bioRxiv directory

Ivo Buchhalter;Barbara Hutter;Tyler S Alioto;Timothy A Beck;Paul C Boutros;Benedikt Brors;Adam P Butler;Sasithorn Chotewutmontri;Robert E Denroche;Sophia Derdak;Nicolle Diessl;Lars Feuerbach;Akihiro Fujimoto;Susanne Gröbner;Marta Gut;Nicholas J Harding;Michael Heinold;Lawrence E Heisler;Jonathan Hinton;Natalie Jäger;David Jones;Rolf Kabbe;Andrey Korshunov;John D McPherson;Andrew Menzies;Hidewaki Nakagawa;Christopher Previti;Keiran Raine;Paolo Ribeca;Sabine Schmidt;Rebecca Shepherd;Lucy Stebbings;Patrick S Tarpey;Jon W Teague;Laurie Tonon;David A Wheeler;Liu Xi;Takafumi N Yamaguchi;Anne-Sophie

10.1101/013177 — Genomics — Posted on 2014-12-24

16 A Comprehensive Assessment of Somatic Mutation Calling in Cancer Genomes

Tyler S Alioto;Sophia Derdak;Timothy A Beck;Paul C Boutros;Lawrence Bower;Ivo Buchhalter;Matthew D Eldridge;Nicholas J Harding;Lawrence Edward Heisler;Eivind Hovig;David T W Jones;Andrew G Lynch;Sigve Nakken;Paolo Ribeca;Anne-Sophie Sertier;Jared T Simpson;Paul Spellman;Patrick Tarpey;Laurie Tonon;Daniel Vodák;Takafumi N Yamaguchi;Sergi Beltran Agullo;Marc Dabad;Robert E Denroche;Philip Ginsbach;Simon C Heath;Emanuele Raineri;Charlotte L Anderson;Benedikt Brors;Ruben Drews;Roland Eils;Akihiro Fujimoto;Francesc Castro Giner;Minghui He;Pablo Hennings-Yeomans;Barbara Hutter;Natalie Jäger;Rolf Kab

10.1101/012997 — Genomics — Posted on 2014-12-24

17 The Neural Marketplace: I. General Formalism and Linear Theory

Sarah N Lewis;Kenneth Daniel Harris;

10.1101/013185 — Neuroscience — Posted on 2014-12-23

18 Mapping bias overestimates reference allele frequencies at the HLA genes in the 1000 Genomes Project phase I data

Debora Yoshihara Caldeira Brandt;Vitor Rezende da Costa Aguiar;Bárbara Domingues Bitarello;Kelly Nunes;Jérôme Goudet;Diogo Meyer;

10.1101/013151 — Genomics — Posted on 2014-12-23

19 Public good diffusion limits microbial mutualism

Rajita Menon;Kirill S. Korolev;

10.1101/013144 — Biophysics — Posted on 2014-12-23

20 Quantifying cellular capacity to identify gene expression designs with reduced burden

Francesca Ceroni;Rhys J R Algar;Guy-Bart Stan;Tom Ellis;

10.1101/013110 — Synthetic Biology — Posted on 2014-12-22

21 Stimulus set meaningfulness and neurophysiological differentiation: a functional magnetic resonance imaging study

Melanie Boly;Shuntaro Sasai;Olivia Gosseries;Masafumi Oizumi;Adenauer Casali;Marcello Massimini;Giulio Tononi;

10.1101/013078 — Neuroscience — Posted on 2014-12-22

22 Pollen feeding proteomics: salivary proteins of the passion flower butterfly, Heliconius melpomene

Desiree Harpel;Darron A Cullen;Swidbert Ott;Chris D Jiggins;James R Walters;

10.1101/013128 — Molecular Biology — Posted on 2014-12-22

23 The evolutionarily stable distribution of fitness effects

Daniel P. Rice;Benjamin H. Good;Michael M. Desai;

10.1101/013052 — Evolutionary Biology — Posted on 2014-12-22

24 Real-world Interaction Networks Buffer Impact of Small Evolutionary Shifts On Biodiversity

Gabriel E Leventhal;Liyu Wang;Roger D Kouyos;

