bioRxiv directory

Drewry, D. H.; Wells, C. I.; Andrews, D. M.; Angell, R.; Al-Ali, H.; Axtman, A. D.; Capuzzi, S. J.; Elkins, J. M.; Ettmayer, P.; Frederiksen, M.; Gileadi, O.; Gray, N.; Hooper, A.; Knapp, S.; Laufer, S.; Luecking, U.; Muller, S.; Muratov, E.; Denny, R. A.; Saikatendu, K. S.; Treiber, D. K.; Zuercher, W. J.; Willson, T. M.

10.1101/104711 — pharmacology and toxicology — Posted on 2017-01-31

12 Functional Genes That Distinguish Maize Phyllosphere Metagenomes in Drought and Well-Watered Conditions

Methe, B. A.; Li, K.; Talley, S. P.; Gupta, N.; Frank, B.; Xu, W.; Gordon, S. G.; Goodner, B. W.; Stapleton, A. E.

10.1101/104331 — microbiology — Posted on 2017-01-31

13 Generalized Leaky Integrate-And-Fire Models Classify Multiple Neuron Types

Teeter, C.; Iyer, R.; Menon, V.; Gouwens, N.; Feng, D.; Berg, J.; Cain, N.; Koch, C.; Mihalas, S.

10.1101/104703 — neuroscience — Posted on 2017-01-31

14 Process reveals structure: How a network is traversed mediates expectations about its architecture

Karuza, E. A.; Kahn, A. E.; Thompson-Schill, S. L.; Bassett, D. S.

10.1101/104687 — neuroscience — Posted on 2017-01-31

15 Boredom begets creativity: a solution to the exploitation-exploration trade-off in predictive coding

Gomez-Ramirez, J.; Costa, T.

10.1101/104521 — neuroscience — Posted on 2017-01-31

16 Identifying the abundant and active microorganisms common to full scale anaerobic digesters

Kirkegaard, R. H.; McIlroy, S. J.; Kristensen, J. M.; Nierychlo, M.; Karst, S. M.; Dueholm, M. S.; Albertsen, M.; Nielsen, P. H.

10.1101/104620 — microbiology — Posted on 2017-01-31

17 Genome-wide signatures of genetic variation within and between populations - a comparative perspective

Vijay, N.; Weissensteiner, M.; Burri, R.; Kawakami, T.; Ellegren, H.; Wolf, J. B. W.

10.1101/104604 — evolutionary biology — Posted on 2017-01-31

18 Phylogenetic analyses reveal an increase in the speciation rate of raphid pennate diatoms in the Cretaceous

Castro-Bugallo, A.; Rojas, D.; Rocha, S.; Cermeno, P.

10.1101/104612 — ecology — Posted on 2017-01-31

19 A checkpoint roadmap for the complex cell division of Apicomplexa parasites

Alvarez, C. A.; Suvorova, E. S.

10.1101/104646 — cell biology — Posted on 2017-01-31

20 Asymmetric adhesion of rod-shaped bacteria controls microcolony morphogenesis

Duvernoy, M.-C.; Mora, T.; Ardre, M.; Croquette, V.; Bensimon, D.; Quilliet, C.; Ghigo, J.-M.; Balland, M.; Beloin, C.; Lecuyer, S.; Desprat, N.

10.1101/104679 — biophysics — Posted on 2017-01-31

21 DepEst: an R package of important dependency estimators for gene network inference algorithms

Altay, G.; Kurt, Z.; Altay, N.; Aydin, N.

10.1101/102871 — bioinformatics — Posted on 2017-01-31

22 Bootstrap Distillation: Non-parametric Internal Validation of GWAS Results by Subgroup Resampling

Eccles, D. A.; Lea, R. A.; Chambers, G. K.

10.1101/104497 — bioinformatics — Posted on 2017-01-31

23 Meta-analysis of the variance ratio

Traut, N.

10.1101/104695 — bioinformatics — Posted on 2017-01-31

24 Updated reference genome sequence and annotation of Mycobacterium bovis AF2122/97

Malone, K. M.; Farrell, D.; Stuber, T. P.; Schubert, O. T.; Aebersold, R.; Robbe-Austerman, S.; Gordon, S. V.

10.1101/092122 — genomics — Posted on 2017-01-31

25 Sequence features explain most of the mRNA stability variation across genes in yeast

Cheng, J.; Avsec, Z.; Gagneur, J.

10.1101/085522 — genomics — Posted on 2017-01-31

26 A general goodness-of-fit test for survival analysis

Price, M. H.; Jones, J. H.

10.1101/104406 — epidemiology — Posted on 2017-01-31

27 Direct visualization of transcriptional activation by physical enhancer-promoter proximity

Chen, H.; Fujioka, M.; Jaynes, J. B.; Gregor, T.

10.1101/099523 — biophysics — Posted on 2017-01-31

28 NMDAR hypofunction increases top-down influence on sensory processing

Ranson, A.; Broom, E.; Powell, A.; Hall, J.

10.1101/104588 — neuroscience — Posted on 2017-01-31

29 A spiral attractor network drives locomotion in Aplysia

Bruno, A. M.; Frost, W. N.; Humphries, M. D.

10.1101/104562 — neuroscience — Posted on 2017-01-31

30 Ultrasound elicits behavioral responses through mechanical effects on neurons and ion channels in a simple nervous system

Kubanek, J.; Shukla, P.; Das, A.; Baccus, S.; Goodman, M. B. B.

10.1101/104463 — neuroscience — Posted on 2017-01-31

31 Microsaccadic information sampling provides Drosophila hyperacute vision

Juusola, M.; Dau, A.; Song, Z.; Solanki, N.; Rien, D.; Jaciuch, D.; Dongre, S.; Blanchard, F.; de Polavieja, G. G.; Hardie, R. C.; Takalo, J.

10.1101/083691 — neuroscience — Posted on 2017-01-31

32 Co-adaption of tRNA Gene Copy Number and Amino Acid Usage Influences Translation Rates in Three Life Domains

Du, M.-Z.; Wei, W.; Qin, L.; Shuo, L.; Zhang, A.-Y.; Zhang, Y.; Zhou, H.; Guo, F.-B.

10.1101/104570 — genomics — Posted on 2017-01-31

33 Medicago truncatula copper transporter1 (MtCOPT1) delivers copper for symbiotic nitrogen fixation

Senovilla, M.; Castro-Rodriguez, R.; Abreu, I.; Escudero, V.; Kryvoruchko, I. S.; Udvardi, M.; Imperial, J.; Gonzalez-Guerrero, M.

10.1101/104554 — plant biology — Posted on 2017-01-31

34 Auditory prediction errors as individual biomarkers of schizophrenia

Taylor, J. A.; Matthews, N.; Michie, P. T.; Rosa, M. J.; Garrido, M. I.

10.1101/104547 — neuroscience — Posted on 2017-01-31

35 Adaptation to warming increases the strength of an algal-grazer interaction in naturally heated streams

Schaum, C. E.; Ffrench-Constant, R.; Lowe, C.; Olafsson, J. S.; Padfield, D.; Yvon-Durocher, G.; Students of Bio244 course,

10.1101/104513 — ecology — Posted on 2017-01-31

36 Gastruloids develop the three body axes in the absence of extraembryonic tissues and spatially localised signalling

Turner, D.; Alonso-Crisostomo, L.; Girgin, M.; Baillie-Johnson, P.; Glodowski, C. R.; Hayward, P. C.; Collignon, J.; Gustavsen, C.; Serup, P.; Steventon, B.; Lutolf, M.; Martinez Arias, A.

10.1101/104539 — developmental biology — Posted on 2017-01-31

37 Multiple kinesin-14 family members drive microtubule minus-end-directed transport in plant cells

Yamada, M.; Tanaka-Takiguchi, Y.; Hayashi, M.; Nishina, M.; Goshima, G.

10.1101/104471 — cell biology — Posted on 2017-01-31

38 T-DNA integration is rapid and influenced by the chromatin state of the host genome.

Shilo, S.; Tripathi, P.; Melamed-Bessudo, C.; Tzfadia, O.; Muth, T. R.; Levy, A. A.

10.1101/104372 — plant biology — Posted on 2017-01-31

39 Medicago truncatula MOT1.3 is a plasma membrane molybdenum transporter required for nitrogenase activity in root nodules

Tejada-Jimenez, M.; Gil-Diez, P.; Leon-Mediavilla, J.; Wen, J.; Mysore, K.; Imperial, J.; Gonzalez-Guerrero, M.

10.1101/102517 — plant biology — Posted on 2017-01-31

40 Distinct contributions by frontal and parietal cortices support working memory

Mackey, W.; Curtis, C. E.

10.1101/104430 — neuroscience — Posted on 2017-01-31

41 Specific excitatory connectivity for feature integration in mouse primary visual cortex

Muir, D.; Molina-Luna, P.; Roth, M. M.; Helmchen, F.; Kampa, B.

10.1101/072595 — neuroscience — Posted on 2017-01-31

42 Surface-driven RNA-refolding by the OB-fold proteins of the Trypanosoma brucei editosome

Voigt, C.; Dobrychłop, M.; Kruse, E.; Czerwoniec, A.; Kasprzak, J. M.; Bytner, P.; Bujnicki, J. M.; Göringer, H. U.

10.1101/099705 — molecular biology — Posted on 2017-01-31

43 Selection at the pathway level drives the evolution of gene-specific transcriptional noise

Barroso, G. V.; Puzovic, N.; Dutheil, J. Y.

10.1101/104216 — evolutionary biology — Posted on 2017-01-31

44 Experimental evidence that thermal selection has shaped the latitudinal distribution of mitochondrial haplotypes in Australian fruit flies

Camus, M. F.; Wolff, J. N.; Sgro, C. M.; Dowling, D. K.

10.1101/103606 — evolutionary biology — Posted on 2017-01-31

45 Macrophages are required to coordinate mouse digit tip regeneration

Muneoka, K.; Simkin, J.; Sammarco, M.; Marrero, L.; Dawson, L.; Yan, M.; Tucker, C.; Cammack, A.

10.1101/104356 — developmental biology — Posted on 2017-01-31

46 Take ACTION to characterize the functional identity of single cells

Mohammadi, S.; Ravindra, V.; Gleich, D.; Grama, A.

10.1101/081273 — bioinformatics — Posted on 2017-01-31

47 Universal correction of enzymatic sequence bias

Martins, A. L.; Walavalkar, N. M.; Anderson, W. D.; Zang, C.; Guertin, M. J.

10.1101/104364 — genomics — Posted on 2017-01-30

48 A toolkit for tissue-specific protein degradation in C. elegans

Wang, S.; Tang, N. H.; Lara-Gonzalez, P.; Prevo, B.; Cheerambathur, D. K.; Chisholm, A. D.; Desai, A.; Oegema, K.

10.1101/104398 — developmental biology — Posted on 2017-01-30

49 Parallel power posterior analyses for fast computation of marginal likelihoods in phylogenetics

Hoehna, S.; Landis, M. L.; Huelsenbeck, J. P.

10.1101/104422 — bioinformatics — Posted on 2017-01-30

50 Expressing Biologically Active Membrane Proteins in a Cell-Free Transcription-Translation Platform

Guo, S.; Vaish, A.; Chen, Q.; Murray, R. M.

10.1101/104455 — bioengineering — Posted on 2017-01-30

51 Nucleotide sequence and DNaseI sensitivity are predictive of 3D chromatin architecture

Schreiber, J.; Libbrecht, M.; Bilmes, J.; Noble, W.

10.1101/103614 — bioinformatics — Posted on 2017-01-30

52 How we transmit memories to other brains: constructing shared neural representations via communication

Zadbood, A.; Chen, J.; Leong, Y. C.; Norman, K. A.; Hasson, U.

10.1101/081208 — neuroscience — Posted on 2017-01-30

53 Gene co-expression network connectivity is an important determinant of selective constraint

Mahler, N.; Wang, J.; Terebieniec, B. K.; Ingvarsson, P. K.; Street, N. R.; Hvidsten, T. R.

10.1101/078188 — genetics — Posted on 2017-01-30

54 Can pornography be addictive? An fMRI study of men seeking treatment for problematic pornography use.

Gola, M.; Wordecha, M.; Sescousse, G.; Lew-Starowicz, M.; Kossowski, B.; Wypych, M.; Makeig, S.; Potenza, M.; Marchewka, A.

10.1101/057083 — neuroscience — Posted on 2017-01-30

55 Environmental modification via a quorum sensing molecule influences the social landscape of siderophore production

Popat, R.; Harrison, F.; da Silva, A. C.; Easton, S. A. S.; McNally, L.; Williams, P.; Diggle, S. P.

10.1101/053918 — microbiology — Posted on 2017-01-30

56 Consistent local dynamics in the brain across sessions are revealed by whole brain modeling of resting state activity

Donnelly-Kehoe, P. A.; Saenger, V. M.; Lisofsky, N.; Kuhn, S.; Kringelbach, M. L.; Schwarzbach, J.; Deco, G.

10.1101/104232 — neuroscience — Posted on 2017-01-30

57 Probabilistic forecasting in infectious disease epidemiology: The thirteenth Armitage lecture

Held, L.; Meyer, S.; Bracher, J.

10.1101/104000 — epidemiology — Posted on 2017-01-30

58 Fighting over food unites the birds of North America in a continental dominance hierarchy

Miller, E. T.; Bonter, D. N.; Eldermire, C.; Freeman, B. G.; Greig, E. I.; Harmon, L. J.; Lisle, C.; Hochachka, W. M.

10.1101/104133 — ecology — Posted on 2017-01-30

59 Host autophagosomes are diverted to a plant-pathogen interface

Dagdas, Y.; Pandey, P.; Sanguankiattichai, N.; Tumtas, Y.; Belhaj, K.; Duggan, C.; Segretin, M.; Kamoun, S.; Bozkurt, T. O.

10.1101/102996 — plant biology — Posted on 2017-01-30

60 Approaches for calculating solvation free energies and enthalpies demonstrated with an update of the FreeSolv database

Duarte Ramos Matos, G.; Kyu, D. Y.; Loeffler, H. H.; Chodera, J. D.; Shirts, M. R.; Mobley, D.

10.1101/104281 — pharmacology and toxicology — Posted on 2017-01-30

61 Gender-specific brain activation during visual art perception

de Gelder, B.; Watson, R.; Zhan, M.; Diano, M.; Tamietto, M.; Vaessen, M.

10.1101/104166 — neuroscience — Posted on 2017-01-30

62 Shorter unreported sequences in a RACE-Seq study involving seven tissues confirms ~150 novel transcripts identified in MCF-7 cell line PacBio transcriptome, leaving ~100 non-redundant transcripts exclusive to the cancer cell line

Chakraborty, S.

10.1101/104257 — genomics — Posted on 2017-01-30

63 Regulatory DNA in A. thaliana can tolerate high levels of sequence divergence

Alexandre, C. M.; Urton, J. R.; Jean-Baptiste, K.; Dorrity, M. W.; Cuperus, J. C.; Sullivan, A. M.; Bemm, F.; Jolic, D.; Arsovski, A. A.; Thompson, A.; Nemhauser, J. L.; Fields, S.; Weigel, D.; Bubb, K. L.; Queitsch, C.

10.1101/104323 — genomics — Posted on 2017-01-30

64 Selection at the pathway level drives the evolution of gene-specific transcriptional noise

Barroso, G. V.; Dutheil, J. Y.; Puzovic, N.

10.1101/104216 — evolutionary biology — Posted on 2017-01-30

65 Allele Frequency Spectrum in a Cancer Cell Population

Ohtsuki, H.; Innan, H.

10.1101/104158 — cancer biology — Posted on 2017-01-30

66 A tandem simulation framework for predicting mapping quality

Langmead, B.

10.1101/103952 — bioinformatics — Posted on 2017-01-30

67 Cannabinoid glycosides: In vitro production of a new class of cannabinoids with improved physicochemical properties

Hardman, J. M.; Brooke, R. T.; Zipp, B. J.

10.1101/104349 — biochemistry — Posted on 2017-01-30

68 WIDE-SCALE COMPARATIVE ANALYSIS OF LONGEVITY GENES AND GENETIC INTERVENTIONS

Yanai, H.; Budovsky, A.; Barzilay, T.; Tacutu, R.; Fraifeld, V. E.

10.1101/104182 — systems biology — Posted on 2017-01-30

69 In-Depth Resistome Analysis by Targeted Metagenomics

Lanza, V. F.; Baquero, F.; Martinez, J. L.; Ramos-Ruiz, R.; Gonzalez-Zorn, B.; Andremont, A.; Sanchez-Valenzuela, A.; Ehrlich, D.; Kennedy, S.; Ruppe, E.; van Schaik, W.; Willems, R. J.; de la Cruz, F.; Coque, T. M.

10.1101/104224 — microbiology — Posted on 2017-01-30

70 T3SS effector VopL inhibits the host ROS response, promoting the intracellular survival of Vibrio parahaemolyticus

de Souza Santos, M.; Salomon, D.; Orth, K.

10.1101/104315 — microbiology — Posted on 2017-01-30

71 A non-catalytic role of RecBCD in Homology Directed Gap Repair and Translesion Synthesis

Laureti, L.; Lee, L.; PHILIPPIN, G.; Pages, V.

10.1101/102509 — microbiology — Posted on 2017-01-30

72 A High Quality Assembly of the Nile Tilapia (Oreochromis niloticus) Genome Reveals the Structure of Two Sex Determination Regions

Conte, M. A.; Gammerdinger, W. J.; Bartie, K. L.; Penman, D. J.; Kocher, T. D.

10.1101/099564 — genomics — Posted on 2017-01-30

73 Purifying selection provides buffering of the natural variation co-expression network in a forest tree species

Mahler, N.; Wang, J.; Terebieniec, B. K.; Ingvarsson, P. K.; Street, N. R.; Hvidsten, T. R.

10.1101/078188 — genetics — Posted on 2017-01-30

74 Fiber tractography using machine learning

Neher, P. F.; Cote, M.-A.; Houde, J.-C.; Descoteaux, M.; Maier-Hein, K. H.

10.1101/104190 — neuroscience — Posted on 2017-01-30

75 The immunomodulatory CEA cell adhesion molecule 6 (CEACAM6/CD66c) is a candidate receptor for the influenza A virus

Rahman, S. K.; Ansari, M. A.; Gaur, P.; Ahmad, I.; Chakravarty, C.; Verma, D. K.; Chhibber, S.; Nehal, N.; Sellathanby, S.; Wirth, D.; Waris, G.; Lal, S. K.

10.1101/104026 — microbiology — Posted on 2017-01-30

76 Toxoplasma gondii AP2IX-4 regulates gene expression during bradyzoite development

Huang, S.; Holmes, M. J.; Radke, J. B.; Hong, D.-P.; Liu, T.-K.; White, M. W.; Sullivan, W. J.

10.1101/104208 — microbiology — Posted on 2017-01-30

77 Olig2 and Hes regulatory dynamics during motor neuron differentiation revealed by single cell transcriptomics

Sagner, A.; Gaber, Z.; Delile, J.; Kong, J. H.; Rousso, D. L.; Pearson, C. A.; Weicksel, S. E.; Mousavy Gharavy, N.; Briscoe, J.; Novitch, B.

10.1101/104307 — developmental biology — Posted on 2017-01-30

78 The differential spatiotemporal expression pattern of shelterin genes throughout lifespan

Wanger, K.-D.; Ying, Y.; Leong, W.; Jiang, J.; Hu, X.; Chen, Y.; Michiels, J.-F.; Lu, Y.; Gilson, E.; Wagner, N.; Ye, J.

10.1101/104299 — developmental biology — Posted on 2017-01-30

79 Whole genome sequencing and assembly of a Caenorhabditis elegans genome with complex genomic rearrangements using the MinION sequencing device

Tyson, J. R.; O'Neil, N. J.; Jain, M.; Olsen, H. E.; Hieter, P.; Snutch, T. P.

10.1101/099143 — genomics — Posted on 2017-01-30

80 Real-time spike sorting platform for high-density extracellular probes with ground-truth validation and drift correction

Jun, J. J.; Mitelut, C.; Lai, C.; Gratiy, S.; Anastassiou, C.; Harris, T. D.

10.1101/101030 — neuroscience — Posted on 2017-01-30

81 Efficacy of the β-lactam\β-lactamase inhibitor combination is linked to WhiB4 mediated changes in redox physiology of Mycobacterium tuberculosis

Mishra, S.; Shukla, P.; Bhaskar, A.; Anand, K.; Baloni, P.; Jha, R. K.; Mohan, A. K.; Rajmani, R. S.; Nagaraja, V.; Chandra, N.; Singh, A.

10.1101/103028 — microbiology — Posted on 2017-01-30

82 Quantitative Seq-LGS: Genome-Wide Identification of Genetic Drivers of Multiple Phenotypes in Malaria Parasites

Abkallo, H.; Martinelli, A.; Inoue, M.; Ramaprasad, A.; Xangsayarath, P.; Gitaka, J.; Tang, J.; Yahata, K.; Zoungrana, A.; Mitaka, H.; Hunt, P.; Carter, R.; Kaneko, O.; Mustonen, V.; Illingworth, C. J.; Pain, A.; Culleton, R.

10.1101/078451 — genomics — Posted on 2017-01-30

83 Geometry can provide long-range mechanical guidance for embryogenesis

Dicko, M.; Saramito, P.; Blanchard, G. B.; Lye, C. M.; Sanson, B.; Etienne, J.

10.1101/075309 — developmental biology — Posted on 2017-01-30

84 Proteogenomics of adenosine-to-inosine RNA editing in fruit fly

Kuznetsova, K. G.; Ilina, I. Y.; Chernobrovkin, A. L.; Novikova, S. E.; Farafonova, T. E.; Karpov, D. S.; Ivanov, M. V.; Voronko, O. E.; Ilgisonis, E. V.; Kliuchnikova, A. A.; Zgoda, V. G.; Zubarev, R. A.; Gorshkov, M. V.; Moshkovskii, S. A.

10.1101/101949 — biochemistry — Posted on 2017-01-30

85 Methods for discovering genomic loci exhibitingcomplex patterns of differential methylation

Hardcastle, T. J.

10.1101/021436 — bioinformatics — Posted on 2017-01-30

86 Transcriptional response to West Nile virus infection in the zebra finch (Taeniopygia guttata), a songbird model for immune function

Newhouse, D.; Hofmeister, E. K.; Balakrishnan, C. N.

10.1101/103564 — genomics — Posted on 2017-01-29

87 THiCweed: fast, sensitive motif finding by clustering big data sets

Agrawal, A.; Narlikar, L.; Siddharthan, R.

10.1101/104109 — bioinformatics — Posted on 2017-01-29

88 Comparison of Principal Component Analysis and t-Stochastic Neighbor Embedding with Distance Metric Modifications for Single-cell RNA-sequencing Data Analysis

Kwon, H.; Fan, J.; Kharchenko, P.

10.1101/102780 — bioinformatics — Posted on 2017-01-29

89 Information seeking and simulation: Roles of attention in guiding a goal-directed behavior

Akaishi, R.; Hoshi, E.

10.1101/104091 — animal behavior and cognition — Posted on 2017-01-29

90 Evaluation of Oxford Nanopore MinION Sequencing for 16S rRNA Microbiome Characterization

Ma, X.; Stachler, E.; Bibby, K.

10.1101/099960 — microbiology — Posted on 2017-01-29

91 MCF-7 breast cancer cell line PacBio generated transcriptome has ~300 novel transcribed regions, un-annotated in both RefSeq and GENCODE, and absent in the liver, heart and brain transcriptomes

Chakraborty, S.

10.1101/100974 — genomics — Posted on 2017-01-29

92 BIDS Apps: Improving ease of use, accessibility, and reproducibility of neuroimaging data analysis methods

Gorgolewski, K. J.; Alfaro-Almagro, F.; Auer, T.; Bellec, P.; Capota, M.; Chakravarty, M. M.; Churchill, N. W.; Cohen, A. L.; Craddock, R. C.; Devenyi, G. A.; Eklund, A.; Esteban, O.; Flandin, G.; Ghosh, S. S.; Guntupalli, J. S.; Jenkinson, M.; Keshavan, A.; Kiar, G.; Liem, F.; Raamana, P. R.; Raffelt, D.; Steele, C. J.; Quirion, P.-O.; Smith, R. E.; Strother, S. C.; Varoquaux, G.; Yarkoni, T.; Wang, Y.; Poldrack, R. A.

10.1101/079145 — neuroscience — Posted on 2017-01-29

93 Super-resolution microscopy of the β-carboxysome reveals a homogenous matrix

Niederhuber, M. J.; Lambert, T. J.; Yapp, C.; Silver, P. A.; Polka, J. K.

10.1101/086090 — cell biology — Posted on 2017-01-29

94 The Importance of Reverse Translation for Preclinical Off-Target Mitigation: Quantification and Mitigation of Biases in the FDA Adverse Event Reporting System

Maciejewski, M.; Lounkine, E.; Whitebread, S.; Farmer, P.; DuMouchel, B.; Shoichet, B. K.; Urban, L.

10.1101/068692 — pharmacology and toxicology — Posted on 2017-01-29

95 A comparative analysis of Chikungunya and Zika transmission

Riou, J.; Poletto, C.; Boelle, P.-Y.

10.1101/078923 — epidemiology — Posted on 2017-01-29

96 Arabidopsis JASMONATE-INDUCED OXYGENASES down-regulate plant immunity by hydroxylation and inactivation of the hormone jasmonic acid

Caarls, L.; Elberse, J.; Awwanah, M.; Ludwig, N. R.; de Vries, M.; Zeilmaker, T.; Van Wees, S. C. M.; Schuurink, R. C.; Van den Ackerveken, G.

10.1101/102103 — plant biology — Posted on 2017-01-29

97 Semiparametric methods for estimation of a non-linear exposure-outcome relationship using instrumental variables with application to Mendelian randomization

Staley, J. R.; Burgess, S.

10.1101/103986 — genetics — Posted on 2017-01-29

98 Outlier detection for improved differential splicing quantification from RNA-Seq experiments withreplicates

Norton, S.; Vaquero-Garcia, J.; Barash, Y.

10.1101/104059 — bioinformatics — Posted on 2017-01-29

99 Improving the performance of minimizers andwinnowing schemes

Marcais, G.; Pellow, D.; Bork, D.; Orenstein, Y.; Shamir, R.; Kingsford, C.

10.1101/104075 — bioinformatics — Posted on 2017-01-29

100 DNA topology in chromatin is defined by nucleosome spacing

Nikitina, T.; Norouzi, D.; Grigoryev, S. A.; Zhurkin, V. B.

10.1101/104083 — molecular biology — Posted on 2017-01-29

101 Linclust: clustering protein sequences in linear time

Steinegger, M.; Soding, J.

10.1101/104034 — bioinformatics — Posted on 2017-01-29

102 Genome-wide Search for Zelda-like Chromatin Signatures Identifies GAF as a Pioneer Factor in Early Fly Development

Moshe, A.; Kaplan, T.

10.1101/104067 — bioinformatics — Posted on 2017-01-29

103 Ribo-attenuators: novel elements for reliable and modular riboswitch engineering

Folliard, T.; Mertins, B.; Newport, T.; Steel, H.; Prescott, T. P.; Jones, C. W.; Bayer, T.; Armitage, J. P.; Papachristodoulou, A.; Rothschild, L. J.

10.1101/086199 — synthetic biology — Posted on 2017-01-29

104 Evaluation of Oxford Nanopore MinION Sequencing for 16S rRNA Microbiome Characterization

Ma, X.; Stachler, E.; Bibby, K.

10.1101/099960 — microbiology — Posted on 2017-01-29

105 Cleavage modification did not alter early blastomere fates during bryozoan evolution

Vellutini, B. C.; Martin-Duran, J. M.; Hejnol, A.

10.1101/068783 — developmental biology — Posted on 2017-01-29

106 Incorporating the Rate of Transcriptional Change Improves Construction of Gene Regulatory Networks

Desai, J.; Sartor, R. C.; Lawas, L. M.; Jagadish SV, K.; Doherty, C. J.

10.1101/093807 — bioinformatics — Posted on 2017-01-29

107 Repliscan: a tool for classifying replication timing regions

Zynda, G. J.; Song, J.; Concia, L.; Wear, E. E.; Hanley-Bowdoin, L.; Thompson, W. F.; Vaughn, M. W.

