bioRxiv directory

Piras, F.; Piras, F.; Abe, Y.; Agarwal, S. M.; Anticevic, A.; Ameis, S.; Arnold, P.; Bargallo, N.; Batistuzzo, M.; Benedetti, F.; Beucke, J. C.; Boedhoe, P. S. W.; Bollettini, I.; Brem, S.; Calvo, A.; Cho, K. I. K.; Dallaspezia, S.; Dickie, E.; Adam, B.; Fan, S.; Fouche, J. P.; Gruner, P.; Gursel, D. A.; Hauser, T. U.; Hirano, Y.; Hoexter, M. Q.; Iorio, M.; James, A.; Reddy, J.; Kaufmann, C.; Koch, K.; Kochunov, P.; Kwon, J. S.; Lazaro, L.; Lochner, C.; Marsh, R.; Nakagawa, A.; Nakamae, T.; Narayanaswamy, J. C.; Sakai, Y.; Shimizu, E.; Simon, D.; Simpson, H. B.; Soreni, N.; Stampfli, P.; Stern

10.1101/855916 — neuroscience — Posted on 2019-11-30

16 The lysogenization of the non-O157 Escherichia coli strains by stx-converting bacteriophage phi24B is associated with the O antigen loss and reduced fitness

Golomidova, A. K.; Efimov, A. D.; Kulikov, E. E.; Kuznetsov, A. S.; Letarov, A. V.

10.1101/860106 — microbiology — Posted on 2019-11-30

17 Topological Dependent Abundance of Spontaneous DNA Damage in Single Human Cells

Zhu, Q.; Niu, Y.; Gundry, M.; Sheng, K.; Niu, M.; Zong, C.

10.1101/859686 — genomics — Posted on 2019-11-30

18 Changing environments reveal innovative genetic variation in children's cortisol responses

Raffington, L. A. S.; Malanchini, M.; Grotzinger, A. D.; Madole, J. W.; Engelhardt, L. E.; Sabhlok, A.; Youn, C.; Patterson, M.; Harden, K. P.; Tucker-Drob, E. M.

10.1101/856658 — genetics — Posted on 2019-11-30

19 S-nitrosylation affects TRAP1 structure and ATPase activity and modulates cell response to apoptotic stimuli

Faienza, F.; Lambrughi, M.; Rizza, S.; Pecorari, C.; Giglio, P.; Salamanca Viloria, J.; Allega, M. F.; Chiappetta, G.; Vinh, J.; Pacello, F.; Battistoni, A.; Rasola, A.; Papaleo, E.; Filomeni, G.

10.1101/859629 — biochemistry — Posted on 2019-11-30

20 Task rule and choice are reflected by layer-specific processing in rodent auditory cortical microcircuits

Zempeltzi, M. M.; Kisse, M.; Brunk, M. G. K.; Glemser, C.; Aksit, S.; Deane, K. E.; Maurya, S.; Schneider, L.; Ohl, F. W.; Deliano, M.; Happel, M. F. K.

10.1101/860064 — neuroscience — Posted on 2019-11-30

21 Mass-spectrometry based proteomics reveals mitochondrial supercomplexome plasticity

Gonzalez-Franquesa, A.; Stocks, B.; Chubanava, S.; Hattel, H. B.; Moreno-Justicia, R.; Treebak, J. T.; Zierath, J. R.; Deshmukh, A. S.

10.1101/860080 — molecular biology — Posted on 2019-11-30

22 Accurate modeling of replication rates in genome-wide association studies by accounting for winner's curse and study-specific heterogeneity

Zou, J.; Zhou, J.; Faller, S.; Brown, R.; Eskin, E.

10.1101/856898 — bioinformatics — Posted on 2019-11-30

23 Multi-Differentiation Potential Is Necessary For Optimal Tenogenesis Of Tendon Stem Cells

Rajpar, I.; Barrett, J. G.

10.1101/845974 — cell biology — Posted on 2019-11-30

24 Assessing Environmental RNAi in a Non-Model Organism

Mondal, M.; Peter, J.; Scarbrough, O.; Flynt, A. S.

10.1101/860338 — bioinformatics — Posted on 2019-11-30

25 Enhanced nitric oxide synthesis through nitrate supply improves drought tolerance of sugarcane plants

Pissolato, M. D.; Silveira, N. M.; Prataviera, P. J.; Machado, E. C.; Seabra, A. B.; Pelegrino, M. T.; Sodek, L.; Ribeiro, R. V.

10.1101/860544 — plant biology — Posted on 2019-11-30

26 17q21.31 sub-haplotypes underlying H1-associated risk for Parkinson's disease and progressive supranuclear palsy converge on altered glial regulation

Bowles, K. R.; Pugh, D. A.; Farrell, K.; Han, N.; TCW, J.; Liu, Y.; Liang, S. A.; Qian, L.; Bendl, J.; Fullard, J. F.; Renton, A. E.; Casella, A.; Iida, M. A.; Bandres-Ciga, S.; Gan-Or, Z.; Heutink, P.; Siitonen, A.; Bertelsen, S.; Karch, C.; Frucht, S.; Kopell, B. H.; Peter, I.; Park, Y. J.; Crane, P.; Kauwe, J. S.; Boehme, K. L.; Hoglinger, G. U.; PART working group, ; IPDGC, ; PSP genetics consortium, ; Charney, A. W.; Roussos, P.; Wang, J. C.; Poon, W. W.; Raj, T.; Crary, J. F.; Goate, A. M.

10.1101/860668 — neuroscience — Posted on 2019-11-30

27 Transferring structural knowledge across cognitive maps in humans and models

Mark, S.; Moran, R.; Parr, T.; Kennerley, S.; Behrens, T. E. J.

10.1101/860478 — neuroscience — Posted on 2019-11-30

28 Possible origin of the scrapie genome in small endogenous RNAs; studies on eight candidate species in 263K scrapie-infected hamster brain

Lathe, R.

10.1101/620732 — neuroscience — Posted on 2019-11-30

29 Taxonomical and functional diversity of Saprolegniales in Anzali lagoon, Iran

Masigol, H.; Khodaparast, S. A.; Mostowfizadeh-Ghalamfarsa, R.; Rojas-Jimenez, K.; Woodhouse, J. N.; Neubauer, D.; Grossart, H.-P.

10.1101/860429 — ecology — Posted on 2019-11-30

30 Machine learning on drug-specific data to predict small molecule teratogenicity

Challa, A. P.; Beam, A. L.; Shen, M.; Peryea, T.; Lavieri, R. R.; Lippmann, E. S.; Aronoff, D. M.

10.1101/860627 — bioinformatics — Posted on 2019-11-30

31 Motion denoising of multiband resting state functional connectivity MRI data: An improved volume censoring method

Williams, J. C.; Van Snellenberg, J. X.

10.1101/860635 — neuroscience — Posted on 2019-11-30

32 The potential for a released autosomal X-shredder becoming a driving-Y chromosome and invasively suppressing wild populations of malaria mosquitoes

Alcalay, Y.; Fuchs, S.; Galizi, R.; Bernardini, F.; Haghighat-Khah, R. E.; Rusch, D. B.; Adrion, J. R.; Hahn, M. W.; Tortosa, P.; Papathanos, P. A.

10.1101/860551 — genetics — Posted on 2019-11-30

33 Reprogrammed Pteropus Bat Stem Cells Present Distinct Immune Signature And Are Highly Permissive For Henipaviruses

Aurine, N.; Baquerre, C.; Gaudino, M.; Jean, C.; Dumont, C.; Gervier, S.; Kress, C.; Horvat, B.; Pain, B.

10.1101/846410 — cell biology — Posted on 2019-11-30

34 A Compact Quadrupole-Orbitrap Mass Spectrometer with FAIMS Interface Improves Proteome Coverage in Short LC Gradients

Bekker-Jensen, D. B.; Martinez, A. d. V.; Steigerwald, S.; Ruether, P.; Fort, K.; Arrey, T. N.; Harder, A.; Makarov, A.; Olsen, J. V.

10.1101/860643 — biochemistry — Posted on 2019-11-30

35 An Adaptive Cue Selection Model of Allocentric Spatial Reorientation

Negen, J.; Bird, L.-A.; Nardini, M.

10.1101/860031 — neuroscience — Posted on 2019-11-30

36 Cognitive modelling reveals distinct electrophysiological markers of decision confidence and error monitoring

Rausch, M.; Zehetleitner, M.; Steinhauser, M.; Maier, M. E.

10.1101/860379 — neuroscience — Posted on 2019-11-30

37 An ALS-associated mutation in human FUS reduces neurotransmission from C. elegans motor neurons to muscles

Markert, S. M.; Skoruppa, M. P.; Yu, B.; Mulcahy, B.; Zhen, M.; Gao, S.; Sendtner, M.; Stigloher, C.

10.1101/860536 — neuroscience — Posted on 2019-11-30

38 Skin Lesions Classification Using Deep Learning Based on Dilated Convolution

Ratul, M. A. R.; Mozaffari, M. H.; Lee, D. W.; Parimbelli, D. E.

10.1101/860700 — cancer biology — Posted on 2019-11-30

39 Genetic diversity and population structure of the endangered endemic species Paeonia decomposita from China and implications for its conservation

Wang, Q. S.

10.1101/860734 — plant biology — Posted on 2019-11-30

40 Antibody responses to immunization require sensory neurons

Tynan, A.; Tsaava, T.; Gunasekaran, M.; Snee, I.; Mak, T.; Olofsson, P.; Andersson, U.; Chavan, S. S.; Tracey, K. J.

10.1101/860395 — immunology — Posted on 2019-11-30

Han, Y.; Sichterman, B.; Carrillo, M.; Gazzola, V.; Keysers, C.

10.1101/857094 — animal behavior and cognition — Posted on 2019-11-30

42 Mini-batch optimization enables training of ODE models on large-scale datasets

Stapor, P.; Schmiester, L.; Wierling, C.; Lange, B.; Weindl, D.; Hasenauer, J.

10.1101/859884 — systems biology — Posted on 2019-11-30

43 pSpatiocyte: a high-performance simulator for intracellular reaction-diffusion systems

Arjunan, S. N. V.; Miyauchi, A.; Iwamoto, K.; Takahashi, K.

10.1101/860650 — systems biology — Posted on 2019-11-30

44 Experimental and stochastic models of melanoma T-cell therapy define impact of subclone fitness on selection of antigen loss variants

Glodde, N.; Kraut, A.; van den Boorn-Konijnenberg, D.; Vadder, S.; Kreten, F.; Schmid-Burgk, J. L.; Aymans, P.; Echelmeyer, K.; Rumpf, M.; Landsberg, J.; Bald, T.; Tüting, T.; Bovier, A.; Hölzel, M.

10.1101/860023 — systems biology — Posted on 2019-11-30

45 Functional magnetic resonance imaging of regional impaired cerebrovascular reactivity for migraineurs in the interictal state

Chan, S.-t.; Evans, K. C.; Song, T.-y.; Gupta, R.; Rosen, B. R.; Singhal, A.; Kwong, K. K.

10.1101/859843 — neuroscience — Posted on 2019-11-30

46 Intensive infection control responses and whole genome sequencing to interrupt and resolve widespread transmission of OXA-181 Escherichia coli in a hospital setting

Roberts, L. W.; Forde, B. M.; Henderson, A.; Playford, G.; Runnegar, N.; Henderson, B.; Watson, C.; Lindsay, M.; Bursle, E.; Douglas, J.; Paterson, D. L.; Schembri, M. A. A.; Harris, P. N. A.; Beatson, S. A.

10.1101/850628 — microbiology — Posted on 2019-11-30

47 Cryo-OrbiSIMS for 3D molecular imaging of a bacterial biofilm in its native state

Zhang, J.; Brown, J.; Scurr, D.; Bullen, A.; MacLellan-Gibson, K.; Williams, P.; Alexander, M. R.; Hardie, K. R.; Gilmore, I. S.; Rakowska, P.

10.1101/859967 — microbiology — Posted on 2019-11-30

48 Genomic investigation of the strawberry pathogen Phytophthora fragariae indicates pathogenicity is determined by transcriptional variation in three key races

Adams, T. M.; Armitage, A. D.; Sobczyk, M. K.; Bates, H. J.; Tabima, J. F.; Kronmiller, B. A.; Tyler, B. M.; Grunwald, N. J.; Dunwell, J. M.; Nellist, C. F.; Harrison, R. J.

10.1101/860619 — genomics — Posted on 2019-11-30

49 Genomic characterisation and context of the blaNDM-1 carbapenemase in Escherichia coli ST101.

Ashcroft, M. M.; Forde, B. M.; Phan, M.-D.; Peters, K. M.; Henderson, A. M.; Hancock, S. J.; Roberts, L. W.; Chan, K.-G.; Chong, T. M.; Yin, W.-F.; Paterson, D. L.; Walsh, T. R.; Schembri, M. A.; Beatson, S. A.

10.1101/860726 — genomics — Posted on 2019-11-30

50 The Topology of Mutated Driver Pathways

Dridi, R.; Alghassi, H.; Obeidat, M.; Tayur, S.

10.1101/860676 — bioinformatics — Posted on 2019-11-30

51 wg-blimp: an end-to-end analysis pipeline for whole genome bisulfite sequencing data

Wöste, M.; Leitao, E.; Laurentino, S.; Horsthemke, B.; Rahmann, S.; Schröder, C.

10.1101/859900 — bioinformatics — Posted on 2019-11-30

52 Pan-organ model integration of metabolic and regulatory processes in type 1 diabetes

Ben Guebila, M.; Thiele, I.

10.1101/859876 — systems biology — Posted on 2019-11-30

53 Slow and fast cortical dynamics distinguish motor planning and execution

Eriksson, D.; Heiland, M.; Schneider, A.; Diester, I.

10.1101/857300 — neuroscience — Posted on 2019-11-30

Chibani, C. M.; Hertel, R.; Hoppert, M.; Liesegang, H.; Wendling, C. C.

10.1101/859181 — microbiology — Posted on 2019-11-30

55 Multiversal SpaceTime (MSpaceTime) Not Neural Network as Source of Intelligence in Generalized Quantum Mechanics, Extended General Relativity, Darwin Dynamics for Artificial Super Intelligence Synthesis

Zhang, Y.

10.1101/858423 — neuroscience — Posted on 2019-11-30

56 Convergent gene loss in aquatic plants predicts new components of plant immunity and drought response

Baggs, E. L.; Thanki, A. S.; O'Grady, R.; Schudoma, C.; Haerty, W.; Krasileva, K. V.

10.1101/572560 — plant biology — Posted on 2019-11-30

57 Multigenerational exposure to elevated temperatures leads to a reduction in standard metabolic rate in the wild

Pilakouta, N.; Killen, S. S.; Kristjansson, B. K.; Skulason, S.; Lindström, J.; Metcalfe, N. B.; Parsons, K. J.

10.1101/749986 — physiology — Posted on 2019-11-30

58 A compact vocabulary of paratope-epitope interactions enables predictability of antibody-antigen binding

Akbar, R.; Robert, P. A.; Pavlovic, M.; Jeliazkov, J. R.; Snapkov, I.; Slabodkin, A.; Weber, C. R.; Scheffer, L.; Miho, E.; Haff, I. H.; Tryslew Haug, D. T.; Lund-Johansen, F.; Safonova, Y.; Sandve, G. K.; Greiff, V.

10.1101/759498 — immunology — Posted on 2019-11-30

59 COUP-TFI/Nr2f1 orchestrates intrinsic neuronal activity during cortical area patterning

Studer, M.; del Pino, I.; Tocco, C.; Magrinelli, E.; Marcantoni, A.; Ferraguto, C.; Tomagra, G.; Bertacchi, M.; Alfano, C.; Leinekugel, X.; Frick, A. A.

10.1101/728402 — neuroscience — Posted on 2019-11-30

60 Sleep, regional grey matter volumes, and psychological functioning in adolescents

Lapidaire, W.; Urrila, A. S.; Artiges, E.; Miranda, R.; Vulser, H.; Bezivin-Frere, P.; Lemaitre, H.; Penttilä, J.; Banaschewski, T.; Bokde, A. L. W.; Bromberg, U.; Büchel, C.; Conrod, P. J.; Desrivieres, S.; Frouin, V.; Gallinat, J.; Garavan, H.; Gowland, P.; Heinz, A.; Ittermann, B.; Papadopoulos-Orfanos, D.; Paus, T.; Smolka, M. N.; Schumann, G.; Paillere Martinot, M.-L.; Martinot, J.-L.; Imagen Consortium,

10.1101/645184 — neuroscience — Posted on 2019-11-30

61 The head direction circuit of two insect species

Pisokas, I.; Heinze, S.; Webb, B.

10.1101/854521 — neuroscience — Posted on 2019-11-30

62 A Bayesian approach to explore signal execution mechanisms in programmed cell death

Kochen, M. A.; Lopez, C. F.

10.1101/732396 — systems biology — Posted on 2019-11-30

63 Neuro-functional correlates of protective effects of wheel-running exercise against cocaine locomotor sensitization in mice: a fallypride microPET study

Becker, G.; Lespine, L.-F.; Bahri, M. A.; Serrano, M. E.; Lemaire, C.; Luxen, A.; Tirelli, E.; Plenevaux, A.

10.1101/855791 — neuroscience — Posted on 2019-11-30

64 A new analytical pipeline for the study of the onset of mammary gland oncogenesis based on mammary organoid transplantation and organ clearing

Lagoutte, E.; Villeneuve, C.; Fraisier, V.; Krndija, D.; Deugnier, M.-A.; Chavrier, P.; Rosse, C.

10.1101/860270 — cell biology — Posted on 2019-11-30

65 Improvement of cryo-EM maps by density modification

Terwilliger, T. C.; Ludtke, S. J.; Read, R. J.; Adams, P. D.; Afonine, P. V.

10.1101/845032 — biochemistry — Posted on 2019-11-30

66 The plant mobile domain proteins MAIN and MAIL1 interact with the phosphatase PP7L to regulate gene expression and silence transposable elements in Arabidopsis thaliana.

Nicolau, M.; Picault, N.; Descombin, J.; Jami-Alahmadi, Y.; Feng, S.; Bucher, E.; Jacobsen, S. E.; Deragon, J.-M.; Wohlschlegel, J.; Moissiard, G.

10.1101/710905 — plant biology — Posted on 2019-11-30

67 Clustering by phenotype and genome-wide association study in autism

Narita, A.; Nagai, M.; Mizuno, S.; Ogishima, S.; Tamiya, G.; Ueki, M.; Sakurai, R.; Makino, S.; Obara, T.; Ishikuro, M.; Yamanaka, C.; Matsubara, H.; Kuniyoshi, Y.; Murakami, K.; Kobayashi, T.; Kobayashi, M.; Usuzaki, T.; Ohseto, H.; Hozawa, A.; Kikuya, M.; Metoki, H.; Kure, S.; Kuriyama, S.

10.1101/614958 — neuroscience — Posted on 2019-11-30

68 Mathematical Model of Mechanical Virion-Cell Interaction During Early Engulfment in HIV

Kruse, E.; Abdalrahman, T.; Selhorst, P.; Franz, T.

10.1101/859355 — biophysics — Posted on 2019-11-30

69 Community-level signatures of ecological succession in natural bacterial communities

Pascual-Garcia, A.; Bell, T.

10.1101/636233 — microbiology — Posted on 2019-11-29

70 The PIWI protein Aubergine recruits eIF3 to activate translation in the germ plasm

Ramat, A.; Garcia-Silva, M.-R.; Jahan, C.; Nait-Saidi, R.; Dufourt, J.; Garret, C.; Chartier, A.; Cremaschi, J.; Patel, V.; Decourcelle, M.; Bastide, A.; Juge, F.; Simonelig, M.

10.1101/859561 — developmental biology — Posted on 2019-11-29

71 Escort-like somatic cells mediate early mouse fetal ovarian development but surface-derived Lgr5+ cells support primordial follicles

Niu, W.; Spradling, A. C.

10.1101/855346 — developmental biology — Posted on 2019-11-30

72 Astral microtubule crosslinking by Feo safeguards uniform nuclear distribution in the Drosophila syncytium

Deshpande, O.; de-Carvalho, J.; Vieira, D. M.; Telley, I. A.

10.1101/859975 — cell biology — Posted on 2019-11-29

73 Stepwise autophosphorylation regulates biased agonism of the insulin receptor

Yunn, N.-O.; Park, M.; Noh, J.; Ryu, S. H.

10.1101/859868 — cell biology — Posted on 2019-11-29

74 Structure and function of the bacterial protein toxin phenomycin

Hansen, B. K.; Larsen, C. K.; Nielsen, J. T.; Svenningsen, E. B.; Van, L. B.; Jacobsen, K. M.; Bjerring, M.; Flygaard, R. K.; Jenner, L. B.; Nejsum, L. N.; Brodersen, D. E.; Mulder, F. A. A.; Toerring, T.; Poulsen, T. B.

10.1101/847772 — cell biology — Posted on 2019-11-29

75 Interplay between TERT promoter mutations and methylation culminates in chromatin accessibility and TERT expression

Salgado, C.; Roelse, C.; Nell, R.; Gruis, N.; van Doorn, R.; van der Velden, P.

10.1101/859892 — cancer biology — Posted on 2019-11-29

76 Evaluation of deacetylase inhibition in metaplastic breast carcinoma using multiple derivations of preclinical models of a new patient-derived tumor

Chang, T.; Matossian, M. D.; Elliot, S.; Burks, H. E.; Sabol, R. A.; Ucar, A. D.; Wathieu, H.; Zabaleta, J.; Valle, L. D.; Gill, S.; Martin, E.; Riker, A. I.; Miele, L.; Bunnell, B. A.; Burow, M. E.; Collins-Burow, B. M.

10.1101/860205 — cancer biology — Posted on 2019-11-29

77 Comparative In-Vitro Physicochemical Evaluation and Dissolution Profiling of Glibenclamide 5mg tablet Marketed in Addis Ababa, Ethiopia

Olbemo, S. K.; Lambore, H. A.; Leficho, W. A.; Wega, S. S.; Belew, S. y.

10.1101/860163 — pharmacology and toxicology — Posted on 2019-11-29

78 Intermittent access cocaine self-administration produces psychomotor sensitization: effects of withdrawal, sex and cross-sensitization

Carr, C. C.; Ferrario, C.; Robinson, T. E.

10.1101/859520 — pharmacology and toxicology — Posted on 2019-11-29

79 Is vectorial transmission of Trypanosoma cruzi an efficient route to support high infection rates in sylvatic hosts?"

Santos Vega, M.; Cordovez, J. M.; Erazo, D.; Sanabria, C.; rendon, L. M.; Guhl, F.

10.1101/860189 — ecology — Posted on 2019-11-29

80 Species, causes, and outcomes of wildlife rehabilitation in New York State

Hanson, M.; Hollingshead, N.; Schuler, K.; Siemer, W. F.; Martin, P.; Bunting, E. M.

10.1101/860197 — ecology — Posted on 2019-11-29

81 Active monomer RTR-1 derived from the root of Rhodomyrtus tomentosa induces apoptosis in gastric carcinoma cells by inducing ER stress and inhibiting the STAT3 signalling pathway

Zhang, X.; Cheng, J.; He, P.; Zhu, J.; Chen, Z.; Miao, S.; Wang, G.; Jiang, J.; Wang, Y.

10.1101/860130 — cancer biology — Posted on 2019-11-29

82 The metronomic combination of paclitaxel with cholinergic agonists inhibits triple negative breast tumor progression. Participation of M2 receptor subtype

Espanol, A.; Salem, A.; Di Bari, M.; Cristofaro, I.; Sanchez, Y.; Tata, A.; Sales, M. E.

10.1101/858969 — pharmacology and toxicology — Posted on 2019-11-29

83 Predicting cancer origins with a DNA methylation-based deep neural network model

Zheng, C.; Xu, R.

10.1101/860171 — cancer biology — Posted on 2019-11-29

84 Lateral mechanical impedance rather than frontal, promotes cortical expansion of roots

Feng, X.; Xiong, J.; Hu, Y.; Pan, L.; Liao, Z.; Zhang, X.; Guo, W.; Wu, F.; Xu, J.; Hu, E.; Lan, H.; Lu, Y.

10.1101/860155 — plant biology — Posted on 2019-11-29

85 The interaction between p53 and Mdm2 is independent of MEG3-p53 association

Bauer, N. C.; Yang, A.; Wang, X.; Zhou, Y.; Klibanski, A.; Soberman, R. J.

10.1101/857912 — cell biology — Posted on 2019-11-29

86 CDK4 as a phytochemical based anticancer drug target

Chando, R. K.; Hussain, N.; Islam Rana, M.; Sayed, S.; Alam, S.; Ahmed Fakir, T.; Sharma, S.; Rahman Tanu, A.; Mobin, F.; Hoque Apu, E.; Hasan, M. K.; Sayed, M. A.; Ashraf, M. A.

10.1101/859595 — cancer biology — Posted on 2019-11-29

87 Charting the metabolic landscape of the facultative methylotroph Bacillus methanolicus

Delepine, B.; Gil Lopez, M.; Carnicer, M.; Vicente, C. M.; Wendisch, V. F.; Heux, S.

10.1101/858514 — systems biology — Posted on 2019-11-29

88 Characterization of transcription activation domain of EcaICE1 and its interaction with EcaSIZ1 in Eucalyptus camaldulensis

Zhang, Z.; Cheng, L.; Zhang, W.; Hu, J.; Liu, Y.; Lin, Y.

10.1101/859819 — plant biology — Posted on 2019-11-29

89 Quantitative Analysis of Effects of a Single 60Co Gamma Ray Point Exposure on Time-Dependent Change in Locomotor Activity in Rats

Otani, K.; Ohtaki, M.; Fujimoto, N.; Saimova, A.; Kairkhanova, Y.; Uzbekov, D.; Chaizhunusova, N.; Aukenov, N.; Rakhypbekov, T.; Sato, H.; Kawano, N.; Hoshi, M.

10.1101/858985 — pharmacology and toxicology — Posted on 2019-11-29

90 SUSD4 Controls Activity-Dependent Degradation of AMPA Receptor GLUA2 and Synaptic Plasticity

Gonzalez-Calvo, I.; Iyer, K.; Carquin, M.; Khayachi, A.; Giuliani, F. A.; Vincent, J.; Seveno, M.; Sigoillot, S. M.; Veleanu, M.; Tahraoui, S.; Albert, M.; Vigy, O.; Nadjar, Y.; Dumoulin, A.; Triller, A.; Bessereau, J.-L.; Rondi-Reig, L.; Isope, P.; Selimi, F.

10.1101/859587 — neuroscience — Posted on 2019-11-29

91 mTOR-RhoA signalling impairments in direct striatal projection neurons induce altered behaviours and striatal physiology in mice

Rial, D.; Puighermanal, E.; Valjent, E.; Schiffmann, S. N.; de Kerchove d'Exaerde, A.

10.1101/858712 — neuroscience — Posted on 2019-11-29

92 Identification of Genomic Insertion and Flanking Sequences of the Transgenic Drought-tolerant Maize Line "SbSNAC1-382" using the Single Molecular Real-Time (SMRT) Sequencing Method

Tingru, Z.; Zhang, D.; Li, Y.; Li, C.; Liu, X.; Shi, Y.; Song, Y.; Li, Y.; Wang, T.

10.1101/858951 — molecular biology — Posted on 2019-11-29

93 Is vectorial transmission of Trypanosoma cruzi an efficient route to support high infection rates in sylvatic hosts?"

Santos Vega, M.; Cordovez, J. M.; Erazo, D.; Sanabria, C.; rendon, L. M.; Guhl, F.

10.1101/860189 — ecology — Posted on 2019-11-29

94 An epigenetic LTR-retrotransposon insertion in the upstream region of BnSHP1.A9 controls quantitative pod shattering resistance in Brassica napus

Liu, J.; Zhou, R.; Wang, W.; Wang, H.; Raman, R.; Qiu, Y.; Mei, D.; Raman, H.; Hu, Q.

10.1101/858407 — genetics — Posted on 2019-11-29

95 Checkpoint defects require WRNIP1 to counteract R-loop-associated genomic instability

Franchitto, A.; Marabitti, V.; Lillo, G.; Malacaria, E.; Palermo, V.; Pichierri, P.

10.1101/858761 — cancer biology — Posted on 2019-11-29

96 Volumetric Segmentation and Characterisation of the Paracingulate Sulcus on MRI Scans

Yang, J.; Wang, D.; Rollins, C.; Leming, M.; Lio, P.; Suckling, J.

10.1101/859496 — bioinformatics — Posted on 2019-11-29

97 TORC1 regulates the transcriptional response to glucose and developmental cycle via the Tap42-Sit4-Rrd1/2 pathway in Saccharomyces cerevisiae

Arumugam, P.; Alfatah, M.; Wong, J. H.; Krishnan, V. G.; Lee, Y. C.; Sin, Q. F.; Goh, C. J. H.; Kong, K. W.; Hoon, S.

10.1101/859793 — genetics — Posted on 2019-11-29

98 CsHscB as a novel TLR2 agonist from carcinogenic liver fluke Clonorchis sinensis modulates host immune response

Yan, C.; Fang, F.; Zhang, Y.-Z.; Wu, J.; Dong, X.; Liu, H.-L.; Fan, C.-Y.; Yu, Q.; Wang, L.; Li, X.-Y.; Wang, Y.; Chen, J.-X.; Tang, R.-X.; Zheng, K.-Y.

10.1101/858670 — immunology — Posted on 2019-11-29

99 Kidney Function and Blood Pressure: A Bi-directional Mendelian Randomisation Study

Yu, Z.; Coresh, J.; Qi, G.; Grams, M.; Boerwinkle, E.; Snieder, H.; Teumer, A.; Pattaro, C.; Kottgen, A.; Chatterjee, N.; Tin, A.

10.1101/856674 — genetics — Posted on 2019-11-29

100 Trans-biobank analysis with 676,000 individuals elucidates the association of polygenic risk scores of complex traits with human lifespan

Sakaue, S.; Kanai, M.; Karjalainen, J.; Akiyama, M.; Kurki, M.; Matoba, N.; Takahashi, A.; Hirata, M.; Kubo, M.; Matsuda, K.; Murakami, Y.; FinnGen, ; Daly, M.; Kamatani, Y.; Okada, Y.

10.1101/856351 — genetics — Posted on 2019-11-29

101 Multi-Model and Network Inference Based on Ensemble Estimates: Avoiding the Madness of Crowds

Stumpf, M. P. H.

10.1101/858308 — bioinformatics — Posted on 2019-11-29

102 Golgi anti-apoptotic proteins are evolutionarily conserved ion channels that regulate cell death in plants

Sierla, M.; Prole, D. L.; Saraiva, N.; Carrara, G.; Dinischiotu, N.; Vaattovaara, A.; Wrzaczek, M.; Taylor, C. W.; Smith, G. L.; Feys, B.

10.1101/859678 — plant biology — Posted on 2019-11-29

103 Estimating brain age from structural MRI and MEG data: Insights from dimensionality reduction techniques

Xifra-Porxas, A.; Ghosh, A.; Mitsis, G. D.; Boudrias, M.-H.

10.1101/859660 — neuroscience — Posted on 2019-11-29

104 Three complete genome sequences of Penguin megrivirus from ornithogenic soil, Adelie penguin and Weddell seal of Antarctica

Aasdev, A.; Mishra, A.; Nair, M.; Pawar, S. D.; Dubey, C. K.; Bhatia, S.; Dastidar, P. G.; Singh, V. P.; Raut, A. A.

10.1101/858043 — microbiology — Posted on 2019-11-29

105 Effect of Sequence Depth and Length in Long-read Assembly of the Maize Inbred NC358

Ou, S.; LIU, J.; Chougule, K. M.; Fungtammasan, A.; Seetharam, A.; Stein, J.; Llaca, V.; MANCHANDA, N.; Gilbert, A. M.; Wei, X.; Chin, C.-S.; Hufnagel, D. E.; Pedersen, S.; Snodgrass, S.; Fengler, K.; Woodhouse, M.; Walenz, B. P.; Koren, S.; Phillippy, A. M.; Hannigan, B. T.; Dawe, R. K.; Hirsch, C.; Hufford, M.; Ware, D.

10.1101/858365 — genomics — Posted on 2019-11-29

106 BitEpi: A Fast and Accurate Exhaustive Higher-Order Epistasis Search

Bayat, A.; Hosking, B.; Jain, Y.; Hosking, C.; Twine, N.; C. Bauer, D.

10.1101/858282 — bioinformatics — Posted on 2019-11-29

107 Information content of cheek and lip colour in relation to the timing of ovulation in women

Rigaill, L.

10.1101/859801 — physiology — Posted on 2019-11-29

108 Multiversal SpaceTime (MSpaceTime) Not Neural Network as Source of Intelligence in Generalized Quantum Mechanics, Extended General Relativity, Darwin Dynamics for Artificial Super Intelligence Synthesis

Zhang, Y.

10.1101/858423 — neuroscience — Posted on 2019-11-29

109 Postnatal functional inactivation of the ventral subiculum enhances dopaminergic responses in the core part of the nucleus accumbens following ketamine injection in adult rats

SAOUD, H.; DE BEUS, D.; EYBRARD, S.; LOUILOT, A.

10.1101/859322 — neuroscience — Posted on 2019-11-29

110 Microbial metabolically cohesive consortia and ecosystem functioning

Pascual-Garcia, A.; Bonhoeffer, S.; Bell, T.

10.1101/859421 — microbiology — Posted on 2019-11-29

111 Hardy-Weinberg Equilibrium in the Large Scale Genomic Sequencing Era

Abramovs, N.; Brass, A.; Tassabehji, M.

10.1101/859462 — bioinformatics — Posted on 2019-11-29

112 Conditioning a collective avoidance response in rummy-nose tetra

Lecheval, V.; Hemelrijk, C. K.; Theraulaz, G.

10.1101/858704 — animal behavior and cognition — Posted on 2019-11-29

113 Enhanced genome integrity maintenance and few large stress-mitigating changes in Arabidopsis halleri extreme-habitat local adaptation

Lee, G.; Quintana, J.; Ahmadi, H.; Syllwasschy, L.; Anderson, J. E.; Pietzenuk, B.; Kraemer, U.

10.1101/859249 — plant biology — Posted on 2019-11-29

114 The effect of single-task training on learning transfer to a novel bimanual task

Hadi, Z.; Shakeel, A.; Ahmad, H.; Anwar, M. N.; Navid, M. S.

10.1101/858217 — neuroscience — Posted on 2019-11-29

115 Parallel genomics uncover novel enterococcal-bacteriophage interactions

Chatterjee, A.; Willett, J.; Nguyen, U. T.; Monogue, B.; Palmer, K. L.; Dunny, G. M.; Duerkop, B. A.

10.1101/858506 — microbiology — Posted on 2019-11-29

116 Chronic infection of adult zebrafish with rough or smooth variant Mycobacterium abscessus causes necrotising inflammation and differential activation of host immunity

Hortle, E.; Kam, J. Y.; Krogman, E.; Warner, S. E.; Manuneedhi Cholan, P.; Kikuchi, K.; Triccas, J. A.; Britton, W. J.; Johansen, M. D.; Kremer, L.; Oehlers, S. H.

10.1101/856948 — microbiology — Posted on 2019-11-29

117 SEQUENCING CHEMICALLY INDUCED MUTATIONS IN THE MUTAMOUSE LACZ REPORTER GENE IDENTIFIES HUMAN CANCER MUTATIONAL SIGNATURES

Beal, M. A.; Meier, M. J.; LeBlanc, D.; Maurice, C.; O'Brien, J.; Yauk, C. L.; Marchetti, F.

10.1101/858159 — genetics — Posted on 2019-11-29

118 Convergent evolution of seasonal camouflage in response to reduced snow cover across the snowshoe hare range

Jones, M.; Mills, L. S.; Jensen, J. D.; Good, J. M.

10.1101/851766 — evolutionary biology — Posted on 2019-11-29

119 Primary mammary organoid model of lactation and involution

Sumbal, J.; Chiche, A.; Charifou, E.; Koledova, Z.; LI, H.

10.1101/859645 — cell biology — Posted on 2019-11-29

120 Gorlin syndrome-induced pluripotent stem cells form medulloblastoma with loss of heterozygosity in PTCH1

Ikemoto, Y.; Miyashita, T.; Nasu, M.; Hatsuse, H.; Kajiwara, K.; Fujii, K.; Motojima, T.; Toyoda, M.; UMEZAWA, A.

10.1101/858555 — cell biology — Posted on 2019-11-29

121 Construction of an inducible amyloid expression circuit in Bacillus megaterium: A case study with CsgA and TasA

Larsson, E. M.; McManus, J. B.; Murray, R. M.

10.1101/858266 — synthetic biology — Posted on 2019-11-29

122 Developmental plasticity of Brachypodium distachyon in response to P deficiency: modulation by inoculation with phosphate-solubilizing bacteria

Baudson, C.; Delory, B. M.; Spaepen, S.; du Jardin, P.; Delaplace, P.

10.1101/858233 — plant biology — Posted on 2019-11-29

123 Baseline dopamine predicts individual variation in methylphenidate's effects on cognitive motivation

Hofmans, L.; Papadopetraki, D.; van den Bosch, R.; Määttä, J. I.; Froböse, M. I.; Zandbelt, B. B.; Westbrook, A.; Verkes, R.-J.; Cools, R.

10.1101/859637 — neuroscience — Posted on 2019-11-29

124 Adaptive Expansion of Taste Neuron Response Profiles by Congruent Aroma in Drosophila

Shen, P.; Zhang, Y.; Zhang, Y.; Cai, H. N.

10.1101/859223 — neuroscience — Posted on 2019-11-29

125 Genetic Association Study of Childhood Aggression across raters, instruments and age

Ip, H. F.; van der Laan, C. M.; Brikell, I.; Sanchez-Mora, C.; Nolte, I. M.; St Pourcain, B.; Bolhuis, K.; Palviainen, T.; Zafarmand, H.; Colodro-Conde, L.; Gordon, S.; Zayats, T.; Aliev, F.; Jiang, C.; Wang, C. A.; Saunders, G.; Karhunen, V.; Hammerschlag, A. R.; Adkins, D. E.; Border, R.; Peterson, R. E.; Prinz, J. A.; Thiering, E.; Seppälä, I.; Vilor-Tejedor, N.; Ahluwalia, T. S.; Day, F. R.; Hottenga, J.-J.; Allegrini, A. G.; Krapohl, E. M. L.; Rimfeld, K.; Chen, Q.; Lu, Y.; Martin, J.; Soler Artigas, M.; Rovira, P.; Bosch, R.; Espanol, G.; Ramos Quiroga, J. A.; Neumann, A.; Ensink, J.;

10.1101/854927 — genomics — Posted on 2019-11-29

126 Top predator introduction changes the effects of spatial isolation on freshwater community structure

Pelinson, R. M.; Leibold, M. A.; Schiesari, L. C.

10.1101/857318 — ecology — Posted on 2019-11-29

127 Integrative genomic and epigenomic analyses identify a distinct role of c-Myc and L-Myc for lineage determination in small cell lung cancer

Patel, A. S.; Yoo, S.; Kong, R.; Sato, T.; Fridrikh, M.; Sinha, A.; Nudelman, G.; Powell, C. A.; Beasley, M. B.; Zhu, J.; Watanabe, H.

10.1101/852939 — cancer biology — Posted on 2019-11-29

128 Cancer Associated Fibroblasts Mediate Cancer Progression and Remodel the Tumouroid Stroma

Pape, J.; Magdeldin, T.; Stamati, K.; Nyga, A.; Loizidou, M.; Emberton, M.; Cheema, U.

10.1101/859041 — cancer biology — Posted on 2019-11-29

129 Cascading Epigenomic Model for GWAS

Ng, B.; Casazza, W.; Mostafavi, S.

10.1101/859512 — bioinformatics — Posted on 2019-11-29

130 Variant effect predictions capture some aspects of deep mutational scanning experiments

Reeb, J.; Wirth, T.; Rost, B.

10.1101/859603 — bioinformatics — Posted on 2019-11-29

131 Investigating olfactory behaviors in adult zebrafish

Kermen, F.; Darnet, L.; Wiest, C.; Palumbo, F.; Bechert, J.; Uslu, O.; Yaksi, E.

10.1101/859033 — animal behavior and cognition — Posted on 2019-11-29

132 Mechanistic models of signaling pathways deconvolute the functional landscape of glioblastoma at single cell resolution

Falco, M. M.; Pena-Chilet, M.; Loucera, C.; Hidalgo, M. R.; Dopazo, J.

10.1101/858811 — systems biology — Posted on 2019-11-29

Deng, L.; Stanley, M. L.; Monge, Z. A.; Wing, E. A.; Geib, B. R.; Davis, S. W.; Cabeza, R.

10.1101/858357 — neuroscience — Posted on 2019-11-29

134 Population level interactions between the neural correlates of dispositional internal thought and visual imagery

Karapanagiotidis, T.; Jefferies, E.; Smallwood, J.

10.1101/857490 — neuroscience — Posted on 2019-11-29

135 Oxytocin has sex-specific effects on social behaviour and hypothalamic oxytocin immunoreactive cells but not hippocampal neurogenesis in adult rats.

Duarte-Guterman, P.; Lieblich, S. E.; Qiu, W.; Splinter, J. E. J.; Go, K. A.; Casanueva-Reimon, L.; Galea, L. A. M.

10.1101/859165 — neuroscience — Posted on 2019-11-29

136 Spontaneous generation of face recognition in untrained deep neural networks

Baek, S.; Song, M.; Jang, J.; Kim, G.; Paik, S.-B.

10.1101/857466 — neuroscience — Posted on 2019-11-29

137 Metagenomic- and cultivation-based exploration of anaerobic chloroform biotransformation in hypersaline sediments as natural source of chloromethanes

Peng, P.; Lu, Y.; Bosma, T. N. P.; Nijenhuis, I.; Nijsse, B.; Shetty, S. A.; Ruecker, A.; Umanetc, A.; Ramiro-Garcia, J.; Kappler, A.; Sipkema, D.; Smidt, H.; Atashgahi, S.

10.1101/858480 — microbiology — Posted on 2019-11-29

138 Polymorphic inversions underlie the shared genetic susceptibility to prevalent common diseases

Gonzalez, J. R.

10.1101/859280 — genetics — Posted on 2019-11-29

139 Distinct life histories impact dikaryotic genome evolution in the rust fungus Puccinia striiformis causing stripe rust in wheat

Schwessinger, B.; Chen, Y.-J.; Tien, R.; Vogt, J. K.; Sperschneider, J.; Nagar, R.; McMullan, M.; Sicheritz-Ponten, T.; Sorensen, C.; Hovmoller, M. S.; Rathjen, J.; Fejer Justesen, A.

10.1101/859728 — evolutionary biology — Posted on 2019-11-29

140 Adaptation of plasticity to predicted climates in Australian rainbowfishes (Melanotaenia) across climatically defined bioregions

Sandoval-Castillo, J.; Gates, K.; Brauer, C.; Smith, S.; Bernatchez, L. B.; Beheregaray, L. B.

10.1101/859769 — ecology — Posted on 2019-11-29

141 Artificial upward trends in Greek marine landings: a case of presentist bias in European fisheries

Tsikliras, A. C.; Dimarchopoulou, D.; Pardalou, A.

10.1101/859694 — ecology — Posted on 2019-11-29

142 Impacts of intraspecific variability and local adaptation on the ecophysiology of mosses: an example with Sphagnum magellanicum

Oke, T. A.; Turetsky, M.; Weston, D. J.; Shaw, J.

10.1101/859710 — ecology — Posted on 2019-11-29

143 Identifying Novel Targets by using Drug-binding Site Signature: A Case Study of Kinase Inhibitors

Naveed, H.; Reglin, C.; Schubert, T.; Gao, X.; Arold, S. T.; Maitland, M. L.

10.1101/860510 — bioinformatics — Posted on 2019-11-29

144 The Collaborative Cross Graphical Genome

Su, H.; Chen, Z.; Rao, J.; Najarian, M.; Shorter, J. R.; Pardo-Manuel de Villena, F.; McMillan, L.

10.1101/858142 — bioinformatics — Posted on 2019-11-29

145 Adenita: Interactive 3D modeling and visualization of DNA nanostructures

de Llano, E.; Miao, H.; Ahmadi, Y.; Wilson, A. J.; Beeby, M.; Viola, I.; Barisic, I.

10.1101/849976 — bioinformatics — Posted on 2019-11-29

146 Trefoil factors share a lectin activity that defines their role in mucus

Jarva, M. A.; Lingford, J. P.; John, A.; Scott, N. E.; Goddard-Borger, E. D.

10.1101/859785 — biochemistry — Posted on 2019-11-29

147 Machine Learning Predicts New Anti-CRISPR Proteins

Eitzinger, S.; Asif, A.; Watters, K. E.; Iavarone, A. T.; Knott, G. J.; Doudna, J. A.; Minhas, F. u. A. A.

10.1101/854950 — biochemistry — Posted on 2019-11-29

148 Optogenetic control of Neisseria meningitidis Cas9 genome editing using an engineered, light-switchable anti-CRISPR protein

Hoffmann, M. D.; Mathony, J.; Upmeier zu Belzen, J.; Harteveld, Z.; Stengl, C.; Correia, B. E.; Eils, R.; Niopek, D.

10.1101/858589 — synthetic biology — Posted on 2019-11-29

149 Antifungal activity of Ocotea odorifera (Vell.) Rowher, Ocotea puberula (Rich.) Nees and Cinnamodendron dinisii Schwanke essential oils

Mezzomo, P.; Sausen, T. L.; Paroul, N.; Souza Roman, S.; Mielniczki-Pereira, A. A.; Cansian, R. L.

10.1101/859272 — plant biology — Posted on 2019-11-29

150 Specialization of phonological and semantic reading routes in early childhood

Mathur, A.; Schultz, D.; Wang, Y.

10.1101/858613 — neuroscience — Posted on 2019-11-29

151 Revisiting the Global Workspace: Orchestration of the functional hierarchical organisation of the human brain

Deco, G.; Vidaurre, D.; Kringelbach, M. L.

10.1101/859579 — neuroscience — Posted on 2019-11-29

152 Perceptual decisions are biased toward relevant prior choices

Feigin, H.; Baror, S.; Bar, M.; Zaidel, A.

10.1101/858324 — neuroscience — Posted on 2019-11-29

153 Multi-parametric quantitative spinal cord MRI with unified signal readout and image denoising

Grussu, F.; Battiston, M.; Veraart, J.; Schneider, T.; Cohen-Adad, J.; Shepherd, T. M.; Alexander, D. C.; Novikov, D. S.; Fieremans, E.; Gandini Wheeler-Kingshott, C. A. M.

10.1101/859538 — neuroscience — Posted on 2019-11-29

154 Feature matrix normalization, transformation and calculation of beta-diversity in metagenomics: Theoretical and applied perspectives on your decisions

Poulsen, C. S.; Aarestrup, F. M.; Brinch, C.; Ekstroem, C. T.

10.1101/859157 — microbiology — Posted on 2019-11-29

155 Selective metabolic redundancy of Gpi1 allows for specific inhibition of inflammatory Th17 cells

Wu, L.; Hollinshead, K. E. R.; Hao, Y.; Au, C.; Kroehling, L.; Ng, C.; Lin, W.-y.; Li, D.; Silva, H. M.; Shin, J.; Lafaille, J. J.; Possemato, R.; Pacold, M. E.; Papagiannakopoulos, T. Y.; Kimmelman, A. C.; Satija, R.; Littman, D. R.

10.1101/857961 — immunology — Posted on 2019-11-29

156 Genome-wide Association Study of Pediatric Obsessive-Compulsive Traits: Shared Genetic Risk between Traits and Disorder

Burton, C. L.; Lemire, M.; Xiao, B.; Corfield, E. C.; Erdman, L.; Bralten, J.; Poelmans, G.; Yu, D.; Shaheen, S.-M.; Goodale, T.; OCD Working Group of the Psychiatric Genomics Consortium, ; Soreni, N.; Hanna, G. L.; Fitzgerald, K. D.; Rosenberg, D.; Nestadt, G.; Paterson, A. D.; Strug, L.; Schachar, R. J.; Crosbie, J.; Arnold, P. D.

10.1101/858241 — genomics — Posted on 2019-11-29

157 Localizing components of shared transethnic genetic architecture of complex traits from GWAS summary data

Shi, H.; Burch, K. S.; Johnson, R.; Freund, M. K.; Kichaev, G.; Mancuso, N.; Manuel, A. M.; Dong, N.; Pasaniuc, B.

10.1101/858431 — genomics — Posted on 2019-11-29

158 Improved transcriptome annotation and read-through transcript identification with TIF-Seq2

Wang, J.; Li, B.; Marques, S.; Steinmetz, L. M.; Wei, W.; Pelechano, V.

10.1101/859488 — genomics — Posted on 2019-11-29

159 Eco-evolutionary control of pathogens

Lässig, M.; Mustonen, V.

10.1101/858621 — evolutionary biology — Posted on 2019-11-29

160 Quantifying colour difference in animals with variable patterning

Drackova, T.; Smolinsky, R.; Hiadlovska, Z.; Dolinay, M.; Martinkova, N.

10.1101/859074 — ecology — Posted on 2019-11-29

161 Plant traits are poor predictors of long-term ecosystem functioning

van der Plas, F.; Schroeder-Georgi, T.; Weigelt, A.; Barry, K. E.; Meyer, S.; Alzate, A.; Barnard, R.; Buchmann, N.; de Kroon, H.; Ebeling, A.; Eisenhauer, N.; Engels, C.; Fischer, M.; Gleixner, G.; Hildebrandt, A.; Koller-France, E.; Leimer, S.; Milcu, A.; Mommer, L.; Niklaus, P.; Oelmann, Y.; Roscher, C.; Scherber, C.; Scherer-Lorenzen, M.; Scheu, S.; Schmid, B.; Schulze, E.-D.; Temperton, V.; Tscharntke, T.; Voigt, W.; Weisser, W.; Wilcke, W.; Wirth, C.

10.1101/859314 — ecology — Posted on 2019-11-29

162 DeepSleep: Fast and Accurate Delineation of Sleep Arousals at Millisecond Resolution by Deep Learning

Li, H.; Guan, Y.

10.1101/859256 — bioinformatics — Posted on 2019-11-29

163 Phenotypically distinct human sequence is widespread in publicly archived microbial reads: an evaluation of methods for its detection

Bush, S. J.; Connor, T. R.; Peto, T. E. A.; Crook, D. W.; Walker, A. S.

10.1101/857508 — bioinformatics — Posted on 2019-11-29

164 Microscale Collagen and Fibroblast Interactions Enhance Primary Human Hepatocyte Functions in 3-Dimensional Models

Kukla, D.; Crampton, A.; Wood, D.; Khetani, S.

10.1101/857789 — bioengineering — Posted on 2019-11-29

165 Global analysis of adenylate-forming enzymes reveals β-lactone biosynthesis pathway in pathogenic Nocardia

Robinson, S. L.; Terlouw, B. R.; Smith, M. D.; Pidot, S. J.; Stinear, T. P.; Medema, M. H.; Wackett, L. P.

10.1101/856955 — biochemistry — Posted on 2019-11-29

166 PI-Plat: A high-resolution image-based 3D reconstruction method to estimate growth dynamics of rice inflorescence traits

Sandhu, J.; Zhu, F.; Paul, P.; Gao, T.; Dhatt, B. K.; Ge, Y.; Staswick, P.; Yu, H.; Walia, H.

10.1101/835306 — plant biology — Posted on 2019-11-29

167 Statistical approach for ...a test chemical is considered to be positive... in regulatory toxicology: Trend and pairwise tests

Hothorn, L. A.

10.1101/858571 — pharmacology and toxicology — Posted on 2019-11-29

168 Neural Arbitration between Social and Individual Learning Systems

Diaconescu, A. O.; Stecy, M.; Kasper, L.; Burke, C.; Nagy, Z.; Mathys, C.; Tobler, P.

10.1101/857862 — neuroscience — Posted on 2019-11-29

169 Morphine differentially alters the synaptic and intrinsic properties of D1R- and D2R-expressing medium spiny neurons in the nucleus accumbens

McDevitt, D. S.; Jonik, B.; Graziane, N. M.

10.1101/858100 — neuroscience — Posted on 2019-11-29

170 Differential propagation of ripples along the proximo-distal and septo-temporalaxes of dorsal CA1 of rats

Kumar, M.; Deshmukh, S. S.

10.1101/859082 — neuroscience — Posted on 2019-11-29

171 Diverse muscle spindle firing properties emerge from multiscale muscle mechanics

Blum, K. P.; Campbell, K. S.; Horslen, B. C.; Nardelli, P.; Housley, S. N.; Cope, T. C.; Ting, L. H.

10.1101/858209 — neuroscience — Posted on 2019-11-29

172 The RIF1-Long splice variant promotes G1 phase 53BP1 nuclear bodies to protect against replication stress

Watts, L. P.; Natsume, T.; Saito, Y.; Garzon, J.; Kanemaki, M. T.; Hiraga, S.-i.; Donaldson, A. D.

10.1101/859199 — molecular biology — Posted on 2019-11-29

173 Glycan-dependent two-step cell adhesion mechanism of Tc toxins

Roderer, D.; Broecker, F.; Sitsel, O.; Kaplonek, P.; Leidreiter, F.; Seeberger, P. H.; Raunser, S.

10.1101/857730 — molecular biology — Posted on 2019-11-29

174 Highly diverse Asgard archaea participate in organic matter degradation in coastal sediments

Cai, M.; Liu, Y.; Yin, X.; Zhou, Z.; Friedrich, M. W.; Richter-Heitmann, T.; Nimzyk, R.; Kulkarni, A.; Wang, X.; Li, W.; Pan, J.; Yang, Y.; Gu, J.-D.; Li, M.

10.1101/858530 — microbiology — Posted on 2019-11-29

175 Discovery of functional gene markers of bacteria for monitoring hydrocarbon pollution in the marine environment - a metatranscriptomics approach

Knapik, K.; Bagi, A.; Krolicka, A.; Baussant, T.

10.1101/857391 — microbiology — Posted on 2019-11-29

176 Protective microbe enhances colonisation of a novel host species by modifying immune gene expression

Ford, S. A.; King, K. C.

10.1101/857540 — microbiology — Posted on 2019-11-29

177 The fecal microbiota of piglets is influenced by the farming environment and is associated with piglet robustness at weaning

Luise, D.; Le Sciellour, M.; Buchet, A.; Resmond, R.; Clement, C.; Rossignol, M.-N.; Jardet, D.; Zemb, O.; Belloc, C.; MERLOT, E.

10.1101/859215 — microbiology — Posted on 2019-11-29

178 Coinfinder: Detecting Significant Associations and Dissociations in Pangenomes

Whelan, F. J.; Rusilowicz, M.; McInerney, J. O.

10.1101/859371 — microbiology — Posted on 2019-11-29

179 A simple device to immobilize protists for electrophysiology and microinjection

Kulkarni, A.; Escoubet, N.; Prevost, A. M.; Pontani, L.-L.; Brette, R.

10.1101/859413 — microbiology — Posted on 2019-11-29

180 Integration of absolute multi-omics reveals translational and metabolic interplay in mixed-kingdom microbiomes.

Delogu, F.; Kunath, B. J.; Arntzen, M. O.; Hvidsten, T. R.; Pope, P. B.

10.1101/857599 — microbiology — Posted on 2019-11-29

181 New, easy, quick and efficient DNA replication timing analysis by high-throughput approaches.

Hadjadj, D.; Denecker, T.; Guerin, E.; Kim, S.-J.; Fauchereau, F.; Baldacci, G.; Maric, C.; Cadoret, J.-C.

10.1101/858803 — genomics — Posted on 2019-11-29

182 Testing the effectiveness of principal components in adjusting for relatedness in genetic association studies

Yao, Y.; Ochoa, A.

10.1101/858399 — genetics — Posted on 2019-11-29

183 Mechanisms underlying higher order interactions: from quantitative definitions to ecological processes

Kleinhesselink, A. R.; Kraft, N. J. B.; Levine, J. M.

10.1101/857920 — ecology — Posted on 2019-11-29

184 Unravelling ant-symbiont network topology across Europe

Parmentier, T.; De Laender, F.; Bonte, D.

10.1101/859058 — ecology — Posted on 2019-11-29

185 Bacterial lipopolysaccharide induces settlement and metamorphosis in a marine larva

Freckelton, M. L.; Nedved, B. T.; Cai, Y.-S.; Cao, S.; Turano, H.; Alegado, R. A.; Hadfield, M. G.

10.1101/851519 — ecology — Posted on 2019-11-29

186 rgenesconverged : An R Package for the Exploration of Molecular Convergent Evolution

Issakova, D.

10.1101/858076 — bioinformatics — Posted on 2019-11-29

187 Comparative evaluation of Aspergillus niger strains for endogenous pectin depolymerization capacity and suitability for D-galacturonic acid production

Schaefer, D.; Schmitz, K.; Weuster-Botz, D.; Benz, J. P.

10.1101/858548 — bioengineering — Posted on 2019-11-29

188 Predictive engineering and optimization of tryptophan metabolism in yeast through a combination of mechanistic and machine learning models

Zhang, J.; Petersen, S. D.; Radivojevic, T.; Ramirez, A.; Perez, A.; Abeliuk, E.; Sanchez, B. J.; Costello, Z.; Chen, Y.; Fero, M.; Martin, H. G.; Nielsen, J. B.; Keasling, J. D.; Jensen, M. K.

10.1101/858464 — bioengineering — Posted on 2019-11-29

189 Integrity of the Uncinate Fasciculus Predicts Emotional Pattern Separation-Related fMRI Signals in the Hippocampal Dentate and CA3

Granger, S. J.; Leal, S. L.; Janecek, J.; McMillan, L.; Stern, H.; Yassa, M. A.

10.1101/858258 — neuroscience — Posted on 2019-11-29

190 Methylenetetrahydrofolate reductase deficiency alters cellular response after ischemic stroke in male mice

Abato, J. E.; Moftah, M.; Cron, G. O.; Smith, P. D.; Jadavji, N. M.

10.1101/857938 — neuroscience — Posted on 2019-11-29

191 The Structural Basis for Glycerol Permeation by human AQP7

zhang, l.; yao, d.; zhang, q.; zhou, f.; xia, y.; wang, q.; qin, a.; zhao, j.; li, d.; zhou, l.; cao, y.

10.1101/858332 — molecular biology — Posted on 2019-11-29

192 The impact of leadered and leaderless gene structures on translation efficiency, transcript stability, and predicted transcription rates in Mycobacterium smegmatis

Nguyen, T. G.; Vargas-Blanco, D. A.; Roberts, L. A.; Shell, S. S.

10.1101/857003 — microbiology — Posted on 2019-11-29

193 Modularized Transcriptional Regulatory Networks of Fusarium graminearum

Guo, L.; Ji, M.; Ye, K.

10.1101/858498 — microbiology — Posted on 2019-11-29

194 A common pattern of influenza A virus single cell gene expression heterogeneity governs the innate antiviral response to infection

Vera, J. C.; Sun, J.; Lin, Y. T.; Drnevich, J.; Ke, R.; Brooke, C. B.

10.1101/858373 — microbiology — Posted on 2019-11-29

195 Building a better biofilm - formation of in vivo-like biofilm structures by Pseudomonas aeruginosa in a porcine model of cystic fibrosis lung infection

Harrington, N. E.; Sweeney, E.; Harrison, F.

10.1101/858597 — microbiology — Posted on 2019-11-29

196 Ultra-low input single tube linked-read library method enables short-read NGS systems to generate highly accurate and economical long-range sequencing information for de novo genome assembly and haplotype phasing

Chen, Z.; Pham, L.; Wu, T.-C.; Mo, G.; Xia, Y.; Chang, P.; Porter, D.; Phan, T.; Che, H.; Tran, H.; Bansal, V.; Shaffer, J.; Belda-Ferre, P.; Humphrey, G.; Knight, R.; Pevzner, P.; Pham, S.; Wang, Y.; Lei, M.

10.1101/852947 — genomics — Posted on 2019-11-29

197 Differential efficacies of Cas nucleases on microsatellites involved in human disorders and associated off-target mutations

Poggi, L.; Emmenegger, L.; Descorps-Declere, S.; Dumas, B.; Richard, G.-F.

10.1101/857714 — genetics — Posted on 2019-11-29

198 Polygenic risk of psychiatric disorders exhibits cross-trait associations in electronic health record data

Kember, R. L.; Merikangas, A. K.; Verma, S. S.; Verma, A.; Judy, R.; Regeneron Genetics Center, ; Damrauer, S. M.; Ritchie, M. D.; Rader, D. J.; Bucan, M.

10.1101/858027 — genetics — Posted on 2019-11-29

199 Brain DNA Methylation Patterns in CLDN5 Associated With Cognitive Decline

Huels, A.; Robins, C.; Conneely, K.; Edgar, R. D.; De Jager, P.; Bennett, D. A.; Wingo, A.; Wingo, T. S.

10.1101/857953 — genetics — Posted on 2019-11-29

200 Theoretical properties of nearest-neighbor distance distributions and novel metrics for high dimensional bioinformatics data

Dawkins, B. A.; Le, T. T.; McKinney, B. A.

10.1101/857821 — bioinformatics — Posted on 2019-11-29

201 Another look at microbe-metabolite interactions: how scale invariant correlations can outperform a neural network

Quinn, T.; Erb, I.

10.1101/847475 — bioinformatics — Posted on 2019-11-29

202 CCLA: an accurate method and web server for cancer cell line authentication using gene expression profiles

Zhang, Q.; Luo, M.; Liu, C. J.; Guo, A.-Y.

10.1101/858456 — bioinformatics — Posted on 2019-11-29

203 Sterols as dietary markers for Drosophila melanogaster

Knittelfelder, O.; Prince, E.; Sales, S.; Fritzsche, E.; Woehner, T.; Brankatschk, M.; Shevchenko, A.

10.1101/857664 — biochemistry — Posted on 2019-11-29

204 PhenoMIP: High Throughput Phenotyping of Diverse C. elegans Populations via Molecular Inversion Probes

Mok, C.; Belmarez, G.; Edgley, M. L.; Moerman, D. G.; Waterston, R. H.

10.1101/857854 — genetics — Posted on 2019-11-29

205 Intercontinental genomic parallelism in multiple adaptive radiations

Magalhaes, I. S.; Whiting, J. R.; D'Agostino, D.; Hohenlohe, P. A.; Mahmud, M.; Bell, M. A.; Skulason, S.; MacColl, A. D. C.

10.1101/856344 — evolutionary biology — Posted on 2019-11-29

206 The Role of Scale in the Estimation of Cell-type Proportions

Hunt, G. J.; Gagnon-Bartsch, J. A.

10.1101/857805 — bioinformatics — Posted on 2019-11-29

207 Feature selection strategies for drug sensitivity prediction

Koras, K.; Juraeva, D.; Kreis, J.; Mazur, J.; Staub, E.; Szczurek, E.

10.1101/856013 — bioinformatics — Posted on 2019-11-29

208 Relationship between cardiac cycle and the timing of actions during action execution and observation

Palser, E. R.; Glass, J.; Fotopoulou, A.; Kilner, J. M.

10.1101/585414 — neuroscience — Posted on 2019-11-29

209 Further evidence of increased human Herpesvirus in Alzheimer's disease

Readhead, B.; Haure-Mirande, J.-V.; Ehrlich, M. E.; Gandy, S.; Dudley, J. T.

10.1101/858050 — neuroscience — Posted on 2019-11-29

210 The hematopoietic landscape at single-cell resolution reveals unexpected stem cell features in naked mole-rats

Emmrich, S.; Mariotti, M.; Takasugi, M.; Straight, M. E.; Trapp, A.; Gladyshev, V. N.; Seluanov, A.; Gorbunova, V.

10.1101/859454 — immunology — Posted on 2019-11-29

211 Minimized double guide RNA libraries enable scale-limited CRISPR/Cas9 screens

Peets, E. M.; Crepaldi, L.; Zhou, Y.; Allen, F.; Elmentaite, R.; Noell, G.; Turner, G.; Iyer, V.; Parts, L.

10.1101/859652 — genetics — Posted on 2019-11-29

212 Deletion of mouse Setd4 promotes the recovery of hematopoietic failure.

Feng, X.; Lu, H.; Yue, J.; Shettigar, M.; Liu, J.; Denzin, L. K.; Shen, Z.

10.1101/860239 — developmental biology — Posted on 2019-11-29

213 Realistic Anatomically Detailed Open-Source Spinal Cord Stimulation (RADO-SCS) Model

Khadka, N.; Liu, X.; Zander, H.; Swami, J.; Rogers, E.; Lempka, S. F.; Bikson, M.

10.1101/857946 — neuroscience — Posted on 2019-11-29

214 An upstream open reading frame represses translation of chicken PPARγ transcript variant 1

Chu, Y.; Huang, J.; Ma, G.; Cui, T.; Yan, X.; Li, H.; Wang, N.

10.1101/858753 — molecular biology — Posted on 2019-11-29

215 Structural basis of RNA Polymerase III transcription repression by Maf1

Vorländer, M. K.; Baudin, F.; Moir, R. D.; Wetzel, R.; Hagen, W. J. H.; Willis, I. M.; Müller, C. W.

10.1101/859132 — molecular biology — Posted on 2019-11-29

216 Fungal-bacterial interaction selects for quorum sensing mutants and a metabolic shift towards the production of natural antifungal compounds

Albarracin Orio, A. G.; Petras, D.; Tobares, R. A.; Aksenov, A.; Wang, M.; Juncosa, F.; Sayago, P.; Moyano, A.; Dorrestein, P. C.; Smania, A. M.; Ducasse, D.

10.1101/376590 — microbiology — Posted on 2019-11-29

217 The rate of de novo CNVs in healthy controls

Barone, J.; Bracher-Smith, M.; Kendall, K.; Owen, M. J.; O'Donovan, M. C.; Kirov, G. M.

10.1101/857797 — genomics — Posted on 2019-11-29

218 Phylogenetic inference identifies two eumetazoan TRPM clades and an 8th family of TRP channel, TRP soromelastatin (TRPS)

Himmel, N. J.; Gray, T. R.; Cox, D. N.

10.1101/860445 — evolutionary biology — Posted on 2019-11-29

219 Mapping Human Pluripotent Stem Cell Derived Erythroid Differentiation by Single-Cell Transcriptome Analysis

Xin, Z.; Zhang, W.; Gong, S.; Zhu, J.; Li, Y.; Zhang, Z.; Fang, X.

10.1101/859777 — developmental biology — Posted on 2019-11-29

220 Paracrine and autocrine R-spondin signalling is essential for the maintenance and differentiation of renal stem cells

Vidal, V. P. I.; Gregoire, E.; Szenker, E.; Leushacke, M.; Reversade, B.; Chaboissier, M.-C.; Schedl, A.

10.1101/859959 — developmental biology — Posted on 2019-11-29

221 Single cell analysis of the effects of developmental lead (Pb) exposure on the hippocampus.

Colacino, J. A.; Dou, J.; Thompson, R.; Lee, C. T.-Y.; Middleton, L. Y.; Bambarendage, P. P. U.; Ferris, S. P.; Jones, T. R.; Neier, K.; Zhou, X.; Sartor, M.; Hammoud, S. S.; Dolinoy, D. C.; Bakulski, K. M.

10.1101/860403 — pharmacology and toxicology — Posted on 2019-11-29

222 Transforming growth factor-beta signaling via ALK1 and ALK5 regulates distinct functional pathways in vein graft intimal hyperplasia

Bradshaw, A.; Low, E.; Schwartze, J. T.; Kurkiewicz, A.; Pek, M.; Kelly, D.; Shaw, A.; Thorikay, M.; McClure, J.; McBride, M.; Arias-Rivas, S.; Francis, S. E.; Morrell, N.; Delles, C.; Herzyk, P.; Havenga, M. J.; Nicklin, S. A.; ten Dijke, P.; Baker, A. H.

10.1101/860320 — cell biology — Posted on 2019-11-29

223 Proteinarium: Multi-Sample Protein-Protein Interaction Analysis and Visualization Tool

Armanious, D.; Schuster, J.; Tollefson, G. F.; Agudelo, A.; DeWan, A. T.; Istrail, S.; Padbury, J.; Uzun, A.

10.1101/589085 — bioinformatics — Posted on 2019-11-29

224 Zbtb24 binding protects promoter activity by antagonizing DNA methylation in mESCs

Wu, H.; San Leon Granado, D.; Vukic, M.; Vonk, K. K. D.; Breukel, C.; Chouaref, J.; Laros, J. F. J.; Daxinger, L.

10.1101/858662 — molecular biology — Posted on 2019-11-29

225 Mechanical plasticity of the ECM directs invasive branching morphogenesis in human mammary gland organoids

Buchmann, B.; Meixner, L. K.; Fernandez, P.; Hutterer, F. P.; Raich, M. K.; Scheel, C. H.; Bausch, A.

10.1101/860015 — developmental biology — Posted on 2019-11-29

226 On the prediction of DNA-binding preferences of C2H2-ZF domains using structural models: application on human CTCF.

Meseguer, A.; Arman, F.; Fornes, O.; Molina-Fernandez, R.; Bonet, J.; Fernandez-Fuentes, N.; Oliva, B.

10.1101/859934 — bioinformatics — Posted on 2019-11-29

227 Alignment of time-course single-cell RNA-seq data with CAPITAL

Sugihara, R.; Kato, Y.; Mori, T.; Kawahara, Y.

10.1101/859751 — bioinformatics — Posted on 2019-11-29

228 SAFB2 enables the processing of suboptimal stem-loop structures in clustered primary miRNA transcripts

Hutter, K.; Lohmueller, M.; Jukic, A.; Eichin, F.; Avci, S.; Labi, V.; Hoser, S. M.; Huettenhofer, A.; Villunger, A.; Herzog, S.

10.1101/858647 — molecular biology — Posted on 2019-11-29

229 High-throughput reclassification of SCN5A variants

Glazer, A. M.; Wada, Y.; Li, B.; Muhammad, A.; Kalash, O. R.; O'neill, M. J.; Shields, T.; Hall, L.; Short, L.; Blair, M. A.; Kroncke, B. M.; Capra, J. A.; Roden, D. M.

10.1101/858175 — genetics — Posted on 2019-11-29

230 Cancer modeling in colorectal organoids reveals intrinsic differences between oncogenic RAS and BRAF variants

Post, J. B.; Hami, N.; Lohuis, J.; van de Ven, M.; de Korte-Grimmerink, R.; Stangl, C. S.; Stelloo, E.; Verlaan, I.; van Rheenen, J.; Snippert, H. J. G.

10.1101/860122 — cancer biology — Posted on 2019-11-29

231 Differential Gene Set Enrichment Analysis: A statistical approach to quantify the relative enrichment of two gene sets

Joly, J. H.; Lowry, W.; Graham, N. A.

10.1101/860460 — bioinformatics — Posted on 2019-11-29

232 Combining electrophysiology with MRI enhances learning of surrogate-biomarkers

Engemann, D. A.; Kozynets, O.; Sabbagh, D.; Lemaitre, G.; Varoquaux, G.; Liem, F.; Gramfort, A.

10.1101/856336 — neuroscience — Posted on 2019-11-29

233 Schizotypy-related magnetization of cortex in healthy adolescence is co-located with expression of schizophrenia risk genes

Romero-Garcia, R.; Seidlitz, J.; Whitaker, K. J.; Morgan, S. E.; Fonagy, P.; Dolan, R. J.; Jones, P. B.; Goodyer, I. M.; Suckling, J.; NSPN Consortium, ; Vertes, P. E.; Bullmore, E. T.

10.1101/487108 — neuroscience — Posted on 2019-11-29

234 Raw milk for human consumption may carry antimicrobial resistance genes

Toth, A. G.; Csabai, I.; Kriko, E.; Tozser, D.; Maroti, G.; Patai, A. V.; Makrai, L.; Szita, G.; Solymosi, N.

10.1101/853333 — genomics — Posted on 2019-11-29

235 Whole genome sequencing analysis of the cardiometabolic proteome

Gilly, A. L.; Park, Y.-C.; Png, G.; Bjornland, T.; Southam, L.; Suveges, D.; Neumeyer, S.; Fischer, I.; Barysenka, A.; Rayner, N. W.; Tsafantakis, E.; Karaleftheri, M.; Dedoussis, G.; Zeggini, E.

10.1101/854752 — genetics — Posted on 2019-11-29

236 Robust lysosomal rewiring in Mtb infected macrophages mediated by Mtb lipids restricts the intracellular bacterial survival

Sachdeva, K.; Goel, M.; Sudhakar, M.; Mehta, M.; Raju, R.; Raman, K.; Singh, A.; Sundaramurthy, V.

10.1101/845800 — cell biology — Posted on 2019-11-29

237 Glioblastoma stem cells induce quiescence in surrounding neural stem cells via Notch signalling

Lawlor, K.; Marques-Torrejon, M. A.; Dharmalingham, G.; El-Azhar, Y.; Schneider, M. D.; Pollard, S. M.; Rodriguez, T. A.

10.1101/856062 — cancer biology — Posted on 2019-11-29

238 Signal-space projection suppresses the tACS artifact in EEG recordings

Vosskuhl, J.; Mutanen, T. P.; Neuling, T.; Ilmoniemi, R. J.; Herrmann, C. S.

10.1101/823153 — neuroscience — Posted on 2019-11-29

239 The effect of experimental lead pollution on DNA methylation in a wild bird population

Makinen, H.; van Oers, K.; Eeva, T.; Laine, V. N.; Ruuskanen, S.

10.1101/851998 — molecular biology — Posted on 2019-11-29

240 Co-ordinated regulation of cell survival and cell cycle pathways by DDR2-dependent SRF transcription factor in cardiac fibroblasts

Titus, A. S.; V, H.; Kailasam, S.

10.1101/857037 — molecular biology — Posted on 2019-11-29

241 Refining the transcriptome of the human malaria parasite Plasmodium falciparum using amplification-free RNA-seq

Chappell, L.; Ross, P.; Orchard, L.; Otto, T. D.; Berriman, M.; Rayner, J. C.; Llinas, M.

10.1101/852038 — genomics — Posted on 2019-11-29

242 Primate-restricted KRAB zinc finger proteins and target retrotransposons control gene expression in human neurons

Trono, D.; Turelli, P.; Playfoot, C.; Grun, D.; Raclot, C.; Pontis, J.; Coudray, A.; Thorball, C.; Duc, J.; Pankevich, E. V.; Deplancke, B.; Busskamp, V.

10.1101/856005 — evolutionary biology — Posted on 2019-11-29

243 Testes of DAZL null sheep lack spermatogonia and maintain normal somatic cells

McLean, Z.; Appleby, S. J.; Wei, J.; Snell, R. G.; Oback, B.

10.1101/848036 — developmental biology — Posted on 2019-11-29

244 Integrative Genomic Analysis and Functional Studies Reveal GP5, GRN, MPO and MCAM as Causal Protein Biomarkers for Platelet Traits

Lee, D. H.; Yao, C.; Bhan, A.; Schlaeger, T.; Keefe, J.; Rodriguez, B.; Hwang, S.-J.; Chen, M.-H.; Levy, D.; Johnson, A. D.

10.1101/854216 — genomics — Posted on 2019-11-29

245 microRNA profiling in the Weddell Seal suggests novel regulatory mechanisms contributing to diving adaptation

Penso Dolfin, L.; Haerty, W.; Hindle, A.; Di Palma, F.

10.1101/851394 — evolutionary biology — Posted on 2019-11-29

246 Unsupervised content-preserving image transformation for optical microscopy

Li, X.; Zhang, G.; Wu, J.; Xie, H.; Lin, X.; Qiao, H.; Wang, H.; Dai, Q.

10.1101/848077 — bioinformatics — Posted on 2019-11-29

247 Verifying molecular clusters by 2-color localization microscopy and significance testing

Arnold, A. M.; Schneider, M. C.; Huesson, C.; Sablatnig, R.; Brameshuber, M.; Baumgart, F.; Schuetz, G. J.

10.1101/847012 — biophysics — Posted on 2019-11-29

248 VIP interneurons selectively enhance weak but behaviorally-relevant stimuli.

Millman, D. J.; Ocker, G. K.; Caldejon, S.; Kato, I.; Larkin, J. D.; Lee, E. K.; Luviano, J.; Nayan, C.; Nguyen, T. V.; North, K.; Seid, S.; White, C.; Lecoq, J. A.; Reid, R. C.; Buice, M. A.; de Vries, S. E. J.

10.1101/858001 — neuroscience — Posted on 2019-11-29

249 Loss of BICD2 in muscle drives motor neuron loss in a developmental form of spinal muscular atrophy

Rossor, A. M.; Sleigh, J. N.; Groves, M.; Muntoni, F.; Reilly, M. M.; Hoogenraad, C.; Schiavo, G.

10.1101/854711 — neuroscience — Posted on 2019-11-29

250 Gamma coherence mediates interhemispheric integration during multiple object tracking

Bland, N. S.; Mattingley, J. B.; Sale, M. V.

10.1101/850545 — neuroscience — Posted on 2019-11-29

251 Spontaneous generation of innate number sense in untrained deep neural networks

Kim, G.; Jang, J.; Baek, S.; Song, M.; Paik, S.-B.

10.1101/857482 — neuroscience — Posted on 2019-11-29

252 Genome-scale Model Constrained by Proteomics Reveals Metabolic Rearrangements in the Heterologous Host Streptomyces coelicolor

Sulheim, S.; Kumelj, T.; van Dissel, D.; Salehzadeh-Yazdi, A.; Du, C.; Nieselt, K.; Almaas, E.; Wentzel, A.; Kerkhoven, E. J.

10.1101/796722 — systems biology — Posted on 2019-11-29

253 fCite: a fractional citation tool to quantify an individual's scientific research output

Kozlowski, L. P.

10.1101/771485 — scientific communication and education — Posted on 2019-11-29

254 Making the MOSTest of imaging genetics

van der Meer, D.; Frei, O.; Kaufmann, T.; Shadrin, A. A.; Devor, A.; Smeland, O. B.; Thompson, W.; Fan, C. C.; Holland, D.; Westlye, L. T.; Andreassen, O. A.; Dale, A.

10.1101/767905 — neuroscience — Posted on 2019-11-29

255 Extensive functional repertoire underpins complex behaviours: insights from Parkinson's disease

Sorrentino, P.; Rucco, R.; Baselice, F.; De Micco, R.; Tessitore, A.; Hillebrand, A.; Mandolesi, L.; Breakspear, M.; Gollo, L. L.; Sorrentino, G.

10.1101/823849 — neuroscience — Posted on 2019-11-29

256 Sleep promotes downward firing rate homeostasis

Torrado Pacheco, A.; Bottorff, J.; Turrigiano, G. G.

10.1101/827832 — neuroscience — Posted on 2019-11-29

257 Quantification of anticipation of excitement with three-axial model of emotion with EEG

Machizawa, M. G.; Lisi, G.; Kanayama, N.; Mizuochi, R.; Makita, K.; Sasaoka, T.; Yamawaki, S.

10.1101/659979 — neuroscience — Posted on 2019-11-29

258 Capsule Networks as Recurrent Models of Grouping and Segmentation

Doerig, A.; Schmittwilken, L.; Sayim, B.; Manassi, M.; Herzog, M. H.

10.1101/747394 — neuroscience — Posted on 2019-11-29

259 Genetic liability for internalizing versus externalizing behavior manifests in the developing and adult hippocampus: Insight from a meta-analysis of transcriptional profiling studies in a selectively-bred rat model

Birt, I. A.; Hagenauer, M. H.; Clinton, S. M.; Aydin, C.; Blandino, P.; Stead, J. D. H.; Hilde, K. L.; Meng, F.; Thompson, R. C.; Khalil, H. H.; Stefanov, A.; Maras, P. M.; Zhou, Z.; Hebda-Bauer, E. K.; Goldman, D.; Watson, S. J.; Akil, H.

10.1101/774034 — neuroscience — Posted on 2019-11-29

260 A novel vaccine targeting the viral protease cleavage sites protects Mauritian cynomolgus macaques against vaginal SIVmac251 infection

Li, H.; Omange, R. W.; Liang, B.; Toledo, N. P.; Hai, Y.; Liu, L. R.; Schalk, D.; Campo, J. C.; Dacoba, T. G.; Lambe, A. B.; Lim, S.-Y.; Li, L.; Kashem, M. A.; Wan, Y.; Correia-Pinto, J. F.; Liu, X.; Balshaw, R. F.; Li, Q.; Schultz-Darken, N.; Alonso, M. J.; Whitney, J. B.; Plummer, F. A.; Luo, M.

10.1101/842955 — microbiology — Posted on 2019-11-29

261 High-depth resequencing reveals hybrid population and insecticide resistance characteristics of fall armyworm (Spodoptera frugiperda) invading China

Zhang, L.; Liu, B.; Zheng, W.; Liu, C.; Zhang, D.; Zhao, S.; Xu, P.; Wilson, K.; Withers, A.; Jones, C. M.; Smith, J. A.; Chipabika, G.; Kachigamba, D. L.; Nam, K.; d'Alencon, E.; Liu, B.; Liang, X.; Jin, M.; Wu, C.; Chakrabarty, S.; Yang, X.; Jiang, Y.; Liu, J.; Liu, X.; Quan, W.; Wang, G.; Fan, W.; Qian, W.; Wu, K.; Xiao, Y.

10.1101/813154 — genomics — Posted on 2019-11-29

262 BIAFLOWS: A collaborative framework to benchmark bioimage analysis workflows

Rubens, U.; Mormont, R.; Baecker, V.; Michiels, G.; Paavolainen, L.; Ball, G.; Unay, D.; Pavie, B.; Chessel, A.; Scholz, L. A.; Maska, M.; Hoyoux, R.; Vandaele, R.; Stanciu, S. G.; Golani, O.; Sladoje, N.; Paul-Gilloteaux, P.; Maree, R.; Tosi, S.

10.1101/707489 — bioinformatics — Posted on 2019-11-29

263 LAB-AID (Laboratory Automated Interrogation of Data): an interactive web application for visualization of multi-level data from biological experiments

Kozic, Z.; Booker, S.; Dando, O.; Kind, P.

10.1101/763318 — bioinformatics — Posted on 2019-11-29

264 Detecting Zero-Inflated Genes in Single-Cell Transcriptomics Data

Clivio, O.; Lopez, R.; Regier, J.; Gayoso, A.; Jordan, M. I.; Yosef, N.

10.1101/794875 — bioinformatics — Posted on 2019-11-29

265 An Active Inference Approach to Dissecting Reasons for Non-Adherence to Antidepressants

Smith, R.; Khalsa, S.; Paulus, M.

10.1101/743542 — neuroscience — Posted on 2019-11-29

266 An MRI-Derived Neuroanatomical Atlas of the Fischer 344 Rat Brain

Goerzen, D.; Fowler, C.; Devenyi, G. A.; Germann, J.; Madularu, D.; Chakravarty, M.; Near, J.

10.1101/743583 — neuroscience — Posted on 2019-11-29

267 Acute effects of Adaptive Deep Brain Stimulation in Parkinson's disease

Pina-Fuentes, D.; van Dijk, M. J. M. C.; van Zijl, J. C.; Moes, H. R.; Oterdoom, M. D. L. M.; Little, S.; Brown, P.; Beudel, M.

10.1101/749903 — neuroscience — Posted on 2019-11-29

268 A widespread family of heat-resistant obscure (Hero) proteins protect against protein instability and aggregation

Tsuboyama, K.; Osaki, T.; Matsuura-Suzuki, E.; Kozuka-Hata, H.; Okada, Y.; Oyama, M.; Ikeuchi, Y.; Iwasaki, S.; Tomari, Y.

10.1101/816124 — molecular biology — Posted on 2019-11-29

269 Discovery of CD80 and CD86 as recent activation markers on regulatory T cells by protein-RNA single-cell analysis

Trzupek, D.; Dunstan, M.; Cutler, A. J.; Lee, M.; Godfrey, L.; Aschenbrenner, D.; Uhlig, H. H.; Wicker, L.; Todd, J. A.; Ferreira, R. C.

10.1101/706275 — immunology — Posted on 2019-11-29

Hünicken, L. A.; Sylvester, F.; Bonel, N.

10.1101/618082 — ecology — Posted on 2019-11-29

271 Neural hierarchical models of ecological populations

Joseph, M. B.

10.1101/759944 — ecology — Posted on 2019-11-29

272 Coiled-coil registry shifts in the F684I mutant of Bicaudal result in cargo-independent activation of dynein motility

Cui, H.; Trybus, K. M.; Ali, M. Y.; Goyal, P.; Zhang, K.; Loh, J. Y.; Solmaz, S. R.

10.1101/776187 — biophysics — Posted on 2019-11-29

273 Functional harmonics reveal multi-dimensional basis functions underlying cortical organization

Glomb, K.; Kringelbach, M.; Deco, G.; Hagmann, P.; Pearson, J.; Atasoy, S.

10.1101/699678 — neuroscience — Posted on 2019-11-29

274 Identification of RNA 3' ends and termination sites in Haloferax volcanii

Berkemer, S. J.; Maier, L.-K.; Amman, F.; Bernhart, S. H.; Wörtz, J.; Märkle, P.; Pfeiffer, F.; Stadler, P. F.; Marchfelder, A.

10.1101/748780 — molecular biology — Posted on 2019-11-29

275 Newborn T Cell and Microbiota Developmental Trajectories and Their Inter-related Roles in Health and Disease

Grier, A.; Laniewski, N.; Gill, A. L.; Kessler, H. A.; Huyck, H.; Holden-Wiltse, J.; Bandyopadhyay, S.; Carnahan, J.; Dylag, A. M.; Topham, D. J.; Falsey, A. R.; Caserta, M. T.; Pryhuber, G. S.; Gill, S. R.; McDavid, A.; Scheible, K. M.

10.1101/736090 — immunology — Posted on 2019-11-29

276 Assessing genomic diversity and signatures of selection in Original Braunvieh cattle using whole-genome sequencing data

Bhati, M.; Kadri, N. K.; Crysnanto, D.; Pausch, H.

10.1101/703439 — genomics — Posted on 2019-11-29

277 Augmenting Protein Network Embeddings with Sequence Information

Kane, H.; Coulibali, M.; Abdalla, A.; Ajanoh, P.

10.1101/730481 — bioinformatics — Posted on 2019-11-29

278 An Automated and Modular Deep Learning Approach for DNA Methylation Analysis

Levy, J. J.; Titus, A. J.; Petersen, C. L.; Chen, D.; Salas, L. A.; Christensen, B. C.

10.1101/692665 — bioinformatics — Posted on 2019-11-29

279 Effects of size and elasticity on the relation between flow velocity and wall shear stress in side-wall aneurysms: A lattice Boltzmann-based computer simulation study

Wang, H.; Krüger, T.; Varnik, F.

10.1101/711564 — bioengineering — Posted on 2019-11-29

280 Notch signaling and taxis mechanims regulate early stage angiogenesis: A mathematical and computational model

Vega, R.; Carretero, M.; Travasso, R. D. M.; Bonilla, L. L.

10.1101/569897 — systems biology — Posted on 2019-11-29

281 Implications of data-driven analyses for personalized therapy in psychosis: a systematic review of cluster- and trajectory-based modelling studies

Habtewold, T. D.; Rodijk, L. H.; Liemburg, E. J.; Sidorenkov, G.; Boezen, H. M.; Bruggeman, R.; Alizadeh, B. Z.

10.1101/599498 — neuroscience — Posted on 2019-11-29

282 On the efficacy of restoration in stream networks: comments, critiques, and prospective recommendations

Murray-Stoker, D.

10.1101/611939 — ecology — Posted on 2019-11-29

283 Lineage EM Algorithm for Inferring Latent States from Cellular Lineage Trees

Nakashima, S.; Sughiyama, Y.; Kobayashi, T. J.

10.1101/488981 — evolutionary biology — Posted on 2019-11-29

284 Cell-based simulations of Notch-dependent cell differentiation on growing domains

Stopka, A.; Boareto, M.; Iber, D.

10.1101/859363 — developmental biology — Posted on 2019-11-29

285 Hierarchical modeling of mechano-chemical dynamics of epithelial sheets across cells and tissue

Asakura, Y.; Kondo, Y.; Aoki, K.; Naoki, H.

10.1101/859348 — biophysics — Posted on 2019-11-29

286 A physicochemical roadmap of yeast replicative aging

Mouton, S. N.; Thaller, D.; Crane, M. M.; Rempel, I. L.; Steen, A.; Kaeberlein, M.; Lusk, C. P.; Boersma, A.; Veenhoff, L. M.

10.1101/858720 — biophysics — Posted on 2019-11-29

287 Nanotopography enhances dynamic remodeling of tight junction proteins through cytosolic complexes

Huang, X.; Shi, X.; Hansen, M. E.; Nemeth, C. L.; Celli, A.; Huang, B.; Mauro, T.; Koval, M.; Desai, T.

10.1101/858118 — cell biology — Posted on 2019-11-28

288 Proteoglycan IMPG2 shapes the interphotoreceptor matrix and modulates vision

Ramamurthy, V.; Salido, E. M.

10.1101/859116 — cell biology — Posted on 2019-11-29

289 E2F-dependent genetic oscillators control endoreplication

Moon, N. S.; Kim, M.

10.1101/858746 — cell biology — Posted on 2019-11-29

290 FLIP(L) determines p53 induced life or death

Lees, A.; McIntyre, A. J.; Falcone, F.; Crawford, N. T.; McCann, C.; Quinn, G. P.; Roberts, J. Z.; Sessler, T.; Gallagher, P. F.; McAllister, K.; McLaughlin, K.; Allen, W. L.; Holohan, C.; Egan, L. J.; Ryan, A. E.; Labonte-Wilson, M.; Dunne, P. D.; Wappett, M.; Coyle, V. M.; Johnston, P.; Kerr, E. M.; Longley, D. B.; McDade, S. S.

10.1101/858688 — cancer biology — Posted on 2019-11-28

291 Grb2 binding induces phosphorylation-independent activation of Shp2

Lin, C.-C.; Wieteska, L.; Suen, K. M.; Kalverda, A.; Ahmed, Z.; Ladbury, J. E.

10.1101/859108 — cancer biology — Posted on 2019-11-29

292 Multiple roles for laccase2 in butterfly wing pigmentation, scale development, and cuticle tanning

Peng, C. L.; Mazo-Vargas, A.; Brack, B. J.; Reed, R. D.

10.1101/858167 — developmental biology — Posted on 2019-11-28

293 TAT-Cx43266-283 impairs metabolic plasticity in glioma stem cells in vitro and in vivo

G. Pelaz, S.; Jaraiz-Rodriguez, M.; Talaveron, R.; Garcia-Vicente, L.; Gomez de Cedron, M.; Tabernero, M.; Ramirez de Molina, A.; Lillo, C.; Medina, J. M.; Tabernero, A.

10.1101/858563 — cancer biology — Posted on 2019-11-28

294 Single-cell RNA-seq data reveals TNBC tumor heterogeneity through characterizing subclone compositions and proportions

Wang, W.; Xu, J.; Wang, S.; Xia, P.; Zhang, L.; Yu, L.; Wu, J.; Song, Q.; Zhang, B.; Xu, C.; Xiao, Y.

10.1101/858290 — cancer biology — Posted on 2019-11-28

295 A male infertility mutation reverts NANOS1 activity from anti-apoptotic to pro-apoptotic by disrupting repression of GADD45A, GADD45B, GADD45G and RHOB genes

Janecki, D. M.; Ilaslan, E.; Smialek, M. J.; Sajek, M. J.; Kotecki, M.; Ginter-Matuszewska, B.; Spik, A.; Krainski, P.; Jaruzelska, J.; Kusz-Zamelczyk, K.

10.1101/858654 — developmental biology — Posted on 2019-11-28

296 Cell Tracking Profiler: a user-driven analysis framework for evaluating 4D live cell imaging data

Mitchell, C.; Caroff, L.; Vigilante, A.; Solis-Lemus, J. A.; Reyes-Aldasoro, C. C.; de Chaumont, F.; Dufour, A.; Dallongeville, S.; Olivo-Marin, J.-C.; Knight, R. D.

10.1101/859397 — cell biology — Posted on 2019-11-28

297 Frequent extrachromosomal oncogene amplification drives aggressive tumors

Kim, H.; Nguyen, N.; Turner, K.; Wu, S.; Liu, J.; Deshpande, V.; Namburi, S.; Chang, H. Y.; Beck, C.; Mischel, P. S.; Bafna, V.; Verhaak, R. G. W.

10.1101/859306 — cancer biology — Posted on 2019-11-28

298 Biophysical characterization reveals the similarities of liposomes produced using microfluidics and electroformation

Schaich, M.; Sobota, D.; Sleath, H.; Cama, J.; Keyser, U. F.

10.1101/859124 — biophysics — Posted on 2019-11-28

299 Effects of a novel three-dimensional grid intrauterine device on the uterus, steroid receptor and PAX2 of rhesus macaques

Zhang, M.-H.; Zhai, L.-P.; Yu, L.; Song, X.; Yu, J.-C.; Qiu, Y.

10.1101/858886 — zoology — Posted on 2019-11-28

300 Physiological response to slalom water skiing: A case study of a sit-skier with paraplegia

Suarez-Iglesias, D.; Perez, C. A.; Rodriguez-Marroyo, J. A.; Villa-Vicente, J. G.

10.1101/858902 — physiology — Posted on 2019-11-28

301 Clinically significant acute pain disturbs motor cortex intracortical inhibition and facilitation in orthopedic trauma patients: A TMS study

Jodoin, M.; Rouleau, D. M.; Bellemare, A.; Provost, C.; Larson-Dupuis, C.; Sandman, E.; Laflamme, G.-Y.; Benoit, B.; Leduc, S.; Levesque, M.; Gosselin, N.; De Beaumont, L.

10.1101/858977 — neuroscience — Posted on 2019-11-28

302 Effects of temperature on Zika dynamics and control

Ngonghala, C. N.; Ryan, S. J.; Tesla, B.; Demokovsky, L. R.; Brindley, M. A.; Mordecai, E. A.; Murdock, C. C.; Bonds, M. H.

10.1101/855072 — ecology — Posted on 2019-11-28

303 Temporal and spatial modulation of the immune response of the murine Gl261 glioma tumor microenvironment

McKelvey, K. J.; Hudson, A. L.; Prasanna Kumar, R.; Wilmott, J. S.; Attrill, G. H.; Long, G. V.; Scolyer, R. A.; Clarke, S. J.; Wheeler, H. R.; Diakos, C. I.; Howell, V. M.

10.1101/858894 — cancer biology — Posted on 2019-11-28

304 The SWI/SNF subunits BRG1 affects alternative splicing by changing RNA binding factor interactions with RNA

Ganez Zapater, A.; Mackowiak, S. D.; Guo, Y.; Jordan Pla, A.; Friedländer, M. R.; Visa, N.; Östlund Farrants, A.-K.

10.1101/858852 — molecular biology — Posted on 2019-11-28

305 Pathogenicity of urinary tract infection Escherichia coli in Caenorhabditis elegans

Hashimoto, M.; Ma, Y.-F.; Wang, S.-T.; Chen, C.-S.; Teng, C.-H.

10.1101/858910 — microbiology — Posted on 2019-11-28

306 Genome-wide identification of a regulatory mutation in BMP15 controlling prolificacy in sheep

Chantepie, L.; Bodin, L.; Sarry, J.; Woloszyn, F.; Plisson-Petit, F.; Ruesche, J.; Drouilhet, L.; Fabre, S.

10.1101/858860 — genetics — Posted on 2019-11-28

307 Theoretical investigation of a genetic switch for metabolic adaptation

Laxhuber, K. S.; Morrison, M.; Phillips, R.

10.1101/858993 — biophysics — Posted on 2019-11-28

308 Large Ankyrin repeat proteins are formed with similar and energetically favorable units

Galpern, E. A.; Freiberger, M. I.; Ferreiro, D. U.

10.1101/858845 — bioinformatics — Posted on 2019-11-28

309 Rapid Alkalinization Factor (RALF) gene family genomic structure and transcriptional regulation during host-pathogen crosstalk in Fragaria vescaand Fragariax ananassastrawberry

Baraldi, E.; Negrini, F.; O'Grady, K.; Hyvonen, M.; Folta, K.

10.1101/858928 — plant biology — Posted on 2019-11-28

310 Cestode larvae excite host neuronal circuits via glutamatergic signaling.

Tomes, H.; de Lange, A.; Prodjinotho, U. F.; Mahanty, S.; Smith, K.; Horsnell, W.; Sikasunge, C.; da Costa, C. P.; Raimondo, J. V.