10.1101/013086 — — Posted on 2014-12-22

25 Genetic Analysis of Substrain Divergence in NOD Mice

Petr Simecek;Gary A Churchill;Hyuna Yang;Lucy B Rowe;Lieselotte Herberg;David V Serreze;Edward H Leiter;

10.1101/013037 — Genetics — Posted on 2014-12-20

26 Highly-efficient Cas9-mediated transcriptional programming

Alejandro Chavez;Jonathan Scheiman;Suhani Vora;Benjamin W Pruitt;Marcelle Tuttle;Eswar Iyer;Samira Kiani;Christopher D Guzman;Daniel J. Wiegand;Dimtry Ter-Ovanesyan;Jonathan L Braff;Noah Davidsohn;Ron Weiss;John Aach;Collins J Collins;George M Church;

10.1101/012880 — Synthetic Biology — Posted on 2014-12-20

27 Phytophthora infestans RXLR-WY effector AVR3a associates with a Dynamin-Related Protein involved in endocytosis of a plant pattern recognition receptor

Angela Chaparro-Garcia;Simon Schwizer;Jan Sklenar;Kentaro Yoshida;Jorunn I. B. Bos;Sebastian Schornack;Alexandra M. E. Jones;Tolga O. Bozkurt;Sophien Kamoun;

10.1101/012963 — Plant Biology — Posted on 2014-12-19

28 Faciotopy—a face-feature map with face-like topology in the human occipital face area

Linda Henriksson;Marieke Mur;Nikolaus Kriegeskorte;

10.1101/012989 — Neuroscience — Posted on 2014-12-19

29 E. coli OxyS non-coding RNA does not trigger RNAi in C. elegans

Alper Akay;Peter Sarkies;Eric Alexander Miska;

10.1101/013029 — Molecular Biology — Posted on 2014-12-19

30 Using Bayesian multilevel whole-genome regression models for partial pooling of estimation sets in genomic prediction

Frank Technow;L. Radu Totir;

10.1101/012971 — Genetics — Posted on 2014-12-19

31 Imperfect drug penetration leads to spatial monotherapy and rapid evolution of multi-drug resistance

Stefany Moreno-Gamez;Alison L Hill;Daniel I.S. Rosenbloom;Dmitri A. Petrov;Martin A Nowak;Pleuni Pennings;

10.1101/013003 — Evolutionary Biology — Posted on 2014-12-19

32 ViennaNGS: A toolbox for building efficient next-generation sequencing analysis pipelines

Michael T. Wolfinger;Jörg Fallmann;Florian Eggenhofer;Fabian Amman;

10.1101/013011 — Bioinformatics — Posted on 2014-12-19

33 FORGE : A tool to discover cell specific enrichments of GWAS associated SNPs in regulatory regions.

Ian Dunham;Eugene Kulesha;Valentina Iotchkova;Sandro Morganella;Ewan Birney;

10.1101/013045 — Bioinformatics — Posted on 2014-12-20

34 Dynamic reorganization of brain functional networks during cognition

Michał Bola;Bernhard Sabel;

10.1101/012922 — Neuroscience — Posted on 2014-12-19

35 The pig X and Y chromosomes: structure, sequence and evolution

Benjamin M Skinner;Carole A Sargent;Carol Churcher;Toby Hunt;Javier Herrero;Jane Loveland;Matt Dunn;Sandra Louzada;Beiyuan Fu;William Chow;James Gilbert;Siobhan Austin-Guest;Kathryn Beal;Denise Carvalho-Silva;William Cheng;Daria Gordon;Darren Grafham;Matt Hardy;Jo Harley;Heidi Hauser;Philip Howden;Kerstin Howe;Kim Lachani;Peter JI Ellis;Daniel Kelly;Giselle Kerry;James Kerwin;Bee Ling Ng;Glen Threadgold;Thomas Wileman;Jonathan MD Wood;Fengtang Yang;Jen Harrow;Nabeel A Affara;Chris Tyler-Smith;

10.1101/012914 — Genomics — Posted on 2014-12-19

36 Expansion of the HSFY gene family in pig lineages

Benjamin M Skinner;Kim Lachani;Carole A Sargent;Fengtang Yang;Peter JI Ellis;Toby Hunt;Beiyuan Fu;Sandra Louzada;Carol Churcher;Chris Tyler-Smith;Nabeel A Affara;

