bioRxiv directory

Lauren L. Emberson;Benjamin D. Zinszer;Rajeev D. S. Raizada;Richard N. Aslin;

10.1101/061234 — Neuroscience — Posted on 2016-06-30

3 The variable ELF3 polyglutamine tract mediates complex epistatic interactions in Arabidopsis thaliana.

Maximilian Oliver Press;Christine Queitsch;

10.1101/061564 — Genetics — Posted on 2016-06-30

4 Democratizing DNA Fingerprinting

Sophie Zaaijer;Assaf Gordon;Robert Piccone;Daniel Speyer;Yaniv Erlich;

10.1101/061556 — Genomics — Posted on 2016-06-30

5 Genetic Allee effects and their interaction with ecological Allee effects

Meike Wittmann;Hanna Stuis;Dirk Metzler;

10.1101/061549 — Ecology — Posted on 2016-06-30

6 IL-1α induces cathepsin K in oral cancer cells − the invasion is unaffected

Carolina Cavalcante Bitu;Ahmed Al-Samadi;Tuukka Alanäärä;Hennaliina Karhumaa;Pirjo Viitasaari;Ivarne L.S. Tersariol;Fábio Dupart Nascimento;Tuula Salo;

10.1101/061465 — Cancer Biology — Posted on 2016-06-30

7 Individual differences in learning behaviours in humans: Asocial exploration tendency does not predict reliance on social learning

Wataru Toyokawa;Yoshimatsu Saito;Tatsuya Kameda;

10.1101/061473 — Animal Behavior and Cognition — Posted on 2016-06-30

8 Suite2p: beyond 10,000 neurons with standard two-photon microscopy

Marius Pachitariu;Carsen Stringer;Sylvia Schröder;Mario Dipoppa;L. Federico Rossi;Matteo Carandini;Kenneth D Harris;

10.1101/061507 — Neuroscience — Posted on 2016-06-30

9 Kilosort: realtime spike-sorting for extracellular electrophysiology with hundreds of channels

Marius Pachitariu;Nicholas Steinmetz;Shabnam Kadir;Matteo Carandini;Kenneth D Harris;

10.1101/061481 — Neuroscience — Posted on 2016-06-30

10 Extreme distribution of deleterious variation in a historically small and isolated population-insights from the Greenlandic Inuit

Casper-Emil T Pedersen;Kirk E Lohmueller;Niels Grarup;Peter Bjerregaard;Torben Hansen;Hans R Siegismund;Ida Moltke;Anders Albrechtsen;

10.1101/061440 — Genetics — Posted on 2016-06-30

11 Detection of statistically significant network changes in complex biological networks

Raghvendra Mall;Luigi Cerulo;Halima Bensmail;Antonio Iavarone;Michele Ceccarelli;

10.1101/061515 — Bioinformatics — Posted on 2016-06-30

12 Detection of statistically significant network changes in complex biological networks

Raghvendra Mall;Luigi Cerulo;Halima Bensmail;Antonio Iavarone;Michele Ceccarelli;

10.1101/061515 — Bioinformatics — Posted on 2016-06-30

13 Modeling and experimental determination of infection bottleneck and within-host dynamics of a soil-borne bacterial plant pathogen.

Gaofei Jiang;Remi Peyraud;Philippe Remigi;Alice Guidot;Wei Ding;Stephane Genin;Nemo Peeters;

10.1101/061408 — Plant Biology — Posted on 2016-06-29

14 Post-mortem molecular profiling of three psychiatric disorders reveals widespread dysregulation of cell-type associated transcripts and refined disease-related transcription changes

Kevin Bowling;Ryne C. Ramaker;Brittany N. Lasseigne;Megan Hagenauer;Andrew Hardigan;Nick Davis;Jason Gertz;Preston Cartagena;David Walsh;Marquis Vawter;Alan Schatzberg;Jack Barchas;Stan Watson;Blynn Bunney;Huda Akil;William Bunney;Jun Li;Sara Cooper;Richard M. Myers;

10.1101/061416 — Genomics — Posted on 2016-06-29

15 iCAVE: an open source tool for immersive 3D visualization of complex biomolecular interaction networks

Vaja Liluashvili;Selim Kalayci;Eugene Flouder;Manda Wilson;Aaron Gabow;Zeynep H. Gümüş;

10.1101/061374 — Bioinformatics — Posted on 2016-06-29

16 Homozygous loss of autism-risk gene CNTNAP2 results in reduced local and long-range prefrontal functional connectivity

Adam Liska;Ryszard Gomolka;Mara Sabbioni;Alberto Galbusera;Stefano Panzeri;Maria Luisa Scattoni;Alessandro Gozzi;

10.1101/060335 — Neuroscience — Posted on 2016-06-29

17 Direct coevolutionary couplings reflect biophysical residue interactions in proteins

Alice Coucke;Guido Uguzzoni;Francesco Oteri;Simona Cocco;Remi Monasson;Martin Weigt;

10.1101/061390 — Biophysics — Posted on 2016-06-29

18 Pattern formation and variable species densities are induced by domain growth.

Robert Ross;Christian Yates;Ruth Baker;

10.1101/061341 — Systems Biology — Posted on 2016-06-29

19 Aberrant prefrontal beta oscillations predict episodic memory encoding deficits in schizophrenia

Federica Meconi;Sarah Anderl-Straub;Heidelore Raum;Michael Landgrebe;Berthold Langguth;Karl-Heinz Baeuml;Simon Hanslmayr;

10.1101/061291 — Neuroscience — Posted on 2016-06-29

20 How to evaluate phase differences between trial groups in ongoing electrophysiological signals

Rufin VanRullen;

10.1101/061283 — Neuroscience — Posted on 2016-06-29

21 The rhythms of predictive coding: pre-stimulus phase modulates the influence of shape perception on luminance judgments

Biao Han;Rufin VanRullen;

10.1101/061309 — Neuroscience — Posted on 2016-06-29

22 Causal Relationships Underlying Episodic Memory Network Dynamics in Older Adults

Simon W Davis;Bruce Luber;David LK Murphy;Sarah H Lisanby;Roberto Cabeza;

10.1101/061267 — Neuroscience — Posted on 2016-06-29

23 When is a bacterial "virulence factor" really virulent?

Elisa T Granato;Freya Harrison;Rolf Kümmerli;Adin Ross-Gillespie;

10.1101/061317 — Microbiology — Posted on 2016-06-29

24 Convergent evidence for the molecular basis of musical traits

Jaana Oikkonen;Päivi Onkamo;Irma Järvelä;Chakravarthi Kanduri;

10.1101/061358 — Genetics — Posted on 2016-06-29

25 Imputation-based fine-mapping suggests that most QTL in an outbred chicken Advanced Intercross Line are due to multiple, linked loci

Monika Brandt;Muhammad Ahsan;Christa F Honaker;Paul B Siegel;Orjan Carlborg;

10.1101/061333 — Genetics — Posted on 2016-06-29

26 Active delivery to the brain by chemotaxis

Adrian Joseph;Claudia Contini;Denis Cecchin;Sophie Nyberg;Lorena Ruiz-Perez;Jens Gaitzsch;Gavin Fullstone;Juzaili Azizi;Jane Preston;Giorgio Volpe;Giuseppe Battaglia;

10.1101/061325 — Bioengineering — Posted on 2016-06-29

27 NR1H3 p.Arg415Gln is not associated to multiple sclerosis risk

International MS Genetics Consortium;Chris Cotsapas;

10.1101/061366 — Genetics — Posted on 2016-06-29

28 NR1H3 p.Arg415Gln is not associated to multiple sclerosis risk

International MS Genetics Consortium;Chris Cotsapas;

10.1101/061366 — Genetics — Posted on 2016-06-29

29 Evaluating the diagnostic utility of applying a machine learning algorithm to diffusion tensor MRI measures in individuals with major depressive disorder

David M Schnyer;Peter G Clasen;Christopher Gonzalez;Christopher G Beevers;

10.1101/061119 — Neuroscience — Posted on 2016-06-29

30 Preparatory encoding of the fine scale of human spatial attention

Bradley Voytek;Jason Samaha;Camarin E Rolle;Zachery Greenberg;Navdeep Gill;Shai Porat;Tahim Kader;Sabahat Rahman;Rick Malzyner;Adam Gazzaley;

10.1101/061259 — Neuroscience — Posted on 2016-06-29

31 Characterization of Methicillin-resistant Staphylococcus aureus Isolates from Fitness Centers in Memphis Metropolitan Area, USA

Nabanita Mukherjee;Irshad M. Sulaiman;Pratik Banerjee;

10.1101/061044 — Microbiology — Posted on 2016-06-29

32 The mutation rate in human evolution and demographic inference

Aylwyn Scally;

10.1101/061226 — Evolutionary Biology — Posted on 2016-06-29

33 Compensatory responses by managers, commercial and recreational harvesters to variation in stock abundance of Lake Erie walleye (Sander vitreus vitreus)

Katrine Turgeon;Kevin B. Reid;John M. Fryxell;Thomas D. Nudds;

10.1101/061143 — Ecology — Posted on 2016-06-29

34 Collective strategy for obstacle navigation during cooperative transport by ants

Helen McCreery;Zachary Dix;Michael Breed;Radhika Nagpal;

10.1101/061036 — Animal Behavior and Cognition — Posted on 2016-06-29

35 A signal detection theoretic argument against claims of unmeritocratic faculty hiring

Michael Thomas Miuccio;Ka-yuet Liu;Hakwan Lau;Megan A. K. Peters;

10.1101/061200 — Scientific Communication and Education — Posted on 2016-06-29

36 Elucidating the genetic basis of an oligogenic birth defect using whole genome sequence data in a non-model organism, Bubalus bubalis

Lynsey K. Whitacre;Jesse L. Hoff;Robert D. Schnabel;Sara Albarella;Francesca Ciotola;Vincenzo Peretti;Francesco Strozzi;Chiara Ferrandi;Luigi Rammuno;Tad S. Sonstegard;John L. Williams;Jerry F. Taylor;Jared E Decker;

10.1101/060996 — Genomics — Posted on 2016-06-29

37 FF12MC: A revised AMBER forcefield and new protein simulation protocol

Yuan-Ping Pang;

10.1101/061184 — Biophysics — Posted on 2016-06-29

38 Simulations reveal increased fluctuations in estrogen receptor-alpha conformation upon antagonist binding

Ho Leung Ng;

10.1101/061069 — Bioinformatics — Posted on 2016-06-29

39 Locating the ligand binding sites for the G-protein coupled estrogen receptor (GPER) using combined information from docking and sequence conservation

Ashley R. Vidad;Stephen Macaspac;Ho Leung Ng;

10.1101/061051 — Bioinformatics — Posted on 2016-06-29

40 Characterization of kinase gene expression and splicing profile in prostate cancer with RNA-Seq data

Huijuan Feng;Tingting Li;Xuegong Zhang;

10.1101/061085 — Bioinformatics — Posted on 2016-06-29

41 Enhancer sharing promotes neighborhoods of transcriptional regulation across eukaryotes

Porfirio Quintero-Cadena;Paul Sternberg;

10.1101/061218 — Genomics — Posted on 2016-06-28

42 CLARITY-compatible lipophilic dyes for electrode marking and neuronal tracing

Kristian H. R. Jensen;Rune W. Berg;

10.1101/061135 — Neuroscience — Posted on 2016-06-28

43 Psip1/p52 regulates distal Hoxa genes through activation of lncRNA Hottip

Madapura M Pradeepa;Gillian AG Taylor;Graeme R Grimes;Andrew Wood;Wendy Bickmore;

10.1101/061192 — Genetics — Posted on 2016-06-28

44 A novel approach to derive human midbrain-specific organoids from neuroepithelial stem cells

Anna Sophia Monzel;Lisa Maria Smits;Kathrin Hemmer;Siham Hachi;Edinson Lucumi Moreno;Thea van Wuellen;Ronan MT Fleming;Silvia Bolognin;Jens Christian Schwamborn;

10.1101/061077 — Cell Biology — Posted on 2016-06-29

45 A novel approach to derive human midbrain-specific organoids from neuroepithelial stem cells

Anna Sophia Monzel;Lisa Maria Smits;Kathrin Hemmer;Siham Hachi;Edinson Lucumi Moreno;Thea van Wuellen;Ronan MT Fleming;Silvia Bolognin;Jens Christian Schwamborn;

10.1101/061077 — Cell Biology — Posted on 2016-06-28

46 The regulatable MAL32 promoter in S. cerevisiae: characteristics and tools to facilitate its use

Matthias Meurer;Veronika Chevyreva;Bram Cerulus;Michael Knop;

10.1101/061127 — Cell Biology — Posted on 2016-06-28

47 A neuropeptide modulates sensory perception in the entomopathogenic nematode Steinernema carpocapsae

Robert Morris;Leonie Wilson;Neil D Warnock;Daniel Carrizo;Deborah Cox;Matthew Sturrock;Kilian McGrath;Aaron G Maule;Johnathan Dalzell;

10.1101/061101 — Animal Behavior and Cognition — Posted on 2016-06-28

48 Plant Chimeras: the good, the bad, and the Bizzaria

Margaret H Frank;Daniel H Chitwood;

10.1101/060715 — Plant Biology — Posted on 2016-06-28

49 Assessment of carbon dioxide, carbon dioxide/ oxygen, isoflurane and pentobarbital killing methods in rats.

Jessie Chisholm;Daniel Pang;

10.1101/061002 — Physiology — Posted on 2016-06-28

50 Kinetochore Microtubules indirectly link Chromosomes and Centrosomes in C. elegans Mitosis

Stefanie Redemann;Johannes Baumgart;Norbert Lindow;Sebastian Fuerthauer;Ehssan Nazockdast;Andrea Kratz;Steffen Prohaska;Jan Brugues;Michael Shelley;Thomas Mueller-Reichert;

10.1101/060855 — Cell Biology — Posted on 2016-06-28

51 Consensus or deadlock? Consequences of simple behavioral rules for coordination in group decisions

Helen McCreery;Nikolaus Correll;Michael Breed;Samuel Flaxman;

10.1101/061010 — Animal Behavior and Cognition — Posted on 2016-06-28

52 A genetically encoded inhibitor of 53BP1 to stimulate homology-based gene editing

Marella Canny;Leo Wan;Amelie Fradet-Turcotte;Alexandre Orthwein;Nathalie Moatti;Yu-Chi Juang;Wei Zhang;Sylvie M Noordermeer;Marcus D Wilson;Andrew Vorobyov;Meagan Munro;Andreas Ernst;Michal Zimmermann;Timothy F Ng;Sachdev S Sidhu;Frank Sicheri;Daniel Durocher;

10.1101/060954 — Molecular Biology — Posted on 2016-06-28

53 A genetically encoded inhibitor of 53BP1 to stimulate homology-based gene editing

10.1101/060954 — Molecular Biology — Posted on 2016-06-28

54 A high density map for navigating the human Polycomb complexome

Simon Hauri;Federico Comoglio;Makiko Seimiya;Moritz Gerstung;Timo Glatter;Klaus Hansen;Ruedi Aebersold;Renato Paro;Matthias Gstaiger;Christian Beisel;

10.1101/059964 — Systems Biology — Posted on 2016-06-28

55 Virtual screening of inhibitors for the Zika virus proteins

Sergey Feranchuk;Uliana Potapova;Sergei Belikov;

10.1101/060798 — Pharmacology and Toxicology — Posted on 2016-06-28

56 Heterogeneity of cognitive decline in dementia: taking into account variable time-zero severity

Steven John Kiddle;Alice Parodi;Caroline Johnston;Chris Wallace;Richard Dobson;

10.1101/060830 — Neuroscience — Posted on 2016-06-28

57 Two-Dimensional Hermite Filters Simplify the Description of High-Order Statistics of Natural Images

Qin Hu;Jonathan Victor;

10.1101/060947 — Neuroscience — Posted on 2016-06-28

58 FastGT: from raw sequence reads to 30 million genotypes in less than an hour

Fanny-Dhelia Pajuste;Lauris Kaplinski;Märt Möls;Tarmo Puurand;Maarja Lepamets;Maido Remm;

10.1101/060822 — Genomics — Posted on 2016-06-28

59 An improved genome assembly uncovers a prolific tandem repeat structure in Atlantic cod

Ole K Tørresen;Bastiaan Star;Sissel Jentoft;William Brynildsen Reinar;Harald Grove;Jason R Miller;Brian P Walenz;James Knight;Jenny M Ekholm;Paul Peluso;Rolf B Edvardsen;Ave Tooming-Klunderud;Morten Skage;Sigbjørn Lien;Kjetill S. Jakobsen;Alexander J Nederbragt;

10.1101/060921 — Genomics — Posted on 2016-06-28

60 Nanog fluctuations in ES cells highlight the problem of measurement in cell biology

Rosanna C G Smith;Patrick S Stumpf;Sonya J Ridden;Aaron Sim;Sarah Filippi;Heather Harrington;Ben D MacArthur;

10.1101/060558 — Cell Biology — Posted on 2016-06-28

61 Comparative distribution of antisense-RNA regulated toxin-antitoxin systems

Dorien S Coray;Nicole Wheeler;Jack A Heinemann;Paul P Gardner;

10.1101/060863 — Bioinformatics — Posted on 2016-06-28

62 Varapp: A reactive web-application for variants filtering

Julien Delafontaine;Alexandre Masselot;Robin Liechti;Dmitry Kuznetsov;Ioannis Xenarios;Sylvain Pradervand;

10.1101/060806 — Bioinformatics — Posted on 2016-06-28

63 fCCAC: functional canonical correlation analysis to evaluate covariance between nucleic acid sequencing datasets

Pedro Madrigal;

10.1101/060780 — Bioinformatics — Posted on 2016-06-28

64 Elucidating Combinatorial Chromatin States by Co-ImmunoPrecipitation (comb-ChIP)

Ronen Sadeh;Roee Launer-Wachs;Hava Wandel;Ayelet Rahat;Nir Friedman;

10.1101/060962 — Genomics — Posted on 2016-06-27

65 The validity of pairwise models in predicting community dynamics

Babak Momeni;Li Xie;Wenying Shou;

10.1101/060988 — Ecology — Posted on 2016-06-27

66 Fitting the Erlang distribution to cancer incidence by age may predict key carcinogenic events

Aleksey V. Belikov;

10.1101/060970 — Cancer Biology — Posted on 2016-06-27

67 Williams Syndrome-Specific Neuroarchitectural Profile and Its Associations with Cognitive Features

Chun Chieh Fan;Timothy T. Brown;Hauke Bartsch;Joshua M. Kuperman;Donald J. Hagler;Andrew Schork;Eric Halgren;Anders Dale;

10.1101/060764 — Neuroscience — Posted on 2016-06-26

68 Norovirus-mediated modification of the translational landscape via virus and host-induced cleavage of translation initiation factors.