10.1101/094177 — bioinformatics — Posted on 2017-01-29

108 No evidence for avoidance of black rat scent by the presumably less competitive Natal multimammate mouse in a choice experiment

Cuypers, L. N.; Cuypers, W. L.; Gildemyn-Blomme, A.; Abraham, L.; Aertbelien, S.; Massawe, A.; Borremans, B.; Gryseels, S.; Leirs, H.

10.1101/103853 — zoology — Posted on 2017-01-28

109 Is Democracy the Right System? Collaborative Approaches to Building an Engaged RDM Community

Teperek, M.; Higman, R.; Kingsley, D.

10.1101/103895 — scientific communication and education — Posted on 2017-01-28

110 Longitudinal samples of bacterial genomes potentially bias evolutionary analyses

Arnold, B. J.; Hanage, W. P.

10.1101/103465 — genomics — Posted on 2017-01-28

111 Joint estimation of relatedness coefficients and allele frequencies from ancient samples

Theunert, C.; Racimo, F.; Slatkin, M.

10.1101/103903 — evolutionary biology — Posted on 2017-01-28

112 A novel Word2vec based tool to estimate semantic similarity of genes by using Gene Ontology terms

Duong, D.; Eskin, E.; Li, J.

10.1101/103648 — bioinformatics — Posted on 2017-01-28

113 Deep Recurrent Neural Network for Protein Function Prediction from Sequence

Liu, X.

10.1101/103994 — bioinformatics — Posted on 2017-01-28

114 Heterogeneous firing responses predict diverse couplings to presynaptic activity in mice layer V pyramidal neurons

Zerlaut, Y.; Destexhe, A.

10.1101/091587 — neuroscience — Posted on 2017-01-28

115 Nucleotide sequence and DNaseI sensitivity are predictive of 3D chromatin architecture

Schreiber, J.; Libbrecht, M.; Bilmes, J.; Noble, W.

10.1101/103614 — bioinformatics — Posted on 2017-01-28

116 Take ACTION to characterize the functional identity of single cells

Mohammadi, S.; Ravindra, V.; Gleich, D.; Grama, A.

10.1101/081273 — bioinformatics — Posted on 2017-01-28

117 Heterogeneity of hypothalamic Pro-opiomelanocortin-expressing neurons revealed by single-cell RNA sequencing

Lam, B. Y. H.; Cimino, I.; Polex-Wolf, J.; Kohnke, S. N.; Rimmington, D.; Iyemere, V.; Heeley, N.; Cossetti, C.; Schulte, R.; Saraiva, L. R.; Logan, D. W.; Blouet, C.; O'Rahilly, S.; Coll, A.; Yeo, G. S. H.

10.1101/103408 — neuroscience — Posted on 2017-01-28

118 Cognitive task information is transferred between brain regions via resting-state network topology

Ito, T.; Kulkarni, K. R.; Schultz, D. H.; Mill, R. D.; Chen, R. H.; Solomyak, L. I.; Cole, M. W.

10.1101/101782 — neuroscience — Posted on 2017-01-28

119 Marchantia liverworts as a proxy to plants basal microbiomes.

Alcaraz, L. D.; Peimbert, M.; Dorantes-Acosta, A. E.; Bowman, J. L.; Arteaga-Vazquez, M. A.

10.1101/103861 — microbiology — Posted on 2017-01-28

120 Model communities hint to promiscuous metabolic linkages between ubiquitous free-living freshwater bacteria

Garcia, S. L.; Buck, M.; Hamilton, J. J.; Wurzbacher, C.; Alm Rosenblad, M. A.; McMahon, K. D. D.; Grossart, H.-P.; Warnecke, F.; Eiler, A.

10.1101/103838 — microbiology — Posted on 2017-01-28

121 De Novo PacBio long-read and phased avian genome assemblies correct and add to genes important in neuroscience research

Korlach, J.; Gedman, G.; King, S.; Chin, J.; Howard, J.; Cantin, L.; Jarvis, E. D.

10.1101/103911 — genomics — Posted on 2017-01-28

122 Initiation of DNA replication requires actin dynamics and formin activity

Parisis, N.; Krasinska, L.; Harker, B.; Urbach, S.; Rossignol, M.; Camasses, A.; Dewar, J.; Morin, N.; Fisher, D.

10.1101/102806 — cell biology — Posted on 2017-01-28

123 Multispot single-molecule FRET: high-throughput analysis of freely diffusing molecules

Ingargiola, A.; Lerner, E.; Chung, S.; Panzeri, F.; Gulinatti, A.; Rech, I.; Ghioni, M.; Weiss, S.; Michalet, X.

10.1101/085027 — biophysics — Posted on 2017-01-28

124 Review: Population Structure in Genetic Studies: Confounding Factors and Mixed Models

Martin, L. S.; Eskin, E.

10.1101/092106 — bioinformatics — Posted on 2017-01-28

125 Understanding sequence conservation with deep learning

Li, Y.; Quang, D.; Xie, X.

10.1101/103929 — bioinformatics — Posted on 2017-01-28

126 A computational toolbox and step-by-step tutorial for the analysis of neuronal population dynamics in calcium imaging data

Romano, S. A.; Perez-Schuster, V.; Jouary, A.; Candeo, A.; Boulanger-Weill, J.; Sumbre, G.

10.1101/103879 — neuroscience — Posted on 2017-01-28

127 The ultrastructure of Shewanella oneidensis MR-1 nanowires revealed by electron cryo-tomography

Subramanian, P.; Pirbadian, S.; El-Naggar, M. Y.; Jensen, G. J.

10.1101/103242 — microbiology — Posted on 2017-01-28

128 Modelling haplotypes with respect to reference cohort variation graphs

Rosen, Y.; Eizenga, J.; Paten, B.

10.1101/101659 — genomics — Posted on 2017-01-28

129 Astral microtubule dynamics regulate anaphase * oscillation onset and set a robust final position * of the C. elegans zygote spindle.

Bouvrais, H.; Chesneau, L.; Pastezeur, S.; Delattre, M.; Pecreaux, J.

10.1101/103937 — biophysics — Posted on 2017-01-28

130 TIDE: predicting translation initiation sites by deep learning

Zhang, S.; Hu, H.; Jiang, T.; Zhang, L.; Zeng, J.

10.1101/103374 — bioinformatics — Posted on 2017-01-28

131 Comparison of Principal Component Analysis and t-Stochastic Neighbor Embedding with Distance Metric Modifications for Single-cell RNA-sequencing Data Analysis

Kwon, H.; Fan, J.; Kharchenko, P.

10.1101/102780 — bioinformatics — Posted on 2017-01-28

132 Escape Excel: a tool for preventing gene symbol and accession conversion errors

Welsh, E. A.; Stewart, P. A.; Kuenzi, B. M.

10.1101/103820 — bioinformatics — Posted on 2017-01-27

133 aBayesQR: A Bayesian method for reconstruction of viral populations characterized by low diversity

Ahn, S.; Vikalo, H.

10.1101/103630 — bioinformatics — Posted on 2017-01-27

134 Health Information Needs and Health Seeking Behavior during the 2014-2016 Ebola Outbreak: A Twitter Content Analysis

Odlum, M.; Yoon, S.

10.1101/103515 — bioinformatics — Posted on 2017-01-27

135 Applying polygenic risk scoring for psychiatric disorders within a family context

de Jong, S.; Abdalla Diniz, M. J.; Saloma Rodrigues, A. C.; Gadelha, A.; Santoro, M. L.; Ota, V. K.; Noto, C.; Major Depressive Disorder and Bipolar Disorder Wor, ; Curtis, C.; Patel, H.; Hall, L. S.; O'Reilly, P. F.; Belangero, S. I.; Bressan, R.; Breen, G.

10.1101/103713 — genetics — Posted on 2017-01-27

136 A fast approximate algorithm for mapping long reads to large reference databases

Jain, C.; Dilthey, A.; Koren, S.; Aluru, S.; Phillippy, A. M.

10.1101/103812 — bioinformatics — Posted on 2017-01-27

137 Colour vision models: a practical guide, some simulations, and colourvision R package.

Gawryszewski, F. M.

10.1101/103754 — animal behavior and cognition — Posted on 2017-01-27

138 No evidence of early head circumference enlargements in children later diagnosed with autism in Israel

Dinstein, I.; Haar, S.; Atsmon, S.; Schtaerman, H.

10.1101/103788 — neuroscience — Posted on 2017-01-27

139 Spontaneous development of cerebrovascular pathology and microinfarcts in a mouse model of sickle cell disease.

Hyacinth, H. I.; Sugihara, C. L.; Spencer, T. L.; Archer, D. R.; Shih, A. Y.

10.1101/103309 — neuroscience — Posted on 2017-01-27

140 Grid cells show field-to-field variability and this explains the aperiodic response of inhibitory interneurons

Dunn, B.; Wennberg, D.; Huang, Z.; Roudi, Y.

10.1101/101899 — neuroscience — Posted on 2017-01-27

141 Structural connectome topology relates to regional BOLD signal dynamics in the mouse brain

Sethi, S. S.; Zerbi, V.; Wenderoth, N.; Fornito, A.; Fulcher, B. D.

10.1101/085514 — neuroscience — Posted on 2017-01-27

142 Peripheral Htt silencing does not ameliorate central signs of disease in the B6. HttQ111/+ mouse model of Huntington’s Disease

Coffey, S. R.; Bragg, R. M.; Minnig, S.; Ament, S. A.; Cantle, J. P.; Glickenhaus, A.; Shelnut, D.; Carrillo, J.; Shuttleworth, D. D.; Rodier, J.-A.; Noguchi, K.; Bennett, C. F.; Price, N. D.; Kordasiewicz, H. B.; Carroll, J. B.

10.1101/096990 — neuroscience — Posted on 2017-01-27

143 Efficacy of the β-lactam\β-lactamase inhibitor combination is linked to WhiB4 mediated changes in redox physiology of Mycobacterium tuberculosis

Singh, A.; Mishra, S.; Shukla, P.; Bhaskar, A.; Anand, K.; Baloni, P.; Jha, R. K.; Mohan, A.; Rajmani, R. S.; Nagaraja, V.; Chandra, N.

10.1101/103028 — microbiology — Posted on 2017-01-27

144 Predicting the structure and function of coalesced microbial communities

Sierocinski, P.; Milferstedt, K.; Bayer, F.; Grosskopf, T.; Alston, M.; Bastkowski, S.; Swarbreck, D.; Hobbs, P. J.; Soyer, O. S.; Hamelin, J.; Buckling, A.

10.1101/101436 — microbiology — Posted on 2017-01-27

145 European Flint reference sequences complement the maize pan-genome

Unterseer, S.; Seidel, M. A.; Bauer, E.; Haberer, G.; Hochholdinger, F.; Opitz, N.; Marcon, C.; Baruch, K.; Spannagl, M.; Mayer, K. F. X.; Schon, C.-C.

10.1101/103747 — genomics — Posted on 2017-01-27

146 Higher genetic risk of schizophrenia is associated with lower cognitive performance in healthy individuals

Shafee, R.; Nanda, P.; Padmanabhan, J. L.; Tandon, N.; Alliey-Rodriguez, N.; Keefe, R. S. E.; Hill, S. K.; Bishop, J. R.; Clementz, B. A.; Tamminga, C. A.; Gershon, E. S.; Pearlson, G. D.; Keshavan, M. S.; Sweeney, J. A.; Robinson, E. B.; McCarroll, S. A.

10.1101/103622 — genetics — Posted on 2017-01-27

147 Systematic Design and Comparison of Expanded Carrier Screening Panels

Beauchamp, K. A.; Muzzey, D.; Wong, K. K.; Hogan, G. J.; Karimi, K.; Candille, S. I.; Mehta, N.; Kaseniit, K. E.; Mar-Heyming, R.; Kang, H. P.; Evans, E. A.; Goldberg, J. D.; Lazarin, G. A.; Haque, I. S.

10.1101/080713 — genetics — Posted on 2017-01-27

148 High GC Content Causes De Novo Created Proteins to be Intrinsically Disordered

Basile, W.; Sachenkova, O.; Light, S.; Elofsson, A.

10.1101/103739 — evolutionary biology — Posted on 2017-01-27

149 The Negev hospital-university-based (HUB) autism database

Meiri, G.; Dinstein, I.; Michaelowski, A.; Flusser, H.; Ilan, M.; Faroy, M.; Bar-Sinai, A.; Manelis, L.; Stolowicz, D.; Yosef, L.; Davidovitch, N.; Golan, H.; Arbelle, S.; Menashe, I.

10.1101/103770 — epidemiology — Posted on 2017-01-27

150 Decreasing before increasing: Evolution of nitrogen availability conditions in French forest ecosystems over the last century according to forest herbs

Riofrio-Dillon, G.; Gegout, J.-C.; Bertrand, R.

10.1101/103721 — ecology — Posted on 2017-01-27

151 Rapid antidepressant effects of the psychedelic ayahuasca in treatment-resistant depression: a randomised placebo-controlled trial

Palhano-Fontes, F.; Barreto, D.; Onias, H.; Andrade, K. C.; Novaes, M.; Pessoa, J.; Mota-Rolim, S.; Osorio, F. L.; Sanches, R.; dos Santos, R.; Tofoli, L.; Silveira, G.; Yonamine, M.; Riba, J.; Santos, F. R.; Silva-Junior, A. A.; Alchieri, J.; Galvao-Coelho, N.; Lobao-Soares, B.; Hallak, J.; Arcoverde, E.; Maia-de-Oliveira, J.; de Araujo, D. B.

10.1101/103531 — clinical trials — Posted on 2017-01-27

152 Computing Osmotic Permeabilities of Aquaporins AQP4, AQP5, and GlpF from Near-Equilibrium Simulations

Wambo, T. O.; Rodriguez, R. A.; Chen, L. Y.

10.1101/102343 — biophysics — Posted on 2017-01-27

153 Accessible, curated metagenomic data through ExperimentHub

Pasolli, E.; Schiffer, L.; Renson, A.; Obenchain, V.; Manghi, P.; Truong, D. T.; Beghini, F.; Malik, F.; Ramos, M.; Dowd, J. B.; Huttenhower, C.; Morgan, M.; Segata, N.; Waldron, L.

10.1101/103085 — bioinformatics — Posted on 2017-01-27

154 Denoising genome-wide histone ChIP-seq with convolutional neural networks

Koh, P. W.; Pierson, E.; Kundaje, A.

10.1101/052118 — bioinformatics — Posted on 2017-01-27

155 Colour Preferences of UK Garden Birds at Supplementary Seed Feeders

Rothery, L.; Scott, G. W.; Morrell, L.

10.1101/103671 — animal behavior and cognition — Posted on 2017-01-27

156 Ribosome reinitiation can explain length-dependent translation of messenger RNA

Rogers, D. W.; Boettcher, M. A.; Traulsen, A.; Greig, D.

10.1101/103689 — molecular biology — Posted on 2017-01-27

157 A miRNA catalogue and ncRNA annotation of theshort-living fish Nothobranchius furzeri

Baumgart, M.; Barth, E.; Savino, A.; Groth, M.; Koch, P.; Petzold, A.; Arisi, I.; Platzer, M.; Marz, M.; Cellerino, A.

10.1101/103697 — genomics — Posted on 2017-01-27

158 Revealing the causative variant in Mendelian patient genomes without revealing patient genomes

Jagadeesh, K. A.; Wu, D. J.; Birgmeier, J. A.; Boneh, D.; Bejerano, G.

10.1101/103655 — genomics — Posted on 2017-01-27

159 Spontaneous mutations and transmission distortions of genic copy number variants shape the standing genetic variation in Picea glauca

Sahli, A.; Giguere, I.; Bousquet, J.; MacKay, J.

10.1101/103796 — genomics — Posted on 2017-01-27

160 Experimental evidence that thermal selection has shaped the latitudinal distribution of mitochondrial haplotypes in Australian fruit flies

Camus, F.; Wolff, J. N.; Sgro, C. M.; Dowling, D. K.

10.1101/103606 — evolutionary biology — Posted on 2017-01-27

161 Fine-scale landscape genomics of Aedes aegypti reveals loss of Wolbachia transinfection, dispersal barrier and potential for occasional long distance movement

Schmidt, T. L.; Filipovic, I.; Hoffmann, A. A.; Rasic, G.

10.1101/103598 — ecology — Posted on 2017-01-27

162 Radiative energy budgets of phototrophic surface-associated microbial communities and their photosynthetic efficiency under diffuse and collimated light

Lichtenberg, M.; Elgetti Brodersen, K.; Kuhl, M.

10.1101/103705 — ecology — Posted on 2017-01-27

163 Reverse-complement parameter sharing improves deep learning models for genomics

Shrikumar, A.; Greenside, P.; Kundaje, A.

10.1101/103663 — bioinformatics — Posted on 2017-01-27

164 Nucleotide sequence and DNaseI sensitivity are predictive of 3D chromatin architecture

Schreiber, J.; Libbrecht, M.; Bilmes, J.; Noble, W.

10.1101/103614 — bioinformatics — Posted on 2017-01-27

165 The evolution of central dogma of molecular biology: a logic-based dynamic approach

Jafari, M.; Mirzaie, M.

10.1101/103127 — systems biology — Posted on 2017-01-26

166 In vivo translatome profiling reveals early defects in ribosome biology underlying SMA pathogenesis

Bernabo, P.; Tebaldi, T.; Groen, E. J.; Lane, F. M.; Perenthaler, E.; Mattedi, F.; Newbery, H. J.; Zhou, H.; Zuccotti, P.; Potrich, V.; Muntoni, F.; Quattrone, A.; Gillingwater, T. H.; Viero, G.

10.1101/103481 — neuroscience — Posted on 2017-01-26

167 Neural noise in the age-varying human brain predicts perceptual decisions

Waschke, L.; Woestmann, M.; Obleser, J.

10.1101/103432 — neuroscience — Posted on 2017-01-26

168 Heterogeneity of hypothalamic Pro-opiomelanocortin-expressing neurons revealed by single-cell RNA sequencing

10.1101/103408 — neuroscience — Posted on 2017-01-26

169 Cryo-Electron Microscopy Structure of the Macrobrachium Rosenbergii Nodavirus Capsid at 7 Angstroms Resolution

Ho, K. L.; Kueh, C. L.; Beh, P. L.; Tan, W. S.; Bhella, D.

10.1101/103424 — microbiology — Posted on 2017-01-26

170 The 4D Nucleome Project

Dekker, J.; Belmont, A. S.; Guttman, M.; Leshyk, V. O.; Lis, J. T.; Lomvardas, S.; Mirny, L. A.; O'Shea, C. C.; Park, P. J.; Ren, B.; Ritland, J. C.; Shendure, J.; Zhong, S.; The 4D Nucleome Network,

10.1101/103499 — genomics — Posted on 2017-01-26

171 Ultra-fast Identity by Descent Detection in Biobank-Scale Cohorts using Positional Burrows-Wheeler Transform

Naseri, A.; Liu, X.; Zhang, S.; Zhi, D.

10.1101/103325 — genomics — Posted on 2017-01-26

172 Genetic effects on chromatin accessibility foreshadow gene expression changes in macrophage immune response

Alasoo, K.; Rodrigues, J.; Mukhopadhyay, S.; Knights, A. J.; Mann, A. L.; Kundu, K.; Consortium, H.; Hale, C.; Dougan, G.; Gaffney, D. J.

10.1101/102392 — genomics — Posted on 2017-01-26

173 Array-based sequencing of filaggrin gene for comprehensive detection of disease-associated variants

Wong, X. F. C. C.; Denil, S. L. I. J.; Foo, J. N.; Chen, H.; Tay, A. S. L.; Haines, R. L.; Tang, M. B. Y.; McLean, W. H. I.; Lane, E. B.; Liu, J.; Common, J. E.

10.1101/103416 — genetics — Posted on 2017-01-26

174 Contemporary evolution of a Lepidopteran species, Heliothis virescens, in response to modern agricultural practices

Fritz, M. L.; Deyonke, A. M.; Papanicolaou, A.; Micinski, S.; Westbrook, J.; Gould, F.

10.1101/103382 — evolutionary biology — Posted on 2017-01-26

175 The mitochondrial genomes of the acoelomorph wormsParatomella rubra and Isodiametra pulchra

Robertson, H.; Lapraz, F.; Telford, M.; Schiffer, P. H.

10.1101/103556 — evolutionary biology — Posted on 2017-01-26

176 Sexual reproduction as bet-hedging

Li, X.-Y.; Lehtonen, J.; Kokko, H.

10.1101/103390 — evolutionary biology — Posted on 2017-01-26

177 Trait correlates of climatic niche tracking in British birds

Rapacciuolo, G.; Robinson, R. A.; Gillings, S.; Purvis, A.

10.1101/103507 — ecology — Posted on 2017-01-26

178 Unifying Population and Landscape Ecology with Spatial Capture-recapture

Royle, J. A.; Fuller, A. K.; Sutherland, C.

10.1101/103341 — ecology — Posted on 2017-01-26

179 Mapping load-bearing in the mammalian spindle reveals local kinetochore-fiber anchorage that provides mechanical isolation and redundancy

Elting, M. W.; Prakash, M.; Udy, D. B.; Dumont, S.

10.1101/103572 — cell biology — Posted on 2017-01-26

180 Heterogeneity in the tumour size dynamics differentiates Vemurafenib, Dabrafenib and Trametinib in metastatic melanoma

Mistry, H.; Orrell, D.; Eftimie, R.

10.1101/103366 — cancer biology — Posted on 2017-01-26

181 TIDE: predicting translation initiation sites by deep learning

Zhang, S.; Hu, H.; Jiang, T.; Zhang, L.; Zeng, J.

10.1101/103374 — bioinformatics — Posted on 2017-01-26

182 PGS: a dynamic and automated population-based genome structure software

Hua, N.; Tjong, H.; Shin, H.; Gong, K.; Zhou, X. J.; Alber, F.

10.1101/103358 — bioinformatics — Posted on 2017-01-26

183 LRSim: a Linked Reads Simulator generating insights for better genome partitioning

Luo, R.; Sedlazeck, F. J.; Darby, C. A.; Kelly, S. M.; Schatz, M. C.

10.1101/103549 — bioinformatics — Posted on 2017-01-26

184 Inferential Learning of Serial Order of Perceptual Categories by Rhesus Monkeys (Macaca mulatta)

Tanner, N.; Jensen, G.; Ferrera, V. P.; Terrace, H. S.

10.1101/102897 — animal behavior and cognition — Posted on 2017-01-26

185 Tomato immune receptor Ve1 recognizes surface-exposed co-localized N- and C-termini of Verticillium dahliae effector Ave1

Song, Y.; Zhang, Z.; Boshoven, J.; Rovenich, H.; Seidl, M.; Jakse, J.; Maruthachalam, K.; Liu, C.-M.; Subbarao, K.; Javornik, B.; Thomma, B.

10.1101/103473 — plant biology — Posted on 2017-01-26

186 Attention selectively reshapes the geometry of distributed semantic representation

Nastase, S. A.; Connolly, A. C.; Oosterhof, N. N.; Halchenko, Y. O.; Guntupalli, J. S.; Visconti di Oleggio Castello, M.; Gors, J.; Gobbini, M. I.; Haxby, J. V.

10.1101/045252 — neuroscience — Posted on 2017-01-26

187 Reporting correct p-values in VEGAS analyses

Hecker, J.; Maaser, A.; Prokopenko, D.; Fier, H.; Lange, C.

10.1101/101014 — genetics — Posted on 2017-01-26

188 Remodeling Pathway Control of Oxidative Phosphorylation by Temperature in the Heart

Lemieux, H.; Blier, P. U.; Gnaiger, E.

10.1101/103457 — biochemistry — Posted on 2017-01-26

189 Targeted re-sequencing reveals the genetic signatures and the reticulate history of barley domestication

Pankin, A.; Altmuller, J.; Becker, C.; von Korff, M.

10.1101/070078 — plant biology — Posted on 2017-01-26

190 Consistency of EEG source localization and connectivity estimates

Mahjoory, K.; Nikulin, V. V.; Botrel, L.; Linkenkaer-Hansen, K.; Fato, M. M.; Haufe, S.

10.1101/071597 — neuroscience — Posted on 2017-01-26

191 The genomic basis of adaptation to the deep water ‘twilight zone’ in Lake Malawi cichlid fishes

Hahn, C.; Genner, M. J.; Turner, G. F.; Joyce, D. A.

10.1101/102830 — evolutionary biology — Posted on 2017-01-26

192 Super-resolution microscopy of the β-carboxysome reveals a homogenous matrix

Niederhuber, M. J.; Lambert, T. J.; Yapp, C.; Silver, P. A.; Polka, J. K.

10.1101/086090 — cell biology — Posted on 2017-01-26

193 A Probabilistic Approach to the Diagnosis of Obstructive Sleep Apnea and an Analysis of Factors Affecting it Using Chest Movement Analysis, Recursive Noise Reduction and Self-Learning Algorithms.

Ramnani, R.; Tripathi, A.

10.1101/080515 — biophysics — Posted on 2017-01-26

194 Core Genes Evolve Rapidly in the Long-term Evolution Experiment with Escherichia coli

Maddamsetti, R.; Hatcher, P. J.; Green, A. G.; Williams, B. L.; Marks, D. S.; Lenski, R. E.

10.1101/042069 — evolutionary biology — Posted on 2017-01-26

195 CIDR: Ultrafast and accurate clustering through imputation for single-cell RNA-Seq data

Lin, P.; Troup, M.; Ho, J. W. K.

10.1101/068775 — bioinformatics — Posted on 2017-01-26

196 Cell proliferation depends on the direct binding between PKM2 and AKAP-Lbc

Chen, X.; Carnegie, G. K.

10.1101/103333 — biochemistry — Posted on 2017-01-26

197 Mitochondrial RNA processing in absence of tRNApunctuations in octocorals

Shimpi, G. G.; Vargas, S.; Poliseno, A.; Woerheide, G.

10.1101/103036 — molecular biology — Posted on 2017-01-25

198 Translating ceRNA susceptibilities into correlation functions

Martirosyan, A.; Marsili, M.; De Martino, A.

10.1101/102988 — systems biology — Posted on 2017-01-25

199 Gut microbiota and resistome dynamics in intensive care patients receiving selective digestive tract decontamination

Buelow, E.; de Jesus Bello Gonzalez, T.; Fuentes, S.; de Steenhuijsen Piters, W. A. A.; Lahti, L.; Bayjanov, J. R.; Majoor, E. A. M.; Braat, J. C.; van Mourik, M. S. M.; Oostdijk, E. A. N.; Willems, R. J. L.; Bonten, M. J. M.; van Passel, M. W. J.; Smidt, H.; van Schaik, W.

10.1101/102467 — microbiology — Posted on 2017-01-25

200 Severe acute dehydration in a desert rodent elicits a transcriptional response that effectively prevents kidney injury

MacManes, M. D.

10.1101/103077 — genomics — Posted on 2017-01-25

201 Multiple-trait Bayesian Regression Methods with Mixture Priors for Genomic Prediction

CHENG, H.; Kizilkaya, K.; Zeng, J.; Garrick, D.; Fernando, R.

10.1101/102962 — genetics — Posted on 2017-01-25

202 Genetic contributions to trail making test performance in UK Biobank

Hagenaars, S.; Cox, S. R.; Hill, W. D.; Davies, G.; Liewald, D. C.; CHARGE consortium Cognitive Working Group, ; Harris, S. E.; McIntosh, A. M.; Gale, C. R.; Deary, I.

10.1101/103119 — genetics — Posted on 2017-01-25

203 UMI-Reducer: Collapsing duplicate sequencing reads via Unique Molecular Identifiers

Mangul, S.; Van Driesche, S.; Martin, L. S.; Martin, K. C.; Eskin, E.

10.1101/103267 — bioinformatics — Posted on 2017-01-25

204 New Techniques for Ancient Proteins: Direct Coupling Analysis Applied on Proteins involved in Iron Sulfur Cluster Biogenesis

Fantini, M.; Malinverni, D.; De Los Rios, P.; Pastore, A.

10.1101/103283 — bioinformatics — Posted on 2017-01-25

205 CrosstalkNet: mining large-scale bipartite co-expression networks to characterize epi-stroma crosstalk

Manem, V. S.; Adam, G.; Gruosso, T.; Gigoux, M.; Bertos, N.; Park, M.; Haibe-Kains, B.

10.1101/102848 — systems biology — Posted on 2017-01-25

206 Documenting and Evaluating Data Science Contributions in Academic Promotion in Departments of Statistics and Biostatistics

Waller, L. A.