10.1101/012906 — Genetics — Posted on 2014-12-19

37 BioWardrobe: an integrated platform for analysis of epigenomics and transcriptomics data

Andrey V. Kartashov;Artem Barski;

10.1101/012799 — Bioinformatics — Posted on 2014-12-22

38 BioWardrobe: an integrated platform for analysis of epigenomics and transcriptomics data

Andrey V. Kartashov;Artem Barski;

10.1101/012799 — Bioinformatics — Posted on 2014-12-18

39 Common binding by redundant group B Sox proteins is evolutionarily conserved in Drosophila

Sarah H Carl;Steven Russell;

10.1101/012872 — Genomics — Posted on 2014-12-17

40 A biophysical approach to predicting protein-DNA binding energetics

George Locke;Alexandre V Morozov;

10.1101/012864 — Biophysics — Posted on 2014-12-17

41 Estimation of erythrocyte surface area in mammals

Ion Udroiu;

10.1101/012815 — Physiology — Posted on 2014-12-16

42 Principles governing A-to-I RNA editing in the breast cancer transcriptome

Debora Fumagalli;David Gacquer;Françoise Rothé;Anne Lefort;Frederick Libert;David Brown;Naima Kheddoumi;Adam Shlien;Tomasz Konopka;Roberto Salgado;Denis Larsimont;Kornelia Polyak;Karen Willard-Gallo;Christine Desmedt;Martine Piccart;Marc Abramowicz;Peter J Campbell;Christos Sotiriou;Vincent Detours;

10.1101/012849 — Genomics — Posted on 2014-12-16

43 Indication of family-specific DNA methylation patterns in developing oysters

Claire E. Olson;Steven B. Roberts;

10.1101/012831 — Genetics — Posted on 2014-12-16

44 Fitness costs in spatially structured environments

Florence Debarre;

10.1101/012740 — Evolutionary Biology — Posted on 2014-12-16

45 Modeling and quantifying frequency-dependent fitness in microbial populations with cross-feeding interactions

Noah Ribeck;Richard E. Lenski;

10.1101/012807 — Evolutionary Biology — Posted on 2014-12-16

46 Selection against maternal microRNA target sites in maternal transcripts

Antonio Marco;

10.1101/012757 — Evolutionary Biology — Posted on 2014-12-16

47 Origin and cross-century dynamics of an avian hybrid zone

Andrea Morales-Rozo;Elkin A. Tenorio;Matthew D. Carling;Carlos Daniel Cadena;

10.1101/012856 — Evolutionary Biology — Posted on 2014-12-16

48 Shrinkage of dispersion parameters in the binomial family, with application to differential exon skipping

Sean Ruddy;Marla Johnson;Elizabeth Purdom;

10.1101/012823 — Bioinformatics — Posted on 2014-12-16

49 Biological Organization, Biological Information, and Knowledge

Maurício Vieira Kritz;

10.1101/012617 — Systems Biology — Posted on 2014-12-15

50 Tissue-specific cancer paradox and mutation rates

Valentina Agoni;

10.1101/012658 — Cancer Biology — Posted on 2014-12-15

51 More Signal, Less Noise: Single-primer Adenylation Method (SAM) for the Efficient Preparation of DNA for Transposon Sequencing (TnSeq)

Sam Willcocks;Richard Stabler;Brendan Wren;

10.1101/012732 — Genomics — Posted on 2014-12-13

52 Limits to adaptation along environmental gradients

Jitka Polechová;Nick Barton;

10.1101/012690 — Evolutionary Biology — Posted on 2014-12-13

53 The utility of visual estimation in the rapid assessment of grass abundance for studies of foraging

Hansraj Gautam;G.G. Potdar;T.N.C. Vidya;

10.1101/012716 — — Posted on 2014-12-13

54 Connecting people and ideas from around the world: global innovation platforms for next-generation ecology and beyond

Peter Søgaard Jørgensen;Frédéric Barraquand;Vincent Bonhomme;Timothy J Curran;Ellen Cieraad;Thomas Ezard;Laureano Gherardi;R. Andrew Hayes;Timothée Poisot;Roberto Salguero-Gómez;Lucía DeSoto;Brian Swartz;Jennifer M. Talbot;Brian Wee;Naupaka Zimmerman;