Edward Emmott;Frederic Sorgeloos;Sarah L. Caddy;Surender Vashist;Stanislav Sosnovtsev;Richard Lloyd;Kate Heesom;Ian Goodfellow;

10.1101/060772 — Microbiology — Posted on 2016-06-26

69 No evidence for phylostratigraphic bias impacting inferences on patterns of gene emergence and evolution

Tomislav Domazet-Loso;Anne-Ruxanda Carvunis;M. Mar Alba;Matin S Sestak;Robert Bakaric;Rafik Neme;Diethard Tautz;

10.1101/060756 — Genomics — Posted on 2016-06-26

70 A NOVEL METHOD FOR MEASURING TEXTURE USING A FOOD PROCESSOR

Jiro Kanamori;

10.1101/060731 — Biophysics — Posted on 2016-06-26

71 Physical basis of large microtubule aster growth

Keisuke Ishihara;Kirill S Korolev;Timothy J Mitchison;

10.1101/055939 — Biophysics — Posted on 2016-06-26

72 Disrupting dorsolateral prefrontal cortex by rTMS reduces the P300 based marker of deception

Inga Karton;Anni-Bessie Kitt;Talis Bachmann;

10.1101/060723 — Neuroscience — Posted on 2016-06-25

73 Inference of transmission network structure from HIV phylogenetic trees

Federica Giardina;Ethan Obie Romero-Severson;Jan Albert;Tom Britton;Thomas Kenneth Leitner;

10.1101/059865 — Epidemiology — Posted on 2016-06-25

74 Disorder Atlas: a web service for the proteome-based interpretation of intrinsic disorder predictions

Michael Vincent;Santiago Schnell;

10.1101/060699 — Bioinformatics — Posted on 2016-06-25

75 Gene-Culture Coevolution of Prosocial Rituals

Karl Frost;

10.1101/060632 — Evolutionary Biology — Posted on 2016-06-24

76 Coevolutionary Dynamics of Costly Bonding Ritual and Altruism

Karl Frost;

10.1101/060624 — Evolutionary Biology — Posted on 2016-06-24

77 Calming Meditation Increases Altruism, Decreases Parochialism

Karl Frost;

10.1101/060616 — Animal Behavior and Cognition — Posted on 2016-06-24

78 Neurobiology as information physics

Sterling Street;

10.1101/060467 — Neuroscience — Posted on 2016-06-24

79 The Cultural Evolution of Hard-to-fake Rituals

Karl Frost;

10.1101/060640 — Animal Behavior and Cognition — Posted on 2016-06-24

80 The combination of the functionalities of feedback circuits is determinant for the number and size of attractors of molecular networks

Eugenio Azpeitia;Stalin Munoz;Daniel Gonzalez-Tokman;Mariana Esther Martinez-Sanchez;Nathan Weinstein;Aurelien Naldi;Elena ER Alvarez-Buylla;David A Rosenblueth;Luis Mendoza;

10.1101/060608 — Systems Biology — Posted on 2016-06-24

81 Asymmetry of the temporal code for space by hippocampal place cells

Bryan C. Souza;Adriano B. L. Tort;

10.1101/060590 — Neuroscience — Posted on 2016-06-24

82 Gamma-rhythmic Gain Modulation

Jianguang Ni;Thomas Wunderle;Christopher M. Lewis;Robert Desimone;Ilka Diester;Pascal Fries;

10.1101/060582 — Neuroscience — Posted on 2016-06-24

83 Comparative analysis highlights variable genome content of wheat rusts and divergence of the mating loci.

Christina A Cuomo;Guus Bakkeren;Hala Badr Khalil;Vinay Panwar;David Joly;Rob Linning;Sharadha Sakthikumar;Xiao Song;Xian Adiconis;Lin Fan;Jonathan M Goldberg;Joshua Z Levin;Sarah Young;Qiandong Zeng;Yehoshua Anikster;Myron Bruce;Meinan Wang;Chuntao Yin;Brent McCallum;Les J Szabo;Scot Hulbert;Xiaming Chen;John P. Fellers;

10.1101/060665 — Microbiology — Posted on 2016-06-24

84 Hierarchical effects of pro-inflammatory cytokines on the post-influenza susceptibility to pneumococcal coinfection

Stefanie Duvigneau;Niharika Sharma-Chawla;Alessandro Boianelli;Sabine Stegemann-Koniszewski;Van Kinh Nguyen;Dunja Bruder;Esteban A. Hernandez-Vargas;

10.1101/060293 — Immunology — Posted on 2016-06-24

85 Predicting the stability of homologous gene duplications in a plant RNA virus

Anouk Willemsen;Mark Peter Zwart;Pablo Higueras;Josep Sardanyés;Santiago F. Elena;

10.1101/060517 — Evolutionary Biology — Posted on 2016-06-24

86 Qudaich: A smart sequence aligner

Sajia Akhter;Robert A Edwards;

10.1101/060509 — Bioinformatics — Posted on 2016-06-24

87 Bottom-up ecology of the human microbiome: from metagenomes to metabolomes

Daniel R. Garza;Marcel C. Van Verk;Martijn A. Huynen;Bas E. Dutilh;

10.1101/060673 — Bioinformatics — Posted on 2016-06-24

88 16SpeB: Towards defining bacterial species boundaries by intra-species gene sequence identity

Adam Chun-Nin Wong;Angela E Douglas;Patrick Ng;

10.1101/060657 — Bioinformatics — Posted on 2016-06-24

89 Differential stimulation of the retina with glutamate toward a neurotransmitter-based retinal prosthesis

Corey Rountree;Samsoon Inayat;John Troy;Laxman Saggere;

10.1101/060681 — Bioengineering — Posted on 2016-06-24

90 The fitness effects of spontaneous mutations nearly unseen by selection in a bacterium with multiple chromosomes

Marcus M Dillon;Vaughn S Cooper;

10.1101/060483 — Evolutionary Biology — Posted on 2016-06-24

91 The ATP synthase subunit β (ATP5B) is an entry factor for the hepatitis E virus

Zulfazal Ahmed;Prasida Holla;Imran Ahmad;Shahid Jameel;

10.1101/060434 — Cell Biology — Posted on 2016-06-23

92 Ouija: Incorporating prior knowledge in single-cell trajectory learning using Bayesian nonlinear factor analysis

Kieran Campbell;Christopher Yau;

10.1101/060442 — Bioinformatics — Posted on 2016-06-23

93 Translational contributions to tissue-specificity in rhythmic and constitutive gene expression.

Violeta Castelo-Szekely;A. Bulak Arpat;Peggy Janich;David Gatfield;

10.1101/060368 — Genomics — Posted on 2016-06-23

94 The mitotic kinesin-14 KlpA contains a context-dependent directionality switch

Andrew R Popchock;Kuo-Fu Tseng;Pan Wang;P. Andrew Karplus;Xin Xiang;Weihong Qiu;

10.1101/058602 — Biophysics — Posted on 2016-06-23

95 Systematic analysis of transcriptional and post-transcriptional regulation of metabolism in yeast

Emanuel Gonçalves;Zrinka Raguz;Mattia Zampieri;Omar Wagih;David Ochoa;Uwe Sauer;Pedro Beltrao;Julio Saez-Rodriguez;

10.1101/057398 — Systems Biology — Posted on 2016-06-23

96 Evaluating the Evaluation of Cancer Driver Genes

Collin Tokheim;Nickolas Papadopoulis;Kenneth W Kinzler;Bert Vogelstein;Rachel Karchin;

10.1101/060426 — Bioinformatics — Posted on 2016-06-23

97 Dissociation of reinforcement and Hebbian learning induces covert acquisition of value in the basal ganglia

Meropi Topalidou;Daisuke Kase;Thomas Boraud;Nicolas P. Rougier;

10.1101/060236 — Neuroscience — Posted on 2016-06-23

98 Optimization of an anti Staphylococcus antibiotic produced by tropical soil dwelling Streptomyces parvulus

Sonashia Velho-Pereira;Nandkumar M Kamat;

10.1101/060392 — Microbiology — Posted on 2016-06-23

99 Whole Exome Sequencing in Neurogenetic Diagnostic Odysseys: An Argentinian Experience

Marta Cordoba;Sergio Rodriguez-Quiroga;Patricia Vega;Hernan Amartino;Cecilia Vazquez-Dusefante;Nancy Medina;Dolores Gonzalez-Moron;Marcelo Andres Kauffman;

10.1101/060319 — Genomics — Posted on 2016-06-23

100 A discrete event simulation to evaluate the cost effectiveness of germline BRCA1 and BRCA2 testing in UK women with ovarian cancer

Anthony Eccleston;Anthony Bentley;Matthew Dyer;Ann Strydom;Wim Vereecken;Angela George;Nazneen Rahman;

10.1101/060418 — Genetics — Posted on 2016-06-24

101 A discrete event simulation to evaluate the cost effectiveness of germline BRCA1 and BRCA2 testing in UK women with ovarian cancer

Anthony Eccleston;Anthony Bentley;Matthew Dyer;Ann Strydom;Wim Vereecken;Angela George;Nazneen Rahman;

10.1101/060418 — Genetics — Posted on 2016-06-23

102 Breaking Lander-Waterman’s Coverage Bound

Damoun Nashta-ali;Seyed Abolfazl Motahari;Babak Hossein Khalaj;

10.1101/060384 — Bioinformatics — Posted on 2016-06-23

103 Next-generation sequencing identifies novel gene variants and pathways involved in specific language impairment

Xiaowei Sylvia Chen;Rose H Reader;Alexander Hoischen;Joris A Veltman;Nuala H Simpson;SLI Consortium;Clyde Francks;Dianne F Newbury;Simon E Fisher;

10.1101/060301 — Genetics — Posted on 2016-06-23

104 Optimal inventorying and monitoring of taxon, phylogenetic and functional diversity

Pedro Cardoso;Jose C Carvalho;Luis C Crespo;Miquel A Arnedo;

10.1101/060400 — Ecology — Posted on 2016-06-23

105 Genome-wide screen of cell-cycle regulators in normal and tumor cells identifies a differential response to nucleosome depletion

Maria Sokolova;Mikko Turunen;Oliver Mortusewicz;Teemu Kivioja;Patrick Herr;Anna Vaharautio;Mikael Bjorklund;Minna Taipale;Thomas Helleday;Jussi Taipale;

10.1101/060350 — Cell Biology — Posted on 2016-06-23

106 DECONTEXTUALIZING BIG DATA FOR A BETTER PERCEPTION OF MACROECOLOGY

Christian Mulder;Giorgio Mancinelli;

10.1101/059915 — Ecology — Posted on 2016-06-22

107 Numerical and Spatial Patterning of Yeast Meiotic DNA Breaks by Tel1

Neeman Mohibullah;Scott Keeney;

10.1101/059022 — Molecular Biology — Posted on 2016-06-22

108 Finding functional disease-associated non-coding variation using next-generation sequencing

Paolo Devanna;Xiaowei Sylvia Chen;Joses Ho;Dario Gajewski;Alessandro Gialluisi;Clyde Francks;Simon E Fisher;Dianne F Newbury;Sonja C Vernes;

10.1101/060285 — Genetics — Posted on 2016-06-22

109 Temperature-induced transcriptional responses of the deep-biosphere bacterium, Kosmotoga olearia, illuminate its adaptation to growth from 20 ° to 79°

Stephen M. J. Pollo;Abigail A. Adebusuy;Timothy J. Straub;Julia M. Foght;Olga Zhaxybayeva;Camilla L. Nesbo;

10.1101/060053 — Evolutionary Biology — Posted on 2016-06-22

110 aRNApipe: A balanced, efficient and distributed pipeline for processing RNA-seq data in high performance computing environments

Arnald Alonso;Brittany N. Lasseigne;Kelly Williams;Josh Nielsen;Ryne C. Ramaker;Andrew A Hardigan;Bobbi Johnston;Brian S. Roberts;Sara J. Cooper;Sara Marsal;Richard M. Myers;

10.1101/060277 — Bioinformatics — Posted on 2016-06-22

111 A wireless centrifuge force microscope (CFM) enables multiplexed single-molecule experiments in a commercial centrifuge

Tony Hoang;Dhruv S. Patel;Ken Halvorsen;

10.1101/060269 — Biophysics — Posted on 2016-06-22

112 Prioritizing 2nd and 3rd order interactions via support vector ranking using sensitivity indices on time series Wnt measurements - Part B

shriprakash sinha;

10.1101/060228 — Systems Biology — Posted on 2016-06-22

113 Natural DEET substitutes that are strong olfactory repellents of mosquitoes and flies

Sean Michael Boyle;Tom Guda;Christine Krause Pham;Sana Khalid Tharadra;Anupama Dahanukar;Anandasankar Ray;

10.1101/060178 — Neuroscience — Posted on 2016-06-22

114 Suboptimality in perception

Dobromir Rahnev;Rachel Denison;

10.1101/060194 — Neuroscience — Posted on 2016-06-22

115 Using reference-free compressed data structures to analyse sequencing reads from thousands of human genomes

Dirk-Dominic Dolle;Zhicheng Liu;Matthew L Cotten;Jared T Simpson;Zamin Iqbal;Richard Durbin;Shane McCarthy;Thomas Keane;

10.1101/060186 — Genomics — Posted on 2016-06-22

116 Evolutionary genomics of peach and almond domestication

Dianne Velasco;Josh Hough;Mallikarjuna Aradhya;Jeffrey Ross-Ibarra;

10.1101/060160 — Evolutionary Biology — Posted on 2016-06-22

Andrew Gadie;Meredith Shafto;Yue Leng;Cam-CAN;Rogier A. Kievit;

10.1101/060145 — Neuroscience — Posted on 2016-06-22

118 DNA methylation adjusts the specificity of memories depending on the learning context and promotes relearning

Stephanie D Biergans;Charles Claudianos;Judith Reinhard;C. Giovanni Galizia;

10.1101/060152 — Neuroscience — Posted on 2016-06-22

119 High virulence does not necessarily impede viral adaptation to a new host: A case study using a plant RNA virus

Anouk Willemsen;Mark Peter Zwart;Santiago F. Elena;

10.1101/060137 — Evolutionary Biology — Posted on 2016-06-22

120 Dynamic changes in Sox2 spatio-temporal expression direct the second cell fate decision through Fgf4/Fgfr2 signaling in preimplantation mouse embryos

Tapan Kumar Mistri;Wibowo Arindrarto;Wei Ping Ng;Choayang Wang;Hiong Lim Leng;Lili Sun;Ian Chambers;Thorsten Wohland;Paul Robson;

10.1101/052530 — Developmental Biology — Posted on 2016-06-22

121 Disordered clusters of Bak dimers rupture mitochondria during apoptosis

Rachel T Uren;Martin O'Hely;Sweta Iyer;Ray Bartolo;Jason M Brouwer;Amber E Alsop;Grant Dewson;Ruth M Kluck;

10.1101/059899 — Cell Biology — Posted on 2016-06-22

122 Epigenetic divergence is sufficient to trigger heterosis in Arabidopsis thaliana

Kathrin Lauss;Rene Wardenaar;Marieke H.A. van Hulten;Victor Guryev;Joost J.B Keurentjes;Maike Stam;Frank Johannes;

10.1101/059980 — Plant Biology — Posted on 2016-06-21

123 Perceptual integration without conscious access

Johannes Jacobus Fahrenfort;Jonathan van Leeuwen;Chris N.L. Olivers;Hinze Hogendoorn;

10.1101/060079 — Neuroscience — Posted on 2016-06-21

124 Cryptic genetic differentiation of the sex-determining chromosome in the mosquito Aedes aegypti

Albin Fontaine;Igor Filipović;Thanyalak Fansiri;Ary Anthony Hoffmann;Gordana Rašić;Louis Lambrechts;

10.1101/060061 — Evolutionary Biology — Posted on 2016-06-21

125 Meta-aligner: Long-read alignment based on genome statistics

Damoun Nashta-ali;Ali Aliyari;Mohammad Amin Edrisi;Ahmad Ahmadian Moghadam;Seyed Abolfazl Motahari;Babak Hossein Khalaj;

10.1101/060129 — Bioinformatics — Posted on 2016-06-21

126 Tradict enables accurate prediction of eukaryotic transcriptional states from 100 marker genes

Surojit Biswas;Konstantin Kerner;Paulo Jose Pereira Lima Teixeira;Jeffery L Dangl;Vladimir Jojic;Philip A. Wigge;

10.1101/060111 — Bioinformatics — Posted on 2016-06-21

127 Mechanistic Modeling and Analysis of the Mammalian Unfolded Protein Response

Anirikh Chakrabarti;Lina Aboulmouna;Jeffrey D Varner;

10.1101/060020 — Systems Biology — Posted on 2016-06-21

128 Architecture of fully occupied GluA2 AMPA receptor - TARP complex elucidated by single particle cryo-electron microscopy

Yan Zhao;Shanshuang Chen;Craig Yoshioka;Isabelle Baconguis;Eric Gouaux;

10.1101/060046 — Neuroscience — Posted on 2016-06-21

129 The formation of extinction memory requires the accumulation of N6-methyl-2-deoxyadenosine in DNA

Xiang Li;Wei Wei;Quan Lin;Christophe Magnan;Michael Emami;Luis Eduardo Wearick-Silva;Thiago Viola;Paul Marshall;Rodrigo Grassi-Oliveira;Sarah Nainar;Cathrine Broberg Vagbo;Magnar Bjoras;Pierre Baldi;Robert Spitale;Timothy William Bredy;

10.1101/059972 — Neuroscience — Posted on 2016-06-22

130 The formation of extinction memory requires the accumulation of N6-methyl-2-deoxyadenosine in DNA

10.1101/059972 — Neuroscience — Posted on 2016-06-21

131 PASP - a whole-transcriptome poly(A) tail length determination assay for the Illumina platform

Botond Sipos;Adrian M Stütz;Greg Slodkowicz;Tim Massingham;Jan Korbel;Nick Goldman;

10.1101/060004 — Molecular Biology — Posted on 2016-06-21

132 Factors affecting intra-island genetic connectivity and diversity of an abundant and widespread island endemic, the San Clemente Island night lizard.