10.1101/103093 — scientific communication and education — Posted on 2017-01-25

207 Spatial Attention Enhances the Neural Representation of Invisible Signals Embedded in Noise

Smout, C. A.; Mattingley, J. B.

10.1101/102731 — neuroscience — Posted on 2017-01-25

208 Neural correlates of perceptual constancy in Auditory Cortex

Town, S.; Wood, K. C.; Bizley, J. K.

10.1101/102889 — neuroscience — Posted on 2017-01-25

209 Decoding the categorization of visual motion with magnetoencephalography

Bekhti, Y.; Gramfort, A.; Zilber, N.; van Wassenhove, V.

10.1101/103044 — neuroscience — Posted on 2017-01-25

210 Pure Correlates of Exploration and Exploitation in the Human Brain

Blanchard, T. C.; Gershman, S. J.

10.1101/103135 — neuroscience — Posted on 2017-01-25

211 Disambiguating brain functional connectivity

Duff, E.; Makin, T.; Smith, S. M.; Woolrich, M. W.

10.1101/103002 — neuroscience — Posted on 2017-01-25

212 Alternative Methods for Mitochondrial Transplantation: Efficiency of Unpackaged and Lipid-Packaged Preparations

McPhie, D. L.; Sargent, L. W.; Babb, S. M.; Ben-Shachar, D.; Cataldo, A. M.; Cohen, B. M.

10.1101/102913 — molecular biology — Posted on 2017-01-25

213 The Nucleosome Remodelling and Deacetylation complex restricts Mediator access to enhancers to control transcription

Xenophontos, M.; Reynolds, N.; Gharbi, S.; Johnstone, E.; Signolet, J.; Floyd, R.; Ralser, M.; Borneloev, S.; Dietmann, S.; Loos, R.; Bertone, P.; Hendrich, B.

10.1101/103192 — molecular biology — Posted on 2017-01-25

214 Calculating the statistical significance of rare variants causal for Mendelian and complex disorders

Rao, A. R.; Nelson, S. F.

10.1101/103218 — genetics — Posted on 2017-01-25

215 Heritability enrichment of specifically expressed genes identifies disease-relevant tissues and cell types

Finucane, H.; Reshef, Y.; Anttila, V.; Slowikowski, K.; Gusev, A.; Byrnes, A.; Gazal, S.; Loh, P.-R.; Genovese, G.; Saunders, A.; Macosko, E.; Pollack, S.; The Brainstorm Consortium, ; Perry, J. R. B.; Raychaudhuri, S.; McCarroll, S.; Neale, B.; Price, A.

10.1101/103069 — genetics — Posted on 2017-01-25

216 High density genome scan for selection signatures in French sheep reveals allelic heterogeneity and introgression at adaptive loci

Rochus, C. M.; Tortereau, F.; Plisson-Petit, F.; Restoux, G.; Moreno-Romieux, C.; Tosser-Klopp, G.; Servin, B.

10.1101/103010 — genetics — Posted on 2017-01-25

217 Inferring the Joint Demographic History of Multiple Populations: Beyond the Diffusion Approximation

Jouganous, J.; Long, W.; Gravel, S.

10.1101/103275 — evolutionary biology — Posted on 2017-01-25

218 Estimating correlated rates of trait evolution with uncertainty

Caetano, D. S.; Harmon, L. J.

10.1101/102939 — evolutionary biology — Posted on 2017-01-25

219 The genomic basis of adaptation to the deep water ‘twilight zone’ in Lake Malawi cichlid fishes

Hahn, C.; Genner, M. J.; Turner, G. T.; Joyce, D. A.

10.1101/102830 — evolutionary biology — Posted on 2017-01-25

220 Resolution of conflict between parental genomes in a hybrid species

Eroukhmanoff, F.; Bailey, R. I.; Elgvin, T. O.; Hermansen, J. S.; Runemark, A.; Trier, C. N.; Saetre, G.-P.

10.1101/102970 — evolutionary biology — Posted on 2017-01-25

221 Drivers of diversification in individual life courses

Hernandez-Pacheco, R.; Steiner, U. K.

10.1101/103184 — ecology — Posted on 2017-01-25

222 Early frameshift alleles of zebrafish tbx5a that fail to develop the heartstrings phenotype

Chiavacci, E.; Kirchgeorg, L.; Felker, A.; Burger, A.; Mosimann, C.

10.1101/103168 — developmental biology — Posted on 2017-01-25

223 A systematic screen for morphological abnormalities during fission yeast sexual reproduction identifies a mechanism of actin aster formation for cell fusion

Dudin, O.; Merlini, L.; Bendezu, F. O.; Groux, R.; Vincenzetti, V.; Martin, S. G.

10.1101/103176 — cell biology — Posted on 2017-01-25

224 Initiation of DNA replication requires actin dynamics and formin activity

Nikolaos, P.; Krasinska, L.; Harker, B.; Urbach, S.; Rossignol, M.; Camasses, A.; Dewar, J.; Morin, N.; Fisher, D.

10.1101/102806 — cell biology — Posted on 2017-01-25

225 Context-Aware Prediction of Pathogenicity of Missense Mutations Involved in Human Disease

Feinauer, C.; Weigt, M.

10.1101/103051 — bioinformatics — Posted on 2017-01-25

226 kpLogo: positional k-mer analysis reveals hidden specificity in biological sequences

Wu, X.; Bartel, D.

10.1101/102921 — bioinformatics — Posted on 2017-01-25

227 DATS: the data tag suite to enable discoverability of datasets

Sansone, S.-A.; Gonzalez-Beltran, A.; Rocca-Serra, P.; Alter, G.; Grethe, J. S.; Xu, H.; Fore, I.; Lyle, J.; Gururaj, A. E.; Chen, X.; Kim, H.; Zong, N.; Li, Y.; Liu, R.; Ozyurt, I. B.; Ohno-Machado, L.; Members, b. W. G.

10.1101/103143 — bioinformatics — Posted on 2017-01-25

228 DepEst: an R package of important dependency estimators for gene network inference algorithms

Altay, G.; Kurt, Z.; Altay, N.; Aydin, N.

10.1101/102871 — bioinformatics — Posted on 2017-01-25

229 A Parallel Multiobjective Metaheuristic for Multiple Sequence Alignment

Rubio-Largo, A.; Vega-Rodriguez, M. A.

10.1101/103101 — bioinformatics — Posted on 2017-01-25

230 Interactive analysis of Long-read RNA isoforms with Iso-Seq Browser

Hu, J.; Uapinyoying, P.; Goecks, J.

10.1101/102905 — bioinformatics — Posted on 2017-01-25

231 Cell-to-cell Modeling of the interface between Atrial and Sinoatrial Anisotropic Heterogeneous Nets II: Mechanisms Underlying Nets Dynamics

Lopez, G.; Abrego, N. P.; Godinez, R.

10.1101/103259 — bioengineering — Posted on 2017-01-25

232 Cell Mechanosensing and Avoidance of Strain Gradients

Chagnon-Lessard, S.; Jean-Ruel, H.; Godin, M.; Pelling, A. E.

10.1101/095976 — biophysics — Posted on 2017-01-25

233 Cell-to-cell Modelling of the inter-phase between Atrial and Sinoatrial Anisotropic Heterogeneous Nets

Lopez, G.; Castellanos, N. P.; Godinez, R.

10.1101/082529 — bioengineering — Posted on 2017-01-25

234 Implicating candidate genes at GWAS signals by leveraging topologically associating domains

Way, G. P.; Youngstrom, D. W.; Hankenson, K. D.; Greene, C. S.; Grant, S. F. A.

10.1101/087718 — bioinformatics — Posted on 2017-01-25

235 The complex origins of strigolactone signalling in land plants

Bythell-Douglas, R.; Rothfels, C. J.; Stevenson, D. W. D.; Graham, S. W.; Wong, G. K.-S.; Nelson, D. C.; Bennett, T.

10.1101/102715 — plant biology — Posted on 2017-01-25

236 Population structure and coalescence in pedigrees: comparisons to the structuredcoalescent and a framework for inference

Wilton, P. R.; Baduel, P.; Landon, M. M.; Wakeley, J.

10.1101/054957 — evolutionary biology — Posted on 2017-01-25

237 Designing the database for microarray experiments metadata

Lykhenko, O.; Frolova, A.; Obolenska, M.

10.1101/101956 — bioinformatics — Posted on 2017-01-25

238 Development of a Reference Spatiotemporal Gait Data Set for Indian Subjects: A Pilot Study

Ramnani, R.; Mukul, P.; Jain, S.; Tripathi, A.

10.1101/080499 — bioengineering — Posted on 2017-01-25

239 Mechanical activation of epithelial Na+ channel relies on an interdependent activity of the extracellular matrix and extracellular N-glycans of αENaC

Knoepp, F.; Ashley, Z.; Barth, D.; Kazantseva, M.; Szczesniak, P. P.; Clauss, W. G.; Althaus, M.; Alvarez de la Rosa, D.; Fronius, M.

10.1101/102756 — cell biology — Posted on 2017-01-25

240 Gαq Mediates Clozapine Effects in Caenorhabditis elegans

Hao, L.; Tong, Y.; Harrington, K.; O'Neill, J. L.; Sheikholeslami, A.; Wang, X.; Freedman, J. H.; Cohen, B. M.; Buttner, E. A.

10.1101/101998 — genetics — Posted on 2017-01-24

241 Ecological and demographic drivers of jellyfish blooms

Goldstein, J.; Steiner, U. K.

10.1101/102814 — ecology — Posted on 2017-01-24

242 Comparison of Principal Component Analysis and t-Stochastic Neighbor Embedding with Distance Metric Modifications for Single-cell RNA-sequencing Data Analysis

Kwon, H.; Fan, J.; Kharchenko, P.

10.1101/102780 — bioinformatics — Posted on 2017-01-24

243 Structure of the Full-length VEGFR-1 Extracellular Domain in Complex with VEGF-A

Markovic-Mueller, S.; Stuttfeld, E.; Asthana, M.; Weinert, T.; Bliven, S. E.; Goldie, K. N.; Kisko, K.; Capitani, G.; Ballmer-Hofer, K.

10.1101/102822 — biochemistry — Posted on 2017-01-24

244 Infectious Reactivation of Cytomegalovirus Explaining Age-and Sex-Specific Patterns of Seroprevalence

van Boven, M.; van de Kassteele, J.; Korndewal, M. J.; van Dorp, C. H.; Kretzschmar, M.; van der Klis, F.; de Melker, H. E.; Vossen, A. C.; van Baarle, D.

10.1101/102491 — epidemiology — Posted on 2017-01-24

245 Optimizing for generalization in the decoding of internally generated activity in the hippocampus

van der Meer, M.; Carey, A. A.; Tanaka, Y.

10.1101/066670 — neuroscience — Posted on 2017-01-24

246 Darwin: A Hardware-acceleration Framework for Genomic Sequence Alignment

Turakhia, Y.; Zheng, K. J.; Bejerano, G.; Dally, W. J.

10.1101/092171 — genomics — Posted on 2017-01-24

247 WikiGenomes: an open Web application for community consumption and curation of gene annotation data in Wikidata.

Putman, T. E.; Lelong, S.; Burgstaller-Muelhbacher, S.; Waagmeester, A.; Diesh, C.; Dunn, N.; Munoz-Torres, M.; Stupp, G.; Su, A.; Good, B. M.

10.1101/102046 — genomics — Posted on 2017-01-24

248 Metagenomic Next-Generation Sequencing Detects Pulmonary Pathogens in Hematopoietic Cellular Transplant Patients with Acute Respiratory Illnesses

Langelier, C.; Zinter, M. S.; Kalantar, K.; Yank, G. A.; Christenson, S.; Odonovan, B.; White, C.; Wilson, M. R.; Sapru, A.; Dvorak, C. C.; Miller, S.; Chiu, C. Y.; DeRisi, J. L.

10.1101/102798 — genomics — Posted on 2017-01-24

249 Genome-wide association mapping of correlated traits in cassava: dry matter and total carotenoid content

Rabbi, I. Y.; Udoh, L. I.; Wolfe, M.; Parkes, E. Y.; Gedil, M. A.; Dixon, A.; Ramu, P.; Jannink, J.-L.; Kulakow, P.

10.1101/102665 — genetics — Posted on 2017-01-24

250 Sex differences in the epidemiology of tattoo skin disease in captive common bottlenose dolphins (Tursiops truncatus): are males more vulnerable than females?

Van Bressem, M.-F.; Van Waerebeek, K.; Duignan, P. J.

10.1101/101915 — epidemiology — Posted on 2017-01-24

251 Phylodynamics without trees: estimating R0 directly from pathogen sequences

Plazzotta, G.; Colijn, C.

10.1101/102061 — epidemiology — Posted on 2017-01-24

252 StereoGene: Rapid Estimation of Genomewide Correlation of Continuous or Interval Feature Data

Stavrovskaya, E. D.; Niranjan, T.; Fertig, E. J.; Wheelan, S. J.; Favorov, A.; Mironov, A.

10.1101/059584 — bioinformatics — Posted on 2017-01-24

253 Diverse yet highly selective interorgan crosstalk mechanisms shape the bodywide transcriptome landscape

Takada, N.; Omae, M.; Sagawa, F.; Chi, N.; Endo, S.; Kozawa, S.; Sato, T. N.

10.1101/102723 — systems biology — Posted on 2017-01-24

254 The complex origins of strigolactone signalling in land plants

Bythell-Douglas, R.; Rothfels, C. J.; Stevenson, D. W. D.; Graham, S. W.; Wong, G. K.-S.; Nelson, D. C.; Bennett, T.

10.1101/102715 — plant biology — Posted on 2017-01-24

255 Genome urbanization: Clusters of topologically co-regulated genes delineate functional compartments in the genome of S. cerevisiae

Tsochatzidou, M.; Malliarou, M.; Papanikolaou, N.; Roca, J.; Nikolaou, C.

10.1101/064667 — genomics — Posted on 2017-01-24

256 Mass-spectrometry of single mammalian cells quantifies proteome heterogeneity during cell differentiation

Budnik, B.; Levy, E.; Slavov, N.

10.1101/102681 — systems biology — Posted on 2017-01-24

257 Medicago truncatula Zinc-Iron Permease6 provides zinc to rhizobia-infected nodule cells

Abreu, I.; Saez, A.; Castro-Rodriguez, R.; Escudero, V.; Rodriguez-Haas, B.; Senovilla, M.; Laure, C.; Grolimund, D.; Tejada-Jimenez, M.; Imperial, J.; Gonzalez-Guerrero, M.

10.1101/102426 — plant biology — Posted on 2017-01-24

258 Medicago truncatula MOT1.3 is a plasma membrane molybdenum transporter required for nitrogenase activity in root nodules

Tejada-Jimenez, M.; Gil-Diez, P.; Leon-Mediavilla, J.; Wen, J.; Mysore, K.; Imperial, J.; Gonzalez-Guerrero, M.

10.1101/102517 — plant biology — Posted on 2017-01-24

259 Basal forebrain gating by somatostatin neurons drives cortical activity

Espinosa, N.; Alonso, A.; Morales, C.; Fuentealba, P.

10.1101/102582 — neuroscience — Posted on 2017-01-24

260 From affect to control: Functional specialization of the insula in motivation and regulation

Wager, T. D.; Barrett, L. F.

10.1101/102368 — neuroscience — Posted on 2017-01-24

261 The butterfly effect: amplification of local changes along the temporal processing hierarchy

Yeshurun, Y.; Nguyen, M.; Hasson, U.

10.1101/102590 — neuroscience — Posted on 2017-01-24

262 Locomotion enhances neural encoding of visual stimuli in mouse V1

Dadarlat, M. C.; Stryker, M. P.

10.1101/102673 — neuroscience — Posted on 2017-01-24

263 Family history and APOE4 risk for Alzheimer’s Disease impact the neural correlates of episodic memory by early midlife

Rajah, M. N.; Wallace, L. M. K.; Ankudowich, E.; Naumova, D.; Pruessner, J. C.; Joober, R.; Gauthier, S.; Pasvanis, S.

10.1101/102699 — neuroscience — Posted on 2017-01-24

264 Machine learning identifies SNPs predictive of advanced coronary artery calcium in ClinSeq(R) and Framingham Heart Study cohorts

Oguz, C.; Sen, S. K.; Davis, A. R.; Fu, Y.-P.; O'Donnell, C. J.; Gibbons, G. H.

10.1101/102350 — genomics — Posted on 2017-01-24

265 An analytic approach for interpretable predictive models in high dimensional data, in the presence of interactions with exposures

Bhatnagar, S. R.; Yang, Y.; Khundrakpam, B. S.; Evans, A.; Blanchette, M.; Bouchard, L.; Greenwood, C. M.

10.1101/102475 — genomics — Posted on 2017-01-24

266 Genome-wide association mapping of correlated traits in cassava: dry matter and total carotenoid content

Rabbi, I. Y.; Udoh, L. I.; Wolfe, M.; Parkes, E. Y.; Gedil, M. A.; Dixon, A.; Ramu, P.; Jannink, J.-L.; Kulakow, P.

10.1101/102665 — genetics — Posted on 2017-01-24

267 Invasion fitness for gene-culture co-evolution in the family and an application to cumulative culture under vertical transmission

Mullon, C.; Lehmann, L.

10.1101/102624 — evolutionary biology — Posted on 2017-01-24

268 Prolonged exposure does not increase soil microbial community response to warming along geothermal gradients

Radujkovic, D.; Verbruggen, E.; Sigurdsson, B. D.; Leblans, N. I.; Vica, S.; Weedon, J. T.

10.1101/102459 — ecology — Posted on 2017-01-24

269 A defined platform of human peri-gastrulation-like biological fate patterning reveals coordination between Reaction-Diffusion and Positional-Information

Tewary, M.; Ostblom, J. E.; Shakiba, N.; Zandstra, P. W.

10.1101/102376 — developmental biology — Posted on 2017-01-24

270 Photorelease of Diacylglycerol Increases the Amplitude and Duration of Protein Kinase C-BetaII Relocation in cyto

Goedhart, J.; Gadella, T. W. J.

10.1101/102657 — cell biology — Posted on 2017-01-24

271 A Molecular Signature for Anastasis, Recovery from the Brink of Apoptotic Cell Death

Sun, G.; Guzman, E.; Zhou, H. R.; Kosik, K.; Montell, D. J.

10.1101/102640 — cell biology — Posted on 2017-01-24

272 Elucidating interplay of speed and accuracy in biological error correction

Banerjee, K.; Kolomeisky, A. B.; Igoshin, O. A.

10.1101/102608 — biophysics — Posted on 2017-01-24

273 Production of Multilayer Cell Mass from Olfactory Stem Cell and Its Utilization Potential in Nervous Tissue Regeneration

Oztel, O. N. N.; Allahverdiyev, A. M.; Batioglu Karaaltin, A.; Bagirova, M.; Ovali, E.

10.1101/102434 — bioengineering — Posted on 2017-01-24

274 PEAPOD limits developmental plasticity in Arabidopsis.

White, D. W. R.

10.1101/102707 — plant biology — Posted on 2017-01-23

275 Literature Consistency of Bioinformatics Sequence Databases is Effective for Assessing Record Quality

Bouadjenek, M. R.; Verspoor, K.; Zobel, J.

10.1101/101873 — bioinformatics — Posted on 2017-01-23

276 A previously established divergent lineage of the hybrid fungal pathogen Verticillium longisporum emerges as stem striping pathogen in British oilseed rape

Depotter, J.; Seidl, M.; van den berg, G.; Thomma, B.; Wood, T.

10.1101/102541 — microbiology — Posted on 2017-01-23

277 Staphylococcus aureus Biofilm Removal by Targeting Biofilm-Associated Extracellular Proteins

Shukla, S. K.; Rao, T. S.

10.1101/102384 — microbiology — Posted on 2017-01-23

278 RNA Gelation in Repeat Expansion Disorders

Jain, A.; Vale, R. D.

10.1101/100719 — biophysics — Posted on 2017-01-23

279 Chemotaxis microsimulation: On the gain in nutrient uptake and bacterial cell division with chemotaxis mechanism

Saha, S.; Sruthi, C. K.; Prakash, M.

10.1101/102400 — biophysics — Posted on 2017-01-23

280 The circadian dynamics of small nucleolar RNA

Aitken, S.; Semple, C. A. M.

10.1101/102533 — bioinformatics — Posted on 2017-01-23

281 Structure, and culture and predicted function of the gut microbiome of the Mormon cricket Anabrus simplex

Smith, C. C.; Srygley, R. B.; Healy, F.; Swaminath, K.; Mueller, U. G.

10.1101/080846 — microbiology — Posted on 2017-01-23

282 Allele specific expression and methylation in thebumblebee, Bombus terrestris

Lonsdale, Z. N.; Lee, K.; Kyriakidou, M.; Amarasinghe, H.; Nathanael, D.; Mallon, E. B.

10.1101/022657 — evolutionary biology — Posted on 2017-01-23

283 Closed-loop estimation of retinal network sensitivity reveals signature of efficient coding

Ferrari, U.; Gardella, C.; Marre, O.; Mora, T.

10.1101/096313 — neuroscience — Posted on 2017-01-23

284 The role of gene expression in the recent evolution of resistance in a model host parasite system

Lohman, B. K.; Steinel, N.; Weber, J.; Bolnick, D.

10.1101/102301 — evolutionary biology — Posted on 2017-01-22

285 A genetic basis for molecular asymmetry at vertebrate electrical synapses

Miller, A. C.; Whitebirch, A. C.; Shah, A. N.; Marsden, K. C.; Granato, M.; O'Brien, J.; Moens, C. B.

10.1101/102319 — neuroscience — Posted on 2017-01-22

286 Adaptive motivational signalling from the anterior cingulate cortex to the ventral tegmental area

Elston, T. W.; Bilkey, D. K.

10.1101/102178 — neuroscience — Posted on 2017-01-22

287 Polymer physics of nuclear organization and function

Amitai, A.; Holcman, D.

10.1101/076661 — biophysics — Posted on 2017-01-22

288 Multi-generational silencing dynamics control cell aging

Li, Y.; Jin, M.; O'Laughlin, R.; Tsimring, L. S.; Pillus, L.; Hasty, J.; Hao, N.

10.1101/102210 — systems biology — Posted on 2017-01-22

289 DeepScope: Nonintrusive Whole Slide Saliency Annotation and Prediction from Pathologists at the Microscope

Schaumberg, A. J.; Sirintrapun, S. J.; Al-Ahmadie, H. A.; Schueffler, P. J.; Fuchs, T. J.

10.1101/097246 — pathology — Posted on 2017-01-22

290 SynEM: Automated synapse detection for connectomics

Staffler, B.; Berning, M.; Boergens, K. M.; Gour, A.; van der Smagt, P.; Helmstaedter, M.

10.1101/099994 — neuroscience — Posted on 2017-01-22

291 The idiosyncratic nature of confidence

Navajas, J.; Hindocha, C.; Foda, H.; Keramati, M.; Latham, P. E.; Bahrami, B.

10.1101/102269 — neuroscience — Posted on 2017-01-22

292 Transcriptional repression by ApiAP2 factors is central to chronic toxoplasmosis

Radke, J. B.; Worth, D.; Hong, D.-P.; Huang, S.; Sullivan, W. J.; Wilson, E. H.; White, M.

10.1101/100628 — microbiology — Posted on 2017-01-22

293 Heterozygous RFX6 protein truncating variants cause Maturity-Onset Diabetes of the Young (MODY) with reduced penetrance

Patel, K. A.; Laakso, M.; Stancakova, A.; Laver, T. W.; Colclough, K.; Johnson, M. B.; Kettunen, J.; Tuomi, T.; Cnop, M.; Shepherd, M. H.; Flanagan, S. E.; Ellard, S.; Hattersley, A. T.; Weedon, M. N.

10.1101/101881 — genetics — Posted on 2017-01-22

294 Cortical elasticity determines the geometry of prospective mesoderm constriction in Drosophila melanogaster

Doubrovinski, K.

10.1101/102277 — developmental biology — Posted on 2017-01-22

295 Human microcephaly ASPM protein is a spindle pole-focusing factor

Ito, A.; Tungadi, E. A.; Kiyomitsu, T.; Goshima, G.

10.1101/102236 — cell biology — Posted on 2017-01-22

296 Intraoperative biomechanics of lumbar pedicle screw loosening following successful arthrodesis

Pearson, H. B.; Dobbs, C. J.; Grantham, E.; Niebur, G. L.; Chappuis, J. L.; Boerckel, J. D.

10.1101/057935 — bioengineering — Posted on 2017-01-22

297 Adaptive motivational signalling from the Anterior Cingulate Cortex to the Ventral Tegmental Area

Elston, T. W.; Bilkey, D. K.

10.1101/102178 — neuroscience — Posted on 2017-01-22

298 Challenges for Bayesian Model Selection of Dynamic Causal Models

van den Honert, R.; Shultz, S.; Johnson, M. K.; McCarthy, G.

10.1101/102293 — neuroscience — Posted on 2017-01-22

299 A New Hyperprior Distribution for Bayesian Regression Model with Application in Genomics

Rodrigues Silva, R.

10.1101/102244 — genetics — Posted on 2017-01-22

300 Defects in Meiotic Recombination Delay Progression Through Pachytene in Mouse Spermatocytes

Crichton, J. H.; Read, D. R.; Adams, I. R.

10.1101/102251 — genetics — Posted on 2017-01-22

301 Monod-Wyman-Changeux Analysis of Ligand-Gated Ion Channel Mutants

Einav, T.; Phillips, R.

10.1101/102194 — biophysics — Posted on 2017-01-22

302 Proteogenomics of adenosine-to-inosine RNA editing in fruit fly

10.1101/101949 — biochemistry — Posted on 2017-01-22

303 Tuning of recombinant protein expression in Escherichia coli by manipulating transcription, translation initiation rates and incorporation of non-canonical amino acids

Schlesinger, O.; Chemla, Y.; Heltberg, M.; Ozer, E.; Marshall, R.; Noireaux, V.; Jensen, M. H.; Alfonta, L.

10.1101/100982 — synthetic biology — Posted on 2017-01-22

304 Tex19.1 Regulates Meiotic DNA Double Strand Break Frequency in Mouse Spermatocytes

Crichton, J. H.; Playfoot, C. J.; MacLennan, M.; Read, D.; Cooke, H. J.; Adams, I. R.

10.1101/099119 — genetics — Posted on 2017-01-22

305 Long-term genomic coevolution of host-parasite interaction in the natural environment

Laanto, E.; Hoikkala, V.; Ravantti, J.; Sundberg, L.-R.

10.1101/101576 — microbiology — Posted on 2017-01-21

306 TOP-DOWN FEEDBACK CONTROLS SPATIAL SUMMATION AND RESPONSE GAIN IN PRIMATE VISUAL CORTEX

Nurminen, L.; Merlin, S.; Bijanzadeh, M.; Federer, F.; Angelucci, A.

10.1101/094680 — neuroscience — Posted on 2017-01-21

307 Synthetic OCP Heterodimers are Photoactive and Recapitulate the Fusion of Two Primitive Carotenoproteins in the Evolution of Cyanobacterial Photoprotection

Lechno-Yossef, S.; Melnicki, M. R.; Bao, H.; Montgomery, B. L.; Kerfeld, C. A.

10.1101/102160 — plant biology — Posted on 2017-01-21

308 Fitness determinants of vancomycin-resistant Enterococcus faecium during growth in human serum

Zhang, X.; Guzman Prieto, A. M.; de Maat, V.; Prajsnar, T. K.; Bayjanov, J. R.; de Been, M.; Rogers, M. R. C.; Bonten, M. J. M.; Mesnage, S.; Willems, R. J. L.; van Schaik, W.

10.1101/101329 — microbiology — Posted on 2017-01-21

309 Ploidy tug-of-war: evolutionary and genetic environments influence the rate of ploidy drive in a human fungal pathogen

Gerstein, A.; Lim, H.; Berman, J.; Hickman, M.

10.1101/084467 — evolutionary biology — Posted on 2017-01-21

310 Density-dependent selection in evolutionary genetics: a lottery model of Grime’s triangle

Bertram, J.; Masel, J.

10.1101/102087 — evolutionary biology — Posted on 2017-01-21

311 NODDI-DTI: extracting neurite orientation and dispersionparameters from a diffusion tensor

Edwards, L. J.; Pine, K. J.; Weiskopf, N.; Mohammadi, S.

