bioRxiv directory

Gary F Marcus;Adam Henry Marblestone;Thomas Linus Dean;

10.1101/010983 — Neuroscience — Posted on 2014-10-31

3 Analyses of Eurasian wild and domestic pig genomes reveals long-term gene-flow during domestication

Laurent A.F. Frantz;Joshua Schraiber;Ole Madsen;Hendrik-Jan Megens;Alex Cagan;Mirte Bosse;Yogesh Paudel;Richard P.M.A. Crooijmans;Greger Larson;Martien A.M. Groenen;

10.1101/010959 — Evolutionary Biology — Posted on 2014-10-31

4 Establishing the characteristics of an effective pharmacogenetic test for clozapine induced agranulocytosis

Moira Verbelen;David A Collier;Dan Cohen;James H MacCabe;Cathryn M Lewis;

10.1101/010900 — Genetics — Posted on 2014-10-31

5 Arousal and locomotion make distinct contributions to cortical activity patterns and visual encoding

Martin Vinck;Renata Batista-Brito;Ulf Knoblich;Jessica A Cardin;

10.1101/010751 — Neuroscience — Posted on 2014-10-30

6 When is selection effective?

Simon Gravel;

10.1101/010934 — Genetics — Posted on 2014-10-30

7 Comparative genomics reveals the origins and diversity of arthropod immune systems

William J Palmer;Francis M Jiggins;

10.1101/010942 — Evolutionary Biology — Posted on 2014-10-30

8 The Histology of Nanomia bijuga (Hydrozoa: Siphonophora)

Samuel H Church;Stefan Siebert;Pathikrit Bhattacharyya;Casey W Dunn;

10.1101/010868 — Zoology — Posted on 2014-10-29

9 Landscape and evolutionary dynamics of terminal-repeat retrotransposons in miniature (TRIMs) in 48 whole plant genomes

Dongying Gao;Yupeng Li;Brian Abernathy;Scott Jackson;

10.1101/010850 — Evolutionary Biology — Posted on 2014-10-29

10 Exploring the phenotypic space and the evolutionary history of a natural mutation in Drosophila melanogaster

Anna Ullastres;Natalia Petit;Josefa González;

10.1101/010918 — Evolutionary Biology — Posted on 2014-10-29

11 CNVkit: Copy number detection and visualization for targeted sequencing using off-target reads

Eric Talevich;A. Hunter Shain;Thomas Botton;Boris C. Bastian;

10.1101/010876 — Bioinformatics — Posted on 2014-10-29

12 Genome-wide comparative analysis reveals human- mouse regulatory landscape and evolution

Olgert Denas;Richard Sandstrom;Yong Cheng;Kathryn Beal;Javier Herrero;Ross Hardison;James Taylor;

10.1101/010926 — Bioinformatics — Posted on 2014-10-30

13 Enhanced Transcriptome Maps from Multiple Mouse Tissues Reveal Evolutionary Constraint in Gene Expression for Thousands of Genes

Dmitri Pervouchine;Sarah Djebali;Alessandra Breschi;Carrie A Davis;Pablo Prieto Barja;Alex Dobin;Andrea Tanzer;Julien Lagarde;Chris Zaleski;Lei-Hoon See;Meagan Fastuca;Jorg Drenkow;Huaien Wang;Giovanni Bussotti;Baikang Pei;Suganthi Balasubramanian;Jean Monlong;Arif Harmanci;Mark Gerstein;Michael A Beer;Cedric Notredame;Roderic Guigo;Thomas R Gingeras;

10.1101/010884 — Bioinformatics — Posted on 2014-10-30

14 Supervised learning sets benchmark for robust spike rate inference from calcium imaging signals

Lucas Theis;Philipp Berens;Emmanouil Froudarakis;Jacob Reimer;Miroslav Roman-Roson;Thomas Baden;Thomas Euler;Andreas S Tolias;Matthias Bethge;

