bioRxiv directory

Chaturvedi, N.; Svarovskaia, E.; Mo, H.; Osinusi, A.; Brainard, D.; Subramanian, M.; McHutchison, J.; Zeuzem, S.; Fellay, J.

10.1101/484071 — genomics — Posted on 2018-11-30

3 Evolution of dispersal can rescue populations from expansion load

Peischl, S.; Gilbert, K. J.

10.1101/483883 — evolutionary biology — Posted on 2018-11-30

4 A Hybrid Model for the Effects of Treatment and Demography on Malaria Superinfection

Henry, J. M.

10.1101/476523 — epidemiology — Posted on 2018-11-30

5 Plasma proteome profiling to detect and avoid sample-related biases in biomarker studies

Geyer, P. E.; Voytik, E.; Treit, P. V.; Doll, S.; Kleinhempel, A.; Niu, L.; Mueller, J. B.; Bader, J.; Teupser, D.; Holdt, L. M.; Mann, M.

10.1101/478305 — epidemiology — Posted on 2018-11-30

6 A cell-of-origin epigenetic tracer reveals clinically distinct subtypes of high grade serous ovarian cancer

Lo Riso, P.; Villa, C. E.; Gasparoni, G.; Luongo, R.; Manfredi, A.; Vingiani, A.; Jungmann, A.; Garbi, A.; Lupia, M.; Laise, P.; Das, V.; Pruneri, G.; Viale, G.; Colombo, N.; Cavallaro, U.; Cacchiarelli, D.; Walter, J.; Testa, G.

10.1101/484063 — cancer biology — Posted on 2018-11-30

7 Frustrated binding of biopolymer crosslinkers

Mulla, Y.; Wierenga, H.; Alkemade, C.; ten Wolde, P. R.; Koenderink, G. H.

10.1101/483669 — biophysics — Posted on 2018-11-30

8 Effects of FLOWERING LOCUS T on FD during the transition to flowering at the shoot apical meristem of Arabidopsis thaliana

Collani, S.; Neumann, M.; Yant, L.; Schmid, M.

10.1101/483925 — plant biology — Posted on 2018-11-30

9 First detection and molecular identification of the zoonotic Anaplasma capra in deer in France

Jouglin, M.; Blanc, B.; de la Cotte, N.; Ortiz, K.; Malandrin, L.

10.1101/482851 — epidemiology — Posted on 2018-11-30

10 Vitamin D status and risk of incident tuberculosis disease: a systematic review and individual participant data meta-analysis

Aibana, O.; Huang, C.-C.; Aboud, S.; Arnedo-Pena, A.; Becerra, M. C.; Bellido-Blasco, J. B.; Bhosale, R.; Calderon, R.; Chiang, S.; Contreras, C.; Fawzi, W. W.; Molly, F. F.; Galea, J. T.; Garcia-Ferrer, D.; Gil-Fortuno, M.; Gomila-Sard, B.; Gupta, A.; Gupte, N.; Hussain, R.; Iborra-Millet, J.; Iqbal, N. T.; Juan-Cerdan, J. V.; Kinikar, A.; Lecca, L.; Mave, V.; Meseguer-Ferrer, N.; Montepiedra, G.; Mugusi, F. M.; Owolabi, O. A.; Parsonnet, J.; Roach-Poblete, F.; Romeu-Garcia, M. A.; Spector, S. A.; Sudfeld, C. R.; Tenforde, M. W.; Togun, T. O.; Yataco, R.; Zhang, Z.; Murray, M. B.

10.1101/481739 — epidemiology — Posted on 2018-11-30

11 Linked-read sequencing of gametes allows efficient genome-wide analysis of meiotic recombination

Sun, H.; Rowan, B. A.; Flood, P. J.; Brandt, R.; Fuss, J.; Hancock, A. M.; Michelmore, R. W.; Huettel, B.; Schneeberger, K.

10.1101/484022 — bioinformatics — Posted on 2018-11-30

12 Approximating instantaneous vaccine efficacy from cumulative vaccine efficacy

van Zandvoort, K.; Clark, A.; Jit, M.; Flasche, S.

10.1101/481804 — epidemiology — Posted on 2018-11-30

13 Sparking \"The BBC Four Pandemic\": Leveraging citizen science and mobile phones to model the spread of disease

Kissler, S. M.; Klepac, P.; Tang, M.; Conlan, A. J.; Gog, J. R.

10.1101/479154 — epidemiology — Posted on 2018-11-30

14 Isoniazid preventive therapy protects against tuberculosis among household contacts of isoniazid-resistant patients.

Huang, C.-C.; Becerra, M. C.; Calderon, R.; Contreras, C.; Galea, J.; Grandjean, L.; Lecca, L.; Yataco, R.; Zhang, Z.; Murray, M.

10.1101/479865 — epidemiology — Posted on 2018-11-30

15 Hierarchical stem cell topography splits growth and homeostatic functions in the fish gill

Centanin, L.; Stolper, J.; Ambrosio, E. M.; Danciu, D.-P.; Elliott, D.; Naruse, K.; Marciniak-Czochra, A.

10.1101/484139 — developmental biology — Posted on 2018-11-30

16 MLL-AF9 Initiates Transformation From Fast-Proliferating Myeloid Progenitors

Chen, X.; Hartman, A.; Hu, X.; Eastman, A. E.; Wang, X.; Zhong, M.; Guo, S.

10.1101/484220 — cancer biology — Posted on 2018-11-30

17 Nanoparticle-based local translation reveals mRNA as translation-coupled scaffold with anchoring function

Kashida, S.; Wang, D. O.; Saito, H.; Gueroui, Z.

10.1101/483727 — molecular biology — Posted on 2018-11-30

18 Evolution of Nodal and Nodal-related genes and the putative composition of the heterodimer that triggers the Nodal pathway in vertebrates

Opazo, J. C.; Kuraku, S.; Zavala, K.; Toloza-Villalobos, J.; Hoffmann, F. G.

10.1101/483974 — evolutionary biology — Posted on 2018-11-30

19 Modelling cost-effectiveness of tenofovir for prevention of mother to child transmission of hepatitis B virus infection in South Africa

Mokaya, J.; Burn, E.; Tamandjou, C. R.; Goedhals, D.; Barnes, E.; Andersson, M.; Pinedo-Villanueva, R.; Matthews, P. C.

10.1101/483966 — epidemiology — Posted on 2018-11-30

20 Effectiveness of live attenuated monovalent human rotavirus vaccination in rural Ecuador, 2008-2013

Kraay, A. N. M.; Ionides, E. L.; Lee, G. O.; Cevallos Trujillo, W. F.; Eisenberg, J. N. S.

10.1101/482893 — epidemiology — Posted on 2018-11-30

21 Determinants of high residual post-PCV13 pneumococcal vaccine type carriage in Blantyre, Malawi: a modelling study.

Lourenco, J.; Obolski, U.; Swarthout, T. D.; Gori, A.; Bar-Zeev, N.; Everett, D.; Kamng'ona, A. W.; Mwalukomo, T. S.; Mataya, A. A.; Mwansambo, C.; Banda, M.; Gupta, S.; French, N.; Heyderman, R. S.

10.1101/477695 — epidemiology — Posted on 2018-11-30

22 Interplay between somatic and dendritic inhibition promotes the emergence and stabilization of place fields

Pedrosa, V.; Clopath, C.

10.1101/483875 — neuroscience — Posted on 2018-11-30

23 Expanded genomic analyses for male voice-breaking highlights a shared phenotypic and genetic basis between puberty timing and hair colour

Hollis, B.; Day, F. R.; Busch, A. S.; Thompsen, D. J.; Soares, A. L. G.; Timmers, P. R.; Kwong, A.; Easton, D. F.; Joshi, P. K.; Timpson, N. J.; The PRACTICAL Consortium, ; 23andMe Research Team, ; Ong, K. K.; Perry, J. R.

10.1101/483933 — genomics — Posted on 2018-11-30

24 Outpatient antibiotic prescribing and demographic factors associated with state-level septicemia mortality rates in US adults

Goldstein, E.; Lipsitch, M.

10.1101/480137 — epidemiology — Posted on 2018-11-30

25 Physical activity in adolescence: cross-national comparisons of levels, distributions and disparities across 52 countries

Bann, D.; Scholes, S.; Fluharty, M.; Shure, N.

10.1101/483552 — epidemiology — Posted on 2018-11-30

26 NucMerge: Genome assembly quality improvement assisted by alternative assemblies and paired-end Illumina reads

Khelik, K.; Nederbragt, A. J.; Sandve, G. K.; Rognes, T.

10.1101/483701 — bioinformatics — Posted on 2018-11-30

27 A structure-based model for the electrostatic interaction of the N-terminus of protein tau with the fibril core of Alzheimer’s Disease filaments

Boyer, D.; Eisenberg, D.

10.1101/484279 — biochemistry — Posted on 2018-11-30

28 QTG-Finder: a machine-learning algorithm to prioritize causal genes of quantitative trait loci in Arabidopsis and rice

Lin, F.; Fan, J.; Rhee, S. Y.

10.1101/484204 — systems biology — Posted on 2018-11-30

29 The value structure of metabolic states

Liebermeister, W.

10.1101/483891 — systems biology — Posted on 2018-11-30

30 Genomic changes underlying host specialization in the bee gut symbiont Lactobacillus Firm5

Ellegaard, K. M.; Brochet, S.; Bonilla-Rosso, G.; Emery, O.; Glover, N.; Hadadi, N.; Jaron, K. S.; van der Meer, J. R.; Robinson-Rechavi, M.; Sentchilo, V.; Tagini, F.; SAGE class 2016-17, ; Engel, P.

10.1101/483685 — microbiology — Posted on 2018-11-30

31 Nanopore direct RNA sequencing reveals modification in full-length coronavirus genomes

Viehweger, A.; Krautwurst, S.; Lamkiewicz, K.; Madhugiri, R.; Ziebuhr, J.; Hölzer, M.; Marz, M.

10.1101/483693 — genomics — Posted on 2018-11-30

32 CDK12 loss in cancer cells affects DNA damage response genes through premature cleavage and polyadenylation

Krajewska, M.; Dries, R.; Grassetti, A. V.; Dust, S.; Gao, Y.; Huang, H.; Sharma, B.; Day, D. S.; Kwiatkowski, N.; Pomaville, M.; Dodd, O.; Chipumuro, E.; Zhang, T.; Greenleaf, A. L.; Yuan, G.-C.; Gray, N. S.; Young, R. A.; Geyer, M.; Gerber, S. A.; George, R. E.

10.1101/483958 — cancer biology — Posted on 2018-11-30

33 How to improve foraging efficiency for restocking measures of juvenile Baltic sturgeon (Acipenser oxyrinchus)

Camara-Ruiz, M.; Espirito Santo, C.; Gessner, J.; Wuertz, S.

10.1101/483651 — animal behavior and cognition — Posted on 2018-11-30

34 Optimal metabolic states in cells

Liebermeister, W.

10.1101/483867 — systems biology — Posted on 2018-11-30

35 Subtilase-mediated activation of CLEL peptides involves several processing events in consecutive compartments of the secretory pathway

Stührwohldt, N.; Scholl, S.; Lang, L.; Katzenberger, J.; Schumacher, K.; Schaller, A.

10.1101/483644 — plant biology — Posted on 2018-11-30

36 A critical role for human ventromedial frontal lobe in value comparison based on multi-attribute configuration

Pelletier, G.; Fellows, L. K.

10.1101/483719 — neuroscience — Posted on 2018-11-30

37 A novel photoactivatable tool for intermediate filament disruption indicates a role for keratin filaments in early embryogenesis

Sanghvi-Shah, R.; Paranjpe, S.; Baek, J.; Dobrowolski, R.; Weber, G.

10.1101/484246 — cell biology — Posted on 2018-11-30

38 Resolving Cytosolic Diffusive States in Bacteria by Single-Molecule Tracking

Rocha, J. M.; Corbitt, J.; Yan, T.; Richardson, C.; Gahlmann, A.

10.1101/483321 — biophysics — Posted on 2018-11-30

39 Elaborate pupils in skates may help camouflage the eye

Youn, S.; Okinaka, C.; Mathger, L.

10.1101/483172 — animal behavior and cognition — Posted on 2018-11-30

40 Liquid biopsy in gastrointestinal stromal tumors -- Simultaneous detection of primary and secondary mutations with an NGS based circulating tumor DNA assay

Somasundaram, N.; Quek, R.; Ho, D.; Harunal Ras, M. F. B.; Lim, R. R. J.; Gan, A.; Tan, W. L.; Chan, J. Y.; Poon, E.; Chua, C. W.; Ong, J.; Chia, C.; Tan, G.; Teo, M.; Goh, W. L.; Lim, W. J.; Hong, J.; Tan, I. B.; Ng, S. B.

10.1101/481622 — molecular biology — Posted on 2018-11-30

41 Novel genes for autism implicate both excitatory and inhibitory cell lineages in risk

Satterstrom, F. K.; Kosmicki, J. A.; Wang, J.; Breen, M.; De Rubeis, S.; An, J.-Y.; Peng, M.; Collins, R. L.; Grove, J.; Klei, L.; Stevens, C.; Reichert, J.; Mulhern, M.; Artomov, M.; Gerges, S.; Sheppard, B.; Xu, X.; Bhaduri, A.; Norman, U.; Brand, H.; Schwartz, G.; Nguyen, R.; Guerrero, E.; Dias, C.; Aleksic, B.; Anney, R. J.; Barbosa, M.; Bishop, S.; Brusco, A.; Bybjerg-Grauholm, J.; Carracedo, A.; Chan, M. C. Y.; Chiocchetti, A.; Chung, B.; Coon, H.; Cuccaro, M.; Curro, A.; Dalla Bernardina, B.; Doan, R.; Domenici, E.; Dong, S.; Fallerini, C.; Fernandez-Prieto, M.; Ferrero, G. B.; Freitag,

10.1101/484113 — genetics — Posted on 2018-11-30

42 Patterns of anisotropic temperature factors in bovine trypsin crystals with and without 0.5 THz irradiation

Ahlberg Gagner, V.; Lundholm, I.; Garcia-Bonete, M.-J.; Rodilla, H.; Friedman, R.; Zhaunerchyk, V.; Bourenkov, G.; Schneider, T.; Stake, J.; Katona, G.

10.1101/475889 — biophysics — Posted on 2018-11-30

43 Science Family skills: An Alexa Assistant Tailored for Laboratory Routine

Lubiana-Alves, T.; Nakaya, H. I.

10.1101/484147 — molecular biology — Posted on 2018-11-30

44 All in thirty milliseconds: EEG evidence of hierarchical and asymmetric phonological encoding of vowels

Manca, A. D.; Di Russo, F.; Sigona, F.; Grimaldi, M.

10.1101/482562 — neuroscience — Posted on 2018-11-30

45 3D Structural Connectivity In Healthy Adults: Detecting Structural Connections And Their Underlying Substrates For Olfactory Saccadic Pathway

Elumalai, G.; Syed, I. S.; Chatterjee, H.; Brown, V.; Sober, L. A.; Ghanta, N. A. S. V.; Chandrasekhar, P.; Venkatesan, A.; Sewram, N.; Muthukumaran, N. R.; Harkrishna, G.; Vamsi, N. M.; Osakwe, N. S.

10.1101/483628 — neuroscience — Posted on 2018-11-30

46 A unified definition of niche and fitness differences

Spaak, J. W.; DeLaender, F.

10.1101/482703 — ecology — Posted on 2018-11-30

47 Genetic Effects of Welding Fumes to the development ofRespiratory System Diseases

Rana, H. K.; Akhtar, M. R.; Islam, M. B.; Lio, P.; Huq, F.; Moni, M. A.

10.1101/480855 — bioinformatics — Posted on 2018-11-30

48 Mining Significant Features of Diabetes Mellitus Applying Decision Trees: A Case Study In Bangladesh

Howladar, K. C.; Satu, M. S.; Barua, A.; Moni, M. A.

10.1101/481994 — bioengineering — Posted on 2018-11-30

49 Genetic, structural, and functional analysis of mutations causing methylmalonyl-CoA epimerase deficiency

Heuberger, K.; Bailey, H. J.; Burda, P.; Chaikuad, A.; Krysztofinska, E.; Suormala, T.; Buerer, C.; Lutz, S.; Fowler, B.; Froese, D. S.; Yue, W. W.; Baumgartner, M. R.

10.1101/484048 — biochemistry — Posted on 2018-11-30

50 The impact of ischemic stroke on connectivity gradients

Bayrak, S.; Khalil, A. A.; Villringer, K.; Fiebach, J. B.; Villringer, A.; Margulies, D. S.; Ovadia-Caro, S.

10.1101/481689 — neuroscience — Posted on 2018-11-30

51 Adaptive Identification of Cortical and Subcortical Imaging Markers of Early Life Stress and Posttraumatic Stress Disorder

Salminen, L. E.; Morey, R. A.; Riedel, B. C.; Jahanshad, N.; Dennis, E. L.; Thompson, P. M.

10.1101/482448 — neuroscience — Posted on 2018-11-30

52 Single cell derived organoids capture the self-renewing subpopulations of metastatic ovarian cancer

Velletri, T.; Villa, C. E.; Lupia, M.; Lo riso, P.; Luongo, R.; Lopez Tobon, A.; De Simone, M.; Bonnal, R. J. P.; Minucci, S.; Piccolo, S.; Colombo, N.; Pagani, M.; Cavallaro, U.; Testa, G.

10.1101/484121 — cancer biology — Posted on 2018-11-30

53 Functional connectivity of the anterior and posterior hippocampus: differential effects of glucose in younger and older adults

Peters, R.; White, D. J.; Cornwell, B. R.; Scholey, A.

10.1101/482455 — neuroscience — Posted on 2018-11-30

54 Development and validation of serological markers for detecting recent exposure to Plasmodium vivax infection

Longley, R. J.; White, M. T.; Takashima, E.; Brewster, J.; Morita, M.; Harbers, M.; Robinson, L. J.; Matsuura, F.; Liu, S.-J.; Li-Wai-Suen, C. S. N.; Tham, W.-H.; Healer, J.; Huon, C.; Chitnis, C. E.; Nguitragool, W.; Monteiro, W. M.; Proietti, C.; Doolan, D. L.; Ding, X. C.; Gonzalez, I. J.; Kazura, J.; Lacerda, M.; Sattabongkot, J.; Tsuboi, T.; Mueller, I.

10.1101/481168 — microbiology — Posted on 2018-11-30

55 Who’s who in the western Hermann’s tortoise conservation: a STR toolkit and reference database for wildlife forensic genetic analyses

Biello, R.; Zampiglia, M.; Corti, C.; Deli, G.; Biaggini, M.; Delaugerre, M.; Di Tizio, L.; Leonetti, F. L.; Olivieri, O.; Pellegrino, F.; Romano, A.; Sperone, E.; Trabalza-Marinucci, M.; Bertorelle, G.; Canestrelli, D.

10.1101/484030 — genetics — Posted on 2018-11-30

56 Soil microbial communities in diverse agroecosystems exposed to glyphosate

Kepler, R.; Epp-Schmidt, D.; Yarwood, S.; Reddy, K. N.; Duke, S. O.; Bradley, C. A.; Williams, M.; Buyer, J.; Cavigelli, M.; Maul, J.

10.1101/484055 — ecology — Posted on 2018-11-30

57 A Network based Approach to Identify the Genetic Influence Caused by Associated Factors and Disorders for the Parkinsons Disease Progression

Sakib, N.; Chowdhury, U. N.; Islam, M. B.; Quinn, J. M. W.; Moni, M. A.

10.1101/482760 — neuroscience — Posted on 2018-11-30

58 Hippocampal-neocortical interactions sharpen over time for predictive actions

Hindy, N. C.; Avery, E. W.; Turk-Browne, N. B.

10.1101/483115 — neuroscience — Posted on 2018-11-30

59 Evaluation of the performance of copy number variant prediction tools for the detection of deletions from whole genome sequencing data

Whitford, W.; Lehnert, K.; Snell, R. G.; Jacobsen, J. C.

10.1101/482554 — genomics — Posted on 2018-11-30

60 Optimised CRISPR-Cas9 mediated single molecule imaging for accurate quantification through endogenous expression.

Khan, A. O.; White, C. W.; Pike, J. A.; Yule, J.; Slater, A.; Hill, S. J.; Poulter, N. S.; Thomas, S. G.; Morgan, N. V.

10.1101/482596 — cell biology — Posted on 2018-11-30

61 Genetic Effects of Welding Fumes on the progression ofNeurodegenerative Diseases

Rana, H. K.; Akhtar, M. R.; Ahmed, M. B.; Lio, P.; Quinn, J.; Huq, F.; Moni, M. A.

10.1101/480806 — bioinformatics — Posted on 2018-11-30

62 Coupling and Decoupling between Brain and Body Oscillations

Rassi, E.; Dorffner, G.; Gruber, W.; Klimesch, W.

10.1101/484097 — animal behavior and cognition — Posted on 2018-11-30

63 Features of criticality are asymmetric in the zebrafish habenula

Suryadi, ; Ramaswamy, M.; Jesuthasan, S. J.; Chew, L. Y.

10.1101/481358 — neuroscience — Posted on 2018-11-30

64 Genetic differences in host infectivity affect disease spread and survival in epidemics

Anacleto, O.; Cabaleiro, S.; Villanueva, B.; Saura, M.; Houston, R.; Woolliams, J. A.; Doeschl-Wilson, A. B.

10.1101/483602 — genetics — Posted on 2018-11-30

65 Uncovering the signaling landscape controlling breast cancer cell migration identifies novel metastasis driver genes

Koedoot, E.; Fokkelman, M.; Rogkoti, V.-M.; Smid, M.; van de Sandt, I.; de Bont, H.; Pont, C.; Klip, J. E.; Timmermans, A. M.; Wiemer, E. A. C.; Stoilov, P.; Foekens, J. A.; Le Devedec, S.; Martens, J. W. M.; van de Water, B.

10.1101/479568 — cancer biology — Posted on 2018-11-30

66 Generating an artificial nest building pufferfish in a cellular automaton through behavior decomposition

Portegys, T. E.

10.1101/478750 — synthetic biology — Posted on 2018-11-30

67 Connecting the legs with a spring improves human running economy

Simpson, C.; Welker, C.; Uhlrich, S.; Sketch, S.; Jackson, R.; Delp, S.; Collins, S.; Sellinger, J.; Hawkes, E.

10.1101/474650 — physiology — Posted on 2018-11-30

68 Excitatory GABAergic signalling is associated with acquired benzodiazepine resistance in status epilepticus

Burman, R. J.; Calin, A.; Codadu, N. K.; Wright, R.; Newey, S. E.; van den Berg, M.; Lee, J. H.; Parish, R. R.; Wilmshurst, J. M.; Akerman, C. J.; Trevelyan, A. J.; Raimondo, J. V.

10.1101/478594 — neuroscience — Posted on 2018-11-30

69 IgG is differentially and selectively transferred across the placenta in HIV-infected women

Martinez, D. R.; Fong, Y.; Li, S. H.; Yang, F.; Jennewein, M.; Weiner, A.; Harrell, E.; Mangold, J.; Goswami, R.; Seage, G.; Alter, G.; Ackerman, M.; Peng, X.; Fouda, G.; Permar, S.

10.1101/479121 — microbiology — Posted on 2018-11-30

70 Risks in signal processing pipelines influencing the estimation of phase dependency for EEG-TMS

Guggenberger, R.; Scherer, M.; Gharabaghi, A.

10.1101/477166 — neuroscience — Posted on 2018-11-30

71 Long-Term Effects of a Novel Continuous Remote Care Intervention Including Nutritional Ketosis for the Management of Type 2 Diabetes: A 2-year Non-randomized Clinical Trial.

Athinarayanan, S. J.; Adams, R. N.; Hallberg, S. J.; McKenzie, A. L.; Bhanpuri, N. H.; Campbell, W. W.; Volek, J. S.; Phinney, S. D.; McCarter, J. P.

10.1101/476275 — clinical trials — Posted on 2018-11-30

72 Towards multi-drug adaptive therapy

West, J.; You, L.; Brown, J.; Newton, P. K.; Anderson, A. R.

10.1101/476507 — cancer biology — Posted on 2018-11-30

73 Does juvenile Baltic sturgeon (Acipenser oxyrinchus) smell the enemy?

Camara-Ruiz, M.; Espirito Santo, C.; Mai, A.; Gessner, J.; Wuertz, S.

10.1101/476952 — animal behavior and cognition — Posted on 2018-11-30

74 A toolbox of IgG subclass-switched recombinant monoclonal antibodies for enhanced multiplex immunolabeling of brain

Andrews, N. P.; Boeckman, J. X.; Manning, C.; Nguyen, J. T.; Bechtold, H.; Dumitras, C.; Gong, B.; Nguyen, K.; van der List, D.; Murray, K. D.; Engebrecht, J.; Trimmer, J.

10.1101/483537 — neuroscience — Posted on 2018-11-30

75 Low oxygen post conditioning improves stroke-induced cognitive impairment

Zhao, Z.; Ong, L. K.; Pietrogrande, G.; Sanchez Bezanilla, S.; Warren, K.; Ilicic, M.; Kluge, M. G.; TeBay, C.; Ottersen, O. P.; Johnson, S. J.; Nilsson, M.; Walker, F. R.

10.1101/483453 — neuroscience — Posted on 2018-11-30

76 Sex differences in gene expression in the human fetal brain

O'Brien, H. E.; Hannon, E.; Jeffries, A. R.; Davies, W.; Hill, M. J.; Anney, R. J.; O'Donovan, M. C.; Mill, J.; Bray, N. J.

10.1101/483636 — genomics — Posted on 2018-11-30

77 CD44v6 expression is a novel predictive marker of therapy response and poor prognosis in gastric cancer patients

Pereira, C.; Ferreira, D.; Lemos, C.; Martins, D.; Mendes, N.; Almeida, D.; Granja, P.; Carneiro, F.; Almeida, R.; Almeida, G. M.; Oliveira, C.

10.1101/468934 — cancer biology — Posted on 2018-11-30

78 Self-agency built with sensorimotor processing: Decoding self-other action attribution in the human brain

Ohata, R.; Asai, T.; Kadota, H.; Shigemasu, H.; Ogawa, K.; Imamizu, H.

10.1101/483420 — neuroscience — Posted on 2018-11-30

79 First genome-wide association study of non-severe malaria in two birth cohorts in Benin: hints towards the involvement of the STAT3 pathway.

Milet, J.; Boland, A.; Luisi, P.; Sabbagh, A.; Sadissou, I.; Saunon, P.; Domingo, N.; Palstra, F.; Gineau, L.; Courtin, D.; Massougbodji, A.; Garcia, A.; Deleuze, J.-F.; Perdry, H.

10.1101/483859 — genetics — Posted on 2018-11-30

80 Estimating fish population abundance by integrating quantitative data on environmental DNA and hydrodynamic modelling

Fukaya, K.; Murakami, H.; Yoon, S.; Minami, K.; Osada, Y.; Yamamoto, S.; Masuda, R.; Kasai, A.; Miyashita, K.; Minamoto, T.; Kondoh, M.

10.1101/482489 — ecology — Posted on 2018-11-30

81 Exploring differentially expressed key genes related to development of follicle by RNA-seq in Peking ducks (Anas Platyrhynchos)

Ren, J.; Sun, C.; Chen, L.; Hu, J.; Huang, X.; Liu, X.; Lu, L.

10.1101/483818 — developmental biology — Posted on 2018-11-30

82 Polymorphism-aware species trees with advanced mutation models, bootstrap and rate heterogeneity

Schrempf, D.; Minh, B. Q.; von Haeseler, A.; Kosiol, C.

10.1101/483479 — bioinformatics — Posted on 2018-11-30

83 Synthetic Biology: Mapping the Patent Landscape

Oldham, P. D.; Hall, S.

10.1101/483826 — synthetic biology — Posted on 2018-11-30

84 A Computational Solution To Improve Biomarker Reproducibility During Long-term Projects

Stearns-Kurosawa, D. J.; Feng, F.; Thompson, M. P.; Thomas, B. E.; Duffy, E. R.; Kim, J.; Kurosawa, S.; Tashjian, J. Y.; Wei, Y.; Andry, C.

10.1101/483800 — pathology — Posted on 2018-11-30

85 Trynity controls epidermal barrier function and respiratory tube maturation in Drosophila by modulating apical extracellular matrix nano-patterning

Itakura, Y.; Inagaki, S.; Wada, H.; Hayashi, S.

10.1101/483768 — developmental biology — Posted on 2018-11-30

86 Trans-omics analyses revealed differences in hormonal and nutritional status between wild and cultured female Japanese eel (Anguilla japonica)

Higuchi, M.; Mekuchi, M.; Hano, T.; Imaizumi, H.

10.1101/483834 — physiology — Posted on 2018-11-30

87 Using EEG to characterise drowsiness during short duration exposure to elevated indoor Carbon Dioxide concentrations

Snow, S.; Boyson, A.; King, M.-F.; Malik, O.; Coutts, L.; Noakes, C.; Gough, H.; Barlow, J.; schraefel, m. c.

10.1101/483750 — physiology — Posted on 2018-11-30

88 Human online adaptation to changes in prior probability

Norton, E. H.; Acerbi, L.; Ma, W. J.; Landy, M. S.

10.1101/483842 — neuroscience — Posted on 2018-11-30

89 qRT-PCR/High Resolution Melting Analyses detected polymorphisms of HSP-70 gene in Zebu cattle

Onasanya, G. O.; Okpeku, M.; Thiruvekander, K. A.; Sreekumar, C.; Tirumurugaan, G. k.; Msalya, G. M.; Sanni, M. T.; Olowofeso, O.; Fafiolu, A. O.; Adeleke, M. A.; Ikeobi, C. O. N.

10.1101/483792 — genetics — Posted on 2018-11-30

90 Extent of the annual Gulf of Mexico hypoxic zone influences microbial community structure

Campbell, L. G.; Thrash, C.; Rabalais, N.; Mason, O.

10.1101/483735 — microbiology — Posted on 2018-11-30

91 The voltage sensing phosphatase (VSP) localizes to the apical membrane of kidney tubule epithelial cells

Ratzan, W.; Rayaprolu, V.; Killian, S. E.; Bradley, R.; Kohout, S.

10.1101/483743 — cell biology — Posted on 2018-11-30

92 A phylogeography of the second plague pandemic revealed through the analysis of historical Y. pestis genomes

Spyrou, M. A.; Keller, M.; Tukhbatova, R. I.; Nelson, E. A.; Andrades Valtuena, A.; Walker, D.; Alterauge, A.; Carty, N.; Fetz, H.; Gourvennec, M.; Hartle, R.; Henderson, M.; von Heyking, K.; Kacki, S.; Knox, E. L.; Later, C.; Peters, J.; Schreiber, J.; Castex, D.; Lösch, S.; Harbeck, M.; Herbig, A.; Bos, K. I.; Krause, J.

10.1101/481242 — evolutionary biology — Posted on 2018-11-30

93 FDA-ARGOS: A Public Quality-Controlled Genome Database Resource for Infectious Disease Sequencing Diagnostics and Regulatory Science Research

Sichtig, H.; Minogue, T.; Yan, Y.; Stefan, C.; Hall, A.; Tallon, L.; Sadzewicz, L.; Nadendla, S.; Klimke, W.; Hatcher, E.; Shumway, M.; Aldea, D.; Allen, J.; Koehler, J.; Slezak, T.; Lovell, S.; Schoepp, R.; Scherf, U.

10.1101/482059 — microbiology — Posted on 2018-11-29

94 Evolutionary, structural and functional explorations of non-coding RNA and protein genetic robustness

Coray, D. S.; Sibaeva, N.; McGimpsey, S.; Gardner, P. P.

10.1101/480087 — molecular biology — Posted on 2018-11-29

95 Time-resolved digital immunoassay for rapid and sensitive quantitation of procalcitonin with plasmonic imaging

Jing, W.; Wang, Y.; Yang, Y.; Wang, Y.; Ma, G.; Wang, S.; Tao, N.

10.1101/483347 — bioengineering — Posted on 2018-11-29

96 Habitat structure drives the evolution of aerial displays in birds

Menezes, J. C. T.; Santos, E. S. A.

10.1101/480053 — evolutionary biology — Posted on 2018-11-29

97 Random Tanglegram Partitions (Random TaPas): An Alexandrian Approach to the Cophylogenetic Gordian Knot

Balbuena, J. A.; Perez-Escobar, O. A. A.; Llopis-Belenguer, C.; Blasco-Costa, I.

10.1101/481846 — evolutionary biology — Posted on 2018-11-29

98 Using expert driven machine learning to enhance dynamic metabolomics data analysis.

Beirnaert, C.; Peeters, L.; Meysman, P.; Bittremieux, W.; Foubert, K.; Custers, D.; Van der Auwera, A.; Cuykx, M.; Pieters, L.; Covaci, A.; Laukens, K.

10.1101/482224 — bioinformatics — Posted on 2018-11-29

99 Hfq CLASH uncovers sRNA-target interaction networks enhancing adaptation to nutrient availability

Iosub, I. A.; Marchioretto, M.; Sy, B.; McKellar, S.; Nieken, K. J.; van Nues, R. W.; Tree, J. J.; Viero, G.; Granneman, S.

10.1101/481986 — systems biology — Posted on 2018-11-29

100 Blood-based molecular biomarker signatures in Alzheimer’s disease: Insights from systems biomedicine analyses

Rahman, M. R.; Islam, T.; Zaman, T.; Shahjaman, M.; Karim, M. R.; Moni, M. A.

10.1101/481879 — systems biology — Posted on 2018-11-29

101 Single Trial Decoding of Scalp EEG Under Naturalistic Stimuli

Tuckute, G.; Hansen, S. T.; Pedersen, N.; Steenstrup, D.; Hansen, L. K.

10.1101/481630 — neuroscience — Posted on 2018-11-29

102 Proof of concept: Malaria rapid diagnostic tests and massively parallel sequencing for surveillance of molecular markers of antimalarial resistance in Bissau, Guinea-Bissau during 2014-2017

Nag, S.; Ursing, J.; Rodrigues, A.; Crespo, M.; Krogsgaard, C.; Lund, O.; Aarestrup, F. M.; Alifrangis, M.; Kofoed, P.-E.

10.1101/481390 — molecular biology — Posted on 2018-11-29

103 Facial Emotions Perceptions In Young Female Students With High-Level Anxiety And Subclinical Panic Disorder. ERP And Behavioral Study

Karpova, V.; Mikhailova, E.; Gerasimenko, N.; Kushnir, N.; Gordeev, S. A.; Alipov, N. N.

10.1101/479899 — neuroscience — Posted on 2018-11-29

104 Yeast-to-hypha transition of Schizosaccharomyces japonicus in response to natural stimuli

Kinnaer, C.; Dudin, O.; Martin, S. G.

10.1101/481853 — microbiology — Posted on 2018-11-29

105 The repressive genome compartment is established early in the cell cycle before forming the lamina associated domains

Luperchio, T. R.; Sauria, M. E. G.; Hoskins, V. E.; Xianrong, W.; DeBoy, E.; Gaillard, M.-C.; Tsang, P.; Pekrun, K.; Ach, R. A.; Yamada, A.; Taylor, J.; Reddy, K. L.

10.1101/481598 — genomics — Posted on 2018-11-29

106 Hi-C detects novel structural variants in HL-60 and HL-60/S4 cell lines

Jacobson, E. C.; Grand, R. S.; Perry, J. K.; Vickers, M. H.; Olins, A. L.; Olins, D. L.; O'Sullivan, J. M.

10.1101/482208 — genomics — Posted on 2018-11-29

107 Impact of deleterious mutations, sexually antagonistic selection and mode of recombination suppression on transitions between male and female heterogamety.

Saunders, P. A.; Neuenschwander, S.; Perrin, N.

10.1101/480749 — evolutionary biology — Posted on 2018-11-29

108 Regulatory changes in pterin and carotenoid genes underlie balanced color polymorphisms in the wall lizard

Andrade, P.; Pinho, C.; Perez i de Lanuza, G.; Afonso, S.; Brejcha, J.; Rubin, C.-J.; Wallerman, O.; Pereira, P.; Sabatino, S. J.; Bellati, A.; Pellitteri-Rosa, D.; Bosakova, Z.; Carretero, M. A.; Feiner, N.; Marsik, P.; Pauperio, F.; Salvi, D.; Soler, L.; While, G. M.; Uller, T.; Font, E.; Andersson, L.; Carneiro, M.

10.1101/481895 — evolutionary biology — Posted on 2018-11-29

109 Neuropathy and neural plasticity in the subcutaneous white adipose depot.

Blaszkiewicz, M.; Willows, J. W.; Dubois, A. L.; Waible, S.; Johnson, C. P.; DiBello, K.; Lyons, L. L.; Breeding, W. P.; Tilbury, K. B.; Michael, M.; Harrison, B.; Townsend, K. L.

10.1101/480095 — neuroscience — Posted on 2018-11-29

110 Functional Anatomy, Biomechanical Performance Capabilities and Potential Niche of StW 573: an Australopithecus Skeleton (circa 3.67 Ma) From Sterkfontein Member 2, and its significance for The Last Common Ancestor of the African Apes and for Hominin Origins

Crompton, R. H.; McClymont, J.; Thorpe, S. K. S.; Sellers, W. I.; Heaton, J.; Pickering, T. R.; Pataky, T.; Stratford, D.; Carlson, K.; Jashashvili, T.; Beaudet, A.; Bruxelles, L.; Goh, C.; Kuman, K.; Clarke, R.

10.1101/481556 — paleontology — Posted on 2018-11-29

111 Eye-movements as a signature of age-related differences in global planning strategies for spatial navigation

Tartaglia, E. M.; Boucly, C.; Tatur, G.; Arleo, A.

10.1101/481788 — neuroscience — Posted on 2018-11-29

112 Beat-Relevant Signals in Auditory Cortical Responses to Musical Excerpts

Rajendran, V. G.; Harper, N. S.; Schnupp, J. W. H.

10.1101/481473 — neuroscience — Posted on 2018-11-29

113 Metabolism-Induced Oxidative Stress and DNA Damage Selectively Trigger Genome Instability in Polyploid Cells

Thomson, G. J.; Hernon, C.; Austriaco, N.; Shapiro, R. S.; Belenky, P.; Bennett, R. J.

10.1101/480822 — microbiology — Posted on 2018-11-29

114 High-throughput functional analysis of lncRNA core promoters elucidates rules governing tissue-specificity

Mattioli, K.; Volders, P.-J.; Gerhardinger, C.; Lee, J. C.; Maass, P. G.; Mele, M.; Rinn, J. L.

10.1101/482232 — genomics — Posted on 2018-11-29

115 EvoMining reveals the origin and fate of naturalproducts biosynthetic enzymes

Selem-Mojica, N.; Aguilar, C.; Gutierrez-Garcia, k.; Martinez-Guerrero, C.; Barona-Gomez, F.

10.1101/482273 — bioinformatics — Posted on 2018-11-29

116 Detecting HTS Barcode Contamination

Clark, M. A.; Stankiewicz, S. H.; Barronette, V.; Ricke, D. O.

10.1101/482166 — bioinformatics — Posted on 2018-11-29

117 OLFACTORY SPATIAL ATTENTION: NEURAL STRUCTURAL CONNECTIVITY REVEALED

Elumalai, G.; Chatterjee, H.; Syed, I. S.; Brown, V.; Sober, L. A.; Ghanta, N. A. S. V.; Chandrasekhar, P.; Venkatesan, A.; Sewram, N.; Muthukumaran, N. R.; Harkrishna, G.; Vamsi, N. M.; Osakwe, N. S.

10.1101/483446 — neuroscience — Posted on 2018-11-29

118 Accurate action potential inference from a calcium sensor protein through biophysical modeling

Greenberg, D. S.; Wallace, D. J.; Voit, K.-M.; Wuertenberger, S.; Czubayko, U.; Monsees, A.; Handa, T.; Vogelstein, J. T.; Seifert, R.; Groemping, Y.; Kerr, J. N.

10.1101/479055 — neuroscience — Posted on 2018-11-29

119 Decoding the reproductive system of the olive fruit fly, Bactrocera oleae

Gregoriou, M.-E.; Reczko, M.; Tsoumani, K.; Mathiopoulos, K.

10.1101/481523 — molecular biology — Posted on 2018-11-29

120 Protective low avidity anti-tumour CD8+ T cells are selectively attenuated by regulatory T cells

Sugiyarto, G.; Prossor, D.; Dadas, O.; Elliott, T.; James, E.

10.1101/481515 — immunology — Posted on 2018-11-29

121 ACAT: A Fast and Powerful P-value Combination Method for Rare-variant Analysis in Sequencing Studies

Liu, Y.; Chen, S.; Li, Z.; Morrison, A. C.; Boerwinkle, E.; Lin, X.

10.1101/482240 — genetics — Posted on 2018-11-29

122 Assessing the potential for assisted gene flow using past introduction of Norway spruce in Southern Sweden: Local adaptation and genetic basis of quantitative traits in trees.

Milesi, P.; Berlin, M.; Chen, J.; Orsucci, M.; Lili, L.; Jansonn, G.; Karlsson, B.; Lascoux, M.

10.1101/481614 — evolutionary biology — Posted on 2018-11-29

123 A Novel Method for Quantifying Traction Forces from Hexagonal Micropatterned Features on Deformable Poly-Dimethyl Siloxane Sheets

Griffin, B. P.; Largaespada, C. J.; Rinaldi, N. A.; Lemmon, C. A.

10.1101/479790 — bioengineering — Posted on 2018-11-29

124 A schizophrenia risk gene, NRGN, bidirectionally modulates synaptic plasticity via regulating the neuronal phosphoproteome

Hwang, H.; Szucs, M. J.; Ding, L. J.; Allen, A.; Haensgen, H.; Gao, F.; Andrade, A.; Pan, J. Q.; Carr, S. A.; Ahmad, R.; Xu, W.

10.1101/481291 — neuroscience — Posted on 2018-11-29

125 Ribozyme-Mediated, Multiplex CRISPR Gene Editing and CRISPRi in Plasmodium yoelii

Walker, M. P.; Lindner, S. E.

10.1101/481416 — microbiology — Posted on 2018-11-29

126 A novel polyphasic identification system for genus Trichoderma

Dou, K.; Lu, Z.; Wu, Q.; Ni, M.; Yu, C.; Wang, M.; Li, Y.; Wang, X.; Xie, H.; Chen, J.

10.1101/481382 — microbiology — Posted on 2018-11-29

127 The Hi-Culfite assay reveals relationships between chromatin contacts and DNA methylation state

Stamenova, E. K.; Durand, N.; Dudchenko, O.; Shamim, M. S.; Huang, S.-C.; Jiang, Y.; Bochkov, I. D.; Rao, S. S. P.; Lander, E. S.; Gnirke, A.; Aiden, E. L.

10.1101/481283 — genomics — Posted on 2018-11-29

128 Seasonal diets overwhelm host species in shaping the gut microbiota of Yak and Tibetan sheep

Wei, X.; Cheng, F.; Shi, H.; Zhou, X.; Li, B.; Wang, L.; Wang, W.; Zhang, J.

10.1101/481374 — ecology — Posted on 2018-11-29

129 Heterozygote calling in significantly inbred populations

Shah, R.; Whan, A.

10.1101/481101 — bioinformatics — Posted on 2018-11-29

130 The transcriptional landscape of cortical interneurons underlies in-vivo brain function and schizophrenia risk

Anderson, K. M.; Collins, M. A.; Chin, R.; Ge, T.; Rosenberg, M. D.; Holmes, A. J.

10.1101/481036 — neuroscience — Posted on 2018-11-29

131 Mechanism of action of methotrexate against Zika virus

Beck, S.; Bernatchez, J. A.; Zhu, Z.; Oliveira, M. F.; Smith, D. M.; Siqueira-Neto, J. L.

10.1101/481440 — microbiology — Posted on 2018-11-29

132 Real-time monitoring of bacterial growth and fast antimicrobial susceptibility tests exploiting multiple light scattering

Han, S.; Kim, H.; Park, J.; Lee, S.; Lee, K.; Kim, J.-K.; Chung, H. J.; Park, Y.

10.1101/481184 — microbiology — Posted on 2018-11-29

133 Simulation of Karyotype Evolution and Biodiversity in Asexual and Sexual Reproduction

Ying, A.; Ye, J. C.; Jiang, H.; Horne, S. D.; Abdallah, B.; Liu, G.; Ying, H.; Heng, H. H.

10.1101/481275 — evolutionary biology — Posted on 2018-11-29

134 Robotic platform for microinjection into single cells in intact tissue

Shull, G.; Haffner, C.; Huttner, W. B.; Taverna, E.; Kodandaramaiah, S. B.

10.1101/480004 — neuroscience — Posted on 2018-11-29

135 Habitat loss-induced tipping points in metapopulations with facilitation

Sardanyes, J.; Pinero, J.; Sole, R.

10.1101/481176 — ecology — Posted on 2018-11-29

136 Ergodicity analysis and antithetic integral control of a class of stochastic reaction networks with delays

Briat, C.; Khammash, M.

10.1101/481085 — systems biology — Posted on 2018-11-29

137 Dynamic properties of internal noise probed by modulating binocular rivalry

Baker, D.; Richard, B.

10.1101/480988 — neuroscience — Posted on 2018-11-29

138 Intelligible speech synthesis from neural decoding of spoken sentences

Anumanchipalli, G. K.; Chartier, J.; Chang, E. F.

10.1101/481267 — neuroscience — Posted on 2018-11-29

139 Ancient Yersinia pestis genomes from across Western Europe reveal early diversification during the First Pandemic (541-750)

Keller, M.; Spyrou, M. A.; Scheib, C. L.; Kröpelin, A.; Haas-Gebhard, B.; Päffgen, B.; Haberstroh, J.; Ribera i Lacomba, A.; Raynaud, C.; Cessford, C.; Stadler, P.; Nägele, K.; Neumann, G. U.; Bates, J. S.; Trautmann, B.; Inskip, S.; Peters, J.; Robb, J. E.; Kivisild, T.; McCormick, M.; Bos, K. I.; Harbeck, M.; Herbig, A.; Krause, J.

10.1101/481226 — evolutionary biology — Posted on 2018-11-29

140 Neural circuit robustness to acute, global physiological perturbations

Ratliff, J.; Marder, E.; O'Leary, T.

10.1101/480830 — bioinformatics — Posted on 2018-11-29

141 Bedsect: An integrated web server application to perform intersection, visualization and functional annotation of genomic regions from multiple datasets

Mishra, G. P.; Ghosh, A.; Jha, A.; Raghav, S. K.

10.1101/481333 — bioinformatics — Posted on 2018-11-29

142 Neurocognitive and psychiatric markers for addiction: Common vs. specific (endo)phenotypes for opiate and stimulant dependence

Long, E. C.; Kaneva, R.; Vasilev, G.; Moeller, F. G.; Vassileva, J.

10.1101/480970 — neuroscience — Posted on 2018-11-29

143 Biofilm/Persister/Stationary Phase Bacteria Cause More Severe Disease Than Log Phase Bacteria II Infection with Persister Forms of Staphylococcus aureus Causes a Chronic Persistent Skin Infection with More Severe Lesion that Takes Longer to Heal and is not Eradicated by the Current Recommended Treatment in Mice

Yee, R.; Yuan, Y.; Brayton, C.; Leal, A. T.; Feng, J.; Shi, W.; Behrens, A.; Zhang, Y.

10.1101/476465 — microbiology — Posted on 2018-11-29

144 Cyclic, condition-independent activity in primary motor cortex predicts corrective movement behavior

Rouse, A. G.

10.1101/453746 — neuroscience — Posted on 2018-11-29

145 Functional lability of RNA-dependent RNA polymerases in animals

Pinzon, N.; Bertrand, S.; Subirana, L.; Busseau, I.; Escriva, H.; Seitz, H.

10.1101/339820 — evolutionary biology — Posted on 2018-11-29

146 Action-specific feature processing in the human visual cortex

Monaco, S.; Chen, Y.; Menghi, N.; Crawford, J. D.

10.1101/420760 — neuroscience — Posted on 2018-11-29

147 Dopamine regulates the exploration-exploitation trade-off in rats

Cinotti, F.; Fresno, V.; Aklil, N.; Coutureau, E.; Girard, B.; Marchand, A.; Khamassi, M.

10.1101/482802 — neuroscience — Posted on 2018-11-29

148 A theory for how the antigen presentation profile influences the timing of T-cell detection

Carignano, A.; Dalchau, N.

10.1101/480301 — immunology — Posted on 2018-11-29

149 Evaluating the Genome and Resistome of Extensively Drug-Resistant Klebsiella pneumoniae using Native DNA and RNA Nanopore Sequencing

Pitt, M.; Nguyen, S. H. H.; Duarte, T. P. S.; Blaskovich, M.; Cooper, M.; Coin, L.

10.1101/482661 — genomics — Posted on 2018-11-29

150 Irregular chromatin: packing density, fiber width and occurrence of heterogeneous clusters

Bajpai, G.; Padinhateeri, R.

10.1101/453126 — biophysics — Posted on 2018-11-29

151 A stress-response-related inter-compartmental signalling pathway regulates embryonic cuticle integrity in Arabidopsis

Creff, A.; Brocard, L.; Joubes, J.; Taconnat, L.; Doll, N. M.; Pascal, S.; Galletti, R.; Marsollier, A.-C.; Moussu, S.; Widiez, T.; Domergue, F.; Ingram, G. C.

10.1101/477109 — plant biology — Posted on 2018-11-29

152 Highly efficient multiplex human T cell engineering without double-strand breaks using Cas9 base editors

Webber, B. R.; Lonetree, C.-l.; Kluesner, M. G.; Johnson, M. J.; Pomeroy, E. J.; Diers, M. D.; Lahr, W. S.; Draper, G.; Slipek, N. J.; Lovendahl, K. N.; McElroy, A.; Gordon, W. R.; Osborn, M. J.; Moriarity, B. S.

10.1101/482497 — genetics — Posted on 2018-11-29

153 Cleft lip/palate and educational attainment: cause, consequence, or correlation? A Mendelian randomization study

Dardani, C.; Howe, L.; Stergiakouli, E.; Wren, Y.; Humphries, K.; Davies, A.; Ho, K.; Mangold, E.; Ludwig, K.; Relton, C. L.; Davey Smith, G.; Lewis, S. J.; Sandy, J.; Davies, N. M.; Sharp, G.

10.1101/434126 — genetics — Posted on 2018-11-29

154 Integrated ligand and structure-based investigation of structural requirements for silent information regulator activation

Gupta, A. K.; Choi, S.

10.1101/481952 — biophysics — Posted on 2018-11-29

155 Genetic selection for small molecule production in competitive microfluidic droplets

Millet, L.; Velez, J.; Michener, J.

10.1101/469007 — synthetic biology — Posted on 2018-11-29

156 Electrical Fields Induced Inside the Rat Brain with Skin, Skull, and Dural Placements of the Current Injection Electrode

Asan, A. S.; Gok, S.; Sahin, M.

10.1101/402578 — neuroscience — Posted on 2018-11-29

157 Quantification of Structural Brain Connectivityvia a Conductance Model

Frau-Pascual, A.; Fogarty, M.; Fischl, B.; Yendiki, A.; Aganj, I.; Alzheimer's Disease Neuroimaging Initiative,

10.1101/415489 — neuroscience — Posted on 2018-11-29

158 Hypoxic environment promotes barrier formation in human intestinal epithelial cells through regulation of miRNA-320a expression

Münchau, S. M.; Deutsch, R.; Hielscher, T.; Heber, N.; Niesler, B.; Stanifer, M. L.; Boulant, S.

10.1101/483206 — molecular biology — Posted on 2018-11-29

159 PUMA: A tool for processing 16S rRNA taxonomy data for analysis and visualization

Mitchell, K.; Dao, C.; Freise, A.; Mangul, S.; Moberg Parker, J.

10.1101/482380 — microbiology — Posted on 2018-11-29

160 Impacts of landscape composition, marginality of distribution, soil fertility, and climatic stability on the patterns of woody plant endemism in the Cerrado

Vidal, J. d. D.; de Souza, A. P.; Koch, I.

10.1101/362475 — ecology — Posted on 2018-11-29

161 YAP independently regulates cell size and population growth dynamics via non-cell autonomous mediators

Mugahid, D.; Kalocsay, M.; Gruver, S.; Peshkin, L.; Kirschner, M. W.

10.1101/482836 — cell biology — Posted on 2018-11-29

162 Failure of complex systems, cascading disasters, and the onset of disease

Webster, A. J.

10.1101/476242 — cancer biology — Posted on 2018-11-29

163 Neuronal activity drives homeostatic sleep through engagement of the hypothalamic neuropeptide galanin

Reichert, S.; Pavon Arocas, O.; Rihel, J.

10.1101/479634 — neuroscience — Posted on 2018-11-29

164 Population dynamics and entrainment of basal ganglia pacemakers are shaped by their dendritic arbors

Tiroshi, L.; Goldberg, J. A.

10.1101/388504 — neuroscience — Posted on 2018-11-29

165 EEG-based detection of the attended speaker and the locus of auditory attention with convolutional neural networks

Deckers, L.; Das, N.; Hossein Ansari, A.; Bertrand, A.; Francart, T.

10.1101/475673 — neuroscience — Posted on 2018-11-29

166 Linked mutations at adjacent nucleotides have shaped human population differentiation and protein evolution

Prendergast, J. G. D.; Pugh, C.; Harris, S.; Hume, D.; Deary, I.; Beveridge, A.

10.1101/329292 — genomics — Posted on 2018-11-29

167 A Meta-Analysis of Alzheimer’s Disease Brain Transcriptomic Data

Patel, H.; Dobson, R. J. B.; Newhouse, S. J.

10.1101/480459 — genetics — Posted on 2018-11-29

168 Molecular requirements for transition from lateral to end-on microtubule binding and dynamic coupling

Chakraborty, M.; Tarasovetc, E.; Zaytsev, A. V.; Godzi, M.; Figueiredo, A. C.; Ataullakhanov, F. I.; Grishchuk, E. L.

10.1101/481713 — cell biology — Posted on 2018-11-29

169 Multimodal integration and vividness in the angular gyrus during episodic encoding and retrieval

Tibon, R.; Fuhrmann, D.; Levy, D. A.; Simons, J.; Henson, R. N.

10.1101/393553 — neuroscience — Posted on 2018-11-29

170 Telomere length, arsenic exposure and risk of basal cell carcinoma of skin

Srinivas, N.; Rachakonda, S.; Hielscher, T.; Calderazzo, S.; Rudnai, P.; Gurzau, E.; Koppova, K.; Fletcher, T.; Kumar, R.

10.1101/465732 — genetics — Posted on 2018-11-29

171 A proactive genotype-to-patient-phenotype map for cystathionine beta-synthase

Sun, S.; Weile, J.; Verby, M.; Cote, A. G.; Wu, Y.; Fotiadou, I.; Kitaygorodsky, J.; Rine, J.; Jesina, P.; Kozich, V.; Roth, F. P.

10.1101/473983 — genetics — Posted on 2018-11-29

172 Reproduction has different costs for immunity and parasitism in a wild mammal

Albery, G. F.; Watt, K.; Keith, R.; Morris, S.; Morris, A.; Kenyon, F.; Nussey, D. H.; Pemberton, J. M.

10.1101/472597 — ecology — Posted on 2018-11-29

173 Molecular mimicry in deoxy-nucleotide catalysis: the structure of Escherichia coli dGTPase reveals the molecular basis of dGTP selectivity

Barnes, C. O.; Wu, Y.; Song, J.; Lin, G.; Baxter, E. L.; Brewster, A. S.; Nagarajan, V.; Holmes, A.; Soltis, M.; Ahn, J.; Cohen, A. E.; Calero, G.

10.1101/385401 — biophysics — Posted on 2018-11-29

174 The evolution of infanticide by females in mammals

Lukas, D.; Huchard, E.

10.1101/405688 — animal behavior and cognition — Posted on 2018-11-29

175 Bottom-up sensory processing can decrease activity and functional connectivity in the default mode like network in rats.

Hinz, R.; Peeters, L. M.; Shah, D.; Missault, S.; Belloy, M.; Vanreusel, V.; Malekzadeh, M.; Verhoye, M.; Van der Linden, A.; Keliris, G. A. A.

10.1101/482638 — neuroscience — Posted on 2018-11-29

176 Signatures of negative frequency dependent selection in colonisation factors and the evolution of a multi-drug resistant lineage of Escherichia coli

McNally, A.; Kallonen, T.; Connor, C.; Abudahab, K.; Aanensen, D.; Horner, C.; Peacock, S.; Parkhill, J.; Croucher, N.; Corander, J.

10.1101/400374 — microbiology — Posted on 2018-11-29

177 Quantification of miscarriage sex bias in England and Wales, 1993-2017

Mulley, J. F.

10.1101/418186 — epidemiology — Posted on 2018-11-29

178 Large-Scale Comparative Analysis of Codon Models Accounting for Protein and Nucleotide Selection

Davydov, I. I.; Salamin, N.; Robinson-Rechavi, M.

10.1101/174839 — bioinformatics — Posted on 2018-11-29

179 Applicability of subcortical EEG metrics of synaptopathy to older listeners with impaired audiograms

Garrett, M.; Verhulst, S.

10.1101/479246 — neuroscience — Posted on 2018-11-29

180 Genetic differentiation and intrinsic genomic features explain variation in recombination hotspots among cocoa tree populations

Schwarzkopf, E. J.; Motamayor, J. C.; Cornejo, O. E.

10.1101/482299 — genomics — Posted on 2018-11-29

181 Prediction Interval Ranking Score: Identification of Invariant Expression from Time Series

Crowell, A. M.; Loros, J. J.; Dunlap, J. C.

10.1101/482794 — bioinformatics — Posted on 2018-11-29

182 A learned embedding for efficient joint analysis of millions of mass spectra

May, D. H.; Bilmes, J.; Noble, W. S.

10.1101/483263 — bioinformatics — Posted on 2018-11-29

183 A synthetic morphogenic perceptory cell

Gavriljuk, K.; Ghasemalizadeh, F.; Scocozza, B.; Nandan, A. P.; Seidel, H.; Schmick, M.; Koseska, A.; Bastiaens, P.

10.1101/481887 — synthetic biology — Posted on 2018-11-29

184 Integrative isotopic Paleoecology (δ13C, δ18O) of a Late Pleistocene vertebrate community from Sergipe, NE Brazil

Dantas, M. A.; Cherkinsky, A.; Bonfim Lessa, C. M.; Vilaboim Santos, L.; Cozzuol, M. A.; Omena, E. C.; Silva, J. L. L.; Sial, A. N.; Bocherens, H.

10.1101/482752 — paleontology — Posted on 2018-11-29

185 APOE4 is Associated with Differential Regional Vulnerability to Bioenergetic Deficits in Aged APOE Mice

Nuriel, T.; Larrea, D.; Guilfoyle, D. N.; Pirhaji, L.; Shannon, K.; Arain, H.; Ashok, A.; Pera, M.; Chen, Q.; Dillman, A. A.; Figueroa, H. Y.; Cookson, M. R.; Gross, S. S.; Fraenkel, E.; Duff, K. E.; Area-Gomez, E.

10.1101/482422 — neuroscience — Posted on 2018-11-29

186 Early Detection of Neurological Dysfunction Using Blood Cell Transcript Profiles

Moni, M. A.; Rana, H. K.; Islam, M. B.; Ahmed, M. B.; Lio', P.; Hasan, M. A. M.; Huq, F.; Quinn, J.

10.1101/483016 — bioinformatics — Posted on 2018-11-29

187 Molecular fingerprints for a novel glucosamine kinase family in Actinobacteria

Manso, J. A.; Nunes-Costa, D.; Macedo-Ribeiro, S.; Empadinhas, N.; Pereira, P. J.

10.1101/482810 — biochemistry — Posted on 2018-11-29

188 Flagellar stators stimulate c-di-GMP production by Pseudomonas aeruginosa

Baker, A. E.; Webster, S. S.; Diepold, A.; Kuchma, S. L.; Bordeleau, E.; Armitage, J. P.; O'Toole, G.

10.1101/483339 — microbiology — Posted on 2018-11-29

189 A conserved motif of Porphyromonas Type IX secretion effectors C-terminal secretion signal specifies interactions with the PorKLMN core complex

Vincent, M. S.; Chabalier, M.; Cascales, E.

10.1101/483123 — microbiology — Posted on 2018-11-29

190 A SIMPLE APPROXIMATION TO THE BIAS IN THE GENETIC EFFECT ESTIMATES WHEN MULTIPLE DISEASE STATES SHARE A CLINICAL DIAGNOSIS

Lobach, I.; Kim, I.; Alekseyenko, A.; Lobach, S.; Zhang, L.

10.1101/483198 — genetics — Posted on 2018-11-29

191 Insect egg size and shape evolve with ecology, not developmental rate

Church, S. H.; Donoughe, S.; de Medeiros, B. A. S.; Extavour, C. G.

10.1101/471946 — evolutionary biology — Posted on 2018-11-29

192 Early detection of retinal alteration by visible and near-infrared optical coherence tomography (vnOCT) in a dexamethasone-induced ocular hypertension mouse model

Song, W.; Fu, S.; Song, S.; Zhang, S.; Zhang, L.; Ness, S.; Desai, M.; Yi, J.

10.1101/478719 — bioengineering — Posted on 2018-11-29

193 Hypoxia-enhanced Blood-Brain Barrier Chip recapitulates human barrier function, drug penetration, and antibody shuttling properties

Park, T.-E.; Mustafaoglu, N.; Herland, A.; Hasselkus, R. M.; Mannix, R.; FitzGerald, E. A.; Prantil-Baun, R.; Watters, A.; Henry, O.; Benz, M.; Sanchez, H.; McCrea, H. J.; Christova Goumnerova, L.; Song, H. W.; Palecek, S. P.; Shusta, E.; Ingber, D. E.

10.1101/482463 — bioengineering — Posted on 2018-11-29

194 Modular, part-based control of gene expression response time using protein degradation tags

Jones, E. M.; Monette, C. E.; Marken, J. P.; Dhawan, S.; Gibney, T.; Li, C.; Liu, W.; Luz-Ricca, A.; Ren, X.; Zheng, X.; Saha, M.

10.1101/482331 — bioengineering — Posted on 2018-11-29

195 A multiscale stratigraphic investigation of the context of StW 573 Little Foot and Member 2, Sterkfontein Caves, South Africa

Bruxelles, L.; Stratford, D. J.; Maire, R.; Pickering, T. R.; Heaton, J. L.; Beaudet, A.; Kuman, K.; Crompton, R.; Carlson, K. J.; Jashashvili, T.; McClymont, J.; Leader, G.; Clarke, R. J.

10.1101/482711 — paleontology — Posted on 2018-11-29

196 Common molecular biomarker signatures in blood and brain of Alzheimers disease

Rahman, M. R.; Islam, T.; Shahjaman, M.; Holsinger, D.; Moni, M. A.

10.1101/482828 — neuroscience — Posted on 2018-11-29

197 Network-based identification of genetic factors in Ageing, lifestyle and Type 2 Diabetes that Influence in the progression of Alzheimer’s disease

Chowdhury, U. N.; Islam, M. B.; Ahmad, S.; Moni, M. A.

10.1101/482844 — molecular biology — Posted on 2018-11-29

198 Spatial structure increases the benefits of antibiotic production in Streptomyces griseus

Westhoff, S.; Otto, S. B.; Swinkels, A.; Bode, B.; van Wezel, G. P.; Rozen, D. E.

10.1101/482786 — microbiology — Posted on 2018-11-29

199 Genotype network intersections promote evolutionary innovation

Bendixsen, D. P.; Collet, J.; Ostman, B.; Hayden, E. J.

10.1101/483040 — evolutionary biology — Posted on 2018-11-29

200 The fine-scale landscape of immunity and parasitism in a wild ungulate population

Albery, G. F.; Becker, D. J.; Kenyon, F.; Nussey, D. H.; Pemberton, J. M.

10.1101/483073 — ecology — Posted on 2018-11-29

201 An agent-based framework for improving wildlife disease surveillance: A case study of chronic wasting disease in Missouri white-tailed deer.

Belsare, A.; Gompper, M. E.; Keller, B.; Sumners, J.; Hansen, L.; Millspaugh, J.

10.1101/478610 — ecology — Posted on 2018-11-29

202 A Teensy microcontroller-based interface for optical imaging camera control during behavioral experiments

Romano, M.; Bucklin, M.; Mehrotra, D. R.; Kessel, R.; Gritton, H.; Han, X.

10.1101/475350 — neuroscience — Posted on 2018-11-29

203 Integrating prediction errors at two time scales permits rapid recalibration of speech sound categories

Olasagasti, I.; Giraud, A.-L.

10.1101/479089 — neuroscience — Posted on 2018-11-29

204 Peripheral blood exosomes pass blood-brain-barrier and induce glial cell activation

Morales-Prieto, D. M.; Stojiljkovic, M.; Diezel, C.; Streicher, P.-E.; Roestel, F.; Lindner, J.; Weis, S.; Schmeer, C.; Marz, M.

10.1101/471409 — neuroscience — Posted on 2018-11-29

205 Divergent mesolimbic dopamine circuits support alcohol-seeking triggered by discrete cues and contexts

Valyear, M. D.; Glovaci, I.; Zaari, A.; Lahlou, S.; Trujillo-Pisanty, I.; Chapman, C. A.; Chaudhri, N.

10.1101/475343 — neuroscience — Posted on 2018-11-29

206 Oculomotor nerve requires an early interaction with muscle precursors for nerve guidance and branch patterning

Bjorke, B.; Weller, K. G.; Robinson, G. E.; Vesser, M.; Chen, L.; Gage, P. J.; Gould, T. W.; Mastick, G. S.

10.1101/483396 — neuroscience — Posted on 2018-11-29

207 Computational psychiatry 2.0 and implications for stress research

Pashkov, A. A.; Berebin, M. A.

10.1101/483164 — neuroscience — Posted on 2018-11-29

208 Genetic combination risk for schizophrenia

Oishi, K.; Iyo, M.; Niitsu, T.; Takase, M.; Sato, Y.; Kanahara, N.

10.1101/478958 — neuroscience — Posted on 2018-11-29

209 An in vivo knockdown strategy reveals multiple functions for circMbl

Reddy Pamudurti, N.; Konakondla-Jacob, V. V.; Krishnamoorthy, A.; Ashwal-Fluss, R.; Bartok, O.; Wust, S.; Seitz, K.; Maya, R.; Lerner, N.; Patop, I. L.; Rizzoli, S.; Beautus, T.; Kadener, S.

10.1101/483271 — molecular biology — Posted on 2018-11-29

210 Rapid Sequencing of Multiple RNA Viruses in their Native Form

Wongsurawat, T.; Jenjaroenpun, P.; Taylor, M. K.; Lee, J.; Tolardo, A. L.; Parvathareddy, J.; Kandel, S.; Wadley, T. D.; Kaewnapan, B.; Athipanyasilp, N.; Skidmore, A. M.; Chung, D.; Chaimayo, C.; Whitt, M.; Kantakamalakul, W.; Sutthent, R.; Horthongkham, N.; Ussery, D. W.; Jonsson, C. B.; Nookaew, I.

10.1101/482471 — genomics — Posted on 2018-11-29

211 Meiotic effects of MSH4 copy number variation support an adaptive role for post-polyploidy gene loss

Gonzalo, A.; Lucas, M.-O.; Charpentier, C.; Lloyd, A. H.; Jenczewski, E.

10.1101/482521 — genetics — Posted on 2018-11-29

212 Functional disease architectures reveal unique biological role of transposable elements

Hormozdiari, F. I.; Geijn, B. v. d. v. d.; Nasser, J.; Weissbrod, O.; Gazal, S.; Ju, C. J.- T.; O'Connor, L.; Hujoel, M. L. A.; Engreitz, J.; Hormozdiari, F.; Price, A.

10.1101/482281 — genetics — Posted on 2018-11-29

213 Mountain lion genomes provide insights into genetic rescue of inbred populations

Saremi, N. F.; Supple, M. A.; Byrne, A.; Cahill, J. A.; Coutinho, L. L.; Dalen, L.; Figueiro, H. V.; Johnson, W. E.; Milne, H. J.; O'Brien, S. J.; O'Connell, B.; Onorato, D. P.; Riley, S. P.; Sikich, J. A.; Stahler, D. R.; Villela, P. M. S.; Vollmers, C.; Wayne, R. K.; Eizirik, E.; Corbett-Detig, R. B.; Green, R. E.; Wilmers, C. C.; Shapiro, B.

10.1101/482315 — evolutionary biology — Posted on 2018-11-29

214 Asymmetric secretion in budding yeast reinforces daughter cell identity

Thomas, V. N.; Weiss, E. L.; Brace, J. L.

10.1101/483388 — cell biology — Posted on 2018-11-29

215 Bioinformatics Approach to Identify Diseasome and Comorbidities Effect of Mitochondrial Dysfunctions on the Progression of Neurological Disorders

Satu, M. S.; Howlader, K. C.; Akhund, T. M. N. U.; Haq, F.; Quinn, J. M. W.; Moni, M. A.

10.1101/483065 — bioinformatics — Posted on 2018-11-29

216 Generative modeling and latent space arithmetics predict single-cell perturbation response across cell types, studies and species

Lotfollahi, M.; Wolf, F. A.; Theis, F. J.

10.1101/478503 — bioinformatics — Posted on 2018-11-29

217 RISC: robust integration of single-cell RNA-seq datasets with different extents of cell cluster overlap

Liu, Y.; Wang, T.; Zheng, D.

10.1101/483297 — bioinformatics — Posted on 2018-11-29

218 Structural basis of Cullin-2 RING E3 ligase regulation by the COP9 signalosome

Faull, S. V.; Lau, A.; Martens, C.; Ahdash, Z.; Yebenes, H.; Schmidt, C.; Beuron, F.; Cronin, N. B.; Morris, E. P.; Politis, A.

10.1101/483024 — biochemistry — Posted on 2018-11-29

219 On Using Local Ancestry to Characterize the Genetic Architecture of Human Phenotypes: Genetic Regulation of Gene Expression in Multiethnic or Admixed Populations as a Model

Zhong, Y.; Perera, M. A.; Gamazon, E. R.

10.1101/483107 — bioinformatics — Posted on 2018-11-29

220 Learning Molecule Drug Function from Structure Representations with Deep Neural Networks or Random Forests

Meyer, J. G.; Liu, S.; Miller, I. J.; Gitter, A.; Coon, J. J.

10.1101/482877 — bioinformatics — Posted on 2018-11-29

221 A neurocognitive investigation of the impact of socialising with a robot on empathy for pain

Cross, E. S.; Riddoch, K. A.; Pratts, J.; Titone, S.; Chaudhury, B.; Hortensius, R.

10.1101/470534 — neuroscience — Posted on 2018-11-29

222 Using subthreshold events to characterize the functional architecture of electrically coupled networks

Lefler, Y.; Amsalem, O.; Segev, I.; Yarom, Y.

10.1101/483156 — neuroscience — Posted on 2018-11-29

223 Immunological Diversity with Similarity

Arora, R.; Burke, H. M.; Arnaout, R.

10.1101/483131 — immunology — Posted on 2018-11-29

224 NanoARG: A web service for identification of antimicrobial resistance elements from nanopore-derived environmental metagenomes

Arango-Argoty, G. A.; Dai, D.; Pruden, A.; Vikesland, P.; Heath, L. S.; Zhang, L.

10.1101/483248 — bioinformatics — Posted on 2018-11-29

225 Activity-is better than connectivity-neurofeedback training in Huntington’s disease

Papoutsi, M.; Magerkurth, J.; Josephs, O.; Pepes, S. E.; Ibitoye, T.; Reilmann, R.; Hunt, N.; Payne, E.; Weiskopf, N.; Langbehn, D.; Rees, G.; Tabrizi, S. J.

10.1101/481903 — neuroscience — Posted on 2018-11-29

226 The Drosophila fussel gene is required for bitter gustatory neuron differentiation acting within an Rpd3 dependent chromatin modifying complex

Rass, M.; Oestreich, S.; Guetter, S.; Fischer, S.; Schneuwly, S.

10.1101/481721 — developmental biology — Posted on 2018-11-29

227 Serum-dependent and independent regulation of PARP2

Sun, Q.; Gatie, M. I.; Kelly, G. M.

10.1101/483289 — cell biology — Posted on 2018-11-29

228 Glia mediated ionic balance in the stem cell niche is required for the proper proliferation of neurogenic tissues and wiring of neural circuits.

Plazaola-Sasieta, H.; Zhu, Q.; Gaitan-Penas, H.; Rios, M.; Estevez, R.; Morey, M.

10.1101/482778 — developmental biology — Posted on 2018-11-29

229 The interaction between the tumour suppressor Dlg1 and the MAGUK protein CASK is required for oriented cell division in mammalian epithelia

Porter, A. P.; White, G.; Mack, N. A.; Malliri, A.

10.1101/482588 — cell biology — Posted on 2018-11-29

230 The novel Dbl homology/BAR domain protein, MsgA, of Talaromyces marneffei regulates yeast morphogenesis during growth inside host cells

Weerasinghe, H.; Bugeja, H. E.; Andrianopoulos, A.

10.1101/481408 — cell biology — Posted on 2018-11-29

231 Organ transformation by environmental disruption of epigenetic memory

Snir, O.; Elgart, M.; Ciabrelli, F.; Dagan, S.; Aviezer, I.; Stoops, E.; Cavalli, G.; Soen, Y.

10.1101/482216 — developmental biology — Posted on 2018-11-29

232 A serum-free and insulin-supplemented cell culture medium ensures fatty acid synthesis gene activation in cancer cells

Wu, S.; Naar, A. M.

10.1101/479964 — cancer biology — Posted on 2018-11-29

233 Active Receptor Tyrosine Kinases, but not Brachyury, are sufficient to trigger chordoma in zebrafish

D'Agati, G.; Cabello, E. M.; Frontzek, K.; Rushing, E. J.; Klemm, R.; Robinson, M.; White, R. M.; Mosimann, C.; Burger, A.

10.1101/482687 — cancer biology — Posted on 2018-11-29

234 Both Fallopian Tube and Ovarian Surface Epithelium Can Act as Cell-of-Origin for High Grade Serous Ovarian Carcinoma

Neel, B. G.; Zhang, S.; Zhang, T.; Dolgalev, I.; Ran, H.; Levine, D. A.

10.1101/481200 — cancer biology — Posted on 2018-11-29

235 Speed-detachment tradeoff and its effect on track bound transport of single motor protein

Rizvi, M. S.

10.1101/482604 — biophysics — Posted on 2018-11-29

236 Carbapenem-resistant Pseudomonas aeruginosa bloodstream infection: in vitro synergy, virulence and clinical outcome

Ramos, J. F.; Cristina Leite, G.; Rizek, C. F.; Rossi, F.; Guimaraes, T.; Sanabani, S. S.; Sara Levin, A.; Rocha, V.; Costa, S. F.

10.1101/480236 — microbiology — Posted on 2018-11-29

237 Rapid Whole Cell Imaging Reveals An APPL1-Dynein Nexus That Regulates Stimulated EGFR Trafficking

York, H.; Kaur, A.; Patil, A.; Bhowmik, A.; Moorthi, U. K.; Hyde, G. J.; Gandhi, H.; Gaus, K.; Arumugam, S.

10.1101/481796 — cell biology — Posted on 2018-11-29

238 Conformational dynamics of the HIV Vif protein complex

Ball, K. A.; Chan, L. M.; Stanley, D. J.; Tierney, E.; Thapa, S.; Ta, H. M.; Burton, L. A.; Binning, J. M.; Jacobsen, M.; Gross, J.

10.1101/483099 — biophysics — Posted on 2018-11-29

239 Epigenetics of floral homeotic genes in relation to sexual dimorphism in the dioecious plant Mercurialis annua

Khadka, J.; Yadav, N. S.; Guy, M.; Grafi, G.; Golan-Goldhirsh, A.

10.1101/481481 — plant biology — Posted on 2018-11-29

240 Cell-free DNA Reveals Potential Zoonotic Reservoirs in Non-Human Primates

Kowarsky, M.; De Vlaminck, I.; Okamoto, J.; Neff, N. F.; LeBreton, M.; Nwobegabay, J.; Tamoufe, U.; Ledoux, J. D.; Tafon, B.; Kiyang, J.; Saylors, K.; Wolfe, N. D.; Quake, S. R.

10.1101/481093 — microbiology — Posted on 2018-11-29

241 Habitat-Net: Segmentation of habitat images using deep learning

Abrams, J. F.; Vashishtha, A.; Wong, S. T.; Nguyen, A.; Mohamed, A.; Wieser, S.; Kuijper, A.; Wilting, A.; Mukhopadhyay, A.

10.1101/483222 — ecology — Posted on 2018-11-29

242 Determining targeting specificity of nuclear-encoded organelle proteins with the self-assembling split fluorescent protein toolkit

Sharma, M.; Kretschmer, C.; Lampe, C.; Stuttmann, J.; Klosgen, R. B.

10.1101/480962 — plant biology — Posted on 2018-11-29

243 Vulnerability to climate change for narrowly ranged species: the case of Ecuadorian endemic Magnolia mercedesiarum

Shalisko, V.; Vazquez-Garcia, J. A.; Villalobos-Arambula, A. R.; Muniz-Castro, M. A.

10.1101/482000 — plant biology — Posted on 2018-11-29

244 Transcriptional landscape of soybean (Glycine max) embryonic axes during germination in the presence of paclobutrazol, a gibberellin biosynthesis inhibitor

Gazara, R. K.; de Oliveira, E. A. G.; Oliveira, A. E. A.; Venancio, T. M.

10.1101/480814 — plant biology — Posted on 2018-11-29

245 Evolutionary transition in accessible chromatin landscapes during vertebrate embryogenesis

Uesaka, M.; Kuratani, S.; Takeda, H.; Irie, N.

10.1101/481309 — evolutionary biology — Posted on 2018-11-29

246 E-ChRPs: Engineered Chromatin Remodeling Proteins for Precise Nucleosome Positioning

Donovan, D. A.; Crandall, J. G.; Banks, O. G.; Jensvold, Z. D.; McKnight, L. E.; McKnight, J. N.

10.1101/480913 — genetics — Posted on 2018-11-29

247 Distinct progenitor populations mediate regeneration in the zebrafish lateral line.

Thomas, E. D.; Raible, D.

10.1101/482737 — developmental biology — Posted on 2018-11-29

248 Charting the diversity of Uncultured Viruses of Archaea and Bacteria

Hernandes Coutinho, F.; Rodriguez-Valera, F.

10.1101/480491 — microbiology — Posted on 2018-11-29

249 NucBreak: Location of structural errors in a genome assembly by using paired-end Illumina reads

Khelik, K.; Sandve, G. K.; Nederbragt, A. J.; Rognes, T.

10.1101/393488 — bioinformatics — Posted on 2018-11-29

250 CellFishing.jl: an ultrafast and scalable cell search method for single-cell RNA-sequencing

Sato, K.; Tsuyuzaki, K.; Shimizu, K.; Nikaido, I.

10.1101/374462 — bioinformatics — Posted on 2018-11-29

251 A behavior-manipulating virus relative as a source of adaptive genes for parasitoid wasps

Di Giovanni, D.; Lepetit, D.; Boulesteix, M.; Ravallec, M.; Varaldi, J.

10.1101/342758 — evolutionary biology — Posted on 2018-11-29

252 Development of a New Method for the Highly Effective Identification of Cold Resistance in Living Avocado Varieties

Chunlin, Z.; Fan, W.; Cuiling, L.; WenLi, P.; Shaofeng, Z.; Jingjie, Z.; Hao, J.; Maofu, L.

10.1101/481671 — plant biology — Posted on 2018-11-29

253 A sub-movement time scale of human motor adaptation

Crevecoeur, F.; Thonnard, J.-L.; Lefevre, P.

10.1101/269134 — neuroscience — Posted on 2018-11-29

254 PARbars: cheap, easy to build ceptometers for continuous measurement of light interception in plant canopies

Salter, W. T.; Merchant, A. M.; Gilbert, M. E.; Buckley, T. N.

10.1101/481218 — plant biology — Posted on 2018-11-29

255 High-throughput genotyping of the spelt gene pool reveals patterns of agricultural history in Europe

Abrouk, M.; Stritt, C.; Muller, T.; Keller, B.; Roulin, A. C.; Krattinger, S. G.

10.1101/481424 — plant biology — Posted on 2018-11-29

256 Rethinking mortality rates in men and women: do men age faster?

Lenart, P.; Kuruczova, D.; Joshi, P. K.; Bienertova Vasku, J.

10.1101/179846 — physiology — Posted on 2018-11-29

257 In silico prediction and characterisation of secondary metabolite clusters in the plant pathogenic fungus Verticillium dahliae

Shi, X.; Pedro de Jove, R.; Depotter, J.; Ebert, M.; Seidl, M.; Thomma, B.

10.1101/481648 — microbiology — Posted on 2018-11-29

258 A critical role of the T3SS effector EseJ in intracellular trafficking and replication of Edwardsiella piscicida in non-phagocytic cells

Zhang, L.; Jiang, J.; Tianjian, H.; Zhang, J.; Liu, X.; Yang, D.; Zhang, Y.; Liu, Q.

10.1101/483032 — pathology — Posted on 2018-11-29

259 Prevalence of the fungal pathogen Batrachochytrium dendrobatidis in amphibians of Costa Rica predated first-known epizootic

Vredenburg, V. T.; De Leon, M. E.; Zumbado-Ulate, H.; Garcia-Rodriguez, A.; Alvarado, G.; Sulaeman, H.; Bolanos, F.

10.1101/482968 — ecology — Posted on 2018-11-29

260 Seedling leaves allocate lower fractions of nitrogen to photosynthetic apparatus in nitrogen fixing trees (Dalbergia odorifera and Erythrophleum fordii) than in non-nitrogen fixing trees (Betula alnoides and Castanopsis hystrix) in subtropical China

Tang, J.; Sun, B.; Cheng, R.; Shi, Z.; Luo, D.; Liu, S.; Centritto, M.

10.1101/482984 — ecology — Posted on 2018-11-29

261 GRAM: A generalized model to predict the molecular effect of a non-coding variant in a cell-type specific manner

Lou, S.; Cotter, K. A.; Li, T.; Liang, J.; Mohsen, H.; Liu, J.; Zhang, J.; Cohen, S.; Xu, J.; Yu, H.; Rubin, M.; Gerstein, M.

10.1101/482992 — bioinformatics — Posted on 2018-11-29

262 Non-uniform genetic effect sizes of variants associated with refractive error suggests gene-gene or gene-environment interactions are pervasive

Pozarickij, A.; Williams, C.; Hysi, P.; Guggenheim, J.

10.1101/483008 — genetics — Posted on 2018-11-29

263 Evidence that a major subpopulation of fall armyworm found in the Western Hemisphere is rare or absent in Africa, which may limit the range of crops at risk of infestation.

Nagoshi, R. N.

10.1101/482935 — genetics — Posted on 2018-11-29

264 Factors Associated with Risk Of HIV-Infection Among Pregnant Women in Cameroon: Evidence from the 2016 National Sentinel Surveillance Survey of HIV and syphilis

Anoubissi, J. d. D.; Gabriel, E. L.; Kengne Nde, C.; Fokam, J.; Tseuko, D. G.; Messeh, A.; Moussa, Y.; Nkenfou, C. N.; Bonono, L.; Billong, S.-C.; Nfetam, J.-B. E.

10.1101/482901 — epidemiology — Posted on 2018-11-29

265 Willingness to pay for spectacle among presbyopic population in South Gondar, Ethiopia: A cross-sectional study

Alemu, H. W.

10.1101/482943 — epidemiology — Posted on 2018-11-29

266 Tasks and responsibilities in physical activity promotion of older patients during hospitalization: A nurse perspective

Scheerman, K.; Mesters, J. W.; Borger, J. N.; Meskers, C. G. M.; Maier, A. B.

10.1101/482976 — scientific communication and education — Posted on 2018-11-29

267 Influence of serum lead level on prevalence of musculoskeletal pain, quality of life and cardiopulmonary function among welders in Enugu metropolis, Southeast, Nigeria

Ezema, C. I.; Nwafulume, C.; Nweke, M.; Eneh, O. C.; Uchenwoke, C.; Abugu, J.; Anyachukwu, C. C.

10.1101/482919 — scientific communication and education — Posted on 2018-11-29

268 Inhibition of Klebsiella pneumonia by a Novel Strain of Paenibacillus

Yang, M.; Su, H.; Cheng, X.; Li, X.; Wang, Y.; Lian, H.; Wang, Y.

10.1101/482950 — microbiology — Posted on 2018-11-29

269 Predisposing factors of teenage pregnancy in the Uganda Lake Victoria Island and Mountain districts

Tuyiragize, R.; Nzabona, A.; Asiimwe, J. B.; Kakuba, C.; Mushomi, J.; Maniragaba, F.

10.1101/482927 — scientific communication and education — Posted on 2018-11-29

270 FastqPuri: high-performance preprocessing of RNA-seq data

Perez-Rubio, P.; Lottaz, C.; Engelmann, J. C.

10.1101/480707 — bioinformatics — Posted on 2018-11-29

271 Bacterial diversity and population dynamics during the fermentation of palm wine from Guerrero Mexico

Astudillo-Melgar, F.; Ochoa-Leyva, A.; Utrilla, J.; Huerta-Beristain, G.

10.1101/480038 — microbiology — Posted on 2018-11-29

272 Genetic effect of type 2 Diabetes to the progression of Neurological Diseases

Rahman, M. H.; Peng, S.; Chen, C.; Lio, P.; Moni, M. A.

10.1101/480400 — bioinformatics — Posted on 2018-11-29

273 A multi-site MicroLED Optrode Array for Neural Interfacing

McAlinden, N.; Cheng, Y.; Scharf, R.; Xie, E.; Gu, E.; Dawson, M. D.; Reiche, C.; Sharma, R.; Tathireddy, P.; Rieth, L.; Blair, S.; Mathieson, K.

10.1101/480582 — neuroscience — Posted on 2018-11-29

274 Human Navigation Without and With Vision - the Role of Visual Experience and Visual Regions

Maidenbaum, S.; Chebat, D. R.; Amedi, A.

10.1101/480558 — neuroscience — Posted on 2018-11-29

275 Biosynthetic intermediates of the enterobacterial common antigen overcome outer membrane lipid dyshomeostasis in Escherichia coli

Jiang, X.; Shrivastava, R.; Tan, W. B.; Seow, D. C. S.; Chen, S.; Guan, X. L.; Chng, S.-S.

10.1101/480533 — microbiology — Posted on 2018-11-29

276 Novel Insight into the Aetiology of Autism Spectrum Disorder Gained by Integrating Expression Data with Genome-wide Association Statistics

Pain, O.; Pocklington, A. J.; Holmans, P. A.; Bray, N. J.; O'Brien, H. E.; Hall, L. S.; Pardinas, A. F.; O'Donovan, M. C.; Owen, M. J.; Anney, R.

10.1101/480624 — genomics — Posted on 2018-11-29

277 A Meta-Analysis of Alzheimer’s Disease Brain Transcriptomic Data

Patel, H.; Newhouse, S. J.; Dobson, R. J. B.

10.1101/480459 — genetics — Posted on 2018-11-29

278 A Biomechanical Model of Tumor-induced Intracranial Pressure and Edema in Brain Tissue

Sorribes, I.; Byrne, H.; Moore, M. N.; Jain, H. V.

10.1101/480673 — cancer biology — Posted on 2018-11-29

279 High Throughput Mechanobiological Screens Enable Mechanical Priming of Pluripotency in Mouse Fibroblasts

Lee, J.; Ochoa, M.; Maceda, P.; Yoon, E.; Samarneh, L.; Wong, M.; Baker, A. B.

10.1101/480517 — bioengineering — Posted on 2018-11-29

280 Characterization of the endocrine pancreas in Type 1 Diabetes: islet size is maintained but islet number is markedly reduced

Seiron, P.; Wiberg, A.; Krogvold, L.; Jahnsen, F. L.; Dahl-Jorgensen, K.; Skog, O.; Korsgren, O.

10.1101/480509 — pathology — Posted on 2018-11-29

281 Action intention modulates the representation of object features in early visual cortex

Velji-Ibrahim, J.; Crawford, D. J.; Cattaneo, L.; Monaco, S.

10.1101/480574 — neuroscience — Posted on 2018-11-29

282 The influence of rare variants in circulating metabolic biomarkers

Riveros Mckay Aguilera, F.; Oliver-Williams, C.; Karthikeyan, S.; Walter, K.; Kundu, K.; Ouwehand, W. H.; Roberts, D.; Di Angelantonio, E.; Soranzo, N.; Danesh, J.; INTERVAL Study, ; Wheeler, E.; Zeggini, E.; Butterworth, A.; Barroso, I.

10.1101/480699 — genetics — Posted on 2018-11-29

283 Does the leaf economic spectrum hold within plant functional types? A Bayesian multivariate trait meta-analysis

Shiklomanov, A. N.; Cowdery, E. M.; Bahn, M.; Byun, C.; Jansen, S.; Kramer, K.; Minden, V.; Niinemets, U.; Onoda, Y.; Soudzilovskaia, N. A.; Dietze, M. C.

10.1101/475038 — ecology — Posted on 2018-11-29

284 CoCo: RNA-seq Read Assignment Correction for Nested Genes and Multimapped Reads

Deschamps-Francoeur, G.; Boivin, V.; Abou Elela, S.; Scott, M. S.

10.1101/477869 — bioinformatics — Posted on 2018-11-29

285 Network-based genetic profiling, and therapeutic target identification of Thyroid Cancer

Hossain, M. A.; Asa, T. A.; Quinn, J. M. W.; Rahman, M. M.; Huq, F.; Moni, M. A.

10.1101/480632 — bioinformatics — Posted on 2018-11-29

286 Strategy for Efficient Importing and Function Characterizing of Nicotinamide Adenosine Dinucleotide Analogs in Escherichia coli Cells

Wang, L.; Liu, B.; Liu, Y.; Sun, Y.; Zhang, S.; Yu, D.; Zhao, Z. K.

10.1101/480269 — bioengineering — Posted on 2018-11-29

287 Internal representation of hippocampal neuronal population span a time-distance continuum

Haimerl, C.; Angulo-Garcia, D.; Villette, V.; Reichinnek, S.; Torcini, A.; Cossart, R.; Malvache, A.

10.1101/475095 — neuroscience — Posted on 2018-11-29

288 Streptococcal phosphotransferase system imports unsaturated hyaluronan disaccharide derived from host extracellular matrices

Oiki, S.; Nakamichi, Y.; Maruyama, Y.; Mikami, B.; Murata, K.; Hashimoto, W.

10.1101/480228 — microbiology — Posted on 2018-11-29

289 Quantitative proteomics reveals key roles for post-transcriptional gene regulation in the molecular pathology of FSHD

Jagannathan, S.; Ogata, Y.; Gafken, P.; Tapscott, S. J.; Bradley, R. K.

10.1101/417790 — genomics — Posted on 2018-11-29

290 Assessing metacommunity processes through signatures in spatiotemporal turnover of community composition

Jabot, F.; Laroche, F.; Massol, F.; Arthaud, F.; Crabot, J.; Dubart, M.; Blanchet, S.; Munoz, F.; David, P.; Datry, T.

10.1101/480335 — ecology — Posted on 2018-11-29

291 Additive Dose Response Models: Defining Synergy

Lederer, S.; Dijkstra, T. M. H.; Heskes, T.

10.1101/480608 — pharmacology and toxicology — Posted on 2018-11-29

292 Action perception recruits the cerebellum and is impaired in spinocerebellar ataxia patients

Abdelgabar, A. R.; Suttrup, J.; Broersen, R.; Bhandari, R.; Picard, S.; Keysers, C.; De Zeeuw, C. I.; Gazzola, V.

10.1101/480293 — neuroscience — Posted on 2018-11-29

293 Single-cell lineage tracing by endogenous mutations enriched in transposase accessible mitochondrial DNA

Xu, J.; Nuno, K.; Litzenburger, U. M.; Qi, Y.; Corces, M. R.; Majeti, R.; Chang, H. Y.

10.1101/480202 — genomics — Posted on 2018-11-29

294 Genome-wide interaction study of a proxy for stress-sensitivity and its prediction of major depressive disorder

Arnau-Soler, A.; Adams, M.; Generation Scotland, ; Major Depressive Disorder Working Group of the Psychiatric Genomics Consortium, ; Hayward, C.; Thomson, P.

10.1101/194290 — genetics — Posted on 2018-11-29

295 Beyond a ribosomal RNA methyltransferase, the wider role of MraW in DNA methylation, motility and colonization in Escherichia coli O157:H7

Xu, X.; Zhang, H.; Huang, Y.; Zhang, Y.; Wang, X.; Wang, D.; Pu, J.; Zhao, H.; Lu, X.; Lu, S.; Xiong, Y.; Ye, C.; Dong, Y.; Lan, R.; Xu, J.

10.1101/480244 — microbiology — Posted on 2018-11-29

296 Very rapid flow cytometric assessment of antimicrobial susceptibility during the apparent lag phase of microbial (re)growth

Jindal, S.; Thampy, H.; Day, P. J.; Kell, D. B.

10.1101/480392 — microbiology — Posted on 2018-11-29

297 Collection of Sixteen High-Quality Human Head CAD Models Generated with SimNIBS 2.1 Using Connectome Subject Data within MATLAB(R) Platform

Htet, A. T.; Noetscher, G. M.; Burnham, E. H.; Nummenmaa, A.; Makarov, S. N.

10.1101/480103 — bioengineering — Posted on 2018-11-29

298 Widespread changes in firing rate and functional connectivity across the fronto-parietal network during rule guided working memory

Salazar, R. F.

10.1101/479410 — neuroscience — Posted on 2018-11-29

299 Identifiability in connectome based neural mass models

Xie, X.; Kuceyeski, A.; Shah, S. A.; Schiff, N. D.; Nagarajan, S.; Raj, A.

10.1101/480012 — neuroscience — Posted on 2018-11-29

300 Neural Correlates of Optimal Multisensory Decision Making

Hou, H.; Zheng, Q.; Zhao, Y.; Pouget, A.; GU, Y.

10.1101/480178 — neuroscience — Posted on 2018-11-29

301 Gaussian-distributed codon frequencies of genomes

Khomtchouk, B. B.; Nonner, W.

10.1101/480152 — evolutionary biology — Posted on 2018-11-29

302 Modeling grid fields instead of modeling grid cells

Rosay, S.; Weber, S.; Mulas, M.

10.1101/481747 — neuroscience — Posted on 2018-11-28

303 Uncovering Network Architecture Using an Exact Statistical Input-Output Relation of a Neuron Model

Rashid Shomali, S.; Nili Ahmadabadi, M.; Rasuli, S. N.; Shimazaki, H.

10.1101/479956 — neuroscience — Posted on 2018-11-29

304 Repression of an activity-dependent autocrine insulin signal is required for sensory neuron development in C. elegans.

Bayer Horowitz, L.; Brandt, J. P.; Ringstad, N.

10.1101/481010 — neuroscience — Posted on 2018-11-28

305 Brain network dynamics during spontaneous strategy shifts and incremental task optimization

Allegra, M.; Seyed Allaei, S.; Shuck, N. W.; Amati, D.; Laio, A.; Reverberi, C.

10.1101/481838 — neuroscience — Posted on 2018-11-28

306 A macaque connectome for large-scale network simulations in TheVirtualBrain

Shen, K.; Bezgin, G.; Everling, S.; McIntosh, R.

10.1101/480905 — neuroscience — Posted on 2018-11-28

307 Predictive coding of action intentions in dorsal and ventral visual stream is based on visual anticipations, memory-based information and motor preparation

Monaco, S.; Malfatti, G.; Zendron, A.; Pellencin, E.; Turella, L.

10.1101/480590 — neuroscience — Posted on 2018-11-28

308 Distinctions among electroconvulsion- and proconvulsant-induced seizure discharges and native motor patterns during flight and grooming: Quantitative spike pattern analysis in Drosophila flight muscles

Lee, J.; Iyengar, A.; Wu, C.-F.

10.1101/481234 — neuroscience — Posted on 2018-11-28

309 On the existence of mechanoreceptors within the neurovascular unit of the rodent and rabbit brain

Larriva-Sahd, J. A.; Leon Olea, M.; Vargas-Barroso, V. M.; Varela-Echevarria, A.; Concha Loyola, L.

10.1101/480921 — neuroscience — Posted on 2018-11-28

310 Real-time markerless video tracking of body parts in mice using deep neural networks.

Forys, B.; Xiao, D.; Gupta, P.; Boyd, J. D.; Murphy, T. H.

10.1101/482349 — neuroscience — Posted on 2018-11-28

311 Coherence-based spectro-spatial fillters for stimulus features prediction from electrocorticographic recordings.

Delgado Saa, J. F.; Christen, A.; Martin, S.; Pasley, B. N.; Knight, R. T.; Giraud, A.-L.

10.1101/481572 — neuroscience — Posted on 2018-11-28

312 Transitioning between preparatory and precisely sequenced neuronal activity in production of a skilled behavior

Daliparthi, V. K.; Tachibana, R. O.; Cooper, B. G.; Hahnloser, R.; Kojima, S.; Sober, S. J.; Roberts, T. F.

10.1101/481960 — neuroscience — Posted on 2018-11-28

313 Neural sensitization improves encoding fidelity in the primate retina

Appleby, T. R.; Manookin, M. B.

10.1101/482190 — neuroscience — Posted on 2018-11-28

314 The modular mechanism of chromocenter formation in Drosophila

Jagannathan, M.; Cummings, R.; Yamashita, Y. M.

10.1101/481820 — molecular biology — Posted on 2018-11-28

315 Flexible, fast and selective genetic manipulation of the vertebrate CNS with misPiggy

Slezak, M.; de Vin, F.; Shinmyo, Y.; Batiuk, M. Y.; Rincon, M. Y.; Menacho Pando, C.; Urschitz, J.; Moisyadi, S.; Schnuetgen, F.; Kawasaki, H.; Holt, M. G.

10.1101/481580 — neuroscience — Posted on 2018-11-28

316 GSK3β-SCF-FBXW7 mediated phosphorylation and ubiquitination of IRF1 are required for its transcription-dependent turnover.

Garvin, A. J.; Khalaf, A. H. A.; Rettino, A.; Xicluna, J.; Butler, L.; Morris, J. R.; Heery, D. M.; Clarke, N. M.

10.1101/481911 — molecular biology — Posted on 2018-11-28

317 TET-catalyzed 5-carboxylcytosine promotes CTCF binding to suboptimal sequences genome-wide

Nanan, K.; Sturgill, D.; Prigge, M.; Thenoz, M.; Dillman, A.; Mandler, M.; Oberdoerffer, S.

10.1101/480525 — molecular biology — Posted on 2018-11-28

318 Tumor Protein D54 is a promiscuous Rab effector

Larocque, G.; La-Borde, P. J.; Clarke, N. I.; Royle, S. J.

10.1101/481754 — cell biology — Posted on 2018-11-28

319 The deSUMOylase SENP2 coordinates homologous recombination and non-homologous end joining by independent mechanisms.

Garvin, A. J.; Walker, A. K.; Densham, R. M.; Chauhan, A. S.; Stone, H. R.; MacKay, H. L.; Jamshad, M.; Starowicz, K.; Daza-Martin, M.; Morris, J. R.

10.1101/473991 — cell biology — Posted on 2018-11-28

320 Meta-analyses identify differentially expressed microRNAs in Parkinson’s disease

Schulz, J.; Takousis, P.; Wohlers, I.; Itua, I.; Dobricic, V.; Ruecker, G.; Binder, H.; Middleton, L.; Ioannidis, J.; Perneczky, R.; Bertram, L.; Lill, C.

10.1101/253849 — genetics — Posted on 2018-11-28

321 Molecular requirements for transition from lateral to end-on microtubule binding and dynamic coupling

Chakraborty, M.; Tarasovetc, E.; Zaytsev, A. V.; Godzi, M.; Figueiredo, A. C.; Ataullakhanov, F. I.; Grishchuk, E. L.

10.1101/481713 — cell biology — Posted on 2018-11-28

322 PIN1 isomerisation of BRCA1 promotes replication fork protection.

Daza-Martin, M. R.; Jamshad, M.; Starowicz, K.; Chauhan, A. S.; Beesley, J. F. J.; Coles, J.; Stewart, G. S.; Densham, R. M.; Morris, J. R.

10.1101/478511 — cell biology — Posted on 2018-11-28

323 Accumulation of prelamin A drives inflammation in the heart with implications for treatment of inherited and acquired cardiomyopathies

Brayson, D.; Frustaci, A.; Verardo, R.; Chimenti, C.; Russo, M. A.; Hayward, R.; Ahmad, S. M.; Vizcay-Barrena, G.; Protti, A.; Zammit, P. S.; dos Remedios, C. G.; Ehler, E.; Shah, A. M.; Shanahan, C. M.

10.1101/457044 — pathology — Posted on 2018-11-28

324 Solving the riddle of the evolution of Shine-Dalgarno based translation in chloroplasts

Weiner, I.; Shahar, N.; Marcu, P.; Yacoby, I.; Tuller, T.

10.1101/440842 — plant biology — Posted on 2018-11-28

325 Unraveling intratumoral heterogeneity through high-sensitivity single-cell mutational analysis and parallel RNA-sequencing

Rodriguez-Meira, A.; Buck, G.; Clark, S.-A.; Povinelli, B. J.; Alcolea, V.; Louka, E.; McGowan, S.; Hamblin, A.; Sousos, N.; Barkas, N.; Giustacchini, A.; Psaila, B.; Jacobsen, S. E. W.; Thongjuea, S.; Mead, A. J.

10.1101/474734 — genomics — Posted on 2018-11-28

326 The timing and direction of introgression under the multispecies network coalescent

Hibbins, M. S.; Hahn, M. W.

10.1101/328575 — evolutionary biology — Posted on 2018-11-28

327 q2-sample-classifier: machine-learning tools for microbiome classification and regression

Bokulich, N.; Dillon, M.; Bolyen, E.; Kaehler, B. D.; Huttley, G. A.; Caporaso, J. G.

10.1101/306167 — bioinformatics — Posted on 2018-11-28

328 Population structure, genetic connectivity, and adaptation in the Olympia oyster (Ostrea lurida) along the west coast of North America

Silliman, K.

10.1101/414623 — evolutionary biology — Posted on 2018-11-28

329 The choice of the environmental covariate affects the power to detect variation in reaction norm slopes

Gienapp, P.

10.1101/311217 — evolutionary biology — Posted on 2018-11-28

330 Spatial frequency tuning of perceptual learning and transfer in global motion

Asher, J. M.; Romei, V.; Hibbard, P. B.

10.1101/372458 — neuroscience — Posted on 2018-11-28

331 Temporal dependence of shifts in mu opioid receptor mobility at the cell surface after agonist binding observed by single-particle tracking

Metz, M. J.; Pennock, R. L.; Krapf, D.; Hentges, S. T.

10.1101/402826 — neuroscience — Posted on 2018-11-28

332 Pervasive translation of circular RNAs driven by short IRES-like elements

Fan, X.; Yang, Y.; Wang, Z.

10.1101/473207 — molecular biology — Posted on 2018-11-28

333 Emergence of trait variability through the lens of nitrogen assimilation in Prochlorococcus

Berube, P. M.; Rasmussen, A.; Braakman, R.; Stepanauskas, R.; Chisholm, S. W.

10.1101/383927 — evolutionary biology — Posted on 2018-11-28

334 Suppression of p16 increases nucleotide synthesis via mTORC1

Buj, R.; Chen, C.-W.; Dahl, E. S.; Leon, K. E.; Kuskovsky, R.; Maglakelidze, N.; Navaratnarajah, M.; Zhang, G.; Doan, M. T.; Jiang, H.; Zaleski, M.; Kutzler, L.; Lacko, H.; Lu, Y.; Mills, G. B.; Gowda, R.; Robertson, G. P.; Warrick, J. I.; Herlyn, M.; Imamura, Y.; Kimball, S.; DeGraff, D. J.; Snyder, N. W.; Aird, K. M.

10.1101/393876 — cancer biology — Posted on 2018-11-28

335 Stage specific classification of DEGs via statistical profiling and network analysis reveals potential biomarker associated with various stages of TB

Alam, A.; Imam, N.; Ahmed, M. M.; Tazyeen, S.; Farooqui, A.; Ali, S.; Malik, M. Z.; Ishrat, R.

10.1101/414110 — systems biology — Posted on 2018-11-28

336 The interplay between small RNA pathways shapes chromatin landscapes in C. elegans

Gushchanskaia, E.; Esse, R.; Ma, Q.; Lau, N.; Grishok, A.

10.1101/320713 — molecular biology — Posted on 2018-11-28

337 Long-term surveillance defines spatial and temporal patterns implicating Culex tarsalis as the primary vector of West Nile virus in Iowa, USA

Dunphy, B. M.; Kovach, K. B.; Gehrke, E. J.; Field, E. N.; Rowley, W. A.; Bartholomay, L. C.; Smith, R. C.

10.1101/476234 — epidemiology — Posted on 2018-11-28

338 Cytoneme-mediated signaling essential for tumorigenesis

Fereres, S.; Hatori, R.; Hatori, M.; Kornberg, T. B.

10.1101/446542 — cancer biology — Posted on 2018-11-28

339 Early-life social environment alters juvenile behavior and neuroendocrine function in a highly social cichlid fish

Solomon-Lane, T. K.; Hofmann, H. A.

10.1101/281097 — neuroscience — Posted on 2018-11-28

340 A sub-movement time scale of human motor adaptation

Crevecoeur, F.; Thonnard, J.-L.; Lefevre, P.

10.1101/269134 — neuroscience — Posted on 2018-11-28

341 Replication stress induces mitotic death through parallel pathways regulated by WAPL and telomere deprotection

Masamsetti, V. P.; Mak, K. S.; Low, R. R. J.; Riffikin, C. D.; Lamm, N.; Crabbe, L.; Karlseder, J.; Huang, D. C. S.; Hayashi, M. T.; Cesare, A. J.

