-05

3003 INX-18 and INX-19 play distinct roles in electrical synapses that modulate aversive behavior in Caenorhabditis elegans

Voelker, L.; Upadhyaya, B.; Ferkey, D. M.; Woldemariam, S.; L'Etoile, N. D.; Rabinowitch, I.; Bai, J.

10.1101/725903 — neuroscience — Posted on 2019-08-05

3004 More Severe Loss-of-Function Sodium Channel induced by Compound SCN5A R965C and R1309H Mutants lead to Complex Familial Arrhythmia Syndrome.

Lin, Y.; Lin, X.; Jiang, B.; Shen, Y.; Qin, J.

10.1101/725945 — genetics — Posted on 2019-08-05

3005 Single-cell radioluminescence microscopy with two-fold higher sensitivity using dual scintillator configuration

Kim, T. J.; Wang, Q.; Shelor, M.; Pratx, G.

10.1101/725994 — bioengineering — Posted on 2019-08-05

3006 Symptoms expression of bakanae disease following seed treatment with phytohormone and metabolites

Quazi, S. a. J.; meon, S.; ahmad, Z.; Jaafar, H.

10.1101/725978 — plant biology — Posted on 2019-08-05

3007 A dual foveal-peripheral visual processing model implements efficient saccade selection

Dauce, E.; Albiges, P.; Perrinet, L. U.

10.1101/725879 — neuroscience — Posted on 2019-08-05

3008 In vitro Evaluation of Various Antimicrobials against Field Mycoplasma gallisepticum and Mycoplasma synoviae Isolates in Egypt

Abd El-Hamid, M. I.; Awad, N. F.; Abo-Shama, U.; H, Y. M.; Abdel-Rahman, M. A.; Hetta, H. F.; Abdelaziz, A. M.

10.1101/726000 — microbiology — Posted on 2019-08-05

3009 Frequency of five Escherichia Coli pathotypes in Iranian adults and children with acute diarrhea

Eybpoosh, S.; Mostaan, S.; Gouya, M. M.; Masoumi-Asl, H.; Owlia, P.; Eshrati, B.; Montazer Razavi Khorasan, M. R.; Bouzari, S.

10.1101/725952 — microbiology — Posted on 2019-08-05

3010 Unraveling the heterogeneous mutational signature of spontaneously developing tumors in MLH1-/- mice

Gladbach, Y.; Wiegele, L.; Hamed, M.; Merkenschläger, A. M.; Fuellen, G.; Junghanss, C.; Maletzki, C.

10.1101/725929 — cancer biology — Posted on 2019-08-05

3011 Comparative Analysis of Acoustic Propagation Parameters of Natural Sounds of Anopheles gambiae s.s and Odorrana tormota Significant in Mosquito Startle

MANG'ARE, P. A.; Gichuki, F. N.; ROTICH, S.; MAKATIANI, J.; WAKHU, B. R.

10.1101/725960 — animal behavior and cognition — Posted on 2019-08-05

3012 Regulation of Microtubule Disassembly by Spatially Heterogeneous Patterns of Acetylation

J S, A.; Padinhateeri, R.; Das, D.

10.1101/725895 — biophysics — Posted on 2019-08-05

3013 Systematic exploration of protein conformational space using a Distance Geometry approach

Malliavin, T. E.; Mucherino, A.; Lavor, C.; Liberti, L.

10.1101/650903 — bioinformatics — Posted on 2019-08-05

3014 CODC: A copula based model to identify differential coexpression.

Ray, S.; Lall, S.; Bandyopadhyay, S.

10.1101/725887 — bioinformatics — Posted on 2019-08-05

3015 Malaria vaccine candidates displayed on novel virus-like particles are immunogenic and induce transmission-blocking activity

Chan, J.-A.; Wetzel, D.; Reiling, L.; Miura, K.; Drew, D. R.; Gilson, P. R.; Anderson, D. A.; Richards, J. S.; Long, C. A.; Suckow, M.; Jenzelewski, V.; Tsuboi, T.; Boyle, M. J.; Piontek, M.; Beeson, J. G.

10.1101/597831 — immunology — Posted on 2019-08-05

3016 Comparative genomics: Dominant coral bacterium Endozoicomonas acroporae metabolizes Dimethylsulfoniopropionate (DMSP)

Tandon, K.; Chiang, P.-W.; Lu, C.-Y.; Wada, N.; Yang, S.-H.; Chan, Y.-F.; Chen, P.-Y.; Chang, H.-Y.; Chou, M.-S.; Chen, W.-M.; Tang, S.-L.

10.1101/519546 — ecology — Posted on 2019-08-05

3017 EpiGraph: an open-source platform to quantify epithelial organization

Vicente-Munuera, P.; Gomez-Galvez, P. J.; Tetley, R. J.; Forja, C.; Tagua, A.; Letran, M.; Tozluoglu, M.; Mao, Y.; Escudero, L. M.

10.1101/217521 — developmental biology — Posted on 2019-08-05

3018 Fecal microbiota transplantation brings about bacterial strain displacement in patients with inflammatory bowel diseases

Zou, M.; Jie, Z.; Cui, B.; Wang, H.; Feng, Q.; Zou, Y.; Zhang, X.; Yang, H.; Wang, J.; Zhang, F.; Jia, H.

10.1101/439687 — clinical trials — Posted on 2019-08-05

3019 Base-pair Ambiguity and the Kinetics of RNA Folding

Zhou, G.; Loper, J.; Geman, S.

10.1101/329698 — bioinformatics — Posted on 2019-08-05

3020 DNA Punch Cards: Encoding Data on Native DNA Sequences via Nicking

Tabatabaei, S. K.; Wang, B.; Athreya, N. B. M.; Enghiad, B.; Hernandez, A. G.; Leburton, J.-P.; Soloveichik, D.; Zhao, H.; Milenkovic, O.

10.1101/672394 — synthetic biology — Posted on 2019-08-04

3021 Automated Reconstruction of a Serial-Section EM Drosophila Brain with Flood-Filling Networks and Local Realignment

Li, P. H.; Lindsey, L. F.; Januszewski, M.; Zheng, Z.; Bates, A. S.; Taisz, I.; Tyka, M.; Nichols, M.; Li, F.; Perlman, E.; Maitin-Shepard, J.; Blakely, T.; Leavitt, L.; Jefferis, G. S. X. E.; Bock, D.; Jain, V.

10.1101/605634 — neuroscience — Posted on 2019-08-04

3022 Reliable longitudinal brain age prediction in stroke patients: Associations with cognitive function and response to cognitive training

Richard, G.; Kolskaar, K. K.; Ulrichsen, K. M.; Kaufmann, T.; Alnaes, D.; Sanders, A.-M.; Dorum, E. S.; Monereo Sanchez, J.; Petersen, A.; Ihle-Hansen, H.; Nordvik, J. E.; Westlye, L. T.

10.1101/687079 — neuroscience — Posted on 2019-08-04

3023 Hypoxia in cancer chemo- and immunotherapy: foe or friend?

Vitos, N.; Chen, S.; Mathur, S.; Chamseddine, I.; Rejniak, K. A.

10.1101/629907 — systems biology — Posted on 2019-08-04

3024 Display of malaria transmission-blocking antigens on chimeric duck hepatitis B virus-derived virus-like particles produced in Hansenula polymorpha

Wetzel, D.; Chan, J.-A.; Suckow, M.; Barbian, A.; Weniger, M.; Jenzelewski, V.; Reiling, L.; Richards, J. S.; Anderson, D. A.; Kouskousis, B.; Palmer, C.; Hanssen, E.; Schembecker, G.; Merz, J.; Beeson, J. G.; Piontek, M.

10.1101/595538 — synthetic biology — Posted on 2019-08-04

3025 Allometric Scaling of physiologically-relevant organoids

Magliaro, C.; Rinaldo, A.; Ahluwalia, A.

10.1101/559682 — bioengineering — Posted on 2019-08-04

3026 Adaptive rewiring based on diffusion balances stability and plasticity in weighted networks while evolving ‘brain-like’ structure

Rentzeperis, I.; Leeuwen, C. v.

10.1101/723353 — neuroscience — Posted on 2019-08-04

3027 The effect of chemical distances, physical distances, and the presence of sexuals on aggression in Cataglyphis desert ants

Inbar, S.; Privman, E.

10.1101/478552 — evolutionary biology — Posted on 2019-08-04

3028 B-SIDER: Computational Algorithm for the Design of Complementary β-sheet Sequences

Yu, T.-G.; Kim, H.-S.; Choi, Y.

10.1101/631069 — bioinformatics — Posted on 2019-08-04

3029 Artifact-free, high-temporal-resolution in vivo opto-electrophysiology with microLED optoelectrodes

Kim, K.; Vöröslakos, M.; Seymour, J. P.; Wise, K. D.; Buzsaki, G.; Yoon, E.

10.1101/622670 — bioengineering — Posted on 2019-08-04

3030 Can school children support ecological research? Lessons from the ‘Oak bodyguard’ citizen science project

Castagneyrol, B.; Valdes-Correcher, E.; Bourdin, A.; Barbaro, L.; Bouriaud, O.; Branco, M.; Csoka, G.; Duduman, M.-L.; Dulaurent, A.-M.; Eotvos, C. B.; Ferrante, M.; Furjes-Mikio, A.; Galman, A.; Gossner, M. M.; Harvey, D.; Howe, A. G.; Kaennel-Dobbertin, M.; Koricheva, J.; Lovei, G. L.; Lupastean, D.; Milanovic, S.; Mrazova, A.; Opgennoorth, L.; Pitkanen, J.-M.; Popovic, M.; Roslin, T. V.; Scherer-Lorenzen, M.; Sam, K.; Tahadlova, M.; Thomas, R.; Tack, A. J. M.

10.1101/712638 — scientific communication and education — Posted on 2019-08-04

3031 Author-Reviewer Homophily in Peer Review

Murray, D.; Siler, K.; Lariviere, V.; Chan, W. M.; Collings, A. M.; Raymond, J.; Sugimoto, C. R.

10.1101/400515 — scientific communication and education — Posted on 2019-08-04

3032 Spatial density estimates of Eurasian lynx (Lynx lynx) in the French Jura and Vosges Mountains

Gimenez, O.; Gatti, S.; Duchamp, C.; Germain, E.; Laurent, A.; Zimmermann, F.; Marboutin, E.

10.1101/600015 — ecology — Posted on 2019-08-04

3033 DeepC: Predicting chromatin interactions using megabase scaled deep neural networks and transfer learning.

Schwessinger, R.; Gosden, M.; Downes, D.; Brown, R.; Telenius, J.; Whye Teh, Y.; Lunter, G.; Hughes, J. R.

10.1101/724005 — genomics — Posted on 2019-08-04

3034 Sex differences in seizure at presentation in glioma population

Ranjbar, S.; Anderies, B. J.; Singleton, K. W.; Johnston, S. K.; Rickertsen, C. R.; Sharma, A.; Porter, A. B.; Mrugala, M. M.; Hu, L. S.; Mitchell, J. R.; Rubin, J. B.; Swanson, K. R.

10.1101/718791 — cancer biology — Posted on 2019-08-04

3035 A Galaxy-based training resource for single-cell RNA-seq quality control and analyses.

Etherington, G. J.; Soranzo, N.; Mohammed, S.; Haerty, W.; Davey, R.; Di-Palma, F.

10.1101/724047 — bioinformatics — Posted on 2019-08-04

3036 Evaluation of phenotyping errors on polygenic risk score predictions

Li, R.; Tong, J.; Duan, R.; Chen, Y.; Moore, J. H.

10.1101/724534 — genomics — Posted on 2019-08-04

3037 Dynamic 3D chromosomal landscapes in acute leukemia

Kloetgen, A.; Thandapani, P.; Ntziachristos, P.; Ghebrechristos, Y.; Nomikou, S.; Lazaris, C.; Chen, X.; Hu, H.; Bakogianni, S.; Wang, J.; Fu, Y.; Boccalatte, F.; Zhong, H.; Paietta, E.; Trimarchi, T.; Zhu, Y.; van Vlierberghe, P.; Inghirami, G. G.; Lionnet, T.; Aifantis, I.; Tsirigos, A.

10.1101/724427 — cancer biology — Posted on 2019-08-04

3038 Apolipoprotein A-I Mimetic 4F Peptide Generates Amyloid Cytotoxins by Forming Hetero-oligomers with β-amyloid

Sahoo, B.; Bekier, M.; Liu, Z.; Kocman, V.; Stoddard, A.; Anantharamaiah, G.; Nowick, J.; Fierke, C.; Wang, Y.; Ramamoorthy, A.

10.1101/722983 — biophysics — Posted on 2019-08-04

3039 CHD4 regulates PADI1 and PADI3 expression linking pyruvate kinase M2 citrullination to glycolysis and proliferation.

Davidson, I.; Coassolo, S.; Davidson, G.; Negroni, L.; Gambi, G.; Daujat, S.; Romier, C.