10.1101/010777 — Neuroscience — Posted on 2014-10-28

15 Genome-wide association study of carbon and nitrogen metabolism in the maize nested association mapping population

Nengyi Zhang;Yves Gibon;Nicholas Lepak;Pinghua Li;Lauren Dedow;Charles Chen;Yoon-Sup So;Jason Wallace;Karl Kremling;Peter Bradbury;Thomas Brutnell;Mark Stitt;Edward Buckler;

10.1101/010785 — Genetics — Posted on 2014-10-28

16 Collective action and the collaborative brain

Sergey Gavrilets;

10.1101/009746 — Evolutionary Biology — Posted on 2014-10-28

17 Introns structure patterns of variation in nucleotide composition in Arabidopsis thaliana and rice protein-coding genes

Adrienne Ressayre;Sylvain Glemin;Pierre Montalent;Laurana Serres-Giardi;Christine Dillmann;Johann Joets;

10.1101/010819 — Evolutionary Biology — Posted on 2014-10-28

18 Settlement, growth and survival of eastern oysters on alternative reef substrates

Seth J. Theuerkauf;Russell P. Burke;Romuald N. Lipcius;

10.1101/010793 — — Posted on 2014-10-28

19 A framework for the analysis of symmetric and asymmetric divisions in developmental processes

Pau Rué;Yung Hae Kim;Hjalte List Larsen;Anne Grapin-Botton;Alfonso Martinez Arias;

10.1101/010835 — Developmental Biology — Posted on 2014-10-28

20 FORMAL: A model to identify organisms present in metagenomes using Monte Carlo Simulation

Genivaldo Gueiros Z. Silva;Bas E. Dutilh;Robert A. Edwards;

10.1101/010801 — Bioinformatics — Posted on 2014-10-28

21 Extrapolating histone marks across developmental stages, tissues, and species: an enhancer prediction case study

John Anthony Capra;

10.1101/010710 — Genomics — Posted on 2014-10-25

22 DNA methylation and gene expression dynamics during cotton ovule and fiber development

Qingxin Song;Xueying Guan;Z. Jeffrey Chen;

10.1101/010702 — Genomics — Posted on 2014-10-27

23 Extensive capsule locus variation and large-scale genomic recombination within the Klebsiella pneumoniae clonal complex 258/11.

Kelly L Wyres;Claire Gorrie;David J Edwards;Heiman FL Wertheim;Li Yang Hsu;Nguyen Van Kinh;Ruth Zadoks;Stephen Baker;Kathryn E Holt;

10.1101/010769 — Genomics — Posted on 2014-10-27

24 A 22,403 marker composite genetic linkage map for cassava (Manihot esculenta Crantz) derived from ten populations

International Cassava Genetic Map Consortium;

10.1101/010637 — Genetics — Posted on 2014-10-24

25 A systematic survey of an intragenic epistatic landscape

Claudia Bank;Ryan T. Hietpas;Jeffrey D. Jensen;Daniel N.A. Bolon;

10.1101/010645 — Evolutionary Biology — Posted on 2014-10-23

26 Bayesian analyses of Yemeni mitochondrial genomes suggest multiple migration events with Africa and Western Eurasia

Deven Nikunj Vyas;Andrew Kitchen;Aida Teresa Miró-Herrans;Laurel Nichole Pearson;Ali Al-Meeri;Connie Jo Mulligan;

10.1101/010629 — Evolutionary Biology — Posted on 2014-10-23

27 Multicellularity makes somatic differentiation evolutionarily stable

Mary Elizabeth Wahl;Andrew Wood Murray;

10.1101/010728 — Evolutionary Biology — Posted on 2014-10-25

28 Interplay of TGFb superfamily members governs optic fissure closure

Stephan Heermann;Priska Eckert;Juan L Mateo;Eleni Roussa;Belal Rahhal;Aimee Zuniga;Kerstin Krieglstein;Joachim Wittbrodt;