10.1101/425264 — molecular biology — Posted on 2018-11-28

342 Biofilm/Persister/Stationary Phase Bacteria Cause More Severe Disease Than Log Phase Bacteria IBiofilm Borrelia burgdorferi Not Only Display More Tolerance to Lyme Antibiotics But Also Cause More Severe Pathology In a Mouse Arthritis Model: Implications for Understanding Persistence, PTLDS and Treatment Failure

Feng, J.; Li, T.; Yuan, Y.; Yee, R.; Zhang, Y.

10.1101/440461 — microbiology — Posted on 2018-11-28

343 Generative adversarial network (GAN) enabled on-chip contact microscopy

Chen, X.; Zhang, H.; Zhu, T.; Yao, Y.; Jin, D.; Fei, P.

10.1101/478982 — biophysics — Posted on 2018-11-28

344 Decoupling sensory from decisional choice biases in perceptual decision making

Linares, D.; Aguilar-Lleyda, D.; Lopez-Moliner, J.

10.1101/062380 — neuroscience — Posted on 2018-11-28

345 Evolution of subgenomic RNA shapes dengue virus adaptation and epidemiological fitness

Finol, E.; Ooi, E. E.

10.1101/267922 — microbiology — Posted on 2018-11-28

346 Vpr drives massive cellular proteome remodelling in HIV-1 infection

Greenwood, E. J.; Williamson, J. C.; Sienkiewicz, A.; Naamati, A.; Matheson, N. J.; Lehner, P. J.

10.1101/364067 — microbiology — Posted on 2018-11-28

347 Optimizing the conservation of migratory species over their full annual cycle

Schuster, R.; Wilson, S.; Rodewald, A.; Arcese, P.; Fink, D.; Auer, T.; Bennett, J.

10.1101/268805 — ecology — Posted on 2018-11-28

348 Prediction Error and Repetition Suppression Have Distinct Effects on Neural Representations of Visual Information

Tang, M. F.; Smout, C. A.; Arabzadeh, E.; Mattingley, J. B.

10.1101/213710 — neuroscience — Posted on 2018-11-28

349 Unprocessed serum glycosylphosphatidylinositol-anchored proteins are correlated to metabolic states

Müller, G. A.; Herling, A. W.; Stemmer, K.; Lechner, A.; Tschöp, M. H.

10.1101/481549 — biochemistry — Posted on 2018-11-28

350 Integrated ligand and structure-based investigation of structural requirements for silent information regulator activation

Gupta, A. K.; Choi, S.

10.1101/481952 — biophysics — Posted on 2018-11-28

351 Repeat expansion and methylation state analysis with nanopore sequencing

Giesselmann, P.; Brändl, B.; Raimondeau, E.; Bowen, R.; Rohrandt, C.; Tandon, R.; Kretzmer, H.; Assum, G.; Galonska, C.; Siebert, R.; Ammerpohl, O.; Heron, A.; Schneider, S. A.; Ladewig, J.; Koch, P.; Schuldt, B. M.; Graham, J. E.; Meissner, A.; Mueller, F.-J.

10.1101/480285 — genetics — Posted on 2018-11-28

352 Helicobacter pylori-induced adrenomedullin modulates IFN-γ-producing T-cell responses and contribute to gastritis

Zhuang, Y.; Kong, H.; Zhang, J.-y.; Mao, F.-y.; Teng, Y.-s.; Lv, Y.-p.; Liu, Y.-g.; Chen, W.; Zhang, Y.; Guo, G.

10.1101/482125 — immunology — Posted on 2018-11-28

353 Selection of trait-specific markers and multi-environment models improve genomic predictive ability in rice

Bhandari, B.; Bartholome, J.; Cao-Hamadoun, T.-V.; Kumari, N.; Frouin, J.; Kumar, A.; Ahmadi, N.

10.1101/482109 — genetics — Posted on 2018-11-28

354 Effect of partial substitution of rice with sorghum and inclusion of hydrolyzable tannins on digestibility and postprandial glycemia in adult dogs

Teixeira, L.; Pinto, C. F. D.; Kessler, A. d. M.; Trevizan, L.; Liege Teixeira, Caroline Fredrich Dourado Pinto, Alexandre de Mello Kessler, Luciano Trevizan,

10.1101/482083 — biochemistry — Posted on 2018-11-28

355 Vernonia Amygdalina Del (Bitter Leaf) extract ameliorates isoniazid (INH) induced liver injury in Swiss Albino Mice

Tilaye, G. A.; Chuffa, K. A.; Zerihun, M. F.; Arayaselassie, M.; Seifu, D.

10.1101/482091 — biochemistry — Posted on 2018-11-28

356 Unexpected Loss of Sensitivity to the nAChR Antagonist Activity of Mecamylamine and DHβEin Nicotine-Tolerant C57BL/6J Mice

McMahon, L.; de Moura, F.

10.1101/482075 — pharmacology and toxicology — Posted on 2018-11-28

357 Massively parallel profiling and predictive modeling of the outcomes of CRISPR/Cas9-mediated double-strand break repair

Chen, W.; McKenna, A.; Schreiber, J.; Yin, Y.; Agarwal, V.; Noble, W. S.; Shendure, J.

10.1101/481069 — genomics — Posted on 2018-11-28

358 Non-Communicable Diseases and their determinants: A Cross-sectional State-Wide STEPS Survey, Haryana, North India

Thakur, J. S.; Jeet, G.; Nangia, R.; Singh, D.; Grover, S.; Lyngdoh, T.; Pal, A.; Verma, R.; Aggarwal, R.; Khan, M. H.; Saran, R.; Jain, S.; Gupta, K.; Kumar, V.

10.1101/482117 — epidemiology — Posted on 2018-11-28

359 Isolation and Identification of Enterovirus D111 in a Child with Acute Flaccid Paralysis in Nigeria.

FALEYE, T. O. C.; Adewumi, M. O. O.; Olayinka, O. T.; Adeniji, J. A.

10.1101/479873 — microbiology — Posted on 2018-11-28

360 Nucleoid size scaling and intracellular organization of translation across bacteria

Gray, W. T.; Govers, S. K.; Xiang, Y.; Parry, B. R.; Campos, M.; Kim, S.; Jacobs-Wagner, C.

10.1101/479840 — microbiology — Posted on 2018-11-28

361 No Significant Effect of Dietary Carbohydrate versus Fat on the Reduction in Total Energy Expenditure During Maintenance of Lost Weight: A Secondary Analysis

Hall, K. D.; Guo, J.

10.1101/476655 — physiology — Posted on 2018-11-28

362 Modelling conduction delays in the corpus callosum using MRI-measured g-ratio

Berman, S.; Filo, S.; Mezer, A. A.

10.1101/479881 — neuroscience — Posted on 2018-11-28

363 Behavioral changes and growth deficits in a CRISPR engineered mouse model of the schizophrenia-associated 3q29 deletion

Rutkowski, T. P.; Purcell, R. H.; Pollak, R. M.; Grewenow, S. M.; Gafford, G. M.; Malone, T.; Khan, U.; Schroeder, J. P.; Epstein, M. P.; Bassell, G. J.; Warren, S. T.; Weinshenker, D.; Caspary, T.; Mulle, J. G.

10.1101/479949 — genetics — Posted on 2018-11-28

364 Limits to a classic paradigm: Most transcription factors regulate genes in multiple biological processes

Ledezma-Tejeida, D.; Altamirano-Pacheco, L.; Fajardo, V.; Collado-Vides, J.

10.1101/479857 — bioinformatics — Posted on 2018-11-28

365 Legionella pneumophila translocated translation inhibitors are required for bacterial-induced host cell cycle arrest

Sol, A.; deJesus-Diaz, D.; Murphy, C.; Devereux, M.; Lipo, E.; Isberg, R. R.

10.1101/479915 — microbiology — Posted on 2018-11-28

366 An F-actin shell ruptures the nuclear envelope by sorting pore-dense and pore-free membranes in meiosis of starfish oocytes

Wesolowska, N.; Machado, P.; Geiss, C.; Kondo, H.; Mori, M.; Schwab, Y.; Lenart, P.

10.1101/480434 — cell biology — Posted on 2018-11-28

367 Non-cell-autonomous promotion of pluripotency induction mediated by YAP

Hartman, A.; Hu, X.; Chen, X.; Eastman, A. E.; Yang, C.; Guo, S.

10.1101/481127 — cell biology — Posted on 2018-11-28

368 High-dimensional mapping of cognition to the brain using voxel-based morphometry and subcortical shape analysis.

Zonneveld, H. I.; Roshchupkin, G.; Adams, H. H. H.; Gutman, B.; van der Lugt, A.; Niessen, W. J.; Vernooij, M.; Ikram, A.

10.1101/479220 — neuroscience — Posted on 2018-11-28

369 Comparative study of population genomic approaches for mapping colony-level traits

Inbar, S.; Cohen, P.; Yahav, T.; Privman, E.

10.1101/479600 — bioinformatics — Posted on 2018-11-28

370 Relationship between Parathyroid Hormone Levels and Hazards of Fracture, Vascular Events and Death in Stage 3 and 4 Chronic Kidney Disease

Geng, S.; Kuang, Z.; Peissig, P.; Page, D.; Maursetter, L.; Hansen, K.

10.1101/480848 — epidemiology — Posted on 2018-11-28

371 Long-term surveillance defines spatial and temporal patterns implicating Culex tarsalis as the primary vector of West Nile virus in Iowa, USA

Dunphy, B. M.; Kovach, K. B.; Gehrke, E. J.; Field, E. N.; Rowley, W. A.; Bartholomay, L. C.; Smith, R. C.

10.1101/476234 — epidemiology — Posted on 2018-11-28

372 Long-Term Effects of a Novel Continuous Remote Care Intervention Including Nutritional Ketosis for the Management of Type 2 Diabetes: A 2-year Non-randomized Clinical Trial.

Athinarayanan, S. J.; Adams, R. N.; Hallberg, S. J.; McKenzie, A. L.; Bhanpuri, N. H.; Campbell, W. W.; Volek, J. S.; Phinney, S. D.; McCarter, J. P.

10.1101/476275 — clinical trials — Posted on 2018-11-28

373 Attention and the motion after effect: New measurements with visual search reveal important individual differences in adaptability.

Morgan, M.; Solomon, J.

10.1101/478941 — neuroscience — Posted on 2018-11-28

374 Decision confidence: EEG correlates of confidence in different phases of a decision task

Krumpe, T.; Gerjets, P.; Rosenstiel, W.; Spueler, M.

10.1101/479204 — neuroscience — Posted on 2018-11-28

375 Syntrophus Conductive Pili Demonstrate that Common Hydrogen-Donating Syntrophs can have a Direct Electron Transfer Option

Walker, D. J.; Nevin, K. P.; Holmes, D. E.; Rotaru, A.-E.; Ward, J. E.; Woodard, T. L.; Zhu, J.; Ueki, T.; Nonnenmann, S. S.; McInerney, M. J.; Lovley, D. R.

10.1101/479683 — microbiology — Posted on 2018-11-28

376 Genomic variation in educational attainment modifies Alzheimer’s disease risk

Raghavan, N.; Vardarajan, B.; Mayeux, R.

10.1101/478776 — genetics — Posted on 2018-11-28

377 AmyCo: the Amyloidoses Collection

Nastou, K. C.; Nasi, G. I.; Tsiolaki, P. L.; Litou, Z. I.; Iconomidou, V. A.

10.1101/479279 — bioinformatics — Posted on 2018-11-28

378 Neural Basis Of The Sound-Symbolic Crossmodal Correspondence Between Auditory Pseudowords And Visual Shapes

McCormick, K.; Lacey, S.; Stilla, R.; Nygaard, L. C.; Sathian, K.

10.1101/478347 — neuroscience — Posted on 2018-11-28

379 Genome-wide by environment interaction studies (GWEIS) of depressive symptoms and psychosocial stress in UK Biobank and Generation Scotland.

Arnau Soler, A.; Macdonald-Dunlop, E.; Adams, M.; Clarke, T.-K.; MacIntyre, D.; Milburn, K.; Navrady, L.; Generation Scotland, ; Major Depressive Disorder Working Group of the Psychiatric Genomics Consortium, ; Hayward, C.; McIntosh, A. M.; Thomson, P.

10.1101/479691 — genetics — Posted on 2018-11-28

380 Development of a precision oncology single molecule molecular inversion probe (smMIP) panel using a community-consensus approach

Barnell, E. K.; Waalkes, A.; Penewit, K.; Campbell, K. M.; Skidmore, Z. L.; Pritchard, C. C.; Fehniger, T. A.; Uppaluri, R.; Govindan, R.; Griffith, M.; Salipante, S. J.; Griffith, O. L.

10.1101/479394 — bioinformatics — Posted on 2018-11-28

381 Participation and Motivations of Grant Peer Reviewers: A Comprehensive Survey of the Biomedical Research Community

Gallo, S. A.; Thompson, L. A.; Schmaling, K. B.; Glisson, S. R.

10.1101/479816 — scientific communication and education — Posted on 2018-11-28

382 Defining developmental diversification of diencephalon neurons through single-cell gene expression profiling

Guo, Q.; Li, J. Y. H.

10.1101/481317 — developmental biology — Posted on 2018-11-28

383 PTPN22 interacts with EB1 to regulate T cell receptor signaling

Zhang, X.; Bai, B.; Wang, T.; Zhao, J.; Zhang, N.; Zhao, Y.; Wang, X.; Wang, B.; Yu, Y.

10.1101/481507 — cell biology — Posted on 2018-11-28

384 Relating evolutionary selection and mutant clonal dynamics in normal epithelia

Hall, M. W. J.; Jones, P. H.; Hall, B. A.

10.1101/480756 — cancer biology — Posted on 2018-11-28

385 The Range of Cooperativity Modulates Actin Binding Protein Cluster Size, Density and Dynamics

Le Goff, T.; Michelot, A.

10.1101/480681 — biophysics — Posted on 2018-11-28

386 Millimetre wave radiation activates leech nociceptors via TRPV1-like receptor sensitisation

Romanenko, S.; Harvey, A. R.; Hool, L.; Fan, S.; Begley, R.; Wallace, V. P.

10.1101/480665 — biophysics — Posted on 2018-11-28

387 DYT1 dystonia patient-derived fibroblasts have increased deformability and susceptibility to damage by mechanical forces.

Gill, N. K.; Ly, C.; Kim, P. H.; Saunders, C. A.; Fong, L. G.; Young, S. G.; Luxton, G. G.; Rowat, A. C.

10.1101/480186 — biophysics — Posted on 2018-11-28

388 Functional role of pax6 in eye and central nervous system development in the annelid Capitella teleta

Klann, M.; Seaver, E. C.

10.1101/481135 — developmental biology — Posted on 2018-11-28

389 Notch-Mediated Polarity Decisions in Mechanosensory Hair Cells

Jacobo, A.; Dasgupta, A.; Erzberger, A.; Siletti, K.; Hudspeth, A. J.

10.1101/480798 — developmental biology — Posted on 2018-11-28

390 The protein architecture of the endocytic coat analyzed by FRET

Skruzny, M.; Pohl, E.; Gnoth, S.; Malengo, G.; Sourjik, V.

10.1101/480996 — cell biology — Posted on 2018-11-28

391 Human sperm chromatin forms spatially restricted nucleosome domains consistent with programmed nucleosome positioning

Huang, W.-H.; Zhang, M.-Z.; Cao, X.-M.; Xu, F.-Q.; Liang, X.-W.; Fu, L.-L.; Sun, F.-Z.; Huang, X.-Y.

10.1101/481028 — cell biology — Posted on 2018-11-28

392 Topological Data Analysis of PAM50 and 21-Gene Breast Cancer Assays

Mathews, J.; Nadeem, S.; Pouryahya, M.; Tannenbaum, A.; Deasy, J. O.

10.1101/480723 — cancer biology — Posted on 2018-11-28

393 Structural basis for ion selectivity in TMEM175 K+ channels

Brunner, J. D.; Jakob, R. P.; Schulze, T.; Neldner, Y.; Moroni, A.; Thiel, G.; Maier, T.; Schenck, S.

10.1101/480863 — biochemistry — Posted on 2018-11-28

394 A protein phosphorylation module patterns the Bacillus subtilis spore outer coat

Freitas, C.; Plannic, J.; Isticato, R.; Pelosi, A.; Zilhao, R.; Serrano, M.; Baccigalupi, L.; Ricca, E.; Elsholz, A. K.; Losick, R.; Henriques, A. O.

10.1101/469122 — microbiology — Posted on 2018-11-28

395 Intracellular pH controls Wnt signaling downstream of glycolysis in the vertebrate embryo

oginuma, M.; harima, y.; Xiong, F.; Pourquie, O.

10.1101/481259 — developmental biology — Posted on 2018-11-28

396 Cold Inducible RNA-binding protein (CIRBP) adjusts clock gene expression and REM sleep recovery after sleep deprivation

Hoekstra, M. M. B.; Emmenegger, Y.; Franken, P.

10.1101/476911 — neuroscience — Posted on 2018-11-27

397 Resource misallocation as a mediator of fitness costs in antibiotic resistance.

Trauner, A.; Banaei-Esfahani, A.; Gygli, S. M.; Warmer, P.; Feldmann, J.; Shafieechashmi, S.; Eschbach, K.; Zampieri, M.; Borrell, S.; Collins, B. C.; Beisel, C.; Aebersold, R.; Gagneux, S.

10.1101/456434 — microbiology — Posted on 2018-11-27

398 Spatial and Temporal Cortical Variability Track with Age and Affective Experience During Emotion Regulation in Youth

Guassi Moreira, J. F.; McLaughlin, K. A.; Silvers, J. A.

10.1101/291245 — neuroscience — Posted on 2018-11-27

399 Predominance of cis-regulatory changes in parallel expression divergence of sticklebacks.

Verta, J.-P.; Jones, F.

10.1101/412932 — evolutionary biology — Posted on 2018-11-27

400 Suppression of p16 increases nucleotide synthesis via mTORC1

10.1101/393876 — cancer biology — Posted on 2018-11-27

401 Deep Learning for High-Throughput Quantification of Oligodendrocyte Ensheathment at Single-Cell Resolution

Xu, Y. K. T.; Chitsaz, D.; Brown, R. A.; Cui, Q. L.; Dabarno, M. A.; Antel, J. P.; Kennedy, T. E.

10.1101/389932 — neuroscience — Posted on 2018-11-27

402 A revised biosynthetic pathway for the cofactor F420 in bacteria

Bashiri, G.; Antoney, J. P.; Jirgis, E. N. M.; Shah, M. V.; Ney, B.; Copp, J.; Stutely, S. M.; Sreebhavan, S.; Palmer, B.; Middleditch, M.; Tokuriki, N.; Greening, C.; Baker, E. N.; Scott, C.; Jackson, C. J.

10.1101/470336 — molecular biology — Posted on 2018-11-27

403 Cannabichromene is a cannabinoid CB2 receptor agonist

Udoh, M. P.; Santiago, M. J.; Devenish, S.; McGregor, I. S.; Connor, M.

10.1101/435057 — pharmacology and toxicology — Posted on 2018-11-27

404 TMS-evoked EEG potentials from prefrontal and parietal cortex: reliability, site specificity, and effects of NMDA receptor blockade

Rogasch, N.; Zipser, C.; Darmani, G.; Mutanen, T. P.; Biabani, M.; Zrenner, C.; Desideri, D.; Belardinelli, P.; Müller-Dahlhaus, F.; Ziemann, U.

10.1101/480111 — neuroscience — Posted on 2018-11-27

405 Using eDNA methodologies to identify thepresence/absence of S. thermophilus in yogurtproducts

Bejdo, V.; Gao, C.

10.1101/414060 — genomics — Posted on 2018-11-27

406 Antiretroviral therapy is the principal cause of tuberculosis decline in southern and eastern Africa

Dye, C.; Williams, B. G.

10.1101/477158 — epidemiology — Posted on 2018-11-27

407 Genetic dissection of a Leishmania flagellar proteome demonstrates requirement for directional motility in sand fly infections

Beneke, T.; Demay, F.; Hookway, E.; Ashman, N.; Jeffery, H.; Smith, J.; Valli, J.; Becvar, T.; Myskova, J.; Lestinova, T.; Shafiq, S.; Sadlova, J.; Volf, P.; Wheeler, R. J.; Gluenz, E.

10.1101/476994 — cell biology — Posted on 2018-11-27

408 Phosphoproteomics of Arabidopsis Highly ABA-Induced1 identifies AT-Hook Like10 phosphorylation required for stress growth regulation

Wong, M. M.; Bhaskara, G. B.; Wen, T.-N.; Lin, W.-D.; Nguyen, T. T.; Chong, G. L.; Verslues, P.

10.1101/413013 — plant biology — Posted on 2018-11-27

409 The human secretome - the proteins secreted from human cells

Uhlen, M.; Tegel, H.; Sivertsson, A.; Kuo, C.-C.; Gutierrez, J. M.; Lewis, N. E.; Forsström, B.; Dannemeyer, M.; Fagerberg, L.; Malm, M.; Vunk, H.; Edfors, F.; Hober, A.; Sjöstedt, E.; Kotol, D.; Mulder, J.; Mardinoglu, A.; Schwenk, J. M.; Nilsson, P.; Zwahlen, M.; Ottosson Takanen, J.; von Feilitzen, K.; Stadler, C.; Lindskog, C.; Ponten, F.; Nielsen, J.; Palsson, B. O.; Volk, A.-L.; Lundqvist, M.; Berling, A.; Svensson, A.-S.; Kanje, S.; Enstedt, H.; Afshari, D.; Ekblad, S.; Scheffel, J.; Katona, B.; Vuu, J.; Lindström, E.; Xu, L.; Mihai, R.; Bremer, L.; Westin, M.; Muse, M.; Mayr, L. M.;

10.1101/465815 — molecular biology — Posted on 2018-11-27

410 Rapid, seamless generation of recombinant poxviruses using host-range and visual selection

Vipat, S.; Brennan, G.; Haller, S. L.; Rothenburg, S.

10.1101/467514 — microbiology — Posted on 2018-11-27

411 Inherited defects in natural killer cells shape tumor immune microenvironment, clinical outcome and immunotherapy response

Xu, X.; Li, J.; Zou, J.; Feng, X.; Zhang, C.; Zheng, R.; Duanmu, W.; Saha-Mandal, A.; Ming, Z.; Wang, E.

10.1101/471912 — cancer biology — Posted on 2018-11-27

412 Human pointing errors suggest a flattened, task-dependent representation of space

Vuong, J.; Fitzgibbon, A.; Glennerster, A.

10.1101/390088 — neuroscience — Posted on 2018-11-27

413 Different neural networks for conceptual retrieval in sighted and blind reveal the experiential bases of knowledge.

BOTTINI, R.; Ferraro, S.; Nigri, A.; Cuccarini, V.; Bruzzone, M. G.; Collignon, O.

10.1101/384552 — neuroscience — Posted on 2018-11-27

414 Identifying Changes in RNA Editome Unique to Major Depressive Disorder

Hasan, S.; Robbani, S. M.; Afroze, T.; Ahsan, G. U.; Hossain, M. M.

10.1101/419309 — genomics — Posted on 2018-11-27

415 Protein-level assembly increases protein sequence recovery from metagenomic samples manyfold

Steinegger, M.; Mirdita, M.; Soding, J.

10.1101/386110 — bioinformatics — Posted on 2018-11-27

416 Bivariate causal mixture model quantifies polygenic overlap between complex traits beyond genetic correlation

Frei, O.; Holland, D.; Smeland, O. B.; Shadrin, A. A.; Fan, C. C.; Maeland, S.; O'Connell, K. S.; Wang, Y.; Djurovic, S.; Thompson, W. K.; Andreassen, O. A.; Dale, A. M.

10.1101/240275 — genetics — Posted on 2018-11-27

417 The Unreasonable Effectiveness of Convolutional Neural Networks in Population Genetic Inference

Flagel, L.; Brandvain, Y. J.; Schrider, D. R.

10.1101/336073 — evolutionary biology — Posted on 2018-11-27

418 Background mutability shapes observed mutational spectrum in cancer and improves driver mutation prediction

Li, M.; Brown, A.-L.; Goncearenco, A.; Panchenko, A. R.

10.1101/354506 — cancer biology — Posted on 2018-11-27

419 Massive single-cell RNA-seq analysis and imputation via deep learning

Deng, Y.; Bao, F.; Dai, Q.; Wu, L.; Altschuler, S.

10.1101/315556 — bioinformatics — Posted on 2018-11-27

420 Orienting to Polarized Light at Night-Matching Lunar Skylight to Performance in a Nocturnal Beetle

Foster, J. J.; Kirwan, J. D.; el Jundi, B.; Smolka, J.; Khaldy, L.; Baird, E. J.; Byrne, M.; Nilsson, D.-E.; Johnsen, S.; Dacke, M.

10.1101/366583 — animal behavior and cognition — Posted on 2018-11-27

421 Ancient exapted transposable elements promote nuclear enrichment of long noncoding RNAs

Carlevaro-Fita, J.; Das, M.; Polidori, T.; Navarro, C.; Zoller, T. I.; Johnson, R.

10.1101/189753 — genomics — Posted on 2018-11-27

422 Mismatch repair impedes meiotic crossover interference

Cooper, T. J.; Crawford, M. R.; Hunt, L. J.; Marsolier-Kergoat, M.-C.; Llorente, B.; Neale, M. J.

10.1101/480418 — genetics — Posted on 2018-11-27

423 Link Prediction through Deep Learning

Wang, X.-W.; Chen, Y.; Liu, Y.-Y.

10.1101/247577 — bioinformatics — Posted on 2018-11-27

424 Altered composition of the γδ T cell pool in lymph nodes during ageing enhances tumour growth

Chen, H.-C.; Eling, N.; Martinez-Jimenez, C. P.; O'Brien, L. M.; Marioni, J. C.; Odom, D. T.; de la Roche, M.

10.1101/480327 — immunology — Posted on 2018-11-27

425 First estimation of the scale of canonical 5’ splice site GT>GC mutations generating wild-type transcripts and their medical genetic implications

Lin, J.-H.; Tang, X.-Y.; Boulling, A.; Zou, W.-B.; Masson, E.; Fichou, Y.; Raud, L.; Le Tertre, M.; Deng, S.-J.; Berlivet, I.; Ka, C.; Mort, M.; Hayden, M.; Le Gac, G.; Cooper, D. N.; Li, Z.-S.; Ferec, C.; Liao, Z.; Chen, J.-M.

10.1101/479493 — genetics — Posted on 2018-11-27

426 A theory for how the antigen presentation profile influences the timing of T-cell detection

Carignano, A.; Dalchau, N.

10.1101/480301 — immunology — Posted on 2018-11-27

427 Universal architectural concepts underlyingprotein folding patterns

Lesk, A.; Subramanian, R.; Allison, L.; Abramson, D.; Stuckey, P.; Garcia de la Banda, M.; Konagurthu, A.

10.1101/480194 — bioinformatics — Posted on 2018-11-27

428 Cross-reactivity reduced dengue virus serotype 2 vaccine does not confer cross-protection against other serotypes of dengue viruses

Galula, J. U.; Yang, C.-Y.; Davis, B. S.; Chang, G.-J. J.; Chao, D.-Y.

10.1101/480210 — immunology — Posted on 2018-11-27

429 Use of Hyperspectral Reflectance-Derived Relationship Matrices for Genomic Prediction of Grain Yield in Wheat

Krause, M. R.; Gonzalez Perez, L.; Crossa, J.; Perez-Rodriguez, P.; Montesinos-Lopez, O. A.; Singh, R.; Dreisigacker, S.; Poland, J.; Rutkoski, J.; Sorrells, M. E.; Gore, M. A.; Mondal, S.

10.1101/389825 — genomics — Posted on 2018-11-27

430 Mismatch repair impedes meiotic crossover interference

Cooper, T. J.; Crawford, M. R.; Hunt, L. J.; Marsolier-Kergoat, M.-C.; Llorente, B.; Neale, M. J.

10.1101/480418 — genetics — Posted on 2018-11-27

431 Colistin requires de novo lipopolysaccharide biosynthesis for activity

Sabnis, A.; Klockner, A.; Becce, M.; Evans, L. E.; Stevens, M. M.; Edwards, A. M.

10.1101/479618 — microbiology — Posted on 2018-11-27

432 Biofilm-associated Mycobacterium abscessus cells have altered antibiotic tolerance and surface glycolipids in Artificial Cystic Fibrosis Sputum Media

Hunt, A. C.; Boll, J.; Boutte, C.

10.1101/479923 — microbiology — Posted on 2018-11-27

433 Islet macrophages are the primary islet source of IGF-1 and improve glucose homeostasis following pancreatic beta-cell death.

Nackiewicz, D.; Dan, M.; Speck, M.; Chow, S.; Pospisilik, J. A.; Verchere, B.; Ehses, J.

10.1101/480368 — immunology — Posted on 2018-11-27

434 Two Nimrod receptors, NimC1 and Eater, synergistically contribute to bacterial phagocytosis in Drosophila melanogaster

Melcarne, C.; Ramond, E.; Dudzic, J.; Bretscher, A.; Kurucz, E.; Ando, I.; Lemaitre, B.

10.1101/479550 — immunology — Posted on 2018-11-27

435 Deciphering the Regulatory Landscape of γδ T Cell Development by Single-Cell RNA-Sequencing

Sagar, ; Pokrovskii, M.; Herman, J. S.; Naik, S.; Sock, E.; Lausch, U.; Wegner, M.; Tanriver, Y.; Littman, D. R.; Grün, D.

10.1101/478529 — immunology — Posted on 2018-11-27

436 The devil is in the detail: The role of threat level and intolerance of uncertainty in extinction

Morriss, J.; Saldarini, F.; van Reekum, C. M.

10.1101/479543 — neuroscience — Posted on 2018-11-27

437 FAM83D directs protein kinase CK1α to the mitotic spindle for proper spindle positioning

Fulcher, L. J.; He, Z.; Mei, L.; Macartney, T.; Wood, N.; Prescott, A. R.; Whigham, A.; Varghese, J.; Gourlay, R.; Ball, G.; Clarke, R. G.; Campbell, D. G.; Maxwell, C. A.; Sapkota, G. P.

10.1101/480616 — cell biology — Posted on 2018-11-27

438 High-Throughput, Lysis-free Screening for sulfatase Activity Using Escherichia coli Autodisplay in Microdroplets

van Loo, B.; Heberlein, M.; Mair, P.; Zinchenko, A.; Schuurmann, J.; Eenink, B. D. G.; Dilkaute, C.; Jose, J.; Hollfelder, F.; Bornberg-Bauer, E.

10.1101/479162 — bioengineering — Posted on 2018-11-27

439 Induction of Interferon-Stimulated Genes and Cellular Stress Pathways by Morpholinos

Lai, J. K. H.; Gagalova, K.; Stainier, D. Y. R.

10.1101/479188 — genetics — Posted on 2018-11-27

440 Capturing sleep-wake cycles by using day-to-day smartphone touchscreen interactions

Borger, J. N.; Huber, R.; Ghosh, A.

10.1101/479014 — animal behavior and cognition — Posted on 2018-11-27

441 Speech Synthesis from ECoG using Densely Connected 3D Convolutional Neural Networks

Angrick, M.; Herff, C.; Mugler, E.; Tate, M. C.; Slutzky, M. W.; Krusienski, D. J.; Schultz, T.

10.1101/478644 — neuroscience — Posted on 2018-11-27

442 OPTIMIR, a novel algorithm for integrating available genome-wide genotype data into miRNA sequence alignment analysis.

Thibord, F.; Perret, C.; Roux, M.; Suchon, P.; Germain, M.; Deleuze, J.-F.; Morange, P.-E.; Tregouet, D.-A.

10.1101/479097 — bioinformatics — Posted on 2018-11-27

443 Apical progenitors remain multipotent throughout corticalneurogenesis

Oberst, P.; Fievre, S.; Baumann, N.; Concetti, C.; Jabaudon, D.

10.1101/478891 — neuroscience — Posted on 2018-11-27

444 The pentaglycine bridges of Staphylococcus aureus peptidoglycan are essential for cell integrity

Monteiro, J. M.; Munch, D.; Filipe, S. R.; Schneider, T.; Sahl, H.-G.; Pinho, M. G.

10.1101/479006 — microbiology — Posted on 2018-11-27

445 Swift Large-scale Examination of Directed Genome Editing (SLEDGE Hammer)

Hammouda, O. T.; Thumberger, T.; Wittbrodt, J.

10.1101/479261 — molecular biology — Posted on 2018-11-27

446 Adaptive radiation of barbs of the genus Labeobarbus (Cyprinidae) in the East African river

Levin, B.; Casal-Lopez, M.; Simonov, E.; Dgebuadze, Y.; Mugue, N.; Tiunov, A.; Doadrio, I.; Golubtsov, A.

10.1101/478990 — evolutionary biology — Posted on 2018-11-27

447 The extracellular association of the bacterium \"Candidatus Deianiraea vastatrix\" with the ciliate Paramecium suggests an alternative scenario for the evolution of Rickettsiales

Castelli, M.; Sabaneyeva, E.; Lanzoni, O.; Lebedeva, N.; Floriano, A. M.; Gaiarsa, S.; Benken, K.; Modeo, L.; Bandi, C.; Potekhin, A.; Sassera, D.; Petroni, G.

10.1101/479196 — evolutionary biology — Posted on 2018-11-27

448 Nuclear arms races: experimental evolution for mating success in the mushroom-forming fungus Schizophyllum commune

Nieuwenhuis, B. P.; Aanen, D. K.

10.1101/479147 — evolutionary biology — Posted on 2018-11-27

449 Towards the new normal: Transcriptomic and genomic changes in the two subgenomes of a 100,000 years old allopolyploid, Capsella bursa-pastoris

Kryvokhyzha, D.; Milesi, P.; Duan, T.; Orsucci, M.; Wright, S. I.; Glemin, S.; Lascoux, M.

10.1101/479048 — evolutionary biology — Posted on 2018-11-27

450 Choice of assembly software has a critical impact on virome characterisation

Sutton, T. D. S.; Clooney, A. G.; Ryan, F. J.; Ross, R. P.; Hill, C.

10.1101/479105 — bioinformatics — Posted on 2018-11-27

451 Systematic discovery of endogenous human ribonucleoprotein complexes

Mallam, A. L.; Sae-Lee, W.; Schaub, J. M.; Tu, F.; Battenhouse, A.; Jang, Y. J.; Kim, J.; Finkelstein, I. J.; Marcotte, E. M.; Drew, K.

10.1101/480061 — systems biology — Posted on 2018-11-27

452 Network dynamics of Broca’s area during word selection

Conner, C. R.; Kadipasaoglu, C.; Shouval, H.; Hickock, G.; Tandon, N.

10.1101/478461 — neuroscience — Posted on 2018-11-27

453 Endogenous oxytocin release in periaqueductal gray eases inflammatory pain through long term suppression of pain perception neurons in the spinal cord

Iwasaki, M.; Charlet, A.

10.1101/480319 — neuroscience — Posted on 2018-11-27

454 PDGFRα signaling in cardiac fibroblasts modulates quiescence, metabolism and self-renewal, and promotes anatomical and functional repair

Asili, N. S.; Xaymardan, M.; Forte, E.; Waardenberg, A. J.; Cornwell, J.; Janbandhu, V.; Kesteven, S.; Chandrakanthan, V.; Malinowska, H.; Reinhard, H.; Yang, S. F.; Pickett, H. A.; Schofield, P.; Christ, D.; Ahmed, I.; Chong, J.; Heffernan, C.; Li, J.; Simonian, M.; Bouveret, R.; Srivastava, S.; Mishra, R. K.; Dhawan, J.; Nordon, R.; Macdonald, P.; Graham, R. M.; Feneley, M.; Harvey, R. P.

10.1101/225979 — cell biology — Posted on 2018-11-27

455 Learning probabilistic representations with randomly connected neural circuits

Maoz, O.; Esteki, M. S.; Tkacik, G.; Kiani, R.; Schneidman, E.

10.1101/478545 — neuroscience — Posted on 2018-11-27

456 Dissecting the heterogeneous cortical anatomy of autism spectrum disorder using normative models

Zabihi, M.; Oldehinkel, M.; Wolfers, T.; Frouin, V.; Goyard, D.; Loth, E.; Charman, T.; Tilmann, J.; Banaschewski, T.; Dumas, G.; Holt, R.; Baron-Cohen, S.; Durston, S.; Bolte, S.; Murphy, D.; Ecker, C.; Buitelaar, J. K.; Beckmann, C. F.; Marquand, A. F.

10.1101/477596 — neuroscience — Posted on 2018-11-27

457 Empirical estimation of permutation-based metabolome-wide significance thresholds

Peluso, A.; Ebbels, T. M. D.; Glen, R.

10.1101/478370 — bioinformatics — Posted on 2018-11-27

458 Quantitative Estimation of Long-Range Interactions at the Nanoscale

Sood, V.; Dhar, S.; Katti, D. S.

10.1101/478800 — bioengineering — Posted on 2018-11-27

459 Acute and chronic stage adaptations of vascular architecture and cerebral blood flow in a mouse model of TBI

Steinman, J.; Cahill, L. S.; Koletar, M. M.; Stefanovic, B.; Sled, J. G.

10.1101/479626 — neuroscience — Posted on 2018-11-27

460 Neuronal activity drives homeostatic sleep through engagement of the hypothalamic neuropeptide galanin

Reichert, S.; Pavon Arocas, O.; Rihel, J.

10.1101/479634 — neuroscience — Posted on 2018-11-27

461 Individual Behavioral and Physiological Responses During Different Experimental Situations - Consistency over Time and Effects of Context

Safryghin, A.; Hebesberger, D. V.; Wascher, C. A. F.

10.1101/477638 — animal behavior and cognition — Posted on 2018-11-27

462 Glycolytic inhibitor 2-deoxyglucose prevents cortical hyperexcitability after traumatic brain injury

Koenig, J. B.; Cantu, D.; Low, C.; Noubary, F.; Croker, D.; Whalen, M.; Kong, D.; Dulla, C. G.

10.1101/479782 — neuroscience — Posted on 2018-11-27

463 TMS-evoked EEG potentials from prefrontal and parietal cortex: reliability, site specificity, and effects of dextromethorphan

Rogasch, N.; Zipser, C.; Darmani, G.; Mutanen, T. P.; Biabani, M.; Zrenner, C.; Desideri, D.; Belardinelli, P.; Müller-Dahlhaus, F.; Ziemann, U.

10.1101/480111 — neuroscience — Posted on 2018-11-27

464 Dispersal increases the resilience of tropical savanna and forest distributions

Goel, N.; Guttal, V.; Levin, S.; Staver, C.

10.1101/476184 — ecology — Posted on 2018-11-27

465 Beware the Jaccard: the choice of metric is important and non-trivial in genomic colocalisation analysis.

Salvatore, S.; Rand, K. D.; Grytten, I.; Ferkingstad, E.; Domanska, D. E.; Holden, L.; Gheorghe, M.; Mathelier, A.; Glad, I.; Sandve, G. K.

10.1101/479253 — bioinformatics — Posted on 2018-11-27

466 Dynamic brain interactions during picture naming

Giahi Saravani, A.; Forseth, K. J.; Tandon, N.; Pitkow, X.

10.1101/478495 — neuroscience — Posted on 2018-11-27

467 Deciphering the Regulatory Landscape of γδ T Cell Development by Single-Cell RNA-Sequencing

Sagar, S.; Pokrovskii, M.; Herman, J. S.; Naik, S.; Sock, E.; Lausch, U.; Wegner, M.; Tanriver, Y.; Littman, D. R.; Grün, D.

10.1101/478529 — immunology — Posted on 2018-11-27

468 Climate or disturbance: temperate forest structural change and carbon sink potential

Andrews, T.; Dietze, M.; Booth, R.

10.1101/478693 — ecology — Posted on 2018-11-27

469 Scalable Label Propagation Algorithms for Heterogeneous Networks

Farhangi Maleki, E.; Ghadiri, N.; Lotfi Shahreza, M.; Maleki, Z.

10.1101/477463 — bioinformatics — Posted on 2018-11-27

470 Microfluidic On-demand Engineering of Exosomes towards Cancer Immunotherapy

Zhao, Z.; McGill, J.; He, M.

10.1101/478875 — bioengineering — Posted on 2018-11-27

471 Combining predictive coding with neural oscillations optimizes on-line speech processing

Hovsepyan, S.; Olasagasti, I.; Giraud, A.-L.

10.1101/477588 — neuroscience — Posted on 2018-11-27

472 Effects of post-training novelty exposure on contextual fear memory: An attempt to translate behavioral tagging to humans

McClay, M.; Dunsmoor, J. E.

10.1101/479659 — neuroscience — Posted on 2018-11-27

473 Convolutional Sparse Coded Dynamic Brain Functional Connectivity

Yan, J.; zhu, y.

10.1101/476663 — bioinformatics — Posted on 2018-11-27

474 Age-associated different transcriptome profiling in zebrafish and rat: insight into diversity of vertebrate aging

Kijima, Y.; Wantong, W.; Igarashi, Y.; Yoshitake, K.; Asakawa, S.; Suzuki, Y.; Watabe, S.; Kinoshita, S.

10.1101/478438 — bioinformatics — Posted on 2018-11-27

475 DrugCombDB: a comprehensive database of drug combinations toward network medicine and combination therapy

Deng, L.; Zou, B.; Zhang, W.; Liu, H.

10.1101/477547 — bioinformatics — Posted on 2018-11-27

476 Females facilitate male patch discovery in a wild fish population

Snijders, L.; Kurvers, R. H. J. M.; Krause, S.; Tump, A. N.; Ramnarine, I. W.; Krause, J.

10.1101/478537 — animal behavior and cognition — Posted on 2018-11-27

477 Cell-specific CRISPR/Cas9 activation by microRNA-dependent expression of anti-CRISPR proteins

Hoffmann, M. D.; Aschenbrenner, S.; Grosse, S.; Rapti, K.; Domenger, C.; Fakhiri, J.; Mastel, M.; Eils, R.; Grimm, D.; Niopek, D.

10.1101/480384 — synthetic biology — Posted on 2018-11-27

478 Visual field advantage: Redefined by training?

Stone, S. A.; Baker, J.; Olsen, R.; Gibb, R.; Doan, J.; Hoetmer, J.; Gonzalez, C. L. R.

10.1101/476614 — neuroscience — Posted on 2018-11-27

479 Quantitative PCR provides a simple and accessible method for quantitative microbiome profiling

Jian, C.; Luukkonen, P.; Yki-Jarvinen, H.; Salonen, A.; Korpela, K.

10.1101/478685 — microbiology — Posted on 2018-11-27

480 Gut microbiota features of the geographically diverse Indian population

Shetty, S.

10.1101/478586 — microbiology — Posted on 2018-11-27

481 From copy number alterations to structural variants: the evolutionary cascade of papillary renal cell carcinomas

Zhu, B.; Poeta, M. L.; Costantini, M.; Zhang, T.; Shi, J.; Sentinelli, S.; Pompeo, V.; Cardelli, M.; Alexandrov, B.; Otlu, B.; Hua, X.; Jones, K.; Brodie, S.; Toro, J. R.; Yeager, M.; Wang, M.; Hicks, B.; Alexandrov, L.; Brown, K. M.; Chanock, S.; Fazio, V. M.; Gallucci, M.; Landi, M. T.

10.1101/478156 — genomics — Posted on 2018-11-27

482 Selection at behavioral, developmental and metabolic genes is associated with the northward expansion of a successful tropical colonizer

Bourgeois, Y.; Boissinot, S.

10.1101/478214 — evolutionary biology — Posted on 2018-11-27

483 The evolutionary advantage of condition-dependent recombination in a Red Queen model with diploid antagonists

Rybnikov, S. R.; Frenkel, Z. M.; Fahima, T.; Korol, A. B.

10.1101/478966 — evolutionary biology — Posted on 2018-11-27

484 Extreme robustness requires extreme phenotypes

Rocha, F.; Klaczko, L. B.

10.1101/478784 — evolutionary biology — Posted on 2018-11-27

485 Temporal shifts in intraspecific and interspecific diet variation: effects of predator body size and identity across seasons in a stream community

Falke, L. P.; Henderson, J. S.; Novak, M.; Preston, D. L.

10.1101/476374 — ecology — Posted on 2018-11-27

486 Production of very-high-amylose cassava by post-transcriptional silencing of branching enzyme genes

Zhou, W.; Zhao, S.; He, S.; Ma, Q.; Lu, X.; Hao, X.; Wang, H.; Yang, J.; Zhang, P.

10.1101/477414 — bioengineering — Posted on 2018-11-27

487 Dynamical Task Switching in Cellular Computers

Goni-Moreno, A.; de la Cruz, F.; Rodriguez-Paton, A.; Amos, M.

10.1101/479998 — synthetic biology — Posted on 2018-11-27

488 Women in neotropical science: Gender parity in the 21st century and prospects for a post-war Colombia

Lopez Aguirre, C.

10.1101/477422 — scientific communication and education — Posted on 2018-11-27

489 Extraordinary Fast-Twitch Fiber Abundance In Elite Weightlifters

Serrano, N.; Colenso-Semple, L. M.; Lazauskas, K. K.; Siu, J. W.; Bagley, J. R.; Lockie, R. G.; Costa, P. B.; Galpin, A. J.

10.1101/468744 — physiology — Posted on 2018-11-27

490 Frontal and parietal alpha oscillations reflect attentional modulation of cross-modal matching

Misselhorn, J.; Friese, U.; Engel, A. K.

10.1101/477034 — neuroscience — Posted on 2018-11-27

491 Agreement between 18F-Florbetapir PET imaging and cerebrospinal fluid Aβ1-42, Aβ1-40, tTau and pTau measured on the LUMIPULSE G fully automated platform

Alcolea, D.; Pegueroles, J.; Munoz, L.; Camacho, V.; Lopez-Mora, D.; Fernandez-Leon, A.; Le Bastard, N.; Huyck, E.; Nadal, A.; Olmedo, V.; Montal, V.; Vilaplana, E.; Clarimon, J.; Blesa, R.; Fortea, J.; Lleo, A.

10.1101/476937 — neuroscience — Posted on 2018-11-27

492 The Pupillary Light Response Reflects Visual Working Memory Content

Husta, C.; Dalmaijer, E.; Belopolsky, A.; Mathot, S.

10.1101/477562 — neuroscience — Posted on 2018-11-27

493 Failure of complex systems, cascading disasters, and the onset of disease

Webster, A. J.

10.1101/476242 — cancer biology — Posted on 2018-11-27

494 Expression variation analysis for tumor heterogeneity in single-cell RNA-sequencing data

Davis-Marcisak, E. F.; Orugunta, P.; Stein-O'Brien, G.; Puram, S. V.; Roussos Torres, E.; Hopkins, A.; Jaffee, E. M.; Favorov, A. V.; Afsari, B.; Goff, L. A.; Fertig, E. J.

10.1101/479287 — bioinformatics — Posted on 2018-11-27

495 Subjective estimates of uncertainty and volatility during gambling predict impulsivity after subthalamic deep brain stimulation for Parkinson’s disease

Paliwal, S.; Mosley, P.; Breakspear, M.; Coyne, T.; Silburn, P.; Aponte, E.; Mathys, C.; Stephan, K.

10.1101/477364 — neuroscience — Posted on 2018-11-27

496 Garcinia cambogia extract removes calcium oxalate kidney stones in both genetic and non-genetic Drosophila models of nephrolithiasis

Fan, Q.; Feng, X.; Hong, X.; Gong, S.; Tian, J.; Hou, F.; Zhang, F.

10.1101/477570 — pharmacology and toxicology — Posted on 2018-11-27

497 Consequences of SNP codings, PCA variants, and PCA graphs for elucidating population structure

Gauch, H. G.; Qian, S.; Piepho, H.-P.; Zhou, L.; Chen, R.

10.1101/393611 — genomics — Posted on 2018-11-27

498 Saving killer whale populations from a global collapse: rebuttal against Desforges et al. (2018)

Witting, L.

10.1101/474320 — ecology — Posted on 2018-11-27

499 SqueezeM, a highly portable, fully automatic metagenomic analysis pipeline

Tamames, J.; Puente-Sanchez, F.

10.1101/347559 — bioinformatics — Posted on 2018-11-27

500 Deep-learning-based label-free segmentation of cell nuclei in time-lapse refractive index tomograms

Lee, J.; Kim, H.; Cho, H.; Jo, Y.; Song, Y.; Ahn, D.; Lee, K.; Park, Y.; Ye, S.-J.

10.1101/478925 — biophysics — Posted on 2018-11-27

501 Population genome sequencing of the scab fungal species Venturia inaequalis, Venturia pirina, Venturia aucupariae and Venturia asperata.

Le Cam, B.; Sargent, D.; Gouzy, J.; Amselem, J.; Marie-Noelle, B.; Olivier, B.; Brown, S.; Caffier, V.; De Gracia, M.; Debuchy, R.; Duvaux, L.; Payen, T.; Sannier, M.; Shiller, J.; Collemare, J.; Lemaire, C.

10.1101/477216 — plant biology — Posted on 2018-11-27

502 The Flowering Hormone Florigen Accelerates Secondary Cell Wall Biogenesis to Harmonize Vascular Maturation with Reproductive Development

Shalit-Kaneh, A.; Eviatar-Ribak, T.; Horev, G.; Suss, N.; Aloni, R.; Eshed, Y.; Lifschitz, E.

10.1101/476028 — plant biology — Posted on 2018-11-27

503 BAPC-assisted CRISPR/Cas9 System: Targeted Delivery into Adult Ovaries for Heritable Germline Gene Editing (Arthropoda: Hemiptera)

Hunter, W. B.; Gonzalez, M. T.; Tomich, J.

10.1101/478743 — genetics — Posted on 2018-11-27

504 Increased prediction ability in Norway spruce trials using a marker x environment interaction and non-additive genomic selection model

Chen, Z.-Q.; Baison, J.; Pan, J.; Westin, J.; Garcia-Gil, M. R.; Wu, H. X.

10.1101/478404 — genetics — Posted on 2018-11-27

505 Ecological networks: Pursuing the shortest path, however narrow and crooked

Costa, A.; Martin Gonzalez, A. M.; Guizien, K.; Doglioli, A. M.; Gomez, J. M.; Petrenko, A.; Allesina, S.

10.1101/475715 — ecology — Posted on 2018-11-27

506 A SOSEKI-based coordinate system interprets global polarity cues in Arabidopsis

Yoshida, S.; van der Schuren, A.; van Dop, M.; van Galen, L.; Saiga, S.; Adibi, M.; Moller, B.; Marhavy, P.; Smith, R.; Friml, J.; Weijers, D.

10.1101/479113 — plant biology — Posted on 2018-11-27

507 CNApp: a web-based tool for integrative analysis of genomic copy number alterations in cancer

Franch-Exposito, S.; Bassaganyas, L.; Vila-Casadesus, M.; Hernandez-Illan, E.; Esteban-Fabro, R.; Diaz-Gay, M.; Lozano, J. J.; Castells, A.; Llovet, J. M.; Castellvi-Bel, S.; Camps, J.

10.1101/479667 — genomics — Posted on 2018-11-27

508 Cellular dynamics and genomic identity of centromeres in Rice Blast

Yadav, V.; Yang, F.; Reza, M. H.; Sanyal, K.; Naqvi, N. I.

10.1101/475574 — genetics — Posted on 2018-11-27

509 Excess light priming in Arabidopsis thaliana with altered DNA methylomes

Stone, B. A.; Ganguly, D. R.; Eichten, S. R.; Pogson, B. J.

10.1101/475798 — plant biology — Posted on 2018-11-27

510 HNI9 and HY5 maintain ROS homeostasis under high nitrogen provision in Arabidopsis

Bellegarde, F.; Maghiaoui, A.; Boucherez, J.; Krouk, G.; Lejay, L.; Bach, L.; Gojon, A.; Martin, A.

10.1101/479030 — plant biology — Posted on 2018-11-27

511 Integrated multiomic analysis from chromatin to translation of stimulus-regulated gene activity exposes dominant patterns of nuclear-level control

Lee, T. A.; Bailey-Serres, J.

10.1101/479980 — plant biology — Posted on 2018-11-27

512 Single-nucleus RNA-seq identifies divergent populations of FSHD2 myotube nuclei

Jiang, S.; Williams, K.; Kong, X.; Zeng, W.; Ma, X.; Tawil, R.; Yokomori, K.; Mortazavi, A.

10.1101/478636 — genomics — Posted on 2018-11-27

513 A Statistical Procedure for Genome-wide Detection of QTL Hotspots Using Public Databases with Application to Rice

Kao, C.-H.; Yang, M.-H.; Wu, D.-H.

10.1101/479725 — genetics — Posted on 2018-11-27

514 Role of geography and climatic oscillations in governing into-India dispersal of freshwater snails of the family: Viviparidae

Sil, M.; Madhyastha, A.; Karanth, K. P.

10.1101/476820 — evolutionary biology — Posted on 2018-11-27

515 Partitioning index and non-structural carbohydrate dynamics among contrasting cassava genotypes under early terminal water stress

Duque, L.; Setter, T. L.

10.1101/479535 — plant biology — Posted on 2018-11-27

516 The effects of trans-chalcone and chalcone hydrate on the growth of Babesia and Theileria

Batiha, G. E.-S.; Beshbishy, A. M.; Tayebwa, D. S.; Adeyemi, O. S.; Shaheen, H. M.; Yokoyama, N.; Igarashi, I.

10.1101/480657 — microbiology — Posted on 2018-11-27

517 Identification of large-scale genomic rearrangements during wheat evolution and the underlying mechanisms

Bariah, I.; Keidar-Friedman, D.; Kashkush, K.

10.1101/478933 — genomics — Posted on 2018-11-27

518 The embryonic transcriptome of Arabidopsis thaliana

Hofmann, F.; Schon, M. A.; Nodine, M. D.

10.1101/479584 — genomics — Posted on 2018-11-27

519 Ecological and life history traits are associated with Ross River virus infection among sylvatic mammals in Australia

Walsh, M.

10.1101/475814 — ecology — Posted on 2018-11-27

520 Base editing generates substantial off-target single nucleotide variants

Yang, H.; Li, Y.; Zuo, E.; Sun, Y.; Wei, W.; Yuan, T.; Ying, W.; Steinmetz, L. M.

10.1101/480145 — genomics — Posted on 2018-11-27

521 Biochat: a database for natural language processing of Gene Expression Omnibus data

Khomtchouk, B. B.; Dyomkin, V.; Vand, K. A.; Assimes, T.; Gozani, O.

10.1101/480020 — bioinformatics — Posted on 2018-11-27

522 Resilience of BST-2/Tetherin structure to single amino acid substitutions

Roy, I. R.; Sutton, C. K.; Berndsen, C. E.

10.1101/479402 — biochemistry — Posted on 2018-11-26

523 A giant ankyrin-B mechanism for neuro-diversity/divergence through stochastic ectopic axon projections

Yang, R.; Walder-Christensen, K. K.; Kim, N.; Wu, D.; Lorenzo, D.; Badea, A.; Gu, S.; Streff, H.; Soler-Alfonso, C.; Meng, L.; Wetsel, W. C.; Jiang, Y.-H.; Yin, H.; Bennett, V.

10.1101/479741 — neuroscience — Posted on 2018-11-26

524 MicroRNAs modulate alternative splicing in the C. elegans intestine and body muscle tissues

Kotagama, K.; Schorr, A. L.; Steber, H. S.; Mangone, M.

10.1101/479832 — molecular biology — Posted on 2018-11-26

525 Lipid Droplet metabolism dependent microbial defense in pre-immune zebrafish embryos

Dutta, A.; Banerjee, S.; Kumar Sinha, D.

10.1101/478859 — developmental biology — Posted on 2018-11-26

526 IFT25 is required for the construction of the trypanosome flagellum

Huet, D.; Blisnick, T.; Perrot, S.; Bastin, P.

10.1101/479642 — cell biology — Posted on 2018-11-26

527 6-Phosphogluconate Dehydrogenase Links Cytosolic Carbohydrate Metabolism to Protein Secretion

Li, H.; Ericsson, M.; Rabasha, B.; Budnik, B.; Wagner, B.; Garraway, L.; Schreiber, S.

10.1101/480129 — biochemistry — Posted on 2018-11-26

528 Inactive USP14 and inactive UCHL5 cause accumulation of distinct ubiquitinated proteins in mammalian cells

Chadchankar, J.; Korboukh, V.; Doig, P.; Jacobsen, S.; Brandon, N.; Moss, S.; Wang, Q.

10.1101/479758 — molecular biology — Posted on 2018-11-26

529 Lin28B is involved in curcumin-reversed paclitaxel chemoresistance and associated with poor prognosis in hepatocellular carcinoma

Tian, N.; Shangguan, W.; Zhou, Z.; yao, y.; Fan, C.; Cai, L.

10.1101/478479 — cell biology — Posted on 2018-11-26

530 661W photoreceptor cell line as a cell model for studying retinal ciliopathies

Wheway, G.; Nazlamova, L.; Turner, D.; Cross, S.

10.1101/479212 — cell biology — Posted on 2018-11-26

531 Differential requirement for centriolar satellites in cilium formation among different vertebrate cells

Odabasi, E.; Ohlsen, S. K.; Gul, S.; Kavakli, H. I.; Andersen, J. S.; Firat-Karalar, E. N.

10.1101/478974 — cell biology — Posted on 2018-11-26

532 Olanzapine: a full and potent agonist at the hM4D(Gi) DREADD amenable to clinical translation of chemogenetics

Weston, M.; Kaserer, T.; Carpenter, J. C.; Snowball, A.; Knauss, S.; Lignani, G.; Schorge, S.; Kullmann, D. M.; Lieb, A.

10.1101/477513 — neuroscience — Posted on 2018-11-26

533 Acidity promotes tumor progression by altering macrophage phenotype in prostate cancer

El-Kenawi, A.; Gatenbee, C.; Robertson-Tessi, M.; Bravo, R.; Dhillon, J.; Balagurunathan, Y.; Berglund, A.; Visvakarma, N.; Ibrahim-Hashim, A.; Choi, J.; Luddy, K.; Gatenby, R.; Thomas, S. P.; Anderson, A.; Ruffell, B.; Gillies, R.

10.1101/478420 — immunology — Posted on 2018-11-26

534 MR-TRYX: Exploiting horizontal pleiotropy to infer novel causal pathways

Cho, Y.; Haycock, P. C.; Gaunt, T. R.; Zheng, J.; Morris, A. P.; Davey Smith, G.; Hemani, G.

10.1101/476085 — bioinformatics — Posted on 2018-11-26

535 Cardelino: Integrating whole exomes and single-cell transcriptomes to reveal phenotypic impact of somatic variants

McCarthy, D. J.; Rostom, R.; Huang, Y.; Kunz, D. J.; Danecek, P.; Bonder, M. J.; Hagai, T.; HipSci Consortium, ; Wang, W.; Gaffney, D. J.; Simons, B. D.; Stegle, O.; Teichmann, S. A.

10.1101/413047 — genomics — Posted on 2018-11-26

536 A Dual Controllability Analysis of Influenza Virus-Host Protein-Protein Interaction Networks for Antiviral Drug Target Discovery

Ackerman, E. E.; Alcorn, J. F.; Hase, T.; Shoemaker, J. E.

10.1101/429712 — systems biology — Posted on 2018-11-26

537 The representational dynamics of visual objects in rapid serial visual processing streams

Grootswagers, T.; Robinson, A. K.; Carlson, T. A.

10.1101/394148 — neuroscience — Posted on 2018-11-26

538 Discovery and validation of candidate smoltification gene expression biomarkers across multiple species and ecotypes of Pacific salmonids

Houde, A. L. S.; Gunther, O. P.; Strohm, J.; Ming, T. J.; Li, S.; Patterson, D. A.; Farrell, A. P.; Hinch, S. G.; Miller, K. M.

10.1101/474692 — genomics — Posted on 2018-11-26

539 DeepTCR: a deep learning framework for revealing structural concepts within TCR Repertoire

Sidhom, J.-W.; Larman, H. B.; Pardoll, D. M.; Baras, A. S.

10.1101/464107 — bioinformatics — Posted on 2018-11-26

540 Starvation-dependent regulation of eIF6 through multisite phosphorylation by GSK3β

Jungers, C. F.; Elliff, J. M.; Masson-Meyers, D. S.; Phiel, C. J.; Origanti, S.

10.1101/476978 — molecular biology — Posted on 2018-11-26

541 Disrupting Transcriptional Feedback Yields an Escape-Resistant Antiviral

Chaturvedi, S.; Wolf, M.; Vardi, N.; Chan, M.; Weinberger, L.

10.1101/464495 — microbiology — Posted on 2018-11-26

542 A validation of the diathesis-stress model for depression in Generation Scotland.

Arnau-Soler, A.; Adams, M.; Clarke, T.-K.; MacIntyre, D.; Milburn, K.; Navrady, L.; Generation Scotland, ; Major Depressive Disorder Working Group of the Psychiatric Genomics Consortium, ; Hayward, C.; McIntosh, A.; Thomson, P.

10.1101/389494 — genomics — Posted on 2018-11-26

543 Detection of low-frequency mutations and removal of heat-induced artifactual mutations using Duplex Sequencing

Ahn, E. H.; Lee, S. H.

10.1101/474353 — genomics — Posted on 2018-11-26

544 Balance of Mechanical Forces Drives Endothelial Gap Formation and May Facilitate Cancer and Immune-Cell Extravasation

Escribano, J.; Chen, M.; Moeendarbary, E.; Cao, X.; Shenoy, V.; Garcia-Aznar, J. M.; Kamm, R.; Spill, F.

10.1101/375931 — bioengineering — Posted on 2018-11-26

545 R/qtl2: software for mapping quantitative trait loci with high dimensional data and multi-parent populations

Broman, K. W.; Gatti, D. M.; Simecek, P.; Furlotte, N. A.; Prins, P.; Sen, S.; Yandell, B. S.; Churchill, G. A.

10.1101/414748 — genetics — Posted on 2018-11-26

546 Mammalian SWI/SNF collaborates with a polycomb-associated protein to regulate male germ line transcription in the mouse

Menon, D. U.; Shibata, Y.; Mu, W.; Magnuson, T.

10.1101/476143 — developmental biology — Posted on 2018-11-26

547 Genetic mechanisms of primary chemotherapy resistance in pediatric acute myeloid leukemia: A report from the TARGET initiative

McNeer, N.; Philip, J.; Geiger, H.; Ries, R.; Lavallee, V.-P.; Walsh, M.; Shah, M.; Arora, K.; Emde, A.-K.; Robine, N.; Alonzo, T. A.; Kolb, E. A.; Gamis, A. S.; Smith, M.; Gerhard, D. S.; Guidry-Auvil, J.; Meshinchi, S.; Kentsis, A.

10.1101/475376 — cancer biology — Posted on 2018-11-26

548 Pin1 Regulatory miRNAs as Novel Candidates for Alzheimer’s Disease Treatment

Heidari, E.; Sharifi-Zarchi, A.; Shahpasand, K.; Salehi Siavashani, E.; Amiri, Z.; Rasooli, M.

10.1101/472985 — neuroscience — Posted on 2018-11-26

549 A novel method for systematic genetic analysis and visualization of phenotypic heterogeneity applied to orofacial clefts

Carlson, J.; Anand, D.; Butali, A.; Buxo, C.; Christensen, K.; Deleyiannis, F.; Hecht, J.; Moreno-Uribe, L.; Orioli, I.; Padilla, C.; Shaffer, J.; Vieira, A.; Wehby, G.; Weinberg, S.; Murray, J.; Beaty, T.; Saadi, I.; Lachke, S.; Marazita, M.; Feingold, E.; Leslie, E.

10.1101/332270 — genetics — Posted on 2018-11-26

550 Scavenger: A pipeline for recovery of unaligned reads utilising similarity with aligned reads

Yang, A.; Tang, J. Y. S.; Troup, M.; Ho, J. W. K.

10.1101/345876 — bioinformatics — Posted on 2018-11-26

551 Reliable Multiplex Sequencing with Rare Index Mis-Assignment on DNB-Based NGS Platform

Li, Q.; Zhao, X.; Zhang, W.; Wang, L.; Wang, J.; Xu, D.; Mei, Z.; Liu, Q.; Du, S.; Li, Z.; Liang, X.; Wang, X.; Wei, H.; Liu, P.; Zou, J.; Shen, H.; Chen, A.; Drmanac, S.; Liu, J. S.; Li, L.; Jiang, H.; Zhang, Y.; Wang, J.; Yang, H.; Xu, X.; Drmanac, R.; Jiang, Y.

10.1101/343137 — genomics — Posted on 2018-11-26

552 Rampant hybrid misexpression in craniofacial tissues within a recent adaptive radiation of Cyprinodon pupfishes

McGirr, J. A.; Martin, C. H.

10.1101/372912 — evolutionary biology — Posted on 2018-11-26

553 A three-dimensional culture model of innervated human skeletal muscle enables studies of the adult neuromuscular junction and disease modeling

Afshar Bakooshli, M.; Lippmann, E. S.; Mulcahy, B.; Iyer, N.; Nguyen, C. T.; Tung, K.; Stewart, B. A.; van den Dorpel, H.; Fuehrmann, T.; Shoichet, M. S.; Bigot, A.; Pegoraro, E.; Ahn, H.; Ginsberg, H.; Zhen, M.; Ashton, R. S.; Gilbert, P. M.

10.1101/275545 — bioengineering — Posted on 2018-11-26

554 Science podcasts: analysis of global production and output from 2004 to 2018

MacKenzie, L. E.

10.1101/298356 — scientific communication and education — Posted on 2018-11-26

555 The Wnt segment polarity pathway and TMED2 protein may interact via a lectin- and decoy-type mechanism

Fiedler, K.

10.1101/056531 — bioinformatics — Posted on 2018-11-26

556 Ca2+-activated K+ channels reduce network excitability, improving adaptability and energetics for transmitting and perceiving sensory information

Li, X.; Abou Tayoun, A.; Song, Z.; Dau, A.; Rien, D.; Jaciuch, D.; Dongre, S.; Blanchard, F.; Nikolaev, A.; Zheng, L.; Bollepalli, M. K.; Chu, B.; Hardie, R. C.; Dolph, P. J.; Juusola, M.

10.1101/476861 — neuroscience — Posted on 2018-11-26

557 Strengths and potential pitfalls of hay-transfer for ecological restoration revealed by RAD-seq analysis in two floodplain Arabis species

Dittberner, H.; Becker, C.; Jiao, W.-B.; Schneeberger, K.; Hoellzel, N.; Tellier, A.; de Meaux, J.

10.1101/474858 — ecology — Posted on 2018-11-26

558 Long-term balancing selection drives evolution of immunity genes in Capsella

Koenig, D.; Hagmann, J.; Li, R.; Bemm, F.; Slotte, T.; Nueffer, B.; Wright, S.; Weigel, D.

10.1101/477612 — evolutionary biology — Posted on 2018-11-26

559 miR-425 suppresses EMT and inhibits the development of TNBC (triple-negative breast cancer) by targeting TGF-β 1/SMAD 3 signaling pathway

Liu, Y.; Qiao, H.; chen, j.

10.1101/477877 — cancer biology — Posted on 2018-11-26

560 Large Fatty Acid-derived Aβ42 oligomers Form Ring-like Assemblies

Xi, W.; Dean, D. N.; Stockmal, K. A.; Morgan, S. E.; Hansmann, U. H. E.; Rangachari, V.

10.1101/390567 — biophysics — Posted on 2018-11-26

561 Sex-specific co-expression networks and sex-biased gene expression in the salmonid Brook Charr Salvelinus fontinalis

Sutherland, B. J. G.; Prokkola, J. M.; Audet, C.; Bernatchez, L.

10.1101/305680 — genomics — Posted on 2018-11-26

562 Realtime 2-5A kinetics suggests interferons β and {lambda} evade global arrest of translation by RNase L

Chitrakar, A.; Rath, S.; Donovan, J.; Demarest, K.; Li, Y.; Rao Sridhar, R.; Weiss, S.; Kotenko, S.; Wingreen, N.; Korennykh, A.

10.1101/476341 — cell biology — Posted on 2018-11-26

563 The human secretome - the proteins secreted from human cells

10.1101/465815 — molecular biology — Posted on 2018-11-26

564 Long read-based de novo assembly of low complex metagenome samples results in finished genomes and reveals insights into strain diversity and an active phage system

Somerville, V.; Lutz, S.; Schmid, M.; Frei, D.; Moser, A.; Irmler, S.; Frey, J. E.; Ahrens, C. H.

10.1101/476747 — genomics — Posted on 2018-11-26

565 Attraction to pheromones in Caenorhabditis elegans can be reversed through associative learning

Dal Bello, M.; Perez-Escudero, A.; Schroeder, F. C.; Gore, J.

10.1101/476648 — ecology — Posted on 2018-11-26

566 Structural insights into SETD3-mediated histidine methylation on β-actin

Guo, Q.; Liao, S.; Tomaka, W.; Kwiatkowski, S.; Wu, G.; Drozak, J.; Min, J.; Xu, C.

10.1101/476705 — biochemistry — Posted on 2018-11-26

567 Variability of soybean response to rhizobia inoculant, Vermicompost, and a legume-specific fertilizer blend in Siaya County of Kenya

Mathenge, C.; Thuita, M.; Masso, C.; Gweyi, J. O.; Vanlauwe, B.; Catherine Mathenge, Cargele Masso, Joseph Gweyi-Onyango and Bernard Vanlauwe,

10.1101/476291 — plant biology — Posted on 2018-11-26

568 Campylobacter jejuni transmission and colonisation in broiler chickens is inhibited by Faecal Microbiota Transplantation.

Gilroy, R.; Chaloner, G.; Wedley, A.; Lacharme-Lora, L.; Jopson, S.; Wigley, P.

10.1101/476119 — microbiology — Posted on 2018-11-26

569 Using the modified male osteoporosis self-assessment tool for Taiwan to predict osteoporosis onset - a sub-study of the Taiwan osteoporosis survey

Chen, Y.-C.; Liu, D.-H.; Cheng, T.-T.; Chen, J.-F.; Yu, S.-F.; Chiu, W.-C.; Hsu, C.-Y.

10.1101/479303 — immunology — Posted on 2018-11-26

570 Reverse-Correlation Analysis of the Mechanosensation Circuit and Behavior in C. elegans Reveals Temporal and Spatial Encoding

Porto, D. A.; Giblin, J.; Zhao, Y.; Lu, H.

10.1101/147363 — bioengineering — Posted on 2018-11-26

571 Hepatic γ-Amino Butyric Acid Release Drives Hyperinsulinemia and Insulin Resistance

Geisler, C. E.; Ghimire, S.; Hepler, C.; Higgins, M. R.; Fregosi, R. F.; Renquist, B. J.

10.1101/475608 — physiology — Posted on 2018-11-26

572 Social determinants of health, the family, and childrens personal hygiene: a comparative study.

Ramos-Morcillo, A. J.; Moreno-Martinez, F. J.; Hernandez-Susarte, A. M.; Ruzafa-Martinez, M.

10.1101/477943 — epidemiology — Posted on 2018-11-26

573 Genetic dissection of a Leishmania flagellar proteome demonstrates requirement for directional motility in sand fly infections

Beneke, T.; Demay, F.; Hookway, E.; Ashman, N.; Jeffery, H.; Smith, J.; Valli, J.; Becvar, T.; Myskova, J.; Lestinova, T.; Shafiq, S.; Sadlova, J.; Volf, P.; Wheeler, R. J.; Gluenz, E.

10.1101/476994 — cell biology — Posted on 2018-11-26

574 T cells instruct dendritic cells to produce inflammasome independent IL-1β causing systemic inflammation

Jain, A.; Irizarry-Caro, R. A.; Chawla, A. S.; Philip, N. H.; Carroll, K. R.; Katz, J.; Oberst, A.; Chervonsky, A.; Pasare, C.

10.1101/475517 — immunology — Posted on 2018-11-26

575 Limit distribution of the quartet balance index for Aldous’s β ≥ 0-model

Bartoszek, K.

10.1101/277376 — evolutionary biology — Posted on 2018-11-26

576 The long noncoding RNA Hand2as orchestrates heart development through regulation of precise expression of HAND2

Han, X.; Zhang, J.; Liu, Y.; Fan, X.; Ai, S.; Luo, Y.; Li, X.; Luo, S.; Zheng, H.; Yue, Y.; Chang, Z.; Yang, Z.; Tang, F.; He, A.; Shen, X.

10.1101/475723 — developmental biology — Posted on 2018-11-26

577 Human IL-2 receptor β mutations associated with defects in immunity and peripheral tolerance

Zhang, Z.; Gothe, F.; Pennamen, P.; James, J.; MacDonald, D.; Mata, C. P.; Modis, Y.; Acres, M.; Haller, W.; Bowen, C.; Doffinger, R.; Sinclair, J.; Brothers, S.; Alazami, A.; Zhang, Y.; Matthews, H.; Naudion, S.; Pelluard, F.; Yamazaki, Y.; Notarangelo, L.; Almousa, H.; Thaventhiran, J.; Engelhardt, K. R.; Hambleton, S.; Rooryck, C.; Smith, K. G. C.; Lenardo, M. J.

10.1101/476697 — immunology — Posted on 2018-11-26

578 B cells sustain inflammation and improve survival in human melanoma

Griss, J.; Bauer, W.; Wagner, C.; Maurer-Granofszky, M.; Simon, M.; Chen, M.; Steinberger, P.; Grabmeier-Pfistershammer, K.; Roka, F.; Penz, T.; Bock, C.; Zhang, G.; Herlyn, M.; Glatz, K.; Laubli, H.; Mertz, K. D.; Petzelbauer, P.; Wiesner, T.; Hartl, M.; Pickl, W.; Somasundaram, R.; Wagner, S. N.

10.1101/478735 — cancer biology — Posted on 2018-11-26

579 Long-term balancing selection drives evolution of immunity genes in Capsella

Koenig, D.; Hagmann, J.; Li, R.; Bemm, F.; Slotte, T.; Nueffer, B.; Wright, S.; Weigel, D.

10.1101/477612 — evolutionary biology — Posted on 2018-11-26

580 The coast-wide collapse in marine survival of west coast Chinook and steelhead: slow moving catastrophe or deeper failure?

Welch, D. W.; Porter, A. D.; Rechisky, E. L.

10.1101/476408 — ecology — Posted on 2018-11-26

581 Structures of TOG1 and TOG2 From the Human Microtubule Dynamics Regulator CLASP1

Leano, J. B.; Slep, K. C.

10.1101/479766 — biophysics — Posted on 2018-11-26

582 Naught all zeros in sequence count data are the same

Silverman, J. D.; Roche, K.; Mukherjee, S.; David, L. A.

10.1101/477794 — bioinformatics — Posted on 2018-11-26

583 Spatio-temporal organization of cell assemblies in Nucleus Reuniens during slow oscillations

Angulo-Garcia, D.; Ferraris, M.; Ghestem, A.; Bernard, C.; Quilichini, P. P.

10.1101/474973 — neuroscience — Posted on 2018-11-26

584 Lack of detectable neoantigen depletion in the untreated cancer genome

Van den Eynden, J.; Jimenez-Sanchez, A.; Miller, M.; Lekholm, E. L.

10.1101/478263 — genomics — Posted on 2018-11-26

585 Unexpected evolution following connectedness loss

Masier, S.; Bonte, D.

10.1101/476093 — ecology — Posted on 2018-11-26

586 Molecular complexity of the major urinary protein system of the Norway rat, Rattus norvegicus

Gomez-Baena, G.; Armstrong, S. D.; Halstead, J. O.; Prescott, M.; Roberts, S. A.; McLean, L.; Mudge, J. M.; Hurst, J. L.; Beynon, R. J.

10.1101/478362 — biochemistry — Posted on 2018-11-26

587 Mechanistic origin of cell-size control and homeostasis in bacteria

Si, F.; Le Treut, G.; Sauls, J. T.; Vadia, S.; Levin, P. A.; Jun, S.

10.1101/478818 — systems biology — Posted on 2018-11-26

588 Impact of high phosphorous and sodium on productivity and stress tolerance of Arundo donax plants

Cocozza, C.; Brilli, F.; Miozzi, L.; Pignattelli, S.; Rotunno, S.; Brunetti, C.; Giordano, C.; Pollastri, S.; Centritto, M.; Accotto, G. P.; Tognetti, R.; Loreto, F.

10.1101/477810 — physiology — Posted on 2018-11-26

589 Identification and expression of Lactobacillus paracasei genes for adaptation to desiccation and rehydration

Palud, A.; Salem, K.; Cavin, J.-F.; Beney, L.; Licandro, H.

10.1101/475830 — microbiology — Posted on 2018-11-26

590 Copy number variation in small nucleolar RNAs regulates personality behavior

Keshavarz, M.; Krebs, R.; Refki, P. N.; Guenther, A.; Brückl, T. M.; Binder, E.; Tautz, D.

10.1101/476010 — evolutionary biology — Posted on 2018-11-26

591 Sufficiency analysis of estrogen responsive enhancers using synthetic activators

Ginley-Hidinger, M.; Carleton, J. B.; Rodriguez, A. C.; Berrett, K. C.; Gertz, J.

10.1101/479709 — systems biology — Posted on 2018-11-26

592 Stringent response-mediated control of rRNA processing via the ribosomal assembly GTPase Era

Wood, A.; Irving, S. E.; Bennison, D. J.; Corrigan, R. M.

10.1101/477745 — microbiology — Posted on 2018-11-26

593 Acidity promotes tumor progression by altering macrophage phenotype in prostate cancer

10.1101/478420 — immunology — Posted on 2018-11-26

594 TCR and inflammatory signals tune human MAIT cells to exert specific tissue repair and effector functions

Leng, T.; King, T.; Friedrich, M.; Christoforidou, Z.; McCuaig, S.; Neyazi, M.; Arancibia-Carcamo, C. V.; Powrie, F.; Oxford IBD Investigators, ; Marchi, E.; Sanchesperes, R.; Willberg, C.; Klenerman, P.

10.1101/475913 — immunology — Posted on 2018-11-26

595 Host-pathogen coevolution increases genetic variation in susceptibility to infection

Duxbury, E. M.; Day, J. P.; Maria Vespasiani, D.; Thüringer, Y.; Tolosana, I.; Smith, S. C.; Tagliaferri, L.; Kamacioglu, A.; Lindsley, I.; Love, L.; Unckless, R.; Jiggins, F. M.; Longdon, B.

10.1101/474924 — evolutionary biology — Posted on 2018-11-26

596 Statistical physics of liquid brains

Pinero, J.; Sole, R.

10.1101/478412 — systems biology — Posted on 2018-11-26

597 Reversing an extracellular electron transfer pathway for electrode-driven NADH generation

Tefft, N. M.; TerAvest, M. A.

10.1101/476481 — synthetic biology — Posted on 2018-11-26

598 Effects of food restriction on body mass, energy metabolism and thermogenesis in a tree shrew (Tupaia belangeri)

Gong, x.; Zhang, h.; Zhang, d.; Zhu, w.

10.1101/478487 — physiology — Posted on 2018-11-26

599 Decoration of the enterococcal polysaccharide antigen EPA is essential for virulence, cell surface charge and sensitivity to effector molecules of innate immunity

Smith, R. E.; Salamaga, B.; Szkuta, P.; Hajdamowicz, N. H.; Prajsnar, T. K.; Bulmer, G.; Fontaine, T.; Kołodziejczyk, J.; Herry, J.-M.; Hounslow, A.; Williamson, M. P.; Serror, P.; Mesnage, S.

10.1101/479022 — microbiology — Posted on 2018-11-26

600 Assessing the protective potential of H1N1 influenza virus hemagglutinin head and stalk antibodies in humans

Christensen, S. R.; Toulmin, S. A.; Griesman, T.; Lamerato, L. E.; Petrie, J.; Martin, E. T.; Monto, A.; Hensley, S. E.

10.1101/478222 — microbiology — Posted on 2018-11-26

601 Inferring putative transmission clusters with Phydelity

Han, A.; Parker, E.; Maurer-Stroh, S.; Russell, C.

10.1101/477653 — bioinformatics — Posted on 2018-11-26

602 The crystal structure and localization of Trypanosoma brucei invariant surface glycoproteins suggest a more permissive VSG coat in the tsetse-transmitted metacyclic stage

Casas-Sanchez, A.; Perally, S.; Ramaswamy, R.; Haines, L. R.; Rose, C.; Yunta, C.; Aguilera-Flores, M.; Lehane, M. J.; Almeida, I. C.; Boulanger, M. J.; Acosta-Serrano, A.

10.1101/477737 — microbiology — Posted on 2018-11-26

603 Quantitative analysis reveals reciprocal regulations underlying recovery dynamics of thymocytes and thymic environment

Kaneko, K. B.; Tateishi, R.; Miyao, T.; Akiyama, N.; Yokota, R.; Akiyama, T.; Kobayashi, T. J.

10.1101/478164 — immunology — Posted on 2018-11-26

604 Size, shape and structure of insect wings

Salcedo, M. K.; Hoffmann, J.; Donoughe, S.; Mahadevan, L.

10.1101/478768 — evolutionary biology — Posted on 2018-11-26

605 Transcriptional heterogeneity in cancer-associated regulatory T cells is predictive of survival.

Borcherding, N.; Ahmed, K. K.; Voigt, A. P.; Vishwakarma, A.; Kolb, R.; Kluz, P.; Pandey, G.; Gibson-Corley, K. N.; Klesney-Tait, J.; Zhu, Y.; Lu, J.; Lu, J.; Huang, X.; Cheng, J.; Zheng, S. G.; Wu, X.; Zakharia, Y.; Zhang, W.

10.1101/478628 — cancer biology — Posted on 2018-11-26

606 Generative adversarial network (GAN) enabled on-chip contact microscopy

Chen, X.; Zhang, H.; Zhu, T.; Yao, Y.; Jin, D.; Fei, P.

10.1101/478982 — biophysics — Posted on 2018-11-26

607 Entropic forces drive cellular contact guidance

Buskermolen, G.; Suresh, H.; Shishvan, S.; Vigliotti, A.; deSimone, A.; Kurniawan, N.; Bouten, C.; Deshpande, V.

10.1101/479071 — biophysics — Posted on 2018-11-26

608 Historical contingency shapes adaptive radiation in Antarctic fishes

Daane, J. M.; Dornburg, A.; Smits, P.; MacGuigan, D. J.; Hawkins, M. B.; Near, T. J.; Detrich, H. W.; Harris, M. P.

10.1101/478842 — evolutionary biology — Posted on 2018-11-26

609 Split sex-ratio and variability in aggressive behavior in the ant Cataglyphis niger

Inbar, S.; Privman, E.

10.1101/478552 — evolutionary biology — Posted on 2018-11-26

610 In vivo generation of post-infarct mouse cardiac muscle by cardiomyocyte progenitors produced with a reproducible laminin-promoted human stem cell differentiation system

Yap, L.; Wang, J.-W.; Moreno-Moral, A.; Chong, L. Y.; Sun, Y.; Harmston, N.; Wang, X.; Chong, S. Y.; Ohman, M. K.; Wei, H.; Bunte, R.; Ghosh, S.; Cook, S.; Hovatta, O.; de Kleijn, D. P. V.; Petretto, E.; Tryggvason, K.

10.1101/478883 — cell biology — Posted on 2018-11-26

611 Reverse vaccinology approach to design a novel multi-epitope subunit vaccine against avian influenza A (H7N9) virus

Hasan, M.; Ghosh, P. p.; Azim, K. F.; Mukta, S.; Abir, R. A.; Nahar, J.; Khan, M. M. H.

10.1101/478453 — bioinformatics — Posted on 2018-11-26

612 A population of bang-bang switches of defective interfering particles makes within-host dynamics of dengue virus controllable

Mapder, T.; Clifford, S.; Aaskov, J.; Burrage, K.

10.1101/479527 — systems biology — Posted on 2018-11-26

613 Categorical encoding of decision variables in orbitofrontal cortex

Onken, A.; Xie, J.; Panzeri, S.; Padoa-Schioppa, C.

10.1101/479519 — neuroscience — Posted on 2018-11-26

614 Curcumin induces mild anemia in a DSS-induced colitis mouse model maintained on an iron-sufficient diet

Samba Mondonga, M.; Constante, M.; Fragoso, G.; Calve, A.; Santos, M. M.

10.1101/479428 — systems biology — Posted on 2018-11-26

615 Whole Body Periodic Acceleration Improves Survival and Microvascular Leak in a Murine Endotoxin Model

Adams, J. A.; Uryash, A.; Lopez, J. R.; Sackner, M. A.

10.1101/479477 — physiology — Posted on 2018-11-26

616 Hippocampal connectivity with sensorimotor cortex during volitional finger movements. I. Laterality and relationship to motor learning.

Burman, D. D.

10.1101/479451 — neuroscience — Posted on 2018-11-26

617 Psittacid Adenovirus-2 infection in the critically endangered orange-bellied parrot (Neophema chrysogastor): A key threatening process or an example of a host-adapted virus?

Yang, N.; McLelland, J.; McLelland, D.; Clarke, J.; Woolford, L.; Eden, P.; Phalen, D.

10.1101/479360 — epidemiology — Posted on 2018-11-26

618 Black pod disease profile: Monitoring its outbreak in Southwest, Nigeria

Etaware, P. M.; Adedeji, A. R.

10.1101/479501 — plant biology — Posted on 2018-11-26

619 Immunological female role tested on artificial plugs in three scorpion species

Oviedo-Diego, M.; Mattoni, C.; Peretti, A. V.

10.1101/479485 — evolutionary biology — Posted on 2018-11-26

620 Comparisons among Vestibular Examinations and Symptoms of Vertigo in Sudden Sensorineural Hearing Loss Patients

Lim, K. H.; Jeong, Y. J.; Han, M. S.; Rah, Y. C.; Cha, J.; Choi, J.

10.1101/479352 — bioinformatics — Posted on 2018-11-26

621 Hippocampal connectivity with sensorimotor cortex during volitional finger movements. II. Spatial and temporal selectivity

Burman, D. D.

10.1101/479436 — neuroscience — Posted on 2018-11-26

622 Biospeckle laser digital image processing for quantitative and statistical evaluation of the activity of Ciprofloxacin on Escherichia coli K-12

Grassi, H. C.; Velasquez, A. d. V.; Belandria, O. M.; Lobo-Sulbaran, M. L.; Andrades-Grassi, J. E.; Cabrera, H.; Andrades, E. D. J.

10.1101/479345 — microbiology — Posted on 2018-11-26

623 Coverage, Opportunity and Challenges of expanded Program on Immunization among 12-23 Months old Children in Woldia Town, Northeast, Ethiopia, 2018.: mixed cross sectionalstudy.

Abebe, A. M.; Kassaw, M. W.; Birara, A.

10.1101/479311 — epidemiology — Posted on 2018-11-26

624 Migration of di-(2-ethylhexyl) phthalate from the plastic film into the air and vegetables in the greenhouses

fu, x.; Huang, B.

10.1101/479469 — ecology — Posted on 2018-11-26

625 Thermopneumatic suction integrated microfluidic blood analysis system

Yang, C.-H.; Hsieh, Y.-L.; Tsou, P.-H.; Li, B.-R.

10.1101/479386 — bioengineering — Posted on 2018-11-26

626 Development of the Brief Personal Values Inventory for sense of values in the Japanese general population

Ozawa, S.; Iijima, Y.; Ando, S.; Okada, N.; Kawashima, T.; Ohta, k.; Yamasaki, S.; Kasai, K.; Nishida, A.; Nakatani, H.; Koike, S.

10.1101/479337 — scientific communication and education — Posted on 2018-11-26

627 Homeostatic versus pathological functions of Dual Leucine Zipper Kinase in the adult mouse brain

Goodwani, S.; Hamby, M. E.; Buggia-Prevot, V.; Acton, P.; Fernandez, C.; Al-Ouran, R.; Jiang, Y.; Soth, M.; Jones, P.; Ray, W. J.

10.1101/479378 — neuroscience — Posted on 2018-11-26

628 Isolation and characterization of extracellular vesicles from Caenorhabditis elegans for multi-omic analysis.

Russell, J. C.; Merrihew, G. E.; Robbins, J. E.; Postupna, N.; Kim, T.-K.; Golubeva, A.; Noori, A.; Wang, K.; Keene, C. D.; MacCoss, M. J.; Kaeberlein, M.

10.1101/476226 — cell biology — Posted on 2018-11-25

629 Clustering-based optimization method of reference set selection for improved CNV callers performance

Kusmirek, W.; Szmurlo, A.; Wiewiorka, M.; Nowak, R.; Gambin, T.

10.1101/478313 — bioinformatics — Posted on 2018-11-25

630 Excitability changes in the motor cortex in preparation for self-paced and cue-guided movements: a transcranial magnetic stimulation study

Ibanez, J.; Hannah, R.; Rocchi, L.; Rothwell, J. C.

10.1101/470153 — neuroscience — Posted on 2018-11-25

631 Olanzapine: a full and potent agonist at the hM4D(Gi) DREADD amenable to clinical translation of chemogenetics

Weston, M.; Kaserer, T.; Carpenter, J. C.; Snowball, A.; Knauss, S.; Lignani, G.; Schorge, S.; Kullmann, D. M.; Lieb, A.

10.1101/477513 — neuroscience — Posted on 2018-11-25

632 RegTools: Integrated analysis of genomic and transcriptomic data for discovery of splicing variants in cancer

Feng, Y.-Y.; Ramu, A.; Cotto, K. C.; Skidmore, Z. L.; Kunisaki, J.; Conrad, D. F.; Lin, Y.; Chapman, W.; Uppaulri, R.; Govindan, R.; Griffith, O. L.; Griffith, M.

10.1101/436634 — bioinformatics — Posted on 2018-11-25

633 Lipid Lowering Oxopropanylindole Hydrazone Derivatives with Anti-oxidant and Anti-hyperglycemic Activity

Varshney, K.; Gupta, A. K.; Sonkar, R.; Varshney, S.; Mishra, A.; Bhatia, G.; Gaikwad, A.; Srivastava, A. K.; Saxena, M.; Jain, S.; Saxena, A.

10.1101/477315 — biochemistry — Posted on 2018-11-25

634 The transfer function of the rhesus macaque oculomotor system for small-amplitude slow motion trajectories

Skinner, J.; Buonocore, A.; Hafed, Z.

10.1101/359836 — neuroscience — Posted on 2018-11-25

635 Quantifying the potential for future gene therapy to lower lifetime risk of polygenic late-onset diseases

Oliynyk, R. T.

10.1101/390773 — genetics — Posted on 2018-11-25

636 TRPC3 is essential for functional heterogeneity of cerebellar Purkinje cells

Wu, B.; Blot, F. G. C.; Wong, A. B.; Osorio, C.; Adolfs, Y.; Pasterkamp, R. J.; Hartmann, J.; Becker, E. B. E.; Boele, H.-J.; De Zeeuw, C. I.; Schonewille, M.

10.1101/478446 — neuroscience — Posted on 2018-11-25

Oliynyk, R. T.

10.1101/349019 — bioinformatics — Posted on 2018-11-25

638 Excitability changes in the motor cortex in preparation for self-paced and cue-guided movements: a transcranial magnetic stimulation study

Ibanez, J.; Hannah, R.; Rocchi, L.; Rothwell, J. C.

10.1101/470153 — neuroscience — Posted on 2018-11-25

639 Polymorphic 30-nm Chromatin Fiber and Linking Number Paradox. Evidence for the Occurrence of Two Distinct Topoisomers.

Norouzi, D.; Zhurkin, V. B.

10.1101/478396 — molecular biology — Posted on 2018-11-25

640 Optimizing Disease Surveillance by Reporting on the Blockchain

Coelho, F. C.

10.1101/278473 — epidemiology — Posted on 2018-11-25

641 On the relationship between the rate of learning and retrieval-induced forgetting

Markoja, A.; Szollosi, A.; Racsmany, M.

10.1101/350959 — neuroscience — Posted on 2018-11-25

642 Automated Electrodes Detection during simultaneous EEG/fMRI

Fleury, M.; Barillot, C.; Mano, M.; Bannier, E.; Maurel, P.

10.1101/395806 — neuroscience — Posted on 2018-11-25

643 Generation of Cynomolgus Monkeys (Macaca fascicularis) Embryos with ICSI Based on the MII-Stage Oocytes Acquired by Personalized Superovulation Protocol

Ma, K.; Huang, Z.; Li, Y.; Jiang, Q.; Wang, Y.; Li, Q.

10.1101/475897 — developmental biology — Posted on 2018-11-25

644 Switch costs in inhibitory control and goal-directed behavior: A computational study of the antisaccade task

Aponte, E. A.; Stephan, K. E.; Heinzle, J.

10.1101/313643 — animal behavior and cognition — Posted on 2018-11-25

645 ParB dynamics and the critical role of the CTD in DNA condensation unveiled by combined force-fluorescence measurements

Madariaga-Marcos, J.; Pastrana, C. L.; Fisher, G. L. M.; Dillingham, M. S.; Moreno-Herrero, F.

10.1101/477836 — molecular biology — Posted on 2018-11-25

646 The mechanism of Ccr4-Not recruitment to specific mRNAs involves sequence-selective tethering by RNA-binding proteins

Webster, M. W.; Stowell, J. A. W.; Passmore, L. A.

10.1101/478008 — molecular biology — Posted on 2018-11-25

647 Gene knock out of honey bee trypanosomatid parasite, Lotmaria passim, by CRISPR/Cas9 system

Liu, Q.; Kadowaki, T.

10.1101/478198 — microbiology — Posted on 2018-11-25

648 Genome-wide association study reveals a dynamic role of common genetic variation in infant and early childhood growth

Helgeland, O.; Vaudel, M.; Juliusson, P.; Lingaas Holmen, O.; Juodakis, J.; Bacelis, J.; Jacobsson, B.; Lindekleiv, H.; Hveem, K.; Lie, R. T.; Knudsen, G. P.; Stoltenberg, C.; Magnus, P.; Sagen, J.; Molven, A.; Johansson, S.; Njolstad, P. R.

10.1101/478255 — genetics — Posted on 2018-11-25

649 Cyfip1 haploinsufficiency is associated with white matter changes, myelin thinning, reduction of mature oligodendrocytes and behavioural inflexibility

Silva, A. I.; Haddon, J. E.; Trent, S.; Syed, Y. A.; Lin, T.-C. E.; Patel, Y.; Carter, J.; Haan, N.; Honey, R. C.; Humby, T.; Assaf, Y.; Linden, D. E. J.; Owen, M. J.; Hall, J.; Wilkinson, L.

10.1101/477786 — neuroscience — Posted on 2018-11-25

650 Topological gene-expression networks recapitulate brain anatomy and function

Patania, A.; Selvaggi, P.; Veronese, M.; DiPasquale, O.; Expert, P.; Petri, G.

10.1101/476382 — neuroscience — Posted on 2018-11-25

651 Powerful statistical method to detect disease associated genes using publicly available GWAS summary data

Zhang, J.; Wu, B.; Guo, B.; Zhao, Z.; Guo, X.

10.1101/478321 — genetics — Posted on 2018-11-25

652 Clustering-based optimization method of reference set selection for improved CNV callers performance

Kusmirek, W.; Szmurlo, A.; Wiewiorka, M.; Nowak, R.; Gambin, T.

10.1101/478313 — bioinformatics — Posted on 2018-11-25

653 Topological phase transitions in functional brain networks

Santos, F. A. N.; Raposo, E. P.; Coutinho-Filho, M. D.; Copelli, M.; Stam, C. J.; Douw, L.

10.1101/469478 — neuroscience — Posted on 2018-11-24

654 Multi-sample SPIM image acquisition, processing and analysis of vascular growth in zebrafish

Daetwyler, S.; Günther, U.; Modes, C. D.; Harrington, K.; Huisken, J.

10.1101/478149 — developmental biology — Posted on 2018-11-24

655 The Set1 complex is dimeric and acts with Jhd2 demethylation to convey symmetrical H3K4 trimethylation

Choudhury, R.; Singh, S.; Arumugam, S.; Roguev, A.; Stewart, A. F.

10.1101/477646 — cell biology — Posted on 2018-11-24

656 Hidden patterns of codon usage bias across kingdoms

Deng, Y.; Kalfon, J.; Chu, D.; von der Haar, T.

10.1101/478016 — bioinformatics — Posted on 2018-11-24

657 DEAH-box helicase 37 (DHX37) defects are a novel molecular etiology of 46,XY gonadal dysgenesis spectrum

da Silva, T. E.; Gomes, N. L.; Lerario, A. M.; Keegan, C. E.; Nishi, M. Y. Y.; Carvalho, F. M.; Vilain, E.; Barseghyan, H.; Martinez-Aguayo, A.; Forclaz, M. V.; Papazian, R.; Carvalho, L. R.; Costa, E. F.; Mendonca, B. B.; Domenice, S.

10.1101/477992 — developmental biology — Posted on 2018-11-24

658 Live-cell single RNA imaging reveals bursts of translational frameshifting

Lyon, K. R.; Aguilera, L. U.; Morisaki, T.; Munsky, B.; Stasevich, T. J.

10.1101/478040 — biochemistry — Posted on 2018-11-24

659 Detailed analysis of chick optic fissure closure reveals Netrin-1 as an essential and conserved mediator of epithelial fusion during vertebrate embryogenesis.

Hardy, H.; Prendergast, J.; Patel, A.; Dutta, S.; Trejo-Reveles, V.; Kroeger, H.; Yung, A.; Goodrich, L. V.; Brooks, B. P.; Sowden, J.; Rainger, J.

10.1101/477729 — developmental biology — Posted on 2018-11-24

660 Transcriptome landscape of the developing olive fruit fly embryo delineated by Oxford Nanopore long-read RNA-Seq

Bayega, A.; Oikonomopoulos, S.; Zorbas, E.; Wang, Y. C.; Gregoriou, M.-E.; Tsoumani, K. T.; Mathiopoulos, K. D.; Ragoussis, J.

10.1101/478172 — developmental biology — Posted on 2018-11-24

661 Identification of slow-cycling germline stem cells and their regulation by PLZF

Braun, R. E.; Sharma, M.; Srivastava, A.; Fairfield, H. E.; Bergstrom, D.; Flynn, W. F.

10.1101/477604 — developmental biology — Posted on 2018-11-24

662 Machine learning enables detection of early-stage colorectal cancer by whole-genome sequencing of plasma cell-free DNA

Wan, N.; Weinberg, D.; Liu, T.-y.; Niehaus, K.; Delubac, D.; Kannan, A.; White, B.; Ariazi, E.; Bailey, M.; Bertin, M.; Boley, N.; Bowen, D.; Cregg, J.; Drake, A.; Ennis, R.; Fransen, S.; Gafni, E.; Hansen, L.; Liu, Y.; Otte, G. L.; Pecson, J.; Rice, B.; Sanderson, G. E.; Sharma, A.; St. John, J.; Tang, C.; Tzou, A.; Young, L.; Putcha, G.; Haque, I. S.

10.1101/478065 — cancer biology — Posted on 2018-11-24

663 Lipid Lowering Oxopropanylindole Hydrazone Derivatives with Antioxidant and Antihyperglycemic Activity

Varshney, K.; Gupta, A. K.; Sonkar, R.; Varshney, S.; Mishra, A.; Bhatia, G.; Gaikwad, A.; Srivastava, A. K.; Saxena, M.; Jain, S.; Saxena, A.

10.1101/477315 — biochemistry — Posted on 2018-11-24

664 E-cadherin endocytosis is modulated by p120-catenin through the opposing actions of RhoA and Arf1

Greig, J.; Bulgakova, N. A.

10.1101/477760 — cell biology — Posted on 2018-11-24

665 Age-dependent deterioration of nuclear pore assembly in mitotic cells decreases transport dynamics

Rempel, I. L.; Crane, M. M.; Mishra, A.; Jansen, D. P.; Janssens, G.; Popken, P.; Kaeberlein, M.; van der Giessen, E.; Onck, P.; Steen, A.; Veenhoff, L. M.

10.1101/477802 — cell biology — Posted on 2018-11-24

666 Genotyping-by-sequencing and microarrays are complementary for detecting quantitative trait loci by tagging different haplotypes in association studies

Negro, S. S.; Millet, E.; Madur, D.; Bauland, C.; Combes, V.; Welcker, C.; Tardieu, F.; Charcosset, A.; Nicolas, S. D.

10.1101/476598 — genomics — Posted on 2018-11-24

667 Multi-color single molecule imaging uncovers extensive heterogeneity in mRNA decoding

Boersma, S.; Khuperkar, D.; Verhagen, B. M. P.; Sonneveld, S.; Grimm, J. B.; Lavis, L. D.; Tanenbaum, M. E.

10.1101/477661 — cell biology — Posted on 2018-11-24

668 Reproducing Transformation of Indolent B-cell Lymphoma by T-cell Immunosuppression of L.CD40 Mice.

Vincent-Fabert, C.; Saintamand, A.; David, A.; Alizadeh, M.; Boyer, F.; Arnaud, N.; Zimber-Strobl, U.; Feuillard, J.; Faumont, N.

10.1101/477273 — cancer biology — Posted on 2018-11-24

669 D-GPM: a deep learning method for gene promoter methylation inference

Pan, X.; Liu, B.; Wen, X.; Liu, Y.; Zhang, X.; Li, S.

10.1101/438218 — bioinformatics — Posted on 2018-11-24

670 Novel autoregulatory cases of alternative splicing coupled with nonsense-mediated mRNA decay

Pervouchine, D.; Popov, I.; Berry, A.; Borsari, B.; Frankish, A.; Guigo, R.

10.1101/464404 — bioinformatics — Posted on 2018-11-24

671 Functional dissection of the ARGONAUTE7 promoter

Hoyer, J. S.; Pruneda-Paz, J. L.; Breton, G.; Hassert, M. A.; Holcomb, E. E.; Fowler, H.; Bauer, K. M.; Mreen, J.; Kay, S. A.; Carrington, J. C.

10.1101/392910 — plant biology — Posted on 2018-11-24

672 Integrative analysis of rare variants and pathway information shows convergent results between immune pathways, drug targets and epilepsy genes

Nguyen, H. T.; Dobbyn, A.; Charney, A.; Bryois, J.; Kim, A.; Skene, N. G.; Huckins, L. M.; Wang, W.; Ruderfer, D. M.; Xu, X.; Fromer, M.; Purcell, S. M.; Verhage, M.; Smit, A. B.; Hjerling-Leffler, J.; Lage, K.; Buxbaum, J.; Pinto, D.; He, X.; Sullivan, P. F.; Stahl, E. A.

10.1101/410100 — genomics — Posted on 2018-11-24

673 Dietary folic acid increases neurogenesis in the ventral hippocampus of adult female rats

Qiu, W.; Gobinath, A. R.; Lieblich, S. E.; Austin, J.; Galea, L.

10.1101/477448 — neuroscience — Posted on 2018-11-24

674 Biophysics and population size constrains speciation in an evolutionary model of developmental system drift

Khatri, B. S.; Goldstein, R.

10.1101/123265 — evolutionary biology — Posted on 2018-11-24

675 Iodine-enhanced micro-CT imaging of soft tissue on the example of peripheral nerve regeneration

Heimel, P.; Swiadek, N. V.; Slezak, P.; Kerbl, M.; Nuernberger, S.; Redl, H.; Teuschl, A. H.; Hercher, D.

10.1101/477539 — neuroscience — Posted on 2018-11-24

676 Strong preference for autaptic self-connectivity of neocortical PV interneurons entrains them to γ-oscillations

Deleuze, C.; Bhumbra, G. S.; Pazienti, A.; Mailhes, C.; Aguirre, A.; Beato, M.; Bacci, A.

10.1101/477554 — neuroscience — Posted on 2018-11-24

677 Predict future learning accuracy by the structural properties of the brain, an in vivo longitudinal MRI study in songbirds

Hamaide, J.; Lukacova, K.; Verhoye, M.; Van der Linden, A.

10.1101/477679 — neuroscience — Posted on 2018-11-24

678 Dissociable Neural Correlates of Uncertainty Underlie Different Exploration Strategies

Tomov, M.; Truong, V.; Hundia, R.; Gershman, S.

10.1101/478131 — neuroscience — Posted on 2018-11-24

679 Landscape of RNA editing reveals new insights into the dynamic gene regulation of spermatogenesis based on integrated RNA-Seq

Wang, X.; Zhu, Z.; Wu, X.; Li, H.; Li, T.; Li, Q.; Zhang, P.; Li, L.; Che, D.; Xiao, X.; Hua, J.; Liao, M.

10.1101/478206 — developmental biology — Posted on 2018-11-24

680 Olanzapine: a full and potent agonist at the hM4D(Gi) DREADD amenable to clinical translation of chemogenetics

Weston, M.; Kaserer, T.; Carpenter, J. C.; Snowball, A.; Knauss, S.; Lignani, G.; Schorge, S.; Kullmann, D. M.; Lieb, A.

10.1101/477513 — neuroscience — Posted on 2018-11-24

681 Parallel Distributed Networks Resolved at High Resolution Reveal Close Juxtaposition of Distinct Regions

Braga, R. M.; Van Dijk, K. R. A.; Polimeni, J. R.; Eldaief, M. C.; Buckner, R. L.

10.1101/475806 — neuroscience — Posted on 2018-11-24

682 MR-TRYX: Exploiting horizontal pleiotropy to infer novel causal pathways

Cho, Y.; Haycock, P. C.; Gaunt, T. R.; Zheng, J.; Morris, A. P.; Davey Smith, G.; Hemani, G.

10.1101/476085 — bioinformatics — Posted on 2018-11-24

683 Risks in signal processing pipelines influencing the estimation of phase dependency for EEG-TMS

Guggenberger, R.; Scherer, M.; Gharabaghi, A.