10.1101/012666 — — Posted on 2014-12-14

55 Integrative Analysis of Transcriptome Variation in Uterine Carcinosarcoma and Comparison to Sarcoma and Endometrial Carcinoma

Natalie Davidson;Kjong-Van Lehmann;André Kahles;Alexendar Perez;Gunnar Rätsch;

10.1101/012708 — Cancer Biology — Posted on 2014-12-13

56 Model checking to assess T-helper cell plasticity

Wassim Abou-Jaoudé;Pedro Monteiro;Aurélien Naldi;Maximilien Grandclaudon;Vassili Soumelis;Claudine Chaouiya;Denis Thieffry;

10.1101/012641 — Systems Biology — Posted on 2014-12-12

57 Testing for genetic associations in arbitrarily structured populations

Minsun Song;Wei Hao;John D. Storey;

10.1101/012682 — Genetics — Posted on 2014-12-12

58 Reconstruction of Gene Regulatory Networks based on Repairing Sparse Low-rank Matrices

Young Hwan Chang;Roel Dobbe;Palak Bhushan;Joe W. Gray;Claire J. Tomlin;

10.1101/012534 — Systems Biology — Posted on 2014-12-11

59 From peer-reviewed to peer-reproduced: a role for data standards, models and computational workflows in scholarly publishing

Alejandra Gonzalez-Beltran;Peter Li;Jun Zhao;Maria Susana Avila-Garcia;Marco Roos;Mark Thompson;Eelke van der Horst;Rajaram Kaliyaperumal;Ruibang Luo;Tin-Lap Lee;Tak-wah Lam;Scott C. Edmunds;Susanna-Assunta Sansone;Philippe Rocca-Serra;

10.1101/011973 — Scientific Communication and Education — Posted on 2014-12-08

60 Pre-synaptic inhibition of afferent feedback in the macaque spinal cord does not modulate with cycles of peripheral oscillations around 10 Hz

Ferran Galán;Stuart N Baker;

10.1101/012583 — Neuroscience — Posted on 2014-12-12

61 Mouse conventional dendritic cells can be universally classified based on the mutually exclusive expression of XCR1 and SIRPα

Stephanie Gurka;Evelyn Hartung;Martina Becker;Richard A. Kroczek;

10.1101/012567 — Immunology — Posted on 2014-12-12

62 Widespread polycistronic transcripts in mushroom-forming fungi revealed by single-molecule long-read mRNA sequencing

Sean Gordon;Elizabeth Tseng;Asaf Salamov;Jiwei Zhang;Xiandong Meng;Zhiying Zhao;Dongwan Don Kang;Jason Underwood;Igor V Grigoriev;Melania Figueroa;Jonathan S Schilling;Feng Chen;Zhong Wang;

10.1101/012542 — Genomics — Posted on 2014-12-11

63 An annotated consensus genetic map for Pinus taeda L. and extent of linkage disequilibrium in three genotype-phenotype discovery populations

Jared W. Westbrook;Vikram E. Chhatre;Le-Shin Wu;Srikar Chamala;Leandro Gomide Neves;Patricio Muñoz;Pedro J Martínez-García;David B. Neale;Matias Kirst;Keithanne Mockaitis;C. Dana Nelson;Gary F. Peter;John M. Davis;Craig S. Echt;

10.1101/012625 — Genomics — Posted on 2014-12-12

64 The Avian RNAseq Consortium: a community effort to annotate the chicken genome

Jacqueline Smith;David W Burt;

10.1101/012559 — Genomics — Posted on 2014-12-12

65 Genome-wide Ultrabithorax binding analysis reveals highly targeted genomic loci at developmental regulators and a potential connection to Polycomb-mediated regulation

Daria Shlyueva;Antonio C.A. Meireles-Filho;Michaela Pagani;Alexander Stark;

10.1101/012609 — Developmental Biology — Posted on 2014-12-12

66 Heterogeneous Network Edge Prediction: A Data Integration Approach to Prioritize Disease-Associated Genes

Daniel S Himmelstein;Sergio E Baranzini;