10.1101/718486 — cancer biology — Posted on 2019-08-04

3040 Multimerization of Zika Virus-NS5 causes a ciliopathy and forces premature neurogenesis

Saade, M.; Ferrero, D. S.; Blanco-Ameijeiras, J. M.; Gonzalez- Gobartt, E.; Ruiz-Arroyo, V. M.; Martinez-Saez, E.; Ramon y Cajal, S.; Verdaguer, N.; Marti, E.

10.1101/719625 — developmental biology — Posted on 2019-08-04

3041 Machine learning based detection of genetic and drug class variant impact on functionally conserved protein binding dynamics

Babbitt, G. A.; Fokoue, E. P.; Evans, J. R.; Diller, K. I.; Adams, L. E.

10.1101/724211 — biophysics — Posted on 2019-08-04

3042 WT and A53T α-synuclein systems: Melting Diagram and its new interpretation

Bokor, M.; Tantos, A.; Tompa, P.; Han, K.-H.; Tompa, K.

10.1101/724922 — biophysics — Posted on 2019-08-04

3043 Myogenesis modelled by human pluripotent stem cells uncovers Duchenne muscular dystrophy phenotypes prior to skeletal muscle commitment

Mournetas, V.; Massourides, E.; Dupont, J.-B.; Kornobis, E.; Polveche, H.; Jarrige, M.; Gosselin, M.; Garbis, S. D.; Gorecki, D. C.; Pinset, C.

10.1101/720920 — developmental biology — Posted on 2019-08-04

3044 Correction of Niemann-Pick type C1 disease with the histone deacetylase inhibitor valproic acid

Subramanian, K.; Hutt, D. M.; Gupta, V.; Mao, S.; Balch, W. E.

10.1101/724187 — cell biology — Posted on 2019-08-04

3045 Characterization of TAG-63 and its role on axonal transport in C. elegans

Bhan, P.; Muthaiyan Shanmugam, M.; Wang, D.; Bayansan, O.; Chen, C.-W.; Wagner, O.

10.1101/723338 — cell biology — Posted on 2019-08-04

3046 Deciphering the Amyloid Foldome of TDP-43

Mompean, M.; Buratti, E.; Laurents, D.

10.1101/723817 — biophysics — Posted on 2019-08-04

3047 Origin of Conformational Dynamics in a Globular Protein

Damry, A. M.; Mayer, M. M.; Broom, A.; Goto, N. K.; Chica, R. A.

10.1101/724286 — biophysics — Posted on 2019-08-04

3048 Exploring endocytic compartment morphology with systematic genetics and single cell image analysis

Mattiazzi Usaj, M.; Sahin, N.; Friesen, H.; Pons, C.; Usaj, M.; Paz Masinas, M.; Shuteriqi, E.; Shkurin, A.; Aloy, P.; Morris, Q.; Boone, C.; Andrews, B. J.

10.1101/724989 — cell biology — Posted on 2019-08-04

3049 Opposing immune and genetic forces shape oncogenic programs in synovial sarcoma

Jerby, L.; Neftel, C.; Shore, M. E.; McBride, M. J.; Haas, B.; Izar, B.; Weissman, H. R.; Volorio, A.; Boulay, G.; Cironi, L.; Richman, A. R.; Broye, L. C.; Gurski, J. M.; Luo, C. C.; Mylvaganam, R.; Nguyen, L.; Mei, S.; Melms, J. c.; Georgescu, C.; Cohen, O.; Buendia-Buendia, J. E.; Cuoco, M. S.; Labes, D.; Zollinger, D. R.; Beechem, J. M.; Nielsen, P.; Chebib, I.; Cote, G.; Choy, E.; Letovanec, I.; Cherix, S.; Wagle, N.; Sorger, P. K.; Haynes, A. B.; Mullen, J. T.; Stamenkovic, I.; Rivera, M. N.; Kadoch, C.; Rozenblatt-Rosen, O.; Suva, M. L.; Riggi, N.; Regev, A.

10.1101/724302 — cancer biology — Posted on 2019-08-04

3050 Structure determination from lipidic cubic phase embedded microcrystals by MicroED

Zhu, L.; Bu, G.; Jing, L.; Shi, D.; Gonen, T.; Liu, W.; Nannenga, B. L.

10.1101/724575 — biochemistry — Posted on 2019-08-04

3051 Dynamics of activating and repressive histone modifications in Drosophila neural stem cell lineages and brain tumors

Abdusselamoglu, M. D.; Landskron, L.; Bowman, S. K.; Eroglu, E.; Burkard, T. R.; Kingston, R. E.; Knoblich, J.

10.1101/724039 — developmental biology — Posted on 2019-08-03

3052 Arabidopsis ECERIFERUM3 (CER3) Plays a Critical Role in Maintaining Hydration for Pollen-Stigma Recognition during Fertilization

Zhang, S.; Xu, F.; Li, X.; Yang, Z.

10.1101/724559 — developmental biology — Posted on 2019-08-04

3053 Organoid-derived Duodenum Intestine-Chip for preclinical drug assessment in a human relevant system

Kasendra, M.; Luc, R.; Yin, J.; Manatakis, D. V.; Apostolou, A.; Sunuwar, L.; Obrigewitch, J.; Hamilton, G. A.; Donowitz, M.; Karalis, K.

10.1101/723015 — cell biology — Posted on 2019-08-04

3054 Interleukin-12 elicits a non-canonical response in B16 melanoma cells to enhance survival

Byrne-Hoffman, C.; Deng, W.; McGrath, O.; Wang, P.; Rojanasakul, Y.; Klinke, D. J.

10.1101/608828 — cancer biology — Posted on 2019-08-03

3055 Motor effort and adaptive sampling in perceptual decision-making

Zhu, T.

10.1101/637017 — animal behavior and cognition — Posted on 2019-08-03

3056 MR-LDP: a two-sample Mendelian randomization for GWAS summary statistics accounting for linkage disequilibrium and horizontal pleiotropy

Cheng, Q.; Yang, Y.; Shi, X.; Yeung, K.-F.; Yang, C.; Peng, H.; Liu, J.

10.1101/684746 — genetics — Posted on 2019-08-03

3057 Depletion of intermediate filament IFB-1 negatively affects mobility and physiological function of mitochondria in C. elegans sensory neurons

Chang, Y.; Muthaiyan Shanmugam, M.; Bhan, P.; Barmaver, S. N.; Wu, G.-H.; Wagner, O. I.

10.1101/723205 — cell biology — Posted on 2019-08-03

3058 Stem cell models identify lineage-specific catabolic signaling, neoplastic mechanisms and therapeutic vulnerabilities in tuberous sclerosis

Delaney, S. P.; Julian, L. M.; Pietrobon, A.; Yockell-Lelievre, J.; Dore, C.; Wang, T. T.; Doyon, V. C.; Raymond, A.; Patten, D. A.; Harper, M.-E.; Sun, H.; Stanford, W. L.

10.1101/683359 — cancer biology — Posted on 2019-08-03

3059 Pan-Cancer Exploration of mRNA Mediated Dysregulated Pathways in the Cancer Genomics Cloud

Linan, M.; Wang, J.; Dinu, V.

10.1101/599225 — bioinformatics — Posted on 2019-08-03

3060 Surpassing thermodynamic, kinetic, and stability barriers to isomerization catalysis for tagatose biosynthesis

Bober, J. R.; Nair, N. U.

10.1101/547166 — bioengineering — Posted on 2019-08-03

3061 Helical Fibrillar Microstructure of Tendon using Serial Block-Face SEM and a Mechanical Model for Interfibrillar Load Transfer

Safa, B. N.; Peloquin, J. M.; Natriello, J. R.; Caplan, J. L.; Elliott, D. M.

10.1101/547281 — bioengineering — Posted on 2019-08-03

3062 Generation of human neural retina transcriptome atlas by single cell RNA sequencing

Lukowski, S.; Lo, C.; Sharov, A.; Nguyen, Q.; Fang, L.; Hung, S.; Zhu, L.; Zhang, T.; Nguyen, T.; Senabouth, A.; Jabbari, J.; Welby, E.; Sowden, J.; Waugh, H.; Mackey, A.; Pollock, G.; Lamb, T.; Wang, P.-Y.; Hewitt, A.; Gillies, M.; Powell, J.; Wong, R.

10.1101/425223 — systems biology — Posted on 2019-08-03

3063 Simulation of multiple microenvironments shows a putative role of RPTPs on the control of Epithelial-to-Mesenchymal Transition.

Pais, R. J.

10.1101/609263 — systems biology — Posted on 2019-08-03

3064 A theoretical model for focal seizure initiation, propagation, termination, and progression

Liou, J.-y.; Smith, E. H.; Bateman, L. M.; Bruce, S. L.; McKhann, G. M.; Goodman, R. R.; Emerson, R. G.; Schevon, C. A.; Abbott, L. F.

10.1101/724088 — neuroscience — Posted on 2019-08-03

3065 Single-molecule live-cell imaging reveals parallel pathways of prokaryotic nucleotide excision repair

Ghodke, H.; Ho, H. N.; van Oijen, A. M.

10.1101/515502 — biophysics — Posted on 2019-08-03

3066 Increased soluble amyloid-beta causes early aberrant brain network hypersynchronisation in a mature-onset mouse model of amyloidosis

Ben-Nejma, I. R.; Keliris, A. J.; Daans, J.; Ponsaerts, P.; Verhoye, M.; Van der Linden, A.; Keliris, G. A.

10.1101/723981 — neuroscience — Posted on 2019-08-03

3067 Locomotor suppression by a monosynaptic amygdala to brainstem circuit

Roseberry, T. K.; Lalive, A.; Margolin, B.; Kreitzer, A.

10.1101/724252 — neuroscience — Posted on 2019-08-03

3068 Whole integration of neural connectomics, dynamics and bio-mechanics for identification of behavioral sensorimotor pathways in Caenorhabditis elegans

Kim, J.; Santos, J. A.; Alkema, M. J.; Shlizerman, E.

10.1101/724328 — neuroscience — Posted on 2019-08-03

3069 Relating visual production and recognition of objects in human visual cortex

Fan, J.; Wammes, J.; Gunn, J.; Yamins, D.; Norman, K.; Turk-Browne, N.

10.1101/724294 — neuroscience — Posted on 2019-08-03

3070 Representation of uncertainty in macaque visual cortex

Henaff, O. J.; Boundy-Singer, Z. M.; Meding, K.; Ziemba, C. M.; Goris, R. L.

10.1101/724021 — neuroscience — Posted on 2019-08-03

3071 Chance and Necessity in the Pleiotropic Consequences of Adaptation for Budding Yeast

Jerison, E. R.; Nguyen Ba, A. N.; Desai, M. M.; Kryazhimskiy, S.

10.1101/724617 — evolutionary biology — Posted on 2019-08-03

3072 Structural diversity of oligomeric β-propellers with different numbers of identical blades

Afanasieva, E.; Chaudhuri, I.; Martin, J.; Hertle, E.; Ursinus, A.; Alva, V.; Hartmann, M. D.; Lupas, A. N.

10.1101/723619 — biochemistry — Posted on 2019-08-02

3073 An integrated brain-machine interface platform with thousands of channels

Musk, E.; Neuralink,

10.1101/703801 — neuroscience — Posted on 2019-08-02

3074 Extraction of active RhoGTPases by RhoGDI regulates spatiotemporal patterning of RhoGTPases

Golding, A.; Visco, I.; Bieling, P.; Bement, W.

10.1101/720094 — cell biology — Posted on 2019-08-02

3075 Pitfalls and Remedies for Cross Validation with Multi-trait Genomic Prediction Methods

Runcie, D.; Cheng, H.

10.1101/595397 — genetics — Posted on 2019-08-02

3076 Digital Natives and Dual Task: Handling It But Not Immune Against Cognitive-Locomotor Interferences

Dierick, F.; Buisseret, F.; Renson, M.; Luta, A. M.

10.1101/723775 — physiology — Posted on 2019-08-02

3077 Usp14 is required for spermatogenesis and ubiquitin stress responses in Drosophila melanogaster

Kovacs, L.; Nagy, A.; Margit, P.; Deak, P.

10.1101/724153 — genetics — Posted on 2019-08-02

3078 Direct evidence of an increasing mutational load in humans

Aris-Brosou, S.

10.1101/307058 — evolutionary biology — Posted on 2019-08-02

3079 Evolved, Selective Erasers of Distinct Lysine Acylations

Spinck, M.; Ecke, M.; Gasper, R.; Neumann, H.

10.1101/723684 — biochemistry — Posted on 2019-08-02

3080 Microfluidic-Induced Sleep: A Spontaneous C. elegans Sleep State Regulated by Satiety, Thermosensation and Mechanosensation

Gonzales, D. L.; Zhou, J.; Fan, B.; Robinson, J. T.

10.1101/547075 — neuroscience — Posted on 2019-08-02

3081 Structural Basis for CAL1-Mediated Centromere Maintenance

Medina-Pritchard, B.; Lazou, V.; Zou, J.; Byron, O.; Rappsilber, J.; Heun, P.; Jeyaprakash, A. A.