10.1101/477166 — neuroscience — Posted on 2018-11-24

684 Entorhinal neurons exhibit cue locking in rodent VR

Casali, G.; Shipley, S.; Dowell, C.; Hayman, R.; Barry, C.

10.1101/477620 — neuroscience — Posted on 2018-11-24

685 Wheel-running exercise before and during gestation against acute and sensitized cocaine psychomotor-activation in offspring

Lespine, L.-F.; Plenevaux, A.; Tirelli, E.

10.1101/477505 — neuroscience — Posted on 2018-11-24

686 Diffusion MRI Indices and their Relation to Cognitive Impairment in Brain Aging: The updated multi-protocol approach in ADNI3

Zavaliangos-Petropulu, A.; Nir, T. M.; Thomopoulos, S. I.; Reid, R. I.; Bernstein, M. A.; Borowski, B.; Jack, C. R.; Weiner, M. W.; Jahanshad, N.; Thompson, P. M.

10.1101/476721 — neuroscience — Posted on 2018-11-24

687 Characterization of functional diversity of the human brain based on intrinsic connectivity networks

Chu, C.; Fan, L.; Wu, D.; Jiang, T.

10.1101/475855 — neuroscience — Posted on 2018-11-24

688 Word meanings and sentence structure recruit the same set of fronto-temporal regions during comprehension

Fedorenko, E.; Mineroff, Z.; Siegelman, M.; Blank, I.

10.1101/477851 — neuroscience — Posted on 2018-11-24

689 Reciprocal cybrids reveal how organellar genomes affect plant phenotypes

Flood, P. J.; Theeuwen, T. P. J. M.; Schneeberger, K.; Keizer, P.; Kruijer, W.; Severing, E.; Kouklas, E.; Hageman, J. A.; Becker, F. F. M.; Schnabel, S. K. K.; Willems, L.; Ligterink, W.; van Arkel, J.; Mumm, R.; Gualberto, J. M.; Savage, L.; Kramer, D. M.; Keurentjes, J. J. B.; van Eeuwijk, F.; Koornneef, M.; Harbinson, J.; Aarts, M. G. M.; Wijnker, E.

10.1101/477687 — genetics — Posted on 2018-11-24

690 Extending long-range phasing and haplotype library imputation algorithms to very large and heterogeneous datasets

Money, D.; Wilson, D.; Jenko, J.; Gorjanc, G.; Hickey, J.

10.1101/477398 — bioinformatics — Posted on 2018-11-24

691 Object visibility, not energy expenditure, accounts for spatial biases in human grasp selection

Maiello, G.; Paulun, V. C.; Klein, L. K.; Fleming, R. W.

10.1101/476101 — neuroscience — Posted on 2018-11-24

692 EEG-based detection of the attended speaker and the locus of auditory attention with convolutional neural networks

Deckers, L.; Das, N.; Hossein Ansari, A.; Bertrand, A.; Francart, T.

10.1101/475673 — neuroscience — Posted on 2018-11-24

693 Mouse Xenograft Model of Corticospinal Tract by Delayed Transplantation of Olfactory Ensheating Cells

Naghynajadfard, M.; Li, Y.

10.1101/477521 — neuroscience — Posted on 2018-11-24

694 Pervasive positive linkage between bacterial social traits suggests the predominance of competitive interactions in natural Pseudomonas communities

Kramer, J.; Lopez Carrasco, M. A.; Kümmerli, R.

10.1101/477471 — microbiology — Posted on 2018-11-24

695 The Fate of Glutamine in Human Metabolism. Comparison with Glucose

MAZAT, J.-P.; RANSAC, S.

10.1101/477224 — systems biology — Posted on 2018-11-24

696 The Biology of Risk-On. Decreasing Inflammatory and Stress Responses on a London Trading Floor

Xie, N.; Page, L.; Granger, D.; Coates, J. M.

10.1101/473157 — physiology — Posted on 2018-11-24

697 MORPhA Scale: behavioral and electroencephalographic validation of a rodent anesthesia scale

Esteves, M.; Almeida, A. M.; Silva, J.; Moreira, P. S.; Carvalho, E.; Pego, J. M.; Almeida, A.; Sotiropoulos, I.; Sousa, N.; Leite-Almeida, H.

10.1101/475921 — neuroscience — Posted on 2018-11-24

698 Using DeepLabCut for 3D markerless pose estimation across species and behaviors

Nath, T.; Mathis, A.; Chen, A. C.; Patel, A.; Bethge, M.; Mathis, M. W.

10.1101/476531 — neuroscience — Posted on 2018-11-24

699 Growth disrupting mutations in epigenetic regulatory molecules are associated with abnormalities of epigenetic aging

Jeffries, A. R.; Maroofian, R.; Salter, C. G.; Chioza, B. A.; Cross, H. E.; Patton, M. A.; Temple, I. K.; Mackay, D.; Rezwan, F. I.; Aksglaede, L.; Baralle, D.; Dabir, T.; Hunter, M. F.; Kamath, A.; Kumar, A.; Newbury-Ecob, R.; Selicorni, A.; Springer, A.; van Maldergem, L.; Varghese, V.; Yachelevich, N.; Tatton-Brown, K.; Mill, J.; Crosby, A. H.; Baple, E.

10.1101/477356 — genetics — Posted on 2018-11-24

700 Bayesian meta-analysis across genome-wide association studies of diverse phenotypes

Trochet, H.; Pirinen, M.; Band, G.; Jostins, L.; Wellcome Trust Case-Control Consortium 2, ; McVean, G.; Spencer, C. C. A.

10.1101/477828 — genetics — Posted on 2018-11-24

701 Worldwide phylogeography and history of wheat genetic diversity

Balfourier, F.; Bouchet, S.; Robert, S.; De Oliveira, R.; Rimbert, H.; Kitt, J.; Choulet, F.; International Wheat Genome Sequencing Consortium, ; BreedWheat Consortium, ; Paux, E.

10.1101/477455 — genetics — Posted on 2018-11-24

702 Systematic Allelic Analysis Defines the Interplay of Key Pathways in X Chromosome Inactivation

Nesterova, T. B.; Wei, G.; Coker, H.; Pintacuda, G.; Bowness, J. S.; Zhang, T.; Almeida, M.; Bloechl, B.; Moindrot, B.; Carter, E. J.; Alvarez Rodrigo, I.; Pan, Q.; Bi, Y.; Song, C.-X.; Brockdorff, N.

10.1101/477232 — genetics — Posted on 2018-11-24

703 Unhealthy Yet Avoidable - How Cognitive Bias Modification Alters Behavioral And Brain Responses To Food Cues In Obesity

Mehl, N.; Morys, F.; Villringer, A.; Horstmann, A.

10.1101/475020 — neuroscience — Posted on 2018-11-24

704 Two linked loci under mutation-selection balance and Muller’s ratchet

Khudiakova, K. A.; Neretina, T. Y.; Kondrashov, A. S.

10.1101/477489 — evolutionary biology — Posted on 2018-11-24

705 Reproduction has different costs for immunity and parasitism in a wild mammal

Albery, G.; Watt, K.; Keith, R.; Morris, S.; Morris, A.; Kenyon, F.; Nussey, D. H.; Pemberton, J. M.

10.1101/472597 — ecology — Posted on 2018-11-24

706 Fgf3 is crucial for the generation of monoaminergic cerebrospinal fluid contacting cells in zebrafish

Reuter, I.; Jaeckels, J.; Kneitz, S.; Kuper, J.; Lesch, K.-P.; Lillesaar, C.

10.1101/477323 — developmental biology — Posted on 2018-11-24

707 A genetically encoded probe for imaging HA-tagged protein translation, localization, and dynamics in living cells and animals

Zhao, N.; Kamijo, K.; Fox, P.; Oda, H.; Morisaki, T.; Sato, Y.; Kimura, H.; Stasevich, T. J.

10.1101/474668 — cell biology — Posted on 2018-11-24

708 Analysis of structural variants in four African cichlids highlights an association with developmental and immune related genes

Penso Dolfin, L.; Man, A.; Haerty, W.; Di-Palma, F.

10.1101/473710 — evolutionary biology — Posted on 2018-11-24

709 Hierarchical multiscale simulation of DNA condensation

Sun, T.; Mirzoev, A.; Minhas, V.; Korolev, N.; Lyubartsev, A. P.; Nordenskioeld, L.

10.1101/375626 — biophysics — Posted on 2018-11-23

710 Assessing the performance of real-time epidemic forecasts: A case study of Ebola in the Western Area Region of Sierra Leone, 2014-15

Funk, S.; Camacho, A.; Kucharski, A. J.; Lowe, R.; Eggo, R. M.; Edmunds, W. J.

10.1101/177451 — epidemiology — Posted on 2018-11-23

711 The BTB-ZF transcription factor Tramtrack 69 shapes neural cell lineages by coordinating cell proliferation and cell fate

Simon, F.; Ramat, A.; Louvet-Vallee, S.; Lacoste, J.; Burg, A.; Audibert, A.; Gho, M.

10.1101/338285 — developmental biology — Posted on 2018-11-23

712 Multi-omics profiling establishes the polypharmacology of FDA Approved CDK4/6 inhibitors and its impact on drug response

Hafner, M.; Mills, C. E.; Subramanian, K.; Chen, C.; Chung, M.; Boswell, S. A.; Everley, R. A.; Liu, C.; Walmsley, C. S.; Juric, D.; Sorger, P.

10.1101/211680 — cancer biology — Posted on 2018-11-23

713 Towards multi-drug adaptive therapy

West, J.; You, L.; Brown, J.; Newton, P. K.; Anderson, A. R.

10.1101/476507 — cancer biology — Posted on 2018-11-23

714 The strength of protein-protein interactions controls the information capacity and dynamical response of signaling networks

Wang, C.-H.; Bashor, C. J.; Mehta, P.

10.1101/469197 — systems biology — Posted on 2018-11-23

715 Association between Apolipoprotein E genotype and the gut microbiome composition in humans and mice

Tran, T. T. T.; Corsini, S.; Kellingray, L.; Hegarty, C.; Le Gall, G.; Narbad, A.; Müller, M.; Tejera, N.; O'Toole, P. W.; Minihane, A.-M.; Vauzour, D.

10.1101/473694 — genomics — Posted on 2018-11-23

716 Interpreting coronary artery disease risk through gene-environment interactions in gene regulation

Findley, A. S.; Richards, A. L.; Petrini, C.; Alazizi, A.; Doman, E.; Shanku, A. G.; Davis, G. O.; Hauff, N. J.; Sorokin, Y.; Wen, X.; Pique-Regi, R.; Luca, F.

10.1101/475483 — genomics — Posted on 2018-11-23

717 BioKEEN: A library for learning and evaluating biological knowledge graph embeddings

Ali, M.; Hoyt, C. T.; Domingo-Fernandez, D.; Lehmann, J.; Jabeen, H.

10.1101/475202 — bioinformatics — Posted on 2018-11-23

718 Explorations with conditioned stimuli in autoshaping procedures

Smedley, E. B.; Nehrbas, J. F.; Smith, K. S.

10.1101/475541 — animal behavior and cognition — Posted on 2018-11-23

719 Functional connectivity with short-term dynamics explains diverse patterns of excitatory spike transmission in vivo

Ghanbari, A.; Ren, N.; Keine, C.; Stoelzel, C.; Englitz, B.; Swadlow, H.; Stevenson, I.

10.1101/475178 — neuroscience — Posted on 2018-11-23

720 Effect of vaccinating health care workers to control Ebola virus disease: a modelling analysis of outbreak data

Robert, A.; Camacho, A.; Edmunds, W. J.; Baguelin, M.; Muyembe Tamfum, J.-J.; Rosello, A.; Keita, S.; Eggo, R. M.

10.1101/113506 — epidemiology — Posted on 2018-11-23

721 APPLES: Fast Distance-based Phylogenetic Placement

Balaban, M.; Sarmashghi, S.; Mirarab, S.

10.1101/475566 — bioinformatics — Posted on 2018-11-23

722 Neural Signatures of Reward and Sensory Prediction Error in Motor Learning

Palidis, D. J.; Cashaback, J.; Gribble, P.

10.1101/262576 — neuroscience — Posted on 2018-11-23

723 Towards multi-drug adaptive therapy

West, J.; You, L.; Brown, J.; Newton, P. K.; Anderson, A. R.

10.1101/476507 — cancer biology — Posted on 2018-11-23

724 sierra-local: A lightweight standalone application for secure HIV-1 drug resistance prediction

Ho, J. C.; Ng, G. T.; Renaud, M.; Poon, A. F.

10.1101/393207 — bioinformatics — Posted on 2018-11-23

725 Optimized fragmentation improves the identification of peptides cross-linked using MS-cleavable reagents

Stieger, C. E.; Doppler, P.; Mechtler, K.

10.1101/476051 — biochemistry — Posted on 2018-11-23

726 Reconciling in vitro and in vivo activities of engineered, LacI-based repressor proteins: Contributions of DNA looping and operator sequence variation

Tungtur, S.; Schwingen, K. M.; Riepe, J. J.; Weeramange, C. J.; Swint-Kruse, L.

10.1101/477893 — biochemistry — Posted on 2018-11-23

727 Relating excitatory and inhibitory neurochemicals to visual perception: a magnetic resonance study of occipital cortex between migraine events.

Chan, Y. M.; Pitchaimuthu, K.; Wu, Q.-Z.; Carter, O. L.; Egan, G.; Badcock, D.; McKendrick, A. M.

10.1101/477935 — neuroscience — Posted on 2018-11-23

728 Viral characteristics associated with sustenance of elite neutralizing activity in chronically HIV-1C infected monozygotic pediatric twins

Mishra, N.; Makhdoomi, M. A.; Sharma, S.; Kumar, S.; Kumar, D.; Chawla, H.; Singh, R.; Kanga, U.; Das, B. K.; Lodha, R.; Kabra, S.; Luthra, K.

10.1101/475822 — immunology — Posted on 2018-11-23

729 ProtMiscuity: a database of promiscuous proteins

Velez Rueda, A. J.; Palopoli, N.; Zacarias, M.; Parisi, G.

10.1101/477380 — bioinformatics — Posted on 2018-11-23

730 Multi-level Approximate Bayesian Computation

Lester, C.

10.1101/475640 — bioinformatics — Posted on 2018-11-23

731 Towards understanding biology of leydiogioma. G protein-coupled receptor and peroxisome proliferator-activated receptor crosstalk regulates lipid metabolism and steroidogenesis in Leydig cell tumors

Kotula-Balak, M.; Gorowska-Wojtowicz, E.; Milon, A.; Pawlicki, P.; Kaminska, A.; Pardyak, L.; Tworzydlo, W.; Plachno, B.; Hejmej, A.; Wolski, J. K.

10.1101/477901 — physiology — Posted on 2018-11-23

732 High-resolution mass spectrometry-based non-targeted metabolomic discovery of disease and glucocorticoid biomarkers in an animal model of muscular dystrophy

Thangarajh, M.; Boca, S. M.; Zhang, A.; Gill, K.; Ressom, H.; Li, Z.; Hoffman, E. P.; Nagaraju, K.; Hathout, Y.

10.1101/475590 — bioinformatics — Posted on 2018-11-23

733 Proteomic analysis of the Pseudomonas aeruginosa iron starvation response reveals PrrF sRNA-dependent regulation of amino acid metabolism, iron-sulfur cluster biogenesis, motility, and zinc homeostasis

Nelson, C. E.; Huang, W.; Brewer, L. K.; Nguyen, A. T.; Kane, M. A.; Wilks, A.; Oglesby-Sherrouse, A. G.

10.1101/477984 — microbiology — Posted on 2018-11-23

734 BK channels have opposite effects on sodium versus calcium-mediated action potentials in endocrine pituitary cells.

Halnes, G.; Tennoe, S.; Haug, T. M.; Einevoll, G. T.; Weltzien, F.-A.; Hodne, K.

10.1101/477976 — cell biology — Posted on 2018-11-23

735 A mathematical model of calcium dynamics: Obesity and mitochondria-associated ER membranes

Han, J. M.; Periwal, V.

10.1101/477968 — cell biology — Posted on 2018-11-23

736 A general method to quantify ligand-driven oligomerization using single- or two-photon excitation microscopy

Stoneman, M. R.; Biener, G.; Ward, R. J.; Pediani, J. D.; Badu, D. N.; Popa, I. V.; Milligan, G.; Raicu, V.

10.1101/477307 — biophysics — Posted on 2018-11-23

737 Differential physiological role of BIN1 isoforms in skeletal muscle development, function and regeneration

Prokic, I.; Cowling, B. S.; Kutchukian, C.; Kretz, C.; Tasfaout, H.; Hergueux, J.; Wendling, O.; Ferry, A.; Toussaint, A.; Gavriilidis, C.; Nattarayan, V.; Koch, C.; Lainne, J.; Combe, R.; Tiret, L.; Jacquemond, V.; Pilot-Storck, F.; Laporte, J.

10.1101/477950 — pathology — Posted on 2018-11-23

738 A nonsense mutant of the hepatitis B virus large S protein antagonizes multiple tumor suppressor pathways through c-Jun activation domain-binding protein1

Matsuura, I.; Chiu, S.-Y.; Chung, H.-J.; Chen, Y.-T.; Huang, M.-S.; Huang, C.-C.; Huang, S.-F.

10.1101/477919 — molecular biology — Posted on 2018-11-23

739 DeepCapTail: A Deep Learning Framework to Predict Capsid and Tail Proteins of Phage Genomes

Abid, D.; Zhang, L.

10.1101/477885 — bioinformatics — Posted on 2018-11-23

740 Gentamicin B1 is not a minor gentamicin component with major nonsense mutation suppression activity

Baradaran-Heravi, A.; Williams, D. E.; Powell, D. A.; Balgi, A. D.; Andersen, R. J.; Roberge, M.

10.1101/476564 — biochemistry — Posted on 2018-11-23

741 Regional reinfection by Dengue: a network approach using data from Mexico

Nunez-Lopez, M.; Alarcon-Ramos, L.; Velasco-Hernandez, J. X.

10.1101/475137 — epidemiology — Posted on 2018-11-23

742 Antiretroviral therapy is the principal cause of tuberculosis decline in southern and eastern Africa

Dye, C.; Williams, B. G.

10.1101/477158 — epidemiology — Posted on 2018-11-23

743 RESISTANCE AT NO COST: THE TRANSMISSIBILITY AND POTENTIAL FOR DISEASE PROGRESSION OF DRUG-RESISTANT M. TUBERCULOSIS

Becerra, M. C.; Huang, C.-C.; Lecca, L.; Bayona, J.; Contreras, C.; Calderon, R.; Yataco, R.; Galea, J.; Zhang, Z.; Atwook, S.; Cohen, T.; Mitnick, C. D.; Farmer, P.; Murray, M.

10.1101/475764 — epidemiology — Posted on 2018-11-23

744 Accounting for healthcare-seeking behaviours and testing practices in real-time influenza forecasts

Moss, R.; Zarebski, A. E.; Carlson, S. J.; McCaw, J. M.

10.1101/475756 — epidemiology — Posted on 2018-11-23

745 Automated optimal parameters for T-distributed stochastic neighbor embedding improve visualization and allow analysis of large datasets

Belkina, A. C.; Ciccolella, C. O.; Anno, R.; Spidlen, J.; Halpert, R.; Snyder-Cappione, J.

10.1101/451690 — bioinformatics — Posted on 2018-11-23

746 Transcriptomic response to divergent selection for flowering time in maize reveals convergence and key players of the underlying gene regulatory network

Tenaillon, M. I.; Seddiki, K.; Mollion, M.; Le Guilloux, M.; Marchadier, E.; Ressayre, A.; Dillmann, C.

10.1101/461947 — plant biology — Posted on 2018-11-23

747 Pupillary dilations of mice performing a vibrotactile discrimination task reflect task engagement and response confidence.

Ganea, D. A.; Bexter, A.; Guenther, M.; Garderes, P. M.; Kampa, B. M.; Haiss, F.

10.1101/444919 — neuroscience — Posted on 2018-11-23

748 The key protein of endosomal mRNP transport Rrm4 binds translational landmark sites of cargo mRNAs

Olgeiser, L.; Haag, C.; Boerner, S.; Ule, J.; Busch, A.; Koepke, J.; Konig, J.; Feldbrugge, M.; Zarnack, K.

10.1101/418079 — cell biology — Posted on 2018-11-23

749 The Aquilegia genome reveals a hybrid origin of core eudicots

Aköz, G.; Nordborg, M.

10.1101/407973 — genomics — Posted on 2018-11-23

750 Genomic data provides new insights on the demographic history and the extent of recent material transfers in Norway spruce

Chen, J.; li, l.; Milesi, P.; Jansson, G.; Berlin, M.; Karlsson, B.; Aleksic, J.; Vendramin, G. G.; Lascoux, M.

10.1101/402016 — evolutionary biology — Posted on 2018-11-23

751 Inferring Tumour Proliferative Organisation from Phylogenetic Tree Measures in a Computational Model

Scott, J. G.; Anderson, A. R.; Maini, P. K.; Fletcher, A. G.

10.1101/334946 — cancer biology — Posted on 2018-11-23

752 Aerodigestive sampling reveals altered microbial exchange between lung, oropharyngeal, and gastric microbiomes in children with impaired swallow function

Duvallet, C.; Larson, K.; Snapper, S.; Iosim, S.; Lee, A.; Freer, K.; May, K.; Alm, E.; Rosen, R.

10.1101/476580 — microbiology — Posted on 2018-11-23

753 Neuromodulation leads to a burst-tonic switch in a subset of VIP neurons in mouse primary somatosensory (barrel) cortex

Proenneke, A.; Witte, M.; Moeck, M.; Staiger, J. F.

10.1101/475061 — neuroscience — Posted on 2018-11-23

754 Campylobacter jejuni transmission and colonisation in broiler chickens is inhibited by Faecal Microbiota Transplantation.

Gilroy, R.; Chaloner, G.; Wedley, A.; Lacharme-Lora, L.; Jopson, S.; Wigley, P.

10.1101/476119 — microbiology — Posted on 2018-11-23

755 Riding the wave of genomics, to investigate aquatic coliphage diversity and activity

Michniewski, S.; Redgwell, T.; Grigonyte, A.; Rihtman, B.; Aguilo-Ferretjans, M.; Christie-Oleza, J. A.; Jameson, E.; Scanlan, D.; Millard, A.

10.1101/476168 — microbiology — Posted on 2018-11-23

756 Refinement of metabolite detection in cystic fibrosis sputum reveals heme negatively correlates with lung function

Glasser, N. R.; Hunter, R. C.; Liou, T. G.; Newman, D. K. K.; Mountain West CF Consortium Investigators,

10.1101/475525 — microbiology — Posted on 2018-11-23

757 Methamphetamine Administration Increases Proceptive Behavior by Activating Src Kinase and Upregulating Progesterone Receptor in the Medial Amygdala

Williams, K. M.; Rudzinskas, S. A.; Mong, J. A.

10.1101/475616 — neuroscience — Posted on 2018-11-23

758 Analysis of Single Nucleotide Polymorphisms in human Voltage-Gated Ion Channels

Nastou, K. C.; Batskinis, M. A.; Litou, Z. I.; Hamodrakas, S. J.; Iconomidou, V. A.

10.1101/476572 — bioinformatics — Posted on 2018-11-23

759 TFound: A Software to Map Cis-Regulatory Elements in Yeast

Gomes-Silva, A.; Silva-Rocha, R.

10.1101/474957 — synthetic biology — Posted on 2018-11-23

760 Evolution of international collaborative research efforts to develop non-Cochrane systematic reviews

Viguera-Guerra, I.; Ruano, J.; Aguilar-Luque, M.; Gay-Mimbrera, J.; Montilla, A.; Fernandez-Rueda, J.-L.; Fernandez-Chaichio, J.; Sanz-Cabanillas, J.-L.; Gomez-Arias, P.-J.; Velez Garcia-Nieto, A.; Gomez-Garcia, F.; Isla-Tejera, B.

10.1101/467795 — scientific communication and education — Posted on 2018-11-23

761 Watching antibiotics in action: Exploiting time-lapse microfluidic microscopy as a tool for target-drug interaction studies in Mycobacterium

Trojanowski, D.; Kolodziej, M.; Holowka, J.; Mueller, R.; Zakrzewska-Czerwinska, J.

10.1101/477141 — microbiology — Posted on 2018-11-23

762 Gene erosion and genome expansion in a group of highly host-specialized fungal phytopathogens

Frantzeskakis, L.; Nemeth, M. Z.; Barsoum, M.; Kusch, S.; Kiss, L.; Takamatsu, S.; Panstruga, R.

10.1101/476267 — genomics — Posted on 2018-11-23

763 Macarthurs 1955 Stability Function is Related to Formal Dynamic Measures of Food Web Stability

Keegan, S. P.; Townsend, S. E.; Haydon, D. T.

10.1101/477406 — ecology — Posted on 2018-11-23

764 Force inference predicts local and tissue-scale stress patterns in epithelia

Kong, W.; Loison, O.; Chavadimane Shivakumar, P.; Collinet, C.; Lenne, P.-F.; Clement, R.

10.1101/475012 — biophysics — Posted on 2018-11-23

765 ExtendAlign: a computational algorithm for delivering multiple global alignment results originated from local alignments.

Flores-Torres, M.; Gomez-Romero, L.; Hasse-Hernandez, J. I.; Aguilar-Ordonez, I.; Tovar, H.; Avendano-Vazquez, S. E.; Flores-Jasso, C. F.

10.1101/475707 — bioinformatics — Posted on 2018-11-23

766 NGOMICS-WF, a Bioinformatic Workflow Tool for Batch Omics Data Analysis

Li, W.

10.1101/475699 — bioinformatics — Posted on 2018-11-23

767 Comparative assessment of long-read error-correction software applied to RNA-sequencing data

Ishi Soares de Lima, L.; Marchet, C.; Caboche, S.; Da Silva, C.; Istace, B.; Aury, J.-M.; Touzet, H.; Chikhi, R.

10.1101/476622 — bioinformatics — Posted on 2018-11-23

768 Infection with Persister Forms of Staphylococcus aureus Causes a Chronic Persistent Skin Infection with More Severe Lesion that Takes Longer to Heal and is not Eradicated by the Current Recommended Treatment in Mice

Yee, R.; Yuan, Y.; Brayton, C.; Leal, A. T.; Feng, J.; Shi, W.; Behrens, A.; Zhang, Y.

10.1101/476465 — microbiology — Posted on 2018-11-23

769 GWAS and PheWAS of Red Blood Cell Components in a Northern Nevadan Cohort

Schlauch, K. A.; Read, R. W.; Elhanan, G.; Metcalf, W. J.; Slonim, A. D.; Aweti, R.; Borkowski, R.; Grzymski, J. J.

10.1101/475467 — genetics — Posted on 2018-11-23

770 Isolation and characterization of extracellular vesicles from Caenorhabditis elegans for multi-omic analysis.

Russell, J. C.; Merrihew, G. E.; Robbins, J. E.; Postupna, N.; Kim, T.-K.; Golubeva, A.; Noori, A.; Wang, K.; Keene, C. D.; MacCoss, M. J.; Kaeberlein, M.

10.1101/476226 — cell biology — Posted on 2018-11-23

771 Pipeliner: A Nextflow-based framework for the definition of sequencing data processing pipelines

Federico, A.; Karagiannis, T.; Karri, K.; Kishore, D.; Koga, Y.; Campbell, J.; Monti, S.

10.1101/476515 — bioinformatics — Posted on 2018-11-23

772 How humans grasp three-dimensional objects

Klein, L. K.; Maiello, G.; Paulun, V. C.; Fleming, R. W.

10.1101/476176 — neuroscience — Posted on 2018-11-23

773 Propidium iodide staining underestimates viability of adherent bacterial cells

Rosenberg, M.; Azevedo, N. F.; Ivask, A.

10.1101/475145 — microbiology — Posted on 2018-11-23

774 An unusual and physiologically vital protein with guanylate cyclase and P-type ATPase like domain in a pathogenic protist

Günay-Esiyok, O.; Scheib, U.; Noll, M.; Gupta, N.

10.1101/475848 — microbiology — Posted on 2018-11-23

775 Identification of single nucleotide variants using position-specific error estimation in deep sequencing data

Kleftogiannis, D.; Punta, M.; Jayaram, A.; Sandhu, S.; Wong, S. Q.; Gasi Tandefelt, D.; Conteduca, V.; Wetterskog, D.; Attard, G.; Lise, S.

10.1101/475947 — genomics — Posted on 2018-11-23

776 Nuclei multiplexing with barcoded antibodies for single-nucleus genomics

Gaublomme, J. T.; Li, B.; McCabe, C.; Knecht, A.; Drokhlyansky, E.; Van Wittenberghe, N.; Waldman, J.; Dionne, D.; Nguyen, L.; De Jager, P.; Yeung, B.; Zhao, X.; Habib, N.; Rozenblatt-Rosen, O.; Regev, A.

10.1101/476036 — genomics — Posted on 2018-11-23

777 Genotyping-by-sequencing and microarrays are complementary for detecting quantitative trait loci by tagging different haplotypes in association studies

Negro, S. S.; Millet, E.; Madur, D.; Bauland, C.; Combes, V.; Welcker, C.; Tardieu, F.; Charcosset, A.; Nicolas, S. D.

10.1101/476598 — genomics — Posted on 2018-11-23

778 Incremental BLAST: incremental addition of new sequence databases through e-value correction

Dash, S.; Rahman, S.; Hines, H. M.; Feng, W.-c.

10.1101/476218 — bioinformatics — Posted on 2018-11-23

779 Effects of 5-aza-2 -deoxycytidine on human osteoarthritic chondrocytes

Kadler, S.; Vural, O.; Reiners-Schramm, L.; Lauster, R.; Rosowski, M.

10.1101/476069 — cell biology — Posted on 2018-11-22

780 Temperature-Jump Solution X-ray Scattering Reveals Distinct Motions in a Dynamic Enzyme

Thompson, M. C.; Barad, B. A.; Wolff, A. M.; Cho, H. S.; Schotte, F.; Schwarz, D. M. C.; Anfinrud, P.; Fraser, J. S.

10.1101/476432 — biophysics — Posted on 2018-11-22

781 The ligand-mediated affinity of escort proteins determines the directionality of lipophilic cargo transport

Cheng, Y.-Y.; Huang, Y.-F.; Lin, H.-H.; Chang, W.-S. W.; Lyu, P.-C.

10.1101/415984 — biophysics — Posted on 2018-11-22

782 Wheel-running exercise during adolescence may not convincingly impact cocaine conditioned place preference in male C57BL/6J mice

Lespine, L.-F.; Tirelli, E.

10.1101/477299 — neuroscience — Posted on 2018-11-22

783 The autism and schizophrenia-associated protein CYFIP1 regulates bilateral brain connectivity

Dominguez-Iturza, N.; Shah, D.; Vannelli, A.; Lo, A. C.; Armendariz, M.; Li, K. W.; Mercaldo, V.; Trusel, M.; Gastaldo, D.; Mameli, M.; Van der Linden, A.; Smit, A. B.; Achsel, T.; Bagni, C.

10.1101/477174 — neuroscience — Posted on 2018-11-22

784 Malaria-induced remodelling of the bone marrow microenvironment mediates loss of haematopoietic stem cell function

Haltalli, M. L.; Watcham, S.; Wilson, N. K.; Eilers, K.; Lipien, A.; Vainieri, M. L.; Ruivo, N.; Ang, H.; Sinden, R. E.; Duffy, K.; Gottgens, B.; Blagborough, A.; Lo Celso, C.

10.1101/477190 — cell biology — Posted on 2018-11-22

785 Genome-wide screens in accelerated human stem cell-derived neural progenitor cells identify Zika virus host factors and drivers of proliferation

Wells, M. F.; Salick, M. R.; Piccioni, F.; Hill, E. J.; Mitchell, J. M.; Worringer, K. A.; Raymond, J. J.; Kommineni, S.; Chan, K.; Ho, D.; Peterson, B. K.; Siekmann, M. T.; Pietilainen, O.; Nehme, R.; Kaykas, A.; Eggan, K.

10.1101/476440 — neuroscience — Posted on 2018-11-22

786 Sex-specific co-expression networks and sex-biased gene expression in the salmonid Brook Charr Salvelinus fontinalis

Sutherland, B. J. G.; Prokkola, J. M.; Audet, C.; Bernatchez, L.

10.1101/305680 — genomics — Posted on 2018-11-22

787 Noise-Cancelling Repeat Finder: Uncovering tandem repeats in error-prone long-read sequencing data

Harris, R. S.; Cechova, M.; Makova, K.

10.1101/475194 — bioinformatics — Posted on 2018-11-22

788 Building containerized workflows using the BioDepot-workflow-builder (Bwb)

Hung, L.-H.; Hu, J.; Meiss, T.; Ingersoll, A.; Lloyd, W.; Kristiyanto, D.; Xiong, Y.; Sobie, E.; Yeung, K. Y.

10.1101/099010 — bioinformatics — Posted on 2018-11-22

789 Ignoring stratigraphic age uncertainty leads to erroneous estimates of species divergence times under the fossilized birth-death process

Barido-Sottani, J.; Aguirre-Fernandez, G.; Hopkins, M. J.; Stadler, T.; Warnock, R. C.

10.1101/477133 — paleontology — Posted on 2018-11-22

790 The ‘zoo’ accompanying Botryococcus braunii: Unraveling the fundamentals of algae-bacteria biocoenosis

Blifernez-Klassen, O.; Klassen, V.; Wibberg, D.; Chaudhari, S.; Henke, C.; Winkler, A.; Al-Dilaimi, A.; Rupp, O.; Blom, J.; Goesmann, A.; Sczyrba, A.; Braeutigam, A.; Kalinowski, J.; Kruse, O.

10.1101/476887 — microbiology — Posted on 2018-11-22

791 Thermodynamic integration for dynamic causal models

Aponte, E. A.; Raman, S.; Fraessle, S.; Heinzle, J.; Penny, W. D.; Stephan, K. E. E.

10.1101/471417 — neuroscience — Posted on 2018-11-22

792 Integrating Vectors for Genetic Studies in the Rare Actinomycete Amycolatopsis marina

Gao, H.; Murugesan, B.; Hossbach, J.; Evans, S.; Stark, M.; Smith, M.

10.1101/436022 — microbiology — Posted on 2018-11-22

793 Chromatin profiling of the repetitive and non-repetitive genome of the human fungal pathogen Candida albicans

Price, R. J.; Weindling, E.; Berman, J.; Buscaino, A.

10.1101/475996 — genomics — Posted on 2018-11-22

794 Pooled clone collections by multiplexed CRISPR/Cas12a-assisted gene tagging in yeast

Buchmuller, B. C.; Herbst, K.; Meurer, M.; Kirrmaier, D.; Sass, E.; Levy, E. D.; Knop, M.

10.1101/476804 — genomics — Posted on 2018-11-22

795 High-quality assembly of sweet basil genome

Dudai, N.; Carp, M.-J.; Milavski, R.; Chaimovitsh, D.; Shachter, A.; Baruch, K.; Ronen, G.; Gonda, I.

10.1101/476044 — genomics — Posted on 2018-11-22

796 The study of hormonal metabolism of Trincadeira and Syrah cultivars indicates new roles of salicylic acid, jasmonates, ABA and IAA during grape ripening and upon infection with Botrytis cinerea

Coelho, J.; Almeida-Trapp, M.; Pimentel, D.; Soares, F. M.; Reis, P.; Rego, C.; Mithofer, A.; Fortes, A. M. M.

10.1101/475053 — plant biology — Posted on 2018-11-22

797 Interrogation of genes controlling biofilm formation using CRISPR interference in Pseudomonas fluorescens

Noirot-Gros, M.-F.; Forrester, S.; Malato, G.; Larsen, P.; Noirot, P. H.

10.1101/476366 — microbiology — Posted on 2018-11-22

798 MiR-195 regulates mitochondrial function by targeting mitofusin-2 in breast cancer cells

Purohit, P. K.; Edwards, R.; Tokatlidis, K.; Saini, N.

10.1101/476812 — cancer biology — Posted on 2018-11-22

799 Cooperation of partially-transformed clones: an invisible force behind the early stages of carcinogenesis

Esposito, A.

10.1101/431478 — cancer biology — Posted on 2018-11-22

800 Modeling slow-processing of toxin messenger RNAs in type-I Toxin-Antitoxin systems: post-segregational killing and noise filtering

Himeoka, Y.; Mitarai, N.

10.1101/407288 — systems biology — Posted on 2018-11-22

801 Ring shape Golden Ratio multicellular structures are algebraically afforded by asymmetric mitosis and one to one cell adhesion

Butler, W.; Kinane, T. B.

10.1101/450528 — systems biology — Posted on 2018-11-22

802 Physiological regulation of bud burst in grapevine

Signorelli, S.; Shaw, J.; Hermawaty, D.; Wang, Z.; Verboven, P.; Considine, J. A.; Considine, M. J.

10.1101/476879 — plant biology — Posted on 2018-11-22

803 Ca2+-activated K+ channels reduce network excitability, improving adaptability and energetics for transmitting and perceiving sensory information

Li, X.; Abou Tayoun, A.; Song, Z.; Dau, A.; Rien, D.; Jaciuch, D.; Dongre, S.; Blanchard, F.; Nikolaev, A.; Zheng, L.; Bollepalli, M. K.; Chu, B.; Hardie, R. C.; Dolph, P. J.; Juusola, M.

10.1101/476861 — neuroscience — Posted on 2018-11-22

804 Hunger for Knowledge: How the Irresistible Lure of Curiosity is Generated in the Brain

Lau, J. K. L.; Ozono, H.; Kuratomi, K.; Komiya, A.; Murayama, K.

10.1101/473975 — neuroscience — Posted on 2018-11-22

805 Space, time, and captivity: quantifying factors influencing the microbiome of an alpine ungulate

Haworth, S. E.; White, K. S.; Cote, S. D.; Shafer, A. B. A.

10.1101/475459 — microbiology — Posted on 2018-11-22

806 Single cell transcriptomic analysis of the adult mouse pituitary reveals a novel multi-hormone cell cluster and physiologic demand-induced lineage plasticity

Ho, Y.; Hu, P.; Peel, M. T.; Camara, P. G.; Wu, H.; Stephen, L. A.

10.1101/475558 — genomics — Posted on 2018-11-22

807 Whole plant community transplants across climates reveal total community stability due to large shifts in species assemblage

Tomiolo, S.; Bilton, M. C.; Tielboerger, K.

10.1101/475046 — ecology — Posted on 2018-11-22

808 The impact of bilateral ongoing activity on evoked responses in mouse cortex

Shimaoka, D.; Steinmetz, N.; Harris, K.; Carandini, M.

10.1101/476333 — neuroscience — Posted on 2018-11-22

809 Detection of low-frequency mutations and removal of heat-induced artifactual mutations using Duplex Sequencing

Ahn, E. H.; Lee, S. H.

10.1101/474353 — genomics — Posted on 2018-11-22

810 Laboratory evolution of a Saccharomyces cerevisiae x S. eubayanus hybrid under simulated lager-brewing conditions: genetic diversity and phenotypic convergence

Gorter de Vries, A.; Voskamp, M. A.; van Aalst, A. C. A.; Kristensen, L. H.; Jansen, L.; van den Broek, M.; Salazar, A. N.; Brouwers, N.; Abeel, T.; Pronk, J. T.; Daran, J.-M. G.

10.1101/476929 — evolutionary biology — Posted on 2018-11-22

811 Nitrogenase inhibition limited oxygenation of the Proterozoic atmosphere

Allen, J. F.; Thake, B.; Martin, W. F.

10.1101/475236 — evolutionary biology — Posted on 2018-11-22

812 Crown defoliation decreases reproduction and wood growth in a marginal European beech population.

Oddou-Muratorio, S.; Petit, C.; Journe, V.; Lingrand, M.; Magdalou, J.-A.; Hurson, C.; Garrigue, J.; Davi, H.; Magnanou, E.

10.1101/474874 — ecology — Posted on 2018-11-22

813 Inherited defects in natural killer cells shape tumor immune microenvironment, clinical outcome and immunotherapy response

Xu, X.; Li, J.; Zou, J.; Feng, X.; Zhang, C.; Zheng, R.; Duanmu, W.; Saha-Mandal, A.; Ming, Z.; Wang, E.

10.1101/471912 — cancer biology — Posted on 2018-11-22

814 Long read-based de novo assembly of low complex metagenome samples results in finished genomes and reveals insights into strain diversity and an active phage system

Somerville, V.; Lutz, S.; Schmid, M.; Frei, D.; Moser, A.; Irmler, S.; Frey, J. E.; Ahrens, C. H.

10.1101/476747 — genomics — Posted on 2018-11-22

815 Red blood cell tension controls Plasmodium falciparum invasion and protects against severe malaria in the Dantu blood group

Kariuki, S. N.; Marin-Menendez, A.; Introini, V.; Ravenhill, B. J.; Lin, Y.-C.; Macharia, A.; Makale, J.; Tendwa, M.; Nyamu, W.; Kotar, J.; Carrasquilla, M.; Rowe, J. A.; Rockett, K.; Kwiatkowski, D.; Weekes, M. P.; Cicuta, P.; Williams, T. N.; Rayner, J. C.

10.1101/475442 — genetics — Posted on 2018-11-22

816 Recommendations to address uncertainties in environmental risk assessment using toxicokinetics-toxicodynamics models

Baudrot, V.; Charles, S.

10.1101/356469 — ecology — Posted on 2018-11-22

817 The two active glutamates of the plant stress sensor PsbS contribute non-equivalently to its pH-activated molecular response mechanism

Krishnan, M.; Konold, P.; Kennis, J.; Pandit, A.

10.1101/457614 — biophysics — Posted on 2018-11-22

818 MOMO - Multi-Objective Metabolic mixed integer Optimization: application to yeast strain engineering

Andrade, R.; Doostmohammadi, M.; Santos, J. L.; Sagot, M.-F.; Mira, N. P.; Vinga, S.

10.1101/476689 — systems biology — Posted on 2018-11-22

819 Balancing energy supply during photosynthesis - a theoretical perspective

Matuszynska, A.; Saadat, N. P.; Ebenhoeh, O.

10.1101/476846 — systems biology — Posted on 2018-11-22

820 Cold Inducible RNA-binding protein (CIRBP) adjusts clock gene expression and REM sleep recovery after sleep deprivation

Hoekstra, M. M. B.; Franken, P.; Emmenegger, Y.

10.1101/476911 — neuroscience — Posted on 2018-11-22

821 A precursor of reading capacity? 3-month-old infants easily learn to pair a phoneme with a visual shape

Mersad, K.; Kabdebon, C.; Dehaene-Lambertz, G.

10.1101/466318 — neuroscience — Posted on 2018-11-22

822 Antibiotic resistance and metabolic profiles as functional biomarkers that accurately predict the geographic origin of city metagenomics samples

Casimiro-Soriguer, C. S.; Loucera, C.; Perez-Florido, J.; Lopez-Lopez, D.; Dopazo, J.

10.1101/476853 — genomics — Posted on 2018-11-22

823 Gene expression atlas of a developing tissue by single cell expression correlation analysis

Bageritz, J.; Willnow, P.; Valentini, E.; Leible, S.; Boutros, M.; Teleman, A. A.

10.1101/477125 — developmental biology — Posted on 2018-11-22

824 Analysis of a Novel Bioreactor Designed for Ultrasound Stimulation of Cell-Seeded Scaffolds

Crapps, J.; Rahimi, A.; Case, N.

10.1101/476762 — bioengineering — Posted on 2018-11-22

825 On the relationship between the rate of learning and retrieval-induced forgetting

Markoja, A.; Szollosi, A.; Racsmany, M.

10.1101/350959 — neuroscience — Posted on 2018-11-22

826 Boosting subdominant neutralizing antibody responses with a computationally designed epitope-focused immunogen

Sesterhenn, F.; Galloux, M.; Vollers, S. S.; Csepregi, L.; Yang, C.; Descamps, D.; Bonet, J.; Friedensohn, S.; Gainza, P.; Corthesy, P.; Chen, M.; Rosset, S.; Rameix-Welti, M.-A.; Eleouet, J.-F.; Reddy, S. T.; Graham, B. S.; Riffault, S.; Correia, B.

10.1101/430157 — immunology — Posted on 2018-11-22

827 Genetic dissection of a Leishmania flagellar proteome demonstrates requirement for directional motility in sand fly infections

Beneke, T.; Demay, F.; Hookway, E.; Ashman, N.; Jeffery, H.; Smith, J.; Valli, J.; Becvar, T.; Myskova, J.; Lestinova, T.; Shafiq, S.; Sadlova, J.; Volf, P.; Wheeler, R. J.; Gluenz, E.

10.1101/476994 — cell biology — Posted on 2018-11-22

828 Reconfigurable MRI coil technology can substantially reduce RF heating at the tips of bilateral deep brain stimulation implants

Golestanirad, L.; Keil, B.; Downs, S.; Kirsch, J.; Elahi, B.; Pilitsis, J.; Wald, L. L.

10.1101/474015 — biophysics — Posted on 2018-11-22

829 Beyond the seed: structural basis for supplementary mircoRNA targeting

Sheu-Gruttadauria, J.; Xiao, Y.; Gebert, L. F. R.; MacRae, I. J.

10.1101/476960 — biochemistry — Posted on 2018-11-22

830 Evidence for absence of bilateral transfer of olfactory learned information in Apis dorsata and Apis mellifera

Vijaykumar, M.; Mogily, S.; Dutta-Gupta, A.; Joseph, J.

10.1101/473637 — animal behavior and cognition — Posted on 2018-11-22

831 Neurovascular coupling preserved in a chronic mouse model of Alzheimers disease: Methodology is critical.

Sharp, P. S.; Ameen-Ali, K.; Boorman, L.; Harris, S.; Wharton, S.; Howarth, C.; Redgrave, P.; Berwick, J.

10.1101/474916 — neuroscience — Posted on 2018-11-22

832 Effect of set up protocols on the accuracy of alchemical free energy calculation over a set of ACK1 inhibitors

Granadino-Roldan, J. M.; Mey, A. S. J. S.; Perez, J. J.; Bosisio, S.; Rubio-Martinez, J.; Michel, J.

10.1101/333120 — molecular biology — Posted on 2018-11-22

833 Mosaic deletion patterns of the human antibody heavy chain gene locus as revealed by Bayesian haplotyping

Gidoni, M.; Snir, O.; Peres, A.; Polak, P.; Lindeman, I.; Mikocziova, I.; Sarna, V. K.; Lundin, K. E. A.; Clouser, C.; Vigneault, F.; Collins, A. M.; Sollid, L. M.; Yaari, G.

10.1101/314476 — genomics — Posted on 2018-11-22

834 diffcyt: Differential discovery in high-dimensional cytometry via high-resolution clustering

Weber, L. M.; Nowicka, M.; Soneson, C.; Robinson, M. D.

10.1101/349738 — bioinformatics — Posted on 2018-11-22

835 Enhancer-gene maps in the human and zebrafish genomes using evolutionary linkage conservation

Clement, Y.; Torbey, P.; Gilardi-Hebenstreit, P.; Roest Crollius, H.

10.1101/244475 — genomics — Posted on 2018-11-22

836 Hypothesis-free analysis of deep vein thrombosis aetiology: a Mendelian randomization study

Constantinescu, A.-E.; Bull, C. J.; Zheng, J.; Elsworth, B.; Hers, I.; Timpson, N. J.; Moore, S.; Vincent, E.

10.1101/476135 — epidemiology — Posted on 2018-11-22

837 Evaluating stably expressed genes in single cells

Lin, Y.; Ghazanfar, S.; Strbenac, D.; Wang, A.; Patrick, E.; Lin, D.; Speed, T.; Yang, J.; Yang, P.

10.1101/229815 — bioinformatics — Posted on 2018-11-22

838 Epigenetic regulation of PAR4-related platelet activation: mechanistic links between environmental exposure and cardiovascular disease

Corbin, L. J.; Taylor, A. E.; White, S. J.; Williams, C. M.; Taylor, K.; van den Bosch, M. T.; Teasdale, J. E.; Jones, M.; Bond, M.; Harper, M. T.; Falk, L.; Groom, A.; Hazell, G. G. J.; Paternoster, L.; Munafo, M. R.; Nordestgaard, B. G.; Tybjaerg-Hansen, A.; Bojesen, S. E.; Relton, C.; Min, J. L.; Davey Smith, G.; Mumford, A. D.; Poole, A. W.; Timpson, N. J.

10.1101/473728 — epidemiology — Posted on 2018-11-22

839 Modelling invasive pathogen load from non-destructive sampling data

Martinkova, N.; Skrabanek, P.; Pikula, J.

10.1101/474817 — epidemiology — Posted on 2018-11-22

840 Attraction to pheromones in Caenorhabditis elegans can be reversed through associative learning

Dal Bello, M.; Perez-Escudero, A.; Schroeder, F. C.; Gore, J.

10.1101/476648 — ecology — Posted on 2018-11-22

841 NDRG2 Regulates Adherens Junction Integrity to Restrict Colitis and Tumorigenesis

Ma, Y.; Wei, m.; Shen, l.; Xu, Y.; Liu, L.; Bu, X.; Qin, H.; Li, Z.; Wang, Z.; Wu, K.; Yao, L.; zhang, j.

10.1101/473397 — cancer biology — Posted on 2018-11-22

842 Facile method for screening clinical T cell receptors for off-target peptide-HLA reactivity

Gee, M. H.; Yang, X.; Garcia, K. C.

10.1101/472480 — immunology — Posted on 2018-11-22

843 Kinesin-6 Klp9 plays motor-dependent and -independent roles in collaboration with Kinesin-5 Cut7 and the microtubule crosslinker Ase1 in fission yeast

Toda, T.; Yukawa, M.; Okazaki, M.; Teratani, Y.; Furuta, K.

10.1101/476754 — cell biology — Posted on 2018-11-22

844 Genome-wide screening reveals a novel class of carbonic anhydrase-like inorganic carbon transporters in chemoautotrophic bacteria

Desmarais, J. J.; Flamholz, A. I.; Blikstad, C.; Dugan, E. J.; Laughlin, T. G.; Oltrogge, L. M.; Wetmore, K.; Wang, J. Y.; Savage, D. F.

10.1101/476713 — molecular biology — Posted on 2018-11-22

845 Time-resolved systems analysis reveals a critical role of XCR1+ 1 dendritic cells in the maintenance of effector T cells during chronic viral infection

Argilaguet, J.; Pedragosa, M.; Esteve-Codina, A.; Riera, G.; Vidal, E.; Peligero-Cruz, C.; Andreu, D.; Kaisho, T.; Bocharov, G.; Ludewig, B.; Heath, S.; Meyerhans, A.

10.1101/476077 — immunology — Posted on 2018-11-22

846 Mathematical Details on a Cancer Resistance Model

Greene, J.; Sanchez-Tapia, C.; Sontag, E.

10.1101/475533 — cancer biology — Posted on 2018-11-22

847 A xylose-inducible expression system and a CRISPRi-plasmid for targeted knock-down of gene expression in Clostridioides difficile

Muh, U.; Pannullo, A. G.; Weiss, D. S.; Ellermeier, C. D.

10.1101/476796 — microbiology — Posted on 2018-11-22

848 The mouse Klf1 Nan variant impairs nuclear condensation and erythroid maturation

Cantu, I.; van de Werken, H. J.; Gillemans, N.; Stadhouders, R.; Heshusius, S.; Maas, A.; Ozgur, Z.; van IJcken, W.; Grosveld, F.; von Lindern, M.; Philipsen, S.; van Dijk, T. B.

10.1101/477059 — developmental biology — Posted on 2018-11-22

849 A stress-response-related inter-compartmental signalling pathway regulates embryonic cuticle integrity in Arabidopsis

Creff, A.; Brocard, L.; Joubes, J.; Taconnat, L.; Doll, N.; Pascal, S.; Galletti, R.; Marsollier, A.-C.; Moussu, S.; Widiez, T.; Domergue, F.; Ingram, G. C.

10.1101/477109 — plant biology — Posted on 2018-11-22

850 Small GTPase patterning: How to stabilise cluster coexistence

Jacobs, B.; Molenaar, J.; Deinum, E. E.

10.1101/477091 — biophysics — Posted on 2018-11-22

851 Astroglial dysfunctions drive aberrant synaptogenesis in developing brain with lengthy general anesthesia

Jiang, R.; Zhou, B.; Chen, L.; Liao, P.; Huang, L.; Chen, Z.; Yu, G.; Zhang, J.; Wang, L.; Zuo, Y.; Liu, J.

10.1101/477075 — neuroscience — Posted on 2018-11-22

852 The cost of being stable: Trade-offs between effort and stability across a landscape of redundant motor solutions

Sohn, M. H.; Ting, L.

10.1101/477083 — neuroscience — Posted on 2018-11-22

853 Fungal symbionts produce prostaglandin E2 to promote their intestinal colonization

Tan, T. G.; Lim, Y. S.; Tan, A.; Leong, R.; Pavelka, N.

10.1101/477117 — microbiology — Posted on 2018-11-22

854 Construction of an index system for big data application in health care enterprises: A study based on the Delphi method

Chang, Y.; Du, W.; Shi, R.; Tang, L.; Zhou, H.; Li, D.; Hu, J.; Fan, X.

10.1101/477067 — scientific communication and education — Posted on 2018-11-22

855 The sustained release of basic fibroblast growth factor accelerates angiogenesis and the survival of the inactivated dermis by high hydrostatic pressure

Le, T. M.; Morimoto, N.; Mitsui, T.; Notodihardjo, S. C.; Munisso, M. C.; Kakudo, N.; Kusumoto, K.

10.1101/477042 — bioengineering — Posted on 2018-11-22

856 A Computational Framework for DNA Sequencing-Based Microscopy

Hoffecker, I. T.; Yang, Y.; Bernardinelli, G.; Orponen, P.; Högberg, B.

10.1101/476200 — biophysics — Posted on 2018-11-21

857 Bone marrow-on-a-chip: Emulating the human bone marrow

Sieber, S.; Winter, A.; Wachsmuth, J.; David, R.; Stecklum, M.; Hellmeyer, L.; Ewart, L.; Marx, U.; Lauster, R.; Rosowski, M.

10.1101/469528 — bioengineering — Posted on 2018-11-21

858 TISMorph: A tool to quantify texture, irregularity andspreading of single cells

Alizadeh, E.; Xu, W.; Castle, J.; Foss, J.; Prasad, A.

10.1101/372755 — bioengineering — Posted on 2018-11-21

859 Meta-analysis of Reward Processing in Major Depressive Disorder Reveals Distinct Abnormalities within the Reward Circuit

Ng, T. H.; Alloy, L. B.; Smith, D. V.

10.1101/332981 — neuroscience — Posted on 2018-11-21

860 Genome sequence of the corn leaf aphid (Rhopalosiphum maidis Fitch)

Chen, W.; Shakir, S.; Bigham, M.; Fei, Z.; Jander, G.

10.1101/438499 — genomics — Posted on 2018-11-21

861 Dissecting heterogeneous cell-populations across signaling and disease conditions with PopAlign

Chen, S.; Park, J. H.; Rivaud, P.; Charles, E.; Haliburton, J.; Pichiorri, F.; Thomson, M.

10.1101/421354 — bioinformatics — Posted on 2018-11-21

862 Front-end Weber-Fechner gain control enhances the fidelity of combinatorial odor coding

Kadakia, N.; Emonet, T.

10.1101/475103 — neuroscience — Posted on 2018-11-21

863 C. elegans pathogenic learning confers multigenerational pathogen avoidance

Moore, R. S.; Kaletsky, R.; Murphy, C. T.

10.1101/476416 — genetics — Posted on 2018-11-21

864 Multi-Scale Structural Analysis of Proteins by Deep Semantic Segmentation

Eguchi, R. R.; Huang, P.-S.

10.1101/474627 — bioinformatics — Posted on 2018-11-21

865 Incorporating Context into Language Encoding Models for fMRI

Jain, S.; Huth, A.

10.1101/327601 — neuroscience — Posted on 2018-11-21

866 Older adults sacrifice response speed to preserve multisensory integration performance

Jones, S. A.; Beierholm, U.; Noppeney, U.

10.1101/474882 — neuroscience — Posted on 2018-11-21

867 Can you have multiple attentional templates? Large-scale replications of Van Moorselaar, Theeuwes and Olivers (2014) and Hollingworth and Beck (2016)

Fratescu, M.; Van Moorselaar, D.; Mathot, S.

10.1101/474932 — neuroscience — Posted on 2018-11-21

868 Evolution of limb development in cephalopod mollusks

Tarazona, O. A.; Lopez, D. H.; Slota, L. A.; Cohn, M. J.

10.1101/379735 — developmental biology — Posted on 2018-11-21

869 A century of decline: loss of genetic diversity in a southern African lion-conservation stronghold

Dures, S. G.; Carbone, C.; Loveridge, A. J.; Maude, G.; Midlane, N.; Aschenborn, O.; Gottelli, D.

10.1101/474940 — zoology — Posted on 2018-11-21

870 Toll-like receptor 3 activation increases voluntary alcohol intake in C57BL/6J male mice

Warden, A.; Azzam, M.; DaCosta, A.; Mason, S.; Blenov, Y.; Messing, R. O.; Mayfield, R. D.; Harris, R. A.

10.1101/476457 — neuroscience — Posted on 2018-11-21

871 Interpreting HIV Diagnostic Histories into Infection Time Estimates: Analytical Framework and Online Tool

Grebe, E.; Facente, S. N.; Bingham, J.; Pilcher, C. D.; Powrie, A.; Gerber, J.; Priede, G.; Chibawara, T.; Busch, M. P.; Murphy, G.; Kassanjee, R.; Welte, A.

10.1101/323808 — epidemiology — Posted on 2018-11-21

872 Waving goodbye to contrast: Self-generated hand movements attenuate visual sensitivity

Vasser, M.; Vuillaume, L.; Cleeremans, A.; Aru, J.

10.1101/474783 — neuroscience — Posted on 2018-11-21

873 Catecholamine modulation of evidence accumulation during perceptual decision formation; a randomised trial.

Loughnane, G.; Brosnan, M.; Barnes, J.; Dean, A.; Nandam, L. S.; O'Connell, R.; Bellgrove, M.

10.1101/470120 — neuroscience — Posted on 2018-11-21

874 On estimating evolutionary probabilities of population variants

Kumar, S.; Patel, R.

10.1101/475475 — evolutionary biology — Posted on 2018-11-21

875 Identification of Ovarian Cancer Gene Expression Patterns Associated with Disease Progression and Mortality

Hossain, M. A.; Islam, S. M. S.; Quinn, J.; Huq, F.; Moni, M. A.

10.1101/473165 — bioinformatics — Posted on 2018-11-21

876 Strengths and potential pitfalls of hay-transfer for ecological restoration revealed by RAD-seq analysis in two floodplain Arabis species

Dittberner, H.; Becker, C.; Jiao, W.-B.; Schneeberger, K.; Hoellzel, N.; Tellier, A.; de Meaux, J.

10.1101/474858 — ecology — Posted on 2018-11-21

877 Newly developed single-cell computational approach elucidates the stabilization of Oct4 expression in the E3.25 mouse preimplantation embryo

Gerovska, D.; Arauzo-Bravo, M. J.

10.1101/476127 — developmental biology — Posted on 2018-11-21

878 Mammalian SWI/SNF collaborates with a polycomb-associated protein to regulate male germ line transcription in the mouse

Menon, D. U.; Shibata, Y.; Mu, W.; Magnuson, T.

10.1101/476143 — developmental biology — Posted on 2018-11-21

879 The CIC-DUX4 fusion oncoprotein drives metastasis and tumor growth via distinct downstream regulatory programs and therapeutic targets in sarcoma

Okimoto, R. A.; Wu, W.; Nanjo, S.; Olivas, V.; Lin, Y.; Oyama, R.; Kondo, T.; Bivona, T. G.

10.1101/476283 — cancer biology — Posted on 2018-11-21

880 Genomic epidemiology supports multiple introductions and cryptic transmission of Zika virus in Colombia

Black, A.; Moncla, L. H.; Laiton-Donato, K.; Potter, B.; Pardo, L.; Rico, A.; Tovar, C.; Rojas, D. P.; Longini, I. M.; Halloran, M. E.; Pelaez-Carvajal, D.; Ramirez, J. D.; Mercado-Reyes, M.; Bedford, T.

10.1101/454777 — genomics — Posted on 2018-11-21

881 A Computational Framework for DNA Sequencing-Based Microscopy

Hoffecker, I. T.; Yang, Y. T.; Bernardinelli, G.; Orponen, P.; Högberg, B.

10.1101/476200 — biophysics — Posted on 2018-11-21

882 Two-photon frequency division multiplexing for functional in vivo imaging: a feasibility study.

Tsyboulski, D.; Orlova, N.; Ledochowitsch, P.; Saggau, P.

10.1101/405118 — neuroscience — Posted on 2018-11-21

883 Self-assembly of polymer-encased lipid nanodiscs and membrane protein reconstitution

Sahoo, B.; Genjo, T.; Maharana, K.; Ramamoorthy, A.

10.1101/476556 — biophysics — Posted on 2018-11-21

884 Temperature-Jump Solution X-ray Scattering Reveals Distinct Motions in a Dynamic Enzyme

Thompson, M. C.; Barad, B. A.; Wolff, A. M.; Cho, H. S.; Schotte, F.; Schwarz, D. M. C.; Anfinrud, P.; Fraser, J. S.

10.1101/476432 — biophysics — Posted on 2018-11-21

885 On the impact of chemo-mechanically induced phenotypic transitions in gliomas

Mascheroni, P.; Lopez Alfonso, J. C.; Kalli, M.; Stylianopoulos, T.; Meyer-Hermann, M.; Hatzikirou, H.

10.1101/476150 — biophysics — Posted on 2018-11-21

886 Numerical parameter space compression and its application to microtubule dynamic instability

Hsu, C.-T.; Brouhard, G. J.; Francois, P.

10.1101/475772 — biophysics — Posted on 2018-11-21

887 Mechanistic investigation of mEos4b reveals a strategy to reduce track interruptions in sptPALM

De Zitter, E.; Thedie, D.; Monkemoller, V.; Hugelier, S.; Beaudouin, J.; Adam, V.; Byrdin, M.; Van Meervelt, L.; Dedecker, P.; Bourgeois, D.

10.1101/475939 — biophysics — Posted on 2018-11-21

888 Limits of chromosome compaction by loop-extruding motors

Banigan, E. J.; Mirny, L. A.

10.1101/476424 — biophysics — Posted on 2018-11-21

889 Improvement in Patient-Reported Sleep in Type 2 Diabetes and Prediabetes Participants Receiving a Continuous Care Intervention with Nutritional Ketosis

Siegmann, M.; Athinarayanan, S.; Hallberg, S.; McKenzie, A.; Bhanpuri, N.; Campbell, W.; McCarter, J.; Phinney, S.; Volek, J.; Van Dort, C.

10.1101/389841 — clinical trials — Posted on 2018-11-21

890 Ventral tegmental dopamine inputs to the nucleus accumbens mediates cue-triggered motivation but not reward expectancy

Halbout, B.; Marshall, A. T.; Azimi, A.; Liljeholm, M.; Mahler, S. V.; Wassum, K. M.; Ostlund, S. B.

10.1101/272963 — neuroscience — Posted on 2018-11-21

891 Post-hoc analyses of Surrogate Markers of Non-Alcoholic Fatty Liver Disease (NAFLD) and Liver Fibrosis in Patients with Type 2 Diabetes in a Digitally-Supported Continuous Care Intervention: An Open Label, Non-Randomized, Controlled Study

Vilar-Gomez, E.; Athinarayanan, S. J.; Adams, R. N.; Hallberg, S. J.; Bhanpuri, N. H.; McKenzie, A. L.; Campbell, W. W.; McCarter, J. P.; Phinney, S. D.; Volek, J. S.; Chalasani, N.

10.1101/293548 — clinical trials — Posted on 2018-11-21

892 The Barcode, UMI, Set format and BUStools

Melsted, P.; Ntranos, V.; Pachter, L.

10.1101/472571 — bioinformatics — Posted on 2018-11-21

893 A comparison of deep learning and linear-nonlinear cascade approaches to neural encoding

Moskovitz, T. H.; Roy, N. A.; Pillow, J. W.

10.1101/463422 — neuroscience — Posted on 2018-11-21

894 Factors Affecting Electroconvulsive Therapy Ictal Outcomes: Duration and Postictal Suppression

Ingram, W. M.; Weston, C.; Lu, W. D.; Hodge, C. B.; Poler, S. M.; Nahi, F. T.; Larson, S.

10.1101/433789 — neuroscience — Posted on 2018-11-21

895 Synthesis, SAR and Docking Studies of Substituted Aryl phenylthiazolyl phenylcarboxamide as potential Protein Tyrosine Phosphatase 1B Inhibitors

Varshney, K.; Gupta, A. K.; Rawat, A.; Srivastava, R.; Mishra, A.; Saxena, M.; Srivastava, A. K.; Jain, S.; Saxena, A. K.

10.1101/472670 — pharmacology and toxicology — Posted on 2018-11-21

896 Interpreting HIV Diagnostic Histories into Infection Time Estimates: Analytical Framework and Online Tool

Grebe, E.; Facente, S. N.; Bingham, J.; Pilcher, C. D.; Powrie, A.; Gerber, J.; Priede, G.; Chibawara, T.; Busch, M.; Murphy, G.; Kassanjee, R.; Welte, A.

10.1101/323808 — epidemiology — Posted on 2018-11-21

897 Excitability changes in the motor cortex in preparation for self-paced and cue-guided movements: a transcranial magnetic stimulation study

Ibanez, J.; Hannah, R.; Rocchi, L.; Rothwell, J. C.

10.1101/470153 — neuroscience — Posted on 2018-11-21

898 Chromosomal fusion and life history-associated genomic variation contribute to within-river local adaptation of Atlantic salmon

Wellband, K.; Merot, C.; Linnansaari, T.; Elliott, J. A. K.; Curry, R. A.; Bernatchez, L.

10.1101/347724 — genomics — Posted on 2018-11-21

899 Using genetics to examine a general liability to childhood psychopathology

Riglin, L.; Thapar, A. K.; Leppert, B.; Martin, J.; Richards, A.; Anney, R.; Davey Smith, G.; Tilling, K.; Stergiakouli, E.; Lahey, B. B.; O'Donovan, M. C.; Collishaw, S.; Thapar, A.

10.1101/409540 — genetics — Posted on 2018-11-21

900 Protein inference using PIA workflows and PSI standard file formats

Uszkoreit, J.; Perez-Riverol, Y.; Eggers, B.; Marcus, K.; Eisenacher, M.

10.1101/424473 — bioinformatics — Posted on 2018-11-21

901 General Functional Connectivity: shared features of resting-state and task fMRI drive reliable and heritable individual differences in functional brain networks

Elliott, M. L.; Knodt, A. R.; Cooke, M.; Kim, M. J.; Melzer, T. R.; Keenan, R.; Ireland, D.; Ramrakha, S.; Poulton, R.; Caspi, A.; Moffitt, T. E.; Hariri, A. R.

10.1101/330530 — neuroscience — Posted on 2018-11-21

902 A Stochastic Model for Cancer Metastasis: Branching Stochastic Process with Settlement

Frei, C.; Hillen, T.; Rhodes, A.

10.1101/294157 — cancer biology — Posted on 2018-11-21

903 Moderate consistency in smooth newt behaviour

Chajma, P.; Kopecky, O.; Vojar, J.

10.1101/363648 — animal behavior and cognition — Posted on 2018-11-21

904 Deep Unfolded Robust PCA with Application toClutter Suppression in Ultrasound

Solomon, O.; Cohen, R.; Zhang, Y.; Yang, Y.; Qiong, H.; Luo, J.; can Sloun, R. J.; Eldar, Y. C.

10.1101/469437 — bioengineering — Posted on 2018-11-21

905 Circuit directionality for motivation: lateral accumbens-pallidum, but not pallidum-accumbens, connections regulate motivational attraction to reward cues

Smedley, E. B.; DiLeo, A.; Smith, K. S.

10.1101/474387 — neuroscience — Posted on 2018-11-21

906 Bone marrow-on-a-chip: Emulating the human bone marrow

Sieber, S.; Winter, A.; Wachsmuth, J.; David, R.; Stecklum, M.; Hellmeyer, L.; Ewart, L.; Marx, U.; Lauster, R.; Rosowski, M.

10.1101/469528 — bioengineering — Posted on 2018-11-21

907 Reverse-Correlation Analysis of the Mechanosensation Circuit and Behavior in C. elegans Reveals Temporal and Spatial Encoding

Porto, D. A.; Giblin, J.; Zhao, Y.; Lu, H.

10.1101/147363 — bioengineering — Posted on 2018-11-21

908 A database of egg size and shape from more than 6,700 insect species

Church, S. H.; Donoughe, S.; de Medeiros, B. A. S.; Extavour, C. G.

10.1101/471953 — evolutionary biology — Posted on 2018-11-21

909 In Silico Determined Properties of Designed Superoxide Dismutase-1 Mutants Predict ALS-like Phenotypes In Vitro and In Vivo

DuVal, M. G.; McAlary, L.; Habibi, M.; Garg, P.; Sher, M.; Cashman, N.; Allison, W. T.; Plotkin, S. S.

10.1101/474585 — biophysics — Posted on 2018-11-21

910 Software-aided workflow for predicting protease-specific cleavage sites using physicochemical properties of the natural and unnatural amino acids in peptide-based drug discovery.

Radchenko, T.; Fontaine, F.; Morettoni, L.; Zamora, I.

10.1101/340604 — bioinformatics — Posted on 2018-11-21

911 Single-cell whole-brain imaging and network analysis provide evidence of the three-stage hypothesis of addiction

Kimbrough, A.; Lurie, D. J.; Collazo, A.; Kreifeldt, M.; Sidhu, H.; D'Esposito, M.; Contet, C.; George, O.

10.1101/471847 — neuroscience — Posted on 2018-11-21

912 Red blood cell tension controls Plasmodium falciparum invasion and protects against severe malaria in the Dantu blood group

10.1101/475442 — genetics — Posted on 2018-11-21

913 Environmental Optimization Enables Maintenance of Quiescent Hematopoietic Stem Cells Ex Vivo

Kobayashi, H.; Morikawa, T.; Okinaga, A.; Hamano, F.; Hashidate-Yoshida, T.; Watanuki, S.; Hishikawa, D.; Shindou, H.; Arai, F.; Kabe, Y.; Suematsu, M.; Shimizu, T.; Takubo, K.

10.1101/475905 — cell biology — Posted on 2018-11-21

914 Variability of soybean response to rhizobia inoculant, Vermicompost, and a legume-specific fertilizer blend in Siaya County of Kenya

Mathenge, C.; Thuita, M.; Masso, C.; Gweyi, J. O.; Vanlauwe, B.; Catherine Mathenge, Cargele Masso, Joseph Gweyi-Onyango and Bernard Vanlauwe,

10.1101/476291 — plant biology — Posted on 2018-11-21

915 The in vivo transcriptome of Schistosoma mansoni in two prominent vector species, Biomphalaria pfeifferi and B. glabrata

Buddenborg, S. K.; Kamel, B.; Hanelt, B.; Bu, L.; Zhang, S.-M.; Mkoji, G. M.; Loker, E. S.

10.1101/476325 — molecular biology — Posted on 2018-11-21

916 Comprehensive analysis of miRNA and protein profiles within exosomes derived from canine lymphoid tumour cell lines

Asada, H.; Tomiyasu, H.; Uchikai, T.; Ishihara, G.; Goto-Koshino, Y.; Ohno, K.; Tsujimoto, H.

10.1101/476309 — cancer biology — Posted on 2018-11-21

917 The long noncoding RNA Hand2as orchestrates heart development through regulation of precise expression of HAND2

Han, X.; Zhang, J.; Liu, Y.; Fan, X.; Ai, S.; Luo, Y.; Li, X.; Luo, S.; Zheng, H.; Yue, Y.; Chang, Z.; Yang, Z.; Tang, F.; He, A.; Shen, X.

10.1101/475723 — developmental biology — Posted on 2018-11-21

918 TCF7L1 and TCF7 differentially regulate specific mouse ES cell genes in response to GSK-3 inhibition

Moreira, S.; Seo, C.; Polena, E.; Mahendram, S.; Mercier, E.; Blais, A.; Doble, B.

10.1101/473801 — cell biology — Posted on 2018-11-21

919 PEDIA: Prioritization of Exome Data by Image Analysis

Hsieh, T.-C.; Mensah, M. A.; Pantel, J. T.; PEDIA consortium, ; Krawitz, P.

10.1101/473306 — bioinformatics — Posted on 2018-11-21

920 Stably expressed genes in single-cell RNA-sequencing

Deeke, J. M.; Gagnon-Bartsch, J. A.

10.1101/475426 — bioinformatics — Posted on 2018-11-21

921 Heterochromatin protein 1 (HP1) is intrinsically required for post-transcriptional regulation of Drosophila Germline Stem Cell (GSC) maintenance

Casale, A. M.; Cappucci, U.; Fanti, L.; Piacentini, L.

10.1101/474833 — genetics — Posted on 2018-11-21

922 Deriving Cardiomyocytes from Human Amniocytes

Maguire, C. T.; Sunderland, R.; Demarest, B. L.; Gorsi, B.; Jackson, J.; LOPEZ-IZQUIERDO, A.; Martin Tristani-Firouzi, M.; Yost, H. J.; Condic, M. L.

10.1101/475624 — developmental biology — Posted on 2018-11-21

923 Glutamate signaling at cytoneme synapses

Huang, H.; Liu, S.; Kornberg, T. B.

10.1101/475665 — developmental biology — Posted on 2018-11-21

924 Prokaryotic genome expansion is facilitated by phages and plasmids but impaired by CRISPR

Chen, W.; Gao, N. L.; Martin, L. J.; Chen, J.

10.1101/474767 — bioinformatics — Posted on 2018-11-21

925 Calcium activation of cortical neurons by continuous electrical stimulation: Frequency-dependence, temporal fidelity and activation density

Michelson, N. J.; Eles, J. R.; Vazquez, A. L.; Ludwig, K. A.; Kozai, T. D. Y.

10.1101/338525 — neuroscience — Posted on 2018-11-21

926 Simulation of visual perception and learning with a retinal prosthesis

Golden, J. R.; Erickson-Davis, C.; Cottaris, N. P.; Parthasarathy, N.; Rieke, F.; Brainard, D. H.; Wandell, B. A.; Chichilnisky, E. J.

10.1101/206409 — neuroscience — Posted on 2018-11-21

927 Integrative analysis of rare variants and pathway information shows convergent results between immune pathways, drug targets and epilepsy genes

10.1101/410100 — genomics — Posted on 2018-11-20

928 Miniaturized Permeability Assay for CRISPR-Mediated Genome-Wide Screens

Simonneau, C.; Yang, J.; Kong, X.; Kilker, R.; Edelstein, L.; Fortina, P.; Londin, E.; Horowitz, A.

10.1101/471854 — cell biology — Posted on 2018-11-20

929 Hayai-Annotation Plants: an ultra-fast and comprehensive gene annotation system in plants

Ghelfi, A.; Shirasawa, K.; Hirakawa, H.; Isobe, S.

10.1101/473488 — bioinformatics — Posted on 2018-11-20

930 Comparative Performance of the Finite Element Method and the Boundary Element Fast Multipole Method for a Canonic Problem Mimicking Transcranial Magnetic Stimulation (TMS)

Htet, A. T.; Saturnino, G. B.; Burnham, E. H.; Nummenmaa, A.; Makarov, S. N.

10.1101/411082 — bioengineering — Posted on 2018-11-20

931 Modeling Attention Control Using A Convolutional Neural Network Designed After The Ventral Visual Pathway

Yu, C.-P.; Liu, H.; Samaras, D.; Zelinsky, G.

10.1101/473124 — neuroscience — Posted on 2018-11-20

932 DNA methylation modules associate with incident cardiovascular disease and cumulative risk factor exposure

Westerman, K.; Sebastiani, P.; Jacques, P.; Liu, S.; DeMeo, D.; Ordovas, J. M.

10.1101/471722 — genomics — Posted on 2018-11-20

933 Reorganization of 3D Genome Structure May Contribute to Gene Regulatory Evolution in Primates

Eres, I. E.; Luo, K.; Hsiao, C. J.; Blake, L. E.; Gilad, Y.

10.1101/474841 — genomics — Posted on 2018-11-20

934 Ligand binding promiscuity of αVβ3 integrin is enlarged in response to mechanical force

Bachmann, M.; Schäfer, M.; Mykuliak, V.; Ripamonti, M.; Heiser, L.; Weissenbruch, K.; Krübel, S.; Franz, C. M.; Hytönen, V.; Wehrle-Haller, B.; Bastmeyer, M.

10.1101/200493 — cell biology — Posted on 2018-11-20

935 Combined use of Candida Utilis and Idesia polycarpa var. Vestita Fruit Improve the Production Performance of Laying Quail

Liu, X.; Li, N.; Shu, Y.; Sun, Y.; Li, Y.; Hua, W.; Ye, Y.; Chen, F.; Tang, L.

10.1101/471201 — microbiology — Posted on 2018-11-20

936 Unraveling intratumoral heterogeneity through high-sensitivity single-cell mutational analysis and parallel RNA-sequencing

10.1101/474734 — genomics — Posted on 2018-11-20

937 MiR-146a wild-type 3’ sequence identity is dispensable for proper innate immune function in vivo

Neilson, J. R.; Bertolet, G.; Kongchan, N.; Miller, R.; Patel, R. K.; Jain, A.; Choi, J. M.; Saltzman, A.; Christenson, A.; Jung, S. Y.; Malovannaya, A.; Grimson, A.

10.1101/474791 — genetics — Posted on 2018-11-20

938 Multi-Scale Structural Analysis of Proteins by Deep Semantic Segmentation

Eguchi, R. R.; Huang, P.-S.

10.1101/474627 — bioinformatics — Posted on 2018-11-20

939 Rapid Brain Responses to Familiar vs. Unfamiliar Music - an EEG and Pupillometry study

Jagiello, R.; Pomper, U.; Yoneya, M.; Zhao, S.; Chait, M.

10.1101/466359 — neuroscience — Posted on 2018-11-20

940 Periplasmic protein EipA determines envelope stress resistance and virulence in Brucella abortus

Herrou, J.; Willett, J.; Fiebig, A.; Varesio, L.; Czyz, D.; Cheng, J.; Ultee, E.; Briegel, A.; Bigelow, L.; Babnigg, G.; Kim, Y.; Crosson, S.

10.1101/442541 — microbiology — Posted on 2018-11-20

941 An empirical Bayes method for serotype case-carrier ratios, with an application to Group B streptococcus

Lewnard, J. A.; Cowley, L. A.

10.1101/421412 — epidemiology — Posted on 2018-11-20

942 Re-expression of SynGAP Protein in Adulthood Improves Translatable Measures of Brain Function and Behavior in a Model of Neurodevelopmental Disorders

Creson, T.; Rojas, C.; Hwaun, E.; Vaissiere, T.; Kilinc, M.; Holder, J. L.; Tang, J.; Colgin, L. L.; Miller, C. A.; Rumbaugh, G.

10.1101/474965 — neuroscience — Posted on 2018-11-20

943 DAZL is a master translational regulator of murine spermatogenesis

Li, H.; Liang, Z.; Yang, J.; Wang, D.; Wang, H.; Zhu, M.; Geng, B.; Xu, E. Y.

10.1101/472191 — developmental biology — Posted on 2018-11-20

944 Prediction in Human Auditory Cortex

Forseth, K. J.; Hickok, G.; Rollo, P. S.; Tandon, N.

10.1101/474718 — neuroscience — Posted on 2018-11-20

945 Artificial selection of microbial communities to enhance degradation of recalcitrant polymers

Wright, R. J.; Gibson, M. I.; Christie-Oleza, J. A.

10.1101/474742 — microbiology — Posted on 2018-11-20

946 Fetal and trophoblast PI3Kp110α have distinct roles in regulating resource supply to the growing fetus

Lopez-Tello, J.; Perez-Garcia, V.; Khaira, J.; Kusinski, L. C.; Cooper, W. N.; Andrani, A.; Grant, I.; Fernandez de Liger, E.; Hemberger, M.; Sandovici, I.; Constancia, M.; Sferruzzi-Perri, A. N.

10.1101/473967 — developmental biology — Posted on 2018-11-20

947 Miniaturized Permeability Assay for CRISPR-Mediated Genome-Wide Screens

Simonneau, C.; Yang, J.; Kong, X.; Kilker, R.; Edelstein, L.; Fortina, P.; Londin, E.; Horowitz, A.

10.1101/471854 — cell biology — Posted on 2018-11-20

948 Identifying Gene Expression Programs of Cell-type Identity and Cellular Activity with Single-Cell RNA-Seq

Kotliar, D.; Veres, A.; Nagy, M. A.; Tabrizi, S.; Hodis, E.; Melton, D. A.; Sabeti, P. C.

10.1101/310599 — bioinformatics — Posted on 2018-11-20

949 Risk stratification of allogeneic stem cell recipients with respect to the potential for development of GVHD via their pre-transplant plasma lipid and metabolic signature

Contaifer, D.; Roberts, C. H.; Kumar, N. G.; Natarajan, R.; Fisher, B. J.; Leslie, K.; Reed, J.; Toor, A. A.; Wijesinghe, D. S.

10.1101/475244 — biochemistry — Posted on 2018-11-20

950 Reconstitution of eukaryotic chromosomes and manipulation of DNA N6-methyladenine alters chromatin and gene expression

Beh, L. Y.; Debelouchina, G. T.; Clay, D. M.; Thompson, R. E.; Lindblad, K. A.; Hutton, E. R.; Bracht, J. R.; Sebra, R. P.; Muir, T. W.; Landweber, L. F.

10.1101/475384 — biochemistry — Posted on 2018-11-20

951 CD8+ lymphocytes modulate acute ZIKV viremia, innate antiviral immunity and tissue dissemination in nonhuman primates

Schouest, B.; Fahlberg, M.; Scheef, E. A.; Ward, M. J.; Headrick, K.; Blair, R. V.; Gilbert, M. H.; Doyle-Meyers, L. A.; Danner, V. W.; Wesson, D. M.; Panganiban, A. T.; Maness, N. J.

10.1101/475418 — immunology — Posted on 2018-11-20

952 aFARP-ChIP-seq, a convenient and reliable method for genome profiling in as few as 100 cells with a capability for multiplexing ChIP-seq

Liu, W.; Yue, S.; Zheng, X.; Cao, J.; Zheng, Y.

10.1101/474676 — genomics — Posted on 2018-11-20

953 Identification of a putative nuclear localization signal in maspin protein shed light into its nuclear import regulation

Reina, J.; Zhou, L.; Fontes, M. R.; Pante, N.; Cella, N.

10.1101/474379 — cell biology — Posted on 2018-11-20

954 TSD: A computational tool to study the complex structural variants using PacBio targeted sequencing data

Meng, G.; Tan, Y.; Fan, Y.; Wang, Y.; Qiu, Y.; Fanning, G.

10.1101/474445 — bioinformatics — Posted on 2018-11-20

955 Neural Signatures of Prediction Errors in a Decision-making Task are Modulated by Action Execution Failures

McDougle, S. D.; Butcher, P. A.; Parvin, D.; Mushtaq, F.; Niv, Y.; Ivry, R. B.; Taylor, J. A.

10.1101/474361 — neuroscience — Posted on 2018-11-20

956 A Novel Class of Inferior Colliculus Principal Neurons Labeled in Vasoactive Intestinal Peptide-Cre Mice

Goyer, D.; Silveira, M. A.; George, A. P.; Beebe, N. L.; Edelbrock, R. M.; Malinski, P. T.; Schofield, B. R.; Roberts, M. T.

10.1101/474312 — neuroscience — Posted on 2018-11-20

957 Structural and biochemical studies define Nudt12 as a new class of RNA deNADding enzyme in mammalian cells

Grudzien-Nogalska, E.; Wu, Y.; Jiao, X.; Cui, H.; Hart, R. P.; Tong, L.; Kiledjian, M.

10.1101/474478 — molecular biology — Posted on 2018-11-20

958 Reporters of TCR signaling identify arthritogenic T cells in murine and human autoimmune arthritis

Ashouri, J.; Hsu, L.-Y.; Chen, Y.; Yu, S.; Chang, D.; Hansen, E.; Lattanza, L.; Zikherman, J.; Weiss, A.

10.1101/474700 — immunology — Posted on 2018-11-20

959 Meeting the challenges of high-dimensional data analysis in immunology

Zielinski, C.; Theis, F.; Palit, S.

10.1101/473215 — immunology — Posted on 2018-11-20

960 Discovery and validation of candidate smoltification gene expression biomarkers across multiple species and ecotypes of Pacific salmonids

Houde, A. L. S.; Gunther, O. P.; Strohm, J.; Ming, T. J.; Li, S.; Patterson, D. A.; Farrell, A. P.; Hinch, S. G.; Miller, K. M.

10.1101/474692 — genomics — Posted on 2018-11-20

961 PCF11 connects alternative polyadenylation to formation and spontaneous regression of neuroblastoma

Ogorodnikov, A.; Levin, M.; Tattikota, S.; Tokalov, S.; Hoque, M.; Scherzinger, D.; Marini, F.; Poetsch, A.; Binder, H.; Macher-Goeppinger, S.; Tian, B.; Schaefer, M.; Lackner, K.; Westermann, F.; Danckwardt, S.

10.1101/426536 — genomics — Posted on 2018-11-20

962 Application of UV-cured resin as embedding/mounting media for practical, time-saving otolith specimen preparation

Strussmann, C. A.; Miyoshi, K.; Mitsui, S.

10.1101/474643 — ecology — Posted on 2018-11-20

963 Multi-Scale Structural Analysis of Proteins by Deep Semantic Segmentation

Eguchi, R. R.; Huang, P.-S.

10.1101/474627 — bioinformatics — Posted on 2018-11-20

964 Emergence of stable sensory and dynamic temporal representations in the hippocampus during working memory

Taxidis, J.; Pnevmatikakis, E.; Mylavarapu, A. L.; Arora, J. S.; Samadian, K. D.; Hoffberg, E. A.; Golshani, P.

10.1101/474510 — neuroscience — Posted on 2018-11-20

965 SLOPE: A two-part method for the enrichment of ring stage Plasmodium falciparum parasites

Brown, A. C.; Guler, J. L.

10.1101/474338 — microbiology — Posted on 2018-11-20

966 Population genomics and demographic sampling of the ant-plant Vachellia drepanolobium and its symbiotic ants from sites across its range in East Africa.

Boyle, J.; Martins, D.; Musili, P.; Pierce, N.

10.1101/475392 — ecology — Posted on 2018-11-20

967 Design of a GAK/EGFR inhibitor set to interrogate the relationship of EGFR and GAK in chordoma

Asquith, C.; Naegeli, K.; East, M. P.; Laitinen, T.; Havener, T. M.; Wells, C. I.; Johnson, G. L.; Drewry, D. H.; Zuercher, W. J.; Morris, D. C.

10.1101/475251 — pharmacology and toxicology — Posted on 2018-11-20

968 Genetic mechanisms of primary chemotherapy resistance in pediatric acute myeloid leukemia: A report from the TARGET initiative

10.1101/475376 — cancer biology — Posted on 2018-11-20

969 Dynamic networks of fighting and mating in a wild cricket population

Fisher, D.; Rodriguez-Munoz, R.; Tregenza, T.

10.1101/475087 — animal behavior and cognition — Posted on 2018-11-20

970 Inferring causal connectivity from pairwise recordings and optogenetics

Lepperod, M. E.; Stöber, T.; Hafting, T.; Fyhn, M.; Kording, K. P.

10.1101/463760 — neuroscience — Posted on 2018-11-20

971 A dynamic network model can explain temporal receptive fields in primary auditory cortex

Rahman, M.; Willmore, B. D. B.; King, A. J.; Harper, N. S.

10.1101/465047 — neuroscience — Posted on 2018-11-20

972 CRISPR-TSKO facilitates efficient cell type-, tissue-, or organ-specific mutagenesis in Arabidopsis

Decaestecker, W.; Andrade Buono, R.; Pfeiffer, M. L.; Vangheluwe, N.; Jourquin, J.; Karimi, M.; Van Isterdael, G.; Beeckman, T.; Nowack, M. K.; Jacobs, T. B.

10.1101/474981 — plant biology — Posted on 2018-11-20

973 CRISPR/Cas12a-assisted PCR tagging of mammalian genes

Fueller, J.; Meurer, M.; Herbst, K.; Gubicza, K.; Kurtulmus, B.; Knopf, J. D.; Kirrmaier, D.; Buchmuller, B.; Pereira, G.; Lemberg, M. K.; Knop, M.

10.1101/473876 — cell biology — Posted on 2018-11-20

974 Activation of Multiple Signalling Pathways by P152Lp53 Mutant Reveals New Gain-of-function Implicating Tumorigenesis

Singh, S.; Kumar, M.; Kumar, S.; Sen, S.; Upadhyay, P.; M, N.; Tomar, V. S.; Dutt, A.; Kundu, T.

10.1101/475293 — cancer biology — Posted on 2018-11-20

975 Neuroimaging supports the representational nature of the earliest human engravings

Mellet, E.; Salagnon, M.; Majkic, A.; Cremona, S.; Joliot, M.; Jobard, G.; Mazoyer, B.; Tzourio-Mazoyer, N.; d'Errico, F.

10.1101/464784 — neuroscience — Posted on 2018-11-20

976 CRISPR-based DNA and RNA detection with liquid phase separation

Spoelstra, W. K.; Jacques, J. M.; Nobrega, F. L.; Haagsma, A. C.; Dogterom, M.; Idema, T.; Brouns, S. J. J.; Reese, L.

10.1101/471482 — biophysics — Posted on 2018-11-20

977 The pro-oncogenic adaptor CIN85 inhibits hypoxia-inducible factor prolyl hydroxylase-2

Kozlova, N.; Mennerich, D.; Samoylenko, A.; Dimova, E. Y.; Koivunen, P.; Biterova, E.; Richter, K.; Hassinen, A.; Kellokumpu, S.; Manninen, A.; Miinalainen, I.; Glumoff, V.; Ruddock, L.; Drobot, L.; Kietzmann, T.

10.1101/466946 — biochemistry — Posted on 2018-11-20

978 Intrinsically disordered regions regulate both catalytic and non-catalytic activities of the MutLα mismatch repair complex.

Kim, Y.; Furman, C. M.; Manhart, C. M.; Alani, E.; Finkelstein, I. J.

10.1101/475152 — biochemistry — Posted on 2018-11-20

979 Synthesis, SAR and Docking Studies of Substituted Aryl phenylthiazolyl phenylcarboxamide as potential Protein Tyrosine Phosphatase 1B Inhibitors

Varshney, K.; Gupta, A. K.; Rawat, A.; Srivastava, R.; Mishra, A.; Saxena, M.; Srivastava, A. K.; Jain, S.; Saxena, A. K.

10.1101/472670 — pharmacology and toxicology — Posted on 2018-11-20

980 Rapid Brain Responses to Familiar vs. Unfamiliar Music - an EEG and Pupillometry study

Jagiello, R.; Pomper, U.; Yoneya, M.; Zhao, S.; Chait, M.

10.1101/466359 — neuroscience — Posted on 2018-11-20

981 A model of ganglion axon pathways accounts for percepts elicited by retinal implants

Beyeler, M.; Nanduri, D.; Weiland, J. D.; Rokem, A.; Boynton, G. M.; Fine, I.

10.1101/453035 — neuroscience — Posted on 2018-11-20

982 Fishing for Mitochondrial DNA in The Egyptian Sacred Ibis Mummies

Wasef, S.; Huynen, L.; Millar, C. D.; Subramanian, S.; Ikram, S.; Holland, B.; Willerslev, E.; Lambert, D. M.

10.1101/473454 — genomics — Posted on 2018-11-20

983 Onecut factors and Pou2f2 regulate the distribution of V2 interneurons in the mouse developing spinal cord

Harris, A.; Masgutova, G.; Collin, A.; Toch, M.; Hidalgo-Figueroa, M.; Jacob, B.; Corcoran, L. M.; Francius, C.; Clotman, F.

10.1101/413054 — developmental biology — Posted on 2018-11-20

984 GimmeMotifs: an analysis framework for transcription factor motif analysis

Bruse, N.; van Heeringen, S. J.

10.1101/474403 — bioinformatics — Posted on 2018-11-20

985 In for a pound, in for a penny: How the opportunity to gain reward influences the competition for memory resources

Talmi, D.; Kavaliauskaite, D.; Daw, N. D.

10.1101/464388 — neuroscience — Posted on 2018-11-20

986 Genome-wide co-localization of RNA-DNA interactions and fusion RNA pairs

Yan, Z.; Huang, N.; Wu, W.; Chen, W.; Jiang, Y.; Chen, J.; Huang, X.; Wen, X.; Xu, J.; Jin, Q.; Zhang, K.; Chen, Z.; Chien, S.; Zhong, S.

10.1101/472019 — genomics — Posted on 2018-11-20

987 The convergent evolution of eusociality is based on a shared reproductive groundplan plus lineage-specific sets of plastic genes

Warner, M. R.; Qiu, L.; Holmes, M. J.; Mikheyev, A. S.; Linksvayer, T. A.

10.1101/454645 — evolutionary biology — Posted on 2018-11-20

988 A balance between elastic and rigidified chromatin states regulates transcriptional plasticity at human centromeres

Melters, D. P.; Rakshit, T.; Pitman, M.; Bui, M.; Papoian, G. A.; Dalal, Y.

10.1101/392787 — biochemistry — Posted on 2018-11-20

989 Multivariate Computational Analysis of Gamma Delta T cell Inhibitory Receptor Signatures Reveals the Divergence of Healthy and ART-Suppressed HIV+ Aging

Belkina, A. C.; Starchenko, A.; Drake, K.; Proctor, E.; Pihl, R.; Olson, A.; Lauffenburger, D.; Lin, N.; Snyder-Cappione, J. E.

10.1101/412312 — immunology — Posted on 2018-11-20

990 The African Bullfrog (Pyxicephalus adspersus) genome unites the two ancestral ingredients for making vertebrate sex chromosomes

Denton, R. D.; Kudra, R. S.; Malcom, J. W.; Du Preez, L.; Malone, J. H.

10.1101/329847 — genomics — Posted on 2018-11-20

991 The natural selection of metabolism explains curvature in fossil body mass evolution

Witting, L.

10.1101/088997 — evolutionary biology — Posted on 2018-11-20

992 Learning unsupervised feature representations for single cell microscopy images with paired cell inpainting

Lu, A.; Kraus, O. Z.; Cooper, S.; Moses, A. M.

10.1101/395954 — bioinformatics — Posted on 2018-11-20

993 Does the interaction between partnership status and average progesterone level predict women’s preferences for facial masculinity?

DeBruine, L. M.; Hahn, A.; Jones, B.

10.1101/376350 — animal behavior and cognition — Posted on 2018-11-20

994 RUPEE: A fast and accurate purely geometric proteinstructure search

Ayoub, R.; Lee, Y.

10.1101/475301 — bioinformatics — Posted on 2018-11-20

995 Weight statistics controls dynamics in recurrent neural networks

Krauss, P.; Schuster, M.; Dietrich, V.; Schilling, A.; Schulze, H.; Metzner, C.

10.1101/475319 — neuroscience — Posted on 2018-11-20

996 Spatio-temporal dynamics of dengue in Brazil: seasonal travelling waves and determinants of regional synchrony

Churakov, M.; Villabona-Arenas, C. J.; Kraemer, M. U. G.; Salje, H.; Cauchemez, S.

10.1101/475335 — epidemiology — Posted on 2018-11-20

997 Mathematical Modeling Reveals the Factors Involved in the Phenomena of Cancer Stem Cells Stabilization

Morozova, N.; Bessonov, N.; Pinna, G.; Minarsky, A.; Harel-Bellan, A.

10.1101/475285 — cancer biology — Posted on 2018-11-20

998 Mechanistic insights from replica exchange molecular dynamics simulations into mutation induced disordered-to-ordered transition in Hahellin, a βγ-crystallin

Patel, S.; Krishnan, B.; Hosur, R. V.; Chary, K. V. R.

10.1101/475277 — biophysics — Posted on 2018-11-20

999 Metagenomic Insights Unveil the Dominance of Undescribed Actinobacteria in Pond Ecosystem of an Indian Shrine

Manikkam, R.; Imchen, M.; Kaari, M.; Vignesh, A.; Gopikrishnan, V.; Shanmugasundaram, T.; Joseph, J.; Balaguruanthan, R.; Kumavath, R.

10.1101/475269 — microbiology — Posted on 2018-11-20

1000 Diagnostic outcomes of exome gene panel sequencing in patients with unusual syndromic cleft lip/palate phenotypes

Jabalameli, R.

10.1101/465179 — genomics — Posted on 2018-11-20

1001 Modulating hinge flexibility in the APP transmembrane domain alters γ-secretase cleavage

Goetz, A.; Mylonas, N.; Hoegel, P.; Silber, M.; Heinel, H.; Menig, S.; Vogel, A.; Freyrer, H.; Huster, D.; Luy, B.; Langosch, D.; Scharnagl, C.; Muhle-Goll, C.; Kamp, F.; Steiner, H.

10.1101/375006 — biophysics — Posted on 2018-11-20

1002 Every which way? On predicting tumor evolution using cancer progression models

Diaz-Uriarte, R.; Vasallo, C.

10.1101/371039 — bioinformatics — Posted on 2018-11-20

1003 Genomic determinants of sympatric speciation of the Mycobacterium tuberculosis complex across evolutionary timescales.

Chiner-Oms, A.; Sanchez-Buso, L.; Corander, J.; Gagneux, S.; Harris, S.; Young, D.; Gonzalez-Candelas, F.; Comas, I.

10.1101/314559 — evolutionary biology — Posted on 2018-11-20

1004 bmotif: a package for motif analyses of bipartite networks

Simmons, B. I.; Sweering, M. J. M.; Schillinger, M.; Dicks, L. V.; Sutherland, W. J.; Di Clemente, R.

10.1101/302356 — ecology — Posted on 2018-11-20

1005 Is the predation risk of mate-searching different between the sexes?

Torsekar, V. R.; Isvaran, K.; Balakrishnan, R.

10.1101/363507 — ecology — Posted on 2018-11-20

1006 Hi-C yields chromosome-length scaffolds for a legume genome, Trifolium subterraneum

Dudchenko, O.; Pham, M.; Lui, C.; Batra, S. S.; Hoeger, M.; Nyquist, S. K.; Durand, N. C.; Shamim, M. S.; Machol, I.; Erskine, W.; Aiden, E. L.; Kaur, P.

10.1101/473553 — genomics — Posted on 2018-11-20

1007 Convergent evolution as an indicator for selection during acute HIV-1 infection

Bertels, F.; Metzner, K. J.; Regoes, R. R.

10.1101/168260 — evolutionary biology — Posted on 2018-11-20

1008 Molecular phylogenetics supports a clade of red algal parasites retaining native plastids: taxonomy and terminology revised

Salomaki, E. D.; Lane, C. E.

10.1101/182709 — evolutionary biology — Posted on 2018-11-20

1009 Osteocyte death and bone overgrowth in mice lacking Fibroblast Growth Factor Receptors 1 and 2 in mature osteoblasts and osteocytes

McKenzie, J.; Smith, C.; Karuppaiah, K.; Langberg, J.; Silva, M. J.; Ornitz, D. M.

10.1101/474502 — developmental biology — Posted on 2018-11-20

1010 Modulation of RNA-dependent interactions in stress granules prevents persistent TDP-43 accumulation in ALS/FTD

Fang, M. Y.; Markmiller, S.; Dowdle, W. E.; Vu, A. Q.; Bushway, P. J.; Ding, S.; Mercola, M. M.; Lewcock, J. W.; Yeo, G.

10.1101/474577 — neuroscience — Posted on 2018-11-20

1011 Pan-Cancer Repository of Validated Natural and Cryptic mRNA Splicing Mutations

Shirley, B. C.; Mucaki, E. J.; Rogan, P. K.

10.1101/474452 — genomics — Posted on 2018-11-20

1012 Elucidating the H+ coupled Zn2+ transport mechanism of ZIP4; implications in Acrodermatitis Enteropathica

Hoch, E.; Sekler, I.

10.1101/474528 — physiology — Posted on 2018-11-20

1013 Annotations capturing cell-type-specific TF binding explain a large fraction of disease heritability

van de Geijn, B.; Finucane, H.; Gazal, S.; Hormozdiari, F.; Amariuta, T.; Liu, X.; Gusev, A.; Loh, P.-R.; Reshef, Y.; Kichaev, G.; Raychauduri, S.; Price, A.

10.1101/474684 — genetics — Posted on 2018-11-20

1014 In Silico Determined Properties of Designed Superoxide Dismutase-1 Mutants Predict ALS-like Phenotypes In Vitro and In Vivo

DuVal, M. G.; McAlary, L.; Habibi, M.; Garg, P.; Sher, M.; Cashman, N.; Allison, T. T.; Plotkin, S. S.

10.1101/474585 — biophysics — Posted on 2018-11-20

1015 Distributed correlates of visually-guided behavior across the mouse brain

Steinmetz, N.; Zatka-Haas, P.; Carandini, M.; Harris, K.

10.1101/474437 — neuroscience — Posted on 2018-11-20

1016 Soil nutrient adequacy for optimal cassava growth, implications on cyanogenic glucoside production: a case of konzo-affected Mtwara region, Tanzania

Imakumbili, M. L. E.; Semu, E.; Semoka, J. M. R.; Abass, A.; Mkamilo, G.

10.1101/464594 — pharmacology and toxicology — Posted on 2018-11-19

1017 Homeostatic remodeling of mammalian membranes in response to dietary lipids is essential for cellular fitness

Levental, K. R.; Malmberg, E.; Ernst, R.; Levental, I.

10.1101/342873 — cell biology — Posted on 2018-11-19

1018 A comparison of bivariate frequency domain measures of electrophysiological connectivity

Pascual-Marqui, R. D.; Faber, P.; Kinoshita, T.; Kochi, K.; Milz, P.; Nishida, K.; Yoshimura, M.

10.1101/459503 — neuroscience — Posted on 2018-11-19

1019 VariantKey - A Reversible Numerical Representation of Human Genetic Variants

Asuni, N.

10.1101/473744 — bioinformatics — Posted on 2018-11-19

1020 Unattended but actively stored: EEG dynamics reveal a dissociation between selective attention and storage in working memory

Gunseli, E.; Fahrenfort, J. J.; van Moorselaar, D.; Daoultzis, K. C. C.; Meeter, M.; Olivers, C. N. L.

10.1101/320952 — neuroscience — Posted on 2018-11-19

1021 A novel generic dictionary-based denoising method for improving noisy and densely packed nuclei segmentation in 3D time-lapse fluorescence microscopy images

Nasser, L.; Boudier, T.

10.1101/371641 — cell biology — Posted on 2018-11-19

1022 A proactive genotype-to-patient-phenotype map for cystathionine beta-synthase

Sun, S.; Weile, J.; Verby, M.; Cote, A. G.; Wu, Y.; Fotiadou, I.; Kitaygorodsky, J.; Rine, J.; Jesina, P.; Kozich, V.; Roth, F. P.

10.1101/473983 — genetics — Posted on 2018-11-19

1023 Understanding the evolution of anisogamy in the early diverging fungus, Allomyces

Phadke, S.; Rupp, S.; Wilson Sayres, M.

10.1101/230292 — evolutionary biology — Posted on 2018-11-19

1024 The idiosyncratic drivers of correlated evolution

Dench, J.; Aris-Brosou, S.; Kassen, R.

10.1101/474536 — bioinformatics — Posted on 2018-11-19

1025 Nonlinear Effects of Intraspecific Competition Alter Landscape-Wide Upscaling of Ecosystem Function

Little, C. J.; Fronhofer, E. A.; Altermatt, F.

10.1101/470591 — ecology — Posted on 2018-11-19

1026 polyRAD: Genotype calling with uncertainty from sequencing data in polyploids and diploids

Clark, L. V.; Lipka, A. E.; Sacks, E. J.

10.1101/380899 — bioinformatics — Posted on 2018-11-19

1027 Unattended but actively stored: EEG dynamics reveal a dissociation between selective attention and storage in working memory

Gunseli, E.; Fahrenfort, J. J.; van Moorselaar, D.; Daoultzis, K. C. C.; Meeter, M.; Olivers, C. N. L.

10.1101/320952 — neuroscience — Posted on 2018-11-19

1028 A splice donor variant in CCDC189 is associated with asthenospermia in Nordic Red dairy cattle

Iso-Touru, T.; Wurmser, C.; Venhoranta, H.; Hiltpold, M.; Savolainen, T.; Sironen, A.; Fischer, K.; Flisikowski, K.; Fries, R.; Vicente-Carrillo, A.; Alvarez-Rodriguez, M.; Nagy, S.; Mutikainen, M.; Peippo, J.; Taponen, J.; Sahana, G.; Guldbrandtsen, B.; Simonen, H.; Rodriguez-Martinez, H.; Andersson, M.; Pausch, H.

10.1101/472282 — genomics — Posted on 2018-11-19

1029 Attentional Bias Modification is associated with fMRI Response towards Negative Stimuli in Residual Depression: A Randomized Controlled Trial

Hilland, E.; Landro, N. I.; Harmer, C.; Browning, M.; Maglanoc, L. A.; Jonassen, R.

10.1101/322842 — clinical trials — Posted on 2018-11-19

1030 Parallel genetic evolution and speciation from standing variation

Thompson, K. A.; Osmond, M. M.; Schluter, D.

10.1101/368324 — evolutionary biology — Posted on 2018-11-19

1031 Dispersal predicts hybrid zone widths across animal diversity: Implications for species borders under incomplete reproductive isolation

McEntee, J. P.; Burleigh, J. G.; Singhal, S.