10.1101/011569 — Bioinformatics — Posted on 2014-12-11

67 HISAT: Hierarchical Indexing for Spliced Alignment of Transcripts

Daehwan Kim;Ben Langmead;Steven Salzberg;

10.1101/012591 — Bioinformatics — Posted on 2014-12-15

68 HISAT: Hierarchical Indexing for Spliced Alignment of Transcripts

Daehwan Kim;Ben Langmead;Steven Salzberg;

10.1101/012591 — Bioinformatics — Posted on 2014-12-12

69 Online Self-Report Data for Duchenne Muscular Dystrophy confirms natural history and can be used to assess for therapeutic benefits

Richard T Wang;Cheri A Silverstein Fadlon;J Wes Ulm;Ivana Jankovic;Ascia Eskin;Ake Lu;Vanessa Miller;Rita M Cantor;Ning Li;Robert Elashoff;Ann S Martin;Holly Peay;Stanley F Nelson;

10.1101/012344 — Physiology — Posted on 2014-12-08

70 Conserved units of co-expression in bacterial genomes: an evolutionary insight into gene regulation

Ivan Junier;Olivier Rivoire;

10.1101/012526 — Systems Biology — Posted on 2014-12-09

71 Incorporating pushing in exclusion process models of cell migration

Christian A Yates;Andrew Parker;Ruth E Baker;

10.1101/012492 — Systems Biology — Posted on 2014-12-09

72 The effect of nutrient availability on global forest carbon balance is uncertain

Enzai Du;

10.1101/012476 — Ecology — Posted on 2014-12-28

73 The effect of nutrient availability on global forest carbon balance is uncertain

Enzai Du;

10.1101/012476 — Ecology — Posted on 2014-12-09

74 Host-parasite coevolution in populations of constant and variable size

Yixian Song;Chaitanya Gokhale;Andrei Papkou;Hinrich Schulenburg;Arne Traulsen;

10.1101/012435 — Evolutionary Biology — Posted on 2014-12-09

75 Reproductive workers show queen-like gene expression in an intermediately eusocial insect, the buff-tailed bumble bee Bombus terrestris.

Mark C Harrison;Robert L Hammond;Eamonn B Mallon;

10.1101/012500 — Evolutionary Biology — Posted on 2014-12-10

76 Bridging psychology and genetics using large-scale spatial analysis of neuroimaging and neurogenetic data

Andrew S Fox;Luke J Chang;Krzysztof J Gorgolewski;Tal Yarkoni;

10.1101/012310 — Neuroscience — Posted on 2014-12-09

77 DensiTree 2: Seeing Trees Through the Forest

Remco Bouckaert;Joseph Heled;

10.1101/012401 — Bioinformatics — Posted on 2014-12-08

78 Evaluating intra- and inter-individual variation in the human placental transcriptome

David A Hughes;Martin Kircher;Zhisong He;Song Guo;Genevieve L Fairbrother;Carlos S Moreno;Philipp Khaitovich;Mark Stoneking;

10.1101/012468 — Genomics — Posted on 2014-12-08

79 An experimental test of the relationship between melanism and desiccation survival in insects

Subhash Rajpurohit;Lisa Marie Peterson;Andrew Orr;Anthony J. Marlon;Allen G Gibbs;

10.1101/012369 — Evolutionary Biology — Posted on 2014-12-09

80 An experimental test of the relationship between melanism and desiccation survival in insects

Subhash Rajpurohit;Lisa Marie Peterson;Andrew Orr;Anthony J. Marlon;Allen G Gibbs;

10.1101/012369 — Evolutionary Biology — Posted on 2014-12-08

81 Genetic relateness of Haemophilus parasuis among reference strains and Chinese epidemic isolates

min yue;Chen;

10.1101/012393 — Microbiology — Posted on 2014-12-08

82 The genomic signature of social interactions regulating honey bee caste development

Svjetlana Vojvodic;Brian R Johnson;Brock Harpur;Clement Kent;Amro Zayed;Kirk E Anderson;Timothy Linksvayer;