10.1101/859009 — neuroscience — Posted on 2019-11-28

311 CD300lf is the primary physiologic receptor of murine norovirus but not human norovirus

Graziano, V.; Walker, F. C.; Kennedy, E. A.; Wei, J.; Ettayebi, K.; Simoes, M.; Filler, R.; Hassan, E.; Hsieh, L. L.; Kolawole, A. O.; Wobus, C.; Lindesmith, L. C.; Baric, R. S.; Estes, M.; Orchard, R. C.; Baldridge, M. T.; Wilen, C.

10.1101/859025 — microbiology — Posted on 2019-11-28

312 Socioeconomic impacts of elimination of Onchocerciasis in Abu-Hamed focus, northern Sudan: lessons after elimination

Ahmed, A.; Elbashir, A.; Adil, A.; A.Alim, A.; Mubarak, A.; Abdelrahman, D.; Mohammed, E.; Mohamed, N. S.; Elaagip, A.; Zarroug, I. M. A.; Mounkaila, N.; Tahir, H.

10.1101/858878 — microbiology — Posted on 2019-11-28

313 In silico design of a T-cell epitope vaccine candidate for parasitic helminth infection

Zawawi, A.; Forman, R.; Smith, H.; Mair, I.; Jibril, M.; Albaqshi, M.; Brass, A.; Derrick, J.; Else, K.

10.1101/859017 — immunology — Posted on 2019-11-28

314 An alternative spliceosome defined by distinct snRNAs in early zebrafish embryogenesis

Pagano, J. F. B.; Dekker, R. J.; Ensink, W. A.; van Olst, M.; Bos, A.; van Leeuwen, S.; de Leeuw, W. C.; Nehrdich, U.; Spaink, H. P.; Rauwerda, H.; Jonker, M. J.; Breit, T. M.

10.1101/858944 — developmental biology — Posted on 2019-11-28

315 Maternal- and Somatic-type snoRNA Expression and Processing in Zebrafish Development

Pagano, J. F. B.; Locati, M. D.; Ensik, W. A.; Olst, M. v.; van Leeuwen, S.; De Leeuw, W. C.; Nehrdich, U.; Spaink, H. P.; Rauwerda, H.; Jonker, M. J.; Dekker, R. J.; Breit, T. M.

10.1101/858936 — developmental biology — Posted on 2019-11-28

316 GCNCDA: A New Method for Predicting CircRNA-Disease Associations Based on Graph Convolutional Network Algorithm

wang, l.; You, Z.-H.; Li, Y.-M.; Zheng, K.; Huang, Y.-A.

10.1101/858837 — bioinformatics — Posted on 2019-11-28

317 An improved growth medium for enhanced inoculum production of the plant growth-promoting fungus Serendipita indica

Osman, M.; Stigloher, C.; Mueller, M. J.; Waller, F.

10.1101/857128 — plant biology — Posted on 2019-11-28

318 Adventures in Multi-Omics I: Combining heterogeneous data sets via relationships matrices

Akdemir, D.; Isidro Sanchez, J.

10.1101/857425 — genomics — Posted on 2019-11-28

319 Island species-area relationships in the Andaman islands emerge because rarer species are disproportionately favored on larger islands.

Gooriah, L.; Davidar, P.; Chase, J.

10.1101/857672 — ecology — Posted on 2019-11-28

320 A new workflow combining R packages for statistical analysis of metabolites

Ferrario, P. G.

10.1101/848812 — bioinformatics — Posted on 2019-11-28

321 Merger of Betula tatewakiana (Betulaceae) from northern Japan to northeast Asian B. ovalifolia based on ploidy level

Shiotani, Y.; Fukuda, T.; Pimenova, E.; Petrunenko, E.; Krestov, P.; Bondarchuk, S.; Nishikawa, Y.; Shimamura, T.; Fujimura, Y.; Nakamura, K.

10.1101/857359 — plant biology — Posted on 2019-11-28

322 CofActor: A light and redox-gated optogenetic clustering tool to study abnormal cytoskeletal dynamics in stressed cells

Salem, F. B.; Prabhu, V. V.; Kuyateh, A.-B.; Bunner, W. P.; Murashov, A. K.; Szatmari, E. M.; Hughes, R. M.

10.1101/857706 — neuroscience — Posted on 2019-11-28

323 Mushroom Body Homology and Divergence across Pancrustacea

Wolff, G. H.; Sayre, M. E.; Strausfeld, N. J.

10.1101/856872 — neuroscience — Posted on 2019-11-28

324 Herpes simplex virus glycoprotein C regulates low pH entry

Komala Sari, T.; Gianopulos, K. A.; Weed, D. J.; Schneider, S. M.; Pritchard, S. M.; Nicola, A. V.

10.1101/858472 — microbiology — Posted on 2019-11-28

325 Serpentine mountain uplift in northern Japan triggered the divergence of a narrow endemic from a widespread (sub)arctic Asia-Alaska species complex of Lagotis (Plantaginaceae)

Sugano, A.; Fukuda, T.; Murai, Y.; Olga, C.; Yoshihisa, S.; Tsunamoto, Y.; Tsuboi, H.; Nishikawa, Y.; Shimamura, T.; Fujita, H.; Nakamura, K.

10.1101/857441 — ecology — Posted on 2019-11-28

326 Extensive ethnolinguistic diversity in Vietnam reflects multiple sources of genetic diversity

Liu, D.; Duong, N. T.; Ton, N. D.; Phong, N. V.; Pakendorf, B.; Hai, N. V.; Stoneking, M.

10.1101/857367 — evolutionary biology — Posted on 2019-11-28

327 Transgenic mice expressing human alpha-synuclein in noradrenergic neurons develop locus coeruleus pathology and non-motor features of Parkinson's disease

Butkovich, L. M.; Houser, M. C.; Chalermpalanupap, T.; Porter-Stransky, K.; Eidson, L. N.; DeSousa Rodrigues, M. E.; Olivefr, D. L.; Kelly, S. D.; Chang, J.; Bengoa-Vergniory, N.; Wade-Martins, R.; Weinshenker, D.; Tansey, M. G.

10.1101/857987 — neuroscience — Posted on 2019-11-28

328 Satellite cell depletion in early adulthood attenuates muscular dystrophy pathogenesis

Boyer, J. G.; Han, S.; Prasad, V.; Khalil, H.; Vagnozzi, R. J.; Molkentin, J. D.

10.1101/857433 — molecular biology — Posted on 2019-11-28

329 How pirate phage interferes with helper phage: Comparison of the two distinct strategies

Mitarai, N.

10.1101/576587 — ecology — Posted on 2019-11-28

330 A subset of lung cancer cases shows robust signs of homologous recombination deficiency associated genomic aberration based molecular signatures

Diossy, M.; Sztupinszki, Z.; Borcsok, J.; Krzystanek, M.; Tisza, V.; Spisak, S.; Rusz, O.; Timar, J.; Csabai, I.; Moldvay, J.; Pedersen, A. G.; Szuts, D.; Szallasi, Z.

10.1101/576223 — cancer biology — Posted on 2019-11-28

331 Notch signaling and taxis mechanims regulate early stage angiogenesis: A mathematical and computational model

Vega, R.; Carretero, M.; Travasso, R. D. M.; Bonilla, L. L.

10.1101/569897 — systems biology — Posted on 2019-11-28

332 G1/S transcription factors assemble in discrete clusters that increase in number as cells grow

Black, L.; Tollis, S.; Fu, G.; Fiche, J.-B.; Dorsey, S.; Cheng, J.; Notley, S.; Crevier, B.; Bigness, J.; Nollmann, M.; Tyers, M.; Royer, C. A.

10.1101/574772 — cell biology — Posted on 2019-11-28

333 Cholinergic switch between two different types of slow waves in cerebral cortex

Nghiem, T.-A. E.; Tort-Colet, N.; Gorski, T.; Ferrari, U.; Moghimyfiroozabad, S.; Goldman, J. S.; Telenczuk, B.; Capone, C.; Bal, T.; di Volo, M.; Destexhe, A.

10.1101/430405 — neuroscience — Posted on 2019-11-28

334 Identification of novel glycosylation events on human serum-derived Factor IX

Pegg, C. L.; Zacchi, L. F.; Roche Recinos, D.; Howard, C. B.; Schulz, B. L.

10.1101/567941 — biochemistry — Posted on 2019-11-28

335 Strand Orientation Bias Detector (SOBDetector) to remove FFPE sequencing artifacts

Diossy, M.; Sztupinszki, Z.; Krzystanek, M.; Eklund, A. C.; Csabai, I.; Pedersen, A. G.; Szallasi, Z.

10.1101/386417 — bioinformatics — Posted on 2019-11-28

336 Incorporating trait-based mechanisms, alternative interaction modes and forbidden links increases the minimum dimensionality of ecological networks

Kiziridis, D. A.; Boddy, L.; Eastwood, D. C.; Yuan, C.; Fowler, M. S.

10.1101/192260 — ecology — Posted on 2019-11-28

337 Targeting DDR1 and DDR2 overcomes matrix-mediated melanoma cell adaptation to BRAF-targeted therapy

Tartare-Deckert, S.; Berestjuk, I.; Lecacheur, M.; Diazzi, S.; Rovera, C.; Prod'homme, V.; Mallavialle, A.; Larbret, F.; Pisano, S.; Audebert, S.; Passeron, T.; Gaggioli, C.; Girard, C.; Deckert, M.

10.1101/857896 — cancer biology — Posted on 2019-11-28

338 Maternal- and Somatic-type snoRNA Expression and Processing in Zebrafish Development

Pagano, J. F. B.; Locati, M. D.; Ensik, W. A.; Olst, M. v.; van Leeuwen, S.; De Leeuw, W. C.; Nehrdich, U.; Spaink, H. P.; Rauwerda, H.; Jonker, M. J.; Dekker, R. J.; Breit, T. M.

10.1101/858936 — developmental biology — Posted on 2019-11-28

339 Distinct transcriptional programs of SOX2 in different types of small cell lung cancers

Tenjin, Y.; Matsuura, K.; Kudoh, S.; Usuki, S.; Yamada, T.; Matsuo, A.; Sato, Y.; Saito, H.; Fujino, K.; Wakimoto, J.; Ichimura, T.; Kohrogi, H.; Sakagami, T.; Niwa, H.; Ito, T.

10.1101/857144 — cancer biology — Posted on 2019-11-28

340 Rapid Alkalinization Factor (RALF) gene family genomic structure and transcriptional regulation during host-pathogen crosstalk in Fragaria vescaand Fragariax ananassastrawberry

Baraldi, E.; Negrini, F.; O'Grady, K.; Hyvonen, M.; Folta, K.

10.1101/858928 — plant biology — Posted on 2019-11-28

341 CD300lf is the primary physiologic receptor of murine norovirus but not human norovirus

10.1101/859025 — microbiology — Posted on 2019-11-28

342 Trem-2 modulation of gut microbiota is blunted during hepatotoxic injury and uncoupled from liver repair responses

Coelho, I.; Duarte, N.; Macedo, M. P.; Penha-Goncalves, C.

10.1101/857078 — microbiology — Posted on 2019-11-28

343 In silico design of a T-cell epitope vaccine candidate for parasitic helminth infection

Zawawi, A.; Forman, R.; Smith, H.; Mair, I.; Jibril, M.; Albaqshi, M.; Brass, A.; Derrick, J.; Else, K.

10.1101/859017 — immunology — Posted on 2019-11-28

344 Kinetochore phosphatases suppress autonomous kinase activity to control the spindle assembly checkpoint

Cordeiro, M. H.; Smith, R. J.; Saurin, A. T.

10.1101/856773 — cell biology — Posted on 2019-11-28

345 FANCD2-FANCI is a clamp stabilized on DNA by monoubiquitination during DNA repair

Alcon, P.; Shakeel, S.; Patel, K. J.; Passmore, L. A.

10.1101/858225 — molecular biology — Posted on 2019-11-28

346 Secure data storage on DNA hard drives

Chen, K.; Zhu, J.; Boskovic, F. N.; Keyser, U. F.

10.1101/857748 — biophysics — Posted on 2019-11-28

347 Evaluating molecular modeling tools for thermal stability using an independently generated dataset

Huang, P.; Chu, S. K. S.; Frizzo, H. N.; Connolly, M. P.; Caster, R. W.; Siegel, J. B.

10.1101/856732 — biophysics — Posted on 2019-11-28

348 Kinetic control of stationary flux ratios for a wide range of biochemical processes

Mallory, J. D.; Kolomeisky, A.; Igoshin, O. A.

10.1101/858126 — biophysics — Posted on 2019-11-28

349 The genomic landscape of intrinsic and acquired resistance to cyclin-dependent kinase 4/6 inhibitors in patients with hormone receptor positive metastatic breast cancer

Wander, S. A.; Cohen, O.; Gong, X.; Johnson, G. N.; Buendia-Buendia, J.; Lloyd, M. R.; Kim, D.; Luo, F.; Mao, P.; Helvie, K.; Kowalski, K. J.; Nayar, U.; Waks, A. G.; Parsons, S.; Martinez, R.; Litchfield, L. M.; Ye, X. S.; Yu, C. P.; Jansen, V. M.; Stille, J. R.; Smith, P. S.; Oakley, G. J.; Chu, Q.; Batist, G.; Hughes, M.; Kremer, J. D.; Garraway, L. A.; Winer, E. P.; Tolaney, S. M.; Lin, N. U.; Buchanan, S.; Wagle, N.

10.1101/857839 — cancer biology — Posted on 2019-11-28

350 Treadmilling FtsZ polymers drive the directional movement of sPG-synthesis enzymes via a Brownian ratchet mechanism

McCausland, J. W.; Yang, X.; Lyu, Z.; Söderström, B. W.; Xiao, J.; Liu, J.

10.1101/857813 — biophysics — Posted on 2019-11-28

351 En bloc preparation of Drosophila brains enables high-throughput FIB-SEM connectomics

Lu, Z.; Xu, C. S.; Hayworth, K. J.; Rivlin, P.; Scheffer, L.; Rubin, G. M.; Hess, H.; Meinertzhagen, I. A.

10.1101/855130 — neuroscience — Posted on 2019-11-27

352 Structural Insights into Negative Cooperativity between Gemin2 and RNA in Sm-class snRNP Assembly

Zhang, R.

10.1101/857334 — molecular biology — Posted on 2019-11-27

353 Multi-colour DNA-qPAINT reveals how Csk nano-clusters regulate T-cell receptor signalling

Simoncelli, S.; Griffie, j.; Williamson, D. J.; Bibby, J.; Bray, C.; Zamoyska, R.; Cope, A. P.; Owen, D.

10.1101/857516 — immunology — Posted on 2019-11-27

354 Cell-fate plasticity, adhesion and cell sorting complementarily establish a sharp midbrain-hindbrain boundary

Kesavan, G.; Hans, S.; Brand, M.

10.1101/857870 — developmental biology — Posted on 2019-11-27

355 Chemokine-biased robust self-organizing polarization of migrating cells in vivo

Olguin-Olguin, A.; Aalto, A.; Maugis, B.; Reichman-Fried, M.; Raz, E.

10.1101/857623 — cell biology — Posted on 2019-11-27

356 Murine lupus is Neutrophil Elastase-independent in the MRL.Faslprmodel

Gordon, R.; Tilstra, J.; Marinov, A.; Nickerson, K.; Bastacky, S.; Shlomchik, M.

10.1101/857243 — immunology — Posted on 2019-11-27

357 MED19 alters AR occupancy and gene expression in prostate cancer cells, driving MAOA expression and growth under low androgen

Weber, H.; Ruoff, R.; Garabedian, M.

10.1101/857235 — cancer biology — Posted on 2019-11-27

358 Regulator of Gene Silencing-Calmodulin associates with mRNA granules and the autophagy protein ATG8

Conner, W. C.; Lokdarshi, A.; Roberts, D. M.

10.1101/858092 — plant biology — Posted on 2019-11-27

359 The frequency gradient of human resting-state brain oscillations follows cortical hierarchies

Mahjoory, K.; Schoffelen, J.-M.; Keitel, A.; Gross, J.

10.1101/857656 — neuroscience — Posted on 2019-11-27

360 Systems analyses of key metabolic modules of floral and extrafloral nectaries of cotton

Chatt, E. C.; Mahalim, S.-N.; Mohd-Fadzil, N.-A.; Roy, R.; Klinkenberg, P. M.; Horner, H. T.; Hampton, M.; Carter, C. J.; Nikolau, B. J.

10.1101/857771 — plant biology — Posted on 2019-11-27

361 Structure and assembly of calcium homeostasis modulator proteins

Syrjanen, J. L.; Michalski, K.; Chou, T.-H.; Grant, T.; Rao, S.; Simorowski, N.; Tucker, S. J.; Grigorieff, N.; Furukawa, H.

10.1101/857698 — biophysics — Posted on 2019-11-27

362 A commonly used photosynthetic inhibitor fails to block electron flow to photosystem I in intact systems

Fitzpatrick, D.; Aro, E.-M.; Tiwari, A.

10.1101/857177 — plant biology — Posted on 2019-11-27

363 Barking up the right tree: Univariate and multivariate fMRI analyses of homonym comprehension

Hoffman, P.; Tamm, A.

10.1101/857268 — neuroscience — Posted on 2019-11-27

364 Profiling of chromatin accessibility across Aspergillus species and identification of transcription factor binding sites in the Aspergillus genome using filamentous fungi ATAC-seq

Huang, L.; Li, X.; Dong, L.; Wang, B.; Pan, L.

10.1101/857284 — genomics — Posted on 2019-11-27

365 A limited set of transcriptional programs define major histological types and provide the molecular basis for a cellular taxonomy of the human body

Breschi, A.; Munoz-Aguirre, M.; Wucher, V.; Davis, C. A.; Garrido-Martin, D.; Djebali, S.; Gillis, J.; Pervouchine, D. D.; Vlasova, A.; Dobin, A.; Zaleski, C.; Drenkow, J.; Danyko, C.; Scavelli, A.; Reverter, F.; Snyder, M. P.; Gingeras, T. R.; Guigo, R.

10.1101/857169 — genomics — Posted on 2019-11-27

366 Lfc/Arhgef2 regulates mitotic spindle orientation in hematopoietic stem and progenitor cells and is essential for productive hematopoiesis

Chan, D. C. H.; Vujovic, A.; Xu, J.; Gordon, V.; Wong, N.; de Rooij, L. P. M. H.; Joyce, C. E.; La Rose, J.; Sandi, M.-J.; Doble, B. W.; Novina, C. D.; Rottapel, R. K.; Hope, K. J.

10.1101/855577 — cell biology — Posted on 2019-11-27

367 Two-way migration of Lychnis wilfordii caused by the circular landform of Japan-Korea-northeast China-Russian Far East region and its suggestion for conservation in northeast Asia

Tamura, S.; Kwak, M.-H.; Kokubugata, G.; Park, C.-h.; Lee, B.-Y.; Fukuda, T.; Petrunenko, E.; Koksheeva, I.; Pimenova, E.; Krestov, P.; Bondarchuk, S.; Ma, J.-S.; Zhou, H.-C.; Tsuboi, H.; Nishikawa, Y.; Shimamura, T.; Fujita, H.; Nakamura, K.

10.1101/857227 — evolutionary biology — Posted on 2019-11-27

368 Social status influences normal and pathological behaviors in mice, a role for dopamine and stress signaling

Battivelli, D.; Vernochet, C.; Nguyen, C.; Bhattacharya, S.; Zayed, A.; Meirsman, A. C.; Messaoudene, S.; Fieggen, A.; Tassin, J.-P.; Marti, F.; Faure, P.; Parnaudeau, S.; Tronche, F.

10.1101/856781 — animal behavior and cognition — Posted on 2019-11-27

369 Refinement and reactivation of a taste-responsive hippocampal network

Herzog, L. E.; Katz, D. B.; Jadhav, S. P.

10.1101/744714 — neuroscience — Posted on 2019-11-27

370 Thermodynamic modelling of synthetic communities predicts minimum free energy requirements for sulfate reduction and methanogenesis.

Delattre, H.; Chen, J.; Wade, M.; Soyer, O. S.

10.1101/857276 — microbiology — Posted on 2019-11-27

371 Cross-disorder genetic analyses implicate dopaminergic signaling as a biological link between Attention-Deficit/Hyperactivity Disorder and obesity measures

Mota, N. R.; Poelmans, G.; Klein, M.; Torrico, B.; Fernandez-Castillo, N.; Cormand, B.; Reif, A.; Franke, B.; Arias-Vasquez, A.

10.1101/573808 — genetics — Posted on 2019-11-27

372 Host community assembly modifies the relationship between host and parasite richness

Halliday, F. W.; Heckman, R. W.; Wilfahrt, P. A.; Mitchell, C. E.

10.1101/857151 — ecology — Posted on 2019-11-27

373 Revisiting Feature Selection with Data Complexity for Biomedicine

Dong, T. N.; Khosla, M.

10.1101/754630 — bioinformatics — Posted on 2019-11-27

374 RBM45 associates with nuclear stress bodies and forms nuclear inclusions during chronic cellular stress and in neurodegenerative diseases

Collins, M.; Li, Y.; Bowser, R.

10.1101/856880 — neuroscience — Posted on 2019-11-27

Ziaei, M.; Bonyadi, M. R.; Reutens, D.

10.1101/854224 — neuroscience — Posted on 2019-11-27

376 Genomic features of asexual animals

Jaron, K. S.; Bast, J.; Nowell, R. W.; Ranallo-Benavidez, T. R.; Robinson-Rechavi, M.; Schwander, T.

10.1101/497495 — genomics — Posted on 2019-11-27

377 Loops linking secondary structure elements affect the stability of molten globule intermediate state of apomyoglobin

Majorina, M. A.; Melnik, B. S.

10.1101/857102 — biophysics — Posted on 2019-11-27

378 Ensemble Machine Learning Modeling for the Prediction of Artemisinin Resistance in Malaria

Ford, C. T.; Janies, D. A.

10.1101/856922 — bioinformatics — Posted on 2019-11-27

379 Optimal Mass Transport for Robust Texture Analysis

Belkhatir, Z.; Iyer, A.; Mathews, J.; Pouryahya, M.; Nadeem, S.; Deasy, J.; Apte, A.; Tannenbaum, A.

10.1101/855221 — bioengineering — Posted on 2019-11-27

380 Self-other representation in the social brain reflects social connection

Courtney, A. L.; Meyer, M. L.

10.1101/856856 — neuroscience — Posted on 2019-11-27

381 An optimized 16S rRNA sequencing protocol for vaginal microbiome to avoid biased abundance estimation

zhang, Q.; Zhang, L.; Wang, Y.; Zhao, M.; Chen, R.; Tao, Z.; Lyu, T.; Huang, Z.; Liao, Q.

10.1101/857052 — microbiology — Posted on 2019-11-27

382 Whole genome sequencing analysis of the cardiometabolic proteome

Gilly, A. L.; Park, Y.-C.; Png, G.; Bjornland, T.; Southam, L.; Suveges, D.; Neumeyer, S.; Fischer, I.; Barysenka, A.; Rayner, N. W.; Tsafantakis, E.; Karaleftheri, M.; Zeggini, E.

10.1101/854752 — genetics — Posted on 2019-11-27

383 Functional Vagotopy in the Cervical Vagus Nerve of the Domestic Pig: Implications for Vagus Nerve Stimulation

Settell, M. L.; Knudsen, B. E.; Dingle, A. M.; McConico, A. L.; Nicolai, E. N.; Trevathan, J. K.; Ross, E. K.; Pelot, N. A.; Grill, W. M.; Gustafson, K. J.; Shoffstall, A. J.; Williams, J. C.; Zeng, W.; Poore, S. O.; Populin, L. C.; Suminski, A. J.; Ludwig, K. A.

10.1101/856989 — neuroscience — Posted on 2019-11-27

384 A new role of hippocampus during logical reasoning and belief bias in aging

Ziaei, M.; Bonyadi, M. R.; Reutens, D. C.

10.1101/854208 — neuroscience — Posted on 2019-11-27

385 An oral inoculation infant rabbit model for Shigella infection

Kuehl, C. J.; D'Gama, J. D.; Warr, A. R.; Waldor, M. K.

10.1101/857086 — microbiology — Posted on 2019-11-27

386 2'3'-cGAMP triggers a STING and NF-κB dependent broad antiviral response in Drosophila

Cai, H.; Holleufer, A.; Simonsen, B.; Schneider, J.; Lemoine, A.; Gad, H.-H.; Huang, J.; Huang, J.; Chen, D.; Peng, T.; Marques, J. T.; Hartmann, R.; Martins, N. E.; Imler, J.-L.

10.1101/852319 — immunology — Posted on 2019-11-27

387 Multi-site clonality analyses uncovers pervasive subclonal heterogeneity and branching evolution across melanoma metastases

Rabbie, R.; Ansari-Pour, N.; Cast, O.; Lau, D.; Scott, F.; Welsh, S. J.; Parkinson, C.; Khoja, L.; Moore, L.; Tullett, M.; Wong, K.; Ferreira, I.; Martinez Gomez, J. M.; Levesque, M.; Gallagher, F. A.; Jimenez-Sanchez, A.; Riva, L.; Miller, M. L.; Allinson, K.; Campbell, P.; Corrie, P.; Wedge, D. C.; Adams, D.

10.1101/848390 — genomics — Posted on 2019-11-27

388 A screen for gene paralogies delineating evolutionary branching order of early Metazoa

Erives, A. J.; Fritzsch, B.

10.1101/704551 — evolutionary biology — Posted on 2019-11-27

389 Trophic cascade driven by behavioural fine-tuning as naive prey rapidly adjust to a novel predator

Jolly, C. J.; Smart, A. S.; Moreen, J.; Webb, J. K.; Gillespie, G. R.; Phillips, B. L.

10.1101/856997 — ecology — Posted on 2019-11-27

390 Using machine learning to predict quantitative phenotypes from protein and nucleic acid sequences

Sauer, D.; Wang, D.-N.

10.1101/677328 — bioinformatics — Posted on 2019-11-27

391 How does individual variation in sociality influence fitness in prairie voles?

Sabol, A. C.; Lambert, C. T.; Keane, B.; Solomon, N. G.; Dantzer, B.

10.1101/676858 — animal behavior and cognition — Posted on 2019-11-27

392 Network potential identifies therapeutic miRNA cocktails in Ewings Sarcoma

Weaver, D. T.; Pishas, K. I.; Williamson, D.; Scarborough, J.; Lessnick, S. L.; Dhawan, A.; Scott, J. G.

10.1101/854695 — systems biology — Posted on 2019-11-27

393 Impact of soil salinity on the cowpea nodule-microbiome and the isolation of halotolerant PGPR strains to promote plant growth under salinity stress

Hirsch, A.; Mukhtar, S.; Khan, N.; Malik, K.; Humm, E.; Pellegrini, M.; Shi, B.; Briscoe, L.; Hunteman, M.; Clum, A.; Foster, B.; Foster, B.; Roux, S.; Palanlappan, K.; Varghese, N.; Mukherjee, S.; Reddy, T. B.; Daum, C.; Copeland, A.; Ivanova, N.; Kyrpides, N.; Shapiro, N.; Eloe-Fadrosh, E.; Maymon, M.; Mirza, M. S.; Mehnaz, S.

10.1101/856765 — plant biology — Posted on 2019-11-27

394 Mapping the steroid response to major trauma from injury to recovery: a prospective cohort study

Foster, M. A.; Taylor, A. E.; Hill, N. E.; Bentley, C.; Bishop, J.; Shaheen, F.; Gilligan, L.; Bion, J. F.; Fallowfield, J. L.; Woods, D. R.; Bancos, I.; Midwinter, M.; Lord, J.; Arlt, W.

10.1101/577502 — physiology — Posted on 2019-11-27

395 Automated quantification of synaptic boutons reveals their 3D distribution in the honey bee mushroom body

Cabirol, A.; Haase, A.

10.1101/589770 — neuroscience — Posted on 2019-11-27

396 A common model explaining flexible decision making, grid fields and cognitive control

Piray, P.; Daw, N. D.

10.1101/856849 — neuroscience — Posted on 2019-11-27

397 Identification of a common regulatory pathway that determines cell survival and cell cycle progression in cardiac fibroblasts

Titus, A. S.; V, H.; Kailasam, S.

10.1101/857037 — molecular biology — Posted on 2019-11-27

398 The UCSC Repeat Browser allows discovery and visualization of evolutionary conflict across repeat families

Fernandes, J. D.; Zamudio-Hurtado, A.; Kent, W. J.; Haussler, D.; Salama, S.; Haeussler, M.

10.1101/429613 — genomics — Posted on 2019-11-27

399 All is not decline across global vertebrate populations

Daskalova, G. N.; Myers-Smith, I. H.; Godlee, J. L.

10.1101/272898 — ecology — Posted on 2019-11-27

400 Spatial restriction of phosphoinositide metabolism is a molecular switch to promote metastasis.

Nacke, M.; Sandilands, E.; Nikolatou, K.; Roman-Fernandez, A.; Mason, S.; Patel, R.; Lilla, S.; Yelland, T.; McGarry, L.; Shanks, E.; Leung, H. Y.; Zanivan, S.; Ismail, S.; Markert, E.; Blyth, K.; Bryant, D.

10.1101/851410 — cancer biology — Posted on 2019-11-27

401 Modelling the Insect Navigation Toolkit: How the Mushroom Bodies and Central Complex Coordinate Guidance Strategies

Sun, X.; Yue, S.; Mangan, M.

10.1101/856153 — animal behavior and cognition — Posted on 2019-11-27

402 Protective functions of ZO-2/Tjp2 expressed in hepatocytes and cholangiocytes against liver injury and cholestasis

Xu, J.; Kausalya, J. P.; Van Hul, N.; Caldez, M. J.; Xu, S.; Ong, A. G. M.; Woo, W. L.; Ali, S. M.; Kaldis, P.; Hunziker, W.

10.1101/841080 — physiology — Posted on 2019-11-27

403 Orbitofrontal and Thalamic Influences on Striatal Involvement in Human Reversal Learning

Bell, T.; Langdon, A.; Lindner, M.; Lloyd, W.; Christakou, A.

10.1101/246371 — neuroscience — Posted on 2019-11-27

404 Behavioral signatures of a developing neural code

Avitan, L.; Pujic, Z.; Moelter, J.; McCullough, M.; Zhu, S.; Sun, B.; Myhre, A.-E.; Goodhill, G.

10.1101/856807 — neuroscience — Posted on 2019-11-27

405 Leopard: fast decoding cell type-specific transcription factor binding landscape at single-nucleotide resolution

Li, H.; Guan, Y.

10.1101/856823 — bioinformatics — Posted on 2019-11-27

406 Annotation-free Learning of Plankton for Classification and Anomaly Detection

PASTORE, V. P.; ZIMMERMAN, T.; BISWAS, S.; BIANCO, S.

10.1101/856815 — bioinformatics — Posted on 2019-11-27

407 ALTERED MERISTEM PROGRAM1 regulates leaf identity independent of miR156-mediated translational repression

Fouracre, J. P.; Chen, V. J.; Poethig, R. S.

10.1101/856864 — plant biology — Posted on 2019-11-27

408 Structural characterization of an intermediate reveals a unified mechanism for the CLC Cl-/H+ transport cycle

Chavan, T. S.; Cheng, R. C.; Jiang, T.; Mathews, I. I.; Stein, R. A.; Koehl, A.; Mchaourab, H. S.; Tajkhorshid, E.; Maduke, M.

10.1101/857136 — biophysics — Posted on 2019-11-27

409 Distinct microbiome composition of floor and air dust distort richness estimation in university dormitories

Sun, Y.; Li, Y.; Yuan, Q.; Zhang, Z.; Deng, Y.; Norbäck, D.; Zhang, X.; Fu, X.

10.1101/855684 — microbiology — Posted on 2019-11-27

410 Low temperature transcriptionally modulates natural peel degreening in lemon (Citrus limon L.) fruit independently of endogenous ethylene

MITALO, O. W.; Otsuki, T.; Okada, R.; Obitsu, S.; Masuda, K.; Hojo, Y.; Matsuura, T.; Mori, I. C.; Abe, D.; Asiche, W. O.; Akagi, T.; KUBO, Y.; Ushijima, K.

10.1101/855775 — plant biology — Posted on 2019-11-27

411 Systematic analyses of factors required for adhesion of Salmonella enterica serovar Typhimurium to corn salad (Valerianella locusta)

Hensel, M.; Elpers, L.; Kretzschmar, J.; Nuccio, S.-P.; Bäumler, A. J.

10.1101/855726 — microbiology — Posted on 2019-11-27

412 Discordant evolution of mitochondrial and nuclear yeast genomes at population level

De Chiara, M.; Friedrich, A.; Barre, B.; Breitenbach, M.; Schacherer, J.; Liti, G.

10.1101/855858 — genomics — Posted on 2019-11-27

413 The ZKIR Assay, a novel Real-Time PCR Method for the Detection of Klebsiella pneumoniae and Closely Related Species in Environmental Samples

BARBIER, E.; Rodrigues, C.; Depret, G.; Passet, V.; Gal, L.; Piveteau, P.; Brisse, S.

10.1101/855668 — microbiology — Posted on 2019-11-27

414 The mechanism of Hsp90-induced oligomerization of Tau

Weickert, S.; Wawrzyniuk, M.; John, L.; Rüdiger, S. G. D.; Drescher, M.

10.1101/614289 — biophysics — Posted on 2019-11-27

415 Evidence for the Involvement of Vernalization-related Genes in the Regulation of Cold-induced Ripening in 'D'Anjou' and 'Bartlett' Pear Fruit

Hewitt, S. L.; Hendrickson, C.; Dhingra, A.

10.1101/851733 — plant biology — Posted on 2019-11-27

416 Insight into the resistome and quorum sensing system of a divergent Acinetobacter pittii isolate from an untouched site of the Lechuguilla Cave

Gan, H. M.; Wengert, P.; Barton, H.; Hudson, A. O.; Savka, M.

10.1101/745182 — microbiology — Posted on 2019-11-27

417 A compact vocabulary of paratope-epitope interactions enables predictability of antibody-antigen binding

10.1101/759498 — immunology — Posted on 2019-11-27

418 Quantifying the prevalence of assortative mating in a human population

Jaffe, K.

10.1101/848911 — evolutionary biology — Posted on 2019-11-27

419 Glyoxylic acid overcomes 1-MCP-induced blockage of fruit ripening in Pyrus communis L. var. DAnjou

Hewitt, S. L.; Dhingra, A.

10.1101/852954 — plant biology — Posted on 2019-11-27

420 Normal levels of cellular sumoylation are largely dispensable for growth but facilitate heat tolerance in yeast

Moallem, M.; Akhter, A.; Babu, J.; Burke, G. L.; Khan, F.; Bergey, B. G.; Baig, M. S.; McNeil, J. B.; Rosonina, E.

10.1101/761759 — molecular biology — Posted on 2019-11-27

421 Cis-regulatory analysis of Onecut1 expression in fate-restricted retinal progenitor cells

Patoori, S.; Jean-Charles, N.; Gopal, A.; Sulaiman, S.; Gopal, S.; Wang, B.; Souferi, B.; Emerson, M.

10.1101/854778 — developmental biology — Posted on 2019-11-27

422 NDRG2 Regulates Adherens Junction Integrity to Restrict Colitis and Tumorigenesis

Ma, Y.; Wei, m.; Shen, l.; Xu, Y.; Liu, L.; Bu, X.; Qin, H.; Li, Z.; Wang, Z.; Wu, K.; Yao, L.; zhang, j.

10.1101/473397 — cancer biology — Posted on 2019-11-27

423 Chance and Necessity in the Pleiotropic Consequences of Adaptation for Budding Yeast

Jerison, E. R.; Nguyen Ba, A. N.; Desai, M. M.; Kryazhimskiy, S.

10.1101/724617 — evolutionary biology — Posted on 2019-11-27

424 PyBSASeq: a novel, simple, and effective algorithm for BSA-Seq data analysis

Zhang, J.; Panthee, D.

10.1101/654137 — bioinformatics — Posted on 2019-11-27

425 Dynamic Transcriptome, Accessible Genome and PGR Cistrome Profiles in the Human Myometrium

Wu, S.-P.; Anderson, M. L.; Wang, T.; Zhou, L.; Emery, O. M.; Li, X.; DeMayo, F. J.

10.1101/806950 — physiology — Posted on 2019-11-27

426 Interpreting neural decoding models using grouped model reliance

Valentin, S.; Harkotte, M.; Popov, T.

10.1101/656975 — neuroscience — Posted on 2019-11-27

427 Genomic investigation reveals contaminated detergent as the source of an ESBL-producing Klebsiella michiganensis outbreak in a neonatal unit

Chapman, P.; Forde, B.; Roberts, L. W.; Bergh, H.; Vasey, D.; Jennison, A. V.; Moss, S.; Paterson, D. L.; Beatson, S. A.; Harris, P. N. A.

10.1101/568154 — microbiology — Posted on 2019-11-27

428 A portable and cost-effective microfluidic system for massively parallel single-cell transcriptome profiling

Liu, C.; Wu, T.; Fan, F.; Liu, Y.; Wu, L.; Junkin, M.; Wang, Z.; Yu, Y.; Wang, W.; Wei, W.; Yuan, Y.; Wang, M.; Cheng, M.; Wei, X.; Xu, J.; Shi, Q.; Liu, S.; Chen, A.; Wang, O.; Ni, M.; Zhang, W.; Shang, Z.; Lai, Y.; Guo, P.; Ward, C.; Volpe, G.; Wang, L.; Zheng, H.; Liu, Y.; Peters, B. A.; Beecher, J.; Zhang, Y.; Esteban, M. A.; Hou, Y.; Xu, X.; Chen, I.-J.; Liu, L.

10.1101/818450 — genomics — Posted on 2019-11-27

429 Developmental trajectory of pre-hematopoietic stem cell formation fromendothelium

Zhu, Q.; Gao, P.; Tober, J.; Bennett, L.; Chen, C.; Uzun, Y.; Li, Y.; Mumau, M.; Yu, W.; He, B.; Speck, N.; Tan, K.

10.1101/848846 — developmental biology — Posted on 2019-11-27

430 Machine Source Localization of Tursiops Truncatus Whistle-like Sounds in a Reverberant Aquatic Environment

Woodward, S. F.; Reiss, D.; Magnasco, M.

10.1101/606673 — biophysics — Posted on 2019-11-27

431 Stable isotope composition of feathers help track the migratory patterns of Sharp-shinned Hawks (Accipiter striatus) along Western Flyways of North America

Wommack, E.; Marrack, L.; Mambelli, S.; Hull, J.; Dawson, T.

10.1101/856278 — zoology — Posted on 2019-11-26

432 Relationship between maximal incremental and high-intensity interval exercise performance in elite athletes

Chang, S.-C.; Adami, A.; Lin, H.-C.; Lin, Y.-C.; Chen, C. P. C.; Fu, T.-C.; Hsu, C.-C.; Huang, S.-C.

10.1101/856237 — physiology — Posted on 2019-11-26

433 Effectiveness of micromorphy against drilling predation: Insights from early Miocene faunal assemblage of Quilon limestone, India

Chattopadhyay, D.; Venu gopal, K. S.; Chattopadhyay, D.

10.1101/856260 — paleontology — Posted on 2019-11-26

434 Predictive factors for the development of peritumoral brain edema after LINAC-based radiation treatment in patients with intracranial meningioma

Lee, R.-H.; Kim, J. M.; Cheong, J. H.; Ryu, J. I.; Kim, Y. S.; Han, M.-H.

10.1101/856211 — neuroscience — Posted on 2019-11-26

435 Modeling time-varying brain networks with a self-tuning optimized Kalman filter

Pascucci, D.; Rubega, M.; Plomp, G.

10.1101/856179 — neuroscience — Posted on 2019-11-26

436 Intravenous indocyanine green dye is insufficient for robust immune cell labelling in the human retina

Bell, O. H.; Carreno, E.; Williams, E. L.; Wu, J.; Copland, D. A.; Bora, M.; Kobayter, L.; Fruttiger, M.; Sim, D. A.; Lee, R. W.; Dick, A. D.; Chu, C. J.

10.1101/856203 — immunology — Posted on 2019-11-26

437 Feeding behavior and activity of Phlebotomus pedifer and potential reservoir hosts of Leishmania aethiopica in southwestern Ethiopia.

Pareyn, M.; Kochora, A.; Van Rooy, L.; Eligo, N.; Vanden Broecke, B.; Girma, N.; Merdekios, B.; Wegayehu, T.; Maes, L.; Caljon, G.; Lindtjorn, B.; Leirs, H.; Massebo, F.

10.1101/856187 — ecology — Posted on 2019-11-26

438 Plant Bioindicators of Pollution in Sadat City, Western Nile Delta, Egypt

Azzazy, M. F.; Azzazy, M. F.

10.1101/856229 — ecology — Posted on 2019-11-26

439 Insulin signal transduction is impaired in the type 2 diabetic retina

Jiang, Y.; Liu, L.; Li, H.; Wang, J.-M.; Steinle, J. J.

10.1101/856245 — cell biology — Posted on 2019-11-26

440 Trends and spatial distribution of animal bites and vaccination status among victims and the animal population, Uganda: A veterinary surveillance system analysis, 2013 - 2017

Monje, F.; Kadobera, D.; Ndumu, D. B.; Bulage, L.; Ario, A.

10.1101/852517 — microbiology — Posted on 2019-11-26

441 Host cholesterol dependent activation of VapC12 toxin enriches persister population during Mycobacterium tuberculosis infection

Pandey, A. K.; Talwar, S.; Pandey, M.; Sharma, C.; Kutum, R.; Lum, J.; Carbajo, D.; Poidinger, M.; Goel, R.; Dash, D.; Singhal, A.

10.1101/856286 — microbiology — Posted on 2019-11-26

442 A field experiment to assess passage of juvenile salmonids across beaver dams during low flow conditions in a tributary to the Klamath River, California, USA.

Pollock, M.; Witmore, S.; Yokel, E.

10.1101/856252 — ecology — Posted on 2019-11-26

443 Chronic loss of STAG2 leads to altered chromatin structure contributing to de-regulated transcription in AML

Smitth, J. S.; Craig, S. G.; Liberante, F. G.; Lappin, K. M.; Crean, C. M.; McDade, S. S.; Thompson, A.; Mills, K.; Savage, K. I.

10.1101/856195 — cancer biology — Posted on 2019-11-26

444 Pyocin S5 import into Pseudomonas aeruginosa reveals a generic mode of bacteriocin transport

Behrens, H. M.; Lowe, E.; Gault, J.; Housden, N. G.; Kaminska, R.; Weber, T. M.; Thompson, C. M. A.; Mislin, G. L. A.; Schalk, I.; Walker, D.; Robinson, C. V.; Kleanthous, C.

10.1101/856047 — biochemistry — Posted on 2019-11-26

445 Using deep mutational scanning data to benchmark computational phenotype predictors and identify pathogenic missense mutations

Livesey, B. J.; Marsh, J. A.

10.1101/855957 — bioinformatics — Posted on 2019-11-26

446 Multiplexing rhythmic information by spike timing dependent plasticity

Sherf, N.; Shamir, M.

10.1101/855965 — biophysics — Posted on 2019-11-26

447 Sensitivity of Listeria monocytogenes to lysozyme predicts ability to proliferate in bovine caruncular epithelial cells

Blanchard, A. M.; Billenness, R.; Warren, J.; Glanville, A.; Roden, W.; Drinkall, E.; Maboni, G.; Robinson, R. S.; Rees, C. E. D.; Pfarrer, C.; Totemeyer, S.

10.1101/855841 — microbiology — Posted on 2019-11-26

448 Mechano-calcium and mechano-electric feedbacks in the human cardiomyocyte analyzed in a mathematical model

Balakina-Vikulova, N. A.; Panfilov, A.; Solovyova, O.; Katsnelson, L. B.

10.1101/855890 — biophysics — Posted on 2019-11-26

449 Kinesin-2 from C. reinhardtii is an atypically fast and auto-inhibited motor that is activated by heterotrimerization for intraflagellar transport

Sonar, P.; Youyen, W.; Cleetus, A.; Wisanpitayakorn, P.; Mousavi, I. S.; Stepp, W. L.; Hancock, W. O.; Tuezel, E.; Oekten, Z.

10.1101/855940 — biophysics — Posted on 2019-11-26

450 Inoculation with a microbe isolated from the Negev Desert enhances corn growth

Khan, N.; Martínez-Hidalgo, P.; Humm, E.; Maymon, M.; Kaplan, D.; Hirsch, A.

10.1101/855528 — plant biology — Posted on 2019-11-26

451 Disconnect between signalling potency and in vivo efficacy of pharmacokinetically optimised biased glucagon-like peptide-1 receptor agonists

Lucey, M.; Pickford, P.; Minnion, J.; Ungewiss, J.; Schoeneberg, K.; Rutter, G. A.; Bloom, S. R.; Tomas, A.; Jones, B.

10.1101/855874 — pharmacology and toxicology — Posted on 2019-11-26

452 Extracellular electron transfer-dependent anaerobic oxidation of ammonium by anammox bacteria

R. Shaw, D.; Ali, M.; Katuri, K. P.; Gralnick, J. A.; Reimann, J.; Mesman, R.; van Niftrik, L.; Jetten, M. S. M.; Saikaly, P. E.

10.1101/855817 — microbiology — Posted on 2019-11-26

453 Mitochondrial substitution rates estimation for molecular clock analyses in modern birds based on full mitochondrial genomes

Arcones, A.; Ponti, R.; Vieites, D. R.

10.1101/855833 — evolutionary biology — Posted on 2019-11-26

454 Mixture distributions in a stochastic gene expression model with delayed feedback

Bokes, P.; Borri, A.; Palumbo, P.; Singh, A.

10.1101/855783 — systems biology — Posted on 2019-11-26

455 RADA is the main branch migration factor in plant mitochondrial recombination and its defect leads to mtDNA instability and cell cycle arrest

Chevigny, N.; Nadiras, C.; Raynaud, C.; Le Ret, M.; Bichara, M.; Erhardt, M.; Dietrich, A.; Gualberto, J. M.

10.1101/856716 — plant biology — Posted on 2019-11-26

456 Visual Cell Sorting: A High-throughput, Microscope-based Method to Dissect Cellular Heterogeneity

Hasle, N.; Cooke, A.; Srivatsan, S.; Huang, H.; Stephany, J. J.; Krieger, Z.; Jackson, D. L.; Tang, W.; Monnat, R. J.; Trapnell, C.; Hatch, E. M.; Fowler, D.

10.1101/856476 — molecular biology — Posted on 2019-11-26

457 Much more than a clasp: Evolutionary pattern of amplexus diversity in anurans

Carvajal-Castro, J. D.; Lopez-Aguirre, Y.; Ospina-L, A. M.; Santos, J. C.; Rojas, B.; Vargas-Salinas, F.

10.1101/854117 — evolutionary biology — Posted on 2019-11-26

458 Cultural variation in voting patterns reflects the landscape of US genetic diversity: A test of the cultural niche hypothesis.

Hodgson, J. A.

10.1101/856450 — evolutionary biology — Posted on 2019-11-26

459 Combining Hypoxia-Activated Prodrugs and Radiotherapy in silico: Impact of Treatment Scheduling and the Intra-Tumoural Oxygen Landscape

Hamis, S. J.; Kohandel, M.; Dubois, L. J.; Yaromina, A.; Lambin, P.; Powathil, G. G.

10.1101/856443 — cancer biology — Posted on 2019-11-26

460 Can we use it? On the utility of de novo and reference-based assembly of Nanopore data for plant plastome sequencing

Scheunert, A.; Dorfner, M.; Lingl, T.; Oberprieler, C.

10.1101/855981 — evolutionary biology — Posted on 2019-11-26

461 Chemical signals act as the main reproductive barrier between sister and mimetic Heliconius butterflies

Gonzalez Rojas, M. F.; Darragh, K.; Robles, J.; Linares, M.; Schulz, S.; McMillan, O.; Jiggins, C. D.; Pardo-Diaz, G. C.; Salazar, C.

10.1101/856393 — evolutionary biology — Posted on 2019-11-26

462 Quantitative delineation of herpesviruses in bats for use in ecological studies

Sjodin, A. R.; Willig, M. R.; Anthony, S. J.

10.1101/856518 — ecology — Posted on 2019-11-26

463 Attention-related modulation of caudate neurons depends on superior colliculus activity

Herman, J. P.; Arcizet, F.; Krauzlis, R. J.

10.1101/843235 — neuroscience — Posted on 2019-11-26

464 Comparative and population genomics approaches reveal the basis of adaptation to deserts in a small rodent

Tigano, A.; Colella, J. P.; MacManes, M. D.

10.1101/856310 — evolutionary biology — Posted on 2019-11-26

465 Early Inhibition of Retinoic Acid Signaling Rapidly Generates Cardiomyocytes Expressing Ventricular Markers from Human Induced Pluripotent Stem Cells

Machiraju, P.; Huang, J.; Iqbal, F.; Liu, Y.; Wang, X.; Bousman, C.; Greenway, S. C.

10.1101/856575 — cell biology — Posted on 2019-11-26

466 Antimicrobial solid media for screening non-sterile Arabidopsis thaliana seeds

Behrendorff, J. B. Y. H.; Borras-Gas, G.; Pribil, M.

10.1101/852020 — plant biology — Posted on 2019-11-26

467 Choosing between personal values: The Pavlovian substrates of intrinsic preferences

Viviani, R.; Dommes, L.; Bosch, J. E.; Beschoner, P.; Stingl, J. C.; Schnell, T.

10.1101/856294 — neuroscience — Posted on 2019-11-26

468 Suppression of homeostatic gene expression and increased expression of metabolism-related genes are early features of glaucoma in optic nerve head microglia

Tribble, J. R.; Harder, J. M.; Williams, P. A.; John, S. W.

10.1101/856427 — neuroscience — Posted on 2019-11-26

469 Out of the Mediterranean Region: worldwide biogeography of snapdragons and relatives (tribe Antirrhineae, Plantaginaceae)

Gorospe, J. M.; Monjas, D.; Fernandez-Mazuecos, M.

10.1101/855973 — evolutionary biology — Posted on 2019-11-26

470 Chronic cortisol exposure in early development leads to neuroendocrine dysregulation in adulthood

Hartig, E. I.; Zhu, S.; King, B. L.; Coffman, J. A.

10.1101/856633 — developmental biology — Posted on 2019-11-26

471 Kinetochore phosphatases suppress autonomous kinase activity to control the spindle assembly checkpoint

Cordeiro, M. H.; Smith, R. J.; Saurin, A. T.

10.1101/856773 — cell biology — Posted on 2019-11-26

472 ACTOR: a latent Dirichlet model to compare expressed isoform proportions to a reference panel

McCabe, S. D.; Nobel, A. B.; Love, M. I.

10.1101/856401 — bioinformatics — Posted on 2019-11-26

473 Mildew Locus O facilitates colonization by arbuscular mycorrhiza in angiosperms

Jacott, C. N.; Charpentier, M.; Murray, J. D.; Ridout, C. J.

10.1101/851840 — plant biology — Posted on 2019-11-26

474 The effect of experimental lead pollution on DNA methylation in a wild bird population

Makinen, H.; van Oers, K.; Eeva, T.; Laine, V. N.; Ruuskanen, S.

10.1101/851998 — molecular biology — Posted on 2019-11-26

475 Cross-regulation of viral kinases with cyclin A secures shutoff of host DNA synthesis

Bogdanow, B.; Schmidt, M.; Weisbach, H.; Gruska, I.; Vetter, B.; Imami, K.; Ostermann, E.; Brune, W.; Selbach, M.; Hagemeier, C.; Wiebusch, L.

10.1101/856435 — microbiology — Posted on 2019-11-26

476 Combining SIMS and mechanistic modelling to reveal nutrient kinetics in an algal-bacterial mutualism

Laeverenz Schlogelhofer, H.; Peaudecerf, F. J.; Bunbury, F.; Whitehouse, M. J.; Foster, R. A.; Smith, A. G.; Croze, O. A.

10.1101/855999 — microbiology — Posted on 2019-11-26

477 Putative conjugative plasmids with tcdB and cdtAB genes in clinical Clostridium difficile strains 2 from MLST clades C-I, 2 and 4

Ramirez-Vargas, G.; Rodriguez, C.

10.1101/852418 — microbiology — Posted on 2019-11-26

478 RepeatModeler2: automated genomic discovery of transposable element families

Flynn, J. M.; Hubley, R.; Goubert, C.; Rosen, J.; Clark, A. G.; Feschotte, C.; Smit, A. F. A.

10.1101/856591 — genomics — Posted on 2019-11-26

479 Primate-restricted KRAB zinc finger proteins and target retrotransposons control gene expression in human neurons

Trono, D.; Turelli, P.; Playfoot, C.; Grun, D.; Raclot, C.; Pontis, J.; Coudray, A.; Thorball, C.; Duc, J.; Pankevich, E. V.; Deplancke, B.; Busskamp, V.

10.1101/856005 — evolutionary biology — Posted on 2019-11-26

480 Temperature-related biodiversity change across temperate marine and terrestrial systems

Antao, L. H.; Bates, A. E.; Blowes, S. A.; Waldock, C.; Supp, S. R.; Magurran, A. E.; Dornelas, M.; Schipper, A. M.

10.1101/841833 — ecology — Posted on 2019-11-26

481 Big data reveals deep associations in physical examination indicators and can help predict overall underlying health status

Wang, H.; Shuai, P.; Deng, Y.; Yang, J.; Zhang, S.; Yin, Y.; Wang, L.; Li, D.; Yong, T.; Liu, Y.; Huang, L.

10.1101/855809 — pathology — Posted on 2019-11-26

482 All talk? Left temporal alpha oscillations are not specific to verbal-analytical processing during conscious motor control

Parr, J. V. V.; Gallicchio, G.; Harrison, N.; Johnen, A.-K.; Wood, G.

10.1101/851956 — neuroscience — Posted on 2019-11-26

483 α-Synuclein-induced Kv4 channelopathy in mouse vagal motoneurons causes non-motor parkinsonian symptoms

Chiu, W.-H.; Kovacheva, L.; Musgrove, R. E.; Arien-Zakay, H.; Koprich, J. B.; Brotchie, J. M.; Yaka, R.; Ben-Zvi, D.; Hanani, M.; Roeper, J.; Goldberg, J. A.

10.1101/856070 — neuroscience — Posted on 2019-11-26

484 Temporal Dynamics of the Neural Representation of Social Relationships

Dziura, S. L.; Thompson, J. C.

10.1101/856484 — neuroscience — Posted on 2019-11-26

485 Lysates of Methylococcus capsulatus Bath induce a lean-like microbiota, intestinal FoxP3+RORγt+IL-17+ Tregs and improve metabolism

Jensen, B. A. H.; Holm, J. B.; Larsen, I. S.; Burg, N. v.; Derer, S.; Rivollier, A.; Agrinier, A. L.; Sulek, K.; Indrelid, S. A.; Arnoldussen, Y. J.; Sonne, S. B.; Fjaere, E.; Damgaard, M. T. F.; Paerregaard, S. I.; Angell, I. L.; Rudi, K.; Marette, A.; Treebak, J. T.; Madsen, L.; Aakesson, C. P.; Agace, W. W.; Sina, C.; Kleiveland, C.; Kristiansen, K.; Lea, T.

10.1101/855486 — immunology — Posted on 2019-11-26

486 Transcriptional regulatory network controlling the ontogeny of hematopoietic stem cells

Gao, P.; Chen, C.; Howell, E. D.; Li, Y.; Tober, J.; Uzun, Y.; He, B.; Gao, L.; Zhu, Q.; Siekmann, A.; Speck, N. A.; Tan, K.

10.1101/856559 — developmental biology — Posted on 2019-11-26

487 3DGV: Immersive Exploration of 3D Genome Structures using Virtual Reality

Zhang, E.; Drogaris, C.; Guedon, A.; Sossin, A.; Faraj, R.; Chen, H.; Cyr, Y.; Majewski, J.; Blanchette, M. D.; Waldispühl, J.

10.1101/855379 — bioinformatics — Posted on 2019-11-26

488 STing: accurate and ultrafast genomic profiling with exact sequence matches

Espitia-Navarro, H. F.; Chande, A. T.; Nagar, S. D.; Smith, H.; Jordan, I. K.; Rishishwar, L.

10.1101/855478 — bioinformatics — Posted on 2019-11-26

489 An Escherichia coli Chassis for Production of Electrically Conductive Protein Nanowires

Ueki, T.; Walker, D. J.; Woodard, T. L.; Nevin, K. P.; Nonnenmann, S. S.; Lovley, D. R.

10.1101/856302 — synthetic biology — Posted on 2019-11-26

490 Covariate-Profile Similarity Weighting and Bagging Studies with the Study Strap: Multi-Study Learning for Human Neurochemical Sensing

Loewinger, G. C.; Kishida, K. K.; Patil, P.; Parmigiani, G.

10.1101/856385 — neuroscience — Posted on 2019-11-26

491 Tensor Image Registration Library: Automated Non-Linear Registration of Sparsely Sampled Histological Specimens to Post-Mortem MRI of the Whole Human Brain

Huszar, I. N.; Pallebage-Gamarallage, M.; Foxley, S.; Tendler, B. C.; Leonte, A.; Hiemstra, M.; Mollink, J.; Smart, A.; Bangerter-Christensen, S.; Brooks, H.; Turner, M. R.; Ansorge, O.; Miller, K. L.; Jenkinson, M.

10.1101/849570 — neuroscience — Posted on 2019-11-26

492 An accurate molecular method to sex elephants using PCR amplification of Amelogenin gene

Lohay, G. G.

10.1101/856419 — genetics — Posted on 2019-11-26

493 Sort-purification of human CD34+CD90+ cells reduces target cell population and improves lentiviral transduction

Radtke, S.; Pande, D.; Cui, M.; Perez, A. M.; Chan, Y.-Y.; Enstrom, M.; Schmuck, S.; Berger, A.; Eunson, T.; Adair, J. E.; Kiem, H.-P.

10.1101/850479 — cell biology — Posted on 2019-11-26

494 Understanding the paradoxical mechanical response of in-phase A-tracts at different force regimes

Marin-Gonzalez, A.; Pastrana, C. L.; Bocanegra, R.; Martin-Gonzalez, A.; Vilhena, J. G.; Perez, R.; Ibarra, B.; Aicart-Ramos, C.; Moreno-Herrero, F.

10.1101/854968 — biophysics — Posted on 2019-11-26

495 Dose and duration of IFNγ pre-licensing interact with donor characteristics to influence the expression and function of IDO in MSCs

Boyt, D.; Boland, L. K.; Burand, A. J.; Brown, A. J.; Ankrum, J. A.

10.1101/855270 — bioengineering — Posted on 2019-11-26

496 Successful mating and hybridisation in two closely related flatworm species despite significant differences in reproductive morphology and behaviour

Singh, P.; Ballmer, D.; Laubscher, M.; Schärer, L.

10.1101/851972 — animal behavior and cognition — Posted on 2019-11-26

497 Refining the transcriptome of the human malaria parasite Plasmodium falciparum using amplification-free RNA-seq

Chappell, L.; Ross, P.; Orchard, L.; Otto, T. D.; Berriman, M.; Rayner, J. C.; Llinas, M.

10.1101/852038 — genomics — Posted on 2019-11-26

498 Independence of HIF1a and androgen signaling pathways in prostate cancer

Tran, M. G.; Bibby, B. A.; Yang, L.; Lo, F.; Warren, A.; Shukla, D.; Osborne, M.; Hadfield, J.; Carroll, T.; Stark, R.; Scott, H.; Ramos-Montoya, A.; Massie, C.; Maxwell, P.; West, C. M.; Mills, I.; Neal, D.

10.1101/848424 — cancer biology — Posted on 2019-11-26

499 Constricted migration contributes to persistent 3D genome structure changes associated with an invasive phenotype in melanoma cells

Golloshi, R.; San Martin, R.; Das, P.; Raines, T. I.; Thurston, D. M.; Freeman, T. F.; McCord, R. P.

10.1101/856583 — systems biology — Posted on 2019-11-26

500 Identification, characterization, and application of a highly sensitive lactam biosensor from Pseudomonas putida

Thompson, M. G.; Pearson, A. N.; Barajas, J. F.; Cruz-Morales, P.; Sedaghatian, N.; Costello, Z.; Garber, M. E.; Incha, M. R.; Valencia, L. E.; Baidoo, E.; Martin, H. G.; Mukhopadhyay, A.; Keasling, J. D.

10.1101/700484 — synthetic biology — Posted on 2019-11-26

501 Functional Architecture of Motion Direction in the Mouse Superior Colliculus

Li, Y.; Turan, Z.; Meister, M.

10.1101/825711 — neuroscience — Posted on 2019-11-26

502 Escort-like somatic cells mediate early mouse fetal ovarian development but surface-derived Lgr5+ cells support primordial follicles

Niu, W.; Spradling, A. C.

10.1101/855346 — developmental biology — Posted on 2019-11-26

503 The heading direction circuit of two insect species

Pisokas, I.; Heinze, S.; Webb, B.

10.1101/854521 — neuroscience — Posted on 2019-11-26

504 Osmotic stress-induced, rapid clustering of IGF2BP proteins nucleates stress granule assembly

Zeng, W.-J.; Lu, C.; Shi, Y.; Chen, X.; Yao, J.

10.1101/846659 — cell biology — Posted on 2019-11-26

505 De novo mutations involved in post-transcriptional dysregulation contribute to four neuropsychiatric disorders

Mao, F.; Wang, L.; Zhao, X.; Li, Z.; Xiao, L.; Rao, R. C.; Li, J.; Teng, H.; He, X.; Sun, Z. S.

10.1101/175844 — genomics — Posted on 2019-11-26

506 Independent evolution of lateral inhibition mechanisms in different lineages of land plants: MpFEW RHIZOIDS1 miRNA-mediated lateral inhibition controls rhizoid cell patterning in Marchantia polymorpha

Thamm, A.; Saunders, T. E.; Dolan, L.

10.1101/854869 — developmental biology — Posted on 2019-11-26

507 Neutrophil swarming in damaged tissue is orchestrated by connexin-dependent calcium signals

Poplimont, H.; Georgantzoglou, A.; Boulch, M.; Coombs, C.; Papaleonidopoulou, F.; Sarris, M.

10.1101/853093 — cell biology — Posted on 2019-11-26

508 GraphProt2: A novel deep learning-based method for predicting binding sites of RNA-binding proteins

Uhl, M.; Tran, D. V.; Heyl, F.; Backofen, R.

10.1101/850024 — bioinformatics — Posted on 2019-11-26

509 Protein structure featurization via standard image classification neural networks

Sikosek, T.

10.1101/841783 — bioinformatics — Posted on 2019-11-26

510 Standardizing Human Brain Parcellations

Myers, P. E.; Arvapalli, G. C.; Ramachandran, S. C.; Pisner, D. A.; Frank, P. F.; Lemmer, A. D.; Bridgeford, E. W.; Nikolaidis, A.; Vogelstein, J. T.

10.1101/845065 — neuroscience — Posted on 2019-11-26

511 Nick-seq for single-nucleotide resolution genomic maps of DNA modifications and damage

Cao, B.; Wu, X.; Zhou, J.; Wu, H.; DeMott, M. S.; Gu, C.; Wang, L.; You, D.; Dedon, P. C.

10.1101/845768 — molecular biology — Posted on 2019-11-26

512 Programmable CRISPR interference for gene silencing using Cas13a in mosquitoes

Kulkarni, A.; Yu, W.; Moon, A. S.; Pandey, A.; Hanley, K. A.; Xu, J.

10.1101/846055 — molecular biology — Posted on 2019-11-26

513 Spexin and a novel cichlid-specific spexin paralog both inhibit FSH and LH through a specific galanin receptor (Galr2b) in tilapia

Cohen, Y.; Hausken, K.; Bonfil, Y.; Gutnick, M.; Levavi-Sivan, B.

10.1101/853622 — molecular biology — Posted on 2019-11-26

514 Functional channels in mature E. coli colonies

Rooney, L. M.; Amos, W. B.; Hoskisson, P. A.; McConnell, G.

10.1101/851428 — microbiology — Posted on 2019-11-26

515 Sox2 and Sox3 are essential for development and regeneration of the zebrafish lateral line

Undurraga, C. A.; Gou, Y.; Sandoval, P. C.; Nunez, V. A.; Allende, M. L.; Riley, B. B.; Hernandez, P. P.; Sarrazin, A. F.

10.1101/856088 — developmental biology — Posted on 2019-11-26

516 Adult chondrogenesis and spontaneous cartilage repair in the skate, Leucoraja erinacea

Marconi, A.; Hancock-Ronemus, A.; Gillis, A.

10.1101/856120 — developmental biology — Posted on 2019-11-26

517 CHROMATIX: computing the functional landscape of many-body chromatin interactions in transcriptionally active loci from deconvolved single-cells

Perez-Rathke, A.; Sun, Q.; Wang, B.; Boeva, V.; Shao, Z.; Liang, J.

10.1101/854190 — bioinformatics — Posted on 2019-11-26

518 GFP fusion protein with embedded foreign peptide

Glukhova, K. A.; Klyashtorny, V. G.; Melnik, B. S.

10.1101/855908 — bioengineering — Posted on 2019-11-26

519 Combining electrophysiology with MRI enhances learning of surrogate-biomarkers

Engemann, D. A.; Kozynets, O.; Sabbagh, D.; Lemaitre, G.; Varoquaux, G.; Liem, F.; Gramfort, A.

10.1101/856336 — neuroscience — Posted on 2019-11-26

520 Sequencing-based quantitative mapping of the cellular small RNA landscape

Hu, J. F.; Yim, D.; Huber, S. M.; Bacusmo, J. M.; Ma, D.; DeMott, M. S.; Levine, S. S.; Crecy-Lagard, V. d.; Dedon, P. C.; Cao, B.

10.1101/841130 — molecular biology — Posted on 2019-11-26

521 Environmental variables determining the presence of an avian parasite: the case of the Philornis torquans complex (Diptera: Muscidae) in South America

Cuervo, P. F.; Percara, A.; Monje, L.; Beldomenico, P. M.; Quiroga, M. A.

10.1101/839589 — ecology — Posted on 2019-11-26

522 Transversal otolithic membrane deflections evoked by the linear accelerations

Goussev, V.

10.1101/844977 — biophysics — Posted on 2019-11-26

523 Electrode pooling: How to boost the yield of switchable silicon probes for neuronal recordings

Lee, K. H.; Ni, Y.-L.; Meister, M.

10.1101/851691 — neuroscience — Posted on 2019-11-26

524 Neuro-functional correlates of protective effects of wheel-running exercise against cocaine locomotor sensitization in mice: a fallypride microPET study

Becker, G.; Lespine, L.-F.; Bahri, M. A.; Serrano, M. E.; Lemaire, C.; Luxen, A.; Tirelli, E.; Plenevaux, A.

10.1101/855791 — neuroscience — Posted on 2019-11-26

525 Selective attention to sound features mediates cross-modal activation of visual cortices

Retsa, C.; Matusz, P. J.; Schnupp, J. W. H.; Murray, M. M.

10.1101/855882 — neuroscience — Posted on 2019-11-26

526 Stable isotope composition of feathers help track the migratory patterns of Sharp-shinned Hawks (Accipiter striatus) along Western Flyways of North America

Wommack, E.; Marrack, L.; Mambelli, S.; Hull, J.; Dawson, T.

10.1101/856278 — zoology — Posted on 2019-11-26

527 Wounding and insect feeding trigger two independent MAPK pathways with distinct regulation and kinetics

Sözen, C.; Schenk, S. T.; Boudsocq, M.; Chardin, C.; Almeida-Trapp, M.; Krapp, A.; Hirt, H.; Mithöfer, A.; Colcombet, J.

10.1101/855098 — plant biology — Posted on 2019-11-26

528 Description of Corynebacterium rouxii sp. nov., a novel member of the diphtheriae species complex

Badell, E.; Hennart, M.; Rodrigues, C.; Passet, V.; Dazas, M.; Panunzi, L.; Bouchez, V.; Carmi-Leroy, A.; Toubiana, J.; Brisse, S.

10.1101/855692 — microbiology — Posted on 2019-11-26

529 Tissue-specific expression of young small-scale duplications in human central nervous systemregions

Brohard-Julien, S.; Frouin, V.; Meyer, V.; Chalabi, S.; Deleuze, J.-F.; Le Floch, E.; Battail, C.

10.1101/821256 — genomics — Posted on 2019-11-26

530 Heat production in carrion biofilm formed by communally breeding carrion beetles

Matuszewski, S.; Madra-Bielewicz, A.

10.1101/854349 — ecology — Posted on 2019-11-26

531 Expansion of a subset within C2 clade of Escherichia coli sequence type 131 (ST131) is driving the increasing rates of Aminoglycoside resistance: a molecular epidemiology report from Iran

Hojabri, Z.; Darabi, N.; Mirmohammadkhani, M.; Hemmati, R.; Saeedi, Z.; Roustaee, K.; Pajand, O.

10.1101/855700 — microbiology — Posted on 2019-11-26

532 Tissue- and population-level microbiome analysis of the wasp spider Argiope bruennichi identifies a novel dominant bacterial symbiont

Sheffer, M. M.; Uhl, G.; Prost, S.; Urich, T.; Lueders, T.; Bengtsson, M. M.

10.1101/822437 — microbiology — Posted on 2019-11-26

533 Direct synthesis of self-organized blastocyst-like cysts derived from human pluripotent stem cells

Wen, X.; Terada, S.; Yoshimoto, K.; Kamei, K.-i.

10.1101/831487 — bioengineering — Posted on 2019-11-26

534 Local drug delivery to the entire cochlea without breaching its boundaries

Lukashkin, A. N.; Sadreev, I. I.; Zakharova, N.; Russell, I. J.; Yarin, Y. M.

10.1101/838508 — neuroscience — Posted on 2019-11-26

535 Ultrastructure of light-activated axons following optogenetic stimulation to produce late-phase long-term potentiation

Kuwajima, M.; Ostrovskaya, O. I.; Cao, G.; Weisberg, S. A.; Harris, K. M.; Zemelman, B. V.

10.1101/799890 — neuroscience — Posted on 2019-11-26

536 Single-cell tumor phylogeny inference with copy-number constrained mutation losses

Satas, G.; Zaccaria, S.; Mon, G.; Raphael, B. J.

10.1101/840355 — genomics — Posted on 2019-11-26

537 Small-scale spatial structure influences large-scale invasion rates

Plank, M. J.; Simpson, M. J.; Binny, R. N.

10.1101/814582 — cell biology — Posted on 2019-11-26

538 Podoplanin function is switched by partner proteins on fibroblastic reticular cells

de Winde, C. M.; Makris, S.; Millward, L.; Benjamin, A. C.; Cazzagon, G.; Martinez, V. G.; Acton, S. E.

10.1101/793141 — cell biology — Posted on 2019-11-26

539 FICD activity and AMPylation remodelling modulate human neurogenesis.

Kielkowski, P.; Buchsbaum, I. Y.; Kirsch, V. C.; Bach, N. C.; Cappello, S.; Drukker, M.; Sieber, S. A.

10.1101/787929 — biochemistry — Posted on 2019-11-26

540 Claudin-12 deficiency causes nerve barrier breakdown, mechanical hypersensitivity and painful neuropathy

Chen, J. T.-C.; Hu, X.; Doppler, K.; Breitkreuz-Korff, O.; Otto, I. U.; Schwabe, J.; Reinhold, A.-K.; Guenzel, D.; Dithmer, S.; Hankir, M. K.; Fallier-Becker, P.; Winkler, L.; Blasig, R.; Sommer, C.; Brack, A.; Blasig, I. E.; Rittner, H.

10.1101/768267 — neuroscience — Posted on 2019-11-26

541 Maternal glucocorticoids promote offspring growth without inducing oxidative stress or shortening telomeres in wild red squirrels

Dantzer, B.; van Kesteren, F.; Westrick, S. E.; Boutin, S.; McAdam, A. G.; Lane, J. E.; Gillespie, R.; Majer, A.; Haussmann, M.; Monaghan, P.

10.1101/680421 — evolutionary biology — Posted on 2019-11-26

542 When does a minor outbreak become a major epidemic? Linking the risk from invading pathogens to practical definitions of a major epidemic

Thompson, R.; Gilligan, C.; Cunniffe, N.

10.1101/768853 — ecology — Posted on 2019-11-26

543 Melanoma-secreted Amyloid Beta Supresses Neuroinflammation and Promotes Brain Metastasis

Kleffman, K.; Levinson, G.; Wong, E.; Galan-Echevarria, F.; Von-Itter, R.; Rose, I.; Blumenberg, L.; Floristan, A.; Tranos, J.; Argibay, D.; Chen, J.; Dhabaria, A.; de Miera Sainz de Vega, E.; Rogers, R.; Zaim-Wadghiri, Y.; Mathews, P.; Osman, I.; Ruggles, K.; Ueberheide, B.; Liddelow, S. A.; DeMattos, R.; Li, Y. M.; Schneider, R.; Hernando, E.

10.1101/854885 — cancer biology — Posted on 2019-11-26

544 Optimising Renewal Models for Real-Time Epidemic Prediction and Estimation

Parag, K. V.; Donnelly, C. A.

10.1101/835181 — bioinformatics — Posted on 2019-11-26

545 The Beacon Calculus: A formal method for the flexible and concise modelling of biological systems

Boemo, M. A.; Cardelli, L.; Nieduszynski, C. A.

10.1101/579029 — systems biology — Posted on 2019-11-26

546 Atypical Structural Tendencies Among Low-Complexity Domains in the Protein Data Bank Proteome

Cascarina, S. M.; Elder, M. R.; Ross, E. D.

10.1101/807438 — bioinformatics — Posted on 2019-11-26

547 Reorienting Spatial Attention within Visual Working Memory

Han, S.; Ku, Y.

10.1101/854703 — neuroscience — Posted on 2019-11-26

548 Apparent increase in lip size is linked to tactile discrimination improvement

Ambron, E.; Coslett, B.

10.1101/855296 — neuroscience — Posted on 2019-11-26

549 Global Effects of Feature-based Attention Depend on Surprise

Smout, C. A.; Garrido, M. I.; Mattingley, J. B.

10.1101/747204 — neuroscience — Posted on 2019-11-26

550 Dynamic perceptual feature selectivity in primary somatosensory cortex upon reversal learning

Chereau, R.; Bawa, T.; Fodoulian, L.; Carleton, A.; Pages, S.; Holtmaat, A.

10.1101/782847 — neuroscience — Posted on 2019-11-26

551 DREAM Interrupted: Severing MuvB from DREAM's pocket protein in Caenorhabditis elegans impairs gene repression but not DREAM chromatin assembly

Goetsch, P. D.; Strome, S.

10.1101/671024 — molecular biology — Posted on 2019-11-26

552 Presence of orange tubercles does not always indicate accelerated low water corrosion

Phan, H. C.; Wade, S. A.; Blackall, L.

10.1101/855676 — microbiology — Posted on 2019-11-26

553 Jointly inferring the dynamics of population size and sampling intensity from molecular sequences

Parag, K. V.; du Plessis, L.; Pybus, O. G.

10.1101/686378 — genetics — Posted on 2019-11-26

554 AGTR1 is overexpressed in neuroendocrine neoplasms, regulates secretion and may serve as a target for molecular imaging and therapy

Exner, S.; Schuldt, C.; Sachindra, S.; Du, J.; Heing-Becker, I.; Licha, K.; Wiedenmann, B.; Groetzinger, C.

10.1101/853788 — cancer biology — Posted on 2019-11-26

555 PheGWAS: A new dimension to visualize GWAS across multiple phenotypes

George, G.; Gan, S.; Huang, Y.; Appleby, P.; Nar, A.; Venkatesan, R.; Mohan, V.; Palmer, C. N. A.; Doney, A. S. F.; on behalf of the INSPIRED collaboration,

10.1101/694794 — bioinformatics — Posted on 2019-11-26

556 Gsalpha stimulation of mammalian adenylate cyclases regulated by their hexahelical membrane anchors

Seth, A.; Finkbeiner, M.; Grischin, J.; Schutz, J. E.

10.1101/694877 — biochemistry — Posted on 2019-11-26

557 Intestinal dysbiosis in carbapenem-resistant Enterobacteriaceae carriers

Korach-Rechtman, H.; Hreish, M.; Fried, C.; Gerassy-Vainberg, S.; Azzam, Z. S.; Kashi, Y.; Berger, G.

10.1101/855718 — microbiology — Posted on 2019-11-26

558 Gene networks and expression quantitative trait loci associated with platinum-based chemotherapy response in high-grade serous ovarian cancer

Choi, J.; Tarnouskaya, A.; Nesdoly, S.; Topouza, D. G.; Koti, M.; Duan, Q.

10.1101/740696 — cancer biology — Posted on 2019-11-26

559 Metabolite sequestration enables rapid recovery from nutrient depletion

Hartline, C. J.; Mannan, A. A.; Liu, D.; Zhang, F.; Oyarzun, D. A.

10.1101/590943 — systems biology — Posted on 2019-11-26

560 Maturation and interhemispheric asymmetry in neurite density and orientation dispersion in early childhood

Dimond, D.; Heo, S.; Ip, A.; Rohr, C. S.; Tannsey, R.; Graff, K.; Dhollander, T.; Smith, R. E.; Lebel, C.; Dewey, D.; Connelly, A.; Bray, S.

10.1101/852764 — neuroscience — Posted on 2019-11-26

561 Drosophila models of pathogenic copy-number variant genes show global and non-neuronal defects during development

Yusuff, T.; Jensen, M.; Yennawar, S.; Pizzo, L.; Karthikeyan, S.; Gould, D. J.; Sarker, A.; Matsui, Y.; Iyer, J.; Lai, Z.-C.; Girirajan, S.

10.1101/855338 — genomics — Posted on 2019-11-26

562 Hypoxia increases the tempo of evolution in glioblastoma

Grimes, D. R.; Jansen, M.; Macauley, R. J.; Scott, J.; Basanta, D.

10.1101/293712 — cancer biology — Posted on 2019-11-26

563 A fully phased accurate assembly of an individual human genome

Porubsky, D.; Ebert, P.; Audano, P. A.; Vollger, M. R.; Harvey, W. T.; Munson, K. M.; Sorensen, M.; Sulovari, A.; Haukness, M.; Ghareghani, M.; Human Genome Structural Variation Consortium, ; Lansdorp, P. M.; Paten, B.; Devine, S. E.; Sanders, A. D.; Lee, C.; Chaisson, M. J. P.; Korbel, J. O.; Eichler, E. E.; Marschall, T.

10.1101/855049 — bioinformatics — Posted on 2019-11-26

564 Differential Effects of 'Resurrecting' Cap Pseudoproteases during Clostridioides difficile Spore Germination

Donnelly, M. L.; Forster, E. R.; Rohlfing, A. E.; Shen, A.

10.1101/855569 — biochemistry — Posted on 2019-11-26

565 Implementation of Bayesian Multiple Comparison Correction in the Second-Level Analysis of fMRI Data: With Pilot Analyses of Simulation and Real fMRI Datasets Based on Voxelwise Inference

Han, H.

10.1101/855460 — neuroscience — Posted on 2019-11-26

566 De novo mutations involved in post-transcriptional dysregulation contribute to four neuropsychiatric disorders

Mao, F.; Wang, L.; Zhao, X.; Li, Z.; Xiao, L.; Rao, R. C.; Li, J.; Teng, H.; He, X.; Sun, Z.

10.1101/175844 — genomics — Posted on 2019-11-26

567 An animal society based on kin competition, not kin cooperation

Vickruck, J. L.; Richards, M.

10.1101/854802 — evolutionary biology — Posted on 2019-11-26

568 The impact of global selection on local adaptation and reproductive isolation.

Bisschop, G.; Setter, D.; Rafajlovic, M.; Baird, S. J.; Lohse, K.

10.1101/855320 — evolutionary biology — Posted on 2019-11-26

569 Directionality and community-level selection

Bunin, G.

10.1101/484576 — ecology — Posted on 2019-11-26

570 Genome editing to model and reverse a prevalent mutation associated with myeloproliferative neoplasms

Baik, R.; Wyman, S. K.; Kabir, S.; Corn, J. E.

10.1101/855452 — cancer biology — Posted on 2019-11-26

571 The metastable human brain associated with autistic-like traits

Sase, T.; Kitajo, K.

10.1101/855502 — neuroscience — Posted on 2019-11-26

572 Quantifying uncertainty in brain-predicted age using scalar-on-image quantile regression

Palma, M.; Tavakoli, S.; Brettschneider, J.; Nichols, T. E.; for the Alzheimer's Disease Neuroimaging Initiative,

10.1101/853341 — neuroscience — Posted on 2019-11-26

573 Effect of sinusoidal electrical cortical stimulation on brain cells

ryu, s.; Kim, K.-T.; Seo, H.; Cho, J.; Park, J.; Jun, S. C.; Kim, H.-I.

10.1101/855395 — neuroscience — Posted on 2019-11-26

574 Emergence of a novel Salmonella enterica serotype Reading clone is linked to its expansion in commercial turkey production, resulting in unanticipated human illness in North America

Miller, E. A.; Elnekave, E.; Flores-Figueroa, C.; Johnson, A.; Kearney, A.; Munoz-Aguayo, J.; Tagg, K. A.; Tschetter, L.; Weber, B.; Nadon, C.; Boxrud, D.; Singer, R. S.; Folster, J. P.; Johnson, T. J.

10.1101/855734 — microbiology — Posted on 2019-11-26

575 Host cholesterol dependent activation of VapC12 toxin enriches persister population during Mycobacterium tuberculosis infection

Pandey, A. K.; Talwar, S.; Pandey, M.; Sharma, C.; Kutum, R.; Lum, J.; Carbajo, D.; Poidinger, M.; Goel, R.; Dash, D.; Singhal, A.

10.1101/856286 — microbiology — Posted on 2019-11-26

576 Inferring parameters of the distribution of fitness effects of new mutations when beneficial mutations are strongly advantageous and rare

Booker, T. R.

10.1101/855411 — evolutionary biology — Posted on 2019-11-26

577 Wolbachia promote successful sex with siblings

Bagheri, Z.; Talebi, A. A.; Asgari, S.; Mehrabadi, M.

10.1101/855635 — evolutionary biology — Posted on 2019-11-26

578 Neuronal upregulation of Prospero protein is driven by alternative mRNA polyadenylation and Syncrip-mediated mRNA stabilisation

Samuels, T. J.; Arava, Y.; Järvelin, A. I.; Robertson, F.; Lee, J. Y.; Yang, L.; Yang, C.-P.; Lee, T.; Ish-Horowicz, D.; Davis, I.

10.1101/135848 — developmental biology — Posted on 2019-11-26

579 clustifyr: An R package for automated single-cell RNA sequencing cluster classification

Fu, R.; Gillen, A. E.; Sheridan, R. M.; Tian, C.; Daya, M.; Hao, Y.; Hesselberth, J. R.; Riemondy, K. A.

10.1101/855064 — bioinformatics — Posted on 2019-11-26

580 VIBRANT: Automated recovery, annotation and curation of microbial viruses, and evaluation of virome function from genomic sequences

Kieft, K.; Zhou, Z.; Anantharaman, K.

10.1101/855387 — bioinformatics — Posted on 2019-11-26

581 RiboFlow, RiboR and RiboPy: An ecosystem for analyzing ribosome profiling data at read length resolution

Ozadam, H.; Geng, M.; Cenik, C.

10.1101/855445 — bioinformatics — Posted on 2019-11-26

582 Delta glutamate receptor conductance drives excitation of dorsal raphe neurons

Gantz, S. C.; Moussawi, K.; Hake, H. S.

10.1101/855353 — neuroscience — Posted on 2019-11-26

583 Sustained modulation of emotion-related fibers after 8 weeks of mindfulness-based stress reduction training

Chen, C.-L.; Shih, Y.-C.; Hsu, Y.-C.; Wen, T.-K.; Fang, S.-C.; Tang, D.-L.; Lee, S.-C.; Tseng, W.-Y. I.

10.1101/855551 — neuroscience — Posted on 2019-11-26

584 Escort-like somatic cells mediate early mouse fetal ovarian development but surface-derived Lgr5+ cells support primordial follicles

Niu, W.; Spradling, A. C.

10.1101/855346 — developmental biology — Posted on 2019-11-26

585 Expanded huntingtin CAG repeats disrupt the balance between neural progenitor expansion and differentiation in human cerebral organoids

Zhang, J.; Ooi, J.; Utami, K. H.; Langley, S. R.; Aning, O. A.; Park, D. S.; Renner, M.; Ma, S.; Cheok, C. F.; Knoblich, J. A.; Ginhoux, F.; Petretto, E. G.; Pouladi, M. A.

10.1101/850586 — developmental biology — Posted on 2019-11-26

586 Unsupervised Machine Learning for Data Encoding appliedto Ovarian Cancer Transcriptomes

George, T. M.; Lio, P.

10.1101/855593 — cancer biology — Posted on 2019-11-26

587 Binary integer programming for Multiple Sequence Alignment

Lajevardy, S. A.; Kargari, M.

10.1101/854786 — bioinformatics — Posted on 2019-11-26

588 The breast cancer oncogene IKKε coordinates mitochondrial function and serine metabolism

Xu, R.; Jones, W.; Wilcz-Villega, E.; Costa, S.; Rajeeve, V.; Bentham, R. B.; Bryson, K.; Nagano, A.; Yaman, B.; Olendo Barasa, S.; Wang, Y.; Chelala, C.; Cutillas, P.; Szabadkai, G.; Frezza, C.; Bianchi, K.

10.1101/855361 — cancer biology — Posted on 2019-11-26

589 Glioblastoma stem cells induce quiescence in surrounding neural stem cells via Notch signalling

Lawlor, K.; Marques-Torrejon, M. A.; Dharmalingham, G.; El-Azhar, Y.; Schneider, M. D.; Pollard, S. M.; Rodriguez, T.

10.1101/856062 — cancer biology — Posted on 2019-11-26

590 BRD4 Prevents R-Loop Formation and Transcription-Replication Conflicts by Ensuring Efficient Transcription Elongation

Edwards, D.; Maganti, R.; Tanksley, J. P.; Park, J. J. H.; Balkanska-Sinclair, E.; Luo, J.; Ling, J.; Floyd, S. R.

10.1101/854737 — cancer biology — Posted on 2019-11-26

591 Sub-2 A Resolution Structure Determination Using Single-Particle Cryo-EM at 200 keV

Wu, M.; Lander, G. C.; Herzik, M. A.

10.1101/855643 — biophysics — Posted on 2019-11-26

592 Cis-regulatory analysis of Onecut1 expression in fate-restricted retinal progenitor cells

Patoori, S.; Jean-Charles, N.; Gopal, A.; Sulaiman, S.; Gopal, S.; Wang, B.; Souferi, B.; Emerson, M.

10.1101/854778 — developmental biology — Posted on 2019-11-26

593 Bax and Bak jointly control survival and dampen the early unfolded protein response in pancreatic β-cells under glucolipotoxic stress

White, S. A.; Zhang, L.; Yang, Y. H.; Luciani, D. S.

10.1101/855239 — cell biology — Posted on 2019-11-26

594 RNA extension drives a stepwise displacement of an initiation-factor structural module in initial transcription

Li, L.; Molodtsov, V.; Lin, W.; Ebright, R. H.; Zhang, Y.

10.1101/855544 — biochemistry — Posted on 2019-11-26

595 dP75 safeguards oogenesis by preventing H3K9me2 spreading

Zhang, Z.; Dou, K.; Liu, Y.; Zhang, Y.; Wang, C.; Huang, Y.

10.1101/856021 — developmental biology — Posted on 2019-11-26

596 High-Resolution 3D Fluorescent Imaging of Intact Tissues

El-Nachef, D.; Martinson, A. M.; Yang, X.; Murry, C. E.; MacLellan, W. R.

10.1101/855254 — cell biology — Posted on 2019-11-26

597 TCF7L2 plays a complex role in human adipose progenitor biology which may contribute to genetic susceptibility to type 2 diabetes.

Verma, M.; Loh, N. Y.; Vasan, S. K.; van Dam, A. D.; Todorcevic, M.; Neville, M. J.; Karpe, F.; Christodoulides, C.

10.1101/854661 — cell biology — Posted on 2019-11-26

598 AFM-based High-Throughput Nanomechanical Screening of Single Extracellular Vesicles

Ridolfi, A.; Brucale, M.; Montis, C.; Caselli, L.; Paolini, L.; Borup, A.; Boysen, A. T.; Loria, F.; van Herwijnen, M. J. C.; Kleinjan, M.; Nejsum, P.; Zarovni, N.; Wauben, M. H. M.; Berti, D.; Bergese, P.; Valle, F.

10.1101/854539 — biophysics — Posted on 2019-11-26

599 Loss Of Nuclear Deformability Of Breast Cancer Cells By The Disruption Of Actin Filaments

Antmen, E.; Demirci, U.; Hasirci, V.

10.1101/854562 — bioengineering — Posted on 2019-11-26

600 Rapid light-dependent degradation of fluorescent dyes in formulated serum-free media

Morawski, P. A.; Motley, S.; Campbell, D.

10.1101/578856 — immunology — Posted on 2019-11-26

601 Micro-pellet culture reveals that bone marrow mesenchymal stromal cell (BMSC) chondrogenic induction is triggered by a single day of TGF-β1 exposure

Futrega, K.; Robey, P. G.; Klein, T. J.; Crawford, R.; Doran, M. R.

10.1101/853556 — cell biology — Posted on 2019-11-26

602 TORC1 regulates vacuole membrane composition through ubiquitin- and ESCRT-dependent microautophagy

Yang, X.; Zhang, W.; Wen, X.; Bulinski, P. J.; Chomchai, D. A.; Arines, F. M.; Liu, Y.-Y.; Sprenger, S.; Teis, D.; Klionsky, D. J.; Li, M.

10.1101/854760 — cell biology — Posted on 2019-11-26

603 Predicting mechanism of action of cellular perturbations with pathway activity signatures

Ren, Y.; Sivaganesan, S.; Clark, N.; Zhang, L.; Biesiada, J.; Niu, W.; Plas, D.; Medvedovic, M.

10.1101/705228 — systems biology — Posted on 2019-11-26

604 Paternal age in rhesus macaques is positively associated with germline mutation accumulation but not with measures of offspring sociability

Wang, R. J.; Thomas, G. W. C.; Raveendran, M.; Harris, A. R.; Doddapaneni, H.; Muzny, D. M.; Capitanio, J. P.; Radivojac, P.; Rogers, J.; Hahn, M. W.

10.1101/706705 — evolutionary biology — Posted on 2019-11-26

605 Marked compositional changes in harvestmen assemblages in Amazonian forest islands induced by a mega dam

Tourinho, A. L.; Benchimol, M.; Porto, W.; Peres, C.; Storck Tonon, D.

10.1101/542969 — ecology — Posted on 2019-11-26

606 AFid: A tool for automated identification and exclusion of autofluorescent objects from microscopy images

Baharlou, H.; Canete, N. P.; Bertram, K. M.; Sandgren, K. J.; Cunningham, A. L.; Harman, A. N.; Patrick, E.

10.1101/566315 — bioinformatics — Posted on 2019-11-26

607 A novel somatosensory spatial navigation system outside the hippocampal formation

Long, X.; Zhang, S.-J.

10.1101/473090 — neuroscience — Posted on 2019-11-26

608 Loss of centromere function drives karyotype evolution in closely related Malassezia species

Sankaranarayanan, S. R.; Ianiri, G.; Coelho, M. A.; Reza, M. H.; Thimmappa, B. C.; Ganguly, P.; Vadnala, R. N.; Sun, S.; Siddharthan, R.; Tellgren-Roth, C.; Dawson, T. L.; Heitman, J.; Sanyal, K.

10.1101/533794 — genomics — Posted on 2019-11-26

609 Cytological and genetic consequences for the progeny of a mitotic catastrophe provoked by Topoisomerase II deficiency.

Ramos-Perez, C.; Dominska, M.; Anaissi-Afonso, L.; Cazorla-Rivero, S.; Quevedo, O.; Lorenzo-Castrillejo, I.; Petes, T. D.; Machin, F.

10.1101/668954 — cell biology — Posted on 2019-11-26

610 Heterologous glycosyl hydrolase expression and cellular reprogramming resembling sucrose-induction enable Zymomonas mobilis growth on cellobiose

Kurumbang, N. P.; Vera, J. M.; Hebert, A. S.; Coon, J. J.; Landick, R.

10.1101/854646 — microbiology — Posted on 2019-11-25

611 Highly clade-specific biosynthesis of rhamnose: present in all plants and in only 42% of prokaryotes.Only Pseudomonas uses both D- and L-rhamnose

Mishra, T.; Balaji, P. V.

10.1101/854612 — genomics — Posted on 2019-11-25

612 SIRT2-knockdown Rescues GARS-induced Charcot-Marie-Tooth Neuropathy

Shen, C.; Qi, Q.; Qin, Y.; Zhou, D.; Chen, X.; Qi, Y.; Yan, Z.; Lin, X.; Lin, J.; YU, W.

10.1101/854588 — cell biology — Posted on 2019-11-25

613 Neonatal endotoxin stimulation was associated with long- term innate immune markers and an anti-allergic response in bronchiolar epithelium in spite of allergen challenge

Garcia, L. N.; Leimgruber, C.; Nicola, J. P.; Quintar, A. A.; Maldonado, C. A.

10.1101/854604 — cell biology — Posted on 2019-11-25

614 Cholesterol binding to the sterol-sensing region of Niemann Pick C1 protein confines dynamics of its N-terminal domain

Dubey, V.; Bozorg, B.; Wuestner, D.; Khandelia, H.

10.1101/854620 — biophysics — Posted on 2019-11-25

615 Investigation of the quorum-sensing regulon of the biocontrol bacterium Pseudomonas chlororaphis strain PA23

Shah, N.; Gislason, A.; Becker, M.; Belmonte, M.; Fernando, D.; de Kievit, T.

10.1101/854596 — microbiology — Posted on 2019-11-25

616 PGR5 is required for efficient Q cycle in the cytochrome b6f complex during cyclic electron flow

Buchert, F.; Mosebach, L.; Gaebelein, P.; Hippler, M.

10.1101/854489 — plant biology — Posted on 2019-11-25

617 Towards the molecular architecture of the peroxisomal receptor docking complex

Lill, P.; Hansen, T.; Wendscheck, D.; Klink, B. U.; Jeziorek, T.; Bender, J.; Drepper, F.; Girzalsky, W.; Erdmann, R.; Warscheid, B.; Gatsogiannis, C.

10.1101/854497 — molecular biology — Posted on 2019-11-25

618 Dynamic regulation of CD45 by tetraspanin CD53

Dunlock, V.-M. E.; Arp, A. B.; Jansen, E.; Charrin, S.; van Deventer, S. J.; Wright, M. D.; Querol-Cano, L.; Rubinstein, E.; van Spriel, A. B.

10.1101/854323 — immunology — Posted on 2019-11-25

619 Extended Recognition of the Histone H3 Tail by Histone Demethylase KDM5A

Petronikolou, N.; Longbotham, J. E.; Fujimori, D.

10.1101/854265 — biochemistry — Posted on 2019-11-25

620 Single Cell RNA Sequencing Reveals Heterogeneity of Human MSC Chondrogenesis: Lasso Regularized Logistic Regression to Identify Gene and Regulatory Signatures

Huynh, N. P.; Kelly, N. H.; Katz, D. B.; Pham, M.; Guilak, F.

10.1101/854406 — genomics — Posted on 2019-11-25

621 PRISM: Recovering cell type specific expression profilesfrom composite RNA-seq data

Häkkinen, A.; Zhang, K.; Alkodsi, A.; Andersson, N.; Pekcan Erkan, E.; Dai, J.; Kaipio, K.; Lamminen, T.; Mansuri, N.; Huhtinen, K.; Vähärautio, A.; Carpen, O.; Hynninen, J.; Hietanen, S.; Lehtonen, R.; Hautaniemi, S.

10.1101/854505 — bioinformatics — Posted on 2019-11-25

622 Tau deposition is associated with imaging patterns of tissue calcification in the P301L mouse model of human tauopathy

Ni, R.; Zarb, Y.; Kuhn, G. A.; Mueller, R.; Yundung, Y.; Nitsch, R. M.; Kulic, L.; Keller, A.; Klohs, J.

10.1101/851915 — neuroscience — Posted on 2019-11-25

623 Functions of Gtf2i and Gtf2ird1 in the developing brain: transcription, DNA-binding, and long term behavioral consequences.