10.1101/472506 — ecology — Posted on 2018-11-19

1032 Genome-wide co-localization of RNA-DNA interactions and fusion RNA pairs

Yan, Z.; Huang, N.; Wu, W.; Chen, W.; Jiang, Y.; Chen, J.; Huang, X.; Wen, X.; Xu, J.; Jin, Q.; Zhang, K.; Chen, Z.; Chien, S.; Zhong, S.

10.1101/472019 — systems biology — Posted on 2018-11-19

1033 Distinct neural mechanisms meet challenges in dynamic visual attention due to either load or spatial interference

Maki-Marttunen, V.; Hagen, T.; Laeng, B.; Espeseth, T.

10.1101/472209 — neuroscience — Posted on 2018-11-19

1034 Competition in biofilms between cystic fibrosis isolates of Pseudomonas aeruginosa is influenced by R-pyocins

Oluyombo, O.; Penfold, C. N.; Diggle, S. P.

10.1101/264580 — microbiology — Posted on 2018-11-19

1035 Cell growth dilutes the cell cycle inhibitor Rb to trigger cell division

Zatulovskiy, E.; Berenson, D. F.; Topacio, B. R.; Skotheim, J. M.

10.1101/470013 — cell biology — Posted on 2018-11-19

1036 Reducing RF-Induced Heating Near Implanted Leads Through High-Dielectric Capacitive Bleeding of Current (CBLOC)

Golestanirad, L.; Angelone, L. M.; Kirsch, J.; Downs, S.; Keil, B.; Bonmassar, G.; Wald, L. L.

10.1101/456533 — biophysics — Posted on 2018-11-19

1037 Overlaps in Brain Dynamical Functional Connectivity between Schizophrenia and Autism Spectrum Disorder

Andriamananjara, A.; Muntari, R.; Crimi, A.

10.1101/385146 — neuroscience — Posted on 2018-11-19

1038 Reconciling S-LDSC and LDAK models and functional enrichment estimates

Gazal, S.; Marquez-Luna, C.; Finucane, H. K.; Price, A. L.

10.1101/256412 — genetics — Posted on 2018-11-19

1039 CrRLK1L receptor-like kinases HERK1 and ANJEA are female determinants of pollen tube reception

Galindo-Trigo, S.; Blanco-Tourinan, N.; DeFalco, T. A.; Zipfel, C.; Gray, J. E.; Smith, L. M.

10.1101/428854 — genetics — Posted on 2018-11-19

1040 Convolutional models of RNA energetics

Wu, M. J.

10.1101/470740 — biophysics — Posted on 2018-11-19

1041 Multiple mechanisms link prestimulus neural oscillations to sensory responses

Iemi, L.; Busch, N. A.; Laudini, A.; Samaha, J.; Villringer, A.; Nikulin, V. V.

10.1101/461558 — neuroscience — Posted on 2018-11-19

1042 Xenopus hybrids provide insight into cell and organism size control

Gibeaux, R.; Miller, K.; Acker, R.; Kwon, T.; Heald, R.

10.1101/395814 — developmental biology — Posted on 2018-11-19

1043 Binding From both sides: TolR and full-length OmpA bind and maintain the local structure of the E. coli cell wall

Boags, A.; Samsudin, F.; Khalid, S.

10.1101/409466 — biophysics — Posted on 2018-11-19

1044 Measuring cis-regulatory energetics in living cells using allelic manifolds

Forcier, T.; Ayaz, A.; Gill, M. S.; Jones, D.; Phillips, R.; Kinney, J. B.

10.1101/380972 — biophysics — Posted on 2018-11-19

1045 Oscillations in spontaneous and visually evoked neuronal activity in the superficial layers of the cat’s superior colliculus

Foik, A. T.; Ghazaryan, A.; Waleszczyk, W. J.

10.1101/347799 — neuroscience — Posted on 2018-11-19

1046 Integration of accessibility data from structure probing into RNA-RNA interaction prediction

Miladi, M.; Montaseri, S.; Backofen, R.; Raden, M.

10.1101/359323 — bioinformatics — Posted on 2018-11-19

1047 Conditioning by Subthreshold Synaptic Input Changes the Characteristic Firing Pattern of CA3 Hippocampal Neurons

Soldado-Magraner, S.; Brandalise, F.; Honnuraiah, S.; Pfeiffer, M.; Gerber, U.; Douglas, R.

10.1101/084152 — neuroscience — Posted on 2018-11-19

1048 Spatial transcriptomics and in silico random pooling identify novel markers of vulnerable and resistant dopamine neurons

Aguila, J.; Cheng, S.; Kee, N.; Cao, M.; Deng, Q.; Hedlund, E.

10.1101/334417 — neuroscience — Posted on 2018-11-19

1049 Controlling complex microbial communities: a network-based approach

Angulo, M. T.; Moog, C. H.; Liu, Y.-Y.

10.1101/149765 — microbiology — Posted on 2018-11-19

1050 Emotional prosody in congenital amusia: impaired and spared processes

Pralus, A.; Fornoni, L.; Bouet, R.; Gomot, M.; Bhatara, A.; Tillmann, B.; Caclin, A.

10.1101/466748 — neuroscience — Posted on 2018-11-19

1051 Identifying sensor species to predict critical transitions in complex ecosystems

Aparicio, A.; Velasco, J. X.; Moog, C. H.; Liu, Y.-Y.; Angulo, M. T.

10.1101/472878 — ecology — Posted on 2018-11-19

1052 A novel somatosensory spatial navigation system outside the hippocampal formation

Long, X.; Zhang, S.-J.

10.1101/473090 — neuroscience — Posted on 2018-11-19

1053 Suicidal ideation and intentional self-harm in pregnancy as neglected agenda in maternal health; an experience from rural Sri Lanka

Mallawa Archchi, N. S. S.; Ganegama, R.; Husna, A. W. F.; Chandima, D. L.; Hettigama, N.; Herath, J.; Premadasa, J.; Ranaweera, H.; Agampodi, T. C.; Agampodi, S. B.

10.1101/473058 — epidemiology — Posted on 2018-11-19

1054 Apolipoprotein E interacts with amyloid-β oligomers via positively cooperative multivalent binding

Garai, K.; Ghosh, S.; Sil, T. B.; Dolai, S.

10.1101/473892 — biochemistry — Posted on 2018-11-19

1055 Glucocorticoids inhibit macrophage differentiation towards a pro-inflammatory phenotype upon wounding without affecting their migration

Xie, Y.; Tolmeijer, S.; Oskam, J.; Tonkens, T.; Meijer, A. H.; Schaaf, M. J. M.

10.1101/473926 — immunology — Posted on 2018-11-19

1056 Strenuous occupational physical activity - potential association with esophageal squamous cell carcinoma risk

Shah, I. A.; Bhat, G. A.; Rafiq, R.; NIssa, N.; Muzaffar, M.; Rasool, M. T.; Banday, A. R.; Lone, M. M.; Lone, G. N.; Boffetta, P.; Dar, N.

10.1101/469452 — epidemiology — Posted on 2018-11-19

1057 Birth weight is not causally associated with adult asthma: results from instrumental variable analyses

Zeng, P.; Yu, X.; Zhou, X.

10.1101/471425 — epidemiology — Posted on 2018-11-19

1058 APOBEC-mediated DNA alterations: a possible new mechanism of carcinogenesis in EBV-positive gastric cancer

Bobrovnitchaia, I.; Valieris, R.; Drummond, R.; Lima, J.; Freitas, H.; Bartelli, T.; Amorin, M.; Nunes, D.; Dias-Neto, E.; Silva, I.

10.1101/473884 — cancer biology — Posted on 2018-11-19

1059 How does cilium length affect beating?

Bottier, M.; Thomas, K. A.; Dutcher, S. K.; Bayly, P. V.

10.1101/474346 — biophysics — Posted on 2018-11-19

1060 A database of egg size and shape from more than 6,700 insect species

Church, S. H.; Donoughe, S.; de Medeiros, B. A. D.; Extavour, C. G.

10.1101/471953 — evolutionary biology — Posted on 2018-11-19

1061 Guiding Interoperable Electronic Health Records Through Patient Sharing Networks

Clarke, J. M.; Warren, L.; Arora, S.; Barahona, M.; Darzi, A.

10.1101/473272 — epidemiology — Posted on 2018-11-19

1062 Lower hemoglobin levels associate with lower body mass index and healthier metabolic profile

Auvinen, J.; Tapio, J.; Karhunen, V.; Kettunen, J.; Serpi, R.; Dimova, E. Y.; Soininen, P.; Tammelin, T.; Mykkanen, J.; Puukka, K.; Kahonen, M.; Raitoharju, E.; Lehtimaki, T.; Ala-Korpela, M.; Raitakari, O. T.; Keinanen-Kiukaanniemi, S.; Jarvelin, M.-R.; Koivunen, P.

10.1101/472142 — epidemiology — Posted on 2018-11-19

1063 Impacts of thermal mismatches on chytrid fungus Batrachochytrium dendrobatidis prevalence are moderated by life stage, body size, elevation and latitude

Cohen, J.; McMahon, T.; Ramsay, C.; Roznik, E.; Sauer, E.; Bessler, S.; Civitello, D.; Delius, B.; Halstead, N.; Knutie, S.; Nguyen, K.; Ortega, N.; Sears, B.; Venesky, M.; Young, S.; Rohr, J.

10.1101/473934 — ecology — Posted on 2018-11-19

1064 A kinesin Klp10A mediates cell cycle-dependent shuttling of Piwi between nucleus and nuage

Venkei, Z. G.; Choi, C. P.; Feng, S.; Jacobsen, S. E.; Kim, J. K.; Yamashita, Y. M.

10.1101/474049 — developmental biology — Posted on 2018-11-19

1065 Topical cream with live lactobacilli modulates the skin microbiome and reduce acne symptoms

Lebeer, S.; Oerlemans, E.; Claes, I.; Wuyts, S.; Henkens, T.; Spacova, I.; van den Broek, M.; Tuyaerts, I.; Wittouck, S.; De Boeck, I.; Allonsius, C.; Kiekens, F.; Lambert, J.

10.1101/463307 — clinical trials — Posted on 2018-11-19

1066 Tethered Bichromophoric Fluorophore Quencher Voltage Sensitive Dyes

Yan, P.; Acker, C.; Loew, L. M.

10.1101/473843 — biophysics — Posted on 2018-11-19

1067 Consensus clustering of herpesvirus protein interaction networks provides insights into their evolutionary relationship with bacteriophages

Hernandez Duran, A.; Greco, T. M.; Vollmer, B.; Cristea, I. M.; Grünewald, K.; Topf, M.

10.1101/473751 — bioinformatics — Posted on 2018-11-19

Kosel, F.; Torres Munoz, P.; Yang, J. R.; Wong, A. A.; Franklin, T. B.

10.1101/471714 — neuroscience — Posted on 2018-11-19

1069 Detecting and Correcting False Transients in Calcium Imaging

Gauthier, J. L.; Koay, S. A.; Nieh, E. H.; Tank, D. W.; Pillow, J. W.; Charles, A. S.

10.1101/473470 — neuroscience — Posted on 2018-11-19

1070 The distribution of antibiotic use and its association with antibiotic resistance

Olesen, S. W.; Barnett, M. L.; MacFadden, D. R.; Brownstein, J. S.; Hernandez-Diaz, S.; Lipsitch, M.; Grad, Y. H.

10.1101/473769 — epidemiology — Posted on 2018-11-19

1071 Evaluating causal associations between previously reported risk factors and epithelial ovarian cancer: a Mendelian randomization analysis

Yarmolinsky, J.; Relton, C. L.; Lophatananon, A.; Muir, K.; Menon, U.; Gentry-Maharaj, A.; Walther, A.; Zheng, J.; Fasching, P.; Zheng, W.; Woo, Y. L.; Chang-Claude, J.; Modugno, F.; Park, S. K.; Kim, B.-G.; Choi, J.-Y.; Park, B.; Davey Smith, G.; Martin, R.; Lewis, S.

10.1101/472696 — epidemiology — Posted on 2018-11-19

1072 VariantKey - A Reversible Numerical Representation of Human Genetic Variants

Asuni, N.

10.1101/473744 — bioinformatics — Posted on 2018-11-19

1073 Efforful verb recollection drives beta suppression in mesial frontal regions involved in action initiation.

Pavlova, A. A.; Butorina, A. V.; Nikolaeva, A. Y.; Prokofyev, A. O.; Ulanov, M. A.; Bondarev, D. P.; Stroganova, T. A.

10.1101/473355 — neuroscience — Posted on 2018-11-19

1074 Dimensional Anhedonia and the Adolescent brain: Reward and Aversion Anticipation, Effort and Consummation.

Rzepa, E.; McCabe, C.

10.1101/473835 — neuroscience — Posted on 2018-11-19

1075 Cognitive and white-matter compartment models revealed the contribution of microstructural variability along sensorimotor tracts to simple reaction time

Karahan, E.; Costigan, A. G.; Graham, K. S.; Lawrence, A. D.; Zhang, J.

10.1101/473660 — neuroscience — Posted on 2018-11-19

1076 Rewiring of Th-memory-associated gene co-expression networks underlie immunotherapy-induced changes in symptom expression in mite-sensitised atopics

Jones, A. C.; Anderson, D.; Troy, N. M.; Mallon, D.; Hartmann, R.; Serralha, M.; Holt, B. J.; Bosco, A.; Holt, P. G.

10.1101/473561 — immunology — Posted on 2018-11-19

1077 Association between Apolipoprotein E genotype and the gut microbiome composition in humans and mice

Tran, T. T. T.; Corsini, S.; Kellingray, L.; Hegarty, C.; Le Gall, G.; Narbad, A.; Müller, M.; O'Toole, P. W.; Minihane, A.-M.; Vauzour, D.

10.1101/473694 — genomics — Posted on 2018-11-19

1078 Prospective real-time metagenomic sequencing during norovirus outbreak reveals discrete transmission clusters

Casto, A. M.; Adler, A. L.; Makhsous, N.; Crawford, K.; Qin, X.; Kuypers, J. M.; Huang, M.-L.; Zerr, D. M.; Greninger, A. L.

10.1101/473405 — genomics — Posted on 2018-11-19

1079 Evidence of reduced viremia, pathogenicity and vector competence in a re-emerging European strain of bluetongue virus serotype 8 in sheep

Flannery, J.; Sanz-Bernardo, B.; Ashby, M.; Brown, H.; Carpenter, S.; Cooke, L.; Corla, A.; Frost, L.; Gubbins, S.; Hicks, H.; Qureshi, M.; Rajko-Nenow, P.; Sanders, C.; Tully, M.; Breard, E.; Sailleau, C.; Zientara, S.; Darpel, K.; Batten, C.

10.1101/469460 — epidemiology — Posted on 2018-11-19

1080 Eliminating yellow fever epidemics in Africa: vaccine demand forecast and impact modelling

Jean, K.; Hamlet, A.; Benzler, J.; Cibrelus, L.; Gaythorpe, K. A. M.; Sall, A.; Ferguson, N. M.; Garske, T.

10.1101/468629 — epidemiology — Posted on 2018-11-19

1081 Spatial scale moderates the shape of the biodiversity-disease relationship

Halliday, F.; Rohr, J. R.

10.1101/472902 — ecology — Posted on 2018-11-19

1082 Prolactin Receptor Signaling Regulates a Pregnancy-Specific Transcriptional Program in Mouse Islets

Pepin, M. E.; Wende, A. R.; Banerjee, R. R.

10.1101/474023 — bioinformatics — Posted on 2018-11-19

1083 The expendable male hypothesis

Mattison, S.; Quinlan, R. J.; Hare, D.

10.1101/473942 — animal behavior and cognition — Posted on 2018-11-19

1084 Race modifies default mode network connectivity in Alzheimer’s disease

Misiura, M.; Wu, J.; Qiu, D.; Howell, J.; Parker, M.; Turner, J. A.; Hu, W. T.

10.1101/472910 — neuroscience — Posted on 2018-11-19

1085 DeepFLaSh, a deep learning pipeline for segmentation of fluorescent labels in microscopy images

Segebarth, D.; Griebel, M.; Duerr, A.; R. von Collenberg, C.; Martin, C.; Fiedler, D.; Comeras, L. B.; Sah, A.; Stein, N.; Gupta, R.; Sasi, M.; Lange, M. D.; Tasan, R. O.; Singewald, N.; Pape, H.-C.; Sendtner, M.; Flath, C. M.; Blum, R.

10.1101/473199 — neuroscience — Posted on 2018-11-19

1086 Exploration of Sensory and Spinal Neurons Expressing GRP in Itch and Pain

Barry, D. M.; Liu, X.-T.; Yang, Q.; Liu, X.-Y.; Zeng, X.; Liu, B.-L.; Chen, Z.-F.

10.1101/472886 — neuroscience — Posted on 2018-11-19

1087 Bite size of Caenorhabditis elegans regulates feeding, satiety and development on yeast diet

De, A.; Sahu, A. K.; Singh, V.

10.1101/473256 — microbiology — Posted on 2018-11-19

1088 Improved TGIRT-seq methods for comprehensive transcriptome profiling with decreased adapter dimer formation and bias correction

Xu, H.; Yao, J.; Wu, D. C. K.; Lambowitz, A. M.

10.1101/474031 — genomics — Posted on 2018-11-19

1089 Chromatin Accessibility Plays a Key Role in Selective Targeting of Hox Proteins

Porcelli, D.; Fischer, B.; Russell, S.; White, R.

10.1101/473850 — genomics — Posted on 2018-11-19

1090 Genetic variation in the Major Histocompatibility Complex and association with depression

Glanville, K. P.; Coleman, J. R. I.; Hanscombe, K. B.; Euesden, J.; Choi, S. W.; Purves, K. L.; Breen, G.; Air, T. M.; Andlauer, T. F. M.; Baune, B. T.; Binder, E. B.; Blackwood, D. H. R.; Boomsma, D. I.; Buttenschon, H. N.; Colodro-Conde, L.; Dannlowski, U.; Direk, N.; Dunn, E. C.; Forstner, A. J.; de Geus, E. J. C.; Grabe, H. J.; Hamilton, S. P.; Jones, I.; Jones, L. A.; Knowles, J. A.; Kutalik, Z.; Levinson, D. F.; Lewis, G.; Lind, P. A.; Lucae, S.; Magnusson, P. K.; McGuffin, P.; McIntosh, A. M.; Milaneschi, Y.; Mors, O.; Mostafavi, S.; Müller-Myhsok, B.; Pedersen, N. L.; Penninx, B. W. J

10.1101/469023 — genetics — Posted on 2018-11-19

1091 Multiplexed pooled library screening with Cpf1

Liu, J.; Sanjana, S.; Li, C.-Y.; Ho, I.-L.; Wang, G.; Yao, W.; Deem, A. K.; Bristow, C.; Hart, T.; Draetta, G.

10.1101/473959 — systems biology — Posted on 2018-11-19

1092 Increased and decreased superficial white matter structural connectivity in schizophrenia and bipolar disorder

Ji, E.; Guevara, P.; Guevara, M.; Grigis, A.; Labra, N.; Sarrazin, S.; Hamdani, N.; Bellivier, F.; Delavest, M.; Leboyer, M.; Tamouza, R.; Poupon, C.; Mangin, J.-F.; Houenou, J.

10.1101/473686 — neuroscience — Posted on 2018-11-19

1093 Genotyping of Salmonella spp. on the basis of CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats).

JIKSING, C.; YUSOP, N.; NASIB, F. N.; RODRIGUES, K. F.

10.1101/473868 — microbiology — Posted on 2018-11-19

1094 Factors associated with sharing email information and mental health survey participation in two large population cohorts

Adams, M.; Hill, W. D.; Howard, D. M.; Davis, K. A. S.; Deary, I. J.; Hotopf, M.; McIntosh, A. M.

10.1101/471433 — genetics — Posted on 2018-11-19

1095 A clinal polymorphism in the insulin signaling transcription factor foxo contributes to life-history adaptation in Drosophila

Durmaz, E.; Rajpurohit, S.; Betancourt, N.; Fabian, D. K.; Kapun, M.; Schmidt, P.; Flatt, T.

10.1101/473231 — evolutionary biology — Posted on 2018-11-19

1096 Harmful algae bloom monitoring via a sustainable, sail-powered mobile platform for in-land and coastal monitoring

Beckler, J.; Arutunian, E.; Currier, R.; Milbrandt, E.; Duncan, S.

10.1101/473827 — ecology — Posted on 2018-11-19

1097 Leveraging collective regulatory effects of long-range DNA methylations to predict gene expressions and estimate their effects on phenotypes in cancer

Kim, S.; Park, H. J.; Cui, X.; Zhi, D.

10.1101/472589 — bioinformatics — Posted on 2018-11-19

1098 Evaluating Clinical Benefit in I-SPY 2

Basu, A.; Melisko, M.; Esserman, L. J.

10.1101/473447 — bioinformatics — Posted on 2018-11-19

1099 Sustaining yam yields amidst climate threat in the forest - savannah transition zone of Ghana

Frimpong, F.; Owusu Danquah, E.; Ennin, S. A.; Asumadu, H.; Aidoo, A. K.; Maroya, N.

10.1101/474247 — plant biology — Posted on 2018-11-19

1100 Origin of the mobile di-hydro-pteroate synthase gene determining sulfonamide resistance in clinical isolates

Sanchez-Osuna, M.; Cortes, P.; Barbe, J.; Erill, I.

10.1101/472472 — microbiology — Posted on 2018-11-19

1101 RADAR: annotation and prioritization of variants in the post-transcriptional regulome of RNA-binding proteins

Zhang, J.; Liu, J.; Lee, D.; Feng, J.-J.; Lochovsky, L.; Lou, S.; Rutenberg-Schoenberg, M.; Gerstein, M.

10.1101/474072 — genomics — Posted on 2018-11-19

1102 Long-term population studies uncover the genome structure and genetic basis of xenobiotic and host plant adaptation in the herbivore Tetranychus urticae

Clark, R. M.; Van Leeuwen, T.; Wybouw, N.; Kosterlitz, O.; Kurlovs, A. H.; Bajda, S.; Bryon, A.; Greenhalgh, R.; Snoeck, S.; Bui, H.; Dermauw, W.

10.1101/474064 — genetics — Posted on 2018-11-19

1103 Reproduction and longevity A Mendelian randomization study of gonadotropin-releasing hormone and ischemic heart disease

Schooling, C.; Ng, J.

10.1101/472548 — evolutionary biology — Posted on 2018-11-19

1104 Rac-dependent signaling from keratinocytes promotes differentiation of intradermal white adipocytes

Ueyama, T.; Sakuma, M.; Nakatsuji, M.; Uebi, T.; Hamada, T.; Aiba, A.; Saito, N.

10.1101/474056 — cell biology — Posted on 2018-11-19

1105 Optogenetic and transcriptomic interrogation of enhanced muscle function in the paralyzed mouse whisker pad

Vajtay, T. J.; Bandi, A.; Upadhyay, A.; Swerdel, M. R.; Hart, R. P.; Lee, C. R.; Margolis, D. J.

10.1101/473298 — neuroscience — Posted on 2018-11-19

1106 SYNPLA: A synapse-specific method for identifying learning-induced synaptic plasticity loci

Dore, K.; Pao, Y.; Soria Lopez, J.; Aronson, S.; Zhan, H.; Ghosh, S.; Merrill, S.; Zador, A. M.; Malinow, R.; Kebschull, J. M.

10.1101/473314 — neuroscience — Posted on 2018-11-19

1107 Trypanosoma brucei Pex13.2 is an accessory peroxin that functions in the import of PTS2 proteins and localizes to subdomains of the glycosome

Crowe, L.; Nicholson, K.; Wilkinson, C.; Morris, M. T.

10.1101/474080 — cell biology — Posted on 2018-11-19

1108 Overly strong priors for socially meaningful visual signals in psychosis proneness

Stuke, H.; Kress, E.; Weilnhammer, V. A.; Sterzer, P.; Schmack, K.

10.1101/473421 — neuroscience — Posted on 2018-11-19

1109 A spatial code in the dorsal lateral geniculate nucleus.

Hok, V.; Jacob, P.-Y.; Bordiga, P.; Truchet, B.; Poucet, B.; Save, E.

10.1101/473520 — neuroscience — Posted on 2018-11-19

1110 A meta-analysis of Entamoeba histolytica/dispar in Iraq

Chalabi, K. N.

10.1101/435495 — epidemiology — Posted on 2018-11-19

1111 Do Deep Neural Networks Outperform Kernel Regression for Functional Connectivity Prediction of Behavior?

He, T.; Kong, R.; Holmes, A.; Nguyen, M.; Sabuncu, M.; Eickhoff, S. B.; Bzdok, D.; Feng, J.; Yeo, B. T. T.

10.1101/473603 — neuroscience — Posted on 2018-11-19

1112 Identification of novel differentially methylated sites with potential as clinical predictors of impaired respiratory function and COPD

Bermingham, M. L.; Walker, R. M.; Marioni, R. E.; Morris, S. M.; Rawlik, K.; Zeng, Y.; Campbell, A.; Redmond, P.; Whalley, H. C.; Adams, M. J.; Hayward, C.; Deary, I. J.; Porteous, D. J.; McIntosh, A. M.; Evans, K. L.

10.1101/473629 — genomics — Posted on 2018-11-19

1113 BEAST 2.5: An Advanced Software Platform for Bayesian Evolutionary Analysis

Bouckaert, R.; Vaughan, T. G.; Barido-Sottani, J.; Duchene, S.; Fourment, M.; Gavryushkina, A.; Heled, J.; Jones, G.; Kuhnert, D.; de Maio, N.; Matschiner, M.; Mendes, F. K.; Muller, N.; Ogilvie, H. A.; du Plessis, L.; Popinga, A.; Rambaut, A.; Rasmussen, D.; Siveroni, I.; Suchard, M.; Wu, C.-H.; Xie, D.; Zhang, C.; Stadler, T.; Drummond, A. J.

10.1101/474296 — evolutionary biology — Posted on 2018-11-19

1114 Awareness of MERS-CoV among Staff Members of Prince Sultan Military Medical City in Riyadh, Saudi Arabia

aman, s.; Aljaber, M. I.; Alwehaibi, A. I.; Aman, F. H.; Algaeed, H. A.; Almasoud, S. M.; Alahmari, M. A.; Al Hussain, O.; Elhag, A.

10.1101/474205 — epidemiology — Posted on 2018-11-19

1115 Chronic pain with use of analgesics and mortality in the home healthcare elderly: a nationwide population-based study

Chen, H.-E.; Tsay, W.-I.; Her, S.-H.; Ho, C.-H.; Chen, Y.-C.; Tsai, K.-T.; Hsu, C.-C.; Wang, J.-J.; Huang, C.-C.

10.1101/474239 — epidemiology — Posted on 2018-11-19

1116 Cooperation Enhances Robustness of Coexistence in Spatially Structured Consortia

Ren, X.; Murray, R. M.

10.1101/472811 — synthetic biology — Posted on 2018-11-19

1117 DrrS, a small non-coding Mycobacterium tuberculosis RNA, regulates the whole genome expression shifts consistent with adaptations for survival within host macrophages

Salina, E. G.; Grigorov, A.; Majorov, K.; Logunova, N.; Ignatov, D.; Skvortsova, Y.; Bychenko, O.; Apt, A.; Kaprelyants, A.; Azhikina, T.

10.1101/474304 — microbiology — Posted on 2018-11-19

1118 Age but not disease progression defines CD4+ and CD8+ T stem cell memory levels in human retroviral infections: contrasting effects of HTLV-1 and HIV-1

Menezes, S. M.; Leal, F. E.; Pereira Ribeiro, S.; Dierckx, T.; Roederer, M.; SenGupta, D.; Nixon, D.; Van Weyenbergh, J.

10.1101/473363 — immunology — Posted on 2018-11-19

1119 Title: Human Lung Epithelial Cells Divide >200 Population Doublings without Engaging a Telomere Maintenance Mechanism

Shay, J. W.; Peters-Hall, J. R.; Min, J.; Tedone, E.; Sho, S.; Siteni, S.; Mender, I.

10.1101/474270 — cell biology — Posted on 2018-11-19

1120 Knockdown of DGKZ induces apoptosis andG2/M phase arrest in human acute myeloid leukemia HL-60 cells

Chao, X.; Dong, C.; Li, H.; Tian, Y.; Li, X.; Wang, B.; Zhai, D.; Bai, Y.

10.1101/474221 — cancer biology — Posted on 2018-11-19

1121 Electrochemotherapy with bleomycin associated with doxorubicin induces tumor regression and decreases the proliferative index in canine cutaneous squamous cell carcinomas

Fonseca Alves, C. E.; Anjos, D. S.; Bueno, C.; Magalhaes, L. F.; Magalhaes, G. M.; Mattos-Junior, E.; Rodrigues, M. M. P.; De Nardi, A. B.; Brunner, C.; Leis-Filho, A. F.; Calazans, S. G.

10.1101/474262 — cancer biology — Posted on 2018-11-19

1122 IL-25 induces beige fat to improve metabolic homeostasis via macrophage and innervation

Li, L.; Ma, L.; Feng, J.; Gong, B.; Li, J.; Hu, T.; Zhao, Z.; Qi, W.; Zhou, T.; Yang, X.; Gao, G.; Yang, Z.

10.1101/474288 — biochemistry — Posted on 2018-11-19

1123 The importance of large-diameter trees in the wet tropical rainforests of Australia

Bradford, M.; Murphy, H. T.

10.1101/474213 — ecology — Posted on 2018-11-19

1124 Effect of continuous compressive force on the expression of RANKL, OPG, and VEGF in MC3T3-E1 and MLO-Y4 cells

Yashima, Y.; Kaku, M.; Yamamoto, T.; Izumino, J.; Kagawa, H.; Tanimoto, K.

10.1101/474254 — cell biology — Posted on 2018-11-19

1125 AICAR induces apoptosis and inhibits migration of prostate cancer cells through an AMPK/mTOR-dependent pathway

Su, C.-C.; Hsieh, K.-L.; Wang, S.-C.; Yeh, H.-C.; Huang, S.-P.; Liu, P.-L.; Fang, S.-H.; Cheng, W.-C.; Huang, K.-H.; Chiu, F.-Y.; Lin, I.-L.; Huang, M.-Y.; Li, C.-Y.

10.1101/474197 — cancer biology — Posted on 2018-11-19

1126 Screening a Resource of Recombinant Protein Fragments for Targeted Proteomics

Edfors, F.; Forsstrom, B.; Vunk, H.; Kotol, D.; Fredolini, C.; Maddalo, G.; Svensson, A.-S.; Bostrom, T.; Tegel, H.; Nilsson, P.; Schwenk, J. M.; Uhlen, M.

10.1101/472662 — biochemistry — Posted on 2018-11-19

1127 Optic disc centered imaging versus quadrant imaging in retinal oximetry

Mohan, A.; Shetty, R.; Mahendradas, P.; Webers, C. A.; Berendschot, T.

10.1101/474122 — physiology — Posted on 2018-11-19

1128 Measuring popularity of ecological topics in a temporal dynamical knowledge network

Huang, T.-Y.; Zhao, B.

10.1101/474148 — ecology — Posted on 2018-11-19

1129 Elevation of intracellular levels of nitric oxide in SHR attenuates hyperproliferation of vascular smooth muscle cells through the inhibition of AT1 receptor expression and c-Src/growth factor receptor signaling pathways

Anand-Srivastava, M. B.; Hossain, E.; Sarkar, O.; Li, Y.

10.1101/474163 — cell biology — Posted on 2018-11-19

1130 CDEK: Clinical Drug Experience Knowledgebase

Griesenauer, R.; Schillebeeckx, C.; Kinch, M. S.

10.1101/474189 — bioinformatics — Posted on 2018-11-19

1131 Error sensitivity and optimization of steady-state kinetic parameters using multidimensional chemical kinetic analysis

Eskew, J. S.; Connell, C. G.; Cochran, J. C.

10.1101/474171 — biochemistry — Posted on 2018-11-19

1132 Detection of breast cancer lymph node metastases in frozen sections with a point-of-care low-cost microscope scanner

Holmström, O.; Linder, N.; Moilanen, H.; Suutala, A.; Nordling, S.; Stahls, A.; Lundin, M.; Diwan, V.; Lundin, J.

10.1101/474106 — pathology — Posted on 2018-11-19

1133 Genetic resistance to DEHP-induced transgenerational endocrine disruption

Stenz, L.; Rahban, R.; Prados, J.; Nef, S.; Paoloni-Giacobino, A.

10.1101/474155 — genomics — Posted on 2018-11-19

1134 Clinical experiences with the use of oxytocin injection by healthcare providers in a South-Western State Nigeria: A Cross sectional study.

Ejekam, C. S. R.; Okafor, I. P.; Anyakora, C.; Ozomata, E.; Okunade, K.; Oridota, S. E.; Nwokike, J.

10.1101/474114 — epidemiology — Posted on 2018-11-19

1135 The Influence of Health Insurance on the Utilization of Maternal Health Care Services in Kumba Health District: A Community-based Assessment

Mbuli, M. D.; Mbunka, M. A.; ASANGBEN, T. E. G.; Mbuli, I. A.; Pangmekeh, P. J.; Shey, N. D.

10.1101/474130 — epidemiology — Posted on 2018-11-19

1136 Massively parallel profiling of HIV-1 resistance to the fusion inhibitor enfuvirtide

Dingens, A. S.; Arenz, D.; Overbaugh, J.; Bloom, J. D.

10.1101/472746 — microbiology — Posted on 2018-11-19

1137 The impact of interspecies recombination on human herpes simplex virus evolution and host immune recognition

Casto, A. M.; Roychoudhury, P.; Xie, H.; Selke, S.; Perchetti, G. A.; Wofford, H.; Huang, M.-L.; Verjans, G. M. G. M.; Gottlieb, G. S.; Wald, A.; Jerome, K. R.; Koelle, D. M.; Johnston, C.; Greninger, A. L.

10.1101/472639 — genomics — Posted on 2018-11-19

1138 Stethoscope disinfection is rarely done in Ethiopia: what are the associated factors?

Sahiledengle, B.

10.1101/474098 — epidemiology — Posted on 2018-11-19

1139 Pin1 Regulatory miRNAs as Novel Candidates for Alzheimer’s Disease Treatment

Heidari, E.; Sharifi-Zarchi, A.; Shahpasand, K.; Salehi Siavashani, E.; Amiri, Z.; Rasooli, M.

10.1101/472985 — neuroscience — Posted on 2018-11-19

1140 Mechanisms of strain diversity of disease-associated in-register parallel β-sheet amyloids and implications about prion strains.

Taguchi, Y.; Otaki, H.; Nishida, N.

10.1101/472712 — molecular biology — Posted on 2018-11-19

1141 Evaluating Improvements to Exposure Estimates from Fate and Transport Models by Incorporating Environmental Sampling Effort and Landscape-level Contaminant Use

Rumschlag, S. L.; Rohr, J. R.; Bessler, S.

10.1101/472969 — pharmacology and toxicology — Posted on 2018-11-19

1142 Graph Convolutional Neural Networks for Predicting Drug-Target Interactions

Torng, W.; Altman, R. B.

10.1101/473074 — bioinformatics — Posted on 2018-11-19

1143 Tracing diagnosis trajectories over millions of inpatients reveal an unexpected association between schizophrenia and rhabdomyolysis

Paik, H.; Kan, M. J.; Rappoport, N.; Hadley, D.; Sirota, M.; Chen, B.; Manber, U.; Cho, S. B.; Butte, A. J.

10.1101/473082 — bioinformatics — Posted on 2018-11-19

1144 Principles for enhancing virus capsid capacity and stability from a thermophilic virus capsid structure

Stone, N.; Demo, G.; Agnello, E.; Kelch, B. A.

10.1101/473264 — biochemistry — Posted on 2018-11-19

1145 Homochiral and racemic MicroED structures of a peptide from the ice nucleation protein InaZ

Zee, C.-T.; Glynn, C.; Gallagher-Jones, M.; Miao, J.; Santiago, C. G.; Cascio, D.; Gonen, T.; Sawaya, M.; Rodriguez, J. A.

10.1101/473116 — biochemistry — Posted on 2018-11-19

1146 Real-time contextual feedback for close-loop control of navigation

Lim, J.; Celikel, T.

10.1101/473108 — animal behavior and cognition — Posted on 2018-11-19

1147 Prediction-error signals to violated expectations about person identity and head orientation are doubly-dissociated across the dorsal and ventral visual streams

Robinson, J. E.; Woods, W.; Leung, S.; Kaufman, J.; Breakspear, M.; Young, A. W.; Johnston, P. J.

10.1101/471276 — neuroscience — Posted on 2018-11-19

1148 Untangling direct species associations from mediator species effects with graphical models

Popovic, G.; Warton, D. I.; Thomson, F.; Hui, F. K.; Moles, A. T.

10.1101/470161 — ecology — Posted on 2018-11-19

1149 Biophysical Studies of Some Bee Products as Radioprotectors

Hamieda, S. F.; Hassan, A. I.; Abdou, M. I.; Khalil, W. A.; Abd- El Nour, K. N.

10.1101/472233 — biophysics — Posted on 2018-11-19

1150 Efficient Construction of a Complete Index for Pan-Genomics Read Alignment

Kuhnle, A.; Mun, T.; Boucher, C.; Gagie, T.; Langmead, B.; Manzini, G.

10.1101/472423 — bioinformatics — Posted on 2018-11-19

1151 Identifying disease genes using machine learning and gene functional similarities, assessed through Gene Ontology

Asif, M.; Martiniano, H. F. M. C. M.; Vicente, A. M.; Couto, F. M.

10.1101/472217 — bioinformatics — Posted on 2018-11-19

1152 Genome-wide co-localization of RNA-DNA interactions and fusion RNA pairs

Yan, Z.; Huang, N.; Wu, W.; Chen, W.; Jiang, Y.; Chen, J.; Huang, X.; Wen, X.; Xu, J.; Jin, Q.; Zhang, K.; Chen, Z.; Chien, S.; Zhong, S.

10.1101/472019 — systems biology — Posted on 2018-11-19

1153 Recombination within the Cepaea nemoralis supergene is confounded by incomplete penetrance and epistasis

Davison, A.; Ramos Gonzalez, D.; Caro Aramendia, A.

10.1101/472456 — genetics — Posted on 2018-11-19

1154 Unravelling associations between tree seedling performance, herbivory, competition, and facilitation in high nature value farmlands

Vaz, P. G.; Bugalho, M. N.; Fedriani, J. M.; Branco, M.; Lecompte, X.; Nogueira, C.; Caldeira, M. C.

10.1101/471557 — ecology — Posted on 2018-11-19

1155 Radtools: R utilities for smooth navigation of medical image data

Russell, P.; Ghosh, D.

10.1101/471706 — cancer biology — Posted on 2018-11-19

1156 Prefix-Free Parsing for Building Big BWTs

Boucher, C.; Gagie, T.; Kuhnle, A.; Langmead, B.; Manzini, G.; Mun, T.

10.1101/472399 — bioinformatics — Posted on 2018-11-19

1157 Laniakea: an open solution to provide Galaxy \"on-demand\" instances over heterogeneous cloud infrastructures.

Tangaro, M. A.; Donvito, G.; Antonacci, M.; Chiara, M.; Mandreoli, P.; Pesole, G.; Zambelli, F.

10.1101/472464 — bioinformatics — Posted on 2018-11-19

1158 Genome-wide analysis reveals signatures of selection for gait traits in Yili horse

Liu, L.; Fang, C.; Meng, J.; Detilleux, J. C.; Liu, W.; Yao, X.

10.1101/471797 — genetics — Posted on 2018-11-19

1159 Long-range functional coupling predicts performance: oscillatory EEG networks in multisensory processing

Wang, P.; Goeschl, F.; Friese, U.; Koenig, P.; Engel, A. K.

10.1101/014423 — neuroscience — Posted on 2018-11-19

1160 Remote control of alternative splicing in roots through TOR kinase

Petrillo, E.; Riegler, S.; Fuchs, A.; Servi, L.; Godoy Herz, M. A.; Kubaczka, M. G.; Venhuizen, P.; Schweighofer, A.; Kornblihtt, A. R.; Simpson, C.; Brown, J. W. S.; Meyer, C.; Kalyna, M.; Barta, A.

10.1101/472126 — molecular biology — Posted on 2018-11-19

1161 Transcriptome dynamics in developing leaves from C3 and C4 Flaveria species reveal determinants of Kranz anatomy

Billakurthi, K.; Wrobel, T. J.; Braeutigam, A.; Weber, A.; Westhoff, P.; Gowik, U.

10.1101/473181 — plant biology — Posted on 2018-11-19

1162 Complete genome of a Measles virus from Roraima state, Brazil

Meneses, C.; Nascimento, V. A.; Souza, V. C.; Maito, R. M.; Gomes, M. A.; Cunha, C. R. S. B.; Antony, I. d. A.; Oliveira e Silva, M. E.; Campos, D. P. d. S.; Corado, A. d. L. G.; Pessoa, K. P.; Monteiro, D. C. d. S.; Okumoto, O.; Cunha, M. C.; Pacheco, F. C.; Naveca, F. G.

10.1101/473462 — microbiology — Posted on 2018-11-19

1163 Copy when uncertain: Lower light levels result in higher trail pheromone deposition and stronger reliance on pheromone trails in the ant Lasius niger

Jones, S.; Czaczkes, T. J.; Gallager, A. J.; Bacon, J. P.

10.1101/473579 — animal behavior and cognition — Posted on 2018-11-19

1164 Exposure to a Healthy Gut Microbiome Protects Against Reproductive and Metabolic Dysregulation in a PCOS Mouse Model

Torres, P.; Ho, B.; Arroyo, P.; Sau, L.; Chen, A.; Kelley, S.; Thackray, V.

10.1101/472688 — physiology — Posted on 2018-11-19

1165 Multi-Link Analysis: Brain Network Comparison via Sparse Connectivity Analysis

Crimi, A.; Giancardo, L.; Sambataro, F.; Gozzi, A.; Murino, V.; Sona, D.

10.1101/277046 — neuroscience — Posted on 2018-11-19

1166 Phylogeny, phylogeography and hybridization of Caucasian barbels of the genus Barbus (Actinopterygii, Cyprinidae)

Levin, B. A.; Gandlin, A. A.; Simonov, E.; Levina, M. A.; Barmintseva, A. E.; Japoshvili, B.; Mugue, N. S.; Mumladze, L.; Mustafayev, N. J.; Pashkov, A. N.; Roubenyan, H. R.; Shapovalov, M. I.; Doadrio, I.

10.1101/473173 — evolutionary biology — Posted on 2018-11-19

1167 Estimating epidemic incidence and prevalence from genomic data

Vaughan, T. G.; Leventhal, G. E.; Rasmussen, D. A.; Drummond, A. J.; Welch, D.; Stadler, T.

10.1101/142570 — epidemiology — Posted on 2018-11-19

1168 A cell-topography based mechanism for ligand discrimination by the T-cell receptor

Fernandes, R. A.; Ganzinger, K. A.; Tzou, J.; Jonsson, P.; Lee, S. F.; Palayret, M.; Santos, A. M.; Carr, A. A.; Ponjavic, A.; Chang, V. T.; Macleod, C.; Lagerholm, B. C.; Lindsay, A. E.; Dushek, O.; Tilevik, A.; Davis, S. J.; Klenerman, D.

10.1101/109785 — immunology — Posted on 2018-11-19

1169 Laboratory Methods Supporting Measles surveillance in Queensland, Australia, 2010-2017

McMahon, J. L.; Northill, J. A.; Finger, M.; Lyon, M.; Lambert, S. B.; Mackay, I. M.

10.1101/472175 — microbiology — Posted on 2018-11-19

1170 Effects Of High Copper Exposure On Development And Survival During Early Ontogenesis In The Common Toad

Dmitrieva, E. V.

10.1101/471466 — pharmacology and toxicology — Posted on 2018-11-19

1171 Sexual segregation in a highly pagophilic and sexually dimorphic marine predator

Barbraud, C.; Delord, K.; Kato, A.; Bustamante, P.; Cherel, Y.

10.1101/472431 — ecology — Posted on 2018-11-19

1172 MolMeDB: Molecules on Membranes Database

Juracka, J.; Srejber, M.; Melikova, M.; Bazgier, V.; Berka, K.

10.1101/472167 — biophysics — Posted on 2018-11-19

1173 Insights into the microbiota of Asian seabass (Lates calcarifer) with tenacibaculosis symptoms and description of sp. nov. Tenacibaculum singaporense

Miyake, S.; Soh, M.; Azman, M. N.; Ngoh, S. Y.; Orban, L.; Seedorf, H.

10.1101/472001 — microbiology — Posted on 2018-11-19

1174 Protective immunity against severe malaria is associated with antibodies to a conserved repertoire of PfEMP1 variants

Tessema, S.; Nakajima, R.; Jasinskas, A.; Monk, S.; Lekieffre, L.; Lin, E.; Kiniboro, B.; Proietti, C.; Siba, P. M.; Felgner, P.; Doolan, D. L.; Mueller, I.; Barry, A.

10.1101/472159 — microbiology — Posted on 2018-11-19

1175 A study on the protective effects of CpG ODN-induced mucosal immunity against lung injury in a mouse ARDS model

Wang, G.; Liu, Z.-J.; Liu, X.; Liu, F.-G.; Li, Y.; Weng, Y.-B.; Zhou, J.

10.1101/471896 — immunology — Posted on 2018-11-19

1176 Robust estimation of recent effective population size from number of independent origins in soft sweeps

Khatri, B. S.; Burt, A.

10.1101/472266 — evolutionary biology — Posted on 2018-11-19

1177 Immuno-proteomic interrogation of dengue infection reveals novel HLA haplotype-specific MHC-I antigens

Swaminathan, K.; Olsson, N.; Lund, P. J.; Marceau, C. D.; Wagar, L. E.; Tian, Y.; Sidney, J.; Weiskopf, D.; Majzoub, K.; deSilva, A. D.; Harris, E.; Davis, M. M.; Sette, A.; Carette, J. E.; Elias, J. E.

10.1101/471821 — immunology — Posted on 2018-11-19

1178 NDV-3A vaccination protects mice from Candida albicans biofilm infection

Alqarihi, A.; Singh, S.; Edwards, J. E.; Ibrahim, A. S.; Uppuluri, P.

10.1101/471771 — immunology — Posted on 2018-11-19

1179 DNA methylation modules associate with incident cardiovascular disease and cumulative risk factor exposure

Westerman, K.; Sebastiani, P.; Jacques, P.; Liu, S.; DeMeo, D.; Ordovas, J. M.

10.1101/471722 — genomics — Posted on 2018-11-19

1180 TNF-α differentially regulates cell cycle genes in promyelocytic and granulocytic HL-60/S4 cells

Jacobson, E. C.; Perry, J. K.; Vickers, M. H.; Olins, A. L.; Olins, D. E.; O'Sullivan, J.

10.1101/471789 — genomics — Posted on 2018-11-19

1181 A splice donor variant in CCDC189 is associated with asthenospermia in Nordic Red dairy cattle

10.1101/472282 — genomics — Posted on 2018-11-19

1182 Imputed gene associations identify replicable trans-acting genes enriched in transcription pathways and complex traits

Wheeler, H. E.; Ploch, S.; Barbeira, A. N.; Bonazzola, R.; Siahpirani, A. F.; Saha, A.; Battle, A.; Roy, S.; Im, H. K.

10.1101/471748 — genetics — Posted on 2018-11-19

1183 Tryptophan fluorescence quenching in β-lactam-interacting proteins is modulated by the structure of intermediates and final products of the acylation reaction

Triboulet, S.; Edoo, Z.; Compain, F.; Ourghanlian, C.; Dupuis, A.; Dubee, V.; Sutterlin, L.; Atze, H.; Etheve-Quelquejeu, M.; Hugonnet, J.-E.; Arthur, M.

10.1101/472381 — biochemistry — Posted on 2018-11-19

1184 Divergent interactions maintain the quaternary octameric structure of a new family of esterases

Alalouf, O.; Salama, R.; Tal, O.; Lavid, N.; Lansky, S.; Shoham, G.; Shoham, Y.

10.1101/466904 — biochemistry — Posted on 2018-11-19

1185 Digging deeper into the human proteome: A novel nanoflow LCMS setup using micro pillar array columns (μPAC™)

Op De Beeck, J.; Pauwels, J.; Staes, A.; Van Landuyt, N.; Van Haver, D.; De Malsche, W.; Desmet, G.; Argentini, A.; Martens, L.; Jacobs, P.; Impens, F.; Gevaert, K.

10.1101/472134 — biochemistry — Posted on 2018-11-19

1186 Importin-β targets HURP to kinetochore-fibers in coordination with Ran-GTP in human mitotic cells

Tsuchiya, K.; Hayashi, H.; Nishina, M.; Okumura, M.; Kanemaki, M.; Goshima, G.; Kiyomitsu, T.

10.1101/473538 — cell biology — Posted on 2018-11-19

1187 Assessing sub-cellular resolution in spatial proteomics experiments

Gatto, L.; Breckels, L. M.; Lilley, K. S.

10.1101/377630 — bioinformatics — Posted on 2018-11-19

1188 DNA microscopy: Optics-free spatio-genetic imaging by a stand-alone chemical reaction

Weinstein, J. A.; Regev, A.; Zhang, F.

10.1101/471219 — bioengineering — Posted on 2018-11-19

1189 Asymmetrical localization of Nup107-160 subcomplex components within the nuclear pore complex in fission yeast

Asakawa, H.; Kojidani, T.; Yang, H.-J.; Ohtsuki, C.; Osakada, H.; Matsuda, A.; Iwamoto, M.; Chikashige, Y.; Nagao, K.; Obuse, C.; Hiraoka, Y.; Haraguchi, T.

10.1101/223131 — cell biology — Posted on 2018-11-19

1190 ATR and mTOR regulate F-actin to alter nuclear architecture and repair replication stress

Lamm, N.; Masamsetti, V. P.; Read, M. N.; Biro, M.; Cesare, A. J.

10.1101/451708 — cell biology — Posted on 2018-11-19

1191 The Barcode, UMI, Set format and BUStools

Melsted, P.; Ntranos, V.; Pachter, L.

10.1101/472571 — bioinformatics — Posted on 2018-11-18

1192 Quantifying dynamic protein acetylation using quantitative stoichiometry

Baeza, J.; Lawton, A. J.; Fan, J.; Smallegan, M. J.; Leinert, I.; Gandhi, T.; Bernhardt, O. M.; Reiter, L.; Denu, J. M.

10.1101/472530 — biochemistry — Posted on 2018-11-18

1193 The Expression of Inflammatory Genes in 3T3-L1 Adipocytes Exhibits a Memory to Stimulation by Macrophage Secretions

Hancock, D.; Meng, L.; Holliday, M.; Yuwono, N.; Zhang, N.; Denyer, G.

10.1101/336610 — biochemistry — Posted on 2018-11-19

1194 Pioneer and nonpioneer cooperation drives lineage specific chromatin opening

Mayran, A.; Sochodolsky, K.; Khetchoumian, K.; Harris, J.; Gauthier, Y.; Bemmo, A.; Balsalobre, A.; Drouin, J.

10.1101/472647 — genomics — Posted on 2018-11-18

1195 How predictive can be predictions in the neurocognitive processing of auditory and audiovisual speech? A deep learning study.

Hueber, T.; Tatulli, E.; Girin, L.; Schwartz, J.-L.

10.1101/471581 — bioinformatics — Posted on 2018-11-18

1196 MosaicPlanner: Hardware Agnostic Array Tomography Acquisition Software

Serafin, R.; Gliko, O.; Smith, S. J.; Collman, F.

10.1101/473009 — neuroscience — Posted on 2018-11-18

1197 Pervasive translation of circular RNAs driven by short IRES-like elements

Fan, X.; Yang, Y.; Wang, Z.

10.1101/473207 — molecular biology — Posted on 2018-11-18

1198 Acquired interbacterial defense systems protect against interspecies antagonism in the human gut microbiome

Ross, B. D.; Verster, A. J.; Radey, M. C.; Schmidtke, D. T.; Pope, C. E.; Hoffman, L. R.; Hajjar, A.; Peterson, S. B.; Borenstein, E.; Mougous, J.

10.1101/471110 — microbiology — Posted on 2018-11-18

1199 Comprehensive genetic analysis by whole exome sequencing in 352 Korean pediatric patients with unknown neurodevelopmental disorders

Lee, Y.; Lee, J. S.; Kim, S. Y.; Cho, J.; Yoo, Y.; Lee, S.; Yoo, T.; Lee, M.; Seo, J.; Lee, J.; Kneissl, J.; Kim, E.; Kim, H.; Kim, W. J.; Kim, J. S.; Ko, J. M.; Cho, A.; Lim, B. C.; Kim, W. S.; Choi, M.; Chae, J.-H.

10.1101/472803 — genetics — Posted on 2018-11-18

1200 Dispersal predicts hybrid zone widths across animal diversity: Implications for species borders under incomplete reproductive isolation

McEntee, J. P.; Burleigh, J. G.; Singhal, S.

10.1101/472506 — ecology — Posted on 2018-11-18

1201 Disorganization of the histone core promotes organization of heterochromatin into phase-separated droplets

Sanulli, S.; Trnka, M. J.; Dharmarajan, V.; Tibble, R. W.; Pascal, B. D.; Burlingame, A. L.; Griffin, P. R.; Gross, J. D.; Narlikar, G. J.

10.1101/473132 — biophysics — Posted on 2018-11-18

1202 Boost-HiC : Computational enhancement of long-range contacts in chromosomal contact maps

Carron, L.; Morlot, J.-b.; Matthys, V.; Lesne, A.; Mozziconacci, J.

10.1101/471607 — bioinformatics — Posted on 2018-11-18

1203 3D brain angiogenesis model to reconstitute maturation of functional human blood-brain barrier in vitro

Lee, S.; Chung, M.; Jeon, N. L.

10.1101/471334 — bioengineering — Posted on 2018-11-18

1204 Evaluation of S1PR1/pSTAT3 and S1PR2/FOXP1 Expression in Aggressive, Mature B Cell Lymphomas

Al-Kawaaz, M.; Sanchez, T.; Kluk, M. J.

10.1101/472449 — pathology — Posted on 2018-11-18

1205 The Medical Genome Reference Bank: Whole genomes and phenotype of 2,570 healthy elderly

Pinese, M.; Lacaze, P.; Rath, E. M.; Stone, A.; Brion, M.-J.; Ameur, A.; Nagpal, S.; Puttick, C.; Husson, S.; Degrave, D.; Navin Cristina, T.; Silva Kahl, V. F.; Statham, A. L.; Woods, R. L.; McNeil, J. J.; Riaz, M.; Barr, M.; Nelson, M. R.; Reid, C. M.; Murray, A. M.; Shah, R. C.; Wolfe, R.; Atkins, J. R.; Fitzsimmons, C.; Cairns, H. M.; Green, M. J.; Carr, V. J.; Cowley, M. J.; Pickett, H. A.; James, P. A.; Powell, J. E.; Kaplan, W.; Gibson, G.; Gyllensten, U.; Cairns, M. J.; McNamara, M.; Dinger, M. E.; Thomas, D. M.

10.1101/473348 — genomics — Posted on 2018-11-18

1206 High inter- and intraspecific turnover of satellite repeats in great apes

Cechova, M.; Harris, R. S.; Tomaszkiewicz, M.; Arbeithuber, B.; Chiaromonte, F.; Makova, K. D.

10.1101/470054 — evolutionary biology — Posted on 2018-11-18

1207 Convolutional models of RNA energetics

Wu, M. J.

10.1101/470740 — biophysics — Posted on 2018-11-18

1208 Continuous chromatin state feature annotation of the human epigenome

Chen, B.; Shokraneh Kenari, N.; Libbrecht, M. W.

10.1101/473017 — bioinformatics — Posted on 2018-11-18

1209 Chemo-mechanical Coupling in the Transport Cycle of a Type II ABC Transporter

Tamura, K.; Sugimoto, H.; Shiro, Y.; Sugita, Y.

10.1101/471920 — biochemistry — Posted on 2018-11-18

1210 Natural strain diversity reveals novel biofilm regulation in squid-colonizing Vibrio fischeri

Rotman, E. R.; Bultman, K. M.; Brooks, J. F.; Gyllborg, M. C.; Burgos, H. L.; Wollenberg, M. S.; Mandel, M. J.

10.1101/471292 — microbiology — Posted on 2018-11-18

1211 Guidance of zoospores by potassium gradient sensing mediates aggregation

Galiana, E.; Cohen, C.; Thomen, P.; Mura, C.; Noblin, X.

10.1101/470864 — microbiology — Posted on 2018-11-18

1212 Early divergence of mutational mechanisms drives genetic heterogeneity of fetal tissues

Kuijk, E.; Blokzijl, F.; Jager, M.; Besselink, N.; Boymans, S.; Chuva de Sousa Lopes, S.; van Boxtel, R.; Cuppen, E.

10.1101/471342 — genomics — Posted on 2018-11-18

1213 Bone marrow-on-a-chip: Emulating the human bone marrow

Sieber, S.; Winter, A.; Wachsmuth, J.; David, R.; Stecklum, M.; Hellmeyer, L.; Ewart, L.; Marx, U.; Lauster, R.; Rosowski, M.

10.1101/469528 — bioengineering — Posted on 2018-11-18

1214 Systems Biology Theory Clarification of a Controversy in Pancreatic Beta Cell Regeneration

Cai, H.; Cheng, R.; Yuan, R.; Zhu, X.; Ao, P.

10.1101/469320 — systems biology — Posted on 2018-11-18

1215 Benchmarking university medical centres for responsible metrics. A cross sectional study on timely results dissemination across 36 German centres

Wieschowski, S.; Riedel, N.; Wollmann, K.; Kahrass, H.; Mueller-Ohlraun, S.; Schuermann, C.; Kelley, S.; Kszuk, U.; Siegerink, B.; Dirnagl, U.; Meerpohl, J.; Strech, D.

10.1101/467746 — scientific communication and education — Posted on 2018-11-18

1216 Continuous Evaluation of Ligand Protein Predictions: A Weekly Community Challenge for Drug Docking

Wagner, J.; Churas, C.; Liu, S.; Swift, R.; Chiu, M.; Shao, C.; Feher, V.; Burley, S.; Gilson, M.; Amaro, R.

10.1101/469940 — biophysics — Posted on 2018-11-18

1217 MCS^2: Minimal coordinated supports for fast enumeration of minimal cut sets in metabolic networks

Miraskarshahi, R.; Zabeti, H.; Stephen, T.; Chindelevitch, L.

10.1101/471250 — bioinformatics — Posted on 2018-11-18

1218 Identification of multi-targeting and synergistic neuromodulators of epilepsy associated protein-targets in Ayurvedic herbs using network pharmacological approach

Choudhary, N.; Singh, V.

10.1101/471474 — systems biology — Posted on 2018-11-18

1219 Reduced mitochondrial lipid oxidation leads to fat accumulation in myosteatosis

Gumucio, J. P.; Qasawa, A. H.; Ferrara, P. J.; Malik, A. N.; Funai, K.; McDonagh, B.; Mendias, C. L.

10.1101/471979 — physiology — Posted on 2018-11-18

1220 Genetic Association of Arterial Stiffness Index with Blood Pressure and Coronary Artery Disease

Zekavat, S. M.; Haas, M.; Aragam, K.; Emdin, C.; Khera, A. V.; Klarin, D.; Zhao, H.; Natarajan, P.

10.1101/453878 — bioinformatics — Posted on 2018-11-18

1221 A stable, long-term cortical signature underlying consistent behavior

Gallego, J. A.; Perich, M. G.; Chowdhury, R. H.; Solla, S. A.; Miller, L. E.

10.1101/447441 — neuroscience — Posted on 2018-11-18

1222 Elevated expression of LGR5 and WNT signalling factors in neuroblastoma cells with acquired drug resistance

Myssina, S.; Clark-Corrigall, J.; Michaelis, M.; Cinatl, J.; Ahmed, S. U.; Carr-Wilkinson, J.

10.1101/449785 — cancer biology — Posted on 2018-11-18

1223 How do owners perceive dominance in dogs?

Kubinyi, E.; Wallis, L.

10.1101/419044 — animal behavior and cognition — Posted on 2018-11-18

1224 A Reproducible Neurobiology of Depressive Rumination

Pisner, D.; Shumake, J.; Beevers, C.; Schnyer, D.

10.1101/365759 — neuroscience — Posted on 2018-11-18

1225 Embracing the dropouts in single-cell RNA-seq data

Qiu, P.

10.1101/468025 — bioinformatics — Posted on 2018-11-17

1226 A Novel Melatonergic Signature Predicts Reccurence Risk and Therapeutic Response in Breast Cancer Patients

Nguyen, M. N.; Tran, H. Q.; Luu, P. L.; Than, V. T.; Clarke, D.; Lam, H. N.; Nguyen, D. T.; Le, K. V. T.; Nguyen, T. V.; Le, M. T.; Hoang, T. X.; Duy, P. Q.; Tran, H. T.

10.1101/472753 — cancer biology — Posted on 2018-11-17

1227 Identification of regulatory elements from nascent transcription using dREG

Wang, Z.; Chu, T.; Choate, L. A.; Danko, C. G.

10.1101/321539 — bioinformatics — Posted on 2018-11-17

1228 Multidimensional dynamics of the proteome in the degenerative and ageing mammalian brain

Andrews, B.; Maslen, S.; Almeida-Souza, L.; Skehel, J. M.; Frank, R. A. W.

10.1101/472118 — systems biology — Posted on 2018-11-17

1229 Plant Extracellular Vesicles Contain Diverse Small RNA Species and Are Enriched in 10 to 17 Nucleotide \"Tiny\" RNAs

Baldrich, P.; Rutter, B. D.; Zandkarimi, H.; Podicheti, R.; Meyers, B.; Innes, R.

10.1101/472928 — plant biology — Posted on 2018-11-17

1230 Transient activation of the UPRER is an essential step in the acquisition of pluripotency during reprogramming

Simic, M.; Moehle, E.; Schinzel, R.; Lorbeer, F.; Jullie, D.; Halloran, J.; Heydari, K.; Sanchez, M.; Hockemeyer, D.; Dillin, A.

10.1101/472787 — cell biology — Posted on 2018-11-17

1231 Variability of bacterial behavior in the mammalian gut captured using a growth-linked single-cell synthetic gene oscillator

Riglar, D. T.; Richmond, D. L.; Potvin-Trottier, L.; Verdegaal, A. A.; Naydich, A. D.; Bakshi, S.; Leoncini, E.; Paulsson, J.; Silver, P. A.

10.1101/472720 — synthetic biology — Posted on 2018-11-17

1232 MRE11-RAD50-NBS1 activates Fanconi Anemia R-loop suppression at transcription-replication conflicts

Chang, E. Y.-C.; Wells, J. P.; Tsai, S.-H.; Coulombe, Y.; Chan, Y. A.; Zhu, Y. D.; Fournier, L.-A.; Hieter, P.; Masson, J.-Y.; Stirling, P. C.

10.1101/472654 — cell biology — Posted on 2018-11-17

1233 Functionalized mesoporous silica nanoparticles for innovative boron-neutron capture therapy of resistant cancers

Vares, G.; Jallet, V.; Matsumoto, Y.; Rentier, C.; Takayama, K.; Sasaki, T.; Hayashi, Y.; Kumada, H.; Sugawara, H.

10.1101/471128 — cancer biology — Posted on 2018-11-17

1234 Utilizing comprehensive and mini-kinome panels to optimize the selectivity of quinoline inhibitors for cyclin G associated kinase (GAK)

Asquith, C.; Hopkins, C.; Treiber, D. K.; Zuercher, W.

10.1101/471615 — pharmacology and toxicology — Posted on 2018-11-17

1235 Miniaturization technologies for cost effective AmpliSeq library preparation for next generation sequencing

Ogiso-Tanaka, E.; Kaga, A.; Hajika, M.

10.1101/467464 — genomics — Posted on 2018-11-17

1236 Dynamic constriction and fission of ER membranes by reticulon

Espadas, J.; Pendin, D.; Bocanegra, R.; Escalada, A.; Misticoni, G.; Trevisan, T.; Velasco del Olmo, A.; Bova, S.; Ibarra, B.; Kuzmin, P.; Shnyrova, A.; Frolov, V.; Daga, A.

10.1101/472829 — cell biology — Posted on 2018-11-17

1237 A stable, long-term cortical signature underlying consistent behavior

Gallego, J. A.; Perich, M. G.; Chowdhury, R. H.; Solla, S. A.; Miller, L. E.

10.1101/447441 — neuroscience — Posted on 2018-11-17

1238 Consensus sequence design as a general strategy to create hyperstable, biologically active proteins

Sternke, M.; Tripp, K. W.; Barrick, D.

10.1101/466391 — biophysics — Posted on 2018-11-17

1239 PhenotypeXpression: sub-classification of disease states using public gene expression data and literature

Wang, L. L.; Lin, H.; Bao, X.; Sengupta, S.; Busby, B.; Butler, R. R.

10.1101/461301 — bioinformatics — Posted on 2018-11-17

1240 The detection of novel and resident marine species using environmental DNA metabarcoding of sediment and water

Holman, L. E.; de Bruyn, M.; Creer, S.; Carvalho, G.; Robidart, J.; Rius, M.

10.1101/440768 — molecular biology — Posted on 2018-11-17

1241 An amphipathic helix enables septins to sense micron-scale membrane curvature

Cannon, K. S.; Woods, B. L.; Crutchley, J. M.; Gladfelter, A. S.

10.1101/379982 — cell biology — Posted on 2018-11-17

1242 Genetic, inflammatory, and epithelial cell differentiation factors control expression of human calpain-14

Miller, D. E.; Forney, C.; Rochman, M.; Cranert, S.; Habel, J.; Rymer, J.; Lynch, A.; Schroeder, C.; Lee, J.; Sauder, A.; Smith, Q.; Chawla, M.; Trimarchi, M. P.; Lu, X.; Fjellman, E.; Brusilovsky, M.; Barski, A.; Waggoner, S.; Weirauch, M.; Rothenberg, M.; Kottyan, L.

10.1101/359638 — genomics — Posted on 2018-11-17

1243 Olfactory and neuromodulatory signals reverse visual object avoidance to approach in Drosophila

Cheng, K. Y.; Frye, M. A.

10.1101/472605 — neuroscience — Posted on 2018-11-17

1244 Nanobodies reveal an extra-synaptic population of SNAP-25 and Syntaxin 1A in hippocampal neurons

Maidorn, M.; Olichon, A.; Rizzoli, S. O.; Opazo, F.

10.1101/472704 — neuroscience — Posted on 2018-11-17

1245 Evolution of the D. melanogaster chromatin landscape and its associated proteins

Parey, E.; Crombach, A.

10.1101/284828 — evolutionary biology — Posted on 2018-11-17

1246 Border-ownership-dependent tilt aftereffect for shape defined by binocular disparity and motion parallax

Rideaux, R.; Harrison, W.

10.1101/472076 — neuroscience — Posted on 2018-11-17

1247 On-scalp MEG system utilizing an actively shielded array of optically-pumped magnetometers

Iivanainen, J.; Zetter, R.; Groen, M.; Hakkarainen, K.; Parkkonen, L.

10.1101/471391 — neuroscience — Posted on 2018-11-17

1248 A Combined Behavioral and Neuroimaging Battery to Test Positive Appraisal Style Theory of Resilience in Longitudinal Studies

Kampa, M.; Schick, A.; Yuen, K.; Sebastian, A.; Chmitorz, A.; Saase, V.; Wessa, M.; Tüscher, O.; Kalisch, R.

10.1101/470435 — neuroscience — Posted on 2018-11-17

1249 The effects of the angiotensin II receptor antagonist losartan on appetitive versus aversive learning

Pulcu, E.; Shkreli, L.; Holst, C. G.; Woud, M.; Craske, M.; Browning, M.; Reinecke, A.

10.1101/472050 — neuroscience — Posted on 2018-11-17

1250 Chronic corticosterone enhancement aggravates alpha-synuclein brain spreading pathology and substantia nigra neurodegeneration in mice

Burtscher, J.; Copin, J.-C.; Rodrigues, J.; Thangaraj, S. K.; Chiki, A.; Guillot de Suduiraut, M.-I.; Sandi, C.; Lashuel, H. A.

10.1101/469999 — neuroscience — Posted on 2018-11-17

1251 Functional interrogation of a depression-related serotonergic SNP, rs6295, using a humanized mouse model

Cunningham, A. M.; Santos, T. L.; Gutzeit, V. A.; Hamilton, H.; Hen, R.; Donaldson, Z.

10.1101/472621 — neuroscience — Posted on 2018-11-17

1252 Signatures and mechanisms of low-dimensional neural predictive manifolds

Recanatesi, S.; Farrell, M.; Lajoie, G.; Deneve, S.; Rigotti, M.; Shea-Brown, E.

10.1101/471987 — neuroscience — Posted on 2018-11-17

1253 Predicting individual speech intelligibility from the neural tracking of acoustic- and phonetic-level speech representations

Lesenfants, D.; Vanthornhout, J.; Verschueren, E.; Decruy, L.; Francart, T.

10.1101/471367 — neuroscience — Posted on 2018-11-17

1254 A databank for intracellular electrophysiological mapping of the adult somatosensory cortex

Lantyer, A. d. S.; Calcini, N.; Biljsma, A.; Kole, K.; Emmelkamp, M.; Peeters, M.; Scheenen, W. J. J.; Zeldenrust, F.; Celikel, T.

10.1101/472043 — neuroscience — Posted on 2018-11-17

1255 C. elegans granulins promote an age-associated decline in protein homeostasis via lysosomal protease inhibition

Butler, V. J.; Cortopassi, W. A.; Argouarch, A. R.; Pierce, O. M.; Vohra, M.; Oses-Prieto, J. A.; Gao, F.; Caballero, B.; Chand, S.; Seeley, W. W.; Miller, B. L.; Coppola, G.; Burlingame, A. L.; Ashrafi, K.; Cuervo, A. M.; Jacobson, M.; Kao, A. W.

10.1101/472258 — neuroscience — Posted on 2018-11-17

1256 Machine learning versus logistic regression methods for 2-year mortality prognostication in a small, heterogeneous glioma database

Panesar, S.; D'Souza, R.; Yeh, F.-C.; Fernandez-Miranda, J.

10.1101/472555 — neuroscience — Posted on 2018-11-17

1257 Targeting IDH1 as a pro-senescent therapy in high-grade serous ovarian cancer

Dahl, E. S.; Buj, R.; Leon, K. E.; Newell, J. M.; Bitler, B. G.; Snyder, N. W.; Aird, K. M.

10.1101/472613 — cancer biology — Posted on 2018-11-17

1258 Covalent Ligand Screening Uncovers a RNF4 E3 Ligase Recruiter for Targeted Protein Degradation Applications

Ward, C. C.; Kleinman, J. I.; Brittain, S. M.; Lee, P. S.; Chung, C. Y. S.; Kim, K.; Petri, Y.; Thomas, J. R.; Tallarico, J. A.; McKenna, J. M.; Schirle, M.; Nomura, D. K.

10.1101/439125 — biochemistry — Posted on 2018-11-16

1259 Choice history biases subsequent evidence accumulation

Urai, A. E.; de Gee, J. W.; Tsetsos, K.; Donner, T. H.

10.1101/251595 — neuroscience — Posted on 2018-11-16

1260 Altered cortical brain structure and increased risk for disease seen decades after perinatal exposure to maternal smoking: A study of 9,000 adults in the UK Biobank

Salminen, L. E.; Wilcox, R. R.; Zhu, A. H.; Riedel, B. C.; Ching, C. R.; Rashid, F.; Thomopoulos, S. I.; Saremi, A.; Harrison, M. B.; Ragothaman, A.; Knight, V.; Boyle, C. P.; Medland, S. E.; Thompson, P. M.; Jahanshad, N.

10.1101/471839 — neuroscience — Posted on 2018-11-16

1261 G-quadruplex formation on specific surface-exposed regions of the human ribosomal RNA

Mestre-Fos, S.; Penev, P. I.; Suttapitugsakul, S.; Ito, C.; Petrov, A. S.; Wartell, R. M.; Wu, R.; Williams, L. D.

10.1101/435594 — biochemistry — Posted on 2018-11-16

1262 Maternally inherited differences within mitochondrial Complex I control murine healthspan.

Hirose, M.; Schilf, P.; Zarse, K.; Busch, H.; Fuellen, G.; Joehren, O.; Koehling, R.; Koenig, I. R.; Richer, B.; Rupp, J.; Schwaninger, M.; Seeger, K.; Sina, C.; Ristow, M.; Ibrahim, S. M.

10.1101/472092 — genetics — Posted on 2018-11-16

1263 A spatially regulated GTPase cycle of Rheb controls growth factor signaling to mTORC1

Kovacevic, M.; Klein, C. H.; Rossmannek, L.; Konitsiotis, A. D.; Stanoev, A.; Kraemer, A. U.; Bastiaens, P.

10.1101/472241 — cell biology — Posted on 2018-11-16

1264 Recruitment of human eIF4G1 or DAP5 to the 5’ untranslated regions of a subset of cellular mRNAs drives cap-independent translation

Haizel, S. A.; Bhardwaj, U.; Gonzalez, R. L.; Mitra, S.; Goss, D.

10.1101/472498 — biophysics — Posted on 2018-11-16

1265 Single-molecule kinetics of pore assembly by the membrane attack complex

Parsons, E. S.; Stanley, G. J.; Pyne, A. L. B.; Hodel, A. W.; Nievergelt, A. P.; Menny, A.; Yon, A. R.; Rowley, A.; Richter, R. P.; Fantner, G. E.; Bubeck, D.; Hoogenboom, B. W.

10.1101/472274 — biophysics — Posted on 2018-11-16

1266 Spindle checkpoint silencing at kinetochores with submaximal microtubule occupancy

Etemad, B.; Vertesy, A.; Kuijt, T. E. F.; Sacristan, C.; Oudenaarden, A. v.; Kops, G. J. P. L.

10.1101/472407 — cell biology — Posted on 2018-11-16

1267 SVXplorer: Identification of structural variants through overlap of discordant clusters

Kathuria, K.; Ratan, A.

10.1101/469981 — bioinformatics — Posted on 2018-11-16

1268 In Vivo Two-Photon Imaging of Neuronal and Vascular Responses in Mice Chronically Exposed to Ethanol

O'Herron, P.; Summers, P. M.; Shih, A. Y.; Kara, P.; Woodward, J. J.

10.1101/471763 — neuroscience — Posted on 2018-11-16

1269 CRISPR/Cas9-mediated mutagenesis of phytoene desaturase in diploid and octoploid strawberry

Wilson, F.; Harrison, K.; Armitage, A. D.; Simkin, A. J.; Harrison, R. J.

10.1101/471680 — molecular biology — Posted on 2018-11-16

1270 Interleukin-8/CXCR2 signaling regulates therapy-induced plasticity and enhances tumorigenicity in glioblastoma

Hasan, T.; Caragher, S. P.; Shireman, J. M.; Park, C. H.; Atashi, F.; Baisiwala, S.; Lee, G.; Guo, D.; Wu, M.; Wang, J. Y.; Dey, M.; Lesniak, M. S.; Horbinski, C. M.; James, C. D.; Ahmed, A. U.

10.1101/454553 — cancer biology — Posted on 2018-11-16

1271 Activation of dopamine receptor 2 (DRD2) prompts transcriptomic and metabolic plasticity in glioblastoma

Caragher, S. P.; Shireman, J. M.; Huang, M.; Miska, J.; Baisiwala, S.; Park, C.; Saathoff, M.; Warnke, L.; Xiao, T.; Lesniak, M. S.; James, C. D.; Meltzer, H.; Tryba, A. K.; Ahmed, A. U.

10.1101/454389 — cancer biology — Posted on 2018-11-16

1272 Fast fluorescence lifetime imaging reveals the aggregation processes of α-synuclein and polyglutamine in aging Caenorhabditis elegans

Laine, R. F.; Sinnige, T.; Ma, K. Y.; Haack, A. J.; Poudel, C.; Gaida, P.; Curry, N.; Perni, M.; Nollen, E. A. A.; Dobson, C. M.; Vendruscolo, M.; Kaminski Schierle, G. S.; Kaminski, C. F.

10.1101/414714 — biophysics — Posted on 2018-11-16

1273 Simulating multi-level dynamics of antimicrobial resistance in a membrane computing model

Campos, M.; Capilla, R.; Llorens, C.; Canton, R.; Moya, A.; Sempere, J.-M.; Coque, T.; Fernandez-Lanza, V.; Naya, F.; Futami, R.; Baquero, F.

10.1101/306100 — microbiology — Posted on 2018-11-16

1274 Development and validation of the Evaluation Platform In COPD (EPIC): a population-based outcomes model of COPD for Canada

Sadatsafavi, M.; Ghanbarian, S.; Adibi, A.; Johnson, K. M.; FitzGerald, J. M.; Flanagan, W.; Bryan, S.; Sin, D.; Canadian Respiratory Research Network,

10.1101/401745 — epidemiology — Posted on 2018-11-16

1275 Spatiotemporal Dynamics of Molecular Pathology in Amyotrophic Lateral Sclerosis

Maniatis, S.; Aijo, T.; Vickovic, S.; Braine, C.; Kang, K.; Mollbrink, A.; Fagegaltier, D.; Andrusivova, Z.; Saarenpaa, S.; Saiz-Castro, G.; Cuevas, M.; Watters, A.; Lundeberg, J.; Bonneau, R.; Phatnani, H.

10.1101/389270 — neuroscience — Posted on 2018-11-16

1276 Sucrose intensity coding and decision-making in rat gustatory cortices

Fonseca, E.; de Lafuente, V.; Simon, S. A.; Gutierrez, R.

10.1101/391342 — neuroscience — Posted on 2018-11-16

1277 Fast and flexible linear mixed models for genome-wide genetics

Runcie, D. E.; Crawford, L.

10.1101/373902 — genomics — Posted on 2018-11-16

1278 Combining 3D single molecule localization strategies for reproducible bioimaging

Cabriel, C.; Bourg, N.; Jouchet, P.; Dupuis, G.; Leterrier, C.; Baron, A.; Badet-Denisot, M.-A.; Vauzeilles, B.; Fort, E.; Leveque-Fort, S.

10.1101/385799 — biophysics — Posted on 2018-11-16

1279 Every which way? On predicting tumor evolution using cancer progression models

Diaz-Uriarte, R.; Vasallo, C.

10.1101/371039 — bioinformatics — Posted on 2018-11-16

1280 The sensitivity to Hsp90 inhibitors of both normal and oncogenically transformed cells is determined by the equilibrium between cellular quiescence and activity

Echeverria, P. C.; Bhattacharya, K.; Joshi, A.; Wang, T.; Picard, D.

10.1101/472290 — cancer biology — Posted on 2018-11-16

1281 Integrative Pharmacogenomics Analysis of Patient Derived Xenografts

Mer, A. S.; Ba-alawi, W.; Smirnov, P.; Wang, Y. X.; Brew, B.; Ortmann, J.; Tsao, M.-S.; Cescon, D.; Goldenberg, A.; Haibe-Kains, B.

10.1101/471227 — bioinformatics — Posted on 2018-11-16

1282 Reconstructing complex lineage trees from scRNA-seq data using MERLoT

Parra, R. G.; Papadopoulos, N.; Ahumada-Arranz, L.; El Kholtei, J.; Mottelson, N.; Horokhovskyi, Y.; Treutlein, B.; Soeding, J.

10.1101/261768 — bioinformatics — Posted on 2018-11-16

1283 Hidden in plain sight: What remains to be discovered in the eukaryotic proteome?

Wood, V.; Lock, A.; Harris, M.; Rutherford, K.; Bahler, J.; Oliver, S.

10.1101/469569 — molecular biology — Posted on 2018-11-16

1284 Filamentation of Vibrio cholerae is an adaptation for surface attachment and biofilm architecture

Wucher, B. R.; Bartlett, T. M.; Persat, A.; Nadell, C. D.

10.1101/470815 — microbiology — Posted on 2018-11-16

1285 Quantitative systems pharmacological analysis of drugs of abuse reveals the pleiotropy of their targets and the effector role of mTORC1

Pei, F.; Li, H.; Liu, B.; Bahar, I.

10.1101/470922 — systems biology — Posted on 2018-11-16

1286 Knowledge is power: Contingency instruction promotes threat extinction in high intolerance of uncertainty individuals

Morriss, J.; van Reekum, C.

10.1101/470724 — neuroscience — Posted on 2018-11-16

1287 Genetic control of gene expression and splicing in the developing human brain

Walker, R. L.; Ramaswami, G.; Hartl, C.; Mancuso, N.; Gandal, M. J.; de la Torre-Ubieta, L.; Pasaniuc, B.; Stein, J. L.; Geschwind, D. H.

10.1101/471193 — neuroscience — Posted on 2018-11-16

1288 An integrative systems medicine approach to delineate complex genotype-phenotype associations in Autism Spectrum Disorder

Asif, M.; Martiniano, H. F. M. C.; Marques, A. R.; Santos, J. X.; Vilela, J.; Rasga, C.; Oliveira, G.; Couto, F. M.; Vicente, A. M.

10.1101/470757 — systems biology — Posted on 2018-11-16

1289 PTPN14 Degradation by High-Risk Human Papillomavirus E7 Limits Keratinocyte Differentiation and Contributes to HPV-Mediated Oncogenesis

Hatterschide, J.; Bohidar, A. E.; Grace, M.; Nulton, T. J.; Windle, B.; Morgan, I. M.; Munger, K.; White, E. A.

10.1101/471045 — microbiology — Posted on 2018-11-16

1290 The microbiota influences the Drosophila melanogaster life history strategy

Walters, A. W.; Matthews, M. K.; Hughes, R. C.; Malcolm, J.; Rudman, S.; Newell, P. D.; Douglas, A. E.; Schmidt, P. S.; Chaston, J.

10.1101/471540 — evolutionary biology — Posted on 2018-11-16

1291 Early Brain Imaging can Predict Autism: Application of Machine Learning to a Clinical Imaging Archive

Katuwal, G. J.; Baum, S. A.; Michael, A. M.

10.1101/471169 — bioinformatics — Posted on 2018-11-16

1292 Programmed His bundle pacing - a novel maneuver for the diagnosis of His bundle capture

Jastrzebski, M.; Moskal, P.; Bednarek, A.; Kiełbasa, G.; Vijayaraman, P.; Czarnecka, D.

10.1101/471268 — physiology — Posted on 2018-11-16

1293 Plant Growth-Promoting Activity of Beta-Propeller Protein YxaL Secreted from Bacillus velezensis Strain GH1-13

Kim, Y.-H.; Choi, Y.; Oh, Y. Y.; Ha, N.-C.; Song, J.

10.1101/471185 — microbiology — Posted on 2018-11-16

1294 The Antibiotic Neomycin Enhances Coxsackievirus Plaque Formation

Woods Acevedo, M.; Pfeiffer, J. K.

10.1101/471284 — microbiology — Posted on 2018-11-16

1295 Cryo-EM structure of adenovirus type 3 fibre with desmoglein 2 shows a novel mode of receptor engagement

Vassal-Stermann, E.; Effantin, G.; Zubieta, C.; Burmeister, W. P.; Iseni, F.; Wang, H.; Lieber, A.; Schoehn, G.; Fender, P.

10.1101/471383 — microbiology — Posted on 2018-11-16

1296 Genomic analysis of dingoes identifies genomic regions under reversible selection during domestication and feralization

Zhang, S.-j.; Wang, G.-D.; Ma, P.; Zhang, L.-l.; Yin, T.-T.; Liu, Y.-h.; Otecko, N. O.; Wang, M.; Ma, Y.-p.; Wang, L.; Mao, B.; Savolainen, P.; Zhang, Y.-p.

10.1101/472084 — genomics — Posted on 2018-11-16

1297 Reduced mitochondrial lipid oxidation leads to fat accumulation in myosteatosis

Gumucio, J. P.; Qasawa, A. H.; Ferrara, P. J.; Malik, A. N.; Funai, K.; McDonagh, B.; Mendias, C. L.

10.1101/471979 — physiology — Posted on 2018-11-16

1298 Distinct neural mechanisms meet challenges in dynamic visual attention due to either load or spatial interference

Maki-Marttunen, V.; Hagen, T.; Laeng, B.; Espeseth, T.

10.1101/472209 — neuroscience — Posted on 2018-11-16

1299 Concurrent Multisensory Integration and Segregation with Complementary Congruent and Opposite Neurons

Zhang, W.-H.; Wang, H.; Chen, A.; Gu, Y.; Lee, T. S.; Wong, K. Y. M.; Wu, S.

10.1101/471490 — neuroscience — Posted on 2018-11-16

1300 Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing mouse spinal cord

Delile, J.; Rayon, T.; Melchionda, M.; Edwards, A.; Briscoe, J.; Sagner, A.

10.1101/472415 — developmental biology — Posted on 2018-11-16

1301 Tumors induce de novo steroid biosynthesis in T cells to evade immunity

Mahata, B.; Pramanik, J.; Weyden, L. v. d.; Kar, G.; Riedel, A.; Fonseca, N. A.; Kundu, K.; Ryder, E.; Duddy, G.; Walczak, I.; Davidson, S.; Okkenhaug, K.; Adams, D. J.; Shields, J. D.; Teichmann, S. A.

10.1101/471359 — immunology — Posted on 2018-11-16

1302 Contribution of Retrotransposition to Developmental Disorders

Gardner, E. J.; Prigmore, E.; Gallone, G.; Short, P. J.; Sifrim, A.; Singh, T.; Chandler, K. E.; Clement, E.; Lachlan, K. L.; Prescott, K.; Rosser, E.; FitzPatrick, D. R.; Firth, H. V.; Hurles, M. E.; Deciphering Developmental Disorders study,

10.1101/471375 — genetics — Posted on 2018-11-16

1303 Development of algorithms for automated detection of cervical pre-cancers with a low-cost, point-of-care, Pocket Colposcope

Asiedu, M. N.; Simhal, A. K.; Chaudhary, U.; Mueller, J. L.; Lam, C. T.; Schmitt, J. W.; Venegas, G.; Sapiro, G.; Ramanujam, N.

10.1101/324541 — bioinformatics — Posted on 2018-11-16

1304 Psychophysical Scaling Reveals a Unified Theory of Visual Memory Strength

Schurgin, M. W.; Wixted, J. T.; Brady, T. F.

10.1101/325472 — neuroscience — Posted on 2018-11-16

1305 Overcoming non-small cell lung cancer radiation resistance by modulating the tumor-immune ecosystem

Nizzero, S.; Alfonso, J. C. L.; Alvarez-Arenas, A.; Mirzaev, I.; Zervantonakis, I. K.; Lewin, T.; Rishi, A.; Piretto, E.; Joshi, T. V.; Santiago, D. N.; Karolak, A. M.; Howard, R.; Enderling, H.; Karreth, F. A.; Torres-Roca, J.

10.1101/458372 — immunology — Posted on 2018-11-16

1306 Is PRS Good for Predicting Complex Polygenic Traits?

Zhao, B.; Zou, F.

10.1101/447797 — genetics — Posted on 2018-11-16

1307 Allelic polymorphism at foxo contributes to local adaptation in Drosophila melanogaster

Betancourt, N.; Rajpurohit, S.; Durmaz, E.; Fabian, D.; Kapun, M.; Flatt, T.; Schmidt, P.

10.1101/471565 — evolutionary biology — Posted on 2018-11-16

1308 Endoparasites and vector-borne pathogens in dogs from Greek islands: pathogen distribution and zoonotic implications

Diakou, A.; Di Cesare, A.; Morelli, S.; Colombo, M.; Halos, L.; Simonato, G.; Tamvakis, A.; Beugnet, F.; Paoletti, B.; Traversa, D.

10.1101/472365 — epidemiology — Posted on 2018-11-16

1309 Tryptophan nitration physiologically regulates cardiac lactate dehydrogenase active site loop mobility and activity

Nogales, C.; Frihoff, J.; Thoenges, D.; Sessions, R. B.; Sickmann, A.; Nedvetskaya, T.; Ibarra-Alvarado, C.; Schmitz, V.; Rosen, P.; Goedecke, A.; Jovanovic, A.; Perlman, D. H.; Klinke, A.; Baldus, S.; Casas, A. I.; Bai, P.; Szabo, C.; Feelisch, M.; Schmidt, H. H. H. W.

10.1101/348789 — biochemistry — Posted on 2018-11-16

1310 Proteostasis environment shapes higher-order epistasis operating on antibiotic resistance

Guerrero, R. F.; Scarpino, S.; Rodrigues, J. V.; Hartl, D. L.; Ogbunugafor, C. B.

10.1101/470971 — genetics — Posted on 2018-11-16

1311 Recurrent losses and rapid evolution of the condensin II complex in insects

King, T. D.; Leonard, C. J.; Cooper, J. C.; Nguyen, S.; Joyce, E. F.; Phadnis, N.

10.1101/471243 — evolutionary biology — Posted on 2018-11-16

1312 Selection, linkage, and population structure interact to shape genetic variation among threespine stickleback genomes

Nelson, T. C.; Crandall, J. G.; Ituarte, C. M.; Catchen, J. M.; Cresko, W.

10.1101/471870 — evolutionary biology — Posted on 2018-11-16

1313 Effects of Biogas Slurry on Fruit Economic Traits and Soil Nutrient of Camellia oleifera Abel

You, L.; Liu, H.; Yu, S.; Wang, C.; Zhou, Z.; Zhang, L.; Hu, D.

10.1101/472316 — plant biology — Posted on 2018-11-16

1314 Voluntary control of illusory contour formation

Harrison, W. J.; Rideaux, R.

10.1101/219279 — neuroscience — Posted on 2018-11-16

1315 The impact of modern jazz dance on the electrical brain activity

Wind, J.; Schöllhorn, W.

10.1101/472324 — neuroscience — Posted on 2018-11-16

1316 Reproductive capacity evolves in response to ecology through common developmental mechanisms in Hawaiian Drosophila

Sarikaya, D. P.; Church, S. H.; Lagomarsino, L. P.; Montgomery, S.; Magnacca, K. N.; Price, D. K.; Kaneshiro, K. Y.; Extavour, C. G.

10.1101/470898 — evolutionary biology — Posted on 2018-11-16

1317 A Reproducible Neurobiology of Depressive Rumination

Pisner, D.; Shumake, J.; Beevers, C.; Schnyer, D.

10.1101/365759 — neuroscience — Posted on 2018-11-16

1318 A silent killer in the Far North Region of Cameroon: increasing prevalence of hypertension among population living in Kaele

NTENTIE, F. R.; MFOPOU MBOINDI, O.; DAMA, G.; WANDJI NGUEDJO, M.; TONOU TCHUENTE, B. R.; Azantsa kingue, B. G.; NGONDI, J. L.; Oben, E. J.; by Francoise Raïssa NTENTIE, Ousmane MFOPOU MBOINDI, Gerald DAMA, Maxwell WANDJI,

10.1101/472357 — epidemiology — Posted on 2018-11-16

1319 Exploratory study of factors associated with human brucellosis in mainland China based on time-series-cross-section data from 2005 to 2016

Lin, Y.; Zhang, T.; Zhang, X.

10.1101/472340 — epidemiology — Posted on 2018-11-16

1320 Assessing the Relation between the Spatiotemporal Microhabitat Heterogeneity and the Dispersion Patterns of Two Syntopic Small Mammals in a Midlatitude Temperate Forest

De la Cruz-Arguello, I. M.; Castro-Campillo, A.; Zavala-Hurtado, A.; Salame-Mendez, A.; Ramirez-Pulido, J.

10.1101/278390 — ecology — Posted on 2018-11-16

1321 Classifying Asian Rice Cultivars (Oryza sativa L.) into Indica and Japonica Using Logistic Regression Model with Publicly Available Phenotypic Data

Kim, B.

10.1101/470351 — systems biology — Posted on 2018-11-16

1322 Colonization of the tsetse fly midgut with commensal Enterobacter inhibits trypanosome infection establishment

Weiss, B. L.; Maltz, M. A.; Vigneron, A.; Wu, Y.; Walter, K.; O'Neill, M. B.; Wang, J.; Aksoy, S.

10.1101/472373 — microbiology — Posted on 2018-11-16

1323 Development of three-dimensional articular cartilage construct using silica nano-patterned substrate

Park, I.-S.; Choi, Y. J.; Song, B. R.; Kim, H.-S.; Park, S.-H.; Choi, B. H.; Kim, J.-H.; Min, B.-H.

10.1101/472332 — cell biology — Posted on 2018-11-16

1324 The sensitivity to Hsp90 inhibitors of both normal and oncogenically transformed cells is determined by the equilibrium between cellular quiescence and activity

Echeverria, P. C.; Bhattacharya, K.; Joshi, A.; Wang, T.; Picard, D.

10.1101/472290 — cancer biology — Posted on 2018-11-16

1325 Detoxification of host plant phenolic aglycones by the spruce budworm

Despland, E.; Donkor, D.; Mirzahosseini, Z.; Bauce, E.; Bede, J.

10.1101/472308 — zoology — Posted on 2018-11-16

1326 In Vivo Two-Photon Imaging of Neuronal and Vascular Responses in Mice Chronically Exposed to Ethanol

O'Herron, P.; Summers, P. M.; Shih, A. Y.; Kara, P.; Woodward, J. J.

10.1101/471763 — neuroscience — Posted on 2018-11-16

1327 The Hippo network kinase STK38 contributes to protein homeostasis by inhibiting BAG3-mediated autophagy

Klimek, C.; Wördehoff, J.; Jahnke, R.; Kathage, B.; Stadel, D.; Behrends, C.; Hergovich, A.; Höhfeld, J.

10.1101/458323 — cell biology — Posted on 2018-11-16

1328 Extracellular Cation Binding Pocket Is Essential For Ion Conduction Of OsHKT2;2

Riedelsberger, J.; Vergara-Jaque, A.; Pineros, M.; Dreyer, I.; Gonzalez, W.

10.1101/471003 — plant biology — Posted on 2018-11-16

1329 Shared neural mechanisms between imagined and perceived egocentric motion - A combined GVS and fMRI study

Macauda, G.; Moisa, M.; Mast, F. W.; Ruff, C. C.; Michels, L.; Lenggenhager, B.

10.1101/385625 — neuroscience — Posted on 2018-11-16

1330 Identifying loci under positive selection in complex population histories

Refoyo-Martinez, A.; da Fonseca, R. R.; Halldorsdottir, K.; Arnason, E.; Mailund, T.; Racimo, F.

10.1101/453092 — evolutionary biology — Posted on 2018-11-16

1331 Male and female bees show large differences in floral preference

Roswell, M.; Dushoff, J.; Winfree, R.

10.1101/432518 — ecology — Posted on 2018-11-16

1332 Neuronal correlations in MT and MST impair population decoding of opposite directions of random dot motion

Chaplin, T. A.; Hagan, M. A.; Allitt, B. J.; Lui, L. L.

10.1101/267732 — neuroscience — Posted on 2018-11-16

1333 Predicting mutational routes to new adaptive phenotypes

Lind, P. A.; Libby, E.; Herzog, J.; Rainey, P. B.

10.1101/335711 — evolutionary biology — Posted on 2018-11-16

1334 Differential effects of learned associations with words and pseudowords on event-related brain potentials

Kulke, L.; Bayer, M.; Grimm, A.-M.; Schacht, A.

10.1101/240945 — neuroscience — Posted on 2018-11-16

1335 Tissue mechanics and somatosensory neural responses govern touch sensation in C. elegans

Sanzeni, A.; Katta, S.; Petzold, B.; Pruitt, B. L.; Goodman, M. B.; Vergassola, M.

10.1101/471904 — neuroscience — Posted on 2018-11-16

1336 ATR function is indispensable to allow proper mammalian follicle development.

Pacheco, S.; Garcia Caldes, M.; Roig, I.

10.1101/471698 — cell biology — Posted on 2018-11-16

1337 Inherited defects in natural killer cells shape tumor immune microenvironment, clinical outcome and immunotherapy response

Xu, X.; Li, J.; Zou, J.; Feng, X.; Zhang, C.; Zheng, R.; Duanmu, W.; Saha-Mandal, A.; Ming, Z.; Wang, E.

10.1101/471912 — cancer biology — Posted on 2018-11-16

1338 Single Agent and Synergistic Activity of Maritoclax with ABT-263 in Nasopharyngeal Carcinoma (NPC) Cell Lines

Lian, B. S. X.; Lo, K.-W.; Khoo, A. S.-B.; Mohana Kumaran, N.

10.1101/471888 — cancer biology — Posted on 2018-11-16

1339 SKN-1/Nrf2 regulation of neuromuscular function in response to oxidative stress requires EGL-15/FGF Receptor and DAF-2/insulin Receptor signaling in Caenorhabditis elegans.

Kim, S.; Sieburth, D.

10.1101/471755 — neuroscience — Posted on 2018-11-16

1340 In Vivo Two-Photon Imaging of Neuronal and Vascular Responses in Mice Chronically Exposed to Ethanol

O'Herron, P.; Summers, P. M.; Shih, A. Y.; Kara, P.; Woodward, J. J.

10.1101/471763 — neuroscience — Posted on 2018-11-16

1341 CRISPR/Cas9-mediated mutagenesis of phytoene desaturase in diploid and octoploid strawberry

Wilson, F.; Harrison, K.; Armitage, A. D.; Simkin, A. J.; Harrison, R. J.

10.1101/471680 — molecular biology — Posted on 2018-11-16

1342 Truncated, uncapped mRNA 5’ ends targeted by cytoplasmic recapping cluster at CAGE tags and some transcripts are alternatively spliced

Berger, M. R.; Alvarado, R.; Kiss, D. L.

10.1101/471813 — molecular biology — Posted on 2018-11-16

1343 Miniaturized Permeability Assay for CRISPR-Mediated Genome-Wide Screens

Simonneau, C.; Yang, J.; Kong, X.; Kilker, R.; Edelstein, L.; Fortina, P.; Londin, E.; Horowitz, A.

10.1101/471854 — cell biology — Posted on 2018-11-16

1344 Differential Signaling Mediated by ApoE2, ApoE3, and ApoE4 in Human Neurons Parallels Alzheimer’s Disease Risk

Huang, Y.-W. A.; Zhou, B.; Nabet, A. M.; Wernig, M.; Südhof, T.

10.1101/460899 — neuroscience — Posted on 2018-11-15

1345 Mouse Academy: high-throughput automated training and trial-by-trial behavioral analysis during learning

Qiao, M.; Zhang, T.; Segalin, C.; Sam, S.; Perona, P.; Meister, M.

10.1101/467878 — animal behavior and cognition — Posted on 2018-11-16

1346 The landscape of DNA methylation associated with the transcriptomic network in laying hens and broilers get insight into embryonic muscle development in chicken

Liu, Z.; Shen, X.; Han, S.; Wang, Y.; Zhu, Q.; Cui, C.; He, H.; Zhao, J.; Chen, Y.; Zhang, Y.; Ye, L.; Zhang, Z.; Liu, D.; Zhao, X.; Yin, H.

10.1101/470278 — bioinformatics — Posted on 2018-11-15

1347 Revisiting tradeoffs in Rubisco kinetic parameters

Flamholz, A.; Prywes, N.; Moran, U.; Davidi, D.; Bar-On, Y.; Oltrogge, L.; Alves, R.; Savage, D.; Milo, R.

10.1101/470021 — systems biology — Posted on 2018-11-15

1348 Assembly-free and alignment-free sample identification using genome skims

Sarmashghi, S.; Bohmann, K.; Gilbert, M. T. P.; Bafna, V.; Mirarab, S.

10.1101/230409 — ecology — Posted on 2018-11-15

1349 Enhanced and selective translation expands the lysosome size and promotes antigen presentation during phagocyte activation

Hipolito, V. E. B.; Diaz, J.; Tandoc, K.; Chauhan, N.; Saric, A.; Topisirovic, I.; Botelho, R.

10.1101/260257 — cell biology — Posted on 2018-11-15

1350 Differential regional decline in dopamine receptor availability across adulthood: Linear and nonlinear effects of age

Seaman, K. L.; Smith, C. T.; Juarez, E. J.; Dang, L. C.; Castrellon, J. J.; Burgess, L. L.; San Juan, M. D.; Kundzicz, P. M.; Cowan, R. L.; Zald, D. H.; Samanez-Larkin, G.

10.1101/358200 — neuroscience — Posted on 2018-11-15

1351 Neural distinctiveness declines with age in auditory cortex and is associated with auditory GABA levels.

Lalwani, P.; Gagnon, H.; Cassady, K. E.; Simmonite, M.; Peltier, S. J.; Seidler, R. D.; Taylor, S.; Weissman, D. H.; Polk, T. A.

10.1101/470781 — neuroscience — Posted on 2018-11-15

1352 Augmenting cognitive load during split-belt walking increases the generalization of motor memories across walking contexts

Mariscal, D. M.; Iturralde, P. A.; Torres-Oviedo, G.

10.1101/470930 — neuroscience — Posted on 2018-11-15

1353 Decreased Inter Trial Phase Coherence of Steady-State Visual Evoked Responses in Sleep Deprivation

Eidelman-Rothman, M.; Ben-Simon, E.; Freche, D.; Keil, A.; Hendler, T.; Levit-Binnun, N.

10.1101/471730 — neuroscience — Posted on 2018-11-15

1354 Reward Modulates Local Field Potentials, Spiking Activity and Spike-Field Coherence in the Primary Motor Cortex

An, J.; Yadav, T.; Hessburg, J. P.; Francis, J. T.

10.1101/471151 — neuroscience — Posted on 2018-11-15

1355 Ethanol Experience Enhances Glutamatergic Ventral Hippocampal Inputs To D1 Receptor-Expressing Medium Spiny Neurons In The Nucleus Accumbens Shell

Kircher, D. M.; Aziz, H.; Mangieri, R.; Morrisett, R.

10.1101/471011 — neuroscience — Posted on 2018-11-15

1356 CD36hi monocytes play immunoregulatory roles in human umbilical cord blood

Lee, J. G.; Jager, K. E.; Seki, Y.; Nelson, A. J.; Vuchkovska, A.; Nishimura, M.; White, P.; Knight, K. L.; Iwashima, M.

10.1101/461459 — immunology — Posted on 2018-11-15

1357 A Cyclin A - Myb-MuvB - Aurora B network regulates the choice between mitotic cycles and polyploid endoreplication cycles.

Rotelli, M.; Policastro, R. A.; Bolling, A.; Killion, A.; Weinberg, A.; Dixon, M.; Zentner, G. E.; Walczak, C. E.; Lilly, M. A.; Calvi, B. R.

10.1101/449983 — developmental biology — Posted on 2018-11-15

1358 TrackSig: reconstructing evolutionary trajectories of mutations in cancer

Rubanova, Y.; Shi, R.; Li, R.; Wintersinger, J.; Sahin, N.; Deshwar, A.; Morris, Q.; PCAWG Evolution and Heterogeneity Working Group, ; PCAWG network,

10.1101/260471 — bioinformatics — Posted on 2018-11-15

1359 Integrating Vectors for Genetic Studies in the Rare Actinomycete Amycolatopsis marina

Gao, H.; Murugesan, B.; Hossbach, J.; Evans, S.; Stark, M.; Smith, M.

10.1101/436022 — microbiology — Posted on 2018-11-15

1360 Wolf-Hirschhorn Syndrome-associated genes are enriched in motile neural crest and affect craniofacial development in Xenopus laevis

Mills, A.; Bearce, E.; Cella, R.; Kim, S. W.; Selig, M.; Lee, S.; Lowery, L. A.

10.1101/471672 — developmental biology — Posted on 2018-11-15

1361 Aligning Needs: Integrating Citizen Science Efforts into Schools Through Service Requirements.

Tsueng, G.; Kumar, A.; Nanis, M.; Su, A. I.

10.1101/304766 — scientific communication and education — Posted on 2018-11-15

1362 A Complex Evolutionary History for the Disease Susceptibility CDHR3 Locus

O'Neill, M. B.; Laval, G.; Teixeira, J.; Palmenberg, A.; Pepperell, C.

10.1101/186031 — genetics — Posted on 2018-11-15

1363 Discovery of volatile biomarkers of Parkinsons disease from sebum

Trivedi, D. K.; Sinclair, E.; Xu, Y.; Sarkar, D.; Liscio, C.; Banks, P.; Milne, J.; Silverdale, M.; Kunath, T.; Goodacre, R.; Barran, P.

10.1101/469726 — neuroscience — Posted on 2018-11-15

1364 Predictiveness and Reward Effects on Attention can be Explained by a Single Mechanism

Paskewitz, S.; Jones, M.

10.1101/469809 — neuroscience — Posted on 2018-11-15

1365 Modular organization of the murine locomotor pattern in presence and absence of sensory feedback from muscle spindles

Santuz, A.; Akay, T.; Mayer, W. P.; Wells, T. L.; Schroll, A.; Arampatzis, A.

10.1101/470492 — neuroscience — Posted on 2018-11-15

1366 Cortical network fingerprints predict deep brain stimulation outcome in dystonia

Gonzalez-Escamilla, G.; Muthuraman, M.; Reich, M.; Koirala, N.; Riedel, C.; Glaser, M.; Lange, F.; Deuschl, G.; Volkmann, J.; Groppa, S.

10.1101/470526 — neuroscience — Posted on 2018-11-15

1367 Deep Residual Learning for Neuroimaging: An application to Predict Progression to Alzheimer’s Disease

Abrol, A.; Bhattarai, M.; Fedorov, A.; Du, Y.; Plis, S.; Calhoun, V.

10.1101/470252 — neuroscience — Posted on 2018-11-15

1368 Chance is an important element in phagolysosomal acidification that favors the macrophage

Dragotakes, Q.; Stouffer, K.; Fu, M. S.; Leon-Rodriguez, C. M.; Freij, J. B.; Bergman, A.; Casadevall, A.