10.1101/010652 — Developmental Biology — Posted on 2014-10-24

29 SomaticSignatures: Inferring Mutational Signatures from Single Nucleotide Variants

Julian S. Gehring;Bernd Fischer;Michael Lawrence;Wolfgang Huber;

10.1101/010686 — Bioinformatics — Posted on 2014-10-24

30 High-field Functional Magnetic Resonance Imaging of Vocalization Processing in Marmosets

Srivatsun Sadagopan;Nesibe Z Temiz;Henning U Voss;

10.1101/010561 — Neuroscience — Posted on 2014-10-20

31 Automated placement of stereotactic injections using a laser scan of the skull

Margaret Henderson;Vadim Pinskiy;Alexander Tolpygo;Stephen Savoia;Pascal Grange;Partha Mitra;

10.1101/010603 — Neuroscience — Posted on 2014-10-22

32 Effect sizes and standardization in neighborhood models of forest stands

Peter Stoll;David J Murrell;David M Newbery;

10.1101/010520 — — Posted on 2014-10-20

33 Heterozygous gene truncation delineates the human haploinsufficient genome

István Bartha;Antonio Rausell;Paul McLaren;Manuel Tardaguila;Pejman Mohammadi;Nimisha Chaturvedi;Jacques Fellay;Amalio Telenti;

10.1101/010611 — Genomics — Posted on 2014-10-23

34 Deciphering the genetic and transcriptional basis of cross-stress responses in Escherichia coli under complex evolutionary scenarios

Violeta Zorraquino-Salvo;Semarhy Quinones-Soto;Minseung Kim;Navneet Rai;Ilias Tagkopoulos;

10.1101/010595 — Evolutionary Biology — Posted on 2014-10-24

35 Deciphering the genetic and transcriptional basis of cross-stress responses in Escherichia coli under complex evolutionary scenarios

Violeta Zorraquino-Salvo;Semarhy Quinones-Soto;Minseung Kim;Navneet Rai;Ilias Tagkopoulos;

10.1101/010595 — Evolutionary Biology — Posted on 2014-10-22

36 Heterochrony explains convergent testis evolution in primates

Ekin Saglican;Ezgi Ozkurt;Haiyang Hu;Babur Erdem;Philipp Khaitovich;Mehmet Somel;

10.1101/010553 — Evolutionary Biology — Posted on 2014-10-21

37 A theoretical justification for single molecule peptide sequencing

Jagannath Swaminathan;Alexander A. Boulgakov;Edward M. Marcotte;

10.1101/010587 — Bioinformatics — Posted on 2014-10-22

38 Cooperative development of logical modelling standards and tools with CoLoMoTo

Aurélien Naldi;Pedro T Monteiro;Christoph Müssel;the Consortium for Logical Models and Tools;Hans A Kestler;Denis Thieffry;Ioannis Xenarios;Julio Saez-Rodriguez;Tomas Helikar;Claudine Chaouiya;

10.1101/010504 — Systems Biology — Posted on 2014-10-19

39 Using more than the oldest fossils: Dating Osmundaceae by three Bayesian clock approaches

Guido Grimm;Pashalia Kapli;Benjamin Bomfleur;Stephen McLoughlin;Susanne S Renner;

10.1101/010496 — Plant Biology — Posted on 2014-10-17

40 Transcriptome Sequencing Reveals Widespread Gene-Gene and Gene-Environment Interactions

Alfonso Buil;Andrew A Brown;Tuuli Lappalainen;Ana Viñuela;Matthew N Davies;Houfeng F Zheng;Brent J Richards;Daniel Glass;Kerrin S Small;Richard Durbin;Timothy D Spector;Emmanouil T Dermitzakis;