10.1101/077099 — biophysics — Posted on 2017-01-21

312 De novo assembly of viral quasispecies using overlap graphs

Baaijens, J.; Zine El Aabidine, A.; Rivals, E.; Schoenhuth, A.

10.1101/080341 — bioinformatics — Posted on 2017-01-21

313 Experimental Zika Virus Infection in a New World Monkey Model Reproduces Key Features of the Human Disease

Chiu, C. Y.; Bouquet, J.; Li, T.; Yagi, S.; Sanchez San Martin, C.; Tamhankar, M.; Hodara, V. L.; Parodi, L. L.; Somasekar, S.; Yu, G.; Giavedoni, L. D.; Tardif, S.; Patterson, J.

10.1101/102145 — microbiology — Posted on 2017-01-21

314 Bayesian divergence-time estimation with genome-wide SNP data of sea catfishes (Ariidae) supports Miocene closure of the Panamanian Isthmus

Stange, M.; Sanchez-Villagra, M. R.; Salzburger, W.; Matschiner, M.

10.1101/102129 — evolutionary biology — Posted on 2017-01-21

315 Untangling cortical maps in mouse primary visual cortex

Jimenez, L. O.; Tring, E.; Trachtenberg, J. T.; Ringach, D. L.

10.1101/102079 — neuroscience — Posted on 2017-01-21

316 WikiGenomes: an open Web application for community consumption and curation of gene annotation data in Wikidata.

Putman, T. E.; Lelong, S.; Burgstaller-Muelhbacher, S.; Waagmeester, A.; Diesh, C.; Dunn, N.; Munoz-Torres, M.; Stupp, G.; Su, A.; Good, B. M.

10.1101/102046 — genomics — Posted on 2017-01-21

317 A hierarchical Bayesian approach to estimate endosymbiont infection rates

Marion, Z. H.; Hamm, C. A.

10.1101/102020 — evolutionary biology — Posted on 2017-01-21

318 Creation of gene expression database on preeclampsia-affected human placenta

Lykhenko, O.; Frolova, A.; Obolenska, M.

10.1101/102012 — bioinformatics — Posted on 2017-01-21

319 Glycolytic reliance promotes anabolism in photoreceptors

Chinchore, Y.; Begaj, T.; Wu, D.; Drokhlyansky, E.; Cepko, C. L.

10.1101/101964 — cell biology — Posted on 2017-01-21

320 Convection - Diffusion model of talking bacteria

Majumdar, S.; Mondal, S.

10.1101/101931 — biophysics — Posted on 2017-01-21

321 aRNApipe: A balanced, efficient and distributed pipeline for processing RNA-seq data in high performance computing environments

Alonso, A.; Lasseigne, B. N.; Williams, K.; Nielsen, J.; Ramaker, R. C.; Hardigan, A. A.; Johnston, B.; Roberts, B. S.; Cooper, S. J.; Marsal, S.; Myers, R. M.

10.1101/060277 — bioinformatics — Posted on 2017-01-20

322 A portable system for metagenomic analyses using nanopore-based sequencer and laptop computers can realize rapid on-site determination of bacterial compositions

Mitsuhashi, S.; Kryukov, K.; Nakagawa, S.; Takeuchi, J. S.; Shiraishi, Y.; Asano, K.; Imanishi, T.

10.1101/101865 — genomics — Posted on 2017-01-20

323 Rapid de novo assembly of the European eel genome from nanopore sequencing reads

Jansen, H. J.; Liem, M.; Jong-Raadsen, S. A.; Dufour, S.; Weltzien, F.-A.; Swinkels, W.; Koelewijn, A.; Palstra, A. P.; Pelster, B.; Spaink, H. P.; Van den Thillart, G. E.; Dirks, R. P.; Henkel, C. V.

10.1101/101907 — genomics — Posted on 2017-01-20

324 Revisiting suppression of interspecies hybrid malelethality in Caenorhabditis nematodes

Ryan, L. E.; Haag, E. S.

10.1101/102053 — genetics — Posted on 2017-01-20

325 Preserving microsatellites? Conservation genetics of the giant Galapagos tortoise.

Loire, E.; Galtier, N.

10.1101/101980 — evolutionary biology — Posted on 2017-01-20

326 Immune receptors with exogenous domain fusions form evolutionary hotspots in grass genomes

Bailey, P. C.; Dagdas, G.; Baggs, E.; Haerty, W.; Krasileva, K. V.

10.1101/100834 — evolutionary biology — Posted on 2017-01-20

327 Unraveling the population history of Indian Siddis

Das, R.; Upadhyai, P.

10.1101/101857 — evolutionary biology — Posted on 2017-01-20

328 The high burden of dengue and chikungunya in southern coastal Ecuador: Epidemiology, clinical presentation, and phylogenetics from a prospective study in Machala in 2014 and 2015

Stewart-Ibarra, A. M.; Kenneson, A.; King, C. A.; Abbott, M.; Barbachano-Guerrero, A.; Beltran-Ayala, E.; Borbor-Cordova, M. J.; Cardenas, W. B.; Cueva, C.; Finkelstein, J. L.; Lupone, C. D.; Jarman, R. G.; Maljkovic Berry, I.; Mehta, S.; Polhemus, M.; Silva, M.; Ryan, S. J.; Endy, T. P.

10.1101/102004 — epidemiology — Posted on 2017-01-20

329 Epidemiological and ecological determinants of Zika virus transmission in an urban setting.

Lourenco, J.; Maia de Lima, M.; Faria, N. R.; Walker, A.; Kraemer, M. U.; Villabona-Arenas, C. J.; Lambert, B.; Marques de Cerqueira, E.; Pybus, O. G.; Alcantara, L. C.; Recker, M.

10.1101/101972 — epidemiology — Posted on 2017-01-20

330 Designing the database for microarray experiments metadata

Lykhenko, O.; Frolova, A.; Obolenska, M.

10.1101/101956 — bioinformatics — Posted on 2017-01-20

331 DNA-dependent RNA cleavage by the Natronobacterium gregoryi Argonaute

Sunghyeok, Y.; Taegeun, B.; Kyoungmi, K.; Omer, H.; Seung Hwan, L.; Yoon Young, K.; Kang-In, L.; Seokjoong, K.; Jin-Soo, K.

10.1101/101923 — biochemistry — Posted on 2017-01-20

332 Interactive effects of shifting body size and feeding adaptation drive interaction strengths of protist predators under warming

Fussmann, K. E.; Rosenbaum, B.; Brose, U.; Rall, B. C.

10.1101/101675 — ecology — Posted on 2017-01-20

333 DeepScope: Nonintrusive Whole Slide Saliency Annotation and Prediction from Pathologists at the Microscope

Schaumberg, A. J.; Sirintrapun, S. J.; Al-Ahmadie, H. A.; Schueffler, P. J.; Fuchs, T. J.

10.1101/097246 — pathology — Posted on 2017-01-20

334 Symptoms of Depression in a Large Healthy Population Cohort are related to Subjective Memory Complaints and Memory Performance in Negative Contexts

Schweizer, S.; Kievit, R. A.; Emery, T.; Cam-CAN, ; Henson, R. N.

10.1101/101642 — neuroscience — Posted on 2017-01-20

335 Modelling haplotypes with respect to reference cohort variation graphs

Rosen, Y.; Eizenga, J.; Paten, B.

10.1101/101659 — genomics — Posted on 2017-01-20

336 The effect of dietary ginseng polysaccharide supplementation on the immune responses involved in porcine milk-derived esRNAs

SUN, J.; Yao, L.; Chen, T.; Xi, Q.; Zhang, Y.

10.1101/101592 — genomics — Posted on 2017-01-20

337 asymptoticMK: A web-based tool for the asymptotic McDonald-Kreitman test

Haller, B. C.; Messer, P. W.

10.1101/101808 — evolutionary biology — Posted on 2017-01-20

338 Rab5-mediated Yolk Cell Endocytosis modulates Zebrafish Epiboly Biomechanics and Tissue Movements

Marsal, M.; Hernandez-Vega, A.; Pouille, P.-A.; Martin-Blanco, E.

10.1101/097212 — developmental biology — Posted on 2017-01-20

339 A new and accurate continuum description of moving fronts

Johnston, S. T.; Baker, R. E.; Simpson, M. J.

10.1101/101824 — biophysics — Posted on 2017-01-20

340 Reduced foraging investment as an adaptation to patchy food sources: a phasic army ant simulation

Teseo, S.; Delloro, F.

10.1101/101600 — animal behavior and cognition — Posted on 2017-01-20

341 A Bayesian Perspective on Accumulation in the Magnitude System

Martin, B.; Wiener, M.; van Wassenhove, V.

10.1101/101568 — neuroscience — Posted on 2017-01-20

342 Comparison and Characterisation of Mutation Calling from Whole Exome and RNA Sequencing Data for Liver and Muscle Tissue in Lactating Holstein Cows Divergent for Fertility

Moran, B.; Butler, S. T.; Creevey, C. J.

10.1101/101733 — genomics — Posted on 2017-01-20

343 Cognitive task information is transferred between brain regions via resting-state network topology

Ito, T.; Kulkarni, K. R.; Schultz, D. H.; Mill, R. D.; Chen, R. H.; Solomyak, L. I.; Cole, M. W.

10.1101/101782 — neuroscience — Posted on 2017-01-19

344 Cognitive task information is transferred between brain regions via resting-state network topology

Ito, T.; Kulkarni, K. R.; Schultz, D. H.; Mill, R. D.; Chen, R. H.; Solomyak, L. I.; Cole, M. W.

10.1101/101782 — neuroscience — Posted on 2017-01-19

345 Mutation of a palmitoyltransferase ZDHHC18-like gene is responsible for the minute wing mutation in the silkworm (Bombyx mori)

Yu, Y.; Liu, X.; Ma, X.; Zhang, Z.; Liu, N.; Hou, C.; Li, M.

10.1101/101618 — molecular biology — Posted on 2017-01-19

346 Spike-based phylogenetically defined clades within the Alphacoronavirus 1 species

Whittaker, G. R.; Andre, N. M.; Millet, J. K.

10.1101/101774 — microbiology — Posted on 2017-01-19

347 Transmission Bottleneck Size Estimation from Pathogen Deep-Sequencing Data, with an Application to Human Influenza A Virus

Sobel Leonard, A.; Weissman, D.; Greenbaum, B.; Ghedin, E.; Koelle, K.

10.1101/101790 — microbiology — Posted on 2017-01-19

348 A scalable Bayesian method for integrating functional information in genome-wide association studies

Yang, J.; Fritsche, L. G.; Zhou, X.; Abecasis, G.; IAMDGC,

10.1101/101691 — genetics — Posted on 2017-01-19

349 Modern-Day SIV viral diversity generated by extensive recombination and cross-species transmission

Bell, S. M.; Bedford, T.

10.1101/101725 — evolutionary biology — Posted on 2017-01-19

350 Modeling Hormonal Control of Cambium Proliferation

Oles, V.; Panchenko, A.; Smertenko, A.

10.1101/101550 — bioinformatics — Posted on 2017-01-19

351 A comparison of reference-based algorithms for correcting cell-type heterogeneity in Epigenome-Wide Association Studies

Teschendorff, A. E.; Breeze, C. E.; Zheng, S. C.; Beck, S.

10.1101/101709 — bioinformatics — Posted on 2017-01-19

352 Real-time spike sorting platform for high-density extracellular probes with ground-truth validation and drift correction

Jun, J. J.; Mitelut, C.; Lai, C.; Gratiy, S.; Anastassiou, C.; Harris, T. D.

10.1101/101030 — neuroscience — Posted on 2017-01-19

353 Differential hemispheric and visual stream involvement in ensemble coding of emotion in facial crowds

Im, H. Y.; Albohn, D. N.; Steiner, T. G.; Cushing, C.; Adams, R. B.; Kveraga, K.

10.1101/101527 — neuroscience — Posted on 2017-01-19

354 Prevailing homozygous deletion of interferon and defensin genes in human cancers

Ye, Z.; Dong, H.; Li, Y.; Huang, H.; Liang, H.; Kocher, J.-P. A.; Wang, L.

10.1101/101741 — immunology — Posted on 2017-01-19

355 Moving Beyond Clinical Risk Scores with a Mobile App for the Genomic Risk of Coronary Artery Disease

Muse, E. D.; Wineinger, N. E.; Schrader, B.; Molparia, B.; Spencer, E. G.; Bodian, D. L.; Torkamani, A.; Topol, E. J.

10.1101/101519 — genomics — Posted on 2017-01-19

356 Novel insights into the molecular heterogeneity of hepatocellularcarcinoma

Jovel, J.; Lin, Z.; O'keefe, S.; Willows, S.; Wang, W.; Zhang, G.; Patterson, J.; Kelvin, D. J.; Wong, G. K.; Mason, A. L.

10.1101/101766 — cancer biology — Posted on 2017-01-19

357 Sequence features explain most of the mRNA stability variation across genes in yeast

Cheng, J.; Avsec, Z.; Gagneur, J.

10.1101/085522 — genomics — Posted on 2017-01-19

358 Myosin II activity is required for structural plasticity at the axon initial segment

Evans, M. D.; Tufo, C.; Dumitrescu, A. S.; Grubb, M. S.

10.1101/101584 — neuroscience — Posted on 2017-01-19

359 Long-term genomic coevolution of host-parasite interaction in natural environment

Laanto, E.; Hoikkala, V.; Ravantti, J.; Sundberg, L.-R.

10.1101/101576 — microbiology — Posted on 2017-01-19

360 The Drosophila Dosage Compensation Complex activates target genes by chromosome looping within the active compartment

Schauer, T.; Ghavi-Helm, Y.; Sexton, T.; Albig, C.; Regnard, C.; Cavalli, G.; Furlong, E. E. M.; Becker, P. B.

10.1101/101634 — genomics — Posted on 2017-01-19

361 A Data Citation Roadmap for Scientific Publishers

Cousijn, H.; Kenall, A.; Ganley, E.; Harrison, M.; Kernohan, D.; Murphy, F.; Polischuk, P.; Martone, M.; Clark, T.

10.1101/100784 — scientific communication and education — Posted on 2017-01-19

362 Industry-wide surveillance of Marek’s disease virus on commercial poultry farms

Kennedy, D. A.; Cairns, C.; Jones, M. J.; Bell, A. S.; Salathe, R. M.; Baigent, S. J.; Nair, V. K.; Dunn, P. A.; Read, A. F.

10.1101/075192 — epidemiology — Posted on 2017-01-19

363 DeepScope: Nonintrusive Whole Slide Saliency Annotation and Prediction from Pathologists at the Microscope

Schaumberg, A. J.; Sirintrapun, S. J.; Al-Ahmadie, H. A.; Schueffler, P. J.; Fuchs, T. J.

10.1101/097246 — pathology — Posted on 2017-01-19

364 Riparian ecosystem in the alpine connectome. Terrestrial-aquatic and terrestrial-terrestrial interactions in highelevation lakes

Zaharescu, D. G.; Palanca-Soler, A.; Hooda, P. S.; Tanase, C.; Burghelea, C. I.; Lester, R. N.

10.1101/035576 — ecology — Posted on 2017-01-19

365 Data Reuse as a Prisoner’s Dilemma: the social capital of open science

Alicea, B.

10.1101/093518 — scientific communication and education — Posted on 2017-01-19

366 A Computational Model of Perceptual and Mnemonic Deficits in Medial Temporal Lobe Amnesia

Sadil, P.; Cowell, R. R. A.

10.1101/082628 — neuroscience — Posted on 2017-01-19

367 Direction of actin flow dictates integrin LFA-1 orientation during leukocyte migration

Nordenfelt, P.; Moore, T. I.; Mehta, S. B.; Kalappurakkal, J. M.; Swaminathan, V.; Koga, N.; Lambert, T. J.; Baker, D.; Waters, J. C.; Oldenbourg, R.; Tani, T.; Mayor, S.; Waterman, C. M.; Springer, T. A.

10.1101/071936 — cell biology — Posted on 2017-01-19

368 Stochastic Assembly Produces Heterogeneous Communities in the C. elegans Intestine

Vega, N.; Gore, J.

10.1101/067173 — microbiology — Posted on 2017-01-19

369 Recurrent promoter mutations in melanoma are defined by an extended context-specific mutational signature

Fredriksson, J.; Eliot, K.; Filges, S.; Stahlberg, A.; Larsson, E.

10.1101/069351 — genomics — Posted on 2017-01-19

370 DNA methylation differences at regulatory elements are associated with the cancer risk factor age in normal breast tissue

Johnson, K. C.; Houseman, E. A.; King, J. E.; Christensen, B. C.

10.1101/101287 — epidemiology — Posted on 2017-01-19

371 The shape of the contact-density function matters when modelling disease transmission in fluctuating populations

Borremans, B.; Reijniers, J.; Hens, N.; Leirs, H.

10.1101/101535 — epidemiology — Posted on 2017-01-19

372 An efficient Bayesian meta-analysis approach for studying cross-phenotype genetic associations

Majumdar, A.; Haldar, T.; Bhattacharya, S.; Witte, J.

10.1101/101543 — genetics — Posted on 2017-01-19

373 Behavioral responses of household ants (Hymenoptera) to odor of different coffee species and formulations: Sustainability approach for green pest management strategies

Ab Majid, A. H.; Ellias, S. S.; Dieng, H.; Satho, T.

10.1101/101303 — zoology — Posted on 2017-01-18

374 Predicted sensory consequences of voluntary actions modulate amplitude and temporal dynamics of preceding readiness potentials

Reznik, D.; Simon, S.; Mukamel, R.

10.1101/101402 — neuroscience — Posted on 2017-01-18

375 Experience-induced forgetting by WT1 enables learning of sequential tasks.

Mariottini, C.; Munari, L.; Gunzel, E.; Seco, J.; Tzavaras, N.; Hansen, J.; Stern, S.; Gao, V.; Hodes, G.; Russo, S.; Huff, V.; Birtwistle, M.; Alberini, C.; Blitzer, R.; Iyengar, R.

10.1101/101360 — neuroscience — Posted on 2017-01-18

376 Modern human origins: multiregional evolution of autosomes and East Asia origin of Y and mtDNA

Yuan, D.; Lei, X.; Gui, Y.; Zhu, Z.; Wang, D.; Yu, J.; Huang, S.

10.1101/101410 — evolutionary biology — Posted on 2017-01-18

377 HiCRep: assessing the reproducibility of Hi-C data using a stratum-adjusted correlation coefficient

Yang, T.; Zhang, F.; Yardimci, G. G.; Hardison, R. C.; Noble, W. S.; Yue, F.; Li, Q.

10.1101/101386 — bioinformatics — Posted on 2017-01-18

378 A Flow Procedure for the Linearization of Genome Sequence Graphs.

Haussler, D.; Smuga-Otto, M.; Paten, B.; Novak, A. M.; Nikitin, S.; Zueva, M.; Miagkov, D.

10.1101/101501 — bioinformatics — Posted on 2017-01-18

379 Fragile dynamics enable diverse genomic determinants to influence arrhythmia propensity

Kamerzell, T. J.; Sobie, E. A.; Yang, K.-C.; Nerbonne, J. M.; MacRae, C. A.; Iyengar, R.

10.1101/101162 — systems biology — Posted on 2017-01-18

380 Non-parametric test for connectivity detection in multivariate autoregressive networks and application to multiunit activity data

Gilson, M.; Tauste Campo, A.; Thiele, A.; Deco, G.

10.1101/100669 — neuroscience — Posted on 2017-01-18

381 Brain reorganization in anticipation of predictable words

Skipper, J. I.; Zevin, J. D.

10.1101/101113 — neuroscience — Posted on 2017-01-18

382 Targeted gene correction of FKRP by CRISPR/Cas9 restores functional glycosylation of α-dystroglycan in cortical neurons derived from human induced pluripotent stem cells

Lana, B.; Kim, J.; Ryan, D.; Konstantinidis, E.; Louzada, S.; Fu, B.; Yang, F.; Stemple, D. L.; Liu, P.; Muntoni, F.; Lin, Y.-Y.

10.1101/101352 — molecular biology — Posted on 2017-01-18

383 The most efficient microbial community dominates during community coalescence

Sierocinski, P.; Milferstedt, K.; Bayer, F.; Grosskopf, T.; Alston, M.; Bastkowski, S.; Swarbreck, D.; Hobbs, P. J.; Soyer, O. S.; Hamelin, J.; Buckling, A.

10.1101/101436 — microbiology — Posted on 2017-01-18

384 Muscle transcriptome analysis reveals molecular pathways and biomarkers involved in extreme ultimate pH and meat defect occurrence in chicken

Beauclercq, S.; Hennequet-Antier, C.; Praud, C.; Godet, E.; Collin, A.; Tesseraud, S.; Metayer-Coustard, S.; Bourin, M.; Moroldo, M.; Martins, F.; Lagarrigue, S.; Le Bihan-Duval, E.; Berri, C.

10.1101/101170 — genomics — Posted on 2017-01-18

385 The stress-inducible peroxidase TSA2 enables Chromosome IV duplication to be conditionally beneficial in Saccharomyces cerevisiae

Linder, R. A.; Greco, J. P.; Seidl, F.; Matsui, T.; Ehrenreich, I. M.

10.1101/101139 — genetics — Posted on 2017-01-18

386 Warburg-like metabolism coordinates FGF and Wnt signaling in the vertebrate embryo

Oginuma, M.; Moncuquet, P.; Xiong, F.; Karoly, E.; Chal, J.; Guevorkian, K.; Pourquie, O.

10.1101/101451 — developmental biology — Posted on 2017-01-18

387 Non-viral induction of transient cell reprogramming in skeletal muscle to enhance tissue regeneration

de Lazaro, I.; Yilmazer, A.; Nam, Y.; Qubisi, S.; Maizatul Abdul Razak, F.; Cossu, G.; Kostarelos, K.

10.1101/101188 — developmental biology — Posted on 2017-01-18

388 Integrated time-lapse and single-cell transcription studies highlight the variable and dynamic nature of human hematopoietic cell fate commitment.

Moussy, A.; Cosette, J.; Parmentier, R.; da Silva, C.; Corre, G.; Richard, A.; Gandrillon, O.; Stockholm, D.; Paldi, A.

10.1101/101428 — cell biology — Posted on 2017-01-18

389 Tracking multiple genomic elements using correlative CRISPR imaging and sequential DNA FISH

Guan, J.; Liu, H.; Shi, X.; Feng, S.; Huang, B.

10.1101/101444 — biophysics — Posted on 2017-01-18

390 Quality Assessment of High-throughput DNA Sequencing Data via Range analysis

Kulekci, M. O.; Fotouhi, A.; Majidi, M.

10.1101/101469 — bioinformatics — Posted on 2017-01-18

391 Genome Graphs

Novak, A. M.; Hickey, G.; Garrison, E.; Blum, S.; Connelly, A.; Dilthey, A.; Eizenga, J.; Elmohamed, M. A. S.; Guthrie, S.; Kahles, A.; Keenan, S.; Kelleher, J.; Kural, D.; Li, H.; Lin, M. F.; Miga, K.; Ouyang, N.; Rakocevic, G.; Smuga-Otto, M.; Zaranek, A. W.; Durbin, R.; McVean, G.; Haussler, D.; Paten, B.

10.1101/101378 — bioinformatics — Posted on 2017-01-18

392 Superbubbles, Ultrabubbles and Cacti

Paten, B.; Novak, A. M.; Garrison, E.; Hickey, G.

10.1101/101493 — bioinformatics — Posted on 2017-01-18

393 Uniform Resolution of Compact Identifiers for Biomedical Data

Wimalaratne, S.; Juty, N.; Kunze, J.; Janee, G.; McMurry, J. A.; Beard, N.; Jimenez, R.; Grethe, J.; Hermjakob, H.; Clark, T.

10.1101/101279 — bioinformatics — Posted on 2017-01-18

394 Structural and functional dissection of the interplay between lipid and Notch binding by human Notch ligands

Suckling, R.; Korona, B.; Whiteman, P.; Chillakuri, C.; Holt, L.; Handford, P.; Lea, S.

10.1101/101394 — biochemistry — Posted on 2017-01-18

395 Visual memories are stored along a compressed timeline

Singh, I.; Oliva, A.; Howard, M.

10.1101/101295 — animal behavior and cognition — Posted on 2017-01-18

396 Multiplexed dynamic imaging of genomic loci in single cells by combined CRISPR imaging and DNA sequential FISH

Takei, Y.; Shah, S.; Harvey, S.; Qi, L. S.; Cai, L.

10.1101/101477 — systems biology — Posted on 2017-01-18

397 New insight into plant intramembrane proteases

Adamiec, M.; Misztal, L. H.; Lucinski, R.

10.1101/101204 — plant biology — Posted on 2017-01-18

398 Efficient and flexible strategies for gene cloning and vector construction using overlap PCR

Liu, Z.; Zhang, T.; Xu, K.

10.1101/101147 — molecular biology — Posted on 2017-01-18

399 Novel Abundant Oceanic Viruses of Uncultured Marine Group II Euryarchaeota Identified by Genome-Centric Metagenomics

Philosof, A.; Yutin, N.; Flores-Uribe, J.; Sharon, I.; Koonin, E. V.; Beja, O.

10.1101/101196 — microbiology — Posted on 2017-01-18

400 Towards a new kind of vaccine

Hoffmann, G. W.; Gorczynski, R. M.

10.1101/101345 — immunology — Posted on 2017-01-18

401 Identification of genetic variants affecting vitamin D receptor binding and associations with autoimmune disease

Gallone, G.; Haerty, W.; Disanto, G.; Ramagopalan, S.; Ponting, C. P.; Berlanga-Taylor, A. J.

10.1101/080143 — genomics — Posted on 2017-01-18

402 Systematic analysis of the effects of the DNA damage response network in telomere defective budding yeast

Holstein, E.-M.; Ngo, G. H.; Lawless, C.; Banks, A. P.; Greetham, M.; Wilkinson, D. J.; Lydall, D.

10.1101/101253 — genetics — Posted on 2017-01-18

403 Research on Mitochondrial DNA Mutations in Patients with SCA3/MJD

Wang, J.; Liu, Z.; Zhou, J.; Yin, X.; Shi, S.; Sun, W.; Jiang, H.; Shen, L.; Tang, B.

10.1101/101238 — genetics — Posted on 2017-01-18

404 Evolution of Reduced Co-Activator Dependence Led to Target Expansion of a Starvation Response Pathway

He, B. Z.; Zhou, X.; O'Shea, E.

10.1101/101154 — evolutionary biology — Posted on 2017-01-18

405 Cone-like rhodopsin expressed in the all cone retina of the colubrid pine snake as a potential adaptation to diurnality

Bhattacharyya, N.; Darren, B.; Schott, R. K.; Tropepe, V.; Chang, B.

10.1101/100792 — evolutionary biology — Posted on 2017-01-18

406 The multiplex network of human diseases

Halu, A.; De Domenico, M.; Arenas, A.; Sharma, A.

10.1101/100370 — bioinformatics — Posted on 2017-01-18

407 Promoter-Enhancer Interactions Identified from Hi-C Data using Probabilistic Models and Hierarchical Topological Domains

Ron, G.; Moran, D.; Kaplan, T.

10.1101/101220 — bioinformatics — Posted on 2017-01-18

408 Automated Detection of Records in Biological Sequence Databases that are Inconsistent with the Literature

Bouadjenek, M. R.; Verspoor, K.; Zobel, J.

10.1101/101246 — bioinformatics — Posted on 2017-01-18

409 Homozygous loss of autism-risk gene CNTNAP2 results in reduced local and long-range prefrontal functional connectivity

Liska, A.; Bertero, A.; Gomolka, R.; Sabbioni, M.; Galbusera, A.; Barsotti, N.; Panzeri, S.; Scattoni, M. L.; Pasqualetti, M.; Gozzi, A.

10.1101/060335 — neuroscience — Posted on 2017-01-18

410 Functional regulatory evolution outside of the minimal even-skipped stripe 2 enhancer

Crocker, J.; Stern, D. L.

10.1101/101311 — developmental biology — Posted on 2017-01-18

411 Early transcriptome response to brown streak virus infection in susceptible and resistant cassava varieties

Anjanappa, R. B.; Mehta, D.; Okoniewski, M. J.; Szabelska, A.; Gruissem, W.; Vanderschuren, H.