10.1101/470617 — microbiology — Posted on 2018-11-15

1369 Genomic signatures of evolutionary rescue in bats surviving white-nose syndrome

Gignoux-Wolfsohn, S. A.; Pinsky, M.; Kerwin, K.; Herzog, C.; Hall, M.; Bennett, A.; Fefferman, N.; Maslo, B.

10.1101/470294 — evolutionary biology — Posted on 2018-11-15

1370 Nonlinear Effects of Intraspecific Competition Alter Landscape-Wide Upscaling of Ecosystem Function

Little, C. J.; Fronhofer, E. A.; Altermatt, F.

10.1101/470591 — ecology — Posted on 2018-11-15

1371 You’d better decide first: overt and covert decisions improve metacognitive accuracy

Siedlecka, M.; Skora, Z.; Paulewicz, B.; Wierzchon, M.

10.1101/470146 — animal behavior and cognition — Posted on 2018-11-15

1372 PCF11 connects alternative polyadenylation to formation and spontaneous regression of neuroblastoma

10.1101/426536 — genetics — Posted on 2018-11-15

1373 Proper chromosome alignment depends on BRCA2 phosphorylation by PLK1

Ehlen, A.; Martin, C.; Miron, S.; Julien, M.; Theillet, F. X.; Boucherit, V.; Ropars, V.; Duchambon, P.; El Marjou, A.; Zinn Justin, S.; Carreira, A.

10.1101/265934 — cell biology — Posted on 2018-11-15

1374 Low-dose cadmium potentiates lung inflammatory response to 2009 pandemic H1N1 influenza virus in mice

Chandler, J. D.; Hu, X.; Ko, E.; Park, S.; Fernandes, J.; Lee, Y.-T.; Orr, M. L.; Hao, L.; Smith, M. R.; Neujahr, D. C.; Uppal, K.; Kang, S.-M.; Jones, D. P.; Go, Y.-M.

10.1101/346866 — pharmacology and toxicology — Posted on 2018-11-15

1375 Inducible Lung Epithelial Resistance Requires Multisource Reactive Oxygen Species Generation to Protect against Bacterial Infections

Ware, H.; Kulkarni, V.; Wang, Y.; Leiva, M.; Kirkpatrick, C.; Pantaleon Garcia, J.; Wali, S.; Sikkema, W.; Tour, J.; Evans, S. E.

10.1101/471649 — immunology — Posted on 2018-11-15

1376 Wolf-Hirschhorn Syndrome-associated genes are enriched in motile neural crest and affect craniofacial development in Xenopus laevis

Mills, A.; Bearce, E.; Cella, R.; Kim, S. W.; Selig, M.; Lee, S.; Lowery, L. A.

10.1101/471672 — developmental biology — Posted on 2018-11-15

1377 Genome-wide association studies for yield-related traits in soft red winter wheat grown in Virginia

Ward, B.; Brown-Guedira, G.; Kolb, F.; Van Sanford, D.; Tyagi, P.; Sneller, C.; Griffey, C.

10.1101/471656 — plant biology — Posted on 2018-11-15

1378 Ecological occurrence and plant regeneration of embryoid of the endangered and endemic plant Dysosma versipellis in China

Tan, X.-m.; zhou, y.-q.; Wu, P.-B.; Wei, Y.; Yang, S.-L.; Tang, h.-z.; Xiao-Ming Tan, Ya-Qin Zhou, Pei-Bin Wu, Ying Wei, Shi-Lin Yang, Hong-Zhen Tang,

10.1101/471631 — plant biology — Posted on 2018-11-15

1379 Common garden experiment reveals altered nutritional values and DNA methylation profiles in micropropagated three elite Ghanaian sweet potato genotypes

Akomeah, B.; Quain, M. D.; Ramesh, S. A.; Rodriguez Lopez, C. M.

10.1101/471623 — plant biology — Posted on 2018-11-15

1380 Age analysis and growth patterns of Tenualosa ilisha using otolith examination and length-weight relationships from different regions of Bangladesh

Ahmed, M. B. U.; Ahammad, A. K. S.; Shahjahan, M.; Datta, B. K.; Rabbi, M. F.; Alam, M. A.; Bashar, M. A.; Mahmud, Y.

10.1101/471664 — molecular biology — Posted on 2018-11-15

1381 Charting the emergent organotypic landscape of the mammalian gut endoderm at single-cell resolution

Nowotschin, S.; Setty, M.; Kuo, Y.-Y.; Liu, V.; Garg, V.; Sharma, R.; Simon, C. S.; Saiz, N.; Gardner, R.; Boutet, S. C.; Church, D. M.; Hoodless, P. A.; Hadjantonakis, A.-K.; Pe'er, D.

10.1101/471078 — developmental biology — Posted on 2018-11-15

1382 Senescent cells and the dynamics of aging

Karin, O.; Agrawal, A.; Porat, Z.; Krizhanovsky, V.; Alon, U.

10.1101/470500 — systems biology — Posted on 2018-11-15

1383 In vivo phosphatidylserine variations steer Rho GTPase signaling in a cell-context dependent manner

Platre, M. P.; Bayle, V.; Armengot, L.; Bareille, J.; Marques-Bueno, M. M.; Creff, A.; Maneta-Peyret, L.; Fiche, J.-B.; Nolmann, M.; Miege, C.; Moreau, P.; Martiniere, A.; Jaillais, Y.

10.1101/471573 — plant biology — Posted on 2018-11-15

1384 Representation of music genres based on the spectro-temporal modulation responses of the human brain

Nakai, T.; Koide-Majima, N.; Nishimoto, S.

10.1101/471326 — neuroscience — Posted on 2018-11-15

1385 The Drosophila pioneer factor Zelda modulates the nuclear microenvironment of a Dorsal target enhancer to potentiate transcriptional output

Yamada, S.; Whitney, P. H.; Huang, S.-K.; Eck, E. C.; Garcia, H. G.; Rushlow, C. A.

10.1101/471029 — developmental biology — Posted on 2018-11-15

1386 Transgenic mice expressing tunable levels of DUX4 develop characteristic facioscapulohumeral muscular dystrophy-like pathophysiology ranging in severity

Jones, T. I.; Chew, G.-L.; Barraza-Flores, P.; Schreier, S.; Ramirez, M.; Wuebbles, R. D.; Burkin, D. J.; Bradley, R. K.; Jones, P. L.

10.1101/471094 — cell biology — Posted on 2018-11-15

1387 Multi-scale Loading and Damage Mechanisms of Rat Tail, Plantaris, and Achilles Tendons

Lee, A.; Elliott, D.

10.1101/471052 — biophysics — Posted on 2018-11-15

1388 Habitat fragmentation compromises the population dynamic of the globally near-threatened Straight-billed Reedhaunter (Limnoctites rectirostris)

Goncalves, M. S.; Pons, P.; Bonow, F.; Galvao Bastazini, V. A.; Gil-Delgado, J.; Lopez Iborra, G.

10.1101/468488 — ecology — Posted on 2018-11-15

1389 The landscape of DNA methylation associated with the transcriptomic network in laying hens and broilers get insight into embryonic muscle development in chicken

Liu, Z.; Shen, X.; Han, S.; Wang, Y.; Zhu, Q.; Cui, C.; He, H.; Zhao, J.; Chen, Y.; Zhang, Y.; Ye, L.; Zhang, Z.; Liu, D.; Zhao, X.; Yin, H.

10.1101/470278 — bioinformatics — Posted on 2018-11-15

1390 Capturing Multicellular System Designs Using the Synthetic Biology Open Language (SBOL)

Brown, B.; Atallah, C.; McLaughlin, J. A.; Misirli, G.; Goni-Moreno, A.; Roehner, N.; Skelton, D. J.; Bartley, B.; Beal, J.; Poh, C. L.; Ofiteru, I. D.; Wipat, A.

10.1101/463844 — synthetic biology — Posted on 2018-11-15

1391 Contextual interference effect is independent of retroactive inhibition but variable practice is not always beneficial

Thuerer, B.; Gedemer, S.; Focke, A.; Stein, T.

10.1101/466896 — neuroscience — Posted on 2018-11-15

1392 Comprehensive modeling of Spinal Muscular Atrophy in Drosophila melanogaster

Spring, A. M.; Raimer, A. C.; Hamilton, C. D.; Schillinger, M. J.; Matera, A. G.

10.1101/394908 — neuroscience — Posted on 2018-11-15

1393 Probing the circuits of conscious perception with magnetophosphenes

Modolo, J.; Hassan, M.; Ruffini, G.; Legros, A.

10.1101/449769 — neuroscience — Posted on 2018-11-15

1394 Natural Wolbachia infections are common in the major malaria vectors in Central Africa

Ayala, D.; Akone-Ella, O.; Rahola, N.; Kengne, P.; Ngangue, M. F.; Mezeme, F.; Makanga, B. K.; Costantini, C.; Simard, F.; Prugnolle, F.; Roche, B.; Duron, O.; Paupy, C.

10.1101/343715 — ecology — Posted on 2018-11-15

1395 The congruence effect is impaired in healthy aging: a relationship to event-related potentials and theta-alpha oscillations

Packard, P. A.; Steiger, T.; Fuentemilla, L.; Bunzeck, N.

10.1101/303859 — neuroscience — Posted on 2018-11-15

1396 Decelerating sex chromosome differentiation in sexually monomorphic primates

Shearn, R.; Lecompte, E.; Regis, C.; Mousset, S.; Penel, S.; Douay, G.; Crouau-Roy, B.; Marais, G.

10.1101/445072 — genomics — Posted on 2018-11-15

1397 Individual differences in visual salience vary along semantic dimensions

de Haas, B.; Iakovidis, A. L.; Schwarzkopf, D. S.; Gegenfurtner, K. R.

10.1101/444257 — neuroscience — Posted on 2018-11-15

1398 Accurate characterization of expanded tandem repeat length and sequence through whole genome long-read sequencing on PromethION.

De Roeck, A.; De Coster, W.; Bossaerts, L.; Cacace, R.; De Pooter, T.; Van Dongen, J.; D'Hert, S.; De Rijk, P.; Strazisar, M.; Van Broeckhoven, C.; Sleegers, K.

10.1101/439026 — genomics — Posted on 2018-11-15

1399 Dendritic NMDA receptors in parvalbumin neurons enable strong and stable neuronal assemblies

Cornford, J. H.; Mercier, M. S.; Leite, M.; Magloire, V.; Häusser, M.; Kullmann, D. M.

10.1101/279505 — neuroscience — Posted on 2018-11-15

1400 Microbial Dysbiosis and polyamine metabolism as predictive markers for early detection during progression of pancreatic adenocarcinoma in spontaneous mouse model

Mendez, R.; Kesh, K.; Arora, N.; Di Martino, L.; McAllister, F.; Merchant, N.; Banerjee, S.; Banerjee, S.

10.1101/342634 — cancer biology — Posted on 2018-11-15

1401 Force-profile analysis of the cotranslational folding of HemK and filamin domains: Comparison of biochemical and biophysical folding assays

Kemp, G.; Kudva, R.; de la Rosa, A.; von Heijne, G.

10.1101/470831 — molecular biology — Posted on 2018-11-15

1402 Discovery of Drosophila melanogaster from Wild African Environments and Genomic Insights into Species History

Sprengelmeyer, Q. D.; Mansourian, S.; Lange, J. D.; Matute, D. R.; Cooper, B. S.; Jirle, E. V.; Stensmyr, M. C.; Pool, J. E.

10.1101/470765 — genomics — Posted on 2018-11-15

1403 Evolutionary characteristics of intergenic transcribed regions indicate widespread noisy transcription in the Poaceae

Lloyd, J. P.; Bowman, M. J.; Azodi, C. B.; Sowers, R. P.; Moghe, G. D.; Childs, K. L.; Shiu, S.-H.

10.1101/440933 — genomics — Posted on 2018-11-15

1404 A parameter-efficient deep learning approach to predict conversion from mild cognitive impairment to Alzheimer’s disease

Spasov, S.; Passamonti, L.; Duggento, A.; Lio, P.; Toschi, N.

10.1101/383687 — bioinformatics — Posted on 2018-11-15

1405 Optogenetic vision restoration with high resolution

Ferrari, U.; Deny, S.; Sengupta, A.; Caplette, R.; Sahel, J.-A.; Dalkara, D.; Picaud, S.; Duebel, J.; Marre, O.

10.1101/470773 — neuroscience — Posted on 2018-11-15

1406 The double tubular contractile structure of the type VI secretion system displays striking flexibility and elasticity

Stietz, M. S.; Liang, X.; Wong, M.; Hersch, S.; Dong, T. G.

10.1101/470229 — microbiology — Posted on 2018-11-15

1407 A non-canonical arm of UPRER mediates longevity through ER remodeling and lipophagy.

Daniele, J. R.; Higuchi-Sanabria, R.; Ramachandran, V.; Sanchez, M.; Durieux, J.; Tronnes, S. U.; Paul, J. W.; Esping, D. J.; Monshietehadi, S.; Metcalf, M. G.; Dillin, A.

10.1101/471177 — cell biology — Posted on 2018-11-15

1408 Deficiency of nucleotide excision repair explains mutational signature observed in cancer

Jager, M.; Blokzijl, F.; Kuijk, E.; Bertl, J.; Vougioukalaki, M.; Janssen, R.; Besselink, N.; Boymans, S.; de Ligt, J.; Skou Pedersen, J.; Hoeijmakers, J.; Pothof, J.; van Boxtel, R.; Cuppen, E.

10.1101/221168 — molecular biology — Posted on 2018-11-15

1409 A revised biosynthetic pathway for the cofactor F420 in bacteria

10.1101/470336 — molecular biology — Posted on 2018-11-15

1410 In the absence of apoptosis, myeloid cells arrest when deprived of growth factor, but remain viable by consuming extracellular glucose

Dong, L.; Reljic, B.; Cheung, J. G.; Ng, E. S.; Lindqvist, L. M.; Elefanty, A. G.; Vaux, D. L.; Tran, H.

10.1101/198754 — cell biology — Posted on 2018-11-15

1411 Building a sequence map of the pig pan-genome from multiple de novo assemblies and Hi-C data

Tian, X.; Li, R.; Fu, W.; Li, Y.; Wang, X.; Li, M.; Du, D.; Tang, Q.; Cai, Y.; Long, Y.; Zhao, Y.; Li, M.; Jiang, Y.

10.1101/459453 — genomics — Posted on 2018-11-15

1412 Establishing a causal role for medial prefrontal cortex in reality monitoring

Subramaniam, K.; Kothare, H.; Hinkley, L.; Tarapore, P.; Nagarajan, S.

10.1101/436907 — neuroscience — Posted on 2018-11-15

1413 Several phased siRNA annotation methods can frequently misidentify 24 nucleotide siRNA-dominated PHAS loci

Polydore, S.; Lunardon, A.; Axtell, M. J.

10.1101/409417 — plant biology — Posted on 2018-11-15

1414 Human hippocampal theta oscillations reflect sequential dependencies during spatial planning.

Kaplan, R.; Tauste Campo, A.; Bush, D.; King, J.; Principe, A.; Koster, R.; Ley-Nacher, M.; Rocamora, R.; Friston, K. J.

10.1101/372011 — neuroscience — Posted on 2018-11-15

1415 Linking Neural and Clinical Measures of Glaucoma with Diffusion Magnetic Resonance Imaging (dMRI)

Miller, N. P.; Liu, Y.; Krivochenitser, R.; Rokers, B.

10.1101/370643 — neuroscience — Posted on 2018-11-15

1416 Genome-wide analyses supported by RNA-Seq reveal non-canonical splice sites in plant genomes

Pucker, B.; Brockington, S. F.

10.1101/428318 — genomics — Posted on 2018-11-15

1417 Estimating parameters from multiple time series of population dynamics using Bayesian inference

Rosenbaum, B.; Raatz, M.; Weithoff, G.; Fussmann, G. F.; Gaedke, U.

10.1101/392449 — ecology — Posted on 2018-11-15

1418 Right hemisphere superiority for executive control of attention

Spagna, A.; Kim, T. H.; Wu, T.; Fan, J.

10.1101/432732 — neuroscience — Posted on 2018-11-15

1419 Simultaneous profiling of DNA methylation and chromatin architecture in mixed populations and in single cells

Li, G.; Liu, Y.; Zhang, Y.; Fang, R.; Kellis, M.; Ren, B.

10.1101/470963 — genomics — Posted on 2018-11-15

1420 Holotomography: refractive index as an intrinsic imaging contrast for 3-D label-free live cell imaging

Kim, D.; Lee, S.; Lee, M.; Oh, J.; Yang, S.-A.; Park, Y.

10.1101/106328 — cell biology — Posted on 2018-11-15

1421 Probabilistic variable-length segmentation of protein sequences for discriminative motif discovery (DiMotif) and sequence embedding (ProtVecX)

Asgari, E.; McHardy, A.; Mofrad, M. R. K.

10.1101/345843 — bioinformatics — Posted on 2018-11-15

1422 ManiNetCluster: A Manifold Learning Approach to Reveal the Functional Linkages Across Multiple Gene Networks

Nguyen, N. D.; Blaby, I. K.; Wang, D.

10.1101/470195 — bioinformatics — Posted on 2018-11-15

1423 Multi-SNP Mediation Intersection-Union Test

Zhong, W.; Spracklen, C. N.; Mohlke, K. L.; Zheng, X.; Fine, J.; Li, Y.

10.1101/455352 — genetics — Posted on 2018-11-14

1424 Partially methylated domains are hypervariable in breast cancer and fuel widespread CpG island hypermethylation

Brinkman, A. B.; Nik-Zainal, S.; Simmer, F.; Rodriguez-Gonzalez, F. G.; Smid, M.; Alexandrov, L. B.; Butler, A.; Martin, S.; Davies, H.; Dominik, G.; Zou, X.; Ramakrishna, M.; Staaf, J.; Ringner, M.; Sieuwerts, A.; Ferrari, A.; Morganella, S.; Thomas, F.; Kristensen, V.; Gut, M.; van de Vijver, M. J.; Borresen-Dale, A.-L.; Richardson, A. L.; Thomas, G.; Gut, I. G.; Martens, J. W. M.; Foekens, J. A.; Stratton, M.; Stunnenberg, H. G.

10.1101/305193 — cancer biology — Posted on 2018-11-15

1425 Soil nutrient adequacy for optimal cassava growth, implications on cyanogenic glucoside production: a case of konzo-affected Mtwara region, Tanzania

Imakumbili, M. L. E.; Semu, E.; Semoka, J. M. R.; Abass, A.; Mkamilo, G.

10.1101/464594 — pharmacology and toxicology — Posted on 2018-11-07

1426 Drug Repurposing: The Anthelmintics Niclosamide and Nitazoxanide are Potent TMEM16A Antagonists that Fully Bronchodilate Airways

Miner, K.; Labitzke, K.; Liu, B.; Wang, P.; Henckels, K.; Gaida, K.; Elliott, R.; Chen, J. J.; Liu, L.; Leith, A.; Trueblood, E.; Hensley, K.; Xia, X.-Z.; Homann, O.; Bennett, B.; Fiorino, M.; Whoriskey, J.; Yu, G.; Escobar, S.; Wong, M.; Born, T. L.; Budelsky, A.; Comeau, M.; Smith, D.; Phillips, J.; Johnston, J. A.; McGivern, J.; Weikl, K.; Powers, D.; Kunzelmann, K.; Mohn, D.; Hochheimer, A.; Sullivan, J. K.

10.1101/254888 — physiology — Posted on 2018-11-14

1427 Comprehensive evaluation of cell-type quantification methods for immuno-oncology

Sturm, G.; Finotello, F.; Petitprez, F.; Zhang, J. D.; Baumbach, J.; Fridman, W. H.; List, M.; Aneichyk, T.

10.1101/463828 — bioinformatics — Posted on 2018-11-14

1428 Topological phase transitions in functional brain networks

Santos, F. A. N.; Raposo, E. P.; Coutinho-Filho, M. D.; Copelli, M.; Stam, C. J.; Douw, L.

10.1101/469478 — neuroscience — Posted on 2018-11-14

1429 A transcriptional cycle suited to daytime N2 fixation in the unicellular cyanobacterium Candidatus Atelocyanobacterium thalassa (UCYN-A)

Munoz-Marin, M. d. C.; Shilova, I.; Shi, T.; Farnelid, H.; Perez, A. C.; Zehr, J. P.

10.1101/469395 — ecology — Posted on 2018-11-14

1430 Excitability changes in the motor cortex in preparation for self-paced and cue-guided movements: a transcranial magnetic stimulation study

Ibanez, J.; Hannah, R.; Rocchi, L.; Rothwell, J. C.

10.1101/470153 — neuroscience — Posted on 2018-11-14

1431 Scaling computational genomics to millions of individuals with GPUs

Taylor-weiner, A.; Aguet, F.; Haradhvala, N.; Gosai, S.; Kim, J.; Ardlie, K.; Van Allen, E.; Getz, G.

10.1101/470138 — genomics — Posted on 2018-11-14

1432 From Space to Sequence and Back Again: Iterative DNA Proximity Ligation and its Applications to DNA-Based Imaging

Boulgakov, A. A.; Xiong, E.; Bhadra, S.; Ellington, A. D.; Marcotte, E. M.

10.1101/470211 — bioinformatics — Posted on 2018-11-14

1433 Novel bir’s-foot trefoil RNA viruses provide insights into a clade of legume associated enamoviruses

Debat, H. J.; Bejerman, N.

10.1101/368944 — plant biology — Posted on 2018-11-14

1434 Myocardin ablation in a cardiac-renal rat model

Mittal, A.; Rana, S.; Sharma, R.; Kumar, A.; Prasad, R.; Raut, S. K.; Sarkar, S.; Nahar, U.; Bahl, A.; Dhandapany, P. S.; Khullar, M.

10.1101/470708 — molecular biology — Posted on 2018-11-14

1435 A novel model plant to study the light control of seed germination

Merai, Z.; Graeber, K.; Wilhelmsson, P.; Ullrich, K. K.; Arshad, W.; Grosche, C.; Tarkowska, D.; Tureckova, V.; Strnad, M.; Rensing, S. A.; Leubner-Metzger, G.; Mittelsten Scheid, O.

10.1101/470401 — plant biology — Posted on 2018-11-14

1436 DNA Extraction Method Optimized for Nontuberculous Mycobacteria Long-Read Whole Genome Sequencing

Bouso, J. M.; Planet, P. J.

10.1101/470245 — microbiology — Posted on 2018-11-14

1437 Simultaneous profiling of DNA methylation and chromatin architecture in mixed populations and in single cells

Ren, B.; Li, G.; Liu, Y.; Fang, R.; Kellis, M.; Zhang, Y.

10.1101/470963 — genomics — Posted on 2018-11-14

1438 Illumina and Nanopore methods for whole genome sequencing of hepatitis B virus (HBV)

McNaughton, A. L.; Roberts, H. E.; Bonsall, D.; de Cesare, M.; Mokaya, J.; Lumley, S. F.; Golubchik, T.; Piazza, P.; Martin, J. B.; de Lara, C.; Brown, A.; Ansari, M. A.; Bowden, R.; Barnes, E.; Matthews, P. C.

10.1101/470633 — genomics — Posted on 2018-11-14

1439 PERPETUAL FLOWERING2 coordinates the vernalization response and perennial flowering in Arabis alpina

Lazaro, A.; Zhou, Y.; Giesguth, M.; Nawaz, K.; Bergonzi, S.; Pecinka, A.; Coupland, G.; Albani, M. C.

10.1101/470567 — plant biology — Posted on 2018-11-14

1440 Classification of naturally evoked compound action potentials in peripheral nerve spatiotemporal recordings

Koh, R. G. L.; Nachman, A. I.; Zariffa, J.

10.1101/469874 — neuroscience — Posted on 2018-11-14

1441 Predictability changes what we remember in familiar temporal contexts

Kim, H.; Schlichting, M. L.; Preston, A. R.; Lewis-Peacock, J. A.

10.1101/469965 — neuroscience — Posted on 2018-11-14

1442 Tcf4 encodes cortical differentiation during development

Mesman, S.; Bakker, R.; Smidt, M.

10.1101/470385 — neuroscience — Posted on 2018-11-14

1443 The Mycobacterium tuberculosis Pup-proteasome system regulates nitrate metabolism through an essential protein quality control system

Becker, S. H.; Jastrab, J. B.; Dhabaria, A.; Chaton, C.; Rush, J.; Korotkov, K. V.; Ueberheide, B.; Darwin, K. H.

10.1101/470989 — microbiology — Posted on 2018-11-14

1444 The AGC protein kinase UNICORN controls planar growth by attenuating PDK1 in Arabidopsis thaliana

Scholz, S.; Plessmann, J.; Huettl, R.; Wassmer, K.; Enugutti, B.; Schneitz, K.

10.1101/470732 — plant biology — Posted on 2018-11-14

1445 Chondrocyte-specific RUNX2 Overexpression Causes Chondrodysplasia During Development, but is Not Sufficient to Induce OA-like Articular Cartilage Degeneration in Adult Mice Without Injury

Catheline, S. E.; Hoak, D.; Chang, M.; Ketz, J. P.; Hilton, M. J.; Zuscik, M. J.; Jonason, J. H.

10.1101/470005 — pathology — Posted on 2018-11-14

1446 A systems-level analysis highlights microglial activation as a modifying factor in common forms of human epilepsy

Altmann, A.; Ryten, M.; Di Nunzio, M.; Ravizza, T.; Tolomeo, D.; Reynolds, R. H.; Somani, A.; Bacigaluppi, M.; Iori, V.; Micotti, E.; Botia, J. A.; Absil, J.; Alhusaini, S.; Alvim, M. K. M.; Auvinen, P.; Bargallo, N.; Bartolini, E.; Bender, B.; Bergo, F.; Bernardes, T.; Bernasconi, A.; Bernasconi, N.; Bernhardt, B. C.; Blackmon, K.; Braga, B.; Caligiuri, M. E.; Cavalo, A.; Carlson, C.; Carr, S.; Cavalleri, G.; Cendes, F.; Chen, J.; Chen, S.; Cherubini, A.; Concha, L.; David, P.; Delanty, N.; Depondt, C.; Devinsky, O.; Doherty, C. P.; Domin, M.; Focke, N.; Foley, S.; Franca, W.; Gambardella, A.

10.1101/470518 — neuroscience — Posted on 2018-11-14

1447 Modeling the impact of ex-nido transmitted parasites on ant colony dynamics

Quevillon, L. E.; Hughes, D. P.; Conway, J. M.

10.1101/470575 — ecology — Posted on 2018-11-14

1448 Effect of simulated microgravity on gene expression during embryogenesis of Arabidopsis thaliana

Svecerova, M.; Kovalova, M.; Ondrej, V.

10.1101/471037 — plant biology — Posted on 2018-11-14

1449 Comprehensive and quantitative analysis of white and brown adipose tissue by shotgun lipidomics

Grzybek, M.; Palladini, A.; Alexaki, V. I.; Surma, M. A.; Simons, K.; Chavakis, T.; Klose, C.; Coskun, U.

10.1101/470690 — physiology — Posted on 2018-11-14

1450 FlexiBAC: a versatile, open-source baculovirus vector system for protein expression, secretion, and proteolytic processing

Lemaitre, R. P.; Bogdanova, A.; Borgonovo, B.; Woodruff, J. B.; Drechsel, D. N.

10.1101/470955 — biochemistry — Posted on 2018-11-14

1451 A strategy to exploit surrogate sire technology in livestock breeding programs

Gottardo, P.; Gorjanc, G.; Battagin, M.; Gaynor, C. R.; Jenko, J.; Freixedes, R. R.; Whitelaw, B.; Mileham, A.; Herring, W.; Hickey, J.

10.1101/199893 — genetics — Posted on 2018-11-14

1452 Transcriptomics-based screening identifies pharmacological inhibition of Hsp90 as a means to defer aging

Janssens, G. E.; Lin, X.-X.; Millan-Arino, L.; Seinstra, R. I.; Stroustrup, N.; Nollen, E. A. A.; Riedel, C. G.

10.1101/468819 — cell biology — Posted on 2018-11-14

1453 Centrosome Loss Triggers A Transcriptional Program To Counter Apoptosis-Induced Oxidative Stress

Poulton, J. S.; McKay, D. J.; Peifer, M.

10.1101/469056 — cell biology — Posted on 2018-11-14

1454 Spatial structure arising from chase-escape interactions with crowding

Surendran, A.; Plank, M.; Simpson, M.

10.1101/470799 — biophysics — Posted on 2018-11-14

1455 A novel combination of chemotherapy and immunotherapy controls tumor growth in mice with a human immune system

Burlion, A.; Ramos, R.; Sendeyo, K.; Corneau, A.; Caux, C.; Piaggio, E.; Olive, D.; Caux, C.; Marodon, G.

10.1101/191031 — immunology — Posted on 2018-11-14

1456 Sociodemographic patterning in the oral microbiome of a diverse sample of New Yorkers

Renson, A.; Jones, H. E.; Beghini, F.; Segata, N.; Zolnik, C. P.; Usyk, M.; Moody, T. U.; Thorpe, L.; Burk, R.; Waldron, L. D.; Dowd, J. B.

10.1101/189225 — epidemiology — Posted on 2018-11-14

1457 Mechanism of Mycolactone Toxin Membrane Permeation: Atomistic vs Coarse-Grained MARTINI Simulations

Aydin, F.; Sun, R.; Swanson, J. M. J.

10.1101/470807 — biophysics — Posted on 2018-11-14

1458 Probing the effects of nonannular lipid binding on the stability of the calcium pump SERCA

Espinoza-Fonseca, L. M.

10.1101/470948 — biophysics — Posted on 2018-11-14

1459 Quantifying the mechanics and growth of cells and tissues in 3D using high resolution computational models.

Van Liedekerke, P.; Neitsch, J.; Johann, T.; Warmt, E.; Grosser, S.; Gonzales Valverde, I.; Kaes, J.; Hoehme, S.; Drasdo, D.

10.1101/470559 — bioengineering — Posted on 2018-11-14

1460 Nanoscale decompaction of nucleosomal DNA revealed through multi-color super-resolution microscopy

Otterstrom, J.; Castells Garcia, A.; Vicario, C.; Cosma, M. P.; Lakadamyali, M.

10.1101/470823 — cell biology — Posted on 2018-11-14

1461 Detailed structural orchestration of Lewy pathology in Parkinson’s disease as revealed by 3D multicolor STED microscopy

Moors, T. E.; Maat, C. A.; Niedieker, D.; Mona, D.; Petersen, D.; Timmermans-Huisman, E.; Kole, J.; El-Mashtoly, S. F.; Zago, W.; Barbour, R.; Mundigl, O.; Kaluza, K.; Huber, S.; Hug, M. N.; Kremer, T.; Ritter, M.; Dziadek, S.; Geurts, J. J. G.; Gerwert, K.; Britschgi, M.; van de Berg, W. D. J.

10.1101/470476 — neuroscience — Posted on 2018-11-14

1462 The lipid phosphatase-like protein PLPPR1 increases cell adhesion by modulating RhoA/Rac1 activity

Agbaegbu Iweka, C.; Tilve, S.; Katagiri, Y.; Geller, H.

10.1101/470914 — neuroscience — Posted on 2018-11-14

1463 Place cell firing cannot support navigation without intact septal circuits

Bolding, K. A.; Ferbinteanu, J.; Fox, S. E.; Muller, R. U.

10.1101/470088 — neuroscience — Posted on 2018-11-14

1464 Rgs12 enhances osteoclastogenesis by suppressing Nrf2 activity and promoting the formation of reactive oxygen species

Ng, A. Y. H.; Li, Z.; Jones, M. M.; Tu, C.; Oursler, M. J.; Qu, J.; Yang, S.

10.1101/470542 — cell biology — Posted on 2018-11-14

1465 Are working memory training effects paradigm-specific?

Holmes, J.; Woolgar, F.; Hampshire, A.; Gathercole, S. E.

10.1101/450023 — neuroscience — Posted on 2018-11-14

1466 Cellular and Synaptic Phenotype Compensations Limit Circuit Disruption in Fmr1-KO Mouse Layer 4 Barrel Cortex but Fail to Prevent Deficits in Information Processing

Domanski, A. P.; Booker, S.; Wyllie, D.; Isaac, J.; Kind, P.

10.1101/403725 — neuroscience — Posted on 2018-11-14

1467 Association of brain age with smoking, alcohol consumption, and genetic variants

Ning, K.; Zhao, L.; Matloff, W.; Sun, F.; Toga, A.

10.1101/469924 — neuroscience — Posted on 2018-11-14

1468 Bayesian reassessment of the epigenetic architecture of complex traits

Trejo Banos, D.; McCartney, D. L.; Battram, T.; Hemani, G.; Walker, R. M.; Morris, S. W.; Zhang, Q.; Porteous, D. J.; McRae, A. F.; Wray, N. R.; Visscher, P. M.; Haley, C. S.; Evans, K. L.; Deary, I. J.; McIntosh, A. M.; Marioni, R. E.; Robinson, M. R.

10.1101/450288 — genomics — Posted on 2018-11-14

1469 Senescent cells and the dynamics of aging

Karin, O.; Agrawal, A.; Porat, Z.; Krizhanovsky, V.; Alon, U.

10.1101/470500 — systems biology — Posted on 2018-11-14

1470 Noncontractile tissue forces mask muscle fiber forces underlying muscle spindle Ia afferent firing rates in stretch of relaxed rat muscle

Blum, K. P.; Nardelli, P.; Cope, T. C.; Ting, L. H.

10.1101/470302 — neuroscience — Posted on 2018-11-14

1471 What is in Your Gamma? Activation of The Ventral Fronto-Parietal Attentional Network in Response to Distracting Sounds

ElShafei, H. A.; Fornoni, L.; Masson, R.; Bertrand, O.; Bidet-Caulet, A.

10.1101/469783 — neuroscience — Posted on 2018-11-14

1472 Emotion Schemas are Embedded in the Human Visual System

Kragel, P. A.; Reddan, M.; LaBar, K. S.; Wager, T. D.

10.1101/470237 — neuroscience — Posted on 2018-11-14

1473 Excitability changes in the motor cortex in preparation for self-paced and cue-guided movements: a transcranial magnetic stimulation study

Ibanez, J.; Hannah, R.; Rocchi, L.; Rothwell, J. C.

10.1101/470153 — neuroscience — Posted on 2018-11-14

1474 PP4 phosphatase cooperates in recombinational DNA repair by enhancing double-strand break end resection

Villoria, M. T.; Gutierrez-Escribano, P.; Ramos, F.; Alonso-Rodriguez, E.; Merino, E.; Montoya, A.; Kramer, H.; Aragon, L.; Clemente-Blanco, A.

10.1101/470427 — molecular biology — Posted on 2018-11-14

1475 On the optimal design of metabolic RNA labeling experiments.

Uvarovskii, A.; Naarmann-de Vries, I.; Dieterich, C.

10.1101/428862 — bioinformatics — Posted on 2018-11-14

1476 Neuron density fundamentally relates to architecture and connectivity of the primate cerebral cortex

Beul, S. F.; Hilgetag, C. C.

10.1101/117051 — neuroscience — Posted on 2018-11-14

1477 Comparative transcriptome and proteome profiling of the chlorophyll metabolism pathway in four cultivars of Magnolia officinalis

Wu, Q.; Wei, D.; Liu, Y.; Ren, C.; Liu, Q.; Chen, C.; Chen, J.; Pei, J.

10.1101/470880 — bioinformatics — Posted on 2018-11-14

1478 Tryptophan nitration physiologically regulates cardiac lactate dehydrogenase active site loop mobility and activity

10.1101/348789 — biochemistry — Posted on 2018-11-14

1479 Dust or disease? Perceptions of influenza in rural Southern Malawi

Phiri, M.; Gooding, K.; Peterson, I.; Mambule, I.; Nundwe, S.; McMorrow, M.; Desmond, N.

10.1101/470856 — pathology — Posted on 2018-11-14

1480 Genetics of Cocaine and Methamphetamine Consumption and Preference in Drosophila melanogaster

Highfill, C.; Baker, B.; Stevens, S.; Anholt, R. R. H.; Mackay, T.

10.1101/470906 — genomics — Posted on 2018-11-14

1481 Relationship between epicardial and perivascular fatty tissue and adipokine-cytokine level in coronary artery disease patients

Gruzdeva, O.; Uchasova, E.; Dyleva, Y.; Borodkina, D.; Akbasheva, O.; Karetnikova, V.; Brel, N.; Alexander, K.; Barbarash, O.

10.1101/470872 — biochemistry — Posted on 2018-11-14

1482 Knowledge, Attitudes and Practices of Hepatitis B Prevention and Immunization of Pregnant Women and Mothers in Viet Nam

Pham, T. T. H.; Nguyen, T. X.; Nguyen, D. T.; Luu, C. M.; Truong, B. D.; Tran, P. D.; Pham, H.; Asian Liver Center at Stanford University, Stanford, California, USA {superscript 2} General Department of P,

10.1101/470849 — epidemiology — Posted on 2018-11-14

1483 Topological phase transitions in functional brain networks

Santos, F. A. N.; Raposo, E. P.; Coutinho-Filho, M. D.; Copelli, M.; Stam, C. J.; Douw, L.

10.1101/469478 — neuroscience — Posted on 2018-11-14

1484 Ribosomal stress-induced senescence as a novel pro-senescence strategy for p16 positive basal-like breast cancer

Moore, M.; Gammon, L.; Dreger, S.; Koh, J.; Garbe, J. C.; Stampfer, M. R.; Philpott, M. P.; Jones, L. J.; Bishop, C. L.

10.1101/469445 — cancer biology — Posted on 2018-11-14

1485 Correlation of Remodeling Brain and Phenotype Behavior in the Comorbidity of the Chronic Obstructive Pulmonary Disease and Acute Cerebral Ischemia in Animal Model

Plekhova, N. G.; Geltcer, B. I.; Zinoviev, S. V.; Zayats, Y. V.

10.1101/469353 — pathology — Posted on 2018-11-14

1486 Neural envelope tracking as a measure of speech understanding in cochlear implant users

Verschueren, E.; Somers, B.; Francart, T.

10.1101/469643 — neuroscience — Posted on 2018-11-14

1487 Investigating the phenotypic consistency and genetic architecture of noncognitive skills.

Morris, T. T.; Davey Smith, G.; Van den Berg, G.; Davies, N. M.

10.1101/470682 — genetics — Posted on 2018-11-14

1488 Covalent Aurora A regulation by the metabolic integrator coenzyme A

Tsuchiya, Y.; Byrne, D.; Burgess, S.; Bormann, J.; Bakovic, J.; Huang, Y.; Zhyvoloup, A.; Peak-Chew, S.; Tran, T.; Bellany, F.; Tabor, A.; Chan, E.; Guruprasad, L.; Garifulin, O.; Filonenko, V.; Ferries, S.; Eyers, C.; Carroll, J.; Skehel, M.; Bayliss, R.; Eyers, P.; Gout, I.

10.1101/469585 — biochemistry — Posted on 2018-11-14

1489 Adaptations during maturation in an identified honeybee interneuron responsive to waggle dance vibration signals

Kumaraswamy, A.; Ai, H.; Kai, K.; Ikeno, H.; Wachtler, T.

10.1101/469502 — neuroscience — Posted on 2018-11-14

1490 Spatial trophic cascades in communities connected by dispersal and foraging

Garcia-Callejas, D.; Molowny-Horas, R.; B. Araujo, M.; Gravel, D.

10.1101/469486 — ecology — Posted on 2018-11-14

1491 Molecular aspects of multivalent engagement between Syk and FcϵRIγ

Travers, T.; Kanagy, W.; Jhamba, E.; Goldstein, B.; Lidke, D. S.; Wilson, B. S.; Gnanakaran, S.

10.1101/469148 — biophysics — Posted on 2018-11-14

1492 Dietary salt promotes cognitive impairment through tau phosphorylation

Faraco, G.; Hochrainer, K.; Segarra, S. G.; Schaeffer, S.; Santisteban, M. M.; Menon, A.; Jiang, H.; Holtzman, D. M.; Anrather, J.; Iadecola, C.

10.1101/470666 — neuroscience — Posted on 2018-11-14

1493 Mesoscale correlation structure with single cell resolution during visual coding

Yu, Y.; Stirman, J. N.; Dorsett, C. R.; Smith, S. L.

10.1101/469114 — neuroscience — Posted on 2018-11-14

1494 Genetic loss of the ubiquitin ligase RNF126, an AID interacting partner and modifier, affects strand targeting during somatic hypermutation of antibody genes

Economos, N. G.; Delker, R. K.; Stavropoulos, P.; Papavasiliou, F. N.

10.1101/469775 — immunology — Posted on 2018-11-14

1495 Precursor miRNAs are trafficked along axons associated with vesicles and locally processed to regulate growth cone steering

Corradi, E.; Gavoci, A.; Strohbuecker, S.; Roccuzzo, M.; Dalla Costa, I.; Iyer, A.; Bridi, S.; Santoz Rodriguez, G.; Abreu-Goodger, C.; Baudet, M.-L.

10.1101/470393 — cell biology — Posted on 2018-11-14

1496 Structural insights into substrate recognition by the SOCS2 E3 ubiquitin ligase

Kung, W.-W.; Ramachandran, S.; Makukhin, N.; Bruno, E.; Ciulli, A.

10.1101/470187 — biochemistry — Posted on 2018-11-14

1497 Disordered breathing in a mouse model of Dravet syndrome

Mulkey, D. K.; Kuo, F.-S.; LoTurco, J. L.; Chen, X.

10.1101/470609 — neuroscience — Posted on 2018-11-14

1498 Time-course Pattern of Cell Degeneration in a Mouse with Cochlear Hair Cell Impaired Potassium Outflow

Carignano, C.; Barila, E. P.; Rias, E. I.; Dionisio, L.; Aztiria, E.; Spitzmaul, G.

10.1101/469676 — neuroscience — Posted on 2018-11-14

1499 Runs of Homozygosity in sub-Saharan African populations provide insights into a complex demographic and health history

Ceballos, F. C.; Hazelhurst, S.; Ramsay, M.

10.1101/470583 — genomics — Posted on 2018-11-14

1500 A platform for case-control matching enables association studies without genotype sharing

Artomov, M.; Loboda, A. A.; Artyomov, M. N.; Daly, M.

10.1101/470450 — genetics — Posted on 2018-11-14

1501 Long-term coexistence and regional heterogeneity of antibiotic-resistant infections reproduced by a simple spatial model

Krieger, M. S.; Hill, A. L.

10.1101/469171 — epidemiology — Posted on 2018-11-14

1502 Bayesian Shrinkage Estimation of High Dimensional Causal Mediation Effects in Omics Studies

Song, Y.; Zhou, X.; Zhang, M.; Zhao, W.; Liu, Y.; Kardia, S.; Diez Roux, A.; Needham, B.; Smith, J. A.; Mukherjee, B.

10.1101/467399 — epidemiology — Posted on 2018-11-14

1503 Tobacco exposure associated with oral microbiota oxygen utilization in the New York City Health and Nutrition Examination Study

Beghini, F.; Renson, A.; Zolnik, C.; Geistlinger, L.; Usyk, M.; Moody, T. U.; Thorpe, L.; Dowd, J. B.; Burk, R.; Segata, N.; Jones, H. E.; Waldron, L. D.

10.1101/470286 — epidemiology — Posted on 2018-11-14

1504 Source-sink dynamics could sustain HIV epidemics in rural communities in sub-Saharan Africa: the case of Malawi

Okano, J. T.; Sharp, K.; Palk, L.; Blower, S.

10.1101/468298 — epidemiology — Posted on 2018-11-14

1505 A retrospective assessment of temperature trends in northern Europe reveals a deep impact on the life cycle of Ixodes ricinus (Acarina: Ixodidae).

Estrada-Pena, A.

10.1101/467811 — epidemiology — Posted on 2018-11-14

1506 Injury-free priming: induction of Primary Afferent Collateral Sprouting in uninjured sensory neurons in vivo primes them for enhanced axon outgrowth in vitro.

Soleman, S.; Petruska, J. C.; Moon, L. D. F.

10.1101/463935 — neuroscience — Posted on 2018-11-14

1507 Previewing a face in the periphery reduces the fN170: Combined EEG and eye-tracking suggests two stages of trans-saccadic predictive processes

Huber-Huber, C.; Buonocore, A.; Hickey, C.; Melcher, D.

10.1101/468900 — neuroscience — Posted on 2018-11-14

1508 Oligomeric α-synuclein-specific degradation by HtrA2/Omi to bestow a neuroprotective function

Hong, S.-T.; Chung, H.-J.; Jamal, M. A. H. M.; Rahman, M. M.; Kim, H.-J.

10.1101/468967 — neuroscience — Posted on 2018-11-14

1509 A factorial cluster-randomised controlled trial combining home-environmental and early child development interventions to improve child health and development: rationale, trial design and baseline findings.

Hartinger, S. M.; Nuno Martinez, N.; Hattendorf, J.; Verastegui, H.; Ortiz, M.; Mäusezahl, D.

10.1101/465856 — clinical trials — Posted on 2018-11-14

1510 The Toll pathway inhibits tissue growth and regulates cell fitness in an infection-dependent manner

Germani, F.; Hain, D.; Sternlicht, D.; Moreno, E.; Basler, K.

10.1101/470419 — developmental biology — Posted on 2018-11-14

1511 Unlimited genetic switches for cell-type specific manipulation

Garcia-Marques, J.; Yang, C.-P.; Espinosa-Medina, I.; Mok, K.; Koyama, M.; Lee, T.

10.1101/470443 — developmental biology — Posted on 2018-11-14

1512 Mapping transcriptionally equivalent populations across single cell RNA-seq datasets

Boufea, K.; Seth, S.; Batada, N. N.

10.1101/470203 — bioinformatics — Posted on 2018-11-14

1513 Organoid single-cell profiling identifies a transcriptional signature of glomerular disease

Harder, J. L.; Menon, R.; Otto, E. A.; Zhou, J.; Eddy, S.; Wys, N. L.; Nair, V.; Cebrian, C.; Spence, J.; Troyanskaya, O. G.; Hodgin, J.; Wiggins, R. C.; Freedman, B. S.; Kretzler, M.; European Renal cDNA Bank, ; Nephrotic Syndrome Study Network,

10.1101/468850 — systems biology — Posted on 2018-11-14

1514 IL-11 neutralising therapies target hepatic stellate cell-induced liver inflammation and fibrosis in NASH

Widjaja, A. A.; Singh, B. K.; Adami, E.; Viswanathan, S.; D'Agostino, G. A.; Dong, J. R.; Ng, B.; Tan, J.; Paleja, B. S.; Tripathi, M.; Lim, S. Y.; Chothani, S.; Lim, W. W.; Rabes, A.; Sombetzki, M.; Bruinstroop, E.; Sinha, R. A.; Albani, S.; Yen, P. M.; Schafer, S.; Cook, S. A.

10.1101/470062 — molecular biology — Posted on 2018-11-14

1515 Proliferation Saturation Index in an adaptive Bayesian approach to predict patient-specific radiotherapy responses

Sunassee, E. D.; Tan, D.; Ji, T.; Brady, R.; Moros, E. G.; Caudell, J. J.; Yartsev, S.; Enderling, H.

10.1101/469957 — cancer biology — Posted on 2018-11-14

1516 Enzymatic and structural characterization of the Naegleria fowleri glucokinase

Milanes, J. E.; Suryadi, J.; Abendroth, J.; Van Voorhis, W. C.; Barrett, K. F.; Dranow, D. M.; Phan, I. Q.; Patrick, S. L.; Rozema, S. D.; Khalifa, M. M.; Golden, J. E.; Morris, J. C.

10.1101/469072 — biochemistry — Posted on 2018-11-14

1517 Virus genomes from deep sea sediments expand the ocean megavirome and support independent origins of viral gigantism

Backstrom, D.; Yutin, N.; Jorgensen, S. L.; Dharamshi, J.; Homa, F.; Zaremba-Niedwiedzka, K.; Spang, A.; Wolf, Y. I.; Koonin, E. V.; Ettema, T. J. G.

10.1101/469403 — microbiology — Posted on 2018-11-14

1518 Cell-intrinsic Wnt4 controls early cDC1 commitment and suppresses development of pathogen-specific Type 2 immunity

Hung, L.-Y.; Ji, Y.; Christian, D.; Herbine, K.; Pastore, C.; Herbert, D.

10.1101/469155 — immunology — Posted on 2018-11-14

1519 TGF-b2, catalase activity, H2O2 output and metastatic potential of diverse types of tumour

Haidar, M.; Metheni, M.; Batteux, F.; Langsley, G.

10.1101/467191 — cancer biology — Posted on 2018-11-14

1520 ManiNetCluster: A Manifold Learning Approach to Reveal the Functional Linkages Across Multiple Gene Networks

Nguyen, N. D.; Blaby, I. K.; Wang, D.

10.1101/470195 — bioinformatics — Posted on 2018-11-14

1521 The landscapes of DNA methylation associated with the transcriptomic network in laying hens and broilers get insight to embryonic muscle development in chicken

Liu, Z.; Shen, X.; Han, S.; Wang, Y.; Zhu, Q.; Cui, C.; He, H.; Zhao, J.; Chen, Y.; Zhang, Y.; Ye, L.; Zhang, Z.; Liu, D.; Zhao, X.; Yin, H.

10.1101/470278 — bioinformatics — Posted on 2018-11-14

1522 High Resolution Comparison of Cancer-Related Developmental Processes Using Trajectory Alignment

Alpert, A.; Starosvetsky, E.; Hayun, M.; Ofran, Y.; Shen-Orr, S.

10.1101/469601 — systems biology — Posted on 2018-11-14

1523 Cell-type-specific genomics reveals histone modification dynamics in mammalian meiosis

Lam, K. W. G.; Brick, K.; Cheng, G.; Pratto, F.; Camerini-Otero, R. D.

10.1101/469908 — genomics — Posted on 2018-11-14

1524 Phenome-wide investigation of health outcomes associated with genetic predisposition to loneliness

Abdellaoui, A.; Sanchez-Roige, S.; Sealock, J.; Treur, J. L.; Dennis, J.; Fontanillas, P.; Elson, S.; The 23andme Research Team, ; Nivard, M. G.; Ip, H. F.; van der Zee, M.; Baselmans, B.; Hottenga, J. J.; Willemsen, G.; Mosing, M.; Yu, L.; Pedersen, N. L.; Amin, N.; van Duijn, C. M.; Szilagyi, I.; Tiemeier, H.; Neumann, A.; Verweij, K.; Cacioppo, S.; Cacioppo, J. T.; Davis, L. K.; Palmer, A. A.; Boomsma, D. I.

10.1101/468835 — genetics — Posted on 2018-11-14

1525 A transcriptional cycle suited to daytime N2 fixation in the unicellular cyanobacterium Candidatus Atelocyanobacterium thalassa (UCYN-A)

Zehr, J.; Shilova, I.; Munoz-Marin, M. d. C.; Farnelid, H.; Shi, T.; Perez, A. C.

10.1101/469395 — ecology — Posted on 2018-11-14

1526 Cell growth dilutes the cell cycle inhibitor Rb to trigger cell division

Zatulovskiy, E.; Berenson, D. F.; Topacio, B. R.; Skotheim, J. M.

10.1101/470013 — cell biology — Posted on 2018-11-14

1527 Geocoding genomic databases using GBIF

Page, R. D. M.

10.1101/469650 — bioinformatics — Posted on 2018-11-14

1528 ACME: Pan-specific peptide-MHC class I binding prediction through attention-based deep neural networks

Hu, Y.; Wang, Z.; Hu, H.; Wan, F.; Chen, L.; Xiong, Y.; Wang, X.; Zhao, D.; Huang, W.; Zeng, J.

10.1101/468363 — bioinformatics — Posted on 2018-11-14

1529 Open Humans: A platform for participant-centered research and personal data exploration

Greshake Tzovaras, B.; Arvai, K.; Dulaney, M.; Estrada-Galinanes, V.; Gunderson, B.; Head, T.; Lewis, D.; Nov, O.; Shaer, O.; Bobe, J.; Price Ball, M.

10.1101/469189 — bioinformatics — Posted on 2018-11-14

1530 Revisiting tradeoffs in Rubisco kinetic parameters

Flamholz, A.; Prywes, N.; Moran, U.; Davidi, D.; Bar-On, Y.; Oltrogge, L.; Savage, D.; Milo, R.

10.1101/470021 — systems biology — Posted on 2018-11-14

1531 Genetic selection for small molecule production in competitive microfluidic droplets

Millet, L.; Velez, J.; Michener, J.

10.1101/469007 — synthetic biology — Posted on 2018-11-14

1532 HPV detection and genotyping of FFPE head and neck cancer biopsies by molecular testing to address new oropharyngeal squamous cell carcinoma classification based on HPV status

Veyer, D.; Wack, M.; Grard, O.; Bonfils, P.; Hans, S.; Belec, L.; Badoual, C.; Pere, H.

10.1101/469387 — molecular biology — Posted on 2018-11-14

1533 Dehydrojuncusol, a Natural Phenanthrene Compound Extracted from Juncus maritimus Is a New Inhibitor of Hepatitis C Virus Replication

Sahuc, M.-E.; Sahli, R.; Riviere, C.; Pene, V.; Lavie, M.; Vandeputte, A.; Brodin, P.; Rosenberg, A.; Dubuisson, J. D.; Ksouri, R.; Rouille, Y.; Sahpaz, S.; Seron, K.

10.1101/469361 — microbiology — Posted on 2018-11-14

1534 The stem rust fungus Puccinia graminis f. sp. tritici induces waves of small RNAs with opposing profiles during wheat infection

Sperschneider, J.; Jacques, S.; Xu, B.; Upadhyaya, N.; Mago, R.; Singh, K.; Stone, E.; Wang, M.-B.; Dodds, P.; Taylor, J.

10.1101/469338 — microbiology — Posted on 2018-11-14

1535 Scaling computational genomics to millions of individuals with GPUs

Taylor-weiner, A.; Aguet, F.; Haradhvala, N.; Gosai, S.; KIM, J.; Ardlie, K.; Van Allen, E.; Getz, G.

10.1101/470138 — genomics — Posted on 2018-11-14

1536 Bidirectional selection for body weight on standing genetic variation in a chicken model

Lillie, M.; Honaker, C. F.; Siegel, P. B.; Carlborg, O.

10.1101/469049 — genomics — Posted on 2018-11-14

1537 Chondroitin sulfate proteoglycan Windpipe modulates Hedgehog signaling in Drosophila

Takemura, M.; Noborn, F.; Nilsson, J.; Nakato, E.; Su, T.-Y.; Larson, G.; Nakato, H.

10.1101/470096 — cell biology — Posted on 2018-11-14

1538 A mathematical framework for modelling the metastatic spread of cancer

Franssen, L. C.; Lorenzi, T.; Burgess, A. F.; Chaplain, M. A.

10.1101/469536 — cancer biology — Posted on 2018-11-14

1539 The structural basis for release factor activation during translation termination revealed by time-resolved cryogenic electron microscopy

Fu, Z.; Indrisiunaite, G.; Kaledhonkar, S.; Shah, B.; Sun, M.; Chen, B.; Grassucci, R. A.; Ehrenberg, M.; Frank, J.

10.1101/470047 — biophysics — Posted on 2018-11-14

1540 Unbiased detection of CRISPR off-targets in vivo using DISCOVER-Seq

Wienert, B.; Wyman, S. K.; Richardson, C. D.; Yeh, C. D.; Akcakaya, P.; Porritt, M. J.; Morlock, M.; Vu, J. T.; Kazane, K. R.; Watry, H. L.; Judge, L. M.; Conklin, B. R.; Maresca, M.; Corn, J. E.

10.1101/469635 — molecular biology — Posted on 2018-11-14

1541 Exposure to graphene oxide sheets alters the expression of reference genes used for real-time RT-qPCR normalization

de Lazaro, I.; Kostarelos, K.

10.1101/469304 — molecular biology — Posted on 2018-11-14

1542 Towards best-practice approaches for CRISPR/Cas9 gene engineering

Van Campenhout, C.; Cabochette, P.; Veillard, A.-C.; Laczik, M.; Zelisko-Schmidt, A.; Sabatel, C.; Vanhollebeke, B.; Gueydan, C.; Kruys, V.

10.1101/469544 — molecular biology — Posted on 2018-11-14

1543 Alterations in sialic-acid O-acetylation glycoforms during murine erythrocyte development

Mahajan, V.; Alsufyani, F.; Mattoo, H.; Rosenberg, I.; Pillai, S.

10.1101/469254 — immunology — Posted on 2018-11-14

1544 Miniaturization technologies for cost effective AmpliSeq library preparation for next generation sequencing

Ogiso-Tanaka, E.; Kaga, A.; Hajika, M.

10.1101/467464 — genomics — Posted on 2018-11-14

1545 Extensive programmed ribosomal frameshifting in human as revealed by a massively parallel reporter assay

Mikl, M.; Alon, A.; Mordret, E.; Pilpel, Y.; Segal, E.

10.1101/469692 — genomics — Posted on 2018-11-14

1546 On ‘Reverse’ Regression for Robust Genetic Association Studies and Allele Frequency Estimation with Related Individuals

Zhang, L.; Sun, L.

10.1101/470328 — genetics — Posted on 2018-11-14

1547 Higher order assembly of Sorting Nexin 16 controls tubulation and distribution of neuronal endosomes

Wang, S.; Zhao, Z.; Rodal, A. A.

10.1101/469932 — cell biology — Posted on 2018-11-14

1548 VCF/Plotein: A web application to facilitate the clinical interpretation of genetic and genomic variants from exome sequencing projects

Ossio, R.; Anaya-Mancilla, D. S.; Garcia-Salinas, O. I.; Garcia-Sotelo, J. S.; Aguilar, L. A.; Adams, D. J.; Robles-Espinoza, C.

10.1101/466490 — bioinformatics — Posted on 2018-11-14

1549 Family reunion via error correction: An efficient analysis of duplex sequencing data

Stoler, N.; Arbeithuber, B.; Povysil, G.; Heinzl, M.; Salazar, R.; Makova, K.; Tiemann-Boege, I.; Nekrutenko, A.

10.1101/469106 — bioinformatics — Posted on 2018-11-14

1550 Dual cryo-radiofrequency ablation enhances lesion depth in beating human left ventricular preparations

Sulkin, M.; Laughner, J.; Rogge, M.; Philpott, J.; Efimov, I. R.

10.1101/469882 — bioengineering — Posted on 2018-11-14

1551 The iPSC proteomic compendium

Brenes, A.; Bensaddek, D.; Hukelmann, J.; Afzal, V.; Lamond, A. I.

10.1101/469916 — biochemistry — Posted on 2018-11-14

1552 ForestQC: quality control on genetic variants from next-generation sequencing data using random forest

Li, J.; Jew, B.; Zhan, L.; Hwang, S.; Coppola, G.; Freimer, N. B.; Sul, J. H.

10.1101/444828 — bioinformatics — Posted on 2018-11-13

1553 From Space to Sequence and Back Again: Iterative DNA Proximity Ligation and its Applications to DNA-Based Imaging

Boulgakov, A. A.; Xiong, E.; Bhadra, S.; Ellington, A. D.; Marcotte, E. M.

10.1101/470211 — bioinformatics — Posted on 2018-11-14

1554 SVXplorer: Identification of structural variants through overlap of discordant clusters

Kathuria, K.; Ratan, A.

10.1101/469981 — bioinformatics — Posted on 2018-11-14

1555 Drop-In Biofuel production by using fatty acid photodecarboxylase from Chlorella variabilis in the oleaginous yeast Yarrowia lipolytica.

Bruder, S.; Moldenhauer, E.; Ledesma-Amaro, R.; Kabisch, J.

10.1101/468876 — bioengineering — Posted on 2018-11-14

1556 Model-Aware Deep Learning Based Strategies for Clutter Suppression in Contrast Enhanced Ultrasound

Solomon, O.; Cohen, R.; Zhang, Y.; Yang, Y.; Qiong, H.; Ma, D.; van Sloun, R. J.; Dai, Z.; Luo, J.; Eldar, Y. C.

10.1101/469437 — bioengineering — Posted on 2018-11-14

1557 Activation of rod input in a model of retinal degeneration reverses retinal remodeling and induces formation of normal synapses, circuitry and visual signaling in the adult retina

Wang, T.; Pahlberg, J.; Cafaro, J.; Sampath, A. P.; Field, G. D.; Chen, J.

10.1101/469221 — neuroscience — Posted on 2018-11-13

1558 Impact of a Patient-Derived Hepatitis C Viral RNA Genome with a Mutated MicroRNA Binding Site

Mata, M.; Neben, S.; Majzoub, K.; Carette, J.; Sarnow, P.

10.1101/469841 — microbiology — Posted on 2018-11-13

1559 Predicting E. coli concentrations using limited qPCR deployments at Chicago beaches

Lucius, N.; Rose, K.; Osborn, C.; Sweeney, M. E.; Chesak, R.; Little, D. Y.; Beslow, S.; Schenk, T.

10.1101/250480 — bioinformatics — Posted on 2018-11-13

1560 Identifying (un)controllable dynamical behavior in complex networks

Rozum, J. C.; Albert, R.

10.1101/236323 — systems biology — Posted on 2018-11-13

1561 Muller’s Ratchet in Asexual Populations Doomed to Extinction

Chipkin, L.; Olofsson, P.; Daileda, R. C.; Azevedo, R. B. R.

10.1101/448563 — evolutionary biology — Posted on 2018-11-13

1562 Knock-in rat lines with Cre recombinase at the dopamine D1 and adenosine 2a receptor loci.

Pettibone, J. R.; Yu, J. Y.; Derman, R. C.; Hughes, E. D.; Filipiak, W. E.; Zeidler, M. G.; Saunders, T. L.; Ferrario, C. R.; Berke, J. D.

10.1101/455337 — neuroscience — Posted on 2018-11-13

1563 Subcortical theta oscillations alternate with high amplitude neocortical population within synchronized states

Munro Krull, E.; Sakata, S.; Toyoizumi, T.

10.1101/453837 — neuroscience — Posted on 2018-11-13

1564 Interleukin-6 Receptor Signalling and Abdominal Aortic Aneurysm Growth Rates

Paige, E.; Clement, M.; Lareyre, F.; Sweeting, M.; Raffort, J.; Grenier, C.; Finigan, A.; Harrison, J.; Peters, J. E.; Sun, B. B.; Butterworth, A. S.; Harrison, S. C.; Bown, M. J.; Lindholt, J. S.; Badger, S. A.; Kullo, I. J.; Powell, J.; Norman, P. E.; Scott, D. J. A.; Bailey, M. A.; Rose-John, S.; Danesh, J.; Freitag, D. F.; Paul, D. S.; Mallat, Z.

10.1101/428516 — genetics — Posted on 2018-11-13

1565 Quantified ensemble 3D surface features modeled as a window on centric diatom valve morphogenesis

Pappas, J. L.

10.1101/468884 — evolutionary biology — Posted on 2018-11-13

1566 Statistically consistent divide-and-conquer pipelines for phylogeny estimation using NJMerge

Molloy, E. K.; Warnow, T.

10.1101/469130 — evolutionary biology — Posted on 2018-11-13

1567 Culling less fit neurons protects against amyloid-β induced brain damage and cognitive and motor decline

Coelho, D. S.; Schwartz, S.; Merino, M. M.; Hauert, B.; Topfel, B.; Tieche, C.; Rhiner, C.; Moreno, E.

10.1101/468868 — developmental biology — Posted on 2018-11-13

1568 Neuropilin 1 mediates epicardial activation and revascularization in the regenerating zebrafish heart

Lowe, V.; Wisniewski, L.; Sayers, J.; Frankel, P.; Mercader, N.; Zachary, I. C.; Pellet-Many, C. A.

10.1101/468504 — developmental biology — Posted on 2018-11-13

1569 Single-cell RNA-seq of the Developing Cardiac Outflow Tract Reveals Convergent Development of the Vascular Smooth Muscle Cells at the Base of the Great Arteries

Liu, X.; Chen, W.; Li, W.; Priest, J. R.; Wang, J.; Zhou, Z.

10.1101/469346 — developmental biology — Posted on 2018-11-13

1570 CAT tails drive on- and off-ribosome degradation of stalled polypeptides

Sitron, C. S.; Brandman, O.

10.1101/469296 — cell biology — Posted on 2018-11-13

1571 Precisely control mitochondrial membrane potential with light to manipulate cell fate decisions

Ernst, P.; Xu, N.; Song, J.; Qu, J.; Chen, H.; Goldberg, M. S.; Zhang, J.; O'Rourke, B.; Liu, X.; Zhou, L.

10.1101/469668 — cell biology — Posted on 2018-11-13

1572 A dual function of FGF signaling in Xenopus left-right axis formation

Schneider, I.; Kreis, J.; Schweickert, A.; Blum, M.; Vick, P.

10.1101/469791 — developmental biology — Posted on 2018-11-13

1573 A Scube2-Shh feedback loop links morphogen release to morphogen signaling to enable scale invariant patterning of the ventral neural tube

Collins, Z.; Ishimatsu, K.; Tsai, T.; Megason, S.

10.1101/469239 — developmental biology — Posted on 2018-11-13

1574 LINGO3 interacts with Trefoil factor 2 to enforce mucosal barrier integrity and drive tissue repair during colitis

Zullo, K.; Ji, Y.; Wei, Y.; Herbine, K.; Maloney, N.; Cohen, R.; Pastore, C.; Samsouk, M.; Srivatsa, S.; Hung, L. Y.; Kohanski, M.; Cohen, N.; Herbert, D.

10.1101/469684 — cell biology — Posted on 2018-11-13

1575 The convergent evolution of eusociality is based on a shared reproductive groundplan plus lineage-specific sets of plastic genes

Warner, M. R.; Qiu, L.; Holmes, M. J.; Mikheyev, A. S.; Linksvayer, T. A.

10.1101/454645 — evolutionary biology — Posted on 2018-11-13

1576 ABC-transporter activity and eicosanoid-signaling are required for germ cell migration a basal chordate

Kassmer, S. H.; Rodriguez, D. F.; De Tomaso, A. W.

10.1101/469098 — developmental biology — Posted on 2018-11-13

1577 Scleraxis Lineage Cells Contribute to Organized Bridging Tissue During Tendon Healing, and Identifies Subpopulations of Resident Tendon Cells

Best, K. T.; Loiselle, A.

10.1101/469619 — cell biology — Posted on 2018-11-13

1578 Chromatin Compaction by Small RNAs and the Nuclear RNAi Machinery in C. elegans

Fields, B. D.; Kennedy, S.

10.1101/469866 — cell biology — Posted on 2018-11-13

1579 TFF3 is a ligand for LINGO2 that de-represses EGFR to control disease outcome during colitis and gastrointestinal nematode infection

Ji, Y.; Wei, Y.; Park, J.; Hung, L. Y.; Young, T.; Herbine, K.; Oniskey, T.; Pastore, C.; Nieves, W.; Somsouk, M.; Herbert, D.

10.1101/469700 — cell biology — Posted on 2018-11-13

1580 Overcoming bottlenecks for in vitro synthesis and initial structural insight of ice nucleating protein InaZ

Novikova, I. V.; China, S.; Evans, J. E.

10.1101/334987 — synthetic biology — Posted on 2018-11-13

1581 Topological data analysis quantifies biological nano-structure from single molecule localization microscopy

Pike, J. A.; Khan, A. O.; Pallini, C.; Thomas, S. G.; Mund, M.; Ries, J.; Poulter, N. S.; Styles, I. B.

10.1101/400275 — bioinformatics — Posted on 2018-11-13

1582 Dynamic threat processing

Meyer, C. T.; Padmala, S.; Pessoa, L.

10.1101/183798 — neuroscience — Posted on 2018-11-13

1583 Co-option and Detoxification of a Phage Lysin for Housekeeping Function

Randich, A. M.; Kysela, D. T.; Morlot, C.; Brun, Y. V.

10.1101/418723 — microbiology — Posted on 2018-11-13

1584 Decoupling the variances of heterosis and inbreeding effects is evidenced in yeast’s life-history and proteomic traits

Petrizzelli, M.; de Vienne, D.; Dillmann, C.

10.1101/362418 — systems biology — Posted on 2018-11-13

1585 Heparin-induced tau filaments are polymorphic and differ from those in Alzheimer’s and Pick’s diseases

Zhang, W.; Falcon, B.; Murzin, A. G.; Fan, J.; Crowther, R. A.; Goedert, M.; Scheres, S. H. W.

10.1101/468892 — biophysics — Posted on 2018-11-13

1586 Lamina and Heterochromatin Direct Chromosome Organisation in Senescence and Progeria

Chiang, M.; Michieletto, D.; Brackley, C. A.; Rattanavirotkul, N.; Mohammed, H.; Marenduzzo, D.; Chandra, T.

10.1101/468561 — biophysics — Posted on 2018-11-13

1587 A Primase-Induced Conformational Switch Controls the Stability of the Bacterial Replisome

Monachino, E.; Jergic, S.; Lewis, J. S.; Xu, Z.-Q.; Lo, A. T. Y.; O Shea, V. L.; Berger, J. M.; Dixon, N. E.; van Oijen, A. M.

10.1101/469312 — biochemistry — Posted on 2018-11-13

1588 PlotsOfData - a web app for visualizing data together with its summaries

Postma, M.; Goedhart, J.

10.1101/426767 — scientific communication and education — Posted on 2018-11-13

1589 Genomic data reveal similar genetic differentiation between species with vastly different dispersal capabilities and life histories

Jordan, S.; Hand, B. K.; Hotaling, S.; DelVecchia, A.; Malison, R.; Nissley, C.; Stanford, J.; Luikart, G.

10.1101/044073 — genomics — Posted on 2018-11-13

1590 Habitat fragmentation compromises the population dynamic of the globally near-threatened Straight-billed Reedhaunter (Limnoctites rectirostris)

Goncalves, M. S.; Pons, P.; Bonow, F.; Galvao Bastazini, V. A.; Gil-Delgado, J.; Lopez Iborra, G.

10.1101/468488 — ecology — Posted on 2018-11-13

1591 From spatio-temporal morphogenetic gradients to rhythmic patterning at the shoot apex

Galvan-Ampudia, C. S.; Cerutti, G.; Legrand, J.; Azais, R.; Brunoud, G.; Moussu, S.; Wenzl, C.; Lohmann, J.; Godin, C.; Vernoux, T.

10.1101/469718 — plant biology — Posted on 2018-11-13

1592 WUSCHEL acts as a rheostat on the auxin pathway to maintain apical stem cells in Arabidopsis

Ma, Y.; Miotk, A.; Sutikovic, Z.; Medzihradszky, A.; Wenzl, C.; Ermakova, O.; Gaillochet, C.; Forner, J.; Utan, G.; Brackmann, K.; Galvan-Ampudia, C. S.; Vernoux, T.; Greb, T.; Lohmann, J. U.

10.1101/468421 — plant biology — Posted on 2018-11-13

1593 Impact of a Patient-Derived Hepatitis C Viral RNA Genome with a Mutated MicroRNA Binding Site

Mata, M.; Neben, S.; Majzoub, K.; Carette, J.; Sarnow, P.

10.1101/469841 — microbiology — Posted on 2018-11-13

1594 Biliary microbiota and bile acids composition in cholelithiasis

Petrov, V. A.; Fernandez-Peralbo, M. A.; Derks, R.; Knyazeva, E. M.; Merzlikin, N. V.; Sazonov, A. E.; Mayboroda, O. A.; Saltykova, I. V.

10.1101/469825 — microbiology — Posted on 2018-11-13

1595 Genetic Diversity and Coexistence of Babesia in Ticks (Acari: Ixodidae) from Northeastern

Jiang, J.-F.; Jiang, B.-G.; Yuan, T.-T.; Fricken, M. E. V.; Jia, N.; Jiang, R.-R.; Zhang, Y.; Li, X.-L.; Zheng, Y.-C.; Huo, Q.-B.; Sun, Y.; Cao, W.-C.

10.1101/469833 — epidemiology — Posted on 2018-11-13

1596 Single particle cryo-EM reconstruction of 52 kDa streptavidin at 3.2 Angstrom resolution

Fan, X.; Wang, J.; Zhang, X.; Yang, Z.; Zhang, J.-C.; Zhao, L.; Peng, H.-L.; Lei, J.; Wang, H.-W.

10.1101/457861 — biophysics — Posted on 2018-11-13

1597 The strength of protein-protein interactions controls the information capacity and dynamical response of signaling networks

Wang, C.-H.; Bashor, C. J.; Mehta, P.

10.1101/469197 — systems biology — Posted on 2018-11-13

1598 Global transcriptional regulation of innate immunity in C. elegans

Fletcher, M.; Tillman, E. J.; Butty, V. L.; Levine, S. S.; Kim, D. H.

10.1101/469817 — immunology — Posted on 2018-11-13

1599 Dynamic transcriptome profiles within spermatogonial and spermatocyte populations during postnatal testis maturation revealed by single-cell sequencing

Grive, K. J.; Hu, Y.; Shu, E.; Grimson, A.; Elemento, O.; Grenier, J. K.; Cohen, P. E.

10.1101/464149 — genomics — Posted on 2018-11-13

1600 Ensembles from ordered and disordered proteins reveal similar structural constraints during evolution

Marchetti, J.; Monzon, A.; Tosatto, S. C. E.; Parisi, G.; Fornasari, M. S.

10.1101/468801 — bioinformatics — Posted on 2018-11-13

1601 RIM-BP2 primes synaptic vesicles via recruitment of Munc13-1 at hippocampal mossy fiber synapses

Brockmann, M. M.; Maglione, M.; Willmes, C. G.; Stumpf, A.; Bouazza, B. A.; Velasquez, L. M.; Grauel, M. K.; Beed, P.; Sigrist, S. J.; Rosenmund, C.; Schmitz, D.

10.1101/469494 — neuroscience — Posted on 2018-11-13

1602 OLGA: fast computation of generation probabilities of B- and T-cell receptor amino acid sequences and motifs

Sethna, Z.; Elhanati, Y.; Callan, C. G.; Walczak, A. M.; Mora, T.

10.1101/367904 — bioinformatics — Posted on 2018-11-13

1603 How a well-adapting immune system remembers

Mayer, A.; Balasubramanian, V.; Walczak, A. M.; Mora, T.

10.1101/347856 — immunology — Posted on 2018-11-13

1604 A frequent variant in the Japanese population determines quasi-Mendelian inheritance of rare retinal ciliopathy

Nikopoulos, K.; Cisarova, K.; Quinodoz, M.; Koskiniemi-Kuendig, H.; Miyake, N.; Farinelli, P.; Rehman, A. U.; Imran Khan, M.; Prunotto, A.; Akiyama, M.; Kamatani, Y.; Terao, C.; Miya, F.; Ikeda, Y.; Ueno, S.; Fuse, N.; Murakami, A.; Wada, Y.; Terasaki, H.; Sonoda, K.-H.; Ishibashi, T.; Kubo, M.; Cremers, F. P. M.; Kutalik, Z.; Matsumoto, N.; Nishiguchi, K. M.; Nakazawa, T.; Rivolta, C.

10.1101/257634 — genomics — Posted on 2018-11-13

1605 Simultaneous multiplexed amplicon sequencing and transcriptome profiling in single cells

Saikia, M.; Burnham, P.; Keshavjee, S. H.; Wang, M. F. Z.; Heyang, M.; Moral-Lopez, P.; Hinchman, M. M.; Danko, C. G.; Parker, J. S. L.; De Vlaminck, I.

10.1101/328328 — genomics — Posted on 2018-11-13

1606 \"I hear with my little ear something...\": Enhanced performance of absolute pitch musicians in an interleaved melody recognition test

Wenhart, T.; Hwang, Y.-Y.; Altenmueller, E.

10.1101/469429 — neuroscience — Posted on 2018-11-13

1607 Multi-omics profiling establishes the polypharmacology of FDA Approved CDK4/6 inhibitors and its impact on drug response

Hafner, M.; Mills, C. E.; Subramanian, K.; Chen, C.; Chung, M.; Boswell, S. A.; Everley, R. A.; Walmsley, C. S.; Juric, D.; Sorger, P.

10.1101/211680 — cancer biology — Posted on 2018-11-13

1608 Information synergy: adding unambiguous quality information rescues social information use in ants

Czaczkes, T. J.; Beckwith, J. J.; Horsch, A.-L.

10.1101/219980 — animal behavior and cognition — Posted on 2018-11-13

1609 Evaluation of the 3D fractal dimension as a marker of structural brain complexity in multiple-acquisition MRI

Krohn, S.; Froeling, M.; Leemans, A.; Ostwald, D.; Villoslada, P.; Finke, C.; Esteban, F. J.

10.1101/124206 — neuroscience — Posted on 2018-11-13

1610 Differential Signaling Mediated by ApoE2, ApoE3, and ApoE4 in Human Neurons Parallels Alzheimer’s Disease Risk

Huang, Y.-W. A.; Zhou, B.; Nabet, A. M.; Wernig, M.; Südhof, T.

10.1101/460899 — neuroscience — Posted on 2018-11-13

1611 Neural correlates of learning pure tones versus natural sounds in the auditory cortex

Maor, I.; Shwartz-Ziv, R.; Feigin, L.; Elyada, Y.; Sompolinsky, H.; Mizrahi, A.

10.1101/273342 — neuroscience — Posted on 2018-11-12

1612 Dissecting heterogeneous cell-populations across signaling and disease conditions with PopAlign

Chen, S.; Park, J. H.; Rivaud, P.; Charles, E.; Haliburton, J.; Pichiorri, F.; Thomson, M.

10.1101/421354 — bioinformatics — Posted on 2018-11-12

1613 Target-specific co-transmission of acetylcholine and GABA from a subset of cortical VIP+ interneurons

Granger, A. J.; Wang, W.; Robertson, K.; El-Rifai, M.; Zanello, A.; Bistrong, K.; Saunders, A.; Chow, B.; Nunez, V.; Gu, C.; Sabatini, B. L.

10.1101/469064 — neuroscience — Posted on 2018-11-12

1614 Modeling Entropic and Energetic Effects of Linker Length and Rigidity within Synthetic HIV-1 Antibodies designed to Bind Bivalently to Env Spikes

Einav, T.; Gnanapragasam, P. N. P.; Yazdi, S.; Phillips, R.; Bjorkman, P. J.

10.1101/406454 — immunology — Posted on 2018-11-12

1615 Behavioral evolution drives hindbrain diversification among Lake Malawi cichlid fish

York, R.; Byrne, A.; Abdilleh, K.; Patil, C.; Streelman, J. T.; Finger, T.; Fernald, R.

10.1101/467282 — evolutionary biology — Posted on 2018-11-12

1616 Developing and Evaluating Mappings of ICD-10 and ICD-10-CM codes to Phecodes

Wu, P.; Gifford, A.; Meng, X.; Li, X.; Campbell, H.; Varley, T.; Zhao, J.; Bastarache, L.; Denny, J. C.; Theodoratou, E.; Wei, W.-Q.

10.1101/462077 — bioinformatics — Posted on 2018-11-12

1617 The NDV-3A vaccine protects mice from multidrug resistant Candida auris infection

Singh, S.; Uppuluri, P.; Alqarihi, A.; Elhassan, H.; French, S.; Lockhart, S. R.; CHiller, T.; Edwards, J. E.; Ibrahim, A. S.

10.1101/465096 — microbiology — Posted on 2018-11-12

1618 Interactome comparison of human embryonic stem cell lines with the inner cell mass and trophectoderm

Stevens, A.; Smith, H.; Garner, T.; Minogue, B.; Sneddon, S.; Shaw, L.; Oldershaw, R.; Bates, N.; Brison, D.; Kimber, S.

10.1101/411439 — developmental biology — Posted on 2018-11-12

1619 Triple layered QSAR Studies on Substituted 1,2,4-Trioxanes as potential antimalarial agents: Superiority of the Quantitative Pharmacophore-Based Alignment, Over Common Substructure based Alignment

Gupta, A. K.; Saxena, A. K.

10.1101/468959 — bioinformatics — Posted on 2018-11-12

1620 Protein nitration is a physiological regulator of cardiac lactate dehydrogenase active site loop mobility and activity

10.1101/348789 — biochemistry — Posted on 2018-11-12

1621 A Bayesian framework for the analysis of systems biology models of the brain

Russell-Buckland, J.; Barnes, C. P.; Tachtsidis, I.

10.1101/468793 — systems biology — Posted on 2018-11-12

1622 Psychiatric risk gene NT5C2 regulates protein translation in human neural progenitor cells

Duarte, R. R. R.; Bachtel, N. D.; Cotel, M.-C.; Lee, S. H.; Selvackadunco, S.; Watson, I. A.; Hovsepian, G. A.; Troakes, C.; Breen, G. D.; Nixon, D. F.; Murray, R. M.; Bray, N. J.; Eleftherianos, I.; Vernon, A. C.; Powell, T. R.; Srivastava, D. P.

10.1101/468546 — neuroscience — Posted on 2018-11-12

1623 Exome sequencing identifies high impact trait-associated alleles enriched in Finns

Locke, A. E.; Meltz Steinberg, K.; Chiang, C. W.; Service, S.; Havulinna, A.; Stell, L.; Pirinen, M.; Abel, H. J.; Chiang, C.; Fulton, R. S.; Jackson, A. U.; Kang, C. J.; Kanchi, K.; Koboldt, D. C.; Larson, D.; Nelson, J.; Nicholas, T. J.; Pietila, A.; Ramensky, V.; Ray, D.; Scott, L. J.; Stringham, H. M.; Vangipurapu, J.; Welch, R.; Yajnik, P.; Yin, X.; Eriksson, J.; Ala-Korpela, M.; Jarvelin, M.-R.; Manniko, M.; Laivouri, H.; Dutcher, S. K.; Stitziel, N. O.; Wilson, R. K.; Hall, I. M.; Sabatti, C.; Palotie, A.; Salomaa, V.; Laakso, M.; Ripatti, S.; Boehnke, M.; Freimer, N. B.

10.1101/464255 — genomics — Posted on 2018-11-12

1624 Divergent selection causes whole genome differentiation without physical linkage among the targets in Spodoptera frugiperda (Noctuidae)

NAM, K.; Nhim, S.; Robin, S.; Bretaudeau, A.; Negre, N.; dAlencon, E.

10.1101/452870 — evolutionary biology — Posted on 2018-11-12

1625 Ultra-high field MRI reveals mood-related circuit disturbances in depression: A comparison between 3-Tesla and 7-Tesla

Morris, L. S.; Kundu, P.; Costi, S.; Collins, A.; Schneider, M.; Verma, G.; Balchandani, P.; Murrough, J. W.

10.1101/459479 — neuroscience — Posted on 2018-11-12

1626 Activation of rod input in a in a model of retinal degeneration reverses retinal remodeling and induces formation of normal synapses, circuitry and visual signaling in the adult retina

Wang, T.; Pahlberg, J.; Cafaro, J.; Sampath, A. P.; Field, G. D.; Chen, J.

10.1101/469221 — neuroscience — Posted on 2018-11-12

1627 Habitat fragmentation compromises the population dynamic of the globally near-threatened Straight-billed Reedhaunter (Limnoctites rectirostris)

Goncalves, M. S.; Pons, P.; Bonow, F.; Galvao Bastazini, V. A.; Gil-Delgado, J.; Lopez Iborra, G.

10.1101/468488 — ecology — Posted on 2018-11-12

1628 TriPepSVM - de novo prediction of RNA-binding proteins based on short amino acid motifs

Bressin, A.; Schulte-Sasse, R.; Figini, D.; Urdaneta, E. C.; Beckmann, B. M.; Marsico, A.

10.1101/466151 — bioinformatics — Posted on 2018-11-12

1629 Long-read viral metagenomics enables capture of abundant and microdiverse viral populations and their niche-defining genomic islands

Warwick-Dugdale, J.; Solonenko, N.; Moore, K.; Chittick, L.; Gregory, A. C.; Allen, M. J.; Sullivan, M. B.; Temperton, B.

10.1101/345041 — genomics — Posted on 2018-11-12

1630 Nested phylogenetic conflicts, combinability, and deep phylogenomics in plants

Smith, S. A.; Walker, J. F.; Brown, J.; Walker-Hale, N.

10.1101/371930 — evolutionary biology — Posted on 2018-11-12

1631 Why cooperation is not running away

Geoffroy, F.; Baumard, N.; Andre, J.-B.

10.1101/316117 — evolutionary biology — Posted on 2018-11-12

1632 Transcriptionally induced enhancers in the macrophage immune response to Mycobacterium tuberculosis infection

Denisenko, E.; Guler, R.; Mhlanga, M. M.; Suzuki, H.; Brombacher, F.; Schmeier, S.

10.1101/303552 — bioinformatics — Posted on 2018-11-12

1633 Oxidative pathways of deoxyribose and deoxyribonate catabolism

Price, M. N.; Ray, J.; Iavarone, A. T.; Carlson, H. K.; Ryan, E. M.; Malmstrom, R. R.; Arkin, A. P.; Deutschbauer, A. M.

10.1101/205583 — microbiology — Posted on 2018-11-12

1634 Comparative architectures of direct and social genetic effects from the genome-wide association study of 170 phenotypes in outbred laboratory mice

Baud, A.; Casale, F. P.; Nicod, J.; Stegle, O.

10.1101/302349 — genetics — Posted on 2018-11-12

1635 Identifying the diagnostic value of microRNA-421 in gastric cancer patients: a meta-analysis

Miao, Y.; Zhang, Y.; Wang, L.; Yin, L.

10.1101/468983 — epidemiology — Posted on 2018-11-12

1636 MetaGxData: Clinically Annotated Breast, Ovarian and Pancreatic Cancer Datasets and their Use in Generating a Multi-Cancer Gene Signature

Gendoo, D. M. A.; Zon, M.; Sandhu, V.; Manem, V.; Ratanasirigulchai, N.; Chen, G. M.; Waldron, L.; Haibe-Kains, B.

10.1101/052910 — bioinformatics — Posted on 2018-11-12

1637 Oncogenic G12D mutation alters local conformations and dynamics of K-Ras

Vatansever, S.; Erman, B.; Gumus, Z.

10.1101/178483 — biophysics — Posted on 2018-11-12

1638 Triple layered QSAR Studies on Substituted 1,2,4-Trioxanes as potential antimalarial agents: Superiority of the Quantitative Pharmacophore-Based Alignment, Over Common Substructure based Alignment

Gupta, A. K.; Saxena, A. K.

10.1101/468959 — bioinformatics — Posted on 2018-11-12

1639 The role of glycaemic, lipid, blood pressure and obesity risk factors as mediators of the effect of height on Coronary Artery Disease and Type 2 Diabetes Mellitus: A Mendelian Randomisation Study.

Marouli, E.; Del Greco M, F.; Astley, C.; Yang, J.; Ahmad, S.; Berndt, S.; Caulfield, M.; Evangelou, E.; McKnight, B.; Medina-Gomez, C.; van Vliet Ostaptchouk, J.; Warren, H.; Zhu, Z.; GIANT consortium, ; Hirschhorn, J.; Loos, R.; Kutalik, Z.; Deloukas, P.

10.1101/468918 — genetics — Posted on 2018-11-12

1640 Bipolar multiplex families have an increased burden of common risk variants for psychiatric disorders

Andlauer, T. F. M.; Guzman-Parra, J.; Streit, F.; Strohmaier, J.; Gonzalez, M. J.; Gil Flores, S.; Cabaleiro Fabeiro, F. J.; del Rio Noriega, F.; Perez Perez, F.; Haro Gonzalez, J.; Orozco Diaz, G.; Auburger, G.; Degenhardt, F.; Heilmann-Heimbach, S.; Herms, S.; Hoffmann, P.; Frank, J.; Foo, J. C.; Treutlein, J.; Witt, S. H.; Cichon, S.; Kogevinas, M.; Bipolar Disorder Working Group of the Psychiatric Genomics Consortium, ; Major Depressive Disorder Working Group of the Psychiatric Genomics Consortium, ; Rivas, F.; Mayoral, F.; Mueller-Myhsok, B.; Forstner, A. J.; Noethen, M.; Rietschel, M.

10.1101/468975 — genetics — Posted on 2018-11-12

1641 Memory in trait macroevolution

Goldberg, E. E.; Foo, J.

10.1101/465971 — evolutionary biology — Posted on 2018-11-12

1642 Polycomb Cbx2 Condensates Assemble through Phase Separation

Tatavosian, R.; Kent, S.; Brown, K.; Yao, T.; Duc, H. N.; Huynh, T. N.; Zhen, C. Y.; Ma, B.; Wang, H.; Ren, X.

10.1101/468926 — biochemistry — Posted on 2018-11-12

1643 Developing Future Biologists: creating and assessing a portable short course to engage underrepresented undergraduate students in developmental biology

Pinskey, J. M.; Dulka, E. A.; Ramos, A. I.; Echevarria-Andino, M. L.; Lorberbaum, D. S.; Carpenter, B. S.; Martinez-Marquez, J. Y.; Budaitis, B. G.; Holloway, E. M.; Raj, S.; Chin, A. M.; Suarez, E.; Buttitta, L. A.; Gumucio, D. L.; Wellik, D. M.; Insolera, R.; Marty-Santos, L.; Allen, B. L.; Barolo, S.

10.1101/467092 — scientific communication and education — Posted on 2018-11-12

1644 Reevaluation of the Role of ERK3 in Perinatal Survival and Post-Natal Growth Using New Genetically-Engineered Mouse Models

Soulez, M.; Saba-El-Leil, M. K.; Turgeon, B.; Mathien, S.; Coulombe, P.; Klinger, S.; Rousseau, J.; Levesque, K.; Meloche, S.

10.1101/467605 — developmental biology — Posted on 2018-11-12

1645 The Bayesian Superorganism I: collective probability estimation

Hunt, E. R.; Franks, N. R.; Baddeley, R. J.

10.1101/468942 — animal behavior and cognition — Posted on 2018-11-12

1646 Non-monotonic regulation of gene expression, neural progenitor fate and brain growth by the chromatin remodeller CHD8

Hurley, S.; Mohan, C.; Suetterlin, P.; Ellegood, J.; Rudari, F.; Lerch, J. P.; Fernandes, C.; Basson, M. A.

10.1101/469031 — neuroscience — Posted on 2018-11-12

1647 Sources of path integration error in young and aging humans

Stangl, M.; Kanitscheider, I.; Riemer, M.; Fiete, I.; Wolbers, T.

10.1101/466870 — neuroscience — Posted on 2018-11-12

1648 Methylglyoxal modification of TrkB promotes synaptic plasticity and enhances resilience to chronic stress

Wu, Z.; Fu, Y.; Yang, Y.; Huang, C.; Zheng, C.; Guo, Z.; Yang, Z.; Chen, X.; Zhu, J.; Wang, J.; Li, X.; Chen, L.; Zhou, W.; Chen, Y.; Wang, J.; Yang, Y.; Jiang, M.; Chen, S.; Lv, A.; Liu, J.; Li, Y.; Sun, S.; Wang, Z.; Xiao, W.; Wang, Y.

10.1101/435867 — neuroscience — Posted on 2018-11-12

1649 Skin inflammation driven by differentiation of quiescent tissue-resident ILCs into a spectrum of pathogenic effectors

Bielecki, P.; Riesenfeld, S. J.; Kowalczyk, M. S.; Amezcua Vesely, M. C.; Kroehling, L.; Yaghoubi, P.; Dionne, D.; Jarret, A.; Steach, H. R.; McGee, H. M.; Porter, C. B. M.; Licona-Limon, P.; Bailis, W.; Jackson, R.; Gagliani, N.; Locksley, R. M.; Regev, A.; Flavell, R. A.

10.1101/461228 — immunology — Posted on 2018-11-12

1650 Epigenetic signatures associated with imprinted paternally-expressed genes in the Arabidopsis endosperm

Kohler, C.; Moreno-Romero, J.; De Leon, G. D. T.; Yadav, V. K.; Santos-Gonzalez, J.

10.1101/423137 — genetics — Posted on 2018-11-12

1651 Peripheral blood DNA methylation differences in twin pairs discordant for Alzheimer’s disease

Konki, M.; Malonzo, M.; Karlsson, I.; Lindgren, N.; Ghimire, B.; Smolander, J.; Scheinin, N.; Ollikainen, M.; Laiho, A.; Elo, L. L.; Lönnberg, T.; Röyttä, M.; Pedersen, N.; Kaprio, J.; Lähdesmäki, H.; Rinne, J.; Lund, R. J.

10.1101/468470 — genomics — Posted on 2018-11-12

1652 Evaluation of colorectal cancer subtypes and cell lines using deep learning

Ronen, J.; Hayat, S.; Akalin, A.

10.1101/464743 — bioinformatics — Posted on 2018-11-12

1653 Comparative genomic analysis of the emerging pathogen Streptococcus pseudopneumoniae: novel insights into virulence determinants and identification of a novel species-specific molecular marker

Garriss, G.; Nannapaneni, P.; Simoes, A. S.; Brovall, S.; Sa-Leao, R.; Goossens, H.; de Lencastre, H.; Henriques-Normark, B.

10.1101/468462 — microbiology — Posted on 2018-11-12

1654 Sketching Algorithms for Genomic Data Analysis and Querying in a Secure Enclave

Kockan, C.; Zhu, K.; Dokmai, N.; Karpov, N.; Kulekci, O.; Woodruff, D.; Sahinalp, C.

10.1101/468355 — bioinformatics — Posted on 2018-11-12

1655 Healthy ageing reduces the precision of episodic memory retrieval

Korkki, S.; Richter, F.; Jeyarathnarajah, P.; Simons, J.

10.1101/468579 — neuroscience — Posted on 2018-11-12

1656 Contextual interference effect is independent of retroactive inhibition but variable practice is not always beneficial

Thuerer, B.; Gedemer, S.; Focke, A.; Stein, T.

10.1101/466896 — neuroscience — Posted on 2018-11-12

1657 WUSCHEL acts as a rheostat on the auxin pathway to maintain apical stem cells in Arabidopsis

Ma, Y.; Miotk, A.; Sutikovic, Z.; Medzihradszky, A.; Enzl, C.; Ermakova, O.; Gaillochet, C.; Forner, J.; Utan, G.; Brackmann, K.; Galvan-Ampudia, C.; Vernoux, T.; Thomas, G.; Lohmann, J. U.

10.1101/468421 — plant biology — Posted on 2018-11-12

1658 Digital ischemia: Etiologies and long-term follow up. A cohort study of 323 patients

RAIMBEAU, A.; Pistorius, M.-A.; Goueffic, Y.; Connault, J.; Plissonneau-Duquene, P.; Maurel, B.; Reignier, J.; Asehnoune, K.; Artifoni, M.; Didier, Q.; Gautier, G.; Trochu, J.-N.; Rozec, B.; NGohou, C.; Durant, C.; Pottier, P.; Planchon, B.; Agard, C.; Espitia, O.

10.1101/468736 — pathology — Posted on 2018-11-12

1659 Physical linkage and mate preference generate linkage disequilibrium for behavioral isolation in two parapatric crickets

Blankers, T.; Berdan, E. L.; Hennig, M.; Mayer, F.

10.1101/468538 — evolutionary biology — Posted on 2018-11-12

1660 Filament formation by the translation factor eIF2B regulates protein synthesis in starved cells

Nueske, E.; Marini, G.; Richter, D.; Leng, W.; Bogdanova, A.; Franzmann, T. M.; Pigino, G.; Alberti, S.

10.1101/467829 — cell biology — Posted on 2018-11-12

1661 Proteogenomic annotation of the Chinese hamster reveals extensive novel translation events and endogenous retroviral elements

Li, S.; Cha, S. W.; Heffner, K.; Hizal, D. B.; Bowen, M.; Chaerkady, R.; Cole, R.; Tejwani, V.; Kaushik, P.; Henry, M.; Meleady, P.; Sharfstein, S.; Betenbaugh, M.; Bafna, V.; Lewis, N.

10.1101/468181 — bioinformatics — Posted on 2018-11-12

1662 Psychiatric risk gene NT5C2 regulates protein translation in human neural progenitor cells

Duarte, R. R.; Bachtel, N. D.; Cotel, M.-C.; Lee, S. H.; Selvackadunco, S.; Watson, I. A.; Hovsepian, G. A.; Troakes, C.; Breen, G. D.; Nixon, D. F.; Murray, R. M.; Bray, N. J.; Eleftherianos, I.; Vernon, A. C.; Powell, T. R.; Srivastava, D. P.

10.1101/468546 — neuroscience — Posted on 2018-11-12

1663 Diagnostic outcomes of exome gene panel sequencing in patients with unusual syndromic cleft lip/palate phenotypes

Jabalameli, R.; Martinez, J.; Arias Uruena, L.; Temple, I. K.; Pengelly, R. J.; Ennis, S.; Collins, A.; Briceno, I.

10.1101/465179 — genomics — Posted on 2018-11-12

1664 Testing for Hardy-Weinberg Equilibrium in Structured Populations using NGS Data

Meisner, J.; Albrechtsen, A.

10.1101/468611 — genetics — Posted on 2018-11-12

1665 Predictability of intraspecific size variation in extant planktonic foraminifera

Rillo, M. C.; Miller, G.; Kucera, M.; Ezard, T.

10.1101/468165 — ecology — Posted on 2018-11-12

1666 Habitat fragmentation compromises on the population dynamic of the globally near-threatened Straight-billed Reedhaunter (Limnoctites rectirostris)

Goncalves, M. S.; Pons, P.; Bonow, F.; Galvao Bastazini, V. A.; Gil-Delgado, J.; Lopez Iborra, G.

10.1101/468488 — ecology — Posted on 2018-11-12

1667 Maintenance of spatial gene expression by Polycomb-mediated repression after formation of a vertebrate body plan

Rougot, J.; Chrispijn, N. D.; Aben, M.; Elurbe, D. M.; Andralojc, K. M.; Murphy, P. J.; Jansen, P. W.; Vermeulen, M.; Cairns, B. R.; Kamminga, L. M.

10.1101/468769 — developmental biology — Posted on 2018-11-12

1668 Computational metabolism modeling predicts risk of distant relapse-free survival in breast cancer patients

Trilla-Fuertes, L.; Gamez-Pozo, A.; Diaz-Almiron, M.; Prado-Vazquez, G.; Zapater-Moros, A.; Lopez-Vacas, R.; Nanni, P.; Zamora, P.; Espinosa, E.; Fresno Vara, J. A.

10.1101/468595 — cancer biology — Posted on 2018-11-12

1669 Dissociation of fear initiation and maintenance by breathing-driven prefrontal oscillations

Bagur, S.; Lefort, J. M.; Lacroix, M. M.; de Lavilleon, G.; Herry, C.; Billand, C.; Geoffroy, H.; Benchenane, K.

10.1101/468264 — neuroscience — Posted on 2018-11-12

1670 Long-term exposure to PFE-360 in the AAV-α-synuclein rat model: findings and implications

Andersen, M. A.; Sotty, F.; Jensen, P. H.; Badolo, L.; Jeggo, R.; Smith, G. P.; Christensen, K. V.

10.1101/465567 — neuroscience — Posted on 2018-11-12

1671 Direct binding of Cdt2 to PCNA is important for targeting the CRL4Cdt2 E3 ligase activity to Cdt1

Nishitani, H.; Hayashi, A.; Giakoumakis, N. N.; Heidebrecht, T.; Ishii, T.; Panagopoulos, A.; Caillat, C.; Takahara, M.; Hibbert, R. G.; Suenaga, N.; Stadnik-Spiewak, M.; Takahashi, T.; Shiomi, Y.; Taraviras, S.; von Castelmur, E.; Lygerou, Z.; Perrakis, A.

10.1101/468413 — molecular biology — Posted on 2018-11-12

1672 Rational reprogramming of cellular states by combinatorial perturbation

Duan, J.; Li, B.; Bhakta, M.; Xie, S.; Zhou, P.; Munshi, N.; Hon, G.

10.1101/468249 — genomics — Posted on 2018-11-12

1673 Unbiased genome-scale identification of cis-regulatory modules in the human genome by GRAMc

Guay, C. L.; Nam, J.

10.1101/468405 — genomics — Posted on 2018-11-12

1674 Biobank-wide association scan identifies risk factors for late-onset Alzheimer’s disease and endophenotypes

Yan, D.; Hu, B.; Darst, B. F.; Mukherjee, S.; Kunkle, B. W.; Deming, Y.; Dumitrescu, L.; Wang, Y.; Naj, A.; Kuzma, A.; Zhao, Y.; Kang, H.; Johnson, S. C.; Cruchaga, C.; Hohman, T. J.; Crane, P.; Engelman, C. D.; Alzheimer's Disease Genetics Consortium, ; Lu, Q.

10.1101/468306 — genetics — Posted on 2018-11-12

1675 A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context

Gallois, A.; Mefford, J.; Ko, A.; Vaysse, A.; Laakso, M.; Zaitlen, N.; Pajukanta, P.; Aschard, H.

10.1101/461848 — genetics — Posted on 2018-11-12

1676 Adaptive reorganization of the cytoplasm upon stress in budding yeast

Marini, G.; Nueske, E.; Leng, W.; Alberti, S.; Pigino, G.

10.1101/468454 — cell biology — Posted on 2018-11-12

1677 Sparse Binary Relation Representations for Genome Graph Annotation

Karasikov, M.; Mustafa, H.; Joudaki, A.; Javadzadeh No, S.; Rätsch, G.; Kahles, A.

10.1101/468512 — bioinformatics — Posted on 2018-11-12

1678 Commitments by the biopharmaceutical industry to clinical trials transparency: the evolving environment

Baronikova, S.; Purvis, J.; Southam, E.; Beeso, J.; Winchester, C.; Panayi, A.

10.1101/349902 — scientific communication and education — Posted on 2018-11-12

1679 A Novel Root-Knot Nematode Resistance QTL on Chromosome Vu01 in Cowpea

Ndeve, A. D.; Santos, J. R.; Matthews, W. C.; Huynh, B.-L.; Guo, Y.-N.; Lo, S.; Munoz-Amatriain, M.; Roberts, P. A.

10.1101/468215 — genetics — Posted on 2018-11-12

1680 Yield potential definition of the chilling requirement reveals likely underestimation of the risk of climate change on winter chill accumulation

Campoy, J. A.; Darbyshire, R.; Dirlewanger, E.; Quero-Garcia, J.; Wenden, B.

10.1101/285361 — plant biology — Posted on 2018-11-12

1681 Comparative genomics and phylogeny of sequenced IncHI plasmids

Alvarez, S.

10.1101/334409 — microbiology — Posted on 2018-11-12

1682 A Bayesian framework for the analysis of systems biology models of the brain

Russell-Buckland, J.; Barnes, C. P.; Tachtsidis, I.

10.1101/468793 — systems biology — Posted on 2018-11-12

1683 Joint Modeling of Reaction Times and Choice Improves Parameter Identifiability in Reinforcement Learning Models

Ballard, I. C.; McClure, S. M.

10.1101/306720 — neuroscience — Posted on 2018-11-12

1684 An integrative study on ribonucleoprotein condensates identifies scaffolding RNAs and reveals a new player in Fragile X-associated Tremor/Ataxia Syndrome

Cid-Samper, F.; Gelabert-Baldrich, I.; Lang, B.; Lorenzo-Gotor, N.; Delli Ponti, R.; WFM Severijnen, L.-A.; Bolognesi, B.; Gelpi, E.; Hukema-Felten, R. K.; Botta-Orfila, T.; Tartaglia, G. G.

10.1101/298943 — molecular biology — Posted on 2018-11-12

1685 Extraordinary Fast-Twitch Fiber Abundance Elite Weightlifters

Serrano, N.; Colenso-Semple, L. M.; Lazauskas, K. K.; Siu, J. W.; Bagley, J. R.; Lockie, R. G.; Costa, P. B.; Galpin, A. J.

10.1101/468744 — physiology — Posted on 2018-11-12

1686 Short-term fasting selectively influences impulsivity in healthy individuals

Howard, M.; Roiser, J.; Gilbert, S. J.; Burgess, P. W.; Dayan, P.; Serpell, L.

10.1101/468751 — neuroscience — Posted on 2018-11-12

1687 Identification of proteins involved in Trypanosoma brucei DNA replication fork dynamics using nascent DNA proteomics

Rocha-Granados, M.; Bermudez, Y.; Dodard, G.; Vandoros, A.; Gunzl, A.; Klingbeil, M.

10.1101/468660 — molecular biology — Posted on 2018-11-12

1688 SpitWorm, an herbivorous robot: Mechanical leaf wounding with simultaneous application of salivary components

Li, G.; Bartram, S.; Guo, H.; Mithöfer, A.; Kunert, M.; Boland, W.

10.1101/468702 — ecology — Posted on 2018-11-12

1689 Trust in scientists and rates of noncompliance with a fisheries rule in the Brazilian Pantanal

Gore, M. L.; Shirley, E.

10.1101/468728 — scientific communication and education — Posted on 2018-11-12

1690 Ischemic Preconditioning and Left Ventricular Dysfunction: A Novel Mechanism & Model for Pulseless Electrical Activity

Patil, K. D.; Tunin, R. S.; Fink, S. J.; Tao, S.; Halperin, H. R.

10.1101/468710 — physiology — Posted on 2018-11-12

1691 Hashimotos Thyroiditis-associated Thyroid Swelling among Adolescents Presenting with Benign Goiter in Lahore, Pakistan

Rizvi, S. N. B.; Shan, S.; Aslam, S.; Elahi, S.; Saleem, N.

10.1101/468777 — epidemiology — Posted on 2018-11-12

1692 Lateral ventricle volume trajectories predict response inhibition in older age - a longitudinal brain imaging and machine learning approach

Lundervold, A. J.; Vik, A.; Lundervold, A.

10.1101/468678 — neuroscience — Posted on 2018-11-12

1693 TAK-071, a muscarinic M1 receptor positive allosteric modulator, attenuates scopolamine-induced quantitative electroencephalogram power spectral changes in cynomolgus monkeys

Kurimoto, E.; Nakashima, M.; Kimura, H.; Suzuki, M.