10.1101/010546 — Genomics — Posted on 2014-10-27

41 Transcriptome Sequencing Reveals Widespread Gene-Gene and Gene-Environment Interactions

Alfonso Buil;Andrew A Brown;Tuuli Lappalainen;Ana Viñuela;Matthew N Davies;Houfeng F Zheng;Brent J Richards;Daniel Glass;Kerrin S Small;Richard Durbin;Timothy D Spector;Emmanouil T Dermitzakis;

10.1101/010546 — Genomics — Posted on 2014-10-19

42 Integrative Genome-wide Analysis of the Determinants of RNA Splicing in Kidney Renal Clear Cell Carcinoma

Kjong-Van Lehmann;Andre Kahles;Cyriac Kandoth;William Lee;Nikolaus Schultz;Oliver Stegle;Gunnar Rätsch;

10.1101/010256 — Cancer Biology — Posted on 2014-10-19

43 Ancestry Composition: A Novel, Efficient Pipeline for Ancestry Deconvolution

Eric Y Durand;Chuong B Do;Joanna L Mountain;J. Michael Macpherson;

10.1101/010512 — Bioinformatics — Posted on 2014-10-18

44 GalDrive: Pipeline for comparative identification of driver mutations using the Galaxy framework

Saket Kumar Choudhary;Santosh B Noronha;

10.1101/010538 — Bioinformatics — Posted on 2014-10-19

45 Making sense of RNA-Seq data: from low-level processing to functional analysis

Oleg Moskvin;Sean McIlwain;Irene Ong;

10.1101/010488 — Bioinformatics — Posted on 2014-10-17

46 Antimicrobial peptides play a functional role in bumblebee anti-trypanosome defense

Soni Deshwal;Eamonn Mallon;

10.1101/010413 — Immunology — Posted on 2014-10-16

47 Social evolution and genetic interactions in the short and long term

Jeremy Van Cleve;

10.1101/010371 — Evolutionary Biology — Posted on 2014-10-15

48 An open framework for biodiversity databases

Miklós Bán;Zsolt Végvári;Sándor Bérces;

10.1101/010405 — Bioinformatics — Posted on 2014-10-16

49 Publishing DisGeNET as Nanopublications

Núria Queralt Rosinach;Tobias Kuhn;Christine Chichester;Michel Dumontier;Ferran Sanz;Laura Inés Furlong;

10.1101/010397 — Bioinformatics — Posted on 2014-10-16

50 NeuroVault.org: A web-based repository for collecting and sharing unthresholded statistical maps of the human brain

Krzysztof Jacek Gorgolewski;Gael Varoquaux;Gabriel Rivera;Yannick Schwartz;Satrajit S. Ghosh;Camille Maumet;Vanessa Sochat;Thomas E. Nichols;Russell A. Poldrack;Jean-Baptiste Poline;Tal Yarkoni;Daniel S. Margulies;

10.1101/010348 — Neuroscience — Posted on 2014-10-14

51 A simple method for constructing magnetic Escherichia coli

Yong-jun Lu;Mengyi Sun;

10.1101/010249 — Microbiology — Posted on 2014-10-10

52 Recent evolution of the mutation rate and spectrum in Europeans

Kelley Harris;

10.1101/010314 — Genomics — Posted on 2014-10-14

53 Whole-genome sequencing is more powerful than whole-exome sequencing for detecting exome variants

Aziz Belkadi;Alexandre Bolze;Yuval Itan;Aurelie Cobat;Quentin B Vincent;Alexander Antipenko;Lei Shang;Bertrand Boisson;Jean-Laurent Casanova;Laurent Abel;

10.1101/010363 — Genetics — Posted on 2014-10-14

Brandon S. Cooper;Chad Burrus;Chao Ji;Matthew W. Hahn;Kristi L. Montooth;

10.1101/010355 — Evolutionary Biology — Posted on 2014-10-14

55 Panpulmonate habitat transitions: tracing the evolution of Acochlidia (Heterobranchia,Gastropoda)

Katharina M. Jörger;Bastian Brenzinger;Timea P. Neusser;Alexander V. Martynov;Nerida G. Wilson;Michael Schrödl;