Kopp, N. D.; Nygaard, K. R.; McCullough, K. B.; Maloney, S. E.; Gabel, H. W.; Dougherty, J.

10.1101/854851 — genetics — Posted on 2019-11-25

624 pepFunk, a tool for peptide-centric functional analysis in metaproteomic human gut microbiome studies

Simopoulos, C. M. A.; Ning, Z.; Zhang, X.; Li, L.; Walker, K.; Lavallee-Adam, M.; Figeys, D.

10.1101/854976 — bioinformatics — Posted on 2019-11-25

625 Transitional evolutionary forms and stratigraphic trends in chasmosaurine ceratopsid dinosaurs : evidence from the Campanian of New Mexico

Fowler, D. W.; Freedman Fowler, E. A.

10.1101/854794 — paleontology — Posted on 2019-11-25

626 dNEMO: a tool for quantification of mRNA and punctate structures in time-lapse images of single cells

Kowalczyk, G. J.; Cruz, J. A.; Guo, Y.; Zhang, Q.; Sauerwald, N.; Lee, R. E. C.

10.1101/855213 — cell biology — Posted on 2019-11-25

627 Phoenix Enhancer: an online service/tool for proteomics data mining using clustered spectra

Bai, M.; Qin, C.; Shu, K.; Griss, J.; Perez-Riverol, Y.; Zhu, W.; Hermjakob, H.

10.1101/846303 — bioinformatics — Posted on 2019-11-25

628 Distinct neural substrates for opening and closing the gate from perception to working memory

Nir-Cohen, G.; Kessler, Y.; Egner, T.

10.1101/853630 — neuroscience — Posted on 2019-11-25

629 The Ccr4-Not complex monitors the translating ribosome for codon optimality

Buschauer, R.; Matsuo, Y.; Chen, Y.-H.; Alhusaini, N.; Sweet, T.; Sugiyama, T.; Ikeuchi, K.; Cheng, J.; Matsuki, Y.; Gilmozzi, A.; Berninghausen, O.; Becker, T.; Coller, J.; Inada, T.; Beckmann, R.

10.1101/854810 — molecular biology — Posted on 2019-11-25

630 CrkL is required for donor T cell migration to GvHD Target organs

Roy, N. H.; Mammadli, M.; Burkhardt, J. K.; Karimi, M.

10.1101/854042 — immunology — Posted on 2019-11-25

631 Integrative Genomic Analysis and Functional Studies Reveal GP5, GRN, MPO and MCAM as Causal Protein Biomarkers for Platelet Traits

Lee, D. H.; Yao, C.; Bhan, A.; Schlaeger, T.; Keefe, J.; Rodriguez, B.; Hwang, S.-J.; Chen, M.-H.; Levy, D.; Johnson, A. D.

10.1101/854216 — genomics — Posted on 2019-11-25

632 Biophysical mechanism of ultrafast helical twisting contraction in the giant unicellular ciliate Spirostomum ambiguum

Xinjing, L. X.; Bhamla, S.

10.1101/854836 — biophysics — Posted on 2019-11-25

633 The HMGB1-RAGE axis modulates the growth of autophagy-deficient hepatic tumors

Khambu, B.; Hong, H.; Liu, S.; Liu, G.; Chen, X.; Dong, Z.; Wan, J.; Yin, X.-M.

10.1101/847673 — cancer biology — Posted on 2019-11-25

634 Obstacles to the Reuse of Study Metadata in ClinicalTrials.gov

Miron, L.; Goncalves, R. S.; Musen, M.

10.1101/850578 — scientific communication and education — Posted on 2019-11-25

635 Fully Bayesian longitudinal unsupervised learning for the assessment and visualization of AD heterogeneity and progression

Poulakis, K.; Ferreira, D.; Pereira, J. B.; Smedby, O.; Vemuri, P.; Westman, E.

10.1101/854356 — neuroscience — Posted on 2019-11-25

636 Host-adaptation in Legionellales is 2.4 Gya, coincident with eukaryogenesis

Hugoson, E.; Ammunet, T.; Guy, L.

10.1101/852004 — evolutionary biology — Posted on 2019-11-25

637 Binding of a tetracationic meso-porphyrin to polyadenylic acid: a spectroscopic study

Ryazanova, O. A.; Voloshin, I. M.; Zozulya, V. N.

10.1101/854380 — biophysics — Posted on 2019-11-25

638 Diurnal variations in the motility of algal populations

Jin, D.; Kotar, J.; Silvester, E.; Leptos, K.; Croze, O. A.

10.1101/854844 — biophysics — Posted on 2019-11-25

639 The identity and methylation status of the first transcribed nucleotide in eukaryotic mRNA 5' cap modulates protein expression in living cells

Sikorski, P. J.; Warminski, M.; Kubacka, D.; Ratajczak, T.; Nowis, D.; Kowalska, J.; Jemielity, J.

10.1101/852434 — biochemistry — Posted on 2019-11-25

640 The inhibition of cellular toxicity of amyloid-beta by dissociated transthyretin

Saelices, L.; Cao, Q.; Anderson, D. H.; Liang, W. Y.; Chou, J.; Eisenberg, D. S.

10.1101/852715 — biochemistry — Posted on 2019-11-25

641 Biological data questions the support of the self inhibition required for pattern generation in the half center model.

Kohler, M.; Stratmann, P.; Roehrbein, F.; Knoll, A.; Alin Albu-Schaeffer, A.; Joerntell, H.

10.1101/851154 — neuroscience — Posted on 2019-11-25

642 Can computers understand word meanings like the human brain does? Comparable semantic representation in neural and computer systems

Zhang, L.; Wang, L.; Yang, J.; Qian, P.; Wang, X.; Qiu, X.; Zhang, Z.; Tian, X.

10.1101/843896 — neuroscience — Posted on 2019-11-25

643 The Oscillatory ReConstruction Algorithm (ORCA) adaptively identifies frequency bands to improve spectral decomposition in human and rodent neural recordings

Watrous, A. J.; Buchanan, R.

10.1101/855288 — neuroscience — Posted on 2019-11-25

644 Locally adaptive Bayesian birth-death model successfully detects slow and rapid rate shifts

Magee, A. F.; Höhna, S.; Vasylyeva, T. I.; Leache, A. D.; Minin, V. N.

10.1101/853960 — evolutionary biology — Posted on 2019-11-25

645 The role of host phenology for parasite transmission

MacDonald, H.; Akcay, E.; Brisson, D.

10.1101/855031 — ecology — Posted on 2019-11-25

646 Independent evolution of lateral inhibition mechanisms in different lineages of land plants: MpFEW RHIZOIDS1 miRNA-mediated lateral inhibition controls rhizoid cell patterning in Marchantia polymorpha

Thamm, A.; Saunders, T. E.; Dolan, L.

10.1101/854869 — developmental biology — Posted on 2019-11-25

647 Persistence of a novel regeneration-associated transitional cell state in pulmonary fibrosis

Kobayashi, Y.; Tata, A.; Konkimalla, A.; Katsura, H.; Lee, R. F.; Ou, J.; Banovich, N. E.; Kropski, J. A.; Tata, P. R.

10.1101/855155 — cell biology — Posted on 2019-11-25

648 Restoration, dispersal and settlement of native European oyster (Ostrea edulis) in energetic tidal areas

Willis, J.; Kamphausen, L.; Jensen, A.; Herbert, R. J. H.; Jones, E.

10.1101/853911 — zoology — Posted on 2019-11-25

649 Development of PAR-CLIP to analyze RNA-protein interactions in prokaryotes

Ojha, S.; Jain, C.

10.1101/855189 — microbiology — Posted on 2019-11-25

650 Understanding the introgression process from Aegilops tauschii into hexaploid wheat through identity by descent analysis and its effect on genetic diversity

Nyine, M.; Adhikari, E.; Clinesmith, M.; Jordan, K.; Fritz, A. K.; Akhunov, E.

10.1101/855106 — genetics — Posted on 2019-11-25

651 eMAGMA: An eQTL-informed method to identify risk genes using genome-wide association study summary statistics

Gerring, Z. F.; Mina-Vargas, A.; Derks, E. M.

10.1101/854315 — genetics — Posted on 2019-11-25

652 Accumulation Of 137Cs In Insects - Herpetobiont Integuments

Monoshyn, D.; Rudchenko, L.; Shupova, T.; Gaychenko, V.

10.1101/853242 — ecology — Posted on 2019-11-25

653 Inhibition of TXNRD or SOD1 overcomes NRF2-mediated resistance to β-lapachone

Torrente, L.; Prieto, N.; Falzone, A.; Boothman, D. A.; Haura, E. B.; DeNicola, G. M.

10.1101/849927 — cancer biology — Posted on 2019-11-25

654 Latent factor modelling of scRNA-seq data uncovers novel pathways dysregulated in cell subsets of autoimmune disease patients

Palla, G.; Ferrero, E.

10.1101/853903 — bioinformatics — Posted on 2019-11-25

655 Reactomics: Using mass spectrometry as a chemical reaction detector

Yu, M.; Petrick, L.

10.1101/855148 — bioinformatics — Posted on 2019-11-25

656 Engineering transplantable jejunal mucosal grafts using primary patient-derived organoids from children with intestinal failure

Meran, L.; Massie, I.; Weston, A.; Gaifulina, R.; Faull, P.; Orford, M.; Kucharska, A.; Baulies, A.; Hirst, E.; Konig, J.; Tedeschi, A. M.; Pellegata, A. F.; Eli, S.; Snijders, A. P.; Collinson, L.; Thapar, N.; Thomas, G.; Eaton, S.; Bonfanti, P.; De Coppi, P.; Li, V. S. W.

10.1101/854083 — bioengineering — Posted on 2019-11-25

657 Agrin promotes coordinated therapeutic processes leading to improved cardiac repair in pigs

Baehr, A.; Umansky, K. B.; Bassat, E.; Klett, K.; Jurisch, V.; Bozoglu, T.; Hornaschewitz, N.; Solyanik, O.; Kain, D.; Ferrero, B.; Cohen-Rabi, R.; Krane, M.; Cyran, C.; Soehnlein, O.; Laugwitz, K. L.; Hinkel, R.; Kupatt, C.; Tzahor, E.

10.1101/854372 — physiology — Posted on 2019-11-25

658 Systematic localization of Gram-negative bacterial membrane proteins

Sueki, A.; Stein, F.; Savitski, M.; Selkrig, J.; Typas, A.

10.1101/855171 — microbiology — Posted on 2019-11-25

659 A Partially Phase-Separated Genome Sequence Assembly of the Vitis Rootstock 'Börner' (Vitis riparia x Vitis cinerea) and its Exploitation for Marker Development and Targeted Mapping

Holtgräwe, D.; Hausmann, L.; Rosleff Soerensen, T.; Pucker, B.; Viehöver, P.; Töpfer, R.; Weisshaar, B.

10.1101/854687 — genomics — Posted on 2019-11-25

660 Simulating isolated populations to identify emerging genetic structure in the absence of selection

Hosking, C.; Ogden, R.; Senn, H.

10.1101/853895 — genetics — Posted on 2019-11-25

661 PAX8 expressing epithelial cells are a cancer-prone source of clonal cyclical regeneration of endometrial epithelium

Fu, D.-J.; De Micheli, A. J.; Bidarimath, M.; Ellenson, L.; Cosgrove, B. D.; Flesken-Nikitin, A.; Nikitin, A.

10.1101/853994 — cancer biology — Posted on 2019-11-25

662 RIPK3 inhibition prevents KRAS mutant p53 deficient lung tumor progression by impeding MDSCs

Jayakumar, A.

10.1101/853978 — cancer biology — Posted on 2019-11-25

663 Identification of miRNA signatures for kidney renal clear cell carcinoma using the tensor-decomposition method

Ng, K.-L.; Taguchi, Y.-h.

10.1101/849679 — bioinformatics — Posted on 2019-11-25

664 CiteFuse enables multi-modal analysis of CITE-seq data

Kim, H. J.; Lin, Y.; Geddes, T. A.; Yang, J. Y. H.; Yang, P.

10.1101/854299 — bioinformatics — Posted on 2019-11-25

665 Addressing dereplication crisis: Taxonomy-free reduction of massive genome collections using embeddings of protein content

Viehweger, A.; Hoelzer, M.; Brandt, C.

10.1101/855262 — bioinformatics — Posted on 2019-11-25

666 A one-step biofunctionalization strategy of electrospun scaffolds enables spatially selective presentation of biological cues

Wieringa, P.; Girao, A.; Truckenmuller, R.; Welle, A.; Micera, S.; van Wezel, R.; Moroni, L.

10.1101/850875 — bioengineering — Posted on 2019-11-25

667 Dynamics of host glutathione and glutathione related enzymes in Macrophomina phaseolina-sorghum bicolor interaction

Bandara, A. Y.; Weerasooriya, D. K.; Liu, S.; Little, C. R.

10.1101/853986 — biochemistry — Posted on 2019-11-25

668 hFUT1-based live cell assay to profile α1-2-fucosides enhanced influenza A virus infection

Hong, S.; Grande, G.; Yu, C.; Chapla, D. G.; Reigh, N.; Yang, Y.; Izumori, K.; Moremen, K. W.; Xie, J.; Wu, P.

10.1101/854166 — biochemistry — Posted on 2019-11-25

669 Idiosyncratic liver alterations of five frog species to land use changes in the Brazilian Cerrado

Franco-Belussi, L.; Provete, D. B.; Borges, R. E.; de Oliveira, C.; Santos, L. R. d. S.

10.1101/837534 — zoology — Posted on 2019-11-25

670 Messinian vegetation and climate of the intermontane Florina-Ptolemais-Servia Basin, NW Greece inferred from palaeobotanical data: How well do plant fossils reflect past environments?

Bouchal, J. M.; Güner, T. H.; Velitzelos, D.; Velitzelos, E.; Denk, T.

10.1101/848747 — paleontology — Posted on 2019-11-25

671 Retrieval of a well-established skill is resistant to distraction: evidence from an implicit probabilistic sequence learning task

Vekony, T.; Torok, L.; Pedraza, F.; Schipper, K.; Pleche, C.; Toth, L.; Janacsek, K.; Nemeth, D.

10.1101/849729 — neuroscience — Posted on 2019-11-25

672 Standardizing Human Brain Parcellations

Myers, P. E.; Arvapalli, G. C.; Ramachandran, S. C.; Pisner, D. A.; Frank, P. F.; Lemmer, A. D.; Bridgeford, E. W.; Nikolaidis, A.; Vogelstein, J. T.

10.1101/845065 — neuroscience — Posted on 2019-11-25

673 Structure of the Fanconi Anemia Core-UBE2T complex poised to ubiquitinate bound FANCI-FANCD2

Wang, S.; Wang, R.; Peralta, C.; Yaseen, A.; Pavletich, N. P.

10.1101/854158 — molecular biology — Posted on 2019-11-25

674 Combined use of metagenomic sequencing and host response profiling for the diagnosis of suspected sepsis.

Cheng, H. K.; Tan, S. K.; Sweeney, T. E.; Jeganathan, P.; Briese, T.; Khadka, V.; Strouts, F.; Thair, S.; Dalai, S.; Hitchcock, M.; Multani, A.; Aronson, J.; Andermann, T.; Yu, A.; Yang, S.; Holmes, S.; Lipkin, W. I.; Khatri, P.; Relman, D. A.

10.1101/854182 — microbiology — Posted on 2019-11-25

675 Addition of insoluble fiber to isolation media allows for increased metabolite diversity of lab-cultivable microbes derived from zebrafish gut samples

Condren, A. R.; Costa, M. S.; Rivera Sanchez, N.; Konkapaka, S.; Gallik, K. L.; Saxena, A.; Murphy, B. T.; Sanchez, L. M.

10.1101/854109 — microbiology — Posted on 2019-11-25

676 Self-Organization of Whole Gene Expression through Coordinated Chromatin Structural Transition: Validation of Self-Organized Critical Control of Genome Expression

Zimatore, G.; Tsuchiya, M.; Hashimoto, M.; Kasperski, A.; Giuliani, A.

10.1101/852681 — genomics — Posted on 2019-11-25

677 Artificial selection finds new hypotheses for the mechanism of Wolbachia-mediated dengue blocking in mosquitoes

Ford, S. A.; Albert, I.; Allen, S. L.; Chenoweth, S.; Jones, M.; Koh, C.; Sebastian, A.; Sigle, L. T.; McGraw, E. A.

10.1101/847087 — evolutionary biology — Posted on 2019-11-25

678 Integrating the host plant phylogeny, plant traits, intraspecific competition and repeated measures using a phylogenetic mixed model of field behaviour by polyphagous herbivores, the leaf-cutting ants

Weerathunga, W. A. M. T.; Mikheyev, A. S.

10.1101/854471 — ecology — Posted on 2019-11-25

679 CHROMATIX: computing the functional landscape of many-body chromatin interactions in transcriptionally active loci

Perez-Rathke, A.; Sun, Q.; Wang, B.; Boeva, V.; Shao, Z.; Liang, J.

10.1101/854190 — bioinformatics — Posted on 2019-11-25

680 Host lipid alterations after Macrophomina phaseolina infection contribute to charcoal rot disease susceptibility in grain sorghum: Evidence from transcriptomic and lipidomic data.

Bandara, A. Y.; Weerasooriya, D. K.; Liu, S.; Little, C. R.

10.1101/854067 — biochemistry — Posted on 2019-11-25

681 Native mass spectrometry can effectively predict PROTAC efficacy

Beveridge, R.; Kessler, D.; Rumpel, K.; Ettmayer, P.; Meinhart, A.; Clausen, T.

10.1101/851980 — biochemistry — Posted on 2019-11-25

682 Supporting Computational Apprenticeship through educational and software infrastructure. A case study in a mathematical oncology research lab

Madamanchi, A.; Thomas, M.; Magana, A.; Heiland, R.; Macklin, P.

10.1101/835363 — scientific communication and education — Posted on 2019-11-25

683 A classification of functional pitcher types in Nepenthes (Nepenthaceae).

Cheek, M.; Jebb, M.; Murphy, B.

10.1101/852137 — plant biology — Posted on 2019-11-25

684 Thermal Hazards for Honey Bee Queens

McAfee, A.; Chapman, A.; Higo, H.; Underwood, R. M.; Milone, J. P.; Foster, L. J.; Guarna, M. M.; Tarpy, D. R.; Pettis, J. S.

10.1101/627729 — physiology — Posted on 2019-11-25

685 Tet2 negatively regulates memory fidelity

Zengeler, K. E.; Gettens, C. P.; Smith, H. C.; Caron, M. M.; Zhang, X.; Howard, A. H.; Boitnott, A. R.; Gogliettino, A. R.; Reda, A.; Malachowsky, B. G.; Zhong, C.; Song, H.; Kaas, G. A.; Kennedy, A. J.

10.1101/843581 — neuroscience — Posted on 2019-11-25

686 Central norepinephrine transmission is required for stress-induced repetitive behavior in two rodent models of obsessive-compulsive disorder

Lustberg, D.; Iannitelli, A.; Tillage, R. P.; Pruitt, M.; Liles, L. C.; Weinshenker, D.

10.1101/855205 — neuroscience — Posted on 2019-11-25

687 Perceived Stress in First-Year Medical Students and its Effect on Gut Microbiota

Rusling, M. R.; Johnson, J.; Shoskes, A.; Jie, C.; Yuan, L.-L.

10.1101/854174 — neuroscience — Posted on 2019-11-25

688 Transcriptional signatures of participant-derived neural progenitor cells and neurons implicate altered Wnt signaling in Phelan McDermid syndrome and autism

Breen, M. S.; Browne, A.; Hoffman, G. E.; Stathopoulos, S.; Brennand, K.; Buxbaum, J.; Drapeau, E.

10.1101/855163 — neuroscience — Posted on 2019-11-25

689 High-Resolution Single-Cell Models of Ensemble Chromatin Structures during Drosophila Embryogenesis from Population Hi-C

Sun, Q.; Perez-Rathke, A.; Czajkowsky, D. M.; Shao, Z.; Liang, J.

10.1101/854257 — genomics — Posted on 2019-11-25

690 The Molecular Basis of Specific DNA Binding by the BRG1 AT-hook and Bromodomain

Sanchez, J. C.; Zhang, L.; Evoli, S.; Schnicker, N. J.; Nunez-Hernandez, M.; Yu, L.; Wereszczynski, J.; Pufall, M. A.; Musselman, C. A.

10.1101/854000 — biochemistry — Posted on 2019-11-25

691 Sex chromosome pairing mediated by euchromatic homology in Drosophila male meiosis

Hylton, C. A.; Tomkiel, J.; Hansen, K.; Bourgeois, A.

10.1101/854877 — genetics — Posted on 2019-11-25

692 Tau-tubulin kinase 1 and amyloid-β peptide induce phosphorylation of collapsin response mediator protein-2 and enhance neurite degeneration in Alzheimer disease mouse models

Ikezu, S.; Ingraham Dixie, K. L.; Koro, L.; Watanabe, T.; Kaibuchi, K.; Ikezu, T.

10.1101/855015 — neuroscience — Posted on 2019-11-25

693 DNA clamp function of the mono-ubiquitinated Fanconi Anemia FANCI-FANCD2 complex

Wang, R.; Wang, S.; Dhar, A.; Peralta, C.; Pavletich, N. P.

10.1101/854133 — molecular biology — Posted on 2019-11-25

694 Selection on a pleiotropic color gene block underpins early differentiation between two warbler species

Wang, S.; Rohwer, S.; de Zwaan, D. R.; Toews, D. P. L.; Lovette, I. J.; Mackenzie, J.; Irwin, D. E.

10.1101/853390 — evolutionary biology — Posted on 2019-11-25

695 A subset of broadly responsive Type III taste cells contribute to the detection of bitter, sweet and umami stimuli

Dutta Banik, D.; Benfey, E. D.; Martin, L. E.; Kay, K. E.; Loney, G. C.; Nelson, A. R.; Ahart, Z. C.; Kemp, B. T.; Kemp, B. R.; Torregrossa, A.-M.; Medler, K. F.

10.1101/660589 — neuroscience — Posted on 2019-11-25

696 An improved whole life cycle culture protocol for the hydrozoan genetic model Clytia hemisphaerica.

Lechable, M.; Jan, A.; Weissbourd, B. C.; Uveira, J.; Gissat, L.; Collet, S.; Gilletta, L.; Chevalier, S.; Leclere, L.; Peron, S.; Barreau, C.; Lasbleiz, R.; Houliston, E.; Momose, T.

10.1101/852632 — developmental biology — Posted on 2019-11-25

697 Genetically variant human pluripotent stem cells selectively eliminate wild-type counterparts through YAP-mediated cell competition

Price, C. J.; Stavish, D.; Gokhale, P. J.; Sargeant, S.; Lacey, J.; Rodriguez, T. A.; Barbaric, I.

10.1101/854430 — cell biology — Posted on 2019-11-25

698 SPECC1L-deficient palate mesenchyme cells show speed and directionality defect

Goering, J. P.; Isai, D. G.; Hall, E. G.; Wilson, N. R.; Kosa, E.; Wenger, L. W.; Umar, Z.; Yousaf, A.; Czirok, A.; Saadi, I.

10.1101/854273 — cell biology — Posted on 2019-11-25

699 Lin28a/let-7 Pathway Modulates the Hox Code via Polycomb Regulation during Axial Patterning in Vertebrates

Sato, T.; Kataoka, K.; Ito, Y.; Yokoyama, S.; Inui, M.; Mori, M.; Takahashi, S.; Akita, K.; Takada, S.; Ueno-Kudoh, H.; Asahara, H.

10.1101/854091 — developmental biology — Posted on 2019-11-25

700 Single Cell RNA Sequencing of Calvarial and Long Bone Endocortical Cells

Ayturk, U. M.; Scollan, J. P.; Vesprey, A.; Jacobsen, C. M.; Divieti Pajevic, P.; Warman, M.

10.1101/849224 — cell biology — Posted on 2019-11-25

701 High-resolution transcriptomic profiling of the heart during chronic stress reveals cellular drivers of cardiac fibrosis and hypertrophy

McLellan, M. A.; Skelly, D. A.; Dona, M. S. I.; Squiers, G. T.; Farrugia, G. E.; Gaynor, T. L.; Cohen, C. D.; Pandey, R.; Diep, H.; Vinh, A.; Rosenthal, N. A.; Pinto, A. R.

10.1101/854026 — cell biology — Posted on 2019-11-25

702 Dynamic evolution of cervical cancer mutations during chemoradiation using novel sampling approach

Chapman, B. V.; Karpinets, T.; Sims, T. T.; Biegert, G.; Wu, X.; Delgado Medrano, A. Y.; Eifel, P. J.; Jhingran, A.; Lin, L. L.; Ramondetta, L. M.; Futreal, A. M.; Jazaeri, A. A.; Frumovitz, M.; Schmeler, K. M.; Yue, J.; Mitra, A.; Yoshida-Court, K.; Solley, T.; Mathew, G.; Ahmed-Kaddar, M.; Zhang, J.; Klopp, A.; Colbert, L.

10.1101/850388 — cancer biology — Posted on 2019-11-25

703 Evolution of gastrointestinal tract morphology and plasticity in cave-adapted Mexican tetra, Astyanax mexicanus

Riddle, M. R.; Damen, F.; Aspiras, A.; Tabin, J. A.; McGaugh, S.; Tabin, C.

10.1101/852814 — evolutionary biology — Posted on 2019-11-25

704 Non-invasive neuromodulation using rTMS and the Electromagnetic-Perceptive Gene (EPG) facilitates plasticity after nerve injury

Cywiak, C.; Ashbaugh, R. C.; Metto, A.; Udpa, L.; Qian, C.; Gilad, A. A.; Zhong, M.; Pelled, G.

10.1101/851444 — neuroscience — Posted on 2019-11-25

705 Predicting Latent Links from Incomplete Network Data Using Exponential Random Graph Model with Outcome Misclassification

Wu, Q.; Zhang, Z.; Waltz, J.; Ma, T.; Milton, D.; Chen, S.

10.1101/852798 — neuroscience — Posted on 2019-11-25

706 Meta-analysis of Scandinavian Schizophrenia Exomes

Lescai, F.; Grove, J.; Satterstrom, F. K.; Rees, E.; Bybjerg-Grauholm, J.; Damm Als, T.; Kalinowski, J.; Halager, A.; Singh, T.; Li, Q.; Wang, J.; Walters, J. T.; Owen, M. J.; O'Donovan, M.; Nordentoft, M.; Mortensen, P. B.; Hougaard, D. M.; Werge, T.; Mors, O.; Neale, B.; Daly, M.; Boerglum, A.

10.1101/836957 — genetics — Posted on 2019-11-25

707 Cerebellar patients have intact feedback control that can be leveraged to improve reaching

Zimmet, A. M.; Bastian, A. J.; Cowan, N.

10.1101/827113 — neuroscience — Posted on 2019-11-25

708 Investigation of the quorum-sensing regulon of the biocontrol bacterium Pseudomonas chlororaphis strain PA23

Shah, N.; Gislason, A.; Becker, M.; Belmonte, M.; Fernando, D.; de Kievit, T.

10.1101/854596 — microbiology — Posted on 2019-11-25

709 Enzalutamide-induced PTH1R-mediated TGFBR2 decrease in osteoblasts contributes to resistance in prostate cancer bone metastases

Su, S.; Cao, J.; Meng, X.; Liu, R.; Vander Ark, A.; Woodford, E.; Zhang, R.; Stiver, I.; Zhang, X.; Madaj, Z. B.; Bowman, M. J.; Wu, Y.; Xu, H. E.; Chen, B.; Yu, H.; Li, X.

10.1101/829044 — cancer biology — Posted on 2019-11-25

710 Asymmetry in kinematic generalisation between visual and passive lead-in movements are consistent with a forward model in the sensorimotor system

Howard, I. S.; Franklin, S.; Franklin, D. W.

10.1101/636266 — neuroscience — Posted on 2019-11-25

711 A cell surface arabinogalactan-peptide influences root hair cell fate

Borassi, C.; Ricardi, M.; Gloazzo Dorosz, J. A.; Pol Fachin, L.; Carignani, M.; Marzol, E.; Mangano, S.; Rodriguez Garcia, D. R.; Martinez Pacheco, J.; Rondon Gurerrero, Y. d. C.; Velasquez, S. M.; Villavicencio, B.; Ciancia, M.; Seifert, G.; Verli, H.; Estevez, J. M.

10.1101/787143 — plant biology — Posted on 2019-11-25

712 Disentangling causal relationships between inflammatory markers and depression: a bidirectional Mendelian randomization analysis

Dardani, C.; Yarmolinsky, J.; Robinson, J.; Zheng, J.; Davey Smith, G.; Lewis, S. J.; Sinclair, L. I.

10.1101/712133 — genomics — Posted on 2019-11-25

713 Loss of histone H3.3 results in DNA replication defects and altered origin dynamics in C. elegans

Strobino, M.; Wenda, J. M.; Steiner, F. A.

10.1101/854455 — genetics — Posted on 2019-11-25

714 Paralogs and off-target sequences improve phylogenetic resolution in a densely-sampled study of the breadfruit genus (Artocarpus, Moraceae)

Gardner, E. M.; Johnson, M. G.; Pereira, J. T.; Puad, A. S. A.; Arifiani, D.; Sahromi, S.; Wickett, N. J.; Zerega, N. J. C.

10.1101/854232 — evolutionary biology — Posted on 2019-11-25

715 Microbiota composition and evenness predict survival rate of oysters confronted to Pacific Oyster Mortality Syndrome

Clerissi, C.; de Lorgeril, J.; Petton, B.; Lucasson, A.; Escoubas, J.-M.; Gueguen, Y.; Degremont, L.; Mitta, G.; Toulza, E.

10.1101/378125 — microbiology — Posted on 2019-11-25

716 Analysis of the effects of related fingerprints on molecular similarity using an eigenvalue entropy approach

Kuwahara, H.; Gao, X.

10.1101/853762 — bioinformatics — Posted on 2019-11-25

717 Face familiarity detection with complex synapses

Ji-An, L.; Stefanini, F.; Benna, M. K.; Fusi, S.

10.1101/854059 — neuroscience — Posted on 2019-11-25

Garakh, Z.; Larionova, E.

10.1101/853705 — neuroscience — Posted on 2019-11-25

719 The necrotrophic fungus Macrophomina phaseolina induces oxidative stress-associated genes and related biochemical responses in charcoal rot susceptible sorghum genotypes

Bandara, A. Y.; Weerasooriya, D. K.; Liu, S.; Little, C. R.

10.1101/853846 — biochemistry — Posted on 2019-11-25

720 A new method for measuring fish swimming patterns in shallow water and a previously undescribed swimming gait

Willis, J.; Thomas, A. L. R.; Burt de Perera, T.; Poncelet, G.

10.1101/853853 — zoology — Posted on 2019-11-25

721 Visual landmarks calibrate auditory space across eye movements

Aagten-Murphy, D.; Szinte, M.; Deubel, H.

10.1101/853739 — neuroscience — Posted on 2019-11-25

722 On the spillover effect and optimal size of marine reserves

Takashina, N.

10.1101/853879 — ecology — Posted on 2019-11-25

723 MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics

Levy Karin, E.; Mirdita, M.; Soeding, J.

10.1101/851964 — bioinformatics — Posted on 2019-11-25

724 Emergent honeycomb topology of the leaf spongy mesophyll

Borsuk, A.; Roddy, A.; Theroux-Rancourt, G.; Brodersen, C.

10.1101/852459 — plant biology — Posted on 2019-11-25

725 Loading effects on the performance of needle free jet injections in different skin models

Rohilla, P.; Lawal, I.; Le Blanc, A.; O'Brien, V.; Weeks, C.; Tran, W.; Rane, Y.; Khusnatdinov, E.; Marston, J.

10.1101/853481 — bioengineering — Posted on 2019-11-25

726 Distinct Processing of Selection and Execution Errors in Neural Signatures of Outcome Monitoring

Mushtaq, F.; McDougle, S. D.; Craddock, M. P.; Parvin, D.; Brookes, J.; Schaefer, A.; Mon-Williams, M.; Taylor, J. A.; Ivry, R. B.

10.1101/853317 — neuroscience — Posted on 2019-11-25

727 Distinct neural contributions to metacognition for detecting (but not discriminating) visual stimuli

Mazor, M.; Friston, K.; Fleming, S. M.

10.1101/853366 — neuroscience — Posted on 2019-11-25

728 A decision-time account of individual variability in context-dependent orientation estimation

Dekel, R.; Sagi, D.

10.1101/853754 — neuroscience — Posted on 2019-11-25

729 Rapid diagnosis of SCA36 in a three-generation family using short-read whole genome sequencing data

Rafehi, H.; Szmulewicz, D. J.; Pope, K.; Wallis, M.; Christodoulou, J.; White, S. M.; Delatycki, M.; Lockhart, P. J.; Bahlo, M.

10.1101/851675 — genomics — Posted on 2019-11-25

730 Selection on a pleiotropic color gene block underpins early differentiation between two warbler species

Wang, S.; Rohwer, S.; de Zwaan, D. R.; Toews, D. P. L.; Lovette, I. J.; Mackenzie, J.; Irwin, D. E.

10.1101/853390 — evolutionary biology — Posted on 2019-11-25

731 Kinship does not predict the structure of a shark social network

Mourier, J.; Planes, S.

10.1101/853689 — animal behavior and cognition — Posted on 2019-11-25

732 Single rod-shaped cell fluctuations from stochastic surface/volume growth rates

Romano, O. M.; Cosentino-Lagomarsino, M.

10.1101/852624 — systems biology — Posted on 2019-11-25

733 Tuning of feedforward control enables stable muscle force length dynamics after loss of autogenic proprioceptive feedback

Gordon, J. C.; Holt, N. C.; Biewener, A. A.; Daley, M. A.

10.1101/851626 — physiology — Posted on 2019-11-25

734 The direction of associations: prior knowledge promotes hippocampal separation, but cortical assimilation

Bein, O.; Reggev, N.; Maril, A.

10.1101/851204 — neuroscience — Posted on 2019-11-25

735 CORE GREML: Estimating covariance between random effects in linear mixed models for genomic analyses of complex traits

Zhou, X.; Im, H. K.; Lee, S. H.

10.1101/853515 — genetics — Posted on 2019-11-25

736 Stable phenotypic effects of an unstable deleterious Wolbachia infection

Ross, P. A.; Axford, J. K.; Callahan, A. G.; Richardson, K. M.; Hoffmann, A. A.

10.1101/853473 — evolutionary biology — Posted on 2019-11-25

737 INHIBITION OF GONADOTROPIN-STIMULATED STEROIDOGENESIS BY THE ERK CASCADE

Seger, R.; Hanoch, T.; Rosenberg, R.; Dantes, A.; Merz, W.; Strauss, J. F.; Amsterdam, A.

10.1101/853648 — cell biology — Posted on 2019-11-25

738 Wengan: Efficient and high quality hybrid de novo assembly of human genomes

Di Genova, A.; Buena-Atienza, E.; Ossowski, S.; Sagot, M.-F.

10.1101/840447 — bioinformatics — Posted on 2019-11-25

739 Cytochrome cM downscales photosynthesis under photomixotrophy in Synechocystis sp. PCC 6803

Solymosi, D.; Muth-Pawlak, D.; Nikkanen, L.; Fitzpatrick, D.; Vasudevan, R.; Howe, C.; Lea-Smith, D. J.; Allahverdiyeva, Y.

10.1101/853416 — plant biology — Posted on 2019-11-25

740 Enabling FIB-SEM Systems for Large Volume Connectomics and Cell Biology

Xu, C. S.; Pang, S.; Hayworth, K. J.; Hess, H. F.

10.1101/852863 — neuroscience — Posted on 2019-11-25

741 Predicting Latent Links from Incomplete Network Data Using Exponential Random Graph Model with Outcome Misclassification

Wu, Q.; Chen, S.

10.1101/852798 — neuroscience — Posted on 2019-11-25

742 The genomic underpinnings of oscillatory biomarkers supporting successful memory encoding in humans

Berto, S.; Fontenot, M.; Sager, S.; Ayhan, F.; Caglayan, E.; Kulkarni, A.; Douglas, C.; Tamminga, C. A.; Lega, B. C.; Konopka, G.

10.1101/853531 — genomics — Posted on 2019-11-25

743 Climatic niche change of fish is faster at high latitude and in marine environments

Bourgeaud, L.; Rolland, J.; Carvajal-Quintero, J. D.; Jezequel, C.; Tedesco, P. A.; Murienne, J.; Grenouillet, G.

10.1101/853374 — evolutionary biology — Posted on 2019-11-25

744 A simple computer vision algorithm as a clinical aid for the pathologist

Lazaro-Guevara, J. M.; Garrido, K. M.; Flores-Robles, B. J.; Murga, A. E.

10.1101/853325 — bioinformatics — Posted on 2019-11-25

745 Deep generative model embedding of single-cell RNA-Seq profiles on hyperspheres and hyperbolic spaces

Ding, J.; Regev, A.

10.1101/853457 — bioinformatics — Posted on 2019-11-25

746 Comprehensive post mortem brain samples analysis detects global reduction of multiple proteasome subunits expression in schizophrenia

Hertzberg, L.; Maggio, N.; Muler, I.; Yitzhaky, A.; Majer, M.; Haroutunian, V.; Katsel, P.; Domany, E.; Weiser, M.

10.1101/853226 — neuroscience — Posted on 2019-11-25

747 Raw milk for human consumption may carry antimicrobial resistance genes

Toth, A. G.; Csabai, I.; Kriko, E.; Tozser, D.; Maroti, G.; Patai, A.; Makrai, L.; Szita, G.; Solymosi, N.

10.1101/853333 — genomics — Posted on 2019-11-25

748 A New approximate matching compression algorithm for DNA sequences

Lazaro-Guevara, J. M.; Garrido, K. M.

10.1101/853358 — bioinformatics — Posted on 2019-11-25

749 Mid-Infrared Spectroscopic Analysis of Raw Milk to Predict the Blood Plasma Non-Esterified Fatty Acid Concentration in Dairy Cows

Aernouts, B.; Adriaens, I.; Olivares, J. D.; Saeys, W.; Mäntysaari, P.; Kokkonen, T.; Mehtiö, T.; Kajava, S.; Lidauer, P.; Lidauer, M.; Pastell, M.

10.1101/853127 — bioengineering — Posted on 2019-11-25

750 Glyoxylic acid overcomes 1-MCP-induced blockage of fruit ripening in Pyrus communis L. var. DAnjou

Hewitt, S. L.; Dhingra, A.

10.1101/852954 — plant biology — Posted on 2019-11-25

751 Differences in in vitro responses of the hypothalamo-pituitary-gonadal hormonal axis between low and high egg producing turkey hens

Brady, K.; Long, J. A.; Liu, H.-C.; Porter, T. E.

10.1101/854679 — physiology — Posted on 2019-11-25

752 Thiamethoxam exposure in honey bees deregulates short ORF gene expression in the brain and compromises the immune response

Decio, P.; Ustaoglu, P.; Derecka, K.; Scocchia, D.; Hardy, I.; Roat, T.; Malaspina, O.; Mongan, N.; Stoger, R.; Soller, M.

10.1101/853291 — pharmacology and toxicology — Posted on 2019-11-25

753 Cell therapy as a new approach on hepatic fibrosis of murine model of Schistosoma mansoni infection

Alsulami, M.

10.1101/853143 — pathology — Posted on 2019-11-25

754 Atypical spatial frequency dependence of visual metacognition among schizophrenia patients

Koizumi, A.; Hori, T.; Maniscalco, B.; Hayase, M.; Mishima, R.; Kawashima, T.; Miyata, J.; Aso, T.; Lau, H.; Takahashi, H.; Amano, K.

10.1101/853135 — neuroscience — Posted on 2019-11-25

755 NIR-II fluorescence microscopic imaging of cortical vasculature in non-human primates

Cai, Z.; Zhu, L.; Wang, M.; Roe, A. W.; Xi, W.; Qian, J.

10.1101/853200 — neuroscience — Posted on 2019-11-25

756 Mate discrimination among subspecies through a conserved olfactory pathway

Khallaf, M. A.; Auer, T. O.; Grabe, V.; Depetris-Chauvin, A.; Ammagarahalli, B.; Zhang, D.-D.; Lavista-Llanos, S.; Kaftan, F.; Weissflog, J.; Matzkin, L. M.; Rollmann, S.; Loefstedt, C.; Svatos, A.; Dweck, H. K.; Sachse, S.; Benton, R.; Hansson, B. S.; Knaden, M.

10.1101/854364 — neuroscience — Posted on 2019-11-25

757 Co-incubation of dsRNA reduces proportion of viable spores of Ascosphaera apis, a honey bee fungal pathogen

Tauber, J. P.; Einspanier, R.; Evans, J. D.; McMahon, D. P.

10.1101/852699 — microbiology — Posted on 2019-11-25

758 Rapid antimicrobial susceptibility test using spatiotemporal analysis of laser speckle dynamics of bacterial colonies

Han, S.; No, H.; Baek, Y.; Park, H.; Lee, K.; Yang, S.; Park, Y.

10.1101/853168 — microbiology — Posted on 2019-11-25

759 Drivers of phyllosphere microbial functional diversity in a neotropical forest

Lajoie, G.; Maglione, R.; Kembel, S. W.

10.1101/851485 — ecology — Posted on 2019-11-25

760 Kappa (κ): Analysis of Curvature in Biological Image Data using B-splines

Mary, H.; Brouhard, G.

10.1101/852772 — bioinformatics — Posted on 2019-11-25

761 Ectomycorrhizal fungi induce systemic resistance against insects on a non-mycorrhizal plant in a CERK1-dependent manner

Vishwanathan, K.; Zienkiewicz, K.; Liu, Y.; Janz, D.; Feussner, I.; Polle, A.; Haney, C. H.

10.1101/852640 — plant biology — Posted on 2019-11-25

762 Correcting for physical distortions in visual stimuli improves reproducibility in zebrafish neuroscience.

Dunn, T. W.; Fitzgerald, J. E.

10.1101/852962 — neuroscience — Posted on 2019-11-25

763 The heading direction circuit of two insect species

Pisokas, I.; Heinze, S.; Webb, B.

10.1101/854521 — neuroscience — Posted on 2019-11-25

764 Economic, social, and physiological resilience predict brain structure and cognitive performance in 9 - 10-year-old children

Gonzalez, M. R.; Palmer, C. E.; Uban, K. A.; Jernigan, T. L.; Thompson, W. K.; Sowell, E. R.

10.1101/852988 — neuroscience — Posted on 2019-11-25

765 When is a control not a control? Reactive microglia occur throughout the control contralateral visual pathway in experimental glaucoma

Tribble, J. R.; Kokkali, E.; Otmani, A.; Plastino, F.; Lardner, E.; Vohra, R.; Kolko, M.; Andre, H.; Morgan, J. E.; Williams, P. A.

10.1101/853275 — neuroscience — Posted on 2019-11-25

766 Neglecting model selection alters phylogenetic inference

Gerth, M.

10.1101/849018 — evolutionary biology — Posted on 2019-11-25

767 Transient Nodal signalling in left precursors coordinates opposed asymmetries shaping the heart loop

Desgrange, A.; Le Garrec, J.-F.; Bernheim, S.; Holm Bonnelykke, T.; Meilhac, S.

10.1101/854463 — developmental biology — Posted on 2019-11-25

768 Insilico Analysis Reveal Three novel nsSNPs May effect on GM2A protein Leading to AB variant of GM2 gangliosidosis

Abdelhameed, T. A.; Mustafa, M. I.; Abdelrahman, D. N.; Abdelrhman, F. A.; Hassan, M. A.

10.1101/853085 — bioinformatics — Posted on 2019-11-25

769 Dimensional neuroimaging: (Internet) Gaming Disorder symptoms according to the WHO and APA frameworks associate with lower striatal volume

Zhou, X.; Wu, R.; Liu, C.; Kou, J.; Chen, Y.; Pontes, H. M.; Yao, D.; Kendrick, K. M.; Becker, B.; Montag, C.

10.1101/852855 — neuroscience — Posted on 2019-11-25

770 Comprehensive Analysis of HEXB Protein Reveal Forty Two Novel nsSNPs That May Lead to Sandhoff disease (SD) Using Bioinformatics

Abdelhameed, T. A.; Gasmelseed, M. M.; Mustafa, M. I.; Abdelrahman, D. N.; Abdelrhman, F. A.; Hassan, M. A.

10.1101/853077 — bioinformatics — Posted on 2019-11-25

771 Diversified RACE Sampling on Data Streams Applied to Metagenomic Sequence Analysis

Coleman, B.; Geordie, B.; Chou, L.; Elworth, R. A. L.; Treangen, T. J.; Shrivastava, A.

10.1101/852889 — bioinformatics — Posted on 2019-11-25

772 Divergent strategies for learning in males and females

Chen, C. S.; Ebitz, R. B.; Bindas, S.; Redish, A. D.; Hayden, B.; Grissom, N. M.

10.1101/852830 — animal behavior and cognition — Posted on 2019-11-25

773 Identifying inhibitors of epithelial-mesenchymal plasticity using a network topology based approach

Hari, K.; Sabuwala, B.; Subramani, B. V.; La Porta, C.; Zapperi, S.; Font-Clos, F.; Jolly, M. K.

10.1101/854307 — systems biology — Posted on 2019-11-25

774 Ornithine capture by a translating ribosome controls bacterial polyamine synthesis

Herrero del Valle, A.; Seip, B.; Cervera-Marzal, I.; Sacheau, G.; Seefeldt, A. C.; Innis, C. A.

10.1101/604074 — microbiology — Posted on 2019-11-25

775 The nuclear transport receptor TNPO1 binds macrophage immunometabolism regulator MACIR via a PY-NLS motif

McGauran, G.; Dorris, E. R.; Borza, R.; Morgan, N.; Shields, D. C.; Matallanas, D.; Wilson, A. G.; O'Connell, D. J.

10.1101/841999 — biochemistry — Posted on 2019-11-25

776 Modulation of promoter occupancy dictates the transcriptional response to graded BMP signalling levels in the Drosophila embryo

Hoppe, C.; Bowles, J.; Minchington, T. G.; Sutcliffe, C.; Upadhyai, P.; Rattray, M.; Ashe, H. L.

10.1101/837179 — developmental biology — Posted on 2019-11-25

777 Directed connectivity between primary and premotor areas underlying ankle force control in young and older adults

Spedden, M. E.; Beck, M. M.; Christensen, M. S.; Dietz, M. J.; Karabanov, A. N.; Geertsen, S. S.; Nielsen, J. B.; Lundbye-Jensen, J.

10.1101/804450 — neuroscience — Posted on 2019-11-25

778 Pleiotropy or linkage? Their relative contributions to the genetic correlation of quantitative traits and detection by multi-trait GWA studies

Chebib, J.; Guillaume, F.

10.1101/656413 — evolutionary biology — Posted on 2019-11-25

779 Niche complementarity among pollinators increases community-level plant reproductive success

Magrach, A.; Molina, F. P.; Bartomeus, I.

10.1101/629931 — ecology — Posted on 2019-11-25

780 In-depth profiling of calcite precipitation by environmental bacteria reveals fundamental mechanistic differences with relevance to application

Reeksting, B. J.; Hoffmann, T. D.; Tan, L.; Paine, K.; Gebhard, S.

10.1101/850883 — microbiology — Posted on 2019-11-25

781 Synthesis and Characterisation of Aqueous Haemoglobin-based Microcapsules Coated by Genipin-Cross-Linked Albumin

Schakowski, K. M.; Linders, J.; Ferenz, K. B.; Kirsch, M.

10.1101/818278 — biochemistry — Posted on 2019-11-25

782 A shared genetic basis for personality traits and local cortical grey matter structure?

Valk, S. L.; Hoffstaedter, F.; Camilleri, J.; Kochunov, P.; Yeo, B. T. T.; Eickhoff, S. B.

10.1101/645945 — neuroscience — Posted on 2019-11-25

783 On the inference of a southern origin of the North American firefly Photinus pyralis

Catalan, A.; Hoehna, S.; Lower, S. E.; Duchen, P.

10.1101/851139 — evolutionary biology — Posted on 2019-11-25

784 A novel fusion based on the evolutionary features for protein fold recognition using support vector machines

Refahi, M. S.; Mir, A.; Nasiri, J. A.

10.1101/845727 — bioinformatics — Posted on 2019-11-25

785 DeepACSON: Automated Segmentation of White Matter in 3D Electron Microscopy

Abdollahzadeh, A.; Belevich, I.; Jokitalo, E.; Sierra, A.; Tohka, J.

10.1101/828541 — neuroscience — Posted on 2019-11-25

786 A lifespan program of mouse synaptome architecture

Cizeron, M.; Qiu, Z.; Koniaris, B.; Gokhale, R.; Komiyama, N.; Fransen, E.; Grant, S.

10.1101/838458 — neuroscience — Posted on 2019-11-25

787 Emergence of opposite neurons in a decentralized firing-rate model of multisensory integration

Niu, X.; Chau, H. Y.; Lee, T. S.; Zhang, W.-H.

10.1101/845743 — neuroscience — Posted on 2019-11-25

788 Multi-level analysis of reproduction in an Antarctic midge identifies female and male accessory gland products that are altered by larval stress and impact progeny viability

Finch, G.; Perrieta, C.; Davis, B.; Nandyal, S.; Rosendale, A. J.; Holmes, C. J.; Gantz, J. D.; Spacht, D.; Bailey, S. T.; Chen, X.; Oyen, K.; Didion, E. M.; Chakraborty, S.; Lee, R. E.; Denlinger, D. L.; Matter, S.; Attardo, G. M.; Weirauch, M. T.; Benoit, J.

10.1101/796797 — genomics — Posted on 2019-11-25

789 Nanoscale mapping of chromatin dynamics in living cells

Shaban, H. A.; Barth, R.; Bystricky, K.

10.1101/405969 — biophysics — Posted on 2019-11-25

790 Immune checkpoint proteins are conserved across 160 million years of evolution and are expressed on transmissible cancers

Flies, A. S.; Darby, J. M.; Lennard, P. R.; Murphy, P. R.; Ong, C. E. B.; Pinfold, T. L.; Lyons, A. B.; Woods, G. M.; Patchett, A. L.

10.1101/831404 — immunology — Posted on 2019-11-25

791 SNPector: SNP inspection tool for diagnosing gene pathogenicity and drug response in a naked sequence

Habib, P.; Al Samman, A. S.; Hamwieh, A.; Shereif, G. A.

10.1101/834580 — bioinformatics — Posted on 2019-11-25

792 The user's guide to comparative genomics with EnteroBase, including case studies on transmissions of micro-clades of Salmonella, the phylogeny of ancient and modern Yersinia pestis genomes, and the core genomic diversity of all Escherichia.

Zhou, Z.; Alikhan, N.-F.; Mohamed, K.; Fan, Y.; the Agama Study Group, ; Achtman, M.

10.1101/613554 — microbiology — Posted on 2019-11-25

793 Changes in brain microRNAs are associated with social evolution in bees

Kapheim, K. M.; Jones, B. M.; Sovik, E.; Stolle, E.; Waterhouse, R. M.; Bloch, G.; Ben-Shahar, Y.

10.1101/730317 — genomics — Posted on 2019-11-25

794 A young age of subspecific divergence in the desert locust Schistocerca gregaria

Chapuis, M.-P.; Raynal, L.; Plantamp, C.; Meynard, C. N.; Blondin, L.; Marin, J.-M.; Estoup, A.

10.1101/671867 — evolutionary biology — Posted on 2019-11-25

795 Metabolic trade-offs expose unforeseen benefits of plasmids carriage

Reding Roman, R. C.

10.1101/810259 — evolutionary biology — Posted on 2019-11-25

796 APEC: an accesson-based method for single-cell chromatin accessibility analysis

Li, B.; Li, Y.; Li, K.; Zhu, L.; Yu, Q.; Cai, P.; Fang, J.; Zhang, W.; Du, P.; Jiang, C.; Qu, K.

10.1101/646331 — bioinformatics — Posted on 2019-11-25

797 Humanization of SRGAP2C expression increases cortico-cortical connectivity and reliability of sensory-evoked responses in the mouse brain

Schmidt, E. R. E.; Zhao, H. T.; Hillman, E. M. C.; Polleux, F.

10.1101/852970 — neuroscience — Posted on 2019-11-24

798 Suppression of DSB Formation by Polβ in Active DNA Demethylation is Required for Postnatal Hippocampal Development

Uyeda, A.; Onishi, K.; Hirayama, T.; Hattori, S.; Miyakawa, T.; Yagi, T.; Yamamoto, N.; Sugo, N.

10.1101/852053 — neuroscience — Posted on 2019-11-24

799 Ectopic HCN4 expression drives mTOR-dependent epilepsy

Hsieh, L.; Wen, J.; Nguyen, L.; Zhang, L.; Torres-Reveron, J.; Spencer, D.; Bordey, A.

10.1101/853820 — neuroscience — Posted on 2019-11-24

800 BAG3 Pro209 mutants associated with myopathy and neuropathy sequester chaperones of the CASA-complex in aggresomes

Adriaenssens, E.; Tedesco, B.; Mediani, L.; Asselbergh, B.; Crippa, V.; Antoniani, F.; Carra, S.; Poletti, A.; Timmerman, V.

10.1101/853804 — cell biology — Posted on 2019-11-24

801 Push-to-open: The Gating Mechanism of the Tethered Mechanosensitive Ion Channel NompC

Wang, Y.; Guo, Y.; Liu, C.; Wang, L.; Zhang, A.; Yan, Z.; Song, C.

10.1101/853721 — biophysics — Posted on 2019-11-24

802 Fibrinolytic activity of matrix metalloprotease-1

Kumar, L.; Planas-Iglesias, J.; Harms, C.; Kamboj, S.; Klein-Seetharaman, J.; Sarkar, S. K.

10.1101/853796 — biophysics — Posted on 2019-11-24

803 Molecular mechanisms behind global distribution of earthworm revealed by the genome

Wang, X.; Zhang, Y.; Zhang, Y.; Kang, M.; Li, Y.; James, S. W.; Yang, Y.; Bi, Y.; Zhou, X.; Jiang, H.; Zhao, Y.; Sun, Z.

10.1101/853267 — genomics — Posted on 2019-11-24

804 A versatile high throughput screening platform for plant metabolic engineering highlights the major role of ABI3 in lipid metabolism regulation

Pouvreau, B.; Blundell, C.; Vohra, H.; Zwart, A. B.; Arndell, T.; Singh, S.; Vanhercke, T.

10.1101/853606 — plant biology — Posted on 2019-11-24

805 Spexin and a novel cichlid-specific spexin paralog both inhibit FSH and LH through a specific galanin receptor (Galr2b) in tilapia

Cohen, Y.; Hausken, K.; Bonfil, Y.; Gutnick, M.; Levavi-Sivan, B.

10.1101/853622 — molecular biology — Posted on 2019-11-24

806 The host antiviral ribonuclease L protein supports Zika virus replication factory formation to enhance infectious virus production

Whelan, J. N.; Hatterschide, J.; Renner, D. M.; Dong, B.; Silverman, R. H.; Weiss, S. R.

10.1101/852194 — microbiology — Posted on 2019-11-24

807 The ecology of cancer differentiation therapy I: non-spatial models

Sole, R.; Aguade, G.

10.1101/853002 — cancer biology — Posted on 2019-11-24

808 NERDSS: a non-equilibrium simulator for multibody self-assembly at the cellular scale

Varga, M. J.; Loggia, S.; Fu, Y.; Yogurtcu, O. N.; Johnson, M. E.

10.1101/853614 — biophysics — Posted on 2019-11-24

809 High Throughput Screening at the Membrane Interface Reveals New Inhibitors of Amyloid-β

Cox, S.; Lam, B.; Prasad, A.; Marietta, H.; Stander, N.; Joel, J.; Sahoo, B.; Guo, F.; Stoddard, A.; Ivanova, M.; Ramamoorthy, A.

10.1101/853499 — biochemistry — Posted on 2019-11-24

810 A screening platform based on epitope editing for drug discovery

Zhu, B.; Yang, J.; Van, R.; Ran, K.; Yin, K.; Liang, Y.; Shen, N.; Yin, W.; Choi, S. H.; Lu, Y.; Wang, C.; Shao, Y.; Tanzi, R. E.; Zhang, C.; Cheng, Y.; Zhang, Z.; Ran, C.

10.1101/838896 — biochemistry — Posted on 2019-11-24

811 An Integrative Network-based Analysis Reveals Gene Networks, Biological Mechanisms, and Novel Drug Targets in Alzheimer's Disease

Gerring, Z. F.; Gamazon, E. R.; White, A.; Derks, E. M.

10.1101/853580 — genetics — Posted on 2019-11-24

812 A novel, ultrasensitive approach for quantitative carbohydrate composition and linkage analysis using LC-ESI ion trap tandem mass spectrometry

Alagesan, K.; Varon Silva, D.; Seeberger, P. H.; Kolarich, D.

10.1101/853036 — biochemistry — Posted on 2019-11-24

813 14-3-3ζ over-expression improves tolerance to acute and chronic cold exposure in male mice via thermogenic-dependent and -independent mechanisms

Diallo, K.; Dussault, S.; Lopez, A. F.; Rivard, A.; Lim, G.

10.1101/853184 — physiology — Posted on 2019-11-24

814 Evolutionary Stalling in the Optimization of the Translation Machinery

Venkataram, S.; Monasky, R.; Sikaroodi, S. H.; Kryazhimskiy, S.; Kacar, B.

10.1101/850644 — evolutionary biology — Posted on 2019-11-24

815 Small Molecule Induced Toxic Human-IAPP Species Characterized by NMR

Cox, S.; Rodriguez Camargo, D.; Lee, Y.-H.; Ivanova, M. I.; Padmini, V.; Reif, B.; Ramamoorthy, A.

10.1101/853549 — biophysics — Posted on 2019-11-24

816 Learning to Fold RNAs in Linear Time

Chowdhury, F. A. R. R.; Zhang, H.; Huang, L.

10.1101/852871 — bioinformatics — Posted on 2019-11-24

817 Reference-free deconvolution of complex DNA methylation data - a detailed protocol

Scherer, M.; Nazarov, P. V.; Toth, R.; Sahay, S.; Kaoma, T.; Maurer, V.; Plass, C.; Lengauer, T.; Walter, J.; Lutsik, P.

10.1101/853150 — bioinformatics — Posted on 2019-11-24

818 Structural modularity of the XIST ribonucleoprotein complex

Lu, Z.; Guo, J. K.; Wei, Y.; Dou, D. R.; Zarnegar, B.; Ma, Q.; Li, R.; Zhao, Y.; Liu, F.; Choudhry, H.; Khavari, P. A.; Chang, H.

10.1101/837229 — molecular biology — Posted on 2019-11-24

819 NLRP7 Plays A Functional Role in Regulating BMP4 Signaling During Differentiation of Patient-Derived Trophoblasts

Garipcan, A.; Ozcimen, B.; Suder, I.; Ulker, V.; Onder, T. T.; Ozoren, N.

10.1101/850420 — developmental biology — Posted on 2019-11-24

820 Phase variation-based biosensors for bacteriophage detection and phage receptor discrimination

Olivenza, D. R.; Casadesus, J.; ANSALDI, M.

10.1101/851808 — microbiology — Posted on 2019-11-24

821 NorK, a novel norfloxacin efflux pump in Staphylococcus aureus

Briaud, P.; Baude, J.; Bastien, S.; Camus, L.; Vandenesch, F.; Moreau, K.

10.1101/850768 — microbiology — Posted on 2019-11-24

822 Emergence of collective oscillations in adaptive cells

Wang, S.-W.; Tang, L.-H.

10.1101/421586 — biophysics — Posted on 2019-11-24

823 Neighbor GWAS: incorporating neighbor genotypic identity into genome-wide association studies of field herbivory on Arabidopsis thaliana

Sato, Y.; Yamamoto, E.; Shimizu, K. K.; Nagano, A. J.

10.1101/845735 — genetics — Posted on 2019-11-24

824 Non-uniform distribution of myosin-mediated forces governs red blood cell membrane curvature through tension modulation

Alimohamadi, H.; S. Smith, A.; Nowak, R.; M. Fowler, V.; Rangamani, P.

10.1101/668582 — biophysics — Posted on 2019-11-24

825 The nuclear transport receptor TNPO1 binds macrophage immunometabolism regulator MACIR via a PY-NLS motif

McGauran, G.; Dorris, E. R.; Borza, R.; Morgan, N.; Shields, D. C.; Matallanas, D.; Wilson, A. G.; o'connell, d. j.

10.1101/841999 — biochemistry — Posted on 2019-11-24

826 Calcium-induced calcium release in noradrenergic neurons of the locus coeruleus

Kawano, H.; Mitchell, S. B.; Koh, J.-Y.; Goodman, K. M.; Harata, N. C.

10.1101/853283 — neuroscience — Posted on 2019-11-23

827 Revealing architectural order with quantitative label-free imaging and deep learning

Guo, S.-M.; Yeh, L.-H.; Folkesson, J.; Ivanov, I.; Krishnan, A. P.; Keefe, M. G.; Shin, D.; Chhun, B.; Cho, N.; Leonetti, M.; Nowakowski, T. J.; Mehta, S. B.

10.1101/631101 — biophysics — Posted on 2019-11-24

828 Different principles govern different scales of brain folding

Mallela, A. N.; Deng, H.; Bush, A.; Goldschmidt, E.

10.1101/851550 — neuroscience — Posted on 2019-11-23

829 The lhfpl5 ohnologs lhfpl5a and lhfpl5b are required for mechanotransduction in distinct populations of sensory hair cells in zebrafish.

Erickson, T.; Pacentine, I. V.; Venuto, A.; Clemens, R.; Nicolson, T.

10.1101/793042 — neuroscience — Posted on 2019-11-23

830 Neural activity during a simple reaching task in macaques is counter to theories of basal ganglia-thalamic communication

Schwab, B. C.; Kase, D.; Zimnik, A.; Rosenbaum, R.; Codianni, M. G.; Rubin, J. E.; Turner, R. S.

10.1101/546598 — neuroscience — Posted on 2019-11-23

831 Intra-Species Differences in Population Size shape Life History and Genome Evolution

Willemsen, D.; Cui, R.; Reichard, M.; Valenzano, D. R.

10.1101/852368 — evolutionary biology — Posted on 2019-11-23

832 Quantifying the prevalence of assortative mating in a human population

Jaffe, K.

10.1101/848911 — evolutionary biology — Posted on 2019-11-23

833 SciApps: A Cloud-Based Platform for Analyses and Distribution of the MaizeCODE data

Wang, L.

10.1101/852269 — bioinformatics — Posted on 2019-11-23

834 Gene expression heterogeneity during brain development and aging: temporal changes and functional consequences

Isildak, U.; Somel, M.; Thornton, J.; Donertas, H. M.

10.1101/595249 — genomics — Posted on 2019-11-23

835 Manual dexterity of mice during food-handling involves the thumb and a set of fast basic movements

Barrett, J. M.; Raineri Tapies, M. G.; Shepherd, G. M. G.

10.1101/852350 — animal behavior and cognition — Posted on 2019-11-23

836 Transcranial Direct current stimulation does not modulate performance on a tongue twister task

Wiltshire, C. E. E.; Watkins, K. E.

10.1101/852483 — neuroscience — Posted on 2019-11-23

837 Improved inference and prediction of bacterial genotype-phenotype associations using pangenome-spanning regressions

Lees, J. A.; Mai, T. T.; Galardini, M.; Wheeler, N. E.; Corander, J.

10.1101/852426 — microbiology — Posted on 2019-11-23

838 A novel pH-regulated, unusual 603 bp overlapping protein coding gene pop is encoded antisense to ompA in Escherichia coli O157:H7 (EHEC)

Zehentner, B.; Ardern, Z.; Kreitmeier, M.; Scherer, S.; Neuhaus, K.

10.1101/852251 — microbiology — Posted on 2019-11-23

839 Estimating animal density in three dimensions using capture-frequency data from remote detectors

Vargas Soto, J. S.; Castaneda, R. A.; Mandrak, N. E.; Molnar, P. K.

10.1101/852475 — ecology — Posted on 2019-11-23

840 A novel transplantable model of lung cancer associated tissue loss and disrupted muscle regeneration

Arneson, P. C.; Ducharme, A. M.; Doles, J. D.

10.1101/852442 — cancer biology — Posted on 2019-11-23

841 Hormonal control of motivational circuitry orchestrates the transition to sexuality in Drosophila

Zhang, S. X.; Glantz, E. H.; Rogulja, D.; Crickmore, M. A.

10.1101/852335 — neuroscience — Posted on 2019-11-23

842 Model-based inference of punctuated molecular evolution

Manceau, M.; Marin, J.; Morlon, H.; Lambert, A.

10.1101/852343 — evolutionary biology — Posted on 2019-11-23

843 Spatial organization of the mouse chromosomes influences the landscape of intrachromosomal exchange aberration breakpoints

Eidelman, Y.; Salnikov, I.; Slanina, S.; Andreev, S.

10.1101/852277 — cancer biology — Posted on 2019-11-23

844 The neural computation of human goal-directed behavior in complex motivational states

Saulin, A.; Horn, U.; Lotze, M.; Kaiser, J.; Hein, G.

10.1101/851931 — neuroscience — Posted on 2019-11-23

845 Microtubule Nucleation by Single Human γTuRC in a Partly Open Asymmetric Conformation

Consolati, T.; Locke, J.; Roostalu, J.; Asthana, J.; Lim, W. M.; Gannon, J.; Martino, F.; Costa, A.; Surrey, T.

10.1101/853218 — biochemistry — Posted on 2019-11-23

846 Viscoelastic properties of ECM-rich embryonic microenvironments

Akos, Z.; Isai, D. G.; Rajasingh, S.; Kosa, E.; Ghazvini, S.; Dhar, P.; Czirok, A.

10.1101/853044 — developmental biology — Posted on 2019-11-23

847 Nucleosides rescue replication-mediated genome instability of human pluripotent stem cells

Halliwell, J. A.; Frith, T. J. R.; Price, C. J.; Laing, O.; Bower, O. J.; Stavish, D.; Gokhale, P.; Hewitt, Z.; El-Khamisy, S.; Barbaric, I.; Andrews, P. W.

10.1101/853234 — cell biology — Posted on 2019-11-23

848 Visualizing a protonated RNA state that modulates microRNA-21 maturation

Baisden, J. T.; Boyer, J. A.; Zhao, B.; Zhang, Q.

10.1101/852822 — biophysics — Posted on 2019-11-23

849 Energy Expenditure during Cell Spreading Induces AMPK Activation and Regulates the Mechanoresponse of Stem Cells

Xie, J.; Bao, M.; Hu, X.; Koopman, W. J. H.; Huck, W. T. S.

10.1101/852400 — cell biology — Posted on 2019-11-23

850 Histone deacetylase 9 promoter hypomethylation associated with adipocyte dysfunction is a statin-related metabolic effect

Khamis, A.; Boutry, R.; Canouil, M.; Mathew, S.; Lobbens, S.; Crouch, H.; Andrew, T.; Abderrahmani, A.; Tamanini, F.; Froguel, P.

10.1101/849695 — cell biology — Posted on 2019-11-23

851 Nanopore sequencing undergoes catastrophic sequence failure at inverted duplicated DNA sequences

Spealman, P.; Burrell, J.; Gresham, D.

10.1101/852665 — genomics — Posted on 2019-11-23

852 Integrative genomic analysis unifying epigenetic inheritance in adaptation and canalization

Sharma, A.

10.1101/849620 — genomics — Posted on 2019-11-23

853 A novel fusion based on the evolutionary features for protein fold recognition using support vector machines

Refahi, M. S.; Mir, A.; Nasiri, J. A.

10.1101/845727 — bioinformatics — Posted on 2019-11-23

854 Comparative transcriptomics reveals domestication-associated features of Atlantic salmon lipid metabolism

Jin, Y.; Olsen, R. E.; Harvey, T. N.; Ostensen, M.-A.; Li, K.; Santi, N.; Vadstein, O.; Vik, J. O.; Sandve, S. R.; Olsen, Y.

10.1101/847848 — molecular biology — Posted on 2019-11-23

855 Large-scale transgenic Drosophila resource collections for loss- and gain-of-function studies

Zirin, J.; Hu, Y.; Liu, L.; Yang-Zhou, D.; Colbeth, R.; Yan, D.; Ewen-Campen, B.; Tao, R.; Vogt, E.; VanNest, S.; Cavers, C.; Villalta, C.; Comjean, A.; Sun, J.; Wang, X.; Jia, Y.; Zhu, R.; Peng, P.; Yu, J.; Shen, D.; Qiu, Y.; Ayisi, L.; Ragoowansi, H.; Fenton, E.; Efrem, S.; Parks, A.; Saito, K.; Kondo, S.; Perkins, L.; Mohr, S. E.; Ni, J.; Perrimon, N.

10.1101/852376 — genetics — Posted on 2019-11-23

856 Quantifying the prevalence of assortative mating in a human population

Jaffe, K.

10.1101/848911 — evolutionary biology — Posted on 2019-11-23

857 Molecular mechanism of microtubule nucleation from gamma-tubulin ring complex

Thawani, A.; Stone, H. A.; Shaevitz, J. W.; Petry, S.

10.1101/853010 — cell biology — Posted on 2019-11-23

858 Estimating mutual information under measurement error

Ma, C.; Kingsford, C.

10.1101/852384 — bioinformatics — Posted on 2019-11-23

859 A hydrogel beads based platform for single-cell phenotypic analysis and digital molecular detection

Zhu, Y.; Li, J.; Lin, X.; Huang, X.; Hoffmann, M. R.

10.1101/848168 — bioengineering — Posted on 2019-11-23

860 Different principles govern different scales of brain folding

Mallela, A. N.; Deng, H.; Bush, A.; Goldschmidt, E.

10.1101/851550 — neuroscience — Posted on 2019-11-23

861 Evolution of the gastrointestinal tract morphology and plasticity in cave-adapted Mexican tetra, Astyanax mexicanus

Riddle, M. R.; Damen, F.; Aspiras, A.; Tabin, J. A.; McGaugh, S.; Tabin, C.

10.1101/852814 — evolutionary biology — Posted on 2019-11-23

862 Odd-paired is a late-acting pioneer factor coordinating with Zelda to broadly regulate gene expression in early embryos

Koromila, T.; Gao, F.; Iwasaki, Y.; He, P.; Pachter, L. S.; Gergen, J. P.; Stathopoulos, A.

10.1101/853028 — developmental biology — Posted on 2019-11-23

863 A natural antisense to brain-derived neurotrophic factor impairs extinction of drug seeking

Youngson, N. A.; Castino, M. R.; Stuart, A.; Kershaw, K. A.; Holmes, N. M.; Waters, P. D.; Morris, K. V.; Clemens, K. J.

10.1101/851949 — neuroscience — Posted on 2019-11-23

864 In silico investigation of Y220C mutant p53 for lead design

Chowdhury, M. R.; Tiwari, A.; Dubey, G. P.

10.1101/820761 — bioinformatics — Posted on 2019-11-23

865 Direct-fit to nature: an evolutionary perspective on biological (and artificial) neural networks

Hasson, U.; Nastase, S. A.; Goldstein, A.

10.1101/764258 — neuroscience — Posted on 2019-11-23

866 A high-quality genome assembly of the North American Song Sparrow, Melospiza melodia.

Louha, S.; Ray, D. A.; Winker, K.; Glenn, T. C.

10.1101/850990 — genomics — Posted on 2019-11-23

867 The role of ATP hydrolysis in conformational changes of human P-glycoprotein in living cells

Futamata, R.; Ogasawara, F.; Ichikawa, T.; Kimura, Y.; Kioka, N.; Ueda, K.

10.1101/641225 — biochemistry — Posted on 2019-11-23

868 The Landscape of Mutations in Fumarate Hydratase

Shorthouse, D.; Hall, M. W. J.; Hall, B. A.

10.1101/852392 — biophysics — Posted on 2019-11-23

869 CXCR4 and MIF are required for neutrophil extracellular trap release triggered by Plasmodium-infected erythrocytes

Rodrigues, D. S. A.; Prestes, E. B.; Silva, L. d. S.; Pinheiro, A. A. S.; Ribeiro, J. M. C.; Dicko, A.; Duffy, P. E.; Fried, M.; Francischetti, I. M. B.; Saraiva, E. M.; Paula-Neto, H. A.; Bozza, M. T.

10.1101/852574 — immunology — Posted on 2019-11-22

870 Confirmation of local transmission of Orientia tsutsugamushi during scrub typhus outbreaks in Nepal

Dhimal, M.; Dumre, S. P.; Sharma, G. N.; Khanal, P.; Ranabhat, K.; Shah, L. P.; Lal, B. K.; Jha, R.; Upadhyaya, B. P.; Acharya, B.; Shrestha, S. K.; Davidson, S. A.; Charoensinphon, P.; Karki, K. B.

10.1101/852533 — pathology — Posted on 2019-11-22

871 De novo identification of toxicants that cause irreparable damage to parasitic nematode intestinal cells

Jasmer, D. P.; Rosa, B. A.; Tyagi, R.; Bulman, C. A.; Beerntsen, B.; Urban, J. F.; Sakanari, J.; Mitreva, M.

10.1101/852525 — pathology — Posted on 2019-11-22

872 Bacteriophages can be used as infection control agents: A proof-of concept study involving anti-Acinetobacter baumannii phage

Hussain, A.; Manzoor, A.; Ullah, I.; Aziz, A.; Aziz, M.; Saeed, Q.

10.1101/852582 — microbiology — Posted on 2019-11-22

873 Deoxynivalenol Promotes Porcine Epidemic Diarrhea Virus Infection and Aggravates Gut Barrier Injury

Huang, K.; Liu, D.; Ge, L.; Wang, Q.; Su, J.; Chen, X.; Wang, C.

10.1101/852608 — immunology — Posted on 2019-11-22

874 Marine deforestation leads to widespread loss of ecosystem function

Edwards, M.; Konar, B.; Kim, J.-H.; Gabara, S.; Sullaway, G.; McHugh, T. A.; Spector, M.; Small, S. L.

10.1101/852541 — ecology — Posted on 2019-11-22

875 HIGH PREVALENCE OF STRONGYLOIDIASIS IN SPAIN: A HOSPITAL-BASED STUDY

Requena-Mendez, A.; Salas-Coronas, J.; Salvador, F.; Gomez-Junyent, J.; Villar-Garcia, J.; Santin, M.; Munoz, C.; Gonzalez-Cordon, A.; Cabezas-Fernandez, M. T.; Sulleiro, E.; Arenas, M. d. M.; Somoza, D.; Vazquez-Villegas, J.; Trevino, B.; Rodriguez, E.; Valls, M. E.; Subira, C.; Munoz, J.; Guillermos Girones, Philip Wikman, Manuel Jesus Soriano-Perez, Ana Belen Lozano,

10.1101/852558 — microbiology — Posted on 2019-11-22

876 Exposure to PM2.5 during pregnancy or lactation increases methylation while reducing the expression of Pdx1 and NEUROG3 in mouse pancreatic islets

LIMA, R.; Boico, V.; Peruca, G.; Rodrigues, K.; Yariwake, V.; Neto, D.; Costa, M. J.; Santos-Silva, J.; Anhe, G.; Saldiva, P.; Veras, M.; Prada, P.

10.1101/852509 — genomics — Posted on 2019-11-22

877 The Heparan Sulfate Proteoglycan Syndecan-1 Influences Local Bone Cell Communication via the RANKL/OPG Axis

Timmen, M.; Hidding, H.; Goette, M.; El Khassawna, T.; Kronenberg, D.; Stange, R.

10.1101/852590 — cell biology — Posted on 2019-11-22

878 Scalable Phylogenetic Profiling using MinHash Uncovers Likely Eukaryotic Sexual Reproduction Genes

Moi, D.; Kilchoer, L.; Aguilar, P. S.; Dessimoz, C.

10.1101/852491 — bioinformatics — Posted on 2019-11-22

879 Complementary Performances of Convolutional and Capsule Neural Networks on Classifying Microfluidic Images of Dividing Yeast Cells

Ghafari, M.; Clark, J.; Guo, H.; Yu, R.; Sun, Y.; Dang, W.; Qin, H.

10.1101/852566 — bioinformatics — Posted on 2019-11-22

880 Global distribution and evolution of Mycobacterium bovis lineages

Kraemer Zimpel, C.; Patane, J. S. L.; Guedes, A. C. P.; de Souza, R. F.; Pereira-Silva, T. T.; Soler Camargo, N. C.; de Souza Filho, A. F.; Ikuta, C. Y.; Ferreira Neto, J. S.; Setubal, J. C.; Heinemann, M. B.; Guimaraes, A. M. d. S.

10.1101/642066 — evolutionary biology — Posted on 2019-11-22

881 Extracting Super-resolution Structures inside a Single Molecule or Overlapped Molecules from One Blurred Image

Sheffield, E. Y.

10.1101/798934 — biophysics — Posted on 2019-11-22

882 CRISPR-Cas12a/Cpf1-assisted precise, efficient and multiplexed genome-editing in Yarrowia lipolytica

Yang, Z.; Edwards, H.; Xu, P.

10.1101/847905 — synthetic biology — Posted on 2019-11-22

883 Robust foreground detection in somatic copy number data

Deshpande, A. S.; Walradt, T.; Hu, Y.; Koren, A.; Imielinski, M.

10.1101/847681 — genomics — Posted on 2019-11-22

884 Multi-omics Visualization Platform: An extensible Galaxy plug-In for multi-omics data visualization and exploration

McGowan, T.; Johnson, J. E.; Kumar, P.; Sajulga, R.; Mehta, S.; Jagtap, P. D.; Griffin, T. J.

10.1101/842856 — bioinformatics — Posted on 2019-11-22

885 Huntingtin phosphorylation governs BDNF homeostasis and improves the phenotype of Mecp2 knockout mice

Ehinger, Y.; Bruyere, J.; Panayotis, N.; Abada, Y.-S.; Borloz, E.; Matagne, V.; Scaramuzzino, C.; Vitet, H.; Delatour, B.; Saidi, L.; Villard, L.; Saudou, F.; Roux, J.-C.

10.1101/643312 — neuroscience — Posted on 2019-11-22

886 The microRNA476a/RFL module regulates adventitious root formation through a mitochondria-dependent pathway in Populus

Luo, K.; Xu, C.; Tao, Y.; Fu, X.; Guo, L.; Xing, H.; Li, C.; Wang, X.; Su, H.; Hu, J.; Fan, D.; Chiang, V. L.

10.1101/852178 — plant biology — Posted on 2019-11-22

887 DO MUSCLE SYNERGIES IMPROVE OPTIMIZATION PREDICTION OF MUSCLE ACTIVATIONS DURING GAIT?

MICHAUD, F.; Shourijeh, M. S.; Cuadrado, J.; Fregly, B. J.

10.1101/851873 — neuroscience — Posted on 2019-11-22

888 Early-life environmental enrichment generates persistent individualized behavior in mice

Zocher, S.; Schilling, S.; Grzyb, A. N.; Adusumilli, V. S.; Bogado Lopes, J.; Guenther, S.; Overall, R. W.; Kempermann, G.

10.1101/851907 — neuroscience — Posted on 2019-11-22

889 Low membrane fluidity triggers lipid phase separation and protein segregation in vivo

Gorhbandt, M.; Lipski, A.; Baig, Z.; Walter, S.; Kurre, R.; Strahl, H.; Deckers-Hebestreit, G.

10.1101/852160 — microbiology — Posted on 2019-11-22

890 Dendritic cells require TMEM176A/B ion channels for optimal MHC II antigen presentation to naive CD4+ T cells

Lancien, M.; Bienvenu, G.; Gueno, L.; Salle, S.; Merieau, E.; Remy, S.; Even, A.; Moreau, A.; Molle, A.; Fourgeux, C.; Coulon, F.; Beriou, G.; Bouchet-Delbos, L.; Chiffoleau, E.; Kirstetter, P.; Chan, S.; Kerfoot, S.; Abdu Rahiman, S.; De Simone, V.; Matteoli, G.; Boncompain, G.; Perez, F.; Josien, R.; Poschmann, J.; Cuturi, M. C.; Louvet, C.

10.1101/851527 — immunology — Posted on 2019-11-22

891 microRNA profiling in the Weddell Seal suggests novel regulatory mechanisms contributing to diving adaptation

Penso Dolfin, L.; Haerty, W.; Hindle, A.; Di Palma, F.

10.1101/851394 — evolutionary biology — Posted on 2019-11-22

892 Histone chaperone Nucleophosmin regulates transcription of key genes involved in oral tumorigenesis.

Senapati, P.; Dey, S.; Sudarshan, D.; Bhattacharya, A.; G., S.; Das, S.; Sudevan, S.; Maliekal, T. T.; Kundu, T. K.

10.1101/852095 — biochemistry — Posted on 2019-11-22

893 A multiple-trait Bayesian Lasso for genome-enabled analysis and prediction of complex traits

GIANOLA, D.; FERNANDO, R. L.

10.1101/852749 — genetics — Posted on 2019-11-22

894 Protein adlayer thickness on colloidal nanoparticle determined by Rayleigh-Gans-Debye approximation

Yuan, L.; Zhai, Z.; Chen, L.; Ge, X.; Li, D.; Ge, G.

10.1101/852228 — biophysics — Posted on 2019-11-22

895 A nanopore based chromosome-level assembly representing Atlantic cod from the Celtic Sea.

Kent, M.; Kirubakaran, G. T.; Andersen, O.; Moser, M.; Arnyasi, M.; McGinnity, P.; Lien, S.

10.1101/852145 — genomics — Posted on 2019-11-22

896 Polyploidy in the adult Drosophila brain

Nandakumar, S.; Grushko, O.; Buttitta, L.

10.1101/852723 — developmental biology — Posted on 2019-11-22

897 Statistical power: implications for planning MEG studies

Chaumon, M.; Puce, A.; George, N.

10.1101/852202 — neuroscience — Posted on 2019-11-22

898 Localization of Ankyrin G, Nav and KCNQ1 channels to neuro-cardiac junctions.

Shcherbakova, O. G.

10.1101/852129 — neuroscience — Posted on 2019-11-22

899 Neural adaptation to accented speech: prefrontal cortex aids attunement in auditory cortices

Gwilliams, L.; Blanco-Elorrieta, E.; Marantz, A.; Pylkkanen, L.

10.1101/852616 — neuroscience — Posted on 2019-11-22

900 Ctcf Haploinsufficiency Mediates Intron Retention in A Tissue-specific Manner

Alharbi, A. B.; Schmitz, U.; Marshall, A. D.; Vanichkina, D.; Nagarajah, R.; Vellozzi, M.; Wong, J.; Bailey, C. G.; Rasko, J. E.

10.1101/851923 — molecular biology — Posted on 2019-11-22

901 Maternal exposure to cigarette smoking induces immediate and durable changes in placental DNA methylation affecting enhancer and imprinting control regions

Rousseaux, S.; Seyve, E.; Chuffart, F.; Bourova-Flin, E.; Benmerad, M.; Charles, M.-A.; Forhan, A.; Heude, B.; Siroux, V.; Slama, R.; Tost, J.; Vaiman, D.; Khochbin, S.; Lepeule, J.

10.1101/852186 — genomics — Posted on 2019-11-22

902 Global non-animal peroxidases analysis provides insights into the evolutionary study of this gene family in green lineage

Mbadinga Mbadinga, D. L.; Li, Q.; Ranocha, P.; Martinez, Y.; Cooper, E. D.; Dunand, C.

10.1101/851881 — evolutionary biology — Posted on 2019-11-22

903 Zygotic pioneer factor activity of Odd-paired/Zic is necessary for establishing the Drosophila Segmentation Network

Soluri, I. V.; Zumerling, L. M.; Payan Parra, O. A.; Clark, E. G.; Blythe, S. A.

10.1101/852707 — developmental biology — Posted on 2019-11-22

904 DISTINCT ACTIN-DEPENDENT NANOSCALE ASSEMBLIES UNDERLIE THE DYNAMIC AND HIERARCHICAL ORGANIZATION OF E-CADHERIN.

Chandran, R.; Kale, G.; Philippe, J.-M.; Lecuit, T.; Mayor, S.

10.1101/851899 — cell biology — Posted on 2019-11-22

905 Nonlinear stimulus representations in neural circuits with approximate excitatory-inhibitory balance

Baker, C.; Zhu, V.; Rosenbaum, R.

10.1101/841684 — neuroscience — Posted on 2019-11-22

906 Slicing the genome of star-fruit (Averrhoa carambola L.)

Fan, Y.; Sahu, S. K.; Yang, T.; mu, w.; wei, j.; Cheng, L.; Yang, J.-l.; Xu, X.; Liu, X.; Mu, R.-c.; Liu, J.; Zhao, J.-m.; Zhao, Y.-x.; Liu, H.

10.1101/851790 — genomics — Posted on 2019-11-22

907 Evolutionary history of the porpoises (Phocoenidae) across the speciation continuum: a mitogenome phylogeographic perspective

Ben Chehida, Y.; Thumloup, J.; Schumacher, C.; Harkins, T.; Aguilar, A.; Borrell, A.; Ferreira, M.; Rojas-Bracho, L.; Roberston, K. M.; Taylor, B. L.; Vikingsson, G. A.; Weyna, A.; Romiguier, J.; Morin, P. A.; Fontaine, M. C.

10.1101/851469 — evolutionary biology — Posted on 2019-11-22

908 VADR: validation and annotation of virus sequence submissions to GenBank

Schäffer, A. A.; Hatcher, E.; Yankie, L.; Shonkwiler, L.; Brister, J. R.; Karsch-Mizrachi, I.; Nawrocki, E. P.

10.1101/852657 — bioinformatics — Posted on 2019-11-22

909 Non-invasive neuromodulation using rTMS and the Electromagnetic-Preceptive Gene (EPG) facilitates plasticity after nerve injury

Cywiak, C.; Ashbaugh, R. C.; Metto, A.; Udpa, L.; Qian, C.; Gilad, A. A.; Zhong, M.; Pelled, G.

10.1101/851444 — neuroscience — Posted on 2019-11-22

910 mity: A highly sensitive mitochondrial variant analysis pipeline for whole genome sequencing data

Puttick, C.; Kumar, K. R.; Davis, R. L.; Pinese, M.; Thomas, D. M.; Dinger, M. E.; Sue, C. M.; Cowley, M. J.

10.1101/852210 — bioinformatics — Posted on 2019-11-22

911 A Domain-general Cognitive Core defined in Multimodally Parcellated Human Cortex

Assem, M.; Glasser, M. F.; Van Essen, D. C.; Duncan, J.

10.1101/517599 — neuroscience — Posted on 2019-11-22

912 Alcohol Drinking Alters Stress Coping via Extended Amygdala Kappa Opioid Receptor Signaling

Hwa, L. S.; Neira, S.; Flanigan, M. E.; Stanhope, C. M.; Pina, M. M.; Pati, D. S.; Hon, O. J.; Yu, W.; Kokush, E.; Calloway, R.; Boyt, K.; Kash, T. L.

10.1101/773481 — neuroscience — Posted on 2019-11-22

913 Electrophysiological correlates of the flexible allocation of visual working memory resources

Salahub, C.; Lockhart, H. A.; Dube, B.; Al-Aidroos, N.; Emrich, S. M.

10.1101/746164 — neuroscience — Posted on 2019-11-22

914 Null results from a dimensional study of error-related negativity (ERN) and self-reported psychiatric symptoms

Seow, T. X.; Benoit, E.; Dempsey, C.; Jennings, M.; Maxwell, A.; McDonough, M.; Gillan, C. M.

10.1101/732594 — neuroscience — Posted on 2019-11-22

915 Congruent demographic responses to Pleistocene geological processes in Sumatran parachuting frogs: a comparison of target-capture and ddRADseq for population genomic analyses

O'Connell, K. A.; Oaks, J. R.; Hamidy, A.; Kurniawan, N.; Smith, E. N.; Fujita, M. K.

10.1101/843664 — evolutionary biology — Posted on 2019-11-22

916 Large-scale Analyses of Disease Biomarkers and Apremilast Pharmacodynamic Effects

Medvedeva, I. V.; Stokes, M. E.; Eisinger, D.; LaBrie, S. T.; Ai, J.; Trotter, M. W. B.; Schafer, P.; Yang, R.

10.1101/652875 — bioinformatics — Posted on 2019-11-22

917 Predator complementarity dampens variability of phytoplankton biomass in a diversity-stability trophic cascade

Rakowski, C. J.; Leibold, M. A.

10.1101/851642 — ecology — Posted on 2019-11-22

918 Quantitative Detection of Cell Activity by Measuring the Fluctuation of Intracellular Motility

Sakuma, M.; Kondo, Y.; Higuchi, H.

10.1101/850602 — cell biology — Posted on 2019-11-22

919 Time-of-day dependent responses of cyanobacterial cellular viability against oxidative stress

Tanaka, K.; Nakanishi, S.

10.1101/851774 — plant biology — Posted on 2019-11-22

920 The cell-wall-localised BETA-XYLOSIDASE 4 contributes to immunity of Arabidopsis against Botrytis cinerea

Guzha, A.; McGee, R.; Hartken, D.; Scholz, P.; Luedke, D.; Bauer, K.; Wenig, M.; Zienkiewicz, K.; Feussner, I.; Vlot, A. C.; Wiermer, M.; Haughn, G.; Ischebeck, T.

10.1101/851170 — plant biology — Posted on 2019-11-22

921 Enhancing Gesture Decoding Performance Using Signals from Posterior Parietal Cortex: A Stereo-Electroencephalograhy (SEEG) Study

Wang, M.; Li, G.; Jiang, S.; Wei, Z.; Chen, L.; Zhang, D.

10.1101/849752 — neuroscience — Posted on 2019-11-22

922 Switch from translation initiation to elongation needs Not4 and Not5 collaboration

Allen, G. E.; Panasenko, O. O.; Villanyi, Z.; Zagatti, M.; Weiss, B.; Polte, C.; Ignatova, Z.; Collart, M.

10.1101/850859 — molecular biology — Posted on 2019-11-22

923 Derivatives of the antimalarial drug mefloquine are broad spectrum antifungal molecules with activity against drug-resistant clinical isolates

Montoya, M. C.; Beattie, S. R.; Alden, K. M.; Krysan, D. J.

10.1101/851816 — microbiology — Posted on 2019-11-22

924 Multi-functional antibodies are induced by the RTS,S malaria vaccine and associated with protection in a phase I/IIa trial

Kurtovic, L.; Atre, T.; Feng, G.; Wines, B. D.; Chan, J.-A.; Boyle, M. J.; Drew, D. R.; Hogarth, M.; Fowkes, F. J. I.; Bergmann-Leitner, E. S.; Beeson, J. G.

10.1101/851725 — immunology — Posted on 2019-11-22

925 Dynamic evolution of euchromatic satellites on the X chromosome in Drosophila melanogaster and the simulans clade

Sproul, J. S.; Khost, D. E.; Eickbush, D. G.; Negm, S.; Wei, X.; Wong, I.; Larracuente, A. M.

10.1101/846238 — genomics — Posted on 2019-11-22

926 A resource of targeted mutant mouse lines for 5,061 genes

Birling, M.-C.; Yoshiki, A.; Adams, D. J.; Ayabe, S.; Beaudet, A. L.; Bottomley, J.; Bradley, A.; Brown, S. D. M.; Bürger, A.; Bushell, W.; Chiani, F.; Chin, H.-J. G.; Christou, S.; Codner, G. F.; DeMayo, F. J.; Dickinson, M.; Doe, B.; Donahue, L. R.; Fray, M. D.; Gambadoro, A.; Gao, X.; Gertsenstein, M.; Gomez-Segura, A.; Goodwin, L. O.; Heaney, J. D.; Hérault, Y.; Hrabe de Angelis, M.; Jiang, S.-T.; Justice, M. J.; Kasparek, P.; King, R. E.; Kühn, R.; Lee, H.; Lee, Y. J.; Liu, Z.; Lloyd, K. C. K.; Lorenzo, I.; Mallon, A.-M.; McKerlie, C.; Meehan, T. F.; Newman, S.; Nutter, L. M

10.1101/844092 — genetics — Posted on 2019-11-22

927 Porous upconversion nanostructures as bimodal biomedical imaging contrast agents

Du, Z.; Gupta, A.; Clarke, C.; Cappadona, M.; Clases, D.; Liu, D.; Yang, Z.; Doble, P.; Price, W.; Xu, X.

10.1101/837864 — biophysics — Posted on 2019-11-22

928 In vivo diversification of target genomic sites using processive T7 RNA polymerase-base deaminase fusions blocked by RNA-guided dCas9

Alvarez, B.; Mencia, M.; de Lorenzo, V.; Fernandez, L. A.

10.1101/850974 — bioengineering — Posted on 2019-11-22

929 Evidence for the Involvement of Vernalization-related Genes in the Regulation of Cold-induced Ripening in 'D'Anjou' and 'Bartlett' Pear Fruit

Hewitt, S. L.; Hendrickson, C.; Dhingra, A.

10.1101/851733 — plant biology — Posted on 2019-11-22

930 Novel determination on root-knot nematodes; microspace, mineral profile and transduction of metabolic signals in tomato

GarciaGaytan, V.; SanchezRodriguez, E.; Alonso-Perez, O.; Ordaz-Ortiz, J. J.; Montero-Vargas, J. M.; Rojas-Abarca, L.; Cabrera, E. G.; Negrete-Guerrero, J. L.

10.1101/851832 — physiology — Posted on 2019-11-22

931 Extended access self-administration of methamphetamine is associated with age- and sex-dependent differences in drug taking behavior and recognition memory deficits in rats

Westbrook, S. R.; Dwyer, M. R.; Cortes, L. R.; Gulley, J. M.

10.1101/850396 — neuroscience — Posted on 2019-11-22

932 Cutting in-line with iron: ribosomal function and non-oxidative RNA cleavage

Guth-Metzler, R.; Bray, M. S.; Suttapitugsakul, S.; Montllor-Albalate, C.; Bowman, J. C.; Wu, R.; Reddi, A. R.; Okafor, C. D.; Glass, J. B.; Williams, L. D.

10.1101/851097 — molecular biology — Posted on 2019-11-22

933 In-depth profiling of calcite precipitation by environmental bacteria reveals fundamental mechanistic differences with relevance to application

Reeksting, B. J.; Hoffmann, T. D.; Tan, L.; Paine, K.; Gebhard, S.

10.1101/850883 — microbiology — Posted on 2019-11-22

934 Synergistic cues from diverse bacteria enhance multicellular development in a choanoflagellate

Ireland, E. V.; Woznica, A.; King, N.

10.1101/851824 — microbiology — Posted on 2019-11-22

935 Uncoupling splicing from transcription using antisense oligonucleotides reveals a dual role for I exon donor splice sites in antibody class switching

Marchalot, A.; Ashi, M. O.; Lambert, J.-M.; Srour, N.; Delpy, L.; Le Pennec, S.

10.1101/850867 — immunology — Posted on 2019-11-22

936 Genome-enabled prediction models for black tea (Camellia sisnesnsis) quality and drought tolerance traits

Koech, R.

10.1101/850792 — genomics — Posted on 2019-11-22

937 Balancing Selection at HLA-G Modulates Fetal Survival, Preeclampsia and Human Birth Sex Ratio

Wedenoja, S.; Yoshihara, M.; Teder, H.; Sariola, H.; Gissler, M.; Katayma, S.; Wedenoja, J.; Hakkinen, I. M.; Ezer, S.; Linder, N.; Lundin, J.; Skoog, T.; Sahlin, E.; Iwarsson, E.; Pettersson, K.; Kajantie, E.; Mokkonen, M.; Heinonen, S.; Laivuori, H.; Krjutskov, K.; Kere, J.

10.1101/851089 — evolutionary biology — Posted on 2019-11-22

938 Single-cell immuno-mechanics: rapid viscoelastic changes are a hallmark of early leukocyte activation.

Zak, A.; Merino-Cortes, S. V.; Sadoun, A.; Babataheri, A.; Dogniaux, S.; Dupre-Crochet, S.; Hudik, E.; He, H.-T.; Barakat, A. I.; Carrasco, Y. R.; Hamon, Y.; Puech, P.-H.; Hivroz, C.; Nüsse, O.; Husson, J.

10.1101/851634 — biophysics — Posted on 2019-11-22

939 Benchmark of tools for CNV detection from NGS panel data in a genetic diagnostics context

Moreno-Cabrera, J. M.; del Valle, J.; Castellanos, E.; Feliubadalo, L.; Pineda, M.; Brunet, J.; Serra, E.; Capella, G.; Lazaro, C.; Gel, B.