10.1101/723213 — biochemistry — Posted on 2019-08-02

3082 NF-κB signaling regulates the formation of proliferating Muller glia-derived progenitor cells in the avian retina.

Palazzo, I.; Deistler, K.; Hoang, T. V.; Blackshaw, S.; Fischer, A. J.

10.1101/724260 — neuroscience — Posted on 2019-08-02

3083 mPFC Spindle Cycles Organize Sparse Thalamic Activation and Recently Active CA1 cells During non-REM Sleep

Varela, C.; Wilson, M. A.

10.1101/653436 — neuroscience — Posted on 2019-08-02

3084 LARP1 facilitates translational recovery after amino acid refeeding by preserving long poly(A)-tailed TOP mRNAs

Ogami, K.; Oishi, Y.; Nogimori, T.; Sakamoto, K.; Hoshino, S.-i.

10.1101/716217 — molecular biology — Posted on 2019-08-02

3085 Experimental Determination of Evolutionary Barriers to Horizontal Gene Transfer

Acar Kirit, H.; Lagator, M.; Bollback, J. P.

10.1101/722959 — microbiology — Posted on 2019-08-02

3086 A time resolved interaction analysis of Bem1 reconstructs the flow of Cdc42 during polar growth

Grinhagens, S.; Dunkler, A.; Wu, Y.; Rieger, L.; Brenner, P.; Gronemeyer, T.; Johnsson, N.

10.1101/723171 — cell biology — Posted on 2019-08-02

3087 GARDEN-NET and ChAseR: a suite of tools for the analysis of chromatin networks

Madrid-Mencia, M.; Raineri, E.; Pancaldi, V.

10.1101/717298 — bioinformatics — Posted on 2019-08-02

3088 Multi-Neuromodulator Measurements across Fronto-Striatal Network Areas of the Behaving Macaque using Solid-Phase Microextraction

Hassani, S.-A.; Lendor, S.; Boyaci, E.; Pawliszyn, J.; Womelsdorf, T.

10.1101/534651 — neuroscience — Posted on 2019-08-02

3089 Global priorities for conservation of reptilian phylogenetic diversity in the face of human impacts

Gumbs, R.; Gray, C. L.; Bohm, M.; Hoffmann, M.; Grenyer, R.; Jetz, W.; Meiri, S.; Roll, U.; Owen, N. R.; Rosindell, J.

10.1101/723742 — ecology — Posted on 2019-08-02

3090 Anterior cingulate cortex differently modulates fronto-parietal functional connectivity between resting-state and working memory tasks

Di, X.; Zhang, H.; Biswal, B. B.

10.1101/722710 — neuroscience — Posted on 2019-08-02

3091 Atlas-based classification algorithms for identification of informative brain regions in fMRI data

Arco, J. E.; Diaz-Gutierrez, P.; Ramirez, J.; Ruz, M.

10.1101/446856 — neuroscience — Posted on 2019-08-02

3092 Yeast Bax Inhibitor (Bxi1p/Ybh3p) is a Calcium Channel in E. coli

Mullin, J.; Kalhorn, J.; Mello, N.; Raffa, A.; Strakosha, A.; Austriaco, N.

10.1101/722926 — molecular biology — Posted on 2019-08-02

3093 Macrophages utilize mitochondrial fission to enhance mROS production during responses to Streptococcus pneumoniae

Mohasin, M.; Balbirnie-Cumming, K.; Fisk, E.; Prestwich, E. C.; Russell, C. D.; Marshall, J.; Pridans, C.; Allen, S. P.; Shaw, P. J.; De Vos, K. J.; Hill, C. J.; Bullough, P.; Condliffe, A. M.; Mitchell, T. J.; Marriott, H. M.; Dockrell, D.

10.1101/722603 — immunology — Posted on 2019-08-02

3094 Single-cell RNA-seq highlights heterogeneity in human primary Wharton’s Jelly mesenchymal stem/stromal cells cultured in vitro

Sun, C.; Wang, L.; Wang, H.; Huang, T.; Zhang, X.

10.1101/723130 — cell biology — Posted on 2019-08-02

3095 Nutrient-dependent mTORC1 signaling in coral-algal symbiosis

Voss, P. A.; Gornik, S. G.; Jacobovitz, M. R.; Rupp, S.; Dörr, M. S.; Maegele, I.; Guse, A.

10.1101/723312 — cell biology — Posted on 2019-08-02

3096 Surveying the landscape of tRNA modifications by combining tRNA sequencing and RNA mass spectrometry

Kimura, S.; Dedon, P. C.; Waldor, M. K.

10.1101/723049 — biochemistry — Posted on 2019-08-02

3097 Individual differences in model-based planning are linked to the ability to infer latent structure

Rmus, M.; Ritz, H.; Hunter, L. E.; Bornstein, A. M.; Shenhav, A.

10.1101/723072 — animal behavior and cognition — Posted on 2019-08-02

3098 Minimal and mild hearing loss in children: Association with auditory perception, cognition, and communication problems

Moore, D.; Zobay, O.; Ferguson, M.

10.1101/723635 — neuroscience — Posted on 2019-08-02

3099 Tick-borne pathogens in ticks (Acari: Ixodidae) collected from various domestic and wild hosts in Corsica (France), a Mediterranean island environment

Grech-Angelini, S.; Stachurski, F.; Vayssier-Taussat, M.; Devillers, E.; Casabianca, F.; Lancelot, R.; Uilenberg, G.; Moutailler, S.

10.1101/723189 — molecular biology — Posted on 2019-08-02

3100 The generation of plasma cells and CD27-IgD- B cells during Hantavirus infection are associated with distinct pathological findings

Kerkman, P. F.; Dernstedt, A.; Tadala, L.; Mittler, E.; Dannborg, M.; Sundling, C.; Maleki, K. T.; Tauriainen, J.; Tuiskunen-Back, A.; Wigren Bystrom, J.; Ocaya, P.; Thunberg, T.; Jangra, R.; Roman-Sosa, G.; Guardado-Calvo, P.; Rey, F. A.; Klingstrom, J.; Chandran, K.; Puhar, A.; Ahlm, C.; Forsell, M.

10.1101/723585 — immunology — Posted on 2019-08-02

3101 Anthropocene refugia: integrating history and predictive modelling to assess the space available for biodiversity in a human-dominated world

Monsarrat, S.; Jarvie, S.; Svenning, J.-C.

10.1101/722132 — ecology — Posted on 2019-08-02

3102 Dual linker UNC-10/SYD-2 is sufficient to bind kinesin-3 UNC-104 to RAB-3 containing synaptic vesicles in the absence of the motor’s PH domain

Bhan, P.; Bayansan, O.; Chang, C.-Y.; Wagner, O.

10.1101/723247 — cell biology — Posted on 2019-08-02

3103 Molecular Dynamics Analysis of Mg2+-dependent Cleavage of a Pistol Ribozyme Reveals a Fail-safe Secondary Ion for Catalysis

Roy, R. N.; Joseph, N. N.; Steitz, T. A.

10.1101/596270 — biophysics — Posted on 2019-08-02

3104 Discovering the shared biology of cognitive traits determined by genetic overlap

Guimaraes, J. P.; Bralten, J.; Greven, C. U.; Franke, B.; Sprooten, E.; Beckmann, C. F.

10.1101/723643 — neuroscience — Posted on 2019-08-02

3105 Stimulating stopping? Investigating the effects of tDCS over the inferior frontal gyri and visual cortices.

Thunberg, C.; Messel, M. S.; Raud, L.; Huster, R.

10.1101/723296 — neuroscience — Posted on 2019-08-02

3106 Impoverished auditory cues limit engagement of brain networks controlling spatial selective attention

Deng, Y.; Choi, I.; Shinn-Cunningham, B. G.; Baumgartner, R.

10.1101/533117 — neuroscience — Posted on 2019-08-02

3107 An efficient method to clone TAL effector genes from Xanthomonas oryzae using Gibson assembly

Li, C.; Ji, C.; Huguet-Tapia, J. C.; White, F. F.; Dong, H.; Yang, B.

10.1101/723064 — microbiology — Posted on 2019-08-02

3108 Single cell transcriptomics reveals opioid usage evokes widespread suppression of antiviral gene program

Karagiannis, T. T.; Cleary, J. P.; Gok, B.; Martin, N. G.; Nelson, E. C.; Cheng, C. S.

10.1101/630574 — genomics — Posted on 2019-08-02

3109 Enhance genome editing efficiency and specificity by a quick CRISPR/Cas9 system

Hu, Y.; Luo, Z.; Li, J.; Wang, D.; Sun, H.-X.; Xiao, A.; Liu, D.; Cheng, Z.; Wu, J.; Shen, Y.; Xu, X.; Zhang, B.; Wang, J.; Gu, Y.; Yang, H.

10.1101/708404 — genetics — Posted on 2019-08-02

3110 The Linked Selection Signature of Rapid Adaptation in Temporal Genomic Data

Buffalo, V.; Coop, G.

10.1101/559419 — evolutionary biology — Posted on 2019-08-02

3111 Human body prediction of size and shape: a hormonal framework

van Vugt, J.

10.1101/722777 — cell biology — Posted on 2019-08-02

3112 Structural Basis and Mechanism of TrkA Activation by NGF through Ligand-Induced Rotation of Transmembrane Domain Dimers.

Franco, M. L.; Nadezhdin, K.; Mineev, K.; Goncharuk, S.; Arseniev, A.; Vilar, M.

10.1101/721233 — biochemistry — Posted on 2019-08-02

3113 Nested Active Learning for Efficient Model Contextualization and Parameterization

Cockrell, C.; Ozik, J.; Collier, N.; An, G.

10.1101/644401 — systems biology — Posted on 2019-08-02

3114 ALS Motor Neurons Exhibit Hallmark Metabolic Defects That Are Rescued by Nicotinamide and SIRT3 Activation

Hor, J.-H.; Mohamad Santosa, M.; Lim, V. J. W.; Ho, B. X.; Taylor, A.; Khong, Z. J.; Ravits, J.; Fan, Y.; Liou, Y.-C.; Soh, B.-S.; Ng, S.-Y.

10.1101/713651 — neuroscience — Posted on 2019-08-02

3115 Saccadic adaptation in the presence of artificial central scotomas

Song, Y.; Ouchene, L.; Khan, A. Z.

10.1101/719450 — neuroscience — Posted on 2019-08-02

3116 A neural network for online spike classification that improves decoding accuracy

Issar, D.; Williamson, R.; Khanna, S.; Smith, M. A.

10.1101/722934 — neuroscience — Posted on 2019-08-02

3117 Phylogenetic comparative methods are problematic when applied to gene trees with speciation and duplication nodes: correcting for biases in testing the ortholog conjecture

Begum, T.; Robinson-Rechavi, M.

10.1101/719336 — evolutionary biology — Posted on 2019-08-02

3118 Co-colonization interactions drive explicit frequency-dependent dynamics among N types

Madec, S.; Gjini, E.

10.1101/722587 — ecology — Posted on 2019-08-02

3119 PTP-3(LAR PTPR) promotes intramolecular folding of SYD-2(liprin-α) to inactivate UNC-104(KIF1A) in neurons

Muthaiyan Shanmugam, M.; Barmaver, S. N.; Huang, H.-Y.; Wagner, O.

10.1101/723288 — cell biology — Posted on 2019-08-02

3120 MMP2 As An Independent Prognostic Stratifier In Oral Cavity Cancers

Hoffmann, C.; Vacher, S.; Sirven, P.; Lecerf, C.; Massenet, L.; Moreira, A.; Surun, A.; Schnitzler, A.; Klijanienko, J.; Mariani, O.; Jeannot, E.; Badois, N.; Lesnik, M.; Choussy, O.; Le Tourneau, C.; Guillot-Delost, M.; Kamal, M.; Bieche, I.; Soumelis, V.

10.1101/723650 — cancer biology — Posted on 2019-08-02

3121 Classifying disease-associated variants using measures of protein activity and stability

Jepsen, M. M.; Fowler, D. M.; Hartmann-Petersen, R.; Stein, A.; Lindorff-Larsen, K.

10.1101/688234 — biophysics — Posted on 2019-08-02

3122 Facetto: Combining Unsupervised and Supervised Learning for Hierarchical Phenotype Analysis in Multi-Channel Image Data

Krueger, R.; Beyer, J.; Jang, W.-D.; Kim, N. W.; Sokolov, A.; Sorger, P. K.; Pfister, H.

10.1101/722918 — systems biology — Posted on 2019-08-02

3123 Role of synaptic inhibition in the coupling of the respiratory rhythms that underlie eupnea and sigh behaviors

Borrus, D. S.; Conradi Smith, G. D.; Del Negro, C. A.

10.1101/721829 — neuroscience — Posted on 2019-08-02

3124 Pathogenic Role of Delta 2 Tubulin in Bortezomib Induced Peripheral Neuropathy

Pero, M. E.; Meregalli, C.; Qu, X.; Kumar, A.; Shorey, M.; Rolls, M.; Tanji, K.; Brannagan, T.; Alberti, P.; Fumagalli, G.; Monza, L.; Cavaletti, G.; Bartolini, F.