10.1101/468686 — neuroscience — Posted on 2018-11-12

1694 Body composition and growth in full-term small for gestational age and large for gestational age Swedish infants assessed with air displacement plethysmography at birth and at 3-4 months of age.

Olhager, E.; Larsson, A.; Ottosson, P.; Törnqvist, C.

10.1101/468785 — developmental biology — Posted on 2018-11-12

1695 Polymerization Kinetics Stability, Volumetric Changes, Apatite Precipitation, Strontium Release and Fatigue of Novel Bone Composites for Vertebroplasty

Panpisut, P.; Main, K.; Khan, M. A.; Arshad, M.; Xia, W.; Petridis, H.; Young, A. M.

10.1101/468652 — bioengineering — Posted on 2018-11-12

1696 Measuring hospital spatial wingspan by using a discrete choice model with utility-threshold

Saley, I.

10.1101/468645 — scientific communication and education — Posted on 2018-11-12

1697 Amino Acids Changes and Muscle Damage During the 400 km Ultra Trail Gobi Race

Li, M.; Wu, Y.; Huang, G.; Chen, S.; Li, S.; Cao, J.; Ma, X.; Du, Y.

10.1101/466706 — physiology — Posted on 2018-11-12

1698 Associations between impulsivity, risk behavior and HIV, HBV, HCV and syphilis seroprevalence among female prisoners in Indonesia: A cross-sectional study

Arends, R. M.; Nelwan, E. J.; Soediro, R.; van Crevel, R.; Alisjahbana, B.; Pohan, H. T.; von Borries, A. K. L.; Schene, A. H.; van der Ven, A. J.; Schellekens, A. F. A.

10.1101/468694 — epidemiology — Posted on 2018-11-12

1699 A diversity of transcriptional responses to reduced dopamine in SNc and VTA in a mouse Tyrosine hydroxylase KO model of Parkinson’s Disease

Koltun, M.; Cichewicz, K.; Gibbs, J. T.; Darvas, M.; Hirsh, J.

10.1101/468330 — neuroscience — Posted on 2018-11-11

1700 Simultaneous mesoscopic and two-photon imaging of neuronal activity in cortical circuits

Barson, D.; Hamodi, A. S.; Shen, X.; Lur, G.; Constable, R. T.; Cardin, J.; Crair, M.; Higley, M.

10.1101/468348 — neuroscience — Posted on 2018-11-11

1701 Transcription-factor centric genome mining strategy for discovery of diverse unprecedented RiPP gene clusters

Zhu, S.; Zheng, G.

10.1101/467670 — genomics — Posted on 2018-11-11

1702 Distance-based Protein Folding Powered by Deep Learning

Xu, J.

10.1101/465955 — bioinformatics — Posted on 2018-11-11

1703 Occurrence and predictive utility of isochronal, equiproportional, and other types of development among arthropods

Quinn, B.

10.1101/379164 — developmental biology — Posted on 2018-11-11

1704 Subspecies and sexual craniofacial size and shape variations in Japanese macaques (Macaca fuscata)

Yano, W.; Egi, N.; Takano, T.; Ogihara, N.

10.1101/467456 — zoology — Posted on 2018-11-11

1705 Transformation of event representations along middle temporal gyrus

Leshinskaya, A.; Thompson-Schill, S. L.

10.1101/468199 — neuroscience — Posted on 2018-11-11

1706 Bayesian estimation for stochastic gene expression using multifidelity models

Vo, H. D.; Fox, Z. R.; Baetica, A.; Munsky, B.

10.1101/468090 — systems biology — Posted on 2018-11-11

1707 ImmuneRegulation: A web-based tool for identifying human immune regulatory elements

Kalayci, S.; Esai Selvan, M.; Ramos, I.; Cotsapas, C.; Montgomery, R. R.; Poland, G.; Pulendran, B.; Tsang, J.; Klein, R. J.; Gumus, Z. H.

10.1101/468124 — immunology — Posted on 2018-11-11

1708 Composition of the Survival Motor Neuron (SMN) complex in Drosophila melanogaster

Matera, A. G.; Raimer, A. C.; Schmidt, C. A.; Kelly, J. A.; Droby, G. N.; Baillat, D.; ten Have, S.; Lamond, A. I.; Wagner, E. J.; Gray, K. M.

10.1101/468223 — genetics — Posted on 2018-11-11

1709 Matrix linear models for high-throughput chemical genetic screens

Liang, J. W.; Nichols, R. J.; Sen, S.

10.1101/468140 — bioinformatics — Posted on 2018-11-11

1710 Single-nuclei RNA-seq on human retinal tissue provides improved transcriptome profiling.

Liang, Q.; Dharmat, R.; Owen, L.; Shakoor, A.; Li, Y.; Kim, S.; Vitale, A.; Kim, I.; Morgan, D.; Wu, N.; DeAngelis, M.; Chen, R.

10.1101/468207 — genomics — Posted on 2018-11-11

1711 Sparse variable and covariance selection for high-dimensional seemingly unrelated Bayesian regression

Banterle, M.; Bottolo, L.; Richardson, S.; Ala-Korpela, M.; Jarvelin, M.-R.; Lewin, A.

10.1101/467019 — bioinformatics — Posted on 2018-11-11

1712 Increased Interactivity and Improvements to the GigaScience Database, GigaDB.

Xiao, S. Z.; Armit, C.; Edmunds, S.; Goodman, L.; Li, P.; Tuli, M. A.; Hunter, C.

10.1101/465666 — scientific communication and education — Posted on 2018-11-11

1713 The Effect of Oral Tactile Sensitivity on Texture Perception and Mastication Behavior in Humans

Shupe, G. E.; Wilson, A.; Luckett, C. R.

10.1101/466342 — physiology — Posted on 2018-11-11

1714 Variability in the Analgesic Response to Ibuprofen Following Third-Molar Extraction is Associated with Differences in Activation of the Cyclooxygenase Pathway

Theken, K. N.; Hersh, E. V.; Lahens, N. F.; Lee, H. M.; Granquist, E. J.; Giannakopoulos, H.; Levin, L. M.; Secreto-Dankanich, S. A.; Grant, G. R.; Detre, J. A.; FitzGerald, G. A.; Grosser, T.; Farrar, J. T.

10.1101/467407 — genomics — Posted on 2018-11-11

1715 Evolutionary Models of Amino Acid Substitutions Based on the Tertiary Structure of their Neighborhoods

Primetis, E.; Chavlis, S.; Pavlidis, P.

10.1101/468173 — evolutionary biology — Posted on 2018-11-11

1716 Embracing the dropouts in single-cell RNA-seq data

Qiu, P.

10.1101/468025 — bioinformatics — Posted on 2018-11-11

1717 Surface sediment samples from early age of seafloor exploration can provide a late 19th century baseline of the marine environment

Rillo, M. C.; Kucera, M.; Ezard, T. H. G.; Miller, G.

10.1101/419770 — paleontology — Posted on 2018-11-11

1718 Non-parametric physiological classification of retinal ganglion cells in the mouse retina

Jouty, J.; Hilgen, G.; Sernagor, E.; Hennig, M. H.

10.1101/407635 — neuroscience — Posted on 2018-11-11

1719 X Chromosome Dosage Modulates Multiple Molecular and Cellular Properties of Mouse Pluripotent Stem Cells Independently of Global DNA Methylation Levels

Song, J.; Janiszewski, A.; Geest, N. D.; Vanheer, L.; Talon, I.; Bakkali, M. E.; Oh, T.; Pasque, V.

10.1101/291450 — developmental biology — Posted on 2018-11-11

1720 Inter-generational Consequences for Growing C. elegans in Liquid

Lev, I.; Bril, R.; Liu, Y.; Cere, L. I.; Rechavi, O.

10.1101/467837 — genetics — Posted on 2018-11-11

1721 Impact of genetic variations on the human brain: when and where?

Vervier, K.; Brueggeman, L.; Michaelson, J.

10.1101/461814 — bioinformatics — Posted on 2018-11-11

1722 Exploration in the Presence of Mother in Typically and Non-Typically Developing Pre-Walking Human Infants

Frostig, T.; Alonim, H.; Scheingesicht, G.; Benjamini, Y.; Golani, I.

10.1101/350736 — neuroscience — Posted on 2018-11-11

1723 The Heterotaxy Gene, CCDC11, is Essential for Cytokinesis and Cell-Cell Adhesion Via RhoA Regulation

Kulkarni, S. S.; Stephenson, R. E.; Amalraj, S.; Betleja, E.; Moresco, J. J.; Yates, J. R.; Mahjoub, M. R.; Miller, A. L.; Khokha, M. K.

10.1101/452631 — cell biology — Posted on 2018-11-11

1724 Building a local community of practice in scientific programming for Life Scientists

Stevens, S. L. R.; Kuzak, M.; Martinez, C.; Moser, A.; Bleeker, P. M.; Galland, M.

10.1101/265421 — scientific communication and education — Posted on 2018-11-11

1725 A mutation-independent approach via transcriptional upregulation of a disease modifier gene rescues muscular dystrophy in vivo.

Kemaladewi, D.; Bassi, P. S.; Erwood, S.; Al-Basha, D.; Gawlik, K. I.; Lindsay, K.; Hyatt, E.; Kember, R.; Place, K. M.; Marks, R.; Durbeej, M.; Prescott, S. A.; Ivakine, E. A.; Cohn, R. D.

10.1101/286500 — genetics — Posted on 2018-11-11

1726 Analysis of sea star larval regeneration reveals conserved processes of whole-body regeneration across the metazoa

Cary, G.; Wolff, A.; Zueva, O.; Pattinato, J.; Hinman, V.

10.1101/118232 — developmental biology — Posted on 2018-11-11

1727 Evolutionary dynamics of carbapenem-resistant Acinetobacter baumannii circulating in Chilean hospitals

Opazo-Capurro, A.; San Martin, I.; Quezada-Aguiluz, M.; Morales, F.; Dominguez-Yevenes, M.; Lima, C.; Esposito, F.; Cerdeira, L. T.; Bello-Toledo, H. M.; Lincopan, N.; Gonzalez-Rocha, G. E.

10.1101/467589 — microbiology — Posted on 2018-11-11

1728 Penaeidins are a novel family of antiviral effectors against WSSV in shrimp

Xiao, B.; Fu, Q.; Niu, S.; Li, H.; Lu, K.; Wang, S.; Yin, B.; Weng, S.-P.; Li, C.; He, J.-G.

10.1101/467571 — immunology — Posted on 2018-11-11

1729 Untangling the Evolutionary History of European Bison (Bison bonasus)

van Loenen, A. L.; Hofman-Kaminska, E.; Mitchell, K. J.; Llamas, B.; Bocherens, H.; Soubrier, J.; Heiniger, H.; Pacher, M.; Makowiecki, D.; Piliciauskiene, G.; Drucker, D.; Kowalczyk, R.; Cooper, A.

10.1101/467951 — evolutionary biology — Posted on 2018-11-11

1730 Coordinated demethylation of H3K9 and H3K27 is required for rapid inflammatory responses of endothelial cells

HIGASHIJIMA, Y.; MATSUI, Y.; SHIMAMURA, T.; TSUTSUMI, S.; NAKAKI, R.; ABE, Y.; LINK, V. M.; OSAKA, M.; YOSHIDA, M.; WATANABE, R.; TANAKA, T.; TAGUCHI, A.; MIURA, M.; INOUE, T.; NANGAKU, M.; KIMURA, H.; FURUKAWA, T.; ABURATANI, H.; WADA, Y.; GLASS, C. K.; KANKI, Y.

10.1101/456491 — molecular biology — Posted on 2018-11-11

1731 Rapid, seamless generation of recombinant poxviruses using host-range and visual selection

Vipat, S.; Brennan, G.; Haller, S. L.; Rothenburg, S.

10.1101/467514 — microbiology — Posted on 2018-11-11

1732 Inter-generational Consequences for Growing C. elegans in Liquid

Lev, I.; Bril, R.; Liu, Y.; Cere, L. I.; Rechavi, O.

10.1101/467837 — genetics — Posted on 2018-11-11

1733 Population genetic structure of the bank vole Myodes glareolus within its glacial refugium in peninsular Italy

Chiocchio, A.; Colangelo, P.; Aloise, G.; Amori, G.; Bertolino, S.; Bisconti, R.; Castiglia, R.; Canestrelli, D.

10.1101/467753 — evolutionary biology — Posted on 2018-11-11

1734 A case study on the detailed reproducibility of a human cell atlas project

Hua, K.; Zhang, X.

10.1101/467993 — bioinformatics — Posted on 2018-11-11

1735 An Analysis of Characterized Plant Sesquiterpene Synthases

Durairaj, J.; Di Girolamo, A.; Bouwmeester, H. J.; de Ridder, D.; Beekwilder, J.; van Dijk, A. D. J.

10.1101/466839 — bioinformatics — Posted on 2018-11-11

1736 Discover Stable Expression Hot Spot in Genome of Chinese Hamster Ovary Cells Using Lentivirus based Random Integration Method

Zhou, S.; Ding, X.; Yang, L.; Chen, Y.; Gong, X.; Jin, J.; Li, H.

10.1101/467936 — bioengineering — Posted on 2018-11-11

1737 Towards feedback control of the cell-cycle across a population of yeast cells

Perrino, G.; Fiore, D.; Napolitano, S.; di Bernardo, M.; di Bernardo, D.

10.1101/467803 — synthetic biology — Posted on 2018-11-11

1738 High-resolution mapping of regulatory element interactions and genome architecture using ARC-C

Huang, N.; Seow, W. Q.; Ahringer, J.

10.1101/467506 — genomics — Posted on 2018-11-11

1739 Substructured population growth in the Ashkenazi Jews inferred with Approximate Bayesian Computation

Gladstein, A. L.; Hammer, M. F.

10.1101/467761 — genomics — Posted on 2018-11-11

1740 Patterns and mechanisms of diminishing returns from beneficial mutations

Wei, X.; Zhang, J.

10.1101/467944 — evolutionary biology — Posted on 2018-11-11

1741 Predicting trait regulators by identifying co-localization of DNA binding and GWAS variants in regulatory regions

Quon, G.; Feizi, S.; Marbach, D.; Claussnitzer, M.; Kellis, M.

10.1101/467852 — bioinformatics — Posted on 2018-11-11

1742 Lineage tracing on transcriptional landscapes links state to fate during differentiation

Weinreb, C.; Rodriguez-Fraticelli, A. E.; Camargo, F. D.; Klein, A. M.

10.1101/467886 — systems biology — Posted on 2018-11-11

1743 A simple method to co-purify genomic DNA, RNA, and proteins for functional studies

Jiang, J.; Ma, J.; Liu, B.; Wang, Y.

10.1101/467928 — plant biology — Posted on 2018-11-11

1744 Spatiotemporal expression of FRIGIDA modulate flowering time in Arabidopsis thaliana

Kong, X.; Zhao, J.; Luo, L.; Chen, Q.; Chang, G.; Huang, J.; Yang, Y.; Hu, X.

10.1101/467613 — plant biology — Posted on 2018-11-11

1745 FishResp: R Package and GUI Application for Analysis of Aquatic Respirometry Data

Morozov, S.; McCairns, R. J. S.; Merilä, J.

10.1101/467845 — physiology — Posted on 2018-11-11

1746 Boundary effects of expectation in human pain perception

Hird, E. J.; Charalambous, C.; El-Deredy, W.; Jones, A. K.; Talmi, D.

10.1101/467738 — neuroscience — Posted on 2018-11-11

1747 Gradients of connectivity distance in the cerebral cortex of the macaque monkey

Oligschläger, S.; Xu, T.; Baczkowski, B. M.; Falkiewicz, M.; Falchier, A.; Linn, G.; Margulies, D. S.

10.1101/467860 — neuroscience — Posted on 2018-11-11

1748 Negative mood induction effects on problem solving task in women with eating disorders: a multi-method examination

French, M. N.; Eneva, K.; Arlt, J. M.; Yiu, A.; Chen, E. Y.

10.1101/467712 — neuroscience — Posted on 2018-11-11

1749 Rapid task-dependent tuning of the mouse olfactory bulb

Koldaeva, A.; Schaefer, A. T.; Fukunaga, I.

10.1101/467530 — neuroscience — Posted on 2018-11-11

1750 The cyclic nitroxide antioxidant 4-methoxy-TEMPO decreases mycobacterial burden in vivo through host and bacterial targets

Black, H. D.; Xu, W.; Hortle, E.; Robertson, S. I.; Britton, W. J.; Kaur, A.; New, E. J.; Witting, P. K.; Chami, B.; Oehlers, S.

10.1101/464586 — microbiology — Posted on 2018-11-11

1751 Core components of endosomal mRNA transport are evolutionarily conserved in fungi

Mueller, J.; Pohlmann, T.; Feldbruegge, M.

10.1101/467787 — microbiology — Posted on 2018-11-11

1752 Skin inflammation driven by differentiation of quiescent tissue-resident ILCs into a spectrum of pathogenic effectors

Bielecki, P.; Riesenfled, S. J.; Kowalczyk, M. S.; Amezcua Vesely, M. C.; Kroehling, L.; Yaghoubi, P.; Dionne, D.; Jarret, A.; Steach, H. R.; McGee, H. M.; Porter, C. B. M.; Licona-Limon, P.; Bailis, W.; Jackson, R.; Gagliani, N.; Locksley, R. M.; Regev, A.; Flavell, R. A.

10.1101/461228 — immunology — Posted on 2018-11-11

1753 Refining interaction search through signed iterative Random Forests

Kumbier, K.; Basu, S.; Brown, J. B.; Celniker, S.; Yu, B.

10.1101/467498 — genomics — Posted on 2018-11-11

1754 First Draft Genome of a Brazilian Atlantic Rainforest Burseraceae reveals commercially-promising genes involved in terpenic oleoresins synthesis

Afonso, L. F.; Amaral, D.; Uliano-Silva, M.; Torres, A. L. Q.; Simas, D. R.; Rebelo, M. d. F.

10.1101/467720 — genomics — Posted on 2018-11-11

1755 Transcription-factor centric genome mining strategy for discovery of diverse unprecedented RiPP gene clusters

Zhu, S.; Zheng, G.

10.1101/467670 — genomics — Posted on 2018-11-11

1756 Determinants of QTL mapping power in the realized Collaborative Cross

Keele, G. R.; Crouse, W. L.; Kelada, S. N. P.; Valdar, W.

10.1101/459966 — genetics — Posted on 2018-11-11

1757 Cryo-EM structure of the receptor-activated TRPC5 ion channel at 2.9 angstrom resolution

Duan, J.; Li, J.; Chen, G.-L.; Zeng, B.; Clapham, D.; Li, Z.; Zhang, J.

10.1101/467969 — biophysics — Posted on 2018-11-11

1758 Potassium channel regulators are differentially expressed in hippocampi of Ts65Dn and Tc1 Down syndrome mouse models

Stern, S.; Keren, R.; Kim, Y.; Moses, E.

10.1101/467522 — neuroscience — Posted on 2018-11-11

1759 An atlas of polygenic risk score associations to highlight putative causal relationships across the human phenome

Richardson, T. G.; Harrison, S.; Hemani, G.; Davey Smith, G.

10.1101/467910 — genetics — Posted on 2018-11-11

1760 Phylogenomics, biogeography, and evolution in the American palm genus Brahea

Barrett, C.; Sinn, B.; King, L.; Medina, J.; Bacon, C.; Lahmeyer, S.; Hodel, D.

10.1101/467779 — evolutionary biology — Posted on 2018-11-11

1761 Simulation-based approaches to characterize metagenome coverage as a function of sequencing effort and microbial community structure

Royalty, T.; Steen, A. D.

10.1101/356840 — bioinformatics — Posted on 2018-11-10

1762 Tethered homing gene drives: a new design for spatially restricted population replacement and suppression

Dhole, S.; Loyd, A. L.; Gould, F.

10.1101/457564 — bioengineering — Posted on 2018-11-10

1763 Germline deletion reveals a non-essential role of the atypical MAPK6/ERK3

Ronkina, N.; Schuster-Gossler, K.; Hansmann, F.; Kunze-Schumacher, H.; Sandrock, I.; Yakovleva, T.; Lafera, J.; Baumgärtner, W.; Krueger, A.; Prinz, I.; Gossler, A.; Kotlyarov, A.; Gaestel, M.

10.1101/467597 — cell biology — Posted on 2018-11-10

1764 The Heterotaxy Gene, CCDC11, is Essential for Cytokinesis and Cell-Cell Adhesion Via RhoA Regulation

Kulkarni, S. S.; Stephenson, R. E.; Amalraj, S.; Betleja, E.; Moresco, J. J.; Yates, J. R.; Mahjoub, M. R.; Miller, A. L.; Khokha, M. K.

10.1101/452631 — cell biology — Posted on 2018-11-10

1765 Anti-NMDA receptor encephalitis in mice induced by active immunization with conformationally-stabilized holoreceptors

Jones, B. E.; Tovar, K. R.; Goehring, A.; Okada, N. J.; Gouaux, E.; Westbrook, G. L.

10.1101/467902 — neuroscience — Posted on 2018-11-10

1766 Ribosomal protein imbalance launches a C/EBP-based program to preserve tissue integrity

Baillon, L.

10.1101/467894 — cancer biology — Posted on 2018-11-10

1767 Chemically-induced Neurite-like Outgrowth Reveals Multicellular Network Function in Patient-derived Glioblastoma Cells

da Silva, B.; Polson, E. S.; Droop, A.; Mathew, R. K.; Stead, L. F.; Williams, J.; Short, S. C.; Scarcia, M.; Mavria, G.; Wurdak, H.

10.1101/467654 — cancer biology — Posted on 2018-11-10

1768 INSTRAL: Discordance-aware Phylogenetic Placement using Quartet Scores

Rabiee, M.; Mirarab, S.

10.1101/432906 — bioinformatics — Posted on 2018-11-10

1769 A Modified Hodgkin-Huxley model to Show the Effect of Motor Cortex Stimulation on the Trigeminal Neuralgia Network

Khodashenas, M.; Baghdadi, G.; Towhidkhah, F.

10.1101/467100 — neuroscience — Posted on 2018-11-10

1770 Community rescue in experimental phytoplankton communities facing severe herbicide pollution.

Fugere, V.; Hebert, M.-P.; Costa, N. B.; Xu, C. C. Y.; Barrett, R. D. H.; Beisner, B. E.; Bell, G.; Fussmann, G. F.; Shapiro, J.; Yargeau, V.; Gonzalez, A.

10.1101/467324 — ecology — Posted on 2018-11-10

1771 Time-delay model of perceptual decision making in cortical networks

Bielczyk, N.; Piskała, K.; Płomecka, M.; Radzinski, P.; Todorova, L.; Forys, U.

10.1101/348276 — neuroscience — Posted on 2018-11-10

1772 Genomic architecture and introgression shape a butterfly radiation

Edelman, N. B.; Frandsen, P.; Miyagi, M.; Clavijo, B. J.; Davey, J.; Dikow, R.; Garcia Accinelli, G.; Van Belleghem, S.; Patterson, N. J.; Neafsey, D. E.; Challis, R. J.; Kumar, S.; Moreira, G.; Salazar, C.; Chouteau, M.; Counterman, B.; Papa, R.; Blaxter, M.; Reed, R. D.; Dasmahapatra, K.; Kronforst, M.; Joron, M.; Jiggins, C. D.; McMillan, W. O.; Di-Palma, F.; Blumberg, A. J.; Wakeley, J.; Jaffe, D.; Mallet, J.

10.1101/466292 — evolutionary biology — Posted on 2018-11-10

1773 Show the model - A Harrell plot combines a forest plot of effects and uncertainty with a dot plot of the data

Walker, J. A.

10.1101/458182 — scientific communication and education — Posted on 2018-11-10

1774 Assessing key decisions for transcriptomic data integration in biochemical networks

Richelle, A.; Joshi, C.; Lewis, N. E.

10.1101/301945 — systems biology — Posted on 2018-11-10

1775 Comparing DNA, RNA and protein levels for measuring microbial activity in nitrogen-amended soils

Orellana, L. H.; Hatt, J.; Iyer, R.; Chourey, K.; Hettich, R. L.; Spain, J.; Yang, W. H.; Chee-Sanford, J.; Sanford, R. A.; Löffler, F. E.; Konstantinidis, K. T.

10.1101/466680 — microbiology — Posted on 2018-11-10

1776 Genetic analysis reveals novel roles for mei-MCMs during meiotic recombination in Drosophila

Hatkevich, T.; Sekelsky, J.; Hartmann, M. A.; Kohl, K. P.

10.1101/467134 — genetics — Posted on 2018-11-10

1777 Repeated evolution of asexuality involves convergent gene expression changes

Parker, D. J.; Bast, J.; Jalvingh, K.; Dumas, Z.; Robinson-Rechavi, M.; Schwander, T.

10.1101/364869 — evolutionary biology — Posted on 2018-11-10

1778 Human brain activity during mental imagery exhibits signatures of inference in a hierarchical generative model

Breedlove, J. L.; St-Yves, G.; Olman, C. A.; Naselaris, T.

10.1101/462226 — neuroscience — Posted on 2018-11-10

1779 Dynamics of age-related catastrophic mitotic failures and recovery in yeast

Crane, M. M.; Russell, A. E.; Schafer, B. J.; Hong, M. G.; Goings, J. E.; Chen, K. L.; Blue, B. W.; Kaeberlein, M.

10.1101/466797 — cell biology — Posted on 2018-11-09

1780 The discovery of three new hare lagoviruses reveals unexplored viral diversity in this genus

Mahar, J. E.; Hall, R. N.; Shi, M.; Mourant, R.; Huang, N.; Strive, T.; Holmes, E. C.

10.1101/466557 — microbiology — Posted on 2018-11-09

1781 Improved spatial ecological sampling using open data and standardization: an example from malaria mosquito surveillance

Sedda, L.; Lucas, E. R.; Djogbenou, L. S.; Edi, A. V. C.; Egyr-Yawson, A.; Kabula, B. I.; Midega, J.; Ochomo, E.; Weetman, D.; Donnelly, M. J.

10.1101/465963 — ecology — Posted on 2018-11-09

1782 Tethered homing gene drives: a new design for spatially restricted population replacement and suppression

Dhole, S.; Loyd, A. L.; Gould, F.

10.1101/457564 — bioengineering — Posted on 2018-11-09

1783 Detecting adaptive differentiation in structured populations with genomic data and common gardens

Josephs, E. B.; Berg, J. J.; Ross-Ibarra, J.; Coop, G.

10.1101/368506 — evolutionary biology — Posted on 2018-11-09

1784 Consequences of breed formation on patterns of genomic diversity and differentiation: the case of highly diverse peripheral Iberian cattle

da Fonseca, R. R.; Urena, I.; Afonso, S.; Pires, A. E.; Jorsboe, E.; Chikhi, L.; Ginja, C.

10.1101/466821 — evolutionary biology — Posted on 2018-11-09

1785 Naproxen impairs load-induced bone formation, reduces bone toughness, and delays stress fracture repair in mice

Park, J.; Fertala, A.; Tomlinson, R.

10.1101/427138 — bioengineering — Posted on 2018-11-09

1786 Phase separation and nucleosome compaction are governed by the same domain of Polycomb Repressive Complex 1

Plys, A. J.; Davis, C. P.; Kim, J.; Rizki, G.; Keenen, M. M.; Marr, S. K.; Kingston, R. E.

10.1101/467316 — molecular biology — Posted on 2018-11-09

1787 The LIM-Only Protein FHL2 is Involved in Autophagy to Regulate the Development of Skeletal Muscle

Liu, Z.; Han, S.; Wang, Y.; He, H.; Shen, X.; Chen, Y.; Cui, C.; Zhang, Y.; Ye, L.; Li, D.; Zhao, X.; Du, H.; Jiang, X.; Yu, C.; Li, Q.; Zhu, Q.; Yang, C.; Yin, H.

10.1101/459800 — molecular biology — Posted on 2018-11-09

1788 Nano immunoconjugates crossing blood-brain barrier activate local brain tumor immune system for glioma treatment

Galstyan, A.; Chiechi, A.; Korman, A. J.; Sun, T.; Isreal, L. L.; Braubach, O.; Patil, R.; Shatalova, E.; Ljubimov, V. A.; Markman, J.; Grodzinski, Z.; Black, K. L.; Penichet, M. L.; Holler, E.; Ljubimov, A. V.; Ding, H.; Ljubimova, J. Y.

10.1101/466508 — immunology — Posted on 2018-11-09

1789 ChIPulate : A comprehensive ChIP-seq simulation pipeline

Datta, V.; Hannenhalli, S. S.; Siddharthan, R.

10.1101/467241 — bioinformatics — Posted on 2018-11-09

1790 Inference of Differential Gene Regulatory Networks Based on Gene Expression and Genetic Perturbation Data

Zhou, X.; Cai, X.

10.1101/466623 — bioinformatics — Posted on 2018-11-09

1791 Social learning strategies regulate the wisdom and madness of interactive crowds

Toyokawa, W.; Whalen, A.; Laland, K. N.

10.1101/326637 — animal behavior and cognition — Posted on 2018-11-09

1792 Cell-Type Selective Markers Represented in Whole-Kidney RNA-Seq Data

Clark, J. Z.; Chen, L.; Chou, C.-L.; Jung, H. J.; Lee, J. W.; Knepper, M. A.

10.1101/348615 — systems biology — Posted on 2018-11-09

1793 SIMNETS: a computationally efficient and scalable framework for identifying networks of functionally similar neurons

Hynes, J. B.; Brandman, D. M.; Zimmerman, J. B.; Donoghue, J. P.; Vargas-Irwin, C. E.

10.1101/463364 — neuroscience — Posted on 2018-11-09

1794 mtDNA recombination indicative of hybridization suggests a role of the mitogenome in the adaptation of reef building corals to extreme environments

Banguera-Hinestroza, E.; Sawall, Y.; Al-Sofyani, A.; Mardulyn, P.; Fuertes-Aguilar, J.; Cardenas-Henao, H.; Jimenez-Infante, F.; Voolstra, C. R.; Flot., J.-F.

10.1101/462069 — evolutionary biology — Posted on 2018-11-09

1795 Kinesin-Binding Protein (KBP) buffers the activity of Kif18A and Kif15 in mitosis to ensure accurate chromosome segregation

Malaby, H. L. H.; Dumas, M. E.; Ohi, R.; Stumpff, J.

10.1101/343046 — cell biology — Posted on 2018-11-09

1796 Continuous embeddings of DNA sequencing reads, and application to metagenomics

Menegaux, R.; Vert, J.-P.

10.1101/335943 — bioinformatics — Posted on 2018-11-09

1797 Effects of rising amyloidβ levels on hippocampal synaptic transmission, microglial response and cognition in APPSwe/PSEN1M146V transgenic mice

Medawar, E.; Benway, T.; Liu, W.; Hanan, T. A.; Haslehurst, P.; James, O. T.; Yap, K.; Muessig, L.; Moroni, F.; Nahaboo Solim, M. A.; Baidildinova, G.; Wang, R.; Richardson, J. C.; Cacucci, F.; Salih, D. A.; Cummings, D. M.; Edwards, F. A.

10.1101/420349 — neuroscience — Posted on 2018-11-09

1798 Linking Branch Lengths Across Loci Provides the Best Fit for Phylogenetic Inference

Duchene, D. A.; Tong, K. J.; Foster, C. S. P.; Duchene, S.; Lanfear, R.; Ho, S. Y. W.

10.1101/467449 — evolutionary biology — Posted on 2018-11-09

1799 Human Dental Pulp Stem Cells Grown In Neurogenic Media Differentiate Into Endothelial Cells And Promote Neovasculogenesis In The Mouse Brain.

Luzuriaga, J.; Pastor-Alonso, O.; Encinas, J. M.; Unda, F.; Ibarretxe, G.; Pineda, J. R.

10.1101/467035 — bioengineering — Posted on 2018-11-09

1800 Injectable osteogenic microtissues containing mesenchymal stromal cells conformally fill and repair critical-size defects

Annamalai, R. T.; Hong, X.; Schott, N.; Tiruchinapally, G.; Levi, B.; Stegemann, J.

10.1101/362772 — bioengineering — Posted on 2018-11-09

1801 The pro-oncogenic adaptor CIN85 inhibits hypoxia-inducible factor prolyl hydroxylase-2

10.1101/466946 — biochemistry — Posted on 2018-11-09

1802 Development of a genetically encoded sensor for endogenous CaMKII activity

Ardestani, G.; West, M.; Maresca, T. J.; Fissore, R. A.; Stratton, M. M.

10.1101/359398 — biochemistry — Posted on 2018-11-09

1803 Two bifunctional inositol pyrophosphate kinases/phosphatases control plant phosphate homeostasis.

Zhu, J.; Lau, K.; Harmel, R. K.; Puschmann, R.; Broger, L.; Dutta, A. K.; Jessen, H. J.; Hothorn, L. A.; Fiedler, D.; Hothorn, M.

10.1101/467076 — plant biology — Posted on 2018-11-09

1804 Ultra-high field MRI reveals mood-related circuit disturbances in depression: A systematic comparison between 3-Tesla and 7-Tesla

Morris, L.; Kundu, P.; Costi, S.; Collins, A.; Schneider, M.; Verma, G.; Balchandani, P.; Murrough, J. W.

10.1101/459479 — neuroscience — Posted on 2018-11-09

1805 A SENtence Supramodal Areas AtlaS (SENSAAS) based on multiple task-induced activation mapping and graph analysis of intrinsic connectivity in 144 healthy right-handers

Labache, L.; Joliot, M.; Saracco, J.; Jobard, G.; Hesling, I.; Zago, L.; Mellet, E.; Petit, L.; Crivello, F.; Mazoyer, B.; Tzourio-Mazoyer, N.

10.1101/273227 — neuroscience — Posted on 2018-11-09

1806 A Modified Hodgkin-Huxley model to Show the Effect of Motor Cortex Stimulation on the Trigeminal Neuralgia Network

Khoadashenas, M.; Baghdadi, G.; Towhidkhah, F.

10.1101/467100 — neuroscience — Posted on 2018-11-09

1807 Differential binding cell-SELEX: method for identification of cell specific aptamers using high throughput sequencing

Pleiko, K.; Saulite, L.; Parfejevs, V.; Miculis, K.; Vjaters, E.; Riekstina, U.

10.1101/466722 — molecular biology — Posted on 2018-11-09

1808 The Effect of Proportion and Degree of Resistance of CD4+ Lymphocytes on in vivo HIV dynamics

Cole, A. O.; Luboobi, L. S.; Mbogo, R. W.

10.1101/466672 — immunology — Posted on 2018-11-09

1809 Cardioprotection by the mitochondrial unfolded protein response (UPRmt) is mediated by activating transcription factor 5 (ATF5)

Wang, Y. T.; Lim, Y.; McCall, M. N.; Haynes, C. M.; Nehrke, K. W.; Brookes, P. S.

10.1101/344606 — cell biology — Posted on 2018-11-09

1810 Interleukin-8/CXCR2 signaling regulates therapy-induced plasticity and enhances tumorigenicity in glioblastoma

Hasan, T.; Caragher, S. P.; Shireman, J. M.; Park, C. H.; Atashi, F.; Baisiwala, S.; Lee, G.; Guo, D.; Wu, M.; Wang, J. Y.; Dey, M.; Lesniak, M. S.; Horbinski, C. M.; James, C. D.; Ahmed, A. U.

10.1101/454553 — cancer biology — Posted on 2018-11-09

1811 Tissue-Specific Enrichment Analysis (TSEA) to decode tissue specificity

Pei, G.; Dai, Y.; Zhao, Z.; Jia, P.

10.1101/456293 — bioinformatics — Posted on 2018-11-09

1812 Female variation in allocation of steroid hormones, antioxidants and fatty acids: a multilevel analysis in a wild passerine bird

Mentesana, L.; Isaksson, C.; Goymann, W.; Andersson, M. N.; Trappschuh, M.; Hau, M.

10.1101/467258 — physiology — Posted on 2018-11-09

1813 Suppression and facilitation of motion perception in humans

Tzvetanov, T.

10.1101/465807 — neuroscience — Posted on 2018-11-09

1814 Evidence for allocentric boundary and goal direction information in the human entorhinal cortex and subiculum

Shine, J.; Valdes-Herrera, J. P.; Tempelmann, C.; Wolbers, T.

10.1101/466789 — neuroscience — Posted on 2018-11-09

1815 A mutant bacteriophage evolved to infect resistant bacteria gained a broader host range

Habusha, M.; Tzipilevich, E.; Ben Yehuda, S.

10.1101/466383 — microbiology — Posted on 2018-11-09

1816 Aged insulin resistant macrophages reveal dysregulated cholesterol biosynthesis, a pro-inflammatory profile and reduced foam cell formation capacity

Chabrier, G.; Hobson, S.; Yuldasheva, N.; Kearney, M. T.; Schurmans, S.; Pineda-Torra, I.; Gage, M. C.

10.1101/467118 — immunology — Posted on 2018-11-09

1817 Modular co-option of cardiopharyngeal genes during non-embryonic myogenesis

Pruenster, M. M.; Ricci, L. F.; Brown, F.; Tiozzo, S.

10.1101/443747 — developmental biology — Posted on 2018-11-09

1818 Rickettsia Sca2 Recruits Two Actin Subunits for Nucleation but Lacks WH2 Domains

Alqassim, S. S.; Lee, I.-G.; Dominguez, R.

10.1101/467431 — biochemistry — Posted on 2018-11-09

1819 Comparative Transcriptome and Methylome Analysis in Human Skeletal Muscle Anabolism, Hypertrophy and Epigenetic Memory.

Turner, D. C.; Seaborne, R. A.; Sharples, A. P.

10.1101/465708 — physiology — Posted on 2018-11-09

1820 Restoring memory by optogenetic synchronization of hippocampal oscillations in an Alzheimer’s disease mouse model

Ambrad Giovannetti, E.; Poll, S.; Justus, D.; Kaneko, H.; Fuhrmann, F.; Steffen, J.; Remy, S.; Fuhrmann, M.

10.1101/363820 — neuroscience — Posted on 2018-11-09

1821 Development of the Linguistic Evaluation of Prefrontal Synthesis (LEPS) test for children with language delay

Vyshedskiy, A.; DuBois, M.; Mugford, E.; Piryatinsky, I.

10.1101/467183 — neuroscience — Posted on 2018-11-09

1822 Dynamics of age-related catastrophic mitotic failures and recovery in yeast

Crane, M. M.; Russell, A. E.; Schafer, B. J.; Hong, M. G.; Goings, J. E.; Chen, K. L.; Blue, B. W.; Kaeberlein, M.

10.1101/466797 — molecular biology — Posted on 2018-11-09

1823 Prolonged Antibiotic Treatment Generates a Fluoroquinolone Resistant Gut Microbiome and Collateral Multi-Drug Resistance

Dubinsky, V.; Reshef, L.; Bar, N.; Rabinowitz, K.; Godny, L.; Tulchinsky, H.; Gophna, U.; Dotan, I.

10.1101/467001 — microbiology — Posted on 2018-11-09

1824 Extensive mitochondrial population structure and haplotype-specific phenotypic variation in the Drosophila Genetic Reference Panel

Bevers, R. P.; Litovchenko, M.; Kapopoulou, A.; Braman, V. S.; Robinson, M. R.; Auwerx, J.; Hollis, B.; Deplancke, B.

10.1101/466771 — genomics — Posted on 2018-11-09

1825 Behavioral evolution drives hindbrain diversification among Lake Malawi cichlid fish

York, R.; Byrne, A.; Abdilleh, K.; Patel, C.; Todd, S.; Finger, T.; Fernald, R.

10.1101/467282 — evolutionary biology — Posted on 2018-11-09

1826 A phylogenomic framework, evolutionary timeline, and genomic resources for comparative studies of decapod crustaceans

Wolfe, J. M.; Breinholt, J. W.; Crandall, K. A.; Lemmon, A. R.; Moriarty Lemmon, E.; Timm, L. E.; Siddall, M. E.; Bracken-Grissom, H. D.

10.1101/466540 — evolutionary biology — Posted on 2018-11-09

1827 High-Resolution, Long-Term Trends in Relative Abundance from Spatial Modeling of Continent-Wide Bird Counts

Meehan, T. D.; Michel, N. L.; Rue, H.

10.1101/466425 — ecology — Posted on 2018-11-09

1828 Recent trends in Tricolored Blackbird colony size: analysis of the 2008 through 2017 Triennial Statewide Surveys

Meehan, T. D.; Arthur, S.; Michel, N. L.; Wilsey, C. B.; Langham, G. M.

10.1101/466532 — ecology — Posted on 2018-11-09

1829 Single-cell RNA sequencing reveals a dynamic stromal niche within the evolving tumour microenvironment

Davidson, S.; Efremova, M.; Riedel, A.; Mahata, B.; Pramanik, J.; Huuhtanen, J.; Kar, G.; Vento-Tormo, R.; Hagai, T.; Chen, X.; A. Haniffa, M.; D. Shields, J.; A. Teichmann, S.

10.1101/467225 — cancer biology — Posted on 2018-11-09

1830 Activation of dopamine receptor 2 (DRD2) prompts transcriptomic and metabolic plasticity in glioblastoma

Caragher, S. P.; Shireman, J. M.; Huang, M.; Miska, J.; Baisiwala, S.; Park, C.; Saathoff, M.; Warnke, L.; Xiao, T.; Lesniak, M. S.; James, C. D.; Meltzer, H.; Tryba, A. K.; Ahmed, A. U.

10.1101/454389 — cancer biology — Posted on 2018-11-09

1831 PhenotypeXpression: sub-classification of disease states using public gene expression data and literature

Wang, L. L.; Lin, H.; Bao, X.; Sengupta, S.; Busby, B.; Butler, R. R.

10.1101/461301 — bioinformatics — Posted on 2018-11-09

1832 Structure, dynamics and roX2-lncRNA binding of tandem double-stranded RNA binding domains dsRBD1,2 of Drosophila helicase Maleless

Jagtap, P. K. A.; Mueller, M.; Masiewicz, P.; von Buelow, S.; Hollmann, N. M.; Simon, B.; Thomae, A. W.; Becker, P. B.; Hennig, J.

10.1101/466763 — biochemistry — Posted on 2018-11-09

1833 Multiple Duration Priors Within and Across the Senses

Rhodes, D.; Seth, A. K.; Roseboom, W.

10.1101/467027 — animal behavior and cognition — Posted on 2018-11-09

1834 Metastable regimes and tipping points of biochemical networks with potential applications in precision medicine

Samal, S. S.; Krishnan, J.; Esfahan, A. i. H.; Lueders, C.; Weber, A.; Radulescu, O.

10.1101/466714 — systems biology — Posted on 2018-11-09

1835 Tamoxifen improves glucose tolerance in a delivery, sex, and strain-dependent manner in mice

Ceasrine, A. M.; Lin, E. E.; Lumelsky, D. N.; Ruiz-Otero, N.; Boehm, E. D.; Kuruvilla, R.

10.1101/467266 — physiology — Posted on 2018-11-09

1836 The orexin-1 receptor antagonist SB-334867 reduces motivation, but not inhibitory control, in a rat stop signal task

Wiskerke, J.; James, M. H.; Aston-Jones, G.

10.1101/467308 — neuroscience — Posted on 2018-11-09

1837 Memory trace superimposition impairs recall in a mouse model of AD

Poll, S.; Schmid, L. C.; Steffen, J.; Wagner, J.; Schmidt, B.; Jackson, W. S.; Schoch, S.; Ehninger, D.; Fuhrmann, M.

10.1101/467043 — neuroscience — Posted on 2018-11-09

1838 Shifts in microbial transcription patterns prior to onset of Necrotizing enterocolitis may indicate low oxygen levels in the gut

Sher, Y.; Olm, M. R.; Raveh-Sadka, T.; Brown, C. T.; Sher, R.; Firek, B.; Baker, R.; Morowitz, M.; Banfield, J.

10.1101/466417 — microbiology — Posted on 2018-11-09

1839 Nanopore native RNA sequencing of a human poly(A) transcriptome

Workman, R. E.; Tang, A.; Tang, P. S.; Jain, M.; Tyson, J. R.; Zuzarte, P. C.; Gilpatrick, T.; Razaghi, R.; Quick, J.; Sadowski, N.; Holmes, N.; Goes de Jesus, J.; Jones, K.; Snutch, T. P.; Loman, N. J.; Paten, B.; Loose, M. W.; Simpson, J. T.; Olsen, H. E.; Brooks, A. N.; Akeson, M.; Timp, W.

10.1101/459529 — genomics — Posted on 2018-11-09

1840 Chromosome-wide evolution and sex determination in a nematode with three sexes

Tandonnet, S.; Koutsovoulos, G.; Adams, S.; Cloarec, D.; Parihar, M.; Blaxter, M.; Pires da Silva, A.

10.1101/466961 — genetics — Posted on 2018-11-09

1841 A key role for UV sex chromosomes in the regulation of parthenogenesis in the brown alga Ectocarpus

Mignerot, L.; Avia, K.; Luthringer, R.; Lipinska, A.; Peters, A. F.; Cock, J. M.; Coelho, S.

10.1101/466862 — evolutionary biology — Posted on 2018-11-09

1842 The evolutionary advantage of cultural memory on heterogeneous contact networks

Carja, O.; Creanza, N.

10.1101/466524 — evolutionary biology — Posted on 2018-11-09

1843 Ensemble projections of global ocean animal biomass with climate change

Lotze, H. K.; Tittensor, D. P.; Bryndum-Buchholz, A.; Eddy, T. D.; Cheung, W. W.; Galbraith, E. D.; Barange, M.; Barrier, N.; Bianchi, D.; Blanchard, J. L.; Bopp, L.; Buechner, M.; Bulman, C.; Carozza, D. A.; Christensen, V.; Coll, M.; Dunne, J.; Fulton, E. A.; Jennings, S.; Jones, M.; Mackinson, S.; Maury, O.; Niiranen, S.; Oliveros-Ramos, R.; Roy, T.; Fernandes, J. A.; Schewe, J.; Shin, Y.-J.; Silva, T. A.; Steenbeek, J.; Stock, C. A.; Verley, P.; Volkholz, J.; Walker, N. D.

10.1101/467175 — ecology — Posted on 2018-11-09

1844 Dynamic Graphical Models of Molecular Kinetics

Olsson, S.; Noe, F.

10.1101/467050 — biophysics — Posted on 2018-11-09

1845 Red muscle activity in bluegill sunfish Lepomis macrochirus during forward accelerations

Schwalbe, M. A. B.; Boden, A. L.; Wise, T. N.; Tytell, E. D.

10.1101/459990 — biophysics — Posted on 2018-11-09

1846 Filamentous aggregates are fragmented by the proteasome holoenzyme

Cliffe, R.; Sang, J. C.; Kundel, F.; Finley, D.; Klenerman, D.; Ye, Y.

10.1101/467068 — biophysics — Posted on 2018-11-09

1847 A New Method to Correct for Habitat Filtering in Microbial Correlation Networks

Brisson, V.; Schmidt, J.; Northen, T. R.; Vogel, J. P.; Gaudin, A.

10.1101/467365 — bioinformatics — Posted on 2018-11-09

1848 Novel autoregulatory cases of alternative splicing coupled with nonsense-mediated mRNA decay

Pervouchine, D.; Popov, I.; Berry, A.; Borsari, B.; Frankish, A.; Guigo, R.

10.1101/464404 — bioinformatics — Posted on 2018-11-09

1849 Translationally Controlled Tumor Protein TCTP as Peptide Vaccine against Schistosoma japonicum: an Immunoinformatics Approach

Abdalrahman, R. A.; Ahmed, S. S.; Elnaeem, M. A.; Mohammed, M. S.; Jammie, N. M.; Yousif, I. A.; Mohamed, W. H.; Nasr, S. Y.; Awad-Elkareem, M. A.; Hassan, M. A.

10.1101/466847 — bioinformatics — Posted on 2018-11-09

1850 Mesenchymal stem cell derived exosomes enhance lymphangiogenesis via exosomal transfer of Ang-2/Tie2

Zhao, T.; Yan, Z.; Liu, J.; Sun, H.; Chen, Y.; Tao, Y.; Xu, W.; Qian, H.; Yan, Y.

10.1101/466987 — bioengineering — Posted on 2018-11-09

1851 Global analysis of methionine oxidation provides a census of folding stabilities for the human proteome

Walker, E. J.; Bettinger, J. Q.; Welle, K. A.; Hryhorenko, J. R.; Ghaemmaghami, S.

10.1101/467290 — biochemistry — Posted on 2018-11-09

1852 Subspecies and sexual craniofacial size and shape variations in Japanese macaques (Macaca fuscata)

Yano, W.; Egi, N.; Takano, T.; Naomichi, N.

10.1101/467456 — zoology — Posted on 2018-11-09

1853 A Neurophysiological Measure of Reward Sensitivity and its Limited Association with Anhedonia in Adolescents and Young Adults

Frank, D. W.; Stevens, E. M.; Versace, F.

10.1101/467217 — neuroscience — Posted on 2018-11-09

1854 Widespread conservation of chromatin accessibility patterns and transcription factor binding in human and chimpanzee induced pluripotent stem cells

Gallego Romero, I.; Gopalakrishnan, S.; Gilad, Y.

10.1101/466631 — genomics — Posted on 2018-11-09

1855 Reannotation of the ribonucleotide reductase in a cyanophage reveals life history strategies within the virioplankton

Harrison, A. O.; Moore, R. M.; Polson, S. W.; Wommack, K. E.

10.1101/467415 — bioinformatics — Posted on 2018-11-09

1856 Atomic view into Plasmodium actin polymerization, ATP hydrolysis, and phosphate release

Kumpula, E.-P.; Lopez, A. J.; Tajedin, L.; Han, H.; Kursula, I.

10.1101/467423 — biochemistry — Posted on 2018-11-09

1857 Evidence of quantum consciousness in evoked zero-spin echoes

Kerskens, C.; Lopez Perez, D.

10.1101/219931 — biophysics — Posted on 2018-11-09

1858 Confidence as a diagnostic tool for perceptual aftereffects

Gallagher, R.; Suddendorf, T.; Arnold, D.

10.1101/270280 — neuroscience — Posted on 2018-11-09

1859 Impact of chromosome fusions on 3D genome organization and gene expression in budding yeast

Di Stefano, M.; Di Giovanni, F.; Bau, D.; Carey, L. B.; Marti-Renom, M. A.; Mendoza, M.

10.1101/237263 — cell biology — Posted on 2018-11-09

1860 Field induced cell proliferation and death in a thick epithelium

Sarkar, N.; Prost, J.; Julicher, F.

10.1101/467159 — biophysics — Posted on 2018-11-09

1861 Mitotic phosphorylation by Nek6 and Nek7 reduces microtubule affinity of EML4 to alter spindle dynamics and promote chromosome congression

Fry, A. M.; Adib, R.; Montgomery, J. M.; Atherton, J.; O'Regan, L.; Richards, M.; Straatman, K. R.; Roth, D.; Straube, A.; Bayliss, R.; Moores, C. A.

10.1101/466979 — cell biology — Posted on 2018-11-09

1862 Predicting the fundamental thermal niche of crop pests and diseases in a changing world: a case study on citrus greening

Taylor, R. A.; Ryan, S. J.; Lippi, C. A.; Hall, D. G.; Narouei-Khandan, H. A.; Rohr, J. R.; Johnson, L. R.

10.1101/465898 — epidemiology — Posted on 2018-11-09

1863 Integrating water, sanitation, handwashing, and nutrition interventions to reduce child soil-transmitted helminth and Giardia infections: a cluster-randomized controlled trial in rural Kenya

Pickering, A.; Njenga, S.; Steinbaum, L.; Swarthout, J.; Lin, A.; Arnold, B.; Stewart, C.; Dentz, H.; Mureithi, M.; Chieng, B.; Wolfe, M.; Mahoney, R.; Kihara, J.; Byrd, K.; Rao, G.; Meerkerk, T.; Cheruiyot, P.; Papaiakovou, M.; Pilotte, N.; Williams, S.; Colford, J.; Null, C.

10.1101/464917 — clinical trials — Posted on 2018-11-09

1864 A proof of concept for a syndromic surveillance system based on routine ambulance records in the South-West of England, for the influenza season 2016/17.

Reich, T.; Budka, M.

10.1101/462341 — epidemiology — Posted on 2018-11-09

1865 A Double-Blind Pilot Dosing Study of Low Field Magnetic Stimulation (LFMS) for Treatment-Resistant Depression (TRD)

Dubin, M. J.; Ilieva, I.; Deng, Z.-D.; Thomas, J.; Cochran, A.; Kravets, K.; Brody, B. D.; Christos, P. J.; Kocsis, J. H.; Liston, C.; Gunning, F. M.

10.1101/465013 — clinical trials — Posted on 2018-11-09

1866 Prawn aquaculture as a method for schistosomiasis control and poverty alleviation: a win-win approach to address a critical infectious disease of poverty

Hoover, C. M.; Sokolow, S. H.; Kemp, J.; Sanchirico, J. N.; Lund, A. J.; Jones, I.; Higginson, T.; Riveau, G.; Savaya-Alkalay, A.; Coyle, S.; Wood, C. L.; Micheli, F.; Casagrandi, R.; Mari, L.; Gatto, M.; Rinaldo, A.; Perez-Saez, J.; Rohr, J. R.; Sagi, A.; Remais, J. V.; De Leo, G. A.

10.1101/465195 — epidemiology — Posted on 2018-11-09

1867 The association between low-density lipoprotein cholesterol predicted by HMGCR genetic variants and breast cancer risk may be mediated by body mass index

Kar, S. P.; Brenner, H.; Giles, G. G.; Huo, D.; Milne, R. L.; Rennert, G.; Simard, J.; Zheng, W.; Burgess, S.; Pharoah, P. D. P.

10.1101/464446 — epidemiology — Posted on 2018-11-09

1868 The association between weight at birth and breast cancer risk revisited using Mendelian randomisation

Kar, S. P.; Andrulis, I. L.; Brenner, H.; Burgess, S.; Chang-Claude, J.; Considine, D.; Doerk, T.; Evans, D. G. R.; Gago-Dominguez, M.; Giles, G. G.; Hartman, M.; Huo, D.; Kaaks, R.; Li, J.; Lophatananon, A.; Margolin, S.; Milne, R. L.; Muir, K. R.; Olsson, H.; Punie, K.; Radice, P.; Simard, J.; Tamimi, R. M.; Van Nieuwenhuysen, E.; Wendt, C.; Wei, Z.; Pharoah, P. D. P.

10.1101/464115 — epidemiology — Posted on 2018-11-09

1869 Spatial epidemiology of gestational age and birth weight in Switzerland: Census-based linkage study

Skrivankova, V.; Zwahlen, M.; Adams, M.; Low, N.; Kuehni, C.; Egger, M.

10.1101/466854 — epidemiology — Posted on 2018-11-09

1870 Modeling the relative role of human mobility, land-use and climate factors on dengue outbreak emergence in Sri Lanka

Zhang, Y.; Riera, J.; Ostrow, K.; Siddiqui, S.; de Silva, H.; Sarkar, S.; Fernando, L.; Gardner, L.

10.1101/462150 — epidemiology — Posted on 2018-11-09

1871 Levels of histidine-rich glycoprotein in human blood predict accelerated aging

Hong, M.-G.; Dodig-Crnkovic, T.; Chen, X.; Drobin, K.; Lee, W.; Sjöberg, R.; Odeberg, J.; Hamsten, A.; Silveira, A.; Hall, P.; Nilsson, P.; Pawitan, Y.; Hägg, S.; Uhlen, M.; Pedersen, N. L.; Magnusson, P. K. E.; Schwenk, J. M.

10.1101/464909 — epidemiology — Posted on 2018-11-09

1872 Prevalence of Soil Transmitted Helminthes (STHs) Among Pupils of Community Primary Schools in Nkpor and Mgbodohia, Obio/Akpor Local Government Area, Rivers State, Nigeria.

Gboeloh, L. B.; Ndamzi, I.-I. C.

10.1101/464008 — epidemiology — Posted on 2018-11-09

1873 Characterization of proprioceptive system dynamics in behaving Drosophila larvae using high-speed volumetric microscopy

Vaadia, R.; Li, W.; Voleti, V.; Singhania, A.; Hillman, E. M. C.; Grueber, W. B.

10.1101/467274 — neuroscience — Posted on 2018-11-09

1874 Proprioceptive neurons of larval Drosophila melanogaster show direction selective activity requiring the mechanosensory channel TMC.

He, L.; Gulyanon, S.; Mihovilovic Skanata, M.; Karagyozov, D.; Heckscher, E.; Krieg, M.; Tschekpenakis, G.; Gershow, M.; Tracey, D.

10.1101/463216 — neuroscience — Posted on 2018-11-09

1875 Identification of potential microRNAs associated with Herpesvirus family based on bioinformatic analysis

Lamkiewicz, K.; Barth, E.; Marz, M.; Ibrahim, B.

10.1101/417782 — bioinformatics — Posted on 2018-11-09

1876 Michigan Neural Distinctiveness (MiND) project: Investigating the scope, causes, and consequences of age-related neural dedifferentiation

Gagnon, H.; Simmonite, M.; Cassady, K.; Chamberlain, J. D.; Freiburger, E.; Lalwani, P.; Kelley, S.; Foerster, B.; Park, D. C.; Petrou, M.; Seidler, R. D.; Taylor, S. F.; Weissman, D. H.; Polk, T. A.

10.1101/466516 — neuroscience — Posted on 2018-11-09

1877 Medial prefrontal cortex population activity is plastic irrespective of learning

Singh, A.; Peyrache, A.; Humphries, M. D.

10.1101/027102 — neuroscience — Posted on 2018-11-09

1878 Perceptron learning and classification in a modeled cortical pyramidal cell

Moldwin, T.; Segev, I.

10.1101/464826 — neuroscience — Posted on 2018-11-09

1879 Evolutionary characteristics of intergenic transcribed regions indicate widespread noisy transcription in the Poaceae

Lloyd, J. P.; Bowman, M. J.; Azodi, C. B.; Sowers, R. P.; Moghe, G. D.; Childs, K. L.; Shiu, S.-H.

10.1101/440933 — genomics — Posted on 2018-11-09

1880 The DeepTune framework for modeling and characterizing neurons in visual cortex area V4

Abbasi-Asl, R.; Chen, Y.; Bloniarz, A.; Oliver, M.; Willmore, B. D. B.; Gallant, J. L.; Yu, B.

10.1101/465534 — neuroscience — Posted on 2018-11-09

1881 Post-decisional sense of confidence shapes speed-accuracy tradeoff for subsequent choices

Desender, K.; Boldt, A.; Verguts, T.; Donner, T. H.

10.1101/466730 — neuroscience — Posted on 2018-11-09

1882 scRMD: Imputation for single cell RNA-seq data via robust matrix decomposition

Chen, C.; Wu, C.; Wu, L.; Wang, Y.; Deng, M.; Xi, R.

10.1101/459404 — bioinformatics — Posted on 2018-11-09

1883 Tailored perception: listeners’ strategies for perceiving speech fit their individual perceptual abilities

Jasmin, K.; Dick, F.; Holt, L.; Tierney, A. T.

10.1101/263079 — neuroscience — Posted on 2018-11-09

1884 Overt social interaction and resting state in young adult males with autism: core and contextual neural features

Jasmin, K.; Gotts, S.; Xu, Y.; Liu, S.; Riddell, C.; Ingeholm, J.; Kenworthy, L.; Wallace, G. L.; Braun, A. R.; Martin, A.

10.1101/332213 — neuroscience — Posted on 2018-11-09

1885 Autism sensory dysfunction in an evolutionarily conserved system

Vilidaite, G.; Norcia, A. M.; West, R. J. H.; Elliott, C. J. H.; Pei, F.; Wade, A. R.; Baker, D. H.

10.1101/297051 — neuroscience — Posted on 2018-11-09

1886 The Viral Protein Corona Directs Viral Pathogenesis and Amyloid Aggregation

Ezzat, K.; Pernemalm, M.; Palsson, S.; Roberts, T. C.; Jarver, P.; Dondalska, A.; Bestas, B.; Sobkowiak, M. J.; Levanen, B.; Skold, M.; Thompson, E. A.; Kari, O. K.; Lajunen, T.; Ishchenko, Y.; Malm, T.; Wood, M. J. A.; Power, U. F.; Masich, S.; Linden, A.; Sandberg, J. K.; Lehtio, J.; Spetz, A.-L.; Andaloussi, S. E.

10.1101/246785 — microbiology — Posted on 2018-11-09

1887 A mechanical model of the half-sarcomere which includes the contribution of titin

Pertici, I.; Caremani, M.; RECONDITI, M.

10.1101/435420 — biophysics — Posted on 2018-11-09

1888 In for a pound, in for a penny: How the opportunity to gain reward influences the competition for memory resources

Talmi, D.; Kavaliauskaite, D.; Daw, N. D.

10.1101/464388 — neuroscience — Posted on 2018-11-09

1889 Immune gene diversity in archaic and present-day humans

Reher, D.; Key, F. M.; Andres, A.; Kelso, J.

10.1101/348581 — genetics — Posted on 2018-11-09

1890 The concerted action of E2-2 and HEB is critical for early lymphoid specification

Bouderlique, T.; Pena Perez, L.; Kharazi, S.; Hils, M.; Li, X.; Krstic, A.; de Paepe, A.; Schachtrup, C.; Gustafsson, C.; Holmberg, D.; Schachtrup, K.; Mansson, R.

10.1101/465765 — immunology — Posted on 2018-11-09

1891 National Population and Cost Implications of Treatment with Icosapentyl Ethyl in the United States: An Assessment Based on the REDUCE-IT trial

Khera, R.; Valero-Elizondo, J.; Saxena, A.; Virani, S. S.; Krumholz, H. M.; Nasir, K.

10.1101/466649 — epidemiology — Posted on 2018-11-09

1892 A dynamic neural network model for real-time prediction of the Zika epidemic in the Americas

Akhtar, M.; Kraemer, M. U.; Gardner, L.

10.1101/466581 — epidemiology — Posted on 2018-11-09

1893 Melatonin attenuates mitochondrial and metabolic dysfunction caused by leptin deficiency

Potes, Y.; Luis, A. D.; Bermejo-Millo, J. C.; Perez-Martinez, Z.; de Luxan-Delgado, B.; Rubio-Gonzalez, A.; Valle, I. M.; Rodriguez, J. G.; Solano, J. J.; Caballero, B.; Naredo, I. V.; Coto-Montes, A.

10.1101/466995 — cell biology — Posted on 2018-11-09

1894 Adult Canine Intestinal Derived Organoids: A Novel In Vitro System for Translational Research in Comparative Gastroenterology

Chandra, L.; Borcherding, D. C.; Kingsbury, D.; Atherly, T.; Ambrosini, Y. M.; Bourgois-Mochel, A.; Yuan, W.; Kimber, M.; Qi, Y.; Wang, Q.; Wannemuehler, M.; Ellinwood, N. M.; Snella, E.; Martin, M.; Skala, M.; Meyerholz, D.; Estes, M.; Fernandez-Zapico, M. E.; Jergens, A. E.; Mochel, J. P.; Allenspach, K.

10.1101/466409 — cell biology — Posted on 2018-11-09

1895 PRMT1-mediated methylation of the Large Drosha Complex regulates microRNA biogenesis

Bonaldi, T.; Spadotto, V.; Giambruno, R.; Massignani, E.; Mihailovich, M.; Patuzzo, F.; Ghini, F.; Nicassio, F.

10.1101/466813 — cell biology — Posted on 2018-11-09

1896 The innate immune sensor Toll-like receptor 2 controls the senescence-associated secretory phenotype.

Hari, P.; Millar, F. R.; Tarrats, N.; Birch, J.; Rink, C. J.; Fernandez-Duran, I.; Muir, M.; Finch, A. J.; Brunton, V. G.; Passos, J. F.; Morton, J. P.; Boulter, L.; Acosta, J. C.

10.1101/466755 — cell biology — Posted on 2018-11-09

1897 Systems-level properties of EGFR/Ras/ERK signalling amplify local signals to generate gene expressionplasticity

Davies, A. E.; Gillies, T. E.; Siebert, S.; Pargett, M.; Tobin, S. J.; Ram, A. R.; Juliano, C.; Quon, G.; Bissell, M. J.; Albeck, J. G.

10.1101/466656 — cancer biology — Posted on 2018-11-09

1898 Evolution of gene regulatory networks by means of selection and random genetic drift

Kioukis, A.; Pavlidis, P.

10.1101/449645 — bioinformatics — Posted on 2018-11-09

1899 Prefrontal cortex creates novel navigation sequences from hippocampal place-cell replay with spatial reward propagation

Cazin, N.; Llofriu Alonso, M.; Scleidorovich Chiodi, P.; Pelc, T.; Harland, B.; Weitzenfeld, A.; Fellous, J.-M.; Dominey, P. F.

10.1101/466920 — neuroscience — Posted on 2018-11-09

1900 Characterization and Variation of the Rhizosphere Fungal Community Structure of Cultivated Tetraploid Cotton

Qiao, Q.; Zhang, J.; Ma, C.; Wang, F.; Chen, Y.; Zhang, C.; Zhang, H.; Zhang, J.

10.1101/466912 — ecology — Posted on 2018-11-09

1901 The distinct biochemical property enables thymidylate kinase as a drug target and participates in pyrimidine drug sensitivity in Candida albicans

Huang, C. Y.; Chen, Y.-C.; Wu-Hsieh, B. A.; Fang, J.-M.; Chang, Z.-F.; Chang-Yu Huang, Yee-Chun Chen, Betty A. Wu-Hsieh, Jim-Min Fang and Zee-Fen Chang,

10.1101/466938 — biochemistry — Posted on 2018-11-09

1902 Leafhopper Viral Pathogens: Ultrastructure of salivary gland infection of Taastrup-like virus in Psammotettix alienus Dahlbom; and a novel Rhabdovirus in Homalodisca vitripennis (Germar) Hemiptera: Cicadellidae]

Lundsgaard, T.; Hunter, W. B.; Adkins, S.

10.1101/465468 — pathology — Posted on 2018-11-08

1903 New de novo assembly of the Atlantic bottlenose dolphin (Tursiops truncatus) improves genome completeness and provides haplotype phasing.

Martinez-Viaud, K. A.; Lawley, C. T.; Vergara, M. M.; Ben-Zvi, G.; Biniashvili, T.; Baruch, K.; St. Leger, J.; Le, J.; Natarjan, A.; Rivera, M.; Guillergan, M.; Jaeger, E.; Steffy, B.; Zimin, A.

10.1101/376301 — genomics — Posted on 2018-11-08

1904 RNA is a critical element for the sizing and the composition of phase-separated RNA-protein condensates

Garcia-Jove Navarro, M.; Kashida, S.; Chouaib, R.; Souquere, S.; Pierron, G.; Weil, D.; Gueroui, Z.

10.1101/457986 — cell biology — Posted on 2018-11-08

1905 Differential gene expression supports a resource-intensive, defensive role for colony production in the bloom-forming haptophyte, Phaeocystis globosa

Mars Brisbin, M.; Mitarai, S.

10.1101/461756 — ecology — Posted on 2018-11-08

1906 Anywhere but here: local conditions alone drive dispersal in Daphnia

Erm, P.; Hall, M. D.; Phillips, B. L.

10.1101/334243 — ecology — Posted on 2018-11-08

1907 Tethered homing gene drives: a new design for spatially restricted population replacement and suppression

Dhole, S.; Loyd, A. L.; Gould, F.

10.1101/457564 — bioengineering — Posted on 2018-11-08

1908 The Transcriptional landscape of Streptococcus pneumoniae TIGR4 reveals a complex operon architecture and abundant riboregulation critical for growth and virulence

Warrier, I.; Ram-Mohan, N.; Zhu, Z.; Hazery, A.; Echlin, H.; Rosch, J.; Meyer, M. M.; van Opijnen, T.

10.1101/286344 — microbiology — Posted on 2018-11-08

1909 Share, but unequally: A plausible mechanism for emergence and maintenance of intratumor heterogeneity

Li, X.; Thirumalai, D.

10.1101/288670 — cancer biology — Posted on 2018-11-08

1910 MHCSeqNet: A deep neural network model for universal MHC binding prediction

Phloyphisut, P.; Pornputtanapong, N.; Sriswasdi, S.; Chuangsuwanich, E.

10.1101/371591 — bioinformatics — Posted on 2018-11-08

1911 Stability-normalised walking speed: a new approach for human gait perturbation research

McCrum, C.; Willems, P.; Karamanidis, K.; Meijer, K.

10.1101/314757 — bioengineering — Posted on 2018-11-08

1912 An automated, machine learning-based detection algorithm for spike-wave discharges (SWDs) in a mouse model of absence epilepsy

Pfammatter, J. A.; Maganti, R. K.; Jones, M. V.

10.1101/309146 — neuroscience — Posted on 2018-11-08

1913 Protein composition of the occlusion bodies of Epinotia aporema granulovirus

Masson, T.; Fabre, M. L.; Ferrelli, M. L.; Pidre, M. L.; Romanowski, V.

10.1101/465021 — microbiology — Posted on 2018-11-08

1914 Identification and characterization of genes encoding the nuclear envelope LINC complex in the monocot species Zea mays.

Gumber, H. K.; McKenna, J. F.; Estrada, A. L.; Tolmie, A. F.; Graumann, K.; Bass, H. W.

10.1101/343939 — cell biology — Posted on 2018-11-08

1915 Performance of semi-automated hippocampal subfield segmentation methods across ages in a pediatric sampl

Schlichting, M. L.; Mack, M. L.; Guarino, K. F.; Preston, A. R.

10.1101/064303 — neuroscience — Posted on 2018-11-08

1916 Crops and the seed mass-seed output trade-off in plants

Martin, A. R.

10.1101/466250 — ecology — Posted on 2018-11-08

1917 Lipid analysis of CO2-rich subsurface aquifers suggests an autotrophy-based deep biosphere with lysolipids enriched in CPR bacteria

Probst, A. J.; Elling, F. J.; Castelle, C. J.; Zhu, Q.; Elvert, M.; Birarda, G.; Holman, H.-Y.; Lane, K. R.; Ladd, B.; Ryan, M. C.; Woyke, T.; Hinrichs, K.-U.; Banfield, J. F.

10.1101/465690 — microbiology — Posted on 2018-11-08

1918 Global Quantitative Mapping of Enhancers in Rice Genome by STARR-seq

Sun, J.; He, N.; Niu, L.; Huang, Y.; Shen, W.; Zhang, Y.; Li, L.; Hou, C.

10.1101/465716 — genomics — Posted on 2018-11-08

1919 Dietary self-control depends on the latency and rate of information accumulation

Sullivan, N. J.; Huettel, S. A.

10.1101/465393 — neuroscience — Posted on 2018-11-08

1920 TGF-β Mediated Cell Adhesion Dynamics and Epithelial to Mesenchymal Transition in 3D and 2D Ovarian Cancer Models

Al Ameri, W.; Ahmed, I.; Al-Dasim, F. M.; Ali Mohamoud, Y.; Al-Azwani, I. K.; Malek, J. A.; Karedath, T.

10.1101/465617 — cancer biology — Posted on 2018-11-08

1921 Structural basis of hypoxic gene regulation by the Rv0081 transcription factor of Mycobacterium tuberculosis

Kumar, A.; Phulera, S.; Rizvi, A.; Sonawane, P.; Panwar, H. S.; Banerjee, S.; Sahu, A.; Mande, S. C.

10.1101/465575 — biophysics — Posted on 2018-11-08

1922 Human Nerve-on-a-Chip. Engineering 3D functional human peripheral nerve in vitro

Sharma, A. D.; McCoy, L.; Jacobs, E.; Willey, H.; Behn, J. Q.; Ngyuen, H.; Bolon, B.; Curley, J. L.; Moore, M. J.

10.1101/458463 — bioengineering — Posted on 2018-11-08

1923 Unitization modulates recognition of within-domain and cross-domain associations: Evidence from event related potentials

Li, B.; Han, M.; Guo, C.; Tibon, R.

10.1101/465336 — neuroscience — Posted on 2018-11-08

1924 A unique No-Go Decay cleavage in mRNA exit-tunnel of ribosome produces 5’-OH ends phosphorylated by Rlg1

Navickas, A.; Chamois, S.; Saint-Fort, R.; Henri, J.; Torchet, C.; Benard, L.

10.1101/465633 — molecular biology — Posted on 2018-11-08

1925 A polyploid admixed origin of beer yeasts derived from European and Asian wine populations

Fay, J.; Liu, P.; Ong, G.; Dunham, M.; Cromie, G.; Jeffrey, E.; Ludlow, C.; Dudley, A.

10.1101/466276 — evolutionary biology — Posted on 2018-11-08

1926 Inhibition of the 60S ribosome biogenesis GTPase LSG1 causes endoplasmic reticular disruption and cellular senescence

Pantazi, A.; Quintanilla, A.; Hari, P.; Tarrats, N.; Parasyraki, E.; Dix, F. L.; Patel, J.; Chandra, T.; Acosta, J. C.; Finch, A.

10.1101/463851 — cancer biology — Posted on 2018-11-08

1927 A story of nasal horns: A new species of Iguana Laurenti, 1768 (Squamata, Iguanidae) in Saint Lucia, St Vincent & the Grenadines, and Grenada (Southern Lesser Antilles) and its implications for the taxonomy of the genus Iguana

Breuil, M.; Vuillaume, B.; Schikorski, D.; Krauss, U.; Morton, M.; Haynes, P.; Daltry, J.; Corry, E.; Gaymes, G.; Gaymes, J.; Bech, N.; Jesic, M.; Grandjean, F.

10.1101/466128 — zoology — Posted on 2018-11-08

1928 Leafhopper Viral Pathogens: Ultrastructure of salivary gland infection of Taastrup-like virus in Psammotettix alienus Dahlbom; and a novel Rhabdovirus in Homalodisca vitripennis (Germar) Hemiptera: Cicadellidae]

Hunter, W. B.; Lundsgaard, T.; Adkins, S.

10.1101/465468 — pathology — Posted on 2018-11-08

1929 Brain neurosteroids are natural anxiolytics targeting α2 subunit γ-aminobutyric acid type-A receptors

Durkin, E. J.; Muessig, L.; Herlt, T.; Lumb, M. J.; Patel, R.; Thomas, P.; Bright, D. P.; Jurd, R.; Moss, S. J.; Dickenson, A. H.; Cacucci, F.; Smart, T. G.

10.1101/462457 — neuroscience — Posted on 2018-11-08

1930 DNA replication initiator proteins facilitate CENPA loading on early replicating compact chromatin

Sreekumar, L.; Jaitly, P.; Chen, Y.; Thimmappa, B. C.; Sanyal, A.; Narlikar, L.; Siddharthan, R.; Sanyal, K.

10.1101/465880 — molecular biology — Posted on 2018-11-08

1931 Desiccation Does Not Drastically Increase the Accessibility of Foreign DNA to the Nuclear Genomes: Evidence from the Frequency of Endosymbiotic DNA Transfer

Li, X.-X.; Fang, C.; Zhao, J.-P.; Zhou, X.-Y.; Ni, Z.; Niu, D.-K.

10.1101/465443 — evolutionary biology — Posted on 2018-11-08

1932 The role of substrate type, moisture and temperature on the vertical growth of terricolous lichens

Monge-Najera, J.

10.1101/466227 — ecology — Posted on 2018-11-08

1933 Semi-in vitro Reconstitution of Roseocin, a Two-Component Lantibiotic from an Actinomycete

Singh, M.; Sareen, D.

10.1101/464644 — biochemistry — Posted on 2018-11-08

1934 Subdivision of light signalling networks contributes to cellular partitioning of C4 photosynthesis in maize

Hendron, R.-W.; Kelly, S.

10.1101/465872 — plant biology — Posted on 2018-11-08

1935 SIMNETS: a computationally efficient and scalable framework for identifying networks of functionally similar neurons

Hynes, J. B.; Brandman, D. M.; Zimmerman, J. B.; Donoghue, J. P.; Vargas-Irwin, C. E.

10.1101/463364 — neuroscience — Posted on 2018-11-08

1936 Shank3 Modulates Sleep and Expression of Circadian Transcription Factors

Ingiosi, A.; Wintler, T. P.; Schoch, H.; Singletary, K. G.; Righelli, D.; Roser, L.; Risso, D.; Frank, M. G.; Peixoto, L.

10.1101/465799 — neuroscience — Posted on 2018-11-08

1937 Intravenous colistin use for infections due to multidrug-resistant gram-negative bacilli in critically ill paediatric patients: a systematic review and meta-analysis

Karageorgos, S. A.; Bassiri, H.; Siakallis, G.; Miligkos, M.; Tsioutis, C.

10.1101/465559 — microbiology — Posted on 2018-11-08

1938 Conserved type VI secretion regulation in diverse Vibrio species by the regulatory proteins TfoX and TfoY

Metzger, L. C.; Matthey, N.; Stoudmann, C.; Collas, E. J.; Blokesch, M.

10.1101/466458 — microbiology — Posted on 2018-11-08

1939 Overcoming non-small cell lung cancer radiation resistance by modulating the tumor-immune ecosystem

10.1101/458372 — immunology — Posted on 2018-11-08

1940 Population genomic analyses reveal a highly differentiated genetic cluster of northern goshawks (Accipiter gentilis laingi) in Haida Gwaii

Geraldes, A.; Askelson, K. K.; Nikelski, E.; Doyle, F. I.; Harrower, W. L.; Winker, K.; Irwin, D. E.

10.1101/465450 — genomics — Posted on 2018-11-08

1941 Distance-based Protein Folding Powered by Deep Learning

Xu, J.

10.1101/465955 — bioinformatics — Posted on 2018-11-08

1942 Maximizing the quality of NMR automatic metabolite profiling by a machine learning based prediction of signal parameters

Canueto, D.; Navarro, M.; Bullo, M.; Correig, X.; Canellas, N.

10.1101/466235 — bioinformatics — Posted on 2018-11-08

1943 Elucidating the genetic basis of biomass accumulation and radiation use efficiency in spring wheat and its role in yield potential

Molero, G.; Joynson, R.; Pinera-Chavez, F. J.; Gardiner, L.-J.; Rivera-Amado, C.; Hall, A.; Reynolds, M. P.

10.1101/465682 — plant biology — Posted on 2018-11-08

1944 Network remodeling induced by transcranial brain stimulation: A computational model of tDCS-triggered cell assembly formation

Lu, H.; Gallinaro, J. V.; Rotter, S.

10.1101/466136 — neuroscience — Posted on 2018-11-08

1945 Early detonation by sprouted mossy fibers enables aberrant dentate network activity

Hendricks, W. D.; Westbrook, G. L.; Schnell, E.

10.1101/466300 — neuroscience — Posted on 2018-11-08

1946 Bayesian computation through cortical latent dynamics

Sohn, H.; Narain, D.; Meirhaeghe, N.; Jazayeri, M.

10.1101/465419 — neuroscience — Posted on 2018-11-08

1947 PARIS, an optogenetic method for functionally mapping gap junctions

Wu, L.; Dong, A.; Dong, L.; Wang, S.-Q.; Li, Y.

10.1101/465781 — neuroscience — Posted on 2018-11-08

1948 Bile acid metabolites control Th17 and Treg cell differentiation

Hang, S.; Paik, D.; Devlin, S.; Jamma, T.; Lu, J.; Ha, S.; Nelson, B.; Kelly, S.; Wu, L.; Zheng, Y.; Rastinejad, F.; Krout, M.; Fischbach, M.; Littman, D.; Huh, J.

10.1101/465344 — immunology — Posted on 2018-11-08

1949 The concerted action of E2-2 and HEB is critical for early lymphoid specification

Bouderlique, T.; Pena Perez, L.; Kharazi, S.; Hils, M.; Li, X.; Krstic, A.; de Paepe, A.; Schachtrup, C.; Gustafsson, C.; Holmberg, D.; Schachtrup, K.; Mansson, R.

10.1101/465765 — immunology — Posted on 2018-11-08

1950 Expanding the CITE-seq tool-kit: Detection of proteins, transcriptomes, clonotypes and CRISPR perturbations with multiplexing, in a single assay

Mimitou, E.; Cheng, A.; Montalbano, A.; Hao, S.; Stoeckius, M.; Legut, M.; Roush, T.; Herrera, A.; Papalexi, E.; Ouyang, Z.; Satija, R.; Sanjana, N.; Koralov, S.; Smibert, P.

10.1101/466466 — genomics — Posted on 2018-11-08

1951 Genetic predisposition to hypouricemia on whole-exome sequencing analysis and its utilities in primary screening purposes

Cha, D. H.; Gee, H. Y.; Cachau, R.; Choi, J. M.; Park, D.; Jee, S. H.; Ryu, S.; Kim, K. K.; Winkler, C. A.; Cho, S. K.

10.1101/459727 — genetics — Posted on 2018-11-08

1952 Telomere length, arsenic exposure and risk of basal cell carcinoma of skin

Srinivas, N.; Rachakonda, S.; Hielscher, T.; Calderazzo, S.; Rudnai, P.; Gurzau, E.; Koppova, K.; Fletcher, T.; Kumar, R.

10.1101/465732 — genetics — Posted on 2018-11-08

1953 A missense mutation of Ip3r1 in Dp2 mice leads to short-term mydriasis and unfolded protein response in the iris constrictor muscles

Chen, B.; Qi, C.; Chen, L.; dai, M.; Miao, Y.; Chen, R.; Wei, W.; Yang, S.; Wang, H.; Duan, X.; Gong, M.; Wang, Y.; Xue, Z.

10.1101/465591 — genetics — Posted on 2018-11-08

1954 Long-distance dispersal, ice sheet dynamics, and mountaintop isolation underlie the genetic structure of glacier ice worms

Hotaling, S.; Shain, D. H.; Lang, S. A.; Bagley, R. K.; M., L.; Weisrock, D. W.; Kelley, J. L.

10.1101/463521 — evolutionary biology — Posted on 2018-11-08

1955 Evolution of ovipositor length in Drosophila suzukii is driven by enhanced cell size expansion and anisotropic tissue reorganization

Green, J. E.; Cavey, M.; Caturegli, E.; Gompel, N.; Prud'homme, B.

10.1101/466375 — evolutionary biology — Posted on 2018-11-08

1956 Complex stopover and migratory behavior revealed using mechanistic movement models with environmentally driven dynamic parameters

Eisaguirre, J.; Auger-Methe, M.; Barger, C.; Lewis, S.; McIntyre, C.; Booms, T.; Breed, G.

10.1101/465427 — ecology — Posted on 2018-11-08

1957 Improved spatial ecological sampling using open data and standardization: an example from malaria mosquito surveillance

Sedda, L.; Lucas, E. R.; Djogbenou, L. S.; Edi, A. V. C.; Egyr-Yawson, A.; Kabula, B. L.; Midega, J.; Ochomo, E.; Weetman, D.; Donnelly, M. J.

10.1101/465963 — ecology — Posted on 2018-11-08

1958 Enhanced cell-cell contact stability upon Fibroblast Growth factor Receptor/N-cadherin cross-talk

Nguyen, T.; Duchesne, L.; Bogetto, N.; Fernig, D.; Murade, C.; Ladoux, B.; Mege, R.-M.

10.1101/465930 — cell biology — Posted on 2018-11-08

1959 LeafCutter vs. MAJIQ and comparing software in the fast-moving field of genomics

Vaquero-Garcia, J.; Norton, S.; Barash, Y.

10.1101/463927 — bioinformatics — Posted on 2018-11-08

1960 duphold: scalalable, depth-based annotation and curation of high-confidence structural variant calls.

Pedersen, B. S.; Quinlan, A. R.

10.1101/465385 — bioinformatics — Posted on 2018-11-08

1961 TriPepSVM - de novo prediction of RNA-binding proteins based on short amino acid motifs

Bressin, A.; Schulte-Sasse, R.; Figini, D.; Urdaneta, E. C.; Beckmann, B. M.; Marsico, A.

10.1101/466151 — bioinformatics — Posted on 2018-11-08

1962 Ancestry-agnostic estimation of DNA sample contamination from sequence reads

Zhang, F.; Flickinger, M.; InPSYght Psychiatric Genetics Consortium, ; Abecasis, G.; Boehnke, M.; Kang, H. M.

10.1101/466268 — bioinformatics — Posted on 2018-11-08

1963 Cis-regulatory code for predicting plant cell-type specific high salinity response

Uygun, S.; Azodi, C. B.; Shiu, S.-H.

10.1101/466326 — plant biology — Posted on 2018-11-08

1964 Rapid Brain Responses to Familiar vs. Unfamiliar Music - an EEG and Pupillometry study

Jagiello, R.; Pomper, U.; Yoneya, M.; Zhao, S.; Chait, M.

10.1101/466359 — neuroscience — Posted on 2018-11-08

1965 Phasic norepinephrine is a neural interrupt signal for unexpected events in rapidly unfolding sensory sequences - evidence from pupillometry

Zhao, S.; Chait, M.; Dick, F.; Dayan, P.; Furukawa, S.; Liao, H.-I.

10.1101/466367 — neuroscience — Posted on 2018-11-08

1966 The Human Hippocampus Contributes to Egocentric Coding of Distance to a Local Landmark

Chen, X.; Vieweg, P.; Wolbers, T.

10.1101/465997 — neuroscience — Posted on 2018-11-08

1967 Oxytocin effects on the resting-state mentalizing brain network

Wu, H.; Feng, C.; Lu, X.; Liu, X.; Liu, Q.

10.1101/465658 — neuroscience — Posted on 2018-11-08

1968 Electroporation characteristics of human primary T cells

Aksoy, P.; Aksoy, B. A.; Czech, E.; Hammerbacher, J.

10.1101/466243 — immunology — Posted on 2018-11-08

1969 Transcriptional regulatory networks that promote and restrict identities and functions of intestinal innate lymphoid cells

Pokrovskii, M.; Hall, J. A.; Ochayon, D. E.; Yi, R.; Chaimowitz, N. S.; Seelamneni, H.; Carriero, N.; Watters, A.; Waggoner, S. N.; Littman, D. R.; Bonneau, R.; Miraldi, E. R.

10.1101/465435 — immunology — Posted on 2018-11-08

1970 Deep Phenotyping Enhances Somatic Mutant Detection and Mosaic Pattern Recognition in the Zebrafish Skeleton

Watson, C. J.; Monstad-Rios, A. T.; Bhimani, R. M.; Gistelinck, C.; Willaert, A.; Coucke, P. J.; Hsu, Y.-H.; Kwon, R. Y.

10.1101/466185 — genetics — Posted on 2018-11-08

1971 Punctuated evolution of myxoma virus: rapid and disjunct evolution of a recent viral lineage in Australia

Kerr, P. J.; Eden, J.-S.; Di Giallonardo, F.; Peacock, D.; Liu, J.; Strive, T.; Read, A. F.; Holmes, E. C.

10.1101/465583 — evolutionary biology — Posted on 2018-11-08

1972 Genomic architecture and introgression shape a butterfly radiation

10.1101/466292 — evolutionary biology — Posted on 2018-11-08

1973 Dams have varying impacts on fish communities across latitudes: A quantitative synthesis

Turgeon, K.; Turpin, C.; Gregory-Eaves, I.

10.1101/461145 — ecology — Posted on 2018-11-08

1974 Consensus sequence design as a general strategy to create hyperstable, biologically active proteins

Sternke, M.; Tripp, K. W.; Barrick, D.

10.1101/466391 — biophysics — Posted on 2018-11-08

1975 OrthoFinder2: fast and accurate phylogenomic orthology analysis from gene sequences

Emms, D. M.; Kelly, S.

10.1101/466201 — bioinformatics — Posted on 2018-11-08

1976 Accurate loop calling for 3D genomic data with cLoops

Cao, Y.; Chen, X.; Ai, D.; Chen, Z.; Chen, G.; McDermott, J.; Huang, Y.; Han, J.-D. J.

10.1101/465849 — bioinformatics — Posted on 2018-11-08

1977 GenGraph: a python module for the simple generation and manipulation of genome graphs.

Ambler, J. M.; Mulder, N.; Mulaudzi, S.

10.1101/465831 — bioinformatics — Posted on 2018-11-08

1978 Murine bone properties and their relationship to gait during growth

Song, H.; Polk, J. D.; Kersh, M. E.

10.1101/465948 — bioengineering — Posted on 2018-11-08

1979 Does women’s interpersonal anxiety track changes in steroid hormone levels?

Hahn, A. C.; DeBruine, L. M.; Pesce, L. A.; Diaz, A.; Jones, B. C.

10.1101/456319 — animal behavior and cognition — Posted on 2018-11-08

1980 BIN1 recovers tauopathy-induced long-term memory deficits in mice and interacts with Tau through Thr348 phosphorylation

Sartori, M.; Mendes, T.; Desai, S.; Lasorsa, A.; Herldean, A.; Malmanche, N.; Makinen, P.; Marttinen, M.; Malki, I.; Chapuis, J.; Flaig, A.; Vreulx, A.-C.; Amouyel, P.; Leroux, F.; Deprez, B.; Cantrelle, F.-X.; Marechal, D.; Pradier, L.; Hiltunen, M.; Landrieu, I.; Kilinc, D.; Herault, Y.; Laporte, J.; Lambert, J.-C.

10.1101/462317 — neuroscience — Posted on 2018-11-08

1981 Action in auctions: neural and computational mechanisms of bidding behavior

Martinez-Saito, M.; Konovalov, R.; Piradov, M.; Shestakova, A.; Gutkin, B.; Klucharev, V.

10.1101/464925 — neuroscience — Posted on 2018-11-08

1982 A chemogenetic approach for optical monitoring of voltage in neurons

Sundukova, M.; Prifti, E.; Bucci, A.; Kirillova, K.; Serrao, J.; Reymond, L.; Umebayashi, M.; Hovius, R.; Riezman, H.; Johnsson, K.; Heppenstall, P. A.

10.1101/463109 — neuroscience — Posted on 2018-11-08

1983 A Two-Player Iterated Survival Game

Wakeley, J.; Nowak, M.

10.1101/465294 — evolutionary biology — Posted on 2018-11-08

1984 Cultural Selection Shapes Network Structure

Smolla, M.; Akcay, E.

10.1101/464883 — evolutionary biology — Posted on 2018-11-08

1985 A structure-based approach towards identification of inhibitory fragments for eleven-nineteen-leukemia protein (ENL) YEATS domain

Heidenreich, D.; Moustakim, M.; Schmidt, J.; Merk, D.; Brennan, P. E.; Fedorov, O.; Chaikuad, A.; Knapp, S.

10.1101/466284 — biochemistry — Posted on 2018-11-08

1986 Improving recovery of member genomes from enrichment reactor microbial communities using MinION--based long read metagenomics

Arumugam, K.; Bessarab, I.; Liu, X.; Natarajan, G.; Drautz-Moses, D. I.; Wuertz, S.; Lauro, F. M.; Law, Y. Y.; Huson, D. H.; Williams, R. B.

10.1101/465328 — genomics — Posted on 2018-11-08

1987 Efficient GFP-labeling and analysis of spermatogenic cells using the IRG transgene and flow cytometry

Zagore, L. L.; Akesson, C. C.; Licatalosi, D. D.

10.1101/465286 — developmental biology — Posted on 2018-11-08

1988 Pseudo-Symmetry and Conformational Plasticity in 7 Transmembrane Helix (7TMH) Proteins: Intragenic Duplication and Assembly of 3TMH or 4TMH Protodomains with Evolutionary Balance of Structural Constraints and Functional Divergence

Youkharibache, P.; Tran, A.; Abrol, R.

10.1101/465302 — bioinformatics — Posted on 2018-11-08

1989 Haplotype-resolved and integrated genome analysis of the cancer cell line HepG2

Zhou, B.; Ho, S. S.; Greer, S. U.; Spies, N.; Bell, J. M.; Zhang, X.; Zhu, X.; Arthur, J. G.; Byeon, S.; Pattni, R.; Saha, I.; Huang, Y.; Song, G.; Ji, H. P.; Perrin, D.; Wong, W. H.; Abyzov, A.; Urban, A. E.

10.1101/378497 — genomics — Posted on 2018-11-08

1990 The landscape of viral associations in human cancers

Zapatka, M.; Borozan, I.; Brewer, D. S.; Iskar, M.; Grundhoff, A.; Alawi, M.; Desai, N.; Cooper, C. S.; Eils, R.; Ferretti, V.; Lichter, P.; PCAWG Pathogens Working Group, ; ICGC/TCGA Pan-Cancer Analysis of Whole Genomes Network,

10.1101/465757 — cancer biology — Posted on 2018-11-08

1991 The Portal Project: a long-term study of a Chihuahuan desert ecosystem

Ernest, S. M.; Yenni, G. M.; Allington, G.; Bledsoe, E.; Christensen, E.; Diaz, R.; Geluso, K.; Goheen, J.; Guo, Q.; Heske, E.; Kelt, D.; Meiners, J.; Munger, J.; Restrepo, C.; Samson, D.; Schutzenhofer, M.; Skupski, M.; Supp, S.; Thibault, K.; Taylor, S.; White, E.; Davidson, D.; Brown, J. H.; Valone, T. J.

10.1101/332783 — ecology — Posted on 2018-11-08

1992 The innate immune DNA sensor cGAS is a negative regulator of DNA repair hence promotes genome instability and cell death

Jiang, H.; Panda, S.; Xue, X.; Liang, F.; Sung, P.; Gekara, N. O.

10.1101/465401 — cell biology — Posted on 2018-11-08

1993 Protein synthesis rates and ribosome occupancies reveal determinants of translation elongation rates

Riba, A.; Di Nanni, N.; Mittal, N.; Arhne, E.; Schmidt, A.; Zavolan, M.

10.1101/465914 — biophysics — Posted on 2018-11-08

1994 Inferring the direction of rhythmic neural transmission via inter-regional phase-amplitude coupling (ir-PAC)

Nandi, B.; Swiatek, P.; Kocsis, B.; Ding, M.

10.1101/465484 — neuroscience — Posted on 2018-11-08

1995 Single cell transcriptomes reveal characteristics of miRNA in gene expression noise reduction

Hu, T.; Wei, L.; Li, S.; Cheng, T.; Zhang, X.; Wang, X.

10.1101/465518 — bioinformatics — Posted on 2018-11-08

1996 New players in the regulatory network of Vibrio parahaemolyticus type VI secretion system 1

Ben-Yaakov, R.; Salomon, D.

10.1101/464727 — microbiology — Posted on 2018-11-08

1997 Field evidence for manipulation of mosquito host selection by the human malaria parasite, Plasmodium falciparum

Vantaux, A.; Yao, F.; Hien, D. F.; Guissou, E.; Yameogo, B. K.; Gouagna, L.-C.; Fontenille, D.; Renaud, F.; Simard, F.; Constantini, C.; Thomas, F.; Mouline, K.; Roche, B.; Cohuet, A.; Dabire, K. R.; Lefevre, T.

10.1101/207183 — evolutionary biology — Posted on 2018-11-08

1998 GLaMST: Grow Lineages along Minimum Spanning Tree for B Cell Receptor Sequencing Data

Yang, X.; Tipton, C.; Woodruff, M.; Zhou, E.; Lee, F. E.-H.; Sanz, I.; Qiu, P.

10.1101/465476 — bioinformatics — Posted on 2018-11-08

1999 A New Method for Primary Culture of Mouse Dorsal Root Ganglion Neurons

Li, S.; Dong, T.

10.1101/466110 — neuroscience — Posted on 2018-11-08

2000 A stable, high refractive index, switching buffer for super-resolution imaging

Hartwich, T. M.; Chung, K. K.; Schroeder, L.; Bewersdorf, J.; Soeller, C.; Baddeley, D.

10.1101/465492 — biophysics — Posted on 2018-11-08

2001 Susceptibility of Spotted Doves (Streptopelia chinensis) to Experimental Infection with the SFTS Phlebovirus

Li, Z.; Bao, C.; Hu, J.; Gao, C.; Zhang, N.; Huo, X.; Cardona, C. J.; Xing, Z.

10.1101/466094 — microbiology — Posted on 2018-11-08

2002 Architectural traits constrain the evolution of unisexual flowers and sexual segregation within inflorescences: an interspecific approach

Torices, R.; Afonso, A.; Anderberg, A. A.; Gomez, J. M.; Mendez, M.

10.1101/356147 — evolutionary biology — Posted on 2018-11-08

2003 Multimerization of Homo sapiens TRPA1 ion channel cytoplasmic domains

Martinez, G. Q.; Gordon, S. E.

10.1101/466060 — biochemistry — Posted on 2018-11-08

2004 Cognitive functions and jugular venous reflux in severe mitral regurgitation

Sung, S.-H.; Lee, C.-W.; Wang, P.-N.; Lee, H.-Y.; Chen, C.-H.; Chung, C.-P.

10.1101/466037 — neuroscience — Posted on 2018-11-08

2005 Multi-modal Latent Factor Exploration of Atrophy, Cognitive and Tau Heterogeneity in Typical Late-Onset Alzheimer’s Disease

Sun, N.; Mormino, E. C.; Chen, J.; Sabuncu, M. R.; Yeo, B. T. T.

10.1101/462143 — neuroscience — Posted on 2018-11-08

2006 BMN 250, a fusion of lysosomal alpha-N-acetylglucosaminidase with IGF2, exhibits different patterns of cellular uptake into critical cell types of Sanfilippo syndrome B disease pathogenesis.

Yogalingam, G.; Luu, A.; Prill, H.; Lo, M.; Yip, B.; Holtzinger, J.; Christianson, T.; Aoyagi-Scharber, M.; Lawrence, R.; Crawford, B.; LeBowitz, J.

10.1101/466078 — genetics — Posted on 2018-11-08

2007 Heterogeneity of Incipient Atrophy Patterns in Parkinsons Disease

Maia, P. D.; Pandya, S.; Torok, J.; Gupta, A.; Zeighami, Y.; Raj, A.

10.1101/466086 — neuroscience — Posted on 2018-11-08

2008 TIM-1 SERVES AS A NONREDUNDANT RECEPTOR FOR EBOLA VIRUS, ENHANCING VIREMIA AND PATHOGENESIS

Brunton, B.; Rogers, K.; Phillips, E. K.; Brouillette, R. B.; Bouls, R.; Butler, N. S.; Maury, W.

10.1101/466102 — microbiology — Posted on 2018-11-08

2009 Diversification in the microlepidopteran genus Mompha (Lepidoptera: Gelechioidea: Momphidae) is explained more by tissue specificity than host plant family.

Bruzzese, D. J.; Wagner, D. L.; Harrison, T.; Jogesh, T.; Overson, R. P.; Wickett, N. J.; Raguso, R. A.; Skogen, K. A.

10.1101/466052 — evolutionary biology — Posted on 2018-11-08

2010 Abundance drives broad patterns of generalisation in plant-hummingbird pollination networks

Simmons, B. I.; Vizentin-Bugoni, J.; Maruyama, P. K.; Cotton, P. A.; Marin-Gomez, O. H.; Lara, C.; Lasprilla, L. R.; Maglianesi, M. A.; Ortiz-Pulido, R.; Rocca, M. A.; Rodrigues, L. C.; Tinoco, B.; Vasconcelos, M. F.; Sazima, M.; Martin Gonzalez, A. M.; Sonne, J.; Rahbek, C.; Dicks, L. V.; Dalsgaard, B.; Sutherland, W. J.

10.1101/339762 — ecology — Posted on 2018-11-08

2011 Homeostatic Controllers Compensating for Growth and Perturbations

Ruoff, P.; Agafonov, O.; Tveit, D. M.; Thorsen, K.; Drengstig, T.

10.1101/466029 — biophysics — Posted on 2018-11-08

2012 First Report of Recurrent Genomic Selection with Real Data in Popcorn and Genetic Gain Increases

Schwantes, I. A.; Teixeira do Amaral Junior, A.; Eustaquio de Almeida Filho, J.; Vivas, M.; Silva Cabral, P. D.; Goncalves Guimaraes, A.; Lima e Silva, F. H. d.; Araujo Diniz Santos, P. H.; Gonzaga Pereira, M.; Pio Viana, A.; Ferreira Pena, G.; Alves Ferreira, F. R.

10.1101/466003 — plant biology — Posted on 2018-11-08

2013 Evidence of a noncoding transcript of the RIPK2 gene overexpressed in head and neck tumor

Tajara, E. H.; Villagra, U. M.; da Cunha, B. R.; Polachini, G. M.; Henrique, T.; da Silva, C. H. T. P.; Feitosa, O. A.; Erica E. Fukuyama, E. E.; Lopez, R. V. M.; Dias-Neto, E.; Nunes, F. D.; Severino, P.

10.1101/466011 — molecular biology — Posted on 2018-11-08

2014 Evaluating DNA methylation age on the Illuminas methylationEPIC BeadChip

Dhingra, R.; Kwee, L. C.; Diaz-Sanchez, D.; Devlin, R. B.; Cascio, W.; Hauser, E. R.; Gregory, S.; Shah, S.; Kraus, W.; Olden, K.; Ward-Caviness, C.

10.1101/466045 — bioinformatics — Posted on 2018-11-08

2015 Particulate Matter fractions and kitchen characteristics in Sri Lankan households using solid fuel and LPG

Nandasena, S.; Wickramasinghe, R.; Kasturiratne, A.; Wimalasir, U.; Tipre, M.; Larson, R.; Levitan, E.; Sathiakumar, N.

10.1101/461665 — epidemiology — Posted on 2018-11-08

2016 The development of individual differences in cooperative behaviour: maternal glucocorticoid hormones alter helping behaviour of offspring in wild meerkats

Dantzer, B.; Dubuc, C.; Braga Goncalves, I.; Cram, D. L.; Bennett, N. C.; Ganswindt, A.; Heistermann, M.; Duncan, C.; Gaynor, D.; Clutton-Brock, T. H.

10.1101/316182 — animal behavior and cognition — Posted on 2018-11-08

2017 Dynamic modelling of hepatitis C transmission among people who inject drugs: A tool to support WHO elimination targets

Stocks, T. J. S.; Martin, L. J.; Kühlmann-Berenzon, S.; Britton, T.

10.1101/460550 — epidemiology — Posted on 2018-11-08

2018 Prenatal exposure to household air pollution and adverse birth outcomes among newborns in Sri Lanka

Tipre, M.; Wickremesinghe, R.; Nandasena, S.; Kasturiratne, A.; Larson, R.; Meleth, S.; Wimalasiri, U.; Smith, T.; Lungu, C.; Sathiakumar, N.

10.1101/461632 — epidemiology — Posted on 2018-11-08

2019 Experimental loss of generalist plants reveals alterations in plant-pollinator interactions and a constrained flexibility of foraging

Biella, P.; Akter, A.; Ollerton, J.; Tarrant, S.; Janecek, S.; Jersakova, J.; Klecka, J.

10.1101/279430 — ecology — Posted on 2018-11-08

2020 Patient reported distress can aid clinical decision making in idiopathic pulmonary fibrosis: analysis of the PROFILE cohort

Stewart, I.; McKeever, T.; Braybrooke, R.; Oballa, E.; Simpson, J. K.; Maher, T. M.; Marshall, R. P.; Lukey, P. T.; Fahy, W. A.; Jenkins, G.; Saini, G.

10.1101/460626 — clinical trials — Posted on 2018-11-08

2021 BldC delays entry into development to produce a sustained period of vegetative growth in Streptomyces venezuelae

Bush, M. J.; Chandra, G.; Al-Bassam, M.; Findlay, K.; Buttner, M.

10.1101/194126 — microbiology — Posted on 2018-11-08

2022 Holobiont Evolution: Model for Vertical vs. Horizontal Microbial Colonization

Roughgarden, J.

10.1101/465310 — evolutionary biology — Posted on 2018-11-08

2023 A new mechanism for ribosome rescue can recruit RF1 or RF2 to non-stop ribosomes

Goralski, T. D.; Kirimanjeswara, G. S.; Keiler, K. C.

10.1101/465609 — microbiology — Posted on 2018-11-08

2024 The specificity of ParR binding determines the compatibility of conjugative plasmids in Clostridium perfringens

Watts, T. D.; Traore, D. A. K.; Atkinson, S. C.; Lao, C.; Caltabiano, N.; Rood, J. I.; Adams, V.

10.1101/462192 — microbiology — Posted on 2018-11-08

2025 Higher-order thalamic circuits channel parallel streams of visual information in mice

Bennett, C.; Gale, S. D.; Garrett, M. E.; Newton, M. L.; Callaway, E. M.; Murphy, G. J.; Olsen, S. R.

10.1101/395244 — neuroscience — Posted on 2018-11-07

2026 Fitness benefits of loss of heterozygosity in Saccharomyces hybrids

Lancaster, S. M.; Payen, C.; Smukowski Heil, C.; Dunham, M. J.

10.1101/452748 — genetics — Posted on 2018-11-07

2027 Automatic vegetation identification in Google Earth images using a convolutional neural network: A case study for Japanese bamboo forests

Watanabe, S.; Sumi, K.; Ise, T.

10.1101/351643 — ecology — Posted on 2018-11-07

2028 Unsupervised deep learning with variational autoencoders applied to breast tumor genome-wide DNA methylation data with biologic feature extraction

Titus, A. J.; Wilkins, O. M.; Bobak, C. A.; Christensen, B. C.

10.1101/433763 — bioinformatics — Posted on 2018-11-07

2029 Exponentially-decaying temporal integration in a network model can explain much of the neural sensitivity to stimulus history in primary auditory cortex.

Rahman, M.; Willmore, B. D. B.; King, A. J.; Harper, N. S.

10.1101/465047 — neuroscience — Posted on 2018-11-07

2030 Mechanism and resistance for antimycobacterial activity of a fluoroquinophenoxazine compound

Garcia, P. K.; Annamalai, T.; Wang, W.; Bell, R. S.; Le, D.; Martin Pancorbo, P.; Sikandar, S.; Seddek, A.; Yu, X.; Sun, D.; Uhlemann, A.-C.; Tiwari, P. B.; Leng, F.; Tse-Dinh, Y.-C.