10.1101/010322 — Evolutionary Biology — Posted on 2014-10-15

56 How predator hunting-modes affect prey behaviour: Capture deterrence in Drosophila melanogaster

Abhijna Parigi;Cody Porter;Megan Cermak;William R. Pitchers;Ian Dworkin;

10.1101/010330 — Animal Behavior and Cognition — Posted on 2014-10-14

57 FinisherSC : A repeat-aware tool for upgrading de-novo assembly using long reads

Ka Kit Lam;Kurt LaButti;Asif Khalak;David Tse;

10.1101/010215 — Bioinformatics — Posted on 2014-10-14

58 Association Mapping across Numerous Traits Reveals Patterns of Functional Variation in Maize

Jason G Wallace;Peter Bradbury;Nengyi Zhang;Yves Gibon;Mark Stitt;Edward Buckler;

10.1101/010207 — Genetics — Posted on 2014-10-10

59 Species delimitation and phylogeny estimation under the multispecies coalescent

Graham R Jones;

10.1101/010199 — Evolutionary Biology — Posted on 2014-10-09

60 Quantification of GC-biased gene conversion in the human genome

Sylvain Glemin;Peter F Arndt;Philipp W Messer;Dmitri Petrov;Nicolas Galtier;Laurent Duret;

10.1101/010173 — Evolutionary Biology — Posted on 2014-10-09

61 Massive bursts of transposable element activity in Drosophila

Robert Kofler;Viola Nolte;Christian Schlötterer;

10.1101/010231 — Evolutionary Biology — Posted on 2014-10-10

62 Pollinators, pests and soil properties interactively shape oilseed rape yield

Ignasi Bartomeus;Vesna Gagic;Riccardo Bommarco;

10.1101/010181 — — Posted on 2014-10-09

63 An evidence assessment tool for ecosystem services and conservation studies

Anne-Christine Mupepele;Jessica C. Walsh;William J. Sutherland;Carsten F. Dormann;

10.1101/010140 — Scientific Communication and Education — Posted on 2014-10-08

64 RNA-Seq analysis and annotation of a draft blueberry genome assembly identifies candidate genes involved in fruit ripening, biosynthesis of bioactive compounds, and stage-specific alternative splicing

Vikas Gupta;April Dawn Estrada;Ivory Clabaugh Blakley;Rob Reid;Ketan Patel;Mason D. Meyer;Stig Uggerhoj Andersen;Allan F. Brown;Mary Ann Lila;Ann Loraine;

10.1101/010116 — Genomics — Posted on 2014-10-08

65 Epithelial flow into the optic cup facilitated by suppression of BMP drives eye morphogenesis

Stephan Heermann;Lucas Schuetz;Steffen Lemke;Kerstin Krieglstein;Joachim Wittbrodt;

10.1101/010165 — Developmental Biology — Posted on 2014-10-08

66 Inference of interactions between chromatin modifiers and histone modifications: from ChIP-Seq data to chromatin-signaling

Juliane Perner;Julia Lasserre;Sarah Kinkley;Martin Vingron;Ho-Ryun Chung;

10.1101/010132 — Bioinformatics — Posted on 2014-10-08

67 State-dependent information processing in gene regulatory networks

Marçal Gabalda-Sagarra;Lucas Carey;Jordi Garcia-Ojalvo;

10.1101/010124 — Synthetic Biology — Posted on 2014-10-08

68 Bacterial diversity along a 2 600 km river continuum

Domenico Savio;Lucas Sinclair;Umer Z. Ijaz;Philipp Stadler;Alfred P. Blaschke;Georg H. Reischer;Guenter Bloeschl;Robert L. Mach;Alexander K.T. Kirschner;Andreas H. Farnleitner;Alexander Eiler;