10.1101/721852 — neuroscience — Posted on 2019-08-02

3125 Impact of second-generation antipsychotics on white matter microstructure in adolescent-onset psychosis.

Barth, C.; Lonning, V.; Gurholt, T. P.; Andreassen, O. A.; Myhre, A. M.; Agartz, I.

10.1101/721225 — neuroscience — Posted on 2019-08-02

3126 A role for DIS3L2 over human nonsense-mediated mRNA decay targets

da Costa, P. J.; Menezes, J.; Saramago, M.; Garcia-Moreno, J. F.; Santos, H. A.; Gama-Carvalho, M.; Arraiano, C. M.; Viegas, S. C.; Romao, L.

10.1101/722702 — molecular biology — Posted on 2019-08-02

3127 Pervasive differential splicing in Marek’s Disease Virus can discriminate CVI-988 vaccine strain from RB-1B virulent strain in chicken embryonic fibroblasts

Sadigh, Y.; Tahiri-Alaoui, A.; Spatz, S.; Nair, V.; Ribeca, P.

10.1101/723114 — genomics — Posted on 2019-08-02

3128 Distribution and abundance of bottlenose dolphin (Tursiops truncatus) over the French Mediterranean continental shelf

Labach, H.; Azzinari, C.; Barbier, M.; Cesarini, C.; Daniel, B.; David, L.; Dhermain, F.; Di-Meglio, N.; Guichard, B.; Jourdan, J.; Robert, N.; Roul, M.; Tomasi, N.; Gimenez, O.

10.1101/723569 — ecology — Posted on 2019-08-02

3129 Bee visitation and fruit quality in berries under protected cropping vary along the length of polytunnels

Hall, M.; Jones, J.; Rocchetti, M.; Wright, D.; Rader, R.

10.1101/722041 — ecology — Posted on 2019-08-02

3130 Stoichiometric constraints modulate the effects of temperature and nutrients on biomass distribution and community stability

Sentis, A.; Haegeman, B.; Montoya, J. M.

10.1101/589895 — ecology — Posted on 2019-08-02

3131 Simulating bipedal walking using a translating center of pressure

Potwar, K.; Lee, D.

10.1101/723445 — physiology — Posted on 2019-08-02

3132 Attenuated Dopamine Receptor Signaling in Nucleus Accumbens Core in a Rat Model of Chemically-Induced Neuropathy

Selley, D. E.; Lazenka, M. F.; Sim-Selley, L. J.; Potter, D. N.; Chartoff, E. H.; Carlezon, W. A.; Negus, S. S.

10.1101/722801 — pharmacology and toxicology — Posted on 2019-08-02

3133 Distinct Proximal and Distal Corticospinal Signals Embed Limb Dynamics Through the Modulation of Stiffness

Hardesty, R. L.; Ellaway, P. H.; Gritsenko, V.

10.1101/723056 — neuroscience — Posted on 2019-08-02

3134 Simulating emotions: An active inference model of emotional state inference and emotion concept learning

Smith, R.; Parr, T.; Friston, K. J.

10.1101/640813 — neuroscience — Posted on 2019-08-02

3135 Dopamine neuron ensembles signal the content of sensory prediction errors

Stalnaker, T.; Howard, J.; Takahashi, Y.; Gershman, S. J.; Kahnt, T.; Schoenbaum, G.

10.1101/723908 — neuroscience — Posted on 2019-08-02

3136 Gi-Coupled Receptor Activation Potentiates Piezo2 Currents via Gβγ

Del Rosario, J. S.; Yudin, Y.; Su, S.; Hartle, C.; Mirshahi, T.; Rohacs, T.

10.1101/722637 — neuroscience — Posted on 2019-08-02

3137 Altering mammalian transcription networking with ADAADi: An inhibitor of ATP-dependent chromatin remodeling

Rakesh, R.; Hussain, S.; Goel, K.; Sharma, S.; Bisht, D.; Chanana, U. B.; Hockensmith, J. W.; Muthuswami, R.

10.1101/723593 — molecular biology — Posted on 2019-08-02

3138 Topological stress is responsible for the detrimental outcomes of head-on replication-transcription conflicts

Lang, K. S.; Merrikh, H.

10.1101/691188 — molecular biology — Posted on 2019-08-02

3139 A visualizable hepatitis A virus and hepatitis C virus coinfection model in vitro: coexistence of two hepatic viruses under limited competition in viral RNA synthesis

Jiang, W.; Long, G.; Ma, P.

10.1101/709071 — microbiology — Posted on 2019-08-02

3140 Yersiniabactin producing AIEC promote inflammation-associated fibrosis in gnotobiotic Il10-/- mice

Ellermann, M.; Gharaibeh, R.; Fulbright, L.; Dogan, B.; Moore, L. N.; Broberg, C. A.; Lopez, L. R.; Rothemich, A. M.; Herzog, J.; Rogala, A.; Gordon, I. O.; Rieder, F.; Brouwer, C. R.; Simpson, K. W.; Jobin, C.; Sartor, R. B.; Arthur, J. C.

10.1101/723148 — microbiology — Posted on 2019-08-02

3141 Culex saltanensis and Culex interfor (Diptera: Culicidae) are susceptible and competent to transmit St. Louis encephalitis virus (Flavivirus: Flaviviridae) in central Argentina.

Beranek, M.; Quaglia, A.; Peralta, G.; Flores, F.; Stein, M.; Diaz, A.; Almiron, W.; Contigiani, M.

10.1101/722579 — microbiology — Posted on 2019-08-02

3142 Depiction of secondary metabolites and antifungal activity of Bacillus velezensis DTU001

Devi, S.; Kiesewalter, H. T.; Kovacs, R.; Frisvad, J.; Weber, T.; Larsen, T. O.; Kovacs, A. T.; Ding, L.

10.1101/577817 — microbiology — Posted on 2019-08-02

3143 Interplay of primary bovine lymphocytes and Mycobacterium avium subsp. paratuberculosis shows distinctly different proteome changes and immune pathways in host-pathogen interaction

Kleinwort, K. J. H.; Hauck, S. M.; Degroote, R. L.; Scholz, A. M.; Hoelzel, C.; Maertlbauer, E. P.; Deeg, C. A. A.

10.1101/578187 — immunology — Posted on 2019-08-02

3144 Immune Profiling of Atherosclerotic Plaques Identifies Innate and Adaptive Dysregulations Associated with Ischemic Cerebrovascular Events

Fernandez, D. M.; Rahman, A. H.; Fernandez, N.; Chudnovskiy, A.; Amir, E.-a. D.; Amadori, L.; Khan, N. S.; Wong, C. K.; Shamailova, R.; Hill, C.; Wang, Z.; Remark, R.; Li, J. R.; Pina, C.; Faries, C.; Awad, A. J.; Moss, N.; Bjorkegren, J. L. M.; Kim-Schulze, S.; Gnjatic, S.; Maayan, A.; Mocco, J.; Faries, P.; Merad, M.; Giannarelli, C.

10.1101/721688 — immunology — Posted on 2019-08-02

3145 Genome-wide development of miRNA-based SSR markers in Cleistogenes songorica with their transferability analysis to gramineae and non- gramineae species

Kanzana, G.; Zhang, Y.; Ma, T.; Liu, W.; Wu, F.; Yan, Q.; Min, X.; Yan, Z.; Muvunyi, B. P.; Li, J.; Zhang, Z.; Zhao, Y.; Zhang, J.

10.1101/723544 — genomics — Posted on 2019-08-02

3146 Identifying branch-specific positive selection throughout the regulatory genome using an appropriate neutral proxy

Berrio, A.; Haygood, R.; Wray, G. A.

10.1101/722884 — evolutionary biology — Posted on 2019-08-02

3147 Temporal dynamics of nitrogen cycle gene diversity in a hyporheic microbiome

Nelson, W. C.; Graham, E. B.; Crump, A. R.; Fansler, S. J.; Arntzen, E. V.; Kennedy, D. W.; Stegen, J. C.

10.1101/722785 — ecology — Posted on 2019-08-02

3148 Targeted expansion of Protected Areas to maximise the persistence of terrestrial mammals

Mogg, S.; Fastre, C.; Jung, M.; Visconti, P.

10.1101/608992 — ecology — Posted on 2019-08-02

3149 Glucocorticoids Induce the Expansion of an Immature Human CFU-E Population

Ashley, R.; Yan, H.; Wang, N.; Hale, J.; Dulmovits, B. M.; Papoin, J.; Olive, M.; Udeshi, N. D.; Carr, S. A.; Vlachos, A.; Lipton, J. M.; Da Costa, L.; Hillyer, C.; Kinet, S.; Taylor, N.; Mohandas, N.; Narla, A.; Blanc, L.

10.1101/722850 — developmental biology — Posted on 2019-08-02

3150 Essential role of Bone morphogenetic protein 15 in porcine ovarian and follicular development and ovulation

Qin, Y.; Tang, T.; Li, W.; Liu, Z.; Yang, X.; Shi, X.; Sun, G.; Liu, X.; Wang, M.; Liang, X.; Cong, P.; Mo, D.; Liu, X.; Chen, Y.; He, Z.

10.1101/724096 — developmental biology — Posted on 2019-08-02

3151 NAD+ repletion rescues female fertility during reproductive ageing

Bertoldo, M. J.; Listijono, D. R.; Ho, W.-H. J.; Riepsamen, A. H.; Jin, X. L.; Selesniemi, K.; Goss, D. M.; Mahbub, S.; Campbell, J. M.; Habibalahi, A.; Loh, W.-G. N.; Youngson, N. A.; Maniam, J.; Wong, A. S. A.; Richani, D.; Li, C.; Zhao, Y.; Marinova, M.; Kim, L.-J.; Lau, L.; Wu, R. M.; Mikolaizak, A. S.; Araki, T.; Le Couteur, D. G.; Turner, N.; Morris, M. J.; Walters, K. A.; Goldys, E.; O'Neill, C.; Gilchrist, R. B.; Sinclair, D. A.; Homer, H. A.; Wu, L. E.

10.1101/721985 — developmental biology — Posted on 2019-08-02

3152 Depletion of intermediate filament IFB-1 negatively affects mobility and physiological function of mitochondria in C. elegans sensory neurons

Chang, Y.; Muthaiyan Shanmugam, M.; Bhan, P.; Barmaver, S. N.; Wu, G.-H.; Wagner, O. I.

10.1101/723205 — cell biology — Posted on 2019-08-02

3153 Chemotaxis and swarming in differentiated HL60 neutrophil-like cells

Babatunde, K. A.; Wang, X.; Hopke, A.; Mantel, P.-Y.; Irimia, D.

10.1101/714345 — cell biology — Posted on 2019-08-02

3154 Live-cell single-molecule analysis of β2-adrenergic receptor diffusion dynamics and confinement

Schwenzer, N.; Bussmann, H.; Franken, S.; Haeberlein, H.

10.1101/406488 — cell biology — Posted on 2019-08-02

3155 Experimental study of lumbar ligamentum flavum hypertrophy induced in bipedal mice

Zheng, Z.; Qian, L.; Ao, X.; Li, P.; Zhang, J.; Peng, Y.; Chu, J.; Jiang, T.; Li, C.; Lian, Z.; Yan, B.; Zhang, Z.

10.1101/723239 — biophysics — Posted on 2019-08-02

3156 Addressing the Embeddability Problem in Transition Rate Estimation

Goolsby, C.; Moradi, M.

10.1101/707919 — biophysics — Posted on 2019-08-02

3157 Measurement of Atom Resolvability in CryoEM Maps with Q-scores

Pintilie, G.; Zhang, K.; Su, Z.; Li, S.; Schmid, M. F.; Chiu, W.

10.1101/722991 — biochemistry — Posted on 2019-08-02

3158 The computation of directional selectivity in the Drosophila OFF motion pathway

Gruntman, E.; Romani, S.; Reiser, M. B.

10.1101/721902 — neuroscience — Posted on 2019-08-02

3159 Cross-feeding modulates the rate and mechanism of antibiotic resistance evolution in a model microbial community of Escherichia coli and Salmonella enterica

Adamowicz, E. M.; Muza, M. A.; Chacon, J. M.; Harcombe, W. R.

10.1101/722561 — evolutionary biology — Posted on 2019-08-02

3160 Adaptive metabolic strategies in consumer-resource models

Pacciani-Mori, L.; Giometto, A.; Suweis, S.; Maritan, A.

10.1101/385724 — biophysics — Posted on 2019-08-02

3161 Energy expenditure and body composition changes after an isocaloric ketogenic diet in overweight and obese men: a secondary analysis of energy expenditure and physical activity

Friedman, M. I.; Appel, S.

10.1101/383752 — physiology — Posted on 2019-08-02

3162 Quantification of the effect of site-specific histone acetylation on chromatin remodeling rate

Wakamori, M.; Okabe, K.; Ura, K.; Funatsu, T.; Takinoue, M.; Umehara, T.