10.1101/100552 — plant biology — Posted on 2017-01-18

412 Reporting correct p-values in VEGAS analyses

Hecker, J.; Maaser, A.; Prokopenko, D.; Fier, H.; Lange, C.

10.1101/101014 — genetics — Posted on 2017-01-18

413 Exploring evolutionary relationships across the genome using topology weighting

Martin, S. H.; Van Belleghem, S. M.

10.1101/069112 — evolutionary biology — Posted on 2017-01-18

414 Experimental evolution reveals a novel avenue to release catabolite repression via mutations in XylR

Sievert, C.; Nieves, L. M.; Panyon, L. A.; Loeffler, T.; Morris, C.; Cartwright, R. A.; Wang, X.

10.1101/100602 — bioengineering — Posted on 2017-01-18

415 Distributed Biotin-Streptavidin Transcription Roadblocks for Mapping Cotranscriptional RNA Folding

Strobel, E. J.; Watters, K. E.; Lucks, J.

10.1101/100073 — molecular biology — Posted on 2017-01-18

416 Genome-wide association study in Collaborative Cross mice reveals a role for Rhbdf2 in skeletal homeostasis

Levy, R.; Levet, C.; Cohen, K.; Freeman, M.; Mott, R.; Iraqi, F.; Gabet, Y.

10.1101/094698 — genetics — Posted on 2017-01-18

417 Representational models: A common framework for understanding encoding, pattern-component, and representational-similarity analysis

Diedrichsen, J.; Kriegeskorte, N.

10.1101/071472 — neuroscience — Posted on 2017-01-18

418 Stem cell differentiation is a stochastic process with memory

Stumpf, P. S.; Smith, R. C. G.; Lenz, M.; Schuppert, A.; Muller, F.-J.; Babtie, A.; Chan, T. E.; Stumpf, M. P. H.; Please, C. P.; Howison, S. D.; Arai, F.; MacArthur, B. D.

10.1101/101048 — systems biology — Posted on 2017-01-17

419 Demonstration of short-term plasticity in the dorsolateral prefrontal cortexwith theta burst stimulation: A TMS-EEG study

Chung, S. W.; Lewis, B.; Rogasch, N.; Saeki, T.; Thomson, R.; Hoy, K.; Bailey, N.; Fitzgerald, P.

10.1101/101097 — neuroscience — Posted on 2017-01-17

420 Evolutionary capacitance emerges spontaneously during adaptation to environmental changes

Nelson, P. G.; Masel, J. G.

10.1101/101055 — evolutionary biology — Posted on 2017-01-17

421 Early transcriptome response to brown streak virus infection in susceptible and resistant cassava varieties

Anjanappa, R. B.; Mehta, D.; Okoniewski, M. J.; Szabelska, A.; Gruissem, W.; Vanderschuren, H.

10.1101/100552 — plant biology — Posted on 2017-01-17

422 On the relationship between psychopathy and general intelligence: A meta-analytic review

Sanchez de Ribera, O.; Kavish, N.; Boutwell, B.

10.1101/100693 — neuroscience — Posted on 2017-01-17

423 Neural precursors of decisions that matter--an ERP study of deliberate and arbitrary choice

Maoz, U.; Yaffe, G.; Koch, C.; Mudrik, L.

10.1101/097626 — neuroscience — Posted on 2017-01-17

424 Phylogenomic Synteny Network Analysis Reveals an Ancient MADS-Box Transcription Factor Tandem Duplication and Lineage-Specific Transpositions

Zhao, T.; Holmer, R.; de Bruijn, S.; van den Burg, H. A.; Schranz, M. E.

10.1101/100990 — genomics — Posted on 2017-01-17

425 Biochemical, serological and molecular confirmation of Salmonella isolates

Kumar V., P.; Singh, S. P.; Upadhyay, A. K.; Kumar, D.

10.1101/100917 — microbiology — Posted on 2017-01-17

426 Reporting correct p-values in VEGAS analyses

Hecker, J.; Prokopenko, D.; Fier, H.; Lange, C.

10.1101/101014 — genetics — Posted on 2017-01-17

427 Early transcriptome response to brown streak virus infection in susceptible and resistant cassava varieties

Anjanappa, R. B.; Mehta, D.; Okoniewski, M. J.; Szabelska, A.; Gruissem, W.; Vanderschuren, H.

10.1101/100552 — plant biology — Posted on 2017-01-17

428 Pebbles as Dry Ice Replacement for Snap Freezing of Rodents Brains

Bernard, R.; Mosch, L.; Dirnagl, U.

10.1101/100776 — neuroscience — Posted on 2017-01-17

429 On the relationship between psychopathy and general intelligence: A meta-analytic review

Sanchez de Ribera, O.; Kavish, N.; Boutwell, B.

10.1101/100693 — neuroscience — Posted on 2017-01-17

430 New kids on the block: Intercontinental dissemination and transmission of newly emerging lineages of multi-drug resistant Escherichia coli with highly dynamic resistance gene acquisition.

Zong, Z.; Yu, F.; McNally, A.

10.1101/100941 — microbiology — Posted on 2017-01-17

431 Chromosome contacts in activated T cells identify autoimmune disease-candidate genes

Burren, O. S.; Rubio Garcia, A.; Javierre, B.-M.; Rainbow, D. B.; Cairns, J.; Cooper, N. J.; Lambourne, J. J.; Schofield, E.; Dopico, X. C.; Ferreira, R. C.; Coulson, R.; Burden, F.; Rowlston, S. P.; Downes, K.; Wingett, S. W.; Frontini, M.; Ouwehand, W. H.; Fraser, P.; Spivakov, M.; Todd, J. A.; Wicker, L. S.; Cutler, A. J.; Wallace, C.

10.1101/100958 — genomics — Posted on 2017-01-17

432 ARCS: Assembly Roundup by Chromium Scaffolding

Yeo, S.; Coombe, L.; Chu, J.; Warren, R. L.; Birol, I.

10.1101/100750 — genomics — Posted on 2017-01-17

433 MCF-7 breast cancer cell line PacBio generated transcriptome has ~300 novel transcribed regions, un-annotated in both RefSeq and GENCODE, and absent in the liver, heart and brain transcriptomes

Chakraborty, S.

10.1101/100974 — genomics — Posted on 2017-01-17

434 Signs of host genetic regulation in the microbiome composition in cattle

Gonzalez-Recio, O.; Zubiria, I.; Garcia-Rodriguez, A.; Hurtado, A.; Atxaerandio, R.

10.1101/100966 — genomics — Posted on 2017-01-17

435 Transcriptome analysis of genetically matched human induced pluripotent stem cells disomic or trisomic for chromosome 21.

Gonzales, P. K.; Fonte, V.; Roberts, C. M.; Jacobsen, C.; Stein, G. H.; Link, C. D.

10.1101/100859 — genetics — Posted on 2017-01-17

436 Structural-mechanical remodelling of GDP-microtubules by kinesin

Peet, D. R.; Burroughs, N. J.; Cross, R. A.

10.1101/101022 — biophysics — Posted on 2017-01-17

437 Emergence of localized patterns in globally coupled networks of relaxation oscillators with heterogeneous connectivity

Leiser, R. J.; Rotstein, H. G.

10.1101/100933 — biochemistry — Posted on 2017-01-17

438 Internal modifications in the CENP-A nucleosome modulate centromeric dynamics

Bui, M.; Pitman, M.; Nuccio, A.; Roque, S.; Donlin-Asp, P. G.; Nita-Lazar, A.; Papoian, G. A.; Dalal, Y.

10.1101/101006 — biochemistry — Posted on 2017-01-17

439 A Change-point Analysis Method for Single-trial Study of Simultaneous EEG-fMRI of Auditory/Visual Oddball Task

Dizaji, A. S.; Soltanian-Zadeh, H.

10.1101/100487 — neuroscience — Posted on 2017-01-17

440 Valence biases factual and counterfactual learning in opposite directions

Palminteri, S.; Lefebvre, G.; Kilford, E. J.; Blakemore, S.-J.

10.1101/090654 — neuroscience — Posted on 2017-01-17

441 A DNA-based T cell receptor reveals a role for receptor clustering in ligand discrimination

Taylor, M. J.; Husain, K.; Gartner, Z. J.; Mayor, S.; Vale, R. D.

10.1101/062877 — immunology — Posted on 2017-01-17

442 Age-dependent changes in mean and variance of gene expression across tissues in a twin cohort

Vinuela, A.; Brown, A. A.; Buil, A.; Tsai, P.-C.; Davies, M. N.; Bell, J. T.; Dermitzakis, E.; Spector, T.; Small, K.

10.1101/063883 — genomics — Posted on 2017-01-17

443 Homology- and coevolution-consistent structural models of bacterial copper-tolerance protein CopM support a ‘metal sponge’ function and suggest regions for metal-dependent protein-protein interactions

Abriata, L. A.

10.1101/013581 — biochemistry — Posted on 2017-01-17

444 Analysis of copy number variants on chromosome 21 in Down syndrome-associated congenital heart defects

Rambo-Martin, B. L.; Mulle, J. G.; Cutler, D. J.; Bean, L. J. H.; Rosser, T. C.; Dooley, K. J.; Cua, C.; Capone, G.; Maslen, C. L.; Reeves, R. H.; Sherman, S. L.; Zwick, M. E.

10.1101/093583 — genomics — Posted on 2017-01-17

445 Spatial point pattern analysis of prehospital naloxone administrations

Ryan, C.

10.1101/100412 — epidemiology — Posted on 2017-01-17

446 Evaluating hybridization capture with RAD probes as a tool for museum genomics with historical bird specimens

Linck, E. B.; Hanna, Z.; Sellas, A.; Dumbacher, J. P.

10.1101/100867 — genomics — Posted on 2017-01-16

447 Simplified Power Calculations for Aggregate-level Association Tests Provide Insights to Challenges for Rare Variant Association Studies

Derkach, A.; Zhang, H.; Chatterjee, N.

10.1101/100891 — bioinformatics — Posted on 2017-01-16

448 Excessive ERK-dependent synaptic clustering with enhanced motor learning in the MECP2 duplication syndrome mouse model of autism

Ash, R. T.; Buffington, S. A.; Park, J.; Costa-Mattioli, M.; Zoghbi, H. Y.; Smirnakis, S. M.

10.1101/100875 — neuroscience — Posted on 2017-01-16

449 Heritability of the Symbiodinium community in vertically- and horizontally-transmitting broadcast spawning corals

Quigley, K.; Willis, B.; Bay, L.

10.1101/100453 — molecular biology — Posted on 2017-01-16

450 Histological and haematological analysis of the ascidian Botrylloides leachii (Savigny, 1816) during whole-body regeneration

Blanchoud, S.; Zondag, L.; Lamare, M. K.; Wilson, M. J.

10.1101/099580 — cell biology — Posted on 2017-01-16

451 Effects of altered excitation-inhibition balance on decision making in a cortical circuit model

Lam, N. H.; Borduqui, T.; Hallak, J.; Roque, A. C.; Anticevic, A.; Krystal, J. H.; Wang, X.-J.; Murray, J. D.

10.1101/100347 — neuroscience — Posted on 2017-01-16

452 Genome-wide association study in Collaborative Cross mice reveals a role for Rhbdf2 in skeletal homeostasis

Levy, R.; Levet, C.; Cohen, K.; Freeman, M.; Mott, R.; Iraqi, F.; Gabet, Y.

10.1101/094698 — genetics — Posted on 2017-01-16

453 Cone-like rhodopsin expressed in the all cone retina of the colubrid pine snake as a potential adaptation to diurnality

Chang, B.; Bhattacharyya, N.; Darren, B.; Schott, R. K.; Tropepe, V.

10.1101/100792 — evolutionary biology — Posted on 2017-01-16

454 Maintenance of Polymorphism in Spatially Heterogeneous Environments: An Experimental Test of Hard and Soft Selection

Gallet, R.; Froissart, R.; Ravigne, V.

10.1101/100743 — evolutionary biology — Posted on 2017-01-16

455 Oxytocin enhances intrinsic corticostriatal functional connectivity in women

Bethlehem, R. A. I.; Lombardo, M. V.; Lai, M.-C.; Auyeung, B.; Crockford, S.; Deakin, J.; Soubramanian, S.; Sule, A.; Kundu, P.; Voon, V.; Baron-Cohen, S.

10.1101/068585 — neuroscience — Posted on 2017-01-16

456 Rapid cerebrovascular reactivity mapping: Enabling vascular reactivity information to be routinely acquired

Blockley, N. P.; Harkin, J. W.; Bulte, D. P.

10.1101/094359 — neuroscience — Posted on 2017-01-16

457 Effects of altered excitation-inhibition balance on decision making in a cortical circuit model

Lam, N. H.; Borduqui, T.; Hallak, J.; Roque, A. C.; Anticevic, A.; Krystal, J. H.; Wang, X.-J.; Murray, J. D.

10.1101/100347 — neuroscience — Posted on 2017-01-16

458 The RAG transposon is active through the deuterostome evolution and domesticated in jawed vertebrates.

Poole, J. R.; Huang, S. F.; Xu, A. L.; Pierre, P.

10.1101/100735 — immunology — Posted on 2017-01-16

459 Genetic diagnosis of Mendelian disorders via RNA sequencing

Kremer, L. S.; Bader, D. M.; Mertes, C.; Kopajtich, R.; Pichler, G.; Iuso, A.; Haack, T. B.; Graf, E.; Schwarzmayr, T.; Terrile, C.; Konafikova, E.; Repp, B.; Kastenmuller, G.; Adamski, J.; Lichtner, P.; Leonhardt, C.; Funalot, B.; Donati, A.; Tiranti, V.; Lombes, A.; Jardel, C.; Glaser, D.; Taylor, R. W.; Ghezzi, D.; Mayr, J. A.; Rotig, A.; Freisinger, P.; Distelmaier, F.; Strom, T. M.; Meitinger, T.; Gagneur, J.; Prokisch, H.

10.1101/066738 — genetics — Posted on 2017-01-16

460 Genome-wide association study in Collaborative Cross mice reveals a role for Rhbdf2 in skeletal homeostasis

Levy, R.; Levet, C.; Cohen, K.; Freeman, M.; Mott, R.; Iraqi, F.; Gabet, Y.

10.1101/094698 — genetics — Posted on 2017-01-16

461 Genome-wide chemical mutagenesis screens allow unbiased saturation of the cancer genome and identification of drug resistance mutations.

Brammeld, J.; Petljak, M.; Robles-Espinoza, C. D.; Price, S.; Barthorpe, S.; Tarpey, P.; Alifrangis, C.; Bignell, G.; Garnett, M.; Young, J.; Stebbings, L.; Beal, K.; Stratton, M. R.; Montagut, C.; Dalmases, A.; Bellosillo, B.; Vidal, J.; Saez-Rodriguez, J.; Alonso, L. G.; Iorio, F.; McDermott, U.

10.1101/066555 — genetics — Posted on 2017-01-16

462 Going down the rabbit hole: a review on methods for population genomics in natural populations

Bourgeois, Y.; Hazzouri, K. M.

10.1101/052761 — evolutionary biology — Posted on 2017-01-16

463 Mining human prostate cancer datasets: The "camcAPP" shiny app

Dunning, M. J.; Vowler, S. L.; Lalonde, E.; Ross-Adams, H.; Mills, I. G.; Lynch, A. G.; Lamb, A. D.

10.1101/090589 — cancer biology — Posted on 2017-01-16

464 Applying meta-analysis to Genotype-Tissue Expression data from multiple tissues to identify eQTLsand increase the number of eGenes

Duong, D.

10.1101/100701 — bioinformatics — Posted on 2017-01-16

465 Associative Learning from Replayed Experience

Ludvig, E. A.; Mirian, M. S.; Kehoe, E. J.; Sutton, R. S.

10.1101/100800 — animal behavior and cognition — Posted on 2017-01-16

466 The leading-edge vortex of swift wings

Muir, R. E.; Viola, I. M.

10.1101/099713 — physiology — Posted on 2017-01-16

467 A Change-point Analysis Method for Single-trial Study of Simultaneous EEG-fMRI of Auditory/Visual Oddball Task

Dizaji, A. S.; Soltanian-Zadeh, H.

10.1101/100487 — neuroscience — Posted on 2017-01-16

468 The design principles of biochemical timers: circuits that discriminate between transient and sustained stimulation

Gerardin, J.; Lim, W. A.

10.1101/100651 — systems biology — Posted on 2017-01-15

469 Transcriptional repression by ApiAP2 factors is central to chronic toxoplasmosis

Radke, J. B.; Worth, D.; Hong, D.-P.; Huang, S.; Sullivan, W. J.; Wilson, E. H.; White, M.

10.1101/100628 — microbiology — Posted on 2017-01-15

470 Experimental evolution reveals a novel avenue to release catabolite repression via mutations in XylR

Sievert, C.; Nieves, L. M.; Panyon, L. A.; Loeffler, T.; Morris, C.; Cartwright, R. A.; Wang, X.

10.1101/100602 — bioengineering — Posted on 2017-01-15

471 A systematic comparison of error correction enzymes by next-generation sequencing

Lubock, N. B.; Zhang, D.; Church, G. M.; Kosuri, S.

10.1101/100685 — synthetic biology — Posted on 2017-01-15

472 A lineage-related reciprocal inhibition circuitry for sensory-motor action selection

Kottler, B.; Fiore, V. G.; Ludlow, Z. N.; Buhl, E.; Vinatier, G.; Faville, R.; Diaper, D. C.; Stepto, A.; Dearlove, J.; Adachi, Y.; Brown, S.; Chen, C.; Solomon, D. A.; White, K. E.; Humphrey, D. M.; Buchanan, S. M.; Sigrist, S. J.; Endo, K.; Ito, K.; de Bivort, B.; Stanewsky, R.; Dolan, R. J.; Martin, J.-R.; Hodge, J. J.; Strausfeld, N. J.; Hirth, F.

10.1101/100420 — neuroscience — Posted on 2017-01-15

473 Transposons modulate transcriptomic and phenotypic variation via the formation of circular RNAs in maize

Chen, L.; Zhang, P.; Fan, Y.; Huang, J.; Lu, Q.; Li, Q.; Yan, J.; Muehlbauer, G. J.; Schnable, P. S.; Dai, M.; Li, L.

10.1101/100578 — genomics — Posted on 2017-01-15

474 Long-term sustained malaria control leads to inbreeding and fragmentation of Plasmodium vivax populations

Waltmann, A.; Koepfli, C.; Tessier, N.; Karl, S.; Darcy, A.; Wini, L.; Harrison, G. L. A.; Barnadas, C.; Jennison, C.; Karunajeewa, H.; Boyd, S.; Whittaker, M.; Kazura, J.; Bahlo, M.; Mueller, I.; Barry, A. E.

10.1101/100610 — epidemiology — Posted on 2017-01-15

475 Computer-Assisted Engineering of Hyperstable Fibroblast Growth Factor 2

Dvorak, P.; Bednar, D.; Vanacek, P.; Balek, L.; Eiselleova, L.; Stepankova, V.; Sebestova, E.; Kunova Bosakova, M.; Konecna, Z.; Mazurenko, S.; Kunka, A.; Horak, D.; Chaloupkova, R.; Brezovky, J.; Krejci, P.; Prokop, Z.; Dvorak, P.; Damborsky, J.

10.1101/100636 — bioengineering — Posted on 2017-01-15

476 Dynamic representation of time in brain states

Bueno, F. D.; Morita, V. C.; Camargo, R. Y.; Reyes, M. B.; Caetano, M. S.; Cravo, A. M.

10.1101/069278 — neuroscience — Posted on 2017-01-15

477 Accounting for GC-content bias reduces systematic errors and batch effects in ChIP-Seq data

Teng, M.; Irizarry, R. A.

10.1101/090704 — genomics — Posted on 2017-01-15

478 Re-evaluation of SNP heritability in complex human traits

Speed, D.; Cai, N.; The UCLEB Consortium, ; Johnson, M.; Nejentsev, S.; Balding, D.

10.1101/074310 — genetics — Posted on 2017-01-15

Buckley, R. M.; Kortschak, R. D.; Raison, J. M.; Adelson, D. L.

10.1101/091652 — evolutionary biology — Posted on 2017-01-15

480 Long-term sustained malaria control leads to inbreeding and fragmentation of Plasmodium vivax populations

Waltmann, A.; Koepfli, C.; Tessier, N.; Karl, S.; Darcy, A.; Wini, L.; Harrison, G. L. A.; Barnadas, C.; Jannison, C.; Karunajeewa, H.; Boyd, S.; Whittaker, M.; Kazura, J.; Bahlo, M.; Mueller, I.; Barry, A. E.

10.1101/100610 — epidemiology — Posted on 2017-01-15

481 Selectivity matters: rules of thumb for management of plate-sized, sex-changing fish in the live reef food fish trade

Kindsvater, H.; Reynolds, J. D.; Sadovy de Mitcheson, Y.; Mangel, M.

10.1101/098624 — ecology — Posted on 2017-01-15

482 Altered topology of neural circuits in congenital prosopagnosia

Rosenthal, G.; Tanzer, M.; Simony, E.; Hasson, U.; Behrmann, M.; Avidan, G.

10.1101/100479 — neuroscience — Posted on 2017-01-15

483 Comprehensive characterization of neutrophil genome topology

Zhu, Y.; Gong, K.; Denholtz, M.; Chandra, V.; Kamps, M. P.; Alber, F.; Murre, C.

10.1101/100198 — molecular biology — Posted on 2017-01-15

484 Telomere elongation and Telomerase activity in Normal and Cancer cell lines: HEK-293, HeLa and A549

Patel, A.; Joshi, G.; Fu, Y.; Shaju, S.; Messina, A.

10.1101/100446 — molecular biology — Posted on 2017-01-15

485 Darwin: A Hardware-acceleration Framework for Genomic Sequence Alignment

Turakhia, Y.; Zheng, K. J.; Bejerano, G.; Dally, W. J.

10.1101/092171 — genomics — Posted on 2017-01-15

486 Tunable Genotyping-By-Sequencing (tGBS(R)) Enables Reliable Genotyping of Heterozygous Loci

Ott, A.; Liu, S.; Schnable, J. C.; Yeh, C.-T.; Wang, C.; Schnable, P. S.

10.1101/100461 — genomics — Posted on 2017-01-15

487 Ancient duplication and horizontal transfer of a toxin gene cluster reveals novel mechanisms in the cercosporin biosynthesis pathway

de Jonge, R.; Ebert, M. K.; Huitt-Roehl, C. R.; Pal, P.; Suttle, J. C.; Neubauer, J. D.; Jurick, W. M.; Secor, G. A.; Thomma, B. P.; Van de Peer, Y.; Townsend, C. A.; Bolton, M. D.

10.1101/100545 — evolutionary biology — Posted on 2017-01-15

488 Senescence associated protein degradation

Ferbeyre, G.

10.1101/100388 — cell biology — Posted on 2017-01-15

489 The 3D genome organization of Drosophila melanogaster through data integration

Li, Q.; Tjong, H.; Li, X.; Gong, K.; Zhou, X. J.; Chiolo, I.; Alber, F.

10.1101/099911 — bioinformatics — Posted on 2017-01-15

490 Single-cell histories in growing populations: relating physiological variability to population growth

Thomas, P.

10.1101/100495 — systems biology — Posted on 2017-01-15

491 Spatially periodic activation patterns of retrosplenial cortex encode route sub-spaces and distance travelled

Alexander, A. S.; Nitz, D. A.

10.1101/100537 — neuroscience — Posted on 2017-01-15

492 A Change-point Analysis Method for Single-trial Study of Simultaneous EEG-fMRI of Auditory/Visual Oddball Task

Dizaji, A. S.; Soltanian-Zadeh, H.

10.1101/100487 — neuroscience — Posted on 2017-01-15

493 Characterizing regulatory sequence features that discriminate between overlapping annotation labels

Kakumanu, A.; Velasco, S.; Mazzoni, E. O.; Mahony, S.

10.1101/100511 — bioinformatics — Posted on 2017-01-15

494 Use of phenylacetonitrile plus acetic acid to monitor Pandemis pyrusana (Lepidoptera: Tortricidae) in apple

Knight, A.; Basoalto, E.; Judd, G.; Hilton, R.; Suckling, M.; El-Sayed, A.

10.1101/092452 — ecology — Posted on 2017-01-15

495 A global perspective of codon usage

Khomtchouk, B.; Wahlestedt, C.; Nonner, W.

10.1101/076679 — genetics — Posted on 2017-01-14

496 A regression framework for the proportion of true null hypotheses

Boca, S. M.; Leek, J. T.

10.1101/035675 — bioinformatics — Posted on 2017-01-14

497 DeepAD: Alzheimer’s Disease Classification via Deep Convolutional Neural Networks using MRI and fMRI

Sarraf, S.; DeSouza, D. D.; Anderson, J.; Tofighi, G.; for the Alzheimer's Disease Neuroimaging Initiativ,

10.1101/070441 — bioinformatics — Posted on 2017-01-14

498 An index of the quality of evidence in meta-analysis of randomized controlled trials

Brewer, D. D.

10.1101/100081 — scientific communication and education — Posted on 2017-01-13

499 Estrogen and Soy Isoflavonoids Decrease Sensitivity of Medulloblastoma and Central Nervous System Primitive Neuroectodermal Tumor Cells to Chemotherapeutic Cytotoxicity

Belcher, S. M.; Burton, C. C.; Cookman, C. J.; Kirby, M.; Miranda, G. L. L.; Saeed, F.; Wray, K. E.

10.1101/100107 — pharmacology and toxicology — Posted on 2017-01-13

500 Wide-ranging and unexpected consequences of altered Pol II catalytic activity in vivo

Malik, I.; Qiu, C.; Snavely, T.; Kaplan, C. D.

10.1101/072785 — molecular biology — Posted on 2017-01-13

501 Specific T cell factors exist

Hoffmann, G. W.; Gorczynski, R.

10.1101/100024 — immunology — Posted on 2017-01-13

502 It’s okay to be green: Draft genome of the North American Bullfrog (Rana [Lithobates] catesbeiana)

Hammond, S. A.; Warren, R. L.; Vandervalk, B. P.; Kucuk, E.; Khan, H.; Gibb, E. A.; Pandoh, P.; Kirk, H.; Zhao, Y.; Jones, M.; Mungall, A. J.; Coope, R.; Pleasance, S.; Moore, R. A.; Holt, R. A.; Round, J. M.; Ohora, S.; Veldhoen, N.; Helbing, C. C.; Birol, I.

10.1101/100149 — genomics — Posted on 2017-01-13

503 Leveraging biological insight and environmental variation to improve phenotypic prediction: Integrating crop growth models (CGM) with whole genome prediction (WGP)

Messina, C. D.; Technow, F.; Tang, T.; Totir, R. L.; Gho, C.; Cooper, M.

10.1101/100057 — genetics — Posted on 2017-01-13

504 Pollutants and insecticides drive local adaptation in African malaria mosquitoes

Kamdem, C.; Fouet, C.; Gamez, S.; White, B. J.

10.1101/067660 — evolutionary biology — Posted on 2017-01-13

505 FEMALE CHEMICAL WARFARE DRIVES FITNESS EFFECTS OF GROUP SEX RATIO

Khan, I.; Prakash, A.; Issar, S.; Umarani, M.; Sasidharan, R.; N M, J.; Lama, P.; Venkatesan, R.; Agashe, D.

10.1101/100354 — evolutionary biology — Posted on 2017-01-13

506 Mechanical interactions in bacterial colonies and the surfing probability of beneficial mutations

Farrell, F. F.; Gralka, M.; Hallatschek, O.; Waclaw, B.

10.1101/100099 — evolutionary biology — Posted on 2017-01-13

507 Interactions between ecological, evolutionary, and environmental processes unveil complex dynamics of island biodiversity

Sarmento Cabral, J.; Wiegand, K.; Kreft, H.

10.1101/099978 — ecology — Posted on 2017-01-13

508 Adjudicating between face-coding models with individual-face fMRI responses

Carlin, J. D.; Kriegeskorte, N.

10.1101/029603 — neuroscience — Posted on 2017-01-13

509 Non-annual seasonality of influenza-like illness in a tropical urban setting

Lam, H. M.; Wesolowski, A.; Hung, N. T.; Nguyen, T. D.; Nhat, N. T. D.; Todd, S.; Vinh, D. N.; Vy, N. H. T.; Thao, T. T. N.; Thanh, N. T. L.; Tin, P. T.; Minh, N. N. Q.; Bryant, J. E.; Buckee, C. O.; Ngoc, T. V.; Chau, N. V. V.; Thwaites, G. E.; Farrar, J.; Tam, D. T. H.; Vinh, H.; Boni, M. F.