10.1101/850958 — bioinformatics — Posted on 2019-11-22

940 Simultaneous fluorescence imaging of tilted focal planes at two depths in thick neural tissue: Implementation with remote focus in a widefield electrophysiological microscope.

Lagarde, B.; Russell, N.; Esposito, E.; Desban, L.; Wyart, C.; Ogden, D.

10.1101/839050 — neuroscience — Posted on 2019-11-22

941 Rare Rewards Amplify Dopamine Learning Responses

Rothenhoefer, K. M.; Hong, T.; Alikaya, A.; Stauffer, W. R.

10.1101/851709 — neuroscience — Posted on 2019-11-22

942 A high-quality genome assembly of the North American Song Sparrow, Melospiza melodia.

LOUHA, S.; Ray, D. A.; Winker, K.; Glenn, T. C.

10.1101/850990 — genomics — Posted on 2019-11-22

943 Genetic risk of cholangiocarcinoma is linked to the autophagy gene ATG7

Greer, S. U.; Ogmundsdottir, M. H.; Chen, J.; Lau, B. T.; Delacruz, R. G. C.; Sandoval, I. T.; Kristjansdottir, S.; Jones, D. A.; Haslem, D. S.; Romero, R.; Fulde, G.; Bell, J. M.; Jonasson, J. G.; Steingrimsson, E.; Ji, H. P.; Nadauld, L. D.

10.1101/836767 — genomics — Posted on 2019-11-22

944 A saturating mutagenesis CRISPR-Cas9 mediated functional genomic screen identifies cis- and trans-regulatory elements of Oct4 in embryonic stem cells

Canver, M. C.; Tripathi, P.; Bullen, M. J.; Kumar, Y.; Olshansky, M.; Turner, S. J.; Lessard, S.; Pinello, L.; Orkin, S. H.; Das, P. P.

10.1101/851683 — genomics — Posted on 2019-11-22

945 The network structure and eco-evolutionary dynamics of CRISPR-induced immune diversification

Pilosof, S.; Alcala-Corona, S. A.; Wang, T.; Kim, T.; Maslov, S.; Whitaker, R. J.; Pascual, M.

10.1101/850800 — evolutionary biology — Posted on 2019-11-22

946 Regularities in species niches reveal the World's climatic regions

Calatayud, J.; Neuman, M.; Rojas, A.; Eriksson, A.; Rosvall, M.

10.1101/851030 — ecology — Posted on 2019-11-22

947 A multiscale framework for disentangling the roles of evenness, density and aggregation on diversity gradients

McGlinn, D. J.; Engel, T.; Blowes, S. A.; Gotelli, N. J.; Knight, T. M.; McGill, B. J.; Sanders, N.; Chase, J. M.

10.1101/851717 — ecology — Posted on 2019-11-22

948 Protein products of non-stop mRNA disrupt nucleolar homeostasis

Davis, Z. H.; Mediani, L.; Vinet, J.; Alberti, S.; Holehouse, A. S.; Carra, S.; Brandman, O.

10.1101/851741 — cell biology — Posted on 2019-11-22

949 Daratumumab induces mechanisms of immune activation through CD38+ NK cell targeting

Viola, D.; Dona, A.; Caserta, E.; Troadec, E.; Gunes, E. G.; Besi, F.; McDonald, T.; Ghoda, L.; Sanchez, J. F.; Khalife, J.; Martella, M.; Karanes, C.; Htut, M.; Wang, X.; Rosenzweig, M.; Chowdhury, A.; Sborov, D.; Miles, R. R.; Yazaki, P. J.; Forman, S. J.; Shively, J.; Marcucci, G.; Rosen, S. T.; Keats, J. J.; Krishnan, A.; Pichiorri, F.

10.1101/849265 — cancer biology — Posted on 2019-11-22

950 Welcoming back my arm: Affective touch increases body ownership following right hemisphere stroke

Jenkinson, P. M.; Papadaki, C.; Besharati, S.; Moro, V.; Gobbetto, V.; Crucianelli, L.; Kirsch, L. P.; Avesani, R.; Ward, N. S.; Fotopoulou, A.

10.1101/851055 — neuroscience — Posted on 2019-11-22

951 Increased efficacy of histone methyltransferase G9a inhibitors against MYCN-amplified Neuroblastoma

Bellamy, J.; Malik, K.; Szemes, M.; Melegh, Z.; Dallosso, A.; Kollareddy, M.; Catchpoole, D.

10.1101/851105 — cancer biology — Posted on 2019-11-22

952 Discovery Of The First Human Retro-Giant Virus: Description of its morphology, retroviral kinase and ability to induce tumours in mice

Lusi, E. A.; Caicci, F.

10.1101/851063 — cancer biology — Posted on 2019-11-22

953 Colony volatiles and substrate-borne vibrations entrain circadian rhythms and are potential mediators of social synchronization in honey bee colonies

Siehler, O.; Bloch, G.

10.1101/850891 — animal behavior and cognition — Posted on 2019-11-22

954 Using a Systems Change Framework to Evaluate Academic Equity & Climate Efforts in a Graduate Program

Wallace, K. J.; York, J. M.

10.1101/848101 — scientific communication and education — Posted on 2019-11-22

955 The TARANI/ UBIQUITIN SPECIFIC PROTEASE 14 destabilizes the AUX/IAA transcriptional repressors and regulates auxin response in Arabidopsis thaliana

Majumdar, P.; Karidas, P.; Siddiqi, I.; Nath, U.

10.1101/850826 — plant biology — Posted on 2019-11-22

956 Differential activation of G protein-mediated signalling by synthetic cannabinoid receptor agonists

Sachdev, S.; Banister, S.; Santiago, M.; Bladen, C.; Kassiou, M. `; Connor, M.

10.1101/850651 — pharmacology and toxicology — Posted on 2019-11-22

957 ETV7 represses a subset of interferon-stimulated genes that restrict influenza viruses

Froggatt, H. M.; Harding, A. T.; Heaton, N. S.

10.1101/851543 — microbiology — Posted on 2019-11-22

958 Cancer Predisposition Sequencing Reporter (CPSR): a flexible variant report engine for germline screening in cancer

Nakken, S.; Saveliev, V.; Hofmann, O.; Moller, P.; Myklebost, O.; Hovig, E.

10.1101/846089 — bioinformatics — Posted on 2019-11-22

959 Deep-Channel uses deep neural networks to detect single-molecule events from patch-clamp data

Celik, N.; O'Brien, F.; Brennan, S.; Rainbow, R. D.; Dart, C.; Zheng, Y.; Coenen, F.; Barrett-Jolley, R.

10.1101/767418 — physiology — Posted on 2019-11-22

960 Congruent demographic responses to Pleistocene geological processes in Sumatran parachuting frogs: a comparison of target-capture and ddRADseq for population genomic analyses

O'Connell, K. A.; Oaks, J. R.; Hamidy, A.; Kurniawan, N.; Smith, E. N.; Fujita, M. K.

10.1101/843664 — evolutionary biology — Posted on 2019-11-22

961 DeepDBP: Deep Neural Networks for Identification of DNA-binding Proteins

Shadab, S.; Khan, M. T. A.; Neezi, N. A.; Adilina, S.; Shatabda, S.

10.1101/829432 — bioinformatics — Posted on 2019-11-22

962 Effects of pathogenic CNVs on biochemical markers: a study on the UK Biobank

Bracher-Smith, M.; Kendall, K. M.; Rees, E.; Einon, M.; O'Donovan, M.; Owen, M. J.; Kirov, G.

10.1101/723270 — genomics — Posted on 2019-11-22

963 Removing the hidden data dependency of DIA with predicted spectral libraries

Van Puyvelde, B.; Willems, S.; Gabriels, R.; Daled, S.; De Clerck, L.; Staes, A.; Vande Casteele, S.; Impens, F.; Deforce, D.; Martens, L.; Degroeve, S.; Dhaenens, M.

10.1101/681429 — bioinformatics — Posted on 2019-11-22

964 The representation of two-body shapes in the human visual cortex

Abassi, E.; Papeo, L.

10.1101/637082 — neuroscience — Posted on 2019-11-22

965 Molecular determinants of Arc oligomerization and formation of virus-like capsids

Eriksen, M. S.; Nikolaienko, O.; Hallin, E. I.; Grodem, S.; Bustad, H. J.; Flydal, M. I.; O'Connell, R.; Hosokawa, T.; Lascu, D.; Akerkar, S.; Cuellar, J.; Chambers, J. J.; Merski, I.; Muruganandam, G.; Loris, R.; Kanhema, T.; Hayashi, Y.; Stratton, M. M.; Valpuesta, J. M.; Kursula, P.; Martinez, A.; Bramham, C. R.

10.1101/667956 — biochemistry — Posted on 2019-11-22

966 Continental-scale microbiome study reveals different environmental characteristics determining microbial richness and composition/quantity in hotel rooms

Fu, X.; Li, Y.; Yuan, Q.; Cai, G.; Deng, Y.; Zhang, X.; Norbäck, D.; Sun, Y.

10.1101/849430 — microbiology — Posted on 2019-11-22

967 Stoichiometric constraints modulate the effects of temperature and nutrients on biomass distribution and community stability

Sentis, A.; Haegeman, B.; Montoya, J. M.

10.1101/589895 — ecology — Posted on 2019-11-22

968 Automated reconstruction of all gene histories in large bacterial pangenome datasets and search for co-evolved gene modules with Pantagruel

Lassalle, F.; Veber, P.; Jauneikaite, E.; Didelot, X.

10.1101/586495 — bioinformatics — Posted on 2019-11-22

969 The genome sequence of the octocoral Paramuricea clavata - a key resource to study the impact of climate change in the Mediterranean

Ledoux, J.-B.; Cruz, F.; Gomez-Garrido, J.; Antoni, R.; Blanc, J.; Gomez-Gras, D.; Lopez-Sendino, P.; Antunes, A.; Linares, C.; Gut, M.; Alioto, T. S.; Garrabou, J.

10.1101/849158 — genomics — Posted on 2019-11-22

970 "mir152 hypomethylation, potentially triggered by embryonic hypoxia, as a mechanism for non-syndromic cleft lip/palate"

Alvizi, L.; Brito, L. A.; Bischain, B.; da Silva, C. B. F.; Ramos, S. L. G.; Kobayashi, G. S.; Passos-Bueno, M. R.

10.1101/850016 — developmental biology — Posted on 2019-11-22

971 Visualization of viral infection dynamics in a unicellular eukaryote and quantification of viral production using VirusFISH

Castillo, Y. M.; Sebastian, M.; Forn, I.; Grimsley, N.; Yau, S.; Moraru, C.; Vaque, D.

10.1101/849455 — microbiology — Posted on 2019-11-22

972 Ecological divergence and hybridization of Neotropical Leishmania parasites

Van den Broeck, F.; Savill, N. J.; Imamura, H.; Sanders, M.; Maes, I.; Cooper, S.; Mateus, D.; Jara, M.; Adaui, V.; Arevalo, J.; Llanos-Cuentas, A.; Garcia, L.; Cupolillo, E.; Miles, M.; Berriman, M.; Schnaufer, A.; Cotton, J.; Dujardin, J.-C.

10.1101/824912 — genomics — Posted on 2019-11-22

973 Quantitative analysis of the ubiquitin-proteasome system under proteolytic and folding stressors

Work, J. J.; Brandman, O.

10.1101/780676 — cell biology — Posted on 2019-11-22

974 Ovarian hormone status dictates the neuroinflammatory and behavioural consequences of sub-chronic stress exposure in middle-aged female mice

Eid, R. S.; Lieblich, S. E.; Wong, S. J.; Galea, L.

10.1101/706887 — neuroscience — Posted on 2019-11-22

975 A widespread family of heat-resistant obscure (Hero) proteins protect against protein instability and aggregation

Tsuboyama, K.; Osaki, T.; Matsuura-Suzuki, E.; Kozuka-Hata, H.; Okada, Y.; Oyama, M.; Ikeuchi, Y.; Iwasaki, S.; Tomari, Y.

10.1101/816124 — molecular biology — Posted on 2019-11-22

976 Assembly of the Drosophila mushroom body circuit and its regulation by Semaphorin 1a

Lin, C.-H.; Lin, S.

10.1101/835595 — developmental biology — Posted on 2019-11-22

977 Selective activation of estrogen receptors α and β: Implications for depressive-like phenotypes in female mice exposed to chronic unpredictable stress

Eid, R. S.; Lieblich, S. E.; Mah, A. G.; Chaiton, J.; Wen, Y.; Wong, S.; Galea, L. A.

10.1101/758862 — neuroscience — Posted on 2019-11-22

978 Motor imagery practice during arm-immobilization benefits sensorimotor cortical functions and plasticity-related sleep features

Debarnot, U.; Perrault, A. A.; Sterpenich, V. A.; Legendre, G.; Huber, C.; Guillot, A.; Schwartz, S.

10.1101/828889 — neuroscience — Posted on 2019-11-22

979 Coessential Genetic Networks Reveal the Organization and Constituents of a Dynamic Cellular Stress Response

Amici, D. R.; Jackson, J. M.; Metz, K. A.; Ansel, D. J.; Smith, R. S.; Brockway, S.; Takagishi, S. R.; Srivastava, S.; O'Hara, B. P.; Cho, B.; Goo, Y. A.; Kelleher, N. L.; Ben-Sahra, I.; Foltz, D. R.; Mendillo, M. L.

10.1101/847996 — genetics — Posted on 2019-11-22

980 Cellular Fitness Phenotypes of Cancer Target Genes in Cancer Therapeutics

George, B.; Mukundan, P. P.; Paul, A. M.; Leitzel, K.; Ali, S. M.; Sandiford, O.; Lipton, A.; Rameshwar, P.; Hortobagyi, G. N.; Pillai, R. M.; Kumar, R.

10.1101/840975 — cancer biology — Posted on 2019-11-22

981 DeepDBP: Deep Neural Networks for Identification of DNA-binding Proteins

Shadab, S.; Khan, M. T. A.; Neezi, N. A.; Adilina, S.; Shatabda, S.

10.1101/829432 — bioinformatics — Posted on 2019-11-22

982 Testosterone secretion varies in a sex- and stage-specific manner: insights on the regulation of competitive traits from a sex-role reversed species

Lipshutz, S. E.; Rosvall, K. A.

10.1101/775262 — physiology — Posted on 2019-11-22

983 Functional Parcellation of the Default Mode Network: A Large-Scale Meta-Analysis

Wang, S.; Taren, A. A.; Tepfer, L. J.; Smith, D. V.

10.1101/225375 — neuroscience — Posted on 2019-11-22

984 Modeling motor-evoked potentials from neural field simulations of transcranial magnetic stimulation

Wilson, M. T.; Moezzi, B.; Rogasch, N. C.

10.1101/847830 — biophysics — Posted on 2019-11-22

985 Chloroplast nucleoids are highly dynamic in ploidy, number, and structure during leaf development

Greiner, S.; Golczyk, H.; Malinova, I.; Pellizzer, T.; Bock, R.; Boerner, T.; Herrmann, R. G.

10.1101/632240 — plant biology — Posted on 2019-11-22

986 The choreography of human attraction: physiological synchrony in a blind date setting

Prochazkova, E.; Sjak-Shie, E. E.; Behrens, F.; Lindh, D.; Kret, M. E.

10.1101/748707 — physiology — Posted on 2019-11-22

987 In vivo interictal signatures of human periventricular heterotopia

Frazzini, V.; Whitmarsh, S.; Lambrecq, V.; Lehongre, K.; Yger, P.; Mathon, B.; Adam, C.; Hasboun, D.; Navarro, V.

10.1101/816173 — pathology — Posted on 2019-11-22

988 Transdiagnostic phenotyping reveals a range of metacognitive deficits associated with compulsivity

Seow, T. X.; Gillan, C.

10.1101/664003 — neuroscience — Posted on 2019-11-22

989 Activation of GPR56, a novel adhesion GPCR, is necessary for nuclear androgen receptor signaling in prostate cells

Bagchi, G.; Singh, J. P.; Dagar, M.; Dagar, G.; Rawal, S.; Sharma, R. D.; Tyagi, R. K.

10.1101/851667 — cancer biology — Posted on 2019-11-21

990 Affinity of rhodopsin to raft enables the aligned oligomer formation from dimers: Coarse-grained molecular dynamics simulation of disk membranes

Kaneshige, Y.; Hayashi, F.; Morigaki, K.; Yamashita, H.; Fujii, M.; Awazu, A.

10.1101/850966 — biophysics — Posted on 2019-11-21

991 Object Recognition in P14 mice

Chandrakantan, A.; Adler, A.; Pereira, F.

10.1101/850933 — animal behavior and cognition — Posted on 2019-11-21

992 Targeted Memory Reactivation Increases Memory Recall: A Meta-analysis

Lieber, T.

10.1101/796458 — neuroscience — Posted on 2019-11-21

993 The structure and function of the sucker systems of hill stream loaches

Willis, J.; Burt de Perera, T.; Newport, C.; Poncelet, G.; Sturrock, C.; Thomas, A. L. R.

10.1101/851592 — zoology — Posted on 2019-11-21

994 Balancing cell populations endowed with a synthetic toggle switch via adaptive pulsatile feedback control

Guarino, A.; Fiore, D.; Salzano, D.; di Bernardo, M.

10.1101/851212 — synthetic biology — Posted on 2019-11-21

995 Learning not to remember: How predicting the future impairs encoding of the present

Sherman, B. E.; Turk-Browne, N. B.

10.1101/851147 — neuroscience — Posted on 2019-11-21

996 Into the deep (sequence) of the foot-and-mouth disease virus gene pool: bottlenecks and adaptation during infection in naïve and vaccinated cattle

Fish, I.; Stenfeldt, C.; Palinski, R.; Pauszek, S. J.; Arzt, J.

10.1101/850743 — microbiology — Posted on 2019-11-21

997 ETV7 represses a subset of interferon-stimulated genes that restrict influenza viruses

Froggatt, H. M.; Harding, A. T.; Heaton, N. S.

10.1101/851543 — microbiology — Posted on 2019-11-21

998 Chronic viral infection promotes early germinal center exit of B cells and impaired antibody development.

Staupe, R. P.; Vella, L. A.; Manne, S.; Giles, J. R.; Meng, W.; Herati, R. S.; Khan, O.; Wu, J. E.; Baxter, A. E.; Luning Prak, E. T.; Wherry, E. J.

10.1101/849844 — immunology — Posted on 2019-11-21

999 Cord blood DNA methylome in newborns later diagnosed with autism spectrum disorder reflects early dysregulation of neurodevelopmental and X-linked genes

Mordaunt, C. E.; Jianu, J. M.; Laufer, B.; Zhu, Y.; Dunaway, K. W.; Bakulski, K. M.; Feinberg, J. I.; Volk, H. E.; Lyall, K.; Croen, L. A.; Newschaffer, C. J.; Ozonoff, S.; Hertz-Picciotto, I.; Fallin, M. D.; Schmidt, R. J.; LaSalle, J. M.

10.1101/850529 — genomics — Posted on 2019-11-21

1000 Type II Alexander disease caused by splicing errors and aberrant overexpression of an uncharacterized GFAP isoform.

Helman, G.; Takanohashi, A.; Hagemann, T. L.; Perng, M. D.; Walkiewicz, M.; Woidill, S.; Sase, S.; Cross, Z.; Du, Y.; Zhao, L.; Waldman, A.; Haake, B. C.; Fatemi, A.; Brenner, M.; Sherbini, O.; Messing, A.; Vanderver, A.; Simons, C.

10.1101/842229 — genetics — Posted on 2019-11-21

1001 Neighbor GWAS: incorporating neighbor genotypic identity into genome-wide association studies of field herbivory on Arabidopsis thaliana

Sato, Y.; Yamamoto, E.; Shimizu, K. K.; Nagano, A. J.

10.1101/845735 — genetics — Posted on 2019-11-21

1002 Identification of a novel missense variant in SLC45A2 associated with dilute snowdrop phenotype in Gypsy horses

Bisbee, D.; Carpenter, M.; Hoefs-Martin, K.; Brooks, S.; Lafayette, C.

10.1101/851246 — genetics — Posted on 2019-11-21

1003 Neolithic genomes reveal a distinct ancient HLA allele pool and population transformation in Europe

Immel, A.; Rinne, C.; Meadows, J.; Barquera, R.; Szolek, A.; Pierini, F.; Susat, J.; Boehme, L.; Dose, J.; Bonczarowska, J.; Drummer, C.; Fuchs, K.; Ellinghaus, D.; Kaessens, J. C.; Furholt, M.; Kohlbacher, O.; Schade-Lindig, S.; Mathieson, I.; Franke, A.; Krause, J.; Mueller, J.; Lenz, T. L.; Nebel, A.; Krause-Kyora, B.

10.1101/851188 — evolutionary biology — Posted on 2019-11-21

1004 Semaphorin 3A binding to chondroitin sulfate E enhances the biological activity of the protein, and cross-links and rigidifies glycosaminoglycan matrices

Djerbal, L.; Vives, R. R.; Lopin-Bon, C.; Richter, R. P.; Kwok, J. C. F.; Lortat-Jacob, H.

10.1101/851121 — biochemistry — Posted on 2019-11-21

1005 Single-cell molecular profiling provides a high-resolution map of basophil and mast cell differentiation

Hamey, F. K.; Lau, W. W. Y.; Kucinski, I.; Wang, X.; Diamanti, E.; Wilson, N. K.; Gottgens, B.; Dahlin, J. S.

10.1101/848358 — immunology — Posted on 2019-11-21

1006 Genome-wide association and functional analyses identify CASC20 and KIF26B as target loci in heterotopic ossification

Hatzikotoulas, K.; Pickering, G. A.; Clark, M. J.; Felix-Ilemhenbhio, F.; Kocsy, K.; Simpson, J.; MacInnes, S. J.; Koprulu, M.; Southam, L.; Bellantuono, I.; Baidzajevas, K.; Young, D. A.; Gartland, A.; Zeggini, E.; Kiss-Toth, E.; Wilkinson, J. M.

10.1101/845958 — genetics — Posted on 2019-11-21

1007 On the inference of a southern origin of the North American firefly Photinus pyralis

Catalan, A.; Hoehna, S.; Lower, S. E.; Duchen, P.

10.1101/851139 — evolutionary biology — Posted on 2019-11-21

1008 Learning mutational signatures and their multidimensional genomic properties with TensorSignatures

Vohringer, H.; Gerstung, M.

10.1101/850453 — cancer biology — Posted on 2019-11-21

1009 Convergence and divergence in anti-predator displays: A novel approach to quantitative behavioural comparison in Neotropical snakes

Davis Rabosky, A. R.; Moore, T. Y.; Sanchez-Paredes, C. M.; Westeen, E. P.; Larson, J. G.; Sealey, B. A.; Balinski, B. A.

10.1101/849703 — animal behavior and cognition — Posted on 2019-11-21

1010 Family History of Depression is Associated with Alterations in Task-Dependent Connectivity between the Cerebellum and Ventromedial Prefrontal Cortex

Tepfer, L. J.; Alloy, L. B.; Smith, D. V.

10.1101/851477 — neuroscience — Posted on 2019-11-21

1011 Axon-dependent expression of YAP/TAZ mediates Schwann cell remyelination but not proliferation after nerve injury

Grove, M.; Lee, H.; Son, Y.-J.

10.1101/851618 — neuroscience — Posted on 2019-11-21

1012 Competitive Inhibition of Cortisol by Prostaglandins at the Ligand Binding Domain of Glucocorticoid Receptors

Schaper, C.

10.1101/851501 — molecular biology — Posted on 2019-11-21

1013 Splicing-sensitive fusion transcripts associated with key tumor characteristics occur at high frequency in neuroblastoma

Shi, Y.; Rraklli, V.; Maxymovitz, E.; Li, S.; Westerlund, I.; Reina, O. B.; Yuan, J.; Bullova, P.; Juhlin, C. C.; Stenman, A.; Larsson, C.; Kogner, P.; O'Sullivan, M. J.; Schlisio, S.; Holmberg, J.

10.1101/851238 — cancer biology — Posted on 2019-11-21

1014 An electrostatic-interaction-based mechanism triggering misfolding of prion proteins from cellular isoform to scrapie isoform

Yang, L.; Li, J.; Ma, X.; Guo, S.; Hou, C.; Shi, L.; Ye, L.; Zheng, B.; He, X.

10.1101/851493 — biophysics — Posted on 2019-11-21

1015 Neurocognitive mechanisms of social inferences in typical and autistic adolescents

Rosenblau, G.; Korn, C. W.; Dutton, A.; Lee, D.; Pelphrey, K.

10.1101/850552 — neuroscience — Posted on 2019-11-21

1016 Image memorability is predicted by activity across different stages of convolutional neural networks and the human ventral stream

Koch, G. E.; Akpan, E.; Coutanche, M. N.

10.1101/834796 — neuroscience — Posted on 2019-11-21

1017 Selective facilitation of egocentric mental transformations under short-term microgravity

Meirhaeghe, N.; Bayet, V.; Paubel, P.-V.; Melan, C.

10.1101/851162 — neuroscience — Posted on 2019-11-21

1018 Exploring groundwater microbial communities for natural attenuation potential of micropollutants

Aldas-Vargas, A.; Hauptfeld, E.; Hermes, G.; Atashgahi, S.; Smidt, H.; Rijnaarts, H. H. M.; Sutton, N. B.

10.1101/850750 — microbiology — Posted on 2019-11-21

1019 Low iron-induced small RNA BrrF regulates central metabolism and oxidative stress responses in Burkholderia cenocepacia

Sass, A.; Coenye, T.

10.1101/850735 — microbiology — Posted on 2019-11-21

1020 Transcription factors protect from DNA re-methylation during reprograming of primordial germ cells and pre-implantation embryos

Kremsky, I.; Corces, V.

10.1101/850362 — genomics — Posted on 2019-11-21

1021 Existence and functions of hypothalamic kisspeptin neuropeptide signaling system in a non-chordate deuterostome species

Wang, T.; Cao, Z.; Shen, Z.; Yang, J.; Chen, X.; Yang, Z.; Xu, K.; Xiang, X.; Yu, Q.; Song, Y.; Wang, W.; Tian, Y.; Sun, L.; Zhang, L.; Guo, S.; Zhou, N.

10.1101/851261 — evolutionary biology — Posted on 2019-11-21

1022 Naturally occurring fluorescence protects the eutardigrade Paramacrobiotus sp. from ultraviolet radiation

Suma, H. R.; Prakash, S.; Giri, D.; Mugesh, G.; Eswarappa, S.

10.1101/851535 — ecology — Posted on 2019-11-21

1023 Restriction of S-adenosylmethionine conformational freedom by knotted protein binding sites

Perlinska, A. P.; Stasiulewicz, A.; Nawrocka, E. K.; Kazimierczuk, K.; Setny, P.; Sulkowska, J. I.

10.1101/826248 — biophysics — Posted on 2019-11-21

1024 Facile Accelerated Specific Therapeutic (FAST) Platform to Counter Multidrug-Resistance Bacteria

Eller, K. A.; Aunins, T. R.; Courtney, C. M.; Campos, J. K.; Otoupal, P. B.; Erickson, K. E.; Madinger, N. E.; Chatterjee, A.

10.1101/850313 — bioengineering — Posted on 2019-11-21

1025 G-Quadruplexes Act as Sequence Dependent Chaperones via Protein Oligomerization

Begeman, A.; Litberg, T. J.; Bourne, J.; Xuan, Z.; Horowitz, S.

10.1101/850263 — biochemistry — Posted on 2019-11-21

1026 Designing combination therapies using multiple optimal controls

Sharp, J. A.; Browning, A. P.; Mapder, T.; Baker, C. M.; Burrage, K.; Simpson, M. J.

10.1101/850693 — systems biology — Posted on 2019-11-21

1027 Multiplexed biosensors for precision bacteria tropism in vivo

Chien, T.; Harimoto, T.; Kepecs, B.; Gray, K.; Coker, C.; Pu, K.; Azad, T.; Danino, T.

10.1101/851311 — synthetic biology — Posted on 2019-11-21

1028 Quantitative Phenotyping of Vascular Damage Caused by Fusarium Wilt Disease in Cowpea

Ndeve, A. D.; Roberts, P. A.

10.1101/850701 — pathology — Posted on 2019-11-21

1029 Testosterone improves muscle function of the extensor digitorum longus in rats with sepsis

Jinlong, W.; wu, t.

10.1101/850636 — pathology — Posted on 2019-11-21

1030 Brain coding of social network structure

Peer, M.; Hayman, M.; Tamir, B.; Arzy, S.

10.1101/850065 — neuroscience — Posted on 2019-11-21

1031 Taking the sub-lexical route: brain dynamics of reading in the semantic variant of Primary Progressive Aphasia.

Borghesani, V.; Hinkley, L. B.; Ranasinghe, K. G.; Thompson, M.; Shwe, W.; Mizuiri, D.; Lauricella, M.; Europa, E.; Honma, S.; Miller, Z.; Miller, B. L.; Vossel, K.; Houde, J. F.; Gorno-Tempini, M. L.; Nagarajan, S.

10.1101/847798 — neuroscience — Posted on 2019-11-21

1032 BRAIN-DERIVED EXTRACELLULAR VESICLES ARE HIGHLY ENRICHED IN THE PRION PROTEIN AND ITS C1 FRAGMENT: RELEVANCE FOR CELLULAR UPTAKE AND IMPLICATIONS IN STROKE

Brenna, S.; Altmeppen, H. C.; Mohammadi, B.; Rissiek, B.; Schlink, F.; Ludewig, P.; Failla, A. V.; Schneider, C.; Glatzel, M.; Puig, B.; Magnus, T.

10.1101/850099 — neuroscience — Posted on 2019-11-21

1033 Axonal mitochondria across species adjust in diameter depending on thickness of surrounding myelin

Ineichen, B.; Zhu, K.; Carlstrom, K.

10.1101/850370 — neuroscience — Posted on 2019-11-21

1034 Proprioception is subject-specific and improved without performance feedback

Wang, T.; Zhu, Z.; Inoue, K.; Yu, Y.; He, H.; Wei, K.

10.1101/850727 — neuroscience — Posted on 2019-11-21

1035 A user guide to environmental protistology: primers, metabarcoding, sequencing, and analyses

Geisen, S.; Vaulot, D.; Mahe, F.; Lara, E.; de Vargas, C.; Bass, D.

10.1101/850610 — microbiology — Posted on 2019-11-21

1036 Extracellular DNA controls expression of Pseudomonas aeruginosa genes involved in nutrient utilization, metal homeostasis, acid pH tolerance, and virulence.

Lewenza, S.; Johnson, L.; Charron-Mazenod, L.; Hong, M.; Mulcahy-O'Grady, H.

10.1101/850446 — microbiology — Posted on 2019-11-21

1037 Bacterial quorum sensing allows graded responses to variations in density, on both individual and population scales

Rattray, J. B.; Thomas, S. A.; Wang, Y.; Brown, S. P.

10.1101/850297 — microbiology — Posted on 2019-11-21

1038 How do invasion syndromes evolve? An experimental evolution approach using the ladybug Harmonia axyridis

Foucaud, J.; Hufbauer, R. A.; Ravigne, V.; Olazcuaga, L.; Loiseau, A.; Ausset, A.; Wang, S.; Zang, L.-S.; Lemenager, N.; Tayeh, A.; Weyna, A.; Gneux, P.; Bonnet, E.; Dreuilhe, V.; Poutout, B.; Estoup, A.; Facon, B.

10.1101/849968 — evolutionary biology — Posted on 2019-11-21

1039 A whole-genome scan for association with invasion success in the fruit fly Drosophila suzukii using contrasts of allele frequencies corrected for population structure

Olazcuaga, L.; Loiseau, A.; Parinello, H.; Paris, M.; Fraimout, A.; Guedot, C.; Diepenbrock, L. M.; Kenis, M.; Zhang, J.; Chen, X.; Borowieck, N.; Facon, B.; Vogt, H.; Price, D.; Vogel, H.; Prud'homme, B.; Estoup, A.; Gautier, M.

10.1101/851303 — evolutionary biology — Posted on 2019-11-21

1040 Reconciling global priorities for conserving biodiversity habitat

Mokany, K.; Ferrier, S.; Harwood, T. D.; Ware, C.; Di Marco, M.; Grantham, H.; Venter, O.; Hoskins, A. J.; Watson, J.

10.1101/850537 — ecology — Posted on 2019-11-21

1041 Transcriptional activation of cyclin D1 via HER2/HER3 contributes to cell survival and EGFR tyrosine kinase inhibitor resistance in non-small cell lung carcinoma

Liu, B.; Chen, D.; Chen, S.; Saber, A.; Haisma, H. J.

10.1101/851279 — cancer biology — Posted on 2019-11-21

1042 High-efficiency multi-site genomic editing (HEMSE) of Pseudomonas putida through thermoinducible ssDNA recombineering

Aparicio, T.; Nyerges, A.; Martinez-Garcia, E.; de Lorenzo, V.

10.1101/851576 — microbiology — Posted on 2019-11-21

1043 Dorsal raphe oxytocin receptors regulate the neurobehavioral consequences of social touch

Grieb, Z.; Ford, E.; Manfredsson, F.; Lonstein, J.

10.1101/850271 — neuroscience — Posted on 2019-11-21

1044 Environmentally triggered evolutionary cascade across trophic levels in an experimental phage-bacteria-insect system

Bruneaux, M.; Ashrafi, R.; Kronholm, I.; Örmälä-Odegrip, A.-M.; Galarza, J. A.; Zihan, C.; Mruthyunjay, K. S.; Ketola, T.

10.1101/850248 — evolutionary biology — Posted on 2019-11-21

1045 FtsW exhibits distinct processive movements driven by either septal cell wall synthesis or FtsZ treadmilling in E. coli

Yang, X.; McQuillen, R.; Lyv, Z.; Phillips-Mason, P.; De La Cruz, A.; McCausland, J. W.; Liang, H.; DeMeester, K. E.; Grimes, C. L.; de Boer, P.; Xiao, J.

10.1101/850073 — biophysics — Posted on 2019-11-21

1046 Neural responses and perceptual sensitivity to sound depend on sound-level statistics

Herrmann, B.; Augereau, T.; Johnsrude, I. S.

10.1101/850339 — neuroscience — Posted on 2019-11-21

1047 Mental travel in the social domain

Hayman, M.; Arzy, S.

10.1101/849497 — neuroscience — Posted on 2019-11-21

1048 To dereplicate or not to dereplicate?

Evans, J. T.; Denef, V. J.

10.1101/848176 — microbiology — Posted on 2019-11-21

1049 Amplitude and timescale of metacommunity trait-lag response to climate change

Norberg, J.; Moor, H.

10.1101/850289 — ecology — Posted on 2019-11-21

1050 Cyclic peptides can engage a single binding pocket through multiple, entirely divergent modes

Patel, K.; Walport, L. J.; Walshe, J. L.; Solomon, P.; Low, J. K. K.; Tran, D. H.; Mouradian, K. S.; Silva, A. P. G.; Wilkinson-White, L.; Matthews, J. M.; Guss, J. M.; Payne, R. J.; Passioura, T.; Suga, H.; Mackay, J. P.

10.1101/850321 — biochemistry — Posted on 2019-11-21

1051 CytoMAP: a spatial analysis toolbox reveals features of myeloid cell organization in lymphoid tissues

Stoltzfus, C. R.; Filipek, J.; Gern, B. H.; Olin, B. E.; Leal, J. M.; Lyons-Cohen, M. R.; Huang, J.; Paz-Stoltzfus, C. L.; Plumlee, C. R.; Pöschinger, T.; Urdahl, K. B.; Perro, M.; Gerner, M. Y.

10.1101/769877 — immunology — Posted on 2019-11-21

1052 Controlling spatiotemporal pattern formation in a concentration gradient with a synthetic toggle switch

Barbier, I.; Perez-Carrasco, R.; Schaerli, Y.

10.1101/849711 — synthetic biology — Posted on 2019-11-21

1053 Dynamic expression of MMP28 during cranial morphogenesis

Gouignard, N.; THEVENEAU, E.; Saint-Jeannet, J.-P.

10.1101/850834 — developmental biology — Posted on 2019-11-21

1054 Ferroptosis contributes to developmental cell death in rice blast

Shen, Q.; Liang, M.; Yang, F.; Deng, Y. Z.; Naqvi, N. I.

10.1101/850560 — cell biology — Posted on 2019-11-21

1055 Bulk and single-molecule analysis of a novel DNA2-like helicase-nuclease reveals a single-stranded DNA looping motor

Wilkinson, O.; Carrasco, C.; Aicart-Ramos, C.; Moreno-Herrero, F.; Dillingham, M. S.

10.1101/851329 — biochemistry — Posted on 2019-11-21

1056 Construction of light-activated neurotrophin receptors using the improved Light-Induced Dimerizer (iLID)

Hope, J. M.; Liu, A.; Calvin, G. J.; Cui, B.

10.1101/850412 — synthetic biology — Posted on 2019-11-21

1057 Changes in ambient temperature are the prevailing cue in determining Brachypodium distachyon diurnal gene regulation

MacKinnon, K. J.-M.; Cole, B. J.; Yu, C.; Coomey, J. H.; Hartwick, N. T.; Remigereau, M.-S.; Duffy, T.; Michael, T. P.; Kay, S. A.; Hazen, S. P.

10.1101/762021 — plant biology — Posted on 2019-11-21

1058 Lgr5+ telocytes are a signaling hub at the intestinal villus tip

Bahar Halpern, K.; Massalha, H.; Zwick, R. K.; Moor, A. E.; Castillo-Azofeifa, D.; Rozenberg, M.; Farack, L.; Egozi, A.; Miller, D. R.; Averbukh, I.; Harnik, Y.; Weinberg-Corem, N.; de Sauvage, F. J.; Amit, I.; Klein, O. D.; Shoshkes-Carmel, M.; Itzkovitz, S.

10.1101/850909 — cell biology — Posted on 2019-11-21

1059 Intramembrane protease RHBDL4 induces ER-associated degradation of the oligosaccharyltransferase complex

Knopf, J. D.; Landscheidt, N.; Pegg, C. L.; Schulz, B. L.; Kuehnle, N.; Chao, C.-W.; Huck, S.; Lemberg, M. K.

10.1101/850776 — cell biology — Posted on 2019-11-21

1060 AURKA destruction is decoupled from its activity at mitotic exit but suppresses interphase activity

Abdelbaki, A.; Akman, H. B.; Poteau, M.; Grant, R.; Guarguaglini, G.; Gavet, o. C. G.; Lindon, C.

10.1101/850917 — cell biology — Posted on 2019-11-21

1061 A thermophilic phage uses a small terminase protein with a fixed helix-turn-helix geometry

Hayes, J. A.; Hilbert, B. J.; Gaubitz, C.; Stone, N. P.; Kelch, B. A.

10.1101/851345 — biochemistry — Posted on 2019-11-21

1062 An asymmetric sheath controls flagellar supercoiling and motility in the Leptospira spirochete

Gibson, K. H.; Trajtenberg, F.; Wunder, E. A.; Brady, M. R.; San Martin, F.; Mechaly, A. E.; Shang, Z.; Liu, J.; Picardeau, M.; Ko, A. I.; Buschiazzo, A.; Sindelar, C. V.

10.1101/847533 — biophysics — Posted on 2019-11-21

1063 Head Stabilization During Standing in People with Persisting Symptoms after Mild Traumatic Brain Injury

Fino, P. C.; Raffegeau, T. E.; Parrington, L.; Peterka, R. J.; King, L. A.

10.1101/850081 — neuroscience — Posted on 2019-11-21

1064 Complexin suppresses spontaneous exocytosis by capturing the membrane-proximal regions of VAMP2 and SNAP25

Malsam, J.; Baerfuss, S.; Trimbuch, T.; Zarebidaki, F.; Sonnen, A. F. P.; Wild, K.; Scheutzow, A.; Sinning, I.; Briggs, J. A. G.; Rosenmund, C.; Soellner, T. H.

10.1101/849885 — neuroscience — Posted on 2019-11-21

1065 Absence of subcerebral projection neurons delays disease onset and extends survival in a mouse model of ALS

Burg, T.; Bichara, C.; Scekic-Zahirovic, J.; Fischer, M.; Stuart-Lopez, G.; Lefebvre, F.; Cordero-Erausquin, M.; Rouaux, C.

10.1101/849935 — neuroscience — Posted on 2019-11-21

1066 Generalized Rayleigh-Plesset Theory for Cell Size Maintenance in Viruses and Bacteria

Malmi-Kakkada, A.; Thirumalai, D.

10.1101/552778 — cell biology — Posted on 2019-11-21

1067 Magnetic Resonance measurements of cellular and sub-cellular membrane structures in live and fixed neural tissue

Williamson, N. H.; Ravin, R.; Benjamini, D.; Merkle, H.; Falgairolle, M.; O'Donovan, M. J.; Blivis, D.; Ide, D.; Cai, T. X.; Gorash, N. S.; Bai, R.; Basser, P.

10.1101/694661 — biophysics — Posted on 2019-11-21

1068 Differential transcription of expanded gene families in central carbon metabolism of Streptomyces coelicolor A3(2)

Schniete, J. K.; Reumerman, R.; Kerr, L.; Tucker, N. P.; Hunter, I. S.; Herron, P. R.; Hoskisson, P. A.

10.1101/849802 — microbiology — Posted on 2019-11-21

1069 Endogenous polybasic peptides cause slower movement of ribosomes but are not targets of the ribosome quality control complex (RQC)

Barros, G. C.; Requiao, R. D.; Carneiro, R. L.; Masuda, C. A.; Moreira, M. H.; Rossetto, S.; Domitrovic, T.; Palhano, F.

10.1101/849851 — biochemistry — Posted on 2019-11-21

1070 Mechanisms of high-intensity sound exposure on inhibiting hippocampal long-term potentiation: role of brain-derived neurotrophic factor

de Deus, J. L.; Amorim, M. R.; Ribeiro, A. B.; Barcellos-Filho, P. G.; Ceballos, C. C.; Branco, L. G.; Cunha, A. S.; Leao, R. M.

10.1101/850214 — neuroscience — Posted on 2019-11-21

1071 Flexible recruitment of memory-based choice representations by human medial-frontal cortex

Minxha, J.; Adolphs, R.; Fusi, S.; Mamelak, A.; Rutishauser, U.

10.1101/809673 — neuroscience — Posted on 2019-11-21

1072 Active sampling in visual search is coupled to the cardiac cycle

Galvez-Pol, A.; McConnell, R.; Kilner, J. M.

10.1101/405902 — neuroscience — Posted on 2019-11-21

1073 alignparse: A Python package for parsing complex features from high-throughput long-read sequencing

Crawford, K. H.; Bloom, J. D.

10.1101/850404 — bioinformatics — Posted on 2019-11-21

1074 Enhancing network activation in Natural Killer cells: Predictions from in silico modeling

Makaryan, S. Z.; Finley, S. D.

10.1101/395756 — systems biology — Posted on 2019-11-21

1075 Unsupervised content-preserving transformation for optical microscopy

Li, X.; Zhang, G.; Wu, J.; Xie, H.; Lin, X.; Wang, H.; Qiao, H.; Dai, Q.

10.1101/848077 — bioinformatics — Posted on 2019-11-21

1076 Machine learning predicts immunoglobulin light chain toxicity through somatic mutations

Garofalo, M.; Piccoli, L.; Ravasio, S.; Foglierini, M.; Matkovic, M.; Sgrignani, J.; Prunotto, M.; Michielin, O.; Lanzavecchia, A.; Cavalli, A.

10.1101/849901 — bioinformatics — Posted on 2019-11-21

1077 JACOBI4 software for multivariate analysis of biological data

Polunin, D.; Shtaiger, I.; Efimov, V.

10.1101/803684 — bioinformatics — Posted on 2019-11-21

1078 Transcriptional profiling of potato (Solanum tuberosum L.) during a compatible interaction with the root-knot nematode, Meloidogyne javanica

Macharia, T. N.; Bellieny-Rabelo, D.; Moleleki, L. N.

10.1101/849414 — pathology — Posted on 2019-11-21

1079 SVJedi: Genotyping structural variations with long reads

Lecompte, L.; Peterlongo, P.; Lavenier, D.; Lemaitre, C.

10.1101/849208 — bioinformatics — Posted on 2019-11-21

1080 GraphProt2: A novel deep learning-based method for predicting binding sites of RNA-binding proteins

Uhl, M.; Tran, V. D.; Heyl, F.; Backofen, R.

10.1101/850024 — bioinformatics — Posted on 2019-11-21

1081 A short commentary on indents and edges of β-sheets

Khare, H.; Ramakumar, S.

10.1101/850982 — bioinformatics — Posted on 2019-11-21

1082 Biomarker2vec: Attribute- and Behavior-driven Representation for Multi-type Relationship Prediction between Various Biomarkers

Guo, Z.-H.; You, Z.-H.; Yanbin, W.; Yi, H.-C.

10.1101/849760 — bioinformatics — Posted on 2019-11-21

1083 Computing Skin Cutaneous Melanoma Outcome from the HLA-alleles and Clinical Characteristics

Dhall, A.; Patiyal, S.; Kaur, H.; Bhalla, S.; Arora, C.; Raghava, G. P. S.

10.1101/850677 — bioinformatics — Posted on 2019-11-21

1084 Compositional knockoff filter for high-dimensional regression analysis of microbiome data

Srinivasan, A.; Zhan, X.; Xue, L.

10.1101/851337 — bioinformatics — Posted on 2019-11-21

1085 Midgut aminopeptidase N expression profile in Castor semilooper during sublethal Cry toxin exposure

Chauhan, V. K.; Dhania, N. K.; Lokya, V.; Bhuvanachandra, B.; Padmasree, K.; Dutta-Gupta, A.

10.1101/849612 — zoology — Posted on 2019-11-21

1086 Polyploidization events shaped the transcription factor repertoires in legumes (Fabaceae)

Moharana, K. C.; Venancio, T. M.

10.1101/849778 — plant biology — Posted on 2019-11-21

1087 PBS3 and EPS1 complete salicylic acid biosynthesis from isochorismate in Arabidopsis

Torrens-Spence, M. P.; Bobokalonova, A.; Carballo, V.; Glinkerman, C. M.; Pluskal, T.; Shen, A.; Weng, J.-K.

10.1101/601948 — plant biology — Posted on 2019-11-21

1088 A highly sensitive and specific SYBR Green quantitative polymerase chain reaction (qPCR) method for rapid detection of scale drop disease virus in Asian sea bass, Lates calcarifer

Sriisan, S.; Boonchird, C.; Thitamadee, S.; Dong, H. T.; Senapin, S.

10.1101/849661 — molecular biology — Posted on 2019-11-21

1089 CtIP -mediated alternative mRNA splicing finetunes the DNA damage response

Prados-Carvajal, R.; Rodriguez-Real, G.; Gutierrez-Pozo, G.; Huertas, P.

10.1101/849547 — molecular biology — Posted on 2019-11-21

1090 Microbe-metabolite associations linked to the rebounding murine gut microbiome post-colonization with vancomycin resistant Enterococcus faecium

Mu, A.; Carter, G. P.; Li, L.; Isles, N. S.; Vrbanac, A. F.; Morton, J. T.; De Souza, D. P.; Narayana, V. K.; Kanojia, K.; Nijagal, B.; McConville, M. J.; Knight, R.; Howden, B. P.; Stinear, T. P.

10.1101/849539 — microbiology — Posted on 2019-11-21

1091 Gene-flow from steppe individuals into Cucuteni-Trypillia associated populations indicates long-standing contacts and gradual admixture

Immel, A.; Terna, S.; Simalcsik, A.; Susat, J.; Sarov, O.; Sirbu, G.; Hofmann, R.; Mueller, J.; Nebel, A.; Krause-Kyora, B.

10.1101/849422 — genomics — Posted on 2019-11-21

1092 Genetic diversity of tilapia lake virus genome segment 1 from 2011 to 2019 and a newly validated semi-nested RT-PCR method

Taengphu, S.; Sangsuriya, P.; Phiwsaiya, K.; Debnath, P. P.; Delamare-Deboutteville, J.; Mohan, C. V.; Dong, H. T.; Senapin, S.

10.1101/848903 — genetics — Posted on 2019-11-21

1093 Rapid Quantification of Peptide Oxidation Isomers from Complex Mixtures

Khaje, N. A.; Sharp, J. S.

10.1101/850032 — biochemistry — Posted on 2019-11-21

1094 A novel exosome biogenesis mechanism: multivesicular structures budding and rupturing at the plasma membrane

Leon Quinonez, S.; Brown, I. R.; Grimsley, H. E.; Cinatl, J.; Michaelis, M.; Hsu, C.

10.1101/849828 — cell biology — Posted on 2019-11-21

1095 Adversarial generation of gene expression data

Vinas Torne, R.; Andres Terre, H.; Lio', P.; Bryson, K.

10.1101/836254 — bioinformatics — Posted on 2019-11-21

1096 Ultrasound Echogenicity is Associated with Achilles Tendon Fatigue Damage in a Cadaveric Loading Model

Schmidt, E. C.; Hullfish, T. J.; O'Connor, K. M.; Hast, M. W.; Baxter, J. R.

10.1101/849943 — bioengineering — Posted on 2019-11-21

1097 The Statistical Foundations of Colour Space

Wilkins, L.

10.1101/849984 — animal behavior and cognition — Posted on 2019-11-21

1098 Cluster-permutation statistical analysis for high-dimensional brain-wide functional connectivity mapping

Sanchez Bornot, J. M.; Lopez, M. E.; Bruna, R.; Maestu, F.; Youssofzadeh, V.; Yang, S.; Prasad, G.; McClean, P.; Wong-Lin, K.

10.1101/849554 — neuroscience — Posted on 2019-11-21

1099 Stimulus contrast information modulates sensorimotor decision making in goldfish

Otero Coronel, S.; Martorell, N.; Beron de Astrada, M.; Medan, V.

10.1101/849521 — neuroscience — Posted on 2019-11-21

1100 Hippocampal subfield volumes in abstinent men and women with a history of alcohol use disorder

Sawyer, K. S.; Salz, D. M.; Adra, N.; Kemppainen, M. I.; Ruiz, S. M.; Harris, G. J.; Oscar-Berman, M.

10.1101/715292 — neuroscience — Posted on 2019-11-21

1101 High-throughput transposon sequencing highlights the cell wall as an important barrier for osmotic stress in methicillin resistant Staphylococcus aureus and underlines a tailored response to different osmotic stressors

Schuster, C. F.; Wiedemann, D. M.; Kirsebom, F. C. M.; Santiago, M.; Walker, S.; Grundling, A.

10.1101/690511 — microbiology — Posted on 2019-11-21

1102 Stromal cell-contact dependent PI3K and APRIL induced NF-κB signaling complement each other to prevent mitochondrial- and endoplasmic reticulum stress induced cell death of bone marrow plasma cells

Cornelis, R.; Hahne, S.; Taddeo, A.; Petkau, G.; Malko, D.; Durek, P.; Thiem, M.; Heiberger, L.; Mohr, E.; Klaeden, C.; Tokoyoda, K.; Siracusa, F.; Hoyer, B. F.; Hiepe, F.; Mashreghi, M.-F.; Melchers, F.; Chang, H.-D.; Radbruch, A.

10.1101/849638 — immunology — Posted on 2019-11-21

1103 Single cell tri-channel-processing reveals structural variation landscapes and complex rearrangement processes

Sanders, A. D.; Meiers, S.; Ghareghani, M.; Porubsky, D.; Jeong, H.; van Vliet, M. A. C. C.; Rausch, T.; Richter-Pechanska, P.; Kunz, J. B.; Jenni, S.; Bolognini, D.; Longo, G. M. C.; Raeder, B.; Kinanen, V.; Zimmermann, J.; Benes, V.; Schrappe, M.; Mardin, B. R.; Kulozik, A.; Bornhauser, B.; Bourquin, J.-P.; Marschall, T.; Korbel, J. O.

10.1101/849604 — genomics — Posted on 2019-11-21

1104 Climate associated genetic variation in Fagus sylvatica and potential responses to climate change in the French Alps.

Capblancq, T.; Morin, X.; Gueguen, M.; Renaud, J.; Lobreaux, S.; Bazin, E.

10.1101/849406 — evolutionary biology — Posted on 2019-11-21

1105 Winter in water: Differential responses and the maintenance of biodiversity

McMeans, B.; McCann, K.; Guzzo, M.; Bartley, T.; Bieg, C.; Blanchfield, P.; Fernandes, T.; Giacomini, H.; Middel, T.; Rennie, M.; Ridgway, M.; Shuter, B.

10.1101/849109 — ecology — Posted on 2019-11-21

1106 Electron beam lithography fabrication of SU-8 polymer structures for cell studies

Vinje, J.; Beckwith, K. S.; Sikorski, P.

10.1101/849745 — biophysics — Posted on 2019-11-21

1107 Dynamic sound field audiometry: static and dynamic spatial hearing tests in the full horizontal plane

Fischer, T.; Kompis, M.; Caversaccio, M.; Mantokoudis, G.; Wimmer, W.

10.1101/849836 — bioengineering — Posted on 2019-11-21

1108 C-terminal RRM/ACT domain is crucial for fine-tuning the activation of 'long' RelA-SpoT Homolog enzymes by ribosomal complexes

Takada, H.; Roghanian, M.; Dzhygyr, I.; Murayama, R.; Akanuma, G.; Atkinson, G. C.; Garcia-Pino, A.; Hauryliuk, V.

10.1101/849810 — biochemistry — Posted on 2019-11-21

1109 Light dependent activation of the GCN2 kinase under cold and salt stress is mediated by the photosynthetic status of the chloroplast

Lokdarshi, A.; Morgan, P. W.; Franks, M.; Emert, Z.; Emanuel, C.; von Arnim, A. G.

10.1101/849257 — plant biology — Posted on 2019-11-21

1110 TMS-induced motor activation increases visual awareness

Hobot, J.; Koculak, M.; Paulewicz, B.; Sandberg, K.; Wierzchon, M.

10.1101/848457 — neuroscience — Posted on 2019-11-21

1111 Phosphatidic acid produced by phospholipase D is required for hyphal cell-cell fusion and fungal-plant symbiosis

Hassing, B.; Eaton, C. J.; Winter, D. J.; Green, K. A.; Brandt, U.; Savoian, M. S.; Mesarich, C. H.; Fleissner, A.; Scott, B.

10.1101/849232 — genetics — Posted on 2019-11-21

1112 Characterization of Isoforms of the Ovine Granulocyte Colony Stimulating Factor

Li, R.; Chen, L.; Wang, Y.; Zhang, L.; Liu, T.; Nie, X.; He, H.; Wang, Y.; Wang, K.; Yang, R.; Duan, C.; Liu, Y.; Ma, R. Z.; Zhang, Y.

10.1101/849166 — genetics — Posted on 2019-11-21

1113 Detecting behavioral patterns for diagnosis and rehabilitation of visual neglect: a technology-enhanced version of the Baking Tray Task

Cerrato, A.; Pacella, D.; Palumbo, F.; Beauvais, D.; Ponticorvo, M.; Miglino, O.; Bartolomeo, P.

10.1101/849505 — neuroscience — Posted on 2019-11-21

1114 Chemokine receptors ACKR2 and CCR1 coordinate macrophage dynamics and mammary gland development

Wilson, G. J.; Fukuoka, A.; Love, S. R.; Kim, J.; Pingen, M.; Hayes, A. J.; Graham, G.

10.1101/747360 — immunology — Posted on 2019-11-21

1115 Genomic Characterization of SiGRFs in Foxtail Millet and SiGRF1-overexpression in Arabidopsis thaliana Promotes Plant Avoidance of Salt Stress

Liu, J.; Jiang, C.; Kang, L.; Zhang, C.; Song, Y.; Zheng, W.

10.1101/849398 — genomics — Posted on 2019-11-21

1116 IQ-TREE 2: New models and efficient methods for phylogenetic inference in the genomic era

Minh, B. Q.; Schmidt, H.; Chernomor, O.; Schrempf, D.; Woodhams, M.; von Haeseler, A.; Lanfear, R.

10.1101/849372 — evolutionary biology — Posted on 2019-11-21

1117 Linking lysosomal enzyme targeting genes and energy metabolism with altered gray matter volume in children with persistent stuttering

Chow, H. M.; Garnett, E. O.; Li, H.; Etchell, A. C.; Sepulcre, J.; Drayna, D.; Chugani, D. C.; Chang, S.-E.

10.1101/848796 — neuroscience — Posted on 2019-11-21

1118 Minimal genome-wide human CRISPR-Cas9 library

Goncalves, E.; Thomas, M.; Behan, F. M.; Picco, G.; Pacini, C.; Allen, F.; Parry-Smith, D.; Iorio, F.; Parts, L.; Yusa, K.; Garnett, M. J.

10.1101/848895 — genomics — Posted on 2019-11-21

1119 Frameshifts and wild-type protein sequences are always highly similar because the genetic code is optimal for frameshift tolerance

Wang, X.; Dong, Q.; Chen, G.; Zhang, J.; Liu, Y.; Cai, Y.

10.1101/067736 — genetics — Posted on 2019-11-21

1120 Structural characterization of tau in fuzzy tau:tubulin complexes

Fung, H. Y. J.; McKibben, K.; Ramirez, J.; Gupta, K.; Rhoades, E.

10.1101/647016 — biophysics — Posted on 2019-11-21

1121 The effect of anteroposterior perturbations on the control of the center of mass during treadmill walking

van den Bogaart, M.; van Dieen, J.; Bruijn, S.; Meyns, P.

10.1101/848853 — bioengineering — Posted on 2019-11-21

1122 Early vocal production and functional flexibility in wild infant chimpanzees

Dezecache, G.; Zuberbühler, K.; Davila-Ross, M.; Dahl, C. D.

10.1101/848770 — animal behavior and cognition — Posted on 2019-11-21

1123 Endogenous sugar level is associated with differential heat tolerance in onion bulb scales

Galsurker, O.; Kelly, G.; Doron-Faigenboim, A.; Aruchamy, K.; Salam, B. B.; Teper-Bamnolker, P.; Lers, A.; Eshel, D.

10.1101/848572 — plant biology — Posted on 2019-11-21

1124 DoUble resin Casting micro computed Tomography (DUCT) reveals biliary and vascular pathology in a mouse model of Alagille syndrome

Hankeova, S.; Salplachta, J.; Zikmund, T.; Kavkova, M.; Van Hul, N.; Brinek, A.; Smekalova, V.; Laznovsky, J.; Jaros, J.; Bryja, V.; Lendahl, U.; Ellis, E.; Hannezo, E.; Kaiser, J.; Andersson, E. R.

10.1101/848481 — pathology — Posted on 2019-11-21

1125 Disentangling functional connectivity effects of age and expertise in long-term meditators

Guidotti, R.; Del Gratta, C.; Perrucci, M. G.; Romani, G. L.; Raffone, A.

10.1101/848507 — neuroscience — Posted on 2019-11-21

1126 Complex evolutionary history of the Y chromosome in flies of the Drosophila obscura species group

Bracewell, R.; Bachtrog, D.

10.1101/848804 — evolutionary biology — Posted on 2019-11-21

1127 The nose is mightier than the tooth: larger male proboscis monkeys have smaller canines

Matsuda, I.; Stark, D. J.; Saldivar, D. A. R.; Tuuga, A.; Nathan, S. K. S. S.; Goossens, B.; van Schaik, C. P.; Koda, H.

10.1101/848515 — evolutionary biology — Posted on 2019-11-21

1128 Interneuron dysfunction in a new knock-in mouse model of SCN1A GEFS+

Das, A.; Zhu, B.; Xie, Y.; Zeng, L.; Pham, A. T.; Neumann, J. C.; MacGregor, G.; Schutte, S.; Hunt, R.; O'Dowd, D. K.

10.1101/849240 — neuroscience — Posted on 2019-11-21

1129 Origin of cooperativity in the activation of dimeric transcription factors

Welch, M.; Brasen, J. C.; Workman, C. T.; Sams, T.

10.1101/769661 — molecular biology — Posted on 2019-11-21

1130 Predicting Collapse of Complex Ecological Systems: Quantifying the Stability-Complexity Continuum

Pettersson, S.; Nilsson Jacobi, M.; Savage, V.

10.1101/713578 — ecology — Posted on 2019-11-21

1131 The Embodied Nature of Well-Timed Behavior

Safaie, M.; Jurado-Parras, M.-T.; Sarno, S.; Louis, J.; Karoutchi, C.; Petit, L. F.; Pasquet, M. O.; Eloy, C.; Robbe, D.

10.1101/716274 — animal behavior and cognition — Posted on 2019-11-21

1132 Understanding the interplay of sleep and aging: Methodological challenges

Muehlroth, B. E.; Werkle-Bergner, M.

10.1101/713552 — neuroscience — Posted on 2019-11-21

1133 Noradrenergic responsiveness supports selective attention across the adult life span

Dahl, M. J.; Mather, M. M.; Sander, M. C.; Werkle-Bergner, M.

10.1101/551879 — neuroscience — Posted on 2019-11-21

1134 Unraveling the relation between EEG-correlates of attentional orienting and sound localization performance: a diffusion model approach

Klatt, L.-I.; Schneider, D.; Schubert, A.-L.; Hanenberg, C.; Lewald, J.; Wascher, E.; Getzmann, S.

10.1101/616573 — neuroscience — Posted on 2019-11-21

1135 Two new polymorphic structures of alpha-synuclein solved by cryo-electron microscopy

Guerrero-Ferreira, R.; Taylor, N. M. I.; Arteni, A.-A.; Kumari, P.; Mona, D.; Ringler, P.; Britschgi, M.; Lauer, M. E.; Makky, A.; Verasdock, J.; Riek, R.; Melki, R.; Meier, B. H.; Bockmann, A.; Bousset, L.; Stahlberg, H.

10.1101/654582 — neuroscience — Posted on 2019-11-21

1136 An asymmetric sheath controls flagellar supercoiling and motility in the Leptospira spirochete

Sindelar, C. V.; Buschiazzo, A.; Ko, A.; Gibson, K. H.; Trajtenberg, F.; Brady, M.; Wunder, E.; San Martin, F.; Mechaly, A. E.; Shang, Z.; Liu, J.; Picardeau, M.

10.1101/847533 — biophysics — Posted on 2019-11-21

1137 Drought-induced mortality: stem diameter variation reveals a point of no return in lavender species

Lamacque, L.; Charrier, G.; dos Santos Farnese, F.; Lemaire, B.; Ameglio, T.; Herbette, S.

10.1101/848879 — plant biology — Posted on 2019-11-21

1138 Nav1.5 single-molecule localization reveals different reorganization modes at cardiomyocyte domains

Vermij, S.; Rougier, J.-S.; Agullo-Pascual, E.; Rothenberg, E.; Delmar, M.; Abriel, H.

10.1101/674275 — physiology — Posted on 2019-11-21

1139 Global transcriptome analysis reveals circadian control of splicing events in Arabidopsis thaliana

Romanowski, A.; Schlaen, R. G.; Perez-Santangelo, S.; Mancini, E.; Yanovsky, M. J.

10.1101/845560 — plant biology — Posted on 2019-11-21

1140 ProSPr: Democratized Implementation of Alphafold Protein Distance Prediction Network

Billings, W. M.; Hedelius, B.; Millecam, T.; Wingate, D.; Della Corte, D.

10.1101/830273 — biophysics — Posted on 2019-11-21

1141 Decoding and encoding models reveal the role of the depth of processing in the brain representation of meaning

Soto, D.; Sheikh, U. A.; Mei, N.; Santana, R.

10.1101/830448 — neuroscience — Posted on 2019-11-21

1142 Spatial attention and expectations rely on modality-specific and multisensory mechanisms

Zuanazzi, A.; Noppeney, U.

10.1101/847921 — neuroscience — Posted on 2019-11-21

1143 Fatty acid bioconversion in harpacticoid copepods in a changing environment: a transcriptomic approach

Boyen, J.; Fink, P.; Mensens, C.; Hablützel, P. I.; De Troch, M.

10.1101/797753 — ecology — Posted on 2019-11-21

1144 Direct detection of mRNA expression in microbial cells by fluorescence in situ hybridization using RNase H-assisted rolling circle amplification

Takahashi, H.; Horio, K.; Kato, S.; Kobori, T.; Watanabe, K.; Aki, T.; Nakashimada, Y.; Okamura, Y.

10.1101/729616 — microbiology — Posted on 2019-11-21

1145 The gut microbiota influences how circulating immune cells in humans change from one day to the next.

Schluter, J.; Peled, J. U.; Taylor, B. P.; Smith, M.; Markey, K. A.; Taur, Y.; Niehus, R.; Staffas, A.; Dai, A.; Fontana, E.; Amoretti, L. A.; Wright, R. J.; Morjaria, S.; Fenelus, M.; Pessin, M. S.; Chao, N. J.; Lew, M.; Bohannon, L.; Bush, A.; Sung, A. D.; Hohl, T. M.; Perales, M.-A.; van den Brink, M. R. M.; Xavier, J. B.

10.1101/618256 — microbiology — Posted on 2019-11-21

1146 The Reissner Fiber is Highly Dynamic in vivo and Controls Morphogenesis of the Spine

Troutwine, B. R.; Gontarz, P.; Minowa, R.; Monstad-Rios, A.; Konjikusic, M. J.; Sepich, D. S.; Kwon, R. Y.; Solnica-Krezel, L.; GRAY, R. S.

10.1101/847301 — genetics — Posted on 2019-11-21

1147 Immune-mediated genetic pathways resulting in pulmonary function impairment increase lung cancer susceptibility

Kachuri, L.; Johansson, M.; Rashkin, S. R.; Graff, R. E.; Bosse, Y.; Manem, V.; Caporaso, N. E.; Landi, M. T.; Christiani, D. C.; Vineis, P.; Liu, G.; Scelo, G.; Zaridze, D.; Shete, S. S.; Albanes, D.; Aldrich, M. C.; Tardon, A.; Rennert, G.; Chen, C.; Goodman, G. E.; Doherty, J. A.; Bickeboller, H.; Field, J. K.; Davies, M. P.; Teare, M. D.; Kiemeney, L. A.; Bojesen, S. E.; Haugen, A.; Zienolddiny, S.; Lam, S.; Le Marchand, L.; Cheng, I.; Schabath, M. B.; Duell, E. J.; Andrew, A. S.; Manjer, J.; Lazarus, P.; Arnold, S.; McKay, J. D.; Emami, N. C.; Warkentin, M. T.; Brhane, Y.; Obeidat, M.; Ma

10.1101/635318 — genetics — Posted on 2019-11-21

1148 Rod nuclear architecture determines contrast transmission of the retina and behavioral sensitivity in mice

Subramanian, K.; Weigert, M.; Borsch, O.; Petzold, H.; Garcia-Ulloa, A.; Myers, E. W.; Ader, M.; Solovei, I.; Kreysing, M.

10.1101/752444 — biophysics — Posted on 2019-11-21

1149 To what extent gene connectivity within co-expression network matters for phenotype prediction?

Chateigner, A.; Lesage-Descauses, M.-C.; Rogier, O.; Jorge, V.; Leple, J.-C.; Brunaud, V.; Paysant-Le Roux, C.; Soubigou-Taconnat, L.; Martin-Magniette, M.-L.; Sanchez, L.; Segura, V.

10.1101/523365 — genomics — Posted on 2019-11-21

1150 Fitness and community feedbacks: the two axes that drive long-term invasion impacts

Arnoldi, J.-F.; Barbier, M.; Kelly, R.; Barabas, G.; Jackson, A. L.

10.1101/705756 — ecology — Posted on 2019-11-21

1151 Beat-based and memory-based temporal expectations in rhythm: similar perceptual effects, different underlying mechanisms

Bouwer, F. L.; Honing, H.; Slagter, H. A.

10.1101/613398 — neuroscience — Posted on 2019-11-21

1152 SimpactCyan 1.0: An Open-source Simulator for Individual-Based Models in HIV Epidemiology with R and Python Interfaces

Liesenborgs, J.; Hendrickx, D. M.; Kuylen, E.; Niyukuri, D.; Hens, N.; Delva, W.

10.1101/440834 — epidemiology — Posted on 2019-11-21

1153 Relative toxicity of selected herbicides and household chemicals to earthworms

Mosqueda, E. G.; Adjesiwor, A. T.; Kniss, A. R.

10.1101/850222 — ecology — Posted on 2019-11-20

1154 Late-season surveys to document seed rain potential of Palmer amaranth (Amaranthus palmeri) and waterhemp (Amaranthus tuberculatus) in Texas cotton

Werner, K.; Sarangi, D.; Nolte, S.; Dotray, P.; Bagavathiannan, M.

10.1101/850172 — plant biology — Posted on 2019-11-20

1155 Controlling a robotic arm for functional tasks using a wireless head-joystick: A case study of a child with congenital absence of upper and lower limbs

Aspelund, S.; Patel, P.; Lee, M.-H.; Kagerer, F.; Ranganathan, R.; Mukherjee, R.

10.1101/850123 — neuroscience — Posted on 2019-11-20

1156 Loss of family with sequence similarity 13, member A exacerbates pulmonary hypertension through accelerating endothelial-to-mesenchymal transition

Rinastiti, P.; Ikeda, K.; Rahardini, E. P.; Miyagawa, K.; Tamada, N.; Kuribayashi, Y.; Hirata, K.-i.; Emoto, N.

10.1101/850115 — molecular biology — Posted on 2019-11-20

1157 Role of microRNA-21 in hypertrophic cardiac remodeling

Watanabe, K.; Narumi, T.; Watanabe, T.; Otaki, Y.; Takahashi, T.; Aono, T.; Goto, J.; Toshima, T.; Sugai, T.; Wanezaki, M.; Kutsuzawa, D.; Kato, S.; Tamura, H.; Nishiyama, S.; Takahashi, H.; Arimoto, T.; Shishido, T.; Watanabe, M.

10.1101/850156 — molecular biology — Posted on 2019-11-20

1158 Cyniclomyces guttulatus is an opportunistic pathogen in rabbits with coccidiosis

Tuanyuan, S.; Hongchao, S.; Yuan, F.; Lili, H.; Yongxue, Z.; Yan, L.; Guolian, B.; Xun, S.

10.1101/850230 — microbiology — Posted on 2019-11-20

1159 A Zika Virus Primary Isolate Induces Neuroinflammation, Compromises the Blood-Brain Barrier, and Upregulates CXCL12 in Adult Macaques

Panganiban, A.; Blair, R. V.; Hattler, J. B.; Bohannon, D. G.; Bonaldo, M. C.; Schouest, B.; Maness, N. J.; Kim, W.-K.

10.1101/850198 — microbiology — Posted on 2019-11-20

1160 Pseudomonas aeruginosa core metabolism exerts a widespread growth-independent control on virulence

Panayidou, S.; Georgiades, K.; Christofi, T.; Tamana, S.; Promponas, V.; Apidianakis, Y.

10.1101/850206 — microbiology — Posted on 2019-11-20

1161 Genetic deletion of Autotaxin from CD11b+ cells decreases the severity of experimental autoimmune encephalomyelitis

Ninou, I.; Sevastou, I.; Magkrioti, C.; Kaffe, E.; Stamatakis, G.; Thivaios, S.; Panayotou, G.; Aoki, J.; Kollias, G.; Aidinis, V.

10.1101/850149 — immunology — Posted on 2019-11-20

1162 Structural variation, functional differentiation and expression characteristics of the AP2/ERF gene family and its response to cold stress and methyl jasmonate in Panax ginseng C.A. Meyer

chen, J.; Zhou, Y.; Zhang, Q.; Li, L.; Sun, C.; Wang, K.; Wang, Y.; Han, Y.; Zhao, M.; Li, H.; chen, P.; Li, R.; Lei, J.; Wang, Y.; Zhang, M.

10.1101/850164 — genomics — Posted on 2019-11-20

1163 Estrogen receptor β exerts tumor suppressive effects in prostate cancer through repression of androgen receptor activity

Strom, A. M.; Chaurasiya, S.; Widmann, S. M.; Botero, C. M.; Lin, C.-Y.; Gustafsson, J.-A.

10.1101/850180 — cancer biology — Posted on 2019-11-20

1164 FOntCell: Fusion of Ontologies of Cells

Cabau-Laporta, J.; Ascension, A. M.; Arrospide-Elgarresta, M.; Gerovska, D.; Arauzo-Bravo, M. J.

10.1101/850131 — bioinformatics — Posted on 2019-11-20

1165 The evolution of dengue-2 viruses in Malindi, Kenya and greater East Africa: epidemiological and immunological implications

Pollett, S.; Gathii, K.; Figueroa, K.; Rutvisuttinunt, W.; Srikanth, A.; Nyataya, J.; Mutai, B.; Awinda, G.; Jarman, R. G.; Maljkovic Berry, I.; Waitumbi, J. N.

10.1101/850107 — genomics — Posted on 2019-11-20

1166 Is HSPG2 a modifier gene for Marfan syndrome?

Gerdes Gyuricza, I.; Barbosa de Souza, R.; Farinha-Arcieri, L. E.; Ribeiro Fernandes, G.; Pereira, L.

10.1101/849133 — genetics — Posted on 2019-11-20

1167 Network analysis reveals a distinct axis of macrophage activation in response to conflicting inflammatory cues

Liu, X.; Zhang, J.; Nelson, A. R.; Zeigler, A. C.; Lindsey, M. L.; Saucerman, J. J.

10.1101/844464 — systems biology — Posted on 2019-11-20

1168 Structure-based design of a Cortistatin analog with improved immunoregulatory activity against inflammatory bowel disease (IBD)

Rol, A.; Todorovski, T.; Martin-Malpartida, P.; Escola, A.; Gonzalez-Rey, E.; Aragon, E.; Verdaguer, X.; Valles-Miret, M.; Farrera-Sinfreu, J.; Puig, E.; Fernandez-Carneado, J.; Ponsati, B.; Delgado, M.; Riera, A.; Macias, M. J.

10.1101/839787 — molecular biology — Posted on 2019-11-20

1169 Context-dependent role of vinculin in neutrophil adhesion, motility and trafficking

Wilson, Z. S.; Witt, H.; Hazlett, L.; Harman, M.; Neumann, B. M.; Whitman, A.; Patel, M.; Ross, R. S.; Franck, C.; Reichner, J. S.; Lefort, C. T.

10.1101/847780 — immunology — Posted on 2019-11-20

1170 Cold and distant: structural features of the nucleoprotein complex of a cold-adapted influenza A virus strain

Shvetsov, A.; Lebedev, D.; Zabrodskaya, Y.; Shaldzhyan, A.; Egorova, M.; Vinogradova, D.; Konevega, A.; Gorshkov, A.; Ramsay, E.; Radulescu, A.; Sergeeva, M.; Plotnikova, M.; Komissarov, A.; Taraskin, A.; Lebedev, K.; Garmay, Y.; Kuznetsov, V.; Isaev-Ivanov, V.; Vasin, A.; Tsybalova, L.; Egorov, V.

10.1101/847608 — biophysics — Posted on 2019-11-20

1171 Human-specific regulatory features of brain development manifest staggering breadth of associations with physiological processes and pathological conditions of H. sapiens

Glinsky, G.

10.1101/848762 — genomics — Posted on 2019-11-20

1172 Oncologic Therapy Shapes the Fitness Landscape of ClonalHematopoiesis

Bolton, K. L.; Ptashkin, R. N.; Gao, T.; Braunstein, L.; Devlin, S. M.; Kelly, D.; Patel, M.; Berthon, A.; Syed, A.; Yabe, M.; Coombs, C.; Caltabellotta, N. M.; Walsh, M.; Offit, K.; Stadler, Z.; Mandelker, D.; Schulman, J. W.; Patel, A.; Philip, J.; Bernard, E.; Gundem, G.; Arango, J. E.; Levine, M.; Medina, J. S.; Farnhoud, N.; Glodzik, D.; Li, S.; Robson, M. E.; Lee, C.; Pharoah, P.; Stopsack, K.; Spitzer, B.; Mantha, S.; Fagin, J.; Boucai, L.; Gibson, C. J.; Ebert, B. L.; Young, A. L.; Druley, T.; Takahashi, K.; Gillis, N.; Ball, M.; Padron, E.; Hyman, D. M.; Baselga, J.; Norton, L.; Gardo

10.1101/848739 — genetics — Posted on 2019-11-20

1173 Acclimation, priming and memory in the response of Arabidopsis thaliana seedlings to cold stress

Leuendorf, J. E.; Frank, M.; Schmulling, T.

10.1101/848606 — plant biology — Posted on 2019-11-20

1174 Combining single- and repeated-visit occupancy models to make the best of monitoring surveys

Lauret, V.; Labach, H.; Authier, M.; Gimenez, O.

10.1101/848663 — ecology — Posted on 2019-11-20

1175 Sex differences in alternative reproductive tactics in response to predation risk in tree crickets

Torsekar, V. R.; Balakrishnan, R.

10.1101/848630 — ecology — Posted on 2019-11-20

1176 Statistical inference of mechanistic models from qualitative data using an efficient optimal scaling approach

Schmiester, L.; Weindl, D.; Hasenauer, J.

10.1101/848648 — systems biology — Posted on 2019-11-20

1177 Characterisation of the ERF102 to ERF105 genes of Arabidopsis thaliana and their role in the response to cold stress

Illgen, S.; Zintl, S.; Zuther, E.; Hincha, D.; Schmulling, T.

10.1101/848705 — plant biology — Posted on 2019-11-20

1178 FUS gene is dual-coding with both proteins united in molecular hallmarks of amyotrophic lateral sclerosis

Brunet, M. A.; Jacques, J.-F.; Nassari, S.; Tyzack, G. E.; McGoldrick, P.; Zinman, L.; Jean, S.; Robertson, J.; Patani, R.; Roucou, X.

10.1101/848580 — genetics — Posted on 2019-11-20

1179 Learning of complex auditory patterns changes intrinsic and feedforward effective connectivity between Heschl's gyrus and planum temporale

Lumaca, M.; Dietz, M. J.; Hansen, N. C.; Quiroga-Martinez, D. R.; Vuust, P.

10.1101/848416 — neuroscience — Posted on 2019-11-20

1180 Study of human origin and migration from a novel genomic footprint derived from mitochondrial sequences

Mahapatra, A.; Mukherjee, J.

10.1101/848341 — evolutionary biology — Posted on 2019-11-20

1181 Unsupervised Bayesian Ising Approximation for revealing the neural dictionary in songbirds

Hernandez, D. G.; Sober, S. J.; Nemenman, I.

10.1101/849034 — biophysics — Posted on 2019-11-20

1182 Spatial attention and expectations rely on modality-specific and multisensory mechanisms

Zuanazzi, A.; Noppeney, U.

10.1101/847921 — neuroscience — Posted on 2019-11-20

1183 Time is vision: functional preservation and enhanced capacity for recovery in subacute occipital stroke

Saionz, E. L.; Tadin, D.; Melnick, M. D.; Huxlin, K. R.

10.1101/847954 — neuroscience — Posted on 2019-11-20

1184 Geographically structured genomic diversity of non-human primate-infecting Treponema pallidum subsp. pertenue

Mubemba, B.; Gogarten, J. F.; Schuenemann, V.; Duex, A.; Lang, A.; Nowak, K.; Pleh, K.; Reiter, E.; Ulrich, M.; Agbor, A.; Brazzola, G.; Deschner, T.; Dieguez, P.; Granjon, A.-C.; Jones, S.; Junker, J.; Wessling, E.; Arandjelovic, M.; Kuehl, H.; Wittig, R. M.; Leendertz, F. H.; Calvignac-Spencer, S.

10.1101/848382 — genomics — Posted on 2019-11-20

1185 Long read sequencing of 1,817 Icelanders provides insight into the role of structural variants in human disease

Beyter, D.; Ingimundardottir, H.; Eggertsson, H.; Bjornsson, E.; Kristmundsdottir, S.; Mehringer, S.; Jonsson, H.; Hardarson, M. T.; Magnusdottir, D. N.; Kristjansson, R. P.; Gudjonsson, S. A.; Sverrisson, S. T.; Holley, G.; Eyjolfsson, G.; Olafsson, I.; Sigurdardottir, O.; Masson, G.; Thorsteinsdottir, U.; Gudbjartsson, D. F.; Sulem, P.; Magnusson, O. T.; Halldorsson, B. V.; Stefansson, K.

10.1101/848366 — genetics — Posted on 2019-11-20

1186 Integer linear programming outperforms simulated annealing for solving conservation planning problems

Schuster, R.; Hanson, J. O.; Strimas-Mackey, M.; Bennett, J.

10.1101/847632 — ecology — Posted on 2019-11-20

1187 Structure and activation mechanism of the BBSome membrane-protein trafficking complex

Brown, A.; Singh, S. K.; Gui, M.; Koh, F.; Yip, M. C.

10.1101/849877 — biophysics — Posted on 2019-11-20

1188 Investigation of an LPA KIV-2 nonsense mutation in 11,000 individuals: the importance of linkage disequilibrium structure in LPA genetics.

Di Maio, S.; Streiter, G.; Grueneis, R.; Lamina, C.; Maglione, M.; Öfner, D.; Thorand, B.; Peters, A.; Eckardt, K.-U.; Köttgen, A.; Kronenberg, F.; Coassin, S.

10.1101/848945 — genetics — Posted on 2019-11-20

1189 Combining Focused Identification of Germplasm and Core Collection Strategies to Identify Genebank Accessions for Central European Soybean Breeding

Haupt, M.; Schmid, K. J.

10.1101/848978 — plant biology — Posted on 2019-11-20

1190 A synthetic likelihood solution to the silent synapse estimation problem

Lynn, M. B.; Lee, K. F. H.; Soares, C.; Naud, R.; Beique, J.-C.

10.1101/781898 — neuroscience — Posted on 2019-11-20

1191 Solo acylhomoserine lactone synthase from predatory myxobacterium suggests beneficial participation in interspecies cross talk

Albataineh, H.; Duke, M.; Misra, S. K.; Sharp, J. S.; Stevens, D. C.

10.1101/849075 — microbiology — Posted on 2019-11-20

1192 Semaphorin 3A induces cytoskeletal paralysis in tumor-specific CD8+ T cells

Barnkob, M. B.; Michaels, Y. S.; Andre, V.; Macklin, P. S.; Gileadi, U.; Valvo, S.; Rei, M.; Kulicke, C.; Chen, J.-L.; Jain, V.; Woodcock, V.; Colin-York, H.; Hadjinicolaou, A. V.; Kong, Y.; Mayya, V.; Bull, J. A.; Rijal, P.; Pugh, C. W.; Townsend, A.; Olsen, L. R.; Fritzsche, M.; Fulga, T. A.; Dustin, M. L.; Jones, E. Y.; Cerundolo, V.

10.1101/849083 — immunology — Posted on 2019-11-20

1193 The contribution of lincRNAs at the interface between cell cycle regulation and cell state maintenance

Biasini, A.; Smith, A. A. T.; Abdulkarim, B.; Tan, J. Y.; Ferreira da Silva, M.; Marques, A.

10.1101/848333 — genomics — Posted on 2019-11-20

1194 Branch point control at malonyl-CoA node: A computational framework to optimize the controller architecture toward ideal metabolic switches

Xu, P.

10.1101/847947 — synthetic biology — Posted on 2019-11-20

1195 RNA recognition by the E2 subunit of the chloroplast pyruvate dehydrogenase complex from Chlamydomonas

Neusius, D.; Kleinknecht, L.; Bohne, A.-V.; Nickelsen, J.

10.1101/831339 — plant biology — Posted on 2019-11-20

1196 Automated cot-side tracking of functional brain age in preterm infants with routine EEG monitoring

Stevenson, N. J.; Oberdorfer, L.; Tataranno, M.-L.; Breakspear, M.; Colditz, P. B.; de Vries, L. S.; Benders, M. J.; Klebermass-Schrehof, K.; Vanhatalo, S.; Roberts, J. A.

10.1101/848218 — neuroscience — Posted on 2019-11-20

1197 Determination of Cas9/dCas9 associated toxicity in microbes

Misra, C. S.; Bindal, G.; Sodani, M.; Wadhawan, S.; Kulkarni, S.; Gautam, S.; Mukhopadhyaya, R.; Rath, D.

10.1101/848135 — microbiology — Posted on 2019-11-20

1198 Mitochondrial DNA Copy Number and Incident Atrial Fibrillation

Zhao, D.; Bartz, T.; Sotoodehnia, N.; Post, W.; Heckbert, S.; Alonso, A.; Longchamps, R. J.; Castellani, C. A.; Hong, Y. S.; Rotter, J. I.; Lin, H.; O'Rourke, B.; Pankratz, N.; Lane, J.; Yang, S.; Guallar, E.; Arking, D.

10.1101/848085 — genetics — Posted on 2019-11-20

1199 Catalytic inhibition of H3K9me2 writers disturbs epigenetic marks during bovine nuclear reprogramming.

Sampaio, R. V.; Sangalli, J. R.; De Bem, T. H.; Ambrizi, D. R.; del Collado, M.; Bridi, A.; Avila, A. C.; Macabelli, C. H.; Oliveira, L. J.; da Silveira, J. C.; Chiaratti, M. R.; Perecin, F.; Bressan, F. F.; Smith, L. C.; Ross, P. J.; Meirelles, F. V.

10.1101/847210 — developmental biology — Posted on 2019-11-20

1200 C9orf72-derived arginine-containing dipeptide repeats associate with axonal transport machinery and impede microtubule-based motility

Fumagalli, L.; Young, F. L.; Boeynaems, S.; De Decker, M.; Mehta, A. R.; Swijsen, A.; Fazal, R.; Guo, W.; Moisse, M.; Beckers, J.; Dedeene, L.; Selvaraj, B. T.; Vandoorne, T.; Madan, V.; van Blitterswijk, M.; Raitcheva, D.; McCampbell, A.; Poesen, K.; Gitler, A. D.; Koch, P.; Vanden Berghe, P.; Thal, D. R.; Verfaillie, C.; Chandran, S.; Van Den Bosch, L.; Bullock, S.; Van Damme, P.

10.1101/835082 — neuroscience — Posted on 2019-11-20

1201 Rewetting of three drained peatlands drives congruent compositional changes in pro- and eukaryotic microbiomes through environmental filtering

Weil, M.; Wang, H.; Bengtsson, M. M.; Jurasinski, G.; Negassa, W.; Couwenberg, J.; Zak, D.; Urich, T.

10.1101/848192 — microbiology — Posted on 2019-11-20

1202 Transplacentally mediated immune training to accelerate fetal immune competence

Mincham, K. T.; Jones, A. C.; Bodinier, M.; Scott, N. M.; Lauzon-Joset, J.-F.; Stumbles, P. A.; Bosco, A.; Holt, P. G.; Strickland, D. H.

10.1101/848242 — immunology — Posted on 2019-11-20

1203 A Trypanosoma brucei ORFeome-based Gain-of-Function Library reveals novel genes associated with melarsoprol resistance

Carter, M.; Kim, H.-S.; Gomez, S.; Gritz, S.; Larson, S.; Schulz, D.; Hovel-Miner, G.

10.1101/849042 — genetics — Posted on 2019-11-20

1204 Do genetic differences in growth thermal reaction norms maintain genetic variation in timing of diapause induction?

Fossen, E. I. F.; Raeymaekers, J.; Einum, S.

10.1101/849059 — evolutionary biology — Posted on 2019-11-20

1205 A two-lane mechanism for selective biological ammonium transport

Williamson, G.; Tamburrino, G.; Dias Mirandela, G.; Boeckstaens, M.; Bade, M.; Pisliakov, A.; Ives, C. M.; Terras, E.; Bizior, A.; Hoskisson, P. A.; Marini, A.-M.; Zachariae, U.; Javelle, A.

10.1101/849562 — biochemistry — Posted on 2019-11-20

1206 Adiponectin Receptor Fragmentation in Mouse Models of Type 1 and Type 2 Diabetes

Pugia, M.; Frabutt, D.; Stull, N.; Tersey, S.; Scheuner, D.; Pineros Alverez, A. R.; Mastracci, T.

10.1101/849000 — pathology — Posted on 2019-11-20

1207 Regional and hemispheric susceptibility of the temporal lobe to FTLD-TDP-43-C pathology

Borghesani, V.; Battistella, G.; Mandelli, M. L.; Welch, A.; Weis, E.; Younes, K.; Neuhaus, J.; Grinberg, L. T.; Seeley, W. W.; Spina, S.; Miller, B. L.; Miller, Z.; Gorno-Tempini, M. L.

10.1101/847582 — neuroscience — Posted on 2019-11-20

1208 Stereological characterization of the major cell lineages in the mouse dorsal dentate gyrus

Rieskamp, J. D.; Sarchet, P.; Smith, B. M.; Kirby, E. D.

10.1101/847350 — neuroscience — Posted on 2019-11-20

1209 Statistical analysis and optimality of biological systems

Mlynarski, W.; Hledik, M.; Sokolowski, T. R.; Tkacik, G.

10.1101/848374 — neuroscience — Posted on 2019-11-20

1210 Load-dependent modulation of alpha oscillations during working memory encoding and retention in young and older adults

Sghirripa, S.; Graetz, L.; Merkin, A.; Rogasch, N. C.; Semmler, J. G.; Goldsworthy, M. R.

10.1101/848127 — neuroscience — Posted on 2019-11-20

1211 Robotic light touch assists human balance control during maximum forward reaching

Johannsen, L.; Potwar, K.; Saveriano, M.; Endo, S.; Lee, D.

10.1101/848432 — neuroscience — Posted on 2019-11-20

1212 Adolescent substance use and functional connectivity between the ventral striatum and hippocampus

Huntley, E. D.; Marusak, H. A.; Berman, S. E.; Zundel, C. G.; Hatfield, J. R.; Keating, D. P.; Rabinak, C. A.

10.1101/847749 — neuroscience — Posted on 2019-11-20

1213 Tn3-associated toxin-antitoxin gene pairs appear to be an integral part of the transposition module

Lima-Mendez, G.; Oliveira Alvarenga, D.; Ross, K.; Hallet, B. G.; Van Melderen, L.; Varani, A. M.; Chandler, M.

10.1101/848275 — microbiology — Posted on 2019-11-20

1214 Wolbachia successfully replicate in a newly established horn fly, Haematobia irritans irritans (L.) (Diptera: Muscidae) cell line

Madhav, M.; Brown, G.; Morgan, J. A. T.; Asgari, S.; McGraw, E. A.; Munderloh, U. G.; Kurtti, T. J.; James, P.

10.1101/847962 — microbiology — Posted on 2019-11-20

1215 Comparative metatranscriptomics of periodontitis supports a common polymicrobial shift in metabolic function and identifies novel putative disease-associated ncRNAs

Ram Mohan, N.; Meyer, M. M.

10.1101/847889 — microbiology — Posted on 2019-11-20

1216 openPrimeR for multiplex amplification of highly diverse templates

Kreer, C.; Doering, M.; Lehnen, N.; Ercanoglu, M. S.; Gieselmann, L.; Luca, D.; Jain, K.; Schommers, P.; Pfeifer, N.; Klein, F.

10.1101/847574 — immunology — Posted on 2019-11-20

1217 Loss of pseudouridine synthases in the RluA family causes hypersensitive nociception in Drosophila

Song, W.; Tracey, W. D.

10.1101/831917 — genetics — Posted on 2019-11-20

1218 Coessential Genetic Networks Reveal the Organization and Constituents of a Dynamic Cellular Stress Response

10.1101/847996 — genetics — Posted on 2019-11-20

1219 The origin and spread of locally adaptive seasonal camouflage in snowshoe hares

Jones, M. R.; Mills, L. S.; Jensen, J. D.; Good, J. M.

10.1101/847616 — evolutionary biology — Posted on 2019-11-20

1220 Fungal communities (Mycobiome) as potential ecological indicators within confluence stretch of Ganges and Yamuna Rivers, India

P, R. S.; Rajput, V.; Shah, M.; Yadav, R.; Sarode, P.; Dastager, S.; Khairnar, K.; DHARNE, M.

10.1101/848259 — ecology — Posted on 2019-11-20

1221 Pits and CtBP control tissue growth in Drosophila melanogaster with the Hippo pathway transcription repressor, Tgi.

Vissers, J. H.; Dent, L. G.; House, C. M.; Kondo, S.; Harvey, K. F.

10.1101/847707 — developmental biology — Posted on 2019-11-20

1222 Peripheral Nerve Repair Using Tissue Engineered Living Scaffolds Comprised of Stretch-Grown Aligned Axonal Tracts Promotes Survival of Spinal Cord Motor Neurons

Maggiore, J. C.; Burrell, J. C.; Browne, K. D.; Katiyar, K. C.; Laimo, F. A.; Ali, Z.; Kaplan, H. M.; Rosen, J. M.; Cullen, D. K.

10.1101/847988 — bioengineering — Posted on 2019-11-20

1223 Type 2 Diabetes: One Disease, Many Pathways

Sherman, A.; Ha, J.

10.1101/648816 — physiology — Posted on 2019-11-20

1224 Restriction of essential amino acids dictates the systemic response to dietary protein dilution

Yap, Y. W.; Rusu, P. M.; Chan, A. Y.; Fam, B. C.; Jungmann, A.; Solon-Biet, S. M.; Barlow, C. K.; Creek, D. J.; Huang, C.; Schittenhelm, R. B.; Morgan, B.; Schmoll, D.; Kiens, B.; Piper, M. D.; Heikenwalder, M.; Simpson, S. J.; Broer, S.; Andrikopoulos, S.; Muller, O. J.; Rose, A. J.

10.1101/848143 — physiology — Posted on 2019-11-20

1225 Pharmacological complementation remedies an inborn error of lipid metabolism

Hartley, M. D.; Shokat, M. D.; DeBell, M. J.; Banerji, T.; Kirkemo, L. L.; Scanlan, T. S.

10.1101/848119 — pharmacology and toxicology — Posted on 2019-11-20

1226 Investigation of working memory networks for verbal and rhythmic stimuli

Hoddinott, J. D.; Schuit, D.; Grahn, J. A.

10.1101/847038 — neuroscience — Posted on 2019-11-20

1227 Analysis of regulatory element evolution between human and mouse reveals a lack of cis-trans compensation

Mattioli, K.; Oliveros, W.; Gerhardinger, C.; Andergassen, D.; Maass, P. G.; Rinn, J. L.; Mele, M.

10.1101/847491 — genomics — Posted on 2019-11-20

1228 Gendered Fitness Interests: A Method Partitioning the Effects of Family Composition on Socio-Political Attitudes and Behaviors

Brooks, R. C.; Blake, K. R.

10.1101/847814 — evolutionary biology — Posted on 2019-11-20

1229 A large-scale assessment of lake bacterial communities reveals pervasive impacts of human activities

Kraemer, S.; da Costa, N. B.; Shapiro, B. J.; Huot, Y.; Walsh, D. A.

10.1101/821991 — ecology — Posted on 2019-11-20

1230 Modeling motor-evoked potentials from neural field simulations of transcranial magnetic stimulation

Wilson, M. T.; Moezzi, B.; Rogasch, N. C.

10.1101/847830 — biophysics — Posted on 2019-11-20

1231 Analytical solution for a hybrid Logistic-Monod cell growth model in batch and CSTR culture

Xu, P.

10.1101/847939 — bioengineering — Posted on 2019-11-20

1232 Targeting the resolvin E1 - eicosapentaenoic acid axis improves hyperinsulinemia and hyperglycemia in a host genetic dependent manner

Pal, A.; Al-Shaer, A. E.; Guesdon, W.; Torres, M. J.; Armstrong, M.; Quinn, K.; Davis, T.; Reisdorph, N.; Neufer, P. D.; Spangenburg, E. E.; Carroll, I.; Bazinet, R. P.; Claria, J.; Shaikh, S. R.

10.1101/848093 — biochemistry — Posted on 2019-11-20

1233 In vivo directed evolution of AAV in the primate retina

Byrne, L. C.; Day, T. P.; Visel, M.; Fortuny, C.; Dalkara, D.; Merigan, W. H.; Schaffer, D. V.; Flannery, J. G.

10.1101/847459 — neuroscience — Posted on 2019-11-20

1234 Disrupted serial dependence suggests deficits in synaptic potentiation in anti-NMDAR encephalitis and schizophrenia

Stein, H.; Barbosa, J.; Rosa-Justicia, M.; Prades, L.; Morato, A.; Galan, A.; Arino, H.; Martinez-Hernandez, E.; Castro-Fornieles, J.; Dalmau, J.; Compte, A.

10.1101/830471 — neuroscience — Posted on 2019-11-20

1235 Robust foreground detection in somatic copy number data

Deshpande, A. S.; Walradt, T.; Hu, Y.; Koren, A.; Imielinski, M.