10.1101/679944 — biophysics — Posted on 2019-08-02

3163 Adaptive rewiring based on diffusion balances stability and plasticity in weighted networks while evolving ‘brain-like’ structure

Rentzeperis, I.; Leeuwen, C. v.

10.1101/723353 — neuroscience — Posted on 2019-08-02

3164 Incidence of mortality and its predictors among adult Visceral Leishmaniasis patients at University of Gondar Comprehensive Specialized Hospital, Ethiopia

Yeshaw, Y.; Tsegaye, A. T.; Nigatu, S. G.

10.1101/723379 — microbiology — Posted on 2019-08-02

3165 Land snail dispersal, abundance and diversity on green roofs

McKinney, M.; Gladstone, N. S.; Lentz, J. G.; Jackson, F. A.

10.1101/723395 — ecology — Posted on 2019-08-02

3166 Development of the mandibular curve of Spee and maxillary compensating curve: A finite element model

Marshall, S.; Kruger, K.; Franciscus, R. G.; Southard, T. E.

10.1101/723429 — developmental biology — Posted on 2019-08-02

3167 Cross-cultural adaptation and psychometric evaluation of the Yoruba version of Oswestry disability index

Mbada, C. E.; Oguntoyinbo, O. E.; Fasuyi, F. O.; Idowu, O.; Odole, A. C.; Ayanniyi, O.; Johnson, O. E.; Orimolade, E. A.; Fatoye, F.

10.1101/723437 — scientific communication and education — Posted on 2019-08-02

3168 ABA-dependent and ABA-independent functions of RCAR5/PYL11 in response to cold stress

Lim, C. W.; Lee, S. C.

10.1101/723627 — plant biology — Posted on 2019-08-02

3169 Identification and characterization of constrained non-exonic bases lacking predictive epigenomic and transcription factor binding annotations

Grujic, O.; Phung, T. N.; Kwon, S. B.; Arneson, A.; Lee, Y.; Lohmueller, K. E.; Ernst, J.

10.1101/722876 — genomics — Posted on 2019-08-02

3170 High-resolution QTL mapping with Diversity Outbred mice identifies genetic variants that impact gut microbiome composition

Schlamp, F.; Zhang, D. Y.; Cosgrove, E.; Simecek, P.; Edwards, M.; Goodrich, J. K.; Ley, R. E.; Churchill, G. A.; Clark, A. G.

10.1101/722744 — genetics — Posted on 2019-08-02

3171 Combining case-control status and family history of disease increases association power

Hujoel, M. L. A.; Gazal, S.; Loh, P.-R.; Patterson, N.; Price, A. L.

10.1101/722645 — genetics — Posted on 2019-08-02

3172 K-mer counting with low memory consumption enables fast clustering of single-cell sequencing data without read alignment

Shi, C. H.; Yip, K. Y.

10.1101/723833 — bioinformatics — Posted on 2019-08-02

3173 Machine Learning Models of Breast Cancer Risk Prediction

Islam, M. M.; Poly, T. N.

10.1101/723304 — bioinformatics — Posted on 2019-08-02

3174 Optimized visual stimuli for BCI with hessenberg decomposition based extreme learning machine

Yayik, A.; Kutlu, Y.; Altan, G.

10.1101/700898 — neuroscience — Posted on 2019-08-02

3175 Regulation of FLIP(L) and TRAIL-R2 signalling by the SCFSkp2 Ubiquitin Ligase Complex

Longley, D. B.; Roberts, J. Z.; Holohan, C.; Sessler, T.; Fox, J.; Higgins, C.; Espona-Fiedler, M.; Majkut, J.; Crawford, N. T.; Riley, J. S.; Khawaja, H.; Humphreys, L. M.; Ferris, J.; Evergren, E.; Moynagh, P.; McDade, S. S.

10.1101/723718 — molecular biology — Posted on 2019-08-02

3176 Iron chelation by curcumin suppress both curcumin-induced autoghagy and cell death together with iron overload neoplastic transformation

Rainey, N. E.; Moustapha, A.; Saric, A.; Nicolas, G.; Sureau, F.; Petit, P. X.

10.1101/722942 — cell biology — Posted on 2019-08-02

3177 Alpha oscillations in the human brain implement distractor suppression independent of target selection

Woestmann, M.; Alavash, M.; Obleser, J.

10.1101/721019 — neuroscience — Posted on 2019-08-02

3178 MADS-box factor AGL16 negatively regulates drought resistance via stomatal density and stomatal movement

Xiang, C.; Zhao, P.-X.; Miao, Z.-Q.; Zhang, J.; Liu, Q.-Q.

10.1101/723106 — plant biology — Posted on 2019-08-02

3179 In-silico definition of the Drosophila melanogaster matrisome

Davis, M. N.; Horne-Badovinac, S.; Naba, A.

10.1101/722868 — cell biology — Posted on 2019-08-02

3180 Defining how Pak1 regulates cell polarity and cell division in fission yeast

Magliozzi, J. O.; Sears, J.; Brady, M.; Opalko, H. E.; Kettenbach, A. N.; Moseley, J. B.

10.1101/722900 — cell biology — Posted on 2019-08-02

3181 Visualising nascent chain dynamics at the ribosome exit tunnel by cryo-electron microscopy

Javed, A.; Cabrita, L.; Cassaignau, A. M. E.; Wlodarski, T.; Christodoulou, J.; Orlova, E. V.

10.1101/722611 — biophysics — Posted on 2019-08-02

3182 Statistical modeling of bacterial promoter sequences for regulatory motif discovery with the help of transcriptome data: application to Listeria monocytogenes

Nicolas, P.; Sultan, I.; Fromion, V.; Schbath, S.

10.1101/723346 — bioinformatics — Posted on 2019-08-02

3183 Quantitative assessment of fecal contamination in multiple environmental sample types in urban communities in Dhaka, Bangladesh using SaniPath microbial approach

Amin, N.; Rahman, M.; Raj, S.; Ali, S.; Green, J.; Das, S.; Doza, S.; Mondol, M. H.; Wang, Y.; Islam, M. A.; Alam, M.-U.; Huda, T. M. N.; Haque, S.; Unicomb, L.; Joseph, G.; Moe, C. L.

10.1101/723528 — microbiology — Posted on 2019-08-02

3184 Polarized Lung Inflammation and Tie2/Angiopoietin-Mediated Endothelial Dysfunction during Severe Orientia tsutsugamushi Infection

Trent, B.; Liang, Y.; Xing, Y.; Esqueda, M.; Wei, Y.; Cho, N.-H.; Kim, H.-I.; Kim, Y.-S.; Shelite, T.; Cai, J.; Sun, J.; Bouyer, D.; Liu, J.; Soong, L.

10.1101/723387 — microbiology — Posted on 2019-08-02

3185 A loss-of-function mutation in Itgal contributes to the high susceptibility of Collaborative Cross strain CC042 to Salmonella infections

Zhang, J.; Teh, M.; Kim, J.; Eva, M. M.; Cayrol, R.; Meade, R. K.; Nijnik, A.; Montagutelli, X.; Malo, D.; Jaubert, J.

10.1101/723478 — immunology — Posted on 2019-08-02

3186 Lymphocyte subpopulations and mast cells intestinal changes as indicators of inflammatory bowel disease in dogs

Espinoza-Zambrano, A.; Gonzalez, C.

10.1101/723536 — immunology — Posted on 2019-08-02

3187 Case-base-control designs

Elhezzani, N. S.; Bergsma, W.; Weale, M.

10.1101/723452 — genetics — Posted on 2019-08-02

3188 A Signal Demodulation-based Method for the Early Detection of Cheyne-Stokes Respiration

Guyot, P.; Djermoune, E.-H.; Chenel, B.; Bastogne, T.

10.1101/723502 — physiology — Posted on 2019-08-02

3189 Irrelevant auditory and tactile signals interact with the visual target onset and modulate saccade latencies, not visual signals

Vidal, M.; Desantis, A.; Madelain, L.

10.1101/723510 — neuroscience — Posted on 2019-08-02

3190 Intestinal parasitic infection among household contacts of primary cases, a comparative cross-sectional study

Feleke, B. E.; Beyene, M. B.; Feleke, T. E.; Jember, T. H.; Abera, B.

10.1101/723494 — microbiology — Posted on 2019-08-02

3191 Phenotype and functionality of follicular helper T cells in patients with acute dengue infection

Wijesinghe, A. M.; Gamage, J.; Goonewardana, H. S. I.; Gomes, L.; Jayathilaka, D.; Wijeratne, D. T.; de Alwis, R.; Jeewandara, C.; Wijewickrama, A.; Ogg, G.; Malavige, G. N.

10.1101/723460 — immunology — Posted on 2019-08-02

3192 Curated Multiple Sequence Alignment for the Adenomatous Polyposis Coli (APC) Gene and Accuracy of In Silico Pathogenicity Predictions

Karabachev, A. D.; Martini, D. J.; Hermel, D. J.; Solcz, D.; Richardson, M. E.; Pesaran, T.; Sarkar, I. N.; Greenblatt, M. S.

10.1101/723320 — genetics — Posted on 2019-08-02

3193 Effects of trap confinement on personality measurements in two terrestrial rodents

Brehm, A. M.; Tironi, S.; Mortelliti, A.

10.1101/723403 — ecology — Posted on 2019-08-02

3194 Screening the MMV Open Access Pathogen box unveils novel and potent inhibitors of Amoebiasis agent: Entamoeba histolytica

Boyom, F. F.; Kouipou, R. M. T.; Dize, D.; Laleu, B.; Fokou, P. V. T.; Kemgne, E. A. M.

10.1101/723361 — pharmacology and toxicology — Posted on 2019-08-02

3195 Extending site-based observations to predict the spatial patterns of vegetation structure and composition

McNellie, M.; Oliver, I.; Ferrier, S.; Newell, G.; Manion, G.; Griffioen, P.; White, M.; Koen, T.; Somerville, M.; Gibbons, P.

10.1101/715797 — ecology — Posted on 2019-08-01

3196 To Improve Protein Sequence Profile Prediction through Image Captioning on Pairwise Residue Distance Map

Chen, S.; Sun, Z.; Lu, Y.; Zhao, H.; Yang, Y.

10.1101/628917 — bioinformatics — Posted on 2019-08-01

3197 Comparisons of dual isogenic human iPSC pairs identify functional alterations directly caused by an epilepsy associated SCN1A mutation

Xie, Y.; Ng, N. N.; Safrina, O. S.; Ramos, C. M.; Ess, K. C.; Schwartz, P. H.; Smith, M. A.; O'Dowd, D. K.

10.1101/524835 — neuroscience — Posted on 2019-08-01

3198 Using multiple measurements of tissue to estimate subject- and cell-type-specific gene expression

Wang, J.; Devlin, B.; Roeder, K.

10.1101/379099 — bioinformatics — Posted on 2019-08-01

3199 Structural variation of the malaria-associated human glycophorin A-B-E region

Louzada, S.; Algady, W. K.; Weyell, E.; Zuccherato, L. W.; Brajer, P.; Almalki, F.; Scliar, M. O.; Naslavsky, M.; Yamamoto, G. L.; Duarte, Y. A. O.; Passos-Bueno, M. R.; Zatz, M.; Yang, F.; Hollox, E. J.

10.1101/722371 — genetics — Posted on 2019-08-01

3200 Structural Basis and Mechanism of TrkA Activation by NGF through Ligand-Induced Rotation of Transmembrane Domain Dimers.

Franco, M. L.; Nadezhdin, K.; Mineev, K.; Goncharuk, S.; Arseniev, A.; Vilar, M.

10.1101/721233 — biochemistry — Posted on 2019-08-01

3201 Viral rebound kinetics following single and combination immunotherapy for HIV/SIV

Prague, M.; Gerold, J. M.; Balelli, I.; Pasin, C.; Li, J. Z.; Barouch, D. H.; Whitney, J. B.; Hill, A. L.

10.1101/700401 — systems biology — Posted on 2019-08-01

3202 Female mice are resilient to age-related decline of substantia nigra dopamine neuron firing parameters

Howell, R.; Dominguez-Lopez, S.; Ocanas, S.; Freeman, W. M.; Beckstead, M. J.

10.1101/621680 — neuroscience — Posted on 2019-08-01

3203 Analysis of miRNA inhibitors Efficacy using Capillary Electrophoresis with Laser-Induced Fluorescence

Chae, D.-K.; Ban, E.

10.1101/566786 — molecular biology — Posted on 2019-08-01

3204 Effects of the copper IUD on composition of the vaginal microbiota in the olive baboon

Eastman, A. J.; Sack, D.; Chai, D.; Bassis, C. M.; Carter, K. A.; Young, V. B.; Bergin, I. L.; Bell, J. D.

10.1101/720185 — microbiology — Posted on 2019-08-01

3205 Extending site-based observations to predict the spatial patterns of vegetation structure and composition

McNellie, M.; Oliver, I.; Ferrier, S.; Newell, G.; Manion, G.; Griffioen, P.; White, M.; Koen, T.; Somerville, M.; Gibbons, P.