10.1101/100222 — epidemiology — Posted on 2017-01-13

510 Computations underlying peoples risk-preferences in social interactions

Pulcu, E.; Haruno, M.

10.1101/100313 — neuroscience — Posted on 2017-01-13

511 An Improved Crystal Violet Assay for Biofilm Quantification in 96-Well Microtitre Plate

Shukla, S. K.; Rao, T. S.

10.1101/100214 — microbiology — Posted on 2017-01-13

512 A high-density linkage map reveals sexually-dimorphic recombination landscapes in red deer (Cervus elaphus)

Johnston, S. E.; Huisman, J.; Ellis, P. A.; Pemberton, J. M.

10.1101/100131 — genomics — Posted on 2017-01-13

513 Repression of YdaS Toxin is Mediated by Transcriptional Repressor RacR in the cryptic rac prophage of Escherichia coli K12

Krishnamurthi, R.; Ghosh, S.; Khedkar, S.; Seshasayee, A. S. N.

10.1101/100248 — genetics — Posted on 2017-01-13

514 Estimating genetic kin relationships in prehistoric populations

Monroy Kuhn, J. M.; Jakobsson, M.; Gunther, T.

10.1101/100297 — genetics — Posted on 2017-01-13

515 The expected neutral frequency spectrum of linked sites

Ferretti, L.; Klassmann, A.; Raineri, E.; Wiehe, T.; Ramos-Onsins, S. E.; Achaz, G.

10.1101/100123 — genetics — Posted on 2017-01-13

516 Effects of time and isolation on plant diversity: testing island biogeography theory with an eco-evolutionary model

Sarmento Cabral, J.; Whittaker, R. J.; Wiegand, K.; Kreft, H.

10.1101/100289 — ecology — Posted on 2017-01-13

517 Activation of NF-κB by a novel, CDK4-regulated, nucleolar stress response pathway

Chen, J.; Lobb, I.; Morin, P.; Novo, S.; Simpson, J.; Kennerknecht, K.; Oakley, F.; Stark, L.

10.1101/100255 — cell biology — Posted on 2017-01-13

518 A Network Integration Approach for Drug-Target Interaction Prediction and Computational Drug Repositioning from Heterogeneous Information

Luo, Y.; Zhao, X.; Zhou, J.; Yang, J.; Zhang, Y.; Kuang, W.; Peng, J.; Chen, L.; Zeng, J.

10.1101/100305 — bioinformatics — Posted on 2017-01-13

519 Histone 4 acetylation regulates behavioral individuality in zebrafish

Roman, A. C.; Vicente-Page, J.; Perez-Escudero, A.; Carvajal-Gonzalez, J. M.; Fernandez-Salguero, P. M.; de Polavieja, G. G.

10.1101/100230 — animal behavior and cognition — Posted on 2017-01-13

520 Large-scale rewiring in a yeast hybrid

Herbst, R.; Bar-Zvi, D.; Reikhav, S.; Soifer, I.; Breker, M.; Jona, G.; Shimoni, E.; Schuldiner, M.; Levy, A.; Barkai, N.

10.1101/100263 — systems biology — Posted on 2017-01-13

521 Ventral tegmental area neurons use an ensemble code for representing information about ongoing actions

Wood, J.; Simon, N. W.; Koerner, S.; Kass, R. E.; Moghaddam, B.

10.1101/084970 — neuroscience — Posted on 2017-01-13

522 The impact of visual gaze direction on auditory object tracking

Pomper, U.; Chait, M.

10.1101/100065 — neuroscience — Posted on 2017-01-13

523 phylo-node: A Molecular Phylogenetic Toolkit using Node.js

O'Halloran, D. M.

10.1101/075101 — bioinformatics — Posted on 2017-01-13

524 Molecular pathway underlying bouton stabilization by Semaphorin4D during inhibitory synapse formation

Frias, C. P.; Bresser, T.; Scheefhals, L.; van Bergen en Henegouwen, P. M. P.; Hoogenraad, C. C.; Wierenga, C. J.

10.1101/100271 — neuroscience — Posted on 2017-01-13

525 Relating dynamic brain states to dynamic machine states: human and machine solutions to the speech recognition problem

Wingfield, C.; Su, L.; Liu, X.; Zhang, C.; Woodland, P.; Thwaites, A.; Fonteneau, E.; Marslen-Wilson, W. D.

10.1101/074799 — neuroscience — Posted on 2017-01-13

526 Categorizing Ideas about Systematics: Alternative Trees of Trees, and Related Representations

Podani, J.; Morrison, D. A.

10.1101/079483 — evolutionary biology — Posted on 2017-01-13

527 Determinants and patterns of the endangered brown bear Ursus arctos habitat use in the French Pyrenees revealed by occupancy modeling

Piedallu, B.; Quenette, P.-Y.; Bombillon, N.; Gastineau, A.; Miquel, C.; Gimenez, O.

10.1101/075895 — ecology — Posted on 2017-01-13

528 Bayesian inference of agent-based models: a tool for studying kidney branching morphogenesis

Lambert, B.; MacLean, A. L.; Fletcher, A. G.; Coombes, A. N.; Little, M. H.; Byrne, H. M.

10.1101/096032 — developmental biology — Posted on 2017-01-13

529 A Critical Review on the Use of Support Valuesin Tree Viewers and Bioinformatics Toolkits

Czech, L.; Huerta-Cepas, J.; Stamatakis, A.

10.1101/035360 — evolutionary biology — Posted on 2017-01-13

530 Chemotactic synthetic vesicles: design and applications in blood brain barrier crossing

Joseph, A.; Contini, C.; Cecchin, D.; Nyberg, S.; Ruiz-Perez, L.; Gaitzsch, J.; Fullstone, G.; Tian, X.; Azizi, J.; Preston, J.; Volpe, G.; Battaglia, G.

10.1101/061325 — bioengineering — Posted on 2017-01-13

531 Limits of noise for autoregulated gene expression

Czuppon, P.; Pfaffelhuber, P.

10.1101/100115 — systems biology — Posted on 2017-01-12

532 Distributed Biotin-Streptavidin Transcription Roadblocks for Mapping Cotranscriptional RNA Folding

Strobel, E. J.; Watters, K. E.; Lucks, J.

10.1101/100073 — molecular biology — Posted on 2017-01-12

533 Deterministic influences exceed dispersal effects on hydrologically-connected microbiomes

Graham, E. B.; Crump, A. R.; Resch, C. T.; Fansler, S.; Arntzen, E.; Kennedy, D. W.; Fredrickson, J. K.; Stegen, J. C.

10.1101/088518 — ecology — Posted on 2017-01-12

534 Investigations of human myosin VI targeting using optogenetically-controlled cargo loading

French, A. R.; Sosnick, T. R.; Rock, R. S.

10.1101/068965 — biophysics — Posted on 2017-01-12

535 Dynamic Maternal Gradients Control Timing and Shift-Rates for Gap Gene Expression

Verd, B.; Crombach, A.; Jaeger, J.

10.1101/068064 — systems biology — Posted on 2017-01-12

536 Decomposing the site frequency spectrum: the impact of tree topology on neutrality tests

Ferretti, L.; Ledda, A.; Achaz, G.; Wiehe, T.; Ramos-Onsins, S. E.

10.1101/042044 — genetics — Posted on 2017-01-12

537 A damped oscillator imposes temporal order on posterior gap gene expression in Drosophila

Verd, B.; Clark, E.; Wotton, K. R.; Janssens, H.; Jimenez-Guri, E.; Crombach, A.; Jaeger, J.

10.1101/068072 — developmental biology — Posted on 2017-01-12

538 Capturing in vivo RNA transcriptional dynamics from the malaria parasite P. falciparum

Painter, H. J.; Carrasquilla, M.; Llinas, M.

10.1101/099549 — microbiology — Posted on 2017-01-12

539 10 Simple Rules for Sharing Human Genomic Data

Corpas, M.; Whicher, C.; Kovalevskaya, N. V.; Byers, T.; McMurray, A. A.; Nielsen, F. G.; Khodiyar, V. K.

10.1101/094110 — genomics — Posted on 2017-01-12

540 Toddlers later diagnosed with autism exhibit multiple structural abnormalities in temporal corpus callosum fibers

Fingher, N.; Dinstein, I.; Ben- Shachar, M.; Haar, S.; Dale, A.; Eyler, L.; Pierce, K.; Courchesne, E.

10.1101/099937 — neuroscience — Posted on 2017-01-12

541 Polycomb-Mediated Chromatin Loops Revealed by a Sub-Kilobase Resolution Chromatin Interaction Map

Eagen, K. P.; Lieberman Aiden, E.; Kornberg, R. D.

10.1101/099804 — molecular biology — Posted on 2017-01-12

542 Variation in the microbiome of the urogenital tract of koalas (Phascolarctos cinereus) with and without "wet bottom"

Legione, A. R.; Amery-Gale, J.; Lynch, M.; Haynes, L.; Gilkerson, J.; Devlin, J.; Sansom, F.

10.1101/099945 — microbiology — Posted on 2017-01-12

543 Bayesian inference of agent-based models: a tool for studying kidney branching morphogenesis

Lambert, B.; MacLean, A. L.; Fletcher, A. G.; Coombes, A. N.; Little, M. H.; Byrne, H. M.

10.1101/096032 — developmental biology — Posted on 2017-01-12

544 CRISPR-RT: A web service for designing CRISPR-C2c2 crRNA with improved target specificity

Zhu, H.; Richmond, E.; Liang, C.

10.1101/099895 — bioinformatics — Posted on 2017-01-12

545 riboviz: analysis and visualization of ribosome profiling datasets

Carja, O.; Xing, T.; Plotkin, J. B.; Shah, P.

10.1101/100032 — bioinformatics — Posted on 2017-01-12

546 Deciphering the dynamical origin of mixed population during neural stem cell developmental lineage commitment

SENGUPTA, D.; Kar, S.

10.1101/099903 — systems biology — Posted on 2017-01-12

547 QuPath: Open source software for digital pathology image analysis

Bankhead, P.; Loughrey, M. B.; Fernandez, J. A.; Dombrowski, Y.; McArt, D. G.; Dunne, P. D.; McQuaid, S.; Gray, R. T.; Murray, L. J.; Coleman, H. G.; James, J. A.; Salto-Tellez, M.; Hamilton, P. W.

10.1101/099796 — pathology — Posted on 2017-01-12

548 Identification of Mechanisms of Functional Signaling Between Human Hippocampus Regions

Sanchez-Romero, R.; Ramsey, J. D.; Liang, J. C.; Glymour, C.

10.1101/099820 — neuroscience — Posted on 2017-01-12

549 Evaluation of Oxford Nanopore MinION Sequencing for 16S rRNA Microbiome Characterization

Ma, X.; Stachler, E.; Bibby, K.

10.1101/099960 — microbiology — Posted on 2017-01-12

550 Genomic rearrangements near genes leading to upregulation across a diverse subset of human cancers

Creighton, C.; Zhang, Y.; Chen, F.

10.1101/099861 — genomics — Posted on 2017-01-12

551 Ancient antagonism between CELF and RBFOX families tunes mRNA splicing outcomes

Gazzara, M. R.; Mallory, M. J.; Roytenberg, R.; Lindberg, J.; Jha, A.; Lynch, K. W.; Barash, Y.

10.1101/099853 — genomics — Posted on 2017-01-12

552 Predicting Transcriptional Regulatory Activities with Deep Convolutional Networks

Paggi, J.; Lamb, A.; Tian, K.; Hsu, I.; Cedoz, P.-L.; Kawthekar, P.

10.1101/099879 — genomics — Posted on 2017-01-12

553 Multidisciplinary field research in Kabwe, Zambia, towards better understanding of lead contamination of the city - A short report from a field survey

Uchida, Y.; Banda, K.; Hamamoto, T.; Yoshii, Y.; Munthali, K.; Mwansa, M.; Mukuka, M.; Mutale, M.; Naruse, N.; Takahashi, Y.

10.1101/096164 — ecology — Posted on 2017-01-12

554 The scaffolding protein Cnk Interacts with Alk to Promote Visceral Founder Cell Specification in Drosophila

Wolfstetter, G.; Pfeifer, K.; vanDijk, J. R.; Hugosson, F.; Lu, X.; Palmer, R. H.

10.1101/099986 — developmental biology — Posted on 2017-01-12

555 DeeperBind: Enhancing Prediction of Sequence Specificities of DNA Binding Proteins

Wang, M. D.; Hassanzadeh, H. R.

10.1101/099754 — bioinformatics — Posted on 2017-01-12

556 Targeting the PD-1/PD-L1 pathway potentiates immunoediting to counterbalance neutral evolution in a mouse model of colorectal cancer

Trajanoski, Z.; Efremova, M.; Klepsch, V.; Charoentong, P.; Finotello, F.; Rieder, D.; Hackl, H.; Hermann-Kleiter, N.; Baier, G.; Krogsdam, A.

10.1101/099747 — genomics — Posted on 2017-01-12

557 Selective constraints on coding sequences of nervous system genes are a major determinant of duplicate gene retention in vertebrates

Roux, J.; Liu, J.; Robinson-Rechavi, M.

10.1101/072959 — evolutionary biology — Posted on 2017-01-12

558 Interactions retain the co-phylogenetic matching that communities lost

Poisot, T.; Stouffer, D.

10.1101/033050 — evolutionary biology — Posted on 2017-01-12

559 Remote effect of Insecticide-treated nets and the personal protection against malaria mosquito bites

Moiroux, N.; Chandre, F.; Hougard, J.-M.; Corbel, V.; Pennetier, C.

10.1101/073718 — epidemiology — Posted on 2017-01-12

560 Gene expression profiling reveals U1 snRNA regulates cancer gene expression

Cheng, Z.; Sun, Y.; Niu, X.; Shang, Y.; Wu, Z.; Shi, J.; Gao, S.; Zhang, T.

10.1101/099929 — cancer biology — Posted on 2017-01-12

561 Temporal super-resolution in single-molecule experiments

Kinz-Thompson, C. D.; Gonzalez, R. L.

10.1101/099648 — biophysics — Posted on 2017-01-12

562 Dissecting limiting factors of the Protein synthesis Using Recombinant Elements (PURE) system

Li, J.; Zhang, C.; Huang, P.; Kuru, E.; Benson, E. T. C. F.; Li, T.; Church, G. M.

10.1101/099838 — bioengineering — Posted on 2017-01-12

563 Caenorhabditis elegans as an emerging model for studying the basic biology of anorectic effects of nicotine

Sobkowiak, R.; Kaczmarek, P.; Kowalski, M.; Kabaciłski, R.; Lesicki, A.

10.1101/099952 — animal behavior and cognition — Posted on 2017-01-12

564 The 2D-structure of the T. brucei pre-edited RPS12 mRNA is not affected by macromolecular crowding

Leeder, W.- M.; Voskuhl, S.; Goringer, H. U.

10.1101/099200 — molecular biology — Posted on 2017-01-12

565 Glucocorticoids change neural decoding in the middle cingulate cortex accompanied by a reduction of subjective fear in patients with spider phobia

Schwab, S.; Federspiel, A.; Morishima, Y.; Nakataki, M.; Strik, W.; Wiest, R.; Heinrichs, M.; de Quervain, D.; Soravia, L. M.

10.1101/099697 — neuroscience — Posted on 2017-01-11

566 Small RNAs reflect grandparental environments in apomictic dandelion

Morgado, L.; Preite, V.; Oplaat, C.; Anava, S.; Ferreira de Carvalho, J.; Rechavi, O.; Johannes, F.; Verhoeven, K.

10.1101/099572 — genetics — Posted on 2017-01-11

567 The leading-edge vortex of swift wings

Viola, I. M.; Muir, R. E.

10.1101/099713 — bioengineering — Posted on 2017-01-11

568 Captive-bred Orangutans voluntarily choose to reward themselves with cabbage containing greater amounts of anthocyanin in a two-alternative decision task.

Mennie, N. R.; Symonds, R.; Mahadzir, M.

10.1101/099432 — animal behavior and cognition — Posted on 2017-01-11

569 Locomotor activity modulates associative learning in mouse cerebellum

Albergaria, C.; Silva, N. T.; Pritchett, D.; Carey, M. R.

10.1101/099721 — neuroscience — Posted on 2017-01-11

570 Surface-driven RNA-refolding by the OB-fold proteins of the Trypanosoma brucei editosome

Voigt, C.; Dobrychłop, M.; Kruse, E.; Czerwoniec, A.; Kasprzak, J. M.; Bytner, P.; Bujnicki, J. M.; Goringer, H. U.

10.1101/099705 — molecular biology — Posted on 2017-01-11

571 The genome-wide transcriptional response to varying RpoS levels in Escherichia coli K-12

Wong, G. T.; Bonocora, R. P.; Schep, A. N.; Beeler, S. M.; Lee Fong, A. J.; Shull, L. M.; Batachari, L. E.; Dillon, M.; Evans, C.; Becker, C. J.; Bush, E. C.; Hardin, J.; Wade, J. T.; Stoebel, D. M.

10.1101/082537 — microbiology — Posted on 2017-01-11

572 Capturing in vivo RNA transcriptional dynamics from the malaria parasite P. falciparum

Painter, H. J.; Carrasquilla, M.; Llinas, M. M.

10.1101/099549 — microbiology — Posted on 2017-01-11

573 Genomic and Environmental Contributions to Chronic Diseases in Urban Populations

Fave, M.-J.; Lamaze, F.; Hodgkinson, A.; Gauvin, H.; Bruat, V.; Grenier, J.-C.; Gbeha, E.; Skead, K.; Smargiassi, A.; Johnson, M.; Idaghdour, Y.; Awadalla, P.

10.1101/099770 — genomics — Posted on 2017-01-11

574 No evidence for the radiation time lag model after whole genome duplications in Teleostei

Laurent, S.; Salamin, N.; Robinson-Rechavi, M.

10.1101/099663 — evolutionary biology — Posted on 2017-01-11

575 Mapping and explaining wolf recolonization in France using dynamic occupancy models and opportunistic data

Louvrier, J.; Duchamp, C.; Marboutin, E.; Cubaynes, S.; Choquet, R.; Miquel, C.; Gimenez, O.

10.1101/099424 — ecology — Posted on 2017-01-11

576 Dynamic patterning by the Drosophila pair-rule network reconciles long-germ and short-germ segmentation

Clark, E.

10.1101/099671 — developmental biology — Posted on 2017-01-11

577 Reversibility of chemotherapy-induced senescence is independent of autophagy and a potential model for tumor dormancy and cancer recurrence.

Saleh, T.; Cudjoe, E. K.; Kyte, S. L.; Henderson, S. C.; Elmore, L. W.; Gewirtz, D.

10.1101/099812 — cancer biology — Posted on 2017-01-11

578 Direct visualization of transcriptional activation by physical enhancer-promoter proximity

Chen, H.; Fujioka, M.; Gregor, T.

10.1101/099523 — biophysics — Posted on 2017-01-11

579 Soft drug-resistant ovarian cancer cells invade via two distinct mechanisms utilizing myosin IIB

Kapoor, A.; Thakur, B.; Monteiro, M.; Das, A.; Desai, S.; Gaikwad, S.; Bukhari, A. B.; Mogha, P.; Majumder, A.; De, A.; Ray, P.; Sen, S.

10.1101/099655 — biophysics — Posted on 2017-01-11

580 Detection and quantification of viral RNA in human tumors using open source pipeline: viGEN

Bhuvaneshwar, K.; Song, L.; Madhavan, S.; Gusev, Y.

10.1101/099788 — bioinformatics — Posted on 2017-01-11

581 An Adaptive Geometric Search Algorithm for Macromolecular Scaffold Selection

Jiang, T.; Renfrew, D.; Drew, K.; Youngs, N.; Butterfoss, G.; Shasha, D.; Bonneau, R.

10.1101/099762 — bioengineering — Posted on 2017-01-11

582 Captive-bred Orangutans voluntarily choose to reward themselves with cabbage containing greater amounts of anthocyanin in a two-alternative decision task.

Mennie, N. R.; Symonds, R.; Mahadzir, M.

10.1101/099432 — animal behavior and cognition — Posted on 2017-01-11

583 Targeting the PD-1/PD-L1 pathway potentiates immunoediting to counterbalance neutral evolution in a mouse model of colorectal cancer

Trajanoski, Z.; Efremova, M.; Klepsch, V.; Charoentong, P.; Finotello, F.; Rieder, D.; Hackl, H.; Hermann-Kleiter, N.; Baier, G.; Krogsdam, A.

10.1101/099747 — genomics — Posted on 2017-01-11

584 Persistence of antibiotic resistance plasmids in bacterial biofilms

Ridenhour, B.; Metzger, G.; France, M.; Gliniewicz, K.; Millstein, J.; Forney, L.; Top, E.

10.1101/098368 — evolutionary biology — Posted on 2017-01-11

585 Biowheel: interactive visualization and exploration of biomedical data

Hu, C.; Bisberg, A. J.; Qutub, A. A.

10.1101/099739 — bioinformatics — Posted on 2017-01-11

586 New genes and functional innovation in mammals

Villanueva-Canas, J. L.; Ruiz-Orera, J.; Agea, M. I.; Gallo, M.; Andreu, D.; Alba, M. M.

10.1101/090860 — evolutionary biology — Posted on 2017-01-11

587 Group size constraints may mask underlying similarities in social structure: a comparison of female elephant societies

Shetty, N.; Keerthipriya, P.; Vidya, T. N. C.

10.1101/099614 — animal behavior and cognition — Posted on 2017-01-11

588 Glutamate release is inhibitory and unnecessary for the long-term potentiation of presynaptic function

Padamsey, Z.; Tong, R.; Emptage, N.

10.1101/099515 — neuroscience — Posted on 2017-01-11

589 Five years investigation of female and male genotypes in Perigord black truffle (Tuber melanosporum Vittad.) revealed contrasted reproduction strategies

De la Varga, H.; Le Tacon, F.; Lagoguet, M.; Todesco, F.; Varga, T.; Miquel, I.; Barry-Etienne, D.; Robin, C.; Halkett, F.; Martin, F.; Murat, C.

10.1101/073650 — microbiology — Posted on 2017-01-11

590 On the (im)possibility to reconstruct plasmids from whole genome short-read sequencing data

Arredondo-Alonso, S.; van Schaik, W.; Willems, R. J.; Schurch, A. C.

10.1101/086744 — microbiology — Posted on 2017-01-11

591 Association between urinary biomarkers of total sugars and sucrose intake and BMI in a cross-sectional study

Campbell, R.; Tasevska, N.; Jackson, K. G.; Sagi-Kiss, V.; di Paolo, N.; Mindell, J. S.; Lister, S. J.; Khaw, K.-T.; Kuhnle, G. G. C.

10.1101/099556 — epidemiology — Posted on 2017-01-11

592 Crawling chytrid fungi implicate actin regulators WASP and SCAR in an ancient mode of cell motility

Fritz-Laylin, L. K.; Lord, S. J.; Mullins, R. D.

10.1101/051821 — cell biology — Posted on 2017-01-11

593 Local Control of Intracellular Microtubule Dynamics by End Binding Protein 1 (EB1) Photo-Dissociation

van Haren, J.; Ettinger, A.; Wang, H.; Hahn, K.; Wittmann, T.

10.1101/099598 — cell biology — Posted on 2017-01-10

594 Structural basis of Mycobacterium tuberculosis transcription and transcription inhibition

Lin, W.; Mandal, S.; Degen, D.; Liu, Y.; Ebright, Y.; Li, S.; Feng, Y.; Zhang, Y.; Mandal, S.; Jiang, Y.; Liu, S.; Gigliotti, M.; Talaue, M.; Connell, N.; Das, K.; Arnold, E.; Ebright, R. H.

10.1101/099606 — molecular biology — Posted on 2017-01-10

595 A combined meta-barcoding and shotgun metagenomic analysis of spontaneous wine fermentation

Sternes, P. R.; Lee, D.; Kutyna, D. R.; Borneman, A. R.

10.1101/098061 — microbiology — Posted on 2017-01-10

596 Polymer dynamics of Alp7A reveals two ‘critical’ concentrations that govern dynamically unstable actin-like proteins

Petek, N. A.; Derman, A. I.; Royal, J. A.; Pogliano, J.; Mullins, D.

10.1101/098954 — biochemistry — Posted on 2017-01-10

597 Glutamate release is inhibitory and unnecessary for the long-term potentiation of presynaptic function

Padamsey, Z.; Tong, R.; Emptage, N.

10.1101/099515 — neuroscience — Posted on 2017-01-10

598 Plants resistance to drought relies on early stomata closure

Martin-StPaul, N.; Delzon, S.; Cochard, H.

10.1101/099531 — plant biology — Posted on 2017-01-10

599 Overlap among spatial memories triggers divergence of hippocampal representations

Chanales, A. J.; Oza, A.; Favila, S. E.; Kuhl, B. A.

10.1101/099226 — neuroscience — Posted on 2017-01-10

600 Evidence for a Large-Scale Brain System Supporting Allostasis and Interoception in Humans

Kleckner, I.; Zhang, J.; Touroutoglou, A.; Chanes, L.; Xia, C.; Simmons, W. K.; Quigley, K.; Dickerson, B.; Barrett, L.

10.1101/098970 — neuroscience — Posted on 2017-01-10

601 A High Quality Assembly of the Nile Tilapia (Oreochromis niloticus) Genome Reveals the Structure of Two Sex Determination Regions

Conte, M. A.; Gammerdinger, W. J.; Bartie, K. L.; Penman, D. J.; Kocher, T. D.

10.1101/099564 — genomics — Posted on 2017-01-10

602 Longitudinal differential abundance analysis of microbial marker-gene surveys using smoothing splines

Paulson, J. N.; Talukder, H.; Corrada Bravo, H.

10.1101/099457 — genomics — Posted on 2017-01-10

603 Taxonomic identification of airborne pollen from complex environmental samples by DNA metabarcoding: a methodological study for optimizing protocols

Leontidou, C.; Vernesi, C.; De Groeve, J.; Cristofolini, F.; Vokou, D.; Cristofori, A.

10.1101/099481 — ecology — Posted on 2017-01-10

604 Deconvoluting multiple infections in Plasmodium falciparum from high throughput sequencing data

Zhu, S. J.; Almagro-Garcia, J.; McVean, G.

10.1101/099499 — bioinformatics — Posted on 2017-01-10

605 MmpL3 is the flippase for mycolic acids in mycobacteria

Xu, Z.; Poce, G.; Chng, S. S.

10.1101/099440 — biochemistry — Posted on 2017-01-10

606 Estimation of time-varying decision thresholds from the choice and reaction times without assumptions on the shape

Kang, Y. H. R.

10.1101/090217 — neuroscience — Posted on 2017-01-10

607 Cell fixation and preservation for droplet-based single-cell transcriptomics

Alles, J.; Praktiknjo, S.; Karaiskos, N.; Grosswendt, S.; Ayoub, S.; Schreyer, L.; Boltengagen, A.; Kocks, C.; Rajewsky, N.

10.1101/099473 — genomics — Posted on 2017-01-10

608 Laminin α1 orchestrates VEGFA functions in the ecosystem of colorectal carcinoma

Mammadova-Bach, E.; Rupp, T.; Spenle, C.; Jivkov, I.; P. Shankaranarayanan, P.; Klein, A.; Pisarsky, L.; Mechine-Neuville, A.; Cremel, G.; Kedinger, M.; De Wever, O.; Ambartsumian, N.; Robine, S.; Pencreach, E.; Guenot, D.; Goetz, J. G.; Simon-Assmann, P.; Orend, G.; Lefebvre, O.

10.1101/099465 — cancer biology — Posted on 2017-01-10

609 Distributed representation of context by intrinsic subnetworks in prefrontal cortex

Waskom, M. L.; Wagner, A. D.

10.1101/074880 — neuroscience — Posted on 2017-01-10

610 A quantitative description of the mouse piriform cortex

Srinivasan, S.; Stevens, C. F.

10.1101/099002 — neuroscience — Posted on 2017-01-10

611 Biofilms Confer Resistance to Simulated Extra-terrestrial Geochemical Extremes

Stevens, A. H.; Childers, D.; Fox-Powell, M.; Cockell, C. S.