10.1101/847681 — genomics — Posted on 2019-11-20

1236 A principal component approach to improve association testing with polygenic risk scores

Coombes, B. J.; Biernacka, J. M.

10.1101/847020 — genetics — Posted on 2019-11-20

1237 Maternal Effect Senescence and Fitness: A Demographic Analysis of a Novel Model Organism

Hernandez, C. M.; van Daalen, S. F.; Caswell, H.; Neubert, M. G.; Gribble, K. E.

10.1101/847640 — evolutionary biology — Posted on 2019-11-20

1238 Linked networks reveal dual roles of insect dispersal and species sorting for bacterial communities in flowers

Zemenick, A. T.; Vannette, R. L.; Rosenheim, J. A.

10.1101/847376 — ecology — Posted on 2019-11-20

1239 Testes of DAZL null sheep lack spermatogonia and maintain normal somatic cells

McLean, Z.; Appleby, S. J.; Wei, J.; Snell, R. G.; Oback, B.

10.1101/848036 — developmental biology — Posted on 2019-11-20

1240 Regeneration comes for free with biological development in a generative Boolean model

Mani, S.; Tlusty, T.

10.1101/843888 — developmental biology — Posted on 2019-11-20

1241 Signal to Noise Ratio as a Cross-Platform Metric for Intraoperative Fluorescence Imaging

Gharia, A.; Philip Papageorgiou, E. P.; Giverts, S. D.; Park, C.; Anwar, M.

10.1101/847863 — bioengineering — Posted on 2019-11-20

1242 Neural correlates of evidence and urgency during human perceptual decision-making in dynamically changing conditions

Yau, Y.; Dadar, M.; Taylor, M.; Zeighami, Y.; Fellows, L.; Cisek, P.; Dagher, A.

10.1101/847756 — neuroscience — Posted on 2019-11-20

1243 Meta-control of the exploration-exploitation dilemma emerges from probabilistic inference over a hierarchy of time scales

Markovic, D.; Goschke, T.; Kiebel, S. J.

10.1101/847566 — neuroscience — Posted on 2019-11-20

1244 Zoonotic tuberculosis in India: looking beyond Mycobacterium bovis

Duffy, S. C.; Srinivasan, S.; Schilling, M. A.; Stuber, T.; Danchuk, S. N.; Michael, J. S.; Venkatesan, M.; Bansal, N.; Maan, S.; Jindal, N.; Chaudhary, D.; Dandapat, P.; Katani, R.; Chothe, S.; Veerasami, M.; Robbe-Austerman, S.; Juleff, N.; Kapur, V.; Behr, M. A.

10.1101/847715 — microbiology — Posted on 2019-11-20

1245 Relative genomic impacts of translocation history, hatchery practices, and farm selection in Pacific oyster Crassostrea gigas throughout the Northern Hemisphere

Sutherland, B. J. G.; Rycroft, C.; Ferchaud, A.-L.; Saunders, R.; Li, L.; Liu, S.; Chan, A. M.; Otto, S.; Suttle, C. A.; Miller, K. M.

10.1101/847467 — genetics — Posted on 2019-11-20

1246 On the efficacy of restoration in stream networks: comments and critiques

Murray-Stoker, D.

10.1101/611939 — ecology — Posted on 2019-11-20

1247 Enhanced maturation of human stem cell derived cortical interneurons by mTOR activation

Chu, J.; Fitzgerald, M. L.; Sehgal, N.; Manley, W.; Fitzgerald, S.; Naung, H.; Goldberg, E. M.; Anderson, S. A.

10.1101/777714 — neuroscience — Posted on 2019-11-20

1248 Altered functional connectivity during speech perception in congenital amusia

Jasmin, K.; Dick, F.; Stewart, L.; Tierney, A. T.

10.1101/834366 — neuroscience — Posted on 2019-11-20

1249 Functional connectome analyses reveal a highly optimized human olfactory network

Arnold, T. C.; You, Y.; Ding, M.; Zuo, X.-N.; de Araujo, I. E.; Li, W.

10.1101/843532 — neuroscience — Posted on 2019-11-20

1250 A Division of Labor in the Recruitment and TopologicalOrganization of a Bacterial Morphogenic Complex

Caccamo, P. D.; Jacq, M.; VanNieuwenhze, M. S.; Brun, Y. V.

10.1101/847335 — microbiology — Posted on 2019-11-20

1251 Temporal Transcriptome and Promoter Architecture ofthe African Swine Fever Virus

Cackett, G.; Matelska, D.; Sykora, M.; Portugal, R.; Malecki, M.; Bähler, J.; Dixon, L.; Werner, F.

10.1101/847343 — genomics — Posted on 2019-11-20

1252 The Reissner Fiber is Highly Dynamic in vivo and Controls Morphogenesis of the Spine

Troutwine, B. R.; Gontarz, P.; Minowa, R.; Monstad-Rios, A.; Konjikusic, M. J.; Sepich, D. S.; Kwon, R. Y.; Solnica-Krezel, L.; GRAY, R. S.

10.1101/847301 — genetics — Posted on 2019-11-20

1253 Sexual selection does not increase the rate of compensatory adaptation to a mutation influencing a secondary sexual trait in Drosophila melanogaster

Chandler, C. H.; Mammel, A.; Dworkin, I.

10.1101/686741 — evolutionary biology — Posted on 2019-11-20

1254 Radiosafe micro-computed tomography for longitudinal evaluation of murine disease models

Berghen, N.; Dekoster, K.; Marien, E.; Dabin, J.; Hillen, A.; Wouters, J.; Deferme, J.; Vosselman, T.; Tiest, E.; Lox, M.; Vanoirbeek, J.; De Langhe, E.; Bogaerts, R.; Hoylaerts, M.; Lories, R.; Vande Velde, G.

10.1101/847434 — physiology — Posted on 2019-11-20

1255 Design and specificity of long ssDNA donors for CRISPR-based knock-in

Li, H.; Beckman, K. A.; Pessino, V.; Huang, B.; Weissman, J. S.; Leonetti, M. D.

10.1101/178905 — molecular biology — Posted on 2019-11-20

1256 Chromosome-level assembly of Drosophila bifasciata reveals important karyotypic transition of the X chromosome

Bracewell, R.; Tran, A.; Chatla, K.; Bachtrog, D.

10.1101/847558 — genomics — Posted on 2019-11-20

1257 HDAC and MAPK/ERK inhibitors cooperate to reduce viability and stemness phenotype in medulloblastoma

Jaeger, M. d. C.; Ghisleni, E. C.; Cardoso, P. S.; Siniglaglia, M.; Falcon, T.; Brunetto, A. T.; Brunetto, A. L.; de Farias, C. B.; Taylor, M. D.; Nor, C.; Ramaswamy, V.; Roesler, R.

10.1101/521393 — cancer biology — Posted on 2019-11-20

1258 Structural neuroimaging signatures of anorexia nervosa features in a mixed sample enriched for disease vulnerability

Miles, A.; Kaplan, A.; Nikolova, Y.; Voineskos, A.

10.1101/498097 — neuroscience — Posted on 2019-11-20

1259 Dissociable effects of visual crowding on the perception of colour and motion

Greenwood, J. A.; Parsons, M. J.

10.1101/639450 — neuroscience — Posted on 2019-11-20

1260 Emergence of opposite neurons in a decentralized firing-rate model of multisensory integration

Niu, X.; Chau, H. Y.; Lee, T. S.; Zhang, W.-H.

10.1101/845743 — neuroscience — Posted on 2019-11-20

1261 Physiological synchrony promotes cooperative success in real-life interactions

Behrens, F.; Snijdewint, J.; Moulder, R. G.; Prochazkova, E.; Sjak-Shie, E. E.; Boker, S. M.; Kret, M. E.

10.1101/792416 — physiology — Posted on 2019-11-20

1262 Caenorhabditis elegans PIEZO Channel Coordinates Multiple Reproductive Tissues to Govern Ovulation

Bai, X.; Bouffard, J.; Lord, A.; Brugman, K.; Sternberg, P. W.; Cram, E. J.; Golden, A.

10.1101/847392 — developmental biology — Posted on 2019-11-20

1263 Developmental trajectory of pre-hematopoietic stem cell formation fromendothelium

Zhu, Q.; Gao, P.; Tober, J.; Bennett, L.; Chen, C.; Uzun, Y.; Li, Y.; Mumau, M.; Yu, W.; He, B.; Speck, N.; Tan, K.

10.1101/848846 — developmental biology — Posted on 2019-11-20

1264 Unsupervised graph-based learning predicts mutations that alter protein dynamics

Peach, R. L.; Saman, D.; Yaliraki, S. N.; Klug, D. R.; Ying, L.; Willison, K. R.; Barahona, M.

10.1101/847426 — biophysics — Posted on 2019-11-20

1265 Native Hydrogen/Deuterium Exchange Mass Spectrometry of Structured DNA Oligonucleotides

Largy, E.; Gabelica, V.

10.1101/848598 — biophysics — Posted on 2019-11-20

1266 Programmed transport and release of nanoscale cargo by immune cells

Meyer, D.; Telele, S.; Zelena, A.; Neubert, E.; Nissler, R.; Mann, F.; Erpenbeck, L.; Koester, S.; Kruss, S.

10.1101/846956 — biophysics — Posted on 2019-11-20

1267 Exposure during embryonic development to Roundup(R) Power 2.0 affects lateralization, level of activity and growth, but not defensive behaviour of marsh frog tadpoles

Bolis, A.; Gazzola, A.; Pellitteri-Rosa, D.; Colombo, A.; Bonfanti, P.; Bellati, A.

10.1101/847251 — zoology — Posted on 2019-11-20

1268 Barley RIC157 is involved in RACB-mediated susceptibility to powdery mildew

Engelhardt, S.; Kopischke, M.; Hofer, J.; Probst, K.; McCollum, C.; Huckelhoven, R.

10.1101/848226 — plant biology — Posted on 2019-11-20

1269 Antagonistic odor interactions in olfactory sensory neurons are widespread in freely breathing mice

Zak, J. D.; Reddy, G.; Vergassola, M.; Murthy, V. N.

10.1101/847525 — neuroscience — Posted on 2019-11-20

1270 DOWN state in the anterior cingulate and prelimbic areas in rats during immobility.

Bragin, A.; Li, L.; Masmanidis, S. C.; Engel, J.

10.1101/847913 — neuroscience — Posted on 2019-11-20

1271 Cortico-thalamic dysconnectivity links with aberrant striatal dopamine in schizophrenia. A simultaneous 18F-DOPA-PET/resting-state fMRI study

Avram, M.; Brandl, F.; Knolle, F.; Cabello, J.; Leucht, C.; Scherr, M.; Mustafa, M.; Koutsouleris, N.; Leucht, S.; Ziegler, S.; Sorg, C.

10.1101/847178 — neuroscience — Posted on 2019-11-20

1272 Effects of dopamine receptor antagonism and amphetamine sensitization on sign- and goal-tracking after extended training

Khoo, S.; Uhrig, A.; Chaudhri, N.

10.1101/848150 — neuroscience — Posted on 2019-11-20

1273 Unspecific expression in limited excitatory cell populations in interneuron-targeting Cre-driver lines can have large functional effects

Mueller-Komorowska, D.; Opitz, T.; Elzoheiry, S.; Schweizer, M.; Beck, H.

10.1101/848655 — neuroscience — Posted on 2019-11-20

1274 Endogenous responses in brain pH and PO2 in a rodent model of birth asphyxia

Pospelov, A. S.; Puskarjov, M.; Kaila, K.; Voipio, J.

10.1101/848291 — neuroscience — Posted on 2019-11-20

1275 Within Visit Test-Retest Reliability of EEG Profiles in Children with Autism Spectrum Disorder and Typical Development

Levin, A. R.; Naples, A.; Scheffler, A. W.; Webb, S. J.; Shic, F.; Sugar, C. A.; Murias, M.; Bernier, R. A.; Chawarska, K.; Dawson, G.; Faja, S.; Jeste, S.; Nelson, C. A.; McPartland, J. C.; Senturk, D.; Autism Biomarkers Consortium for Clinical Trials,

10.1101/834697 — neuroscience — Posted on 2019-11-20

1276 Nα-terminal acetylation of proteins by NatA and NatB serves distinct physiological roles in Saccharomyces cerevisiae

Friedrich, U. A.; Zedan, M.; Hessling, B.; Fenzl, K.; Gillet, L.; Barry, J.; Knop, M.; Kramer, G.; Bukau, B.

10.1101/843953 — molecular biology — Posted on 2019-11-20

1277 Quantitative high-resolution imaging of live microbial cells at high hydrostatic pressure

Bourges, A. C.; Lazarev, A.; Declerck, N.; Rogers, K. L.; Royer, C. A.

10.1101/847228 — microbiology — Posted on 2019-11-20

1278 Sexual conflict explains diverse patterns of transgenerational plasticity

Burke, N. W.; Bonduriansky, R.; Nakagawa, S.

10.1101/846287 — evolutionary biology — Posted on 2019-11-20

1279 To composite or replicate: how sampling method and protocol differences alter stream bioassessment metrics

Tronstad, L. M.; Wilmot, O. J.; Thornbrugh, D.; Hotaling, S.

10.1101/847327 — ecology — Posted on 2019-11-20

1280 Modulating the cellular context broadly reshapes the mutational landscape of a model enzyme

Thompson, S.; Zhang, Y.; Ingle, C.; Reynolds, K. A.; Kortemme, T.

10.1101/848010 — biophysics — Posted on 2019-11-20

1281 Structural characterization of the N-terminal domain of the Dictyostelium discoideum mitochondrial calcium uniporter

Yuan, Y.; Cao, C.; Wen, M.; Li, M.; Dong, Y.; Wu, L.; Wu, J.; Cui, T.; Li, D.; Chou, J. J.; OuYang, B.

10.1101/848002 — biophysics — Posted on 2019-11-20

1282 Insect egg-killing: a new front on the evolutionary arms-race between Brassicaceae plants and Pierid butterflies

Griese, E.; Caarls, L.; Mohammadin, S.; Bassetti, N.; Bukovinszkine Kiss, G.; Breman, F. C.; Poelman, E. H.; Gols, R.; Schranz, M. E.; Fatouros, N. E.

10.1101/848267 — evolutionary biology — Posted on 2019-11-20

1283 Comparative genomics reveals signature regions used to develop a robust and sensitive multiplex TaqMan real-time qPCR assay to detect the genus Dickeya and Dickeya dianthicola

Dobhal, S.; Boluk, G.; Babler, B.; Stulberg, M. J.; Rascoe, J.; Nakhla, M.; Chapman, T. A.; Crockford, A. B.; Melzer, M.; Alvarez, A. M.; Arif, M.

10.1101/847590 — plant biology — Posted on 2019-11-20

1284 Extending the genotype in Brachypodium by including DNA methylation reveals a joint contribution with genetics on adaptive traits

Eichten, S. R.; Srivastava, A.; Reddiex, A. J.; Ganguly, D. R.; Heussler, A.; Streich, J.; Wilson, P. B.; Borevitz, J. O.

10.1101/840744 — plant biology — Posted on 2019-11-20

1285 RNA recognition by the E2 subunit of the chloroplast pyruvate dehydrogenase from Chlamydomonas

Neusius, D.; Kleinknecht, L.; Bohne, A.-V.; Nickelsen, J.

10.1101/831339 — plant biology — Posted on 2019-11-20

1286 Impact of different amino acid substitutions in penicillin-binding protein 3 on beta-lactam susceptibility in Haemophilus influenzae

Reist, J.; Linnik, J.; Schibli, U.; Egli, A.; Hinic, V.

10.1101/846428 — microbiology — Posted on 2019-11-20

1287 A Multiple-trait Bayesian Variable Selection Regression Method for Integrating Phenotypic Causal Networks in Genome-Wide Association Studies

Wang, Z.; Chapman, D.; Morota, G.; Cheng, H.

10.1101/847285 — genomics — Posted on 2019-11-20

1288 RH mapping by sequencing: chromosome-scale assembly of the duck genome

Rao, M.; Vignal, A.; Morisson, M.; Fillon, V.; Leroux, S.; Lhuillier, E.; Esquerre, D.; Bouchez, O.; Li, N.; Faraut, T.

10.1101/846840 — genomics — Posted on 2019-11-20

1289 Four QTL underlie resistance to a microsporidian parasite that may drive genome evolution in its Daphnia host

Keller, D.; Kirk, D.; Luijckx, P.

10.1101/847194 — genetics — Posted on 2019-11-20

1290 Estimating genetic inheritance in case-control studies

Li, Z.; Li, N.; Li, X.; Li, Q.

10.1101/847269 — genetics — Posted on 2019-11-20

1291 Testing Darwin's naturalization conundrum based on taxonomic, phylogenetic and functional dimensions of vascular plants

Pinto-Ledezma, J. N.; Villalobos, F.; Reich, P. R.; Larkin, D. J.; Cavender-Bares, J.

10.1101/847442 — ecology — Posted on 2019-11-20

1292 Co-designed land-use scenarios and their implications for storm runoff and streamflow in New England

Guswa, A. J.; Hall, B.; Cheng, C.; Thompson, J.

10.1101/847186 — ecology — Posted on 2019-11-20

1293 The engulfment receptor Draper organizes the postsynaptic spectrin cytoskeleton into corrals containing synaptic proteins and promotes synaptic renewal

Wang, S.; Kim, H.-y.; Yoo, N.; Raski, M.; Shih, C.; Tran, K.; Parkhouse, W.; Krieger, C.; Harden, N.

10.1101/846121 — developmental biology — Posted on 2019-11-20

1294 Non-affine displacements encode collective conformational fluctuations in proteins

Prakashchand, D. D.; Ahalawat, N.; Bandyopadhyay, S.; Sengupta, S.; Mondal, J.

10.1101/840850 — biophysics — Posted on 2019-11-20

1295 DNA origami nanostructures as a tool for the targeted destruction of bacteria

Mela, I.; Vallejo-Ramirez, P. P.; Makarchuk, S.; Christie, G.; Bailey, D. M. D.; Henderson, R. M.; Sugiyama, H.; Endo, M.; Kaminski, C. F.

10.1101/837252 — bioengineering — Posted on 2019-11-20

1296 Integration of Odor-Induced Activity of Kenyon Cells in an Electrotonically Compact Drosophila Mushroom Body Output Neuron (MBON)

Hafez, O.; Escribano, B.; Pielage, J.; Niebur, E.

10.1101/847244 — neuroscience — Posted on 2019-11-20

1297 The neuroanatomical ultrastructure and function of a biological ring attractor

Turner-Evans, D. B.; Jensen, K.; Ali, S.; Paterson, T.; Sheridan, A.; Ray, R. P.; Lauritzen, S.; Bock, D.; Jayaraman, V.

10.1101/847152 — neuroscience — Posted on 2019-11-20

1298 The taxonomic and functional biogeographies of phytoplankton and zooplankton communities across boreal lakes

St-Gelais, N. F.; Vogt, R. J.; del Giorgio, P. A.; Beisner, B. E.

10.1101/373332 — ecology — Posted on 2019-11-20

1299 Motility and Phototaxis of Gonium, the Simplest Differentiated Colonial Alga

de Maleprade, H.; Moisy, F.; Ishikawa, T.; Goldstein, R. E.

10.1101/845891 — biophysics — Posted on 2019-11-20

1300 Phenotypic and physiological responses to salt exposure in Sorghum reveal diversity among domesticated landraces

Henderson, A. N.; Crim, P. M.; Cumming, J. R.; Hawkins, J. S.

10.1101/848028 — plant biology — Posted on 2019-11-20

1301 Easy MPE: Extraction of quality microplot images for UAV-based high-throughput field phenotyping

Tresch, L.; Mu, Y.; Itoh, A.; Kaga, A.; Taguchi, K.; Hirafuji, M.; Ninomiya, S.; Guo, W.

10.1101/745752 — bioengineering — Posted on 2019-11-20

1302 Phase separation by ssDNA binding protein controlled via protein-protein and protein-DNA interactions

Harami, G. M.; Kovacs, Z. J.; Pancsa, R.; Palinkas, J.; Barath, V.; Tarnok, K.; Malnasi-Csizmadia, A.; Kovacs, M.

10.1101/797431 — biochemistry — Posted on 2019-11-20

1303 Genetic tool development in marine protists: Emerging model organisms for experimental cell biology

Drahomira, F.; Nisbet, R. E. R.; Lukes, J.

10.1101/718239 — ecology — Posted on 2019-11-20

1304 Individual-subject functional localization increases univariate activation but not multivariate pattern discriminability in the 'multiple-demand' frontoparietal network

Shashidhara, S.; Spronkers, F. S.; Erez, Y.

10.1101/661934 — neuroscience — Posted on 2019-11-20

1305 CRISPR-Cas12a/Cpf1-assisted precise, efficient and multiplexed genome-editing in Yarrowia lipolytica

Yang, Z.; Edwards, H.; Xu, P.

10.1101/847905 — synthetic biology — Posted on 2019-11-20

1306 Symbiosis genes show a unique pattern of introgression and selection within a Rhizobium leguminosarum species complex

Cavassim, M. I. A.; Moeskjaer, S.; Moslemi, C.; Fields, B.; Bachmann, A.; Vilhjalmsson, B.; Schierup, M. H.; Young, J. P. W.; Andersen, S. U.

10.1101/526707 — genomics — Posted on 2019-11-20

1307 Redox signaling modulates Rho activity and tissue contractility in the C. elegans spermatheca

Kelley, C. A.; De Henau, S.; Bell, L.; Dansen, T. B.; Cram, E. J.

10.1101/849463 — cell biology — Posted on 2019-11-20

1308 Breast tumor stiffness instructs bone metastasis via mechanical memory

Watson, A. W.; Grant, A.; Parker, S. S.; Harman, M. W.; Roman, M. R.; Forte, B. L.; Gowan, C. C.; Castro-Portuguez, R.; Franck, C.; Cusanovich, D.; Padi, M.; Romanoski, C.; Mouneimne, G.

10.1101/847699 — cancer biology — Posted on 2019-11-20

1309 TRA2A-induced upregulation of LINC00662 regulates blood-brain barrier permeability by affecting ELK4 mRNA stability in Alzheimer's microenvironment

Liu, Q.; Zhu, L.; Liu, X.; Zheng, J.; Liu, Y.; Ruan, X.; Cao, S.; Cai, H.; Li, Z.; Xue, Y.

10.1101/848408 — molecular biology — Posted on 2019-11-20

1310 Human ESCRT-III Polymers Assemble on Positively Curved Membranes and Induce Helical Membrane Tube Formation

Bertin, A.; de Franceschi, N.; de la Mora, E.; maity, S.; Miguet, N.; di Cicco, A.; Roos, W. H.; Mangenot, S.; Weissenhorn, W.; Bassereau, P.

10.1101/847319 — cell biology — Posted on 2019-11-20

1311 MEIS1 down-regulation by MYC mediates prostate cancer development through elevated HOXB13 expression and AR activity

Whitlock, N. C.; Trostel, S. Y.; Wilkinson, S.; Terrigino, N. T.; Hennigan, S. T.; Lake, R.; Carrabba, N. V.; Atway, R.; Walton, E. D.; Gryder, B. E.; Capaldo, B. J.; Ye, H.; Sowalsky, A. G.

10.1101/848952 — cancer biology — Posted on 2019-11-20

1312 BET inhibition disrupts transcription but retains enhancer-promoter contact

Crump, N. T.; Ballabio, E.; Godfrey, L.; Thorne, R.; Repapi, E.; Kerry, J.; Tapia, M.; Hua, P.; Filippakopoulos, P.; Davies, J. O. J.; Milne, T.

10.1101/848325 — molecular biology — Posted on 2019-11-20

1313 RNA-guided Retargeting of Sleeping Beauty Transposition in Human Cells

Kovac, A.; Miskey, C.; Menzel, M.; Grueso, E.; Gogol-Döring, A.; Ivics, Z.

10.1101/848309 — molecular biology — Posted on 2019-11-20

1314 Translational regulation of Pmt1 and Pmt2 by Bfr1 affects unfolded protein O-mannosylation

Castells-Ballester, J.; Rinis, N.; Kotan, I.; Gal, L.; Bausewein, D.; Kats, I.; Zatorska, E.; Kramer, G.; Bukau, B.; Schuldiner, M.; Strahl, S.

10.1101/847095 — molecular biology — Posted on 2019-11-20

1315 Microtubule growth rates are sensitive to global and local changes in microtubule plus-end density

Geisterfer, Z. M.; Zhu, D. Y.; Mitchison, T.; Oakey, J.; Gatlin, J. C.

10.1101/849190 — molecular biology — Posted on 2019-11-20

1316 TurboID-mediated proximity labelling of cytoophidium proteome in Drosophila

Zhang, B.; Zhang, Y.; Liu, J.-L.

10.1101/848283 — cell biology — Posted on 2019-11-20

1317 Ubiquitin transfer by a RING E3 ligase occurs from a closed E2~Ub conformation

Branigan, E.; Penedo, J. C.; Hay, R. T.

10.1101/848788 — biochemistry — Posted on 2019-11-20

1318 The Role of the Ovarian Cancer G -Coupled Receptor (OGR1) in Idiopathic Pulmonary Fibrosis

Nagel, D. J.; Clough, R.; Bell, T. J.; Ku, W.-Y.; Sime, P.; Kottmann, M.

10.1101/849117 — cell biology — Posted on 2019-11-20

1319 Discovery of an AKT Degrader with Prolonged Inhibition ofDownstream Signaling

You, I.; Erickson, E.; Donovan, K.; Eleuteri, N.; Fischer, E. S.; Gray, N. S.; Toker, A.

10.1101/848887 — cancer biology — Posted on 2019-11-20

1320 RAF autoinhibition and 14-3-3 proteins promote paradoxical activation

Mendiratta, G.; McFall, T.; Stites, E. C.

10.1101/849489 — cancer biology — Posted on 2019-11-20

1321 An in vivo KRAS allelic series reveals distinct phenotypes of common oncogenic variants

Zafra, M. P.; Alonso-Curbelo, D.; Goswami, S.; Schatoff, E. M.; Han, T.; Wilkinson, J. E.; Dow, L. E.

10.1101/847509 — cancer biology — Posted on 2019-11-20

1322 A machine learning strategy that leverages large datasets to boost statistical power in small-scale experiments

Fondrie, W. E.; Noble, W. S.

10.1101/849331 — bioinformatics — Posted on 2019-11-20

1323 Profilin 1 Controls the Assembly, Organization, and Dynamics of Leading Edge Actin Structures Through Internetwork Competition and Collaboration

Skruber, K.; Warp, P. V.; Shklyarov, R.; Thomas, J. D.; Swanson, M. S.; Henty-Ridilla, J. L.; Read, T.-A.; Vitriol, E. A.

10.1101/849356 — cell biology — Posted on 2019-11-20

1324 Molecular and cellular dissection of the OSBP cycle through a fluorescent inhibitor

Péresse, T.; Kovacs, D.; Subra, M.; Bigay, J.; Tsai, M.-C.; Polidori, J.; Gautier, R.; Desrat, S.; Fleuriot, L.; Debayle, D.; Litaudon, M.; Pham, V. C.; Bignon, J.; Antonny, B.; Roussi, F.; Mesmin, B.

10.1101/844548 — cell biology — Posted on 2019-11-20

1325 The Somatic Golgi nucleates microtubules that are directed by Kinesin-2 to maintain microtubule polarity within neurons

Mukherjee, A.; Brooks, P.; Bernard, F.; Guichet, A.; Conduit, P. T.

10.1101/846832 — cell biology — Posted on 2019-11-20

1326 Reprogrammed mRNA translation drives metabolic response to therapeutic targeting of ribosome biogenesis

Kusnadi, E. P.; Trigos, A. S.; Cullinane, C.; Goode, D. L.; Larsson, O. S.; Devlin, J. R.; Chan, K. T.; DeSouza, D. P.; McConville, M. J.; McArthur, G. A.; Thomas, G.; Sanij, E.; Poortinga, G.; Hannan, R. D.; Hannan, K. M.; Kang, J.; Pearson, R. B.

10.1101/847723 — cancer biology — Posted on 2019-11-20

1327 Generation of novel diagnostic and therapeutic exosomes to detect and deplete pro-tumorigenic M2-macrophages.

Rashid, M. H.; Borin, T. F.; Ara, R.; Alptekin, A.; Liu, Y.; Arbab, A. S.

10.1101/849448 — cancer biology — Posted on 2019-11-20

1328 Targeting RNA Polymerase I transcription synergises with TOP1 inhibition in potentiating the DNA damage response in high-grade serous ovarian cancer

Yan, S.; Madhamshettiwar, P. B.; Simpson, K. J.; Ellis, S.; Kang, J.; Cullinane, C.; Sheppard, K. E.; Hannan, K. M.; Hannan, R. D.; Sanij, E.; Pearson, R. B.; Chan, K. T.

10.1101/849307 — cancer biology — Posted on 2019-11-20

1329 Atypical processing of uncertainty in individuals at risk for psychosis

Cole, D. M.; Diaconescu, A. O.; Pfeiffer, U. J.; Brodersen, K. H.; Mathys, C. D.; Julkowski, D.; Ruhrmann, S.; Schilbach, L.; Tittgemeyer, M.; Vogeley, K.; Stephan, K. E.

10.1101/796300 — neuroscience — Posted on 2019-11-20

1330 Gliotoxin, identified from a screen of fungal metabolites, disrupts 7SK snRNP, releases P-TEFb and reverses HIV-1 latency

Stoszko, M.; Al-Hatmi, A. M.; Skriba, A.; Roling, M.; Ne, E.; Mueller, Y. M.; Najafzadeh, M. J.; Crespo, R.; Kang, J.; Ptackova, R.; Biswas, P.; Bertoldi, A.; Kan, T. W.; de Crignis, E.; Sulc, M.; Lebbink, J.; Rokx, C.; Verbon, A.; van Ijcken, W.; Palstra, R.-J.; Katsikis, P. D.; Havlicek, V.; de Hoog, S.; Mahmoudi, T.

10.1101/848929 — molecular biology — Posted on 2019-11-20

1331 Is hatchery stocking useful? lessons from Japan

Kitada, S.

10.1101/828798 — ecology — Posted on 2019-11-20

1332 Wnt Regulation: Exploring Axin-Disheveled interactions and defining mechanisms by which the SCF E3 ubiquitin ligase is recruited to the destruction complex

Schaefer, K.; Pronobis, M.; Williams, C.; Zhang, S.; Bauer, L.; Goldfarb, D.; Yan, F.; Major, M.; Peifer, M.

10.1101/847384 — cell biology — Posted on 2019-11-20

1333 Engrafted Human Induced Pluripotent Stem Cell-Derived Cardiomyocytes Undergo Clonal Expansion In Vivo

El-Nachef, D.; Bugg, D.; Beussman, K. M.; Martinson, A. M.; Murry, C. E.; Sniadecki, N. J.; Davis, J.

10.1101/847665 — cell biology — Posted on 2019-11-20

1334 Intramembrane protease RHBDL4 interacts with erlin complex to target unstable soluble proteins for degradation

Kuehnle, N.; Bock, J.; Knopf, J. D.; Landscheidt, N.; Lee, J.-G.; Ye, Y.; Lemberg, M. K.

10.1101/848754 — cell biology — Posted on 2019-11-20

1335 Spatial organization of cortical actin alignments for the ooplasmic segregation of ascidian Ciona eggs

Tani, T.; Ishii, H.

10.1101/849323 — cell biology — Posted on 2019-11-20

1336 Kinome-centric pharmacoproteomics identifies signaling pathways underlying cellular responses to targeted cancer drugs

Golkowski, M.; Lau, H.-T.; Chan, M.; Kenerson, H.; Vidadala, V. N.; Shoemaker, A.; Maly, D. J.; Yeung, R. S.; Gujral, T. S.; Ong, S.-E.

10.1101/849281 — cancer biology — Posted on 2019-11-20

1337 Evaluating the efficacy of multiple myeloma cell lines as models for patient tumors via transcriptomic correlation analysis

Sarin, V.; Yu, K.; Ferguson, I. D.; Gugliemini, O.; Nix, M. A.; Hann, B. C.; Sirota, M.; Wiita, A. P.

10.1101/847368 — cancer biology — Posted on 2019-11-20

1338 Targeting the resolvin E1 - eicosapentaenoic acid axis improves hyperinsulinemia and hyperglycemia in a host genetic dependent manner

Pal, A.; Al-Shaer, A. E.; Guesdon, W.; Torres, M. J.; Armstrong, M.; Quinn, K.; Davis, T.; Reisdorph, N.; Neufer, P. D.; Spangenburg, E. E.; Carroll, I.; Bazinet, R. P.; Clària, J.; Shaikh, S. R.

10.1101/848093 — biochemistry — Posted on 2019-11-20

1339 Structured hierarchical models for probabilistic inference from perturbation screening data

Dirmeier, S.; Beerenwinkel, N.

10.1101/848234 — bioinformatics — Posted on 2019-11-20

1340 qKW9 encodes a pentatricopeptide repeat protein affecting photosynthesis and grain filling in maize

Yan, J.; Huang, J.; Lu, G.; Liu, L.; Raihan, M. S.; Xu, J.; Jian, L.; Zhao, L.; Tran, T. M.; Zhang, Q.; Liu, J.; Li, W.; Wei, C.; Braun, D. M.; Li, Q.; Fernie, A. R.; Jackson, D.

10.1101/847145 — plant biology — Posted on 2019-11-20

1341 Beta-caryophyllene enhances wound healing through multiple routes.

Koyama, S.; Purk, A.; Kaur, M.; Soini, H. A.; Novotny, M. V.; Davis, K.; Kao, C. C.; Matsunami, H.; Mescher, A.

10.1101/611046 — physiology — Posted on 2019-11-20

1342 The Meta-Position of Phe4 in Leu-enkephalin Regulates Potency, Selectivity, Functional Activity, and Signaling Bias at the Delta and Mu Opioid Receptors

Cassell, R. J.; Sharma, K. K.; Su, H.; Cummins, B. R.; Cui, H.; Mores, K. L.; Blaine, A. T.; Altman, R. A.; van Rijn, R. M.

10.1101/750794 — pharmacology and toxicology — Posted on 2019-11-20

1343 Reduced Influence of Perceptual Context in Schizophrenia: Behavioral and Neurophysiological Evidence

Pokorny, V.; Lano, T. J.; Schallmo, M.-P.; Olman, C. A.; Sponheim, S. R.

10.1101/795534 — neuroscience — Posted on 2019-11-20

1344 Decoding and encoding models reveal the role of the depth of processing in the brain representation of meaning

Soto, D.; Sheikh, U. A.; Mei, N.; Santana, R.

10.1101/830448 — neuroscience — Posted on 2019-11-20

1345 Neuronal discharge during a simple reaching task in macaques is counter to theories of basal ganglia-thalamic communication

Schwab, B. C.; Kase, D.; Zimnik, A.; Rosenbaum, R.; Codianni, M. G.; Rubin, J. E.; Turner, R. S.

10.1101/546598 — neuroscience — Posted on 2019-11-20

1346 Herpes Simplex Virus Infection, Acyclovir and IVIG Treatment All Independently Cause Gut Dysbiosis.

Cantin, E. M.; Ramakrishna, C.; Mendonca, S.; Reugger, P.; Kim, J. H.; Borneman, J.

10.1101/844712 — microbiology — Posted on 2019-11-20

1347 Strand asymmetry influences mismatch repair during single-strand annealing

Pokusaeva, V. O.; Rosado Diez, A.; Espinar, L.; Filion, G. J.

10.1101/847160 — genomics — Posted on 2019-11-20

1348 A cell fate switch in the C. elegans seam cell lineage occurs through modulation of the Wnt asymmetry pathway in response to temperature increase

Barkoulas, M.; Hintze, M.; Koneru, S. L.; Gilbert, S. P. R.; Katsanos, D.

10.1101/849174 — developmental biology — Posted on 2019-11-20

1349 TUTase mediated site-directed access to clickable chromatin employing CRISPR-dCas9

George, J. T.; Azhar, M.; Aich, M.; Sinha, D.; Ambi, U. B.; Maiti, S.; Chakraborty, D.; Srivatsan, S. G.

10.1101/846980 — biochemistry — Posted on 2019-11-20

1350 Characterization of OTUB1 activation and inhibition by different E2 enzymes

Que, L. T.; Morrow, M. E.; Wolberger, C.

10.1101/847806 — biochemistry — Posted on 2019-11-20

1351 A Bayesian framework for unifying data cleaning, source separation and imaging of electroencephalographic signals

Ojeda, A.; Klug, M.; Kreutz-Delgado, K.; Gramann, K.; Mishra, J.

10.1101/559450 — neuroscience — Posted on 2019-11-20

1352 Flexible linkers in CaMKII control the balance between activating and inhibitory autophosphorylation

Bhattacharyya, M.; Lee, Y. K.; Muratcioglu, S.; Qiu, B.; Nyayapati, P.; Schulman, H.; Groves, J. T.; Kuriyan, J.

10.1101/848044 — biophysics — Posted on 2019-11-20

1353 Fluorescence correlation spectroscopy and photon count histograms in small domains. Part I: General theory

Elson, E. L.; Jiang, Y.; Xu, B.; Melnykov, A.; Genin, G. M.

10.1101/847129 — biophysics — Posted on 2019-11-20

1354 Computational and robotic modeling reveal parsimonious combinations of interactions between individuals in schooling fish

Lei, L.; Escobedo, R.; Sire, C.; Theraulaz, G.

10.1101/677005 — animal behavior and cognition — Posted on 2019-11-20

1355 Novel methodology for assessing total recovery time in response to unexpected perturbations while walking

Rosenblum, U.; Kribus-Shmiel, L.; Zeilig, G.; Bahat, Y.; Kimel-Naor, S.; Melzer, I.; Plotnik, M.

10.1101/846923 — neuroscience — Posted on 2019-11-20

1356 THE SPATIAL REGULATION OF CONDENSIN ACTIVITY IN CHROMOSOME CONDENSATION

Lamothe, R.; Costantino, L.; Koshland, D.

10.1101/849273 — genetics — Posted on 2019-11-20

1357 Proximate causes of infertility and embryo mortality in captive zebra finches

Pei, Y.; Forstmeier, W.; Wang, D.; Martin, K.; Rutkowska, J.; Kempenaers, B.

10.1101/847103 — evolutionary biology — Posted on 2019-11-20

1358 Regionalized tissue fluidization by an actomyosin cable is required for epithelial gap closure during insect gastrulation

Jain, A.; Ulman, V.; Mukherjee, A.; Prakash, M.; Pimpale, L.; Münster, S.; Haase, R.; Panfilio, K. A.; Jug, F.; Grill, S. W.; Tomancak, P.; Pavlopoulos, A.

10.1101/744193 — developmental biology — Posted on 2019-11-20

1359 GeDex: A consensus Gene-disease Event Extraction System based on frequency patterns and supervised learning

Soto, L. M.; Olayo-Alarcon, R.; Velazquez-Ramirez, D. A.; Munguia-Reyes, A.; Balderas-Martinez, Y. I.; Mendez-Cruz, C.-F.; Collado-Vides, J.

10.1101/839704 — bioinformatics — Posted on 2019-11-20

1360 Inferring phylogenetic trees from mutational distance of transposable elements.

Bermudez, J.

10.1101/846949 — evolutionary biology — Posted on 2019-11-20

1361 Measurements of the timescale and conformational space of AMPA receptor desensitization

Salazar, H.; Mischke, S.; Plested, A.

10.1101/847202 — biophysics — Posted on 2019-11-20

1362 Unoccupied aerial system enabled functional modeling of maize (Zea mays L.) height reveals dynamic expression of loci associated to temporal growth.

Anderson, S. L.; Murray, S. C.; Chen, Y.; Malambo, L.; Chang, A.; Popescu, S.; Cope, D.; Jung, J.

10.1101/848531 — plant biology — Posted on 2019-11-19

1363 A trafficome-wide RNAi screen reveals deployment of early and late secretory host proteins and the entire late endo-/lysosomal vesicle fusion machinery by intracellular Salmonella

Kehl, A.; Göser, V.; Reuter, T.; Liss, V.; Franke, M.; John, C.; Richter, C. P.; Deiwick, J.; Hensel, M.

10.1101/848549 — microbiology — Posted on 2019-11-19

1364 Preference and switching in the Kill-the-Winner functional response: Diversity, size structure, and synergistic grazing in plankton models

Archibald, K.; Sosik, H. M.; Neubert, M. G.

10.1101/848564 — ecology — Posted on 2019-11-19

1365 Effect of antenatal tetramethylpyrazine on lung development and YAP expression in a rat model of experimental congenital diaphragmatic hernia

Liao, J.; Liu, W.; Zhang, L.; Li, Q.; Hou, F.

10.1101/848556 — developmental biology — Posted on 2019-11-19

1366 Phytohormonal cross-talk modulate Bipolaris sorokiniana (Scc.)interaction with Zea mays

Yousaf, M. J.; Hussain, A.; Hamayun, M.; Iqbal, A.; Irshad, M.; Ahmad, A.; Lee, I.-J.

10.1101/847061 — physiology — Posted on 2019-11-19

1367 Nick-seq for single-nucleotide resolution genomic maps of DNA modifications and damage

Cao, B.; Wu, X.; Zhou, J.; Wu, H.; DeMott, M. S.; Gu, C.; Wang, L.; You, D.; Dedon, P. C.

10.1101/845768 — molecular biology — Posted on 2019-11-19

1368 Verifying molecular clusters by 2-color localization microscopy and significance testing

Arnold, A. M.; Schneider, M. C.; Huesson, C.; Sablatnig, R.; Brameshuber, M.; Baumgart, F.; Schuetz, G. J.

10.1101/847012 — biophysics — Posted on 2019-11-19

1369 Tuning cell motility via cell tension with a mechanochemical cell migration model

Tao, K.; Wang, J.; Kuang, X.; Wang, W.; Liu, F.; Zhang, L.

10.1101/847046 — biophysics — Posted on 2019-11-19

1370 The contribution of PIP2-type aquaporins to photosynthesis in response to increased vapour pressure deficit

Israel, D.; Khan, S.; Warren, C. R.; Zwiazek, J. J.; Robson, T. M.

10.1101/847053 — plant biology — Posted on 2019-11-19

1371 Environmental specificity in Drosophila-bacteria symbiosis affects host developmental plasticity

Guilhot, R.; Rombaut, A.; Xuereb, A.; Howell, K.; Fellous, S.

10.1101/717702 — evolutionary biology — Posted on 2019-11-19

1372 Variation at the Klotho gene locus does not affect cognitive function in up to 335,074 British Caucasians in the UK Biobank.

Amin, H. A.; Drenos, F.; Blakemore, A. I.

10.1101/838409 — genetics — Posted on 2019-11-19

1373 Temporally-precise disruption of prefrontal cortex informed by the timing of beta bursts impairs human action-stopping

Hannah, R.; Muralidharan, V.; Sundby, K. K.; Aron, A. R.

10.1101/843557 — neuroscience — Posted on 2019-11-19

1374 Microtubule-dependent protein trafficking promotes apical constriction during tissue invagination

Chung, S.; Le, T. P.

10.1101/827378 — developmental biology — Posted on 2019-11-19

1375 Resistance to targeted therapies as a multifactorial, gradual adaptation to inhibitor specific selective pressures

Vander Velde, R.; Yoon, N.; Marusyk, V.; Durmaz, A.; Dhawan, A.; Myroshnychenko, D.; Peral, D.; Desai, B.; Balynska, O.; Poleszhuk, J.; Liu, K.; Abazeed, M.; Tan, A. C.; Mian, O.; Haura, E.; Scott, J.; Marusyk, A.

10.1101/504837 — cancer biology — Posted on 2019-11-19

1376 Detection of interictal epileptiform discharges: A comparison of on-scalp MEG and conventional MEG measurements

Westin, K.; Pfeiffer, C.; Andersen, L. M.; Ruffieux, S.; Cooray, G.; Kalaboukhov, A.; Winkler, D.; Ingvar, M.; Schneiderman, J.; Lundqvist, D.

10.1101/834275 — neuroscience — Posted on 2019-11-19

1377 Genetic interaction between two unlinked loci underlies the loss of self-incompatibility in Arabidopsis lyrata

Li, Y.; van Kleunen, M.; Stift, M.

10.1101/830414 — genetics — Posted on 2019-11-19

1378 A hierarchical framework for segmenting movement paths

Getz, W. M.

10.1101/819763 — ecology — Posted on 2019-11-19

1379 Atypical processing of uncertainty in individuals at risk for psychosis

Cole, D. M.; Diaconescu, A. O.; Pfeiffer, U. J.; Brodersen, K. H.; Mathys, C. D.; Julkowski, D.; Ruhrmann, S.; Schilbach, L.; Tittgemeyer, M.; Vogeley, K.; Stephan, K. E.

10.1101/796300 — neuroscience — Posted on 2019-11-19

1380 Reduction of auditory input improves performance on the heartbeat tracking task, but does not necessarily enhance interoception

Todd, J.; Hina, F.; Aspell, J. E.

10.1101/830141 — neuroscience — Posted on 2019-11-19

1381 Inoculation with the mycorrhizal fungus Rhizophagus irregularis modulates the relationship between root growth and nutrient content in maize (Zea mays L.)

Ramirez Flores, M. R.; Bello-Bello, E.; Rellan Alvarez, R.; Sawers, R. J. H.; Olalde-Portugal, V.

10.1101/695411 — plant biology — Posted on 2019-11-19

1382 Estimating the Relative Probability of Direct Transmission between Infectious Disease Patients

Leavitt, S. V. N.; Lee, R. S.; Sebastiani, P.; Horsburgh, C. R.; Jenkins, H. E.; White, L. F.

10.1101/612945 — epidemiology — Posted on 2019-11-19

1383 Horizontal "gene drives" harness indigenous bacteria for bioremediation

French, K. E.; Zhou, Z.; Terry, N.

10.1101/735886 — synthetic biology — Posted on 2019-11-19

1384 Alzheimer's genetic risk factor FERMT2 (Kindlin-2) controls axonal growth and synaptic plasticity in an APP-dependent manner.

Eysert, F.; Coulon, A.; Boscher, E.; Vreulx, A.-C.; Flaig, A.; Mendes, T.; Hughes, S.; Grenier-Boley, B.; Hanoulle, X.; Demiautte, F.; Bauer, C.; Marttinen, M.; Takalo, M.; Amouyel, P.; Desai, S.; Pike, I.; Hiltunen, M.; Checler, F.; Farinelli, M.; Delay, C.; Malmanche, N.; Hebert, S.; Dumont, J.; Kilinc, D.; Lambert, J.-C.; Chapuis, J.

10.1101/767194 — neuroscience — Posted on 2019-11-19

1385 Somatic hypermutation analysis for improved identification of B cell clonal families from next-generation sequencing data

Nouri, N.; Kleinstein, S.

10.1101/788620 — immunology — Posted on 2019-11-19

1386 Gene-by-environmental modulation of longevity and weight gain in the murine BXD family

Roy, S.; Sleiman, M. B.; Jha, P.; Williams, E. G.; Ingels, J. F.; Chapman, C. J.; McCarty, M. S.; Hook, M.; Sun, A.; Neuner, S.; Huang, J.; Zhao, W.; Centeno, A. G.; Kaczorowski, C. C.; Mozhui, K.; Mulligan, M. K.; Lu, L.; Read, R. W.; Sen, S.; Miller, R.; Auwerx, J.; Williams, R. W.

10.1101/776559 — genetics — Posted on 2019-11-19

1387 SNP-CRISPR: a web tool for SNP-specific genome editing

Chen, C.-L.; Rodiger, J.; Chung, V.; Viswanatha, R.; Mohr, S. E.; Hu, Y.; Perrimon, N.

10.1101/847277 — bioinformatics — Posted on 2019-11-19

1388 Iterative Hard Thresholding in GWAS: Generalized Linear Models, Prior Weights, and Double Sparsity

Chu, B. B.; Keys, K. L.; German, C. A.; Zhou, H.; Zhou, J. J.; Sinsheimer, J. S.; Lange, K.

10.1101/697755 — genomics — Posted on 2019-11-19

1389 Chemical variations in Quercus pollen as a tool for taxonomic identification: implications for long-term ecological and biogeographic research

Florian, M.; Zimmermann, B.; Birks, H. J. B.; Vila-Vicosa, C.; Seddon, A. W. R.

10.1101/761148 — ecology — Posted on 2019-11-19

1390 Semi-supervised identification of cell populations in single-cell ATAC-seq

Przytycki, P. F.; Pollard, K. S.

10.1101/847657 — bioinformatics — Posted on 2019-11-19

1391 Comprehensive analysis of structural variants in breast cancer genomes using single molecule sequencing

Aganezov, S.; Goodwin, S.; Sherman, R.; Sedlazeck, F. J.; Arun, G.; Bhatia, S.; Lee, I.; Kirsche, M.; Wappel, R.; Kramer, M.; Kostroff, K.; Spector, D. L.; Timp, W.; McCombie, W. R.; Schatz, M. C.

10.1101/847855 — bioinformatics — Posted on 2019-11-19

1392 Structured hierarchical models for probabilistic inference from perturbation screening data

Dirmeier, S.; Beerenwinkel, N.

10.1101/848234 — bioinformatics — Posted on 2019-11-19

1393 Deep sequencing of pre-translational mRNPs reveals hidden flux through evolutionarily conserved AS-NMD pathways

Kovalak, C. A.; Moore, M. J.; Metkar, M.

10.1101/847004 — bioinformatics — Posted on 2019-11-19

1394 Classification and Analysis of Minimally-Processed Data from a Large Magnetoencephalography Dataset using Convolutional Neural Networks

Garry, J. A.; Trappenberg, T.; Beyea, S.; Bardouille, T.

10.1101/846964 — neuroscience — Posted on 2019-11-19

1395 Enhanced Cerebral Blood Volume under Normobaric Hyperoxia in the J20-hAPP Mouse Model of Alzheimer's Disease

Shabir, O.; Sharp, P.; Rebollar, M. A.; Boorman, L.; Howarth, C.; Wharton, S. B.; Francis, S. E.; Berwick, J.

10.1101/848713 — neuroscience — Posted on 2019-11-19

1396 Disentangling neuronal inhibition and inhibitory pathways in the lateral habenula

Webster, J. F.; Vroman, R.; Balueva, K.; Wulff, P.; Sakata, S.; Wozny, C.

10.1101/633271 — neuroscience — Posted on 2019-11-19

1397 GSK-3β regulates the synaptic expression of NMDA receptors via phosphorylation of phosphatidylinositol 4 kinase type IIα

Amici, M.; Lee, Y.; Pope, R. J.; Collingridge, G. L.

10.1101/841676 — neuroscience — Posted on 2019-11-19

1398 Neural systems for memory-based value judgment and decision-making

Vaidya, A. R.; Badre, D.

10.1101/712661 — neuroscience — Posted on 2019-11-19

1399 Developmentally-orchestrated mitochondrial processes prime the selective inheritance against harmful mitochondrial DNA mutations

Chen, Z.; Wang, Z.-H.; Zhang, G.; Bleck, C. K. E.; Chung, D. J.; Madison, G.; Lindberg, E.; Combs, C.; Balaban, R. S.; Xu, H.

10.1101/646638 — genetics — Posted on 2019-11-19

1400 Genetic analysis of the transition from wild to domesticated cotton (G. hirsutum)

Grover, C. E.; Yoo, M.-J.; Gore, M. A.; Harker, D. B.; Byers, R. L.; Lipka, A. E.; Hu, G.; Yuan, D.; Conover, J.; Udall, J. A.; Paterson, A. H.; Wendel, J.

10.1101/616763 — genetics — Posted on 2019-11-19

1401 Syndecan-3 enhances anabolic bone formation through WNT signalling

Johnson de Sousa Brito, F. M.; Butcher, A.; Pisconti, A.; Poulet, B.; Prior, A.; Charlesworth, G.; Sperinck, C.; Scotto di Mase, M.; Bou-Gharios, G.; van 't Hof, R. J.; Daroszewska, A.

10.1101/846972 — cell biology — Posted on 2019-11-19

1402 Group I p21-activated kinases (PAKs) are largely dispensable for insulin-stimulated glucose uptake in mouse skeletal muscle

Moller, L. L. V.; Jaurji, M.; Kjobsted, R.; Joseph, G. A.; Madsen, A. B.; Knudsen, J. R.; Lundsgaard, A.-M.; Andersen, N. R.; Schjerling, P.; Jensen, T. E.; Krauss, R. S.; Richter, E. A.; Sylow, L.

10.1101/543736 — cell biology — Posted on 2019-11-19

1403 Distribution of iridescent colours in hummingbird communities results from the interplay between selection for camouflage and communication

Gruson, H.; Elias, M.; Parra, J. L.; Andraud, C.; Berthier, S.; Doutrelant, C.; Gomez, D.

10.1101/586362 — evolutionary biology — Posted on 2019-11-19

1404 Precision-weighting of superior frontal cortex unsigned prediction error signals benefits learning, is mediated by dopamine, and is impaired in psychosis.

Haarsma, J.; Fletcher, P.; Griffin, J.; Taverne, H.; Ziauddeen, H.; Spencer, T.; Miller, C.; Katthagen, T.; Goodyer, I.; Diederen, K.; Murray, G.

10.1101/558478 — neuroscience — Posted on 2019-11-19

1405 Tbet promotes NK cell egress from the bone marrow and CXCR6 expression in immature NK cells

Cuff, A. O.; Perchet, T.; Dertschnig, S.; Golub, R.; Male, V.

10.1101/583575 — immunology — Posted on 2019-11-19

1406 Traces of transposable element in genome dark matter co-opted by flowering gene regulation networks.

Baud, A.; Wan, M.; Nouaud, D.; Anxolabehere, D.; Quesneville, H.

10.1101/547877 — genomics — Posted on 2019-11-19

1407 Hearing impairment due to Mir183/96/182 mutations suggests both loss and gain of function effects

Lewis, M. A.; Di Domenico, F.; Ingham, N. J.; Prosser, H. M.; Steel, K. P.

10.1101/579003 — genetics — Posted on 2019-11-19

1408 Abnormal nitration and S-sulfhydration of Sp1-CSE-H2S pathway contribute to the progress of HHcy

Wang, W.; Luo, C.; Ji, D.; Li, Y.; Cao, Y.; Zhang, S.; Yan, W.; Xue, K.; Chai, J.; Wu, Y.; Liu, H.

10.1101/843854 — pathology — Posted on 2019-11-19

1409 Differential robustness to specific potassium channel deletions in midbrain dopaminergic neurons

Goaillard, J.-M.; Haddjeri-Hopkins, A.; Marqueze-Pouey, B.; Tapia, M.; Tell, F.; Amalric, M.

10.1101/845859 — neuroscience — Posted on 2019-11-19

1410 The rice PPR756 coordinates with MORFs for multiple RNA editing in mitochondria

Zhang, Q.; Xu, Y.; Huang, J.; Zhang, K.; Xiao, H.; Qin, X.; Zhu, L.; Zhu, Y.; Hu, J.

10.1101/844241 — developmental biology — Posted on 2019-11-19

1411 The kinesin-8 Kip3 depolymerizes microtubules with a collective force-dependent mechanism

Bugiel, M.; Chugh, M.; Jachowski, T. J.; Schäffer, E.; Jannasch, A.

10.1101/844829 — biophysics — Posted on 2019-11-19

1412 Dual-sensing genetically encoded fluorescent indicators resolve the spatiotemporal coordination of cytosolic abscisic acid and second messenger dynamics in Arabidopsis

Waadt, R.; Köster, P.; Andres, Z.; Waadt, C.; Bradamante, G.; Lampou, K.; Kudla, J.; Schumacher, K.

10.1101/844118 — plant biology — Posted on 2019-11-19

1413 Identification of hemicatenane-specific binding proteins by fractionation of Hela nuclei extracts

Delagoutte, E.; Rouis, O.; Broussard, c.; Guillonneau, F.; Boule, J.-B.

10.1101/844126 — biochemistry — Posted on 2019-11-19

1414 Plagiarism in Brazil: A perspective of 25,000 PhD holders across the sciences

Vasconcelos, S. M.; Masuda, H.; Sorenson, M. M.; Prosdocimi, F.; Palacios, M.; Watanabe, E.; Pinto, J. C. C.; Lapa e Silva, J. R.; Vieyra, A. R.; Pinto, A.; Mena-Chalco, J.; Sant'Ana, M. C.; Roig, M.

10.1101/825026 — scientific communication and education — Posted on 2019-11-19

1415 A synthetic approach reveals a highly sensitive maize auxin response circuit

Ramos Baez, R.; Buckley, Y.; Yu, H.; Chen, Z.; Gallavotti, A.; Nemhauser, J.; Moss, B. L.

10.1101/844100 — plant biology — Posted on 2019-11-19

1416 Inoculation with the mycorrhizal fungus Rhizophagus irregulars modulates the relationship between root growth and nutrient content in maize (Zea mays L.)

Ramirez Flores, M. R.; Bello-Bello, E.; Rellan Alvarez, R.; Sawers, R. J. H.; Olalde-Portugal, V.

10.1101/695411 — plant biology — Posted on 2019-11-19

1417 Reduced sleep pressure in young children with autism

Arazi, A.; Meiri, G.; Danan, D.; Michaelovski, A.; Flusser, H.; Menashe, I.; Tarasiuk, A.; Dinstein, I.

10.1101/706135 — neuroscience — Posted on 2019-11-19

1418 A size principle for leg motor control in Drosophila

Azevedo, A. W.; Dickinson, E. S.; Gurung, P.; Venkatasubramanian, L.; Mann, R.; Tuthill, J. C.

10.1101/730218 — neuroscience — Posted on 2019-11-19

1419 BK current contributions to action potentials across the first postnatal week reflect age dependent changes in BK current kinetics in rat hippocampal neurons

Hunsberger, M. S.; Mynlieff, M.

10.1101/839233 — neuroscience — Posted on 2019-11-19

1420 Unravelling the modulation of intracortical inhibition during motor imagery: An adaptive threshold-hunting study

Neige, C.; Rannaud-Monany, D.; Stinear, C. M.; Byblow, W.; Papaxanthis, C.; Lebon, F.

10.1101/846931 — neuroscience — Posted on 2019-11-19

1421 Hubs of long-distance co-alteration in brain pathology

Cauda, F.; Mancuso, L.; Nani, A.; Manuello, J.; Liloia, D.; Gelmini, G.; Ficco, L.; Premi, E.; Duca, S.; Costa, T.

10.1101/846642 — neuroscience — Posted on 2019-11-19

1422 Local states of chromatin compaction at transcription start sites control transcription levels

Ishihara, S.; Sasagawa, Y.; Kameda, T.; Umeda, M.; Yamashita, H.; Kotomura, N.; Abe, M.; Shimono, Y.; Nikaido, I.

10.1101/782060 — molecular biology — Posted on 2019-11-19

1423 Optimizing the Timing and Composition of Therapeutic Phage Cocktails: A Control-theoretic Approach

Li, G.; Leung, C. Y.; Wardi, Y.; Debarbieux, L.; Weitz, J.

10.1101/845172 — microbiology — Posted on 2019-11-19

1424 Full-coverage native RNA sequencing of HIV-1 viruses

Gener, A. R.; Kimata, J. T.

10.1101/845610 — genomics — Posted on 2019-11-19

1425 Quantitative translation of dog-to-human aging by conserved remodeling of epigenetic networks

Wang, T.; Ma, J.; Hogan, A. N.; Fong, S.; Licon, K.; Tsui, B.; Kreisberg, J. F.; Adams, P. D.; Carvunis, A.-R.; Bannasch, D.; Ostrander, E. A.; Ideker, T.

10.1101/829192 — evolutionary biology — Posted on 2019-11-19

1426 Live Cell Imaging of Single RNA Molecules with Fluorogenic Mango II Arrays

Cawte, A. D.; Unrau, P. J.; Rueda, D. S.

10.1101/840082 — cell biology — Posted on 2019-11-19

1427 Parallel clines in a quantitative trait in butterfly co-mimics despite different levels of genomic divergence and selection

Curran, E. V.; Stankowski, S.; Pardo-Diaz, C.; Salazar, C.; Linares, M.; Nadeau, N. J.

10.1101/842708 — evolutionary biology — Posted on 2019-11-19

1428 Hepatocytic Prominin-1 protects against liver fibrosis by stabilizing the SMAD7 protein

Lee, H.; Yu, D.-M.; Um, M. J.; Yoon, S. Y.; Kim, K.-T.; Kwon, Y. J.; Lee, S.; Bahn, M.-S.; Koo, S.-H.; Jung, K. H.; Lee, J.-S.; Ko, Y.-G.

10.1101/846493 — cell biology — Posted on 2019-11-19

1429 Correlation Detection with and without the Theories of Conditionals: A model update of Hattori & Oaksford (2007)

Takahashi, T.; Oyo, K.; Tamatsukuri, A.; Higuchi, K.

10.1101/247742 — animal behavior and cognition — Posted on 2019-11-19

1430 Exposure to nicotine vapor causes short-term increases in impulsive choice in rats.

Flores, R. J.; Alshbool, F. Z.; Giner, P.; O'Dell, L. E.; Mendez, I. A.

10.1101/842005 — animal behavior and cognition — Posted on 2019-11-19

1431 Differential impact of self and environmental antigens on the ontogeny and maintenance of CD4+ T cell memory

Hogan, T.; Nowicka, M.; Cownden, D.; Pearson, C.; Yates, A.; Seddon, B.

10.1101/632281 — immunology — Posted on 2019-11-19

1432 Revealing architectural order with quantitative label-free imaging and deep neural networks

Guo, S.-M.; Yeh, L.-H.; Folkesson, J.; Ivanov, I.; Krishnan, A. P.; Keefe, M. G.; Shin, D.; Chhun, B.; Cho, N.; Leonetti, M.; Nowakowski, T. J.; Mehta, S. B.

10.1101/631101 — biophysics — Posted on 2019-11-19

1433 A new long-acting GLP-1 derivative 6- KTP ameliorates body weight and lipid metabolism in DIO mice

peixiu, w.; Ran, Y.

10.1101/846717 — physiology — Posted on 2019-11-18

1434 Inhibitory effects of β-caryophyllene on Helicobacter pylori infection in vitro and in vivo

Woo, H. J.; Yang, J. Y.; Lee, M. H.; Kim, H. W.; Kwon, H. J.; Park, M.; Kim, S.-k.; Park, S.-Y.; Kim, S.-H.; Kim, J.-B.

10.1101/846790 — microbiology — Posted on 2019-11-18

1435 Comparative of probiotics reveals cecal microbial component associated with performance parameters in broilers

Rodrigues, D. R.; Briggs, W.; Duff, A.; Chasser, K.; Murugesan, R.; Pender, C.; Ramirez, S.; Valenzuela, L.; Bielke, L.

10.1101/846766 — microbiology — Posted on 2019-11-18

1436 Transcription-replication conflicts as a source of common fragile site instability caused by BMI1-RNF2 deficiency

Sanchez, A.; de Vivo, A.; Tonzi, P.; Kim, J.; Huang, T.; Kee, Y.

10.1101/846683 — cell biology — Posted on 2019-11-18

1437 Comprehensive biological interpretation of gene signatures using semantic distributed representation

Okuzono, Y.; Hoshino, T.

10.1101/846691 — bioinformatics — Posted on 2019-11-18

1438 Transcriptomic analysis of developing seeds in a wheat mutant RSD32 with reduced seed dormancy

Rikiishi, K.; Sugimoto, M.; Maekawa, M.

10.1101/846782 — plant biology — Posted on 2019-11-18

1439 Effect of crocin and naringenin supplementation in cryopreservation medium on post-thawed rooster sperm quality and expression of apoptosis associated genes

Mehdipour, M.; Daghigh Kia, H.; Najafi, A.

10.1101/846758 — physiology — Posted on 2019-11-18

1440 Effects of fasting induced carbohydrate depletion on murine ischemic skeletal muscle function.

Schmidt, C. A.; Goldberg, E. J.; Green, T. D.; Karnekar, R. R.; Brault, J. J.; Miller, S. G.; Amorese, A. J.; Yamaguchi, D. J.; Spangenburg, E. E.; McClung, J. M.

10.1101/846774 — physiology — Posted on 2019-11-18

1441 Nutritional Programming Improves Dietary Plant Protein Utilization in Zebrafish Danio rerio

Kwasek, K.; Wojno, M.; Terova, G.; McCracken, V. J.; Molinari, G. S.; Iannini, F.

10.1101/846725 — physiology — Posted on 2019-11-18

1442 Flexible working memory through selective gating and attentional tagging

Kruijne, W.; Bohte, S. M.; Roelfsema, P. R.; Olivers, C. N. L.

10.1101/846675 — neuroscience — Posted on 2019-11-18

1443 Antifungal activity of silver nanoparticles during in-vitro culture of Stevia rebaudiana Bertoni

Ramirez-Mosqueda, M. A.; Sanchez-Segura, L.; Hernandez-Valladolid, S. L.; Bello-Bello, E.; Bello, J.

10.1101/846733 — microbiology — Posted on 2019-11-18

1444 Assessing the effects of agricultural intensification on natural habitats and biodiversity in Southern Amazonia

Göpel, J.; Schüngel, J.; Schaldach, R.; Stuch, B.; Löbelt, N.

10.1101/846709 — ecology — Posted on 2019-11-18

1445 Characterizing changes in land cover and forest fragmentation in Dhorpatan Hunting Reserve of Nepal from multi-temporal Landsat observations (1993-2018)

Sharma, S.; Bista, M.; Mingshi, L.

10.1101/846741 — ecology — Posted on 2019-11-18

1446 The proteome of small urinary extracellular vesicles after kidney transplantation as an indicator of renal cellular biology and a source for markers predicting outcome

Braun, F.; Rinschen, M.; Buchner, D.; Bohl, K.; Spaeth, M.; Goebel, H.; Klein, C.; Kretz, O.; Puelles, V. G.; Bachurski, D.; Plagmann, I.; Wahba, R.; Hallek, M.; Schermer, B.; Benzing, T.; Huber, T. B.; Beyer, A.; Stippel, D.; Kurschat, C. E.; Mueller, R.-U.

10.1101/845941 — molecular biology — Posted on 2019-11-18

1447 Quantitative analysis of how Myc controls T cell proteomes and metabolic pathways during T cell activation

Marchingo, J. M.; Sinclair, L. V.; Howden, A. J.; Cantrell, D. A.

10.1101/846998 — immunology — Posted on 2019-11-18

1448 Temporally-precise disruption of prefrontal cortex informed by the timing of beta bursts impairs human action-stopping

Hannah, R.; Muralidharan, V.; Sundby, K. K.; Aron, A. R.

10.1101/843557 — neuroscience — Posted on 2019-11-18

1449 Geometric principles underlying the proliferation of a model cell system

Wu, L. J.; Lee, S.; Park, S.; Eland, L.; Wipat, A.; Holden, S.; Errington, J.

10.1101/843979 — microbiology — Posted on 2019-11-18

1450 G-Graph: An interactive genomic graph viewer

Andrews, P. A.; Alexander, J.; Kendall, J.; Wigler, M.

10.1101/803015 — genomics — Posted on 2019-11-18

1451 cando.py: Open source software for analyzing large scale drug-protein-disease data

Mangione, W.; Falls, Z.; Chopra, G.; Samudrala, R.

10.1101/845545 — bioinformatics — Posted on 2019-11-18

1452 Rapid acquisition of near optimal stopping using Bayesian by-products

Calder-Travis, J.; Slade, E.

10.1101/844969 — neuroscience — Posted on 2019-11-18

1453 Predictive Coding Models for Pain Perception

Song, Y.; Yao, M.; Kemprecos, H.; byrne, a.; Xiao, Z.; Zhang, Q.; Singh, A.; Wang, J.; Chen, Z. S.

10.1101/843284 — neuroscience — Posted on 2019-11-18

1454 Hubs of long-distance co-alteration in brain pathology

Cauda, F.; Mancuso, L.; Nani, A.; Manuello, J.; Liloia, D.; Gelmini, G.; Ficco, L.; Premi, E.; Duca, S.; Costa, T.

10.1101/846642 — neuroscience — Posted on 2019-11-18

1455 Leishmania infection induces a limited differential gene expression in the sand fly midgut

Coutinho-Abreu, I. V.; Serafim, T. D.; Meneses, C.; Kamhawi, S.; Oliveira, F.; Valenzuela, J. G.

10.1101/845867 — microbiology — Posted on 2019-11-18

1456 Natural Killer cells dampen the pathogenic features of recall responses to influenza infection.

Mooney, J. P.; Qendro, T.; Keith, M.; Philbey, A. W.; Groves, H. T.; Tregoning, J. P.; Goodier, M. R.; Riley, E. M.

10.1101/846626 — immunology — Posted on 2019-11-18

1457 Cell-type specificity of neuronal excitability and morphology in the central amygdala

Adke, A. P.; Khan, A.; Ahn, H.-S.; Becker, J. J.; Wilson, T. D.; Valdivia, S.; Sugimura, Y. K.; Martinez Gonzalez, S.; Carrasquillo, Y.

10.1101/832295 — neuroscience — Posted on 2019-11-18

1458 A genomic dating tool for ancient genomes resolves the origins of hundreds of Eurasian genomes

Esposito, U.; Holland, G.; Alshehab, G.; Dobre, A. M.; Pirooznia, M.; Brimacombe, C.; Elhaik, E.

10.1101/828962 — genomics — Posted on 2019-11-18

1459 Decoding and encoding models reveal how the depth of processing shapes the brain representation of meaning

Soto, D.; Sheikh, U. A.; Mei, N.; Santana, R.

10.1101/830448 — neuroscience — Posted on 2019-11-18

1460 Chromosome painting does not support a sex chromosome turnover in Lacerta agilis Linnaeus, 1758

Lisachov, A.; Giovannotti, M.; Pereira, J. C.; Andreyushkova, D.; Romanenko, S.; Ferguson-Smith, M. A.; Borodin, P.; Trifonov, V.

10.1101/846501 — evolutionary biology — Posted on 2019-11-18

1461 Accurate Fetal Variant Calling in the Presence of Maternal Cell Contamination

Nabieva, E.; Mishra Sharma, S.; Kapushev, Y.; Garushyans, S. K.; Fedotova, A. V.; Moskalenko, V. N.; Serebrenikova, T.; Glazyrina, E.; Kanivets, I. V.; Pyankov, D. V.; Neretina, T. V.; Logacheva, M. D.; Bazykin, G. A.; Yarotsky, D.

10.1101/552414 — bioinformatics — Posted on 2019-11-18

1462 Quantitative analysis of the physiological contributions of glucose to the TCA cycle

Liu, S.; Dai, Z.; Cooper, D.; Kirsch, D. G.; Locasale, J.

10.1101/840538 — systems biology — Posted on 2019-11-18

1463 Parameter fitting using time-scale analysis for vector-borne diseases with spatial dynamics

Sartori, L. M.; Pereira, M. C.; Oliva, S. M.

10.1101/759308 — scientific communication and education — Posted on 2019-11-18

1464 Cultivar-specific transcriptome and pan-transcriptome reconstruction of tetraploid potato

Petek, M.; Zagorscak, M.; Ramsak, Z.; Sanders, S.; Tseng, E.; Zouine, M.; Coll, A.; Gruden, K.

10.1101/845818 — plant biology — Posted on 2019-11-18

1465 Evaluation of Dose Fractionated Polymyxin B on Acute Kidney Injury: A Translational In Vivo Model

Liu, J.; Pais, G. M.; Avedissian, S. N.; Gilchrist, A.; Lee, A.; Rhodes, N. J.; Hauser, A. R.; Scheetz, M. H.

10.1101/845024 — pharmacology and toxicology — Posted on 2019-11-18

1466 Volume-wise analysis of fMRI time series allows accurate prediction of language lateralization

Wegrzyn, M.; Mertens, M.; Bien, C. G.; Woermann, F. G.; Labudda, K.

10.1101/725671 — neuroscience — Posted on 2019-11-18

1467 Small non-significant increments in single-subject voxel-wise statistics lead to significant group level improvements with multiband for task-based fMRI

Bhandari, R.; Gazzola, V.; Keysers, C.

10.1101/756361 — neuroscience — Posted on 2019-11-18

1468 Interrogating theoretical models of neural computation with deep inference

Bittner, S. R.; Palmigiano, A.; Piet, A. T.; Duan, C. A.; Brody, C. D.; Miller, K. D.; Cunningham, J. P.

10.1101/837567 — neuroscience — Posted on 2019-11-18

1469 Horizontal gene transfer drives the evolution of dependencies in bacteria

Goyal, A.

10.1101/836403 — microbiology — Posted on 2019-11-18

1470 Senescence of alveolar stem cells drives progressive pulmonary fibrosis

Yao, C.; Guan, X.; Carraro, G.; Parimon, T.; Liu, X.; Huang, G.; Soukiasian, H.; David, G.; Weight, S. S.; Belperio, J. A.; Chen, P.; Jiang, D.; Noble, P. W.; Stripp, B. R.

10.1101/820175 — cell biology — Posted on 2019-11-18

1471 Training deep neural density estimators to identify mechanistic models of neural dynamics

Goncalves, P. J.; Lueckmann, J.-M.; Deistler, M.; Nonnenmacher, M.; Öcal, K.; Bassetto, G.; Chintaluri, C.; Podlaski, W. F.; Haddad, S. A.; Vogels, T. P.; Greenberg, D. S.; Macke, J. H.

10.1101/838383 — neuroscience — Posted on 2019-11-18

1472 Transversal otolithic membrane deflections evoked by the linear accelerations

Goussev, V.

10.1101/844977 — biophysics — Posted on 2019-11-18

1473 Histone methyltransferase DOT1L controls state-specific identity during B cell differentiation

Aslam, M. A.; Alemdehy, M. F.; Kwesi-Maliepaard, E. M.; Caganova, M.; Pardieck, I. N.; van den Brand, T.; Muhaimi, F. I.; van Welsem, T.; de Rink, I.; Song, J.-Y.; de Wit, E.; Arens, R.; Rajewsky, K.; Jacobs, H.; van Leeuwen, F.

10.1101/826370 — immunology — Posted on 2019-11-18

1474 Effects of the cannabinoid receptor agonist CP-55,940 on incentive salience attribution

Gheidi, A.; Cope, L. M.; Froehlich, B. N.; Atkinson, R.; Groves, C. K.; Barcelo, C. N.; Morrow, J. D.

10.1101/767103 — neuroscience — Posted on 2019-11-18

1475 C9orf72-derived arginine-containing dipeptide repeats associate with axonal transport machinery and impede microtubule-based motility

10.1101/835082 — neuroscience — Posted on 2019-11-18

1476 Low-disturbance farming regenerates healthy critical zone towards sustainable agriculture

Deng, F.; Wang, H.; Xie, H.; Bao, X.; He, H.; Zhang, X.; Liang, C.

10.1101/828673 — ecology — Posted on 2019-11-18

1477 The histone methyltransferase DOT1L prevents antigen-independent differentiation and safeguards epigenetic identity of CD8+ T cells

Kwesi-Maliepaard, E. M.; Aslam, M. A.; Alemdehy, M. F.; van den Brand, T.; McLean, C.; Vlaming, H.; van Welsem, T.; Korthout, T.; Lancini, C.; Hendriks, S.; Ahrends, T.; van Dinther, D.; den Haan, J. M.; Borst, J.; de Wit, E.; van Leeuwen, F.; Jacobs, H.

10.1101/826255 — immunology — Posted on 2019-11-18

1478 Dynamics of genetic variation in Transcription Factors and its implications for the evolution of regulatory networks in Bacteria

Ali, F.; Seshasayee, A. S. N.

10.1101/785691 — evolutionary biology — Posted on 2019-11-18

1479 Towards an information theory of quantitative genetics

Galas, D. J.; Kunert-Graf, J. M.; Uechi, L.; Sakhanenko, N. A.

10.1101/811950 — genetics — Posted on 2019-11-18

1480 Tissue micro-RNAs associated with colorectal cancer prognosis: a systematic review

Lopes dos Santos, I.; Greick Batista Dias Penna, K.; Aparecida dos Santos Carneiro, M.; Silva Dalla Libera, L.; Enocencio Porto Ramos, J.; Aparecida Saddi, V.

10.1101/701128 — molecular biology — Posted on 2019-11-18

1481 Finding missing links in interaction networks

Terry, J. C.; Lewis, O.

10.1101/695726 — ecology — Posted on 2019-11-18

1482 Deep-learning-based cell composition analysis from tissue expression profiles.

Menden, K.; Marouf, M.; Oller, S.; Dalmia, A.; Kloiber, K.; Heutink, P.; Bonn, S.

10.1101/659227 — bioinformatics — Posted on 2019-11-18

1483 Dedifferentiation and neuronal repression define Familial Alzheimer's Disease

Caldwell, A. B.; Liu, Q.; Schroth, G. P.; Galasko, D. R.; Yuan, S. H.; Wagner, S. L.; Subramaniam, S.

10.1101/531202 — neuroscience — Posted on 2019-11-18

1484 Neurocognitive reorganization between crystallized intelligence, fluid intelligence and white matter microstructure in two age-heterogeneous developmental cohorts

Simpson-Kent, I.; Fuhrmann, D.; Bathelt, J.; Achterberg, J.; Borgeest, G. S.; Kievit, R.

10.1101/593509 — neuroscience — Posted on 2019-11-18

1485 Spectral Graph Theory of Brain Oscillations

Raj, A.; Cai, C.; Xie, X.; Palacios, E.; Owen, J.; Mukherjee, P.; Nagarajan, S.

10.1101/589176 — neuroscience — Posted on 2019-11-18

1486 Visual and auditory brain areas share a neural code for perceived emotion

Sievers, B.; Parkinson, C.; Kohler, P. J.; Hughes, J.; Fogelson, S. V.; Wheatley, T.

10.1101/254961 — neuroscience — Posted on 2019-11-18

1487 The number of k-mer matches between two DNA sequences as a function of k and applications to estimate phylogenetic distances

Röhling, S.; Linne, A.; Schellhorn, J.; Hosseini, M.; Dencker, T.; Morgenstern, B.

10.1101/527515 — bioinformatics — Posted on 2019-11-18

1488 Unravelling the modulation of intracortical inhibition during motor imagery: An adaptive threshold-hunting study

Neige, C.; Rannaud-Monnany, D.; Stinear, C. M.; Byblow, W.; Papaxanthis, C.; Lebon, F.

10.1101/846931 — neuroscience — Posted on 2019-11-18

1489 NuA4-dependent H4 acetylation is adopted to specifically control photosynthesis-related genes

Bieluszewski, T.; Sura, W.; Bieluszewska, A.; Kabza, M.; Abram, M.; Wlodzimierz, P.; Dziegielewski, W.; Szymanska-Lejman, M.; Lachance, C.; De Winne, N.; De Jaeger, G.; Cote, J.; Sadowski, J.; Ziolkowski, P. A.

10.1101/846592 — molecular biology — Posted on 2019-11-18

1490 Oxidative and non-oxidative active turnover of genomic methylcytosine in distinct pluripotent states

Spada, F.; Schiffers, S.; Kirchner, A.; Zhang, Y.; Kosmatchev, O.; Korytiakova, E.; Rahimoff, R.; Ebert, C.; Carell, T.

10.1101/846584 — cell biology — Posted on 2019-11-18

1491 Short-term effects of sound localization training in virtual reality

Steadman, M. A.; Kim, C.; Lestang, J.-H.; Goodman, D. F. M.; Picinali, L.

10.1101/207753 — neuroscience — Posted on 2019-11-18

1492 Selective sweeps under dominance and inbreeding

Hartfield, M.; Bataillon, T.

10.1101/318410 — evolutionary biology — Posted on 2019-11-18

1493 Rates of molecular evolution predict intraspecies genetic diversity

Wu, J.; Yonezawa, T.; Kishino, H.

10.1101/846824 — evolutionary biology — Posted on 2019-11-18

1494 Isogenic sets of hiPSC-CMs harboring KCNH2 mutations capture location-related phenotypic differences

Brandao, K. O.; van den Brink, L.; Miller, D. C.; Grandela, C.; van Meer, B. J.; Mol, M.; Tertoolen, L. G. J.; Mummery, C. L.; Sala, L.; Verkerk, A. O.; Davis, R. P.

10.1101/846519 — cell biology — Posted on 2019-11-18

1495 Tempora: cell trajectory inference using time-series single-cell RNA sequencing data

Tran, T. N.; Bader, G.

10.1101/846907 — bioinformatics — Posted on 2019-11-18

1496 Enhanced representation of natural sound sequences in the ventral auditory midbrain

Gonzalez-Palomares, E.; Lopez-Jury, L.; Garcia-Rosales, F.; Hechavarria, J. C.

10.1101/846485 — neuroscience — Posted on 2019-11-18

1497 Quantitative analysis of 1300-nm three-photon calcium imaging in the mouse brain

Wang, T.; Wu, C.; Ouzounov, D. G.; Gu, W.; Xia, F.; Kim, M.; Yang, X.; Warden, M. R.; Xu, C.

10.1101/846535 — neuroscience — Posted on 2019-11-18

1498 The Human Brain encodes a Chronicle of Visual Events at each Instant of Time

King, J.-R.; Wyart, V.

10.1101/846576 — neuroscience — Posted on 2019-11-18

1499 Mapping the cell-surface proteome underlying hippocampal mossy fiber synapse identity

Apostolo, N.; Smukowski, S. N.; Vanderlinden, J.; Condomitti, G.; Rybakin, V.; ten Bos, J.; Portegies, S.; Vennekens, K. M.; Gounko, N. V.; Wierda, K. D.; Savas, J. N.; de Wit, J.

10.1101/846816 — neuroscience — Posted on 2019-11-18

1500 Dynamical informational structures characterize the different human brain states of wakefulness and deep sleep

Galadi, J. A.; Silva Pereira, S.; Sanz Perl, Y.; Kringelbach, M. L.; Gayte, I.; Laufs, H.; Tagliazucchi, E.; Langa, J. A.; Deco, G.

10.1101/846667 — neuroscience — Posted on 2019-11-18

1501 Programmable CRISPR interference for gene silencing using Cas13a in mosquitoes

Kulkarni, A.; Yu, W.; Moon, A. S.; Pandey, A.; Hanley, K. A.; Xu, J.

10.1101/846055 — molecular biology — Posted on 2019-11-18

1502 Chromosome painting does not support a sex chromosome turnover in Lacerta agilis Linnaeus, 1758

Lisachov, A.; Giovannotti, M.; Pereira, J. C.; Andreyushkova, D.; Romanenko, S.; Ferguson-Smith, M. A.; Borodin, P.; Trifonov, V.

10.1101/846501 — evolutionary biology — Posted on 2019-11-18

1503 Approximating the coalescent under facultative sex

Hartfield, M.

10.1101/846568 — evolutionary biology — Posted on 2019-11-18

1504 The transcriptomic response of cells to a drug combination is more than the sum of the responses to the monotherapies

Diaz, J. E. L.; Ahsen, M. E.; Schaffter, T.; Chen, X.; Realubit, R. B.; Karan, C.; Califano, A.; Losic, B.; Stolovitzky, G.

10.1101/846915 — cell biology — Posted on 2019-11-18

1505 Osmotic stress-induced, rapid clustering of IGF2BP proteins nucleates stress granule assembly

Zeng, W.-J.; Lu, C.; Shi, Y.; Chen, X.; Yao, J.

10.1101/846659 — cell biology — Posted on 2019-11-18

1506 Hepatocytic Prominin-1 protects liver fibrosis by stabilizing the SMAD7 protein

Lee, H.; Yu, D.-M.; Um, M. J.; Yoon, S. Y.; Kim, K.-T.; Kwon, Y. J.; Lee, S.; Bahn, M.-S.; Jung, K. H.; Lee, J.-S.; Ko, Y.-G.

10.1101/846493 — cell biology — Posted on 2019-11-18

1507 Bridging of nucleosome-proximal DNA double-strand breaks by PARP2 enhances its interaction with HPF1

Gaullier, G.; Roberts, G.; Muthurajan, U. M.; Bowerman, S.; Rudolph, J.; Mahadevan, J.; Jha, A.; Rae, P. S.; Luger, K.

10.1101/846618 — biochemistry — Posted on 2019-11-18

1508 Ibotenic acid biosynthesis in the fly agaric is initiated by glutamate hydroxylation

Obermaier, S.; Mueller, M.

10.1101/846857 — biochemistry — Posted on 2019-11-18

1509 The extended recovery ring stage survival assay provides superior prediction of patient clearance half life and increases throughput

Davis, S. Z.; Singh, P. P.; Vendrely, K. M.; Shoue, D.; Checkley, L. A.; McDew-White, M.; Button-Simons, K. A.; Cassady, Z.; Sievert, M. A. C.; Foster, G. J.; Nosten, F. H.; Anderson, T.; Ferdig, M. T.

10.1101/846329 — microbiology — Posted on 2019-11-18

1510 In situ cryo-electron tomography reveals filamentous actin within the microtubule lumen

Paul, D. M.; Mantell, J.; Borucu, U.; Coombs, J.; Surridge, K. J.; Squire, J. M.; Verkade, P.; Dodding, M. P.

10.1101/844043 — cell biology — Posted on 2019-11-18

1511 Nonlinear mechanics of lamin filaments and the meshwork topology build an emergent nuclear lamina

Sapra, T.; Qin, Z.; Buehler, M. J.; Aebi, U.; Dubrowsky-Gaupp, A.; Mueller, D. J.; Medalia, O.

10.1101/846550 — biophysics — Posted on 2019-11-18

1512 A comprehensive online database for exploring ~20,000 public Arabidopsis RNA-Seq libraries

Zhang, H.; Zhang, F.; Feng, L.; Jia, J.; Zhai, J.

10.1101/844522 — bioinformatics — Posted on 2019-11-18

1513 UFMylation of MRE11 is essential for telomere length and hematopoietic stem cell survival

Lee, L.; Perez Oliva, A. B.; Churikov, D.; Martinez-Balsalobre, E.; Peter, J.; Rahmouni, D.; Audoly, G.; Azzoni, V.; Audebert, S.; Camoin, L.; Mulero, V.; Cayuela, M. L.; Geli, V.; Kulathu, Y.; lachaud, c.

10.1101/846477 — molecular biology — Posted on 2019-11-18

1514 bsAS, an antisense long non-coding RNA, controls cell fate through regulation of blistered/DSRF isoform expression

Perez-Lluch, S.; Breschi, A.; Klein, C. C.; Ruiz-Romero, M.; Abad, A.; Palumbo, E.; Bekish, L.; Arnan, C.; Guigo, R.

10.1101/846451 — molecular biology — Posted on 2019-11-18

1515 The population genomics of structural variation in a songbird genus

Weissensteiner, M. H.; Bunikis, I.; Catalan, A.; Francoijs, K.-J.; Knief, U.; Heim, W.; Peona, V.; Pophaly, S.; Sedlazeck, F.; Suh, A.; Warmuth, V.; Wolf, J.

10.1101/830356 — genomics — Posted on 2019-11-18

1516 The gut microbiota may drive the radiosensitising effect of a high fibre diet

Then, C. K.; Paillas, S.; Hampson, A.; Kiltie, A.

10.1101/846436 — cancer biology — Posted on 2019-11-18

1517 A genetic map of the response to DNA damage in human cells

Olivieri, M.; Cho, T.; Alvarez-Quilon, A.; Li, K.; Schellenberg, M. J.; Zimmermann, M.; Hustedt, N.; Rossi, S. E.; Adam, S.; Melo, H.; Heijink, A. M.; Sastre-Moreno, G.; Moatti, N.; Szilard, R.; McEwan, A.; Ling, A. K.; Serrano-Benitez, A.; Ubhi, T.; Delgado-Sainz, I.; Ferguson, M. W.; Brown, G. W.; Cortes-Ledesma, F.; Williams, R. S.; Martin, A.; Xu, D.; Durocher, D.

10.1101/845446 — cancer biology — Posted on 2019-11-18

1518 FastFeatGen: Faster parallel feature extraction from genome sequences and efficient prediction of DNA N6-methyladenine sites

Rahman, M. K.

10.1101/846311 — bioinformatics — Posted on 2019-11-18

1519 A hybrid model for predicting pattern recognition receptors using evolutionary information

Kaur, D.; Arora, C.; Raghava, G. P. S.

10.1101/846469 — bioinformatics — Posted on 2019-11-18

1520 Unveiling the physiological mechanisms that drive the emergence of antibiotic resisters from antibiotic persister population of mycobacteria

Jakkala, K.; Sharan, D.; Nair, R. R.; Paul, A.; Pradhan, A.; Ajitkumar, P.

10.1101/846378 — microbiology — Posted on 2019-11-18

1521 Recombination, variance in genetic relatedness, and selection against introgressed DNA

Veller, C.; Edelman, N. B.; Muralidhar, P.; Nowak, M. A.

10.1101/846147 — evolutionary biology — Posted on 2019-11-18

1522 Structural insights into filament recognition by cellular actin markers

Kumari, A.; Kesarwani, S.; Javoor, M. G.; Vinothkumar, K. R.; Sirajuddin, M.

10.1101/846337 — cell biology — Posted on 2019-11-18

1523 The association between mineralised tissue formation and the mechanical local in vivo environment: Time-lapsed quantification of a mouse defect healing model

Tourolle ne Betts, D.; Wehrle, E.; Paul, G. R.; Kuhn, G. A.; Christen, P.; Hofmann, S.; Muller, R.

10.1101/721365 — bioengineering — Posted on 2019-11-18

1524 Counting the paternal founders of Austroasiatic speakers associated with the language dispersal in South Asia

Singh, P. P.; Vishwakarma, S.; Sultana, G. N. N.; Pilvar, A.; Karmin, M.; Rootsi, S.; Villems, R.; Metspalu, M.; Behar, D.; Kivisild, T.; van Driem, G.; Chaubey, G.

10.1101/843672 — evolutionary biology — Posted on 2019-11-18

1525 HIV-1 genome trafficking initiates APOBEC3G packaging in the cytosol

Becker, J. T.; Evans, E. L.; Benner, B. E.; Fricke, S. L.; Smith, L. E.; Bates, A. E.; Sherer, N. M.

10.1101/846105 — cell biology — Posted on 2019-11-18

1526 Propagation of THz irradiation energy through aqueous layers: Demolition of actin filaments in living cells

Yamazaki, S.; Harata, M.; Ueno, Y.; Tsubouchi, M.; Konagaya, K.; Ogawa, Y.; Isoyama, G.; Otani, C.; Hoshina, H.

10.1101/846295 — cell biology — Posted on 2019-11-18

1527 Prediction of GPI-Anchored proteins with pointer neural networks

Gislason, M. H.; Nielsen, H.; Almagro Armenteros, J. J.; Johansen, A. R.

10.1101/838680 — bioinformatics — Posted on 2019-11-18

1528 Improved protein structure prediction using predicted inter-residue orientations

Yang, J.; Anishchenko, I.; Park, H.; Peng, Z.; Ovchinnikov, S.; Baker, D.

10.1101/846279 — bioinformatics — Posted on 2019-11-18

1529 Inferring transcriptional regulators through integrative modeling ofpublic chromatin accessibility and ChIP-seq data

Qin, Q.; Fan, J.; Zheng, R.; Wan, C.; Mei, S.; Wu, Q.; Sun, H.; Zhang, J.; Brown, M.; Meyer, C. A.; Liu, X. S.

10.1101/846139 — bioinformatics — Posted on 2019-11-18

1530 Decentralized multi-site VBM analysis during adolescence shows structural changes linked to age, body mass index, and smoking: A COINSTAC analysis

Gazula, H.; Holla, B.; Zhang, Z.; Xu, J.; Verner, E.; Kelly, R.; Schumann, G.; Calhoun, V.

10.1101/846386 — neuroscience — Posted on 2019-11-18

1531 Development of a multiplexed qPCRs-based approach for the diagnosis of Dirofilaria immitis, D. repens, Acanthocheilonema reconditum and the others filariosis

Laidoud, Y.; Davoust, B.; Varloud, M.; Niang El Hadj, A.; Fenollar, F.; Mediannikov, O.

10.1101/842575 — molecular biology — Posted on 2019-11-18

1532 Widespread haploid-biased gene expression in mammalian spermatogenesis associated with frequent selective sweeps and evolutionary conflict

Bhutani, K.; Stansifer, K.; Ticau, S.; Bojic, L.; Villani, C.; Slisz, J.; Cremers, C.; Roy, C.; Donovan, J.; Fiske, B.; Friedman, R. C.

10.1101/846253 — genetics — Posted on 2019-11-18

1533 Therapeutic efficacy of an immune stimulatory gene therapy strategy in a mouse model of high grade brainstem glioma

Mendez, F. M.; Kadiyala, P.; Nunez, F. J.; Carney, S.; Nunez, F.; Gauss, J. C.; Ravindran, R.; Pawar, S.; Edwards, M.; Lowenstein, P.; Castro, M. G.

10.1101/846097 — cancer biology — Posted on 2019-11-18

1534 Robust banded protoxylem pattern formation through microtubule-based directional ROP diffusion restriction

Jacobs, B.; Molenaar, J.; Deinum, E. E.

10.1101/844357 — biophysics — Posted on 2019-11-18

1535 A Spectral De-mixing Model for Triplex In Vivo Imaging of Optical Coherence Tomography Contrast Agents

Yuan, E.; Si, P.; Shevidi, S.; de la Zerda, A.

10.1101/846170 — biophysics — Posted on 2019-11-18

1536 The substrate-dependent stereoselectivity of the multicopper oxidase (MCO)-catalyzed oxidative coupling in the biosynthesis of the bisnaphthopyrone viriditoxin

Hu, J.; Flematti, G.; Chooi, Y.-H.

10.1101/846196 — biochemistry — Posted on 2019-11-18

1537 The Mitochondrial Iron Regulated (MIR) gene is Oryza genus-specific and evolved before the speciation of major AA-genome lineages

de Oliveira, B. H. N.; Wairich, A.; Turchetto-Zolet, A. C.; Fett, J. P.; Ricachenevsky, F. K.

10.1101/846212 — plant biology — Posted on 2019-11-18

1538 Neural correlates of episodic memory modulated by temporally delayed rewards

Yoo, J.; Min, S.; Lee, S.-K.; Han, S.

10.1101/842443 — neuroscience — Posted on 2019-11-18

1539 Throwing shade: Physiological responses to light explain competition and facilitation in a tree diversity experiment

Kothari, S.; Montgomery, R. A.; Cavender-Bares, J. M.

10.1101/845701 — ecology — Posted on 2019-11-18

1540 Individual kinetochore-fibers locally dissipate force to maintain robust mammalian spindle structure

Long, A. F.; Suresh, P.; Dumont, S.

10.1101/846154 — cell biology — Posted on 2019-11-18

1541 Genome-wide association study identifies 48 common genetic variants associated with handedness.

Cuellar Partida, G.; Tung, J. Y.; Eriksson, N.; Albrecht, E.; Aliev, F.; Andreassen, O. A.; Barroso, I.; Beckmann, J. S.; Boks, M. P.; Boomsma, D. I.; Boyd, H. A.; Breteler, M. M.; Campbell, H.; Chasman, D. I.; Cherkas, L. F.; Davies, G.; de Geus, E. J.; Deary, I. J.; Deloukas, P.; Dick, D. M.; Duffy, D. L.; Eriksson, J. G.; Esko, T.; Feenstra, B.; Geller, F.; Gieger, C.; Giegling, I.; Gordon, S. D.; Han, J.; Hansen, T. F.; Hartmann, A. M.; Heikkila, K.; Hicks, A. A.; Hayward, C.; Hirschhorn, J. N.; Hottenga, J.-J.; Huffman, J. E.; Hwang, L.-D.; Ikram, M. A.; Kaprio, J.; Kemp, J. P.; Khaw, K.-

10.1101/831321 — genetics — Posted on 2019-11-18

1542 Homo-Oligomerisation in Signal Transduction: Dynamics, Homeostasis, Ultrasensitivity, Bistability

Koch, D.

10.1101/758789 — systems biology — Posted on 2019-11-18

1543 Deficits in monitoring self-produced speech in Parkinson's disease

Railo, H.; Nokelainen, N.; Savolainen, S.; Kaasinen, V.

10.1101/823674 — neuroscience — Posted on 2019-11-18

1544 Ecological character displacement destabilizes food webs

Barbour, M. A.

10.1101/824615 — ecology — Posted on 2019-11-18

1545 Mechanosensitive nuclear asymmetries define a bipolar spindle scaffold to ensure mitotic fidelity

Nunes, V.; Dantas, M.; Castro, D.; Vitiello, E.; Wang, I.; Carpi, N.; Balland, M.; Piel, M.; Aguiar, P.; Maiato, H.; Ferreira, J. G.