10.1101/715797 — ecology — Posted on 2019-08-01

3206 Computational Design of Myristoylated Cell Penetrating Peptides Targeting Oncogenic K-Ras.G12D at the Effector Binding Membrane Interface

Li, Z.; Buck, M.

10.1101/565945 — biophysics — Posted on 2019-08-01

3207 Spatially resolved transcriptomics reveals plant host responses to pathogens

Giolai, M.; Verweij, W.; Lister, A.; Heavens, D.; Macaulay, I.; Clark, M. D.

10.1101/720086 — genomics — Posted on 2019-08-01

3208 A compartment size dependent selective threshold limits mutation accumulation in hierarchical tissues

Grajzel, D.; Derenyi, I.; Szollosi, G. J.

10.1101/719575 — evolutionary biology — Posted on 2019-08-01

3209 Developmental Genome-Wide DNA Methylation Asymmetry Between Mouse Placenta and Embryo

Legault, L.-M.; Doiron, K.; Lemieux, A.; Caron, M.; Chan, D.; Lopes, F. L.; Bourque, G.; Sinnett, D.; McGraw, S.

10.1101/718247 — developmental biology — Posted on 2019-08-01

3210 Genome-scale profiling reveals higher proportions of phylogenetic signal in non-coding data

Literman, R.; Schwartz, R. S.

10.1101/712646 — bioinformatics — Posted on 2019-08-01

3211 Carbon dots for efficient siRNA delivery and gene silencing in plants

Schwartz, S. H.; Hendrix, B.; Hoffer, P.; Sanders, R. A.; Zheng, W.

10.1101/722595 — plant biology — Posted on 2019-08-01

3212 Odorant receptors from Culex quinquefasciatus and Aedes aegypti sensitive to floral compounds

Zeng, F.; Xu, P.; Leal, W.

10.1101/721878 — physiology — Posted on 2019-08-01

3213 A Mac2-positive progenitor-like microglial population survives independent of CSF1R signaling in adult mouse brain

Zhan, L.; Sohn, P. D.; Zhou, Y.; Li, Y.; Gan, L.

10.1101/722090 — neuroscience — Posted on 2019-08-01

3214 Identification of novel neuroprotective loci modulating ischemic stroke volume in a cross between wild-derived inbred mouse strains

Lee, H. K.; Widmayer, S. J.; Huang, M.-N.; Aylor, D. L.; Marchuk, D.

10.1101/591669 — genetics — Posted on 2019-08-01

3215 When be Temperate: On the Fitness Benefits of Lysis vs. Lysogeny

Li, G.; Cortez, M. H.; Weitz, J. S.

10.1101/709758 — ecology — Posted on 2019-08-01

3216 Character integration, preadaptation, and the evolution of evolvability in apes

Parins-Fukuchi, C.

10.1101/622134 — evolutionary biology — Posted on 2019-08-01

3217 From reporters to endogenous genes: the impact of the first five codons on translation efficiency in Escherichia coli

Moreira, M. H.; Barros, G. C.; Requiao, R. D.; Rossetto, S.; Domitrovic, T.; Palhano, F. L.

10.1101/699900 — bioinformatics — Posted on 2019-08-01

3218 Behavioral training of marmosets and electrophysiological recording from the cerebellum

Sedaghat-Nejad, E.; Herzfeld, D. J.; Hage, P.; Karbasi, K.; Palin, T.; Wang, X.; Shadmehr, R.

10.1101/683706 — neuroscience — Posted on 2019-08-01

3219 Large-scale examination of neuropsychiatric, cognitive and cardiovascular phenotypic associations with 15q11.2 BP1-BP2 deletion in ~500,000 UK Biobank individuals

Williams, S. G.; Nakev, A.; Guo, H.; Frain, S.; Tenin, G.; Liakhovitskaia, A.; Saha, P.; Priest, J.; Hentges, K.; Keavney, B.

10.1101/722504 — genetics — Posted on 2019-08-01

3220 Evolutionary constraints in regulatory networks defined by partial order between phenotypes

Kogenaru, M.; Nghe, P.; Poelwijk, F. J.; Tans, S. J.

10.1101/722520 — evolutionary biology — Posted on 2019-08-01

3221 An Essential Role for Argonaute 2 in EGFR-KRAS Signaling in Pancreatic Cancer Development

Shankar, S.; Tien, J.; Siebenaler, R. F.; Chugh, S.; Dommeti, V. L.; Zelenka-Wang, S.; Waninger, J.; Juckette, K. M.; Xu, A.; Wang, X.-M.; Mody, M.; Eyunni, S.; Goodrum, A.; Tsaloff, G.; Zhang, Y.; Apel, I. J.; Wang, L.; Siddiqui, J.; Smith, R. D.; Carlson, H. A.; Tesmer, J. J.; Cao, X.; Shi, J.; Kumar-Sinha, C.; Crawford, H.; Chinnaiyan, A. M.

10.1101/227264 — cancer biology — Posted on 2019-08-01

3222 Secondary evolve and re-sequencing: an experimental confirmation of putative selection targets without phenotyping

Burny, C.; Nolte, V.; Nouhaud, P.; Dolezal, M.; Schloetterer, C.

10.1101/722488 — molecular biology — Posted on 2019-08-01

3223 Genetic tool development in marine protists: Emerging model organisms for experimental cell biology

Drahomira, F.; Nisbet, R. E. R.; Lukes, J.

10.1101/718239 — ecology — Posted on 2019-08-01

3224 LSD1-mediated enhancer silencing enables endocrine cell development through attenuation of retinoic acid signalling.

Vinckier, N. K.; Patel, N. A.; Wang, A.; Wang, J.; Shih, H.-P.; Wang, J.; Jhala, U. S.; Rosenfeld, M. G.; Benner, C.; Sander, M.

10.1101/716647 — developmental biology — Posted on 2019-08-01

3225 Crl activates transcription by stabilizing the active conformation of the master stress factor σS

Xu, J.; Cui, K.; Shen, L.; Shi, J.; Li, L.; You, L.; Fang, C.; Zhao, G.; Feng, Y.; Yang, B.; Zhang, Y.

10.1101/721944 — biochemistry — Posted on 2019-08-01

3226 Measuring Robustness of Brain Networks in Autism Spectrum Disorder with Ricci Curvature

Simhal, A. K.; Carpenter, K. L. H.; Nadeem, S.; Kurtzberg, J.; Song, A.; Tannenbaum, A.; Sapiro, G.; Dawson, G.

10.1101/722025 — neuroscience — Posted on 2019-08-01

3227 Adaptation to mutational inactivation of an essential E. coli gene converges to an accessible suboptimal fitness peak.

Rodrigues, J. V.; Shakhnovich, E.

10.1101/552240 — evolutionary biology — Posted on 2019-08-01

3228 Measuring localization confidence for quantifying accuracy and heterogeneity in single-molecule super-resolution microscopy

Mazidi, H.; Ding, T.; Nehorai, A.; Lew, M. D.

10.1101/721837 — biophysics — Posted on 2019-08-01

3229 XenoCell: classification of cellular barcodes in single cell experiments from xenograft samples

Cheloni, S.; Hillje, R.; Luzi, L.; Pelicci, P. G.; Gatti, E.

10.1101/679183 — bioinformatics — Posted on 2019-08-01

3230 Hidden neural states underlie canary song syntax

Cohen, Y.; Shen, J.; Semu, D.; Leman, D. P.; Liberti, W. A.; Perkins, N. L.; Liberti, D. C.; Kotton, D.; Gardner, T. J.

10.1101/561761 — neuroscience — Posted on 2019-08-01

3231 A Robust Model of Gated Working Memory

Strock, A.; Hinaut, X.; Rougier, N. P.

10.1101/589564 — neuroscience — Posted on 2019-08-01

3232 Negative selection on complex traits limits genetic risk prediction accuracy between populations

Durvasula, A.; Lohmueller, K.

10.1101/721936 — genetics — Posted on 2019-08-01

3233 Anthropocene refugia: integrating history and predictive modelling to assess the space available for biodiversity in a human-dominated world

Monsarrat, S.; Jarvie, S.; Svenning, J.-C.

10.1101/722132 — ecology — Posted on 2019-08-01

3234 Long-term functional culture and in vitro manipulation of adult mouse cardiomyocytes

Callaghan, N. I.; Lee, S.-H.; Hadipour-Lakmehsari, S.; Lee, X. A.; Siraj, M. A.; Driouchi, A.; Yip, C. M.; Husain, M.; Simmons, C. A.; Gramolini, A. O.

10.1101/721514 — cell biology — Posted on 2019-08-01

3235 Transposon-mediated, cell type-specific transcription factor recording in the mouse brain

Cammack, A. J.; Moudgil, A.; Lagunas, T.; Chen, J.; Vasek, M. J.; Shabsovich, M.; McCullough, K.; He, J.; Chen, X.; Hooda, M.; Wilkinson, M. N.; Miller, T. M.; Mitra, R. D.; Dougherty, J. D.

10.1101/538504 — neuroscience — Posted on 2019-08-01

3236 Stimulus Onset Hub: An open-source, low latency, and opto-isolated trigger box for neuroscientific research replicability and beyond.

Davis, C. E.; Martin, J. G.; Thorpe, S. J.

10.1101/721803 — neuroscience — Posted on 2019-08-01

3237 Telomeric Double Strand Breaks Facilitate Formation of 5’ C-Rich Overhangs in G1 Human Cells

Nelson, C. B.; Alturki, T.; Taylor, L.; Maranon, D. G.; Muraki, K.; Murnane, J. P.; Bailey, S. M.

10.1101/720565 — molecular biology — Posted on 2019-08-01

3238 Protection induced by anti-PD-1 and anti-PD-L1 treatment in Leishmania amazonensis-infected BALB/c mice

da Fonseca-Martins, A. M.; Ramos, T. D.; Pratti, J. E.; Firmino-Cruz, L.; Gomes, D. C.; Soong, L.; Saraiva, E.; de Matos Guedes, H. L.

10.1101/721894 — immunology — Posted on 2019-08-01

3239 Inferring immunological control mechanisms from TKI dose alterations in CML patients

Haehnel, T.; Baldow, C.; Fassoni, A. C.; Guilhot, J.; Guilhot, F.; Saussele, S.; Mustjoki, S.; Jilg, S.; Jost, P. J.; Dulucq, S.; Mahon, F.-X.; Roeder, I.; Glauche, I.

10.1101/722546 — systems biology — Posted on 2019-08-01

3240 Functional characterization of Ralstonia insidiosa, a bona fide resident at the maternal-fetal interface

Parnell, L. A.; Willsey, G. G.; Joshi, C. S.; Yin, Y.; Wargo, M. J.; Mysorekar, I. U.

10.1101/721977 — microbiology — Posted on 2019-08-01

3241 Yeast volatomes differentially effect larval feeding in an insect herbivore

Ljunggren, J.; Borrero-Echeverry, F.; Chakraborty, A.; Lindblom, T. U. T.; Hedenstroem, E.; Karlsson, M.; Witzgall, P.; Bengtsson, M.

10.1101/721845 — microbiology — Posted on 2019-08-01

3242 Metabolic rate is negatively linked to adult survival but does not explain latitudinal differences in songbirds

Boyce, A. J.; Mouton, J.; Lloyd, P.; Wolf, B.; Martin, T. E.

10.1101/721779 — evolutionary biology — Posted on 2019-08-01

3243 Spatial simulation of co-designed land-cover change scenarios in New England: Alternative futures and their consequences for conservation priorities

Thompson, J.; Plisinski, J.; Fallon Lambert, K.; Duveneck, M.; Morreale, L.; McBride, M.; Graham MacLean, M.; Weis, M.; Lee, L.

10.1101/722496 — ecology — Posted on 2019-08-01

3244 Herbivore intraspecific variation and evolutionary divergence drive trophic cascade strength

Sentis, A.; Bertram, R.; Dardenne, N.; Simon, J.-C.; Magro, A.; Pujol, B.; Danchin, E.; Hemptinne, J.-L.

10.1101/722140 — ecology — Posted on 2019-08-01

3245 Integrative x-ray structure and molecular modeling for the rationalization of procaspase-8 inhibitor potency and selectivity

Xu, J. H.; Eberhardt, J.; Hill-Payne, B.; Gonzalez-Paez, G. E.; Castellon, J. O.; Cravatt, B. F.; Forli, S.; Wolan, D. W.; Backus, K. M.

10.1101/721951 — biochemistry — Posted on 2019-08-01

3246 Impaired Therapeutic Efficacy of Bone Marrow Cells from Post-Myocardial Infarction Patients in the TIME and LateTIME Clinical Trials

Wang, X.; Derakhshandeh, R.; Rodriguez, H. J.; Han, D. D.; Kostyushev, D. S.; Henry, T. D.; Traverse, J. H.; Moye, L.; Simari, R. D.; Taylor, D. A.; Springer, M. L.