Stephen E Rice;Rulon W Clark;

10.1101/060038 — Ecology — Posted on 2016-06-21

133 Scanning the Horizon: challenges and solutions for neuroimaging research

Russell Poldrack;Chris I Baker;Joke Durnez;Krzysztof Gorgolewski;Paul M Matthews;Marcus Munafo;Thomas Nichols;Jean-Baptiste Poline;Edward Vul;Tal Yarkoni;

10.1101/059188 — Scientific Communication and Education — Posted on 2016-06-28

134 Scanning the Horizon: challenges and solutions for neuroimaging research

Russell Poldrack;Chris I Baker;Joke Durnez;Krzysztof Gorgolewski;Paul M Matthews;Marcus Munafo;Thomas Nichols;Jean-Baptiste Poline;Edward Vul;Tal Yarkoni;

10.1101/059188 — Scientific Communication and Education — Posted on 2016-06-16

135 An algorithm for fast preranked gene set enrichment analysis using cumulative statistic calculation

Alexey Sergushichev;

10.1101/060012 — Bioinformatics — Posted on 2016-06-20

136 Emergence of microbial diversity due to cross-feeding interactions in a spatial model of gut microbial metabolism

Milan J.A. van Hoek;Roeland M.H. Merks;

10.1101/059956 — Systems Biology — Posted on 2016-06-20

137 A temperature-dependent shift in dietary preference alters the viable temperature range of Drosophila

Marko Brankatschk;Theresia Gutmann;Michal Grzybek;Beate Brankatschk;Uenal Coskun;Suzanne Eaton;

10.1101/059923 — Ecology — Posted on 2016-06-20

138 Genomic dissection of an Icelandic epidemic of equine respiratory disease

Sigríður Björnsdóttir;Simon R Harris;Vilhjálmur Svansson;Eggert Gunnarsson;Ólöf Sigurðardóttir;Kristina Gammeljord;Karen F Steward;J Richard Newton;Carl Robinson;Amelia R. L. Charbonneau;Julian Parkhill;Matthew T. G. Holden;Andrew S. Waller;

10.1101/059949 — Microbiology — Posted on 2016-06-20

139 T-cell activation and HLA-regulated response to smoking in the deep airways of patients with multiple sclerosis

Johan Ockinger;Michael Hagemann-Jensen;Susanna Kullberg;Benita Engvall;Anders Eklund;Johan Grunewald;Fredrik Piehl;Tomas Olsson;Jan Wahlstrom;

10.1101/054502 — Immunology — Posted on 2016-06-20

140 The importance of litter quality for the role of arbuscular mycorrhizal fungi in plant litter decomposition

Eva Leifheit;Matthias C Rillig;

10.1101/059907 — Ecology — Posted on 2016-06-20

141 Interplay of cis and trans mechanisms driving transcription factor binding, chromatin, and gene expression evolution

Emily S Wong;Bianca M Schmitt;Anastasiya Kazachenka;David Thybert;Aisling Redmond;Frances Connor;Tim F Rayner;Christine Feig;Anne C Ferguson-Smith;John C Marioni;Paul Flicek;Duncan T Odom;

10.1101/059873 — Genomics — Posted on 2016-06-19

142 BlastPhyMe: A toolkit for rapid generation and analysis of protein-coding sequence datasets

Ryan K Schott;Daniel Gow;Belinda SW Chang;

10.1101/059881 — Bioinformatics — Posted on 2016-06-19

143 Emergence of wheat blast in Bangladesh was caused by a South American lineage of Magnaporthe oryzae

Tofazzal Islam;Daniel Croll;Pierre Gladieux;Darren Soanes;Antoine Persoons;Pallab Bhattacharjee;Shaid Hossain;Dipali Gupta;Md. Mahbubur Rahman;M Golam Mahboob;Nicola Cook;Moin Salam;Vanessa Bueno Sancho;Joao Nunes Maciel;Antonio Nani;Vanina Castroagudin;Juliana Teodora de Assis Reges;Paulo Ceresini;Sebastien Ravel;Ronny Kellner;Elisabeth Fournier;Didier Tharreau;marc-henri Lebrun;Bruce McDonald;Tim Stitt;Daniel Swan;Nicholas Talbot;Diane Saunders;Joe Win;Sophien Kamoun;

10.1101/059832 — Plant Biology — Posted on 2016-06-19

144 Unsupervised Learning of Temporal Features for Word Categorization in a Spiking Neural Network Model of the Auditory Brain

Irina Higgins;Simon Stringer;Jan Schnupp;

10.1101/059840 — Neuroscience — Posted on 2016-06-19

145 Happens in the best of subfamilies: Replacement and internalisation of co-obligate Serratia endosymbionts in Lachninae aphids

Alejandro Manzano-Marín;Gitta Szabó;Jean-Christophe Simon;Matthias Horn;Amparo Latorre;

10.1101/059816 — Evolutionary Biology — Posted on 2016-06-19

146 Analyzing climate variations on multiple timescales can guide Zika virus response measures

Angel G Munoz;Madeleine C Thomson;Lisa Goddard;Sylvain Aldighieri;

10.1101/059808 — Epidemiology — Posted on 2016-06-19

147 A phenome-wide examination of neural and cognitive function

Russell Poldrack;Eliza Congdon;William Triplett;Krzysztof Gorgolewski;Katherine Karlsgodt;Jeanette Mumford;Fred Sabb;Nelson Freimer;Edythe London;Tyrone Cannon;Robert Bilder;

10.1101/059733 — Neuroscience — Posted on 2016-06-19

148 Novel Partitivirus Infection of Bat White-nose Syndrome (WNS) Fungal Pathogen Pseudogymnoascus destructans Links Eurasian and North American Isolates

Ping Ren;Sunanda S. Rajkumar;Haixin Sui;Paul S. Masters;Natalia Martinkova;Alena Kubatova;Jiri Pikula;Sudha Chaturvedi;Vishnu Chaturvedi;

10.1101/059709 — Microbiology — Posted on 2016-06-19

149 The Precision Medicine Knowledge Base: an online application for collaborative editing, maintenance and sharing of structured clinical-grade cancer mutations interpretations

Linda Huang;Helen Fernandes;Hamid Zia;Peyman Tavassoli;Hanna Rennert;David Pisapia;Marcin Imielinski;Andrea Sboner;Mark A Rubin;Michael Kluk;Olivier Elemento;

10.1101/059824 — Genomics — Posted on 2016-06-19

150 Voodoo Machine Learning for Clinical Predictions

Sohrab Saeb;Luca Lonini;Arun Jayaraman;David C Mohr;Konrad P Kording;

10.1101/059774 — Bioinformatics — Posted on 2016-06-19

151 High-throughput biochemical profiling reveals Cas9 off-target binding and unbinding heterogeneity

Evan August Boyle;Johan Oscar Lennart Andreasson;Lauren Mallory Chircus;Samuel Henry Sternberg;Michelle Jennifer Wu;Chantal Katrin Guegler;Jennifer Anne Doudna;William James Greenleaf;

10.1101/059782 — Biochemistry — Posted on 2016-06-19

152 Accelerated cryo-EM structure determination with parallelisation using GPUs in RELION-2

Dari Kimanius;Bjorn O Forsberg;Sjors Scheres;Erik Lindahl;

10.1101/059717 — Biophysics — Posted on 2016-06-19

153 Potential energy landscapes reveal the information-theoretic nature of the epigenome

Garrett Jenkinson;Elisabet Pujadas;John Goutsias;Andrew P Feinberg;

10.1101/059766 — Genetics — Posted on 2016-06-18

154 The role of single occupancy effects on integrase dynamics in a cell-free system

Georgios Artavanis;Victoria Hsiao;Clarmyra A Hayes;Richard M Murray;

10.1101/059675 — Synthetic Biology — Posted on 2016-06-18

155 Firing patterns of serotonin neurons underlying cognitive flexibility

Sara Pinto dos Santos Matias;Eran Lottem;Guillaume Pierre Dugue;Zachary Frank Mainen;

10.1101/059758 — Neuroscience — Posted on 2016-06-18

156 Shedding light on the grey zone of speciation along a continuum of genomic divergence

Camille Roux;Christelle Fraisse;Jonathan Romiguier;Yoann Anciaux;Nicolas Galtier;Nicolas Bierne;

10.1101/059790 — Evolutionary Biology — Posted on 2016-06-18

157 ADAR-Independent A-to-I RNA Editing is Generally Adaptive for Sexual Reproduction in Fungi

Qinhu Wang;Cong Jiang;Huiquan Liu;Jin-Rong Xu;

10.1101/059725 — Evolutionary Biology — Posted on 2016-06-18

158 RSQ: a statistical method for quantification of isoform-specific structurome using transcriptome-wide structural profiling data

Yunfei Wang;Zhenyu Xuan;Xiaopeng Zhu;Ming Sun;Yong Chen;Michael Q Zhang;Min Chen;Yiwen Chen;Shikui Tu;

10.1101/043232 — Bioinformatics — Posted on 2016-06-18

159 The role of evolutionary selection in the dynamics of protein structure evolution

Amy I. Gilson;Ahmee Marshall-Christensen;Jeong-Mo Choi;Eugene I. Shakhnovich;

10.1101/059741 — Biophysics — Posted on 2016-06-18

160 Temporal Modulations Reveal Distinct Rhythmic Properties of Speech and Music

Nai Ding;Aniruddh Patel;Lin Chen;Henry Butler;Cheng Luo;David Poeppel;

10.1101/059683 — Neuroscience — Posted on 2016-06-18

161 Decoding brain activity using a large-scale probabilistic functional-anatomical atlas of human cognition

Timothy N Rubin;Oluwasanmi Koyejo;Krzysztof J Gorgolewski;Michael N Jones;Russell A Poldrack;Tal Yarkoni;

10.1101/059618 — Neuroscience — Posted on 2016-06-18

162 Enhanced gene expression plasticity as a mechanism of adaptation to a variable environment in a reef-building coral

Carly Kenkel;Mikhail V Matz;

10.1101/059667 — Genomics — Posted on 2016-06-18

163 “Gap Hunting” to identify multimodal distributions of DNA methylation

Shan V. Andrews;Christine Ladd-Acosta;Andrew P. Feinberg;Kasper D. Hansen;M. Daniele Fallin;

10.1101/059659 — Genomics — Posted on 2016-06-18

164 The genetics of an early Neolithic pastoralist from the Zagros, Iran

Marcos Gallego Llorente;Sarah Connell;Eppie R Jones;Deborah Merrett;Jeonsu Jeon;Anders Eriksson;Veronika Siska;Cristina Gamba;Chris Meiklejohn;Robert Beyer;Sungwon Jeon;Yung Sung Cho;Michael Hofreiter;Jong Bhak;Andrea Manica;Ron Pinhasi;

10.1101/059568 — Genetics — Posted on 2016-06-18

165 Higher stress and immunity responses are associated with higher mortality in reef-building coral exposed to a bacterial challenge

Rachel M Wright;Carly D. Kenkel;Carly E. Dunn;Erin N. Shilling;Line K. Bay;Mikhail V. Matz;

10.1101/059444 — Ecology — Posted on 2016-06-18

166 Comparing alternative pipelines for cross-platform microarray gene expression data integration with RNA-seq data in breast cancer

Alina Frolova;Vladyslav Bondarenko;Maria Obolenska;

10.1101/059600 — Bioinformatics — Posted on 2016-06-18

167 Analysis of recent and ancestral recombination reveals high-resolution population structure in Streptococcus pneumoniae

Rafal Mostowy;Nicholas J. Croucher;Cheryl P. Andam;Jukka Corander;William P. Hanage;Pekka Marttinen;

10.1101/059642 — Bioinformatics — Posted on 2016-06-18

168 Protocol: Genome-scale CRISPR-Cas9 Knockout and Transcriptional Activation Screening

Julia Joung;Silvana Konermann;Jonathan S Gootenberg;Omar O Abudayyeh;Randall J Platt;Mark D Brigham;Neville E Sanjana;Feng Zhang;

10.1101/059626 — Molecular Biology — Posted on 2016-06-18

169 Complex admixture preceded and followed the extinction of wisent in the wild

Karolina Wecek;Stefanie Hartmann;Johanna L. A. Paijmans;Ulrike Taron;Georgios Xenikoudakis;James A. Cahill;Peter D. Heintzman;Beth Shapiro;Gennady Baryshnikov;Aleksei N. Bunevich;Jennifer J. Crees;Roland Dobosz;Ninna Manaserian;Henryk Okarma;Malgorzata Tokarska;Samuel T. Turvey;Jan M. Wojcik;Waldemar Zyla;Jacek M. Szymura;Michael Hofreiter;Axel Barlow;

10.1101/059527 — Genomics — Posted on 2016-06-18

170 Meta population modelling of narwhals in East Canada and West Greenland

Lars Witting;

10.1101/059691 — Ecology — Posted on 2016-06-18

171 Prioritizing 2nd and 3rd order interactions via support vector ranking using sensitivity indices on static Wnt measurements - Part A

shriprakash sinha;

10.1101/059469 — Systems Biology — Posted on 2016-06-17

172 Auditory Nerve Stochasticity Impedes Category Learning: the Role of Cochlear Nucleus and Inferior Colliculus in Stabilising Auditory Nerve Firing

Irina Higgins;Simon Stringer;Jan Schnupp;

10.1101/059428 — Neuroscience — Posted on 2016-06-17

173 Heterologous protection against Asian Zika virus challenge in rhesus macaques

Matthew T Aliota;Dawn M Dudley;Christina M Newman;Emma L Mohr;Dane D Gellerup;Meghan E Breitbach;Connor R Buechler;Mustafa N Rasheed;Mariel S Mohns;Andrea M Weiler;Gabrielle L Barry;Kim L Weisgrau;Josh A Eudailey;Eva G Rakasz;Logan J Vosler;Jennifer Post;Saverio Capuano;Thaddeus G Golos;M Anthony Moody;Sallie R Permar;Jorge E Osorio;Thomas C Friedrich;Shelby L O'Connor;David H O'Connor;

10.1101/059592 — Immunology — Posted on 2016-06-17

174 Modulation of global transcriptional regulatory networks as a strategy for increasing kanamycin resistance of EF-G mutants

Aalap Mogre;Aswin Sai Narain Seshasayee;

10.1101/059501 — Genomics — Posted on 2016-06-17

175 Botrytis cinerea loss and restoration of virulence during in vitro culture follows flux in global DNA methylation

Jimmy Breen;Luis Mur;Anushen Sivakumaran;Aderemi Akinyemi;Mike Wilkinson;Carlos Marcelino Rodriguez Lopez;

10.1101/059477 — Genomics — Posted on 2016-06-17

176 The ciliary targeting of membrane proteins by a ternary complex comprising transportin1, Rab8 and the ciliary targeting signal

Viswanadh Madugula;Lei Lu;

10.1101/059451 — Cell Biology — Posted on 2016-06-17

177 MMinte: An application for predicting metabolic interactions among the microbial species in a community

Helena Mendes-Soares;Michael Mundy;Luis Mendes Soares;Nicholas Chia;

10.1101/059550 — Bioinformatics — Posted on 2016-06-17

178 Fractured tonotopy of functional neural clusters in mouse auditory cortex

Isabel Delgado Ruz;Simon Schultz;

10.1101/059493 — Neuroscience — Posted on 2016-06-17

179 Complement receptor 2 and IL-8 production identifies in adults and neonates naive T cells recently arising from the thymus

Marcin Lukasz Pekalski;Arcadio Rubio Garcia;Ricardo C Ferreira;Daniel B Rainbow;Deborah J Smyth;Meghavi Mashar;Jane Brady;Natalia Savinykh;Xaquin Castro Dopico;Sumiyya Mahmood;Simon Duley;Helen E Stevens;Neil M Walker;Antony J Cutler;Frank Waldron-Lynch;David B Dunger;Claire Shannon-Lowe;Alasdair J Coles;Joanne L Jones;Chris Wallace;John A Todd;Linda S Wicker;

10.1101/059535 — Immunology — Posted on 2016-06-17

180 Genetic variability in both the adaptive and innate immune systems contribute to Alzheimer’s and Parkinson’s disease risk

Sarah A Gagliano;Jennie G Pouget;John Hardy;Jo Knight;Michael R Barnes;Mina Ryten;Michael E Weale;

10.1101/059519 — Genomics — Posted on 2016-06-17

181 A direct multi-generational estimate of the human mutation rate from autozygous segments seen in thousands of parentally related individuals

Vagheesh M Narasimhan;Raheleh Rahbari;Aylwyn Scally;Arthur Wuster;Dan Mason;Yali Xue;John Wright;Richard C Trembath;Eamonn R Maher;David A van Heel;Adam Auton;Matthew E Hurles;Chris Tyler-Smith;Richard Durbin;

10.1101/059436 — Genomics — Posted on 2016-06-17

182 Accounting for genetic interactions is necessary for accurate prediction of extreme phenotypic values of quantitative traits in yeast

Simon K G Forsberg;Joshua S Bloom;Meru Sadhu;Leonid Kruglyak;Örjan Carlborg;

10.1101/059485 — Genetics — Posted on 2016-06-17

183 Reduced order modeling and analysis of the human complement system

Adithya Sagar;Wei Dai;Mason Minot;Jeffrey D Varner;

10.1101/059386 — Systems Biology — Posted on 2016-06-16

184 Distinct Cellular States Determine Calcium Signaling Response

Jason Yao;Roy Wollman;

10.1101/059287 — Systems Biology — Posted on 2016-06-16

185 Characterizing the epigenetic signatures of the human regulatory elements: A pilot study

Sawyer L Clement;Hani Z Girgis;

10.1101/059394 — Genomics — Posted on 2016-06-16

186 Do Regional Brain Volumes and Major Depressive Disorder Share Genetic Architecture: a study in Generation Scotland (n=19,762), UK Biobank (n=24,048) and the English Longitudinal Study of Ageing (n=5,766)

Eleanor M Wigmore;Toni-Kim Clarke;Mark J Adams;Ana M Fernandez-Pujals;Jude Gibson;Gail Davies;Lynsey S Hall;Yanni Zeng;Philippa A Thomson;Caroline Hayward;Blair H Smith;Lynne J Hocking;Sandosh Padmanabhan;Ian J Deary;David J Porteous;Kristin K Nicodemus;Andrew M McIntosh;

10.1101/059352 — Genetics — Posted on 2016-06-20

187 Do Regional Brain Volumes and Major Depressive Disorder Share Genetic Architecture: a study in Generation Scotland (n=19,762), UK Biobank (n=24,048) and the English Longitudinal Study of Ageing (n=5,766)

10.1101/059352 — Genetics — Posted on 2016-06-16

188 The genetic structure of the world’s first farmers

Iosif Lazaridis;Dani Nadel;Gary Rollefson;Deborah C. Merrett;Nadin Rohland;Swapan Mallick;Daniel Fernandes;Mario Novak;Beatriz Gamarra;Kendra Sirak;Sarah Connell;Kristin Stewardson;Eadaoin Harney;Qiaomei Fu;Gloria Gonzalez-Fortes;Songül Alpaslan Roodenberg;Gyorgy Lengyel;Fanny Bocquentin;Boris Gasparian;Janet M. Monge;Michael Gregg;Vered Eshed;Ahuva-Sivan Mizrahi;Christopher Meiklejohn;Fokke Gerritsen;Luminita Bejenaru;Matthias Blueher;Archie Campbell;Gianpero Cavalleri;David Comas;Philippe Froguel;Edmund Gilbert;Shona M. Kerr;Peter Kovacs;Johannes Krause;Darren McGettigan;Michael Merrigan;D.