10.1101/526939 — cell biology — Posted on 2019-11-18

1546 DeepSide: A Deep Learning Framework for Drug Side Effect Prediction

Uner, O. C.; Cinbis, R. G.; Tastan, O.; Cicek, A. E.

10.1101/843029 — bioinformatics — Posted on 2019-11-18

1547 Oral feeding with probiotic Lactobacillus rhamnosus attenuates cigarette smoke-induced COPD in C57Bl/6 mice: Relevance to inflammatory markers in human bronchial epithelial cells

Carvalho, J. L.; Miranda, M.; Fialho, A. K.; Castro-Faria-Neto, H.; Anatriello, E.; Keller, A. C.; Aimbire, F.

10.1101/843433 — immunology — Posted on 2019-11-18

1548 On the early-life origins of vulnerability to opioid addiction

Levis, S. C.; Bentzley, B. S.; Molet, J.; Bolton, J. L.; Perrone, C. R.; Baram, T. Z.; Mahler, S. V.

10.1101/716522 — neuroscience — Posted on 2019-11-18

1549 Capturing cell type-specific chromatin structural patterns by applying topic modeling to single-cell Hi-C data

Kim, H.-J.; Yardimici, G. G.; Bonora, G.; Ramani, V.; Liu, J.; Qiu, R.; Lee, C.; Hesson, J.; Ware, C. B.; Shendure, J.; Duan, Z.; Noble, W. S.

10.1101/534800 — genomics — Posted on 2019-11-18

1550 Muller's Ratchet and the Long-Term Fate of Chromosomal Inversions

Berdan, E.; Blanckaert, A.; Butlin, R. K.; Bank, C.

10.1101/606012 — evolutionary biology — Posted on 2019-11-18

1551 Evidence for mutation-order speciation in an Australian wildflower

Melo, M. C.; James, M. E.; Roda, F.; Bernal-Franco, D. M.; Wilkinson, M. J.; Liu, H.; Walter, G. M.; Ortiz-Barrientos, D.

10.1101/692673 — evolutionary biology — Posted on 2019-11-18

1552 Recently formed context fear memories can be retrieved without the hippocampus

Krueger, J. N.; Wilmot, J. H.; Teratani-Ota, Y.; Puhger, K. R.; Nemes, S. E.; Lafreniere, M.; Wiltgen, B. J.

10.1101/843342 — neuroscience — Posted on 2019-11-18

1553 The intersectional genetics landscape for human

Macedo, A.; Gontijo, A. M.

10.1101/552984 — bioinformatics — Posted on 2019-11-18

1554 Adult Muscle Stem Cell Self-Renewal Induced by Endurance Exercise is Mediated by Inhibition of Mitochondrial Oxygen Consumption

Abreu, P.; Kowaltowski, A. J.

10.1101/845438 — biochemistry — Posted on 2019-11-18

1555 Critical Role for the Unique N-Terminus of Chlamydial MreB in Directing Its Membrane Association and Interaction with Elements of the Divisome

Lee, J.; Cox, J. V.; Ouellette, S. P.

10.1101/697953 — microbiology — Posted on 2019-11-18

1556 Replicated anthropogenic hybridisations reveal parallel patterns of admixture in marine mussels.

Simon, A.; Arbiol, C.; Nielsen, E. E.; Couteau, J.; Sussarellu, R.; Burgeot, T.; Bernard, I.; Coolen, J. W. P.; Lamy, J.-B.; Robert, S.; Skazina, M.; Strelkov, P.; Queiroga, H.; Cancio, I.; Welch, J. J.; Viard, F.; Bierne, N.

10.1101/590737 — evolutionary biology — Posted on 2019-11-18

1557 Divergence in hormone signalling links local adaptation and hybrid failure

Wilkinson, M. J.; Roda, F.; Walter, G. M.; James, M. E.; Nipper, R.; Walsh, J.; Allen, S.; Bernal, D. M.; North, H.; Beveridge, C.; Ortiz-Barrientos, D.

10.1101/845354 — evolutionary biology — Posted on 2019-11-18

1558 A Single Cell Transcriptomic Atlas Characterizes Aging Tissues in the Mouse

The Tabula Muris Consortium, ; Pisco, A. O.; McGeever, A.; Schaum, N.; Karkanias, J.; Neff, N. F.; Darmanis, S.; Wyss-Coray, T.; Quake, S. R.

10.1101/661728 — cell biology — Posted on 2019-11-18

1559 Novel anti-somatostatin receptor 2 antibody-drug conjugate for neuroendocrine cancer therapy

Si, Y.; Kim, S.; Guenter, R.; Ou, J.; Lu, Y.; Chen, K.; Zhang, J.; Whitt, J.; Carter, A. M.; Bibb, J. A.; Markert, J. M.; Jaskula-Sztul, R.; Zhou, L.; Chen, H.; Liu, X.

10.1101/688184 — bioengineering — Posted on 2019-11-18

1560 Exploring the Dynamics of Nonlinear Biochemical Systems using Control-Based Continuation

Gomes, B.; de Cesare, I.; Guarino, A.; di Bernardo, M.; Renson, L.; Marucci, L.

10.1101/695866 — systems biology — Posted on 2019-11-18

1561 Stress-Induced Expression is Enriched for Evolutionarily Young Genes in Diverse Budding Yeasts

Doughty, T. W.; Domenzain, I.; Millan-Oropeza, A.; Montini, N.; de Groot, P. A.; Pereira, R.; Nielsen, J.; Henry, C.; Daran, J.-M. G.; Siewers, V.; Morrissey, J. P.

10.1101/660274 — systems biology — Posted on 2019-11-18

1562 Normative age modelling of cortical thickness in autistic males

Bethlehem, R. A. I.; Seidlitz, J.; Romero-Garcia, R.; Dumas, G.; Lombardo, M. V.

10.1101/252593 — neuroscience — Posted on 2019-11-18

1563 Functional Organization of Mouse Primary Auditory Cortex in adult C57BL/6 and F1 (CBAxC57) mice

Bowen, Z.; Winkowski, D. E.; Kanold, P. O.

10.1101/843300 — neuroscience — Posted on 2019-11-18

1564 UNC-16/JIP3 negatively regulates actin dynamics dependent on DLK-1 and microtubule dynamics independent of DLK-1 in regenerating neurons

Kulkarni, S. S.; Sabharwal, V.; Sheoran, S.; Basu, A.; Matsumoto, K.; Hisamoto, N.; Ghosh-Roy, A.; Koushika, S. P.

10.1101/484683 — neuroscience — Posted on 2019-11-18

1565 Development of CRISPR-Cas13a-based antimicrobials capable of sequence-specific killing of target bacteria

Kiga, K.; Tan, X.-E.; Ibarra-Chavez, R.; Watanabe, S.; Aiba, Y.; Sato, Y.; Li, F.-Y.; Sasahara, T.; Cui, B.; Kawauchi, M.; Boonsiri, T.; Thitiananpakorn, K.; Taki, Y.; Azam, A. H.; Suzuki, M.; Penades, J. R.; Cui, L.

10.1101/808741 — microbiology — Posted on 2019-11-18

1566 Phosphate transporter PstSCAB of Campylobacter jejuni is essential for lactate-dependent growth and colonization in chickens

Sinha, R.; LeVeque, R. M.; Bowlin, M. Q.; Gray, M. J.; DiRita, V. J.

10.1101/843771 — microbiology — Posted on 2019-11-18

1567 Longer is not always better: Optimizing barcode length for large-scale species discovery and identification

Yeo, D.; Srivathsan, A.; Meier, R.

10.1101/594952 — evolutionary biology — Posted on 2019-11-18

1568 pyKNEEr: An image analysis workflow for open and reproducible research on femoral knee cartilage

Bonaretti, S.; Gold, G. E.; Beaupre, G. S.

10.1101/556423 — bioengineering — Posted on 2019-11-18

1569 Genome-wide profiling of druggable active tumor defense mechanisms to enhance cancer immunotherapy

Kishton, R. J.; Patel, S. J.; Vodnala, S. K.; Decker, A. K.; Patel, Y.; Sukumar, M.; Yamamoto, T. N.; Yu, Z.; Ji, M.; Henning, A. N.; Gurusamy, D.; Palmer, D. C.; Lo, W.; Pasetto, A.; Malekzadeh, P.; Deniger, D. C.; Wood, K. C.; Sanjana, N. E.; Restifo, N. P.

10.1101/843185 — immunology — Posted on 2019-11-18

1570 Predicting educational achievement from genomic measures and socioeconomic status

von Stumm, S.; Smith-Woolley, E.; Ayorech, Z.; McMillan, A.; Rimfeld, K.; Dale, P.; Plomin, R.

10.1101/538108 — genomics — Posted on 2019-11-18

1571 Functionalized mesoporous silica nanoparticles for innovative boron-neutron capture therapy of resistant cancers

Vares, G.; Jallet, V.; Matsumoto, Y.; Rentier, C.; Takayama, K.; Sasaki, T.; Hayashi, Y.; Kumada, H.; Sugawara, H.

10.1101/471128 — cancer biology — Posted on 2019-11-18

1572 Persistent neural entrainment in the human cortex is frequency selective

Pesnot Lerousseau, J.; Trebuchon, A.; Morillon, B.; Schon, D.

10.1101/834226 — neuroscience — Posted on 2019-11-17

1573 Different mechanisms for modulation of the initiation and steady-state of smooth pursuit eye movements

Behling, S.; Lisberger, S.

10.1101/846030 — neuroscience — Posted on 2019-11-17

1574 Structure of the human BBSome core complex in the open conformation

Klink, B. U.; Gatsogiannis, C.; Hofnagel, O.; Wittinghofer, A.; Raunser, S.

10.1101/845982 — molecular biology — Posted on 2019-11-17

1575 Single cell multiomic analysis of T cell exhaustion in vitro

Corselli, M.; Saksena, S.; Nakamoto, M.; Lomas, W.; Taylor, I.; Chattopadhyay, P. K.

10.1101/846048 — immunology — Posted on 2019-11-17

1576 Divergence in hormone signalling links local adaptation and hybrid failure

Wilkinson, M. J.; Roda, F.; Walter, G. M.; Nipper, R.; Walsh, J.; Allen, S.; Bernal, D. M.; North, H.; Beveridge, C.; Ortiz-Barrientos, D.

10.1101/845354 — evolutionary biology — Posted on 2019-11-17

1577 Alpha 6 Integrins Regulate the Expression of Laminin-511 and CXCR4 to Promote Endothelial Tubular Morphogenesis

Xu, H.; Pumiglia, K.; LaFlamme, S. E.

10.1101/846022 — cell biology — Posted on 2019-11-17

1578 Multi-Differentiation Potential Is Necessary For Optimal Tenogenesis Of Tendon Stem Cells

Rajpar, I.; Barrett, J. G.

10.1101/845974 — cell biology — Posted on 2019-11-17

1579 A nanobody-based fluorescent reporter reveals human α-synuclein in the cell cytosol

Gerdes, C.; Waal, N.; Offner, T.; Fornasiero, E. F.; Wender, N.; Verbarg, H.; Manzini, I.; Trenkwalder, C.; Mollenhauer, B.; Strohaeker, T.; Zweckstetter, M.; Becker, S.; Rizzoli, S. O.; Basmanav, B.; Opazo, F.

10.1101/846014 — neuroscience — Posted on 2019-11-17

1580 Development and Optimisation of a Defined High Cell Density Yeast Medium

Roberts, T. M.; Kaltenbach, H.-M.; Fabian, R.

10.1101/846006 — microbiology — Posted on 2019-11-17

1581 Alternative polyadenylation mediates genetic regulation of gene expression

Mittleman, B. E.; Pott, S.; Warland, S.; Zheng, T.; Laur, M.; Gilad, Y.; Li, Y.

10.1101/845966 — genomics — Posted on 2019-11-17

1582 Proteasome subunit PSMC3 variants cause neurosensory syndrome combining deafness and cataract due to proteotoxic stress

Kroell Hermi, A.; Ebstein, F.; Stoetzel, C.; Geoffroy, V.; Schaefer, E.; Scheidecker, S.; Bar, S.; Takamiya, M.; Kawakami, K.; Zieba, B. A.; Studer, F.; Pelletier, V.; Speeg-Schatz, C.; Laugel, V.; Lipsker, D.; Sandron, F.; McGinn, S.; Boland, A.; Deleuze, J.-F.; Kuhn, L.; Chicher, J.; Hammann, P.; Friant, S.; Etard, C.; Kruger, E.; Muller, J.; Strahle, U.; Dollfus, H.

10.1101/836015 — genetics — Posted on 2019-11-17

1583 Developmental transcriptomic analysis of the cave-dwelling crustacean, Asellus aquaticus

Gross, J. B.; Sun, D. A.; Carlson, B. M.; Brodo-Abo, S.; Protas, M.

10.1101/845990 — genetics — Posted on 2019-11-17

1584 A Network-based approach for Quantifying the Resilience and Vulnerability of HIV-1 Native Glycan Shield

Chakraborty, S.; Berndsen, Z. T.; Hengartner, N. W.; Korber, B. T.; Ward, A. B.; Gnanakaran, S.

10.1101/846071 — biophysics — Posted on 2019-11-17

1585 Quantum and Quantum-inspired Methods for de novo Discovery of Altered Cancer Pathways

Alghassi, H.; Dridi, R.; Robertson, A. G.; Tayur, S.

10.1101/845719 — bioinformatics — Posted on 2019-11-17

1586 The influence of 2-aminoethoxydiphenyl borate on the electrical activity of the rat heart under hypoxia/reoxygenation conditions

Kharkovskaya, E.; Osipov, G. V.; Mukhina, I. V.

10.1101/845909 — physiology — Posted on 2019-11-17

1587 Effects of advanced age upon astrocyte-specific responses to acute traumatic brain injury in mice

Early, A. N.; Gorman, A. A.; Van Eldik, L. J.; Bachstetter, A. D.; Morganti, J. M.

10.1101/845883 — neuroscience — Posted on 2019-11-17

1588 The immunogenic potential of recurrent cancer drug resistance mutations: an in silico study

Punta, M.; Jennings, V.; Melcher, A.; Lise, S.

10.1101/845784 — bioinformatics — Posted on 2019-11-17

1589 Neurovascular Uncoupling in Schizophrenia: A Bimodal Meta-Analysis of Brain Perfusion and Glucose Metabolism

Sukumar, N.; Anazodo, U.; Sabesan, P.; Palaniyappan, L.

10.1101/834002 — neuroscience — Posted on 2019-11-17

1590 ExploreASL: an image processing pipeline for multi-center ASL perfusion MRI studies

Mutsaerts, H. J.; Petr, J. H.; Groot, P. F.; van de Maele, P.; Ingala, S.; Robertson, A. D.; Vaclavu, L.; Groote, I.; Kuijf, H.; Zelaya, F.; O'Daly, O.; Hilal, S.; Wink, A. M.; Kant, I.; Caan, M.; Morgan, C.; de Bresser, J.; Lysvik, E.; Schrantee, A.; Bjornebekk, A.; Clement, P.; Shirzadi, Z.; Kuijer, J.; Anazodo, U.; Pajkrt, D.; Richard, E.; Bokkers, R.; Reneman, L.; Masellis, M.; Guenther, M.; MacIntosh, B.; Achten, E.; Chappell, M.; van Osch, M.; Golay, X.; Thomas, D.; de Vita, E.; Bjornerud, A.; Nederveen, A.; Hendrikse, J.; Asllani, I.; Barkhof, F.

10.1101/845842 — neuroscience — Posted on 2019-11-17

1591 Cultivar-specific transcriptome and pan-transcriptome reconstruction of tetraploid potato

Petek, M.; Zagorscak, M.; Ramsak, Z.; Sanders, S.; Tseng, E.; Zouine, M.; Coll, A.; Gruden, K.

10.1101/845818 — plant biology — Posted on 2019-11-17

1592 Mutation of kvrA causes OmpK35/36 porin downregulation and reduced meropenem/vaborbactam susceptibility in KPC-producing Klebsiella pneumoniae.

Dulyayangkul, P.; Wan Nur Ismah, W. A. K.; Douglas, E. J.; Avison, M. B.

10.1101/845925 — microbiology — Posted on 2019-11-17

1593 RNA sequencing and lipidomic analysis of alveolar macrophages from normal and CD44 deficient mice

Dong, Y.; Arif, A. A.; Guo, J.; Ha, Z.; Lee-Sayer, S. S. M.; Poon, G. F. T.; Dosanjh, M.; Roskelley, C. D.; Huan, T.; Johnson, P.

10.1101/845644 — immunology — Posted on 2019-11-17

1594 S1P-S1PR1 activity controls VEGF-A signaling during lymphatic vessel development

Golding-Ochsenbein, A. M.; Vidal, S.; Wilmering Wetter, B.; Guibourdenche, C.; Beerli, C.; Chang, L.; Leonhard, S.; Holway, N.; Seuwen, K.; Jurisic, G.

10.1101/845396 — developmental biology — Posted on 2019-11-17

1595 Genetic buffering and potentiation in metabolism

Poyatos, J. F.

10.1101/845792 — systems biology — Posted on 2019-11-17

1596 Pupillary correlates of computations underlying human responder behaviour in the Ultimatum Game

Murphy, D. A.; Harmer, C. J.; Browning, M.; Pulcu, E.

10.1101/826529 — neuroscience — Posted on 2019-11-17

1597 Motor learning and transfer: from feedback to feedforward control

Maeda, R. S.; Gribble, P. L.; Pruszynski, J. A.

10.1101/845933 — neuroscience — Posted on 2019-11-17

1598 Endocrine autoimmune disease as a fragility of immune-surveillance against hypersecreting mutants

Korem Kohanim, Y.; Tendler, A.; Mayo, A.; Friedman, N.; Alon, U.

10.1101/845750 — immunology — Posted on 2019-11-17

1599 Arginine depletion through ADI-PEG20 to treat argininosuccinate synthase deficient ovarian cancer, including small cell carcinoma of the ovary, hypercalcemic type

Ji, J. X.; Cochrane, D. R.; Tessier-Cloutier, B.; Chen, S.; Ho, G.; Pathak, K. V.; Alcazar, I.; Farnell, D.; Leung, S.; Cheng, A.; Chow, C.; Colborne, S.; Luca Negri, G.; Kommoss, F.; Karnezis, A. N.; Morin, G. B.; McAlpine, J. N.; Gilks, C. B.; Weissman, B. E.; Trent, J. M.; Hoang, L. N.; Pirrotte, P.; Wang, Y.; Huntsman, D. G.

10.1101/845586 — cancer biology — Posted on 2019-11-17

1600 Molecular epidemiology of cefotaxime-resistant Escherichia coli from dairy farms in South West England identifies a dominant plasmid encoding CTX-M-32

Findlay, J.; Schubert, H.; Morley, K.; Mounsey, O.; Gould, V. C.; Puddy, E. F.; Newbold, N.; Reyher, K. K.; Cogan, T. A.; Avison, M. B.

10.1101/845917 — microbiology — Posted on 2019-11-17

1601 RsQTL: correlation of expressed SNVs with splicing using RNA-sequencing data

Sein, J.; Spurr, L.; Bousounis, P.; Alomran, N.; N M, P.; Liu, H.; Bernot, J.; Ibeawuchi, H.; Stremtan, D.; Horvath, A.

10.1101/840504 — bioinformatics — Posted on 2019-11-17

1602 Automating parameter selection to avoid implausible biological pathway models

Magnano, C. S.; Gitter, A.

10.1101/845834 — bioinformatics — Posted on 2019-11-17

1603 Socially dominant, aggressive males are poor influencers of group-consensus in a social fish

Rodriguez-Santiago, M.; Nuehrenberg, P.; Derry, J.; Deussen, O.; Garrison, L. K.; Garza, S. F.; Francisco, F.; Hofmann, H.; Jordan, A. L.

10.1101/845628 — animal behavior and cognition — Posted on 2019-11-17

1604 Comparative transcriptomics of a monocotyledonous geophyte reveals shared molecular mechanisms of underground storage organ formation.

Tribble, C. M.; Martinez-Gomez, J.; Alzate-Guarin, F.; Rothfels, C. J.; Specht, C. D.

10.1101/845602 — plant biology — Posted on 2019-11-17

1605 GLP-1R is downregulated in beta cells of NOD mice and T1D patients

Recino, A.; Barkan, K.; Schmidt-Christensen, A.; Nilsson, J.; Holmes, N.; Howie, D.; Holmberg, D.; Larsson, P.; Flodstrom-Tullberg, M.; Laraia, L.; Spring, D. R.; Hecksher-Sorensen, J.; Cooke, A.; Ladds, G.; Wallberg, M.

10.1101/845776 — physiology — Posted on 2019-11-17

1606 Oxytocin Neurons Enable Social Transmission of Maternal Behavior

Carcea, I.; Lopez Caraballo, N.; Marlin, B.; Ooyama, R.; Mendoza Navarro, J.; Opendak, M.; Diaz, V.; Schuster, L.; Alvarado Torres, M.; Lethin, H.; Ramos, D.; Minder, J.; Mendoza, S.; Hidema, S.; Falkner, A.; Lin, D.; Mar, A.; Wadghiri, Y.; Nishimori, K.; Kikusui, T.; Mogi, K.; Sullivan, R.; Froemke, R.

10.1101/845495 — neuroscience — Posted on 2019-11-17

1607 A comparative and functional genomics analysis of the genus Romboutsia provides insight into adaptation to an intestinal lifestyle

Gerrritsen, J.; Hornung, B.; Ritari, J.; Paulin, L.; Rijkers, G. T.; Schaap, P. J.; de Vos, W. M.; Smidt, H.

10.1101/845511 — microbiology — Posted on 2019-11-17

1608 Transposon-mediated telomere destabilization: a driver of genome evolution in the blast fungus

Rahnama, M.; Novikova, O.; Starnes, J. H.; Chen, L.; Zhang, S.; Farman, M. L.

10.1101/845669 — genomics — Posted on 2019-11-17

1609 Robust lysosomal rewiring in Mtb infected macrophages mediated by Mtb lipids restricts the intracellular bacterial survival

Sachdeva, K.; Goel, M.; Sudhakar, M.; Mehta, M.; Raju, R.; Raman, K.; Singh, A.; Sundaramurthy, V.

10.1101/845800 — cell biology — Posted on 2019-11-17

1610 Evaluation of Connectivity Map shows limited reproducibility in drug repositioning

Lim, N.; Pavlidis, P.

10.1101/845693 — bioinformatics — Posted on 2019-11-17

1611 Full-coverage native RNA sequencing of HIV-1 viruses

Gener, A. R.; Kimata, J. T.

10.1101/845610 — genomics — Posted on 2019-11-17

1612 Mosaic metabolic ageing: Basal and standard metabolic rate age in opposite directions and independent of lifespan in a passerine

Briga, M.; Verhulst, S.

10.1101/844266 — ecology — Posted on 2019-11-17

1613 Using MAP-Elites to Optimize Self-Assembling Behaviors in a Swarm of Bio-micro-robots

Cazenille, L.; Bredeche, N.; Aubert-Kato, N.

10.1101/845594 — bioengineering — Posted on 2019-11-17

1614 Emergence of opposite neurons in a decentralized firing-rate model of multisensory integration

Niu, X.; Chau, H. Y.; Lee, T. S.; Zhang, W.-H.

10.1101/845743 — neuroscience — Posted on 2019-11-17

1615 Enzymatic degradation of RNA causes widespread protein aggregation in cell and tissue lysates

Aarum, J.; Cabrera, C.; Jones, T.; Rajendran, S.; Adiutori, R.; Giovannoni, G.; Barnes, M.; Malaspina, A.; Sheer, D.

10.1101/841577 — molecular biology — Posted on 2019-11-17

1616 A new Brachiaria reference genome and its application in identifying genes associated with natural variation in tolerance to acidic soil conditions among Brachiaria grasses

Worthington, M.; Perez, J. G.; Mussurova, S.; Silva-Cordoba, A.; Castiblanco, V.; Jones, C.; Fernandez-Fuentes, N.; Skot, L.; Dyer, S.; Tohme, J.; Di Palma, F.; Arango, J.; Armstead, I.; De Vega, J. J.

10.1101/843870 — genomics — Posted on 2019-11-17

1617 Global transcriptome analysis reveals circadian control of splicing events in Arabidopsis thaliana

Romanowski, A.; Schlaen, R. G.; Perez-Santangelo, S.; Mancini, E.; Yanovsky, M. J.

10.1101/845560 — plant biology — Posted on 2019-11-17

1618 Photoproximity profiling of protein-protein interactions in cells

McCutcheon, D. C.; Lee, G.; Carlos, A. J.; Montgomery, J. E.; Moellering, R. E.

10.1101/833384 — biochemistry — Posted on 2019-11-17

1619 A Framework of All Discovered Immunological Pathways and Their Roles for Four Specific Types of Pathogens and Hypersensitivities

Hu, W.

10.1101/006965 — immunology — Posted on 2019-11-17

1620 On the origins of vulnerability to opioid addiction

Levis, S. C.; Bentzley, B. S.; Molet, J.; Bolton, J. L.; Perrone, C. R.; Baram, T. Z.; Mahler, S. V.

10.1101/716522 — neuroscience — Posted on 2019-11-17

1621 Transcriptomic and Cellular Decoding of Regional Brain Vulnerability to Neurodevelopmental Disorders

Seidlitz, J.; Nadig, A.; Liu, S.; Bethlehem, R. A. I.; Vertes, P. E.; Morgan, S. E.; Vasa, F.; Romero-Garcia, R.; Lalonde, F. M.; Clasen, L. S.; Blumenthal, J. D.; Paquola, C.; Bernhardt, B.; Wagstyl, K.; Polioudakis, D.; de la Torre-Ubieta, L.; Geschwind, D. H.; Han, J. C.; Lee, N. R.; Murphy, D. G.; Bullmore, E. T.; Raznahan, A.

10.1101/573279 — neuroscience — Posted on 2019-11-17

1622 Neuro-Current Response Functions: A Unified Approach to MEG Source Analysis under the Continuous Stimuli Paradigm

Das, P.; Brodbeck, C.; Simon, J. Z.; Babadi, B.

10.1101/761999 — neuroscience — Posted on 2019-11-17

1623 VelA and LaeA are key regulators of the Epichloë festucae transcriptomic response during symbiosis with perennial ryegrass

Rahnama, M.; Maclean, P.; Fleetwood, D.; Johnson, R.

10.1101/835249 — molecular biology — Posted on 2019-11-17

1624 Aquila: diploid personal genome assembly and comprehensive variant detection based on linked reads

Zhou, X.; Zhang, L.; Weng, Z.; Dill, D. L.; Sidow, A.

10.1101/660605 — genomics — Posted on 2019-11-17

1625 Recently formed context fear memories can be retrieved without the hippocampus

Krueger, J. N.; Wilmot, J. H.; Teratani-Ota, Y.; Puhger, K. R.; Nemes, S. E.; Lafreniere, M.; Wiltgen, B. J.

10.1101/843342 — neuroscience — Posted on 2019-11-17

1626 The rapid regenerative response of a model sea anemone species Exaiptasia pallida is characterised by tissue plasticity and highly coordinated cell communication

van der Burg, C. A.; Pavasovic, A.; Gilding, E. K.; Pelzer, E. S.; Surm, J. M.; Smith, H. L.; Walsh, T. P.; Prentis, P. J.

10.1101/644732 — evolutionary biology — Posted on 2019-11-17

1627 Using indication embeddings to represent patient health for drug safety studies

Melamed, R. D.

10.1101/737049 — bioinformatics — Posted on 2019-11-17

1628 Performance Limitations in Sensorimotor Control: Tradeoffs between Neural Computation and Accuracy in Tracking Fast Movements

Saxena, S.; Sarma, S. V.; Dahleh, M.

10.1101/464230 — neuroscience — Posted on 2019-11-17

1629 Chronic Repeated Predatory Stress Induces Resistance to Quinine Adulteration of Ethanol in Male Mice

Shaw, G. A.; Bent, M. A. M.; Council, K. R.; Pais, A. C.; Amstadter, A.; Wolstenholme, J. T.; Miles, M. F.; Neigh, G.

10.1101/677146 — neuroscience — Posted on 2019-11-17

1630 Assessment of phylo-functional coherence along the bacterial phylogeny and taxonomy

Parras-Molto, M.; Aguirre de Carcer, D.

10.1101/795914 — microbiology — Posted on 2019-11-17

1631 Reciprocity and behavioral heterogeneity govern the stability of social networks

Dakin, R.; Ryder, T. B.

10.1101/694166 — animal behavior and cognition — Posted on 2019-11-17

1632 Multi-sensory integration in the mouse cortical connectome using a network diffusion model

Shadi, K.; Dyer, E.; Dovrolis, C.

10.1101/832485 — neuroscience — Posted on 2019-11-17

1633 Structural basis of peptidoglycan endopeptidase regulation

Shin, J.-H.; Sulpizio, A.; Kelley, A.; Alvarez, L.; Murphy, S.; Cava, F.; Mao, Y.; Saper, M. A.; Doerr, T.

10.1101/843615 — microbiology — Posted on 2019-11-17

1634 Characterization of Mollivirus kamchatka, the first modern representative of the proposed Molliviridae family of giant viruses

Christo-Foroux, E.; Alempic, J.-M.; Lartigue, A.; Santini, S.; Labadie, K.; Legendre, M.; Abergel, C.; Claverie, J.-M.

10.1101/844274 — microbiology — Posted on 2019-11-17

1635 Linkage Disequilibrium and Heterozygosity Modulate the Genetic Architecture of Human Complex Phenotypes: Evidence of Natural Selection from GWAS Summary Statistics

Holland, D.; Frei, O.; Desikan, R.; Fan, C. C.; Shadrin, A.; Smeland, O.; Andreassen, O. A.; Dale, A.

10.1101/705285 — genomics — Posted on 2019-11-17

1636 Evolutionary branching of function-valued traits under constraints

Ito, H. C.

10.1101/841064 — evolutionary biology — Posted on 2019-11-17

1637 ΔSCOPE: A new method to quantify 3D biological structures and identify differences in zebrafish forebrain development

Schwartz, M. S.; Schnabl, J. M.; Litz, M.; Baumer, B. S.; Barresi, M. J.

10.1101/715698 — developmental biology — Posted on 2019-11-17

1638 Paradoxical changes in brain reward status during opioid self-administration in a novel test of the negative reinforcement hypothesis

Nguyen, J.; Grant, Y.; Taffe, M. A.

10.1101/460048 — neuroscience — Posted on 2019-11-17

1639 Bacterial contribution to genesis of the novel germ line determinant oskar

Blondel, L.; Jones, T. E. M.; Extavour, C. G.

10.1101/453514 — evolutionary biology — Posted on 2019-11-17

1640 The mechanism of Hsp90-induced oligomerization of Tau

Weickert, S.; Wawrzyniuk, M.; John, L.; Rüdiger, S. G. D.; Drescher, M.

10.1101/614289 — biophysics — Posted on 2019-11-17

1641 Energy landscapes reveal agonist control of GPCR activation via microswitches

Fleetwood, O.; Matricon, P.; Carlsson, J.; Delemotte, L.

10.1101/627026 — biophysics — Posted on 2019-11-17

1642 Endothelial sphingosine-1-phosphate receptor 1 deficiency exacerbates brain injury and blood brain barrier dysfunction upon subarachnoid hemorrhage in mice.

Ito, A.; Uchida, H.; Kim, G. S.; Faraco, G.; Proia, R.; Niizuma, K.; Tominaga, T.; Anrather, J.; Iadecola, C.; Kluk, M.; Sanchez, T.

10.1101/357236 — neuroscience — Posted on 2019-11-17

1643 Comprehensive analysis of horizontal gene transfer among multidrug-resistant bacterial pathogens in a single hospital

Evans, D. R.; Griffith, M. P.; Mustapha, M. M.; Marsh, J. W.; Sundermann, A. J.; Cooper, V. S.; Harrison, L. H.; Van Tyne, D.

10.1101/844449 — microbiology — Posted on 2019-11-16

1644 Structure based analysis of protein cluster size for super-resolution microscopy in the nervous system

Wong, C.-E.; Lee, C.-C.; Tsai, K.-J.

10.1101/845107 — neuroscience — Posted on 2019-11-16

1645 Population-specific and transethnic genome-wide analyses reveal distinct and shared genetic risks of coronary artery disease

Koyama, S.; Ito, K.; Terao, C.; Akiyama, M.; Horikoshi, M.; Momozawa, Y.; Matsunaga, H.; Ieki, H.; Ozaki, K.; Onouchi, Y.; Takahashi, A.; Nomura, S.; Morita, H.; Akazawa, H.; Kim, C.; Seo, J.-s.; Higasa, K.; Iwasaki, M.; Yamaji, T.; Sawada, N.; Tsugane, S.; Koyama, T.; Ikezaki, H.; Takashima, N.; Tanaka, K.; Arisawa, K.; Kuriki, K.; Naito, M.; Wakai, K.; Suna, S.; Sakata, Y.; Sato, H.; Hori, M.; Sakata, Y.; Matsuda, K.; Murakami, Y.; Aburatani, H.; Kubo, M.; Matsuda, F.; Kamatani, Y.; Komuro, I.

10.1101/827550 — genetics — Posted on 2019-11-16

1646 Molecular Evolution of the Sex Peptide Network in Drosophila

McGeary, M. K.; Findlay, G. D.

10.1101/833939 — evolutionary biology — Posted on 2019-11-16

1647 Spectrum of protein localization in proteomes captures evolutionary relation between species

Marot-Lassauzaie, V.; Goldberg, T.; Rost, B.

10.1101/845362 — bioinformatics — Posted on 2019-11-16

1648 Adult Muscle Stem Cell Self-Renewal Induced by Endurance Exercise is Mediated by Inhibition of Mitochondrial Oxygen Consumption

Kowaltowski, A. J.; Abreu, P.

10.1101/845438 — biochemistry — Posted on 2019-11-16

1649 Unsupervised domain adaptation for the automated segmentation of neuroanatomy in MRI: a deep learning approach

Novosad, P.; Fonov, V.; Collins, D. L.

10.1101/845537 — bioinformatics — Posted on 2019-11-16

1650 Preparing for the 3D data deluge: real time structural search at the scale of the PDB and beyond

Guzenko, D.; Burley, S. K.; Duarte, J. M.

10.1101/845123 — bioinformatics — Posted on 2019-11-16

1651 Elucidating the regulation of glucose tolerance through the interaction between the reaction product and active site pocket residues of a β-glucosidase from Halothermothrix orenii

Sinha, S. K.; Das, S.; Konar, S.; Ghorai, P. K.; Das, R.; Datta, S.

10.1101/844506 — biochemistry — Posted on 2019-11-16

1652 Improvement of cryo-EM maps by density modification

Terwilliger, T. C.; Ludtke, S. J.; Read, R. J.; Adams, P. D.; Afonine, P. V.

10.1101/845032 — biochemistry — Posted on 2019-11-16

1653 An Autonomous Molecular Bioluminescent Reporter (AMBER) for voltage imaging in freely moving animals

Srinivasan, P.; Griffin, N. M.; Joshi, P.; Thakur, D. P.; Nguyen-Le, A.; McCotter, S.; Jain, A.; Saeidi, M.; Kulkarni, P.; Eisdorfer, J.; Rothman, J.; Montell, C.; Theogarajan, L. S.

10.1101/845198 — neuroscience — Posted on 2019-11-16

1654 How past exposure to predation affects personality and behavioural plasticity?

Tariel, J.; Plenet, S.; Luquet, E.

10.1101/844258 — animal behavior and cognition — Posted on 2019-11-16

1655 Optogenetic lac operon to control chemical and protein production in Escherichia coli with light

Lalwani, M. A.; Ip, S. S.; Carrasco-Lopez, C.; Zhao, E. M.; Kawabe, H.; Avalos, J. L.

10.1101/845453 — synthetic biology — Posted on 2019-11-16

1656 Neural dysfunction correlates with heat coma and CTmax in Drosophila but does not set the boundaries for heat stress survival

Jorgensen, L. B.; Robertson, R. M.; Overgaard, J.

10.1101/844316 — physiology — Posted on 2019-11-16

1657 Evaluation of Dose Fractionated Polymyxin B on Acute Kidney Injury: A Translational In Vitro Model

Liu, J.; Pais, G. M.; Avedissian, S. N.; Gilchrist, A.; Lee, A.; Rhodes, N. J.; Hauser, A. R.; Scheetz, M. H.

10.1101/845024 — pharmacology and toxicology — Posted on 2019-11-16

1658 Muscle synergies are associated with intermuscular coherence in an isometric upper limb task.

Ortega-Auriol, P.; Byblow, W. D.; McMorland, A. J.

10.1101/843797 — neuroscience — Posted on 2019-11-16

1659 Functional connectome analyses reveal a highly optimized human olfactory network

Arnold, T. C.; You, Y.; Ding, M.; Zuo, X.-N.; de Araujo, I. E.; Li, W.

10.1101/843532 — neuroscience — Posted on 2019-11-16

1660 Functional Connectivity Evoked by Orofacial Tactile Perception of Velocity

Wang, Y.; Sibaii, F.; Custead, R.; Oh, H.; Barlow, S. M.

10.1101/843441 — neuroscience — Posted on 2019-11-16

1661 Diffusion Histology Imaging Detects and Classifies Glioblastoma Pathology Missed by Conventional Magnetic Resonance Imaging

Ye, Z.; Price, R. L.; Liu, X.; Lin, J.; Yang, Q.; Sun, P.; Wu, A. T.; Wang, L.; Han, R.; Song, C.; Yang, R.; Gary, S. E.; Mao, D. D.; Wallendorf, M.; Campian, J. L.; Li, J.-S.; Dahiya, S.; Kim, A. H.; Song, S.-K.

10.1101/843367 — neuroscience — Posted on 2019-11-16

1662 ESI mutagenesis: A one-step method for introducing point mutations into bacterial artificial chromosome transgenes

Rondelet, A.; Pozniakovsky, A.; Leuschner, M.; Poser, I.; Ssykor, A.; Berlitz, J.; Schmidt, N.; Hyman, A. A.; Bird, A. W.

10.1101/844282 — molecular biology — Posted on 2019-11-16

1663 Biodiversity-based innovations fortify agricultural growth in Asia-Pacific economies

Wyckhuys, K.; Lu, Y.; Zhou, W.; Cock, M. J.; Furlong, M. J.

10.1101/845214 — ecology — Posted on 2019-11-16

1664 SparK: A Publication-quality NGS Visualization Tool

Kurtenbach, S.; Harbour, J. W.

10.1101/845529 — bioinformatics — Posted on 2019-11-16

1665 Effects of technical noise on bulk RNA-seq differential gene expression inference

Sheerin, D.; O'Connor, D.; Pollard, A. J.; Mohorianu, I.

10.1101/843789 — bioinformatics — Posted on 2019-11-16

1666 Expression, Purification, and Functional Reconstitution of 19F-labeled Cytochrome b5 in Peptide Nanodiscs for NMR Studies

Bai, J.; Wang, J.; Ravula, T. R.; Im, S.-C.; Anantharamaiah, G. M.; Waskell, L.; Ramamoorthy, A.

10.1101/844381 — biochemistry — Posted on 2019-11-16

1667 Predictive regression modeling with MEG/EEG: from source power to signals and cognitive states

Sabbagh, D.; Ablin, P.; Varoquaux, G.; Gramfort, A.; Engemann, D. A.

10.1101/845016 — neuroscience — Posted on 2019-11-16

1668 CosR is a repressor of compatible solute biosynthesis and transporter systems

Gregory, G.; Morreale, D.; Boyd, E. F.

10.1101/845297 — microbiology — Posted on 2019-11-16

1669 A scalable random walk with restart on heterogeneous networks with Apache Spark for ranking disease-causing genes using type-2 fuzzy data fusion

Joodaki, M.; Ghadiri, N.; Maleki, Z.; Lotfi Shahreza, M.

10.1101/844159 — bioinformatics — Posted on 2019-11-16

1670 Fungal effector Jsi1 hijacks plant JA/ET signaling through Topless

Darino, M. A.; Marques, J.; Chia, K.-S.; Aleksza, D.; Soto, L. M.; Uhse, S.; Borg, M.; Betz, R.; Bindics, J.; zienkiewicz, k.; Feussner, I.; Petit-Houdenot, Y.; Djamei, A.

10.1101/844365 — plant biology — Posted on 2019-11-16

1671 A precision medicine approach uncovers a unique signature of neutrophils in patients with brushite kidney stones

Makki, M. S.; Winfree, S.; Lingeman, J. E.; Witzmann, F. A.; Worcester, E. M.; Krambeck, A.; Coe, F.; Evan, A. P.; Bledsoe, S.; Bergsland, K.; Khochare, S.; Barwinska, D.; Willliams, J. C.; El-Achkar, T. M.

10.1101/844142 — pathology — Posted on 2019-11-16

1672 Proteomic analysis of Caenorhabditis elegans against S. Typhi toxic proteins

Balamurugan, K.; Mir, D. A.

10.1101/845370 — pathology — Posted on 2019-11-16

1673 Manipulating synthetic optogenetic odors reveals the coding logic of olfactory perception

Chong, E.; Moroni, M.; Wilson, C.; Shoham, S.; Panzeri, S.; Rinberg, D.

10.1101/841916 — neuroscience — Posted on 2019-11-16

1674 Exhaustive reconstruction of the CRISPR locus in Mycobacterium tuberculosis complex using short reads

Guyeux, C.; Sola, C.; Refregier, G.

10.1101/844746 — genomics — Posted on 2019-11-16

1675 The Drosophila melanogaster ortholog of RFWD3 functions independently of RAD51 during DNA repair

Carvajal Garcia, J.; Gales, E. R.; Ramsden, D.; Sekelsky, J.

10.1101/844779 — genetics — Posted on 2019-11-16

1676 The independent and combined influence of schizophrenia polygenic risk score and heavy cannabis use on risk for psychotic disorder: A case-control analysis from the EUGEI study.

Di Forti, M.; Wu-Choi, B.; Quattrone, D.; Richards, A. L.; Freeman, T. P.; Tripoli, G.; Gayer-Anderson, C.; Rodriguez, V.; Jongsma, H.; Ferraro, L.; La Cascia, C.; Tosato, S.; Tarricone, I.; Berardi, D.; Szoke, A.; Arango, C.; Bobes, J.; Sanjuan, J.; Santos, J. L.; Arrojo, M.; Velthorst, E.; BERNARDO, M.; Del Ben, C. M.; Selten, J.-P.; Jones, P. B.; Kirkbride, J. B.; Rutten, B. N.; de Haan, L.; van os, J.; Lynskey, M.; Morgan, C.; Vassos, E.; O'Donovan, M.; Lewis, C.; Sham, P. C.; Murray, R. M.; EU-GEI WP2 Group,

10.1101/844803 — genetics — Posted on 2019-11-16

1677 Effects of surfaces and macromolecular crowding on bimolecular reaction rates

Andrews, S. S.

10.1101/844753 — biophysics — Posted on 2019-11-16

1678 Entropy-Based Analysis of Vertebrate Sperm Protamine Sequences: Evidence of Dityrosine and Cysteine-Tyrosine Cross-Linking in Sperm Protamines

Powell, C. D.; Kirchhoff, D. C.; DeRouchey, J. E.; Moseley, H. N. B.

10.1101/845180 — bioinformatics — Posted on 2019-11-16

1679 hTFtarget: a comprehensive database for regulations of human transcription factors and their targets

Zhang, Q.

10.1101/843656 — bioinformatics — Posted on 2019-11-16

1680 Precise Spatial Memory in Local Random Networks

Natale, J. L.; Hentschel, H. G. E.; Nemenman, I.

10.1101/845156 — neuroscience — Posted on 2019-11-16

1681 Rapid Recalibration of Peri-Personal Space; Psychophysical, Electrophysiological, and Neural Network Modeling Evidence

Noel, J.-P.; Bertoni, T.; Terrebonne, E.; Pellencin, E.; Herbelin, B.; Cascio, C.; Blanke, O.; Magosso, E.; Wallace, M.; Serino, A.

10.1101/842690 — neuroscience — Posted on 2019-11-16

1682 Advantages of acute brain slices prepared at physiological temperature in characterization of synaptic functions

Eguchi, K.; Velicky, P.; Hollergschwandtner, E.; Itakura, M.; Fukazawa, Y.; Danzl, J. G.; Shigemoto, R.

10.1101/845461 — neuroscience — Posted on 2019-11-16

1683 Effective downregulation of BCR-ABL tumorigenicity by RNA targeted CRISPR-Cas13a

Singh, A.; Bhatia, P.

10.1101/840900 — molecular biology — Posted on 2019-11-16

1684 Pseudorabies Virus Infection Accelerates Degradation of the Kinesin-3 Motor KIF1A

Huang, H.; Koyuncu, O. O.; Enquist, L. W.

10.1101/845289 — microbiology — Posted on 2019-11-16

1685 Optimizing the Timing and Composition of Therapeutic Phage Cocktails: A Control-theoretic Approach

Li, G.; Leung, C. Y.; Wardi, Y.; Debarbieux, L.; Weitz, J.

10.1101/845172 — microbiology — Posted on 2019-11-16

1686 ATAC-seq identifies thousands of extrachromosomal circular DNA in cancers and cell lines

Kumar, P.; Kiran, S.; Saha, S.; Su, Z.; Paulsen, T.; Chatrath, A.; Dutta, A.

10.1101/845040 — genomics — Posted on 2019-11-16

1687 Diachronic monitoring of snow leopards at Sarychat-Ertash State Reserve (Kyrgyzstan) through scat genotyping: a pilot study

Rode, J.; Pelletier, A.; Fumey, J.; Rode, S.; Cabanat, A.-L.; Ouvrard, A.; Chaix, B.; White, B.; Harnden, M.; Thi Xuan, N.; Vereshagin, A.; Casane, D.

10.1101/835025 — genetics — Posted on 2019-11-16

1688 Evolutionary repair: changes in multiple functional modules allow meiotic cohesin to support mitosis

Hsieh, Y.-Y. P.; Makrantoni, V.; Robertson, D.; Marston, A. L.; Murray, A. W.

10.1101/844423 — evolutionary biology — Posted on 2019-11-16

1689 Gene Expression of Functionally-Related Genes Coevolves Across Fungal Species: Detecting Coevolution of Gene Expression Using Phylogenetic Comparative Methods

Cope, A. L.; O'Meara, B. C.; Gilchrist, M. A.

10.1101/844472 — evolutionary biology — Posted on 2019-11-16

1690 Transversal otolithic membrane deflections evoked by the linear accelerations

Goussev, V.

10.1101/844977 — biophysics — Posted on 2019-11-16

1691 Kinetic Proofreading and the Limits of Thermodynamic Uncertainty

Pineros, W. D.; Tlusty, T.

10.1101/845164 — biophysics — Posted on 2019-11-16

1692 A Mechanism for Beam-Induced Motion in Cryo-Electron Microscopy

Thorne, R. E.

10.1101/845552 — biophysics — Posted on 2019-11-16

1693 Biophysical characterization of DNA origami nanostructures reveals inaccessibility to intercalation binding sites

Miller, H.; Contera, S. A.; Wollman, A. J. M.; Hirst, A.; Dunn, K.; Schroeter, S.; O'Connell, D.; Leake, M. C.

10.1101/845420 — biophysics — Posted on 2019-11-16

1694 Graph-Theoretical Formulation of the Generalized Epitope-based Vaccine Design Problem

Dorigatti, E.; Schubert, B.

10.1101/845503 — bioinformatics — Posted on 2019-11-16

1695 Unmasking functional redundancy of deubiquitylases enables specificity profiling and discovery of novel proteasome substrates

Rossio, V.; Paulo, J.; Chick, J.; Brasher, B.; Gygi, S.; King, R. w.

10.1101/844811 — biochemistry — Posted on 2019-11-16

1696 A deep learning-based model of normal histology

Sing, T.; Hoefling, H.; Hossain, I.; Boisclair, J.; Doelemeyer, A.; Flandre, T.; Piaia, A.; Romanet, V.; Santarossa, G.; Saravanan, C.; Sutter, E.; Turner, O.; Wuersch, K.; Moulin, P.

10.1101/838417 — pathology — Posted on 2019-11-16

1697 A representational asymmetry for composition in the human left-middle temporal gyrus

Frankland, S. M.; Greene, J. D.

10.1101/844183 — neuroscience — Posted on 2019-11-16

1698 Time-dependent processing of correlated signals between visual cortical areas improves neuronal population encoding in a sensory discrimination task

Smith, J. E. T.; Parker, A. J.

10.1101/844514 — neuroscience — Posted on 2019-11-16

1699 Transcriptional reprogramming of distinct peripheral sensory neuron subtypes after axonal injury

Renthal, W.; Tochitsky, I.; Yang, L.; Cheng, Y.-C.; Li, E.; Kawaguchi, R.; Geschwind, D.; Woolf, C. J.

10.1101/838854 — neuroscience — Posted on 2019-11-16

1700 Nova proteins direct synaptic integration of somatostatin interneurons through activity-dependent alternative splicing

Fishell, G.; Wamsley, B.; Ibrahim, L. A.; Yusuf, N.; Fisher, E.; Jaglin, X. H.; Xu, Q.; Gao, L.; Khodadadi-Jamayran, A.; Favuzzi, E.; Yuan, Y.; Darnell, R.; Dimidschstein, J.

10.1101/845230 — neuroscience — Posted on 2019-11-16

1701 Nuclear GAPDH signaling mediates pathological cardiac hypertrophy

Zhang, M.; Kariya, T.; Numata, G.; Ramos, A.; Sasaki, H.; Iwakiri, M.; Sasaki, M.; Koitabashi, N.; Zhu, G.; Tsujimura, T.; Lee, D.-i.; Tristan, C.; Shahani, N.; Tsuchiya, Y.; Jaaro-Peled, H.; Slusher, B. S.; Kass, D.; Taguchi, K.; Horiguchi, Y.; Saitoh, T.; Ishizuka, K.; Sawa, A.; Takimoto, E.

10.1101/844902 — molecular biology — Posted on 2019-11-16

1702 Surface Sensing Stimulates Cellular Differentiation in Caulobacter crescentus

Snyder, R. A.; Ellison, C. K.; Severin, G. B.; Waters, C. M.; Brun, Y. V.

10.1101/844324 — microbiology — Posted on 2019-11-16

1703 Beyond taxonomic identification: integration of ecological responses to a soil bacterial 16S rRNA gene database.

Jones, B. A.; Goodall, T.; George, P.; Gweon, H. s.; Puissant, J.; Read, D.; Emmett, B.; Robinson, D.; Jones, D.; Griffiths, R.

10.1101/843847 — microbiology — Posted on 2019-11-16

1704 Retrieval of the Complete Coding Sequence of the UK-Endemic Tatenale Orthohantavirus Reveals Extensive Strain Variation and Supports its Classification as a Novel Species

Chappell, J. G.; Tsoleridis, T.; Onianwa, O.; Dobbs, P.; Drake, G.; Ashpole, I.; Edema, W.; Kumi-Ansah, F.; Bennett, M.; Tarlinton, R. E.; Ball, J. K.; McClure, C. P.

10.1101/844340 — microbiology — Posted on 2019-11-16

1705 Metabolic switching of Mycobacterium tuberculosis during hypoxia is controlled by the virulence regulator PhoP

Singh, P. R.; Anil Kumar, V.; Sarkar, D.

10.1101/845271 — microbiology — Posted on 2019-11-16

1706 The Legionella pneumophila metaeffector Lpg2505 (SusF) regulates SidI-mediated translation inhibition and GDP-dependent glycosyltransferase activity.

Joseph, A. M.; Pohl, A. E.; Ball, T. J.; Abram, T. G.; Johnson, D. K.; Geisbrecht, B. V.; Shames, S. R.

10.1101/845313 — microbiology — Posted on 2019-11-16

1707 Enhancers predominantly regulate gene expression in vivo via transcription initiation.

Larke, M. S. C.; Nojima, T.; Telenius, J. M.; Sharpe, J. A.; Stanley, J. A.; Butler, S.; Beagrie, R. A.; Downes, D. J.; Schwessinger, R.; Oudelaar, M.; Truch, J.; Crompton, B.; Bender, M. A.; Proudfoot, N. J.; Higgs, D. R.; Hughes, J. R.

10.1101/844191 — genomics — Posted on 2019-11-16

1708 A comparison of humans and baboons suggests germline mutation rates do not track cell divisions

Wu, F. L.; Strand, A.; Ober, C.; Wall, J. D.; Moorjani, P.; Przeworski, M.

10.1101/844910 — evolutionary biology — Posted on 2019-11-16

1709 Biological and statistical interpretation of size-at-age, mixed-effects models of growth

Vincenzi, S.; Jesensek, D.; Crivelli, A. J.

10.1101/845222 — ecology — Posted on 2019-11-16

1710 The Rab5-Rab11 endosomal pathway is required for BDNF-induced CREB transcriptional regulation in neurons.

Gonzalez, A. G.; Lazo, O. M.; Bronfman, F. C.

10.1101/844720 — cell biology — Posted on 2019-11-16

1711 De novo assembly and characterization of transcriptome towards understanding molecular mechanism associated with MYMIV-resistance in Vigna mungo - A computational study

Gupta, M. K.; Donde, R.; Gouda, G.; Vadde, R.; Behera, L.

10.1101/844639 — bioinformatics — Posted on 2019-11-16

1712 Chronic Mcm10 deficiency causes defects in telomere maintenance in human cells

Baxley, R. M.; Leung, W.; Matson, J. P.; Oram, M. K.; Schmit, M. M.; Wang, L.; Hedberg, J.; Rogers, C. B.; Harvey, A. J.; Basu, D.; Hendrickson, E. A.; Mace, E. M.; Orange, J.; Cook, J. G.; Bielinsky, A.-K.

10.1101/844498 — molecular biology — Posted on 2019-11-16

1713 A complete time-calibrated multi-gene phylogeny of the European butterflies

Wiemers, M.; Chazot, N.; Wheat, C. W.; Schweiger, O.; Wahlberg, N.

10.1101/844175 — evolutionary biology — Posted on 2019-11-16

1714 ZODIAC: database-independent molecular formula annotation using Gibbs sampling reveals unknown small molecules

Ludwig, M.; Nothias, L.-F.; Dührkop, K.; Koester, I.; Fleischauer, M.; Hoffmann, M. A.; Petras, D.; Vargas, F.; Morsy, M.; Aluwihare, L.; Dorrestein, P.; Böcker, S.

10.1101/842740 — bioinformatics — Posted on 2019-11-16

1715 Identifying differential cell populations in flow cytometry data accounting for marker frequency

Yue, A.; Chauve, C.; Libbrecht, M.; Brinkman, R.

10.1101/837765 — bioinformatics — Posted on 2019-11-16

1716 Defined microbiota transplant restores Th17/RORtγ+ regulatory T cell balance in mice colonized with inflammatory bowel disease microbiotas

Britton, G. J.; Contijoch, E. J.; Spindler, M. P.; Aggarwala, V.; Bongers, G.; San Mateo, L.; Baltus, A.; Das, A.; Gevers, D.; Borody, T. J.; Kaakoush, N. O.; Kamm, M. A.; Mitchell, H.; Paramsothy, S.; Clemente, J. C.; Colombel, J.-F.; Dubinsky, M. C.; Grinspan, A.; Faith, J. J.

10.1101/844662 — immunology — Posted on 2019-11-16

1717 Spreading of a virulence lipid into host membranes promotes mycobacterial pathogenesis

Cambier, C.; Banik, S.; Buonomo, J. A.; Bertozzi, C.

10.1101/845081 — microbiology — Posted on 2019-11-16

1718 An Inflammatory Clock Predicts Multi-morbidity, Immunosenescence and Cardiovascular Aging in Humans

Sayed, N.; Gao, T.; Tibshirani, R. j.; Hastie, T.; Cui, L.; Kuznetsova, T.; Rosenberg-Hasson, Y.; Ostan, R.; Monti, D.; Lehallier, B.; Shen-Orr, S.; Maecker, H.; Dekker, C. L.; Wyss-Coray, T.; Franceschi, C.; Jojic, V.; Haddad, F.; Montoya, J. G.; Wu, J. C.; Furman, D.

10.1101/840363 — immunology — Posted on 2019-11-16

1719 Long-term absence of Langerhans cells alters the gene expression profile of keratinocytes and dendritic epidermal T cells

Su, Q.; Bouteau, A.; Cardenas, J.; Uthra, B.; Wang, Y.; Smitherman, C.; Gu, J.; Igyarto, B.

10.1101/844530 — immunology — Posted on 2019-11-16

1720 Inhibition of both mutant and wild-type RAS-GTP in KRAS G12C colorectal cancer through cotreatment with G12C and EGFR inhibitors

McFall, T.; Trogdon, M.; Sisk-Hackworth, L.; Stites, E. C.

10.1101/845263 — cancer biology — Posted on 2019-11-16

1721 Oxygen-responsive p53 tetramer-octamer switch controls cell fate

Taxak, S.; Pati, U.

10.1101/841668 — cancer biology — Posted on 2019-11-16

1722 The role of integrin αv and CD44 in GBM migration in human brain

Binder, Z. A.; Kim, S. H. J.; Wu, P.-H.; Giri, A.; Gallia, G. L.; Pardo, C. A.; Wirtz, D.

10.1101/841726 — cancer biology — Posted on 2019-11-16

1723 Effective Combination Immunotherapy using Oncolytic Viruses to Deliver CAR Targets to Solid Tumors

Park, A. K.; Fong, Y.; Chen, N.; Jeang, B.; Tilakawardane, D.; Murad, J.; Kim, S. I.; Lu, J.; Thomas, S.; Forman, S. J.; Priceman, S. J.

10.1101/843052 — cancer biology — Posted on 2019-11-16

1724 Lipid-mediated insertion of Toll-like receptor (TLR) ligands for facile immune cell engineering

Zhang, M. H.; Slaby, E. M.; Stephanie, G.; Yu, C.; Watts, D. M.; Liu, H.; Szeto, G.

10.1101/840876 — immunology — Posted on 2019-11-16

1725 Herpes Simplex Virus Infection, Acyclovir and IVIG Treatment All Independently Cause Gut Dysbiosis.

Cantin, E. M.; Ramakrishna, C.; Mendonca, S.; Reugger, P.; Kim, J. H.; Borneman, J.

10.1101/844712 — microbiology — Posted on 2019-11-15

1726 Mutation analysis of multiple pilomatricomas in a patient with myotonic dystrophy type 1 suggests a DM1-associated hypermutation phenotype

Rübben, A.; Wahl, R. U.; Eggermann, T.; Dahl, E.; Ortiz-Brüchle, N.; Cacchi, C.

10.1101/844647 — cancer biology — Posted on 2019-11-15

1727 Dual oxidase gene Duox and Toll-like receptor 3 gene TLR3 in the Toll pathway suppress zoonotic pathogens through regulating the intestinal bacterial community homeostasis in Hermetia illucens L.

Huang, Y.; Yu, Y.; Zhan, S.; Tomberlin, J. K.; Huang, D.; Cai, M.; Zheng, L.; Yu, Z.; Zhang, J.

10.1101/844696 — microbiology — Posted on 2019-11-15

1728 Comparative effectiveness of probiotic-based formulations on cecal microbiota modulation in broilers

Rodrigues, D. R.; Briggs, W.; Duff, A.; Chasser, K.; Murugesan, R.; Pender, C.; Ramirez, S.; Petri, D.; Bielke, L.

10.1101/844613 — microbiology — Posted on 2019-11-15

1729 Translational readthrough goes unseen by natural selection.

Kleppe, A. S.; Bornberg-Bauer, E.

10.1101/844621 — evolutionary biology — Posted on 2019-11-15

1730 Seasonal and annual fluctuations of deer populations estimated by a Bayesian state-space model

Mizuki, I.; Ito, H.; Yamasaki, M.; Fukumoto, S.; Okamoto, Y.; Katsuki, M.; Fukushima, K.; Sakai, M.; Sakaguchi, S.; Fujiki, D.; Nakagawa, H.; Ishihara, M.; Takayanagi, A.

10.1101/844688 — ecology — Posted on 2019-11-15

1731 A Priori Activation of Apoptosis Pathways of Tumor (AAAPT) Technology: Development of Targeted Apoptosis Initiators for Cancer Treatment .

Pandurangi, R. S.; Paulmurugan, R.

10.1101/844605 — cancer biology — Posted on 2019-11-15

1732 The adoptive transfer of BCG-induced T lymphocytes contributes to hippocampal cell proliferation and tempers anxiety-like behavior in immune deficient mice

Song, D.; Qi, F.; Liu, S.; Tang, Z.; Duan, J.; Yao, Z. B.

10.1101/844704 — neuroscience — Posted on 2019-11-15

1733 Wolbachia strain wAu efficiently blocks arbovirus transmission in Aedes albopictus

Mancini, M. V.; Herd, C. S.; Ant, T. H.; Murdochy, S. M.; Sinkins, S. P.

10.1101/844670 — microbiology — Posted on 2019-11-15

1734 Evidence for shared ancestry between Actinobacteria and Firmicutes bacteriophages

Koert, M.; Mattson, C.; Caruso, S. M.; Erill, I.

10.1101/842583 — genomics — Posted on 2019-11-15

1735 Telomere shortening produces an inflammatory environment that promotes tumor invasiveness in zebrafish

Lex, K.; Gil, M. M.; Figueira, M.; Marzullo, M.; Lopes-Bastos, B.; Giannetti, K.; Carvalho, T. G.; Ferreira, M. G.

10.1101/844084 — cancer biology — Posted on 2019-11-15

1736 Single-Cell Virtual Cytometer allows user-friendly and versatile analysis and visualization of multimodal single cell RNAseq datasets

PONT, F.; Tosolini, M.; Gao, Q.; Perrier, M.; Mencia, M. M.; Huang, T. S.; Neuvial, P.; Ayyoub, M.; Nazor, K.; Fournie, J.-J.

10.1101/843946 — bioinformatics — Posted on 2019-11-15

1737 Regionalization in the compound eye of Talitrus saltator (Crustacea, Amphipoda)

Ciofini, A.; Mercatelli, L.; Yamahama, Y.; Hariyama, T.; UGOLINI, A.

10.1101/844027 — animal behavior and cognition — Posted on 2019-11-15

1738 Apcdd1 is a dual BMP/Wnt inhibitor in the developing nervous system and skin

Vonica, A.; Bhat, N.; Phan, K.; Guo, J.; Iancu, L.; Weber, J.; Karger, A.; Cain, J. W.; Wang, E. C. E.; DeStefano, G.; O'Donnell-Luria, A.; Christiano, A. M.; Riley, B.; Butler, S.; Luria, V.

10.1101/843714 — systems biology — Posted on 2019-11-15

1739 Recently formed context fear memories can be retrieved without the hippocampus

Krueger, J. N.; Wilmot, J. H.; Teratani-Ota, Y.; Puhger, K. R.; Nemes, S. E.; Lafreniere, M.; Wiltgen, B. J.

10.1101/843342 — neuroscience — Posted on 2019-11-15

1740 Two Ways to Change Your Mind: Effects of Intentional Strength and Motor Costs on Changes of Intention.

Loffler, A.; Sylaidi, A.; Fountas, Z.; Haggard, P.

10.1101/841882 — neuroscience — Posted on 2019-11-15

1741 BlobToolKit Interactive quality assessment of genome assemblies

Challis, R. J.; Richards, E.; Ragan, J.; Cochrane, G.; Blaxter, M.

10.1101/844852 — bioinformatics — Posted on 2019-11-15

1742 Mechanistic origin of drug interactions between translation-inhibiting antibiotics

Kavcic, B.; Tkacik, G.; Bollenbach, T.

10.1101/843920 — systems biology — Posted on 2019-11-15

1743 ZIKA VIRUS INFECTION DURING PREGNANCY AND INDUCED BRAIN PATHOLOGY IN BECLIN1-DEFICIENT MOUSE MODEL

Muthu Karuppan, M. K.; Ojha, C. R.; Rodriguez, M.; Lapierre, J.; Aman, J.; Kashanchi, F.; Toborek, M.; Nair, M.; El-Hage, N.

10.1101/843813 — immunology — Posted on 2019-11-15

1744 Integrating multi-OMICS data through sparse Canonical Correlation Analysis for predicting complex traits: A comparative study

Rodosthenous, T.; Evangelou, M.; Shahrezaei, V.

10.1101/843524 — genomics — Posted on 2019-11-15

1745 Comparison of Shiga toxin-encoding bacteriophages in highly pathogenic strains of Shiga toxin-producing Escherichia coli O157:H7 in the UK.

Yara, D.; Greig, D. R.; Gally, D. L.; Dallman, T.; Jenkins, C.

10.1101/843987 — genomics — Posted on 2019-11-15

1746 Variation at the Klotho gene locus does not affect cognitive function in up to 335,074 British Caucasians.

Amin, H. A.; Drenos, F.; Blakemore, A. I.

10.1101/838409 — genetics — Posted on 2019-11-15

1747 Congruent demographic responses to Pleistocene geological processes in Sumatran parachuting frogs: a comparison of target-capture and ddRADseq for population genomic analyses

O'Connell, K. A.; Smith, E. N.; Hamidy, A.; Kurniawan, N.; Fujita, M. K.

10.1101/843664 — evolutionary biology — Posted on 2019-11-15

1748 Predicting the carbon source for Bacillus subtilis by integrating gene expression profiles into a constraint-based metabolic model

Thanamit, K.; Hoerhold, F.; Oswald, M.; Koenig, R.

10.1101/842518 — bioinformatics — Posted on 2019-11-15

1749 Dynamic Brain-Body Coupling of Breath-by-Breath O2-CO2 Exchange Ratio with Resting State Cerebral Hemodynamic Fluctuations

Chan, S.-t.; Evans, K.; Song, T.-y.; Selb, J.; van der Kouwe, A.; Rosen, B. R.; Zheng, Y.-p.; Ahn, A.; Kwong, K.

10.1101/843482 — neuroscience — Posted on 2019-11-15

1750 AutoGenome: An AutoML Tool for Genomic Research

Liu, D.; Xu, C.; He, W.; Xu, Z.; Fu, W.; Zhang, L.; Yang, J.; Peng, G.; Han, D.; Bai, X.; Qiao, N.

10.1101/842526 — genomics — Posted on 2019-11-15

1751 WormCat: an online tool for annotation and visualization of Caenorhabditis elegans genome-scale data

Holdorf, A. D.; Higgins, D. P.; Hart, A. C.; Boag, P. R.; Pazour, G.; Walhout, M.; Walker, A. K.

10.1101/844928 — bioinformatics — Posted on 2019-11-15

1752 Quantifying individual influence in leading-following behavior of Bechstein's bats

Mavrodiev, P.; Fleischmann, D.; Kerth, G.; Schweitzer, F.

10.1101/843912 — animal behavior and cognition — Posted on 2019-11-15

1753 Including Data Analytical Stability in Cluster-basedInference

Loeys, T.; Moerkerke, B.; Roels, S.

10.1101/844860 — neuroscience — Posted on 2019-11-15

1754 Cerebrovascular reactivity assessment with O2-CO2 exchange ratio under brief breath hold challenge

Chan, S.-t.; Evans, K.; Song, T.-y.; Selb, J.; van der Kouwe, A.; Rosen, B. R.; Zheng, Y.-p.; Ahn, A.; Kwong, K.

10.1101/843425 — neuroscience — Posted on 2019-11-15

1755 Natural diversity in the predatory behavior facilitates the establishment of a new robust model strain for nematode-trapping fungi

Yang, C.-T.; Vidal-Diez de Ulzurrun, G.; Goncalves, A. P.; Lin, H.-C.; Chang, C.-W.; Huang, T.-Y.; Chen, S.-A.; Lai, C.-K.; Tsai, I. J.; Schroeder, F. C.; Stajich, J. E.; Hsueh, Y.-P.

10.1101/843698 — molecular biology — Posted on 2019-11-15

1756 synergistic and antagonistic drug interactions in the treatment of systemic fungal infections

Wambaugh, M. A.; Denham, S. T.; Brammer, B.; Stonhill, M. A.; Brown, J. C. S.

10.1101/843540 — microbiology — Posted on 2019-11-15

1757 Phosphate transporter PstSCAB of Campylobacter jejuni is essential for lactate-dependent growth and colonization in chickens

DiRita, V. J.; Sinha, R.; LeVeque, R. M.; Gray, M. J.; Bowlin, M. Q.

10.1101/843771 — microbiology — Posted on 2019-11-15

1758 aCPSF1 controlled archaeal transcription termination: a prototypical eukaryotic model

Yue, L.; Li, J.; Zhang, B.; Qi, L.; Zhao, F.; Li, L.; Dong, X.

10.1101/843821 — microbiology — Posted on 2019-11-15

1759 MyD88-Syk axis is a critical determinant for inflammatory response in macrophages

Yi, Y.-S.; Kim, J. H.; Yang, W. S.; Kim, E.; Jeong, D.; Park, J. G.; Aziz, N.; Kim, S.; Parameswaran, N.; Cho, J. Y.

10.1101/844076 — immunology — Posted on 2019-11-15

1760 Multiple routes to interspecific territoriality in sister species of North American perching birds

Cowen, M. C.; Drury, J. P.; Grether, G. F.

10.1101/843516 — evolutionary biology — Posted on 2019-11-15

1761 Non-coding rather than coding regions underpin avian bill shape diversification at macroevolutionary scales

Yusuf, L.; Heatley, M.; Palmer, J. P.; Barton, H. J.; Cooney, C. R.; Gossmann, T. I.

10.1101/844951 — evolutionary biology — Posted on 2019-11-15

1762 The conserved and divergent roles of Prdm3 and Prdm16 in zebrafish and mouse craniofacial development

Shull, L.; Sen, R.; Menzel, J.; Artinger, K. B.

10.1101/844936 — developmental biology — Posted on 2019-11-15

1763 CXCR4 intracellular protein regulates drug resistance and tumorigenic potential via modulating the expression of Death Receptor 5

Nengroo, M. A.; Maheshwari, S.; Singh, A.; Singh, A. K.; Arya, R. K.; Chaturvedi, P.; Verma, A.; Saini, K. K.; Gupta, A.; Mishra, A.; Datta, D.

10.1101/843995 — cancer biology — Posted on 2019-11-15

1764 An integrative resource for investigating genetic model of drug response in cancer

Guo, Y.; Chen, X.

10.1101/555789 — bioinformatics — Posted on 2019-11-15

1765 Can Living with an Alien Invasive Fish, Tilapia, Influence the Shoaling Decision-Making and Exploratory Behaviour of an Air-Breathing Freshwater Fish, the Climbing Perch?

Binoy, V. V.; Ingle, B. J.; Bhattacharya, A.; Sinha, A.

10.1101/839563 — animal behavior and cognition — Posted on 2019-11-15

1766 Data-driven modeling of leading-following behavior in Bechstein's bats

Mavrodiev, P.; Fleischmann, D.; Kerth, G.; Schweitzer, F.

10.1101/843938 — animal behavior and cognition — Posted on 2019-11-15

1767 Testing Models of the Visual Word Form Area Using Combined ERP and fMRI Using the Special Properties of Chinese Characters

Xiang, D.; Dien, J.; Bolger, D. J.

10.1101/841817 — neuroscience — Posted on 2019-11-15

1768 STRESS-INDUCED GENETIC CHANGE IN FLAX REVEALS GENOME VARIATION MECHANISM

Li, X.

10.1101/843763 — genomics — Posted on 2019-11-15

1769 Introduced species dominate different responses of grassland communities to climate change on serpentine and nonserpentine soils

Braasch, J.; Johnson, M. A.; Harrison, S. P.; Dlugosch, K. M.

10.1101/844886 — ecology — Posted on 2019-11-15

1770 PERICYTE-LIKE CELLS UNDERGO TRANSCRIPTIONAL REPROGRAMMING AND DISTINCT FUNCTIONAL ADAPTATIONS IN ACUTE LUNG INJURY

Hung, C. F.; Holton, S.; Chow, Y.-H.; Liles, W. C.; Gharib, S.; Altemeier, W. A.

10.1101/843805 — cell biology — Posted on 2019-11-15

1771 Insulin signaling gates long-term memory formation in Drosophila larvae

Eschment, M.; Franz, H. R.; Güllü, N.; Hölscher, L. G.; Huh, K.-E.; Widmann, A.

10.1101/842997 — neuroscience — Posted on 2019-11-15

1772 IRIS: Big data-informed discovery of cancer immunotherapy targets arising from pre-mRNA alternative splicing

Pan, Y.; Lee, A. H.; Yang, H. T.; Wang, Y.; Xu, Y.; Kadash-Edmondson, K. E.; Phillips, J.; Champhekar, A.; Puig, C.; Ribas, A.; Witte, O. N.; Prins, R. M.; Xing, Y.

10.1101/843268 — bioinformatics — Posted on 2019-11-15

1773 A comparison of neuronal population dynamics measured with calcium imaging and electrophysiology

Wei, Z.; Lin, B.-J.; Chen, T.-W.; Daie, K.; Svoboda, K.; Druckmann, S.

10.1101/840686 — neuroscience — Posted on 2019-11-15

1774 Phenotypic size heterogeneity is a viral mechanism of persistence

Li, T.; Li, Z.; Liu, M.; Deans, E. E.; Ivanovic, T.

10.1101/843177 — microbiology — Posted on 2019-11-15

1775 A unique predator in a unique ecosystem: modelling the apex predator from the Late Cretaceous crocodyliform-dominated fauna in Brazil.

Montefeltro, F. C.; Lautenschlager, S.; Godoy, P. L.; Ferreira, G. S.; Butler, R. J.

10.1101/843334 — paleontology — Posted on 2019-11-15

1776 Conductance-based Adaptive Exponential integrate-and-fire model

Depannemaecker, D.; Gorski, T.; Destexhe, A.

10.1101/842823 — neuroscience — Posted on 2019-11-15

1777 Functional Organization of Mouse Primary Auditory Cortex in adult C57BL/6 and F1 (CBAxC57) mice

Bowen, Z.; Winkowski, D. E.; Kanold, P. O.

10.1101/843300 — neuroscience — Posted on 2019-11-15

1778 Integrated Genomic Analysis Reveals Key Features of Long Undecoded Transcript Isoform (LUTI)-based Gene Repression

Tresenrider, A.; Jorgensen, V.; Chia, M.; Liao, H.; van Werven, F.; Unal, E.

10.1101/843458 — molecular biology — Posted on 2019-11-15

1779 RNA modifications detection by comparative Nanopore direct RNA sequencing

Leger, A.; Amaral, P. P.; Pandolfini, L.; Capitanchik, C.; Capraro, F.; Barbieri, I.; Migliori, V.; Luscombe, N. M.; Enright, A. J.; Tzelepis, K.; Ule, J.; Fitzgerald, T.; Birney, E.; Leonardi, T.; Kouzarides, T.

10.1101/843136 — genomics — Posted on 2019-11-15

1780 RNA Sequencing by Direct Tagmentation of RNA/DNA Hybrids

Di, L.; Fu, Y.; Sun, Y.; Li, J.; Liu, L.; Yao, J.; Wang, G.; Wu, Y.; Lao, K.; Lee, R. W.; Zheng, G.; Xu, J.; Oh, J.; Wang, D.; Xie, X. S.; Huang, Y.; Wang, J.

10.1101/843474 — molecular biology — Posted on 2019-11-15

1781 XenoCP: Cloud-based BAM cleansing tool for RNA and DNA from Xenograft

arunachalam, s.; Zhang, J.

10.1101/843250 — bioinformatics — Posted on 2019-11-15

1782 Reduction of cybersickness during and immediately following noisy galvanic vestibular stimulation

Weech, S.; Wall, T.; Barnett-Cowan, M.

10.1101/843060 — neuroscience — Posted on 2019-11-15

1783 Neural correlates of goal-directed and non-goal-directed movements

Sendhilnathan, N.; Basu, D.; Goldberg, M. E.; Schall, J. D.; Murthy, A.

10.1101/843011 — neuroscience — Posted on 2019-11-15

1784 Positive valence bias is associated with inverse frontoamygdalar connectivity and less depressive symptoms in developmentally mature children

Petro, N.; Tottenham, N.; Neta, M.

10.1101/839761 — neuroscience — Posted on 2019-11-15

1785 A novel vaccine targeting the viral protease cleavage sites protects Mauritian cynomolgus macaques against vaginal SIVmac251 infection

10.1101/842955 — microbiology — Posted on 2019-11-15

1786 Diverse noncoding mutations contribute to deregulation of cis-regulatory landscape in pediatric cancers

He, B.; Gao, P.; Ding, Y.-y.; Chen, C.-h.; Chen, G.; Chen, C.; Kim, H.; Tasian, S. K.; Hunger, S. P.; Tan, K.

10.1101/843102 — cancer biology — Posted on 2019-11-15

1787 Distinct roles for the Charcot-Marie-Tooth disease-causing endosomal regulators Mtmr5 and Mtmr13 in axon radial sorting and Schwann cell myelination

Mammel, A. E.; Delgado, K. C.; Chin, A. L.; Condon, A. F.; Hill, J. Q.; Aicher, S. A.; Wang, Y.; Fedorov, L. M.; Robinson, F. L.

10.1101/843219 — neuroscience — Posted on 2019-11-15

1788 Targeted complement inhibition at synapses prevents microglial synaptic engulfment and synapse loss in demyelinating disease

Werneburg, S.; Jung, J.; Kunjamma, R. B.; Ha, S.-K.; Luciano, N. J.; Willis, C. M.; Gao, G.; Crocker, S. J.; Popko, B.; Reich, D. S.; Schafer, D. P.

10.1101/841601 — neuroscience — Posted on 2019-11-15

1789 Hippocampal spatial memory representations in mice are heterogeneously stable

Levy, S. J.; Kinsky, N. R.; Mau, W.; Sullivan, D. W.; Hasselmo, M. E.

10.1101/843037 — neuroscience — Posted on 2019-11-15

1790 Variability in the analysis of a single neuroimaging dataset by many teams

Botvinik-Nezer, R.; Holzmeister, F.; Camerer, C.; Dreber, A.; Huber, J.; Johannesson, M.; Kirchler, M.; Nichols, T. E.; Poldrack, R. A.; Schonberg, T.

10.1101/843193 — neuroscience — Posted on 2019-11-15

1791 Narrative and gaming experience interact to affect presence and cybersickness in virtual reality

Weech, S.; Kenny, S.; Lenizky, M.; Barnett-Cowan, M.

10.1101/843169 — neuroscience — Posted on 2019-11-15

1792 Advances in Spiral fMRI: A High-resolution Study with Single-shot Acquisition

Kasper, L.; Engel, M.; Heinzle, J.; Mueller-Schrader, M.; Reber, J.; Schmid, T.; Barmet, C.; Wilm, B. J.; Stephan, K. E.; Pruessmann, K. P.

10.1101/842179 — neuroscience — Posted on 2019-11-15

1793 Topological constraints in early multicellularity favor reproductive division of labor

Yanni, D.; Jacobeen, S.; Marquez-Zacarias, P.; Weitz, J. S.; Ratcliff, W. C.; Yunker, P. J.

10.1101/842849 — evolutionary biology — Posted on 2019-11-15

1794 Global reprogramming of virulence and antibiotic resistance in Pseudomonas aeruginosa by a single nucleotide polymorphism in the elongation factor-encoding gene, fusA1.

Maunders, E. A.; Triniman, R.; Rahman, T.; Welch, M.

10.1101/842781 — microbiology — Posted on 2019-11-15

1795 Evaluation of primer pairs for microbiome profiling across a food chain from soils to humans within the One Health framework

Wasimuddin, W.; Schlaeppi, K.; Ronchi, F.; Leib, S. L.; Erb, M.; Ramette, A.

10.1101/843144 — microbiology — Posted on 2019-11-15

1796 Resist or perish: fate of a microbial population subjected to a periodic presence of antimicrobial

Marrec, L.; Bitbol, A.-F.

10.1101/843094 — evolutionary biology — Posted on 2019-11-15

1797 A sectioning and database enrichment approach for improved peptide spectrum matching in large, genome-guided protein sequence databases

Kumar, P.; Johnson, J.; Easterly, C.; Mehta, S.; Sajulga, R.; Nunn, B. L.; Jagtap, P. D.; Griffin, T. J.

10.1101/843078 — bioinformatics — Posted on 2019-11-15

1798 Sex differences in cognitive performance, style and domain relationships in mosquitofish (Gambusia affinis)

Wallace, K. J.; Rausch, R. T.; Ramsey, M. E.; Cummings, M. E.

10.1101/842278 — animal behavior and cognition — Posted on 2019-11-15

1799 Sensorimotor expectations bias motor resonance during observation of object lifting: The causal role of pSTS

Rens, G.; van Polanen, V.; Botta, A.; Gann, M. A.; Orban de Xivry, J.-J.; Davare, M.

10.1101/839712 — neuroscience — Posted on 2019-11-15

1800 An open database of resting-state fMRI in awake rats

Liu, Y.; Perez, P. D.; Ma, Z.; Ma, Z.; Dopfel, D.; Cramer, S.; Tu, W.; Zhang, N.

10.1101/842807 — neuroscience — Posted on 2019-11-15

1801 A highly multiplexed melt-curve assay for detecting the most prevalent carbapenemase, ESBL and AmpC genes

Edwards, T.; Williams, C.; Teethaisong, Y.; Sealey, J.; Sasaki, S.; Hobbs, G.; Cuevas, L.; Evans, K.; Adams, E.

10.1101/842963 — microbiology — Posted on 2019-11-15

1802 Genome-wide profiling of druggable active tumor defense mechanisms to enhance cancer immunotherapy

10.1101/843185 — immunology — Posted on 2019-11-15

1803 Meso-scale multi-material fabrication of a Synthetic ECM Mimic for In vivo-like Peripheral Nerve Regeneration

Wieringa, P.; Goncalves de Pinho, A. R.; Truckenmueller, R.; Micera, S.; van Wezel, R.; Moroni, L.

10.1101/842906 — bioengineering — Posted on 2019-11-15

1804 Associations between aversive learning processes and transdiagnostic psychiatric symptoms revealed by large-scale phenotyping

Wise, T.; Dolan, R. J.

10.1101/843045 — neuroscience — Posted on 2019-11-15

1805 Magnetic-Alignment of Polymer Nanodiscs Probed by Solid-State NMR Spectroscopy

Ravula, T.; Kim, J.; Lee, D.-K.; Ramamoorthy, A.

10.1101/844332 — biophysics — Posted on 2019-11-15

1806 Multi-omics Visualization Platform: An extensible Galaxy plug-In for multi-omics data visualization and exploration

McGowan, T.; Johnson, J. E.; Kumar, P.; Sajulga, R.; Mehta, S.; Jagtap, P. D.; Griffin, T. J.

10.1101/842856 — bioinformatics — Posted on 2019-11-15

1807 Transcriptome-wide association analysis of 211 neuroimaging traits identifies new genes for brain structures and yields insights into the gene-level pleiotropy with other complex traits

Zhao, B.; Shan, Y.; Yang, Y.; Li, T.; Luo, T.; Zhu, Z.; Li, Y.; Zhu, H.

10.1101/842872 — genetics — Posted on 2019-11-15

1808 Elevated CO2 effects on morphology and survival rate in intertidal benthic foraminifera

Kannan, G.; Ayyappan, S.; Peramal, K.

10.1101/843086 — ecology — Posted on 2019-11-15

1809 SLAST: Simple Local Alignment Search Tool

Bermudez, J.

10.1101/840546 — bioinformatics — Posted on 2019-11-15

1810 MXD/MIZ1 complexes activate transcription of MYC-repressed genes

Shostak, A.; Schermann, G.; Diernfellner, A.; Brunner, M.

10.1101/842799 — molecular biology — Posted on 2019-11-15

1811 Index and biological spectrum of accessible DNA elements in the human genome

Meuleman, W.; Muratov, A.; Rynes, E.; Halow, J.; Lee, K.; Bates, D.; Diegel, M.; Dunn, D.; Neri, J.; Teodosiadis, A.; Reynolds, A.; Haugen, E.; Nelson, J. S.; Johnson, A.; Frerker, M.; Buckley, M.; Sandstrom, R.; Vierstra, J.; Kaul, R.; Stamatoyannopoulos, J. A.

10.1101/822510 — genomics — Posted on 2019-11-15

1812 Genetic control of the human brain proteome

Robins, C.; Wingo, A. P.; Fan, W.; Doung, D. M.; Meigs, J.; Gerasimov, E. S.; Dammer, E. B.; Cutler, D. J.; De Jager, P.; Bennett, D. A.; Lah, J. J.; Levey, A. I.; Seyfried, N. T.; Wingo, T. S.

10.1101/816652 — genetics — Posted on 2019-11-15

1813 Citizen science and aquatic macroinvertebrates: public engagement for catchment-scale pollution vigilance

Moolna, A.; Duddy, M.; Fitch, B.; White, K.

10.1101/842559 — ecology — Posted on 2019-11-15

1814 Spatially heterogeneous dynamics of cells in a growing tumor spheroid: Comparison between Theory and Experiments

Sinha, S.; Kakkada, A. N.-M.; Li, X.; Samanta, H.; Thirumalai, D.

10.1101/842930 — biophysics — Posted on 2019-11-15

1815 DNA repair and mutagenesis in vertebrate mitochondria: evidence for the asymmetric DNA strand inheritance.

Matkarimov, B. T.; Saparbaev, M.

10.1101/842617 — molecular biology — Posted on 2019-11-15

1816 Domoic acid disruption of neurodevelopment and behaviorinvolves altered myelination in the spinal cord

Panlilio, J. M.; Aluru, N.; Hahn, M. E.

10.1101/842294 — pharmacology and toxicology — Posted on 2019-11-15

1817 Analysis of the human oral microbiome from modern and historical samples with SPARSE andEToKi

Achtman, M.; Zhou, Z.

10.1101/842542 — microbiology — Posted on 2019-11-15

1818 Characterization of Mollivirus kamchatka, the first modern representative of the proposed Molliviridae family of giant viruses

Christo-Foroux, E.; Alempic, J.-M.; Lartigue, A.; Santini, S.; Legendre, M.; Abergel, C.; Claverie, J.-M.

10.1101/844274 — microbiology — Posted on 2019-11-15

1819 Probing the Subcellular Distribution of Phosphatidylinositol Reveals a Surprising Lack at the Plasma Membrane

Zewe, J.; Miller, A.; Sangappa, S.; Wills, R.; Goulden, B.; Hammond, G. R.

10.1101/677039 — cell biology — Posted on 2019-11-15

1820 Optical measurements of endogenous ion channel activation in live tissue

Thapa, P.; Stewart, R.; Sepela, R. J.; Vivas, O.; Parajuli, L. K.; Lillya, M.; Fletcher-Taylor, S.; Cohen, B. E.; Zito, K.; Sack, J. T.

10.1101/541805 — biophysics — Posted on 2019-11-15

1821 Structural basis of peptidoglycan endopeptidase regulation

Shin, J.-H.; Sulpizio, A.; Kelley, A.; Alvarez, L.; Murphy, S.; Cava, f.; Mao, Y.; Saper, M. A.; Doerr, T.

10.1101/843615 — microbiology — Posted on 2019-11-15

1822 A literature mining method to judge whether there are uncertaintiesin empirical-dependent antineoplastic drug distribution in specificclinical scenarios.

Ji, X.; Feng, Z.; Zhang, Q.; Zhang, Z.; Fan, Y.; Na, R.; Niu, G.

10.1101/842401 — bioinformatics — Posted on 2019-11-15

1823 Nonthermal plasma treatment of polymers modulates biological fouling but can cause material embrittlement

Learn, G. D.; Lai, E. J.; Wilson, E. J.; von Recum, H. A.

10.1101/842260 — bioengineering — Posted on 2019-11-15

1824 Investigations of the mechanisms of interactions between four non-conventional species with Saccharomyces cerevisiae in oenological conditions

Harle, O.; Legrand, J.; Tesniere, C.; Pradal, M.; Mouret, J.-R.; Nidelet, T.

10.1101/363531 — microbiology — Posted on 2019-11-15

1825 Repurposing disulfiram (Tetraethylthiuram Disulfide) as a potential drug candidate against Borrelia burgdorferi in vitro and in vivo

Potula, H.-H. s.; Shahryari, J.; Inayathullah, M.; Malkovskiy, A. V.; Kim, K.-M.; Rajadas, J.

10.1101/842286 — microbiology — Posted on 2019-11-15

1826 Affinity-engineered human antibodies detect celiac disease gluten pMHC complexes and inhibit T-cell activation

Frick, R.; Hoydahl, L. S.; Hodnebrug, I.; Kumari, S.; Berntsen, G.; Jeliazkov, J. R.; Gunnarsen, K. S.; Frigstad, T.; Vik, E. S.; Lundin, K. E. A.; Yaqub, S.; Jahnsen, J.; Gray, J. J.; Sollid, L. M.; Sandlie, I.; Loset, G. A.

10.1101/840561 — immunology — Posted on 2019-11-15

1827 An edge-based formulation of elastic network models

Hodges, M.; Yaliraki, S. N.; Barahona, M.

10.1101/842732 — biophysics — Posted on 2019-11-15

1828 Nanocomposite bioink exploits dynamic covalent bonds between nanoparticles and polysaccharides for precision bioprinting

Lee, M.; Bae, K.; Levinson, C.; Zenobi-Wong, M.

10.1101/839985 — bioengineering — Posted on 2019-11-15

1829 Real-time measurement of E2:ERα transcriptional activity in live-cells.

Cipolletti, M.; Leone, S.; Bartoloni, S.; Busonero, C.; Acconcia, F.

10.1101/844761 — physiology — Posted on 2019-11-15

1830 The C-terminal tail guides assembly and degradation of membrane proteins

Sun, S.; Mariappan, M.

10.1101/843326 — cell biology — Posted on 2019-11-15

1831 Three-dimensional traction microscopy accounting for cell-induced matrix degradation

Song, D.; Seidl, D. T.; Oberai, A. A.

10.1101/842831 — biophysics — Posted on 2019-11-15

1832 The insulin receptor adaptor IRS2 is an APC/C substrate that promotes cell cycle protein expression and a robust spindle assembly checkpoint

Manohar, S.; Yu, Q.; Gygi, S. P.; King, R. W.

10.1101/829572 — cell biology — Posted on 2019-11-15

1833 Transcription closed and open complex formation coordinate expression of genes with a shared promoter region

Hakkinen, A.; Oliveira, S. M. D.; Neeli-Venkata, R.; Ribeiro, A. S.

10.1101/842484 — biophysics — Posted on 2019-11-15

1834 Mapping cellular-scale internal stiffness in 3D tissues with smart material hydrogel probes

Mok, S.; Al Habyan, S.; Ledoux, C.; Lee, W.; MacDonald, K.; McCaffrey, L.; Moraes, C.

10.1101/840736 — biophysics — Posted on 2019-11-15

1835 Prediction of liquid-liquid phase separation proteins using machine learning

Sun, T.; Li, Q.; Xu, Y.; Zhang, Z.; Lai, L.; Pei, J.

10.1101/842336 — bioinformatics — Posted on 2019-11-15

1836 A deep learning framework for improving protein interaction prediction using sequence properties

Guo, Y.; Chen, X.

10.1101/843755 — bioinformatics — Posted on 2019-11-15

1837 An allosteric hot-spot in the tandem-SH2 domain of ZAP-70 regulates T-cell signaling

Gangopadhyay, K.; Manna, B.; Roy, S.; Debnath, O.; Kumari, S.; Chowdhury, S.; Ghosh, A.; Das, R.

10.1101/842534 — biochemistry — Posted on 2019-11-15

1838 Taste of time: A porous-medium model for human tongue surface with implications for early taste perception

Wu, Z.; Zhao, K.

10.1101/780429 — neuroscience — Posted on 2019-11-15

1839 Loss of IKK subunits limits NF-κB signaling in reovirus infected cells

McNamara, A. J.; Danthi, P.

10.1101/843680 — microbiology — Posted on 2019-11-15

1840 Regeneration comes for free with biological development in a generative Boolean model

Mani, S.; Tlusty, T.

10.1101/843888 — developmental biology — Posted on 2019-11-15

1841 Effect of the divalent cations zinc and calcium on the structure and mechanics of reconstituted vimentin intermediate filaments

Wu, H.; Shen, Y.; Wang, D.; Herrmann, H.; Goldman, R. D.; Weitz, D. A.

10.1101/844167 — biophysics — Posted on 2019-11-15

1842 Atypical Protein Kinase C iota (PKC{lambda}/{iota}) Ensures Mammalian Development by Establishing the Maternal-Fetal Exchange Interface

Bhattacharya, B.; Home, P.; Ganguly, A.; Ray, S.; Ghosh, A.; Islam, M. R.; French, V.; Marsh, C.; Gunewardena, S.; Okae, H.; Arima, T.; Paul, S.

10.1101/843375 — developmental biology — Posted on 2019-11-15

1843 Microneedle manipulation of the mammalian spindle reveals specialized, short-lived reinforcement near chromosomes

Suresh, P.; Long, A. F.; Dumont, S.

10.1101/843649 — cell biology — Posted on 2019-11-15

1844 Practical Speedup of Bayesian Inference of Species Phylogenies by Restricting the Space of Gene Trees

Wang, Y.; Ogilvie, H. A.; Nakhleh, L.

10.1101/770784 — bioinformatics — Posted on 2019-11-15

1845 Proteolytic Cleavage by Matriptase Exacerbating Kidney Injury: a Novel Therapeutic Target

Ozawa, S.; Matsubayashi, M.; Nanaura, H.; Yanagita, M.; Mori, K.; Asanuma, K.; Kajiwara, N.; Hayashi, K.; Ohashi, H.; Kasahara, M.; Yokoi, H.; Kataoka, H.; Mori, E.; Nakagawa, T.

10.1101/843607 — biochemistry — Posted on 2019-11-15

1846 Ubiquitination modulates a protein energy landscape site-specifically with consequences for proteasomal degradation

Carroll, E. C.; Greene, E. R.; Martin, A.; Marqusee, S.

10.1101/843631 — biochemistry — Posted on 2019-11-15

1847 DNA-BOT: A low-cost, automated DNA assembly platform for synthetic biology

Storch, M.; Haines, M. C.; Baldwin, G. S.

10.1101/832139 — synthetic biology — Posted on 2019-11-15

1848 A phylogenetic model for the recruitment of species into microbial communities and application to studies of thehuman microbiome

Darcy, J. L.; Washburne, A. D.; Robeson, M. S.; Prest, T.; Schmidt, S. K.; Lozupone, C. A.

10.1101/685644 — microbiology — Posted on 2019-11-15

1849 Role of a versatile peptide motif in controlling Hox nuclear export and autophagy in the Drosophila fat body

merabet, s.; Duffraisse, M.; Paul, R.; Hudry, B.; Carnesecchi, J.; Reboulet, J.; Ajuria, l.; Lohmann, I.

10.1101/843383 — developmental biology — Posted on 2019-11-15

1850 Hot-spots and their contribution to the self-assembly of the viral capsid: in-vitro validation

Valdez-Lara, A. G.; Andrade-Medina, M.; Aleman-Vilis, J. A.; Perez-Montoya, A. A.; Pineda-Aguilar, N.; Martinez-Guerra, E.; Roldan-Salgado, A.; Gaytan, P.; Carrillo-Tripp, M.

10.1101/724146 — biophysics — Posted on 2019-11-15

1851 An R Package for Divergence Analysis of Omics Data

Dinalankara, W.; Ke, Q.; Geman, D.; Marchionni, L.

10.1101/720391 — bioinformatics — Posted on 2019-11-15

1852 von Willebrand Factor D and EGF Domains is an evolutionarily conserved and required feature of blastemas capable of multi-tissue appendage regeneration

Leigh, N. D.; Sessa, S.; Dragalzew, A. C.; Payzin-Dogru, D.; Sousa, J. F.; Aggouras, A.; Johnson, K.; Dunlap, G. S.; Haas, B. J.; Levin, M.; Schneider, I.; Whited, J. L.

10.1101/842948 — developmental biology — Posted on 2019-11-15

1853 A cooperative network of molecular "hot spots" highlights the complexity of LH3 collagen glycosyltransferase activities

Chiapparino, A.; De Giorgi, F.; Scietti, L.; Faravelli, S.; Roscioli, T.; Forneris, F.

10.1101/841486 — biochemistry — Posted on 2019-11-15

1854 Specificity in auxin responses is not explained by the promoter preferences of activator ARFs

Lanctot, A.; Taylor-Teeples, M.; Oki, E. A.; Nemhauser, J.