10.1101/010041 — — Posted on 2014-10-20

69 Bacterial diversity along a 2 600 km river continuum

Domenico Savio;Lucas Sinclair;Umer Z. Ijaz;Philipp Stadler;Alfred P. Blaschke;Georg H. Reischer;Guenter Bloeschl;Robert L. Mach;Alexander K.T. Kirschner;Andreas H. Farnleitner;Alexander Eiler;

10.1101/010041 — — Posted on 2014-10-07

70 Use of OWL within the Gene Ontology

Christopher J Mungall;Heiko Dietze;David Osumi-Sutherland;

10.1101/010090 — Bioinformatics — Posted on 2014-10-07

71 Viscous deformation of relaxing ventricle and pulsatile blood propelling (numerical model)

Yuri Kamnev;

10.1101/009522 — Physiology — Posted on 2014-10-28

72 Selective corticostriatal plasticity during acquisition of an auditory discrimination task

Qiaojie Xiong;Petr Znamenskiy;Anthony Zador;

10.1101/010066 — Neuroscience — Posted on 2014-10-08

73 Selective corticostriatal plasticity during acquisition of an auditory discrimination task

Qiaojie Xiong;Petr Znamenskiy;Anthony Zador;

10.1101/010066 — Neuroscience — Posted on 2014-10-06

74 Microbial community composition and diversity via 16S rRNA gene amplicons: evaluating the Illumina platform

Lucas Sinclair;Omneya Ahmed Osman;Stefan Bertilsson;Alexander Eiler;

10.1101/010058 — Molecular Biology — Posted on 2014-10-06

75 Skip and bin: pervasive alternative splicing triggers degradation by nuclear RNA surveillance in fission yeast

Danny A Bitton;Sophie R Atkinson;Charalampos Rallis;Graeme C Smith;David A Ellis;Daniel C Jeffares;Yuan Chen;Michal Malecki;Sandra Codlin;Michal Lubas;Jean-Francois Lemay;Francois Bachand;Cristina Cotobal;Samuel Marguerat;Juan Mata;Torben Heick Jensen;Jurg Bahler;

10.1101/010033 — Genomics — Posted on 2014-10-06

76 Scaling properties of evolutionary paths in a biophysical model of protein adaptation

Michael Manhart;Alexandre V. Morozov;

10.1101/010082 — Evolutionary Biology — Posted on 2014-10-06

77 largeQvalue: A program for calculating FDR estimates with large datasets

Andrew Anand Brown;

10.1101/010074 — Bioinformatics — Posted on 2014-10-06

78 Ongoing worldwide homogenization of human pathogens

Timothée Poisot;Charles Nunn;Serge Morand;

10.1101/009977 — Ecology — Posted on 2014-10-03

79 A continuum of specialists and generalists in empirical communities

Timothée Poisot;Sonia Kéfi;Serge Morand;Michal Stanko;Pablo Marquet;Michael Hochberg;

10.1101/009985 — Ecology — Posted on 2014-10-03

80 Leveraging ancestry to improve causal variant identification in exome sequencing for monogenic disorders

Robert P Brown;Hane Lee;Ascia Eskin;Gleb Kichaev;Kirk E Lohmueller;Bruno Reversade;Stanley F Nelson;Bogdan Pasaniuc;

10.1101/010017 — Genetics — Posted on 2014-10-04

81 Fixed versus mixed RSA: Explaining visual representations by fixed and mixed feature sets from shallow and deep computational models

Seyed-Mahdi Khaligh-Razavi;Linda Henriksson;Kendrick Kay;Nikolaus Kriegeskorte;

10.1101/009936 — Neuroscience — Posted on 2014-10-03

82 Deep Sequencing revealed "Plant Like Transcripts" in mosquito Anopheles culicifacies: an Evolutionary Puzzle

Punita Sharma;Swati Sharma;Ashwani Mishra;Tina Thomas;Tanwee Das De;Sonia Verma;Vandana Kumari;Suman Lata;Namita Singh;Kailash Pandey;Rajnikant Dixit;