10.1101/099374 — microbiology — Posted on 2017-01-10

612 BGDMdocker: an workflow base on Docker for analysis and visualization pan-genome and biosynthetic gene clusters of Bacterial

Cheng, G.; Zhou, Z.; Ma, L.; Zhang, G.; WU, Y.; Chen, C.

10.1101/098392 — bioinformatics — Posted on 2017-01-10

613 HLA class I binding prediction via convolutional neural networks

Vang, Y. S.; Xie, X.

10.1101/099358 — bioinformatics — Posted on 2017-01-10

614 Two sides of the same coin: monetary incentives concurrently improve and bias confidence judgments.

Lebreton, M.; Langdon, S.; Slieker, M. J.; Nooitgedacht, J. S.; Goudriaan, A. E.; Denys, D.; Luigjes, J.; van Holst, R. J.

10.1101/099382 — animal behavior and cognition — Posted on 2017-01-10

615 α7 nicotinic acetylcholine receptor signaling modulates the inflammatory and iron homeostasis in fetal brain microglia

Cortes, M.; Cao, M.; Liu, H. L.; Moore, C. S.; Durosier, L. D.; Burns, P.; Fecteau, G.; Desrochers, A.; Barreiro, L. B.; Antel, J.; Frasch, M. G.

10.1101/097295 — neuroscience — Posted on 2017-01-10

616 Improved Kinect sensor based motion capturing system for gait assessment

Muller, B.; Ilg, W.; Giese, M. A.; Ludolph, N.

10.1101/098863 — neuroscience — Posted on 2017-01-10

617 Stability and function of a putative microtubule organizing center in the human parasite Toxoplasma gondii

Leung, J. M.; He, Y.; Zhang, F.; Hwang, Y.-C.; Nagayasu, E.; Liu, J.; Murray, J.; Hu, K.

10.1101/099267 — cell biology — Posted on 2017-01-09

618 In vitro assembly of the Rous Sarcoma Virus capsid protein into hexamer tubes under physiological conditions.

Jaballah, S. A.; Bailey, G. D.; Desfosses, A.; Hyun, J.; Mitra, A. K.; Kingston, R. L.

10.1101/098400 — biochemistry — Posted on 2017-01-09

619 NAPR: a cloud-based framework for neuroanatomical age prediction

Pardoe, H. R.; Kuzniecky, R.

10.1101/099309 — neuroscience — Posted on 2017-01-09

620 The Modulation of Pain by Circadian and Sleep-Dependent Processes: A Review of the Experimental Evidence

Hagenauer, M. H.; Crodelle, J. A.; Piltz, S. H.; Toporikova, N.; Ferguson, P.; Booth, V.

10.1101/098269 — neuroscience — Posted on 2017-01-09

621 Hybrid incompatibility caused by an epiallele

Blevins, T.; Wang, J.; Pflieger, D.; Pontvianne, F.; Pikaard, C. S.

10.1101/099317 — genetics — Posted on 2017-01-09

622 Comparison of one-stage and two-stage genome-wide association studies

Xue, S.; Ogut, F.; Miller, Z.; Verma, J.; Bradbury, P.; Holland, J.

10.1101/099291 — genetics — Posted on 2017-01-09

623 Targeted capture of complete coding regions across divergent species

Schott, R.; Panesar, B.; Card, D. C.; Preston, M.; Castoe, T. A.; Chang, B. S.

10.1101/099325 — evolutionary biology — Posted on 2017-01-09

624 When a foundation crumbles: forecasting forest community dynamics following the decline of the foundation species Tsuga canadensis

Case, B. S.; Buckley, H. L.; Barker Plotkin, A. A.; Orwig, D. A.; Ellison, A. M.

10.1101/099333 — ecology — Posted on 2017-01-09

625 Familiarity with companions aids recovery from fear inzebrafish

Mathuru, A. S.; Schirmer, A.; Ng, T. P. Y.; Kibat, C.; Cheng, R.-K.; Jesuthasan, S.

10.1101/098509 — animal behavior and cognition — Posted on 2017-01-09

626 Using high-throughput barcode sequencing to efficiently map connectomes

Peikon, I. D.; Kebschull, J. M.; Vagin, V. V.; Ravens, D. I.; Brouzes, E.; Correa, I. R.; Bressan, D.; Zador, A.

10.1101/099093 — neuroscience — Posted on 2017-01-09

627 Fine-scale human population structure in southern Africa reflects ecogeographic boundaries

Uren, C.; Kim, M.; Martin, A. R.; Bobo, D.; Gignoux, C. R.; van Helden, P. D.; Moller, M.; Hoal, E. G.; Henn, B.

10.1101/098095 — genetics — Posted on 2017-01-09

628 Using pseudoalignment and base quality to accurately quantify microbial community composition

Reppell, M.; Novembre, J.

10.1101/097949 — bioinformatics — Posted on 2017-01-09

629 Closed-reference metatranscriptomics enables in planta profiling of putative virulence activities in the grapevine trunk-disease complex

Morales-Cruz, A.; Allenbeck, G.; Figueroa-Balderas, R.; Ashworth, V. E.; Lawrence, D. P.; Travadon, R.; Smith, R. J.; Baumgartner, K.; Rolshausen, P.; Cantu, D.

10.1101/099275 — genomics — Posted on 2017-01-09

630 Parasite escape through trophic specialization in a species flock

Hablutzel, P.; Vanhove, M. P.; Deschepper, P.; Gregoir, A. F.; Roose, A. K.; Volckaert, F. A.; Raeymaekers, J. A.

10.1101/098533 — evolutionary biology — Posted on 2017-01-09

631 JDINAC: joint density-based non-parametric differential interaction network analysis and classification using high-dimensional sparse omics data

Ji, J.; He, D.; Feng, Y.; He, Y.; Xue, F.; Xie, L.

10.1101/099234 — systems biology — Posted on 2017-01-09

632 Visual motion computation in recurrent neural networks

Pachitariu, M.; Sahani, M.

10.1101/099101 — neuroscience — Posted on 2017-01-09

633 Spontaneous Neural Encoding of Social Network Position

Parkinson, C.; Kleinbaum, A. M.; Wheatley, T.

10.1101/098988 — neuroscience — Posted on 2017-01-09

634 Multivariate cross-frequency coupling via generalized eigendecomposition

Cohen, M.

10.1101/099184 — neuroscience — Posted on 2017-01-09

635 The 2D-structure of the T. brucei pre-edited RPS12 mRNA is not affected by macromolecular crowding

Leeder, W.- M.; Voskuhl, S.; Goringer, H. U.

10.1101/099200 — molecular biology — Posted on 2017-01-09

636 Watching the clock for 25 years in FlyClockbase: Variability in circadian clocks of Drosophila melanogaster as uncovered by biological model curation

Scheuer, K. S.; Hanlon, B.; Dresel, J. W.; Nolan, E. D.; Davis, J. C.; Loewe, L.

10.1101/099192 — genetics — Posted on 2017-01-09

637 An epigenetic change in a moth is generated by temperature and transmitted to many subsequent generations mediated by RNA

Pavelka, J.; Polakova, S.; Pavelkova, V.

10.1101/099259 — genetics — Posted on 2017-01-09

638 Mutation spectrum of NOD2 reveals recessive inheritance as a main driver of Early Onset Crohn’s Disease

Horowitz, J.; Warner, N.; Staples, J.; Crowley, E.; Murchie, R.; Van Hout, C.; Klauer King, A.; Fiedler, K.; Reid, J. G.; Overton, J.; Shuldiner, A.; Baras, A.; Griffiths, A.; Dewey, F.; Gottesman, O.; Muise, A.; Gonzaga-Jauregui, C.

10.1101/098574 — genetics — Posted on 2017-01-09

639 Automatic classification of diatoms of Merja fouarate

Chahboune, N.; Mehdi, M.; Douira, A.

10.1101/099135 — bioinformatics — Posted on 2017-01-09

640 Critical Assessment of Metagenome Interpretation - a benchmark of computational metagenomics software

Sczyrba, A.; Hofmann, P.; Belmann, P.; Koslicki, D.; Janssen, S.; Droege, J.; Gregor, I.; Majda, S.; Fiedler, J.; Dahms, E.; Bremges, A.; Fritz, A.; Garrido-Oter, R.; Sparholt Jorgensen, T.; Shapiro, N.; Blood, P. D.; Gurevich, A.; Bai, Y.; Turaev, D.; DeMaere, M. Z.; Chikhi, R.; Nagarajan, N.; Quince, C.; Hestbjerg Hansen, L.; Sorensen, S. J.; Chia, B. K. H.; Denis, B.; Froula, J. L.; Wang, Z.; Egan, R.; Kang, D. D.; Cook, J. J.; Deltel, C.; Beckstette, M.; Lemaitre, C.; Peterlongo, P.; Rizk, G.; Lavenier, D.; Wu, Y.-W.; Singer, S. W.; Jain, C.; Strous, M.; Klingenberg, H.; Meinicke, P.; Bart

10.1101/099127 — bioinformatics — Posted on 2017-01-09

641 Utilization of network graph connectivity to evaluate complications of inpatient medical and surgical populations as a method to prioritize quality improvement efforts

Bear-Pfaffendorf, K.

10.1101/099150 — bioinformatics — Posted on 2017-01-09

642 Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples

Quick, J.; Grubaugh, N. D.; Pullan, S. T.; Claro, I. M.; Smith, A. D.; Gangavarapu, K.; Oliveira, G.; Robles-Sikisaka, R.; Rogers, T. F.; Beutler, N. A.; Burton, D. R.; Lewis-Ximenez, L. L.; Goes de Jesus, J.; Giovanetti, M.; Hill, S.; Black, A.; Bedford, T.; Carroll, M. W.; Nunes, M.; Alcantara, L. C.; Sabino, E. C.; Baylis, S. A.; Faria, N.; Loose, M.; Simpson, J. T.; Pybus, O. G.; Andersen, K. G.; Loman, N. J.

10.1101/098913 — genomics — Posted on 2017-01-09

643 Epidemiological and ecological modelling reveal diversity in microbial population structures from a cross-sectional community swabbing study

Coughtrie, A. L.; Morris, D. E.; Anderson, R.; Begum, N.; Cleary, D. W.; Faust, S. N.; Jefferies, J. M.; Kraaijeveld, A. R.; Moore, M. V.; Mullee, M. A.; Roderick, P. J.; Tuck, A.; Whittaker, R. N.; Yuen, H. M.; Doncaster, C. P.; Clarke, S. C.

10.1101/099069 — microbiology — Posted on 2017-01-09

644 Evaluation of the accuracy of imputed sequence variants and their utility for causal variant detection in cattle

Pausch, H.; MacLeod, I. M.; Fries, R.; Emmerling, R.; Bowman, P. J.; Daetwyler, H. D.; Goddard, M. E.

10.1101/085399 — genomics — Posted on 2017-01-09

645 Biocuration as an undergraduate training experience: Improving the annotation of the insect vector of Citrus greening disease

Saha, S.; Hosmani, P. S.; Villalobos-Ayala, K.; Miller, S.; Shippy, T.; Rosendale, A.; Cordola, C.; Bell, T.; Mann, H.; DeAvila, G.; DeAvila, D.; Moore, Z.; Buller, K.; Ciolkevich, K.; Nandyal, S.; Mahoney, R.; Voorhis, J. V.; Dunlevy, M.; Farrow, D.; Hunter, D.; Morgan, T.; Shore, K.; Guzman, V.; Izsak, A.; Dixon, D. E.; Cano, L.; Cridge, A.; Johnson, S.; Cantarel, B. L.; Richardson, S.; English, A.; Leng, N.; Cao, X.; Jiang, H.; Childers, C.; Chen, M.-J.; Flores, M.; Hunter, W.; Cilia, M.; Mueller, L. A.; Munoz-Torres, M.; Nelson, D.; Poelchau, M. F.; Benoit, J.; Wiersma-Koch, H.; D'elia, T.

10.1101/099168 — genomics — Posted on 2017-01-09

646 Active diffusion and advection in the Drosophila ooplasm result from the interplay of the actin and microtubule cytoskeletons

Drechsler, M.; Giavazzi, F.; Cerbino, R.; Palacios, I. M.

10.1101/098590 — biophysics — Posted on 2017-01-09

647 Snaptron: querying and visualizing splicing across tens of thousands of RNA-seq samples

Wilks, C.; Gaddipati, P.; Nellore, A.; Langmead, B.

10.1101/097881 — bioinformatics — Posted on 2017-01-09

648 AFF-1 fusogen can rejuvenate the regenerative potential of adult dendritic trees via self-fusion

Kravtsov, V.; Oren-Suissa, M.; Podbilewicz, B.

10.1101/062679 — neuroscience — Posted on 2017-01-09

649 A spatially resolved network spike in model neuronal cultures reveals nucleation centers, circular traveling waves and drifting spiral waves

Paraskevov, A.; Zendrikov, D.

10.1101/073981 — neuroscience — Posted on 2017-01-09

650 Sleep regulation of the distribution of cortical firing rates

Levenstein, D.; Watson, B. O.; Rinzel, J.; Buzsaki, G.

10.1101/084731 — neuroscience — Posted on 2017-01-09

651 Targeted degradation of CTCF decouples local insulation of chromosome domains from higher-order genomic compartmentalization

Nora, E. P.; Goloborodko, A.; Valton, A.-L.; Gibcus, J. H.; Uebersohn, A.; Abdennur, N.; Dekker, J.; Mirny, L.; Bruneau, B.

10.1101/095802 — genomics — Posted on 2017-01-09

652 Efficient inference of recent and ancestral recombination within bacterial populations

Mostowy, R.; Croucher, N. J.; Andam, C. P.; Corander, J.; Hanage, W. P.; Marttinen, P.

10.1101/059642 — bioinformatics — Posted on 2017-01-09

653 Saccadic suppression as a perceptual consequence of efficient sensorimotor estimation

Crevecoeur, F.; Kording, K. P.

10.1101/099051 — neuroscience — Posted on 2017-01-08

654 Modulation of global transcriptional regulatorynetworks as a strategy for increasing kanamycinresistance of EF-G mutants

Mogre, A.; Seshasayee, A. S. N.

10.1101/059501 — genomics — Posted on 2017-01-08

655 Whole genome sequencing and assembly of a Caenorhabditis elegans genome with complex genomic rearrangements using the MinION sequencing device

Tyson, J. R.; O'Neil, N. J.; Jain, M.; Olsen, H. E.; Hieter, P.; Snutch, T. P.

10.1101/099143 — genomics — Posted on 2017-01-08

656 Novel insights into karyotype evolution and whole genome duplications in legumes

Wong, M. M. L.; Vaillancourt, R. E.; Freeman, J. S.; Hudson, C. J.; Bakker, F. T.; Cannon, C. H.; Ratnam, W.

10.1101/099044 — evolutionary biology — Posted on 2017-01-08

657 The Drosophila pheromone Z4-11Al is encoded together with habitat olfactory cues and mediates species-specific communication

Lebreton, S.; Borrero-Echeverry, F.; Gonzalez, F.; Solum, M.; Wallin, E.; Hedenstroem, E.; Hansson, B. S.; Gustavsson, A.-L.; Bengtsson, M.; Birgersson, G.; Walker, W. B.; Dweck, H.; Becher, P. G.; Witzgall, P.

10.1101/083071 — animal behavior and cognition — Posted on 2017-01-08

658 Strehler-Mildvan correlation is a degenerate manifold of Gompertz fit

Tarkhov, A. E.; Menshikov, L. I.; Fedichev, P. O.

10.1101/064477 — systems biology — Posted on 2017-01-07

659 Invisible noise obscures visible signal in insect motion detection

Tarawneh, G.; Nityananda, V.; Rosner, R.; Errington, S.; Herbert, W.; Cumming, B. G.; Read, J. C. A.; Serrano-Pedraza, I.

10.1101/098459 — neuroscience — Posted on 2017-01-07

660 Accurate alignment between correlated light, cryo-light, and electron cryo-microscopy data using sample support features

Anderson, K. L.; Page, C.; Swift, M. F.; Hanein, D.; Volkmann, N.

10.1101/099077 — biophysics — Posted on 2017-01-07

661 Self-destructive altruism in a synthetic developmental program enables complex feedstock utilization

Egbert, R.; Brettner, L. M.; Zong, D.; Klavins, E.

10.1101/086900 — synthetic biology — Posted on 2017-01-07

662 fastBMA: Scalable Network Inference and Transitive Reduction

Hung, L.-H.; Shi, K.; Wu, M.; Young, W. C.; Raftery, A.; Yeung, K. Y.

10.1101/099036 — systems biology — Posted on 2017-01-06

663 Time-resolved dual root-microbe transcriptomics reveals early induced Nicotiana benthamiana genes and conserved infection-promoting Phytophthora palmivora effectors

Evangelisti, E.; Gogleva, A.; Hainaux, T.; Doumane, M.; Tulin, F.; Quan, C.; Yunusov, T.; Floch, K.; Schornack, S.

10.1101/098855 — plant biology — Posted on 2017-01-06

664 The Environmental Risks of neonicotinoid pesticides: a review of the evidence post-2013

Wood, T. J.; Goulson, D.

10.1101/098897 — pharmacology and toxicology — Posted on 2017-01-06

665 Chunking as a rational strategy for lossy data compression in visual working memory tasks.

Nassar, M. R.; Helmers, J. C.; Frank, M. J.

10.1101/098939 — neuroscience — Posted on 2017-01-06

666 Integration of visual information in auditory cortex promotes auditory scene analysis through multisensory binding

Atilgan, H.; Town, S.; Wood, K.; Jones, G.; Maddox, R.; Lee, A.; Bizley, J. K.

10.1101/098798 — neuroscience — Posted on 2017-01-06

667 Cyclic-di-GMP is required for corneal infection by Pseudomonas aeruginosa and modulates host immunity

Yam, J. K. H.; Aung, T. T.; Chua, S. L.; Cheng, Y.; Kohli, G. S.; Zhou, J.; Constancias, F.; Liu, Y.; Cai, Z.; Salido, M. M. S.; Drautz-Moses, D. I.; Rice, S. A.; Schuster, S. C.; Wu, B.; Kjelleberg, S.; Tolker-Nielsen, T.; Beuerman, R. W.; Givskov, M.; Yang, L.

10.1101/098749 — microbiology — Posted on 2017-01-06

668 Individual boldness is life stage-dependent and linked to dispersal in a hermaphrodite land snail

Dahirel, M.; Vong, A.; Ansart, A.; Madec, L.

10.1101/098822 — ecology — Posted on 2017-01-06

669 Comparing three types of dietary samples for prey DNA decay in an insect generalist predator

Kamenova, S.; Mayer, R.; Coissac, E.; Plantegenest, M.; Traugott, M.

10.1101/098806 — ecology — Posted on 2017-01-06

670 Structural landscape of base pairs containing post-transcriptional modifications in RNA

S. P., P.; Sharma, P.; Mitra, A.

10.1101/098871 — biophysics — Posted on 2017-01-06

671 Reverse Watson-Crick purine-purine base pairs : the Sharp-turn motif and other structural consequences in functional RNAs

Mittal, A.; Halder, A.; Bhattacharya, S.; Bhattacharyya, D.; Mitra, A.

10.1101/098723 — biophysics — Posted on 2017-01-06

672 Building containerized workflows for RNA-seq data using the BioDepot-workflow-Builder (BwB)

Hung, L.-H.; Meiss, T.; Keswani, J.; Xiong, Y.; Sobie, E.; Yeung, K. Y.

10.1101/099010 — bioinformatics — Posted on 2017-01-06

673 Software solutions for reproducible RNA-seq workflows

Meiss, T.; Hung, L.-H.; Xiong, Y.; Sobie, E.; Yeung, K. Y.

10.1101/099028 — bioinformatics — Posted on 2017-01-06

674 A Complete Logical Approach to Resolve the Evolution and Dynamics of Mitochondrial Genome in Bilaterians

Oxusoff, L.; Prea, P.; Perez, Y.

10.1101/098764 — bioinformatics — Posted on 2017-01-06

675 Evolution of the Mineralocorticoid Receptor: Sequence, Structure and Function

Baker, M. E.; Katsu, Y.

10.1101/098921 — physiology — Posted on 2017-01-06

676 Molecular and functional variation in iPSC-derived sensory neurons

Schwartzentruber, J.; Foskolou, S.; Kilpinen, H.; Rodrigues, J.; Alasoo, K.; Knights, A. J.; Patel, M.; Goncalves, A.; Ferreira, R.; Benn, C. L.; Wilbrey, A.; Bictash, M.; Impey, E.; Cao, L.; Lainez, S.; Loucif, A. J.; Whiting, P. J.; HIPSCI Consortium, ; Gutteridge, A.; Gaffney, D. J.

10.1101/095943 — genomics — Posted on 2017-01-06

677 The early pregnancy human placenta shares hypomethylation patterns characteristic of solid tumors

Nordor, A. V.; Nehar-Belaid, D.; Richon, S.; Klatzmann, D.; Bellet, D.; Dangles-Marie, V.; Fournier, T.; Aryee, M. J.

10.1101/098616 — genomics — Posted on 2017-01-06

678 Dual RNA sequencing (dRNA-Seq) of bacteria and their host cells

Marsh, J. W.; Hayward, R.; Shetty, A.; Mahurkar, A.; Humphrys, M.; Myers, G. S. A.

10.1101/098715 — genomics — Posted on 2017-01-06

679 A Comparison of mRNA Sequencing with Random Primed and 3’-Directed Libraries

Xiong, Y.; Soumillon, M.; Wu, J.; Hansen, J.; Hu, B.; van Hasselt, J. G. C.; Jayaraman, G.; Lim, R.; Bouhaddou, M.; Ornelas, L.; Bochicchio, J.; Lenaeus, L.; Stocksdale, J.; Shim, J.; Gomez, E.; Sareen, D.; Svendsen, C.; Thompson, L. M.; Mahajan, M.; Iyengar, R.; Sobie, E. A.; Azeloglu, E. U.; Birtwistle, M. R.

10.1101/098905 — genomics — Posted on 2017-01-06

680 Mutation spectrum of NOD2 reveals recessive inheritance as a main driver of Early Onset Crohn’s Disease

Horowitz, J.; Warner, N.; Stapes, J.; Crowley, E.; Murchie, R.; Van Hout, C.; Klauer King, A.; Fiedler, K.; Reid, J.; Overton, J.; Shuldiner, A.; Baras, A.; Griffiths, A.; Dewey, F.; Gottesman, O.; Muise, A.; Gonzaga-Jauregui, C.

10.1101/098574 — genetics — Posted on 2017-01-06

681 The demographic and adaptive history of the African green monkey

Pfeifer, S. P.

10.1101/098947 — evolutionary biology — Posted on 2017-01-06

682 Local differentiation in the defensive morphology of an invasive zooplankton species is not genetically based

Fiorino, G. E.; McAdam, A. G.

10.1101/098707 — evolutionary biology — Posted on 2017-01-06

683 Distinguishing Mechanisms Underlying EMT Tristability

Jia, D.; Jolly, M. K.; Tripathi, S. C.; Hollander, P. D.; Huang, B.; Lu, M.; Celiktas, M.; Ramirez-Pena, E.; Ben-Jacob, E.; Onuchic, J. N.; Hanash, S. M.; Mani, S. A.; Levine, H.

10.1101/098962 — cancer biology — Posted on 2017-01-06

684 MinorityReport, software for generalized analysis of causal genetic variants

Horst, J.; Wu, W.; DeRisi, J. L.

10.1101/098731 — bioinformatics — Posted on 2017-01-06

685 Deciphering HLA motifs across HLA peptidomes correctly predicts neo-antigens and identifies allostery in HLA specificity

Bassani-Sternberg, M.; Chong, C.; Guillaume, P.; Solleder, M.; Pak, H.; Gannon, P. O.; Kandalaft, L. E.; Coukos, G.; Gfeller, D.

10.1101/098780 — bioinformatics — Posted on 2017-01-06

686 Pathways analyses of schizophrenia GWAS focusing on known and novel drug targets

Gaspar, H. A.; Breen, G.

10.1101/091264 — genomics — Posted on 2017-01-06

687 Potassium channels contribute to activity-dependent scaling of dendritic inhibition

Chang, J. T.; Higley, M. J.

10.1101/098889 — neuroscience — Posted on 2017-01-06

688 Exposure to Wood Smoke is Associated with Increased Risk of Asthma and Respiratory Symptoms in a Honduran Population

Cho, B. H.; Castellanos, E.; Nguyen, E.; Oh, S.; Thakur, N.; Tarsi, J.; Koch, T.; Flores de Boquin, E.; Valladares, A.; Balmes, J.; Burchard, E.; Castro, M.; Galanter, J.

10.1101/085407 — epidemiology — Posted on 2017-01-06

689 Spacer sequences separating transcription factor binding motifs set enhancer quality and strength

Gueroult-Bellone, M.; Nitta, K. R.; Kari, W.; Jacox, E.; Beule Dauzat, R.; Vincentelli, R.; Diarra, C.; Rothbacher, U.; Dantec, C.; CAMBILLAU, C.; Piette, J.; Lemaire, P.

10.1101/098830 — developmental biology — Posted on 2017-01-06

690 Myosin II activity is not required for Drosophila tracheal branching morphogenesis

Ochoa-Espinosa, A.; Harmansa, S.; Caussinus, E.; Affolter, M.

10.1101/098814 — developmental biology — Posted on 2017-01-06

691 RET Ligands Mediate Endocrine Sensitivity via a Bi-stable Feedback Loop with ERα

Horibata, S.; Rice, E. J.; Zheng, H.; Anguish, L. J.; Mukai, C.; Marks, B. A.; Chu, T.; Coonrod, S.; Danko, C. G.

10.1101/098848 — cancer biology — Posted on 2017-01-06

692 Active diffusion and advection in the Drosophila ooplasm result from the interplay of the actin and microtubule cytoskeletons

Drechsler, M.; Giavzzi, F.; Cerbino, R.; Palacios, I. M.

10.1101/098590 — biophysics — Posted on 2017-01-06

693 Euthecosomata (Mollusca, Gastropoda, Thecosomata). Taxonomic review

RAMPAL, J.

10.1101/098475 — zoology — Posted on 2017-01-06

694 Construction and optimization of a heterologous pathway for protocatechuate catabolism in Escherichia coli enables rapid bioconversion of model lignin monomers

Clarkson, S. M.; Kridelbaugh, D. M.; Elkins, J. G.; Guss, A. M.; Michener, J.

10.1101/094805 — synthetic biology — Posted on 2017-01-06

695 EvoKEN: evolutionary knowledge extraction in networks

Linard, B.; Nguyen, N.-h.; Lecompte, O.; Poch, O.; Thompson, J.

10.1101/098285 — evolutionary biology — Posted on 2017-01-06

696 Modeling HIV disease progression and transmission at population-level: The potential impact of modifying disease progression in HIV treatment programs

Ross, J. M.; Ying, R.; Celum, C. L.; Baeten, J. M.; Thomas, K. K.; Murnane, P. M.; van Rooyen, H.; Hughes, J. P.; Barnabas, R. V.

10.1101/097337 — epidemiology — Posted on 2017-01-06

697 Cross-species functional diversity within the PIN auxin efflux protein family

O'Connor, D. L.; Hsia, M. M.; Vogel, J.; Leyser, O.

10.1101/089854 — plant biology — Posted on 2017-01-06

698 Creating a National Vector Surveillance System: Integrated mosquito trap data and digital epidemiology

Rund, S. S. C.; Martinez, M. E.

10.1101/096875 — ecology — Posted on 2017-01-06

699 Retrieving chromatin patterns from deep sequencing data using correlation functions

Molitor, J.; Mallm, J.-P.; Rippe, K.; Erdel, F.

10.1101/054049 — biophysics — Posted on 2017-01-06

700 When invisible noise obscures the signal: the consequences of nonlinearity in motion detection

Tarawneh, G.; Nityananda, V.; Rosner, R.; Errington, S.; Herbert, W.; Cumming, B. G.; Read, J. C. A.; Serrano-Pedraza, I.

10.1101/098459 — neuroscience — Posted on 2017-01-05

701 Epistatic networks jointly influence phenotypes related to metabolic disease and gene expression in Diversity Outbred mice

Tyler, A. L.; Ji, B.; Gatti, D. M.; Munger, S. C.; Churchill, G. A.; Svenson, K. L.; Carter, G. W.