10.1101/464990 — microbiology — Posted on 2018-11-07

2031 Transposon insertional mutagenesis in Saccharomyces uvarum reveals trans-acting effects influencing species dependent essential genes

Sanchez, M. R.; Payen, C.; Cheong, F.; Hovde, B. T.; Bissonnette, S.; Arkin, A. P.; Skerker, J. M.; Brem, R. B.; Caudy, A. A.; Dunham, M. J.

10.1101/218305 — genomics — Posted on 2018-11-07

2032 Physiological Synchrony Predicts Observational Threat Learning in Humans

Pärnamets, P.; Espinosa, L.; Olsson, A.

10.1101/454819 — neuroscience — Posted on 2018-11-07

2033 Assessing natural selection during range expansions: Insights from a spatially explicit ABC study

Kanitz, R.; Neuenschwander, S.; Goudet, J.

10.1101/391110 — evolutionary biology — Posted on 2018-11-07

2034 PGxO and PGxLOD: a reconciliation of pharmacogenomic knowledge of various provenances, enabling further comparison

Monnin, P.; Legrand, J.; Husson, G.; Ringot, P.; Tchechmedjiev, A.; Jonquet, C.; Napoli, A.; Coulet, A.

10.1101/390971 — bioinformatics — Posted on 2018-11-07

2035 IFNβ and TNFα cooperate to induce a STAT1-independent antiviral and immunoregulatory program via non-canonical STAT2 and IRF9 pathway

Mariani, M.; Dasmeh, P.; Fortin, A.; Caron, E.; Kalamujic, M.; Harrison, A. N.; Kasumba, D. M.; Cervantes-Ortiz, S.; Mukawera, E.; Serohijos, A. W. R.; Grandvaux, N.

10.1101/273623 — immunology — Posted on 2018-11-07

2036 Covalent Modification and Regulation of the Nuclear Receptor Nurr1 by a Dopamine Metabolite

Bruning, J. M.; Wang, Y.; Oltrabella, F.; Tian, B.; Kholodar, S. A.; Liu, H.; Bhattacharya, P.; Guo, S.; Holton, J. M.; Fletterick, R. J.; Jacobson, M. P.; England, P. M.

10.1101/368399 — biophysics — Posted on 2018-11-07

2037 An ensemble learning approach to auto-annotation for whole-brain C. elegans imaging

Wu, S.; Toyoshima, Y.; Jang, M. S.; Kanamori, M.; Teramoto, T.; Iwasaki, Y.; Ishihara, T.; Iino, Y.; Yoshida, R.

10.1101/180430 — bioinformatics — Posted on 2018-11-07

2038 Draft genome assembly and population genetics of an agricultural pollinator, the solitary alkali bee (Halictidae: Nomia melanderi)

Kapheim, K. M.; Pan, H.; Li, C.; Blatti, C.; Harpur, B. A.; Ioannidis, P.; Jones, B. M.; Kent, C. F.; Ruzzante, L.; Sloofman, L.; Stolle, E.; Waterhouse, R. M.; Zayed, A.; Zhang, G.; Wcislo, W. T.

10.1101/465351 — genomics — Posted on 2018-11-07

2039 Alpha oscillations and travelling waves: signatures of predictive coding?

Alamia, A.; Vanrullen, R.

10.1101/464933 — neuroscience — Posted on 2018-11-07

2040 Effect of the Crystal Size of Biogenic Hydroxyapatites on IR and Raman Spectra

Londono-Restrepo, S. M.; Zubieta-Otero, L. F.; Jeronimo-Cruz, R.; Mondragon-Sosa, M. A.; Rodriguez-Garcia, M. E.

10.1101/465146 — bioengineering — Posted on 2018-11-07

2041 Neuron-astrocyte metabolic coupling during neuronal stimulation protects against fatty acid toxicity

Ioannou, M. S.; Jackson, J.; Sheu, S.-H.; Chang, C.-L.; Weigel, A. V.; Liu, H.; Pasolli, H. A.; Xu, C. S.; Pang, S.; Hess, H. F.; Lippincott-Schwartz, J.; Liu, Z.

10.1101/465237 — neuroscience — Posted on 2018-11-07

2042 Statistical properties of the optimal sensitivity matrix for compressed sensing with nonlinear sensors

Qin, S.; Li, Q.; Tang, C.; Tu, Y.

10.1101/464875 — neuroscience — Posted on 2018-11-07

2043 Functional network dynamics in a neurodevelopmental disorder of known genetic origin

Hawkins, E.; Akarca, D.; Zhang, M.; Brkic, D.; Woolrich, M.; Baker, K.; Astle, D. E.

10.1101/463323 — neuroscience — Posted on 2018-11-07

2044 Occupancy patterns of 208 DNA-associated proteins in a single human cell type

Partridge, E. C.; Chhetri, S. B.; Prokop, J. W.; Ramaker, R. C.; Jansen, C. S.; Goh, S.-T.; Mackiewicz, M.; Newberry, K. M.; Brandsmeier, L. A.; Meadows, S. K.; Messer, C. L.; Hardigan, A. A.; Dean, E. C.; Jiang, S.; Savic, D.; Mortazavi, A.; Wold, B. J.; Myers, R. M.; Mendenhall, E. M.

10.1101/464800 — genomics — Posted on 2018-11-07

2045 De novo profiling of RNA viruses in Anopheles malaria vector mosquitoes from forest ecological zones in Senegal and Cambodia

Belda, E.; Nanfack Minkeu, F.; Eiglmeier, K.; Carissimo, G.; Holm, I.; Diallo, M.; Diallo, D.; Vantaux, A.; Kim, S.; Sharakhov, I. V.; Vernick, K. D.

10.1101/464719 — genomics — Posted on 2018-11-07

2046 Distribution maps of twenty-four Mediterranean and European ecologically and economically important forest tree species compiled from historical data collections

Wazen, N.; Garavaglia, V.; Picard, N.; Besacier, C.; Fady, B.

10.1101/464834 — ecology — Posted on 2018-11-07

2047 Propulsive design principles in a multi-jet siphonophore

Sutherland, K. R.; Colin, S. P.; Costello, J. H.; Gemmell, B. J.

10.1101/465245 — biophysics — Posted on 2018-11-07

2048 REM sleep: unique associations with behavior, corticosterone regulation and apoptotic pathways in chronic stress in mice

Nollet, M.; Hicks, H.; McCarthy, A. P.; Wu, H.; Moller-Levet, C. S.; Laing, E. E.; Malki, K.; Lawless, N.; Wafford, K. A.; Dijk, D.-J.; Winsky-Sommerer, R.

10.1101/460600 — neuroscience — Posted on 2018-11-07

2049 Roles for stress response and cell wall biosynthesis pathways in caspofungin tolerance in Cryptococcus neoformans

Pianalto, K. M.; Billmyre, R. B.; Telzrow, C. L.; Alspaugh, J. A.

10.1101/465260 — genetics — Posted on 2018-11-07

2050 Strategies For Efficient Genome Editing Using CRISPR-Cas9

Meyer, B. J.; Farboud, B.; Severson, A.

10.1101/465252 — genetics — Posted on 2018-11-07

2051 Predicting The Spatial Dynamics Of Wolbachia Infections In Aedes aegypti Arbovirus Vector Populations In Heterogeneous Landscapes

Hancock, P. A.; Ritchie, S. A.; Koenraadt, C. J.; Scott, T. W.; Hoffmann, A. A.; Godfray, H. C. J.

10.1101/458794 — ecology — Posted on 2018-11-07

2052 Inference of clonal selection in cancer populations using single-cell sequencing data

Tsivina, V.; Zelikovsky, A.; Skums, P.

10.1101/465211 — bioinformatics — Posted on 2018-11-07

2053 Sensorimotor memory for object weight is based on previous experience during lifting, not holding

van Polanen, V.; Davare, M.

10.1101/464693 — neuroscience — Posted on 2018-11-07

2054 Optogenetic activation of SST-positive interneurons restores hippocampal theta oscillation impairment induced by soluble amyloid beta oligomers in vivo

Chung, H.; Park, K.; Jang, H. J.; Kohl, M. M.; Kwag, J.

10.1101/465112 — neuroscience — Posted on 2018-11-07

2055 BIN1 recovers tauopathy-induced long-term memory deficits in mice and interacts with Tau through Thr348 phosphorylation

10.1101/462317 — neuroscience — Posted on 2018-11-07

2056 Anterior insular cortex plays a critical role in interoceptive attention

Wang, X.; Wu, Q.; Egan, L.; Gu, X.; Liu, P.; Yang, Y.; Gu, H.; Luo, J.; Wu, Y.; Gao, Z.; Fan, J.

10.1101/464867 — neuroscience — Posted on 2018-11-07

2057 Neuroimaging supports the representational nature of the earliest human engravings

Mellet, E.; Salagnon, M.; Majkic, A.; Cremona, S.; Joliot, M.; Jobard, G.; Mazoyer, B.; Tzourio-Mazoyer, N.; d'Errico, F.

10.1101/464784 — neuroscience — Posted on 2018-11-07

2058 SETMAR functions in illegitimate DNA recombination and non-homologous end joining

Tellier, M.; Chalmers, R.

10.1101/465138 — molecular biology — Posted on 2018-11-07

2059 Unraveling the layers of cryptic genetic variation in a yeast gene regulatory network

Ehrenreich, I. M.; Lee, J. T.; Coradini, A. L. V.; Shen, A.

10.1101/465278 — genetics — Posted on 2018-11-07

2060 Plastic multicellular development of Myxococcus xanthus: genotype-environment interactions in a physical gradient

Rivera-Yoshida, N.; Arzola, A. V.; Arias Del Angel, J. A.; Franci, A.; Travisano, M.; Escalante, A. E.; Benitez, M.

10.1101/465203 — developmental biology — Posted on 2018-11-07

2061 Unlocking HDR-mediated Nucleotide Editing by identifying high-efficiency target sites using machine learning

O'Brien, A. R.; Wilson, L. O.; Burgio, G.; Bauer, D. C.

10.1101/464610 — bioinformatics — Posted on 2018-11-07

2062 Probiotic Associated Therapeutic Curli Hybrids (PATCH)

Praveschotinunt, P.; Duraj-Thatte, A. M.; Gelfat, I.; Bahl, F.; Chou, D. B.; Joshi, N. S.

10.1101/464966 — bioengineering — Posted on 2018-11-07

2063 Stress activity is not predictive of coping style in North American red squirrels

Westrick, S. E.; van Kesteren, F.; Palme, R.; Boonstra, R.; Boutin, S.; McAdam, A.; Dantzer, B.

10.1101/465187 — animal behavior and cognition — Posted on 2018-11-07

2064 Mitochondrial Uncoupling Protein 2 Knockout Promotes Mitophagy to Prevent Retinal Ganglion Cell Death in Glaucoma

Hass, D. T.; Barnstable, C. J.

10.1101/465153 — neuroscience — Posted on 2018-11-07

2065 Concurrent EEG- and fMRI-derived functional connectomes exhibit linked dynamics

Wirsich, J.; Giraud, A.-L.; Sadaghiani, S.

10.1101/464438 — neuroscience — Posted on 2018-11-07

2066 Action in auctions: neural and computational mechanisms of bidding behavior

Martinez-Saito, M.; Konovalov, R.; Piradov, M.; Shestakova, A.; Gutkin, B.; Klucharev, V.

10.1101/464925 — neuroscience — Posted on 2018-11-07

2067 Inferring B cell specificity for vaccines using a mixture model

Fowler, A.; Galson, J. D.; Trück, J.; Kelly, D. F.; Lunter, G.

10.1101/464792 — genomics — Posted on 2018-11-07

2068 Exome sequencing identifies high impact trait-associated alleles enriched in Finns

Locke, A. E.; Meltz Steinberg, K.; Chiang, C. W.; Service, S.; Havulinna, A.; Stell, L.; Pirinen, M.; Abel, H. J.; Chiang, C.; Fulton, R. S.; Jackson, A. U.; Kang, C. J.; Kanchi, K.; Koboldt, D. C.; Larson, D.; Nelson, J.; Nicholas, T. J.; Pietila, A.; Ramensky, V.; Ray, D.; Scott, L. J.; Stringham, H. M.; Vangipurapu, J.; Welch, R.; Yajnik, P.; Yin, X.; Eriksson, J.; Ala-Korpela, M.; Jarvelin, M.-R.; Manniko, M.; Laivouri, H.; Dutcher, S. K.; Stitziel, N. O.; Hall, I. M.; Wilson, R. K.; Sabatti, C.; Palotie, A.; Salomaa, V.; Laakso, M.; Ripatti, S.; Boehnke, M.; Freimer, N. B.

10.1101/464255 — genomics — Posted on 2018-11-07

2069 A genome-wide algal mutant library reveals a global view of genes required for eukaryotic photosynthesis

Li, X.; Patena, W.; Fauser, F.; Jinkerson, R. E.; Saroussi, S.; Meyer, M. T.; Ivanova, N.; Robertson, J. M.; Yue, R.; Zhang, R.; Vilarrasa-Blasi, J.; Wittkopp, T. M.; Ramundo, S.; Blum, S. R.; Goh, A.; Laudon, M.; Srikumar, T.; Lefebvre, P. A.; Grossman, A. R.; Jonikas, M. C.

10.1101/464859 — genomics — Posted on 2018-11-07

2070 Detection of rare disease-related genetic variants using the birthday model

Berstein, Y.; McCarthy, S. E.; Kramer, M.; McCombie, W. R.

10.1101/464842 — bioinformatics — Posted on 2018-11-07

2071 Spatiotemporal proteomics uncovers cathepsin-dependent host cell death during bacterial infection

Selkrig, J.; Li, N.; Bobonis, J.; Hausmann, A.; Sueki, A.; Imamura, H.; El Debs, B.; Sigismondo, G.; Florea, B.; Overkleeft, H.; Beltrao, P.; Hardt, W.-D.; Krijgsveld, J.; Typas, A.

10.1101/455048 — systems biology — Posted on 2018-11-07

2072 Distinct dimensions of emotion in the human brain and their representation on the cortical surface

Koide-Majima, N.; Nakai, T.; Nishimoto, S.

10.1101/464636 — neuroscience — Posted on 2018-11-07

2073 Familiarity facilitates detection of angry expressions

Chauhan, V.; Visconti di Oleggio Castello, M.; Taylor, M.; Gobbini, M. I.

10.1101/458984 — neuroscience — Posted on 2018-11-07

2074 L-type voltage-gated calcium channel regulation of in vitro human cortical neuronal networks

Plumbly, W.; Brandon, N. J.; Deeb, T. Z.; Hall, J.; Harwood, A. J.

10.1101/464677 — neuroscience — Posted on 2018-11-07

2075 Evaluation of colorectal cancer subtypes and cell lines using deep learning

Ronen, J.; Hayat, S.; Akalin, A.

10.1101/464743 — bioinformatics — Posted on 2018-11-07

2076 GSAP modulates γ-secretase specificity by inducing conformational change in PS1

Wong, E.; Liao, G. P.; Chang, J.; Xu, P.; Li, Y.-M.; Greengard, P.

10.1101/461061 — neuroscience — Posted on 2018-11-07

2077 Genetic dissection of Nodal and Bmp signalling requirements during primordial germ cell development

Senft, A. D.; Bikoff, E. K.; Robertson, E. J.; Costello, I.

10.1101/464776 — developmental biology — Posted on 2018-11-07

2078 Wavelength-encoded laser particles for massively-multiplexed cell tagging

Martino, N.; Kwok, S. J. J.; Liapis, A. C.; Forward, S.; Jang, H.; Kim, H.-M.; Wu, S. J.; Wu, J.; Dannenberg, P. H.; Jang, S.-J.; Lee, Y.-H.; Yun, S.-H.

10.1101/465104 — biophysics — Posted on 2018-11-07

2079 A folded conformation of MukBEF and Cohesin

Buermann, F.; Lee, B.-G.; Than, T.; Sinn, L.; O'Reilly, F. J.; Yatskevich, S.; Rappsilber, J.; Hu, B.; Nasmyth, K.; Lowe, J.

10.1101/464701 — molecular biology — Posted on 2018-11-07

2080 Checkpoint adaptation in repair-deficient cells drives aneuploidy and resistance to genotoxic agents

Bender, K.; Vydzhak, O.; Klermund, J.; Busch, A.; Grimm, S.; Luke, B.

10.1101/464685 — cell biology — Posted on 2018-11-07

2081 Subtractive Interaction Proteomics Reveal a Network of Signaling Pathways Activated by an Oncogenic Transcription Factor in Acute Myeloid Leukemia

Guillen, N.; Wieske, M.; Otto, A.; Mian, A. A.; Rokicki, M.; Guy, C.; Alvares, C.; Hole, P.; Held, H.; Ottmann, O. G.; Becher, D.; Wilson, M.; Heesom, K.; Ruthardt, M.; Chiriches, C.

10.1101/464958 — cancer biology — Posted on 2018-11-07

2082 Prey’s traits mediate a neotropical toad diet

McElroy, M. T.; Donoso, D. A.

10.1101/464511 — ecology — Posted on 2018-11-07

2083 Transplantation of human pluripotent stem cells overexpressing insulin/ERRγ can efficiently decrease the HbA1c levels of type 2 diabetes patient (Case #2-A)

Wang, T.; Chen, X.; Cui, X.; Zhao, L.; Yang, Z.; Wang, X.; Zhang, B.; Fan, M.; Shi, X.; Li, R.; Fang, Q.; Diao, X.; Zhang, L.; Yang, G.; Meng, Y.; Fan, S.; Yang, G.; An, L.; Zhang, G.

10.1101/462127 — cell biology — Posted on 2018-11-07

2084 DeepNose: Using artificial neural networks to represent the space of odorants

Tran, N.; Kepple, D.; Shuvaev, S. A.; Koulakov, A. A.

10.1101/464735 — neuroscience — Posted on 2018-11-07

2085 Comparison of efficiency and specificity of CRISPR-associated (Cas) nucleases in plants: An expanded toolkit for precision genome engineering

Raitskin, O.; Schudoma, C.; West, A.; Patron, N. J.

10.1101/422766 — plant biology — Posted on 2018-11-07

2086 Epiretinal stimulation with local returns enhances selectivity at cellular resolution

Fan, V. H.; Grosberg, L. E.; Madugula, S. S.; Hottowy, P.; Dabrowski, W.; Sher, A.; Litke, A. M.; Chichilnisky, E. J.

10.1101/275958 — neuroscience — Posted on 2018-11-07

2087 Multisite phosphorylation regulates phenotypic variability in antibiotic tolerance

Libby, E.; Reuveni, S.; Dworkin, J.

10.1101/315085 — microbiology — Posted on 2018-11-07

2088 Science podcasts: analysis of global production and output from 2004 to 2018

MacKenzie, L. E.

10.1101/298356 — scientific communication and education — Posted on 2018-11-07

2089 Evidence of quantum consciousness in evoked zero-spin echoes

Kerskens, C.; Lopez Perez, D.

10.1101/219931 — neuroscience — Posted on 2018-11-07

2090 Characterizing the pathogenic, genomic, and chemical traits of Aspergillus fischeri, a close relative of the major human fungal pathogen Aspergillus fumigatus

Mead, M. E.; Knowles, S. L.; Raja, H. A.; Beattie, S. R.; Kowalski, C. H.; Steenwyk, J. L.; Silva, L. P.; Chiaratto, J.; Ries, L. N.; Goldman, G. H.; Cramer, R. A.; Oberlies, N. H.; Rokas, A.

10.1101/430728 — microbiology — Posted on 2018-11-07

2091 Dopaminergic medication reduces striatal sensitivity to negative outcomes in Parkinson’s disease

McCoy, B.; Jahfari, S.; Engels, G.; Knapen, T.; Theeuwes, J.

10.1101/445528 — neuroscience — Posted on 2018-11-07

2092 PETISCO is a novel protein complex required for 21U RNA biogenesis and embryonic viability

Cordeiro Rodrigues, R. J.; de Jesus Domingues, A. M.; Hellmann, S.; Dietz, S.; de Albuquerque, B.; Renz, C.; Ulrich, H. D.; Butter, F.; Ketting, R.

10.1101/463711 — molecular biology — Posted on 2018-11-07

2093 Functional anomaly mapping reveals local and distant dysfunction caused by brain lesions

DeMarco, A. T.; Turkeltaub, P. E.

10.1101/464248 — neuroscience — Posted on 2018-11-07

2094 Increased association between Epstein-Barr virus EBNA2 from type 2 strains and the transcriptional repressor BS69 restricts B cell growth

Ponnusamy, R.; Khatri, R.; Correia, P. B.; Mancini, E.; Farrell, P. J.; West, M. J.

10.1101/464131 — microbiology — Posted on 2018-11-07

2095 An Efficient, Scalable and Exact Representation of High-Dimensional Color Information Enabled via de Bruijn Graph Search

Almodaresi, F.; Pandey, P.; Ferdman, M.; Johnson, R.; Patro, R.

10.1101/464222 — bioinformatics — Posted on 2018-11-07

2096 Dendritic sodium spikes endow neurons with inverse firing rate response to correlated synaptic activity

Gorski, T.; Veltz, R.; Galtier, M.; Fragnaud, H.; Goldman, J. S.; Telenczuk, B.; Destexhe, A.

10.1101/137984 — neuroscience — Posted on 2018-11-07

2097 SIP: An Interchangeable Pipeline for scRNA-seq Data Processing

Chen, S.; Wei, Z.; Chen, Y.; Hua, K.; Zhang, W.; Liu, C.; Gao, H.; Sun, H.; Wang, Z.; Yin, Q.; Chen, S.; Song, S.; Feng, C.; Lu, H.; Jiang, R.; Wang, X.; Gu, J.; Zhang, X.

10.1101/456772 — bioinformatics — Posted on 2018-11-07

2098 Modular reconfiguration of an auditory-control brain network supports adaptive listening behavior

Alavash, M.; Tune, S.; Obleser, J.

10.1101/409797 — neuroscience — Posted on 2018-11-07

2099 The multi-speed genome of Fusarium oxysporum reveals association of histone modifications with sequence divergence and footprints of past horizontal chromosome transfer events

Fokkens, L.; Shahi, S.; Connolly, L. R.; Stam, R.; Schmidt, S. M.; Smith, K. M.; Freitag, M.; Rep, M.

10.1101/465070 — genomics — Posted on 2018-11-07

2100 Epiretinal stimulation with local returns enhances selectivity at cellular resolution

Fan, V. H.; Grosberg, L. E.; Madugula, S. S.; Hottowy, P.; Dabrowski, W.; Sher, A.; Litke, A. M.; Chichilnisky, E. J.

10.1101/275958 — neuroscience — Posted on 2018-11-07

2101 Mechanism and resistance for antimycobacterial activity of a fluoroquinophenoxazine compound

Tse-Dinh, Y.-C.; Garcia, P. K.; Annamalai, T.; Wang, W.; Bell, R. S.; Le, D.; Martin Pancorbo, P.; Sikandar, S.; Seddek, A.; Yu, X.; Sun, D.; Uhlemann, A.-C.; Tiwari, P. B.; Leng, F.

10.1101/464990 — microbiology — Posted on 2018-11-07

2102 Exponentially-decaying temporal integration in a network model can explain much of the neural sensitivity to stimulus history in primary auditory cortex.

Rahman, M.; Willmore, B. D. B.; King, A. J.; Harper, N. S.

10.1101/465047 — neuroscience — Posted on 2018-11-07

2103 A Reproducible Neurobiology of Depressive Rumination

Pisner, D.; Shumake, J.; Beevers, C.; Schnyer, D.

10.1101/365759 — neuroscience — Posted on 2018-11-07

2104 A Framework to Incorporate D-trace Loss into Compositional Data Analysis

He, S.; Deng, M.

10.1101/464982 — microbiology — Posted on 2018-11-07

2105 The NDV-3A vaccine protects mice from multidrug resistant Candida auris infection

Singh, S.; Uppuluri, P.; Alqarihi, A.; Elhassan, H.; French, S.; Lockhart, S. R.; CHiller, T.; Edwards, J. E.; Ibrahim, A. S.

10.1101/465096 — microbiology — Posted on 2018-11-07

2106 A metapopulation model for the 2018 Ebola outbreak in Equateur province in the Democratic Republic of the Congo

Meakin, S.; Tildesley, M.; Davis, E.; Keeling, M.

10.1101/465062 — epidemiology — Posted on 2018-11-07

2107 Rational Discovery of Dual-Action Multi-Target Kinase Inhibitor for Precision Anti-Cancer Therapy Using Structural Systems Pharmacology

Xie, L.; Lim, H.; He, D.; Qiu, Y.; Krawczuk, P.; Sun, X.

10.1101/465054 — systems biology — Posted on 2018-11-07

2108 \"Protein composition of the occlusion bodies of Epinotia aporema granulovirus\"

Romanowski, V.; Masson, T.; Fabre, M. L.; Pidre, M. L.; Ferrelli, M. L.

10.1101/465021 — microbiology — Posted on 2018-11-07

2109 High-throughput micro-patterning platform reveals Nodal-dependent dissection of peri-gastrulation-associated versus pre-neurulation associated fate patterning

Tewary, M.; Dziedzicka, D.; Ostblom, J.; Prochazka, L.; Shakiba, N.; Woodford, C.; Piccinini, E.; Vickers, A.; Louis, B.; Rahman, N.; Danovi, D.; Geens, M.; Watt, F. M.; Zandstra, P. W.

10.1101/465039 — developmental biology — Posted on 2018-11-07

2110 Ownership, Coverage, Utilisation and Maintenance of Long-lasting insecticidal nets (LLINs) in Bamenda, Santa and Tiko Health Districts in Cameroon

Cho, N. F.; Cho-Azieh, N. F. P.; Fri, M. S.; Cho, M. B.; Jokwi, K. P.; Tassang, N. F. C.; Fon, N. P.; N Tassang, T. A.

10.1101/465005 — epidemiology — Posted on 2018-11-07

2111 Nonlinear processing of shape information in rat lateral extrastriate cortex

Matteucci, G.; Bellacosa Marotti, R.; Riggi, M.; Rosselli, F. B.; Zoccolan, D.

10.1101/341792 — neuroscience — Posted on 2018-11-07

2112 Antibiotic killing of diversely generated populations of non-replicating bacteria

Shah, N.; McCall, I. C.; Govindan, A. R.; Baquero, F.; Levin, B. R.

10.1101/464628 — microbiology — Posted on 2018-11-07

2113 Closed-Loop Control of Active Sensing Movements Regulates Sensory Slip.

Biswas, D.; Arend, L. A.; Stamper, S. A.; Vagvölgyi, B. P.; Fortune, E. S.; Cowan, N. J.

10.1101/366609 — animal behavior and cognition — Posted on 2018-11-07

2114 A new in vitro assay measuring direct interaction of nonsense suppressors with the eukaryotic protein synthesis machinery

Ng, M. Y.; Zhang, H.; Weil, A.; Singh, V.; Jamiolkowski, R. M.; Baradaran-Heravi, A.; Roberge, M.; Jacobson, A.; Friesen, W.; Welch, E.; Goldman, Y.; Cooperman, B. S.

10.1101/330506 — biochemistry — Posted on 2018-11-07

2115 Gene regulation inference from single-cell RNA-seq data with linear differential equations and velocity inference

Aubin-Frankowski, P.-C.; Vert, J.-P.

10.1101/464479 — systems biology — Posted on 2018-11-07

2116 Selection bias in instrumental variable analyses

Hughes, R. A.; Davies, N. M.; Davey Smith, G.; Tilling, K.

10.1101/192237 — epidemiology — Posted on 2018-11-07

2117 Effects of BMP-2 on neovascularization during large bone defect regeneration

Pearson, H. B.; Mason, D. E.; Kegelman, C. D.; Zhao, L.; Dawahare, J.; Kacena, M. A.; Boerckel, J. D.

10.1101/464396 — bioengineering — Posted on 2018-11-07

2118 Reference-dependent preferences arise from structure learning

Hunter, L. E.; Gershman, S. J.

10.1101/252692 — animal behavior and cognition — Posted on 2018-11-07

2119 Genetic dissection of the different roles of hypothalamic kisspeptin neurons in regulating female reproduction

Wang, L.; Vanacker, C.; Burger, L. L.; Barnes, T.; Shah, Y. M.; Myers, M. G.; Moenter, S. M.

10.1101/464412 — neuroscience — Posted on 2018-11-07

2120 The functional brain favours segregated modular connectivity at old age unless targeted by neurodegeneration

Peraza, L. R.; O'Brien, J. T.; Blamire, A.; Kaiser, M.; Taylor, J.-P.

10.1101/463810 — neuroscience — Posted on 2018-11-07

2121 ReQTL - an allele-level measure of variation-expression genomic relationships

Spurr, L.; Alomran, N.; Slowinski, P.; Li, M.; Bousounis, P.; Zhang, Q.; Sein, J.; Crandall, K. A.; Tsaneva-Atanasova, K.; Horvath, A.

10.1101/464206 — genomics — Posted on 2018-11-07

2122 Genetic structure in the wood mouse and the bank vole: contrasting patterns in a human-modified and highly fragmented landscape

Biello, R.; Brunelli, A.; Sozio, G.; Havenstein, K.; Mortelliti, A.; Ketmaier, V.; Bertorelle, G.

10.1101/464057 — genetics — Posted on 2018-11-07

2123 DeepTCR: a deep learning framework for revealing structural concepts within TCR Repertoire

Sidhom, J.-W.; Larman, H. B.; Pardoll, D. M.; Baras, A. S.

10.1101/464107 — bioinformatics — Posted on 2018-11-07

2124 Comprehensive mass spectrometry-guided plant specialized metabolite phenotyping reveals metabolic diversity in the cosmopolitan plant family Rhamnaceae

Kang, K. B.; Ernst, M.; van der Hooft, J. J. J.; da Silva, R. R.; Park, J.; Medema, M. H.; Sung, S. H.; Dorrestein, P. C.

10.1101/463620 — plant biology — Posted on 2018-11-07

2125 Performance Limitations in Sensorimotor Control: Tradeoffs between Neural Computing and Accuracy in Tracking Fast Movements

Saxena, S.; Sarma, S. V.; Dahleh, M.

10.1101/464230 — neuroscience — Posted on 2018-11-07

2126 Aggression Subtypes Relate to Distinct Resting State Functional Connectivity in Disruptive Children and Adolescents

Werhahn, J. E.; Mohl, S.; Willinger, D.; Smigielski, L.; Roth, A.; Naaijen, J.; Mulder, L. M.; Glennon, J. C.; Hoekstra, P. J.; Dietrich, A.; Kleine Deters, R.; Aggensteiner, P. M.; Holz, N. E.; Baumeister, S.; Banaschewski, T.; Saam, M. C.; Schulze, U. M. E.; Lythgoe, D. J.; Sethi, A.; Craig, M.; Mastroianni, M.; Sagar-Ouriaghli, I.; Santosh, P. J.; Rosa, M.; Bargallo, N.; Castro-Fornieles, J.; Aragno, C.; Penzol, M. J.; Franke, B.; Zwiers, M. P.; Buitelaar, J. K.; Walitza, S.; Brandeis, D.

10.1101/462382 — neuroscience — Posted on 2018-11-07

2127 C. albicans white and opaque cells exhibit distinct spectra of organ colonization in standard mouse models of infection

Takagi, J.; Singh-Babak, S. D.; Lohse, M. B.; Dalal, C. K.; Johnson, A. D.

10.1101/461293 — microbiology — Posted on 2018-11-07

2128 Persistence of Fusarium oxysporum f. sp. fragariae in soil through asymptomatic colonization of rotation crops

Henry, P. M.; Pastrana, A. M.; Leveau, J. H. J.; Gordon, T. R.

10.1101/464099 — microbiology — Posted on 2018-11-07

2129 A machine learning approach to predicting autism risk genes: Validation of known genes and discovery of new candidates

Lin, Y.; Rajadhyaksha, A.; Potash, J.; Han, S.

10.1101/463547 — genetics — Posted on 2018-11-07

2130 BELLA: Berkeley Efficient Long-Read to Long-Read Aligner and Overlapper

Guidi, G.; Ellis, M.; Rokhsar, D.; Yelick, K.; Buluc, A.

10.1101/464420 — bioinformatics — Posted on 2018-11-07

2131 Rationalizing Translation Elongation by Reinforcement Learning

Hu, H.; Liu, X.; Xiao, A.; Song, S.; Zeng, J.

10.1101/463976 — bioinformatics — Posted on 2018-11-07

2132 A multi-species repository of social networks

Sah, P.; Mendez, J. D.; Bansal, S.

10.1101/464271 — animal behavior and cognition — Posted on 2018-11-07

2133 Ultrasound functional neuroimaging reveals propagation of task-related brain activity in behaving primates

Dizeux, A.; Gesnik, M.; Ahnine, H.; Blaize, K.; Arcizet, F.; Picaud, S.; Sahel, J.-A.; Deffieux, T.; Pouget, P.; Tanter, M.

10.1101/464487 — animal behavior and cognition — Posted on 2018-11-07

2134 Axonal localization of the Fragile X family of RNA binding proteins is conserved across mammals

Shepard, K. A.; Korsak, L. I. T.; Akins, M.

10.1101/464552 — neuroscience — Posted on 2018-11-07

2135 Integrating Culture-based Antibiotic Resistance Profiles with Whole-genome Sequencing Data for 11,087 Clinical Isolates

Galata, V.; Laczny, C. C.; Backes, C.; Hemmrich-Stanisak, G.; Schmolke, S.; Franke, A.; Meese, E.; Herrmann, M.; von Mueller, L.; Plum, A.; Mueller, R.; Staehler, C. F.; Posch, A. E.; Keller, A.

10.1101/463901 — genomics — Posted on 2018-11-07

2136 Rate variation in conserved noncoding DNA reveals regulatory pathways associated with social evolution

Rubin, B. E.; Jones, B. M.; Hunt, B.; Kocher, S. D.

10.1101/461079 — evolutionary biology — Posted on 2018-11-07

2137 A forest biogeochemistry model intercomparison on the East Coast of the United States

Erickson, A.; Strigul, N.

10.1101/464578 — ecology — Posted on 2018-11-07

2138 An Efficient, Scalable and Exact Representation of High-Dimensional Color Information Enabled via de Bruijn Graph Search

Almodaresi, F.; Pandey, P.; Ferdman, M.; Almodaresi, F.; Patro, R.

10.1101/464222 — bioinformatics — Posted on 2018-11-07

2139 Functional anomaly mapping reveals local and distant dysfunction caused by brain lesions

DeMarco, A. T.; Turkeltaub, P. T.

10.1101/464248 — neuroscience — Posted on 2018-11-07

2140 Longitudinal dentate nuclei iron concentration and atrophy in Friedreich ataxia: IMAGE-FRDA

Ward, P.; Harding, I. H.; Close, T. G.; Corben, L. A.; Delatycki, M. B.; Storey, E.; Georgiou-Karistianis, N.; Egan, G. F.

10.1101/464537 — neuroscience — Posted on 2018-11-07

2141 In for a pound, in for a penny: How the opportunity to gain reward influences the competition for memory resources

Talmi, D.; Daw, N.; Kavaliauskaite, D.

10.1101/464388 — neuroscience — Posted on 2018-11-07

2142 Disrupting Transcriptional Feedback Yields an Escape-Resistant Antiviral

Chaturvedi, S.; Wolf, M.; Vardi, N.; Singhal, R.; Weinberger, A. D.; Chan, M.; Weinberger, L.

10.1101/464495 — microbiology — Posted on 2018-11-07

2143 Noninvasive prenatal detection of fetal trisomy and single gene disease by shotgun sequencing of placenta originated exosome DNA: a proof-of-concept validation

Zhang, W.; Lu, S.; Zhao, J.; Dandan, P.; Zhang, H.; Yang, L.; Zeng, P.; Su, F.; Chen, Z.; Guo, M.; Gu, Y.; Luo, Y.; Hu, H.; Lu, Y.; Zhang, H.; Chen, F.; Gao, Y.

10.1101/464503 — genetics — Posted on 2018-11-07

2144 Prey’s traits mediate a neotropical toad diet

McElroy, M. T.; Donoso, D. A. A.

10.1101/464511 — ecology — Posted on 2018-11-07

2145 Spatio-Genetic and Phenotypic Modelling Elucidates Resistance and Re-Sensitisation to Treatment in Heterogeneous Melanoma

Hodgkinson, A.; Le Cam, L.; Trucu, D.; Radulescu, O.

10.1101/463877 — cancer biology — Posted on 2018-11-07

2146 Vec2SPARQL: integrating SPARQL queries and knowledge graph embeddings

Kulmanov, M.; Kafkas, S.; Karwath, A.; Malic, A.; Gkoutos, G.; Dumontier, M.; Hoehndorf, R.

10.1101/463778 — bioinformatics — Posted on 2018-11-07

2147 Data-Independent Acquisition Mass Spectrometry to Localize Phosphosites

Li, Q.-R.; Wang, S.-S.; Zhu, H.-W.; Xia, F.-Y.; Roepstorff, P.; Wu, J.-R.; Zeng, R.

10.1101/464545 — bioinformatics — Posted on 2018-11-07

2148 Guiding the refinement of biochemical knowledgebases with ensembles of metabolic networks and semi-supervised learning

Medlock, G. L.; Papin, J. A.

10.1101/460071 — systems biology — Posted on 2018-11-07

2149 Capturing Multicellular System Designs Using the Synthetic Biology Open Language (SBOL)

Brown, B.; Atallah, C.; McLaughlin, J. A.; Misirli, G.; Goni-Moreno, A.; Roehner, N.; Skelton, D. J.; Bartley, B.; Beal, J.; Poh, C. L.; Ofiteru, I. D.; Wipat, A.

10.1101/463844 — synthetic biology — Posted on 2018-11-07

2150 Rehumanizing the homeless: Altered BOLD response following contact with an extreme outgroup

Kirk, P. A.; Cohen, A. O.; Sinnott-Armstrong, W.; Harris, L. T.

10.1101/462671 — neuroscience — Posted on 2018-11-07

2151 SIP: An Interchangeable Pipeline for scRNA-seq Data Processing

Chen, S.; Wei, Z.; Chen, Y.; Hua, K.; Zhang, W.; Liu, C.; Gao, H.; Sun, H.; Wang, Z.; Yin, Q.; Chen, S.; Song, S.; Feng, C.; Lu, H.; Jiang, R.; Wang, X.; Gu, J.; Zhang, X.

10.1101/456772 — bioinformatics — Posted on 2018-11-06

2152 Logistic Regression Analysis of Multiple Interosseous Hand-Muscle Activities using Surface Electromyography during Finger-Oriented Tasks

Yokoyama, M.; Yanagisawa, M.

10.1101/278051 — bioengineering — Posted on 2018-11-06

2153 Ventral hippocampal projections to the medial prefrontal cortex regulate social memory

Phillips, M. L.; Robinson, H. A.; Pozzo-Miller, L.

10.1101/461533 — neuroscience — Posted on 2018-11-06

2154 ARF5/MONOPTEROS directly regulates miR390 expression in theArabidopsis thaliana primary root meristem

Ghosh Dastidar, M.; Scarpa, A.; Maegele, I.; Ruiz Duarte, P.; von Born, P.; Bald, L.; Jouannet, V.; Maizel, A.

10.1101/463943 — plant biology — Posted on 2018-11-06

2155 Impacts of Deep-Sea Mining on Microbial Ecosystem Services

Orcutt, B. N.; Bradley, J.; Brazelton, W. J.; Estes, E. J.; Goordial, J. M.; Huber, J. A.; Jones, R. M.; Mahmoudi, N.; Marlow, J. J.; Murdock, S.; Pachiadaki, M.

10.1101/463992 — microbiology — Posted on 2018-11-06

2156 The interaction between genotype and maternal nutritional environments affects tomato seed and seedling quality

Geshnizjani, N.; Sarikhani Khorami, S.; Willems, L. A. J.; Snoek, B. L.; Hilhorst, H.; Ligterink, W.

10.1101/458836 — plant biology — Posted on 2018-11-06

2157 A wheat/rye polymorphism affects seminal root length and is associated with drought and waterlogging tolerance

Howell, T.; Moriconi, J. I.; Zhao, X.; Hegarty, J.; Fahima, T.; Santa-Maria, G.; Dubcovsky, J.

10.1101/463281 — plant biology — Posted on 2018-11-06

2158 A chemogenetic approach for optical monitoring of voltage in neurons

Sundukova, M.; Prifti, E.; Bucci, A.; Kirillova, K.; Serrao, J.; Reymond, L.; Umebayashi, M.; Hovius, R.; Riezman, H.; Johnsson, K.; Heppenstall, P. A.

10.1101/463109 — neuroscience — Posted on 2018-11-06

2159 Noise induced bimodality in genetic circuits with monostable positive feedback

Bokes, P.; Singh, A.

10.1101/464297 — systems biology — Posted on 2018-11-06

2160 A novel link between Cell Wall Integrity pathway and Flocculation, regulated by yeast Sen1 dependent interplay between Rlm1 and Tup1

Sariki, S. K.; Kumawat, R. S.; Singh, V.; Tomar, R. S.

10.1101/463703 — molecular biology — Posted on 2018-11-06

2161 Excessive ENaC-mediated sodium influx drives NLRP3 inflammasome-dependent autoinflammation in Cystic Fibrosis

Scambler, T.; Jarosz-Griffiths, H. H.; Lara-Reyna, S.; Pathak, S.; Wong, C.; Holbrook, J.; Martinon, F.; Savic, S.; Peckham, D.; McDermott, M. F.

10.1101/458208 — immunology — Posted on 2018-11-06

2162 Mechanisms driving endosperm-based hybrid incompatibilities: insights from hybrid monkeyflowers

Kinser, T. J.; Smith, R. D.; Lawrence, A. H.; Cooley, A. M.; Vallejo-Marin, M.; Conradi Smith, G.; Puzey, J. R.

10.1101/461939 — evolutionary biology — Posted on 2018-11-06

2163 A novel cell-based sensor detecting the activity of individual basic proprotein convertases

Low, K. I.; Hardes, K.; Fedeli, C.; Seidah, N. G.; Constam, D. B.; Pasquato, A.; Steinmetzer, T.; Roulin, A.; Kunz, S.

10.1101/464032 — biochemistry — Posted on 2018-11-06

2164 Promoter-intrinsic and local chromatin features determine gene repression in lamina-associated domains

Leemans, C.; van der Zwalm, M.; Brueckner, L.; Comoglio, F.; van Schaik, T.; Pagie, L.; van Arensbergen, J.; van Steensel, B.

10.1101/464081 — genomics — Posted on 2018-11-06

2165 Photoperiod-dependent expression of MicroRNA in Drosophila

Pegoraro, M.; Tauber, E.

10.1101/464180 — genomics — Posted on 2018-11-06

2166 The Time Scale of Evolution

Santos, D.; Perfeito, L.

10.1101/464362 — evolutionary biology — Posted on 2018-11-06

2167 A simple Dot Blot Assay for population scale screening of DNA methylation

Luviano, N.; Diaz-Palma, S.; Cosseau, C.; Grunau, C.

10.1101/454439 — ecology — Posted on 2018-11-06

2168 Molecularly distinct models of zebrafish Myc-induced B cell leukemia

Borga, C.; Foster, C.; Iyer, S.; Garcia, S.; Langenau, D.; Frazer, J. K.

10.1101/446245 — cancer biology — Posted on 2018-11-06

2169 PS membrane asymmetry influences the folding and insertion of a transmembrane helix

Scott, H. L.; Heberle, F. A.; Katsaras, J.; Barrera, F. N.

10.1101/454504 — biophysics — Posted on 2018-11-06

2170 Comprehensive evaluation of cell-type quantification methods for immuno-oncology

Sturm, G.; Finotello, F.; Petitprez, F.; Zhang, J. D.; Baumbach, J.; Fridman, W. H.; List, M.; Aneichyk, T.

10.1101/463828 — bioinformatics — Posted on 2018-11-06

2171 Transcriptional organization of autism spectrum disorder and its connection to ASD risk genes and phenotypic variation

Gazestani, V. H.; Pramparo, T.; Nalabolu, S.; Kellman, B. P.; Murry, S.; Lopez, L.; Pierce, K.; Courchesne, E.; Lewis, N. E.

10.1101/435917 — systems biology — Posted on 2018-11-06

2172 Single-cell transcriptome analysis of Physcomitrella leaf cells during reprogramming using microcapillary manipulation

Kubo, M.; Nishiyama, T.; Tamada, Y.; Sano, R.; Ishikawa, M.; Murata, T.; Imai, A.; Lang, D.; Demura, T.; Reski, R.; Hasebe, M.

10.1101/463448 — plant biology — Posted on 2018-11-06

2173 Characterization of glutamatergic VTA neural population responses to aversive and rewarding conditioning in freely-moving mice

Montardy, Q.; Zhou, Z.; Lei, Z.; Liu, X.; Zeng, P.; Chen, C.; Liu, Y.; Sanz-Leon, P.; Huang, K.; Wang, L.

10.1101/464040 — neuroscience — Posted on 2018-11-06

2174 Long-range phase synchronization of high-gamma activity in human cortex

Arnulfo, G.; Wang, S.; Williams, N.; Hirvonen, J.; Fato, M.; Nobili, L.; Cardinale, F.; Rubino, A.; Zhigalov, A.; Palva, S.; Palva, J.

10.1101/442251 — neuroscience — Posted on 2018-11-06

2175 PETISCO is a novel protein complex required for 21U RNA biogenesis and embryonic viability

Cordeiro Rodrigues, R. J.; de Jesus Domingues, A. M.; Hellmann, S.; Dietz, S.; de Albuquerque, B.; Renz, C.; Ulrich, H. D.; Butter, F.; Ketting, R.

10.1101/463711 — molecular biology — Posted on 2018-11-06

2176 Olfactory sensory neurons mediate ultra-rapid antiviral immune responses in teleosts in a TrkA-dependent manner

Sepahi, A.; Kraus, A.; Johnston, C. A.; Galindo-Villegas, J.; Kelly, C.; Garcia-Moreno, D.; Munoz, P.; Mulero, V.; Huertas, M.; Salinas, I.

10.1101/464214 — immunology — Posted on 2018-11-06

2177 pyMeSHSim: an integrative python package to realize biomedical named entity recognition, normalization and comparison

Luo, Z.-H.; Shi, M.-W.; Yang, Z.; Zhang, H.-Y.; Chen, Z.-X.

10.1101/459172 — bioinformatics — Posted on 2018-11-06

2178 Spanning spatiotemporal scales with simultaneous mesoscopic Ca2+ imaging and functional MRI

Lake, E. M.; Ge, X.; Shen, X.; Herman, P.; Hyder, F.; Cardin, J. A.; Higley, M. J.; Scheinost, D.; Papademetris, X.; Crair, M. C.; Constable, R. T.

10.1101/464305 — neuroscience — Posted on 2018-11-06

2179 Sex allocation conflict and sexual selection throughout the lifespan of eusocial colonies

Avila, P.; Fromhage, L.; Gonzalez-Forero, M.; Lehmann, L.

10.1101/454512 — evolutionary biology — Posted on 2018-11-06

2180 Stem cell receptor degradation by niche cells restricts signalling

Ladyzhets, S.; Inaba, M.

10.1101/414078 — developmental biology — Posted on 2018-11-06

2181 Motile curved bacteria are Pareto-optimal

Schuech, R.; Hoehfurtner, T.; Smith, D.; Humphries, S.

10.1101/441139 — biophysics — Posted on 2018-11-06

2182 Mutations in bacterial genes induce unanticipated changes in the relationship between bacterial pathogens in experimental otitis media

Lakhani, V.; Tan, L.; Mukherjee, S.; Stewart, W.; Swords, W. E.; Das, J.

10.1101/464321 — microbiology — Posted on 2018-11-06

2183 Dynamic network partnerships and social contagion drive cooperation

Dakin, R.; Ryder, T. B.

10.1101/430843 — animal behavior and cognition — Posted on 2018-11-06

2184 Leveraging evolutionary relationships to improve Anopheles genome assemblies

Waterhouse, R. M.; Aganezov, S.; Anselmetti, Y.; Lee, J.; Ruzzante, L.; Reijnders, M. J.; Berard, S.; Feron, R.; George, P.; Hahn, M. W.; Howell, P. I.; Kamali, M.; Koren, S.; Lawson, D.; Maslen, G.; Peery, A.; Phillippy, A. M.; Sharakhova, M. V.; Tannier, E.; Unger, M. F.; Zhang, S. V.; Alekseyev, M. A.; Besansky, N. J.; Chauve, C.; Emrich, S. J.; Sharakhov, I. V.

10.1101/434670 — genomics — Posted on 2018-11-06

2185 Harnessing natural diversity to identify key amino acid residues in prolidase

Schilbert, H. M.; Pellegrinelli, V.; Rodriguez-Cuenca, S.; Vidal-Puig, A.; Pucker, B.

10.1101/423475 — evolutionary biology — Posted on 2018-11-06

2186 NCLX prevents cell death during adrenergic activation of the brown adipose tissue

Assali, E. A.; Jones, A. E.; Veliova, M.; Taha, M.; Miller, N.; Shum, M.; Oliveira, M. F.; Las, G.; Liesa, M.; Sekler, I.; Shirihai, O. S.

10.1101/464339 — physiology — Posted on 2018-11-06

2187 Nonlinear processing of shape information in rat lateral extrastriate cortex

Matteucci, G.; Bellacosa Marotti, R.; Rosselli, F. B.; Zoccolan, D.

10.1101/341792 — neuroscience — Posted on 2018-11-06

2188 Phage Mediate Bacterial Self Recognition

Song, S.; Guo, Y.; Kim, J.-S.; Wang, X.; Wood, T. K.

10.1101/413146 — molecular biology — Posted on 2018-11-06

2189 Tree-sequence recording in SLiM opens new horizons for forward-time simulation of whole genomes

Haller, B. C.; Galloway, J.; Kelleher, J.; Messer, P. W.; Ralph, P. L.

10.1101/407783 — evolutionary biology — Posted on 2018-11-06

2190 Bacteria in Paper, a versatile platform to study bacterial ecology

Hol, F.; Whitesides, G. M.; Dekker, C.

10.1101/464347 — ecology — Posted on 2018-11-06

2191 Plum is a novel regulator of synaptic function and muscle size in D. melanogaster

Augustin, H.; Spiers, J. G.; Woodling, N. S.; Steinert, J. R.; Partridge, L.

10.1101/463885 — neuroscience — Posted on 2018-11-06

2192 Desmoplakin is required for epidermal integrity and morphogenesis in the Xenopus laevis embryo

Dickinson, A. J. G.; Krishnan Bharathan, N.

10.1101/464370 — developmental biology — Posted on 2018-11-06

2193 Biphasic recruitment of TRF2 to DNA damage sites promotes non-sister chromatid homologous recombination repair

Kong, X.; Cruz, G.; Trinh, S.; Zhu, X.-D.; Berns, M.; Yokomori, K.

10.1101/305169 — cell biology — Posted on 2018-11-06

2194 A feature selection strategy for gene expression time series experiments with hidden Markov models

Cardenas-Ovando, R. A.; Fernandez-Figueroa, E. A.; Rueda-Zarate, H. A.; Noguez, J.; Rangel-Escareno, C.

10.1101/392761 — bioinformatics — Posted on 2018-11-06

2195 Neurons of the inferior olive respond to broad classes of sensory input while subject to homeostatic control

Ju, C.; Bosman, L. W.; Hoogland, T. M.; Velauthapillai, A.; Murugesan, P.; Warnaar, P.; Negrello, M.; De Zeeuw, C. I.

10.1101/379149 — neuroscience — Posted on 2018-11-06

2196 Fst between archaic and present-day samples

Ortega-Del Vecchyo, D.; Slatkin, M.

10.1101/362053 — evolutionary biology — Posted on 2018-11-06

2197 Functional degradation: a mechanism of NLRP1 inflammasome activation by diverse pathogen enzymes

Sandstrom, A.; Mitchell, P. S.; Goers, L.; Mu, E. W.; Lesser, C. F.; Vance, R. E.

10.1101/317834 — immunology — Posted on 2018-11-06

2198 Trophic interaction modifications disrupt the structure and stability of food webs

Terry, J. C.; Morris, R. J.; Bonsall, M. B.

10.1101/345280 — ecology — Posted on 2018-11-06

2199 Predicting bilateral knee pain from MR imaging using deep neural networks

Chang, G. H.; Felson, D. T.; Qiu, S.; Capellini, T. D.; Kolachalama, V. B.

10.1101/463497 — bioengineering — Posted on 2018-11-06

2200 Transposable elements are important contributors to standing variation in gene expression in Capsella grandiflora

Uzunovic, J.; Josephs, E. B.; Stinchcombe, J. R.; Wright, S. I.

10.1101/289173 — evolutionary biology — Posted on 2018-11-06

2201 Concurrent Atomic Force Spectroscopy

Pimenta-Lopes, C.; Suay-Corredera, C.; Velazquez-Carreras, D.; Sanchez-Ortiz, D.; Alegre-Cebollada, J.

10.1101/293506 — biophysics — Posted on 2018-11-06

2202 The research progress of p53 tumour suppressor activity controlled by Numb in triple-negative breast cancer

Jie, X.; Cheng, Y.; Xue, Q.; Luo, Y.; Cao, Y.; Cao, Y.

10.1101/463802 — molecular biology — Posted on 2018-11-06

2203 Spinocerebellar ataxia type 11-associated alleles of Ttbk2 dominantly interfere with ciliogenesis and cilium stability.

Bowie, E.; Norris, R.; Anderson, K. V.; Goetz, S.

10.1101/274266 — cell biology — Posted on 2018-11-06

2204 Analysis of cholesterol export from endo-lysosomes by Niemann Pick C2 protein using combined fluorescence and X-ray microscopy

Dupont, A.; Lund, F.; Jensen, M. L. V.; Szomek, M.; Nielsen, G. K.; Heegaard, C. W.; Guttmann, P.; Werner, S.; McNally, J.; Schneider, G.; Kapishnikov, S.; Wustner, D.

10.1101/462481 — cell biology — Posted on 2018-11-06

2205 Convergent recruitment of life cycle regulators to direct sporophyte development in two eukaryotic supergroups

Arun, A.; Coelho, S. M.; Peters, A. F.; Bourdareau, S.; Peres, L.; Scornet, D.; Strittmatter, M.; Lipinska, A. P.; Yao, H.; Godfroy, O.; Montecinos, G. J.; Avia, K.; Macaisne, N.; Troadec, C.; Bendahmane, A.; Cock, J. M.

10.1101/460436 — plant biology — Posted on 2018-11-06

2206 Convergence of virulence and multidrug resistance in a single plasmid vector in multidrug-resistant Klebsiella pneumoniae ST15

Lam, M. M.; Wyres, K. L.; Wick, R. R.; Judd, L. M.; Fostervold, A.; Holt, K. E.; Lohr, I. H.

10.1101/463406 — genomics — Posted on 2018-11-06

2207 Ectopic expression induces abnormal somatodendritic distribution of tau in the mouse brain

Kubo, A.; Ueda, S.; Yamane, A.; Wada-Kakuda, S.; Matsuyama, M.; Nomori, A.; Takashima, A.; Goto, M.; Ito, M.; Tomiyama, T.; Mori, H.; Ihara, Y.; Misonou, H.; Miyasaka, T.

10.1101/457853 — neuroscience — Posted on 2018-11-06

2208 A uniform in vitro efficacy dataset to guide antimicrobial peptide design

Nagarajan, D.; Nagarajan, T.; Nanajkar, N.; Chandra, N.

10.1101/463588 — microbiology — Posted on 2018-11-06

2209 The grass subfamily Pooideae: late Cretaceous origin and climate-driven Cenozoic diversification

Schubert, M.; Marcussen, T.; Meseguer, A. S.; Fjellheim, S.

10.1101/462440 — evolutionary biology — Posted on 2018-11-06

2210 Identifying Important Interaction Modifications in Ecological Systems

Terry, C.; Bonsall, M. B.; Morris, R. J.

10.1101/228874 — ecology — Posted on 2018-11-06

2211 TH2BS12P histone mark is enriched in the unsynapsed axes of the XY body and predominantly associates with H3K4me3-containing genomic regions in mammalian spermatocytes

Mahadevan, A.; Pentakota, S.; Roy, R.; Bhaduri, U.; Rao, S. M. R.

10.1101/455659 — cell biology — Posted on 2018-11-06

2212 Mammalian kinetochores count attached microtubules in a sensitive and switch-like manner to control cell cycle progression

Kuhn, J. A.; Dumont, S.

10.1101/463471 — cell biology — Posted on 2018-11-06

2213 NEPRE: a Scoring Function for Protein Structures based on Neighbourhood Preference

Liu, S.; Xiang, X.; liu, h.

10.1101/463554 — bioinformatics — Posted on 2018-11-06

2214 Spike: A GPU Optimised Spiking Neural Network Simulator

Ahmad, N.; Isbister, J. B.; Smithe, T. S. C.; Stringer, S. M.

10.1101/461160 — neuroscience — Posted on 2018-11-06

2215 Inferring causal connectivity from pairwise recordings and optogenetics

Lepperod, M. E.; Stöber, T.; Hafting, T.; Fyhn, M.; Kording, K. P.

10.1101/463760 — neuroscience — Posted on 2018-11-06

2216 Addiction beyond pharmacological effects: the role of environment complexity and bounded rationality

Ognibene, D.; Fiore, V. G.; Gu, X.

10.1101/179739 — neuroscience — Posted on 2018-11-06

2217 High-throughput RNA-Seq analysis on plant response under fluctuating temperature conditions

Kamitani, M.; Kashima, M.; Tezuka, A.; Nagano, A. J.

10.1101/463596 — plant biology — Posted on 2018-11-06

2218 Predicting response to motor therapy in chronic stroke patients using Machine Learning

Tozlu, C.; Edwards, D.; Boes, A.; Labar, D.; Tsagaris, K. Z.; Silverstein, J.; Lane, H.; Sabuncu, M.; Liu, C.; Kuceyeski, A.

10.1101/457416 — neuroscience — Posted on 2018-11-06

2219 A chemogenetic approach for optical monitoring of voltage in neurons

Sundukova, M.; Prifti, E.; Bucci, A.; Kirillova, K.; Serrao, J.; Reymond, L.; Umebayashi, M.; Hovius, R.; Riezman, H.; Johnsson, K.; Heppenstall, P. A.

10.1101/463109 — neuroscience — Posted on 2018-11-06

2220 Unraveling the implications of environmental, host and pathogen-specific determinants on clinical presentations and disease progression among Indian melioidosis patients.

Shaw, T.; Tellapragada, C.; Kamath, A.; Kalwaje Eshwara, V.; Mukhopadhyay, C.

10.1101/463687 — microbiology — Posted on 2018-11-06

2221 Drift and directional selection are the evolutionary forces driving gene expression divergence in eye and brain tissue of Heliconius butterflies

Catalan, A.; Briscoe, A. D.; Hoehna, S.

10.1101/463174 — evolutionary biology — Posted on 2018-11-06

2222 Interaction modifications lead to greater robustness than pairwise non-trophic effects in food webs

Terry, J. C.; Morris, R. J.; Bonsall, M.

10.1101/377473 — ecology — Posted on 2018-11-06

2223 The cell wall regulates dynamics and size of plasma-membrane nanodomains in Arabidopsis.

McKenna, J. F.; Rolfe, D.; Webb, S. E. D.; Tolmie, A. F.; Botchway, S. W.; Martin-Fernandez, M.; Hawes, C.; Runions, J.

10.1101/455782 — cell biology — Posted on 2018-11-06

2224 Cell rounding causes genomic instability by dissociation of single-stranded DNA-binding proteins

Guo, Q.; Liao, X.; Wang, X.; Liu, L.; Song, B.

10.1101/463653 — cell biology — Posted on 2018-11-06

2225 The CURE for Culturing Fastidious Microbes

Bakshi, A.; Webber, A. T.; Patrick, L. E.; Wischusen, E. W.; Thrash, J. C.

10.1101/167130 — scientific communication and education — Posted on 2018-11-06

2226 Evoked zero-spin echoes show evidence of quantum consciousness

Kerskens, C.; Lopez Perez, D.

10.1101/219931 — neuroscience — Posted on 2018-11-06

2227 Repression of Dlx1/2 Signaling by Nolz-1/Znf503 is Essential for Parcellation of the Striatal Complex into Dorsal and Ventral Striatum

Lu, K.-M.; Chen, S.-Y.; Ko, H.-A.; Huang, T.-H.; Hao, J. H.-J.; Yan, Y.-T.; Chang, S. L.-Y.; Evans, S.; Liu, F.-C.

10.1101/463398 — neuroscience — Posted on 2018-11-06

2228 The transcription factors TFEB and TFE3 link the FLCN-AMPK signaling axis to innate immune response and pathogen resistance

El-Houjeiri, L.; Possik, E.; Tarika Vijayaraghavan, T.; Paquette, M.; Martina, J. A.; Kazan, J. M.; Ma, E. H.; Jones, R.; Blanchette, P.; Puertollano, R.; Pause, A.

10.1101/463430 — immunology — Posted on 2018-11-06

2229 AnnoTree: visualization and exploration of a functionally annotated microbial tree of life

Mendler, K.; Chen, H.; Parks, D. H.; Hug, L. A.; Doxey, A. C.

10.1101/463455 — bioinformatics — Posted on 2018-11-06

2230 Transmission of mechanical information by purinergic signaling

Mikolajewicz, N.; Sehayek, S.; Wiseman, P. W.; Komarova, S. V.

10.1101/463315 — biophysics — Posted on 2018-11-06

2231 Nanoscale fracture of defective popgraphene monolayer

Meng, F.; Ni, M.; Chen, F.; Song, J.; Wei, D.

10.1101/463505 — biophysics — Posted on 2018-11-06

2232 adductomicsR: A package for detection and quantification of protein adducts from mass spectra of tryptic digests

Hayes, J. L.; Edmands, W. M.; Yano, Y.; Grigoryan, H.; Schiffman, C.; Dudoit, S.; Rappaport, S.

10.1101/463331 — bioinformatics — Posted on 2018-11-06

2233 Physiological and transcriptomic analysis of yellow leaf

Zhang, S.; Wu, X.; Cui, J.; Zhang, F.; Wan, X.; Liu, Q.; Zhong, Y.; Lin, T.

10.1101/463224 — bioinformatics — Posted on 2018-11-06

2234 Individualised MRI training for paediatric neuroimaging in autism spectrum disorders: A child-focused approach

Pua, E. P. K.; Barton, S.; Williams, K.; Craig, J. M.; Seal, M.

10.1101/462234 — neuroscience — Posted on 2018-11-06

2235 Profiling immunoglobulin repertoires across multiple human tissues by RNA Sequencing

Mangul, S.; Mandric, I.; Yang, H. T.; Strauli, N.; Montoya, D.; Rotman, J.; Der Wey, W. V.; Ronas, J. R.; Statz, B.; Zelikovsky, A.; Spreafico, R.; Shifman, S.; Zaitlen, N.; Rossetti, M.; Ansel, K. M.; Eskin, E.

10.1101/089235 — immunology — Posted on 2018-11-06

2236 Basal extrusion drives cell invasion and mechanical stripping of E-cadherin

Fadul, J.; Slattum, G. M.; Redd, N. M.; Zulueta-Coarasa, T. F.; Redd, M.; Daetwyler, S.; Hedeen, D.; Huisken, J.; Rosenblatt, J.

10.1101/463646 — cancer biology — Posted on 2018-11-06

2237 Divergent effects of acute and prolonged interleukin 33 exposure onmast cell IgE-mediated functions

Rönnberg, E.; Ghaib, A.; Ceriol, C.; Enoksson, M.; Arock, M.; Säfholm, J.; Ekoff, M.; Nilsson, G.

10.1101/463950 — immunology — Posted on 2018-11-06

2238 Differential phase partition of a PICS complex is required for piRNA processing and chromosome segregation in C. elegans

Zeng, C.; Weng, C.; Wang, X.; Yan, Y.-H.; Li, W.-J.; Xu, D.; Hong, M.; Liao, S.; Feng, X.; Dong, M.-Q.; Xu, C.; Guang, S.

10.1101/463919 — genetics — Posted on 2018-11-06

2239 Architectural principles for Hfq/Crc-mediated regulation of gene expression

Luisi, B. F.; Pei, X. Y.; Dendooven, T.; Sonnleitner, E.; Chen, S.; Blasi, U.

10.1101/464024 — biophysics — Posted on 2018-11-06

2240 Glycan cross-feeding drives mutualism between Fusobacterium and the vaginal microbiota

Agarwal, K.; Robinson, L.; Perry, J.; Foster, L.; Lin, H.; Tortelli, B.; O Brien, V. P.; Reno, H.; Gilbert, N.; Lewis, W.; Lewis, A.

10.1101/463349 — microbiology — Posted on 2018-11-06

2241 Single cell analysis reveals dynamics of transposable element transcription following epigenetic de-repression

Brocks, D.; Chomsky, E.; Mukamel, Z.; Lifshitz, A.; Tanay, A.

10.1101/462853 — genomics — Posted on 2018-11-06

2242 Schistosoma mansoni does not and cannot oxidize fatty acids, but these are used for biosynthetic purposes instead

Bexkens, M. L.; Mebius, M. M.; Houweling, M.; Brouwers, J. F.; Tielens, A. G. M.; van Hellemond, J. J.

10.1101/463984 — biochemistry — Posted on 2018-11-06

2243 Phylogenomics of the adaptive radiation of Triturus newts supports gradual ecological niche expansion towards an incrementally aquatic lifestyle

Wielstra, B.; McCartney-Melstad, E.; Arntzen, J. W.; Butlin, R. K.; Shaffer, H. B.

10.1101/463752 — evolutionary biology — Posted on 2018-11-06

2244 Structure of a bacterial ATP synthase

Guo, H.; Suzuki, T.; Rubinstein, J. L.

10.1101/463968 — biochemistry — Posted on 2018-11-06

2245 De novo clustering of long-read transcriptome data using a greedy, quality-value based algorithm

Sahlin, K.; Medvedev, P.

10.1101/463463 — bioinformatics — Posted on 2018-11-06

2246 A comparison of deep learning and linear-nonlinear cascade approaches to neural encoding

Moskovitz, T. H.; Roy, N. A.; Pillow, J. W.

10.1101/463422 — neuroscience — Posted on 2018-11-06

2247 Parameter Identifiability of the Generalized Lotka-Volterra Model for Microbiome Studies

Remien, C. H.; Eckwright, M. J.; Ridenhour, B. J.

10.1101/463372 — microbiology — Posted on 2018-11-06

2248 Abrogation of Stem Loop Binding Protein (Slbp) function leads to a failure of cells to transition from proliferation to differentiation, retinal coloboma and midline axon guidance deficits.

Turner, K.; Hoyle, J.; Valdivia, L. E.; Cerveny, K.; Hart, W.; Mangoli, M.; Geisler, R.; Rees, M.; Houart, C.; Poole, R. J.; Wilson, S. W.; Gestri, G.

10.1101/464123 — genetics — Posted on 2018-11-06

2249 Gkmexplain: Fast and Accurate Interpretation of Nonlinear Gapped k-mer Support Vector Machines Using Integrated Gradients

Shrikumar, A.; Prakash, E.; Kundaje, A.

10.1101/457606 — bioinformatics — Posted on 2018-11-06

2250 Dynamic transcriptome profiles within spermatogonial and spermatocyte populations during postnatal testis maturation revealed by single-cell sequencing

Grive, K. J.; Hu, Y.; Shu, E.; Grimson, A.; Elemento, O.; Grenier, J. K.; Cohen, P. E.

10.1101/464149 — genomics — Posted on 2018-11-06

2251 Increased association between Epstein-Barr virus EBNA2 from type 2 strains and the transcriptional repressor BS69 restricts B cell growth

West, M. J.; Ponnusamy, R.; Khatri, R.; Correia, P. B.; Mancini, E.; Farrell, P. J.

10.1101/464131 — microbiology — Posted on 2018-11-06

2252 Combined single-cell profiling of expression and DNA methylation reveals splicing regulation and heterogeneity

Linker, S. M.; Urban, L.; Clark, S.; Chhatriwala, M.; Amatya, S.; McCarthy, D.; Ebersberger, I.; Vallier, L.; Reik, W.; Stegle, O.; Bonder, M. J.

10.1101/328138 — bioinformatics — Posted on 2018-11-06

2253 A prebiotic protocell model based on dynamic protein membranes accommodating anabolic reactions

Schreiber, A.; Huber, M. C.; Schiller, S. M.

10.1101/463356 — evolutionary biology — Posted on 2018-11-06

2254 HDGF supports anti-apoptosis and pro-fibrosis in pancreatic stellate cells of pancreatic cancer

Chen, Y.-T.; Wang, T.-W.; Chang, T.-H.; Hsu, T.-P.; Chi, J.-Y.; Hsiao, Y.-W.; Li, C.-F.; Wang, J.-M.

10.1101/272542 — cancer biology — Posted on 2018-11-06

2255 Sulfur reduction coupling with anaerobic ammonium oxidation power the origin of life

Bao, P.; Li, G.-X.; Li, H.

10.1101/461707 — microbiology — Posted on 2018-11-05

2256 Detection of enterovirus protein and RNA in multiple tissues from nPOD organ donors with type 1 diabetes

Oikarinen, M.; Laiho, J. E.; Oikarinen, S.; Richardson, S. J.; Kusmartseva, I.; Campbell-Thompson, M.; Morgan, N. G.; Pugliese, A.; Tauriainen, S.; Toniolo, A.; Hyoty, H.

10.1101/459347 — epidemiology — Posted on 2018-11-05

2257 Single-cell heterogeneity in the chloroplast redox state mediates acclimation to stress in a marine diatom

Mizrachi, A.; Graff van Creveld, S.; Shapiro, O. H.; Rosenwasser, S.; Vardi, A.

10.1101/319517 — microbiology — Posted on 2018-11-05

2258 Experimental Human Challenge Reveals Distinct Mechanisms of Acquisition or Protection Against Pneumococcal Colonization

Nikolaou, E.; Jochems, S. P.; Mitsi, E.; Pojar, S.; Negera, E.; Reine, J.; Carniel, B.; Soares-Schanoski, A.; Connor, V.; Adler, H.; Zaidi, S. R.; Hales, C.; Hill, H.; Hyder-Wright, A.; Gordon, S. B.; Rylance, J.; Ferreira, D.

10.1101/459495 — immunology — Posted on 2018-11-05

2259 Acute but not inherited demyelination in mouse models leads to brain tissue stiffness changes

Eberle, D.; Fodelianaki, G.; Kurth, T.; Jagielska, A.; Moellmert, S.; Ulbricht, E.; Wagner, K.; Taubenberger, A. V.; Traeber, N.; Escolano, J.-C.; Franklin, R.; Van Vliet, K. J.; Guck, J.

10.1101/449603 — biophysics — Posted on 2018-11-05

2260 Preclinical Modeling of Exposure to a Global Marine Bio Contaminant: Effects of In Utero Domoic Acid Exposure on Neonatal Behavior and Infant Memory

Grant, K. S.; Crouthamel, B.; Kenney, C.; McKain, N.; Petroff, R.; Shum, S.; Jing, J.; Isoherranen, N.; Burbacher, T. M.

10.1101/456210 — pharmacology and toxicology — Posted on 2018-11-05

2261 A complete Cannabis chromosome assembly and adaptive admixture for elevated cannabidiol (CBD) content

Grassa, C. J.; Wenger, J. P.; Dabney, C.; Poplawski, S. G.; Motley, S. T.; Michael, T. P.; Schwartz, C. J.; Weiblen, G. D.

10.1101/458083 — genomics — Posted on 2018-11-05

2262 Murine MPDZ-Linked Hydrocephalus is Caused by Hyperpermeability of the Choroid Plexus

Yang, J.; Simonneau, C.; Kilker, R.; Oakley, L.; Byrne, M.; Nichtova, Z.; Stefanescu, I.; Pardeep-Kumar, F.; Tripathi, S.; Londin, E.; Saugier-Veber, P.; Willard, B.; Thakur, M.; Pickup, S.; Smeyne, R.; Horowitz, A.

10.1101/446500 — neuroscience — Posted on 2018-11-05

2263 Efficient long single molecule sequencing for cost effective and accurate sequencing, haplotyping, and de novo assembly

Wang, O.; Chin, R.; Cheng, X.; Wu, M.; Mao, Q.; Tang, J.; Sun, Y.; Lam, H.; Chen, D.; Zhou, Y.; Wang, L.; Fan, F.; Zou, Y.; Anderson, E.; Xie, Y.; Zhang, R.; Drmanac, S.; Nguyen, D.; Xu, C.; Villarosa, C.; Gablenz, S.; Barua, N.; Nguyen, S.; Tian, W.; Liu, J.; Wang, J.; Liu, X.; Qi, X.; Chen, A.; Wang, H.; Dong, Y.; Zhang, W.; Alexeev, A.; Yang, H.; Wang, J.; Kristiansen, K.; Xu, X.; Drmanac, R.; Peters, B.

10.1101/324392 — genomics — Posted on 2018-11-05

2264 The Sicilian wolf: genetic identity of a recently extinct insular population

Angelici, F. M.; Ciucani, M. M.; Angelini, S.; Annesi, F.; Caniglia, R.; Castiglia, R.; Fabbri, E.; Galaverni, M.; Palumbo, D.; Ravegnini, G.; Rossi, L.; Siracusa, A. M.; Cilli, E.

10.1101/453365 — genetics — Posted on 2018-11-05

2265 The genomic landscape of recombination rate variation in Chlamydomonas reinhardtii reveals effects of linked selection

Hasan, A. R.; Ness, R. W.

10.1101/340992 — evolutionary biology — Posted on 2018-11-05

2266 Single-cell transcriptome analysis of human, marmoset and mouse embryos reveals common and divergent features of preimplantation development

Boroviak, T.; Stirparo, G. G. G.; Dietmann, S.; Hernando-Herraez, I.; Mohammed, H.; Reik, W.; Smith, A.; Sasaki, E.; Nichols, J.; Bertone, P.

10.1101/385815 — developmental biology — Posted on 2018-11-05

2267 Limited significance of the in situ proximity ligation assay

Aslemarz, A.; Lasko, P.; Fagotto, F.

10.1101/411355 — cell biology — Posted on 2018-11-05

2268 The ecological cocktail party: Measuring brain activity during an auditory oddball task with background noise

Scanlon, J. E. M.; Cormier, D. L.; Townsend, K. A.; Kuziek, J. W. P.; Mathewson, K. E.

10.1101/371435 — neuroscience — Posted on 2018-11-05

2269 Costimulation through TLR2 drives polyfunctional CD8+ T cell responses

Salerno, F.; Freen-van Heeren, J. J.; Guislain, A.; Nicolet, B. P.; Wolkers, M.

10.1101/375840 — immunology — Posted on 2018-11-05

2270 Cryo-EM structures reveal bilayer remodeling during Ca2+ activation of a TMEM16 scramblase

Falzone, M. E.; Rheinberger, J.; Lee, B.-C.; Peyear, T.; Sasset, L.; Raczkowski, A.; Eng, E.; Di Lorenzo, A.; Andersen, O. S.; Nimigean, C. M.; Accardi, A.

10.1101/420174 — biochemistry — Posted on 2018-11-05

2271 Iso-Seq allows genome-independent transcriptome profiling of grape berry development

Minio, A.; Massonnet, M.; Vondras, A.; Figueroa-Balderas, R.; Blanco-Ulate, B.; Cantu, D.

10.1101/269530 — genomics — Posted on 2018-11-05

2272 A Likelihood-Free Inference Framework for Population Genetic Data using Exchangeable Neural Networks

Chan, J.; Perrone, V.; Spence, J. P.; Jenkins, P. A.; Mathieson, S.; Song, Y. S.

10.1101/267211 — evolutionary biology — Posted on 2018-11-05

2273 Population structure promotes the evolution of costly sex in artificial gene networks

Whitlock, A. O. B.; Azevedo, R. B.; Burch, C. L.

10.1101/333377 — evolutionary biology — Posted on 2018-11-05

2274 Refinement of highly flexible protein structures using simulation-guided spectroscopy

Hays, J. M.; Kieber, M. K.; Li, J. Z.; Han, J. I.; Columbus, L.; Kasson, P. M.

10.1101/319335 — bioinformatics — Posted on 2018-11-05

2275 An updated phylogeny of the Alphaproteobacteria reveals that the Rickettsiales and Holosporales have independent origins

Munoz-Gomez, S.; Hess, S.; Burger, G.; Lang, B. F.; Susko, E.; Slamovits, C. H.; Roger, A. J.

10.1101/462648 — evolutionary biology — Posted on 2018-11-05

2276 Investigating causal relationships between sleep traits and risk of breast cancer: a Mendelian randomization study

Richmond, R. C.; Anderson, E. L.; Dashti, H. S.; Jones, S. E.; Lane, J. M.; Strand, L. B.; Brumpton, B.; Rutter, M.; Wood, A. R.; Relton, C. L.; Munafo, M. R.; Frayling, T. M.; Martin, R. M.; Saxena, R.; Weedon, M. N.; Lawlor, D. A.; Davey Smith, G.

10.1101/457572 — epidemiology — Posted on 2018-11-05

2277 Inferring biochemical reactions and metabolite structures to cope with metabolic pathway drift

Belcour, A.; Girard, J.; Aite, M.; Delage, L.; Trottier, C.; Marteau, C.; Leroux, C.; Dittami, S. M.; Sauleau, P.; Corre, E.; Nicolas, J.; Boyen, C.; Leblanc, C.; Collen, J.; Siegel, A.; Markov, G.

10.1101/462556 — systems biology — Posted on 2018-11-05

2278 Activity-dependent production of ATP and ROS in mitochondria of myelinated axons in healthy and neuropathic conditions

Van Hameren, G.; Campbell, G.; Deck, M.; Berthelot, J.; Chrast, R.; Tricaud, N.

10.1101/462523 — neuroscience — Posted on 2018-11-05

2279 Comprehensive profiling of antibodies against multiple infectious diseases in serum and the airway mucosa using synthetic peptide-based linear epitope microarrays

Sande, C. J.; Chege, T.; Mutunga, M. N.; Gicheru, E.; Nokes, D. J.; Green, C. A.; Tuju, J.

10.1101/462689 — immunology — Posted on 2018-11-05

2280 mtDNA recombination indicative of hybridization suggest a role of the mitogenome in the adaptation of reef building corals to extreme environments

Banguera-Hinestroza, E.; Sawall, Y.; Al-Sofyani, A.; Mardulyn, P.; Fuertes-Aguilar, J.; Cardenas-Henao, H.; Jimenez-Infante, F.; Voolstra, C. R.; Flot, J.-F.

10.1101/462069 — evolutionary biology — Posted on 2018-11-05

2281 Transcriptomic response to divergent selection for flowering time in maize reveals convergence and key players of the underlying gene regulatory network

Tenaillon, M. I.; Seddiki, K.; Mollion, M.; Le Guilloux, M.; Marchadier, E.; Ressayre, A.; Dillmann, C.

10.1101/461947 — plant biology — Posted on 2018-11-05

2282 Retinal microvasculature and cerebral small vessel disease in the Lothian Birth Cohort 1936 and Mild Stroke Study

McGrory, S.; Ballerini, L.; Doubal, F. N. D.; Staals, J.; Allerhand, M.; del C. Valdes-Hernandez, M.; Wang, X.; MacGillivray, T. J.; Doney, A. S. F.; Dhillon, B.; Starr, J. M.; Bastin, M. E.; Trucco, E.; Deary, I. J.; Wardlaw, J. M.

10.1101/462507 — neuroscience — Posted on 2018-11-05

2283 PSL-Recommender: Protein Subcellular Localization Prediction using Recommender System

Jamali, R.; Eslahchi, C.; Jahangiri-Tazehkand, S.

10.1101/462812 — bioinformatics — Posted on 2018-11-05

2284 Developing and Evaluating Mappings of ICD-10 and ICD-10-CM codes to Phecodes

Wu, P.; Gifford, A.; Meng, X.; Li, X.; Campbell, H.; Varley, T.; Zhao, J.; Bastarache, L.; Denny, J. C.; Theodoratou, E.; Wei, W.-Q.

10.1101/462077 — bioinformatics — Posted on 2018-11-05

2285 A sequence-based approach for identifying protein fold switchers

Mishra, S.; Looger, L.; Porter, L.

10.1101/462606 — bioinformatics — Posted on 2018-11-05

2286 Impact of genetic variations on the human brain: when and where?

Vervier, K.; Brueggeman, L.; Michaelson, J.

10.1101/461814 — bioinformatics — Posted on 2018-11-05

2287 Label-Free Density-Based Detection of Adipocytes of Bone Marrow Origin Using Magnetic Levitation

Sarigil, O.; Anıl-Inevi, M.; Mese, G.; Tekin, H. C.; Ozcivici, E.

10.1101/462002 — bioengineering — Posted on 2018-11-05

2288 Magnetoelectric materials for miniature, wireless neural stimulation at therapeutic frequencies

Wickens, A.; Avants, B.; Verma, N.; Lewis, E.; Chen, J. C.; Feldman, A. K.; Dutta, S.; Chu, J.; O'Malley, J.; Beierlein, M.; Kemere, C.; Robinson, J. T.

10.1101/461855 — bioengineering — Posted on 2018-11-05

2289 Large Anoura (Chiroptera:Glossophaginae) taxonomy, taxonomic status of Anoura carishina, and implications for the distribution of Anoura latidens in Colombia.

Calderon-Acevedo, C. A.; Rodriguez-Posada, M. E.; Muchhala, N.

10.1101/462051 — zoology — Posted on 2018-11-05

2290 The Time Course of Ineffective Sham Blinding During 1mA tDCS

Greinacher, R.; Buhot, L.; Möller, L.; Learmonth, G.

10.1101/462424 — neuroscience — Posted on 2018-11-05

2291 Using transcriptome sequencing and pooled exome capture to study local adaptation in the giga-genome of Pinus cembra

Rellstab, C.; Dauphin, B.; Zoller, S.; Brodbeck, S.; Gugerli, F.

10.1101/462630 — genomics — Posted on 2018-11-05

2292 The shape of a defense-growth trade-off governs seasonal trait dynamics in natural phytoplankton

Ehrlich, E.; Kath, N. J.; Gaedke, U.

10.1101/462622 — ecology — Posted on 2018-11-05

2293 Periodically driven force protein translocation through a α-hemolysin biological nano-pore

Shahzad, M. A.

10.1101/462614 — bioinformatics — Posted on 2018-11-05

2294 FRACTIONAL DELETION OF COMPOUND KUSHEN INJECTION, A NATURAL COMPOUND MIXTURE, INDICATES CYTOKINE SIGNALING PATHWAYS ARE CRITICAL FOR ITS PERTURBATION OF THE CELL CYCLE.

Aung, T. N.; Nourmohammadi, S.; Qu, Z.; Harata-Lee, Y.; Cui, J.; Shen, H.; Yool, A. J.; Pukala, T.; Du, H.; Kortschak, D.; Adelson, D. L.

10.1101/462135 — pharmacology and toxicology — Posted on 2018-11-05

2295 The Brain-Derived Neurotrophic Factor Val66Met Genotype Does Not Influence the Grey or White Matter Structures Underlying Recognition Memory

McKay, N. S.; Moreau, D.; Henare, D. T.; Kirk, I. J.

10.1101/461731 — neuroscience — Posted on 2018-11-05

2296 Introducing double bouquet cells into a modular cortical associative memory model

Chrysanthidis, N.; Fiebig, F.; Lansner, A.

10.1101/462010 — neuroscience — Posted on 2018-11-05

2297 Reversing Abnormal Neural Development by Inhibiting OLIG2 in Down Syndrome Human iPSC Brain Organoids and Neuronal Mouse Chimeras

Xu, R.; Brawner, A.; Li, S.; Kim, H.; Xue, H.; Pang, Z.; Kim, W.-Y.; Hart, R.; Liu, Y.; Jiang, P.

10.1101/462739 — neuroscience — Posted on 2018-11-05

2298 TAPBPR mediates peptide dissociation from MHC class I using a leucine lever

Ilca, F. T.; Neerincx, A.; Hermann, C.; Marcu, A.; Stevanovic, S.; Deane, J. E.; Boyle, L. H.

10.1101/462432 — immunology — Posted on 2018-11-05

2299 Comparative analysis of sequencing technologies platforms for single-cell transcriptomics

Natarajan, K. N.; Miao, Z.; Jiang, M.; Huang, X.; Zhou, H.; Xie, J.; Wang, C.; Qin, S.; Zhao, Z.; Wu, L.; Li, B.; Hou, Y.; Liu, S.; Teichmann, S.

10.1101/463117 — genomics — Posted on 2018-11-05

2300 Pan-cancer analysis on microRNA-mediated gene activation

Tan, H.; Huang, S.; Zhang, Z.; Qian, X.; Sun, P.; Zhou, X.

10.1101/462960 — bioinformatics — Posted on 2018-11-05

2301 High accuracy protein structures from minimal sparse paramagnetic solid-state NMR restraints

Perez, A.; Gaalswyk, K.; Jaroniec, C.; MacCallum, J.

10.1101/463158 — biochemistry — Posted on 2018-11-05

2302 Pectin digestion in herbivorous beetles: Impact of pseudoenzymes exceeds that of their active counterparts

Kirsch, R.; Kunert, G.; Vogel, H.; Pauchet, Y.

10.1101/462531 — physiology — Posted on 2018-11-05

2303 31° South: phenotypic flexibility in adaptive thermogenesis among conspecific populations of an arid-endemic bird - from organismal to cellular level

Ribeiro, A. M.; Prats, C.; Pattinson, N. B.; Gilbert, M. T. P.; Smit, B.

10.1101/461871 — physiology — Posted on 2018-11-05

2304 Dynamic Electrical Stimulation of Sites in Visual Cortex Produces Form Vision in Sighted and Blind Humans

Beauchamp, M. S.; Bosking, W.; Sun, P.; Foster, B.; Niketeghad, S.; Pouratian, N.; Yoshor, D.

10.1101/462697 — neuroscience — Posted on 2018-11-05

2305 Human brain activity during mental imagery exhibits signatures of inference in a hierarchical generative model

Breedlove, J. L.; St-Yves, G.; Olman, C. A.; Naselaris, T.

10.1101/462226 — neuroscience — Posted on 2018-11-05

2306 FMRP association with and regulation of Fragile X granules exhibit circuit-dependent requirements for the KH2 RNA binding domain

Gingrich, E. C.; Shepard, K. A.; Mitchell, M. E.; Sawicka, K.; Darnell, J. C.; Akins, M. R.

10.1101/462168 — neuroscience — Posted on 2018-11-05

2307 Characterization and elimination of stochastically generated persister subpopulation in mycobacteria

Srinivas, V.; Arrieta-Ortiz, M.; Peterson, E. J. R.; Baliga, N. S.

10.1101/463232 — microbiology — Posted on 2018-11-05

2308 Nonsynonymous A-to-I RNA editing contributes to burden of deleterious missense variants in healthy individuals

Mai, T.-L.; Chuang, T.-J.

10.1101/462390 — evolutionary biology — Posted on 2018-11-05

2309 How does genome size affect the evolution of pollen tube growth rate, a haploid performance trait?

Reese, J. B.; Williams, J.

10.1101/462663 — evolutionary biology — Posted on 2018-11-05

2310 Exploring neighborhoods in large metagenome assembly graphs reveals hidden sequence diversity

Brown, C. T.; Moritz, D.; O'Brien, M.; Reidl, F.; Reiter, T.; Sullivan, B.

10.1101/462788 — bioinformatics — Posted on 2018-11-05

2311 The unstructured linker arms of MutL enable GATC site incision beyond roadblocks during initiation of DNA mismatch repair

Mardenborough, Y. S.; Nitsenko, K.; Laffeber, C.; Duboc, C.; Sahin, E.; Quessada-Vial, A.; Winterwerp, H. H.; Sixma, T. K.; Kanaar, R.; Friedhoff, P.; Strick, T. R.; Lebbink, J. H.

10.1101/463133 — biochemistry — Posted on 2018-11-05

2312 Nitric oxide is important for sensing and survival under hypoxia in Arabidopsis

WANY, A.; GUPTA, A. K.; BROTMAN, Y.; PANDEY, S.; VISHWAKARMA, A. P.; KUMARI, A.; SINGH, P.; PATHAK, P. K.; IGAMBERDIEV, A. U.; GUPTA, K. J.

10.1101/462218 — plant biology — Posted on 2018-11-05

2313 Drug prescription pattern in European neonatal units

Mesek, I.; Nellis, G.; Lass, J.; Metsvaht, T.; Varendi, H.; Visk, H.; Turner, M. A.; Nunn, A. J.; Duncan, J.; Lutsar, I.

10.1101/463240 — pharmacology and toxicology — Posted on 2018-11-05

2314 Emotionotopy: Gradients encode emotion dimensions in right temporo-parietal territories

Lettieri, G.; Handjaras, G.; Ricciardi, E.; Leo, A.; Papale, P.; Betta, M.; Pietrini, P.; Cecchetti, L.

10.1101/463166 — neuroscience — Posted on 2018-11-05

2315 Stress-induced neuron remodeling reveals differential interplay between neurexin and environmental factors

Hart, M. P.

10.1101/462796 — neuroscience — Posted on 2018-11-05

2316 eIF2B activator prevents neurological defects caused by a chronic Integrated Stress Response

Wong, Y. L.; LeBon, L.; Basso, A. M.; Kohlhaas, K. L.; Nikkel, A. L.; Robb, H. M.; Donnelly-Roberts, D. L.; Prakash, J.; Swensen, A. M.; Rubinstein, N. D.; Krishnan, S.; McAllister, F. E.; Haste, N. V.; O'Brien, J. J.; Frost, J. M.; Shi, L.; Riedmaier, S.; Martin, K.; Dart, M. J.; Sidrauski, C.

10.1101/462820 — neuroscience — Posted on 2018-11-05

2317 Subthalamic nucleus and sensorimotor cortex activity during speech production

Chrabaszcz, A.; Neumann, W. J.; Stretcu, O.; Lipski, W. J.; Bush, A.; Dastolfo-Hromack, C.; Wang, D.; Crammond, D. J.; Shaiman, S.; Dickey, M. W.; Holt, L. L.; Turner, R. S.; Fiez, J. A.; Richardson, R. M.

10.1101/463141 — neuroscience — Posted on 2018-11-05

2318 Individualised MRI training for paediatric neuroimaging in autism spectrum disorders: A child-focused approach

Pua, E. P. K.; Barton, S.; Williams, K.; Craig, J. M.; Seal, M.

10.1101/462234 — neuroscience — Posted on 2018-11-05

2319 A comparison of Alberta’s Infant Motor Scale and Brazelton Neonatal Behavior Assessment Scale

Perera, P.; Godamunne, P.; Nandasena, S.; Tipre, M.; Wimalasiri, U.; Leader, M.; Beddage, T.; Smith, T.; Kasturiratne, A.; Sathiakumar, N.; Wickremesighe, R.

10.1101/462572 — neuroscience — Posted on 2018-11-05

2320 Sulfur reduction coupling with anaerobic ammonium oxidation power the origin of life

Bao, P.; Li, G.-X.; Li, H.

10.1101/461707 — microbiology — Posted on 2018-11-05

2321 A highly divergent picornavirus infecting the gut epithelia of zebrafish (Danio rerio) in research institutions world-wide

Altan, E.; Kubiski, S. V.; Boros, A.; Reuter, G.; Sadeghi, M.; Deng, X.; Creighton, E. K.; Crim, M. J.; Delwart, E.

10.1101/463083 — microbiology — Posted on 2018-11-05

2322 The invisibility cloak: Chitin binding protein of Verticillium nonalfalfae disguises fungus from plant chitinases

Volk, H.; Marton, K.; Flajsman, M.; Radisek, S.; Hein, I.; Podlipnik, C.; Javornik, B.; Berne, S.

10.1101/462499 — microbiology — Posted on 2018-11-05

2323 Food web interaction strength distributions are conserved by greater variation between than within predator-prey pairs

Preston, D.; Falke, L.; Henderson, J.; Novak, M.

10.1101/461921 — ecology — Posted on 2018-11-05

2324 Differential gene expression supports a resource-intensive, defensive role for colony production in the bloom-forming haptophyte, Phaeocystis globosa

Mars Brisbin, M.; Mitarai, S.

10.1101/461756 — ecology — Posted on 2018-11-05

2325 species2vec: A novel method for species representation

Angelov, B.

10.1101/461996 — ecology — Posted on 2018-11-05

2326 Iron deficiency affects early stages of embryonic hematopoiesis but not the endothelial to hematopoietic transition

Shvartsman, M.; Bilican, S.; Lancrin, C.

10.1101/462978 — developmental biology — Posted on 2018-11-05

2327 Macrophage Released Pyrimidines Inhibit Gemcitabine Therapy in Pancreatic Cancer

Halbrook, C. J.; Pontious, C.; Lee, H.-J.; Kovalenko, I.; Zhang, Y.; Lapienyte, L.; Dreyer, S.; Kremer, D. M.; Sajjakulnukit, P.; Zhang, L.; Nelson, B.; Hong, H.; Kemp, S.; Chang, D.; Biankin, A.; Crawford, H. C.; Morton, J. P.; Pasca di Magliano, M.; Lyssiotis, C. A.

10.1101/463125 — cancer biology — Posted on 2018-11-05

2328 PREMONition: An algorithm for predicting the circadian clock-regulated molecular network

Bosman, J.; Zeng, C.; Laing, E.; Merrow, M.

10.1101/463190 — bioinformatics — Posted on 2018-11-05

2329 Towards a post-clustering test for differential expression

Zhang, J. M.; Kamath, G. M.; Tse, D. N.

10.1101/463265 — bioinformatics — Posted on 2018-11-05

2330 Effects of childhood maltreatment on social cognition and brain functional connectivity in borderline personality disorder patients

Duque, X.; Alcala-Lozano, R.; Gonzalez-Olvera, J. J.; Garza-Villarreal, E. A.; Pellicer, F.

10.1101/461087 — neuroscience — Posted on 2018-11-05

2331 Spike: A GPU Optimised Spiking Neural Network Simulator

Ahmad, N.; Isbister, J. B.; Smithe, T. S. C.; Stringer, S. M.

10.1101/461160 — neuroscience — Posted on 2018-11-05

2332 Inter-organ growth coordination is mediated by the Xrp1/Dilp8 axis in Drosophila

Boulan, L.; Andersen, D.; Colombani, J.; Boone, E.; Leopold, P.

10.1101/462473 — developmental biology — Posted on 2018-11-05

2333 Transplantation of human pluripotent stem cells overexpressing insulin/ERRγ can efficiently decrease the HbA1c levels of type 2 diabetes patient (Case #2-A)

Wang, T.; Chen, X.; Cui, X.; Zhao, L.; Yang, Z.; Wang, X.; Zhang, B.; Fan, M.; Shi, X.; Li, R.; Fang, Q.; Diao, X.; Zhang, L.; Yang, G.; Meng, Y.; Fan, S.; Yang, G.; An, L.; Zhang, G.

10.1101/462127 — cell biology — Posted on 2018-11-05

2334 Statistical Mechanical Prediction of Ligand Perturbation to RNA Secondary Structure and Application to the SAM-I Riboswitch

Alaidi, O.; Aboul-ela, F.

10.1101/461749 — biophysics — Posted on 2018-11-05

2335 High levels of antibiotic resistance gene expression among birds living in a wastewater treatment plant

Rossetto Marcelino, V.; Wille, M.; Hurt, A. C.; Gonzalez-Acuna, D.; Klaassen, M.; Eden, J.-S.; Shi, M.; Iredell, J. R.; Sorrell, T. C.; Holmes, E. C.

10.1101/462366 — ecology — Posted on 2018-11-05

2336 Prolonged quiescence delays somatic stem cell-like division in Caenorhabditis elegans and is controlled by insulin signalling

Olmedo, M.; Mata Cabana, A.; Rodriguez Palero, M. J.; Garcia-Sanchez, S.; Fernandez Yanez, A.; Merrow, M.; Artal-Sanz, M.

10.1101/462713 — developmental biology — Posted on 2018-11-05

2337 Vector analysis of steerable mechanical tension across nuclear lamina

Chen, T.; Wu, H.; Wang, Y.; Shan, J.; Zhang, J.; Zhao, H.; Guo, J.

10.1101/462275 — cell biology — Posted on 2018-11-05

2338 Structure and function of a bacterial gap junction analog

Weiss, G. L.; Kieninger, A.-K.; Maldener, I.; Forchhammer, K.; Pilhofer, M.

10.1101/462465 — cell biology — Posted on 2018-11-05

2339 Spectroscopic study on binding of cationic Pheophorbide-a to antiparallel quadruplex Tel22

Ryazanova, O. A.; Zozulya, V. N.; Voloshin, I. M.; Glamazda, A. Y.; Dubey, I. Y.; Dubey, L. V.; Karachevtsev, V. A.

10.1101/462291 — biophysics — Posted on 2018-11-05

2340 Quantitative mapping of triacylglycerol chain length and saturation using broadband CARS microscopy

Paul, A.; Wang, Y.; Brännmark, C.; Kumar, S.; Bonn, M.; Parekh, S.

10.1101/463000 — bioengineering — Posted on 2018-11-05

2341 Stable and Reversible Functionalization of the Native Phosphate Groups on Live Cells

Majumder, J.; Chopra, G.

10.1101/462044 — bioengineering — Posted on 2018-11-05

2342 Resistance from Afar: Distal Mutation V36M Allosterically Modulates the Active Site to Accentuate Drug Resistance in HCV NS3/4A Protease

Ozen, A.; Lin, K.-H.; Romano, K. P.; Tavella, D.; Newton, A.; Petropoulos, C. J.; Kuang, W.; Aydin, C.; Schiffer, C.

10.1101/452284 — molecular biology — Posted on 2018-11-05

2343 Retinoic acid and androgens interact to regulate spermatogenesis in a non-mammalian vertebrate lacking stra8

Crespo, D.; Assis, L. H. C.; van de Kant, H. J. G.; de Waard, S.; Safian, D. A.; Lemos, M. S.; Bogerd, J.; Schulz, R. W.

10.1101/462408 — developmental biology — Posted on 2018-11-05

2344 A new family of neural wiring receptors across bilaterians defined by phylogenetic, biochemical and structural evidence

Cheng, S.; Park, Y.; Kurleto, J. D.; Jeon, M.; Zinn, K.; Thornton, J. W.; Özkan, E.

10.1101/462036 — biochemistry — Posted on 2018-11-05

2345 The GTPase Nog1 couples polypeptide exit tunnel quality control with ribosomal stalk assembly

Nerurkar, P.; Gillet, L.; Pena, C.; Schubert, O. T.; Altvater, M.; Chang, Y.; Aebersold, R.; Panse, V.

10.1101/462333 — biochemistry — Posted on 2018-11-05

2346 Drift and directional selection are the evolutionary forces driving gene expression divergence in eye and brain tissue of Heliconius butterflies

Catalan, A.; Höhna, S.; Briscoe, A. D.

10.1101/463174 — evolutionary biology — Posted on 2018-11-05

2347 Destin: toolkit for single-cell analysis of chromatin accessibility

Urrutia, E.; Chen, L.; Zhou, H.; Jiang, Y.

10.1101/461905 — bioinformatics — Posted on 2018-11-05

2348 Refolding activity of bacterial Hsp90 in vivo reveals ancient chaperoning function

Moran Luengo, T.; Ahlnas, T.; Hoekstra, A. T.; Berkers, C. R.; Mayer, M. P.; Rudiger, S. G. D.

10.1101/462549 — biochemistry — Posted on 2018-11-05

2349 tartan underlies the evolution of male genital morphology

Hagen, J. F. D.; Mendes, C. C.; Tanaka, K. M.; Gaspar, P.; Kittelmann, M.; McGregor, A. P.; Nunes, M. D. S.

10.1101/462259 — evolutionary biology — Posted on 2018-11-05

2350 TransgeneR: a one-stop tool for transgene integration and rearrangement discovery using sequencing data

Meng, G.

10.1101/462267 — bioinformatics — Posted on 2018-11-05

2351 Limited differential expression of miRNAs and other small RNAs in LPS-stimulated human monocytes

Lu, D.; Yamawaki, T.; Zhou, H.; Chou, W.-Y.; Chhoa, M.; Lamas, E.; Escobar, S. S.; Arnett, H. A.; Ge, H.; Wang, S.; Li, C.-M.

10.1101/461277 — genomics — Posted on 2018-11-05

2352 Comparison of three variant callers for human whole genome sequencing

Supernat, A.; Vidarsson, O. V.; Steen, V. M.; Stokowy, T.

10.1101/461798 — genomics — Posted on 2018-11-05

2353 High resolution protein-protein interaction mapping using all-versus-all sequencing (AVA-seq)

Andrews, S. S.; Ramadan, S.; Al-Thani, N. M.; Ahmed, I.; Mohamoud, Y. A.; Malek, J.

10.1101/462309 — genomics — Posted on 2018-11-05

2354 In Silico Analysis of Non Synonymous Single Nucleotide Polymorphisms (nsSNPs) of SMPX Gene in Hearing Impairment

Arifuzzaman, M.; Mitra, S.; Hamza, A.; Das, R.; Absar, N.; Dash, R.

10.1101/461764 — bioinformatics — Posted on 2018-11-05

2355 Real-time projections of epidemic transmission and estimation of vaccination impact during an Ebola virus disease outbreak in the Eastern region of the Democratic Republic of Congo

Worden, L.; Wannier, R.; Hoff, N. A.; Musene, K.; Selo, B.; Mossoko, M.; Okitolonda-Wemakoy, E.; Muyembe-Tamfum, J. J.; Rutherford, G.; Lietman, T. M.; Rimoin, A. W.; Porco, T. C.; Kelly, J. D.

10.1101/461285 — epidemiology — Posted on 2018-11-05

2356 Molecular basis of Cul3 ubiquitin ligase subversion by vaccinia virus protein A55

Gao, C.; Pallett, M. A.; Croll, T. I.; Smith, G. L.; Graham, S. C.

10.1101/461806 — biochemistry — Posted on 2018-11-05

2357 Enabling Precision Medicine via standard communication of NGS provenance, analysis, and results

Alterovitz, G.; Dean, D. A.; Goble, C.; Crusoe, M. R.; Soiland-Reyes, S.; Bell, A.; Hayes, A.; Suresh, A.; Purkayastha, A.; King, C. H. H.; Taylor, D.; Johanson, E.; Thompson, E. E.; Donaldson, E.; Morizono, H.; Tsang, H.; Vora, J. K.; Goecks, J.; Yao, J.; Almeida, J. S.; Keeney, J.; Addepalli, K.; Krampis, K.; Smith, K.; Guo, L.; Walderhaug, M.; Schito, M.; Ezewudo, M.; Guimera, N.; Walsh, P.; Kahsay, R.; Gottipati, S.; Rodwell, T. C.; Bloom, T.; Lai, Y.; Simonyan, V.; Mazumder, R.

10.1101/191783 — scientific communication and education — Posted on 2018-11-05

2358 No evidence that inbreeding avoidance is up-regulated during the ovulatory phase of the menstrual cycle

Holzleitner, I. J.; Hahn, A. C.; Lee, A. J.; O'Shea, K. J.; Jones, B. C.; DeBruine, L. M.

10.1101/192054 — animal behavior and cognition — Posted on 2018-11-05

2359 Deep convolutional models improve predictions of macaque V1 responses to natural images

Cadena, S. A.; Denfield, G. H.; Walker, E. Y.; Gatys, L. A.; Tolias, A. S.; Bethge, M.; Ecker, A. S.

10.1101/201764 — neuroscience — Posted on 2018-11-05

2360 The WT1-BASP1 complex is required to maintain the differentiated state of taste receptor cells

Gao, Y.; Dutta Banik, D.; Roberts, S.; Medler, K.

10.1101/460816 — cell biology — Posted on 2018-11-05

2361 Human papillomavirus 16 E2 regulates keratinocyte gene expression relevant to cancer and the viral life cycle

Evans, M. R.; James, C. D.; Bristol, M.; Nulton, T. J.; Wang, X.; Kaur, N.; White, E. A.; Windle, B.; Morgan, I. M.

10.1101/461715 — molecular biology — Posted on 2018-11-05

2362 Intramolecular domain dynamics regulate synaptic MAGUK protein interactions

Rademacher, N.; Kuropka, B.; Kunde, S.-A.; Wahl, M. C.; Freund, C.; Shoichet, S. A.

10.1101/462358 — molecular biology — Posted on 2018-11-05

2363 Drugs in a curative combination therapy for lymphoma exhibit low cross-resistance but not pharmacological synergy

Palmer, A. C.; Chidley, C.; Sorger, P. K.

10.1101/462184 — cancer biology — Posted on 2018-11-05

2364 Timing Polymerase Pausing with TV-PRO-seq

Zhang, J.; Cavallaro, M.; Hebenstreit, D.

10.1101/461442 — systems biology — Posted on 2018-11-05

2365 Cannabinoid 1-Receptor regulation of deep and distributed subcellular processes enables neurite outgrowth

Hansen, J.; Yadaw, A. S.; Siddiq, M. M.; Tolentino, R.; Rabinovitch, V.; Liu, T.; Li, H.; Goldfarb, J.; Iyenagar, R.

10.1101/462200 — cell biology — Posted on 2018-11-05

2366 Fast, sensitive, and accurate integration of single cell data with Harmony

Korsunsky, I.; Fan, J.; Slowikowski, K.; Zhang, F.; Wei, K.; Baglaenko, Y.; Brenner, M.; Loh, P.-R.; Raychaudhuri, S.

10.1101/461954 — bioinformatics — Posted on 2018-11-05

Cardoso, M. M.; Lima, B.; Sirotin, Y. B.; Das, A.

10.1101/463042 — neuroscience — Posted on 2018-11-05

2368 Genetic variants related to antihypertensive targets inform drug efficacy and side effects

Gill, D.; Georgakis, M. K.; Koskeridis, F.; Jiang, L.; Feng, Q.; Wei, W.-Q.; Theodoratou, E.; Elliott, P.; Denny, J. C.; Malik, R.; Evangelou, E.; Dehghan, A.; Dichgans, M.; Tzoulaki, I.