10.1101/059311 — Genetics — Posted on 2016-06-16

189 Monogamy promotes worker sterility in insect societies

Nicholas G Davies;Andy Gardner;

10.1101/059154 — Evolutionary Biology — Posted on 2016-06-16

190 RiVIERA-MT: A Bayesian model to infer risk variants in related traits using summary statistics and functional genomic annotations

Yue Li;Manolis Kellis;

10.1101/059345 — Bioinformatics — Posted on 2016-06-16

191 RiVIERA-beta: Joint Bayesian inference of risk variants and tissue-specific epigenomic enrichments across multiple complex human diseases

Yue Li;Manolis Kellis;

10.1101/059329 — Bioinformatics — Posted on 2016-06-16

192 microRNA-mRNA interaction identification in Wilms tumor using principalcomponent analysis based unsupervised feature extraction

Y-h. Taguchi;

10.1101/059295 — Bioinformatics — Posted on 2016-06-16

193 In situ replication rates for uncultivated bacteria in microbial communities

Christopher T Brown;Matthew R Olm;Brian C Thomas;Jillian F Banfield;

10.1101/057992 — Bioinformatics — Posted on 2016-06-16

194 Genome resources for climate-resilient cowpea, an essential crop for food security

María Muñoz-Amatriaín;Hamid Mirebrahim;Pei Xu;Steve I Wanamaker;MingCheng Luo;Hind Alhakami;Matthew Alpert;Ibrahim Atokple;Benoit Joseph Batieno;Ousmane Boukar;Serdar Bozdag;Ndiaga Cisse;Issa Drabo;Jeffrey D Ehlers;Andrew Farmer;Christian Fatokun;Yong Q Gu;Yi-Ning Guo;Bao-Lam Huynh;Scott A Jackson;Francis Kusi;Cynthia T Lawley;Mitchell R Lucas;Yaqin Ma;Michael P Timko;Jiajie Wu;Frank You;Philip A Roberts;Stefano Lonardi;Timothy J Close;

10.1101/059261 — Genomics — Posted on 2016-06-15

195 The Evolutionary Trade-off between Stem Cell Niche Size, Aging, and Tumorigenesis

Vincent L. Cannataro;Scott A. McKinley;Colette M. St. Mary;

10.1101/059279 — Evolutionary Biology — Posted on 2016-06-15

196 Aggregation tendencies of a female Vaejovis carolinianus population of France Mountain, Tennessee

Bob Baggett;Hannah E Ritter;Margaret E Melendez;

10.1101/058362 — Ecology — Posted on 2016-06-15

197 Retreat Site Selection in Vaejovis carolinianus Populations of Tennessees Upper Cumberland Region

Bob A Baggett;

10.1101/058354 — Ecology — Posted on 2016-06-15

198 Probing cytoplasmic viscosity in the confined geometry of tip-growing plant cells via FRAP

James L Kingsley;Jeffrey P Bibeau;Zhilu Chen;Xinming Huang;Luis Vidali;Erkan Tuzel;

10.1101/059220 — Biophysics — Posted on 2016-06-15

199 Navigating the phenotype frontier: The Monarch Initiative

Julie McMurry;Sebastian Kohler;James Balhoff;Charles Borromeo;Matthew Brush;Seth Carbon;Tom Conlin;Nathan Dunn;Mark Engelstad;Erin Foster;Jean-Philippe Gourdine;Julius Jacobsen;Daniel Keith;Bryan Laraway;Suzanna Lewis;Jeremy Nguyen Xuan;Kent Shefchek;Nicole Vasilevsky;Zhou Yuan;Nicole Washington;Harry Hochheiser;Christopher Mungall;Tudor Groza;Damian Smedley;Peter Robinson;Melissa Haendel;

10.1101/059204 — Bioinformatics — Posted on 2016-06-15

200 Adapterama I: Universal stubs and primers for thousands of dual-indexed Illumina libraries (iTru & iNext)

Travis C. Glenn;Roger Nilsen;Troy J. Kieran;John W. Finger;Todd W. Pierson;Kerin E. Bentley;Sandra Hoffberg;Swarnali Louha;Francisco J. Garcia-De-Leon;Miguel Angel del Rio Portilla;Kurt Reed;Jennifer L. Anderson;Jennifer K. Meece;Sammy Aggery;Romdhane Rekaya;Magdy Alabady;Myriam Belanger;Kevin Winker;Brant C. Faircloth;

10.1101/049114 — Genomics — Posted on 2016-06-15

201 A natural encoding of genetic variation in a Burrows-Wheeler Transform to enable mapping and genome inference

Sorina Maciuca;Carlos del Ojo Elias;Gil McVean;Zamin Iqbal;

10.1101/059170 — Bioinformatics — Posted on 2016-06-15

202 3D-Printed Autonomous Capillaric Circuits

Ayokunle O Olanrewaju;Alessandra Robillard;Milad Dagher;David Juncker;

10.1101/059238 — Bioengineering — Posted on 2016-06-15

203 Ecological Representations

Sabrina Golonka;Andrew D Wilson;

10.1101/058925 — Animal Behavior and Cognition — Posted on 2016-06-15

204 A formula to estimate a researcher’s impact by prioritizing highly cited publications

Aleksey V Belikov;Vitaly V Belikov;

10.1101/058990 — Scientific Communication and Education — Posted on 2016-06-15

205 A formula to estimate a Researcher’s impact by prioritizing highly cited publications

Aleksey V Belikov;Vitaly V Belikov;

10.1101/058990 — Scientific Communication and Education — Posted on 2016-06-15

206 Modelling the effects of bacterial cell state and spatial location on tuberculosis treatment: Insights from a hybrid multiscale cellular automaton model

Ruth Bowness;Mark A. J. Chaplain;Gibin G. Powathill;Stephen H. Gillespie;

10.1101/059113 — Microbiology — Posted on 2016-06-15

207 Population Structure Analysis of Globally Diverse Bull Genomes

Neo Christopher Chung;Joanna Szyda;Magdalena Fraszczak;1000 Bull Genomes Project;

10.1101/059139 — Genomics — Posted on 2016-06-15

208 A genomic view of the peopling of the Americas

Pontus Skoglund;David Reich;

10.1101/058966 — Evolutionary Biology — Posted on 2016-06-15

209 Bayesian inference of ancestral recombination graphs for bacterial populations

Timothy G Vaughan;David Welch;Alexei J Drummond;Patrick J Biggs;Tessy George;Nigel P French;

10.1101/059105 — Evolutionary Biology — Posted on 2016-06-15

210 Uniparental inheritance promotes adaptive evolution in cytoplasmic genomes

Joshua R Christie;Madeleine Beekman;

10.1101/059089 — Evolutionary Biology — Posted on 2016-06-15

211 Programmed cell death can increase the efficacy of microbial bet-hedging

Eric Libby;William W. Driscoll;William C. Ratcliff;

10.1101/059071 — Evolutionary Biology — Posted on 2016-06-15

212 RNase reverses segment sequence in the anterior of a beetle egg (Callosobruchus maculatus, Coleoptera)

Jitse Michiel van der Meer;

10.1101/059162 — Developmental Biology — Posted on 2016-06-15

213 Dynamic Nucleosome Movement Provides Structural Information of Topological Chromatin Domains in Living Human Cells

Soya Shinkai;Tadasu Nozaki;Kazuhiro Maeshima;Yuichi Togashi;

10.1101/059147 — Biophysics — Posted on 2016-06-22

214 Dynamic Nucleosome Movement Provides Structural Information of Topological Chromatin Domains in Living Human Cells

Soya Shinkai;Tadasu Nozaki;Kazuhiro Maeshima;Yuichi Togashi;

10.1101/059147 — Biophysics — Posted on 2016-06-15

215 Visualizing tumor evolution with the fishplot package for R

Christopher A Miller;Joshua McMichael;Ha X Dang;Christopher A Maher;Li Ding;Timothy J Ley;Elaine R Mardis;Richard K Wilson;

10.1101/059055 — Bioinformatics — Posted on 2016-06-15

216 mmgenome: a toolbox for reproducible genome extraction from metagenomes

Soeren M Karst;Rasmus H Kirkegaard;Mads Albertsen;

10.1101/059121 — Bioinformatics — Posted on 2016-06-15

217 ANFIS-based Fuzzy Systems for Searching DNA-Protein Binding Sites

Dianhui Wang;Monther Alhamdoosh;Witold Pedrycz;

10.1101/058800 — Bioinformatics — Posted on 2016-06-15

218 Quantitative, model-based estimates of variability in the serial interval of Plasmodium falciparum malaria

John H. Huber;Geoffrey L. Johnston;Bryan Greenhouse;David L. Smith;T. Alex Perkins;

10.1101/058859 — Epidemiology — Posted on 2016-06-15

219 Zika Virus in the Human Placenta and Developing Brain: Cell Tropism and Drug Inhibition

Hanna Retallack;Elizabeth Di Lullo;Carolina Arias;Kristeene A. Knopp;Carmen Sandoval-Espinosa;Matthew T. Laurie;Yan Zhou;Matthew Gormley;Walter R. Mancia Leon;Robert Krencik;Erik M. Ullian;Julien Spatazza;Alex A. Pollen;Katherine Ona;Tomasz J. Nowakowski;Joseph L. DeRisi;Susan J. Fisher;Arnold R. Kriegstein;

10.1101/058883 — Cell Biology — Posted on 2016-06-15

220 Zika Virus in the Human Placenta and Developing Brain: Cell Tropism and Drug Inhibition

10.1101/058883 — Cell Biology — Posted on 2016-06-15

221 A robust role for motor cortex

Goncalo Lopes;Joana Nogueira;Joseph J. Paton;Adam R. Kampff;

10.1101/058917 — Neuroscience — Posted on 2016-06-14

222 Precise Cas9 targeting enables genomic mutation prevention

Alejandro Chavez;Benjamin W Pruitt;Marcelle Tuttle;Rebecca S Shapiro;Ryan J Cecchi;Jordan Winston;Brian M Turczyk;Michael Tung;James J Collins;George M Church;

10.1101/058974 — Synthetic Biology — Posted on 2016-06-14

223 GPR4 Deficiency Alleviates Intestinal Inflammation in a Mouse Model of Inflammatory Bowel Disease

Edward J Sanderlin;Nancy R Leffler;Kvin Lertpiriyapong;Qi Cai;Heng Hong;Vasudevan Bakthavatchalu;James G Fox;Joani Zary Oswald;Calvin R Justus;Elizabeth A Krewson;Dorcas O'Rourke;Li V Yang;

10.1101/059014 — Pathology — Posted on 2016-06-14

224 Mechanical flexibility reduces the foreign body response to long- term implanted microelectrodes in rabbit cortex

Harbaljit S Sohal;Gavin J Clowry;Andrew Jackson;Anthony O'Neill;Stuart N Baker;

10.1101/058982 — Neuroscience — Posted on 2016-06-14

225 Long-term, layer-specific modification of spontaneous activity in the mouse somatosensory cortex following sensory stimulation

Elena Phoka;Aleksandra Berditchevskaia;Mauricio Barahona;Simon Schultz;

10.1101/058958 — Neuroscience — Posted on 2016-06-14

226 Unbiased whole-genome deep sequencing of human and porcine stool samples reveals circulation of multiple groups of rotaviruses and a putative zoonotic infection

My V.T. Phan;Pham Hong Anh;Nguyen Van Cuong;Bas B. Oude Munnink;Lia van der Hoek;Phuc Tran My;Tue Ngo Tri;Juliet E. Bryant;Stephen Baker;Guy Thwaites;Mark Woolhouse;Paul Kellam;Maia A Rabaa;Matthew L Cotten;

10.1101/058875 — Genomics — Posted on 2016-06-14

227 Gene tree discordance generates patterns of diminishing convergence over time

Fabio K Mendes;Yoonsoo Hahn;Matthew W Hahn;

10.1101/059006 — Evolutionary Biology — Posted on 2016-06-14

228 A Polymer Model with Epigenetic Recolouring Reveals a Pathway for the de novo Establishment and 3D Organisation of Chromatin Domains

Davide Michieletto;Enzo Orlandini;Davide Marenduzzo;

10.1101/058933 — — Posted on 2016-06-14

229 Refutation: Spontaneous secondary mutations confound analysis of the essential two component system WalKR in Staphylococcus aureus

Ian R. Monk;Torsten Seemann;Benjamin P. Howden;Timothy P. Stinear;

10.1101/058842 — Microbiology — Posted on 2016-06-14

230 A logic approach to modeling nomenclatural change

Nico Franz;Chao Zhang;Joohyung Lee;

10.1101/058834 — Evolutionary Biology — Posted on 2016-06-14

231 Networks that link cytoskeletal regulators and diaphragm proteins underpin filtration function in Drosophila nephrocytes.

Simi Muraleedharan;Helen Skaer;Maneesha S Inamdar;

10.1101/056911 — Cell Biology — Posted on 2016-06-14

232 A cell type-specific expression signature predicts haploinsufficient autism-susceptibility genes

Chaolin Zhang;Yufeng Shen;

10.1101/058826 — Bioinformatics — Posted on 2016-06-14

233 FPD: A comprehensive phosphorylation database in fungi

Youhuang Bai;Bin Chen;Yincong Zhou;Silin Ren;Qin Xu;Ming Chen;Shihua Wang;

10.1101/058867 — Bioinformatics — Posted on 2016-06-14

234 Genetic and transcriptional analysis of human host response to healthy gut microbiome

Allison L Richards;Michael B Burns;Adnan Alazizi;Luis B Barreiro;Roger Pique-Regi;Ran Blekhman;Francesca Luca;

10.1101/058784 — Genomics — Posted on 2016-06-13

235 SourceData - a semantic platform for curating and searching figures

Robin Liechti;Nancy George;Sara El-Gebali;Lou Götz;Isaac Crespo;Ioannis Xenarios;Thomas Lemberger;

10.1101/058529 — Bioinformatics — Posted on 2016-06-20

236 SourceData - a semantic platform for curating and searching figures

Robin Liechti;Nancy George;Sara El-Gebali;Lou Götz;Isaac Crespo;Ioannis Xenarios;Thomas Lemberger;

10.1101/058529 — Bioinformatics — Posted on 2016-06-13

237 Intrinsic functional architecture of the macaque dorsal and ventral lateral frontal cortex

Alexandros Goulas;Peter Stiers;R. Matthew Hutchison;Stefan Everling;Michael Petrides;Daniel S Margulies;

10.1101/058776 — Neuroscience — Posted on 2016-06-13

238 Operant Behavior in Model Systems

Bjoern Brembs;

10.1101/058719 — Animal Behavior and Cognition — Posted on 2016-06-13

239 The CD4+ T cell regulatory network mediates inflammatory responses during acute hyperinsulinemia: a simulation study

Mariana Esther Martinez-Sanchez;Marcia Hiriart;Elena Alvarez-Buylla;

10.1101/058743 — Systems Biology — Posted on 2016-06-13

240 Local and thalamic origins of ongoing and sensory evoked cortical correlations

Katayun Cohen-Kashi Malina;Boaz Mohar;Akiva N Rappaport;Ilan Lampl;

10.1101/058727 — Neuroscience — Posted on 2016-06-13

241 ICGenealogy: Mapping the function of neuronal ion channels in model and experiment

William F Podlaski;Alexander Seeholzer;Lukas N Groschner;Gero Miesenboeck;Rajnish Ranjan;Tim P Vogels;

10.1101/058685 — Neuroscience — Posted on 2016-06-16

242 ICGenealogy: Mapping the function of neuronal ion channels in model and experiment

William F Podlaski;Alexander Seeholzer;Lukas N Groschner;Gero Miesenboeck;Rajnish Ranjan;Tim P Vogels;

10.1101/058685 — Neuroscience — Posted on 2016-06-14

243 ICGenealogy: Mapping the function of neuronal ion channels in model and experiment

William F Podlaski;Alexander Seeholzer;Lukas N Groschner;Gero Miesenboeck;Rajnish Ranjan;Tim P Vogels;

10.1101/058685 — Neuroscience — Posted on 2016-06-13

244 Linking comparative genomics and environmental distribution patterns of microbial populations through metagenomics

Tom O Delmont;A. Murat Eren;

10.1101/058750 — Microbiology — Posted on 2016-06-13

245 Clustered brachiopod Hox genes are not expressed collinearly and are associated with lophotrochozoan novelties

Sabrina M. Schiemann;Jose M. M. Martin-Duran;Aina Borve;Bruno C. Vellutini;Yale J. Passamaneck;Andreas Hejnol;

10.1101/058669 — Evolutionary Biology — Posted on 2016-06-13

246 Lazarus effects: the frequency and genetic causes of Escherichia coli population recovery under lethal heat stress

Shaun M Hug;Brandon Gaut;

10.1101/058479 — Evolutionary Biology — Posted on 2016-06-13

247 Universal metabarcoding of pico- to mesoplankton reveals seasonal dynamics and a bacterial bloom

Christian Wurzbacher;Katrin Attermeyer;Marie Therese Kettner;Clara Flintrop;Norman Warthmann;Sabine Hilt;Hans-Peter Grossart;Michael T Monaghan;

10.1101/058628 — Ecology — Posted on 2016-06-13

248 Gene expression changes after heat shock of procyclic-form Trypanosoma brucei suggest that stress has a role in differentiation to mammalian-infective forms.

Christine Clayton;Igor Minia;Clementine Merce;Monica Terrao;

10.1101/058701 — Cell Biology — Posted on 2016-06-13

249 Leveraging Functional Annotations in Genetic Risk Prediction for Human Complex Diseases

Yiming Hu;Qiongshi Lu;Ryan Powles;Xinwei Yao;Can Yang;Fang Fang;Xinran Xu;Hongyu Zhao;

10.1101/058768 — Bioinformatics — Posted on 2016-06-13

250 Task-specific shaping of feature-based attention in area MT

Bastian Schledde;Fingal Orlando Galashan;Magdalena Przybyla;Andreas Kurt Kreiter;Detlef Wegener;

10.1101/058693 — Neuroscience — Posted on 2016-06-13

251 Modeling and Analysis of Hormone and Mitogenic Signal Integration in Prostate Cancer

Katharine Rogers;Joseph Wayman;Ryan Tasseff;Caitlin Gee;Matthew DeLisa;Jeffrey Varner;

10.1101/058552 — Systems Biology — Posted on 2016-06-13

252 Sacral agenesis: A whole exome sequencing and copy number study

Robert Milan Porsch;Elisa Merello;Patrizia De Marco;Guo Cheng;Laura Rodriguez;Paul Tam;Stacey Cherny;Pak Sham;Valeria Carpa;Maria-Mercè Garcia-Barcelo;Desmond Campbell;

10.1101/058578 — Pathology — Posted on 2016-06-13

253 Towards an integration of deep learning and neuroscience

Adam Henry Marblestone;Greg Wayne;Konrad P Kording;

10.1101/058545 — Neuroscience — Posted on 2016-06-13

254 Atypical Salmonella enterica serovars in murine and human infection models: Is it time to reassess our approach to the study of salmonellosis?

Daniel Hurley;Maria Hoffmann;Tim Muruvanda;Marc W Allard;Eric W Brown;Marta Martins;Séamus Fanning;

10.1101/058610 — Microbiology — Posted on 2016-06-13

255 Atypical Salmonella enterica serovars in murine and human infection models: Is it time to reassess our approach to the study of salmonellosis?