10.1101/721860 — physiology — Posted on 2019-08-01

3247 Maternal circulating syncytiotrophoblast-derived extracellular vesicles contain biologically active 5’-tRNA halves

Cooke, W. R.; Cribbs, A.; Zhang, W.; Kandzija, N.; Motta-Mejia, C.; Dombi, E.; Ri, R.; Cerdeira, A. S.; Redman, C.; Vatish, M.

10.1101/721795 — physiology — Posted on 2019-08-01

3248 Mesolimbic dopamine D2 receptors and neural representations of subjective value

Castrellon, J. J.; Young, J. S.; Dang, L. C.; Cowan, R. L.; Zald, D. H.; Samanez-Larkin, G. R.

10.1101/718858 — neuroscience — Posted on 2019-08-01

3249 Validating the Cyc2 neutrophilic Fe oxidation pathway using meta-omics of Zetaproteobacteria iron mats at marine hydrothermal vents

McAllister, S. M.; Polson, S. W.; Butterfield, D. A.; Glazer, B. T.; Sylvan, J. B.; Chan, C. S.

10.1101/722066 — microbiology — Posted on 2019-08-01

3250 Genome-wide analysis of Corsican population reveals a close affinity with Northern and Central Italy

Tamm, E.; Di Cristofaro, J.; Mazieres, S.; Pennarun, E.; Kushniarevich, A.; Raveane, A.; Semino, O.; Chiaroni, J.; Pereira, L.; Metspalu, M.; Montinaro, F.

10.1101/722165 — genomics — Posted on 2019-08-01

3251 Translocational unfolding in clostridial binary iota toxin complex

Yamada, T.; Yoshida, T.; Kawamoto, A.; Mitsuka, K.; Iwasaki, K.; Tsuge, H.

10.1101/721969 — biophysics — Posted on 2019-08-01

3252 Assembly methods for nanopore-based metagenomic sequencing: a comparative study

Latorre-Perez, A.; Villalba-Bermell, P.; Pascual, J.; Porcar, M.; Vilanova, C.

10.1101/722405 — bioinformatics — Posted on 2019-08-01

3253 Systematic assessment of blood-borne microRNAs highlights molecular profiles of endurance sport and carbohydrate uptake

Kern, F.; Ludwig, N.; Backes, C.; Maldener, E.; Fehlmann, T.; Suleymanov, A.; Meese, E.; Hecksteden, A.; Keller, A.; Meyer, T.

10.1101/721928 — systems biology — Posted on 2019-08-01

3254 The Effects of Genotype x Phenotype Interactions on Silver Nanoparticle Toxicity in Organotypic Cultures of Murine Tracheal Epithelial Cells

Nicholas, T. P.; Haick, A. K.; Workman, T. W.; Griffith, W. C.; Nolin, J. D.; Kavanagh, T. J.; Faustman, E. M.; Altemeier, W. A.

10.1101/722009 — pharmacology and toxicology — Posted on 2019-08-01

3255 Grazer behavior can regulate large-scale patterns of community states

Karatayev, V. A.; Baskett, M. L.; Kushner, D. J.; Shears, N. T.; Caselle, J. E.; Boettiger, C.

10.1101/722215 — ecology — Posted on 2019-08-01

3256 Ureteric Bud Cells Programmed from Embryonic Stem Cells Obtain Competence for Secondary Induction in the Kidney

Tan, Z. T.; Rak-Raszewska, A.; Skovorodkin, I.; Vainio, S.

10.1101/722157 — developmental biology — Posted on 2019-08-01

3257 Autophagy controls lipid droplet formation by fine-tuning NCoR1 levels

Komatsu, M.; Sou, Y.-S.; Koike, M.; Mizushima, N.; Waguri, S.; Terai, S.; Kuma, A.; Saito, T.; Takahashi, S.-s.; Yabe, T.

10.1101/722686 — cell biology — Posted on 2019-08-01

3258 Statistical inference for the evolutionary history of cancer genomes

Đinh, K. N.; Jaksik, R.; Kimmel, M.; Lambert, A.; Tavare, S.

10.1101/722033 — cancer biology — Posted on 2019-08-01

3259 Discovery and validation of candidate smoltification gene expression biomarkers across multiple species and ecotypes of Pacific salmonids

Houde, A. L. S.; Günther, O. P.; Strohm, J.; Ming, T. J.; Li, S.; Kaukinen, K. H.; Patterson, D. A.; Farrell, A. P.; Hinch, S. G.; Miller, K. M.

10.1101/474692 — genomics — Posted on 2019-08-01

3260 Mechanically activated Piezo channels control outflow tract valve development through Yap1 and Klf2-Notch signaling axis

Duchemin, A. L.; Vignes, H.; Vermot, J.

10.1101/529016 — developmental biology — Posted on 2019-08-01

3261 Predictive coding account of action perception: Evidence from effective connectivity in the Action Observation Network

Urgen, B. A.; Saygin, A. P.

10.1101/722298 — neuroscience — Posted on 2019-08-01

3262 Individuation of parts of a single object and multiple distinct objects relies on a common neural mechanism in inferior intraparietal sulcus

Wurm, M.; Porter, K. B.; Caramazza, A.

10.1101/722256 — neuroscience — Posted on 2019-08-01

3263 Priority effects, consumer pressure, and soil resources independently alter plant diversity and resource strategies during a multi-year successional field experiment

Wilfahrt, P. A.; Halliday, F. W.; Heckman, R. W.

10.1101/722264 — ecology — Posted on 2019-08-01

3264 Occurrence of ordered and disordered structural elements in postsynaptic proteins supports optimization for interaction diversity

Kiss-Toth, A.; Dobson, L.; Peterfia, B.; Angyan, A. F.; Ligeti, B.; Lukacs, G.; Gaspari, Z.

10.1101/448100 — bioinformatics — Posted on 2019-08-01

3265 Tailoring 3D cell culture templates with common hydrogels.

Pasturel, A.; Strale, P.-O.; Studer, V.

10.1101/370882 — bioengineering — Posted on 2019-08-01

3266 Evolution of plasticity in production and transgenerational inheritance of small RNAs under dynamic environmental conditions

Silva, W. T. A. F.; Otto, S. P.; Immler, S.

10.1101/722363 — evolutionary biology — Posted on 2019-08-01

3267 Predicting coral adaptation to global warming in the Indo-West-Pacific

Matz, M. V.; Treml, E.; Haller, B.

10.1101/722314 — evolutionary biology — Posted on 2019-08-01

3268 CRISPR/Cas9-mediated integration of large transgene into pig potential safe harbor

Li, G.; Zhang, X.; Wang, H.; Mo, J.; Zhong, C.; Shi, J.; Zhou, R.; Li, Z.; Yang, H.; Fang, W. Z.; Wu, L. D.

10.1101/722348 — bioengineering — Posted on 2019-08-01

3269 Dopamine modulates the integrity of the perisynaptic extracellular matrix at excitatory synapses

Mitloehner, J.; Kaushik, R.; Niekisch, H.; Blondiaux, A.; Gee, C. E.; Happel, M. F. K.; Gundelfinger, E.; Dityatev, A.; Frischknecht, R.; Seidenbecher, C.

10.1101/722454 — neuroscience — Posted on 2019-08-01

3270 Functional properties of habenular neurons are determined by developmental stage and sequential neurogenesis

Fore, S.; Cosacak, M. I.; Diaz Verdugo, C.; Kizil, C.; Yaksi, E.

10.1101/722462 — neuroscience — Posted on 2019-08-01

3271 The statistical signature of confidence is not necessarily a folded X-pattern

Rausch, M.; Zehetleitner, M.

10.1101/426635 — neuroscience — Posted on 2019-08-01

3272 Acoustic contamination of electrophysiological brain signals during speech production and sound perception

Roussel, P.; Bocquelet, F.; Palma, M.; Kahane, P.; Chabardes, S.; Yvert, B.

10.1101/722207 — neuroscience — Posted on 2019-08-01

3273 The tropical coral Pocillopora acuta has a mosaic DNA methylome, an unusual chromatin structure and shows histone H3 clipping

Roquis, D.; Picart Picolo, A.; Berner, K.; Romans, P.; Masanet, P.; Cosseau, C.; Mitta, G.; Grunau, C.; Vidal-Dupiol, J.

10.1101/722322 — molecular biology — Posted on 2019-08-01

3274 Three-dimensional observations of an aperiodic oscillatory gliding motility behaviour in Myxococcus xanthus using confocal interference reflection microscopy

Rooney, L. M.; Kölln, L. S.; Scrimgeour, R.; Amos, W. B.; Hoskisson, P. A.; McConnell, G.

10.1101/722231 — microbiology — Posted on 2019-08-01

3275 Fungal hyphae colonization by Bacillus subtilis relies on biofilm matrix components

Kjeldgaard, B.; Listian, S. A.; Ramaswamhi, V.; Richter, A.; Kiesewalter, H. T.; Kovacs, A. T.

10.1101/722272 — microbiology — Posted on 2019-08-01

3276 Caspase-dependent activation of Hedgehog-signalling sustains proliferation and differentiation of ovarian somatic stem cells.

Galasso, A.; Iakovleva, D.; Baena-Lopez, L. A.

10.1101/722330 — developmental biology — Posted on 2019-08-01

3277 Pharmaco-genetic screen to uncover actin regulators targeted by prostaglandins during Drosophila oogenesis

Spracklen, A. J.; Lamb, M. C.; Groen, C. M.; Tootle, T. L.

10.1101/722355 — cell biology — Posted on 2019-08-01

3278 Oxidative stress in retinal pigment epithelial cells increased endogenous complement-dependent inflammatory and angiogenic responses - independent from exogenous complement sources

Trakkides, T. O.; Schaefer, N.; Reichenthaler, M.; Kuehn, K.; Enzmann, V.; Pauly, D.

10.1101/722470 — cell biology — Posted on 2019-08-01

3279 Mother-to-embryo vitellogenin transport in a viviparous teleost Xenotoca eiseni

Iida, A.; Arai, H.; Someya, Y.; Inokuchi, M.; Onuma, T. A.; Yokoi, H.; Suzuki, T.; Sano, K.

10.1101/708529 — physiology — Posted on 2019-08-01

3280 Parallel Tempering with Lasso for Model Reduction in Systems Biology

Gupta, S.; Lee, R. E. C.; Faeder, J. R.

10.1101/720631 — systems biology — Posted on 2019-08-01

3281 Regenerative neurogenesis is induced from glia by Ia-2 driven neuron glia communication

Harrison, N.; Connolly, E.; Gascon Gubieda, A.; Yang, Z.; Altenhein, B.; Losada Perez, M.; Moreira, M.; Hidalgo, A.

10.1101/721498 — neuroscience — Posted on 2019-08-01

3282 Heterogeneity in human hippocampal CaMKII transcripts reveals an allosteric role for the hub domain in activity regulation

Sloutsky, R.; Dziedzic, N.; Dunn, M. J.; Bates, R.; Torres-Ocampo, A. P.; Page, B.; Weeks, J. G.; Stratton, M. M.

10.1101/721589 — biochemistry — Posted on 2019-08-01

3283 A neural network for information seeking

White, J. K.; Bromberg-Martin, E. S.; Heilbronner, S. R.; Zhang, K.; Pai, J.; Haber, S. N.; Monosov, I. E.

10.1101/720433 — neuroscience — Posted on 2019-08-01

3284 Seasonal Variability and Shared Molecular Signatures of Inactivated Influenza Vaccination in Young and Older Adults

Avey, S.; Mohanty, S.; Chawla, D. G.; Meng, H.; Bandaranayake, T.; Ueda, I.; Zapata, H. J.; Park, K.; Blevins, T. P.; Tsang, S.; Belshe, R. B.; Kaech, S. M.; Shaw, A. C.; Kleinstein, S.

10.1101/719203 — immunology — Posted on 2019-08-01

3285 Haplotype-Resolved Cattle Genomes Provide Insights Into Structural Variation and Adaptation

10.1101/720797 — genomics — Posted on 2019-08-01

3286 AutoPVS1: An automatic classification tool for PVS1 interpretation of null variants

Xiang, J.; Peng, J.; Peng, Z.

10.1101/720839 — genetics — Posted on 2019-08-01

3287 A flexible pipeline combining bioinformatic correction tools for prokaryotic and eukaryotic metabarcoding

Brandt, M. I.; Trouche, B.; Quintric, L.; Wincker, P.; Poulain, J.; ARNAUD-HAOND, S.

10.1101/717355 — bioinformatics — Posted on 2019-08-01

3288 Neuroanatomical Risk Factors for Post Traumatic Stress Disorder (PTSD) in Recent Trauma Survivors

Ben-Zion, Z.; Artzi, M.; Niry, D.; Keynan, J. N.; Admon, R.; Sharon, H.; Halpern, P.; Liberzon, I.; Shalev, A.; Hendler, T.

10.1101/721134 — neuroscience — Posted on 2019-08-01

3289 LRRK2 G2019S kinase activity triggers neurotoxic NSF aggregation

Pischedda, F.; Cirnaru, M. D.; Ponzoni, L.; Biosa, A.; Carrion, M. P.; Morari, M.; Pan, L.; Greggio, E.; Bandopadhyay, R.; Sala, M.; Piccoli, G.