10.1101/460543 — genetics — Posted on 2018-11-05

2369 STAT6 mRNA and protein knockdown using multiple siRNA sequences inhibits proliferation and induces apoptosis of the human colon adenocarcinoma cell line, HT-29

Salguero Aranda, C.; Sancho Mensat, D.; Sultan, S.; Reginald, A.; Chapman, L.

10.1101/462895 — cancer biology — Posted on 2018-11-05

2370 The spermidine acetyltransferase SpeG regulates transcription of the small RNA RprA

Hu, L. I.; Filippova, E. V.; Dang, J.; Pshenychnyi, S.; Ruan, J.; Kiryukhina, O.; Anderson, W. F.; Kuhn, M. L.; Wolfe, A.

10.1101/462937 — microbiology — Posted on 2018-11-05

2371 Characterization of oral microbiota in marmosets: feasibility of using the marmoset as a human oral disease model

Takehara, S.; Zeredo, J.; Kumei, Y.; Kagiyama, K.; Fukasawa, K.; Oshiro, A.; Ueno, M.; Minakuchi, S.; Kawaguchi, Y.

10.1101/462911 — microbiology — Posted on 2018-11-05

2372 Establishment and characteristic of an orthotopic implantation model of human hepatocellular carcinoma with Luc-GFP-labeled in nude mice

Ma, Y.; Zhang, J.-j.; Xu, M.-h.; Wang, J.; Jin, X.-b.

10.1101/462887 — cancer biology — Posted on 2018-11-05

2373 A more physiological approach to lipid metabolism alterations in cancer: CRC-like organoids assessment

Cruz-Gil, S.; Sanchez-Martinez, R.; Wagner-Reguero, S.; Stange, D.; Schölch, S.; Werner, K.; Ramirez de Molina, A.

10.1101/462929 — cancer biology — Posted on 2018-11-05

2374 Bridging the translational gap: Implementation of multimodal small animal imaging strategies for tumor burden assessment in a co-clinical trial

Blocker, S. J.; Mowery, Y. M.; Holbrook, M. D.; Qi, Y.; Kirsch, D. G.; Johnson, G. A.; Badea, C. T.

10.1101/462861 — bioengineering — Posted on 2018-11-05

2375 Moisture adsorption isotherms and quality of seeds stored in conventional packaging materials and hermetic Super Bag

Afzal, I.; Bakhtavar, M.; Basra, S.

10.1101/463026 — plant biology — Posted on 2018-11-05

2376 Three decades of native bee biodiversity surveys at Pinnacles National Park highlight the importance of monitoring natural areas over time

Meiners, J.; Griswold, T. L.; Carril, O. M.

10.1101/462986 — ecology — Posted on 2018-11-05

2377 Dual metabolomic profiling uncovers Toxoplasma manipulation of the host metabolome and the discovery of a novel parasite metabolic capability

Olson, W. J.; Stevenson, D.; Amador-Noguez, D.; Knoll, L. J.

10.1101/463075 — microbiology — Posted on 2018-11-05

2378 Characterization of cefotaxime resistant Escherichia coli isolated from broiler farms in Ecuador

Vinueza-Burgos, C.; Ortega-Paredes, D.; Narvaez, C.; De Zutter, L.; Zurita, J.

10.1101/462994 — microbiology — Posted on 2018-11-05

2379 Serological proteomic screening and evaluation of a recombinant egg antigen for the diagnosis of low-intensity infections in endemic area in Brazil

Moraes, V.; Shollenberger, L. M.; Castro-Borges, W.; Rabello, A. L. T.; Harn, D. A.; Medeiros, L. C. S.; Jeremias, W. d. J.; Siqueira, L. M. V.; Pereira, C. S. S.; Pedrosa, M. L. C.; Almeida, N. B. F.; Almeida, A.; Lambertucci, J. R.; Carneiro, N. F. F.; Coelho, P. M. Z.; Grenfell, R. F. Q.

10.1101/463059 — immunology — Posted on 2018-11-05

2380 Fatty acid profiles in adipose tissues and liver differ between horses and ponies

Adolph, S.; Schedlbauer, C.; Blaue, D.; Schöniger, A.; Gittel, C.; Brehm, W.; Fuhrmann, H.; Vervuert, I.

10.1101/463018 — biochemistry — Posted on 2018-11-05

2381 Improved estimates for extinction probabilities and times to extinction for populations of tsetse (Glossina spp)

Kajunguri, D.; Are, E.; Hargrove, J. W.

10.1101/463067 — zoology — Posted on 2018-11-05

2382 Role of the Fourth Transmembrane Segment in TRAAK Channel Mechanosensitivity

Zhang, M.; Yao, F.; Pan, C.; Yan, Z.

10.1101/463034 — biophysics — Posted on 2018-11-05

2383 Neural mechanisms of perceptive and affective processing of body stimuli in Anorexia nervosa - are there developmental effects?

Horndasch, S.; Roesch, J.; Kratz, O.; Vogel, A.; Heinrich, H.; Graap, H.; Moll, G. H.; Doerfler, A.; Forster, C.

10.1101/462952 — neuroscience — Posted on 2018-11-05

2384 Pre-implantation genetic diagnosis for a family with Usher syndrome through targeted sequencing and haplotype analysis

Luo, H.; Chen, C.; Yang, Y.; Yuan, Y.; Wang, W.; Wu, R.; Zhang, Y.; Peng, Z.; Han, Y.; Jiang, L.; Yao, R.; An, X.; Zhang, W.; Le, Y.; Xiang, J.; Yi, N.; Huang, H.; Li, W.; Zhang, Y.; Sun, J.

10.1101/460378 — genetics — Posted on 2018-11-05

2385 Phylogeny of the Australian Solanum dioicum group using seven nuclear genes: testing Symons fruit and seed dispersal hypotheses

Martine, C. T.; Jordon-Thaden, I. E.; McDonnell, A. J.; Cantley, J. T.; Hayes, D. S.; Roche, M. D.; Frawley, E. S.; Gilman, I. S.; Tank, D. C.

10.1101/462945 — evolutionary biology — Posted on 2018-11-05

2386 eUTOPIA: Solution for omics data preprocessing and analysis

Marwah, V. S.; Scala, G.; Kinaret, P. A. S.; Serra, A.; Alenius, H.; Fortino, V.; Greco, D.

10.1101/462879 — bioinformatics — Posted on 2018-11-05

2387 Locating ligand binding sites in G-protein coupled receptors using combined information from docking and sequence conservation

Vidad, A. R.; Macaspac, S.; Ng, H. L.

10.1101/461681 — bioinformatics — Posted on 2018-11-05

2388 Integrated Stress Response Deregulation underlies Vanishing White Matter and is a target for therapy

Abbink, T. E. M.; Wisse, L. E.; Jaku, E.; Thiecke, M. J.; Voltolini-Gonzalez, D.; Fritsen, H.; Bobeldijk, S.; ter Braak, T. J.; Polder, E.; Postma, N. L.; Bugiani, M.; Struys, E. A.; Verheijen, M.; Straat, N.; van der Sluis, S.; Thomas, A. A. M.; Molenaar, D.; van der Knaap, M. S.

10.1101/460840 — neuroscience — Posted on 2018-11-05

2389 Intense and sustained pain reduces cortical responses to auditory stimuli: implications for the interpretation of Heterotopic Noxious Conditioning Stimulation in humans

Torta, D.; Jure, F.; Andersen, O.; Biurrun-Manresa, J.

10.1101/460576 — neuroscience — Posted on 2018-11-05

2390 Factors influencing knowledge and practice on helping babies breathe among skilled birth attendants in rural ares in lake zone in Tanzania

Mzurikwao, C. B.; Ng'weshemi, S.; Ernest, A.

10.1101/462903 — epidemiology — Posted on 2018-11-05

2391 A comprehensive analysis of single-cell transcriptome network underlying gastric premalignant lesions and early gastric cancer

Peng, Z.; Mingran, Y.; Yiding, Z.; Shuai, X.; Xinxing, L.; Aidi, T.; Shao, L.

10.1101/455121 — bioinformatics — Posted on 2018-11-05

2392 Perceiving Hesitation requires both the Motor and Mentalizing systems

Thioux, M.; Suttrup, J.; Keysers, C.

10.1101/454298 — neuroscience — Posted on 2018-11-05

2393 53BP1 nuclear body-marked replication stress in a human mammary cell model of BRCA2 deficiency

Feng, W.; Jasin, M.

10.1101/462119 — molecular biology — Posted on 2018-11-05

2394 The CspC pseudoprotease regulates germination of Clostridioides difficile spores in response to multiple environmental signals

Rohlfing, A. E.; Eckenroth, B. E.; Forster, E. R.; Kevorkian, Y.; Donnelly, M. L.; Benito de la Puebla, H.; Doublie, S.; Shen, A.

10.1101/461657 — microbiology — Posted on 2018-11-05

2395 Epigenome-wide meta-analysis of blood DNA methylation and its association with subcortical volumes: findings from the ENIGMA Epigenetics Working Group

Jia, T.; Chu, C.; Liu, Y.; van Dongen, J.; Armstrong, N. J.; Bastin, M. E.; Carrillo-Roa, T.; den Braber, A.; Harris, M.; Jansen, R.; Liu, J.; Luciano, M.; Ori, A. P. S.; Roiz Santianez, R.; Ruggeri, B.; Sarkisyan, D.; Shin, J.; Sungeun, K.; Tordesillas Gutierrez, D.; van't Ent, D.; Ames, D.; Artiges, E.; Bakalkin, G.; Banaschewski, T.; Bokde, A. L. W.; Brodaty, H.; Bromberg, U.; Brouwer, R.; Buchel, C.; Burke Quinlan, E.; Cahn, W.; de Zubicaray, G. I.; Ekstrom, T. J.; Flor, H.; Frohner, J. H.; Frouin, V.; Garavan, H.; Gowland, P.; Heinz, A.; Ittermann, B.; Jahanshad, N.; Jiang, J.; Kwok, J.

10.1101/460444 — genomics — Posted on 2018-11-05

2396 Deformed Alignment of Super-Resolution Images for Semi-flexible Structures in 3D

Shi, X.; Garcia, G.; Wang, Y.; Reiter, J. F.; Huang, B.

10.1101/461913 — bioengineering — Posted on 2018-11-05

2397 Slow transcriptional elongation causes embryonic lethality and perturbs kinetic coupling of long neural genes

Maslon, M. M.; Braunschweig, U.; Aitken, S.; Mann, A. R.; Kilanowski, F.; Hunter, C. J.; Blencowe, B. J.; Kornblihtt, A. R.; Adams, I. R.; Caceres, J. F.

10.1101/426577 — molecular biology — Posted on 2018-11-04

2398 Graph abstraction reconciles clustering with trajectory inference through a topology preserving map of single cells

Wolf, F. A.; Hamey, F.; Plass, M.; Solana, J.; Dahlin, J. S.; Gottgens, B.; Rajewsky, N.; Simon, L.; Theis, F. J.

10.1101/208819 — bioinformatics — Posted on 2018-11-04

2399 Neural Population Control via Deep Image Synthesis

Bashivan, P.; Kar, K.; DiCarlo, J.

10.1101/461525 — neuroscience — Posted on 2018-11-04

2400 In vitro characterization of the human segmentation clock

Diaz-Cuadros, M.; Wagner, D.; Budjan, C.; Hubaud, A.; Touboul, J.; Michaut, A.; Al Tanoury, Z.; Yoshioka-Kobayashi, K.; Niino, Y.; Kageyama, R.; Miyawaki, A.; Pourquie, O.

10.1101/461822 — developmental biology — Posted on 2018-11-04

2401 On the adaptive behavior of head-fixed flies navigating in two-dimensional, visual virtual reality

Haberkern, H.; Basnak, M. A.; Ahanonu, B.; Schauder, D.; Cohen, J. D.; Bolstad, M.; Bruns, C.; Jayaraman, V.

10.1101/462028 — animal behavior and cognition — Posted on 2018-11-04

2402 Cellular response to small molecules that selectively stall protein synthesis by the ribosome

Liaud, N.; Horlbeck, M. A.; Gilbert, L. A.; Gjoni, K.; Weissman, J. S.; Cate, J.

10.1101/461624 — systems biology — Posted on 2018-11-04

2403 Prefrontal cortical ChAT-VIP interneurons provide local excitation by cholinergic synaptic transmission and control attention

Obermayer, J.; Luchicchi, A.; De Kloet, S. F.; Terra, H.; Bruinsma, B.; Heistek, T. S.; Mnie-Filali, O.; Kortleven, C.; Kroon, T.; Jonker, A. J.; Khalil, A. J.; De Haan, R.; Goriounova, N. A.; Van den Berg, W. D. J.; De Kock, C. P. J.; Pattij, T.; Mansvelder, H.

10.1101/461723 — neuroscience — Posted on 2018-11-04

2404 Fast, sensitive, and flexible integration of single cell data with Harmony

Korsunsky, I.; Fan, J.; Slowikowski, K.; Zhang, F.; Wei, K.; Baglaenko, Y.; Brenner, M.; Loh, P.-R.; Raychaudhuri, S.

10.1101/461954 — bioinformatics — Posted on 2018-11-04

2405 Big DNA as a tool to dissect an age-related macular degeneration haplotype

Laurent, J. M.; Fu, X.; German, S.; Maurano, M. T.; Zhang, K.; Boeke, J. D.

10.1101/461251 — genetics — Posted on 2018-11-04

2406 One and Two Year Visual Outcomes from the Moorfields AMD Database - an Open Science Resource for the Study of Neovascular Age-related Macular Degeneration

Fasler, K.; Moraes, G.; Wagner, S.; Kortuem, K. U.; Chopra, R.; Faes, L.; Preston, G.; Pontikos, N.; Fu, D. J.; Patel, P.; Tufail, A.; Lee, A.; Balaskas, K.; Keane, P. A.

10.1101/450411 — epidemiology — Posted on 2018-11-04

2407 Maternal Pregnancy-Associated Circulating MicroRNA predictors of infant birth outcomes are Determinants of Placental Maturation

Tseng, A. M.; Mahnke, A. H.; Wells, A. B.; Salem, N. A.; Allan, A. M.; Roberts, V. H. J.; Newman, N.; Walter, N. A. R.; Kroenke, C. D.; Grant, K. A.; Akison, L. K.; Moritz, K. M.; Chambers, C. D.; Miranda, R. C.

10.1101/409854 — developmental biology — Posted on 2018-11-04

2408 Absolute quantification of translational regulation and burden using combined sequencing approaches

Gorochowski, T. E.; Chelysheva, I.; Eriksen, M.; Nair, P.; Pedersen, S.; Ignatova, Z.

10.1101/338939 — synthetic biology — Posted on 2018-11-04

2409 Recalibration of path integration in hippocampal place cells

Jayakumar, R. P.; Madhav, M. S.; Savelli, F.; Blair, H. T.; Cowan, N. J.; Knierim, J. J.

10.1101/319269 — neuroscience — Posted on 2018-11-04

2410 Convergent recruitment of life cycle regulators to direct sporophyte development in two eukaryotic supergroups

Cock, J. M.; Peters, A. F.; Bourdareau, S.; Peres, L.; Scornet, D.; Strittmatter, M.; Lipinska, A. P.; Yao, H.; Godfroy, O.; Montecinos, G. J.; Avia, K.; Macaisne, N.; Troadec, C.; Bendahmane, A.; Arun, A.; Coelho, S. M.

10.1101/460436 — plant biology — Posted on 2018-11-04

2411 Genome size variation and species diversity in salamanders

Sclavi, B.; Herrick, J.

10.1101/065425 — evolutionary biology — Posted on 2018-11-04

2412 Genome-wide strategies reveal target genes of Npas4l associated with cardiovascular development in zebrafish

Marass, M.; Beisaw, A.; Gerri, C.; Luzzani, F.; Fukuda, N.; Guenther, S.; Kuenne, C.; Reischauer, S.; Stainier, D.

10.1101/461988 — developmental biology — Posted on 2018-11-04

2413 Systematic identification of human SNPs affecting regulatory element activity

van Arensbergen, J.; Pagie, L.; FitzPatrick, V.; de Haas, M.; Baltissen, M.; Comoglio, F.; van der Weide, R.; Teunissen, H.; Vosa, U.; Franke, L.; de Wit, E.; Vermeulen, M.; Bussemaker, H.; van Steensel, B.

10.1101/460402 — genomics — Posted on 2018-11-04

2414 In vivo widefield calcium imaging of the mouse cortex for analysis of network connectivity in health and brain disease

Cramer, J. V.; Gesierich, B.; Roth, S.; Dichgans, M.; Duering, M.; Liesz, A.

10.1101/459941 — neuroscience — Posted on 2018-11-04

2415 Focus on the breath: Brain decoding reveals internal states of attention during meditation

Weng, H. Y.; Lewis-Peacock, J. A.; Hecht, F. M.; Uncapher, M.; Ziegler, D.; Farb, N. A.; Goldman, V.; Skinner, S.; Duncan, L. G.; Chao, M. T.; Gazzaley, A.

10.1101/461590 — neuroscience — Posted on 2018-11-04

2416 Inhibition of retrotransposition improves health and extends lifespan of SIRT6 knockout mice

Simon, M.; van Meter, M.; Ablaeva, J.; Ke, Z.; Gonzalez, R. S.; Taguchi, T.; De Cecco, M.; Leonova, K. I.; Kogan, V.; Helfand, S. L.; Neretti, N.; Roichman, A.; Cohen, H. Y.; Antoch, M.; Gudkov, A.; Sedivy, J. M.; Seluanov, A.; Gorbunova, V.

10.1101/460808 — molecular biology — Posted on 2018-11-04

2417 Co-culture and biogeography of Prochlorococcus and SAR11

Becker, J. W.; Hogle, S. L.; Rosendo, K.; Chisholm, S. W.

10.1101/460428 — microbiology — Posted on 2018-11-04

2418 Modulation of rpoS fitness by loss of cpdA activity during stationary-phase in Escherichia coli

Chib, S.; Seshasayee, A. S. N.

10.1101/460451 — microbiology — Posted on 2018-11-04

2419 Ultra-sensitive sequencing for cancer detection reveals progressive clonal selection in normal tissue over a century of human lifespan

Salk, J. J.; Loubet-Senear, K.; Maritschnegg, E.; Valentine, C. C.; Williams, L. N.; Horvat, R.; Vanderstichele, A.; Nachmanson, D.; Baker, K. T.; Emond, M. J.; Loter, E.; Soussi, T.; Loeb, L. A.; Zeillinger, R.; Speiser, P.; Risques, R. A.

10.1101/457291 — cancer biology — Posted on 2018-11-04

2420 Experience-specific anterograde amnesia: memory reacquisition deficit phenomenon and its characterization in the vertebrate learning model

Tiunova, A.; Bezryadnov, D.; Gaeva, D.; Solodovnikov, V.; Anokhin, K.

10.1101/461616 — neuroscience — Posted on 2018-11-04

2421 The Aryl Hydrocarbon Receptor senses the Henna pigment Lawsone and mediates Yin-Yang effects on skin homeostasis

Lozza, L.; Moura-Alves, P.; Domaszewska, T.; Lage Crespo, C.; Streata, I.; Kreuchwig, A.; Bechtle, M.; Klemm, M.; Zedler, U.; Ungureanu Bogdan, S.; Guhlich-Bornhof, U.; Koehler, A.-B.; Staeber, M.; Mollenkopf, H.-J.; Hurwitz, R.; Furkert, J.; Krause, G.; Weiner, J.; Jacinto, A.; Mihai, I.; Leite-de-Moraes, M.; Siebenhaar, F.; Maurer, M.; Kaufmann, S. H. E.

10.1101/459255 — cell biology — Posted on 2018-11-04

2422 Global analysis of N6-methyladenosine functions and its disease association using deep learning and network-based methods

Zhang, S.; Zhang, S.; Fan, X.; Meng, J.; Chen, Y.; Gao, S.; Huang, Y.

10.1101/461673 — bioinformatics — Posted on 2018-11-04

2423 Using Computer-vision and Machine Learning to Automate Facial Coding of Positive and Negative Affect Intensity

Haines, N.; Southward, M. W.; Cheavens, J. S.; Beauchaine, T.; Ahn, W.-Y.

10.1101/458380 — physiology — Posted on 2018-11-04

2424 Personalization of hybrid brain models from neuroimaging and electrophysiology data

Sanchez-Todo, R.; Salvador, R.; Santarnecchi, E.; Wendling, F.; Deco, G.; Ruffini, G.

10.1101/461350 — neuroscience — Posted on 2018-11-04

2425 Absence of pathogenic mutations in CD59 in chronic inflammatory demyelinating polyradiculoneuropathy.

Duchateau, L.; Martin-Aguilar, L.; Lleixa, C.; Cortese, A.; Dols-Icardo, O.; Cervera-Carles, L.; Pascual-Goni, E.; Diaz-Manera, J.; Calegari, I.; Franciotta, D.; Rojas-Garcia, R.; Illa, I.; Clarimon, J.; Querol, L.

10.1101/459917 — immunology — Posted on 2018-11-04

2426 Accurate sequence variant genotyping in cattle using variation-aware genome graphs

Crysnanto, D.; Wurmser, C.; Pausch, H.

10.1101/460345 — genomics — Posted on 2018-11-04

2427 Habitat loss and fragmentation increase realized predator-prey body size ratios

Hillaert, J.; Vandegehuchte, M. L.; Hovestadt, T.; Bonte, D.

10.1101/461376 — ecology — Posted on 2018-11-04

2428 SHARP: Single-cell RNA-seq Hyper-fast and Accurate Processing via Ensemble Random Projection

Wan, S.; Kim, J.; Won, K. J.

10.1101/461640 — bioinformatics — Posted on 2018-11-04

2429 Systems approaches provide new insights into Arabidopsis thaliana root growth under mineral nutrient limitation

Bouain, N.; Korte, A.; Satbhai, S. B.; Rhee, S. Y.; Busch, W.; Rouached, H.

10.1101/460360 — plant biology — Posted on 2018-11-04

2430 Multiple mechanisms link prestimulus neural oscillations to sensory responses

Iemi, L.; Busch, N. A.; Laudini, A.; Samaha, J.; Villringer, A.; Nikulin, V. V.

10.1101/461558 — neuroscience — Posted on 2018-11-04

2431 AUTOMAGIC: Standardized Preprocessing of Big EEG Data

Pedroni, A.; Bahreini, A.; Langer, N.

10.1101/460469 — neuroscience — Posted on 2018-11-04

2432 A novel olfactometer for efficient and flexible odorant delivery

Burton, S. D.; Wipfel, M.; Guo, M.; Eiting, T. P.; Wachowiak, M.

10.1101/461582 — neuroscience — Posted on 2018-11-04

2433 Virulence gene profiles and phylogeny of Shiga toxin-positive Escherichia coli strains isolated from FDA regulated foods during 2010-2017

Gonzalez-Escalona, N.; Kase, J.

10.1101/461327 — microbiology — Posted on 2018-11-04

2434 Fast and accurate shared segment detection and relatedness estimation in un-phased genetic data using TRUFFLE

Dimitromanolakis, A.; Paterson, A.; Sun, L.

10.1101/460915 — genomics — Posted on 2018-11-04

2435 Perturbations of transcription and gene expression-associated processes alter distribution of cell size values in Saccharomyces cerevisiae

Maitra, N.; Anandhakumar, J.; Blank, H. M.; Kaplan, C. D.; Polymenis, M.

10.1101/461210 — genetics — Posted on 2018-11-04

2436 NKX2.1 is critical for melanocortin neuron identity, hypothalamic Pomc expression and body weight

Orquera, D.; Tavella, M. B.; de Souza, F.; Nasif, S.; Low, M.; Rubinstein, M.

10.1101/460501 — genetics — Posted on 2018-11-04

2437 let-7 controls the transition to adulthood by releasing select transcriptional regulators from repression by LIN41

Aeschimann, F.; Neagu, A.; Rausch, M.; Grosshans, H.

10.1101/460352 — developmental biology — Posted on 2018-11-04

2438 Cytokit: A single-cell analysis toolkit for high dimensional fluorescent microscopy imaging

Czech, E.; Aksoy, B. A.; Aksoy, P.; Hammerbacher, J.

10.1101/460980 — bioinformatics — Posted on 2018-11-04

2439 Fibroblast activation protein enzyme deficiency prevents liver steatosis, insulin resistance and glucose intolerance and increases fibroblast growth factor-21 in diet induced obese mice

Chowdhury, S.; Song, S.; Zhang, H. E.; Wang, X. M.; Gall, M. G.; Yu, D. M.-T.; Lay, A. J.; Xiang, M. S.-W.; Evans, K. A.; Wetzel, S.; Liu, Y.; Yau, B.; Coppage, A. L.; Lo, L.; Stokes, R. A.; Hawthorne, W. J.; Cooney, G. J.; McLennan, S. V.; Gunton, J. E.; Bachovchin, W. W.; Turner, N.; Kebede, M. A.; McCaughan, G. W.; Twigg, S. M.; Gorrell, M. D.

10.1101/460279 — pathology — Posted on 2018-11-04

2440 Opto-activation of cortical somatostatin interneurons alleviates parkinsonian symptoms

Vandecasteele, M.; Valverde, S.; Piette, C.; Gangarossa, G.; Derousseaux, W.; Aristieta Arbelaiz, A.; Touboul, J.; Degos, B.; Venance, L.

10.1101/460535 — neuroscience — Posted on 2018-11-04

2441 NeuroRoots, a bio-inspired, seamless Brain Machine Interface device for long-term recording.

Ferro, M. D.; Proctor, C. M.; Gonzalez, A.; Zhao, E.; Slezia, A.; Pas, J.; Dijk, G.; Donahue, M. J.; Williamson, A.; Malliaras, G. G.; Giocomo, L.; Melosh, N. A.

10.1101/460949 — neuroscience — Posted on 2018-11-04

2442 Regulatory mechanisms for the axonal localization of tau in neurons

Iwata, M.; Watanabe, S.; Yamane, A.; Miyasaka, T.; Misonou, H.

10.1101/456608 — neuroscience — Posted on 2018-11-04

2443 Family-based quantitative trait meta-analysis implicates rare noncoding variants in DENND1A in pathogenesis of polycystic ovary syndrome

Dapas, M.; Sisk, R.; Legro, R. S.; Urbanek, M.; Dunaif, A.; Hayes, M. G.

10.1101/460972 — genomics — Posted on 2018-11-04

2444 AVADA Enables Automated Genetic Variant Curation Directly from the Full Text Literature

Birgmeier, J.; Tierno, A. P.; Stenson, P. D.; Deisseroth, C. A.; Jagadeesh, K. A.; Cooper, D. N.; Bernstein, J. A.; Haeussler, M.; Bejerano, G.

10.1101/461269 — genetics — Posted on 2018-11-04

2445 Oxytocin and Vasopressin Receptor variants as a window onto the evolution of human prosociality

Theofanopoulou, C.; Andirko, A.; Boeckx, C.

10.1101/460584 — genetics — Posted on 2018-11-04

2446 Big DNA as a tool to dissect an age-related macular degeneration haplotype

Laurent, J.; Fu, X.; German, S.; Maurano, M. T.; Zhang, K.; Boeke, J. D.

10.1101/461251 — genetics — Posted on 2018-11-04

2447 Functional heterogeneity within the developing zebrafish epicardium

Weinberger, M.; Simoes, F. C.; Patient, R.; Sauka-Spengler, T.; Riley, P. R.

10.1101/460394 — developmental biology — Posted on 2018-11-04

2448 The WT1-BASP1 complex is required to maintain the differentiated state of taste receptor cells

Gao, Y.; Dutta Banik, D.; Roberts, S.; Medler, K.

10.1101/460816 — cell biology — Posted on 2018-11-04

2449 ENvironmental Dynamics Underlying Responsive Extreme Survivors (ENDURES) of Glioblastoma: a Multi-disciplinary Team-based, Multifactorial Analytical Approach

Johnston, S. K.; Whitmire, P.; Massey, S. C.; Kumthekar, P.; Porter, A. B.; Raghunand, N.; Gonzalez-Cuyar, L. F.; Mrugala, M. M.; Hawkins-Daarud, A.; Jackson, P. R.; Hu, L. S.; Sarkaria, J. N.; Wang, L.; Gatenby, R. A.; Egan, K. M.; Canoll, P.; Swanson, K. R.

10.1101/461236 — cancer biology — Posted on 2018-11-04

2450 Inhibition of tetrameric Patched1 by Sonic Hedgehog through an asymmetric paradigm

Qian, H.; Cao, P.; Hu, M.; Gao, S.; Yan, N.; Gong, X.

10.1101/461491 — biophysics — Posted on 2018-11-04

2451 Graphlet Laplacians: graphlet-based neighbourhoods highlight topology-function and topology-disease relationships

Windels, S. F. L.; Malod-Dognin, N.; Przulj, N.

10.1101/460964 — bioinformatics — Posted on 2018-11-04

2452 pyMeSHSim: an integrative python package to realize biomedical named entity recognition, normalization and comparison

Luo, Z.-H.; Shi, M.-W.; Yang, Z.; Zhang, H.-Y.; Chen, Z.-X.

10.1101/459172 — bioinformatics — Posted on 2018-11-04

2453 High-throughput data-driven analysis of myofiber composition reveals muscle-specific disease and age-associated patterns

Raz, V.; Raz, Y.; van de Vijver, D.; Bindellini, D.; van Putten, M.; van den Akker, E.

10.1101/461608 — bioinformatics — Posted on 2018-11-04

2454 Non-invasive ultrasound quantification of Scar Tissue Volume predicts functional changes during tendon healing

Ackerman, J.; Studentsova, V.; Loiselle, A.

10.1101/460790 — bioengineering — Posted on 2018-11-04

2455 Timing Polymerase Pausing with TV-PRO-seq

Zhang, J.; Cavallaro, M.; Hebenstreit, D.

10.1101/461442 — systems biology — Posted on 2018-11-04

2456 Delays, behaviour and transmission: modelling the impact of effective private provider engagement on tuberculosis control in urban India

Arinaminpathy, N.; Deo, S.; Singh, S.; Khaparde, S.; Rao, R.; Vadera, B.; Kulshrestha, N.; Gupta, D.; Rade, K.; Nair, S. A.; Dewan, P.

10.1101/461426 — systems biology — Posted on 2018-11-04

2457 First Osteosarcoma Reported from a New World Elapid Snake and Review of Reptilian Bony Tumors

Hall, A. S.; Jacob, J. L.; Smith, E. N.

10.1101/461202 — pathology — Posted on 2018-11-04

2458 Neural Sampling Strategies for Visual Stimulus Reconstruction from Two-photon Imaging of Mouse Primary Visual Cortex

Garasto, S.; Nicola, W.; Bharath, A. A.; Schultz, S. R.

10.1101/460659 — neuroscience — Posted on 2018-11-04

2459 Ventral hippocampal projections to the medial prefrontal cortex regulate social memory

Phillips, M. L.; Robinson, H. A.; Pozzo-Miller, L.

10.1101/461533 — neuroscience — Posted on 2018-11-04

2460 Oligodendrocyte Precursor Cells Are Co-Opted by the Immune System to Cross-Present Antigen and Mediate Cytotoxicity

Kirby, L.; Jin, J.; Gonzalez-Cardona, J.; Smith, M.; Martin, K.; Wang, J.; Strasburger, H.; Herbst, L.; Alexis, M.; Karnell, J.; Davidson, T.; Dutta, R.; Goverman, J.; Bergles, D. E.; Calabresi, P. A.

10.1101/461434 — neuroscience — Posted on 2018-11-04

2461 On-site integrated production of cellulases and β-glucosidases by Trichoderma reesei Rut C30 using steam pretreated sugarcane bagasse

Fernandes de Souza, M.; Pinto da Silva Bon, E.; Sant'Ana da Silva, A.

10.1101/461012 — microbiology — Posted on 2018-11-04

2462 Homologous recombination shapes the genetic diversity and drives the evolution of African swine fever viruses

Zhu, Z.; Cai, Z.; Lu, C.; Zhang, Z.; Fan, Y.; Zhang, G.; Jiang, T.; Tan, Y.; Xiao, C.; Peng, Y.

10.1101/460832 — microbiology — Posted on 2018-11-04

2463 A requirement for neutrophil glycosaminoglycans in the navigation of chemokine gradients is revealed by the streptococcal protease SpyCEP

Goldblatt, J.; Lawrenson, R. A.; Muir, L.; Dattani, S.; Tsuchiya, T.; Kanegasaki, S.; Sriskandan, S.; Pease, J. E.

10.1101/461418 — immunology — Posted on 2018-11-04

2464 Multiscale causal network models of Alzheimer’s disease identify VGF as a key regulator of disease

Beckmann, N. D.; Lin, W.-J.; Wang, M.; Cohain, A. T.; Wang, P.; Ma, W.; Wang, Y.-C.; Jiang, C.; Audrain, M.; Comella, P.; Hariharan, S. P.; Belbin, G. M.; Levey, A. I.; Seyfried, N. T.; Dammer, E. B.; Duong, D.; Lah, J. J.; Haure-Mirande, J.-V.; Shackleton, B.; Charney, A. W.; Kenny, E.; Zhu, J.; Haroutunian, V.; Katsel, P.; Gandy, S.; Tu, Z.; Ehrlich, M.; Zhang, B.; Salton, S. R.; Schadt, E. E.

10.1101/458430 — genomics — Posted on 2018-11-04

2465 De novo transcriptome assembly of the Italian white truffle (Tuber magnatum Pico)

Vita, F.; Alpi, A.; Bertolini, E.

10.1101/461483 — genomics — Posted on 2018-11-04

2466 Basal stem cell fate specification is mediated by SMAD signaling in the developing human lung

Miller, A. J.; Yu, Q.; Czerwinski, M.; Tsai, Y.-H.; Conway, R. F.; Wu, A.; Holloway, E. M.; Walker, T.; Glass, I. A.; Treutlein, B.; Camp, J. G.; Spence, J. R.

10.1101/461103 — developmental biology — Posted on 2018-11-04

2467 Pluripotent Stem Cell-derived Cerebral Organoids Reveal Human Oligodendrogenesis with Dorsal and Ventral Origins

Kim, H.; Xu, R.; Ragunathan, P.; Dunaevsky, A.; Liu, Y.; Dreyfus, C.; Jiang, P.

10.1101/460907 — developmental biology — Posted on 2018-11-04

2468 scRMD: Imputation for single cell RNA-seq data via robust matrix decomposition

Chen, C.; Wu, C.; Wu, L.; Wang, Y.; Deng, M.; Xi, R.

10.1101/459404 — bioinformatics — Posted on 2018-11-04

2469 Accumulation of prelamin A drives inflammation in the heart with implications for treatment of inherited and acquired cardiomyopathies

10.1101/457044 — pathology — Posted on 2018-11-04

2470 Image processing and analysis methods for the Adolescent Brain Cognitive Development Study

Hagler, D. J.; Hatton, S. N.; Makowski, C.; Cornejo, M. D.; Fair, D. A.; Dick, A. S.; Sutherland, M. T.; Casey, B. J.; Barch, D. M.; Harms, M. P.; Watts, R.; Bjork, J. M.; Garavan, H. P.; Hilmer, L.; Pung, C. J.; Sicat, C. S.; Kuperman, J.; Bartsch, H.; Xue, F.; Heitzeg, M. M.; Laird, A. R.; Trinh, T. T.; Gonzalez, R.; Tapert, S. F.; Riedel, M. C.; Squeglia, L. M.; Hyde, L. W.; Rosenberg, M. D.; Earl, E. A.; Howlett, K. D.; Baker, F. C.; Soules, M.; Diaz, J.; Ruiz de Leon, O.; Thompson, W. K.; Neale, M. C.; Herting, M.; Sowell, E. R.; Alvarez, R. P.; Hawes, S. W.; Sanchez, M.; Bodurka, J.; Bre

10.1101/457739 — neuroscience — Posted on 2018-11-04

2471 Metabolite composition of sinking particles reflects a changing microbial community and differential metabolite degradation

Johnson, W. M.; Longnecker, K.; Kido Soule, M. C.; Arnold, W. A.; Bhatia, M. P.; Hallam, S. J.; Van Mooy, B. A. S.; Kujawinski, E. B.

10.1101/459461 — microbiology — Posted on 2018-11-04

2472 Genome-wide association study of piscine myocarditis virus (PMCV) robustness in Atlantic salmon (Salmo salar)

Hillestad, B.; Moghadam, H. K.

10.1101/458901 — genomics — Posted on 2018-11-04

2473 Partitioned coalescence support reveals biases in species-tree methods and detects gene trees that determine phylogenomic conflicts

Gatesy, J.; Sloan, D.; Warren, J. M.; Baker, R. H.; Simmons, M. P.; Springer, M. S.

10.1101/461699 — evolutionary biology — Posted on 2018-11-04

2474 The transcriptome-wide landscape and modalities of EJC binding in adult Drosophila

Obrdlik, A.; Lin, G.; Haberman, N.; Ule, J.; Ephrussi, A.

10.1101/459354 — biochemistry — Posted on 2018-11-04

2475 Coccinellid host morphology dictates morphological diversity of the parasitoid wasp Dinocampus coccinellae

Vansant, H.; Vasquez, Y.; Obrycki, J.; Sethuraman, A.

10.1101/460998 — evolutionary biology — Posted on 2018-11-04

2476 Feedback-generated muscle activity reveals age-dependentdecline of motor learning

Iturralde, P. A.; Torres-Oviedo, G.

10.1101/372359 — neuroscience — Posted on 2018-11-03

2477 Hydraulic traits are more diverse in flowers than in leaves

Roddy, A.; Jiang, G.-F.; Cao, K.; Simonin, K.; Brodersen, C.

10.1101/461244 — evolutionary biology — Posted on 2018-11-03

2478 Convergent evolution in Arabidopsis halleri and Arabidopsis arenosa on calamine metalliferous soils

Preite, V.; Sailer, C.; Syllwasschy, L.; Bray, S.; Kraemer, U.; Yant, L.

10.1101/459362 — evolutionary biology — Posted on 2018-11-03

2479 A new species in the Anopheles gambiae complex reveals new evolutionary relationships between vector and non-vector species

Barron, M. G.; Paupy, C.; Rahola, N.; Akone-Ella, O.; Ngangue, M. F.; Wilson-Bahun, T. A.; Pombi, M.; Kengne, P.; Costantini, C.; Simard, F.; Gonzalez, J.; Ayala, D.

10.1101/460667 — evolutionary biology — Posted on 2018-11-03

2480 Distinguishing multiple-merger from Kingman coalescence using two-site frequency spectra

Rice, D. P.; Novembre, J.; Desai, M. M.

10.1101/461517 — evolutionary biology — Posted on 2018-11-03

2481 Loss of cytoplasmic incompatibility and minimal fecundity effects explain relatively low Wolbachia frequencies in Drosophila mauritiana

Meany, M. K.; Conner, W. R.; Richter, S. V.; Bailey, J. A.; Turelli, M.; Cooper, B. S.

10.1101/461574 — evolutionary biology — Posted on 2018-11-03

2482 The evolution of egg trading in simultaneous hermaphrodites

Pena, J.; Nöldeke, G.; Puebla, O.

10.1101/460386 — evolutionary biology — Posted on 2018-11-03

2483 Killer meiotic drive and dynamic evolution of the wtf gene family

Eickbush, M. T.; Young, J. M.; Zanders, S. E.

10.1101/461004 — evolutionary biology — Posted on 2018-11-03

2484 The LIM-Only Protein FHL2 is Involved in Autophagy to Regulate the Development of Skeletal Muscle

Liu, Z.; Han, S.; Wang, Y.; He, H.; Shen, X.; Chen, Y.; Cui, C.; Zhang, Y.; Ye, L.; Li, D.; Zhao, X.; Du, H.; Jiang, X.; Yu, C.; Li, Q.; Zhu, Q.; Yang, C.; Yin, H.

10.1101/459800 — molecular biology — Posted on 2018-11-03

2485 Fast, multicolor 3-D imaging of brain organoids with a new single-objective two-photon virtual light-sheet microscope

Rakotoson, I.; Delhomme, B.; Djian, P.; Deeg, A.; Brunstein, M.; Seebacher, C.; Uhl, R.; Ricard, C.; Oheim, M.

10.1101/461335 — biophysics — Posted on 2018-11-03

2486 Analysis of Polygenic Score Usage and Performance in Diverse Human Populations

Duncan, L.; Shen, H.; Gelaye, B.; Ressler, K.; Feldman, M.; Peterson, R.; Domingue, B.

10.1101/398396 — genetics — Posted on 2018-11-03

2487 Conformational dynamics of active site loops 5, 6 and 7 of enzyme Triosephosphate Isomerase: A molecular dynamics study

Dantu, S. C.; Groenhof, G.

10.1101/459198 — biophysics — Posted on 2018-11-03

2488 Transmission of motor signals from the basal ganglia to the thalamus: effect of correlations, sensory responses, and excitation

Mohagheghi Nejad, M.; Rotter, S.; Schmidt, R.

10.1101/386920 — neuroscience — Posted on 2018-11-03

2489 Stem cell differentiation trajectories in Hydra resolved at single-cell resolution

Siebert, S.; Farrell, J. A.; Cazet, J. F.; Abeykoon, Y.; Primack, A. S.; Schnitzler, C. E.; Juliano, C. E.

10.1101/460154 — developmental biology — Posted on 2018-11-03

2490 Fibroblasts and Alectinib switch the evolutionary games played by non-small cell lung cancer

Kaznatcheev, A.; Peacock, J.; Basanta, D.; Marusyk, A.; Scott, J. G.

10.1101/179259 — cancer biology — Posted on 2018-11-03

2491 Dense connectomic reconstruction in layer 4 of the somatosensory cortex

Motta, A.; Berning, M.; Boergens, K. M.; Staffler, B.; Beining, M.; Loomba, S.; Schramm, C.; Hennig, P.; Wissler, H.; Helmstaedter, M.

10.1101/460618 — neuroscience — Posted on 2018-11-03

2492 NetPyNE: a tool for data-driven multiscale modeling of brain circuits

Dura-Bernal, S.; Suter, B.; Gleeson, P.; Cantarelli, M.; Quintana, A.; Rodriguez, F.; Kedziora, D. J.; Chadderdon, G. L.; Kerr, C. C.; Neymotin, S. A.; McDougal, R.; Hines, M.; Shepherd, G. M.; Lytton, W. W.

10.1101/461137 — neuroscience — Posted on 2018-11-03

2493 Rapid Geometric Feature Signaling In The Spiking Activity Of A Complete Population Of Tactile Nerve Fibers

Delhaye, B. P.; Xia, X.; Bensmaia, S. J.

10.1101/461095 — neuroscience — Posted on 2018-11-03

2494 Conformational dynamics of active site loops 5, 6 and 7 of enzyme Triosephosphate Isomerase: A molecular dynamics study

Dantu, S. C.; Groenhof, G.

10.1101/459198 — biophysics — Posted on 2018-11-03

2495 Flexible allocation of attention in time or space across the life span: Theta and alpha oscillatory signatures of age-related decline and compensation as revealed by MEG

Callaghan, E.; Holland, C. A.; Kessler, K.

10.1101/461020 — neuroscience — Posted on 2018-11-03

2496 A framework for evaluating correspondence between brain images using anatomical fiducials

Lau, J. C.; Parrent, A. G.; Demarco, J.; Gupta, G.; Park, P. J.; Ferko, K.; Khan, A. R.; Peters, T. M.

10.1101/460675 — neuroscience — Posted on 2018-11-03

2497 Does batrachotoxin autoresistance co-evolve with toxicity in Phyllobates poison-dart frogs?

Marquez, R.; Ramirez-Castaneda, V.; Amezquita, A.

10.1101/460865 — evolutionary biology — Posted on 2018-11-03

2498 Feedback-generated muscle activity reveals age-dependentdecline of motor learning

Iturralde, P. A.; Torres-Oviedo, G.

10.1101/372359 — neuroscience — Posted on 2018-11-03

2499 The human claustrum is functionally connected to cognitive networks and involved in cognitive control

Krimmel, S. R.; White, M. G.; Panicker, M. H.; Barrett, F. S.; Mathur, B. N.; Seminowicz, D. A.

10.1101/461319 — neuroscience — Posted on 2018-11-03

2500 A brain network basis of Fragile X syndrome behavioral penetrance determined by X chromosome inactivation in female mice

Szelenyi, E.; Fisenne, D.; Knox, J. E.; Harris, J. A.; Gornet, J. A.; Palaniswamy, R.; Kim, Y.; Venkataraju, K. U.; Osten, P.

10.1101/458992 — neuroscience — Posted on 2018-11-02

2501 From predictive models to cognitive models: An analysis of rat behavior in the two-armed bandit task

Miller, K. J.; Botvinick, M. M.; Brody, C. D.

10.1101/461129 — animal behavior and cognition — Posted on 2018-11-02

2502 In vivo selection for corrected β-globin alleles after CRISPR/Cas9 editing in human sickle hematopoietic stem cells enhances therapeutic potential

Magis, W.; DeWitt, M. A.; Wyman, S. K.; Vu, J. T.; Heo, S.-J.; Shao, S. J.; Hennig, F.; Romero, Z. G.; Campo-Fernandez, B.; McNeill, M.; Rettig, G. R.; Sun, Y.; Lau, P. J.; Wang, Y.; Behlke, M. A.; Kohn, D. B.; Boffelli, D.; Walters, M. C.; Corn, J. E.; Martin, D. I. K.

10.1101/432716 — genetics — Posted on 2018-11-02

2503 Dynamic network partnerships and social contagion drive cooperation

Dakin, R.; Ryder, T. B.

10.1101/430843 — animal behavior and cognition — Posted on 2018-11-02

2504 Multi-omics profiling establishes the polypharmacology of FDA Approved CDK4/6 inhibitors and its impact on drug response

Hafner, M.; Mills, C. E.; Subramanian, K.; Chen, C.; Chung, M.; Boswell, S. A.; Everley, R. A.; Walmsley, C. S.; Juric, D.; Sorger, P.

10.1101/211680 — cancer biology — Posted on 2018-11-02

2505 A glimpse at deep brain stimulation mechanisms using subthalamic nucleus optogenetic manipulations

Tiran-Cappello, A.; Pelloux, Y.; Brocard, C.; Degoulet, M.; Baunez, C.

10.1101/450767 — neuroscience — Posted on 2018-11-02

2506 Candidate Phyla Radiation Roizmanbacteria from hot springs have novel, unexpectedly abundant, and potentially alternatively functioning CRISPR-Cas systems

Chen, L.-X.; Al-Shayeb, B.; Meheust, R.; Li, W.-J.; Doudna, J. A.; Banfield, J. F.

10.1101/448639 — microbiology — Posted on 2018-11-02

2507 Dynamism and context dependency in the diversification of the megadiverse plant genus Solanum L. (Solanaceae).

Echeverria-Londono, S.; Särkinen, T.; Fenton, I. S.; Knapp, S.; Purvis, A.

10.1101/348961 — evolutionary biology — Posted on 2018-11-02

2508 Wiring together large single-cell RNA-seq sample collections

Barkas, N.; Petukhov, V.; Nikolaeva, D.; Lozinsky, Y.; Demharter, S.; Khodosevich, K.; Kharchenko, P. V.

10.1101/460246 — bioinformatics — Posted on 2018-11-02

2509 Followers of honey bee waggle dancers change their behavior when dancers are sleep-restricted or perform imprecise dances

Klein, B. A.; Vogt, M.; Unrein, K.; Reineke, D. M.

10.1101/457598 — animal behavior and cognition — Posted on 2018-11-02

2510 Peer presence and familiarity as key factors to reduce cocaine intake: evidence from translational research

Giorla, E.; Nordmann, S.; Pelloux, Y.; Roux, P.; Rosellini, S.; Davranche, K.; Montanari, C.; Giorgi, L.; Vilotitch, A.; Huguet, P.; Carrieri, P.; Baunez, C.

10.1101/286518 — neuroscience — Posted on 2018-11-02

2511 The Prevalence and Impact of Model Violations in Phylogenetics

Naser-Khdour, S.; Minh, B. Q.; Zhang, W.; Stone, E.; Lanfear, R.

10.1101/460121 — molecular biology — Posted on 2018-11-02

2512 Universal nature of collapsibility in the context of protein folding and evolution

Thirumalai, D.; Samanta, H.; Maity, H.; Reddy, G.

10.1101/461046 — biophysics — Posted on 2018-11-02

2513 Multifaceted influence of pre-mitotic cytotoxicity of primed CD8 T cells on immunity and infection

Dandamudi, D. B.; Blair, D. A.; Arifa, R.; Lafaille, J. J.; Dustin, M. L.; Mayya, V.

10.1101/456392 — immunology — Posted on 2018-11-02

2514 Increased Blood Flow and Oxidative Metabolism in the Human Brain by Transcranial Laser Stimulation

Dmochowski, G. M.; Dmochowski, J.

10.1101/459883 — neuroscience — Posted on 2018-11-02

2515 ApoE2, ApoE3 and ApoE4 Differentially Impact Multiple Signaling Pathways Regulating Synaptogenesis

Huang, Y.-W. A.; Zhou, B.; Nabet, A. M.; Wernig, M.; Südhof, T.

10.1101/460899 — molecular biology — Posted on 2018-11-02

2516 Show the model - A Harrell plot combines a forest plot of effects and uncertainty with a dot plot of the data

Walker, J. A.

10.1101/458182 — scientific communication and education — Posted on 2018-11-02

2517 Resilience to oxidative and nitrosative stress is mediated by the stressosome, RsbP and SigB in Bacillus subtilis.

Tran, V.; Geraci, K.; Midili, G.; Satterwhite, W.; Wright, R.; Bonilla, C. Y.

10.1101/460303 — microbiology — Posted on 2018-11-02

2518 The Coordination and Jumps along C4 Photosynthesis Evolution in the Genus Flaveria

Lyu, M.-J. A.; Gowik, U.; Westhoff, P.; Tao, Y.; Kelly, S.; Covshoff, S.; Clayton, H.; Hibberd, J. M.; Sage, R. F.; Ludwig, M.; Wong, G. K.-S. W.; Zhu, X.-G.

10.1101/460287 — evolutionary biology — Posted on 2018-11-02

2519 Cantharidin alters GPI-anchored protein sorting by targeting Cdc1 mediated remodeling in Endoplasmic Reticulum

Tomar, R. S.; Sahu, P. K.

10.1101/460253 — cell biology — Posted on 2018-11-02

2520 Simulation and reconstruction of metabolite-metabolite association networks using a metabolic dynamic model and correlation based-algorithms

Jahagirdar, S.; Suarez-Diez, M.; Saccenti, E.

10.1101/460519 — systems biology — Posted on 2018-11-02

2521 Modeling neural tuning in human ventral temporal cortex predicts the perception of visual ambiguity

Rosenke, M.; Davidenko, N.; Grill-Spector, K.; Weiner, K. S.

10.1101/460337 — neuroscience — Posted on 2018-11-02

2522 The complete plastid genomes of two Fabaceae orphan crops from Africa

Liao, X.; Liu, Y.; Liu, H.

10.1101/459248 — genomics — Posted on 2018-11-02

2523 A machine-learning approach for accurate detection of copy-number variants from exome sequencing

Kumar, V.; Jensen, M.; Jayakar, G.; Kelkar, N.; Girirajan, S.

10.1101/460931 — genomics — Posted on 2018-11-02

2524 An interaction-based model for neuropsychiatric features of copy-number variants

Jensen, M.; Girirajan, S.

10.1101/459958 — genomics — Posted on 2018-11-02

2525 Mental simulation of facial expressions: Mu suppression to the viewing of dynamic neutral face videos

Karakale, O.; Moore, M. R.; Kirk, I. J.

10.1101/457846 — neuroscience — Posted on 2018-11-02

2526 EEG functional connectivity metrics wPLI and wSMI account for distinct types of brain functional interactions

Imperatori, L. S.; Betta, M.; Cecchetti, L.; Canales-Johnson, A.; Ricciardi, E.; Pietrini, P.; Siclari, F.; Chennu, S.; Bernardi, G.

10.1101/450270 — neuroscience — Posted on 2018-11-02

2527 Integrative inference of brain cell similarities and differences from single-cell genomics

Welch, J.; Kozareva, V.; Ferreira, A.; Vanderburg, C.; Martin, C.; Macosko, E.

10.1101/459891 — neuroscience — Posted on 2018-11-02

2528 Respiratory heterogeneity shapes biofilm formation and host colonization in uropathogenic Escherichia coli

Beebout, C. J.; Eberly, A. R.; werby, S. H.; Reasoner, S.; Brannon, J. R.; De, S.; Fitzgerald, M. J.; Huggins, M. M.; Clayton, D. B.; Cegelski, L.; Hadjifrangiskou, M.

10.1101/460311 — microbiology — Posted on 2018-11-02

2529 Differences in effective ploidy as drivers of genome-wide endosperm expression asymmetries and seed failure in wild tomato hybrids

Roth, M.; Florez-Rueda, A. M.; Staedler, T.

10.1101/459925 — genetics — Posted on 2018-11-02

2530 Characterization of Pacific oyster (Crassostrea gigas) proteomic response to natural environmental differences

Venkataraman, Y. R.; Timmins-Schiffman, E.; Horwith, M. J.; Lowe, A. T.; Nunn, B.; Vadopalas, B.; Spencer, L. H.; Roberts, S. B.

10.1101/460204 — ecology — Posted on 2018-11-02

2531 Tfap2a is a novel gatekeeper of differentiation in renal progenitors during kidney development

Chambers, B. E.; Gerlach, G. F.; Chen, K. H.; Clark, E. G.; Leshchiner, I.; Goessling, W.; Wingert, R. A.

10.1101/460105 — developmental biology — Posted on 2018-11-02

2532 Real-Time Selective Sequencing with RUBRIC: Read Until with Basecall and Reference-Informed Criteria

Edwards, H. S.; Krishnakumar, R.; Sinha, A.; Bird, S. W.; Patel, K. D.; Bartsch, M. S.

10.1101/460014 — bioinformatics — Posted on 2018-11-02

2533 GANai: Standardizing CT Images using Generative Adversarial Network with Alternative Improvement

Liang, G.; Fouladvand, S.; Zhang, J.; Brooks, M. A.; Jacobs, N.; Chen, J.

10.1101/460188 — bioinformatics — Posted on 2018-11-02

2534 Crystal structure of human endothelin ETB receptor in complex with peptide inverse agonist IRL2500

Nagiri, C.; Shihoya, W.; Inoue, A.; Ngako Kadji, F. M.; Aoki, J.; Nureki, O.

10.1101/460410 — biochemistry — Posted on 2018-11-02

2535 Biomarker-based patient selection improves stroke rehabilitation trial efficiency

Stinear, C. M.; Byblow, W. D.; Barber, P. A.; Ackerley, S.; Smith, M.-C.; Cramer, S.

10.1101/459776 — neuroscience — Posted on 2018-11-02

2536 Comparison of Approaches to the identification of Symptom Burden in Hemodialysis Patients Utilizing Electronic Health Records

Chan, L.; Beers, K.; Chauhan, K.; Debnath, N.; Saha, A.; Pattharanitima, P.; Cho, J.; Kotanko, P.; Federman, A.; Coca, S.; Van Vleck, T.; Nadkarni, G.

10.1101/458976 — epidemiology — Posted on 2018-11-02

2537 Calcium imaging in freely-moving mice during electrical stimulation of deep brain structures

Trevathan, J. K.; Asp, A. J.; Nicolai, E. N.; Trevathan, J. M.; Kremer, N. A.; Kozai, T. D. Y.; Cheng, D.; Schachter, M. J.; Nassi, J. J.; Otte, S. L.; Parker, J. G.; Lujan, L.; Ludwig, K. A.

10.1101/460220 — bioengineering — Posted on 2018-11-02

2538 Predicting time to dementia using a quantitative template of disease progression

Bilgel, M.; Jedynak, B. M.

10.1101/458273 — neuroscience — Posted on 2018-11-02

2539 To CRUNCH or not to CRUNCH: Task Difficulty Affects Functional Brain Reorganisation during Visuospatial Working Memory Performance in Premanifest Huntington’s Disease

Soloveva, M. V.; Jamadar, S. D.; Velakoulis, D.; Poudel, G.; Georgiou-Karistianis, N.

10.1101/459180 — neuroscience — Posted on 2018-11-02

2540 Optoacoustic brains stimulation at submillimeter spatial precision

Jiang, Y.; Lee, H. J.; Lan, L.; Tseng, H.-a.; Yang, C.; Man, H.-Y.; Han, X.; Cheng, J.-X.

10.1101/459933 — neuroscience — Posted on 2018-11-02

2541 Intracellular calcium stores mediate a synapse-specific form of metaplasticity at hippocampal dendritic spines

Mahajan, G.; Nadkarni, S.

10.1101/460568 — neuroscience — Posted on 2018-11-02

2542 Intermittent abstinence potentiates oxycodone self-administration under extended access conditions and alters brain reward sensitivity

Nguyen, J.; Grant, Y.; Taffe, M.

10.1101/460048 — neuroscience — Posted on 2018-11-02

2543 Genome-wide association study of peripheral blood DNA methylation and conventional mammographic density measures

Li, S.; Dugue, P.-A.; Baglietto, L.; Severi, G.; Wong, E. M.; Nguyen, T. L.; Stone, J. R.; English, D.; Southey, M. S.; Giles, G. G.; Hopper, J. L.; Milne, R. L.

10.1101/458299 — epidemiology — Posted on 2018-11-02

2544 Impact of nutrient cycling on food web stability

Quevreux, P.; Barot, S.; Thebault, E.

10.1101/276592 — ecology — Posted on 2018-11-02

2545 Building a National HIV Cohort from Routine Laboratory Data: Probabilistic Record-Linkage with Graphs

Bor, J.; MacLeod, W.; Oleinik, K.; Potter, J.; Brennan, A.; Candy, S.; Maskew, M.; Fox, M. P.; Sanne, I.; Stevens, W. S.; Carmona, S.

10.1101/450304 — epidemiology — Posted on 2018-11-02

2546 Targeting and Vaccine Durability Are Key for Population-level Impact and Cost-Effectiveness of a Pox-Protein HIV Vaccine Regimen in South Africa

Selinger, C.; Bershteyn, A.; Dimitrov, D. T.; Adamson, B. J.; Revill, P.; Hallett, T. B.; Phillips, A.; Bekker, L.-G.; Rees, H.; Gray, G.

10.1101/459909 — epidemiology — Posted on 2018-11-02

2547 Detection of enterovirus protein and RNA in multiple tissues from nPOD organ donors with type 1 diabetes

Oikarinen, M.; Laiho, J. E.; Oikarinen, S.; Richardson, S. J.; Kusmartseva, I.; Campbell-Thompson, M.; Morgan, N. M.; Pugliese, A.; Tauriainen, S.; Toniolo, A.; Hyoty, H.

10.1101/459347 — epidemiology — Posted on 2018-11-02

2548 Characterization of intact proviruses in blood and lymph node from HIV-infected individuals undergoing analytical treatment interruption

Vibholm, L. K.; Cetrulo Lorenzi, J. C.; Pai, J.; Cohen, Y. Z.; Oliveira, T. Y.; Barton, J. P.; Noceda, M. G.; Lu, C.-L.; Ablanedo-Terrazas, Y.; Del Rio Estrada, P. M.; Reyes-Teran, G.; Tolstrup, M.; Denton, P. W.; Damsgaard, T.; Sogaard, O. S.; Nussenzweig, M. C.

10.1101/456020 — clinical trials — Posted on 2018-11-02

2549 Meropenem vs standard of care for treatment of neonatal late onset sepsis (NeoMero1): a randomised controlled trial

Lutsar, I.; Chazallon, C.; Trafojer, U.; Meiffredy de Cabre, V.; Auriti, C.; Bertaina, C.; Calo Carducci, F. I.; Canpolat, F. E.; Esposito, S.; Fournier, I.; Hallik, M.; Heath, P. T.; Ilmoja, M.-L.; Iosifidis, E.; Kuznetsova, J.; Meyer, L.; Metsvaht, T.; Mitsiakos, G.; Pana, Z. D.; Mosca, F.; Pugni, L.; Aboulker, J.-P.; Roilides, E.; Rossi, P.; Sarafidis, K.; Sanchez, L.; Sharland, M.; Usonis, V.; Warris, A.; Giaquinto, C.

10.1101/456871 — clinical trials — Posted on 2018-11-02

2550 STRUCTURE-ACTIVITY STUDIES ON ANALOGUES OF 4-METHYLGUAIACOL, A CATTLE ANAL ODOUR CONSTITUENT REPELLENT TO THE BROWN EAR TICK (Rhipicephalus appendiculatus)

Kariuki, M.; HASSANALI, A.; Ng'ang,a, M. M.

10.1101/460725 — epidemiology — Posted on 2018-11-02

2551 Distinct vascular genomic response of proton and gamma radiation.

Ricciotti, E.; Sarantopoulou, D.; Grant, G. R.; Sanzari, J. K.; Krigsfeld, G. S.; Kiliti, A. J.; Kennedy, A. R.; Grosser, T.

10.1101/460766 — systems biology — Posted on 2018-11-02

2552 Different features of cholera in malnourished and non-malnourised children: analysis of 10-year surveillance data from a large diarrheal disease hospital in urban Bangladesh

Nuzhat, S.; Hossain, M. I.; Shaly, N. J.; Islam, R.; Khan, S. H.; Bardhan, P. K.; khan, A. I.; Faruque, A. S. G.; Chisti, M. J.; Ahmed, T.

10.1101/460782 — microbiology — Posted on 2018-11-02

2553 Using a continuum model to decipher the mechanics of embryonic tissue spreading from time-lapse image sequences: An approximate Bayesian computation approach

Stepien, T.; Lynch, H. E.; Yancey, S. X.; Dempsey, L.; Davidson, L. A.

10.1101/460774 — biophysics — Posted on 2018-11-02

2554 Grouping effects in numerosity perception under prolonged viewing conditions

Poom, L.; Lindskog, M.; Winman, A.; van den Berg, R.

10.1101/460741 — animal behavior and cognition — Posted on 2018-11-02

2555 Applying non-parametric testing to discrete transfer entropy

Olin-Ammentorp, W.; Cady, N.

10.1101/460733 — neuroscience — Posted on 2018-11-02

2556 Risky behaviors and Parkinson’s disease: A Mendelian randomization study in up to 1 million study participants

Grover, S.; Del Greco M, F.; Kasten, M.; Klein, C.; Lill, C. M.; Koenig, I. R.

10.1101/446807 — genetics — Posted on 2018-11-02

2557 Palliative care for people living with HIV/AIDS: Factors influencing healthcare workers knowledge, attitude and practice in public health facilities, Abuja, Nigeria

Ajisegiri, W. S.; Abubakar, A. A.; Gobir, A. A.; Balogun, M. S.; Sabitu, K.

10.1101/460709 — epidemiology — Posted on 2018-11-02

2558 Imaging of sub-cellular fluctuations provides a rapid way to observe bacterial viability and response to antibiotics

Bermingham, C. R.; Murillo, I.; Payot, A. D. J.; Balram, K. C.; Kloucek, M. B.; Hanna, S.; Redmond, N. M.; Baxter, H.; Oulton, R.; Avison, M. B.; Antognozzi, M.

10.1101/460139 — physiology — Posted on 2018-11-02

2559 Laboratory contamination over time during low-biomass sample analysis

Weyrich, L.; Farrer, A. G.; Eisenhofer, R.; Arriola, L. A.; Young, J.; Selway, C. A.; Handsley-Davis, M.; Adler, C.; Breen, J.; Cooper, A.

10.1101/460212 — microbiology — Posted on 2018-11-02

2560 A synthetic system that senses Candida albicans and inhibits virulence factors

Tscherner, M.; Giessen, T. W.; Markey, L.; Kumamoto, C. A.; Silver, P. A.

10.1101/342287 — synthetic biology — Posted on 2018-11-02

2561 Evolution of salivary glue genes in Drosophila species

Da Lage, J.-L.; Thomas, G. W. C.; Bonneau, M.; Courtier-Orgogozo, V.

10.1101/359190 — evolutionary biology — Posted on 2018-11-02

2562 Low-cost, sub-micron resolution, wide-field computational microscopy using opensource hardware

Aidukas, T.; Eckert, R.; Harvey, A. R.; Waller, L.; Konda, P. C.

10.1101/460055 — pathology — Posted on 2018-11-02

2563 Rearranged zebrafish genomic DNA induces zebrafish mutant after microinjection into fertilized egg and preliminary study of the mechanism

Cao, Z.; Xu, P.; Bing, X.; Ding, W.; Qiang, J.

10.1101/460238 — genetics — Posted on 2018-11-02

2564 An efficient timer and sizer of protein motions reveals the time scales of functional dynamics in structured biomacromolecules

Chan, J.; Lin, H.-R.; Takemura, K.; Chang, K.-C.; Chang, Y.-Y.; Joti, Y.; Kitao, A.; Yang, L.-W.

10.1101/384511 — biophysics — Posted on 2018-11-02

2565 A New Family of Similarity Measures for Scoring Confidence of Protein Interactions using Gene Ontology

Paul, M.; Anand, A.

10.1101/459107 — bioinformatics — Posted on 2018-11-02

2566 The LIM-Only Protein FHL2 is Involved in Autophagy to Regulate the Development of Skeletal Muscle

Liu, Z.; Han, S.; Wang, Y.; He, H.; Shen, X.; Chen, Y.; Cui, C.; Zhang, Y.; Ye, L.; Li, D.; Zhao, X.; Du, H.; Jiang, X.; Yu, C.; Li, Q.; Zhu, Q.; Yang, C.; Yin, H.

10.1101/459800 — molecular biology — Posted on 2018-11-02

2567 Comprehensive integration of single cell data

Stuart, T.; Butler, A.; Hoffman, P.; Hafemeister, C.; Papalexi, E.; Mauck, W. M.; Stoeckius, M.; Smibert, P.; Satija, R.

10.1101/460147 — genomics — Posted on 2018-11-02

2568 Single-Cell Modeling of CD8+ T Cell Exhaustion Predicts Response to Cancer Immunotherapy

Jin, G.; Xue, G.; Wang, R.-S.; Wu, L.-Y.; Lance, M.; Lu, Y.; Zhang, W.

10.1101/459867 — bioinformatics — Posted on 2018-11-02

2569 Transmission and persistence of crAssphage, a ubiquitous human-associated bacteriophage

Tamburini, F. B.; Sherlock, G. J.; Bhatt, A. S.

10.1101/460113 — microbiology — Posted on 2018-11-02

2570 The parasitic worm product ES-62 normalises the gut microbiota/bone marrow axis in inflammatory arthritis

Doonan, J.; Tarafdar, A.; Pineda, M. A.; Lumb, F. E.; Crowe, J.; Khan, A. M.; Hoskisson, P. A.; Harnett, M. M.; Harnett, W.

10.1101/459768 — immunology — Posted on 2018-11-02

2571 Generating a sequence map of the pig pan-genome

Tian, X.; Li, R.; Fu, W.; Li, Y.; Wang, X.; Li, M.; Du, D.; Tang, Q.; Cai, Y.; Long, Y.; Zhao, Y.; Li, M.; Jiang, Y.

10.1101/459453 — genomics — Posted on 2018-11-02

2572 A Mechanically Weak Extracellular Membrane-Adjacent Domain Induces Dimerization of Protocadherin-15

De-la-Torre, P.; Choudhary, D.; Araya-Secchi, R.; Narui, Y.; Sotomayor, M.

10.1101/460097 — biophysics — Posted on 2018-11-02

2573 Mechanical Interactions between a Cell and an Extracellular Environment Facilitate Durotactic Cell Migration

Hassan, A.-R.; Biel, T.; Kim, T.

10.1101/460170 — biophysics — Posted on 2018-11-02

2574 A comparison of bivariate frequency domain measures of electrophysiological connectivity

Pascual-Marqui, R. D.; Faber, P.; Kinoshita, T.; Kochi, K.; Milz, P.; Nishida, K.; Yoshimura, M.

10.1101/459503 — neuroscience — Posted on 2018-11-01

2575 CasLocusAnno: a web-based server for annotating Cas loci and their corresponding (sub)types

Dong, C.; Zeng, Z.; Wen, Q.-F.; Liu, S.; Du, M.-Z.; Gao, Y.-Z.; Liao, Z.; Rao, N.; Huang, J.; Guo, F.-B.

10.1101/459131 — bioinformatics — Posted on 2018-11-01

2576 Expectation-induced modulation of metastable activity underlies faster coding of sensory stimuli

Mazzucato, L.; La Camera, G.; Fontanini, A.

10.1101/199380 — neuroscience — Posted on 2018-11-01

2577 A comparison of automated lesion segmentation approaches for chronic stroke T1-weighted MRI data

Ito, K. L.; Kim, H.; Liew, S.-L.

10.1101/441451 — neuroscience — Posted on 2018-11-01

2578 OLIVER: A Tool for Visual Data Analysis on Longitudinal Plant Phenomics Data

Tessmer, O. L.; Kramer, D. M.; Chen, J.

10.1101/411595 — bioinformatics — Posted on 2018-11-01

2579 Identifying Representative Network Motifs for Inferring Higher-order Structure of Biological Networks

Wang, T.; Peng, J.; Wang, Y.; Chen, J.

10.1101/411520 — bioinformatics — Posted on 2018-11-01

2580 Transfer learning in single-cell transcriptomics improves data denoising and pattern discovery

Wang, J.; Agarwal, D.; Huang, M.; Hu, G.; Zhou, Z.; Conley, V. B.; MacMullan, H.; Zhang, N. R.

10.1101/457879 — bioinformatics — Posted on 2018-11-01

2581 The population dynamics of a bacterial pathogen after host re-infection affects the founding population size

Jiang, G.; Peyraud, R.; Remigi, P.; Guidot, A.; Berthome, R.; Ding, W.; Jousset, A.; Genin, S.; Peeters, N.

10.1101/061408 — plant biology — Posted on 2018-11-01

2582 Mouse Genome-Wide Association and Systems Genetics Identifies Lhfp as a Regulator of Bone Mass

Mesner, L. D.; Calabrese, G. M.; Al-Barghouthi, B.; Gatti, D. M.; Sundberg, J. P.; Churchill, G. A.; Godfrey, D.; Ackert-Bicknell, C.; Farber, C. R.

10.1101/454678 — genetics — Posted on 2018-11-01

2583 Parallel patterns of development between independent cases of hybrid seed inviability in Mimulus

Coughlan, J. M.; Willis, J. H.

10.1101/458752 — evolutionary biology — Posted on 2018-11-01

2584 An Accessible Continuous-Culture Turbidostat for Pooled Analysis of Complex Libraries

McGeachy, A. M.; Meacham, Z. A.; Ingolia, N.

10.1101/450536 — systems biology — Posted on 2018-11-01

2585 Multicolor fluorescent imaging by space-constrained computational hyperspectral imaging

Wang, Y.; Yang, B.; Feng, S.; Pessino, V.; Huang, B.

10.1101/458869 — bioengineering — Posted on 2018-11-01

2586 Transcriptional dynamics following freezing stress reveal selection for mechanisms of freeze tolerance at the poleward range margin in the cold water intertidal barnacle Semibalanus balanoides

Marshall, K. E.; Dowle, E. J.; Petrunina, A.; Kolbasov, G.; Chan, B. K. K.

10.1101/449330 — physiology — Posted on 2018-11-01

2587 A complete Cannabis chromosome assembly and adaptive admixture for elevated cannabidiol (CBD) content

Grassa, C. J.; Wenger, J. P.; Dabney, C.; Poplawski, S. G.; Motley, S. T.; Michael, T. P.; Schwartz, C. J.; Weiblen, G. D.

10.1101/458083 — genomics — Posted on 2018-11-01

2588 Ancient human genomes show that disease-causing mutations have increased in frequency over the past 40,000 years

Aris-Brosou, S.

10.1101/307058 — evolutionary biology — Posted on 2018-11-01

2589 fruitless functions downstream of doublesex to promote sexual dimorphism of the gonad stem cell niche

Zhou, H.; Whitworth, C.; Pozmanter, C.; Neville, M. C.; Van Doren, M.

10.1101/454546 — developmental biology — Posted on 2018-11-01

2590 Domain organization and conformational change of dynactin p150

Saito, K.; Murayama, T.; Hata, T.; Kobayashi, T.; Shibata, K.; Kazuno, S.; Fujimura, T.; Sakurai, T.; Toyoshima, Y. Y.

10.1101/459040 — biophysics — Posted on 2018-11-01

2591 An explorable public transcriptomics compendium for eukaryotic microalgae

Ashworth, J.; Ralph, P. J.

10.1101/403063 — systems biology — Posted on 2018-11-01

2592 The landscape of antigen-specific T cells in human cancers

Li, B.; Liu, L.; Zhang, J.; Chen, J.; Ye, J.; Filatenkov, A.; Shukla, S.; Qiao, J.; Zhan, X.; Wu, C.; Fu, Y.-X.

10.1101/459842 — bioinformatics — Posted on 2018-11-01

2593 Drosophila anion exchanger 2 is required for proper ovary development and oogenesis

Benitez, M.; Tatapudy, S.; Barber, D.; Nystul, T.

10.1101/459826 — developmental biology — Posted on 2018-11-01

2594 EFCAB9 is a pH-Dependent Ca2+ Sensor that Regulates CatSper Channel Activity and Sperm Motility

Hwang, J. Y.; Mannowetz, N.; Zhang, Y.; Everley, R. A.; Gygi, S.; Bewersdorf, J.; Lishko, P.; Chung, J.-J.

10.1101/459487 — cell biology — Posted on 2018-11-01

2595 Inhalation of marijuana affects Drosophila heart function

Gomez, I.; Rodriguez, M.; Santalla, M.; Kassis, G.; Colman Lerner, J. E.; Aranda, O.; Sedan, D.; Andrinolo, D.; Valverde, C. A.; Ferrero, P.

10.1101/459792 — physiology — Posted on 2018-11-01

2596 Mesothelioma Interactome with 367 Novel Protein-Protein Interactions

Karunakaran, K. B.; Yanamala, N.; Boyce, G.; Ganapathiraju, M.

10.1101/459065 — cancer biology — Posted on 2018-11-01

2597 Single-molecule imaging of DNA gyrase activity in living Escherichia coli

Stracy, M.; Wollman, A.; Kaja, E.; Gapinski, J.; Lee, J.-E.; Leek, V.; McKie, S.; Mitchenall, L.; Maxwell, A.; Sherratt, D.; Leake, M.; Zawadzki, P.

10.1101/460006 — biophysics — Posted on 2018-11-01

2598 A Pre-transplant Blood-based Lipid Signature for Prediction of Antibody-mediated Rejection in Kidney Transplant Patients

Gupta, G.; Stern, J.; Bobba, S.; Kimball, P.; Kumar, N. G.; King, A.; Kumar, D.; Levy, M.; Contaifer, D.; Wijesinghe, D. S.

10.1101/460030 — biochemistry — Posted on 2018-11-01

2599 Contractile actomyosin network on nuclear envelope remnants positions chromosomes for mitosis

Booth, A. J.; Yue, Z.; Eykelenboom, J. K.; Stiff, T.; Luxton, G. G.; Hochegger, H.; Tanaka, T. U.

10.1101/459750 — cell biology — Posted on 2018-11-01

2600 Gating modules of the AMPA receptor pore domain revealed by unnatural amino acid mutagenesis

Poulsen, M.; Poshtiban, A.; Klippenstein, V.; Ghisi, V.; Plested, A.

10.1101/449181 — neuroscience — Posted on 2018-11-01

2601 A direct selection strategy for isolating aptamers with pH-sensitive binding activity

Gordon, C. K. L.; Eisenstein, M.; Soh, H. T.

10.1101/460063 — synthetic biology — Posted on 2018-11-01

2602 Chiral twisting in cytoskeletal polymers regulates filament size and orientation

Shi, H.; Quint, D.; Gopinathan, A.; Huang, K. C.

10.1101/459974 — biophysics — Posted on 2018-11-01

2603 Population adaptation in efficient balanced networks

Gutierrez, G. J.; Deneve, S.

10.1101/211748 — neuroscience — Posted on 2018-11-01

2604 SilentMutations (SIM): a tool for analyzing long-range RNA-RNA interactions in viral genomes and structured RNAs

Desiro, D.; Hölzer, M.; Ibrahim, B.; Marz, M.

10.1101/424002 — bioinformatics — Posted on 2018-11-01

2605 In vivo characterization of candidate genes for heart rate variability identifies culprits for sinoatrial pauses and arrests

von der Heyde, B.; Emmanouilidou, A.; Klingström, T.; Mazzaferro, E.; Vicenzi, S.; Jumaa, S.; Dethlefsen, O.; Snieder, H.; de Geus, E.; Ingelsson, E.; Allalou, A.; Brooke, H. L.; den Hoed, M.

10.1101/385500 — genomics — Posted on 2018-11-01

2606 Twin Study of Early-Onset Major Depression Finds DNA Methylation Enrichment for Neurodevelopmental Genes

Roberson-Nay, R.; Wolen, A. R.; Lapato, D. M.; Lancaster, E. E.; Webb, B. T.; Verhulst, B.; Hettema, J. M.; York, T. P.

10.1101/422345 — genetics — Posted on 2018-11-01

2607 Cooperative Cobinding of Synthetic and Natural Ligands to the Nuclear Receptor PPARγ

Shang, J.; Brust, R.; Mosure, S. A.; Bass, J.; Munoz-Tello, P.; Lin, H.; Hughes, T. S.; Tang, M.; Ge, Q.; Kamekencka, T. M.; Kojetin, D. J.

10.1101/252817 — biochemistry — Posted on 2018-11-01

2608 A Reproducible Triple-Network Neurobiology of Depressive Rumination

Pisner, D.; Shumake, J.; Beevers, C.; Schnyer, D.

10.1101/365759 — neuroscience — Posted on 2018-11-01

2609 HIV-1 subtype C with PYxE insertion has enhanced binding of gag-p6 to host cell protein ALIX and increased replication fitness

van Domselaar, R.; Njenda, D. T.; Rao, R. K.; Sönnerborg, A.; Singh, K.; Neogi, U.

10.1101/459156 — microbiology — Posted on 2018-11-01

2610 A post-transcriptional program of chemoresistance by AU-rich elements/TTP in cancer quiescence

Lee, S.; Micalizzi, D.; Truesdell, S. S.; Bukhari, S. I.; Boukhali, M.; Lombardi-Story, J.; Kato, Y.; Dey-Guha, I.; Nicholson, B. T.; Choo, M.-K.; Myers, D. T.; Lee, D.; Mazzola, M. A.; Raheja, R.; Langenbucher, A.; Haradhvala, N. J.; Lawrence, M.; Gandhi, R.; Sweetser, D. A.; Sykes, D.; Haas, W.; Haber, D. A.; Maheswaran, S.; Vasudevan, S.

10.1101/418715 — cancer biology — Posted on 2018-11-01

2611 Shared behavioral mechanisms underlie C. elegans aggregation and swarming

Ding, S. S.; Schumacher, L. J.; Javer, A. E.; Endres, R. G.; Brown, A. E.

10.1101/398370 — biophysics — Posted on 2018-11-01

2612 High interictal connectivity within the resection zone is associated with favorable post-surgical outcomes in focal epilepsy patients

Shah, P.; Bernabei, J.; Kini, L.; Ashourvan, A.; Boccanfuso, J.; Archer, R.; Oechsel, K.; Lucas, T. H.; Bassett, D. S.; Davis, K.; Litt, B.

10.1101/459008 — neuroscience — Posted on 2018-11-01

2613 Loss of Rap1 supports recombination-based telomere maintenance independent of RNA-DNA hybrids in fission yeast

Hu, Y.; Bennett, H. W.; Liu, N.; Moravec, M.; Williams, J. F.; Azzalin, C. M.; King, M. C.

10.1101/458968 — genetics — Posted on 2018-11-01

2614 Human bone marrow disorders recapitulated in vitro using organ chip technology

Chou, D. B.; Frismantas, V.; Milton, Y.; David, R.; Pop-Damkov, P.; Ferguson, D.; MacDonald, A.; Vargel Bolukbasi, O.; Joyce, C. E.; Moreira Teixeira, L. S.; Rech, A.; Jiang, A.; Calamari, E.; Jalili-Firoozinezhad, S.; Ng, C. F.; Choe, Y.; Clauson, S.; Myers, K.; Hasserjian, R. P.; Novak, R.; Levy, O.; Prantil-Baun, R.; Novina, C. D.; Shimamura, A.; Ewart, L.; Ingber, D. E.

10.1101/458935 — bioengineering — Posted on 2018-11-01

2615 Multiplexed Profiling of Single-cell Extracellular Vesicles Secretion

Ji, Y.; Qi, D.; Li, L.; Su, H.; Li, X.; Luo, Y.; Sun, B.; Zhang, F.; Lin, B.; Liu, T.; Lu, Y.

10.1101/459438 — bioengineering — Posted on 2018-11-01

2616 A High-Resolution Luminescent Assay For Rapid And Continuous Monitoring Of Protein Translocation Across Biological Membranes

Pereira, G. C.; Allen, W. J.; Watkins, D. W.; Buddrus, L.; Noone, D.; Liu, X.; Richardson, A. P.; Chacinska, A.; Collinson, I.

10.1101/456921 — biochemistry — Posted on 2018-11-01

2617 The complete plastid genomes of four species from Brassicales

Mu, W.; Yang, T.; Liu, X.

10.1101/458000 — plant biology — Posted on 2018-11-01

2618 Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank

Coleman, J. R. I.; Peyrot, W. J.; Purves, K. L.; Davis, K. A. S.; Rayner, C.; Choi, S. W.; Hübel, C.; Gaspar, H. A.; Kan, C.; Van der Auwera, S.; Adams, M. J.; Lyall, D. M.; Choi, K.; Major Depressive Disorder Working Group of the Psychiatric Genomics Consortium, ; Dunn, E. C.; Vassos, E.; Danese, A.; Maughan, B.; Grabe, H. J.; Lewis, C. M.; O'Reilly, P. F.; McIntosh, A. M.; Smith, D. J.; Wray, N. R.; Hotopf, M.; Eley, T. C.; Breen, G.

10.1101/247353 — genomics — Posted on 2018-11-01

2619 Domain organization and conformational change of dynactin p150

Saito, K.; Murayama, T.; Hata, T.; Kobayashi, T.; Shibata, K.; Kazuno, S.; Fujimura, T.; Sakurai, T.; Toyoshima, Y. Y.

10.1101/459040 — biophysics — Posted on 2018-11-01

2620 A de novo peroxidase is also a promiscuous yet stereoselective carbene transferase

Stenner, R.; Steventon, J.; Seddon, A.; Anderson, J. L. R.

10.1101/328484 — synthetic biology — Posted on 2018-11-01

2621 Cities of the future, visualizing climate change to inspire actions

Bastin, J. F.; Clarke, E.; Elliott, T.; Hart, S.; Ven den Hoogen, J.; Hordijk, I.; Ma, H.; Majumder, S.; Manoli, G.; Maschler, J.; Mo, L.; Routh, D.; Yu, K.; Zohner, C.; Crowther, T.

10.1101/458018 — scientific communication and education — Posted on 2018-11-01

2622 Studying Human Behaviour with Virtual Reality: The Unity Experiment Framework

Brookes, J.; Warburton, M.; Alghadier, M.; Mushtaq, F.; Mon-Williams, M.

10.1101/459339 — neuroscience — Posted on 2018-11-01

2623 Emotional recognition training modifies neural response to emotional faces but does not improve mood in healthy volunteers with high levels of depressive symptoms

Penton-Voak, I. S.; Adams, S.; Button, K. S.; Fluharty, M.; Dalili, M.; Browning, M.; Holmes, E.; Harmer, C.; Munafo, M. R.

10.1101/335042 — neuroscience — Posted on 2018-11-01

2624 Enhancer redundancy predicts gene pathogenicity and informs complex disease gene discovery

Wang, X.; Goldstein, D. B.

10.1101/459123 — genomics — Posted on 2018-11-01

2625 Minimization of cross-talk between Spindle Assembly Checkpoint silencing and error correction

Roy, B.; Verma, V.; Sim, J.; Fontan, A.; Joglekar, A. P.

10.1101/459594 — cell biology — Posted on 2018-11-01

2626 Instantaneous isotropic volumetric imaging of fast biological processes

Wagner, N.; Norlin, N.; Gierten, J.; de Medeiros, G.; Balazs, B.; Wittbrodt, J.; Hufnagel, L.; Prevedel, R.

10.1101/459370 — bioengineering — Posted on 2018-11-01

2627 Efficient reverse breeding by VIGS-mediated transient crossover reduction

Calvo-Baltanas, V.; Wijnen, C. L.; Lukhovitskaya, N.; de Snoo, C. B.; Hohenwarter, L.; de jong, H.; Schnittger, A.; Wijnker, E.

10.1101/459016 — plant biology — Posted on 2018-11-01

2628 One Model to Rule Them All: An Integrative Approach to Matrix-Based Analyses in Neuroimaging Connectomics

Chen, G.; Bürkner, P.-C.; Taylor, P. A.; Li, Z.; Yin, L.; Glen, D. R.; Kinnison, J. K.; Cox, R. W.; Pessoa, L.

10.1101/459545 — neuroscience — Posted on 2018-11-01

2629 Differential attenuation of β2 integrin-dependent and -independent neutrophil migration by Ly6G ligation

Cunin, P.; Lee, P.; Kim, E.; Schmider, A.; Cloutier, N.; Pare, A.; Gunzer, M.; Soberman, R.; Lacroix, S.; Boilard, E.; Lefort, C.; Nigrovic, P.

10.1101/458760 — immunology — Posted on 2018-11-01

2630 Uncovering human transcription factor interactions associated with genetic variants, novel DNA motifs, and repetitive elements using enhanced yeast one-hybrid assays

Sewell, J. A.; Shrestha, S.; Santoso, C. S.; Forchielli, E.; Carrasco Pro, S.; Martinez, M.; Fuxman Bass, J. I.

10.1101/459305 — genomics — Posted on 2018-11-01

2631 Harmonizing Clinical Sequencing And Interpretation For The eMERGE III Network

The eMERGE Consortium, ; Zouk, H.; Venner, E.; Muzny, D. M.; Lennon, N.; Rehm, H. L.; Gibbs, R. A.

10.1101/457523 — genomics — Posted on 2018-11-01

2632 The ability of ddRAD-Seq to estimate genetic diversity and genetic introgression in endangered native livestock

Tezuka, A.; Takasu, M.; Tozaki, T.; Nagano, A. J.

10.1101/454108 — genomics — Posted on 2018-11-01

2633 Inferring the ancestry of everyone

Kelleher, J.; Wong, Y.; Albers, P.; Wohns, A. W.; McVean, G.

10.1101/458067 — evolutionary biology — Posted on 2018-11-01

2634 Many options, few solutions: over 60 million years snakes converged on a few optimal venom formulations

Barua, A.; Mikheyev, A.

10.1101/459073 — evolutionary biology — Posted on 2018-11-01

2635 Aneuvis: Web-based exploration of numerical chromosomal variation in single cells

Pique, D. G.; Andriani, G. A.; Maggi, E.; Zimmerman, S. E.; Greally, J. M.; Montagna, C.; Mar, J. C.

10.1101/459735 — bioinformatics — Posted on 2018-11-01

2636 Multicolor fluorescent imaging by space-constrained computational hyperspectral imaging

Wang, Y.; Yang, B.; Feng, S.; Pessino, V.; Huang, B.

10.1101/458869 — bioengineering — Posted on 2018-11-01

2637 A comparison of bivariate frequency domain measures of electrophysiological connectivity

Pascual-Marqui, R. D.; Faber, P.; Kinoshita, T.; Kochi, K.; Milz, P.; Nishida, K.; Yoshimura, M.

10.1101/459503 — neuroscience — Posted on 2018-11-01

2638 Widespread suppression of high-order visual cortex during blinks and external predictable visual interruptions

Golan, T.; Grossman, S.; Deouell, L. Y.; Malach, R.

10.1101/456566 — neuroscience — Posted on 2018-11-01

2639 Revealing metabolic flexibility of Candidatus Accumulibacter phosphatis through redox cofactor analysis and metabolic network modeling

Guedes da Silva, L.; Olavarria Gamez, K.; Castro Gomes, J.; Akkermans, K.; Welles, L.; Abbas, B.; van Loosdrecht, M. C. M.; Wahl, S. A.

10.1101/458331 — microbiology — Posted on 2018-11-01

2640 Adenosine Deaminase Acting on RNA 1 Associates with Orf Virus OV20.0 and Enhances Viral Replication

Liao, G.-R.; Tseng, Y.-Y.; Tseng, J.-Y.; Lin, F.-Y.; Yamada, Y.; Liu, H.-P.; Kuan, C.-Y.; Hsu, W.-L.

10.1101/459149 — microbiology — Posted on 2018-11-01

2641 Landscape genomics of an obligate mutualism: discordant population structures between a leafcutter-ant and its fungal cultivars

Smith, C. C.; Weber, J. N.; Mikheyev, A. S.; Roces, F.; Bollazzi, M.; Kellner, K.; Seal, J.; Mueller, U. G.

10.1101/458950 — evolutionary biology — Posted on 2018-11-01

2642 Sprouting and anastomosis in the Drosophila trachea and the vertebrate vasculature: similarities and differences in cell behaviour

Kotini, M. P.; Andaloussi Mäe, M.; Belting, H.-G.; Betsholtz, C.; Affolter, M.

10.1101/458281 — developmental biology — Posted on 2018-11-01

2643 Cysteine dioxygenase 1 is a metabolic liability for non-small cell lung cancer

Kang, Y. P.; Torrente, L.; Liu, M.; Asara, J. M.; Dibble, C. C.; DeNicola, G. M.

10.1101/459602 — cancer biology — Posted on 2018-11-01

2644 Turning and twisting motion of chromosomes as an accelerating force to align homologous chromosomes during meiosis

Takao, K.; Takamiya, K.; Ding, D.-Q.; Haraguchi, T.; Hiraoka, Y.; Nishimori, H.; Awazu, A.

10.1101/459271 — biophysics — Posted on 2018-11-01

2645 GenPipes: an open-source framework for distributed and scalable genomic analyses

Bourgey, M.; Dali, R.; Eveleigh, R.; Chen, K. C.; Letourneau, L.; Fillon, J.; Michaud, M.; Caron, M.; Sandoval, J.; Lefebvre, F.; Leveque, G.; Mercier, E.; Bujold, D.; Marquis, P.; Tran Van, P.; Morais, D.; Tremblay, J.; Shao, X.; Henrion, E.; Gonzalez, E.; Quirion, P.-O.; Caron, B.; Bourque, G.

10.1101/459552 — bioinformatics — Posted on 2018-11-01

2646 CasLocusAnno: a web-based server for annotating Cas loci and their corresponding (sub)types

Dong, C.; Zeng, Z.; Wen, Q.-F.; Liu, S.; Du, M.-Z.; Gao, Y.-Z.; Liao, Z.; Rao, N.; Huang, J.; Guo, F.-B.

10.1101/459131 — bioinformatics — Posted on 2018-11-01

2647 Osmotic Swelling Responses are Conserved Across Cartilaginous Tissues with Varied Sulfated-Glycosaminoglycan Contents

Baylon, E. G.; Levenston, M. E.

10.1101/459115 — bioengineering — Posted on 2018-11-01

2648 Atypical functional connectivity in Tourette syndrome differs between children and adults

Nielsen, A.; Gratton, C.; Church, J. A.; Dosenbach, N. U.; Black, K. J.; Petersen, S. E.; Schlaggar, B. L.; Greene, D. J.

10.1101/459560 — neuroscience — Posted on 2018-11-01

2649 Structuring Time in Human Lateral Entorhinal Cortex

Bellmund, J. L. S.; Deuker, L.; Doeller, C. F.

10.1101/458133 — neuroscience — Posted on 2018-11-01

2650 Temporal evolution from retinal image size to perceived size in human visual cortex

Chen, J.; Sperandio, I.; Henry, M. J.; Goodale, M. A.

10.1101/455139 — neuroscience — Posted on 2018-11-01

2651 Limited dispersion and quick degradation of environmental DNA in fish ponds inferred by metabarcoding

Li, J.; Lawson Handley, L. J.; Harper, L. R.; Brys, R.; Watson, H. V.; Hänfling, B.

10.1101/459321 — molecular biology — Posted on 2018-11-01

2652 In depth biochemical and structural analysis of a Gram-positive type IV pilus

Berry, J.-L.; Gurung, I.; Anonsen, J.-H.; Spielman, I.; Harper, E.; Hall, A. M. J.; Goosens, V. J.; Raynaud, C.; Biais, N.; Matthews, S. J.; Pelicic, V.

10.1101/459388 — microbiology — Posted on 2018-11-01

2653 Experimental Human Challenge Reveals Distinct Mechanisms of Acquisition or Protection Against Pneumococcal Colonization

10.1101/459495 — immunology — Posted on 2018-11-01

2654 Chimpanzee SIV Envelope trimer: structure and deployment as an HIV vaccine template

Andrabi, R.; Pallesen, J.; Allen, J.; Song, G.; Zhang, J.; de Val, N.; Gegg, G.; Porter, K.; Su, C.-Y.; Pauthner, M.; Newman, A.; Bouton-Vervelle, H.; Garces, F.; Wilson, I. A.; Crispin, M.; Hahn, B. H.; Haynes, B. F.; Verkoczy, L.; Ward, A. B.; Burton, D. R.

10.1101/459164 — immunology — Posted on 2018-11-01

2655 High-throughput determination of the antigen specificities of T cell receptors in single cells

Zhang, S.-Q.; Ma, K.-Y.; Schonnesen, A. A.; Zhang, M.; He, C.; Sun, E.; Williams, C. M.; Jia, W.; Jiang, N.

10.1101/457069 — immunology — Posted on 2018-11-01

2656 Genome-Wide Association Studies of malaria susceptibility and resistance: progress, pitfalls and prospects

Damena, D.; Denis, A.; Golassa, L.; Chimusa, E.

10.1101/456707 — genomics — Posted on 2018-11-01

2657 Functional Interrogation of Lynch Syndrome Associated MSH2 Missense Variants Using CRISPR-Cas9 Gene Editing in Human Embryonic Stem Cells

Rath, A.; Mishra, A.; Duque Ferreira, V.; Hu, C.; Grady, J. P.; Heinen, C. D.

10.1101/459586 — genomics — Posted on 2018-11-01

2658 Largest genome-wide association study for PTSD identifies genetic risk loci in European and African ancestries and implicates novel biological pathways

Nievergelt, C. M.; Maihofer, A. X.; Klengel, T.; Atkinson, E. G.; Chen, C.-Y.; Choi, K. W.; Coleman, J. R. I.; Dalvie, S.; Duncan, L. E.; Logue, M. W.; Provost, A.; Ratanatharathorn, A.; Stein, M. B.; Torres, K.; Aiello, A. E.; Almli, L. M.; Amstadter, A. B.; Andersen, S. B.; Andreassen, O. A.; Arbisi, P. A.; Ashley-Koch, A. E.; Austin, S. B.; Avdibegovic, E.; Babic, D.; Baekvad-Hansen, M.; Baker, D. G.; Beckham, J. C.; Bierut, L. J.; Bisson, J. I.; Boks, M. P.; Bolger, E. A.; Borglum, A. D.; Bradley, B.; Brashear, M.; Breen, G.; Bryant, R. A.; Bustamante, A. C.; Bybjerg-Grauholm, J.; Calabres

10.1101/458562 — genetics — Posted on 2018-11-01

2659 A multi-year survey of helminths from the gastrointestinal tract of wild saddleback (Leontocebus weddelli) and emperor (Saguinus imperator) tamarins

Erkenswick, G. A.; Watsa, M.; Gozalo, A. S.; Dudaie, S.; Bailey, L.; Muranda, K. S.; Kuziez, A.; Parker, P. G.

10.1101/459099 — ecology — Posted on 2018-11-01

2660 ANALYSING PATTERNS IN POPULATION DYNAMICS USING REPEATED POPULATION SURVEYS WITH THREE TYPES OF DETECTION DATA

PERON, G.; Garel, M.

10.1101/459537 — ecology — Posted on 2018-11-01

2661 Discrete Mechanical Growth Model for Plant Tissue

Weise, L. D.; ten Tusscher, K. H. W. J.

10.1101/459412 — biophysics — Posted on 2018-11-01

2662 Structural and Practical Identifiability of Dual-input Kinetic Modeling in Dynamic PET of Liver Inflammation

Zuo, Y.; Sarkar, S.; Corwin, M. T.; Olson, K.; Badawi, R. D.; Wang, G.

10.1101/458927 — bioengineering — Posted on 2018-11-01

2663 White Matter Microstructure Correlates of General and Specific Second-Order Factors of Psychopathology

Hinton, K. E.; Lahey, B. B.; Villalta-Gil, V.; Meyer, F. A. C.; Burgess, L. L.; Chodes, L. K.; Applegate, B.; Van Hulle, C. A.; Landman, B. A.; Zald, D. H.

10.1101/459396 — neuroscience — Posted on 2018-11-01

2664 Common spatiotemporal processing of visual features shapes object representation

Papale, P.; Betta, M.; Handjaras, G.; Malfatti, G.; Cecchetti, L.; Rampinini, A.; Pietrini, P.; Ricciardi, E.; Turella, L.; Leo, A.

10.1101/459214 — neuroscience — Posted on 2018-11-01

2665 Differences in effective ploidy as drivers of genome-wide endosperm expression asymmetries and seed failure in wild tomato hybrids

Städler, T.; Florez-Rueda, A. M.; Roth, M.

10.1101/459925 — genetics — Posted on 2018-11-01

2666 An ER-resident calcium binding protein modulates egress of malaria parasites from erythrocytes

Fierro, M. A.; HortuaTriana, M. A.; Brooks, C. F.; Asady, B.; Li, C.; Moreno, S. N. J.; Muralidharan, V.

10.1101/457481 — cell biology — Posted on 2018-11-01

2667 Gkmexplain: Fast and Accurate Interpretation of Nonlinear Gapped k-mer Support Vector Machines Using Integrated Gradients

Shrikumar, A.; Prakash, E.; Kundaje, A.

10.1101/457606 — bioinformatics — Posted on 2018-11-01

2668 Genome based meta-QTL analysis of grain weight in tetraploid wheat identifies rare alleles of GRF4 associated with larger grains

Avni, R.; Oren, L.; Shabtai, G.; Assili, S.; Pozniak, C.; Hale, I.; Ben-David, R.; Peleg, Z.; Distelfeld, A.

10.1101/415240 — plant biology — Posted on 2018-11-01

2669 A DNA-binding protein tunes septum placement during Bacillus subtilis sporulation

Brown, E. E.; Miller, A. K.; Inna, K. V.; Otto, R. M.; Sacchettini, J. C.; Herman, J. K.

10.1101/459685 — microbiology — Posted on 2018-11-01

2670 Natural avirulent Shigella boydii strain in the Brazilian Amazon lacks major virulence genes and present Type II, Type III and Type VI Secretion Systems

Serra, P. T.; Vercosa, J. V.; Souza, R. M. d.; Dantas, P. I. d. S.; Rezende, A. d. O.; Barros, A. P. M.; Souza, A. R. d.; Ribeiro-Alves, M.; Pereira, M. d. S. F.; Balieiro, A.; Raiol, T.; Mariuba, L. A. M.; Moraes, M. O. d.; Epiphanio, S.; Matos, N. B.; Mota, A. J. d.; Pontes, G. S.; Magalhaes Junior, P. F. C. d.; Lacerda, M. V. G. d.; Nogueira, P. A.; Orlandi, P. P.

10.1101/459701 — microbiology — Posted on 2018-11-01

2671 Homeostatic Inhibitory Control of Cortical Hyperexcitability in Fragile X Syndrome

Cea-Del Rio, C. A.; Nunez-Parra, A. F.; Freedman, S.; Restrepo, D.; Huntsman, M. M.

10.1101/459511 — neuroscience — Posted on 2018-11-01

2672 Predicting JNK1 Inhibitors Regulating Autophagy in Cancer using Random Forest Classifier

Kumari, C.; Subbarao, N.; Abulaish, M.

10.1101/459669 — bioinformatics — Posted on 2018-11-01

2673 Taxonomy, ecology and distribution of Juniperus oxycedrus L. group in the Mediterranean Region using morphometric, phytochemical and bioclimatic approaches.

Cano-Ortiz, A.; Musarella, C. M.; Pinar Fuentes, J. C.; Pinto Gomes, C. J.; Spampinato, G.; CANO, E.

10.1101/459651 — plant biology — Posted on 2018-11-01

2674 TLR3 deficiency exacerbates the loss of epithelial barrier function during genital tract Chlamydia muridarum infection

Kumar, R.; Gong, H.; Liu, L.; Ramos-Solis, N.; Seye, C. I.; Derbigny, W. A.

10.1101/459636 — immunology — Posted on 2018-11-01

2675 Early signals of vaccine driven perturbation seen in pneumococcal carriage population genomic data

Chaguza, C.; HEINSBROEK, E.; GLADSTONE, R. A.; TAFATATHA, T.; ALAERTS, M.; PENO, C.; CORNICK, J. E.; MUSICHA, P.; BAR-ZEEV, N.; KAMNGONA, A.; KADIOGLU, A.; MCGEE, L.; HANAGE, W. P.; BREIMAN, R. F.; HEYDERMAN, R. S.; FRENCH, N.; EVERETT, D. B.; BENTLEY, S. D.

10.1101/459693 — genomics — Posted on 2018-11-01

2676 Inferring novel lncRNA associated with Ventricular septal defect by DNA methylation interaction network

Zhang, M.; Gu, Y.; Su, M.; Zhang, S.; Chen, C.; Lv, W.; Zhang, Y.

10.1101/459677 — developmental biology — Posted on 2018-11-01

2677 A pilot study of the effects of Mycoplasma ovipneumoniae exposure on domestic lamb growth and performance

Besser, T. E.; Levy, J.; Ackerman, M.; Nelson, D.; Manlove, K.; Potter, K.; Busboom, J.; Benson, M.

10.1101/459628 — microbiology — Posted on 2018-11-01

2678 The effect of heavy metal contamination on human and animal health in the vicinity of a zinc smelter

Shen, X.; Chi, Y.; Xiong, K.

10.1101/459644 — ecology — Posted on 2018-11-01

2679 DUETT quantitatively identifies known and novel events in nascent RNA structural dynamics from chemical probing data

Xue, A. Y.; Yu, A. M.; Lucks, J. B.; Bagheri, N.

10.1101/458703 — bioinformatics — Posted on 2018-11-01

2680 Berberine chloride ameliorated PI3K/Akt-p/SIRT-1/PTEN signaling pathway in insulin resistance syndrome-induced rats

El-Zeftawy, M. M.; Ghareeb, D. A.

10.1101/459610 — biochemistry — Posted on 2018-11-01

2681 Pyramids and cascades: a synthesis of food chain functioning and stability

Barbier, M.; Loreau, M.

10.1101/361246 — ecology — Posted on 2018-11-01

2682 An examination of multivariable Mendelian randomization in the single sample and two-sample summary data settings.

Sanderson, E.; Davey Smith, G.; Windmeijer, F.; Bowden, J.

10.1101/306209 — epidemiology — Posted on 2018-11-01

2683 Market Smells: Field Methods for Olfactory Ability in the Built Environment

Hoover, K. C.; Roberts, J.; Fedurek, P.; Botescu, D.; Berbesque, J. C.

10.1101/270744 — ecology — Posted on 2018-11-01

2684 Sound induces change in orientation preference of V1 neurons: Audio-visual cross-influence

Chanauria, N.; Bharmauria, V.; Bachatene, L.; Cattan, S.; Rouat, J.; Molotchnikoff, S.

10.1101/269589 — neuroscience — Posted on 2018-11-01

2685 Tensor decomposition--based unsupervised feature extraction for integrated analysis of TCGA data on microRNA expression and promoter methylation of genes in ovarian cancer

Taguchi, Y.-h.; Ng, K.-L.

10.1101/380071 — bioinformatics — Posted on 2018-11-01

2686 Single-cell quantification of the concentration and dissociation constant of endogenous proteins

Komatsubara, A. T.; Goto, Y.; Kondo, Y.; Matsuda, M.; Aoki, K.

10.1101/236422 — biochemistry — Posted on 2018-11-01

2687 Transcranial recording of electrophysiological neural activity in the rodent brain in vivo using functional photoacoustic imaging of near-infrared voltage-sensitive dye

Kang, J.; Zhang, H. K.; Kadam, S. D.; Fedorko, J.; Valentine, H.; Malla, A. P.; Yan, P.; Kang, J. U.; Rahmim, A.; Gjedde, A.; Loew, L. M.; Wong, D. F.; Boctor, E. M.

10.1101/202408 — neuroscience — Posted on 2018-11-01

2688 Long Non-Coding RNA LncKdm2b Regulates Cortical Neuronal Differentiation by Cis-Activating Kdm2b

Li, W.; Shen, W.; Zhang, B.; Tian, K.; Li, Y.; Mu, L.; Luo, Z.; Zhong, X.; Wu, X.; Liu, Y.; Zhou, Y.

10.1101/459289 — molecular biology — Posted on 2018-11-01

2689 Genome-wide identification of alternative splicing events that regulate protein transport across the secretory pathway

Neumann, A.; Schindler, M.; Olofsson, D.; Wilhelmi, I.; Schürmann, A.; Heyd, F.

10.1101/459263 — cell biology — Posted on 2018-11-01

2690 AMPK promotes Notch1 stability to potentiate hypoxia-induced breast cancer aggressiveness

Lahiry, M.; Rangarajan, A.

10.1101/458489 — cancer biology — Posted on 2018-11-01

Archive, 2018-11