10.1101/010009 — Genomics — Posted on 2014-10-03

83 Phinch: An interactive, exploratory data visualization framework for –Omic datasets

Holly M Bik;Pitch Interactive;

10.1101/009944 — Genomics — Posted on 2014-10-03

84 Fitting the Balding-Nichols model to forensic databases

Rori Rohlfs;Vitor R.C. Aguiar;Kirk E. Lohmueller;Amanda M. Castro;Alessandro C.S. Ferreira;Vanessa C.O. Almeida;Iuri D. Louro;Rasmus Nielsen;

10.1101/009969 — Genetics — Posted on 2014-10-03

85 Inference of evolutionary forces acting on human biological pathways

Josephine T Daub;Isabelle Dupanloup;Marc Robinson-Rechavi;Laurent Excoffier;

10.1101/009928 — Evolutionary Biology — Posted on 2014-10-03

86 DevoWorm: differentiation waves and computation in C. elegans embryogenesis

Bradly Alicea;Steve McGrew;Richard Gordon;Stephen Larson;Tim Warrington;Mark Watts;

10.1101/009993 — Developmental Biology — Posted on 2014-10-03

87 HiFive: a tool suite for easy and efficient HiC and 5C data analysis

Michael EG Sauria;Jennifer E Phillips-Cremins;Victor G Corces;James Taylor;

10.1101/009951 — Bioinformatics — Posted on 2014-10-03

88 Crowdsourcing RNA structural alignments with an online computer game

Jérôme Waldispühl;Arthur Kam;Paul Gardner;

10.1101/009902 — Bioinformatics — Posted on 2014-10-03

89 The Drosophila Genome Nexus: a population genomic resource of 605 Drosophila melanogaster genomes, including 197 genomes from a single ancestral range population

Justin Lack;Charis Cardeno;Marc Crepeau;William Taylor;Russ Corbett-Detig;Kristian Stevens;Charles H. Langley;John Pool;

10.1101/009886 — Genomics — Posted on 2014-10-02

90 Reticulate speciation and adaptive introgression in the Anopheles gambiae species complex

Jacob Crawford;Michelle M. Riehle;Wamdaogo M. Guelbeogo;Awa Gneme;N'fale Sagnon;Kenneth D. Vernick;Rasmus Nielsen;Brian P. Lazzaro;

10.1101/009837 — Evolutionary Biology — Posted on 2014-10-01

91 Diversifying mechanisms in the on-farm evolution of crop mixtures

Mathieu Thomas;Stéphanie Thépot;Sophie Jouanne-Pin;Nathalie Galic;Carine Remoué;Isabelle Goldringer;

10.1101/009829 — Evolutionary Biology — Posted on 2014-10-02

92 Systematic identification of cancer driving signaling pathways based on mutual exclusivity of genomic alterations

Özgün Babur;Mithat Gönen;Bülent Arman Aksoy;Nikolaus Schultz;Giovanni Ciriello;Chris Sander;Emek Demir;

10.1101/009878 — Cancer Biology — Posted on 2014-10-02

93 Quantitative differences in developmental profiles of spontaneous activity in cortical and hippocampal cultures

Paul Charlesworth;Ellese Cotterill;Andrew Morton;Seth Grant;Stephen Eglen;

10.1101/009845 — Neuroscience — Posted on 2014-10-01

94 XWAS: a software toolset for genetic data analysis and association studies of the X chromosome

Feng Gao;Diana Chang;Arjun Biddanda;Li Ma;Yingjie Guo;Zilu Zhou;Alon Keinan;

10.1101/009795 — Genetics — Posted on 2014-10-30

95 Predicting Future Forest Ranges Using Array-based Geospatial Semantic Modelling

Elise Mulder Osenga;