10.1101/843391 — plant biology — Posted on 2019-11-15

1855 Interactions between cytoplasmic and nuclear genomes confer sex-specific effects on lifespan in Drosophila melanogaster

Vaught, R. C.; Voigt, S.; Dobler, R.; Clancy, D. C.; Reinhardt, K.; Dowling, D. K.

10.1101/842716 — evolutionary biology — Posted on 2019-11-15

1856 Separations-Encoded Microparticles For Single-Cell Western Blotting

Gumuscu, B.; Herr, A.

10.1101/580233 — bioengineering — Posted on 2019-11-15

1857 Modeling Bottom-Up and Top-Down Attention with a Neurodynamic Model of V1

Berga, D.; Otazu, X.

10.1101/590174 — neuroscience — Posted on 2019-11-15

1858 Genomic epidemiology of vancomycin resistant Enterococcus faecium (VREfm) in Latin America: Revisiting the global VRE population structure

Rios, R.; Reyes, J.; Carvajal, L. P.; Rincon, S.; Panesso, D.; Planet, P.; Echeverri, A. M.; Dinh, A.; Kolokotronis, S.-O.; Narechania, A.; Tran, T. T.; Munita, J. M.; Murray, B.; Arias, C. A.; Diaz, L.

10.1101/842013 — microbiology — Posted on 2019-11-15

1859 Neanderthal introgression reintroduced functional ancestral alleles lost in Eurasian populations

Rinker, D. C.; Simonti, C.; McArthur, E.; Shaw, D.; Hodges, E.; Capra, J. A.

10.1101/533257 — evolutionary biology — Posted on 2019-11-15

1860 Spatial eco-evolutionary feedbacks mediate coexistence in prey-predator systems

Colombo, E. H.; Martinez-Garcia, R.; Lopez, C.; Hernandez-Garcia, E.

10.1101/543934 — ecology — Posted on 2019-11-15

1861 From plasmodesma geometry to effective symplasmic permeability through biophysical modelling

Deinum, E. E.; Benitez Alfonso, Y.; Mulder, B.

10.1101/668715 — cell biology — Posted on 2019-11-15

1862 HIV-1 Envelope and MPER antibody structures in lipid assemblies

Rantalainen, K.; Berndsen, Z. T.; Antanasijevic, A.; Schiffner, T.; Zhang, X.; Lee, W.-H.; Torres, J. L.; Zhang, L.; Irimia, A.; Copps, J.; Zhou, K.; Kwon, Y. D.; Law, W. H.; Schramm, C. A.; Verardi, R.; Krebs, S.; Kwong, P. D.; Doria-Rose, N. A.; Wilson, I. A.; Zwick, M. B.; Yates, J. R.; Schief, W. R.; Ward, A.

10.1101/838912 — immunology — Posted on 2019-11-15

1863 Eliciting priors and relaxing the single causal variant assumption in colocalisationanalyses

Wallace, C.

10.1101/838946 — genetics — Posted on 2019-11-15

1864 Group I p21-activated kinases (PAKs) are largely dispensable for insulin-stimulated glucose uptake in mouse skeletal muscle

Moller, L. L. V.; Jaurji, M.; Kjobsted, R.; Joseph, G. A.; Madsen, A. B.; Knudsen, J. R.; Lundsgaard, A.-M.; Andersen, N. R.; Schjerling, P.; Jensen, T. E.; Krauss, R. S.; Richter, E. A.; Sylow, L.

10.1101/543736 — cell biology — Posted on 2019-11-15

1865 Evaluation of yield, yield stability and yield-protein trade-off in commercial faba bean cultivars

Skovbjerg, C. K.; Knudsen, J. N.; Füchtbauer, W.; Stougaard, J.; Stoddard, F. L.; Janss, L.; Andersen, S. U.

10.1101/843862 — plant biology — Posted on 2019-11-15

1866 Bombs and cocaine: detecting nefarious nitrogen sources using remote sensing and machine learning

Adams, C.; Chee, S. M.; Bell, D.; Windram, O. P. F.

10.1101/842641 — plant biology — Posted on 2019-11-15

1867 Recycling of energy dissipated as heat accounts for high activity of Photosystem II

Zubik, M.; Luchowski, R.; Kluczyk, D.; Grudzinski, W. H.; Maksim, M.; Nosalewicz, A.; Gruszecki, W. I.

10.1101/842591 — plant biology — Posted on 2019-11-15

1868 An endophytic bacteria (Pseudomonas aeruginosa) strain translocated and protected tomato (Solanum lycopersicum L.) plants from its parasitic weed Phelipanche aegyptiaca

Iasur Kruh, L. I.; Abu - Nassar, J.; Lidor, O.; Ali, R.

10.1101/842757 — microbiology — Posted on 2019-11-15

1869 Islet macrophages shift to a reparative state following pancreatic beta-cell death and are a major source of islet IGF-1

Nackiewicz, D.; Dan, M.; Speck, M.; Chow, S.; Chen, Y.-C.; Pospisilik, J. A.; Verchere, B.; Ehses, J.

10.1101/480368 — immunology — Posted on 2019-11-15

1870 Phytoplankton thermal responses adapt in the absence of hard thermodynamic constraints

Kontopoulos, D. - G.; van Sebille, E.; Lange, M.; Yvon-Durocher, G.; Barraclough, T. G.; Pawar, S.

10.1101/452250 — evolutionary biology — Posted on 2019-11-15

1871 Two distributed semi-supervised algorithms for mining of complex networks using Giraph

Farhangi Maleki, E.; Ghadiri, N.; Lotfi Shahreza, M.; Maleki, Z.

10.1101/477463 — bioinformatics — Posted on 2019-11-15

1872 Parallel clines in a quantitative trait in butterfly co-mimics species despite different levels of genomic divergence and selection

Curran, E. V.; Stankowski, S.; Pardo-Diaz, C.; Salazar, C.; Linares, M.; Nadeau, N. J.

10.1101/842708 — evolutionary biology — Posted on 2019-11-15

1873 Selective K-ATP channel-dependent loss of pacemaking in vulnerable nigrostriatal dopamine neurons by α-synuclein aggregates

Thakur, P.; Luk, K. C.; Roeper, J.

10.1101/842344 — neuroscience — Posted on 2019-11-15

1874 Foraging fruit flies mix navigational and learning-based decision-making strategies

Seidenbecher, S. E.; Sanders, J. I.; von Philipsborn, A. C.; Kvitsiani, D.

10.1101/842096 — neuroscience — Posted on 2019-11-15

1875 Spiking Recurrent Networks as a Model to Probe Neuronal Timescales Specific to Working Memory

Kim, R.; Sejnowski, T. J.

10.1101/842302 — neuroscience — Posted on 2019-11-15

1876 Strong information-limiting correlations in early visual areas

Montijn, J. S.; Liu, R. G.; Aschner, A.; Kohn, A.; Latham, P. E.; Pouget, A.

10.1101/842724 — neuroscience — Posted on 2019-11-15

1877 Evaluation of 3D markerless motion capture accuracy using OpenPose with multiple video cameras

Nakano, N.; Sakura, T.; Ueda, K.; Omura, L.; Kimura, A.; Iino, Y.; Fukashiro, S.; Yoshioka, S.

10.1101/842492 — neuroscience — Posted on 2019-11-15

1878 Junctophilin-4 is essential for signalling at plasma membrane-endoplasmic reticulum junctions in sensory neurons

Hogea, A.; Shah, S.; Johns, F.; Carver, C. M.; Hao, H.; Liang, C.; Huang, D.; Du, X.; Gamper, N.

10.1101/842476 — neuroscience — Posted on 2019-11-15

1879 Sex differences in Variability of Brain Structure Across the Lifespan

Forde, N. J.; Jeyachandra, J.; Joseph, M.; Jacobs, G. R.; Dickie, E. W.; Satterthwaite, T. D.; Shinohara, R. T.; Ameis, S. H.; Voineskos, A. N.

10.1101/842567 — neuroscience — Posted on 2019-11-15

1880 Midbrain activity supports high-level visual properties in primate temporal cortex

Bogadhi, A. R.; Katz, L. N.; Bollimunta, A.; Leopold, D. A.; Krauzlis, R. J.

10.1101/841155 — neuroscience — Posted on 2019-11-15

1881 Genetic Deletion of TrpV1 and TrpA1 Does not Alter Avoidance of or Patterns of Brainstem Activation to Citric Acid in Mice

Yu, T.; Wilson, C. E.; Stratford, J. M.; Finger, T. E.

10.1101/842112 — neuroscience — Posted on 2019-11-15

1882 Encoding of social exploration by neural ensembles in the insular cortex

Miura, I.; Sato, M.; Kunori, N.; Overton, E.; Nakai, J.; Kawamata, T.; Nakai, N.; Takumi, T.

10.1101/843490 — neuroscience — Posted on 2019-11-15

1883 Blocking mitochondrial pyruvate import causes energy wasting via futile lipid cycling in brown fat

Veliova, M.; Mendes Ferreira, C.; Benador, I. Y.; Jones, A. E.; Desousa, B. R.; Mahdaviani, K.; Acin-Perez, R.; Petcherski, A.; Divakaruni, A. S.; Prentki, M.; Corkey, B. E.; Liesa, M.; Oliveira, M. F.; Shirihai, O. S.

10.1101/841551 — biochemistry — Posted on 2019-11-15

1884 Cellular Fitness Phenotype of Cancer Target Genes in Repurposing Cancer Therapeutics

George, B.; Mukundan, P. P.; Paul, A. M.; Leitzel, K.; Ali, S. M.; Sandiford, O.; Lipton, A.; Rameshwar, P.; Hortobagyi, G. N.; Pillai, R. M.; Kumar, R.

10.1101/840975 — cancer biology — Posted on 2019-11-15

1885 Diffusion of cultural innovation depends on demography: testing an epidemiological model of cultural diffusion with a global dataset of rock art sites and climate-based estimates of ancient population densities

Walker, R.; Eriksson, A.; Ruiz, C. M.; Newton, T. H.; Casalegno, F.

10.1101/705137 — paleontology — Posted on 2019-11-15

1886 Cell volume homeostatically controls the rDNA repeat copy number and rRNA synthesis rate in yeast

Perez-Ortin, J. E.; Mena, A.; Barba-Aliaga, M.; Alonso-Monge, R.; Singh, A.; Chavez, S.; Garcia-Martinez, J.

10.1101/841304 — molecular biology — Posted on 2019-11-15

1887 A novel metabarcoded DNA sequencing tool for the detection of Plasmodium species in malaria positive patients

Wahab, A.; Shaukat, A.; Ali, Q.; Hussain, M.; Khan, T. A.; Khan, M. A. U.; Rashid, I.; Saleem, M. A.; Evans, M.; Sargison, N.; Chaudhry, U.

10.1101/801175 — genetics — Posted on 2019-11-15

1888 Candidate methylation sites associated with endocrine therapy resistance in the TCGA ER+/HER2- breast cancer cohort

Soleimani Dodaran, M.; Borgoni, S.; Sofyali, E.; Verschure, P. J.; Wiemann, S.; Moerland, P. D.; van Kampen, A. H. C.

10.1101/826198 — bioinformatics — Posted on 2019-11-15

1889 Host gill attachment enables blood-feeding by the salmon louse (Lepeophtheirus salmonis) chalimus larvae and alters parasite development and transcriptome

Heggland, E. I.; Dondrup, M.; Nilsen, F.; Eichner, C.

10.1101/815316 — bioinformatics — Posted on 2019-11-15

1890 Compilation of 29-year postmortem examinations identifies major shifts in equine parasite prevalence from 2000 onwards

Salle, G.; Guillot, J.; Tapprest, J.; Foucher, N.; Sevin, C.; Laugier, C.

10.1101/756254 — zoology — Posted on 2019-11-15

1891 Uncovering tissue-specific binding features from differential deep learning

Phuycharoen, M.; Zarrineh, P.; Bridoux, L.; Amin, S.; Losa, M.; Chen, K.; Bobola, N.; Rattray, M.

10.1101/606269 — bioinformatics — Posted on 2019-11-15

1892 Concurrent lipidomics and proteomics on malignant plasma cells from multiple myeloma patients: Probing the lipid metabolome

Mohamed, A.; Collins, J.; Jiang, H.; Molendijk, J.; Stoll, T.; Torta, F.; Wenk, M. R.; Bird, R. J.; Marlton, P.; Mollee, P.; Markey, K. A.; Hill, M. M.

10.1101/702993 — systems biology — Posted on 2019-11-15

1893 Rationally inattentive intertemporal choice

Gershman, S. J.; Bhui, R.

10.1101/680652 — animal behavior and cognition — Posted on 2019-11-15

1894 Targeting cardiac myocyte Na+ pump function with β3 adrenergic agonist in rabbits and patients with severe congestive heart failure

Fry, N. A. S.; Liu, C.-C.; Garcia, A.; Hamilton, E. J.; Karimi Galougahi, K.; Kim, Y. J.; Harris, J. L.; Nelson, G. I. C.; Whalley, D. W.; Bundgaard, H.; Rasmussen, H. H.

10.1101/804245 — physiology — Posted on 2019-11-15

1895 Misfolded α-synuclein causes hyperactive respiration without functional deficit in live neuroblastoma cells

Ugalde, C.; Annesley, S.; Gordon, S.; Mroczek, K.; Perugini, M. A.; Lawson, V.; Fisher, P.; Finkelstein, D.; Hill, A.

10.1101/663815 — neuroscience — Posted on 2019-11-15

1896 Structural changes in secondary, but not primary, sensory cortex in individuals with congenital olfactory sensory loss

Peter, M. G.; Martensson, G.; Postma, E. M.; Engström Nordin, L.; Westman, E.; Boesveldt, S.; Lundström, J. N.

10.1101/760793 — neuroscience — Posted on 2019-11-15

1897 Identification of suitable reference genes for qPCR expression analysis on the gonads of the invasive mussel Limnoperna fortunei

Americo, J. A.; Guerreiro, L. T. A.; Gondim, T. S.; da Cunha, Y. R.; Wajsenzon, I. J. R.; Afonso, L. F.; Soares-Souza, G. B.; Rebelo, M. d. F.

10.1101/835447 — molecular biology — Posted on 2019-11-15

1898 Synechocystis KaiC3 displays temperature and KaiB dependent ATPase activity and is important for growth in darkness

Wiegard, A.; Kobler, C.; Oyama, K.; Dorrich, A. K.; Azai, C.; Terauchi, K.; Wilde, A.; Axmann, I. M.

10.1101/700500 — microbiology — Posted on 2019-11-15

1899 Systematic genetic analysis of the MHC region reveals mechanistic underpinnings of HLA type associations with disease

D'Antonio, M.; Reyna, J.; Jakubosky, D.; Donovan, M. K. R.; Bonder, M.-J.; Matsui, H.; Stegle, O.; Nariai, N.; D'Antonio-Chronowska, A.; Frazer, K. A.

10.1101/564161 — genomics — Posted on 2019-11-15

1900 The current obesity 'epidemic': segregation of familial genetic risk in NHANES cohort supports a major role for large genetic effects

Jenkins, A. B.; Batterham, M.; Campbell, L. V.

10.1101/749606 — genetics — Posted on 2019-11-15

1901 Transcriptome-wide transmission disequilibrium analysis identifies novel risk genes for autism spectrum disorder

Huang, K.; Wu, Y.; Shin, J.; Zheng, Y.; Fotuhi Siahpirani, A.; Lin, Y.; Ni, Z.; Chen, J.; You, J.; Keles, S.; Wang, D.; Roy, S.; Lu, Q.

10.1101/835678 — genetics — Posted on 2019-11-15

1902 Relating the strength of density dependence and the spatial distribution of individuals

Brush, M. J.; Harte, J.

10.1101/827238 — ecology — Posted on 2019-11-15

1903 CHD4 regulates PADI1 and PADI3 expression linking pyruvate kinase M2 citrullination to glycolysis and proliferation.

Davidson, I.; Coassolo, S.; Davidson, G.; Negroni, L.; Gambi, G.; Daujat, S.; Romier, C.

10.1101/718486 — cancer biology — Posted on 2019-11-15

1904 WACS: Improving Peak Calling by Optimally Weighting Controls

Awdeh, A.; Turcotte, M.; Perkins, T. J.

10.1101/582650 — bioinformatics — Posted on 2019-11-15

1905 Pilot study of EVIDENCE: High diagnostic yield and clinical utility of whole exome sequencing using an automated interpretation system for patients with suspected genetic disorders

Seo, G. H.; Kim, T.; Park, J.-Y.; Lee, J.; Kim, S.; Won, D.-g.; Oh, A.; Lee, Y.; Choi, I. H.; Choi, J.; Lee, H.; Kang, H. G.; Cho, H. Y.; Cho, M. H.; Kim, Y. J.; Yoon, Y. H.; Eun, B.-L.; Desnick, R. J.; Keum, C.; Lee, B. h.

10.1101/628438 — genetics — Posted on 2019-11-15

1906 Inspiratory muscle training in young, race-fit Thoroughbred racehorses during a period of detraining

Katz, L. M.; Stallard, J.; Holtby, A.; Hill, E. W.; Allen, K.; Sweeney, J.

10.1101/843417 — physiology — Posted on 2019-11-14

1907 Immunocapture of dsRNA-bound proteins provides insight into Tobacco rattle virus replication complexes

Incarbone, M.; Monsion, B.; Kuhn, L.; Scheer, H.; Poignavent, V.; Dunoyer, P.; Ritzenthaler, C.

10.1101/842666 — microbiology — Posted on 2019-11-14

1908 Vortex fluidics-mediated DNA rescue from formalin-fixed museum specimens

Totoiu, C. A.; Phillips, J. M.; Reese, A. T.; Majumdar, S.; Girguis, P. R.; Raston, C. L.; Weiss, G.

10.1101/842625 — biochemistry — Posted on 2019-11-14

1909 The Absence of Universally-Conserved Protein-coding Genes

Tan, C.

10.1101/842633 — genomics — Posted on 2019-11-14

1910 Genome reconstruction of the non-culturable spinach downy mildew Peronospora effusa by metagenome filtering

Klein, J.; Neilen, M.; van Verk, M.; Van den Ackerveken, G.; Dutilh, B. E.

10.1101/842658 — genomics — Posted on 2019-11-14

1911 Inversions shape the divergence of Drosophila pseudoobscura and D. persimilis on multiple timescales

Korunes, K. L.; Machado, C. A.; Noor, M. A. F.

10.1101/842047 — evolutionary biology — Posted on 2019-11-14

1912 Cell type and cortex-specific RNA editing in single human neurons informs neuropsychiatric disorders

Ansell, B. R. E.; Thomas, S. N.; Munro, J. E.; Freytag, S.; Bahlo, M.

10.1101/840892 — neuroscience — Posted on 2019-11-14

1913 The WIPE assay for selection and elimination of HIV-1 provirus in vitro using latency-reversing agents

Matsuda, K.; Islam, S.; Tsuchiya, K.; Tan, B. J. Y.; Hattori, S.-i.; Katsuya, H.; Miyazato, P.; Matsuo, M.; Delino, N. S.; Gatanaga, H.; Oka, S.; Yoshimura, K.; Matsushita, S.; Mitsuya, H.; Satou, Y.; Maeda, K.

10.1101/842419 — microbiology — Posted on 2019-11-14

1914 Human pseudoislet system enables detection of differences in G-protein-coupled-receptor signaling pathways between α and β cells

Walker, J. T.; Haliyur, R.; Nelson, H. A.; Ishahak, M.; Poffenberger, G.; Aramandla, R.; Reihsmann, C.; Luchsinger, J. R.; Saunders, D. C.; Wang, P.; Garcia-Ocana, A.; Bottino, R.; Agarwal, A.; Powers, A. C.; Brissova, M.

10.1101/842989 — cell biology — Posted on 2019-11-14

1915 Allosteric Regulation of Vitamin K2 Biosynthesis in a Human Pathogen

Bashiri, G.; Nigon, L. V.; Jirgis, E. N. M.; Ho, N. A. T.; Stanborough, T.; Dawes, S. S.; Baker, E. N.; Bulloch, E. M. M.; Johnston, J. M.

10.1101/841569 — biochemistry — Posted on 2019-11-14

1916 Estradiol promotes and progesterone reduces anxiety-like behavior produced by nicotine withdrawal in rats

Flores, R. J.; Cruz, B.; Uribe, K. P.; Correa, V. L.; Arreguin, M. C.; Carcoba, L. M.; Mendez, I. A.; O'Dell, L. E.

10.1101/842252 — animal behavior and cognition — Posted on 2019-11-14

1917 Rapid, selective and single cell electrical detection of antibiotic resistant bacteria

Kumar, N.; Wang, W.; Ortiz-Marquez, J. C.; Catalano, M.; Gray, M.; Biglari, N.; Hikari, K.; Ling, X.; Gao, J.; van Opijnen, T.; Burch, K. S.

10.1101/842187 — microbiology — Posted on 2019-11-14

1918 Assessing the shared variation among high-dimensional data matrices: a modified version of the Procrustean correlation coefficient

Coissac, E.; Gonindard-Melodelima, C.

10.1101/842070 — bioinformatics — Posted on 2019-11-14

1919 SharpTNI: Counting and Sampling Parsimonious Transmission Networks under a Weak Bottleneck

Sashittal, P.; El-Kebir, M.

10.1101/842237 — bioinformatics — Posted on 2019-11-14

1920 Subcellular localization of the immunoregulatory protein MACIR by TNPO1 is mediated by a C terminal PY motif

McGauran, G.; Dorris, E. R.; Borza, R.; Morgan, N.; Shields, D. C.; Matallanas, D.; Wilson, A. G.; o'connell, d. j.

10.1101/841999 — biochemistry — Posted on 2019-11-14

1921 Reproducible observations revealing patterns of the default mode network underlie rumination

Chen, X.; Chen, N.-X.; Shen, Y.-Q.; Li, H.-X.; Li, L.; Lu, B.; Zhu, Z.-C.; Fan, Z.; Yan, C.-G.

10.1101/841239 — neuroscience — Posted on 2019-11-14

1922 Neural Gene Network Constructor: A Neural Based Model for Reconstructing Gene Regulatory Network

Zhang, Z.; Wang, L.; Wang, S.; Tao, R.; Xiao, J.; Mou, M.; Cai, J.; Zhang, J.

10.1101/842369 — bioinformatics — Posted on 2019-11-14

1923 EEG microstate complexity for aiding early diagnosis of Alzheimer's disease

Tait, L.; Tamagnini, F.; Stothart, G.; Barvas, E.; Monaldini, C.; Frusciante, R.; Volpini, M.; Guttmann, S.; Coulthard, E.; Brown, J. T.; Kazanina, N.; Goodfellow, M.

10.1101/833244 — neuroscience — Posted on 2019-11-14

1924 Deletion of cftr leads to an excessive neutrophilic response and defective tissue repair in a zebrafish model of sterile inflammation

Bernut, A.; Loynes, C. A.; Floto, R. A.; Renshaw, S. A.

10.1101/842195 — immunology — Posted on 2019-11-14

1925 Genome analysis of two Lactobacillus plantarum strains, LLY-606 and pc-26, for evaluating their potential as probiotics

Su, D.; Liang, L.; Li, Z.; Lin, Q.; Peng, C.; Lei, X.; liu, s.

10.1101/841163 — genomics — Posted on 2019-11-14

1926 IgE receptor polymorphism predicts divergent, sex-specific inflammatory modes and fitness costs in a wild rodent

Wanelik, K. M.; Begon, M.; Bradley, J. E.; Friberg, I. M.; Jackson, J. A.; Taylor, C. H.; Paterson, S.

10.1101/841825 — ecology — Posted on 2019-11-14

1927 Minimal Barriers to Invasion During Human Colorectal Tumor Growth

Ryser, M. D.; Mallo, D.; Hall, A.; Hardman, T.; King, L. M.; Sorribes, I. C.; Maley, C. C.; Marks, J. R.; Hwang, E. S.; Shibata, D.

10.1101/842203 — cancer biology — Posted on 2019-11-14

1928 Transneuronal delivery of designer-cytokine enables functional recovery after complete spinal cord injury

Leibinger, M.; Zeitler, C.; Gobrecht, P.; Andreadaki, A.; Fischer, D.

10.1101/831271 — neuroscience — Posted on 2019-11-14

1929 Distinct representational structure and spatial distribution for visual encoding and recall

Bainbridge, W. A.; Hall, E. H.; Baker, C. I.

10.1101/842120 — neuroscience — Posted on 2019-11-14

1930 Towards a scaled-up T cell-mediated cytotoxicity assay in 3D cell culture using microscopy

Gottschalk, E.; Czech, E.; Aksoy, B. A.; Aksoy, P.; Hammerbacher, J.

10.1101/842039 — immunology — Posted on 2019-11-14

1931 Dimensions of passerine biodiversity along an elevational gradient: a nexus for historical biogeography and contemporary ecology

Burgio, K. R.; Presley, S. J.; Cisneros, L. M.; Davis, K. E.; Dreiss, L. M.; Klingbeil, B. T.; Willig, M. R.

10.1101/842138 — ecology — Posted on 2019-11-14

1932 Combined modulation of SHH and FGF signaling is crucial for maintenance of the neocortical progenitor specification program

Yabut, O. R.; Ng, H.-X.; Yoon, K.; Gomez, H. G.; Arela, J. C.; Pleasure, S.

10.1101/841932 — developmental biology — Posted on 2019-11-14

1933 Protein structure featurization via standard image classification neural networks

Sikosek, T.

10.1101/841783 — bioinformatics — Posted on 2019-11-14

1934 Genes derived from ancient polyploidy have higher genetic diversity and are associated with domestication in Brassica rapa

Qi, X.; An, H.; Hall, T. E.; Di, C.; Blischak, P.; Pires, J. C.; Barker, M. S.

10.1101/842351 — plant biology — Posted on 2019-11-14

1935 Specific hippocampal interneurons shape consolidation of recognition memory

Oliveira da Cruz, J. F.; Busquets-Garcia, A.; Zhao, Z.; Varilh, M.; Lavanco, G.; Bellocchio, L.; Robin, L.; Cannich, A.; Julio-Kalajzic, F.; Drago, F.; Marsicano, G.; Soria-Gomez, E.

10.1101/842021 — neuroscience — Posted on 2019-11-14

1936 Application of long-read sequencing for robust identification of correct alleles in genome edited animals

McCabe, C. V.; Codner, G. F.; Allan, A. J.; Caulder, A.; Christou, S.; Loeffler, J.; Mackenzie, M.; Malzer, E.; Mianne, J.; Pike, F. J.; Hutchison, M.; Stewart, M. E.; Gates, H.; Wells, S.; Sanderson, N. D.; Teboul, L.

10.1101/838193 — molecular biology — Posted on 2019-11-14

1937 Species-level microbiome composition of activated sludge - introducing the MiDAS 3 ecosystem-specific reference database and taxonomy

Nierychlo, M.; Andersen, K. S.; Xu, Y.; Green, N.; Albertsen, M.; Dueholm, M. S.; Nielsen, P. H.

10.1101/842393 — microbiology — Posted on 2019-11-14

1938 Quantifying genetic heterogeneity between continental populations for human height and body mass index

Guo, J.; Bakshi, A.; Wang, Y.; Jiang, L.; Yengo, L.; Goddard, M. E.; Visscher, P. M.; Yang, J.

10.1101/839373 — genetics — Posted on 2019-11-14

1939 AMELIE 2 speeds up Mendelian diagnosis by matching patient phenotype & genotype to primary literature

Birgmeier, J.; Haeussler, M.; Deisseroth, C. A.; Steinberg, E. H.; Jagadeesh, K. A.; Ratner, A. J.; Guturu, H.; Wenger, A. M.; Diekhans, M. E.; Stenson, P. D.; Cooper, D. N.; Re, C. M.; Center, T. M.; Beggs, A. H.; Bernstein, J. A.; Bejerano, G.

10.1101/839878 — genetics — Posted on 2019-11-14

1940 EVALUATING SPECIES INTERACTIONS AS A DRIVER OF PHYTOPHAGOUS INSECT DIVERGENCE

de Medeiros, B. A. S.; Farrell, B. D.

10.1101/842153 — evolutionary biology — Posted on 2019-11-14

1941 Evolving Transcriptomic Signature of Human Pluripotent Stem Cell-Derived Retinal Pigment Epithelium Cells With Age

Lidgerwood, G. E.; Senabouth, A.; Smith-Anttila, C. J. A.; Gnanasambandapillai, V.; Kaczorowski, D. C.; Amann-Zalcenstein, D.; Fletcher, E. L.; Naik, S. H.; Hewitt, A. W.; Powell, J.; Pebay, A.

10.1101/842328 — cell biology — Posted on 2019-11-14

1942 UPCLASS: a Deep Learning-based Classifier for UniProtKB Entry Publications

Teodoro, D.; Knafou, J.; Naderi, N.; Pasche, E.; Gobeill, J.; Arighi, C. N.; Ruch, P.

10.1101/842062 — bioinformatics — Posted on 2019-11-14

1943 Demonstration of RNA interference by bacterial feeding in Stentor polymorphus

Slabodnick, M. M.

10.1101/843128 — cell biology — Posted on 2019-11-14

1944 Motif V acts as a Regulator of Energy Transduction Between the Flavivirus NS3 ATPase and RNA Binding Cleft

DuPont, K. E.; Davidson, R.; McCullagh, M.; Geiss, B. J.

10.1101/842088 — biochemistry — Posted on 2019-11-14

1945 Circulating miR-181 is a prognostic biomarker for amyotrophic lateral sclerosis

Magen, I.; Coenen-Stass, A. M. L.; Yacovzada, N. S.; Grosskreutz, J.; Lu, C.-H.; Greensmith, L.; Malaspina, A.; Fratta, P.; Hornstein, E.

10.1101/833079 — neuroscience — Posted on 2019-11-14

1946 Meaning maps and saliency models based on deep convolutional neural networks are insensitive to image meaning when predicting human fixations

Pedziwiatr, M. A.; Kuemmerer, M.; Wallis, T. S. A.; Bethge, M.; Teufel, C.

10.1101/840256 — neuroscience — Posted on 2019-11-14

1947 Differences in intake of high-fat high-sugar diet are related to variations in central dopamine in humans.

Hartmann, H.; Pauli, L. K.; Janssen, L. K.; Huhn, S.; Ceglarek, U.; Horstmann, A.

10.1101/839647 — neuroscience — Posted on 2019-11-14

1948 Genomic epidemiology of vancomycin 1 resistant Enterococcus faecium (VREfm) in Latin America: Revisiting the global VRE population structure

10.1101/842013 — microbiology — Posted on 2019-11-14

1949 Tfam knockdown results in reduction of mtDNA copy number, OXPHOS deficiency and abnormalities in zebrafish embryos

Otten, A.; Kamps, R.; Lindsey, P.; Gerards, M.; Pendeville Samain, H.; Muller, M.; van Tienen, F.; Smeets, B.

10.1101/843318 — developmental biology — Posted on 2019-11-14

1950 Cell lineage-dependent chiral actomyosin flows drive cellular rearrangements in early development

Pimpale, L.; Middelkoop, T. C.; Mietke, A.; Grill, S. W.

10.1101/842922 — cell biology — Posted on 2019-11-14

1951 Solo: doublet identification via semi-supervised deep learning

Bernstein, N.; Fong, N.; Lam, I.; Roy, M.; Hendrickson, D. G.; Kelley, D. R.

10.1101/841981 — bioinformatics — Posted on 2019-11-14

1952 MeSHHeading2vec: A new method for representing MeSH headings as feature vectors based on graph embedding algorithm

Guo, Z.-H.; You, Z.-H.; Yi, H.-C.; Zheng, K.; Yanbin, W.

10.1101/835637 — bioinformatics — Posted on 2019-11-14

1953 Disruption of the blood brain barrier in 22q11.2 deletion syndrome

Crockett, A. M.; Ryan, S. K.; Hernandez Vasquez, A.; Canning, C.; Kanyuch, N.; Kebir, H.; Ceja, G.; Gesualdi, J.; Viaene, A.; Kapoor, R.; Benallegue, N.; Anderson, S. A.; Alvarez, J. I.

10.1101/824987 — neuroscience — Posted on 2019-11-14

1954 Identification of suitable reference genes for qPCR expression analysis on the gonads of the invasive mussel Limnoperna fortunei

Americo, J. A.; Guerreiro, L. T. A.; Gondim, T. S.; da Cunha, Y. R.; Wajsenzon, I. J. R.; Afonso, L. F.; Soares-Souza, G. B.; Rebelo, M. d. F.

10.1101/835447 — molecular biology — Posted on 2019-11-14

1955 von Willebrand Factor D and EGF Domains is an evolutionarily conserved and required feature of blastemas capable of multi-tissue appendage regeneration

Leigh, N. D.; Sessa, S.; Dragalzew, A. C.; Payzin-Dogru, D.; Sousa, J. F.; Aggouras, A.; Johnson, K.; Dunlap, G. S.; Haas, B. J.; Levin, M.; Schneider, I.; Whited, J. L.

10.1101/842948 — developmental biology — Posted on 2019-11-14

1956 Fate of developmental mechanisms of myocardial plasticity in the postnatal heart

Hatzistergos, K. E.; Durante, M. A.; Valasaki, K.; Harbour, J. W.; Hare, J. M.

10.1101/842864 — developmental biology — Posted on 2019-11-14

1957 Development of a novel preclinical glioblastoma mouse model and therapeutic impact of IRE1 inhibition

Le Reste, P.-J.; Pineau, R.; Samal, J.; Jegou, G.; Lhomond, S.; Gorman, A. M.; Samali, A.; Patterson, J. B.; Zeng, Q.; Pandit, A.; AUBRY, M.; Soriano, N.; Etcheverry, A.; Mosser, J.; Avril, T.; chevet, e.

10.1101/841296 — cancer biology — Posted on 2019-11-14

1958 Advancing clinical cohort selection with genomics analysis on a distributed platform

Smith, J. M.; Lathara, M.; Wright, H.; Hill, B.; Ganapati, N.; Srinivasa, G.; Denny, C. M.

10.1101/841940 — bioinformatics — Posted on 2019-11-14

1959 The left angular gyrus is causally involved in information buffering and context formation: evidence from a narrative reading task

Branzi, F.

10.1101/841478 — neuroscience — Posted on 2019-11-14

1960 Protein prenylation and Hsp40 in thermotolerance of Plasmodium falciparum malaria parasites

Mathews, E. S.; Jezewski, A. J.; Odom John, A. R.

10.1101/842468 — microbiology — Posted on 2019-11-14

1961 Remodeling of Crossbridges Controls Peptidoglycan Crosslinking Levels in Bacterial Cell Walls

Pidgeon, S.; Apostolos, A.; Pires, M. M.

10.1101/840405 — microbiology — Posted on 2019-11-14

1962 Family permutation profiling identifies a dynamic protein domain as functionally tolerant to increased conformational entropy

Atkinson, J. T.; Jones, A. M.; Nanda, V.; Silberg, J. J.

10.1101/840603 — biochemistry — Posted on 2019-11-14

1963 Exposure to nicotine vapor causes short-term increases in impulsive choice in rats.

Flores, R. J.; Alshbool, F. Z.; Giner, P.; O'Dell, L. E.; Mendez, I. A.

10.1101/842005 — animal behavior and cognition — Posted on 2019-11-14

1964 Lateralized expression of cortical perineuronal nets during maternal experience is dependent on MECP2

Lau, B. Y. B.; Layo, D. E.; Emery, B.; Everett, M.; Kumar, A.; Stevenson, P.; Reynolds, K. G.; Cherosky, A.; Bowyer, S.-A. H.; Roth, S.; Fisher, D. G.; McCord, R. P.; Krishnan, K.

10.1101/787267 — neuroscience — Posted on 2019-11-14

1965 Learning cis-regulatory principles of ADAR-based RNA editing from CRISPR-mediated mutagenesis

Liu, X.; Sun, T.; Shcherbina, A.; Li, Q.; Kappel, K.; Jarmoskaite, I.; Ramaswami, G.; Das, R.; Kundaje, A.; Li, J. B.

10.1101/840884 — molecular biology — Posted on 2019-11-14

1966 Transcriptome analysis reveals the importance of the immune system during early pregnancy in sheep.

Pokharel, K.; Peippo, J.; Weldenegodguad, M. B.; Honkatukia, M.; Li, M.-H.; Kantanen, J.

10.1101/673558 — genetics — Posted on 2019-11-14

1967 Astral Microtubules Regulate Formation of the Cytokinetic Cleavage Furrow in Fission Yeast

Dundon, S. E.; Pollard, T. D.

10.1101/843110 — cell biology — Posted on 2019-11-14

1968 Structural basis for divergent and convergent evolution of catalytic machineries in plant AAAD proteins

Torrens-Spence, M. P.; Chiang, Y.-C.; Smith, T.; Vicent, M. A.; Wang, Y.; Weng, J.-K.

10.1101/404970 — biochemistry — Posted on 2019-11-14

1969 A novel metric reveals previously unrecognized distortion in dimensionality reduction of scRNA-Seq data

Cooley, S. M.; Hamilton, T.; Deeds, E. J.; Ray, J. C. J.

10.1101/689851 — bioinformatics — Posted on 2019-11-14

1970 Bacterial glycogen provides short-term benefits in changing environments

Sekar, K.; Linker, S. M.; Nguyen, J.; Gruenhagen, A.; Stocker, R.; Sauer, U.

10.1101/841718 — microbiology — Posted on 2019-11-14

1971 Early-life gut dysbiosis linked to mass mortality in ostriches

Videvall, E.; Song, S. J.; Bensch, H. M.; Strandh, M.; Engelbrecht, A.; Serfontein, N.; Hellgren, O.; Olivier, A.; Cloete, S.; Knight, R.; Cornwallis, C. K.

10.1101/841742 — microbiology — Posted on 2019-11-14

1972 Towards a potential landscape framework of microbiome dynamics

Chang, W. K.; VanInsberghe, D.; Kelly, L.

10.1101/584201 — systems biology — Posted on 2019-11-14

1973 Complex spikes encode reward expectation signals during visuomotor association learning

Sendhilnathan, N.; Ipata, A. E.; Goldberg, M. E.

10.1101/841858 — neuroscience — Posted on 2019-11-14

1974 Tumor microtubes connect pancreatic cancer cells in an Arp2/3 complex-dependent manner

Latario, C. J.; Schoenfeld, L. W.; Howarth, C. L.; Pickrell, L. E.; Begum, F.; Fischer, D. A.; Grbovic-Huezo, O.; Leach, S. D.; Sanchez, Y.; Smith, K. D.; Higgs, H. N.

10.1101/841841 — cell biology — Posted on 2019-11-14

1975 Gli1+ mesenchymal stromal cells modulate epithelial metaplasia in lung fibrosis

Cassandras, M.; Wang, C.; Kathiriya, J.; Tsukui, T.; Matatia, P.; Matthay, M.; Wolters, P.; Molofsky, A.; Sheppard, D.; Chapman, H.; Peng, T.

10.1101/841957 — cell biology — Posted on 2019-11-14

1976 Determining the content of vesicles captured by golgin tethers using LOPIT-DC

Shin, J. J. H.; Munro, S.; Lilley, K. S.; Crook, O. M.; Borgeaud, A.; Cattin-Ortola, J.; Peak-Chew, S.-Y.; Chadwick, J.

10.1101/841965 — cell biology — Posted on 2019-11-14

1977 Comparative microbial diversity across temperature gradients in hot springs from Yellowstone and Iceland

Podar, P. T.; Yang, Z. K.; Bjornsdottir, S. H.; Podar, M.

10.1101/841700 — microbiology — Posted on 2019-11-14

1978 Quantifying within-host diversity of H5N1 influenza viruses in humans and poultry in Cambodia

Moncla, L. H.; Bedford, T.; Dussart, P.; Horm, S. V.; Rith, S.; Buchy, P.; Karlsson, E. A.; Li, L.; Liu, Y.; Zhu, H.; Guan, Y.; Friedrich, T. C.; Horwood, P. F.

10.1101/683151 — microbiology — Posted on 2019-11-14

1979 Single-cell immune repertoire tracing identifies rituximab refractory B cells that emerge during relapse

Jiang, R.; Fichtner, M. L.; Hoehn, K. B.; Stathopoulos, P.; Nowak, R. J.; Kleinstein, S.; OConnor, K. C.

10.1101/840389 — immunology — Posted on 2019-11-14

1980 Experts, but not novices, exhibit StartReact indicating experts use the reticulospinal system more than novices

Bartels, B. M.; Quezada, M. J.; Ravichandran, V. J.; Honeycutt, C. F.

10.1101/841791 — neuroscience — Posted on 2019-11-14

1981 Combining multiple functional connectivity methods to improve causal inferences

Sanchez-Romero, R.; Cole, M. W.

10.1101/841890 — neuroscience — Posted on 2019-11-14

1982 G-Protein signaling increases germline stem cell activity in Drosophila males in response to multiple rounds of mating

Malpe, M.; McSwain, L. F.; Kudyba, K.; Ng, C.; Nicholson, J.; Brady, M.; Qian, Y.; Choksi, V.; Hudson, A. G.; Parrott, B. B.; Schulz, C.

10.1101/433623 — developmental biology — Posted on 2019-11-14

1983 Growth Cone-Localized Microtubule Organizing Center Establishes Microtubule Orientation in Dendrites

liang, x.; Kokes, M.; Fetter, R. D.; Pickett, M. A.; Sallee, M. D.; Moore, A.; Feldman, J.; Shen, K.

10.1101/841759 — cell biology — Posted on 2019-11-14

1984 Genomic architecture of artificially and sexually selected traits in a wild cervid

Anderson, S. J.; Cote, S. D.; Richard, J. H.; Shafer, A. B.

10.1101/841528 — genomics — Posted on 2019-11-14

1985 Nonlinear stimulus representations in neural circuits with approximate excitatory-inhibitory balance

Baker, C.; Zhu, V.; Rosenbaum, R.

10.1101/841684 — neuroscience — Posted on 2019-11-14

1986 Disruption of relapse to alcohol seeking by aversive counterconditioning following memory retrieval

Goltseker, K.; Handrus, H.; Barak, S.

10.1101/841536 — neuroscience — Posted on 2019-11-14

1987 Bacterial glycogen provides short-term benefits in changing environments

Sekar, K.; Linker, S. M.; Ngueyn, J.; Gruenhagen, A.; Stocker, R.; Sauer, U.

10.1101/841718 — microbiology — Posted on 2019-11-14

1988 LMSM: a modular approach for identifying lncRNA related miRNA sponge modules in breast cancer

Zhang, J.; Xu, T.; Liu, L.; Zhang, W.; Zhao, C.; Li, S.; Li, J.; Rao, N.; Le, T.

10.1101/841502 — bioinformatics — Posted on 2019-11-14

1989 A cooperative network of molecular "hot spots" highlights the complexity of LH3 collagen glycosyltransferase activities

Chiapparino, A.; De Giorgi, F.; Scietti, L.; Faravelli, S.; Roscioli, T.; Forneris, F.

10.1101/841486 — biochemistry — Posted on 2019-11-14

1990 Cell volume homeostatically controls the rDNA repeat copy number and rRNA synthesis rate in yeast

Perez-Ortin, J. E.

10.1101/841304 — molecular biology — Posted on 2019-11-14

1991 Kinobead profiling reveals reprogramming of B-cell receptor signaling in response to therapy within primary CLL cells.

Linley, A. J.; Griffin, R.; Cicconi, S.; D'Avola, A.; MacEwan, D. J.; Pettitt, A. R.; Kalakonda, N.; Packham, G.; Prior, I.; Slupsky, J.

10.1101/841312 — cancer biology — Posted on 2019-11-14

1992 Breaking Medical Data Sharing Boundaries by EmployingArtificial Radiographs

Han, T.; Nebelung, S.; Haarburger, C.; Horst, N.; Reinartz, S.; Merhof, D.; Kiessling, F.; Schulz, V.; Truhn, D.

10.1101/841619 — bioinformatics — Posted on 2019-11-14

1993 To give or not to take - insular cortex subserves framing-induced boosts in generosity during social discounting

Sellitto, M.; Schweda, A.; Weber, B.; Kalenscher, T.

10.1101/841338 — neuroscience — Posted on 2019-11-14

1994 Moving by thoughts alone? Amount of finger movement and pendulum length determine success in the Chevreul Pendulum Illusion

Cantergi, D.; Awasthi, B.; Friedman, J.

10.1101/841445 — neuroscience — Posted on 2019-11-14

1995 Spike afterpotentials shape the in-vivo burst activity of principal cells in medial entorhinal cortex

Csordas, D. E.; Fischer, C.; Nagele, J.; Stemmler, M. B.; Herz, A.

10.1101/841346 — neuroscience — Posted on 2019-11-14

1996 Functional insights from the GC-poor genomes of two aphid parasitoids, Aphidius ervi and Lysiphlebus fabarum

Dennis, A. B.; Ballesteros, G. I.; Robin, S.; Schrader, L.; Bast, J.; Berghöfer, J.; Beukeboom, L.; Belghazi, M.; Bretaudeau, A.; Büllesbach, J.; Cash, E.; Colinet, D.; Dumas, Z.; Falabella, P.; gatti, j.-l.; Geuverink, E.; Gibson, J. D.; Hertäg, C.; Hartmann, S.; Jacquin-Joly, E.; Lammers, M.; Lavandero, B. I.; Lindenbaum, I.; Massardier-Galata, L.; Meslin, C.; Montagne, N.; Pak, N.; Poirie, M.; Salvia, R.; Smith, C. R.; Tagu, D.; Tares, S.; Vogel, H.; Schwander, T.; Simon, J.-C.; Figueroa, C. C.; Vorburger, C.; Legeai, F.; Gadau, J.

10.1101/841288 — genomics — Posted on 2019-11-14

1997 Investigating higher order interactions in single cell data with scHOT

Ghazanfar, S.; Lin, Y.; Su, X.; Lin, D. M.; Patrick, E.; Han, Z. G.; Marioni, J. C.; Yang, J. Y. H.

10.1101/841593 — bioinformatics — Posted on 2019-11-14

1998 LESSeq: Local event-based analysis of alternative splicing using RNA-Seq data

Leng, J.; Cameron, C. J.; Oh, S.; Khurana, E.; Noonan, J. P.; Gerstein, M. B.

10.1101/841494 — bioinformatics — Posted on 2019-11-14

1999 Neuromodulation of astrocytic K+ clearance

Bellot Saez, A.; Kekesi, O. S.; Ben-Abu, Y.; Morley, J. W.; Buskila, Y.

10.1101/841643 — neuroscience — Posted on 2019-11-14

2000 The genome of the zoonotic malaria parasite Plasmodium simium reveals adaptations to host-switching

Mourier, T.; de Alvarenga, D. A. M.; Kaushik, A.; de Pina-Costa, A.; Guzman-Vega, F. J.; Douvropoulou, O.; Guan, Q.; Forrester, S.; de Abreu, F. V. S.; Junior, C. B.; Junior, J. C. d. S.; Hirano, Z. M. B.; Pissinatti, A.; Moreira, S. B.; Ferreira-da-Cruz, M. d. F.; de Oliveira, R. L.; Arold, S. T.; Jeffares, D. C.; Brasil, P.; de Brito, C. F. A.; Culleton, R.; Daniel-Ribeiro, C. T.; Pain, A.

10.1101/841171 — genomics — Posted on 2019-11-14

2001 Admixture/fine-mapping in Brazilians reveals a West African associated potential regulatory variant (rs114066381) with a strong female-specific effect on body mass- and fat mass-indexes

Scliar, M. O.; Sant Anna, H. P.; Santolalla, M. L.; Leal, T. P.; Araujo, N. M.; Alvim, I.; Borda, V.; Magalhaes, W. C.; Gouveia, M. H.; Lyra, R.; Machado, M.; Michelin, L.; Rodrigues, M. R.; Araujo, G. S.; Kehdy, F. S.; Zolini, C.; Peixoto, S. V.; Luizon, M.; Lobo, F. P.; Naslavsky, M. S.; Yamamoto, G. L.; Duarte, Y. A.; Hansen, M. E.; Norris, S. A.; Gilman, R. H.; Guio, H.; Hsing, A.; Mbulaiteye, S. M.; Mensah, J.; Dutil, J.; Yeager, M.; Yeboah, E.; Tishkoff, S. A.; Choudhury, A.; Ramsay, M.; Passos-Bueno, M. R.; Zatz, M.; O'Connor, T. D.; Pereira, A. C.; Barreto, M. L.; Lima-Costa, M. F.; Ho

10.1101/827311 — genetics — Posted on 2019-11-14

2002 Efficient toolkit implementing best practices for principal component analysis of population genetic data

Prive, F.; Luu, K.; Blum, M. G. B.; McGrath, J. J.; Vilhjalmsson, B. J.

10.1101/841452 — genetics — Posted on 2019-11-14

2003 The early local and systemic Type I interferon responses to ultraviolet B light exposure are cGAS dependent.

Skopelja-Gardner, S.; An, J.; Tai, J.; Tanaka, L.; Sun, X.; Hermanson, P.; Kawasumi, M.; Green, R.; Gale, M.; Kalus, A.; Werth, V. P.; Elkon, K. B.

10.1101/835132 — immunology — Posted on 2019-11-14

2004 How important is it to consider lineage diversification heterogeneity in macroevolutionary studies: lessons from the lizard family Liolaemidae

Olave, M.; Avila, L. J.; Sites, J. W.; Morando, M.

10.1101/563635 — evolutionary biology — Posted on 2019-11-14

2005 Trophoblast paracrine signaling regulates placental hematoendothelial niche

Home, P.; Ghosh, A.; Kumar, R. P.; Ganguly, A.; Bhattacharya, B.; Islam, M. R.; Ray, S.; Gunewardena, S.; Paul, S.

10.1101/840660 — developmental biology — Posted on 2019-11-14

2006 Escape from nonsense mediated decay associates with anti-tumor immunogenicity

Litchfield, K.; Reading, J.; Lim, E.; Xu, H.; Liu, P.; Al-Bakir, M.; Wong, S.; Rowan, A.; Funt, S.; Merghoub, T.; Lauss, M.; Svane, I. M.; Jonsson, G.; Herrero, J.; Larkin, J.; Quezada, S. A.; Hellmann, M. D.; Turajlic, S.; Swanton, C.

10.1101/823716 — cancer biology — Posted on 2019-11-14

2007 Top-down modulation of neural envelope tracking: the interplay with behavioral, self-reported and neural measures of listening effort

Decruy, L.; Lesenfants, D.; Vanthornhout, J.; Francart, T.

10.1101/815365 — neuroscience — Posted on 2019-11-14

2008 Active inference under intersensory conflict: Simulation and empirical results

Limanowski, J.; Friston, K.

10.1101/795419 — neuroscience — Posted on 2019-11-14

2009 Theoretical relation between axon initial segment geometry and excitability

Goethals, S.; Brette, R.

10.1101/834671 — neuroscience — Posted on 2019-11-14

2010 Mapping the growth effect of previously hidden ubiquitin alleles using an overexpression based mutational scan

Mavor, D.; Bolon, D. N. A.; Mishra, P.

10.1101/831503 — genetics — Posted on 2019-11-14

2011 Drosophila suzukii wing spot size is robust to developmental temperature

Varon Gonzalez, C.; Fraimout, A.; Debat, V.

10.1101/800417 — ecology — Posted on 2019-11-14

2012 Exon definition facilitates reliable control of alternative splicing in the RON proto-oncogene

Enculescu, M.; Braun, S.; Setty, S. T.; Zarnack, K.; Koenig, J.; Legewie, S.

10.1101/714022 — systems biology — Posted on 2019-11-14

2013 Variance heterogeneity genome-wide mapping for cadmium in bread wheat reveals novel genomic loci and epistatic interactions

Hussain, W.; Campbell, M.; Jarquin, D.; Walia, H.; Morota, G.

10.1101/668087 — genetics — Posted on 2019-11-14

2014 Limited thermal plasticity and geographic divergence in the ovipositor of Drosophila suzukii

Varon Gonzalez, C.; Fraimout, A.; Delapre, A.; Debat, V.; Cornette, R.

10.1101/670356 — developmental biology — Posted on 2019-11-14

2015 Population phenomena inflate genetic associations of complex social traits.

Morris, T. T.; Davies, N. M.; Hemani, G.; Davey Smith, G.

10.1101/630426 — genetics — Posted on 2019-11-14

2016 Human Gene Expression Variability and its Dependence on Methylation and Aging

Bashkeel, N.; Perkins, T.; Kaern, M.; Lee, J.

10.1101/500785 — bioinformatics — Posted on 2019-11-14

2017 ChIPSummitDB: A ChIP-seq-based database of human transcription factor binding sites and the topological arrangements of the proteins bound to them

Czipa, E.; Schiller, M.; Nagy, T.; Kontra, L.; Steiner, L.; Koller, J.; Palne-Szen, O.; Barta, E.

10.1101/652420 — bioinformatics — Posted on 2019-11-14

2018 Negative Cooperativity between Gemin2 and RNA provides Insights into RNA Selection and the SMN Complex's Release in snRNP Assembly

Yi, H.; Mu, L.; Shen, C.; Kong, X.; Wang, Y.; Hou, Y.; Zhang, R.

10.1101/312124 — molecular biology — Posted on 2019-11-14

2019 Differential effects of day-night cues and the circadian clock on the barley transcriptome

Müller, L.; Mombaerts, L.; Pankin, A.; Davis, S. J.; Webb, A. A.; Goncalves, J.; von Korff, M.

10.1101/840322 — plant biology — Posted on 2019-11-14

2020 Cortical state transitions and stimulus response evolve along stiff and sloppy parameter dimensions, respectively

Ponce-Alvarez, A.; Mochol, G.; de la Rocha, J.; Deco, G.

10.1101/839365 — neuroscience — Posted on 2019-11-14

2021 Origin and microenvironment contribute to the sexually dimorphic phenotype and function of peritoneal macrophages.

Bain, C. C.; Gibson, D. A.; Steers, N. J.; Boufea, K.; Louwe, P. A.; Doherty, C.; Huici, V.; Gentek, R.; Magalhaes-Pinto, M.; Bajenoff, M.; Benezech, C.; Dockrell, D.; Saunders, P. T.; Batadar, N.; Jenkins, S. J.

10.1101/837336 — immunology — Posted on 2019-11-14

2022 Effects of social defeat stress and fluoxetine treatment on neurogenesis and behaviour in mice that lack zinc transporter 3 (ZnT3) and vesicular zinc

McAllister, B. B.; Pochakom, A.; Fu, S.; Dyck, R. H.

10.1101/776633 — neuroscience — Posted on 2019-11-14

2023 Coincidence of cholinergic pauses, dopaminergic activation and depolarization drives synaptic plasticity in the striatum

Zhang, Y.-F.; Fisher, S. D.; Oswald, M.; Wickens, J. R.; Reynolds, J. N. J.

10.1101/803536 — neuroscience — Posted on 2019-11-14

2024 The lysine methyltransferase DOT1L controls CD4+ T cell-dependent immunity and inflammation

Scheer, S.; Bramhall, M.; Runting, J.; Russ, B.; Zhang, Q.; Flanigan, S.; Zaini, A.; Ellemor, J.; Rodrigues, G.; Ng, J.; Davidovich, C.; Zaph, C.

10.1101/821348 — immunology — Posted on 2019-11-14

2025 Exome Sequencing in Individuals with Isolated Biliary Atresia

Rajagoapalan, R.; Tsai, E. A.; Grochowski, C. M.; Kelly, S. M.; Loomes, K. M.; Spinner, N. B.; Devoto, M.

10.1101/831768 — genetics — Posted on 2019-11-14

2026 Live Cell Imaging of Single RNA Molecules with Fluorogenic Mango II Arrays

Cawte, A. D.; Unrau, P. J.; Rueda, D. S.

10.1101/840082 — cell biology — Posted on 2019-11-14

2027 Novel function of TRIP6, in brain ciliogenesis

Shukla, S.; Urbanek, P.; Frappart, L.; Haenold, R.; Nagel, S.; Monajembashi, S.; Grigaravicius, P.; Min, W. K.; Tapias, A.; Kassel, O.; Heuer, H.; Wang, Z.-Q.; Ploubidou, A.; Herrlich, P. A.

10.1101/777052 — cell biology — Posted on 2019-11-14

2028 Gonad transcriptome of golden mussel Limnoperna fortunei reveals potential sex differentiation genes

Afonso, L. F.; Americo, J. A.; Soares-Souza, G. B.; Torres, A. L. Q.; Wajsenzon, I. J. R.; Rebelo, M. d. F.

10.1101/818757 — bioinformatics — Posted on 2019-11-14

2029 Delayed suppression normalizes face identity responses in the primate brain

Koyano, K. W.; Jones, A. P.; McMahon, D. B.; Waidmann, E. N.; Russ, B. E.; Leopold, D. A.

10.1101/773689 — neuroscience — Posted on 2019-11-14

2030 Progression from feature-specific brain activity to hippocampal binding during episodic encoding

Cooper, R.; Ritchey, M.

10.1101/735761 — neuroscience — Posted on 2019-11-14

2031 Muscles Recruited During an Isometric Knee Extension Task is Defined by Proprioceptive Feedback

York, G.; Osborne, H.; Sriya, P.; Astill, S.; de Kamps, M.; Chakrabarty, S.

10.1101/802736 — neuroscience — Posted on 2019-11-14

2032 Ultrastructure of light-activated axons following optogenetic stimulation to produce late-phase long-term potentiation

Kuwajima, M.; Ostrovskaya, O. I.; Cao, G.; Weisberg, S. A.; Harris, K. M.; Zemelman, B. V.

10.1101/799890 — neuroscience — Posted on 2019-11-14

2033 Migration of intestinal dendritic cell subsets upon intrinsic and extrinsic TLR3 stimulation

Garcias Lopez, A.; Bekiaris, V.; Müller Luda, K.; Hütter, J.; Getachew Muleta, K.; Nakawesi, J.; Ulmert, I.; Kotarsky, K.; Malissen, B.; O'Keeffe, M.; Holzmann, B.; Agace, W. W.; Lahl, K.

10.1101/785675 — immunology — Posted on 2019-11-14

2034 An exploration of ambigrammatic sequences in narnaviruses

DeRisi, J. L.; Huber, G.; Kistler, A.; Retallack, H.; Wilkinson, M.; Yllanes, D.

10.1101/761890 — genomics — Posted on 2019-11-14

2035 A primary sexual trait involved in courtship in insects: Male genital lobe morphology affects the chance to copulate in Drosophila pachea

Lefevre, B. M.; Catte, D.; Courtier-Orgogozo, V.; Lang, M.

10.1101/816538 — evolutionary biology — Posted on 2019-11-14

2036 Modified covariance beamformer for solving MEG inverse problem in the environment with correlated sources

Kuznetsova, A.; Nurislamova, Y.; Ossadtchi, A.

10.1101/668814 — neuroscience — Posted on 2019-11-14

2037 Multi-resolution localization of causal variants across the genome

Sesia, M.; Katsevich, E.; Bates, S.; Candes, E.; Sabatti, C.

10.1101/631390 — genomics — Posted on 2019-11-14

2038 Assessing the performance of genome-wide association studies for predicting disease risk

Patron, J.; Serra Cayuela, A.; Han, B.; Li, C.; Wishart, D. S.

10.1101/701086 — genomics — Posted on 2019-11-14

2039 convertibleCARs: A chimeric antigen receptor system for flexible control of activity and antigen targeting

Landgraf, K.; Williams, S. R.; Steiger, D.; Gebhart, D.; Lok, S.; Martin, D. W.; Roybal, K. T.; Kim, K. C.

10.1101/696401 — cancer biology — Posted on 2019-11-14

2040 Comparison of silhouette-based reallocation methods for vegetation classification

Lengyel, A.; Roberts, D. W.; Botta-Dukat, Z.

10.1101/630384 — bioinformatics — Posted on 2019-11-14

2041 Categorical Biases in Human Occipitoparietal Cortex

Ester, E. F.; Sprague, T. C.; Serences, J. T.

10.1101/170845 — neuroscience — Posted on 2019-11-14

2042 Understanding psychophysiological interaction and its relations to beta series correlation

Di, X.; Zhang, Z.; Biswal, B. B.

10.1101/322073 — neuroscience — Posted on 2019-11-14

2043 The bounded rationality of probability distortion

Zhang, H.; Ren, X.; Maloney, L. T.

10.1101/662429 — neuroscience — Posted on 2019-11-14

2044 Feedback inhibition and its control in an insect olfactory circuit

Ray, S.; Aldworth, Z. N.; Stopfer, M. A.

10.1101/624528 — neuroscience — Posted on 2019-11-14

2045 Transite: A computational motif-based analysis platform that identifies RNA-binding proteins modulating changes in gene expression

Krismer, K.; Varmeh, S.; Bird, M. A.; Gattinger, A.; Kong, Y. W.; Handly, E. D.; Bernwinkler, T.; Anderson, D. A.; Heinzel, A.; Joughin, B. A.; Cannell, I. G.; Yaffe, M. B.

10.1101/416743 — bioinformatics — Posted on 2019-11-14

2046 The genome of the zoonotic malaria parasite Plasmodium simium reveals adaptions to host-switching

10.1101/841171 — genomics — Posted on 2019-11-13

2047 Comparative Genomics and Full-Length TprK Profiling of Treponema pallidum subsp. pallidum Reinfection

Addetia, A.; Tantalo, L. C.; Lin, M. J.; Xie, H.; Huang, M.-L.; Marra, C.; Greninger, A. L.

10.1101/841395 — microbiology — Posted on 2019-11-13

2048 Trophoblast paracrine signaling regulates placental hematoendothelial niche

Home, P.; Ghosh, A.; Parikshan, R. K.; Ganguly, A.; Bhattacharya, B.; Islam, M. R.; Ray, S.; Gunewardena, S.; Paul, S.

10.1101/840660 — developmental biology — Posted on 2019-11-13

2049 Motor circuit function is stabilized during postembryonic growth by anterograde trans-synaptic Jelly Belly - Anaplastic Lymphoma Kinase signaling

Gaertig, P.-A. R.; Ostrovsky, A. D.; Manhart, L. J.; Giachello, C. N. G.; Kovacevic, T.; Lustig, H.; Chwalla, B.; Cachero, S.; Baines, R. A.; Landgraf, M.; Evers, J. F.

10.1101/841106 — neuroscience — Posted on 2019-11-13

2050 Extracellular vesicles from monocyte/platelet aggregates modulate human atherosclerotic plaque responses

Oggero, S.; de Gaetano, M.; Marcone, S.; Barry, M.; Montero-Melendez, T.; Cooper, D.; Norling, L. V.; Brennan, E.; Godson, C.; Perretti, M.

10.1101/841361 — immunology — Posted on 2019-11-13

2051 Evaluation of Postharvest Storability of Ponkan Mandarins at Different Storage Temperatures Based on Principal Component Analysis

Cai, N.; wan, c.; Chen, J.; Chen, C.

10.1101/841379 — plant biology — Posted on 2019-11-13

2052 Stimulus reliability automatically biases temporal integration of discrete perceptual targets yielding suboptimal decisions

Rangelov, D.; Mattingley, J. B.; West, R.; Reb,

10.1101/841353 — neuroscience — Posted on 2019-11-13

2053 Sequencing-based quantitative mapping of the cellular small RNA landscape

Hu, J. F.; Yim, D.; Huber, S. M.; Bacusmo, J. M.; Ma, D.; DeMott, M. S.; Levine, S. S.; Crecy-Lagard, V. d.; Dedon, P. C.; Cao, B.

10.1101/841130 — molecular biology — Posted on 2019-11-13

2054 Zika virus infects pericytes in the choroid plexus and enters the central nervous system through the blood-cerebrospinal fluid barrier.

Kim, J.; Hetman, M.; Hattab, E. M.; Joiner, J.; Alejandro, B.; Schroten, H.; Ishikawa, H.; Chung, D.

10.1101/841437 — microbiology — Posted on 2019-11-13

2055 Bayesian estimation of Lassa virus epidemiological parameters: implications for spillover prevention using wildlife vaccination

Nuismer, S. L.; Remien, C. H.; Basinski, A.; Varrelman, T.; Layman, N.; Rosenke, K.; Bird, B.; Jarvis, M.; Barry, P.; Fichet-Calvet, E.

10.1101/841403 — ecology — Posted on 2019-11-13

2056 Epithelial Vegfa specifies a distinct endothelial population in the mouse lung

Vila Ellis, L.; Cain, M. P.; Hutchison, V.; Flodby, P.; Crandall, E. D.; Borok, Z.; Zhou, B.; Ostrin, E. J.; Wythe, J. D.; Chen, J.

10.1101/840033 — developmental biology — Posted on 2019-11-13

2057 Systems biology approach identifies functional modules and regulatory hubs related to secondary metabolites accumulation after the transition from autotrophic to heterotrophic growth condition in the microalga

Panahi, B.; Farhadian, M.; Hejazi, M. a.

10.1101/841411 — bioinformatics — Posted on 2019-11-13

2058 HLA class II polymorphism influences the immune response to protective antigen and susceptibility to Bacillus anthracis

Altmann, D. M.; Ascough, S.; Ingram, R.; Chu, K.; Moore, S.; Gallagher, T.; Dyson, H.; Doganay, M.; Metan, G.; Ozkul, Y.; Baillie, L.; Williamson, E. D.; Robinson, J.; Maillere, B.; Boyton, R.

10.1101/841429 — immunology — Posted on 2019-11-13

2059 Seed mass and plant origin interact to determine species germination patterns

Vesela, A.; Dostalek, T.; Rokaya, M.; Munzbergova, Z.

10.1101/841114 — ecology — Posted on 2019-11-13

2060 Critical analysis of the mosquito repellency evoked by the 10-34 kHz recorded animal sounds: The case of the African female A. gambiae s.s

MANG'ARE, P. A.; Gichuki, F. N.; Rotich, S.; Makatiani, J. K.; Wakhu, B. R.

10.1101/841387 — animal behavior and cognition — Posted on 2019-11-13

2061 Extremely widespread parthenogenesis and a trade-off between alternative forms of reproduction in mayflies (Ephemeroptera)

Liegeois, M.; Sartori, M.; Schwander, T.

10.1101/841122 — evolutionary biology — Posted on 2019-11-13

2062 Effects of temperature of plant cultivation on plant palatability modify species response to novel climate

Dostalek, T.; Rokaya, M. B.; Munzbergova, Z.

10.1101/841148 — ecology — Posted on 2019-11-13

2063 Altered updating of bodily and spatial representations following tool-use in Complex Regional Pain Syndrome

Vitterso, A. D.; Buckingham, G.; Halicka, M.; Proulx, M. J.; Bultitude, J. H.

10.1101/841205 — neuroscience — Posted on 2019-11-13

2064 Deep profiling reveals substantial heterogeneity of integration outcomes in CRISPR knock-in experiments

Canaj, H.; Hussmann, J. A.; Li, H.; Beckman, K. A.; Goodrich, L.; Cho, N. H.; Li, Y. J.; Santos, D. A.; McGeever, A.; Stewart, E. M.; Pessino, V.; Mandegar, M. A.; Huang, C.; Gan, L.; Panning, B.; Huang, B.; Weissman, J. S.; Leonetti, M. D.

10.1101/841098 — genomics — Posted on 2019-11-13

2065 Scaling laws in spoken language associated with cognitive functions

Abe, M. S.; Otake-Matsuura, M.

10.1101/841247 — neuroscience — Posted on 2019-11-13

2066 Inter-subject phase synchronization differentiates neural networks underlying physical pain empathy

Xu, L.; Bolt, T. S.; Nomi, J.; Li, J.; Zheng, X.; Fu, M.; Kendrick, K. M.; Becker, B.; Uddin, L. Q.

10.1101/841197 — neuroscience — Posted on 2019-11-13

2067 Structural basis for COMPASS recognition of an H2B-ubiquitinated nucleosome

Worden, E. J.; Zhang, X.; Wolberger, C.

10.1101/841262 — molecular biology — Posted on 2019-11-13

2068 Targeting Cellular DNA Damage Responses: Predicting in vivo treatment responses using an in vitro-calibrated agent-based mathematical model.

Hamis, S. J.; Yates, J.; Chaplain, M. A.; Powathil, G. G.

10.1101/841270 — cancer biology — Posted on 2019-11-13

2069 Production of multiple bacteriocins, including the novel bacteriocin gassericin M, by Lactobacillus gasseri LM19, a strain isolated from human milk

Garcia-Gutierrez, E.; O'Connor, P. M.; Colquhoun, I. J.; Vior, N. M.; Rodriguez, J. M.; Mayer, M. J.; Cotter, P. D.; Narbad, A.

10.1101/841254 — microbiology — Posted on 2019-11-13

2070 A Novel Process Maintaining Glycerophospholipid Homeostasis in Mammalian Cells

Hermansson, M.; Hanninen, S. M.; Kjellberg, M.; Somerharju, P.

10.1101/841221 — biochemistry — Posted on 2019-11-13

2071 Chemical genetics strategy to profile kinase target engagement reveals role of FES in neutrophil phagocytosis via SYK activation

van der Wel, T.; Hilhorst, R.; den Dulk, H.; van den Hooven, T.; Prins, N. M.; Wijnakker, J. A. P. M.; Florea, B. I.; Lenselink, E. B.; van Westen, G. J. P.; Ruijtenbeek, R.; Overkleeft, H. S.; Kaptein, A.; Barf, T.; van der Stelt, M.

10.1101/841189 — physiology — Posted on 2019-11-13

2072 SOLQC : Synthetic Oligo Library Quality Control Tool.

Sabary, O.; Orlev, Y.; Shafir, R.; Anavy, L.; Yaakobi, E.; Yakhini, Z.

10.1101/840231 — bioinformatics — Posted on 2019-11-13

2073 EXoO-Tn: Tag-n-Map the Tn Antigen in the Human Proteome

Yang, W.; Ao, M.; Song, A.; Xu, Y.; Zhang, H.

10.1101/840298 — systems biology — Posted on 2019-11-13

2074 Specific gyrA gene mutations correlate with high prevalence of discordant levofloxacin resistance in Mycobacterium tuberculosis isolates from Beijing, China

Huo, F.; Ma, Y.; Li, S.; Xue, Y.; Shang, Y.; Dong, L.; Li, Y.; Pang, Y.

10.1101/841031 — microbiology — Posted on 2019-11-13

2075 Production of Insoluble Starch-Like Granules in Escherichia coli by Modification of the Glycogen Synthesis Pathway

White, J. J.; Cain, N.; French, C.

10.1101/841023 — microbiology — Posted on 2019-11-13

2076 Optimal reproductive phenology under size-dependent cannibalism

Takashina, N.; Fiksen, O.

10.1101/840264 — ecology — Posted on 2019-11-13

2077 Uncovering patterns of atomic interactions in static and dynamic structures of proteins

Venkatakrishnan, A. J.; Fonseca, R.; Ma, A. K.; Hollingsworth, S. A.; Chemparathy, A.; Hilger, D.; Kooistra, A. J.; Ahmari, R.; Babu, M. M.; Kobilka, B. K.; Dror, R.

10.1101/840694 — biophysics — Posted on 2019-11-13

2078 Quantitative analysis of the physiological contributions of glucose to the TCA cycle

Liu, S.; Dai, Z.; Cooper, D.; Kirsch, D. G.; Locasale, J.

10.1101/840538 — systems biology — Posted on 2019-11-13

2079 Antithetic integral feedback for the robust control of monostable and oscillatory biomolecular circuits

Olsman, N.; Forni, F.

10.1101/838748 — synthetic biology — Posted on 2019-11-13

2080 Classification of down-core foraminifera image sets using convolutional neural networks.

Marchant, R.; Tetard, M.; Pratiwi, A.; de Garidel-Thoron, T.

10.1101/840926 — paleontology — Posted on 2019-11-13

2081 Mapping the evolutionary landscape of Zika virus infection in immunocompromised mice.

Noval, M. G.; Rangel, M. V.; Johnson, K. E.; De Jesus, E.; Gerber, A.; Schuster, S.; Cadwell, K.; Ghedin, E.; Stapleford, K. A.

10.1101/839803 — microbiology — Posted on 2019-11-13

2082 Whole Genome Sequencing and Assembly of the Asian Honey Bee Apis dorsata

Oppenheim, S.; Cao, X.; Rueppel, O.; Chantawannakul, P.; Krongdang, S.; Phokasem, P.; DeSalle, R.; Goodwin, S.; Xing, J.; Rosenfeld, J. A.

10.1101/840207 — genomics — Posted on 2019-11-13

2083 Novel transformer networks for improved sequence labeling in genomics

Clauwaert, J.; Waegeman, W.

10.1101/836163 — genetics — Posted on 2019-11-13

2084 Integrating genome-wide association mapping of additive and dominance genetic effects to improve genomic prediction accuracy in Eucalyptus

Tan, B.; Ingvarsson, P. K.

10.1101/841049 — genetics — Posted on 2019-11-13

2085 Recurrent Neoantigens in Colorectal Cancer as Potential Immunotherapy Targets

Chen, C.; Liu, S.; Li, B.

10.1101/840918 — cancer biology — Posted on 2019-11-13

2086 GPCRmd uncovers the dynamics of the 3D-GPCRome

Rodriguez-Espigares, I.; Torrens-Fontanals, M.; Tiemann, J. K. S.; Aranda-Garcia, D.; Ramirez-Anguita, J. M.; Stepniewski, T. M.; Worp, N.; Varela-Rial, A.; Morales-Pastor, A.; Medel Lacruz, B.; Pandy-Szekeres, G.; Mayol, E.; Fonseca, R.; Giorgino, T.; Carlsson, J.; Deupi, X.; Filipek, S.; Gomez-Tamayo, J. C.; Gonzalez, A.; Gutierrez-de-Teran, H.; Jimenez, M.; Jespers, W.; Kapla, J.; Kolb, P.; Latek, D.; Marti-Solano, M.; Matricon, P.; Matsoukas, M.-T.; Miszta, P.; Olivella, M.; Perez-Benito, L.; Rios, S.; Rodriguez-Torrecillas, I.; Sallander, J.; Sztyler, A.; Vasile, S.; Hildebrand, P. W.; De

10.1101/839597 — biophysics — Posted on 2019-11-13

2087 Evolutionary branching of function-valued traits under constraints

Ito, H. C.

10.1101/841064 — evolutionary biology — Posted on 2019-11-13

2088 When polymorphism and monomorphism meet: discordant genomic and phenotypic clines across a lizard contact zone

Dong, C. M.; McLean, C. A.; Elliott, A.; Moussalli, A.; Stuart-Fox, D.

10.1101/840678 — evolutionary biology — Posted on 2019-11-13

2089 Integrating Economic dynamics into Ecological Networks: The case of fishery sustainability

Glaum, P.; Cocco, V.; Valdovinos, F. S.

10.1101/840314 — ecology — Posted on 2019-11-13

2090 Spatiotemporal Control of CRISPR/Cas9 Function in Cells and Zebrafish using Light-Activated Guide RNA

Zhou, W.; Brown, W.; Bardhan, A.; Delaney, M.; Ilk, A. S.; Rauen, R. R.; Kahn, S. I.; Tsang, M.; Deiters, A.

10.1101/831974 — developmental biology — Posted on 2019-11-13

2091 Electrical propagation of vasodilatory signals in capillary networks

Lee, P.

10.1101/840280 — systems biology — Posted on 2019-11-13

2092 Presynaptic depression maintains stable synaptic strength in developmentally arrested Drosophila larvae

Dickman, D.; ganetzky, b.; Miller, D.; Perry, S.; Goel, P.

10.1101/840470 — neuroscience — Posted on 2019-11-13

2093 Rapid Ultrastructural Changes of PSD and Extrasynaptic Axon-spine Interface Membrane during LTP Induced in Single Dendritic Spine

Sun, Y.; Smirnov, M. S.; Kamasawa, N.; Yasuda, R.

10.1101/840629 — neuroscience — Posted on 2019-11-13

2094 The Time Varying Networks of the Interoceptive Attention and Rest

Martinez, A. Y.; Demertzi, A.; Bauer, C. C. C.; Gracia-Tabuenca, Z.; Alcauter, S.; Barrios, F. A.

10.1101/840645 — neuroscience — Posted on 2019-11-13

2095 α-synuclein aggregates induce c-Abl activation and neurodegeneration by a redox stress mechanism

Ghosh, S.; Won, S. J.; Fong, R.; Butler, N. J. M.; Moss, A.; Wong, C.; Pan, J.; Sanchez, J.; Wu, L.; Wang, J.; Manfredsson, F. P.; Swanson, R. A.

10.1101/840306 — neuroscience — Posted on 2019-11-13

2096 Mediator subunit Med15 dictates the conserved 'fuzzy' binding mechanism of yeast transcription activators Gal4 and Gcn4

Tuttle, L. M.; Pacheco, D.; Warfield, L.; Hahn, S.; Klevit, R. E.

10.1101/840348 — molecular biology — Posted on 2019-11-13

2097 CRISPR screening of porcine sgRNA library identified host factors essential for Japanese encephalitis virus replication

Zhao, C.; Liu, H.; Xiao, T.; Wang, Z.; Nie, X.; Li, X.; Qian, P.; Qin, L.; Han, X.; Zhang, J.; Ruan, J.; Zhu, M.; Miao, Y.; Zuo, B.; Yang, K.; Xie, S.; Zhao, S.

10.1101/840835 — genetics — Posted on 2019-11-13

2098 Chimpanzee fibroblasts exhibit greater adherence and migratory phenotypes than human fibroblasts

Zintel, T. M.; Ducey, D.; Babbitt, C. C.

10.1101/838755 — evolutionary biology — Posted on 2019-11-13

2099 Deep Discriminative Fine-Tuning for Cancer TypeClassification

Harley, A.

10.1101/841056 — cancer biology — Posted on 2019-11-13

2100 Federated queries of clinical data repositories: balancing accuracy and privacy

Yu, Y. W.; Weber, G. M.

10.1101/841072 — bioinformatics — Posted on 2019-11-13

2101 BDKANN - Biological Domain Knowledge-based Artificial Neural Network for drug response prediction

Snow, O.; Sharifi, H.; Lu, J.; Zolotareva, O.; Lee, M.; Ester, M.

10.1101/840553 — bioinformatics — Posted on 2019-11-13

2102 Anthropomorphic left ventricular mesh phantom: a framework to investigate the accuracy of SQUEEZ using Coherent Point Drift for the detection of regional wall motion abnormalities

Manohar, A.; Colvert, G. M.; Schluchter, A.; Contijoch, F. J.; McVeigh, E. R.

10.1101/840595 — bioengineering — Posted on 2019-11-13

2103 Revealing acquired resistance mechanisms of kinase-targeted drugs using an on-the-fly, function-site interaction fingerprint approach

Zhao, Z.; Bourne, P. E.

10.1101/831800 — biochemistry — Posted on 2019-11-13

2104 Learning cis-regulatory principles of ADAR-based RNA editing from CRISPR-mediated mutagenesis

Liu, X.; Sun, T.; Shcherbina, A.; Li, Q.; Kappel, K.; Jarmoskaite, I.; Ramaswami, G.; Das, R.; Kundaje, A.; Li, J. B.

10.1101/840884 — molecular biology — Posted on 2019-11-13

2105 Detection of pre-microRNA with Convolutional Neural Networks

Cordero Cruz, J. A.; Menkovski, V.; Allmer, J.

10.1101/840579 — bioinformatics — Posted on 2019-11-13

2106 Pre-Innervated Tissue Engineered Muscle Promotes a Pro-Regenerative Microenvironment Following Volumetric Muscle Loss

DAS, S.; BROWNE, K. D.; LAIMO, F. A.; MAGGIORE, J. C.; Kaisaier, H.; Aguilar, C. A.; ALI, Z. S.; MOURKIOTI, F.; CULLEN, D. K.

10.1101/840124 — bioengineering — Posted on 2019-11-13

2107 Hippocampal ensembles represent sequential relationships among discrete nonspatial events

Shahbaba, B.; LI, L.; Agostinelli, F.; Saraf, M.; Elias, G. A.; Baldi, P. F.; Fortin, N. J.

10.1101/840199 — neuroscience — Posted on 2019-11-13

2108 JunB controls intestinal effector programs in regulatory T cells

Wheaton, J. D.; Ciofani, M.

10.1101/772194 — immunology — Posted on 2019-11-13

2109 Stereomotion processing in the non-human primate brain

Hejja-Brichard, Y.; Rima, S.; Rapha, E.; Durand, J.-B.; Cottereau, B. R.

10.1101/638155 — neuroscience — Posted on 2019-11-13

2110 NORTH: a highly accurate and scalable Naive Bayes based ORTHologous gene cluster prediction algorithm

Ibtehaz, N.; Ahmed, S.; Saha, B.; Rahman, M. S.; Bayzid, M. S.

10.1101/528323 — bioinformatics — Posted on 2019-11-13

2111 Somalier: rapid relatedness estimation for cancer and germline studies using efficient genome sketches

Pedersen, B. S.; Bhetariya, P. J.; Brown, J.; Marth, G.; Jensen, R.; Bronner, M. P.; Underhill, H. R.; Quinlan, A. R.

10.1101/839944 — bioinformatics — Posted on 2019-11-13

2112 SuperFreq: Integrated mutation detection and clonal tracking in cancer

Flensburg, C.; Sargeant, T.; Oshlack, A.; Majewski, I.

10.1101/380097 — bioinformatics — Posted on 2019-11-13

2113 Saccade vigor partly reflects the subjective economic value of the visual stimulus

Yoon, T.; Jaleel, A.; Ahmed, A. A.; Shadmehr, R.

10.1101/770560 — neuroscience — Posted on 2019-11-13

2114 Whole-chromosome hitchhiking driven by a male-killing endosymbiont

Martin, S. H.; Singh, K. S.; Gordon, I. J.; Omufwoko, K. S.; Collins, S.; Warren, I. A.; Munby, H.; Brattström, O.; Traut, W.; Martins, D. J.; Smith, D. A. S.; Jiggins, C. D.; Bass, C.; ffrench-Constant, R. H.

10.1101/703421 — evolutionary biology — Posted on 2019-11-13

2115 High-throughput transposon sequencing highlights the cell wall as an important barrier for salt stress in methicillin resistant Staphylococcus aureus

Schuster, C. F.; Wiedemann, D. M.; Kirsebom, F. C. M.; Santiago, M.; Walker, S.; Grundling, A.

10.1101/690511 — microbiology — Posted on 2019-11-13

2116 Synthetic hybrids of six yeast species

Peris, D.; Alexander, W. G.; Fisher, K. J.; Moriarty, R. V.; Basuino, M. G.; Ubbelohde, E. J.; Wrobel, R. L.; Hittinger, C. T.

10.1101/597633 — genetics — Posted on 2019-11-13

2117 Understanding the Drivers of Submicroscopic Malaria Infection: Updated Insights from A Systematic Review of Population Surveys

Whittaker, C.; Slater, H. C.; Bousema, T.; Drakeley, C.; Ghani, A.; Okell, L. C.

10.1101/554311 — epidemiology — Posted on 2019-11-13

2118 Reanalysis of Alzheimer's Brain Sequencing Data Reveals Absence of Purported HHV6A and HHV7

Chorlton, S. D.

10.1101/830695 — bioinformatics — Posted on 2019-11-13

2119 An integrative approach to investigate natural variation in the accumulation of aliphatic glucosinolates in Arabidopsis thaliana

Sharma, S.; Popa, O.; Ebenhoeh, O.; Kopriva, S.

10.1101/838227 — plant biology — Posted on 2019-11-13

2120 The Degree Distribution of Human Brain Functional Connectivity is Generalized Pareto: A Multi-Scale Analysis

Zucca, R.; Arsiwalla, X. D.; Le, H.; Rubinov, M.; Gurgui, A.; Verschure, P.

10.1101/840066 — neuroscience — Posted on 2019-11-13

2121 Synaptogenic activity of the axon guidance molecule Robo2 is critical for hippocampal circuit function

Blockus, H.; Rolotti, S.; Szoboszlay, M.; Ming, T.; Schroeder, A.; Vennekens, K. M.; Katsamba, P.; Bahna, F.; Mannepalli, S.; Ahlsen, G.; Honig, B.; Shapiro, L.; de Wit, J.; Losonczy, A.; Polleux, F.

10.1101/840710 — neuroscience — Posted on 2019-11-13

2122 Cervicovaginal microbiome composition drives metabolic profiles in healthy pregnancy

Oliver, A.; LaMere, B.; Weihe, C.; Wandro, S.; Lindsay, K.; Wadhwa, P.; Mills, D.; Pride, D. T.; Fiehn, O.; Northen, T.; de Raad, M.; Li, H.; Martiny, J. B. H.; Lynch, S.; Whiteson, K.

10.1101/840520 — microbiology — Posted on 2019-11-13

2123 DeepPheno: Predicting single gene knockout phenotypes

Kulmanov, M.; Hoehndorf, R.

10.1101/839332 — bioinformatics — Posted on 2019-11-13

2124 Graph Convolutional Networks for Epigenetic State Prediction Using Both Sequence and 3D Genome Data

Lanchantin, J.; Qi, Y.

10.1101/840173 — bioinformatics — Posted on 2019-11-13

2125 Deep functional synthesis: a machine learning approach to gene functional enrichment

Wang, S.; Ma, J.; Fong, S.; Rensi, S.; Han, J.; Peng, J.; Pratt, D.; Altman, R.; Ideker, T.

10.1101/824086 — systems biology — Posted on 2019-11-13

2126 Olfactory Response as a Marker for Alzheimer's Disease: Evidence from Perception and Frontal Oscillation Coherence Deficit

Sedghizadeh, M. J.; Hojjati, H.; Ezzatdoost, K.; Aghajan, H.; Vahabi, Z.; Tarighatnia, H.

10.1101/840934 — neuroscience — Posted on 2019-11-13

2127 FIMBRIAE AND FLAGELLA MEDIATED SURFACE MOTILITY AND THE EFFECT OF GLUCOSE ON NONPATHOGENIC AND UROPATHOGENIC ESCHERICHIA COLI

Ambagaspitiye, S.; Sudarshan, S.; Hogins, J.; McDill, P.; De Nisco, N. J.; Zimmern, P. E.; Reitzer, L.

10.1101/840991 — microbiology — Posted on 2019-11-13

2128 In-silico immune cell deconvolution of the airway proteomes of infants with pneumonia reveals a link between reduced airway eosinophils and an increased risk of mortality

Sande, C. J.; Waeni, J. M.; Njunge, J. M.; Mutunga, M. M.; Gicheru, E. T.; Kibinge, N. K.; Gwela, A.

10.1101/840090 — immunology — Posted on 2019-11-13

2129 Type-2 diabetes with low LDL-C: genetic insights into a unique phenotype

Klimentidis, Y. C.; Arora, A.; Newell, M.; Zhou, J.; Ordovas, J. M.; Renquist, B. J.; Wood, A. C.

10.1101/837013 — genetics — Posted on 2019-11-13

2130 A mitochondria-targeted antioxidant affects the carotenoid-based plumage of red crossbills

Cantarero, A.; Mateo, R.; Camarero Abella, P. R.; Alonso, D.; Fernandez-Eslava, B.; ALONSO-ALVAREZ, C.

10.1101/839670 — evolutionary biology — Posted on 2019-11-13

2131 Spatiotemporal dynamics and modelling support the case for area-wide management of citrus greasy spot in a Brazilian smallholder farming region

Laranjeira, F. F.; Silva, S. X.; Murray-Watson, R. E.; Soares, A. C. F.; Santos-Filho, H. P.; Cunniffe, N. J.

10.1101/839431 — ecology — Posted on 2019-11-13

2132 A demographic approach to understanding the effects of climate on population growth

Caruso, N. M.; Staudhammer, C. L.; Rissler, L. J.

10.1101/840512 — ecology — Posted on 2019-11-13

2133 Non-stem progenitors enable coordinated changes in gut epithelial cell-type composition

Sanman, L. E.; Chen, I. W.; Bieber, J. M.; Steri, V.; Hann, B.; Wu, L. F.; Altschuler, S. J.

10.1101/840371 — cell biology — Posted on 2019-11-13

2134 Detection of somatic structural variants from short-read next-generation sequencing data

Gong, T.; Hayes, V. M.; Chan, E. K.

10.1101/840751 — bioinformatics — Posted on 2019-11-13

2135 Prediction of breast cancer proteins using molecular descriptors and artificial neural networks: a focus on cancer immunotherapy proteins, metastasis driver proteins, and RNA-binding proteins

Lopez-Cortes, A.; Cabrera-Andrade, A.; Vazquez-Naya, J. M.; Pazos, A.; Gonzales-Diaz, H.; Paz-y-Mino, C.; Guerrero, S.; Perez-Castillo, Y.; Tejera, E.; Munteanu, C. R.

10.1101/840108 — bioinformatics — Posted on 2019-11-13

2136 ComHub: Community predictions of hubs in gene regulatory networks

Akesson, J.; Lubovac-Pilav, Z.; Magnusson, R.; Gustafsson, M.

10.1101/840959 — bioinformatics — Posted on 2019-11-13

2137 Patterns of socio-cognitive stratification and perinatal risk in the child brain

Alnaes, D.; Kaufmann, T.; Marquand, A. F.; Smith, S. M.; Westlye, L. T.

10.1101/839969 — neuroscience — Posted on 2019-11-13

2138 Mesmerize: A highly versatile platform for calcium imaging analysis and creation of self-contained FAIR datasets.

Kolar, K.; Dondorp, D.; Chatzigeorgiou, M.

10.1101/840488 — neuroscience — Posted on 2019-11-13

2139 Human papillomavirus 16 E6 and E7 synergistically repress innate immune gene transcription

James, C. D.; Fontan, C. T.; Otoa, R.; Das, D.; Prabhakar, A. T.; Wang, X.; Bristol, M. L.; Morgan, I. M.

10.1101/841007 — molecular biology — Posted on 2019-11-13

2140 Comparative transcriptomics reveal distinct patterns of gene expression conservation through vertebrate embryogenesis

Chan, M. E.; Bhamidipati, P. S.; Goldsby, H. J.; Hintze, A.; Hofmann, H. A.; Young, R. L.

10.1101/840801 — evolutionary biology — Posted on 2019-11-13

2141 Loss of macp{Psi} ribosomal RNA modification is a major feature of cancer

Babaian, A.; Rothe, K.; Girodat, D.; Minia, I.; Djondovic, S.; Milek, M.; Wieden, H.-J.; Landthaler, M.; Morin, G. B.; Mager, D. L.

10.1101/840132 — cancer biology — Posted on 2019-11-13

2142 Phylogenetic reconstruction based on synteny block and gene adjacencies

Drillon, G.; Champeimont, R.; Oteri, F.; Fischer, G.; Carbone, A.

10.1101/840942 — bioinformatics — Posted on 2019-11-13

2143 Computational Model Predicts Paracrine and Intracellular Drivers of Fibroblast Phenotype After Myocardial Infarction

Zeigler, A. C.; Nelson, A. R.; Chandrabhatla, A. S.; Brazhkina, O.; Holmes, J. W.; Saucerman, J. J.

10.1101/840017 — systems biology — Posted on 2019-11-13

2144 Divergent Energy Expenditure Impacts Mouse Metabolic Adaptation to Acute High-Fat/High-Sucrose Diet Producing Sexually Dimorphic Weight Gain Patterns

Morris, E. M. M.; Noland, R. D.; Allen, J. A.; McCoin, C. S.; Xia, Q.; Koestler, D. C.; Shook, R. P.; Lighton, J. R. B.; Christianson, J. A.; Thyfault, J. P.

10.1101/840702 — physiology — Posted on 2019-11-13

2145 Reversed paired-gRNA plasmid cloning strategy for efficient genome editing in Escherichia coli

DING, T.; Huang, C.; Liang, Z.; Ma, X.; Wang, N.; huo, y.

10.1101/839555 — microbiology — Posted on 2019-11-13

2146 Environmental variables determining the presence of an avian parasite: the case of the Philornis torquans complex (Diptera: Muscidae) in South America

Cuervo, P. F.; Percara, A.; Monje, L.; Beldomenico, P. M.; Quiroga, M. A.

10.1101/839589 — ecology — Posted on 2019-11-13

2147 Sarcomeres regulate cardiomyocyte maturation through MRTF-SRF signaling

guo, Y.; Jardin, B.; Sethi, I.; Ma, Q.; Moghadaszadeh, B.; Troiano, E.; Trembley, M.; Small, E.; Yuan, G.-C.; Beggs, A.; Pu, W.

10.1101/824185 — developmental biology — Posted on 2019-11-13

2148 SUMOylation targets shugoshin to stabilize sister kinetochore biorientation

Su, X. B.; Wang, M.; Schaffner, C.; Clift, D.; Nerusheva, O. O.; Tammsalu, T.; Wallek, A.; Wu, Y.; Kelly, D. A.; Jeyaprakash, A. A.; Storchova, Z.; Hay, R. T.; Marston, A. L.

10.1101/840157 — cell biology — Posted on 2019-11-13

2149 Cross-modal temporal biases emerge during early sensitive periods

Badde, S.; Ley, P.; Rajendran, S. S.; Shareef, I.; Kekunnaya, R.; Röder, B.

10.1101/839514 — neuroscience — Posted on 2019-11-13

2150 Identification of conserved gene regulatory networks that integrate environmental sensing and growth in the root cambium

Choe, G.; Hoang, N. V.; Zheng, Y.; Aliaga Fandino, A. C.; Hur, J.; Sung, I.; Ahn, H.; Kim, S.; Fei, Z.; Lee, J.-Y.

10.1101/839464 — developmental biology — Posted on 2019-11-13

2151 Cell cycle S-phase arrest drives cell extrusion

Dwivedi, V. K.; Pardo-Pastor, C.; Droste, R.; Denning, D. P.; Rosenblatt, J.; Horvitz, H. R.

10.1101/839845 — cell biology — Posted on 2019-11-13

2152 Serial protein crystallography in an electron microscope

Bücker, R.; Hogan-Lamarre, P.; Mehrabi, P.; Schulz, E. C.; Bultema, L. A.; Gevorkov, Y.; Brehm, W.; Yefanov, O.; Oberthür, D.; Kassier, G. H.; Miller, R. J. D.

10.1101/682575 — molecular biology — Posted on 2019-11-13

2153 Computational analysis of filament polymerization dynamics in cytoskeletal networks

Caldas, P.; Radler, P.; Sommer, C.; Loose, M.

10.1101/839571 — biophysics — Posted on 2019-11-13

2154 A Graph Auto-Encoder for Haplotype Assembly and Viral Quasispecies Reconstruction

Ke, Z.; Vikalo, H.

10.1101/837674 — bioinformatics — Posted on 2019-11-13

2155 Obesity and brain topological organization differences throughout the lifespan

Ottino-Gonzalez, J.; Baggio, H. C.; Jurado, M. A.; Segura, B.; Caldu, X.; Prats-Soteras, X.; Tor, E.; Sender-Palacios, M. J.; Miro, N.; Sanchez-Garre, C.; Dadar, M.; Dagher, A.; Garcia Garcia, I.; Garolera, M.

10.1101/685081 — neuroscience — Posted on 2019-11-13

2156 Conjunctive Representations that Integrate Stimuli, Responses, and Rules are Critical for Action Selection

Kikumoto, A.; Mayr, U.

10.1101/835652 — neuroscience — Posted on 2019-11-13

2157 Stimjim: open source hardware for precise electrical stimulation

Cermak, N.; Wilson, M. A.; Schiller, J.; Newman, J. P.

10.1101/757716 — neuroscience — Posted on 2019-11-13

2158 Detecting and quantifying natural selection at two linked loci from time series data of allele frequencies

He, Z.; Dai, X.; Beaumont, M. A.; Yu, F.

10.1101/562967 — genetics — Posted on 2019-11-13

2159 An epigenetic clock for human skeletal muscle

Voisin, S.; Harvey, N. R.; Haupt, L. M.; Griffiths, L. R.; Ashton, K. J.; Coffey, V. G.; Doering, T. M.; Thompson, J.-L.; Benedict, C.; Cedernaes, J.; Lindholm, M. E.; Craig, J. M.; Rowlands, D. S.; Sharples, A. P.; Horvath, S.; Eynon, N.

10.1101/821009 — bioinformatics — Posted on 2019-11-13

2160 Staphylococcus aureus PSMα3 Cross-α Fibril Polymorphism and Determinants of Cytotoxicity

Tayeb-Fligelman, E.; Salinas, N.; Tabachnikov, O.; Landau, M.

10.1101/452011 — biochemistry — Posted on 2019-11-13

2161 Riboflavin Directly Mediates the Dealkylation by Microbial Cytochrome P450 Monooxygeneses

Zhang, C.; Lu, M.; Lin, L.; Huang, Z.; Zhang, R.; Wu, X.; Chen, Y.