10.1101/098681 — genetics — Posted on 2017-01-05

702 Rps3/uS3 promotes mRNA binding at the 40S ribosome entry channel and stabilizes preinitiation complexes at start codons

Dong, J.; Aitken, C.; Thakur, A.; Shin, B.-S.; Lorsch, J.; Hinnebusch, A. G.

10.1101/098699 — genetics — Posted on 2017-01-05

703 Pharmacogenetic testing through the direct-to-consumer genetic testing company 23andMe

Lu, M.; Lewis, C. M.; Traylor, M.

10.1101/098541 — genetics — Posted on 2017-01-05

704 Selectivity matters: rules of thumb for management of plate-sized, sex-changing fish in the live reef food fish trade

Kindsvater, H.; Reynolds, J.; Sadovy de Mitcheson, Y.; Mangel, M.

10.1101/098624 — ecology — Posted on 2017-01-05

705 Nucleotide-dependent stiffness suggests role of interprotofilament bonds in microtubule assembly

Taute, K. M.; Florin, E.-L.

10.1101/098608 — biophysics — Posted on 2017-01-05

706 Decoding sequence-level information to predict membrane protein expression

Saladi, S. M.; Muller, A.; Javed, N.; Clemons, W. M.

10.1101/098673 — biophysics — Posted on 2017-01-05

707 Egocentric and Allocentric Representations in Auditory Cortex

Town, S. M.; Brimijoin, W. O.; Bizley, J. K.

10.1101/098525 — neuroscience — Posted on 2017-01-05

708 D-Alanine esterification of teichoic acids contributes to Lactobacillus plantarum mediated intestinal peptidase expression and Drosophila growth promotion upon chronic undernutrition

Matos, R. C.; Gervais, H.; Joncour, P.; Schwarzer, M.; Gillet, B.; Martino, M. E.; Courtin, P.; Hughes, S.; Chapot-Chartier, M.-P.; Leulier, F.

10.1101/098434 — microbiology — Posted on 2017-01-05

709 The Effects of Sex and Diet on Physiology and Liver Gene Expression in Diversity Outbred Mice

Gatti, D. M.; Simecek, P.; Somes, L.; Jeffery, C. T.; Vincent, M. J.; Choi, K.; Chen, X.; Churchill, G. A.; Svenson, K. L.

10.1101/098657 — genetics — Posted on 2017-01-05

710 An overexpressed Q allele leads to increased spike density and improved processing quality

Xu, B.-J.; Chen, Q.; Zheng, T.; Jiang, Y.-F.; Qiao, Y.-Y.; Guo, Z.-R.; Cao, Y.-L.; Wang, Y.; Zhang, Y.-Z.; Zong, L.-J.; Zhu, J.; Liu, C.-H.; Jiang, Q.-T.; Lan, X.-J.; Ma, J.; Wang, J.-R.; Zheng, Y.-L.; Wei, Y.-M.; Qi, P.-F.

10.1101/098558 — genetics — Posted on 2017-01-05

711 Allee dynamics: growth, extinction and range expansion

Bose, I.; Pal, M.; Karmakar, C.

10.1101/098418 — evolutionary biology — Posted on 2017-01-05

712 Transcriptome-wide splicing quantification in single cells

Huang, Y.; Sanguinetti, G.

10.1101/098517 — bioinformatics — Posted on 2017-01-05

713 OrthoFiller: utilising data from multiple species to improve the completeness of genome annotations.

Dunne, M. P.; Kelly, S.

10.1101/098566 — bioinformatics — Posted on 2017-01-05

714 Noise suppression in cell-size control

Singh, A.

10.1101/098640 — systems biology — Posted on 2017-01-05

715 Sleep regulation of the distribution of cortical firing rates

Levenstein, D.; Watson, B. O.; Rinzel, J.; Buzsaki, G.

10.1101/084731 — neuroscience — Posted on 2017-01-05

716 Semaphorin-Plexin signaling influences early ventral telencephalic development and thalamocortical axon guidance

Mitsogiannis, M. D.; Little, G. E.; Mitchell, K. J.

10.1101/098236 — neuroscience — Posted on 2017-01-05

717 A Two-Process Model for Circadian and Sleep-dependent Modulation of Pain Sensitivity

Toporikova, N.; Hagenauer, M. H.; Ferguson, P.; Booth, V.

10.1101/098319 — neuroscience — Posted on 2017-01-05

718 Metacognitive impairments extend perceptual decision making weaknesses in compulsivity

Hauser, T. U.; Allen, M.; NSPN Consortium, ; Rees, G.; Dolan, R. J.

10.1101/098277 — neuroscience — Posted on 2017-01-05

719 Evidence for Transcriptome-wide RNA Editing Among Sus scrofa PRE-1 SINE Elements

Funkhouser, S. A.; Steibel, J. P.; Bates, R. O.; Raney, N. E.; Schenk, D.; Ernst, C. W.

10.1101/096321 — genomics — Posted on 2017-01-05

720 Lineage-specific rediploidization is a mechanism to explain time-lags between genome duplication and evolutionary diversification

Robertson, F.; Gundappa, M. K.; Grammes, F.; Hvidsten, T.; Redmond, A.; Lien, S.; Martin, S.; Holland, P.; Sandve, S.; Macqueen, D.

10.1101/098582 — genomics — Posted on 2017-01-05

721 EvoKEN: evolutionary knowledge extraction in networks

Linard, B.; Nguyen, N.-h.; Lecompte, O.; Poch, O.; Thompson, J.

10.1101/098285 — evolutionary biology — Posted on 2017-01-05

722 Measuring physiological responses to stressors using a novel Hmox1 reporter mouse

McMahon, M.; Ding, S.; Acosta-Jimenez, L. P.; Frangova, T. G.; Henderson, C. J.; Wolf, C. R.

10.1101/098467 — physiology — Posted on 2017-01-05

723 Optimal homotopy analysis of a chaotic HIV-1 model incorporating AIDS-related cancer cells

Duarte, J.; Januario, C.; Martins, N.; Ramos, C. C.; Rodrigues, C.; Sardanyes, J.

10.1101/097865 — systems biology — Posted on 2017-01-05

724 The evolution of p53 network behavior

Sivakumar, H.; Hespanha, J. P.; Roh, K.; Proulx, S. R.

10.1101/098376 — systems biology — Posted on 2017-01-05

725 Glimma: interactive graphics for gene expression analysis

Su, S.; Law, C. W.; Ah-Cann, C.; Asselin-Labat, M.-L.; Blewitt, M.; Ritchie, M.

10.1101/096107 — bioinformatics — Posted on 2017-01-05

726 The Impact of Vitamin A and Carotenoids on the Risk of Tuberculosis Progression

Aibana, O.; Franke, M. F.; Huang, C.-C.; Galea, J. T.; Calderon, R.; Zhang, Z.; Becerra, M. C.; Smith, E. R.; Ronnenberg, A. G.; Contreras, C.; Yataco, R.; Lecca, L.; Murray, M. B.

10.1101/095232 — epidemiology — Posted on 2017-01-05

727 Waves of chromatin modifications in mouse dendritic cells in response to LPS stimulation

Vandenbon, A.; Kumagai, Y.; Lin, M.; Suzuki, Y.; Nakai, K.

10.1101/066472 — genomics — Posted on 2017-01-05

728 Mechanism of Nuclear Movements in a Multinucleated Cell

Gibeaux, R.; Politi, A.; Philippsen, P.; Nedelec, F.

10.1101/095695 — cell biology — Posted on 2017-01-05

729 Network cloning using DNA barcodes

Shuvaev, S. A.; Başerdem, B.; Zador, A.; Koulakov, A. A.

10.1101/098343 — neuroscience — Posted on 2017-01-05

730 Integrative pharmacogenomics to infer large-scale drug taxonomy

El-Hachem, N.; Gendoo, D. M. A.; Ghoraie, L. S.; Safikhani, Z.; Smirnov, P.; Chung, C.; Deng, K.; Fang, A.; Birkwood, E.; Ho, C.; Isserlin, R.; Bader, G. D.; Goldenberg, A.; Haibe-Kains, B.

10.1101/046219 — bioinformatics — Posted on 2017-01-05

731 Network cloning using DNA barcodes

Shuvaev, S. A.; Başerdem, B.; Zador, A.; Koulakov, A. A.

10.1101/098343 — neuroscience — Posted on 2017-01-04

732 Frequent recombination of pneumococcal capsule highlights future risks of emergence of novel serotypes.

Mostowy, R.; Croucher, N.; De Maio, N.; Chewapreecha, C.; Salter, S. J.; Turner, P.; Aanensen, D. M.; Bentley, S. D.; Didelot, X.; Fraser, C.

10.1101/098335 — evolutionary biology — Posted on 2017-01-04

733 The relationship between species richness and ecosystem variability is shaped by the mechanism of coexistence

Tredennick, A. T.; Adler, P.; Adler, F.

10.1101/098384 — ecology — Posted on 2017-01-04

734 CircularLogo: A light weighted web application to visualize intra-motif dependencies

Ye, Z.; Ma, T.; Kalmbach, M. T.; Kocher, J.-P. A.; Wang, L.

10.1101/098327 — bioinformatics — Posted on 2017-01-04

735 Tracking Real Time Changes in Working Memory Updating and Gating with Event-Based Eye-Blink Rate

Rac-Lubashevsky, R.; Slagter, H.; Kessler, Y.

10.1101/098103 — neuroscience — Posted on 2017-01-04

736 Adaptive Cortical Parcellations for Source Reconstructed EEG/MEG Connectomes

Farahibozorg, S.-R.; Henson, R. N.; Hauk, O.

10.1101/097774 — neuroscience — Posted on 2017-01-04

737 Encoding variable cortical states with short-term spikepatterns

Telenczuk, B.; Kempter, R.; Curio, G.; Destexhe, A.

10.1101/098210 — neuroscience — Posted on 2017-01-04

738 EEG correlates of working memory performance in females

Pavlov, Y. G.; Kotchoubey, B.

10.1101/098301 — neuroscience — Posted on 2017-01-04

739 Frequent emergence of pathogenic lineages of Klebsiella pneumoniae viamobilisation of yersiniabactin and colibactin

Lam, M. M. C.; Wick, R. R.; Wyres, K. L.; Gorrie, C.; Judd, L. M.; Brisse, S.; Jenney, A.; Holt, K. E.

10.1101/098178 — microbiology — Posted on 2017-01-04

740 Frequency-dependent response of Chromobacterium violaceum to sonic stimulation, and altered gene expression associated with enhanced violacein production at 300 Hz

Joshi, C.; Patel, P.; Singh, A.; Sukhadiya, J.; Shah, V.; Kothari, V.

10.1101/098186 — microbiology — Posted on 2017-01-04

741 Genome-wide mutational diversity in Escherichia coli population evolving in prolonged stationary-phase

Chib, S.; Ali, F.; Seshasayee, A. S. N.

10.1101/098202 — genomics — Posted on 2017-01-04

742 A complex multi-locus, multi-allelic genetic architecture underlying the long-term selection-response in the Virginia body weight line of chickens

Zan, Y.; Sheng, Z.; Ronnegard, L.; Honaker, C. F.; Siegel, P. B.; Carlborg, O.

10.1101/098160 — genetics — Posted on 2017-01-04

743 Patterns of polymorphism at the self-incompatibility locus in 1,083 Arabidopsis thaliana genomes

Tsuchimatsu, T.; Goubet, P.; Gallina, S.; Holl, A.-C.; Fobis-Loisy, I.; Berges, H.; Marande, W.; Prat, E.; Meng, D.; Long, Q.; Platzer, A.; Nordborg, M.; Vekemans, X.; Castric, V.

10.1101/098228 — evolutionary biology — Posted on 2017-01-04

744 Stability and critical transitions in mutualistic ecological systems

Feng, W.; Bailey, R. M.

10.1101/098046 — ecology — Posted on 2017-01-04

745 How does Mg2+ modulate the RNA folding mechanism - a case study of G:C W:W Trans base pair.

Halder, A.; Roy, R.; Bhattacharyya, D.; Mitra, A.

10.1101/098079 — biophysics — Posted on 2017-01-04

746 Age-dependence and aging-dependence: The case of neuronal loss and lifespan in a C. elegans model of Parkinson’s disease

Apfeld, J.; Fontana, W.

10.1101/098038 — developmental biology — Posted on 2017-01-04

747 First record of double-edged sword effect of caterpillar-induced plant volatiles in nature

El-Sayed, A. M.; Suckling, D. M.

10.1101/093963 — ecology — Posted on 2017-01-04

748 Massively parallel clonal analysis using CRISPR/Cas9 induced genetic scars

Junker, J. P.; Spanjaard, B.; Peterson-Maduro, J.; Alemany, A.; Hu, B.; Florescu, M.; van Oudenaarden, A.

10.1101/056499 — systems biology — Posted on 2017-01-04

749 Problems with Estimating Anthesis Phenology Parameters in Zea mays: Consequences for Combining Ecophysiological Models with Genetics

Lamsal, A.; Welch, S.; White, J.; Thorp, K.; Bello, N.

10.1101/087742 — genetics — Posted on 2017-01-04

750 Methicillin-Resistant Staphylococcus aureus and blaCTX-M positive Enterobacteriaceae from retail beef and pork in Singapore

Koh, T. H. H.; Wong, D.; bin Aron, N. K.; Quek, C. L.; Cao, D.; Hsu, L. Y.

10.1101/098111 — microbiology — Posted on 2017-01-04

751 High resolution spatio-temporal assessment of simian/human immunodeficiency virus (SHIV) evolution reveals a highly dynamic process within the host

Feder, A. F.; Kline, C.; Polacino, P.; Cottrell, M.; Kashuba, A. D.; Keele, B. F.; Hu, S.-L.; Petrov, D. A.; Pennings, P.; Ambrose, Z.

10.1101/097980 — evolutionary biology — Posted on 2017-01-04

752 Neuronal gain modulability is determined by dendritic morphology: a computational optogenetic study

Jarvis, S.; Nikolic, K.; Schultz, S.

10.1101/096586 — neuroscience — Posted on 2017-01-04

753 Factors contributing to the accumulation of reproductive isolation: a mixed model approach

Castillo, D. M.

10.1101/072264 — evolutionary biology — Posted on 2017-01-04

754 Seed size and its rate of evolution correlate with species diversification across angiosperms

Igea, J.; Miller, E. F.; Papadopulos, A. S.; Tanentzap, A. J.

10.1101/053116 — evolutionary biology — Posted on 2017-01-04

755 Analysis of phylogenetic relationships and genome size evolution of the Amaranthus genus using GBS indicates the ancestors of an ancient crop

Stetter, M. G.; Schmid, K. J.

10.1101/085472 — evolutionary biology — Posted on 2017-01-04

756 Use of phenylacetonitrile plus acetic acid to monitor Pandemis pyrusana (Lepidoptera: Tortricidae) in apple

El-Sayed, A.; Suckling, D. M.

10.1101/092452 — ecology — Posted on 2017-01-04

757 Efficient repositioning of approved drugs as anti-HIV agents using machine learning based web server Anti-HIV-Predictor

Dai, S.-X.; Chen, H.; Li, W.-X.; Guo, Y.-C.; Liu, J.-Q.; Zheng, J.-J.; Wang, Q.; Li, H.-J.; Chen, B.-W.; Gao, Y.-D.; Li, G.-H.; Zheng, Y.-T.; Huang, J.-F.

10.1101/087445 — bioinformatics — Posted on 2017-01-04

758 Open Hardware: Towards a Fully-Wireless Sub-Cranial Neuro-Implant for Measuring Electrocorticography Signals

Rotermund, D.; Pistor, J.; Hoeffmann, J.; Schellenberg, T.; Boll, D.; Tolstosheeva, E.; Gauck, D.; Stemmann, H.; Peters-Drolshagen, D.; Kreiter, A. K.; Schneider, M.; Paul, S.; Lang, W.; Pawelzik, K. R.

10.1101/036855 — bioengineering — Posted on 2017-01-04

759 Hierarchical tissue organization as a general mechanism to limit the accumulation of somatic mutations

Derenyi, I.; Szollosi, G. J.

10.1101/098129 — cancer biology — Posted on 2017-01-04

760 Bacterial Conversations and Pattern Formation

Majumdar, S.; Roy, S.; Llinas, R.

10.1101/098053 — biophysics — Posted on 2017-01-04

761 Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation

Koren, S.; Walenz, B. P.; Berlin, K.; Miller, J. R.; Bergman, N. H.; Phillippy, A. M.

10.1101/071282 — bioinformatics — Posted on 2017-01-04

762 Multiple zebrafish atoh1 genes specify a diversity of neuronal types in the zebrafish cerebellum

Kidwell, C. U.; Su, C.-Y.; Hibi, M.; Moens, C. B.

10.1101/098012 — developmental biology — Posted on 2017-01-04

763 Tracking the Subtle Mutations Thriving Host Sensing by the Plant Pathogen Streptomyces scabies

Jourdan, S.; Francis, I. M.; Deflandre, B.; Loria, R.; Rigali, S.

10.1101/097998 — microbiology — Posted on 2017-01-03

764 Ultradian Oscillation of Growth Reveals Regulatory Mechanism in the Straightening Movement of Wheat Coleoptile

Bastien, R.; Douady, S.; Moulia, B.

10.1101/093146 — plant biology — Posted on 2017-01-03

765 How context alters value: Price information recruits the brain’s valuation and affective regulation system for shaping experienced taste pleasantness

Schmidt, L.; Skvortsova, V.; Kullen, C.; Weber, B.; Plassmann, H.

10.1101/097915 — neuroscience — Posted on 2017-01-03

766 Lateral geniculate neurons show robust ocular dominance plasticity

Jaepel, J.; Huebener, M.; Bonhoeffer, T.; Rose, T.

10.1101/097923 — neuroscience — Posted on 2017-01-03

767 Parallel streams define the temporal dynamics of speech processing across human auditory cortex

Hamilton, L. S.; Edwards, E.; Chang, E. F.

10.1101/097485 — neuroscience — Posted on 2017-01-03

768 Common object representations for visual production and recognition

Fan, J. E.; Yamins, D. L. K.; Turk-Browne, N. B.

10.1101/097840 — neuroscience — Posted on 2017-01-03

769 The contribution of striatal pseudo-reward prediction errors to value-based decision-making

Mas-Herrero, E.; Sescousse, G.; Cools, R.; Marco-Pallares, J.

10.1101/097873 — neuroscience — Posted on 2017-01-03

770 EXTENDING THE UTILITY OF THE WHO RECOMMENDED ASSAY FOR DIRECT DETECTION OF ENTEROVIRUSES FROM CLINICAL SPECIMEN FOR RESOLVING POLIOVIRUS CO-INFECTION

Faleye, T. O. C.; Adewumi, M. O.; Ozegbe, N. P.; Ogunsakin, O. E.; Ariyo, G.; Adeshina, F. W.; Ogunga, O. S.; Oluwadare, S. D.; Adeniji, J. A.

10.1101/097857 — microbiology — Posted on 2017-01-03

Van Doren, B. M.; Campagna, L.; Helm, B.; Illera, J. C.; Lovette, I. J.; Liedvogel, M.

10.1101/097733 — genomics — Posted on 2017-01-03

772 Validated Bayesian differentiation of causative and passenger mutations

Cross, F. R.; Breker, M.; Lieberman, K. L.

10.1101/097931 — genetics — Posted on 2017-01-03

773 Water availability drives signatures of local adaptation in whitebark pine (Pinus albicaulis Englm.) across fine spatial scales of the Lake Tahoe Basin, USA

Lind, B. M.; Friedline, C. J.; Wegrzyn, J. L.; Maloney, P. E.; Vogler, D. R.; Neale, D. B.; Eckert, A. J.

10.1101/056317 — evolutionary biology — Posted on 2017-01-03

774 Development of 2-phenylethanol plus acetic acid lures to monitor obliquebanded leafroller (Lepidoptera: Tortricidae) under mating disruption

Knight, A.; Judd, G.; Basoalto, E.; El Sayed, A.

10.1101/093955 — ecology — Posted on 2017-01-03

775 Existence and construction of large stable food webs

Haerter, J. O.; Mitarai, N.; Sneppen, K.

10.1101/097907 — ecology — Posted on 2017-01-03

776 CENP-A associated lncRNAs influence chromosome segregation in human cells

Quenet, D.; Sturgill, D.; Olson, M.; Dalal, Y.

10.1101/097956 — cell biology — Posted on 2017-01-03

777 Deficiency of Voltage-gated Proton Channel Hv1 Leads to hypoinsulinaemia, hyperglycemia and glucose intolerance in mice

Wang, X.; Zhao, Q.; Xi, W.; Zhang, S.; Qin, J.; Lv, J.; Che, Y.; Zuo, W.; Li, S. J.

10.1101/097816 — cell biology — Posted on 2017-01-03

778 Masking of a circadian behavior in larval zebrafish involves the thalamo-habenula pathway

Lin, Q.; Jesuthasan, S. J.

10.1101/097790 — neuroscience — Posted on 2017-01-03

779 Individual movement variability magnitudes are predicted by cortical neural variability

Haar, S.; Donchin, O.; Dinstein, I.

10.1101/097824 — neuroscience — Posted on 2017-01-03

780 Switching of metabolic programs in response to light availability is an essential function of the cyanobacterial circadian clock

Puszynska, A. M.; O'Shea, E.

10.1101/090688 — microbiology — Posted on 2017-01-03

781 Karp: Accurate and fast taxonomic classification using pseudoalignment

Reppell, M.; Novembre, J.

10.1101/097949 — bioinformatics — Posted on 2017-01-03

782 Envelope-tACS modulates intelligibility of speech in noise

Wilsch, A.; Neuling, T.; Herrmann, C. S.

10.1101/097576 — neuroscience — Posted on 2017-01-03

783 Red Bull Gives You Incentive Motivation: Understanding Placebo Effects of Energy Drinks on Human Cognitive Performance

Schmidt, L.; Chandon, P.; Pessiglione, M.; Plassmann, H.

10.1101/097717 — neuroscience — Posted on 2017-01-03

784 Your favorite color makes learning more adaptable and precise

Farashahi, S.; Rowe, K.; Aslami, Z.; Lee, D.; Soltani, A.

10.1101/097741 — neuroscience — Posted on 2017-01-03

785 Growth is required for perception of water availability to pattern plant root branches

Robbins, N. E.; Dinneny, J. R.

10.1101/097758 — plant biology — Posted on 2017-01-02

786 Design principles of autocatalytic cycles constrain enzyme kinetics and force low substrate saturation at flux branch points

Barenholz, U.; Davidi, D.; Reznik, E.; Bar-On, Y.; Antonovsky, N.; Noor, E.; Milo, R.

10.1101/074641 — systems biology — Posted on 2017-01-02

787 A new improved and extended version of the multicell bacterial simulator gro

Gutierrez, M. E.; Gregorio-Godoy, P.; Perez del Pulgar, G.; Munoz, L. E.; Saez, S.; Rodriguez-Paton, A.

10.1101/097444 — synthetic biology — Posted on 2017-01-02

788 Complex interactions in legume/cereal intercropping system : role of root exudates in root-to-root communication

Jiao, Y.; Wang, E.; Chen, W.; Smith, D. L.

10.1101/097584 — plant biology — Posted on 2017-01-02

789 Brain connectivity dynamics during social interaction reflect social network structure

Schmaelzle, R.; Brook O'Donnell, M.; Garcia, J. O.; Cascio, C. N. C.; Bayer, J.; Bassett, D.; Vettel, J.; Falk, E. B.

10.1101/096420 — neuroscience — Posted on 2017-01-02

790 Yorkie is required to restrict the injury responses in planarians

Lin, A. Y. T.; Pearson, B. J.

10.1101/092353 — molecular biology — Posted on 2017-01-02

Francis, W. R.; Worheide, G.

10.1101/068627 — genomics — Posted on 2017-01-02

792 An icosahedral virus as a fluorescent calibration standard: methods for counting protein molecules in cells by fluorescence microscopy

Murray, J.

10.1101/088617 — cell biology — Posted on 2017-01-02

793 A meta-analysis of bioinformatics softwarebenchmarks reveals that publication-bias undulyinfluences software accuracy

Gardner, P. P.; Paterson, J. M.; Ashari Ghomi, F.; Umu, S. U. U.; McGimpsey, S.; Pawlik, A.

10.1101/092205 — bioinformatics — Posted on 2017-01-02

794 Paleochronic reversion in Psophocarpus, the decompression function in floral anatomic fields

Benya, E. G. F.

10.1101/070540 — plant biology — Posted on 2017-01-02

795 Evolution of genetic variance during adaptive radiation

Walter, G. M.; Aguirre, D.; Blows, M. W.; Ortiz-Barrientos, D.

10.1101/097642 — evolutionary biology — Posted on 2017-01-02

796 Composite measurements and molecular compressed sensing for highly efficient transcriptomics

Cleary, B.; Cong, L.; Lander, E.; Regev, A.

10.1101/091926 — systems biology — Posted on 2017-01-02

797 Wiring variations that enable and constrain neural computation in a sensory microcircuit

Tobin, W. F.; Wilson, R. I.; Lee, W.-C. A.

10.1101/097659 — neuroscience — Posted on 2017-01-02

798 Beyond modularity: Fine-scale mechanisms and rules for brain network reconfiguration

Khambhati, A. N.; Mattar, M. G.; Bassett, D. S.

10.1101/097691 — neuroscience — Posted on 2017-01-02

799 α7 nicotinic acetylcholine receptor signalling modulates the inflammatory and iron homeostasis in fetal brain microglia

Cortes, M.; Cao, M.; Liu, H. L.; Moore, C. S.; Durosier, L. D.; Burns, P.; Fecteau, G.; Desrochers, A.; Barreiro, L. B.; Antel, J.; Frasch, M. G.

10.1101/097295 — neuroscience — Posted on 2017-01-02

Van Doren, B. M.; Campagna, L.; Helm, B.; Illera, J. C.; Lovette, I. J.; Liedvogel, M.

10.1101/097733 — genomics — Posted on 2017-01-02

801 Chemical composition and the potential for proteomic transformation in cancer, hypoxia, and hyperosmotic stress

Dick, J. M.

10.1101/097667 — cancer biology — Posted on 2017-01-02

802 Monitoring Microtubule Mechanical Vibrations via Optomechanical Coupling

Barzanjeh, S.; Salari, V.; Tuszynski, J. A.; Cifra, M.; Simon, C.

10.1101/097725 — biophysics — Posted on 2017-01-02

803 Tumor cell division rate heterogeneity explains in vitro clonal dominance

Palm, M. M.; Elemans, M.; Beltman, J. B.

10.1101/097683 — bioinformatics — Posted on 2017-01-02

804 Multi-Region Neural Representation: A novel model for decoding visual stimuli in human brains

Yousefnezhad, M.; Zhang, D.

10.1101/097675 — bioinformatics — Posted on 2017-01-02

805 Challenges in identifying and interpreting organizational modules in morphology

Esteve-Altava, B.

10.1101/097261 — zoology — Posted on 2017-01-01

806 Complex interactions in legume/cereal intercropping system : role of root exudates in root-to-root communication

Jiao, Y.; Wang, E.; Chen, W.; Smith, D. L.

10.1101/097584 — plant biology — Posted on 2017-01-01

807 Neural precursors of decisions that matter--an ERP study of deliberate and arbitrary choice

Maoz, U.; Yaffe, G.; Koch, C.; Mudrik, L.

10.1101/097626 — neuroscience — Posted on 2017-01-01

808 Evaluation and rational design of guide RNAs for efficient CRISPR/Cas9-mediated mutagenesis in Ciona

Gandhi, S.; Haeussler, M.; Razy-Krajka, F.; Christiaen, L.; Stolfi, A.

10.1101/041632 — developmental biology — Posted on 2017-01-01

809 LORENZ SYSTEM IN THERMODYNAMICAL MODELLING OF LEUKEMIA MALIGNANCY

Alexeev, I. V.

10.1101/034132 — cancer biology — Posted on 2017-01-01

810 Theoretical principles of multiscale spatiotemporal control of neuronal networks: a complex systems perspective

Dehghani, N.

10.1101/097618 — neuroscience — Posted on 2017-01-01

811 TMEM230 is not a gene for Parkinson disease

Farrer, M. J.; Milnerwood, A. J.; Follett, J.; Guella, I.

10.1101/097030 — genetics — Posted on 2017-01-01

Archive, 2017-01