Daniel Hurley;Maria Hoffmann;Tim Muruvanda;Marc W Allard;Eric W Brown;Marta Martins;Séamus Fanning;

10.1101/058610 — Microbiology — Posted on 2016-06-13

256 Maintaining proton homeostasis is an essential role of glucose metabolism in cell survival

Yanfen Cui;Yuanyuan Wang;Pan Xing;Li Qiu;Miao Liu;Xin Wang;Guoguang Ying;Binghui Li;

10.1101/058594 — Cancer Biology — Posted on 2016-06-13

257 Learning from critical care management of sheep receiving extra-corporeal membrane oxygenation for smoke-induced acute lung injury as a tool for processing large clinical datasets

Saul Chemonges;

10.1101/058511 — Scientific Communication and Education — Posted on 2016-06-12

258 Familiarity Facilitates Feature-based Face Processing

Matteo Visconti di Oleggio Castello;Kelsey G. Wheeler;Carlo Cipolli;Maria Ida Gobbini;

10.1101/058537 — Neuroscience — Posted on 2016-06-12

259 Video-rate volumetric functional imaging of the brain at synaptic resolution

Rongwen Lu;Wenzhi Sun;Yajie Liang;Aaron Kerlin;Jens Bierfeld;Johannes Seelig;Daniel E. Wilson;Benjamin Scholl;Boaz Mohar;Masashi Tanimoto;Minoru Koyama;David Fitzpatrick;Michael B. Orger;Na Ji;

10.1101/058495 — Neuroscience — Posted on 2016-06-12

260 Task demands affect spatial reference frame weighting during tactile localization in sighted and congenitally blind adults

Jonathan T. W. Schubert;Stephanie Badde;Brigitte Roeder;Tobias Heed;

10.1101/056515 — Neuroscience — Posted on 2016-06-12

261 Vibrio natriegens, a new genomic powerhouse

Henry H Lee;Nili Ostrov;Brandon G Wong;Michaela A Gold;Ahmad Khalil;George M Church;

10.1101/058487 — Genomics — Posted on 2016-06-12

262 Accurate Predictions of Postmortem Interval Using Linear Regression Analyses of Gene Meter Expression Data

M Colby Hunter;Alexander Pozhitkov;Peter Anthony Noble;

10.1101/058370 — Genomics — Posted on 2016-06-12

263 The heritability of pathogen traits - definitions and estimators

Venelin Mitov;Tanja Stadler;

10.1101/058503 — Genetics — Posted on 2016-06-12

264 Deciphering the wisent demographic and adaptive histories from individual whole-genome sequences

Mathieu Gautier;Katayoun Moazami-Goudarzi;Leveziel Hubert;Hugues Parinello;Cecile Grohs;Stephanie Rialle;Rafal Kowalczyk;Laurence Flori;

10.1101/058446 — Evolutionary Biology — Posted on 2016-06-12

265 Drift barriers to quality control when genes are expressed at different levels

Kun Xiong;Jay P McEntee;David Porfirio;Joanna Masel;

10.1101/058453 — — Posted on 2016-06-12

266 Comment on Smaers et al. (2016): A nonviable phylogenetic comparative method hampered by circularity, inaccuracy, and bias

Randi H Griffin;Gabriel S Yapuncich;

10.1101/058420 — Evolutionary Biology — Posted on 2016-06-12

267 Vision and locomotion shape the interactions between neuron types in mouse visual cortex

Mario Dipoppa;Adam Ranson;Michael Krumin;Marius Pachitariu;Matteo Carandini;Kenneth D Harris;

10.1101/058396 — Neuroscience — Posted on 2016-06-11

268 Evolution of resistance against CRISPR/Cas9 gene drive

Robert L Unckless;Andrew G Clark;Philipp W Messer;

10.1101/058438 — Evolutionary Biology — Posted on 2016-06-11

269 Estimating the efficacy of transcranial magnetic stimulation in small animals

Lari M Koponen;Jaakko O Nieminen;Risto J Ilmoniemi;

10.1101/058271 — Neuroscience — Posted on 2016-06-11

270 Structural changes following the reversal of a Y chromosome to an autosome in Drosophila pseudoobscura

Ching-Ho Chang;Amanda M Larracuente;

10.1101/058412 — Genomics — Posted on 2016-06-11

271 An ancient fecundability-associated polymorphism switches a repressor into an enhancer of endometrial TAP2 expression

Katelyn M. Mika;Vincent J. Lynch;

10.1101/058388 — Genetics — Posted on 2016-06-11

272 Exploring the genetic architecture of inflammatory bowel disease by whole genome sequencing identifies association at ADCY7

Yang Luo;Katrina M de Lange;Luke Jostins;Loukas Moutsianas;Joshua Randall;Nicholas A Kennedy;Christopher A Lamb;Shane McCarthy;Tariq Ahmad;Cathryn Edwards;Eva Goncalves Serra;Ailsa Hart;Chris Hawkey;John C Mansfield;Craig Mowat;William G Newman;Sam Nichols;Martin Pollard;Jack Satsangi;Alison Simmons;Mark Tremelling;Holm Uhlig;David W Wilson;James C Lee;Natalie J Prescott;Charlie W Lees;Christopher G Mathew;Miles Parkes;Jeffrey C Barrett;Carl A Anderson;

10.1101/058347 — Genetics — Posted on 2016-06-11

273 Post-selection Inference Following Aggregate Level Hypothesis Testing in Large Scale Genomic Data

Ruth Heller;Nilanjan Chatterjee;Abba Krieger;Jianxin Shi;

10.1101/058404 — Bioinformatics — Posted on 2016-06-11

274 Thanatotranscriptome: genes actively expressed after organismal death

Alexander E Pozhitkov;Rafik Neme;Tomislav Domazet-Loso;Brian Leroux;Shivani Soni;Diethard Tautz;Peter Anthony Noble;

10.1101/058305 — Systems Biology — Posted on 2016-06-11

275 Thanatotranscriptome: genes actively expressed after organismal death

Alexander E Pozhitkov;Rafik Neme;Tomislav Domazet-Loso;Brian Leroux;Shivani Soni;Diethard Tautz;Peter Anthony Noble;

10.1101/058305 — Systems Biology — Posted on 2016-06-10

276 Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease

Katrina M de Lange;Loukas Moutsianas;James C Lee;Christopher A Lamb;Yang Luo;Nicholas A Kennedy;Luke Jostins;Daniel L Rice;Javier Gutierrez-Achury;Sun-Gou Ji;Graham Heap;Elaine R Nimmo;Cathryn Edwards;Paul Henderson;Craig Mowat;Jeremy Sanderson;Jack Satsangi;Alison Simmons;David C Wilson;Mark Tremelling;Ailsa Hart;Christopher G Mathew;William G Newman;Miles Parkes;Charles W Lees;Holm Uhlig;Chris Hawkey;Natalie J Prescott;Tariq Ahmad;John Mansfield;Carl A Anderson;Jeffrey Barrett;

10.1101/058255 — Genomics — Posted on 2016-06-10

277 Gene-tree reconciliation with MUL-trees to resolve polyploidy events

Gregg W.C. Thomas;S. Hussain Ather;Matthew W. Hahn;

10.1101/058149 — Evolutionary Biology — Posted on 2016-06-10

278 Exposing the diversity of multiple infection patterns

Mircea T Sofonea;Samuel Alizon;Yannis Michalakis;

10.1101/058263 — Epidemiology — Posted on 2016-06-10

279 Characterizing and predicting cyanobacterial blooms in an 8-year amplicon sequencing time-course

Nicolas Tromas;Nathalie Fortin;Larbi Bedrani;Yves Terrat;Pedro Cardoso;David Bird;Charles W Greer;B. Jesse Shapiro;

10.1101/058289 — Microbiology — Posted on 2016-06-10

280 Regulation of global transcription in E. coli by Rsd and 6S RNA

Avantika Lal;Sandeep Krishna;Aswin Sai Narain Seshasayee;

10.1101/058339 — Genomics — Posted on 2016-06-10

281 Controlling the rate of GWAS false discoveries

Damian Brzyski;Christine B. Peterson;Piotr Sobczyk;Emmanuel J. Candes;Malgorzata Bogdan;Chiara Sabatti;

10.1101/058230 — Genomics — Posted on 2016-06-10

282 MutPrior:An Ensemble Method for Ranking Genes in Cancer

Shailesh Patil;Sreya Dey;Randeep Singh;

10.1101/058222 — Genomics — Posted on 2016-06-10

283 Polygenic scores using summary statistics via penalized regression

Timothy Mak;Robert Milan Porsch;Shing Wan Choi;Xueya Zhou;Pak Chung Sham;

10.1101/058214 — Genomics — Posted on 2016-06-10

284 Hipk is required for JAK/STAT activity and promotes hemocyte-derived tumorigenesis

Jessica A. Blaquiere;Nathan B. Wray;Esther M. Verheyen;

10.1101/058156 — Developmental Biology — Posted on 2016-06-10

285 Differential analysis of RNA-Seq incorporating quantification uncertainty

Harold J Pimentel;Nicolas Bray;Suzette Puente;Páll Melsted;Lior Pachter;

10.1101/058164 — Bioinformatics — Posted on 2016-06-10

286 To what extent are the terminal stages of sepsis, septic shock, SIRS, and multiple organ dysfunction syndrome actually driven by a prion/amyloid form of fibrin? bioRxiv preprint.

Douglas Bruce Kell;Etheresia Pretorius;

10.1101/057851 — Immunology — Posted on 2016-06-10

287 Theta-burst transcranial magnetic stimulation to the prefrontal or parietal cortex does not impair metacognitive visual awareness

Daniel Bor;David J Schwartzman;Adam B Barrett;Anil K Seth;

10.1101/058032 — Neuroscience — Posted on 2016-06-09

288 Actomyosin Dynamics Determine the Extension and Retraction of Filopodia on Neuronal Dendrites

Olena O Marchenko;Sulagna Das;Ji Yu;Igor L Novak;Vladimir I Rodionov;Nadia Efimova;Tatiana Svitkina;Charles W Wolgemuth;Leslie M Loew;

10.1101/057919 — Biophysics — Posted on 2016-06-16

289 Actomyosin Dynamics Determine the Extension and Retraction of Filopodia on Neuronal Dendrites

Olena O Marchenko;Sulagna Das;Ji Yu;Igor L Novak;Vladimir I Rodionov;Nadia Efimova;Tatiana Svitkina;Charles W Wolgemuth;Leslie M Loew;

10.1101/057919 — Biophysics — Posted on 2016-06-09

290 The impact of structural variation on human gene expression

Colby Chiang;Alexandra J Scott;Joe R Davis;Emily K Tsang;Xin Li;Yungil Kim;Farhan N Damani;Liron Ganel;GTEx Consortium;Stephen B Montgomery;Alexis Battle;Donald F Conrad;Ira M Hall;

10.1101/055962 — Genomics — Posted on 2016-06-09

291 Human germline mutation and the erratic evolutionary clock

Priya Moorjani;Ziyue Gao;Molly Przeworski;

10.1101/058024 — Evolutionary Biology — Posted on 2016-06-09

292 Tandem duplication events in the expansion of the small heat shock protein gene family in Solanum lycopersicum (cv. Heinz 1706)

Flavia J Krsticevic;Débora P Arce;Joaquin Ezpeleta;Elizabeth Tapia;

10.1101/057182 — Evolutionary Biology — Posted on 2016-06-09

293 Dynamics Affecting the Risk of Silent Circulation When Oral Polio Vaccination Is Stopped

James S Koopman;Christopher J Henry;Joonha Park;Joseph Eisenberg;Marisa Eisenberg;Edward L Ionides;

10.1101/058099 — Epidemiology — Posted on 2016-06-09

294 Behavioural effects of temperature on ectothermic animals: unifying thermal physiology and behavioural plasticity

Paul K. Abram;Guy Boivin;Joffrey Moiroux;Jacques Brodeur;

10.1101/056051 — Ecology — Posted on 2016-06-09

295 Drosophila sensory cilia lacking MKS-proteins exhibit striking defects during development but only subtle defects in adults

Metta B. Pratt;Joshua S. Titlow;Ilan Davis;Amy R. Barker;Helen R. Dawe;Jordan W. Raff;Helio Roque;

10.1101/058081 — Developmental Biology — Posted on 2016-06-10

296 Drosophila sensory cilia lacking MKS-proteins exhibit striking defects during development but only subtle defects in adults

Metta B. Pratt;Joshua S. Titlow;Ilan Davis;Amy R. Barker;Helen R. Dawe;Jordan W. Raff;Helio Roque;

10.1101/058081 — Developmental Biology — Posted on 2016-06-09

297 HIV-1 gag-pol mRNA localization regulates the site of virion assembly

Jordan T Becker;Nathan M Sherer;

10.1101/057299 — Cell Biology — Posted on 2016-06-09

298 Centrosome centering and decentering by microtubule network rearrangement

Gaelle Letort;Francois Nedelec;Laurent Blanchoin;Manuel Thery;

10.1101/057968 — Cell Biology — Posted on 2016-06-11

299 Centrosome centering and decentering by microtubule network rearrangement

Gaelle Letort;Francois Nedelec;Laurent Blanchoin;Manuel Thery;

10.1101/057968 — Cell Biology — Posted on 2016-06-10

300 Centrosome centering and decentering by microtubule network rearrangement

Gaelle Letort;Francois Nedelec;Laurent Blanchoin;Manuel Thery;

10.1101/057968 — Cell Biology — Posted on 2016-06-09

301 Comparison of 3.0 T PAC versus 1.5 T ERC MRI in Detecting Local Prostate Carcinoma.

Xin Ye;Udochukwu Oyoyo;Albert Lu;Jed Dixon;Heather Rojas;Samuel Randolph;Thomas Kelly;

10.1101/058123 — Cancer Biology — Posted on 2016-06-09

302 CellProfiler Analyst: interactive data exploration, analysis, and classification of large biological image sets

David Dao;Adam N Fraser;Jane Hung;Vebjorn Ljosa;Shantanu Singh;Anne E. Carpenter;

10.1101/057976 — Bioinformatics — Posted on 2016-06-09

303 Characterizing the Non-Normal Distribution of Flow Cytometry Measurements from Transiently Expressed Constructs in Mammalian Cells

Peter F McLean;Christina D Smolke;Marc Salit;

10.1101/057950 — Synthetic Biology — Posted on 2016-06-09

304 Binding of synGAP to PDZ Domains of PSD-95 is Regulated by Phosphorylation and Shapes the Composition of the Postsynaptic Density

Ward G Walkup;Tara L Mastro;Leslie T Schenker;Jost Vielmetter;Rebecca Hu;Ariella Iancu;Meera Reghunathan;Barry D Bannon;Mary B Kennedy;

10.1101/058016 — Neuroscience — Posted on 2016-06-09

305 Genome-wide specificity profiles of CRISPR-Cas Cpf1 nucleases in human cells

Benjamin P Kleinstiver;Shengdar Q Tsai;Michelle S Prew;Nhu T Nguyen;Moira M Welch;Jose M Lopez;Zachary R McCaw;Martin J Aryee;J. Keith Joung;

10.1101/057802 — Molecular Biology — Posted on 2016-06-09

306 Genome-wide characterization of genetic and functional dysregulation in autism spectrum disorder

Arjun Krishnan;Ran Zhang;Victoria Yao;Chandra L Theesfeld;Aaron K Wong;Alicja Tadych;Natalia Volfovsky;Alan Packer;Alex Lash;Olga G Troyanskaya;

10.1101/057828 — Genomics — Posted on 2016-06-09

307 Oligogenic Adaptation, Soft Sweeps, and Parallel Melanic Evolution in Drosophila melanogaster

Héloïse Bastide;Jeremy D Lange;Justin B Lack;Amir Yassin;John E Pool;

10.1101/058008 — Genetics — Posted on 2016-06-09

308 Genetic Mapping by Bulk Segregant Analysis in Drosophila: Experimental Design and Simulation-Based Inference

John E Pool;

10.1101/057984 — Genetics — Posted on 2016-06-09

309 Haplotype block dynamics in hybrid populations

Thijs Janzen;Arne W. Nolte;Arne Traulsen;

10.1101/058107 — Evolutionary Biology — Posted on 2016-06-09

310 Predicting Targeted Cancer Therapeutics

Aaron Wise;Murat Can Cobanoglu;

10.1101/057901 — Systems Biology — Posted on 2016-06-08

311 Initiation of Retina Regeneration By a Conserved Mechanism of Adult Neurogenesis

Mahesh B Rao;Dominic Didiano;James G Patton;

10.1101/057893 — Neuroscience — Posted on 2016-06-08

312 Can pornography be addictive? An fMRI study of men seeking treatment for problematic pornography use.

Mateusz Gola;Malgorzata Wordecha;Guillaume Sescousse;Michal Lew-Starowicz;Bartosz Kossowski;Marek Wypych;Scott Makeig;Marc Potenza;Artur Marchewka;

10.1101/057083 — Neuroscience — Posted on 2016-06-08

313 Diversity of Sericostomatidae (Trichoptera) caddisflies in the Montseny mountain range

Jan Niklas Macher;Martina Weiss;Arne Beermann;Florian Leese;

10.1101/057844 — Molecular Biology — Posted on 2016-06-14

314 Diversity of Sericostomatidae (Trichoptera) caddisflies in the Montseny mountain range

Jan Niklas Macher;Martina Weiss;Arne Beermann;Florian Leese;

10.1101/057844 — Molecular Biology — Posted on 2016-06-08

315 Synergistic elimination of bacteria by phage and the immune system

Chung Yin (Joey) Leung;Joshua S. Weitz;

10.1101/057927 — Microbiology — Posted on 2016-06-08

316 DNA sequence properties that predict susceptibility to epiallelic switching

Marco Catoni;Jayne Griffiths;Claude Becker;Nicolae Radu Zabet;Carlos Bayon;Melanie Dapp;Michal Lieberman-Lazarovich;Detlef Weigel;Jerzy Paszkowski;

10.1101/057794 — Genomics — Posted on 2016-06-08

317 NGMASTER: in silico Multi-Antigen Sequence Typing for Neisseria gonorrhoeae

Jason C Kwong;Anders Gonçalves da Silva;Kristin Dyet;Deborah A Williamson;Timothy P Stinear;Benjamin P Howden;Torsten Seemann;

10.1101/057760 — Genomics — Posted on 2016-06-09

318 NGMASTER: in silico Multi-Antigen Sequence Typing for Neisseria gonorrhoeae

Jason C Kwong;Anders Gonçalves da Silva;Kristin Dyet;Deborah A Williamson;Timothy P Stinear;Benjamin P Howden;Torsten Seemann;

10.1101/057760 — Genomics — Posted on 2016-06-08

319 Identification of Novel and Differentially Expressed MicroRNAs in Goat Enzootic Nasal Adenocarcinoma

Bin Wang;Ni Ye;Sanjie Cao;Xintian Wen;Yong Huang;Qigui Yan;

10.1101/057885 — Cancer Biology — Posted on 2016-06-08

320 Effect of X-ray irradiation on ancient DNA in sub-fossil bones - Guidelines for safe x-ray imaging.

Alexander Immel;Adeline Le Cabec;Marion Bonazzi;Alexander Herbig;Heiko Temming;Verena J. Schuenemann;Kirsten I. Bos;Frauke Langbein;Katerina Harvati;Anne Bridault;Gilbert Pion;Marie-Anne Julien;Oleksandra Krotova;Nicholas J. Conard;Susanne C. Muenzel;Dorothee G. Drucker;Bence Viola;Jean-Jacques Hublin;Paul Tafforeau;Johannes Krause;

10.1101/057786 — Biophysics — Posted on 2016-06-08

321 Topslam: Waddington Landscape Recovery for Single Cell Experiments

Max Zwiessele;Neil D Lawrence;

10.1101/057778 — Bioinformatics — Posted on 2016-06-08

322 Intraoperative biomechanics of pedicle screw loosening in the lumbar spine

Hope B Pearson;Christopher J Dobbs;Eric Grantham;James L Chappuis;Joel D Boerckel;

10.1101/057935 — Bioengineering — Posted on 2016-06-08

323 Geo-climatic gradient shapes functional trait variations in Salix eriocephala Michx.

Arun S.K. Shunmugam;Raju Y. Soolanayakanahally;Robert D. Guy;

10.1101/057745 — Plant Biology — Posted on 2016-06-08

324 Functional brain segmentation using inter-subject correlation in fMRI

Jukka-Pekka Kauppi;Juha Pajula;Jari A Niemi;Riitta Hari;Jussi Tohka;

10.1101/057620 — Neuroscience — Posted on 2016-06-07

325 Enhanced pre-frontal functional-structural networks to support behavioural deficits after traumatic brain injury

Ibai Diez;David Drijkoningen;Sebastiano Stragmalia;Paolo Bonifazi;Daniele Marinazzo;Jolien Gooijers;Stephan P. Swinnen;Jesus M. Cortes;

10.1101/057588 — Neuroscience — Posted on 2016-06-07

326 Biologically plausible learning in recurrent neural networks for flexible cognitive tasks

Thomas Miconi;

10.1101/057729 — Neuroscience — Posted on 2016-06-07

327 Global and local connectivity differences converge with gene expression in a neurodevelopmental disorder of known genetic origin

Joe Bathelt;Jessica Barnes;F Lucy Raymond;Kate Baker;Duncan E Astle;

10.1101/057687 — Neuroscience — Posted on 2016-06-07

328 Two distinct scene processing networks connecting vision and memory

Christopher Baldassano;Andre Esteva;Diane M Beck;Li Fei-Fei;

10.1101/057406 — Neuroscience — Posted on 2016-06-07

329 Magnetic Resonance Imaging Tracking of Distal Inflammatory Changes following Mild Traumatic Brain Injury (mTBI) in rats.