10.1101/721266 — neuroscience — Posted on 2019-08-01

3290 Structural variation of the malaria-associated human glycophorin A-B-E region

10.1101/722371 — genetics — Posted on 2019-08-01

3291 Asymptotic Behavior of the Direction-Averaged Diffusion-Weighted MRI Signal using Different B-Tensor Encoding Schemes

Afzali, M.; Aja-Fernandez, S.; Jones, D. K.

10.1101/722421 — bioengineering — Posted on 2019-08-01

3292 Lateral occipitotemporal cortex encodes perceptual components of social actions rather than abstract representations of sociality

Wurm, M.; Caramazza, A.

10.1101/722249 — neuroscience — Posted on 2019-08-01

3293 Short and long TNF-alpha exposure recapitulates canonical astrogliosis events in human induced pluripotent stem cells-derived astrocytes

Trindade, P.; Loiola, E. C.; Gasparotto, J.; Ribeiro, C. T.; Leal Cardozo, P.; Devalle, S.; Salerno, J. A.; Ornelas, I. M.; Ledur, P. F.; Ribeiro, F. M.; Ventura, A. L. M.; Moreira, J. C. F.; Gelain, D. P.; Porciuncula, L. O.; Rehen, S. K.

10.1101/722017 — neuroscience — Posted on 2019-08-01

3294 Internalizing cooperative norms in group-structured populations

Akcay, E.; Van Cleve, J.

10.1101/722439 — evolutionary biology — Posted on 2019-08-01

3295 A metabolic reconstruction of Lactobacillus reuteri JCM 1112 and analysis of its potential as a cell factory

Kristjansdottir, T.; Bosma, E. F.; Santos, F.; Özdemir, E.; Herrgard, M. J.; Franca, L.; Ferreira, B. S.; Nielsen, A. T.; Guđmundsson, S.

10.1101/708875 — systems biology — Posted on 2019-08-01

3296 Three-fluorophore FRET-FLIM enables the study of trimeric protein interactions and complex formation with nanoscale resolution in living plant cells

Gloeckner, N.; zur Oven-Krockhaus, S.; Wackenhut, F.; Burmeister, M.; Wanke, F.; Holzwart, E.; Meixner, A. J.; Wolf, S.; Harter, K.

10.1101/722124 — plant biology — Posted on 2019-08-01

3297 Co-translational folding allows misfolding-prone proteins to circumvent deep kinetic traps

Bitran, A.; Jacobs, W. M.; Zhai, X.; Shakhnovich, E.

10.1101/721613 — biophysics — Posted on 2019-08-01

3298 A carbonic anhydrase pseudogene sensitizes select Brucella lineages to low CO2 partial pressure

Varesio, L. M.; Willet, J. W.; Fiebig, A.; Crosson, S.

10.1101/721597 — microbiology — Posted on 2019-08-01

3299 Genetic and functional evidence relates a missense variant in B4GALT1 to lower LDL-C and fibrinogen

Montasser, M. E.; Van Hout, C. V.; McFarland, R.; Rosenberg, A.; Callaway, M.; Shen, B.; Li, N.; Daly, T. J.; Howard, A. D.; Lin, w.; Mao, Y.; Ye, B.; Gatta, G. D.; Tzoneva, G.; Perry, J.; Ryan, K. A.; Miloscio, L.; Economides, A. N.; Regeneron Genetics Center, ; NHLBI TOPMed Program, ; Sztalryd-Woodle, C.; Mitchell, B. D.; Healy, M.; Streeten, E.; Zaghloul, N. A.; Taylor, S. I.; O'Connell, J. R.; Shuldiner, A. R.

10.1101/721704 — genetics — Posted on 2019-08-01

3300 Molecular Basis of the Activation and Dissociation of Dimeric PYL2 Receptor in Abscisic Acid Signaling

Zhao, C.; Shukla, D.

10.1101/721761 — plant biology — Posted on 2019-08-01

3301 Staphylococcus pasteuri isolates (Spvs) from human atherosclerotic plaques mediate virulence, intracellular resistance and transendothelial invasion of macrophages: A mechanistic paradigm for microbial pathogenicity in atherosclerosis

haque, N. S.; Modi, J.; Haque, N.; Laskpwski, I.; MAteo, R.; Babu, S.; Barasch, S.; Fallon, J. T.; Amar, S.

10.1101/721571 — pathology — Posted on 2019-08-01

3302 Single cell transcriptome atlas of immune cells in human small intestine and in celiac disease

Stunnenberg, H.; Atlasy, N.; Bujko, A.; Brazda, P. B.; Janssen-Megens, E.; Bakkenvold, E. S.; Jahnsen, J.; Jahsen, F.

10.1101/721258 — immunology — Posted on 2019-08-01

3303 Comprehensive scanning mutagenesis of human retrotransposon LINE-1 identifies motifs essential for function

Adney, E. M.; Ochmann, M. T.; Sil, S.; Truong, D. M.; Mita, P.; Wang, X.; Kahler, D. J.; Fenyo, D.; Holt, L. J.; Boeke, J. D.

10.1101/721357 — genetics — Posted on 2019-08-01

3304 scribble abrogation induces tumor growth through JNK-Wnt pathways depending on cellular-microenvironment in Drosophila wing imaginal tissue

Yadav, A. K.; Fatima, R.; Srikrishna, S.

10.1101/721407 — cancer biology — Posted on 2019-08-01

3305 Variants of intrinsic disorder: structural characterization

Forcelloni, S.; Deiana, A.; Giansanti, A.

10.1101/721308 — bioinformatics — Posted on 2019-08-01

3306 MOG-reactive B cells exacerbate the severity of CD4+ T cell-driven CNS autoimmunity

Doss, P. M. I. A.; Yeola, A. P.; Mailhot, B.; Baillargeon, J.; Grenier, P.; Lacroix, S.; Bertrand, N.; Rangachari, M.

10.1101/721696 — immunology — Posted on 2019-08-01

3307 Small circRNAs with self-cleaving ribozymes are frequently expressed in metazoan transcriptomes

Cervera, A.; De la Pena, M.

10.1101/721605 — genomics — Posted on 2019-08-01

3308 Genetic analysis of Aegilops tauschii-derived seedling resistance to leaf rust in synthetic hexaploid wheat

Mohler, V.; Schmolke, M.; Zeller, F. J.; Hsam, S. L. K.

10.1101/721415 — genetics — Posted on 2019-08-01

3309 Disease as an evolutionary weapon

Eilersen, A.; Sneppen, K.

10.1101/721506 — ecology — Posted on 2019-08-01

3310 Floral organs act as environmental filters and interact with pollinators to structure the yellow monkeyflower (Mimulus guttatus) floral microbiome.

Rebolleda-Gomez, M.; Ashman, T.-L.

10.1101/721647 — ecology — Posted on 2019-08-01

3311 Adaptive thermogenesis in mice requires adipocyte light-sensing via Opsin 3

Nayak, G.; Vemaraju, S.; Zhang, K. X.; Odaka, Y.; Buhr, E. D.; Holt-Jones, A.; Smith, A. N.; Upton, B. A.; Zhan, J. J.; Diaz, N.; Murakami, K.; D'Souza, S.; Nguyen, M.-T.; Gordon, S. A.; Wu, G.; Schmidt, R.; Mei, X.; Petts, N. T.; Batie, M.; Rao, S.; Nakamura, T.; Sweeney, A. M.; Hogenesch, J. B.; Van Gelder, R. N.; Sanchez Gurmaches, J.; Lang, R. A.

10.1101/721381 — physiology — Posted on 2019-08-01

3312 VIP-producing enteric neurons interact with innate lymphoid cells to regulate feeding-dependent intestinal epithelial barrier functions

Talbot, J.; Hahn, P.; Kroehling, L.; Nguyen, H.; Li, D.; Littman, D. R.

10.1101/721464 — immunology — Posted on 2019-08-01

3313 mDia2 formin selectively interacts with catenins and not E-cadherin to regulate Adherens Junction formation

Zhang, Y.; Pettee, K. M.; Becker, K. N.; Eisenmann, K. M.

10.1101/721530 — cell biology — Posted on 2019-08-01

3314 jULIEs: extracellular probes for recordings and stimulation in the structurally and functionally intact mouse brain

Racz, R. R.; Kollo, M.; Racz, G.; Bulz, C.; Ackels, T.; Warner, T.; Wray, W. A.; Kiskin, N.; Chen, C.; Ye, Z.; de Hoz, L.; Rancz, E. A.; Schaefer, A. T.

10.1101/721548 — neuroscience — Posted on 2019-08-01

3315 Human endogenous retrovirus HERV-K(HML-2) RNA causes neurodegeneration through Toll-like receptors

Dembny, P.; Newman, A. G.; Singh, M.; Hinz, M.; Szczepek, M.; Krüger, C.; Adalbert, R.; al-Dzaye, O.; Trimbuch, T.; Wallach, T.; Kleinau, G.; Derkow, K.; Richard, B. C.; Schipke, C.; Scheidereit, C.; Golenbock, D.; Peters, O.; Coleman, M.; Heppner, F. L.; Scheerer, P.; Tarabykin, V.; Ruprecht, K.; Izsvak, Z.; Mayer, J.; Lehnardt, S.

10.1101/721241 — neuroscience — Posted on 2019-08-01

3316 Post-acute administration of the GABAA α5 antagonist S44819 promotes recovery of peripheral limb fine motor skills after permanent distal middle cerebral artery occlusion in rats

Pace, M.; Falappa, M.; Machado, P.; Facchin, L.; Hermann, D. M.; Bassetti, C.

10.1101/721282 — neuroscience — Posted on 2019-08-01

3317 Cell-Specific Regulation of Intestinal Immunity in Drosophila.

Shin, M.; Jones, L. O.; Panteluk, A.; Foley, E.

10.1101/721662 — immunology — Posted on 2019-08-01

3318 PDL1 AND ICOSL DISCRIMINATE HUMAN SECRETORY AND HELPER DENDRITIC CELLS

Hoffmann, C.; Noel, F.; Grandclaudon, M.; Michea, P.; Surun, A.; Faucheux, L.; Sirven, P.; Rochefort, J.; Lantz, O.; Klijanienko, J.; Lecerf, C.; Kamal, M.; Le Tourneau, C.; Guillot-Delost, M.; Soumelis, V.

10.1101/721563 — immunology — Posted on 2019-08-01

3319 Transcriptome association studies of neuropsychiatric traits in African Americans implicate PRMT7 in schizophrenia

Fiorica, P. N.; Wheeler, H. E.

10.1101/721449 — genomics — Posted on 2019-08-01

3320 Host-specific subtelomere: Genomic architecture of pathogen emergence in asexual filamentous fungi

Huang, X.

10.1101/721753 — genomics — Posted on 2019-08-01

3321 Distance to trait optimum is a crucial factor determining the genomic signature of polygenic adaptation

Christodoulaki, E.; Barghi, N.; Schloetterer, C.

10.1101/721340 — evolutionary biology — Posted on 2019-08-01

3322 Temporal, environmental, and biological drivers of the mucosal microbiome in a wild marine fish, Scomber japonicus

Minich, J.; Petrus, S.; Michael, J. D.; Michael, T. P.; Knight, R.; Allen, E.

10.1101/721555 — ecology — Posted on 2019-08-01

3323 Bivalent and Broad Chromatin Domains Regulate Pro-metastatic Drivers in Melanoma

Terranova, C.; Tang, M.; Maitituoheti, M.; Raman, A.; Schulz, J.; Amin, S.; Orouji, E.; Tomczak, K.; Sarkar, S.; Oba, J.; Creasy, C.; Wu, C.-J.; Zhao, D.; Chen, K.; Haydu, L. E.; Wang, W.-L.; Lazar, A. J.; Woodman, S. E.; Bernatchez, C.; Rai, K.

10.1101/721480 — cancer biology — Posted on 2019-08-01

3324 The association between mineralised tissue formation and the mechanical local in vivo environment: Time-lapsed quantification of a mouse defect healing model

Tourolle ne Betts, D.; Wehrle, E.; Paul, G. R.; Kuhn, G. A.; Christen, P.; Hofmann, S.; Muller, R.

10.1101/721365 — bioengineering — Posted on 2019-08-01

3325 Mutations of R882 in DNMT3A change flanking sequence preferences and cellular methylation patterns in AML

Emperle, M.; Adam, S.; Kunert, S.; Dukatz, M.; Baude, A.; Plass, C.; Rathert, P.; Bashtrykov, P.; Jeltsch, A.

10.1101/721472 — biochemistry — Posted on 2019-08-01

3326 The Molecular Mass and Isoelectric Point of Plant Proteomes

Mohanta, T.; Khan, A. L.; Hashem, A.; Abd_Allah, E. F.; Al-Harrasi, A.

10.1101/546077 — plant biology — Posted on 2019-08-01

Archive, 2019-08