10.1101/012385 — Genomics — Posted on 2014-12-08

83 Structured dynamics of neural activity across developing neocortex

James B Ackman;Hongkui Zeng;Michael C Crair;

10.1101/012237 — Neuroscience — Posted on 2014-12-05

84 Gene expression associated with white syndromes in a reef building coral, Acropora hyacinthus.

Rachel M Wright;Galina V Aglyamova;Eli Meyer;Mikhail V Matz;

10.1101/012211 — Genomics — Posted on 2014-12-05

85 Synthesis of phylogeny and taxonomy into a comprehensive tree of life

Cody Hinchliff;Stephen A Smith;James F Allman;J Gordon Burleigh;Ruchi Chaudhary;Lyndon M Cognill;Keith A Crandall;Jiabin Deng;Bryan T Drew;Romina Gazis;Karl Gude;David S Hibbett;Laura A Katz;H Dail Laughinghouse IV;Emily Jane McTavish;Peter E. Midford;Christopher L Owen;Richard Ree;Jonathan A Rees;Doug E Soltis;Tiffani Williams;Karen Ann Cranston;

10.1101/012260 — Evolutionary Biology — Posted on 2014-12-15

86 Synthesis of phylogeny and taxonomy into a comprehensive tree of life

10.1101/012260 — Evolutionary Biology — Posted on 2014-12-08

87 Synthesis of phylogeny and taxonomy into a comprehensive tree of life

10.1101/012260 — Evolutionary Biology — Posted on 2014-12-05

88 Likelihood Estimation with Incomplete Array Variate Observations

Deniz Akdemir;

10.1101/012278 — Genetics — Posted on 2014-12-05

89 Networks that learn the precise timing of event sequences

Alan Veliz-Cuba;Harel Shouval;Kresimir Josic;Zachary Kilpatrick;

10.1101/012195 — Neuroscience — Posted on 2014-12-04

90 Revealing missing isoforms encoded in the human genome by integrating genomic, transcriptomic and proteomic data

Zhiqiang Hu;Hamish S. Scott;Guangrong Qin;Guangyong Zheng;Xixia Chu;Lu Xie;David L. Adelson;Bergithe E. Oftedal;Parvalthy Venugopal;Milena Barbic;Christopher N. Hahn;Bing Zhang;Xiaojing Wang;Nan Li;Chaochun Wei;

10.1101/012112 — Genomics — Posted on 2014-12-05

91 Revealing missing isoforms encoded in the human genome by integrating genomic, transcriptomic and proteomic data

10.1101/012112 — Genomics — Posted on 2014-12-04

92 When to use Quantile Normalization?

Stephanie C. Hicks;Rafael A. Irizarry;

10.1101/012203 — Genomics — Posted on 2014-12-04

93 Evolutionary dynamics of collective action in spatially structured populations

Jorge Peña;Georg Nöldeke;Laurent Lehmann;

10.1101/012229 — Evolutionary Biology — Posted on 2014-12-04

94 SpeedSeq: Ultra-fast personal genome analysis and interpretation

Colby Chiang;Ryan M Layer;Gregory G Faust;Michael R Lindberg;David B Rose;Erik P Garrison;Gabor T Marth;Aaron R Quinlan;Ira M Hall;

10.1101/012179 — Bioinformatics — Posted on 2014-12-05

95 SpeedSeq: Ultra-fast personal genome analysis and interpretation

Colby Chiang;Ryan M Layer;Gregory G Faust;Michael R Lindberg;David B Rose;Erik P Garrison;Gabor T Marth;Aaron R Quinlan;Ira M Hall;

10.1101/012179 — Bioinformatics — Posted on 2014-12-04

96 Searching and Indexing Genomic Databases via Kernelization

Travis Gagie;Simon J Puglisi;

10.1101/012161 — Bioinformatics — Posted on 2014-12-04

97 Global geographic patterns of sexual size dimorphism in birds: Support for a latitudinal trend?

Nicholas R Friedman;Vladimír Remeš;

10.1101/012138 — Evolutionary Biology — Posted on 2014-12-04

98 Stochasticity and negative feedback lead to pulsed dynamics and distinct gene activity patterns

Samuel Zambrano;Marco E. Bianchi;Alessandra Agresti;Nacho Molina;