Seth Brian Gillham;Johnny D Figueroa;Brenda Bartnik;

10.1101/057679 — Neuroscience — Posted on 2016-06-07

330 Total RNA Sequencing reveals microbial communities in human blood and disease specific effects

Serghei Mangul;Loes M Olde Loohuis;Anil Ori;Guillaume Jospin;David Koslicki;Harry Taegyun Yang;Timothy Wu;Marco P Boks;Catherine Lomen-Hoerth;Martina Wiedau-Pazos;Rita Cantor;Willem M de Vos;Rene S Kahn;Eleazar Eskin;Roel A. Ophoff;

10.1101/057570 — Microbiology — Posted on 2016-06-07

331 The Quick and the Dead: Microbial Demography at the Yeast Thermal Limit

Colin Scott Maxwell;Paul Mitaari Magwene;

10.1101/055442 — Microbiology — Posted on 2016-06-07

332 Integrative modeling of tumor DNA methylation identifies a role for metabolism

Mahya Mehrmohamadi;Lucas Mentch;Andrew G Clark;Jason W Locasale;

10.1101/057638 — Genomics — Posted on 2016-06-07

333 Snapshots of a shrinking partner: Genome reduction in Serratia symbiotica

Alejandro Manzano-Marín;Amparo Latorre;

10.1101/057653 — Genomics — Posted on 2016-06-07

334 Uplift and erosion of genomic islands with standing genetic variation

Tyler D Hether;

10.1101/057513 — Evolutionary Biology — Posted on 2016-06-09

335 Uplift and erosion of genomic islands with standing genetic variation

Tyler D Hether;

10.1101/057513 — Evolutionary Biology — Posted on 2016-06-07

336 RADpainter and fineRADstructure: population inference from RADseq data

Milan Malinsky;Emiliano Trucchi;Daniel Lawson;Daniel Falush;

10.1101/057711 — Evolutionary Biology — Posted on 2016-06-16

337 RADpainter and fineRADstructure: population inference from RADseq data

Milan Malinsky;Emiliano Trucchi;Daniel Lawson;Daniel Falush;

10.1101/057711 — Evolutionary Biology — Posted on 2016-06-07

338 Late flowering and low synchrony with males enhance female reproductive success in the dioecious palm Chamaedorea pinnatifrons

Luis Diego Rios;Gilbert Barrantes;Alfredo Cascante-Marin;

10.1101/057547 — Ecology — Posted on 2016-06-07

339 Personally tailored cancer management based on knowledge banks of genomic and clinical data

Moritz Gerstung;Elli Papaemmanuil;Inigo Martincorena;Lars Bullinger;Verena I Gaidzik;Peter Paschka;Michael Heuser;Felicitas Thol;Niccolo Bolli;Peter Ganly;Arnold Ganser;Ultan McDermott;Konstanze Dohner;Richard F Schlenk;Hartmut Dohner;Peter J Campbell;

10.1101/057497 — Cancer Biology — Posted on 2016-06-07

340 Estimating the functional impact of INDELs in transcription factor binding sites: a genome-wide landscape

Esben Eickhardt;Thomas D Als;Jakob Grove;Anders Boerglum;Francesco Lescai;

10.1101/057604 — Bioinformatics — Posted on 2016-06-07

341 Phylogenetic and structural analyses reveal the determinants of DNA binding specificities of nucleoid-associated proteins HU and IHF

Debayan Dey;Valakunja Nagaraja;Suryanarayanarao Ramakumar;

10.1101/057489 — Bioinformatics — Posted on 2016-06-07

342 Efficient cardinality estimation for k-mers in large DNA sequencing data sets

Luiz Carlos Irber Junior;C. Titus Brown;

10.1101/056846 — Bioinformatics — Posted on 2016-06-07

343 Real-time Zika risk assessment in the United States

Lauren A Castro;Spencer J Fox;Xi Chen;Kai Liu;Steve E Bellan;Nedialko B Dimitrov;Alison P Galvani;Lauren A Meyers;

10.1101/056648 — Epidemiology — Posted on 2016-06-07

344 Decoding of generic mental representations from functional MRI data using word embeddings

Francisco Pereira;Bin Lou;Brianna Pritchett;Nancy Kanwisher;Matthew Botvinick;Evelina Fedorenko;

10.1101/057216 — Neuroscience — Posted on 2016-06-07

345 Daisy-chain gene drives for the alteration of local populations

Charleston Noble;John Min;Jason Olejarz;Joanna Buchthal;Alejandro Chavez;Andrea L Smidler;Erika A DeBenedictis;George M Church;Martin A Nowak;Kevin M Esvelt;

10.1101/057307 — Synthetic Biology — Posted on 2016-06-07

346 Evolutionary dynamics of CRISPR gene drives

Charleston Noble;Jason Olejarz;Kevin Esvelt;George Church;Martin Nowak;

10.1101/057281 — Synthetic Biology — Posted on 2016-06-07

347 Modular non-repeating codes for DNA storage

Ian Holmes;

10.1101/057448 — Synthetic Biology — Posted on 2016-06-08

348 Modular non-repeating codes for DNA storage

Ian Holmes;

10.1101/057448 — Synthetic Biology — Posted on 2016-06-07

349 Effect of cryopreservation and post-cryopreservation somatic embryogenesis on the epigenetic fidelity of cocoa (Theobroma cacao L.)

Raphael Adu-Gyamfi;Andy Wetten;Carlos Marcelino Rodriguez Lopez;

10.1101/057273 — Plant Biology — Posted on 2016-06-07

350 Brain heating induced by near infrared lasers during multi-photon microscopy

Kaspar Podgorski;Gayathri Ranganathan;

10.1101/057364 — Neuroscience — Posted on 2016-06-07

351 Simulated forward and backward self motion, based on realistic parameters, causes strong motion induced blindness

Victoria Anne Thomas;Matthew Davidson;Parisa Zakavi;Naotsugu Tsuchiya;Jeroen van Boxtel;

10.1101/057323 — Neuroscience — Posted on 2016-06-07

352 Looking for a Signal in the Noise: Revisiting Obesity and the Microbiome

Marc Sze;Patrick D Schloss;

10.1101/057331 — Microbiology — Posted on 2016-06-07

353 A dormant microbial component in the development of pre-eclampsia

Douglas B Kell;Louise Clare Kenny;

10.1101/057356 — Microbiology — Posted on 2016-06-07

354 Identification of polymorphic and off-target probe binding sites on the Illumina Infinium MethylationEPIC BeadChip

Daniel L McCartney;Rosie M Walker;Stewart W Morris;Andrew M McIntosh;David J Porteous;Kathryn L Evans;

10.1101/056937 — Genomics — Posted on 2016-06-07

355 Ultra-rare disruptive and damaging mutations influence educational attainment in the general population

Andrea Ganna;Giulio Genovese;Daniel P Howrigan;Andrea Byrnes;Mitja Kurki;Seyedeh M Zekavat;Christopher W Whelan;Robert E Handsaker;Mart Kals;Alex Bloemendal;Jonathan M Bloom;Jacqueline I Goldstein;Timothy Poterba;Cotton Seed;Michel G Nivard;Pradeep Natarajan;Reedik Magi;Diane Gage;Elise B Robinson;Andres Metspalu;Veikko Salomaa;Jaana Suvisaari;Shaun M Purcell;Pamela Sklar;Sekar Kathiresan;Mark J Daly;Steven A McCarroll;Patrick F Sullivan;Aarno Palotie;Tonu Esko;Christina Hultman;Benjamin M Neale;

10.1101/050195 — Genetics — Posted on 2016-06-07

356 Functional anatomy inspires recognition of Ediacaran Dickinsonia and similar fossils as Mollusca (Coleoidea) and precursors of Cambrian Nectocaridids and extant cuttlefish and squid

Bernard L Cohen;

10.1101/057372 — Evolutionary Biology — Posted on 2016-06-07

357 Dark diversity illuminates the dim side of conservation and restoration

Jesper Erenskjold Moeslund;Ane Kirstine Brunbjerg;Kevin Kuhlmann Clausen;Lars Dalby;Camilla Fløjgaard;Anders Juel;Jonathan Lenoir;

10.1101/057315 — Ecology — Posted on 2016-06-07

358 Harnessing Molecular Motors for Nanoscale Pulldown in Live Cells

Jonathan E Bird;Melanie Barzik;Meghan Drummond;Daniel C Sutton;Spencer M Goodman;Eva L Morozko;Stacey M Cole;Jennifer Skidmore;Diana Syam;Elizabeth A Wilson;Tracy Fitzgerald;Atteeq U Rehman;Donna M Martin;Erich T Boger;Inna A Belyantseva;Thomas B Friedman;

10.1101/053744 — Cell Biology — Posted on 2016-06-07

359 Impact of Image Gently Campaign at a Medium-Sized Teaching Hospital

Eric Liu;Yen-Ying Wu;

10.1101/057265 — Cancer Biology — Posted on 2016-06-23

360 Impact of Image Gently Campaign at a Medium-Sized Teaching Hospital

Eric Liu;Yen-Ying Wu;

10.1101/057265 — Cancer Biology — Posted on 2016-06-07

361 Stabilizing membrane domains antagonizes n-alcohol anesthesia

Ben Machta;Ellyn Gray;Mariam Nouri;Nicola L.C. McCarthy;Erin M Grey;Ann L. Miller;Nicholas J. Brooks;Sarah Veatch;

10.1101/057257 — Biophysics — Posted on 2016-06-07

362 cgCorrect: A method to correct for confounding cell-cell variation due to cell growth in single-cell transcriptomics

Thomas Blasi;Florian Buettner;Michael K Strasser;Carsten Marr;Fabian J Theis;

10.1101/057463 — Bioinformatics — Posted on 2016-06-07

363 tHapMix: simulating tumour samples through haplotype mixtures

Sergii Ivakhno;Camilla Colombo;Stephen Tanner;Philip Tedder;Stefano Berri;Anthony J. Cox;

10.1101/057414 — Bioinformatics — Posted on 2016-06-07

364 A Common Class of Transcripts with 5’-Intron Depletion, Distinct Early Coding Sequence Features, and N1-Methyladenosine Modification

Can Cenik;Hon Nian Chua;Guramrit Singh;Abdalla Akef;Michael P Snyder;Alexander F Palazzo;Melissa J Moore;Frederick P Roth;

10.1101/057455 — Bioinformatics — Posted on 2016-06-07

365 A systematic review of post-marital residence patterns in prehistoric hunter-gatherers

Devon D. Brewer;

10.1101/057059 — Evolutionary Biology — Posted on 2016-06-13

366 A systematic review of post-marital residence patterns in prehistoric hunter-gatherers

Devon D. Brewer;

10.1101/057059 — Evolutionary Biology — Posted on 2016-06-10

367 A systematic review of post-marital residence patterns in prehistoric hunter-gatherers

Devon D. Brewer;

10.1101/057059 — Evolutionary Biology — Posted on 2016-06-10

368 A systematic review of post-marital residence patterns in prehistoric hunter-gatherers

Devon D. Brewer;

10.1101/057059 — Evolutionary Biology — Posted on 2016-06-09

369 A systematic review of post-marital residence patterns in prehistoric hunter-gatherers

Devon D. Brewer;

10.1101/057059 — Evolutionary Biology — Posted on 2016-06-07

370 A systematic review of post-marital residence patterns in prehistoric hunter-gatherers

Devon D. Brewer;

10.1101/057059 — Evolutionary Biology — Posted on 2016-06-06

371 Lepbase: the Lepidopteran genome database

Richard J Challis;Sujai Kumar;Kanchon Kumar K Dasmahapatra;Chris D Jiggins;Mark Blaxter;

10.1101/056994 — Bioinformatics — Posted on 2016-06-06

372 Extending Levelt’s Propositions to perceptual multistability involving interocular grouping

Alain Jacot-Guillarmod;Yunjiao Wang;Claudia Pedroza;Haluk Ogmen;Zachary Kilpatrick;Kresimir Josic;

10.1101/057232 — Neuroscience — Posted on 2016-06-05

373 Playing Musical Chairs in Big Data to Reveal Variables Associations

Hugues Aschard;Bjarni Vilhjalmsson;Chirag Patel;David Skurnik;Jimmy Yu;Brian Wolpin;Peter Kraft;Noah Zaitlen;

10.1101/057190 — Genetics — Posted on 2016-06-05

374 Deleterious variants in Asian rice and the potential cost of domestication

Qingpo Liu;Yongfeng Zhou;Peter L. Morrell;Brandon S. Gaut;

10.1101/057224 — Evolutionary Biology — Posted on 2016-06-05

375 On the optimal response vigor and choice under variable motivational drives

Amir Dezfouli;

10.1101/057208 — Animal Behavior and Cognition — Posted on 2016-06-05

376 Fungal Induced Protein Hyperacetylation Identified by Acetylome Profiling

Justin W Walley;Zhouxin Shen;Maxwell R McReynolds;Steven P Briggs;

10.1101/057174 — Plant Biology — Posted on 2016-06-05

377 Managing Marine Ecosystems as Complex Adaptive Systems: Emergent Patterns, Critical Transitions, and Public Goods

George I Hagstrom;Simon A Levin;

10.1101/056838 — Ecology — Posted on 2016-06-07

378 Managing Marine Ecosystems as Complex Adaptive Systems: Emergent Patterns, Critical Transitions, and Public Goods

George I Hagstrom;Simon A Levin;

10.1101/056838 — Ecology — Posted on 2016-06-05

379 KIF1A/UNC-104 transports ATG-9 to regulate neurodevelopment and autophagy at synapses

Andrea K.H. Stavoe;Sarah E. Hill;Daniel A. Colón-Ramos;

10.1101/057166 — Cell Biology — Posted on 2016-06-05

380 High selfing capability and low pollinator visitation in the epiphyte Pitcairnia heterophylla (Bromeliaceae) at a Costa Rican cloud forest

Luis Diego Rios;Alfredo Cascante-Marin;

10.1101/057109 — Plant Biology — Posted on 2016-06-04

381 Large shifts among eukaryotes, bacteria, and archaea define the vertical organization of a lake sediment

Christian Wurzbacher;Andrea Fuchs;Katrin Attermeyer;Katharina Frindte;Hans-Peter Grossart;Michael Hupfer;Peter Casper;Michael T Monaghan;

10.1101/057117 — Ecology — Posted on 2016-06-16

382 Large shifts among eukaryotes, bacteria, and archaea define the vertical organization of a lake sediment

Christian Wurzbacher;Andrea Fuchs;Katrin Attermeyer;Katharina Frindte;Hans-Peter Grossart;Michael Hupfer;Peter Casper;Michael T Monaghan;

10.1101/057117 — Ecology — Posted on 2016-06-06

383 Large shifts among eukaryotes, bacteria, and archaea define the vertical organization of a lake sediment

Christian Wurzbacher;Andrea Fuchs;Katrin Attermeyer;Katharina Frindte;Hans-Peter Grossart;Michael Hupfer;Peter Casper;Michael T Monaghan;

10.1101/057117 — Ecology — Posted on 2016-06-04

384 The PAS domain-containing protein HeuR regulates heme uptake in Campylobacter jejuni

Jeremiah Johnson;Jennifer Gaddy;Victor DiRita;

10.1101/057042 — Microbiology — Posted on 2016-06-03

385 Within-patient HIV mutation frequencies reveal fitness costs of CpG dinucleotides, drastic amino acid changes and G→A mutations

Marion Hartl;Kristof Theys;Alison Feder;Maoz Gelbart;Adi Stern;Pleuni S Pennings;

10.1101/057026 — Evolutionary Biology — Posted on 2016-06-03

386 A Facilitated Diffusion Mechanism Establishes the Drosophila Dorsal Gradient

Sophia N Carrell;MIchael D O'Connell;Amy E Allen;Stephanie M Smith;Gregory Reeves;

10.1101/057091 — Developmental Biology — Posted on 2016-06-03

387 Female-female aggression in a sexual/unisexual species complex over resources

Amber Makowicz;Tana Moore;Ingo Schlupp;

10.1101/057018 — Animal Behavior and Cognition — Posted on 2016-06-03

388 First evidence of a menstruating rodent: the spiny mouse (Acomys cahirinus)

Nadia Bellofiore;Stacey J Ellery;Jared Mamrot;David W Walker;Peter Temple-Smith;Hayley Dickinson;

10.1101/056895 — Physiology — Posted on 2016-06-03

389 Stratifying risk of prostate cancer recurrence following external beam radiation therapy: Comparing prostate MRI with prostate biopsy pathology.