10.1101/009597 — — Posted on 2014-10-06

96 Applying Geospatial Semantic Array Programming for a Reproducible Set of Bioclimatic Indices in Europe

Giovanni Caudullo;

10.1101/009589 — — Posted on 2014-10-27

97 Applying Geospatial Semantic Array Programming for a Reproducible Set of Bioclimatic Indices in Europe

Giovanni Caudullo;

10.1101/009589 — — Posted on 2014-10-16

98 Applying Geospatial Semantic Array Programming for a Reproducible Set of Bioclimatic Indices in Europe

Giovanni Caudullo;

10.1101/009589 — — Posted on 2014-10-06

99 Genome-Wide Mapping In A House Mouse Hybrid Zone Reveals Hybrid Sterility Loci And Dobzhansky-Muller Interactions

Leslie Turner;Bettina Harr;

10.1101/009373 — Evolutionary Biology — Posted on 2014-10-24

100 The projection of a test genome onto a reference population and applications to humans and archaic hominins

Melinda A Yang;Kelley Harris;Montgomery Slatkin;

10.1101/008805 — Genomics — Posted on 2014-10-08

101 A Genome-Wide Association Analysis Reveals Epistatic Cancellation of Additive Genetic Variance for Root Length in Arabidopsis thaliana

Jennifer Lachowiec;Xia Shen;Christine Queitsch;Örjan Carlborg;

10.1101/008789 — Genomics — Posted on 2014-10-08

102 A high resolution 7-Tesla resting-state fMRI test-retest dataset with cognitive and physiological measures

Krzysztof Jacek Gorgolewski;Natacha Mendes;Domenica Wilfling;Elisabeth Wladimirow;Claudine J. Gauthier;Tyler Bonnen;Florence J. M. Ruby;Robert Trampel;Pierre-Louis Bazin;Roberto Cozatl;Jonathan Smallwood;Daniel S. Margulies;

10.1101/008706 — Neuroscience — Posted on 2014-10-14

103 Modelling reactions catalysed by carbohydrate-active enzymes

Önder Kartal;Oliver Ebenhöh;

10.1101/008615 — Systems Biology — Posted on 2014-10-21

104 Long-read, whole genome shotgun sequence data for five model organisms

Kristi E Kim;Paul Peluso;Primo Baybayan;Patricia Jane Yeadon;Charles Yu;William Fisher;Chen-Shan Chin;Nicole A Rapicavoli;David R Rank;Joachim Li;David Catcheside;Susan E Celniker;Adam M Phillippy;Casey M Bergman;Jane M Landolin;

10.1101/008037 — Genomics — Posted on 2014-10-23

105 Bayesian mixture analysis for metagenomic community profiling.

Sofia Morfopoulou;Vincent Plagnol;

10.1101/007476 — Genomics — Posted on 2014-10-27

106 Rapid Core-Genome Alignment and Visualization for Thousands of Intraspecific Microbial Genomes

Todd J. Treangen;Brian D. Ondov;Sergey Koren;Adam M. Phillippy;

10.1101/007351 — Bioinformatics — Posted on 2014-10-20

107 Stable heteroplasmy at the single cell level is facilitated by inter-cellular exchange of mtDNA

Anitha D Jayaprakash;Erica Benson;Swapna Gone;Raymond Liang;Jaehee Shim;Luca Lambertini;Masoud M Toloue;Mike Wigler;Stuart Aaronson;Ravi Sachidanandam;

10.1101/007005 — Genetics — Posted on 2014-10-20

108 Bonsai: An event-based framework for processing and controlling data streams

Gonçalo Lopes;Niccolò Bonacchi;João Frazão;Joana P. Neto;Bassam V. Atallah;Sofia Soares;Luís Moreira;Sara Matias;Pavel M. Itskov;Patrícia A. Correia;Roberto E. Medina;Lorenza Calcaterra;Elena Dreosti;Joseph J. Paton;Adam R. Kampff;