10.1101/011734 — Systems Biology — Posted on 2014-12-03

99 Natural Variation in Preparation for Nutrient Depletion Reveals a Cost-Benefit Tradeoff

Jue Wang;Esha Atolia;Bo Hua;Yonatan Savir;Renan Escalante-Chong;Michael Springer;

10.1101/011148 — Systems Biology — Posted on 2014-12-03

100 The infant airway microbiome in health and disease impacts later asthma development

Shu Mei Teo;Danny Mok;Kym Pham;Merci Kusel;Michael Serralha;Niamh Troy;Barbara J Holt;Belinda J Hales;Michael L Walker;Elysia Hollams;Yury H Bochkov;Kristine Grindle;Sebastian L Johnston;James E Gern;Peter D Sly;Patrick G Holt;Kathryn E Holt;Michael Inouye;

10.1101/012070 — Genomics — Posted on 2014-12-02

101 Explicit modeling of ancestry improves polygenic risk scores and BLUP prediction

Chia-Yen Chen;Jiali Han;David J. Hunter;Peter Kraft;Alkes L. Price;

10.1101/012005 — Genetics — Posted on 2014-12-03

102 Detecting the anomaly zone in species trees and evidence for a misleading signal in higher-level skink phylogeny (Squamata: Scincidae).

Charles W Linkem;Vladimir N. Minin;Adam D Leache;

10.1101/012096 — Evolutionary Biology — Posted on 2014-12-03

103 A mechanistic model of the S-shaped population growth

Lev V. Kalmykov;

10.1101/012104 — — Posted on 2014-12-03

104 Activation of dorsal raphe serotonergic neurons promotes persistent waiting independently of reinforcing effects

Madalena Fonseca;Masayoshi Murakami;Zachary F. Mainen;

10.1101/012062 — Neuroscience — Posted on 2014-12-01

105 Alignment by numbers: sequence assembly using compressed numerical representations

Avraam Tapinos;Bede Constantinides;Douglas B Kell;David L Robertson;

10.1101/011940 — Bioinformatics — Posted on 2014-12-01

106 Flies Infected by Zombie Fungi in an Urban Fragment

B. C. Barbosa;T. T. Maciel;

10.1101/011742 — — Posted on 2014-12-23

107 ENVIRONMENTS and EOL: identification of Environment Ontology terms in text and the annotation of the Encyclopedia of Life

Evangelos Pafilis;Sune P Frankild;Julia Schnetzer;Lucia Fanini;Sarah Faulwetter;Christina Pavloudi;Aikaterini Vasileiadou;Patrick Leary;Jennifer Hammock;Katja Schulz;Cynthia S Parr;Christos Arvanitidis;Lars Juhl Jensen;

10.1101/011403 — Bioinformatics — Posted on 2014-12-23

108 Exact solutions of linear reaction-diffusion processes on a uniformly growing domain: Criteria for successful colonization

Matthew J Simpson;

10.1101/011122 — Biophysics — Posted on 2014-12-13

109 The role of TORC1 in muscle development in Drosophila.

Isabelle Hatfield;Innocence Harvey;Erika R. Yates;JeAnna R. Redd;Lawrence T. Reiter;Dave Bridges;

10.1101/010991 — Developmental Biology — Posted on 2014-12-23

110 The Histology of Nanomia bijuga (Hydrozoa: Siphonophora)

Samuel H Church;Stefan Siebert;Pathikrit Bhattacharyya;Casey W Dunn;

10.1101/010868 — Zoology — Posted on 2014-12-08

111 Recent evolution of the mutation rate and spectrum in Europeans

Kelley Harris;

10.1101/010314 — Genomics — Posted on 2014-12-24

112 Species delimitation and phylogeny estimation under the multispecies coalescent

Graham R Jones;

10.1101/010199 — Evolutionary Biology — Posted on 2014-12-11

113 Bacterial diversity along a 2 600 km river continuum

Domenico Savio;Lucas Sinclair;Umer Z. Ijaz;Philipp Stadler;Alfred P. Blaschke;Georg H. Reischer;Guenter Bloeschl;Robert L. Mach;Alexander K.T. Kirschner;Andreas H. Farnleitner;Alexander Eiler;