William Millard;Jason Slater;Samuel Randolph;Thomas Kelly;David Bush;

10.1101/056879 — Pathology — Posted on 2016-06-03

390 Acoustic-based model estimation of snapping shrimp populations and the effects of a sponge die-off

Jack Butler;Mark Butler;Holly Gaff;

10.1101/056986 — Ecology — Posted on 2016-06-03

391 High habitat-specificity in fungal communities of an oligo-mesotrophic, temperate lake

Christian Wurzbacher;Norman Warthmann;Elizabeth Bourne;Katrin Attermeyer;Martin Allgaier;Jeff R Powell;Harald Detering;Susan Mbedi;Hans-Peter Grossart;Michael T Monaghan;

10.1101/056929 — Ecology — Posted on 2016-06-03

392 Cancer cells with alternative lengthening of telomeres do not display a general hypersensitivity to ATR inhibition

Katharina I. Deeg;Inn Chung;Caroline Bauer;Karsten Rippe;

10.1101/053280 — Cancer Biology — Posted on 2016-06-04

393 Cancer cells with alternative lengthening of telomeres do not display a general hypersensitivity to ATR inhibition

Katharina I. Deeg;Inn Chung;Caroline Bauer;Karsten Rippe;

10.1101/053280 — Cancer Biology — Posted on 2016-06-03

394 Active modules for multilayer weighted gene co-expression networks: a continuous optimization approach

Dong Li;Shan He;Zhisong Pan;Guyu Hu;

10.1101/056952 — Bioinformatics — Posted on 2016-06-03

395 Phased Diploid Genome Assembly with Single Molecule Real-Time Sequencing

Chen-Shan Chin;Paul Peluso;Fritz J. Sedlazeck;Maria Nattestad;Gregory T. Concepcion;Alicia Clum;Christopher Dunn;Ronan O'Malley;Rosa Figueroa-Balderas;Abraham Morales-Cruz;Grant R. Cramer;Massimo Delledonne;Chongyuan Luo;Joseph R. Ecker;Dario Cantu;David R. Rank;Michael C. Schatz;

10.1101/056887 — Bioinformatics — Posted on 2016-06-03

396 Cryptic diversity and multiple origins of the widespread mayfly species group Baetis rhodani (Ephemeroptera: Baetidae) on northwestern Mediterranean islands

Roberta Bisconti;Daniele Canestrelli;Roberta Tenchini;Carlo Belfiore;Andrea Buffagni;Giuseppe Nascetti;

10.1101/056556 — Evolutionary Biology — Posted on 2016-06-03

397 Cryptic diversity and multiple origins of the widespread mayfly species group Baetis rhodani (Ephemeroptera: Baetidae) on northwestern Mediterranean islands

Roberta Bisconti;Daniele Canestrelli;Roberta Tenchini;Carlo Belfiore;Andrea Buffagni;Giuseppe Nascetti;

10.1101/056556 — Evolutionary Biology — Posted on 2016-06-03

398 Controlling noise in the timing of intracellular events: A first-passage time approach

Khem Raj Ghusinga;John J Dennehy;Abhyudai Singh;

10.1101/056945 — Biophysics — Posted on 2016-06-05

399 Controlling noise in the timing of intracellular events: A first-passage time approach

Khem Raj Ghusinga;John J Dennehy;Abhyudai Singh;

10.1101/056945 — Biophysics — Posted on 2016-06-03

400 Predicting future learning from baseline network architecture

Marcelo Mattar;Nicholas F Wymbs;Andrew S Bock;Geoffrey K Aguirre;Scott T Grafton;Danielle S Bassett;

10.1101/056861 — Neuroscience — Posted on 2016-06-03

401 The Human Octopus: controlling supernumerary hands with the help of virtual reality

Sander Kulu;Madis Vasser;Raul Vicente Zafra;Jaan Aru;

10.1101/056812 — Neuroscience — Posted on 2016-06-04

402 The Human Octopus: controlling supernumerary hands with the help of virtual reality

Sander Kulu;Madis Vasser;Raul Vicente Zafra;Jaan Aru;

10.1101/056812 — Neuroscience — Posted on 2016-06-03

403 The evolutionary basis of premature migration in Pacific salmon highlights the utility of genomics for informing conservation

Daniel J Prince;Sean M O'Rourke;Tasha Q Thompson;Omar A Ali;Martha Arciniega;Hannah S Lyman;Ismail K Saglam;Anthony J Clemento;Thomas J Hotaling;Andrew P Kinziger;Adrian P Spidle;John Carlos Garza;Devon E Pearse;Michael R Miller;

10.1101/056853 — Genetics — Posted on 2016-06-03

404 Identification of microsporidia host-exposed proteins reveals a repertoire of large paralogous gene families and rapidly evolving proteins

Aaron W Reinke;Keir M Balla;Eric J Bennett;Emily R Troemel;

10.1101/056788 — Evolutionary Biology — Posted on 2016-06-03

405 Spatial capture-recapture with partial identity: an application to camera traps

Ben Augustine;J. Andrew Royle;Marcella Kelly;Christopher Satter;Robert Alonso;Erin Boydston;Kevin Crooks;

10.1101/056804 — Ecology — Posted on 2016-06-03

406 Differential modulation of the cellular and humoral immune responses in Drosophila is mediated by the endosomal ARF1-Asrij axis

Rohan J Khadilkar;Chetan D.R;Arghyashree RoyChowdhury;Srivathsa S Magadi;Vani Kulkarni;Maneesha S Inamdar;

10.1101/056796 — Immunology — Posted on 2016-06-02

407 High-throughput Screening and CRISPR-Cas9 Modeling of Causal Lipid-associated Expression Quantitative Trait Locus Variants

Avanthi Raghavan;Xiao Wang;Peter Rogov;Li Wang;Xiaolan Zhang;Tarjei S Mikkelsen;Kiran Musunuru;

10.1101/056820 — Genomics — Posted on 2016-06-02

408 Contact, travel, and transmission: The impact of winter holidays on influenza dynamics in the United States

Anne Ewing;Elizabeth C Lee;Shweta Bansal;

10.1101/055871 — Epidemiology — Posted on 2016-06-02

409 Epigenetic activation of the prostaglandin receptor EP4 promotes resistance to endocrine therapy for breast cancer

Jeff F Hiken;James I McDonald;Keith F Decker;Cesar Sanchez;Jeremy Hoog;Nathan D VanderKraats;Kyle L Jung;Margaret Akinhanmi;Matthew J Ellis;John R Edwards;

10.1101/056770 — Cancer Biology — Posted on 2016-06-02

410 Stem Cell Plasticity and Niche Dynamics in Cancer Progression

Noemi Picco;Robert Gatenby;Alexander Anderson;

10.1101/056762 — Cancer Biology — Posted on 2016-06-02

411 Functional connectivity in neuromuscular system underlying bimanual muscle synergies

Ingmar E. J. de Vries;Andreas Daffertshofer;Dick F. Stegeman;Tjeerd W. Boonstra;

10.1101/056671 — Neuroscience — Posted on 2016-06-02

412 Overlap of movement planning and movement execution reduces reaction time by up to 100ms.

Jean-Jacques Orban de Xivry;Valery Legrain;Philippe LEFEVRE;

10.1101/039842 — Neuroscience — Posted on 2016-06-02

413 The human thalamus is an integrative hub for functional brain networks

Kai Hwang;Maxwell A. Bertolero;William Liu;Mark D'Esposito;

10.1101/056630 — Neuroscience — Posted on 2016-06-02

414 Developmental Transcriptional Model describing regulated genes, QTLs and pathways during the primary and secondary cell walls of Pima fibers

Magdy Alabady;Bulak Arpat;

10.1101/056127 — Genomics — Posted on 2016-06-06

415 Developmental Transcriptional Model describing regulated genes, QTLs and pathways during the primary and secondary cell walls of Pima fibers

Magdy Alabady;Bulak Arpat;

10.1101/056127 — Genomics — Posted on 2016-06-02

416 Developmental Transcriptional Model describing regulated genes, QTLs and pathways during the primary and secondary cell walls of Pima fibers

Magdy Alabady;Bulak Arpat;

10.1101/056127 — Genomics — Posted on 2016-06-02

417 Maternal Genetic Ancestry and Legacy of 10th Century AD Hungarians

Aranka Csösz;Anna Szecsenyi-Nagy;Veronika Csakyova;Peter Lango;Viktoria Bodis;Kitti Köhler;Gyongyver Tomory;Melinda Nagy;Balazs Gusztav Mende;

10.1101/056655 — Genetics — Posted on 2016-06-02

418 Assessing sex-specific selection against deleterious alleles: males don’t pay for sex

Zofia M Prokop;Monika A Prus;Tomasz S Gaczorek;Karolina Markot;Joanna K Palka;Magdalena Mendrok;

10.1101/056663 — Evolutionary Biology — Posted on 2016-06-02

419 PRDM9 forms a multiprotein complex tethering recombination hotspots to the chromosomal axis

Emil D Parvanov;Hui Tian;Timothy Billings;Ruth L Saxl;Catrina Spruce;Rakesh Aithal;Lumir Krejci;Kenneth Paigen;Petko M Petkov;

10.1101/056713 — Cell Biology — Posted on 2016-06-02

420 Fast and Robust Segmentation of Copy Number Profiles Using Multi-Scale Edge Detection

Ivo W Kwee;Andrea Rinaldi;Cassio Polpo de Campos;Francesco Bertoni;

10.1101/056705 — Bioinformatics — Posted on 2016-06-02

421 Proteobacteria drive significant functional variability in the human gut microbiome

Patrick H Bradley;Katherine S Pollard;

10.1101/056614 — Bioinformatics — Posted on 2016-06-02

422 Repeated range expansion and niche shift in a volcanic hotspot archipelago: radiation of Hawaiian Euphorbia (Euphorbiaceae)

Ya Yang;Clifford Morden;Margaret Sporck-Koehler;Lawren Sack;Paul Berry;

10.1101/056580 — Evolutionary Biology — Posted on 2016-06-02

423 Antagonistic roles of Polycomb repression and Notch signaling in the maintenance of somatic cell fate in C. elegans.

Ringo Pueschel;Francesca Coraggio;Alisha Marti;Peter Meister;

10.1101/055137 — Developmental Biology — Posted on 2016-06-02

424 Statistical inference of protein structural alignments using information and compression

James H Collier;Lloyd Allison;Arthur M Lesk;Peter J Stuckey;Maria Garcia de la Banda;Arun S Konagurthu;

10.1101/056598 — Bioinformatics — Posted on 2016-06-02

425 Digital dissection of arsenate reductase enzyme from an arsenic hyperccumulating fern Pteris vittata

Zarrin Basharat;Deeba Noreen Baig;Azra Yasmin;

10.1101/056036 — Bioinformatics — Posted on 2016-06-01

Darren Price;Lorraine Tyler;Rafael Neto Henriques;Karen Campbell;Nitin Williams;Matthias Treder;Jason Taylor;Cam-CAN;Richard Henson;

10.1101/056440 — Neuroscience — Posted on 2016-06-01

427 Anticorrelation between default and dorsal attention networks varies across default subsystems and cognitive states

Matthew L Dixon;Jessica R Andrews-Hanna;R. Nathan Spreng;Zachary C Irving;Kalina Christoff;

10.1101/056424 — Neuroscience — Posted on 2016-06-02

428 Anticorrelation between default and dorsal attention networks varies across default subsystems and cognitive states

Matthew L Dixon;Jessica R Andrews-Hanna;R. Nathan Spreng;Zachary C Irving;Kalina Christoff;

10.1101/056424 — Neuroscience — Posted on 2016-06-01

429 Breaking bud: probing the scalability limits of phylogenetic network inference methods

Hussein A Hejase;Kevin J Liu;

10.1101/056572 — Bioinformatics — Posted on 2016-06-01

430 Reproducible Computational Workflows with Continuous Analysis

Brett K Beaulieu-Jones;Casey S Greene;

10.1101/056473 — Bioinformatics — Posted on 2016-06-01

431 The Wnt segment polarity pathway and p24 protein TMED2 interact via a lectin- and decoy-type mechanism

Klaus Fiedler;

10.1101/056531 — Bioinformatics — Posted on 2016-06-01

432 Structure of complement C3(H2O) revealed by quantitative cross-linking/mass spectrometry and modeling

Zhuo Angel Chen;Riccardo Pellarin;Lutz Fischer;Andrej Sali;Michael Nilges;Paul N Barlow;Juri Rappsilber;

10.1101/056457 — Biochemistry — Posted on 2016-06-01

433 iSUMO - integrative prediction of functionally relevant SUMOylated proteins

Xiaotong Yao;Rebecca Bish;Christine Vogel;

10.1101/056564 — Systems Biology — Posted on 2016-06-01

434 Massively parallel whole-organism lineage tracing using CRISPR/Cas9 induced genetic scars

Jan Philipp Junker;Bastiaan Spanjaard;Josi Peterson-Maduro;Anna Alemany;Bo Hu;Maria Florescu;Alexander van Oudenaarden;

10.1101/056499 — Systems Biology — Posted on 2016-06-01

435 Transcriptional activity of TRF2 is telomere length dependent

Ananda Kishore Mukherjee;Shalu Sharma;Parashar Dhapola;Dhurjhoti Saha;Tabish Hussain;Sumitabho Deb Roy;Gunjan Purohit;Anirban Kar;Ankita Singh;Suman Sengupta;Vivek Srivastava;Manish Kumar;Sagar Sengupta;Shantanu Chowdhury;

10.1101/056481 — Molecular Biology — Posted on 2016-06-03

436 Transcriptional activity of TRF2 is telomere length dependent

10.1101/056481 — Molecular Biology — Posted on 2016-06-01

437 Rapid, one-step generation of biallelic conditional gene knockouts

Bon-Kyoung Koo;Amanda Andersson-Rolf;Roxana C. Mustata;Alessandra Merenda;Sajith Perera;Tiago Grego;Jihoon Kim;Katie Andrews;Juergen Fink;William C. Skarnes;

10.1101/056549 — Genetics — Posted on 2016-06-01

438 Budding yeast chromatin is dispersed in a crowded nucleoplasm in vivo

Chen Chen;Jian Shi;Hong Hwa Lim;Sachiko Tamura;Kazuhiro Maeshima;Uttam Surana;Lu Gan;

10.1101/056465 — Cell Biology — Posted on 2016-06-01

439 Genotyping of Inversions and Tandem Duplications

Jana Ebler;Alexander Schoenhuth;Tobias Marschall;

10.1101/056432 — Bioinformatics — Posted on 2016-06-01

440 FGIN-1-27, an agonist at translocator protein 18 kDa (TSPO), has anti-anxiety and anti-panic effects in non-mammalian models

Caio Maximino;

10.1101/056507 — Pharmacology and Toxicology — Posted on 2016-06-01

441 Dnmts mediate neural processing after odor learning in the honeybee

Stephanie D Biergans;Charles Claudianos;Judith Reinhard;C. Giovanni Galizia;

10.1101/056333 — Neuroscience — Posted on 2016-06-01

442 Parallel, independent reversions to an embryonic expression phenotype in multiple types of cancer.

Corey M. Hudson;Gavin C. Conant;

10.1101/056523 — Cancer Biology — Posted on 2016-06-01

443 A Novel Algorithm for the Maximal Fit Problem in Boolean Networks

Guy Karlebach;

10.1101/056358 — Systems Biology — Posted on 2016-06-20

444 Game theoretic methods in population dynamics

David Liao;

10.1101/056341 — Cancer Biology — Posted on 2016-06-01

445 Transplanting as a means to enhance crop security of fodder beet

Edith N Khaembah;Warrick R Nelson;

10.1101/056408 — Plant Biology — Posted on 2016-06-19

446 Significant competitive dominance in mid-latitude European plant communities

Jose A Capitan;Sara Cuenda;Alejandro Ordonez;David Alonso;

10.1101/056309 — Ecology — Posted on 2016-06-23

447 A large field of view two-photon mesoscope with subcellular resolution for in vivo imaging

Nicholas James Sofroniew;Daniel Flickinger;Jonathan King;Karel Svoboda;

10.1101/055947 — Neuroscience — Posted on 2016-06-01

448 IPC - Isoelectric Point Calculator

Lukasz P Kozlowski;

10.1101/049841 — Bioinformatics — Posted on 2016-06-10

449 Aequatus: An open-source homology browser

Anil S. Thanki;Sarah Ayling;Javier Herrero;Robert P. Davey;

10.1101/055632 — Bioinformatics — Posted on 2016-06-01

450 Report of Partial findings from the National Toxicology Program Carcinogenesis Studies of Cell Phone Radiofrequency Radiation in Hsd: Sprague Dawley® SD rats (Whole Body Exposure)

Michael Wyde;Mark Cesta;Chad Blystone;Susan Elmore;Paul Foster;Michelle Hooth;Grace Kissling;David Malarkey;Robert Sills;Matthew Stout;Nigel Walker;Kristine Witt;Mary Wolfe;John Bucher;

10.1101/055699 — Cancer Biology — Posted on 2016-06-23

451 A reference dataset of 5.4 million phased human variants validated by genetic inheritance from sequencing a three-generation 17-member pedigree

Michael A Eberle;Epameinondas Fritzilas;Peter Krusche;Morten Kallberg;Benjamin L Moore;Mitchell A Bekritsky;Zamin Iqbal;Han-Yu Chuang;Sean J Humphray;Aaron L Halpern;Semyon Kruglyak;Elliott H Margulies;Gil McVean;David R Bentley;

10.1101/055541 — Bioinformatics — Posted on 2016-06-06

452 Specialization of a polyphenism switch gene following serial duplications in Pristionchus nematodes

Erik J Ragsdale;Nicholas A Ivers;

10.1101/055384 — Evolutionary Biology — Posted on 2016-06-08

453 Metagenomic covariation along densely sampled environmental gradients in the Red Sea

Luke R Thompson;Gareth J Williams;Mohamed F Haroon;Ahmed Shibl;Peter Larsen;Joshua Shorenstein;Rob Knight;Ulrich Stingl;

10.1101/055012 — Microbiology — Posted on 2016-06-08

454 Predicting Peptide-MHC Binding Affinities With Imputed Training Data

Alex Rubinsteyn;Timothy O'Donnell;Nandita Damaraju;Jeffrey Hammerbacher;

10.1101/054775 — Immunology — Posted on 2016-06-07

455 Tellurium: A Python Based Modeling and Reproducibility Platform for Systems Biology

Kiri Choi;Jesse Kyle Medley;Carroline Cannistra;Matthias Konig;Lucian Smith;Kaylene Stocking;Herbert M Sauro;

10.1101/054601 — Systems Biology — Posted on 2016-06-02

456 MPAthic: quantitative modeling of sequence-function relationships for massively parallel assays

William T. Ireland;Justin B. Kinney;

10.1101/054676 — Bioinformatics — Posted on 2016-06-20

457 Kinematic analysis of cell lineage reveals coherent and robust mechanical deformation patterns in zebrafish gastrulation

David Pastor-Escuredo;Benoit Lombardot;Thierry Savy;Adeline Boyreau;Jose M. Goicolea;Andres Santos;Paul Bourgine;Juan C. del Alamo;Nadine Peyrieras;Maria J. Ledesma-Carbayo;

10.1101/054353 — Systems Biology — Posted on 2016-06-02

458 Long shelf-life streptavidin support-films suitable for electron microscopy of biological macromolecules

Bong-Gyoon Han;Zoe Watson;Hannah Kang;Arto Pulk;Kenneth Downing;Jamie Cate;Robert Glaeser;

10.1101/054452 — Biophysics — Posted on 2016-06-12

459 DeepCyTOF: Automated Cell Classification of Mass Cytometry Data by Deep Learning and Domain Adaptation

Huamin Li;Uri Shaham;Yi Yao;Ruth Montgomery;Yuval Kluger;

10.1101/054411 — Bioinformatics — Posted on 2016-06-14

460 Reading out olfactory receptors: feedforward circuits detect odors in mixtures without demixing

Alexander Mathis;Dan Rokni;Vikrant Kapoor;Matthias Bethge;Venkatesh N Murthy;

10.1101/054247 — Neuroscience — Posted on 2016-06-06

461 Excess of deleterious mutations around HLA genes reveals evolutionary cost of balancing selection

Tobias L Lenz;Victor Spirin;Daniel M Jordan;Shamil R Sunyaev;

10.1101/053793 — Evolutionary Biology — Posted on 2016-06-15

462 MODA: MOdule Differential Analysis for weighted gene co-expression network

Dong Li;James Brown;Luisa Orsini;Zhisong Pan;Guyu Hu;Shan He;

10.1101/053496 — Bioinformatics — Posted on 2016-06-03

463 Fractional Dosing of Yellow Fever Vaccine to Extend Supply: A Modeling Study

Joseph T. Wu;Corey M. Peak;Gabriel M. Leung;Marc Lipsitch;

10.1101/053421 — Epidemiology — Posted on 2016-06-16

464 Parasites and invasions: changes in gastrointestinal helminth assemblages in invasive and native rodents in Senegal.

Christophe Diagne;Alexis Ribas;Nathalie Charbonnel;Ambroise Dalecky;Caroline Tatard;Philippe Gauthier;Voitto Haukisalmi;Odile Fossati-Gaschignard;Khalilou Ba;Mamadou Kane;Youssoupha Niang;Mamoudou Diallo;Aliou Sow;Sylvain Piry;Mbacke Sembene;Carine Brouat;

10.1101/053082 — Ecology — Posted on 2016-06-17

465 Corticosteroid and progesterone transactivation of mineralocorticoid receptors from Amur sturgeon and tropical gar

Akira Sugimoto;Kaori Oka;Rui Sato;Shinji Adachi;Michael E. Baker;Yoshinao Katsu;

10.1101/053199 — Evolutionary Biology — Posted on 2016-06-19

466 Proteasome dysfunction triggers activation of SKN-1A/Nrf1 by the aspartic protease DDI-1.

Nicolas J Lehrbach;Gary Ruvkun;

10.1101/052936 — Genetics — Posted on 2016-06-05

467 Personal Pharmacogenetic Testing Enhances Pharmacy Student Knowledge and Attitude Towards Precision Medicine

Dalga Surofchy;Sam Oh;Joshua Galanter;Pin Xiang;Megan Li;Su Guo;Tejal Desai;Bernard Joseph Guglielmo;Kathy Giacomini;Janel Long-Boyle;Alan HB Wu;Esteban G Burchard;

10.1101/052043 — Scientific Communication and Education — Posted on 2016-06-30

468 Visualization and analysis of single-cell RNA-seq data by kernel-based similarity learning

Bo Wang;Junjie Zhu;Emma Pierson;Daniele Ramazzotti;Serafim Batzoglou;

10.1101/052225 — Bioinformatics — Posted on 2016-06-09

469 Higher fungal diversity is correlated with lower CO2 emissions from dead wood in a natural forest

Yahan Yang;Douglas A. Schaefer;Weijie Liu;Viorel D. Popescu;Chenxue Yang;Xiaoyang Wang;Chunying Wu;Douglas W. Yu;

10.1101/051235 — Ecology — Posted on 2016-06-13

470 Pyricularia graminis-tritici sp. nov., a new Pyricularia species causing wheat blast

V.L. Castroagudin;S.I. Moreira;D.A.S. Pereira;S.S. Moreira;P.C. Brunner;J.L.N. Maciel;P.W. Crous;Bruce McDonald;E. Alves;P.C. Ceresini;

10.1101/051151 — Evolutionary Biology — Posted on 2016-06-12

471 Evolutionary mysteries in meiosis.

Thomas Lenormand;Jan Engelstädter;Susan E Johnston;Erik Wijnker;Christoph R Haag;

10.1101/050831 — Evolutionary Biology — Posted on 2016-06-29

472 Pan-retinal characterisation of Light Responses from Ganglion Cells in the Developing Mouse Retina

Gerrit Hilgen;Sahar Pirmoradian;Daniela Pamplona;Pierre Kornprobst;Bruno Cessac;Matthias H Hennig;Evelyne Sernagor;

10.1101/050393 — Neuroscience — Posted on 2016-06-09

473 Longitudinal assessment of sputum microbiome by sequencing of the 16S rRNA gene in non-CF bronchiectasis patients

Michael J Cox;Elena M Turek;Catherine Hennessy;Ghazala K Mirza;Phillip L James;Meg Coleman;Andrew Jones;Robert Wilson;Diana Bilton;William O C M Cookson;Miriam F Moffatt;Michael Loebinger;

10.1101/050237 — Microbiology — Posted on 2016-06-14

474 The Pseudomonas aeruginosa PSL polysaccharide is a social but non-cheatable trait in biofilms

Yasuhiko Irie;Aled Roberts;Kasper N Kragh;Vernita D Gordon;Jamie Hutchison;Rosalind J Allen;Gavin Melaugh;Thomas Bjarnsholt;Stuart A West;Stephen P Diggle;

10.1101/049783 — Microbiology — Posted on 2016-06-23

475 The Pseudomonas aeruginosa PSL polysaccharide is a social but non-cheatable trait in biofilms

Yasuhiko Irie;Aled Roberts;Kasper N Kragh;Vernita D Gordon;Jamie Hutchison;Rosalind J Allen;Gavin Melaugh;Thomas Bjarnsholt;Stuart A West;Stephen P Diggle;

10.1101/049783 — Microbiology — Posted on 2016-06-08

476 CD44 Controls Endothelial Proliferation and Functions as Endogenous Inhibitor of Angiogenesis

Anne Pink;Marianna Skolnaja;Taavi Paell;Andres Valkna;

10.1101/049494 — Cell Biology — Posted on 2016-06-27

477 Robust generation of transgenic mice by hypotonic shock mediated transgene delivery in testicular germ cells

Abul Usmani;Nirmalya Ganguli;Subodh Jain;Nilanjana Ganguli;Rajesh Kumar Sarkar;Mayank Choubey;Hironmoy Sarkar;Subeer Majumdar;

10.1101/049239 — Genomics — Posted on 2016-06-16

478 Heat*seq: an interactive web tool for high-throughput sequencing experiment comparison with public data

Guillaume Devailly;Anna Mantsoki;Anagha Joshi;

10.1101/049254 — Bioinformatics — Posted on 2016-06-15

479 A statistical guide to the design of deep mutational scanning experiments

Sebastian Matuszewski;Marcel Eckhardt Hildebrandt;Ana-Hermina Ghenu;Jeffrey D. Jensen;Claudia Bank;

10.1101/048892 — Evolutionary Biology — Posted on 2016-06-29

480 An experimental evaluation of drug-induced mutational meltdown as an antiviral treatment strategy

Claudia Bank;Nicholas Renzette;Ping Liu;Sebastian Matuszewski;Hyunjin Shim;Matthieu Foll;Daniel N.A. Bolon;Konstantin B. Zeldovich;Timothy F. Kowalik;Robert W. Finberg;Jennifer P. Wang;Jeffrey D. Jensen;

10.1101/048934 — Evolutionary Biology — Posted on 2016-06-02

481 On the importance of skewed offspring distributions and background selection in viral population genetics

Kristen K. Irwin;Stefan Laurent;Sebastian Matuszewski;Severine Vuilleumier;Louise Ormond;Hyunjin Shim;Claudia Bank;Jeffrey D. Jensen;

10.1101/048975 — Evolutionary Biology — Posted on 2016-06-24

482 A comparative analysis of 5-azacytidine and zebularine induced DNA demethylation

Patrick T Griffin;Chad E Niederhuth;Robert J. Schmitz;

10.1101/048884 — Genomics — Posted on 2016-06-13

483 Salt Effects on the Thermodynamics of a Frameshifting RNA Pseudoknot under Tension

Naoto Hori;Natalia A. Denesyuk;Dave Thirumalai;

10.1101/048801 — Biophysics — Posted on 2016-06-21

484 Sharing brain mapping statistical results with the neuroimaging data model

Camille Maumet;Tibor Auer;Alexander Bowring;Gang Chen;Samir Das;Guillaume Flandin;Satrajit Ghosh;Tristan Glatard;Krzysztof J. Gorgolewski;Karl G. Helmer;Mark Jenkinson;David Keator;Nolan Nolan Nichols;Jean-Baptiste Poline;Richard Reynolds;Vanessa Sochat;Jessica Turner;Thomas E. Nichols;

10.1101/041798 — Neuroscience — Posted on 2016-06-14

485 Magnetite biomineralization in Magnetospirillum magneticum is regulated by a switch-like behavior in the HtrA protease MamE

David M Hershey;Patrick J Browne;Anthony T Iavarone;Joan Teyra;Eun H Lee;Sachdev S Sidhu;Arash Komeili;

10.1101/047555 — Biochemistry — Posted on 2016-06-07

486 Petri Net-Based Graphical and Computational Modelling of Biological Systems

Alessandra Livigni;Laura O'Hara;Marta E Polak;Tim Angus;Lee B Smith;Tom C Freeman;

10.1101/047043 — Systems Biology — Posted on 2016-06-22

487 Is voice a marker for autism spectrum disorder? A systematic review and meta-analysis

Riccardo Fusaroli;Anna Lambrechts;Dan Bang;Dermot M Bowler;Sebastian B Gaigg;

10.1101/046565 — Bioinformatics — Posted on 2016-06-24

488 Is voice a marker for autism spectrum disorder? A systematic review and meta-analysis

Riccardo Fusaroli;Anna Lambrechts;Dan Bang;Dermot M Bowler;Sebastian B Gaigg;

10.1101/046565 — Bioinformatics — Posted on 2016-06-01

489 Lethal Gene Drive Selects Inbreeding

James J. Bull;

10.1101/046847 — Evolutionary Biology — Posted on 2016-06-03

490 Case-control association mapping without cases

Jimmy Z Liu;Yaniv Erlich;Joseph K Pickrell;

10.1101/045831 — Genetics — Posted on 2016-06-17

491 On the Origin and Evolutionary Consequences of Gene Body DNA Methylation

Adam J Bewick;Lexiang Ji;Chad E Niederhuth;Eva-Maria Willing;Brigitte T Hofmeister;Xiuling Shi;Li Wang;Zefu Lu;Nicholas A Rohr;Benjamin Hartwig;Christiane Kiefer;Roger B Deal;Jeremy Schmutz;Jane Grimwood;Hume Stroud;Steve E Jacobsen;Korbinian Schneeberger;Xiaoyu Zhang;Robert J Schmitz;

10.1101/045542 — Plant Biology — Posted on 2016-06-09

492 Empirical modelling of trait selection by partitioning selection into direct selection and selection that is mediated by interspecific interactions

Christian Damgaard;

10.1101/045583 — Ecology — Posted on 2016-06-10

493 fluff: exploratory analysis and visualization of high-throughput sequencing data

Georgios Georgiou;Simon J van Heeringen;

10.1101/045526 — Bioinformatics — Posted on 2016-06-06

494 The genetic basis of host choice and resting behavior in the major African malaria vector, Anopheles arabiensis

Bradley J Main;Yoosook Lee;Heather Ferguson;Anicet Kihonda;Nicodem Govella;Katharina S Kreppel;Travis C Collier;Anthony J Cornel;Eleazar Eskin;Eun Yong Kang;Catelyn C Nieman;Allison M Weakley;Gregory Lanzaro;

10.1101/044701 — Genetics — Posted on 2016-06-07

495 Genome-wide association study of 40,000 individuals identifies two novel loci associated with bipolar disorder

Liping Hou;Sarah E Bergen;Nirmala Akula;Jie Song;Christina M Hultman;Mikael Landen;Mazda Adli;Martin Alda;Raffaella Ardau;Barbara Arias;Jean-Michel Aubry;Lena Backlund;Judith A Badner;Thomas B Barrett;Michael Bauer;Bernhard T Baune;Frank Bellivier;Antonio Benabarre;Susanne Bengesser;Wade H Berrettini;Abesh Kumar Bhattacharjee;Joanna M Biernacka;Armin Birner;Cinnamon S Bloss;Clara Brichant-Petitjean;Elise T Bui;William Byerley;Pablo Cervantes;Caterina Chillotti;Sven Cichon;Francesc Colom;William Coryell;David W Craig;Cristiana Cruceanu;Piotr M Czerski;Tony Davis;Alexandre Dayer;Franziska Degenh

10.1101/044412 — Genetics — Posted on 2016-06-24

496 Fossil calibrations for the arthropod Tree of Life

Joanna M Wolfe;Allison C Daley;David A Legg;Gregory D Edgecombe;

10.1101/044859 — Paleontology — Posted on 2016-06-10

497 Transposable Element Evolution in the Allotetraploid Capsella bursa-pastoris

J Arvid Agren;Hui-Run Huang;Stephen I Wright;

10.1101/042325 — Evolutionary Biology — Posted on 2016-06-20

498 A watershed model of individual differences in fluid intelligence

Rogier A Kievit;Simon W Davis;John D Griffiths;Marta M Correia;Cam-CAN;Richard N A Henson;

10.1101/041368 — Neuroscience — Posted on 2016-06-23

499 A watershed model of individual differences in fluid intelligence

Rogier A Kievit;Simon W Davis;John D Griffiths;Marta M Correia;Cam-CAN;Richard N A Henson;

10.1101/041368 — Neuroscience — Posted on 2016-06-23

500 Recurrent selection explains parallel evolution of genomic regions of high relative but low absolute differentiation in greenish warblers

Darren E. Irwin;Miguel Alcaide;Kira E. Delmore;Jessica H. Irwin;Gregory L. Owens;

10.1101/041467 — Genomics — Posted on 2016-06-25

501 Effectors and potential targets selectively upregulated in human KRAS mutant lung adenocarcinomas

Jinyu Li;Raffaella Sordella;Scott Powers;

10.1101/041137 — Cancer Biology — Posted on 2016-06-04

502 Eco-evolutionary buffering: rapid evolution facilitates regional coexistence of species engaged in local priority effects

Meike J. Wittmann;Tadashi Fukami;

10.1101/040659 — Ecology — Posted on 2016-06-03

503 Plant diversity accurately predicts insect diversity in two tropical landscapes

Kai Zhang;Siliang Lin;Yinqiu Ji;Chenxue Yang;Xiaoyang Wang;Chunyan Yang;H. Wang;Haisheng Jiang;Rhett Harrison;Douglas W. Yu;

10.1101/040105 — Ecology — Posted on 2016-06-13

504 Tunable bet hedging in yeast responses to osmotic stress

Yoshikazu Hirate;Samuel Bottani;Wyming Lee Pang;Suzannah Rutherford;

10.1101/039982 — Evolutionary Biology — Posted on 2016-06-13

505 16S rRNA amplicon sequencing for epidemiological surveys of bacteria in wildlife: the importance of cleaning post-sequencing data before estimating positivity, prevalence and co-infection

Maxime Galan;Maria Razzauti;Emilie Bard;Maria Bernard;Carine Brouat;Nathalie Charbonnel;Alexandre Dehne-Garcia;Anne Loiseau;Caroline Tatard;Lucie Tamisier;Muriel Vayssier-Taussat;Helene Vignes;Jean Francois Cosson;

10.1101/039826 — Microbiology — Posted on 2016-06-19

506 DNA from dust: comparative genomics of large DNA viruses in field surveillance samples

Utsav Pandey;Andrew S Bell;Daniel W Renner;David Kennedy;Jacob T Shreve;Chris Cairns;Matthew Jones;Patricia Dunn;Andrew F Read;Moriah L Szpara;

10.1101/039479 — Microbiology — Posted on 2016-06-16

507 Rare variant phasing and haplotypic expression from RNA-sequencing with phASER

Stephane E Castel;Pejman Mohammadi;Wendy K Chung;Yufeng Shen;Tuuli Lappalainen;

10.1101/039529 — Genetics — Posted on 2016-06-03

508 Efficient Breeding by Genomic Mating

Deniz Akdemir;Julio Isidro Sanchez;

10.1101/039214 — Genetics — Posted on 2016-06-27

509 Prius: From Differentiated Genes to Affected Pathways

Shailesh S. Patil;Bharath Venkatesh;Randeep Singh;

10.1101/038901 — Genomics — Posted on 2016-06-08

510 False Discovery Rates: A New Deal.

Matthew Stephens;

10.1101/038216 — Bioinformatics — Posted on 2016-06-08

511 Citizen Science for Mining the Biomedical Literature

Ginger Tsueng;Max Nanis;Jennifer Fouquier;Benjamin M Good;Andrew I Su;

10.1101/038083 — Bioinformatics — Posted on 2016-06-13

512 Incorporating and compensating cerebrospinal fluid in surface-based forward models of magneto- and electroencephalography

Matti Stenroos;Aapo Nummenmaa;

10.1101/037788 — Neuroscience — Posted on 2016-06-24

513 The Neuro Bureau ADHD-200 Preprocessed Repository

Pierre Bellec;Carlton Chu;Francois Chouinard-Decorte;Yassine Benhajali;Daniel S Margulies;Cameron R Craddock;

10.1101/037044 — Neuroscience — Posted on 2016-06-19

514 Advances in two photon scanning and scanless microscopy technologies for functional neural circuit imaging

Simon R Schultz;Caroline Copeland;Amanda Foust;Peter Quicke;Renaud Schuck;

10.1101/036632 — Neuroscience — Posted on 2016-06-03

515 ARGON: fast, whole-genome simulation of the discrete time Wright-Fisher process

Pier Francesco Palamara;

10.1101/036376 — Bioinformatics — Posted on 2016-06-14

516 Comparative analysis of single-cell RNA sequencing methods

Christoph Ziegenhain;Beate Vieth;Swati Parekh;Björn Reinius;Martha Smets;Heinrich Leonhardt;Ines Hellmann;Wolfgang Enard;

10.1101/035758 — Genomics — Posted on 2016-06-29

517 Proteomic indicators of oxidation and hydration state in colorectal cancer

Jeffrey M. Dick;

10.1101/035857 — Biochemistry — Posted on 2016-06-05

518 Nodes in the alpine connectome. Exploring the linkages between riparian ecosystem and geo-climatic elements across the mountain environment

Dragos G Zaharescu;Antonio Palanca-Soler;Peter S Hooda;Catalin Tanase;Carmen I Burghelea;Richard N Lester;

10.1101/035576 — Ecology — Posted on 2016-06-22

519 Hilbert-Schmidt and Sobol sensitivity indices for static and time series Wnt signaling measurements in colorectal cancer - Part A

shriprakash sinha;

10.1101/035519 — Systems Biology — Posted on 2016-06-16

520 Host-pathogen coevolution and the emergence of broadly neutralizing antibodies in chronic infections

Armita Nourmohammad;Jakub Otwinowski;Joshua B Plotkin;

10.1101/034959 — Evolutionary Biology — Posted on 2016-06-20

521 A Multiscale Framework for Deconstructing the Ecosystem Physical Template of High-Altitudes Lakes

Dragos G Zaharescu;Peter S Hooda;Carmen I Burghelea;Antonio Palanca-Soler;

10.1101/034405 — Ecology — Posted on 2016-06-07

522 Evolutionary dynamics of cytoplasmic segregation and fusion: Mitochondrial mixing facilitated the evolution of sex at the origin of eukaryotes

Arunas L Radzvilavicius;

10.1101/034116 — Evolutionary Biology — Posted on 2016-06-04

523 Interactions retain the co-phylogenetic matching that communities lost

Timothee Poisot;Daniel Stouffer;

10.1101/033050 — Evolutionary Biology — Posted on 2016-06-24

524 Strong Selection is Necessary for Evolution of Blindness in Cave Dwellers

Reed A. Cartwright;Rachel S Schwartz;Alexandra L. Merry;Megan M. Howell;

10.1101/031872 — Evolutionary Biology — Posted on 2016-06-09

525 Comprehensive cross-population analysis of high-grade serous ovarian cancer supports no more than three subtypes

Gregory P Way;James Rudd;Chen Wang;Habib Hamidi;Brooke L Fridley;Gottfried Konecny;Ellen L Goode;Casey S Greene;Jennifer A Doherty;

10.1101/030239 — Cancer Biology — Posted on 2016-06-05

526 Hierarchical compression of C. elegans locomotion reveals phenotypic differences in the organisation of behaviour

Alex Gomez-Marin;Greg J Stephens;Andre EX Brown;

10.1101/029462 — Animal Behavior and Cognition — Posted on 2016-06-10

527 Accelerating gene discovery by phenotyping whole-genome sequenced multi- mutation strains and using the sequence kernel association test (SKAT)

Tiffany A Timbers;Stephanie J Garland;Swetha Mohan;Stephane Flibotte;Mark Edgley;Quintin Muncaster;Vinci Au;Erica Li-Leger;Federico Rosell;Jerry Cai;Suzanne Rademakers;Gert Jansen;Donald G Moerman;Michel R Leroux;