10.1101/801928 — biochemistry — Posted on 2019-11-13

2162 Probing the unfolded protein response to mouse hepatitis virus coronavirus infection through RNA sequencing and ribosome profiling

Cook, G. M.; Brown, K.; Franaszek, K.; Moore, N. A.; Siddell, S. G.; Brierley, I.; Firth, A. E.; Irigoyen, N.

10.1101/292979 — microbiology — Posted on 2019-11-13

2163 Air mass source determines airborne microbial diversity at the ocean-atmosphere interface of the Great Barrier Reef marine ecosystem

Archer, S.; Lee, K.; King-Miaow, K.; Caruso, T.; Harvey, M.; Huang, D.; Wainwright, B.; Pointing, S.

10.1101/583427 — microbiology — Posted on 2019-11-13

2164 Hybridization promotes asexual reproduction in Caenorhabditis nematodes

Lamelza, P.; Young, J. M.; Noble, L. M.; Caro, L.; Isakharov, A.; Palanisamy, M.; Rockman, M. V.; Malik, H. S.; Ailion, M.

10.1101/588152 — evolutionary biology — Posted on 2019-11-13

2165 Enhanced translation expands the endo-lysosome size and promotes antigen presentation during phagocyte activation

Hipolito, V. E. B.; Diaz, J.; Tandoc, K.; Oertlin, C.; Ristau, J.; Chauhan, N.; Saric, A.; McLaughlan, S.; Larsson, O.; Topisirovic, I.; Botelho, R.

10.1101/260257 — cell biology — Posted on 2019-11-13

2166 Effects of coral colony morphology on turbulent flow dynamics

HOSSAIN, M. M.; STAPLES, A. E.

10.1101/839902 — biophysics — Posted on 2019-11-12

2167 Effect of arbuscular mycorrhizal fungi (AMF) and plant growth promoting rhizobacteria (PGPR) on microbial community structure of phenanthrene and pyrene contaminated soils using Illumina HiSeq sequencing.

Li, W.-b.; Li, W.; Xing, L.-j.; Guo, S.-x.

10.1101/839910 — ecology — Posted on 2019-11-12

2168 Higher anhedonia during withdrawal from initial opioid exposure is protective against subsequent opioid self-administration in rats.

Swain, Y.; Muelken, P.; Skansberg, A.; Lanzdorf, D.; Haave, Z.; LeSage, M. G.; Gewirtz, J. C.; Harris, A. C.

10.1101/839993 — animal behavior and cognition — Posted on 2019-11-12

2169 Prioritization of abiotic and biotic stress responses by direct linkage of ABI1 phosphatase and CPK5 calcium-dependent protein kinase

Seybold, H.; Bortlik, J.; Conrads, B.; Hoehenwarter, W.; Romeis, T.

10.1101/839662 — plant biology — Posted on 2019-11-12

2170 Size, not temperature, drives cyclopoid copepod predation of invasive mosquito larvae

Russell, M. C.; Qureshi, A.; Wilson, C. G.; Cator, L. J.

10.1101/839480 — ecology — Posted on 2019-11-12

2171 Emergence of neuronal diversity during vertebrate brain development

Raj, B.; Farrell, J. A.; McKenna, A.; Leslie, J. L.; Schier, A. F.

10.1101/839860 — developmental biology — Posted on 2019-11-12

2172 Live Cell Imaging of Single RNA Molecules with Fluorogenic Mango II Arrays

Cawte, A. D.; Unrau, P. J.; Rueda, D. S.

10.1101/840082 — cell biology — Posted on 2019-11-12

2173 The flexible N-terminus of BchL protects its cluster in oxygenic environments and autoinhibits activity

Corless, E. I.; Imran, S. M. S.; Watkins, M. B.; Origanti, S.; Bacik, J. P.; Kitelinger, R.; Soffe, M. S.; Danyal, K.; Seefeldt, L. C.; Bennett, B.; Ando, N.; Antony, E.

10.1101/840439 — biochemistry — Posted on 2019-11-12

2174 Astrocyte-like glia-specific gene deathstar is crucial for normal development, adult locomotion and lifespan of male Drosophila

Najafi, H.; Wong, K.; Kim, W. J.

10.1101/839811 — genetics — Posted on 2019-11-12

2175 Somalier: rapid relatedness estimation for cancer and germline studies using efficient genome sketches

Pedersen, B. S.; Bhetariya, P. J.; Marth, G.; Jensen, R.; Bronner, M. P.; Underhill, H. R.; Quinlan, A. R.

10.1101/839944 — bioinformatics — Posted on 2019-11-12

2176 Secondary motifs enable concentration-dependent regulation by Rbfox family proteins

Begg, B. E.; Jens, M.; Wang, P. Y.; Burge, C. B.

10.1101/840272 — biochemistry — Posted on 2019-11-12

2177 Recurrent Processes Emulate a Cascade of Hierarchical Decisions: Evidence from Spatio-Temporal Decoding of Human Brain Activity

Gwilliams, L.; King, J.-R.

10.1101/840074 — neuroscience — Posted on 2019-11-12

2178 Myeloarchitecture gradients in the human insula serve as blueprints for its diverse connectivity and function

Royer, J.; Paquola, C.; Lariviere, S.; Vos de Wael, R.; Tavakol, S.; Lowe, A.; Benkarim, O.; Evans, A.; Bzdok, D.; Smallwood, J.; Frauscher, B.; Bernhardt, B.

10.1101/839837 — neuroscience — Posted on 2019-11-12

2179 Conservation attention necessary across at least 44% of Earth’s terrestrial area to safeguard biodiversity

Allan, J. R.; Possingham, H. P.; Atkinson, S. C.; Waldron, A.; Di Marco, M.; Adams, V. M.; Butchart, S. H. M.; Venter, O.; Maron, M.; Williams, B. A.; Jones, K. R.; Visconti, P.; Wintle, B. A.; Reside, A. E.; Watson, J. E. M.

10.1101/839977 — ecology — Posted on 2019-11-12

2180 An information-theory approach to geometry for animal groups

Dahl, C. D.; Ferrando, E.; Zuberbuehler, K.

10.1101/839548 — animal behavior and cognition — Posted on 2019-11-12

2181 A Bayesian predictive approach for dealing with pseudoreplication

Lazic, S. E.; MELLOR, J. R.; Ashby, M. C.; Munafo, M. R.

10.1101/839894 — neuroscience — Posted on 2019-11-12

2182 Blue/green light-responsive cyanobacteriochromes are cell shade sensors in red light-replete niches

Enomoto, G.; Ikeuchi, M.

10.1101/839886 — microbiology — Posted on 2019-11-12

2183 First record of ‘plasticrusts’ and ‘pyroplastic’ from the European Mediterranean Sea

Ehlers, S. M.; Ellrich, J. A.

10.1101/837484 — ecology — Posted on 2019-11-12

2184 How to characterise shared space use networks

Wanelik, K. M.; Farine, D. R.

10.1101/839530 — ecology — Posted on 2019-11-12

2185 annoFuse: an R Package to annotate and prioritize putative oncogenic RNA fusions

Gaonkar, K. S.; Rathi, K. S.; Jain, P.; Zhu, Y.; Brown, M. A.; Zhang, B.; Raman, P.; Storm, P. B.; Maris, J. M.; Resnick, A. C.; Taroni, J. N.; Rokita, J. L.

10.1101/839738 — bioinformatics — Posted on 2019-11-12

2186 GeDex: A consensus Gene-disease Event Extraction System based on frequency patterns and supervised learning

Olayo-Alarcon, R.; Morales-Soto, L.; Velazquez-Ramirez, D. A.; Munguia-Reyes, A.; Balderas-Martinez, Y. I.; Mendez-Cruz, C. F.; Collado-Vides, J.

10.1101/839704 — bioinformatics — Posted on 2019-11-12

2187 ULK complex organization in autophagy by a C-shaped FIP200 N-terminal domain dimer

Shi, X.; Yokom, A. L.; Wang, C.; Young, L. N.; Youle, R. J.; Hurley, J. H.

10.1101/840009 — biochemistry — Posted on 2019-11-12

2188 Actigraphy in brain-injured patients - A valid measurement for assessing circadian rhythms?

Angerer, M.; Blume, C.; Raml, M.; Pichler, G.; Kunz, A. B.; Scarpatetti, M.; Trinka, E.; Schabus, M.

10.1101/839472 — neuroscience — Posted on 2019-11-12

2189 Lysyl oxidase promotes neuronal ferroptosis exacerbating seizure-induced hippocampal damage

Mao, X.-Y.; Jin, M.-Z.; Li, Q.; Jia, J.-N.; Sun, Q.-Y.; Zhou, H.-H.; Liu, Z.-Q.; Jin, W.-L.

10.1101/839852 — neuroscience — Posted on 2019-11-12

2190 Phylogenetic and functional diversity have contrasting effects on the ecological functioning of bacterial communities

Xenophontos, C.; Taubert, M.; Harpole, W. S.; Küsel, K.

10.1101/839696 — ecology — Posted on 2019-11-12

2191 Different roles of eye absent in the basal ovarian follicle and germarium of developing cockroach ovaries

Ramos, S.; Chelemen, F.; Pagone, V.; Elsaher, N.; Irles, P.; Piulachs, M.-D.

10.1101/839639 — developmental biology — Posted on 2019-11-12

2192 Caramel Dye IV Induces Oxidative Stress Damage In Liver And Kidney From Mice

Marins, E.; Silva, J. S. d.; Rosa, P. C.; Oliveira, V. A. d.; Pasinato, A. Z.; Moretto, J. G.; Vargas, J. E.; Soares, F. A. A.; Barcelos, R. P.

10.1101/824276 — pharmacology and toxicology — Posted on 2019-11-12

2193 Subarachnoid hemorrhage leads to early and persistent functional connectivity and behavioral changes in mice

Chung, D. Y.; Oka, F.; Jin, G.; Harriott, A.; Kura, S.; Aykan, S.; Qin, T.; Edmiston, W. J.; Lee, H.; Yaseen, M. A.; Sakadzic, S.; Boas, D.; Whalen, M. J.; Ayata, C.

10.1101/826891 — neuroscience — Posted on 2019-11-12

2194 The Consequences of Egg Adaptation in the H3N2 Component to the Immunogenicity of Live Attenuated Influenza Vaccine

Goldhill, D. H.; Lindsey, B.; Kugathasan, R.; Garza, Z. F.; Jagne, Y. J.; Sallah, H. J.; Goderski, G.; van Tol, S.; Höschler, K.; Meijer, A.; Barclay, W. S.; de Silva, T.

10.1101/834887 — immunology — Posted on 2019-11-12

2195 Design to Data for mutants of β-glucosidase B from Paenibacillus polymyxa: M319C, T431I, and K337D

Huang, P.; Contreras, S. C.; Bloomfield, E.; Schmitz, K.; Arredondo, A.; Siegel, J. B.

10.1101/839027 — biochemistry — Posted on 2019-11-12

2196 Genome Repository of Oiled Systems (GROS): an interactive and searchable database that expands the catalogued diversity of crude oil-associated microbes

Karthikeyan, S.; Rodriguez-R, L. M.; Heritier-Robbins, P.; Hatt, J.; Huettel, M.; Kostka, J. E.; Konstantinidis, K. T.

10.1101/838573 — genomics — Posted on 2019-11-12

2197 Genome-wide changes in genetic diversity in a population of Myotis lucifugus affected by white-nose syndrome

Lilley, T.; Wilson, I.; Field, K. A.; Reeder, D. M.; Turner, G. G.; Kurta, A.; Blomberg, A. S.; Hoff, S.; Herzog, C.; Paterson, S.

10.1101/764647 — evolutionary biology — Posted on 2019-11-12

2198 Sounds are remapped across saccades

Szinte, M.; Aagten-Murphy, D.; Jonikaitis, D.; Wollenberg, L.; Deubel, H.

10.1101/839449 — neuroscience — Posted on 2019-11-12

2199 Antibiotic resistant and extended-spectrum β-lactamase producing faecal coliforms in wastewater treatment plant effluent

Smyth, C.; O'Flaherty, A.; Walsh, F.; Do, T. T.

10.1101/839399 — microbiology — Posted on 2019-11-12

2200 Transposon expression in the Drosophila brain is driven by neighbouring genes and diversifies the neural transcriptome

Treiber, C. D.; Waddell, S.

10.1101/838045 — genetics — Posted on 2019-11-12

2201 Neuronal identity is maintained in the adult brain through KAT3-dependent enhancer acetylation

Lipinski, M.; Munoz-Viana, R.; del Blanco, B.; Medrano-Relinque, J.; Marquez-Galera, A.; Carames, J. M.; Szczepankiewicz, A. A.; Fernandez-Albert, J.; Navarron, C. M.; Olivares, R.; Wilczynski, G. M.; Canals, S.; Lopez-Atalaya, J. P.; Barco, A.

10.1101/836981 — cell biology — Posted on 2019-11-12

2202 Defining Essential Enhancer for Pluripotent stem cells using Features Oriented CRISPR-Cas9 Screen

Wang, H. F.; Warrier, T.; Farran, C. E.; Zheng, Z.; Xing, Q.; Fullwood, M. J.; Zhang, L.-F.; Li, H.; Xu, J.; Lim, T.-M.; Loh, Y.-H.

10.1101/839316 — genomics — Posted on 2019-11-12

2203 Diverse Species-Specific Phenotypic Consequences of Loss of Function Sorting Nexin 14 Mutations

Bryant, D.; Seda, M.; Peskett, E.; Maurer, C.; Pomeranz, G.; Ghosh, M.; Hawkins, T. A.; Cleak, J.; Datta, S.; Hariri, H.; Eckert, K.; Jafree, D.; Walsh, C.; Demetriou, C.; Ishida, M.; Aleman-Charlet, C.; Vestito, L.; Seselgyte, R.; McDonald, J. G.; Bitner-Glindzicz, M.; Hemberger, M.; Rihel, J.; Teboul, L.; Henne, M. M.; Jenkins, D. M.; Moore, G.; Stanier, P.

10.1101/838052 — developmental biology — Posted on 2019-11-12

2204 OpenSim Moco: Musculoskeletal optimal control

Dembia, C. L.; Bianco, N. A.; Falisse, A.; Hicks, J. L.; Delp, S. L.

10.1101/839381 — bioengineering — Posted on 2019-11-12

2205 Long-term warming effects on the microbiome and nitrogen fixation associated with the moss Racomitrium lanuginosum in a subarctic alpine heathland

Klarenberg, I. J.; Keuschnig, C.; Russi Colmenares, A. J.; Jungblut, A. D.; Jonsdottir, I. S.; Vilhelmsson, O.

10.1101/838581 — microbiology — Posted on 2019-11-12

2206 Diversity in CRISPR-based immunity protects susceptible genotypes by restricting phage spread and evolution

Common, J.; Walker-Sünderhauf, D.; van Houte, S.; Westra, E. R.

10.1101/774349 — evolutionary biology — Posted on 2019-11-12

2207 After the Honeymoon, the Divorce: Unexpected Outcomes of Disease Control Measures Against Endemic Infections

Hollingsworth, B.; Okamoto, K.; Lloyd, A.

10.1101/608653 — epidemiology — Posted on 2019-11-12

2208 Self-assembly of multi-component mitochondrial nucleoids via phase separation

Feric, M.; Demarest, T. G.; Tian, J.; Croteau, D. L.; Bohr, V. A.; Misteli, T.

10.1101/822858 — cell biology — Posted on 2019-11-12

2209 An enzymatic assay to measure long-term adherence to pre-exposure prophylaxis and antiretroviral therapy

Olanrewaju, A. O.; Sullivan, B. P.; Zhang, J. Y.; Bender, A. T.; Sevenler, D.; Lo, T. J.; Fernandez-Suarez, M.; Drain, P. K.; Posner, J. D.

10.1101/832410 — bioengineering — Posted on 2019-11-12

2210 Feasibility analysis of semiconductor voltage nanosensors for neuronal membrane potential sensing

Ludwig, A.; Serna, P.; Morgenstein, L.; Yang, G.; Bar-Elli, O.; Ortiz, G.; Miller, E.; Oron, D.; Grupi, A.; Weiss, S.; Triller, A.

10.1101/838342 — bioengineering — Posted on 2019-11-12

2211 Co-Increasing Neuronal Noise and Beta Power in the Developing Brain

He, W.; Donoghue, T.; Sowman, P. F.; Seymour, R. A.; Brock, J.; Crain, S.; Voytek, B.; Hillebrand, A.

10.1101/839258 — neuroscience — Posted on 2019-11-12

2212 Neuroprogesterone signals through Src kinase within RP3V neurons to induce the luteinizing hormone surge in female rats

Chuon, T.; Feri, M.; Carlson, C.; Ondrejik, S.; Micevych, P.; Sinchak, K.

10.1101/835470 — neuroscience — Posted on 2019-11-12

2213 B Cell Receptor-Responsive miR-141 and viral miR-BART9 promote Epstein-Barr Virus Reactivation Through FOXO3 Inhibition

Chen, Y.; Fachko, D. L.; Ivanov, N. S.; Skalsky, R. L.

10.1101/837294 — molecular biology — Posted on 2019-11-12

2214 Cytokinesis and post-abscission midbody remnants are regulated during mammalian brain development

McNeely, K. C.; Dwyer, N. D.

10.1101/529164 — developmental biology — Posted on 2019-11-12

2215 Dynamic integration of forward planning and heuristic preferences during multiple goal pursuit

Ott, F.; Markovic, D.; Strobel, A.; Kiebel, S. J.

10.1101/838425 — animal behavior and cognition — Posted on 2019-11-12

2216 An rpw8 quadruple mutant of Arabidopsis Col-0 is partially compromised in bacterial and fungal resistance

Castel, B.; Wu, Y.; Xiao, S.; Jones, J. D.

10.1101/839308 — plant biology — Posted on 2019-11-12

2217 Towards a biotechnological platform for the production of human pro-angiogenic growth factors in the green alga Chlamydomonas reinhardtii

Jarquin Cordero, M.; Chavez, M. N.; Centeno Cerdas, C.; Bohne, A. V.; Hopfner, U.; Machens, H.-G.; Egana, J. T.; Nickelsen, J.

10.1101/831933 — plant biology — Posted on 2019-11-12

2218 A novel pathway linking plasma membrane and chloroplasts is co-opted by pathogens to suppress salicylic acid-dependent defences

Medina-Puche, L.; Tan, H.; Dogra, V.; Wu, M.; Rosas-Diaz, T.; Wang, L.; Ding, X.; Zhang, D.; Fu, X.; Kim, C.; Lozano-Duran, R.

10.1101/837955 — plant biology — Posted on 2019-11-12

2219 Decoding neural responses to motion-in-depth using EEG

Himmelberg, M. M.; Segala, F. G.; Maloney, R. T.; Wade, A. R.

10.1101/661991 — neuroscience — Posted on 2019-11-12

2220 Attenuation of epigenetic regulator SMARCA4 and ERK-ETS signaling suppresses aging-related dopaminergic degeneration

Sun, L.; Zhang, J.; Chen, W.; Chen, Y.; Zhang, X.; Yang, M.; Xiao, M.; Ma, F.; Yao, Y.; Ye, M.; Zhang, Z.; Chen, K.; Chen, F.; Ren, Y.; Ni, S.; Zhang, X.; Yan, Z.; Sun, Z.; Zhou, H.-M.; Yang, H.; Xie, S.; Haque, M. E.; Huang, K.; Yang, Y.

10.1101/835876 — neuroscience — Posted on 2019-11-12

2221 Maximum likelihood estimation of natural selection and allele age from time series data of allele frequencies

He, Z.; Dai, X.; Beaumont, M. A.; Yu, F.

10.1101/837310 — genetics — Posted on 2019-11-12

2222 Characterization of GRK5 as a novel regulator of rhabdomyosarcoma tumor cell growth and self-renewal

Pham, T.; Robinson, K.; Vleeshouwer-Neumann, T.; Annis, J.; Chen, E.

10.1101/839340 — cancer biology — Posted on 2019-11-12

2223 An R Package for Divergence Analysis of Omics Data

Dinalankara, W.; Ke, Q.; Geman, D.; Marchionni, L.

10.1101/720391 — bioinformatics — Posted on 2019-11-12

2224 DIMERBOW: exploring possible GPCR dimer interfaces

Garcia-Recio, A.; Navarro, G.; Franco, R.; Olivella, M.; Guixa-Gonzalez, R.; Cordomi, A.

10.1101/836213 — bioinformatics — Posted on 2019-11-12

2225 dSNE: a visualization approach for use with decentralized data

Saha, D. K.; Calhoun, V. D.; DU, Y.; FU, Z.; Panta, S. R.; Plis, S. M.

10.1101/826974 — neuroscience — Posted on 2019-11-12

2226 Decoding the genomic basis of osteoarthritis

Steinberg, J.; Southam, L.; Butterfield, N. C.; Roumeliotis, T. I.; Fontalis, A.; Clark, M. J.; Jayasuriya, R. L.; Swift, D.; Shah, K. M.; Curry, K. F.; Brooks, R. A.; McCaskie, A. W.; Lelliott, C. J.; Choudhary, J. S.; Bassett, J. D.; Williams, G. R.; Wilkinson, J. M.; Zeggini, E.

10.1101/835850 — genomics — Posted on 2019-11-12

2227 Transcriptional analysis of sodium valproate in a serotonergic cell line reveals gene regulation through both HDAC inhibition-dependent and independent mechanisms

Sinha, P.; Cree, S.; Miller, A. L.; Pearson, J. F.; Kennedy, M. A.

10.1101/837732 — genomics — Posted on 2019-11-12

2228 Genome-wide association study of suicide death and polygenic prediction of clinical antecedents

Docherty, A.; Shabalin, A. A.; DiBlasi, E.; Monsen, E.; Mullins, N.; Adkins, D. E.; Bacanu, S.; Bakian, A.; Crowell, S.; Darlington, T.; Gray, D.; Keeshin, B.; Anderson, J. S.; Hayward, C.; Porteous, D.; McIntosh, A.; Li, Q.; Coon, H.

10.1101/234674 — genetics — Posted on 2019-11-12

2229 Robust Moiety Model Selection Using Mass Spectrometry Measured Isotopologues

Jin, H.; Moseley, H. N. B.

10.1101/839241 — bioinformatics — Posted on 2019-11-12

2230 BowSaw: inferring higher-order trait interactions associated with complex biological phenotypes

Dimucci, D.; Kon, M.; Segre, D.

10.1101/839357 — systems biology — Posted on 2019-11-12

2231 Peripheral Serum Metabolomic Profiles InformAntecedent Central Cognitive Impairment in Older Adults

Wang, J.; Wei, R.; Xie, G.; Arnold, M.; Louie, G.; MahmoudianDehkordi, S.; Blach, C.; Baillie, R.; Han, X.; De Jager, P. L.; Bennett, D. A.; Kaddurah-Daouk, R.; Jia, W.

10.1101/837989 — neuroscience — Posted on 2019-11-12

2232 Modeling dynamic allocation of effort in a sequential task using discounting models

Cuevas Rivera, D.; Strobel, A.; Goschke, T.; Kiebel, S.

10.1101/839456 — neuroscience — Posted on 2019-11-12

2233 Real-time tracking reveals the catalytic process of Rad51-driven DNA strand exchange

Ito, K.; Murayama, Y.; Kurokawa, Y.; Kanamaru, S.; Kokabu, Y.; Maki, T.; Argunhan, B.; Tsubouchi, H.; Ikeguchi, M.; Takahashi, M.; Iwasaki, H.

10.1101/839324 — molecular biology — Posted on 2019-11-12

2234 A/T/N polygenic risk score for cognitive decline in old age

Moore, A. M.; Filshtein, T. J.; Dumitrescu, L.; Harrati, A.; Elahi, F.; Mormino, E. C.; Deming, Y.; Kunkle, B. W.; Mungas, D. M.; Hedden, T.; Apostolova, L. G.; Saykin, A. J.; Chasioti, D.; Lu, Q.; Dennis, J.; Sealock, J.; Davis, L. K.; Fardo, D. W.; Buckley, R.; Hohman, T. J.

10.1101/838847 — genomics — Posted on 2019-11-12

2235 Cytokinetic and post-abscission midbody remnants are regulated during mammalian brain development

McNeely, K. C.; Dwyer, N. D.

10.1101/529164 — developmental biology — Posted on 2019-11-12

2236 Challenges in Peptide-Spectrum Matching: a Robust and Reproducible Statistical Framework for Removing Low-Accuracy, High-Scoring Hits

Hubler, S. L.; Kumar, P.; Mehta, S.; Easterly, C.; Johnson, J.; Jagtap, P. D.; Griffin, T. J.

10.1101/839290 — bioinformatics — Posted on 2019-11-12

2237 Surface Modification Effects on Single-Walled Carbon Nanotubes for Multimodal Optical Applications

Chio, L.; Pinals, R. L.; Goh, N. S.; Murali, A.; Landry, M. P.

10.1101/837278 — bioengineering — Posted on 2019-11-12

2238 BK current contributions to action potentials across the first postnatal week reflect age dependent changes in BK current kinetics in rat hippocampal neurons

Hunsberger, M. S.; Mynlieff, M.

10.1101/839233 — neuroscience — Posted on 2019-11-12

2239 Temperature and nutrient gradients correspond with lineage-specific microdiversification in the ubiquitous and abundant Limnohabitans freshwater genus

Props, R.; Denef, V. J.

10.1101/839407 — microbiology — Posted on 2019-11-12

2240 Low additive genetic variation in a trait under selection in domesticated rice

Karavolias, N. G.; Greenberg, A. J.; Barrero, L. S.; Maron, L. G.; Shi, Y.; Monteverde, E.; Pineros, M. A.; McCouch, S. R.

10.1101/637330 — genetics — Posted on 2019-11-12

2241 Oligogenic rare variant contributions in schizophrenia and their convergence with genes harboring de novo mutations in schizophrenia, autism, and intellectual disability: Evidence from multiplex families

John, J.; Kukshal, P.; Bhatia, T.; Harripaul, R.; Nimgaonkar, V. L.; Deshpande, S. N.; Thelma, B.

10.1101/829101 — genetics — Posted on 2019-11-12

2242 Acute perturbation of retromer and ESCPE-1 leads to functionally distinct and temporally resolved defects in endosomal cargo sorting.

Evans, A. J.; Daly, J. L.; Anuar, A. N.; Simonetti, B.; Cullen, P. J.

10.1101/836460 — cell biology — Posted on 2019-11-12

2243 Gonad transcriptome of golden mussel Limnoperna fortunei reveals potential sex differentiation genes

Afonso, L. F.; Americo, J. A.; Soares-Souza, G. B.; Torres, A. L. Q.; Wajsenzon, I. J. R.; Rebelo, M. d. F.

10.1101/818757 — bioinformatics — Posted on 2019-11-12

2244 scGAIN: Single Cell RNA-seq Data Imputation using Generative Adversarial Networks

Gunady, M. K.; Kancherla, J.; Bravo, H. C.; Feizi, S.

10.1101/837302 — bioinformatics — Posted on 2019-11-12

2245 Partial Hearing Restoration after ERBB2 Induction in Deafened Adult Mice

Zhang, J.; Na, D.; Dilts, M.; Henry, K. S.; White, P. M.

10.1101/838649 — neuroscience — Posted on 2019-11-12

2246 Early childhood development of white matter fiber density and morphology

Dimond, D.; Rohr, C. S.; Smith, R. E.; Dhollander, T.; Cho, I.; Lebel, C.; Dewey, D.; Connelly, A.; Bray, S.

10.1101/624171 — neuroscience — Posted on 2019-11-12

2247 A lifespan program of mouse synaptome architecture

Cizeron, M.; Qiu, Z.; Fransen, E.; Koniaris, B.; Gokhale, R.; Komiyama, N.; Grant, S.

10.1101/838458 — neuroscience — Posted on 2019-11-12

2248 Development of microsatellite markers for the threatened species Coleocephalocereus purpureus (Cactaceae) using next-generation sequencing

Fraga, D. A.; Carvalho, A. F.; Santana, R. S.; Machado, M. C.; Lacorte, G. A.

10.1101/838870 — genetics — Posted on 2019-11-12

2249 Delineation of the SUMO-Modified Proteome Reveals Regulatory Functions Throughout Meiosis

Bhagwat, N. R.; Owens, S.; Ito, M.; Boinapalli, J.; Poa, P.; Ditzel, A.; Kopparapu, S.; Mahalawat, M.; Davies, O. R.; Collins, S. R.; Johnson, J.; Krogan, N. J.; Hunter, N.

10.1101/828442 — genetics — Posted on 2019-11-12

2250 Eliciting priors and relaxing the single causal variant assumption in colocalisationanalyses

Wallace, C.

10.1101/838946 — genetics — Posted on 2019-11-12

2251 Spectral memory: Illumination evoked plasticity

Adeyefa-Olasupo, I.-E.

10.1101/490888 — animal behavior and cognition — Posted on 2019-11-12

2252 Gradual replacement of wild bees by honeybees in flowers of the Mediterranean Basin over the last 50 years

Herrera, C. M.

10.1101/828160 — ecology — Posted on 2019-11-12

2253 Unpaired Data Empowers Association Tests

Gong, M.; Liu, P.; Sciurba, F. C.; Stojanov, P.; Tao, D.; Tseng, G.; Zhang, K.; Batmanghelich, K.

10.1101/839159 — bioinformatics — Posted on 2019-11-12

2254 Single-dimensional human revealed stochastic preferences for multi-dimensional economic choice options

Volkmann, K.; Pastor-Bernier, A.; Stasiak, A.; Grabenhorst, F.; Schultz, W.

10.1101/832881 — neuroscience — Posted on 2019-11-12

2255 Functional hyperemia drives fluid exchange in the paravascular space

Kedarasetti, R.; Turner, K. L.; Echagarruga, C.; Gluckman, B. J.; Drew, P. J.; Costanzo, F.

10.1101/838813 — neuroscience — Posted on 2019-11-12

2256 Interactions between calmodulin and neurogranin govern the dynamics of CaMKII as a leaky integrator

Ordyan, M.; Bartol, T. M.; Kennedy, M. B.; Rangamani, P.; Sejnowski, T. J.

10.1101/809905 — neuroscience — Posted on 2019-11-12

2257 Novel patterns of complex structural variation revealed across thousands of cancer genome graphs

Hadi, K.; Yao, X.; Behr, J. M.; Deshpande, A.; Xanthopoulakis, C.; Rosiene, J.; Darmofal, M.; Tian, H.; DeRose, J.; Mortensen, R.; Adney, E. M.; Gajic, Z.; Eng, K.; Wala, J. A.; Wrzeszczynski, K. O.; Arora, K.; Shah, M.; Emde, A.-K.; Felice, V.; Frank, M. O.; Darnell, R.; Ghandi, M.; Huang, F.; Maciejowski, J.; De Lange, T.; Setton, J.; Riaz, N.; Reis-Filho, J. S.; Powell, S.; Knowles, D.; Reznik, E.; Mishra, B.; Beroukhim, R.; Zody, M. C.; Robine, N.; Oman, K.; Sanchez, C. A.; Kuhner, M. K.; Smith, L. P.; Galipeau, P. C.; Paulson, T. G.; Reid, B. J.; Li, X.; Wilkes, D.; Sboner, A.; Mosquera,

10.1101/836296 — genomics — Posted on 2019-11-12

2258 Transposable elements in individual genotypes of Drosophila simulans

Signor, S. A.

10.1101/781419 — evolutionary biology — Posted on 2019-11-12

2259 Same Equilibrium. Different Kinetics. Protein Functional Consequences.

Schmid, S.; Hugel, T.

10.1101/838938 — biophysics — Posted on 2019-11-12

2260 Local drug delivery to the entire cochlea without breaching its boundaries

Lukashkin, A. N.; Sadreev, I. I.; Zakharova, N.; Russell, I. J.; Yarin, Y. M.

10.1101/838508 — neuroscience — Posted on 2019-11-12

2261 Primary cilium-dependent cAMP/PKA signaling at the centrosome regulates neuronal migration

Stoufflet, J.; Chaulet, M.; Doulazmi, M.; Fouquet, C.; Dubacq, C.; Metin, C.; Trembleau, A.; Vincent, P.; Caille, I.

10.1101/765925 — neuroscience — Posted on 2019-11-12

2262 Cross-Infectivity of Vorticella across Genera of Mosquitoes for Development of Biological Mosquito Control Strategies

Durden, S.; Cruz, A.; Hunter, W.; Debboun, M.; Duguma, D.

10.1101/822536 — ecology — Posted on 2019-11-12

2263 Classification of clear cell renal cell carcinoma based on PKM alternative splicing

Li, X.; Turanli, B.; Juszczak, K.; Kim, W.; Arif, M.; Sato, Y.; Ogawa, S.; Turkez, H.; Nielsen, J.; Boren, J.; Uhlen, M.; Zhang, C.; Mardinoglu, A.

10.1101/823336 — systems biology — Posted on 2019-11-12

2264 Cross-kingdom signalling regulates spore germination in the moss Physcomitrella patens

Vesty, E. F.; Whotbread, A. L.; Needs, S.; Tanko, W.; Jones, K. L.; Halliday, N.; Ghaderiardakani, F.; Liu, X.; Camara, M.; Coates, J. C.

10.1101/839001 — plant biology — Posted on 2019-11-12

2265 Principles of tactile search over the body

Halfen, E. J.; Magnotti, J. F.; Rahman, M. S.; Yau, J. M.

10.1101/839084 — neuroscience — Posted on 2019-11-12

2266 Correlations in population dynamics in multi-component networks

Saraf, S.; Young, L.-S.

10.1101/839019 — neuroscience — Posted on 2019-11-12

2267 Cell-type specific asynchronous modulation of PKA by dopamine during reward based learning

Lee, S. J.; Lodder, B.; Chen, Y.; Patriarchi, T.; Tian, L.; Sabatini, B.

10.1101/839035 — neuroscience — Posted on 2019-11-12

2268 Synapsin is required for dense core vesicle capture and cAMP-dependent neuropeptide release

Yu, S.-c.; Steuer Costa, W.; Liewald, J. F.; Shao, J.; Gottschalk, A.

10.1101/838953 — neuroscience — Posted on 2019-11-12

2269 Transcranial Near-Infrared Light: Dose-Dependent Effects on EEG Oscillations but not Cerebral Blood Flow

Spera, V.; Sitnikova, T.; Ward, M. J.; farzam, p.; Hughes, J. W.; Bui, E.; maiello, m.; Taboada, L. D.; Hamblin, M. R.; Franceschini, M. A.; Cassano, P.

10.1101/837591 — neuroscience — Posted on 2019-11-12

2270 Cellular life from the three domains and viruses are transcriptionally active in a hypersaline desert community

Uritskiy, G.; Tisza, M. J.; Gelsinger, D.; Munn, A.; Taylor, J.; DiRuggiero, J.

10.1101/839134 — microbiology — Posted on 2019-11-12

2271 The urinary tract microbiome in older women exhibits host genetics and environmental influences

Adebayo, A. S.; Ackermann, G.; Bowyer, R. C. E.; Wells, P. M.; Humphrey, G.; Knight, R.; Spector, T. D.; Steves, C. J.

10.1101/838367 — microbiology — Posted on 2019-11-12

2272 HIP IMO Report: Analyzing Phenotypic Properties of Bladder Cancer Using Ordinary Differential Equation (ODE) Models

Sherwin, B. C.

10.1101/839209 — cancer biology — Posted on 2019-11-12

2273 Visualization of the HIV-1 Env Glycan Shield Across Scales

Berndsen, Z. T.; Chakraborty, S.; Wang, X.; Cottrell, C. A.; Torres, J. L.; Diedrich, J. K.; Lopez, C.; Yates, J. R.; van-Gils, M. J.; Paulson, J. C.; Gnanakaran, S.; Ward, A. B.

10.1101/839217 — biophysics — Posted on 2019-11-12

2274 Tool recommender system in Galaxy using deep learning

Kumar, A.; Gruening, B.; Backofen, R.

10.1101/838599 — bioinformatics — Posted on 2019-11-12

2275 Topaz-Denoise: general deep denoising models for cryoEM

Bepler, T.; Noble, A. J.; Berger, B.

10.1101/838920 — bioinformatics — Posted on 2019-11-12

2276 Genetically encoded phase contrast agents for digital holographic microscopy

Farhadi, A.; Bedrossian, M.; Lee, J.; Ho, G. H.; Shapiro, M. G.; Nadeau, J.

10.1101/833830 — bioengineering — Posted on 2019-11-12

2277 Balancing skill against difficulty - behavior, heart rate and heart rate variability of shelter dogs during two different introductions of an interactive game

Arhant, C.; Altrichter, B.; Lehenbauer, S.; Waiblinger, S.; Schmied-Wagner, C.; Yee, J. R.

10.1101/838524 — animal behavior and cognition — Posted on 2019-11-12

2278 Molecular and Circuit Architecture of Social Hierarchy

Nelson, A. C.; Kapoor, V.; Vaughn, E.; Gnanasegaram, J.; Rubinstein, N.; Murthy, V. N.; Dulac, C.

10.1101/838664 — neuroscience — Posted on 2019-11-12

2279 Covert spatial attention speeds target individuation

Foster, J. J.; Bsales, E. M.; Awh, E.

10.1101/838557 — neuroscience — Posted on 2019-11-12

2280 Different α2δ Accessory Subunits Regulate Distinctly Different Aspects of Calcium Channel Function in the Same Drosophila Neurons

Heinrich, L.; Ryglewski, S.

10.1101/838565 — neuroscience — Posted on 2019-11-12

2281 Training deep neural density estimators to identify mechanistic models of neural dynamics

Goncalves, P. J.; Lueckmann, J.-M.; Deistler, M.; Nonnenmacher, M.; Öcal, K.; Bassetto, G.; Chintaluri, C.; Podlaski, W. F.; Haddad, S. A.; Vogels, T. P.; Greenberg, D. S.; Macke, J. H.

10.1101/838383 — neuroscience — Posted on 2019-11-12

2282 Elevated polygenic burden for ASD is associated with the broad autism phenotype

Nayar, K.; Sealock, J. M.; Maltman, N.; Bush, L.; Cook, E. H.; Davis, L. K.; Losh, M.

10.1101/838375 — genetics — Posted on 2019-11-12

2283 Synthetic soil crusts against green-desert transitions: a spatial model

Vidiella Rocamora, B.; Sardanyes, J.; Sole, R.

10.1101/838631 — bioengineering — Posted on 2019-11-12

2284 Computational analysis of filament polymerization dynamics in cytoskeletal networks

Caldas, P.; Radler, P.; Sommer, C.; Loose, M.

10.1101/839571 — biochemistry — Posted on 2019-11-12

2285 Suramin potently inhibits binding of the mammalian high mobility group protein AT-hook 2 to DNA

Su, L.; Bryan, N.; Battista, S.; Freitas, J.; Garabedian, A.; DAlessio, F.; Romano, M.; Falanga, F.; Fusco, A.; Kos, L.; Chambers, J.; Fernandez-Lima, F.; Chapagain, P. P.; Vasile, S.; Smith, L.; Leng, F.

10.1101/838656 — biochemistry — Posted on 2019-11-12

2286 Sex identification of ancient pinnipeds using the dog genome

Bro-Joergensen, M. H.; Keighley, X.; Ahlgren, H.; Scharff-Olsen, C. H.; Rosing-Asvid, A.; Dietz, R.; Ferguson, S. H.; Gotfredsen, A. B.; Jordan, P.; Glykou, A.; Liden, K.; Olsen, M. T.

10.1101/838797 — genomics — Posted on 2019-11-12

2287 RASflow: An RNA-Seq Analysis Workflow with Snakemake

Zhang, X.; Jonassen, I.

10.1101/839191 — bioinformatics — Posted on 2019-11-12

2288 The effect of proximity on the function and energy transfer capability of fluorescent protein pairs

Pope, J.; Johnson, R.; Jamieson, W. D.; Worthy, H.; Kailasam, S.; Auhim, H.; Watkins, D.; Rizkallah, P.; Castell, O.; Jones, D.

10.1101/838888 — biochemistry — Posted on 2019-11-12

2289 Mechanism of the secretion of the lanthipeptide nisin

Lagedroste, M.; Reiners, J.; Smits, S. H.; Schmitt, L.

10.1101/839423 — biochemistry — Posted on 2019-11-12

2290 In vivo nuclear RNA structurome reveals RNA-structure regulation of mRNA processing in plants

DING, Y.; Liu, Z.; Liu, Q.; Yang, X.; Zhang, Y.; Norris, M.; Chen, X.; Cheema, J.

10.1101/839506 — plant biology — Posted on 2019-11-12

2291 RNA G-quadruplex structures exist and function in vivo

Yang, X.; Cheema, J.; Zhang, Y.; Deng, H.; Duncan, S.; Umar, M. I.; Zhao, J.; Liu, Q.; Cao, X.; Kwok, C. K.; DING, Y.

10.1101/839621 — plant biology — Posted on 2019-11-12

2292 PHGDH supports liver ceramide synthesis and sustains lipid homeostasis

Kang, Y. P.; Falzone, A.; Liu, M.; Saller, J. J.; Karreth, F. A.; DeNicola, G. M.

10.1101/838482 — biochemistry — Posted on 2019-11-12

2293 Aire-dependent genes undergo Clp1-mediated 3’UTR shortening associated with higher transcript stability in the thymus

Guyon, C.; Jmari, N.; Padonou, F.; Yen-Chin, L.; Ucar, O.; Fujikado, N.; Coulpier, F.; Blanchet, C.; Root, D. E.; Giraud, M.

10.1101/837880 — genomics — Posted on 2019-11-12

2294 Fat food exacerbates post-prandial hypothalamic inflammation involving GFAP+ cells and microglia

Cansell, C.; Stobbe, K.; Le Thuc, O.; Mosser, C.-A.; Ben-Fradj, S.; Leredde, J.; Lebeaupin, C.; Debayle, D.; Fleuriot, L.; Brau, F.; Devaux, N.; Benani, A.; Audinat, E.; Blondeau, N.; Nahon, J.-L.; Rovere, C.

10.1101/835967 — neuroscience — Posted on 2019-11-12

2295 Tuberculosis-associated IFN-I induces Siglec-1 on tunneling nanotubes and favors HIV-1 spread in macrophages

Verollet, C.; Dupont, M.; Souriant, S.; Balboa, L.; Phong, T.; Pingris, K.; Rousset, S.; Cougoule, C.; Romboust, Y.; Poincloux, R.; Ben Neji, M.; Allers, C.; Kaushal, D.; Kuroda, M. J.; Benet, S.; Martinez-Picado, J.; Izquierdo-Useros, N.; Sasiain, M. d. C.; Maridonneau-Parini, I.; Neyrolles, O.; Lugo-Villarino, G.

10.1101/836155 — cell biology — Posted on 2019-11-12

2296 A deregulated stress response underlies distinct INF2 associated disease profiles

Bayraktar, S.; Nehrig, J.; Menis, E.; Karli, K.; Janning, A.; Struk, T.; Halbritter, J.; Michgehl, U.; Krahn, M. P.; Schuberth, C.; Pavenstädt, H.; Wedlich-Soldner, R.

10.1101/838086 — cell biology — Posted on 2019-11-12

2297 Vibrio deploys Type 2 secreted lipase to esterify cholesterol with host fatty acids and mediate cell egress

de Souza Santos, M.; Chimalapati, S.; Ray, A.; Lee, W.-R.; Rivera-Cancel, G.; Lafrance, A.; Vale, G.; Mitsche, M.; McDonald, J. G.; Liou, J.; Orth, K.

10.1101/835777 — microbiology — Posted on 2019-11-12

2298 Promotion of hyperthermic-induced rDNA hypercondensation in Saccharomyces cerevisiae

Shen, D.; Skibbens, R. V.

10.1101/838821 — cell biology — Posted on 2019-11-12

2299 In silico and in vitro Investigations of Antihelmintic Activities of some Selected Approved Drugs

Agube, A. C.; Ajaghaku, D. L.; Uzochukwu, I. C.

10.1101/837427 — cell biology — Posted on 2019-11-12

2300 Regulation of nerve growth and patterning by cell surface protein disulphide isomerase

Cook, G. M. W.; Sousa, C.; Schaeffer, J.; Wiles, K.; Jareonsettasin, P.; Kalyanasundaram, A.; Walder, E.; Casper, C.; Patel, S.; Chua, P. W.; Riboni-Verri, G.; Raza, M.; Swaddiwudhipong, N.; Hui, A.; Abdullah, A.; Wajed, S.; Keynes, R.

10.1101/838771 — developmental biology — Posted on 2019-11-12

2301 Cavin1 intrinsically disordered domains are essential for fuzzy electrostatic interactions and caveola formation

Tillu, V.; Rae, J.; Gao, Y.; Ariotti, N.; Floetenmeyer, M.; Kovtun, O.; McMahon, K.-A.; Parton, R. G.; Collins, B. M.

10.1101/831149 — cell biology — Posted on 2019-11-12

2302 SOX9 is required for kidney fibrosis and regulates NAV3 to control renal myofibroblast function in mice and humans

Raza, S.; Jokl, E.; Pritchett, J.; Martin, K.; Su, K.; Simpson, K.; Mullan, A.; Athwal, V.; Doherty, D.; Zeef, L.; Henderson, N.; Kalra, P.; Hanley, N.; Piper Hanley, K.

10.1101/838441 — cell biology — Posted on 2019-11-12

2303 Parameter identifiability analysis for spatiotemporal models of cell invasion

Simpson, M. J.; Baker, r. E.; Vittadello, S. T.; Maclaren, O.

10.1101/839282 — cell biology — Posted on 2019-11-12

2304 6mer seed toxicity in viral microRNAs

Murmann, A. E.; Bartom, E. T.; Schipma, M. J.; Vilker, J.; Chen, S.; Peter, M. E.

10.1101/838979 — cell biology — Posted on 2019-11-12

2305 Predicting master transcription factors from pan-cancer expression data

Reddy, J.; Fonseca, M. A. S.; Corona, R. I.; Nameki, R.; Segato Dezem, F.; Klein, I. A.; Chang, H.; Chaves-Moreira, D.; Afeyan, L.; Malta, T. M.; Lin, X.; Abbasi, F.; Font-Tello, A.; Sabedot, T.; Cejas, P.; Rodriguez-Malave, N.; Seo, J.-H.; Lin, D.-C.; Matulonis, U.; Karlan, B. Y.; Gayther, S. A.; Gusev, A.; Noushmehr, H.; Long, H.; Freedman, M. L.; Drapkin, R.; Abraham, B. J.; Young, R. A.; Lawrenson, K.

10.1101/839142 — cancer biology — Posted on 2019-11-12

2306 Integrated Proteomics Reveals Brain-Based Cerebrospinal Fluid Biomarkers in Asymptomatic and Symptomatic Alzheimer’s Disease

Higginbotham, L.; Ping, L.; Dammer, E. B.; Duong, D. M.; Zhou, M.; Gearing, M.; Johnson, E. C. B.; Hajjar, I.; Lah, J. J.; Levey, A. I.; Seyfried, N. T.

10.1101/806752 — systems biology — Posted on 2019-11-12

2307 Antiretroviral APOBEC3 Cytidine Deaminases Alter HIV-1 Provirus Integration Site Profiles

Ajoge, H. O.; Renner, T. M.; Belanger, K.; Kohio, H. P.; Coleman, M. D.; Langlois, M.-A.; Barr, S. D.

10.1101/833475 — microbiology — Posted on 2019-11-12

2308 Ancient Yersinia pestis genomes provide no evidence for the origins or spread of the Justinianic Plague

Keller, M.; Spyrou, M. A.; McCormick, M.; Bos, K. I.; Herbig, A.; Krause, J.

10.1101/819698 — evolutionary biology — Posted on 2019-11-12

2309 Reduced Auditory Steady State Responses in Autism Spectrum Disorder

Seymour, R. A.; Rippon, G.; Gooding-Williams, G.; Sowman, P. F.; Kessler, K.

10.1101/837633 — neuroscience — Posted on 2019-11-12

2310 Polypyrimidine Tract Binding Proteins are essential for B cell development

Monzon-Casanova, E.; Matheson, L. S.; Tabbada, K.; Zarnack, K.; Smith, C. W. J.; Turner, M.

10.1101/769141 — immunology — Posted on 2019-11-12

2311 Sex differentiation and a chromosomal inversion lead to cryptic diversity in Lake Tanganyika sardines

Junker, J.; Rick, J. A.; McIntyre, P. B.; Kimirei, I.; Sweke, E. A.; Mosille, J. B.; Wehrli, B.; Dinkel, C.; Mwaiko, S.; Seehausen, O.; Wagner, C. E.

10.1101/800904 — evolutionary biology — Posted on 2019-11-12

2312 Persistent loss of biologically-rich tropical forests in the Indian Eastern Himalaya

Sheth, C.; Parashuram, D.; Datta, A.

10.1101/827360 — ecology — Posted on 2019-11-12

2313 LFMD: detecting low-frequency mutations in high-depth genome sequencing data without molecular tags

Ye, R.; Ruan, J.; Zhuang, X.; Qi, Y.; An, Y.; Xu, J.; Mak, T.; Liu, X.; Zhang, X.; Yang, H.; Xu, X.; Baum, L.; Nie, C.; Sham, P. C.

10.1101/617381 — bioinformatics — Posted on 2019-11-12

2314 An epigenetic clock for human skeletal muscle

Voisin, S.; Harvey, N. R.; Haupt, L. M.; Griffiths, L. R.; Ashton, K. J.; Coffey, V. G.; Doering, T. M.; Benedict, C.; Cedernaes, J.; Lindholm, M. E.; Craig, J. M.; Rowlands, D. S.; Sharples, A. P.; Horvath, S.; Eynon, N.

10.1101/821009 — bioinformatics — Posted on 2019-11-12

2315 An insulin-stimulated proteolytic mechanism links energy expenditure with glucose uptake

Habtemichael, E. N.; Li, D. T.; Camporez, J. P.; Westergaard, X. O.; Sales, C. I.; Liu, X.; Lopez-Giraldez, F.; DeVries, S. G.; Li, H.; Ruiz, D. M.; Wang, K. Y.; Sayal, B. S.; Hirabara, S.; Vatner, D. F.; Philbrick, W.; Shulman, G. I.; Bogan, J. S.

10.1101/817049 — physiology — Posted on 2019-11-12

2316 Inverse Transformed Encoding Models - a solution to the problem of correlated trial-by-trial parameter estimates in fMRI decoding

Soch, J.; Allefeld, C.; Haynes, J.-D.

10.1101/610626 — neuroscience — Posted on 2019-11-12

2317 Shared dynamic functional connectivity across schizophrenia, bipolar disorder and major depressive disorder

Li, C.; Xu, K.; Dong, M.; Wei, Y.; Duan, J.; Han, S.; Feng, R.; Chen, Y.; Zhang, L.; Jiang, X.; Wei, S.; Chen, H.; Tang, Y.; Wang, F.

10.1101/670562 — neuroscience — Posted on 2019-11-12

2318 Early removal of senescent cells protects retinal ganglion cells loss in experimental ocular hypertension.

Rocha, L. R.; Nguyen Huu, V. A.; Palomino La torre, C.; Xu, Q.; Jabari, M.; Krawczyk, M.; Weinreb, R. N.; Skowronska-Krawczyk, D.

10.1101/684811 — molecular biology — Posted on 2019-11-12

2319 Comprehensive genomic analysis reveals dynamic evolution of endogenous retroviruses that code for retroviral-like protein domains

Ueda, M. T.; Kryukov, K.; Mitsuhashi, S.; Mitsuhashi, H.; Imanishi, T.; Nakagawa, S.

10.1101/628875 — genomics — Posted on 2019-11-12

2320 The SHAPE of logistic growth shows that serial passaging reduces repeatability

Dench, J.

10.1101/392944 — bioinformatics — Posted on 2019-11-12

2321 Chrysin, but not the flavone backbone, decreases anxiety-like behavior in animal tests

Ponciano, L. J.; Costa, B. P.; Feitosa, L. M.; Campos, K. S.; Chaves, S. N.; Cueto-Escobedo, J.; Lima-Maximino, M. G.; Rodriguez-Landa, J. F.; Maximino, C.

10.1101/575514 — pharmacology and toxicology — Posted on 2019-11-12

2322 Identification of novel mutational signatures in Asian oral squamous cell carcinomas associated with bacterial infections

Boot, A.; Ng, A. W. T.; Chong, F. T.; Ho, S.-C.; Yu, W.; Tan, D. S. W.; Iyer, N. G.; Rozen, S. G.

10.1101/368753 — genomics — Posted on 2019-11-12

2323 Pathogen evolution when transmission and virulence are stochastic

Aavani, P.; Rice, S. H.

10.1101/584425 — evolutionary biology — Posted on 2019-11-12

2324 Adhesion modulates cell morphology and migration within dense fibrous networks

Moreira-Soares, M.; Cunha, S. P.; Bordin, J. R.; Travasso, R. D. M.

10.1101/838995 — biophysics — Posted on 2019-11-12

2325 Purification and molecular characterization of phospholipase, antigen 5 and hyaluronidases from the venom of the Asian hornet (Vespa velutina)

MONSALVE, R. I.; GUTIERREZ, R.; HOOF, I.; LOMBARDERO, M.

10.1101/838672 — biochemistry — Posted on 2019-11-12

2326 A big-data approach to understanding metabolic rate and response to obesity in laboratory mice

Corrigan, J. K.; Ramachandran, D.; He, Y.; Palmer, C.; Jurczak, M. J.; Li, B.; Friedline, R. H.; Kim, J. K.; Ramsey, J. J.; Lantier, L.; McGuinness, O. P.; Banks, A. S.; Mouse Metabolic Phenotyping Center Energy Balance Working Group,

10.1101/839076 — physiology — Posted on 2019-11-12

2327 Proposed mechanism of kinesin backstepping

Toleikis, A.; Carter, N. J.; Cross, R. A.

10.1101/838433 — biophysics — Posted on 2019-11-12

2328 An anti-adhesive surface coating reduces adhesion during contact with cribellar threads in Pholcus phalangioides (Araneae, Pholcidae) but not in the web-owning spider Uloborus plumipes (Araneae, Uloboridae)

Frutiger, M. J.; Kropf, C.

10.1101/838250 — zoology — Posted on 2019-11-11

2329 Division of labor in metabolic regulation by transcription, translation, acetylation and phosphorylation

Chandrasekaran, S.

10.1101/838243 — systems biology — Posted on 2019-11-11

2330 Experimental and simulated CO2 responses of photosynthesis in leaves of Hippophae rhamnoides L. under different soil water conditions

wu, q.; li, c.; chen, q.

10.1101/838284 — plant biology — Posted on 2019-11-11

2331 Subjective value then confidence in human ventromedial prefrontal cortex

Shapiro, A.; Grafton, S.

10.1101/838276 — neuroscience — Posted on 2019-11-11

2332 An indigenous Saccharomyces uvarum population with high genetic diversity dominates uninoculated Chardonnay fermentations at a Canadian winery

McCarthy, G. C.; Morgan, S. C.; Martiniuk, J. T.; Newman, B. L.; Measday, V.; Durall, D. M.

10.1101/838268 — microbiology — Posted on 2019-11-11

2333 Dispersal patterns of Trypanosoma cruzi in Arequipa, Peru

Berry, A. S. F.; Salazar-Sanchez, R.; Castillo-Neyra, R.; Borrini-Mayori, K.; Arevalo-Nieto, C.; Chipana-Ramos, C.; Vargas-Maquera, M.; Ancca-Juarez, J.; Naquira-Velarde, C.; Levy, M. Z.; Brisson, D.

10.1101/838235 — evolutionary biology — Posted on 2019-11-11

2334 Cytochrome c as a facultative enzyme – lipoperoxidase and it’s inhibition by antioxidants

Romodin, L. A.; Vladimirov, Y. A.; Lysenko, N. P.; Chernetsov, V. B.; Antonova, E.

10.1101/838540 — biophysics — Posted on 2019-11-11

2335 TorsinB overexpression prevents abnormal twisting in DYT1 dystonia mouse models

Li, J.; Liang, C.-C.; Pappas, S. S.; Dauer, W. T.

10.1101/836536 — neuroscience — Posted on 2019-11-11

2336 Mechanical Suppression of Breast Cancer Cell Invasion and Paracrine Signaling Requires Nucleo-Cytoskeletal Connectivity

Yi, X.; Wright, L. E.; Pagnotti, G. M.; Uzer, G.; Powell, K. M.; Wallace, J. M.; Sankar, U.; Rubin, C. T.; Mohammad, K.; Guise, T. A.; Thompson, W. R.

10.1101/838359 — cancer biology — Posted on 2019-11-11

2337 Imatinib overrides taxane resistance by selective inhibition of novel CLIP1 variant obstructing the microtubule pore

Kita, K.; Thakkar, P. V.; Galletti, G.; Madhukar, N.; Navarro, E. V.; Barasoain, I.; Goodson, H. V.; Sackett, D.; Diaz, J. F.; Elemento, O.; Shah, M. A.; Giannakakou, P.

10.1101/838334 — cancer biology — Posted on 2019-11-11

2338 Design of Ceramic Packages for Acoustically Coupled Implantable Medical Devices

Shen, K.; Maharbiz, M. M.

10.1101/836312 — bioengineering — Posted on 2019-11-11

2339 Interrogating theoretical models of neural computation with deep inference

Bittner, S. R.; Palmigiano, A.; Piet, A. T.; Duan, C. A.; Brody, C. D.; Miller, K. D.; Cunningham, J. P.

10.1101/837567 — neuroscience — Posted on 2019-11-11

2340 Comparative genomics identifies rapidly evolving ion transport genes in a saline-alkaline lake-dwelling Schizothoracine fish

Tong, C.; Li, M.

10.1101/825885 — genomics — Posted on 2019-11-11

2341 \"Ghost ponds\" - How to resurrect in-filled farmland ponds to assist aquatic biodiversity conservation in agricultural landscapes

Alderton, E.; Sayer, C. D.; Axmacher, J. C.; Patmore, I. R.; Burningham, H.; Brown, P.; Nobes, G.

10.1101/831859 — ecology — Posted on 2019-11-11

2342 The immunocytokine L19-TNF eradicates Sarcomas in combination with Chemotherapy or with immune check-point inhibitors

Corbellari, R.; Villa, A.; Neri, D.; De Luca, R.

10.1101/830406 — cancer biology — Posted on 2019-11-11

2343 Integrated effect of plant growth regulators with boron sources on some biological parameters of sugar beet

Qotb, M. A.; Habashy, N. R.

10.1101/839068 — biochemistry — Posted on 2019-11-11

2344 Tuberculosis resistance acquisition in space and time: an analysis of globally diverse M. tuberculosis whole genome sequences

Ektefaie, Y.; Dixit, A.; Freschi, L.; Farhat, M. R.

10.1101/837096 — bioinformatics — Posted on 2019-11-11

2345 A Graph Auto-Encoder for Haplotype Assembly and Viral Quasispecies Reconstruction

Ke, Z.; Vikalo, H.

10.1101/837674 — bioinformatics — Posted on 2019-11-11

2346 The accumulation of chloroplast small RNAs in unicellular alga Chlamydomonas reinhardtii is affected by nitrogen deprivation

Che Ani, S.; Azzam, G.; Najimudin, N.

10.1101/839092 — plant biology — Posted on 2019-11-11

2347 Decoding the multimorbidities among psychiatric disorders and cognitive functioning

Golovina, E.; Vickers, M. H.; Erb, C. D.; O'Sullivan, J. M.

10.1101/837914 — neuroscience — Posted on 2019-11-11

2348 Pulsed electric fields create pores in the voltage sensors of voltage-gated ion channels

Rems, L.; Kasimova, M.; Testa, I.; Delemotte, L.

10.1101/838474 — biophysics — Posted on 2019-11-11

2349 Identification of a small molecule antagonist for the Tudor domain of SMN

Liu, Y.; Iqbal, A.; Li, W.; Ni, Z.; Zhao, D. Y.; Abraham, K. J.; Tempel, W.; Guo, X.; Zhou, M.; Brown, P. J.; Qin, S.; Mekhail, K.; Greenblatt, J. F.; Min, J.

10.1101/829689 — biochemistry — Posted on 2019-11-11

2350 Sensory Neurons Innervate Peripheral Lymph Nodes and Locally Regulate Gene Expression in Postsynaptic Endothelium, Stromal Cells, and Innate Leukocytes

Huang, S.; Ziegler, C. G. K.; Austin, J.; Mannoun, N.; Vukovic, M.; Ordovas-Montanes, J.; Shalek, A. K.; von Andrian, U. H.

10.1101/833509 — immunology — Posted on 2019-11-11

2351 Hidden impacts of environmental stressors on freshwater: Cytoscape(R) correlation networks for community ecotoxicology analysis.

Lozano, V. L.

10.1101/834622 — ecology — Posted on 2019-11-11

2352 IMPDH inhibitors for anti-tumor therapy in tuberous sclerosis complex

Valvezan, A. J.; Miller, S. K.; McNamara, M. C.; Torrence, M. E.; Asara, J. M.; Henske, E. P.; Manning, B. D.

10.1101/835199 — cancer biology — Posted on 2019-11-11

2353 Potpourri: An Epistasis Test Prioritization Algorithm via Diverse SNP Selection

Caylak, G.; Tastan, O.; Cicek, A. E.

10.1101/830216 — bioinformatics — Posted on 2019-11-11

2354 Protein thermal stability does not correlate with cellular half-life: Global observations and a case study of tripeptidyl-peptidase 1

Collier, A. M.; Nemtsova, Y.; Kuber, N.; Banach-Petrosky, W.; Modak, A.; Sleat, D. E.; Nanda, V.; Lobel, P.

10.1101/828509 — biochemistry — Posted on 2019-11-11

2355 An integrated personal and population-based Egyptian genome reference

Wohlers, I.; Kuenstner, A.; Munz, M.; Olbrich, M.; Faehnrich, A.; Ma, C.; Hirose, M.; El-Mosallamy, S.; Salama, M.; Busch, H.; Ibrahim, S.

10.1101/681254 — genetics — Posted on 2019-11-11

2356 Assessing the analytical validity of SNP-chips for detecting very rare pathogenic variants: implications for direct-to-consumer genetic testing

Weedon, M. N.; Jackson, L.; Harrison, J. W.; Ruth, K. S.; Tyrrell, J.; Hattersley, A. T.; Wright, C. F.

10.1101/696799 — genetics — Posted on 2019-11-11

2357 BlackSheep: A Bioconductor and Bioconda package for differential extreme value analysis

Blumenberg, L.; Kawaler, E.; Cornwell, M.; Smith, S.; Ruggles, K.; Fenyo, D.

10.1101/825067 — bioinformatics — Posted on 2019-11-11

2358 Short Neuropeptide F regulates the starvation mediated enhanced locomotor Activity in Drosophila

Geo, A.; Pathak, H.; Kujur, A. E.; Sudhakar, S. R.; N Kannan, N. N.

10.1101/764688 — animal behavior and cognition — Posted on 2019-11-11

2359 Pleiotropy or linkage? Their relative contributions to the genetic correlation of quantitative traits and detection by multi-trait GWA studies

Chebib, J.; Guillaume, F.

10.1101/656413 — evolutionary biology — Posted on 2019-11-11

2360 Single-Cell Signalling Analysis of Heterocellular Organoids

Qin, X.; Sufi, J.; Vlckova, P.; Kyriakidou, P.; Acton, S. E.; Li, V. S. W.; Nitz, M.; Tape, C. J.

10.1101/659896 — cell biology — Posted on 2019-11-11

2361 Damped oscillations of the probability of random events followed by absolute refractory period

Paraskevov, A. V.; Minkin, A. S.

10.1101/649392 — neuroscience — Posted on 2019-11-11

2362 Lysophosphatidic acid provokes fibroblast chemotaxis through combinatorial regulation of myosin II

Asokan, S.; Johnson, H.; Sondek, J.; Shutova, M.; Svitkina, T.; Haugh, J.; Bear, J.

10.1101/355610 — cell biology — Posted on 2019-11-11

2363 Artificial Microbiome-Selection to Engineer Microbiomes That Confer Salt-Tolerance to Plants

Mueller, U. G.; Juenger, T.; Kardish, M.; Carlson, A.; Burns, K.; Edwards, J. A.; Smith, C.; Fang, C.-C.; De Marais, D.

10.1101/081521 — plant biology — Posted on 2019-11-11

2364 Revealing the neural networks that extract conceptual gestalts from continuously evolving or changing semantic contexts

Branzi, F. M.; Humphreys, G.; Hoffman, P.; Lambon Ralph, M.

10.1101/666370 — neuroscience — Posted on 2019-11-11

2365 Synteny-based analyses indicate that sequence divergence is not the main source of orphan genes

Vakirlis, N.; Carvunis, A.-R.; McLysaght, A.

10.1101/735175 — evolutionary biology — Posted on 2019-11-11

2366 Mouse navigation strategies for odor source localization

Liu, A.; Papale, A.; Hengenius, J.; Patel, K.; Ermentrout, B.; Urban, N.

10.1101/558643 — neuroscience — Posted on 2019-11-11

2367 Precise coupling of the thalamic head-direction system to hippocampal ripples.

Viejo, G.; Peyrache, A.

10.1101/809657 — neuroscience — Posted on 2019-11-11

2368 Teleost fish can accurately estimate distance travelled

Karlsson, C.; Willis, J.; Patel, M.; Burt de Perera, T.

10.1101/834341 — animal behavior and cognition — Posted on 2019-11-11

2369 Cell-type Specific Learning of Attentional Gating in Primate Striatum

Banaie Boroujeni, K.; Hassani, S.-A.; Oemisch, M.; Womelsdorf, T.

10.1101/837740 — neuroscience — Posted on 2019-11-11

2370 Cellular and synaptic adaptations of neural circuits processing skylight polarization in the fly

Sancer, G.; Kind, E.; Uhlhorn, J.; Volkmann, J.; Hammacher, J.; Pham, T.; Plazaola-Sasieta, H.; Wernet, M. F.

10.1101/838300 — neuroscience — Posted on 2019-11-11

2371 Attentional Modulation of the Auditory Steady-State Response across the Cortex

Manting, C. L.; Andersen, L. M.; Gulyas, B.; Ullen, F.; Lundqvist, D.

10.1101/836031 — neuroscience — Posted on 2019-11-11

2372 Multivariant HIV-1 infection in infants is associated with the induction of broadly neutralizing plasma antibodies.

Mishra, N.; Sharma, S.; Dobhal, A.; Kumar, S.; Singh, R.; Das, B. K.; Lodha, R.; Kabra, S. K.; Luthra, K.

10.1101/837039 — immunology — Posted on 2019-11-11

2373 piRNA clusters need a minimum size to control transposable element invasions

Kofler, R.

10.1101/838292 — evolutionary biology — Posted on 2019-11-11

2374 Revisiting use of DNA characters in taxonomy with MolD - a tree independent algorithm to retrieve diagnostic nucleotide characters from monolocus datasets

Fedosov, A.; Puillandre, N.; Achaz, G.

10.1101/838151 — bioinformatics — Posted on 2019-11-11

2375 Cerebellar neurodynamics during motor planning predict decision timing and outcome on single-trial level

Lin, Q.; Helmreich, M.; Schlumm, F.; Li, J.; Robson, D.; Engert, F.; Schier, A.; Noebauer, T.; Vaziri, A.

10.1101/833889 — neuroscience — Posted on 2019-11-11

2376 Genomic determinants of speciation

Cong, Q.; Zhang, J.; Grishin, N.

10.1101/837666 — evolutionary biology — Posted on 2019-11-11

2377 An epigenetic clock for skeletal muscle

10.1101/821009 — bioinformatics — Posted on 2019-11-11

2378 PharmOmics: A Species- and Tissue-specific Drug Signature Database and Online Tool for Toxicity Prediction and Drug Repurposing

CHEN, Y.-W.; Arneson, D.; Diamante, G.; Garcia, J.; Zaghari, N.; Patel, P.; Allard, P.; Yang, X.

10.1101/837773 — systems biology — Posted on 2019-11-11

2379 Antibiotic resistant and extended-spectrum β-lactamase producing faecal coliforms in wastewater treatment plant effluent

Smyth, C.; O'Flaherty, A.; Walsh, F.; Do, T. T.

10.1101/838136 — microbiology — Posted on 2019-11-11

2380 Asymmetric Hapln1a drives regionalised cardiac ECM expansion and promotes heart morphogenesis during zebrafish development

Derrick, C. J.; Sanchez-Posada, J.; Hussein, F.; Tessadori, F.; Pollitt, E. J.; Savage, A. M.; Wilkinson, R. N.; Chico, T. J.; van Eeden, F. J.; Bakkers, J.; Noël, E. S.

10.1101/838128 — developmental biology — Posted on 2019-11-11

2381 Shark: fishing in a sample to discard useless RNA-Seq reads

Bonizzoni, P.; Ceccato, T.; Della Vedova, G.; Denti, L.; Pirola, Y.; Previtali, M.; Rizzi, R.

10.1101/836130 — bioinformatics — Posted on 2019-11-11

2382 A random walk down personalized single-cell networks: predicting the response of any gene to any drug for any patient

Harikumar, H.; Quinn, T. P.; Rana, S.; Gupta, S.; Venkatesh, S.

10.1101/837807 — systems biology — Posted on 2019-11-11

2383 White Matter Denoising Improves the Identifiability of Large-Scale Networks and Reduces the Effects of Motion in fMRI Functional Connectivity

Kassinopoulos, M.; Mitsis, G. D.

10.1101/837609 — neuroscience — Posted on 2019-11-11

2384 Simultaneous assessment of P50, MMN, ERN and P300 event-related potentials among patients with Schizophrenia - an exploratory study

Sasidharan, A.; Nair, A. K.; Marigowda, V.; Lukose, A.; John, J. P.; Kutty, B. M.

10.1101/837815 — neuroscience — Posted on 2019-11-11

2385 The Hippo pathway origin and its oncogenic alteration in evolution

Chen, Y.; Han, H.; Seo, G.; Vargas, R.; Yang, B.; Chuc, K.; Zhao, H.; Wang, W.

10.1101/837500 — evolutionary biology — Posted on 2019-11-11

2386 Invasive in the North: New latitudinal record for Argentine ants in Europe

Charrier, P. N.; Hervet, C.; Bonsergent, C.; Charrier, M.; Malandrin, L.; Kauffmann, B.; Gippet, J. M.

10.1101/837583 — ecology — Posted on 2019-11-11

2387 Exploring Survival Models Associated with MCI to AD Conversion: A Machine Learning Approach

Orozco-Sanchez, J.; Trevino, V.; Martinez-Ledesma, E.; Farber, J.; Tamez-Pena, J.

10.1101/836510 — bioinformatics — Posted on 2019-11-11

2388 Administration of defective virus via bang-bang optimal control inhibits dengue transmission

Mapder, t.; Aaskov, J.; Burrage, K.

10.1101/837849 — systems biology — Posted on 2019-11-11

2389 A model of neuron-glia crosstalk explains stages of neural tissue resilience

Nold, A.; Batulin, D.; Birkner, K.; Bittner, S.; Tchumatchenko, T.

10.1101/828053 — systems biology — Posted on 2019-11-11

2390 The use of high throughput phenotyping for assessment of heat stress-induced changes in Arabidopsis

Gao, G.; Tester, M.; Julkowska, M. M.

10.1101/838102 — plant biology — Posted on 2019-11-11

2391 Atxn2-CAG100-KnockIn mouse spinal cord shows progressive TDP43 pathology associated with cholesterol biosynthesis suppression

Canet-Pons, J.; Sen, N.-E.; Arsovic, A.; Almaguer-Mederos, L.-E.; Halbach, M. V.; Key, J.; Doering, C.; Kerksiek, A.; Picchiarelli, G.; Cassel, R.; Rene, F.; Dieterle, S.; Hein-Fuchs, N.; Koenig, R.; Dupuis, L.; Luetjohann, D.; Gispert-Sanchez, S.; Auburger, G.

10.1101/838177 — neuroscience — Posted on 2019-11-11

2392 BceAB-type antibiotic resistance transporters appear to act by target protection of cell wall synthesis

Kobras, C. M.; Piepenbreier, H.; Emenegger, J.; Sim, A.; Fritz, G.; Gebhard, S.

10.1101/835702 — microbiology — Posted on 2019-11-11

2393 New peptides with immunomodulatory activity in macrophages and antibacterial activity against multiresistant Staphylococcus aureus

Barrero-Guevara, L. A.; Bolanos, N. I.; Parra, M. H.; Gonzalez, J. M.; Groot, H.; Munoz-Camargo, C.

10.1101/838201 — microbiology — Posted on 2019-11-11

2394 Transposon expression in the Drosophila brain is driven by neighbouring genes and diversifies the neural transcriptome

Treiber, C. D.; Waddell, S.

10.1101/838045 — genetics — Posted on 2019-11-11

2395 Plugging the hunger gap: Organic farming supports more abundant nutritional resources for bees at critical periods

Austin, A. J.; Lawson-Handley, L.; Gilbert, J.

10.1101/837625 — ecology — Posted on 2019-11-11

2396 Supplemented nutrition increases immunity and drug efficacy in a natural host-helminth system

Sweeny, A. R.; Clerc, M.; Pontifes, P. A.; Venkatesan, S.; Babayan, S. A.; Pedersen, A. B.

10.1101/837617 — ecology — Posted on 2019-11-11

2397 Angiocrine factors from HUVECs amplify erythroid cells

Sugimura, R.; Ohta, R.; Mori, C.; Sano, E.; Sugiyama, T.; Nagasawa, T.; Niwa, A.; Torisawa, Y.-s.; Saito, M. K.

10.1101/837823 — developmental biology — Posted on 2019-11-11

2398 A Hierarchical Model of the Hypothalamo-Adreno-Pituitary syste

la Rota, C.; Vuza, D. T.; Haulica, A.

10.1101/837724 — systems biology — Posted on 2019-11-11

2399 Multiplexed direct detection of barcoded protein reporters on a nanopore array

Cardozo, N.; Zhang, K.; Doroschak, K.; Nguyen, A.; Siddiqui, Z.; Strauss, K.; Ceze, L.; Nivala, J.

10.1101/837542 — synthetic biology — Posted on 2019-11-11

2400 Turn of Events: Academic events as a platform for preregistration

Brouwers, K. I. M.; Cooke, A.; Chambers, C. D.; Henson, R.; Tibon, R.

10.1101/833640 — scientific communication and education — Posted on 2019-11-11

2401 Chemical identification of 18-hydroxycarlactonoic acid as an LjMAX1 product and conversion of 18-hydroxylcarlactonoates to canonical and non-canonical strigolactones in Lotus japonicus

Mori, N.; Sado, A.; Xie, X.; Yoneyama, K.; Asami, K.; Seto, Y.; Nomura, T.; Yamaguchi, S.; Yoneyama, K.; Akiyama, K.

10.1101/837708 — plant biology — Posted on 2019-11-11

2402 Sleep time, social jetlag and intelligence: biology or work timing?

Ujma, P. P.; Baudson, T.; Bodizs, R.; Dresler, M.

10.1101/837443 — physiology — Posted on 2019-11-11

2403 Stress-induced myonectin improves glucose homeostasis by inhibiting glycemic response to HPA axis

Zhengtang, Q.; Xia, J.; Xue, X.; Liu, J.; Zhang, X.; Li, X.; Liu, W.; Cao, L.; Li, L.; Cui, Z.; Huang, Z.; Ji, B.; Zhang, Q.; Ding, S.; Liu, W.

10.1101/838003 — physiology — Posted on 2019-11-11

2404 Inter-hemispheric inhibition in stroke survivors is related to fatigue and cortical excitability

Ondobaka, S.; Ward, N.; Kuppuswamy, A.

10.1101/831511 — neuroscience — Posted on 2019-11-11

2405 A framework for closed-loop neurofeedback for real-time EEG decoding

Tuckute, G.; Hansen, S. T.; Kjaer, T. W.; Hansen, L. K.

10.1101/834713 — neuroscience — Posted on 2019-11-11

2406 Schizophrenia patients show aberrant brain dynamics associated with gestalt-perception and corollary discharge: Reflections from ERP and fMRI findings

Sasidharan, A.; Nair, A. K.; Marigowda, V.; Lukose, A.; John, J. P.; Kutty, B. M.

10.1101/837831 — neuroscience — Posted on 2019-11-11

2407 More evidence for a long-latency mismatch response in urethane-anaesthetised mice

O'Reilly, J. A.; Angsuwatanakul, T.

10.1101/837690 — neuroscience — Posted on 2019-11-11

2408 Reduced Auditory Steady State Responses in Autism Spectrum Disorder

Seymour, R. A.; Rippon, G.; Gooding-Williams, G.; Sowman, P. F.; Kessler, K. A.

10.1101/837633 — neuroscience — Posted on 2019-11-11

2409 Expecting social punishment facilitates control over a decision under uncertainty by recruiting medial prefrontal cortex

Kim, J.; Jeong, B.

10.1101/838037 — neuroscience — Posted on 2019-11-11

2410 Intrinsic DNA topology as a prioritization metric in genomic fine-mapping studies

Ainsworth, H. C.; Howard, T. D.; Langefeld, C. D.

10.1101/837245 — genetics — Posted on 2019-11-11

2411 Spatial heterogeneity of an ecologically relevant environment accelerates diversification and adaptation.

van Houte, S.; Padfield, D.; Gomez, P.; Lujan, A. M.; Brockhurst, M.; Paterson, S.; Buckling, A.

10.1101/838110 — ecology — Posted on 2019-11-11

2412 Diverse Species-Specific Phenotypic Consequences of Loss of Function Sorting Nexin 14 Mutations

Bryant, D.; Seda, M.; Peskett, E.; Maurer, C.; Pomeranz, G.; Gosh, M.; Hawkins, T. A.; Cleak, J.; Datta, S.; Hariri, H.; Eckert, K.; Jafree, D.; Walsh, C.; Demetriou, C.; Ishida, M.; Aleman-Charlet, C.; Vestito, L.; Seselgyte, R.; McDonald, J. G.; Bitner-Glindzicz, M.; Hemberger, M.; Rihel, J.; Teboul, L.; Henne, M. M.; Jenkins, D. M.; Moore, G.; Stanier, P.

10.1101/838052 — developmental biology — Posted on 2019-11-11

2413 Natural slab photonic crystals in centric diatoms

Goessling, J. W.; Wardley, W. P.; Lopez-Garcia, M.

10.1101/838185 — biophysics — Posted on 2019-11-11

2414 Dopamine role in learning and action inference

Bogacz, R.

10.1101/837641 — bioinformatics — Posted on 2019-11-11

2415 microRNA seedless sites attenuate strong-seed-site-mediated target repression

Wang, X.; Tian, J.; Cui, P.; Mastriano, S.; Zhang, D.; Zhao, H.; Lu, H.; Ding, Y.; Lu, J.

10.1101/837682 — bioinformatics — Posted on 2019-11-11

2416 ClinCNV: novel method for allele-specific somatic copy-number alterations detection

Demidov, G.; Ossowski, S.

10.1101/837971 — bioinformatics — Posted on 2019-11-11

2417 Biomimetic Aorta-Gonad-Mesonephros on-a-Chip to Study Human Developmental Hematopoiesis

Sugimura, R.; Ohta, R.; Mori, C.; Li, A.; Mano, T.; Sano, E.; Kosugi, K.; Nakahata, T.; Niwa, A.; Saito, M. K.; Torisawa, Y.-s.

10.1101/837856 — bioengineering — Posted on 2019-11-11

2418 Response learning confounds accurate assays of inhibitory control

van Horik, J. O.; Beardsworth, C. E.; Laker, P.; Whiteside, M. A.; Madden, J. R.

10.1101/838078 — animal behavior and cognition — Posted on 2019-11-11

2419 The mutational profile and clonal landscape of the inflammatory bowel disease affected colon

Olafsson, S.; McIntyre, R.; Coorens, T.; Butler, T. M.; Robinson, P.; Lee-Six, H.; Sanders, M.; Arestang, K.; Dawson, C.; Tripathi, M.; Strongili, K.; Hooks, Y.; Stratton, M. R.; Parkes, M.; Martincorena, I.; Raine, T.; Campbell, P.; Anderson, C.

10.1101/832014 — genetics — Posted on 2019-11-11

2420 Reply To: Molecular Brightness analysis of GPCR oligomerization in the presence of spatial heterogeneity

Biener, G.; Stoneman, M.; Raicu, V.

10.1101/822296 — biophysics — Posted on 2019-11-11

2421 Trading Mental Effort for Confidence: The Metacognitive Control of Value-Based Decision-Making

Lee, D.; Daunizeau, J.

10.1101/837054 — neuroscience — Posted on 2019-11-11

2422 Genome-wide association study of pain sensitivity assessed by questionnaire and the cold pressor test

Fontanillas, P.; Kless, A.; 23andMe Research Team, ; Bothmer, J.; Tung, J. Y.

10.1101/837526 — genetics — Posted on 2019-11-11

2423 Modulation of dopamine D1 receptors via histamine H3 receptors is a novel therapeutic target for Huntington’s disease

McCormick, P.; Gines, S.; Guzman, M.; Ferre, S.; Canela, E. I.; Chiarlone, A.; Casado, V.; Cortes, A.; Moreno, E.; Lluis, C.; Alberch, J.; Puigdellivol, M.; Scarselli, M.; Moreno, D.; Gasperini, P.; Botta, J.; Howell, L.

10.1101/837658 — neuroscience — Posted on 2019-11-11

2424 Disrupting HIV-1 capsid formation causes cGAS sensing of viral DNA

Sumner, R. P.; Harrison, L.; Touizer, E.; Peacock, T. P.; Spencer, M.; Zuliani-Alvarez, L.; Towers, G. J.

10.1101/838011 — microbiology — Posted on 2019-11-11

2425 Integrated Sequencing & Array Comparative Genomic Hybridization in Familial Parkinson’s Disease

Robak, L. A.; Du, R.; Yuan, B.; Gu, S.; Alfradique-Dunham, I.; Kondapalli, V.; Hinojosa, E.; Stillwell, A.; Young, E.; Zhang, C.; Song, X.; Du, H.; Gambin, T.; Jhangiani, S. N.; Coban Akdemir, Z.; Muzny, D. M.; Tejomurtula, A.; Ross, O. A.; Shaw, C.; Jankovic, J.; Bi, W.; Posey, J. E.; Lupski, J. R.; Shulman, J. M.

10.1101/828566 — genetics — Posted on 2019-11-11

2426 Historical abundance and distributions of Salpa thompsoni hot spots in the Southern Ocean, with projections for further ocean warming

Słomska, A. W.; Panasiuk, A.; Weydmann, A.; Wawrzynek, J.; Konik, M.; Siegel, V.

10.1101/496257 — animal behavior and cognition — Posted on 2019-11-11

2427 Synthetic gene regulatory networks in the opportunistic human pathogen Streptococcus pneumoniae

Sorg, R. A.; Gallay, C.; Veening, J.-W.

10.1101/834689 — microbiology — Posted on 2019-11-11

2428 Small circRNAs with self-cleaving ribozymes are frequently expressed in metazoan transcriptomes

Cervera, A.; De la Pena, M.

10.1101/721605 — genomics — Posted on 2019-11-11

2429 A Systems Approach Identifies Enhancer of Zeste Homolog 2 (EZH2) as a Protective Factor in Epilepsy

Khan, N.; Schoenike, B.; Grabenstatter, H.; Basu, T.; Rodriguez, G.; Sindic, C.; Johnson, M.; Wallace, E.; Maganti, R.; Dingledine, R.; Roopra, A.

10.1101/836387 — neuroscience — Posted on 2019-11-11

2430 Exploring the role of the metabolite-sensing receptor GPR109a in diabetic nephropathy

Snelson, M.; Tan, S. M.; Higgins, G. C.; Lindblom, R. S.; Coughlan, M. T.

10.1101/713354 — molecular biology — Posted on 2019-11-11

2431 Fucosyltransferase 4 shapes oncogenic glycoproteome to drive metastasis of lung adenocarcinoma

Lu, H.-H.; Lin, S.-Y.; Weng, R. R.; Juan, Y.-H.; Chen, Y.-W.; Hou, H.-H.; Hung, Z.-C.; Oswita, G. A.; Huang, Y.-J.; Shih, J.-Y.; Yu, C.-J.; Tsai, H.-C.

10.1101/752519 — cancer biology — Posted on 2019-11-11

2432 Genomic characterization of the non-O1/non-O139 Vibrio cholerae strain that caused a gastroenteritis outbreak in Santiago, Chile, 2018

Arteaga, M.; Velasco, J.; Rodriguez, S.; Vidal, M.; Arellano, C.; Silva, F.; Carreno, L. J.; Vidal, R. M.; Montero, D. A.

10.1101/835090 — microbiology — Posted on 2019-11-11

2433 Estimating and accounting for genotyping errors in RAD-seq experiments

Bresadola, L.; Link, V.; Buerkle, A.; Lexer, C.; Wegmann, D.

10.1101/587428 — evolutionary biology — Posted on 2019-11-11

2434 The Out of East Asia model versus the African Eve model of modern human origins in light of ancient mtDNA findings

Zhang, Y.; Huang, S.

10.1101/546234 — evolutionary biology — Posted on 2019-11-11

2435 Generalizing movement patterns following shoulder fixation

Maeda, R. S.; Zdybal, J. M.; Gribble, P. L.; Pruszynski, J. A.

10.1101/678623 — neuroscience — Posted on 2019-11-11

2436 A \"twisted\" visual field map in the primate cortex predicted by topographic continuity

Yu, H.-H.; Rowley, D. P.; Price, N. S. C.; Rosa, M.; Zavitz, E.

10.1101/682187 — neuroscience — Posted on 2019-11-11

2437 Biologically plausible mechanisms underlying motor response correction during reward-based decision-making

Lee, J. H.

10.1101/221770 — neuroscience — Posted on 2019-11-11

2438 High-density superresolution microscopy with an incoherent light source and a conventional epifluorescence microscope setup

Prakash, K.

10.1101/121061 — biophysics — Posted on 2019-11-11

2439 All of gene expression (AOE): an integrated index for public gene expression databases

Bono, H.

10.1101/626754 — bioinformatics — Posted on 2019-11-11

2440 A pilot study of behavioral, environmental, and occupational risk factors for chronic kidney disease of unknown etiology in Sri Lanka

Pry, J.; Jackson, W.; Rupasinghe, R.; Lishanthe, G.; Badurdeen, Z.; Abeysekara, T.; Chandrajith, R.; Smith, W.; Wickramasinghe, S.

10.1101/837393 — scientific communication and education — Posted on 2019-11-10

2441 Producing Human Amniotic Epithelial Cells-only Membrane for Transplantation

Guo, M.; Xu, C.; Ahmed, W.; Xie, L.; Peng, Y.; Wang, Q.

10.1101/837377 — bioengineering — Posted on 2019-11-10

2442 Physico-biochemical and molecular responses of Acacia auriculiformis to salinity stress

Gupta, D. B.; Banerjee, J.; Pramanik, K.; Das, A.; Pal, S.

10.1101/837351 — biochemistry — Posted on 2019-11-10

2443 A systematic evaluation of Mycobacterium tuberculosis Genome-Scale Metabolic Networks

Lopez-Agudelo, V. A.; Mendum, T. A.; Laing, E.; Baena, A.; Barrera, L. F.; Rios-Estepa, R.; Beste, D. J.

10.1101/837401 — systems biology — Posted on 2019-11-10

2444 The flow of sickle blood through glass capillaries: a point of care application

Brown, C. D.; Aprelev, A. M.; Ferrone, F.

10.1101/837369 — biophysics — Posted on 2019-11-10

2445 Identification of the Clostridial cellulose synthase and characterization of the cognate glycosyl hydrolase, CcsZ

Scott, W.; Lowrance, B.; Anderson, A. C.; Weadge, J.

10.1101/837344 — biochemistry — Posted on 2019-11-10

2446 De novo transcriptome sequence of Senna tora provides insights into anthraquinone biosynthesis

Kang, S.-H.; Lee, W.-H.; Lee, C.-M.; Sim, J.-S.; Won, S. Y.; Han, S.-R.; Kwon, S.-J.; Kim, J. S.; Kim, C.-K.; Oh, T.-J.

10.1101/837385 — plant biology — Posted on 2019-11-10

2447 Is the tryptophan codon of gene vif the Achilles heel of HIV-1?

Leal, E.; Villanova, F.; Barreiros, M.

10.1101/837419 — microbiology — Posted on 2019-11-10

2448 Three dimensional particle averaging for structural imaging of macromolecular complexes by localization microscopy

Rieger, B.; Stallinga, S.; Heydarian, H.; Schueder, F.; Jungmann, R.; Ries, J.; Przybylski, A.; Bates, M.; Keller-Findeisen, J.; van Werkhoven, B.

10.1101/837575 — molecular biology — Posted on 2019-11-10

2449 Accelerating functional gene discovery in osteoarthritis

Butterfield, N. C.; Curry, K. F.; Steinberg, J.; Dewhurst, H.; Komla-Ebri, D.; Mannan, N. S.; Adoum, A.-T.; Leitch, V. D.; Logan, J. G.; Waung, J. A.; Ghirardello, E.; Southam, L.; Youlten, S. E.; Wilkinson, J. M.; McAninch, E. A.; Vancollie, V. E.; Kussy, F.; White, J. K.; Adams, D. J.; Lelliott, C. J.; Jacques, R.; Bianco, A. C.; Boyde, A.; Zeggini, E.; Croucher, P. I.; Williams, G. R.; Bassett, J. H. D.

10.1101/836221 — genetics — Posted on 2019-11-10

2450 Reversion and non-reversion mechanisms of resistance to PARP inhibitor or platinum chemotherapy in BRCA1/2-mutant metastatic breast cancer

Waks, A. G.; Cohen, O.; Kochupurakkal, B.; Kim, D.; Dunn, C. E.; Buendia Buendia, J.; Wander, S.; Helvie, K.; Lloyd, M. R.; Marini, L.; Hughes, M. E.; Freeman, S. S.; Ivy, S. P.; Geradts, J.; Isakoff, S.; LoRusso, P.; Adalsteinsson, V. A.; Tolaney, S. M.; Matulonis, U.; Krop, I. E.; D'Andrea, A. D.; Winer, E. P.; Lin, N. U.; Shapiro, G. I.; Wagle, N.

10.1101/832717 — cancer biology — Posted on 2019-11-10

2451 Immune surveillance in clinical regression of pre-invasive squamous cell lung cancer

Pennycuick, A.; Teixeira, V. H.; AbdulJabbar, K.; Raza, S. E. A.; Lund, T.; Akarca, A.; Rosenthal, R.; Pipinikas, C. P.; Lee-Six, H.; Chandrasekharan, D. P.; Hynds, R. E.; Gowers, K. H. C.; Henry, J. Y.; Denais, C.; Falzon, M.; Antoniou, S.; Durrenberger, P. F.; Furness, A.; Carroll, B.; Thakrar, R. M.; George, P. J.; Marafioti, T.; Swanton, C.; Thirlwell, C.; Campbell, P. J.; Yuan, Y.; Quezada, S. A.; McGranahan, N.; Janes, S. M.

10.1101/833004 — cancer biology — Posted on 2019-11-10

2452 The macrophage-expressed gene (mpeg) 1 identifies a subpopulation of B cells in the adult zebrafish

Ferrero, G.; Gomez, E.; Iyer, S.; Rovira, M.; Miserocchi, M.; Langenau, D. M.; Bertrand, J. Y.; Wittamer, V.

10.1101/836098 — immunology — Posted on 2019-11-10

2453 Semaphorin 3a reduces the side effects of radiation on BMSCs by reducing ROS

Huang, B.; Tang, Y. h.; He, T.; Yang, Z.; Gong, P.

10.1101/837492 — cell biology — Posted on 2019-11-10

2454 Light-Sheet Fluorescence Microscopy with Scanning Non-diffracting Beams

Kafian, H.; Lalenejad, M.; Moradi-Mehr, S.; Akbari Birgani, S.; Abdollahpour, D.

10.1101/837328 — biophysics — Posted on 2019-11-10

2455 PCAGO: An interactive tool to analyze RNA-Seq data with principal component analysis

Gerst, R.; Hölzer, M.

10.1101/433078 — bioinformatics — Posted on 2019-11-10

2456 Missense variants in health and disease affect distinct functional pathways and proteomics features

Laddach, A.; Ng, J. C.-F.; Fraternali, F.

10.1101/512764 — bioinformatics — Posted on 2019-11-10

2457 Characterizing the allele- and haplotype-specific copy number landscape of cancer genomes at single-cell resolution with CHISEL

Zaccaria, S.; Raphael, B. J.

10.1101/837195 — genomics — Posted on 2019-11-10

2458 Hierarchically-structured metalloprotein composite coatings biofabricated from co-existing condensed liquid phases

Jehle, F.; Macias-Sanchez, E.; Fratzl, P.; Bertinetti, L.; Harrington, M.

10.1101/837146 — biophysics — Posted on 2019-11-10

2459 B Cell Receptor-Responsive miR-141 and viral miR-BART9 promote Epstein-Barr Virus Reactivation Through FOXO3 Inhibition

Chen, Y.; Fachko, D. L.; Ivanov, N. S.; Skalsky, R. L.

10.1101/837294 — molecular biology — Posted on 2019-11-10

2460 Modulation of promoter occupancy dictates the transcriptional response to graded BMP signalling levels in the Drosophila embryo

Hoppe, C.; Bowles, J.; Minchington, T. G.; Sutcliffe, C.; Upadhyai, P.; Rattray, M.; Ashe, H. L.

10.1101/837179 — developmental biology — Posted on 2019-11-10

2461 genuMet: distinguish genuine untargeted metabolic features without quality control samples

Cao, L.; Clish, C.; Hu, F. B.; Martinez-Gonzalez,, M. A.; Bullo-Bonet, M.; Corella, D.; Gomez-Gracia, E.; Fiol, M.; Estruch, R.; Lapetra, J.; Fito, M.; Aros, F.; Serra-Majem, L.; Ros, E.; Liang, L.

10.1101/837260 — bioinformatics — Posted on 2019-11-10

2462 The in situ structure of Parkinson’s disease-linked LRRK2

Watanabe, R.; Buschauer, R.; Boehning, J.; Audagnotto, M.; Lasker, K.; Lu, T. W.; Boassa, D.; Taylor, S.; Villa, E.

10.1101/837203 — biophysics — Posted on 2019-11-10

2463 Genome-scale reconstructions of the mammalian secretory pathway predict metabolic costs and limitations of protein secretion

Gutierrez, J. M.; Feizi, A.; Li, S.; Kallehauge, T. B.; Hefzi, H.; Grav, L. M.; Ley, D.; Hizal, D. B.; Betenbaugh, M. J.; Voldborg, B.; Kildegaard, H. F.; Lee, G. M.; Palsson, B. O.; Nielsen, J.; Lewis, N.

10.1101/351387 — systems biology — Posted on 2019-11-10

2464 Structure of the cell-binding component of the Clostridium difficile binary toxin reveals a novel macromolecular assembly

Xu, X.; Ruiz, R.; Adipietro, K. A.; Peralta, C.; Ben-Hail, D.; Varney, K. M.; Cook, M. E.; Roth, B. M.; Wilder, P. T.; Cleveland, T.; Grishaev, A.; Neu, H.; Michel, S.; Yu, W.; Beckett, D.; Rustandi, R. R.; Lancaster, C.; Loughney, J. W.; Krsitopeit, A.; Christanti, S.; Olson, J. W.; MacKerell, A. D.; des Georges, A.; Pozharski, E.; Weber, D. J.

10.1101/833699 — biophysics — Posted on 2019-11-10

2465 SpaCell: integrating tissue morphology and spatial gene expression to predict disease cells

Tan, X.; Su, A.; Tran, M.; Nguyen, Q.

10.1101/837211 — bioinformatics — Posted on 2019-11-10

2466 Sparse epistatic patterns in the evolution of terpene synthases

Ballal, A.; Laurendon, C.; Salmon, M.; Vardakou, M.; Cheema, J.; O'Maille, P. E.; Morozov, A. V.

10.1101/822544 — evolutionary biology — Posted on 2019-11-10

2467 Genetic screening for single-cell variability modulators driving therapy resistance

Torre, E. A.; Arai, E.; Bayatpour, S.; Beck, L. E.; Emert, B. L.; Shaffer, S. M.; Mellis, I. A.; Fane, M.; Alicea, G.; Budinich, K. A.; Weeraratna, A.; Shi, J.; Raj, A.

10.1101/638809 — cell biology — Posted on 2019-11-10

2468 Biotransformation of D-xylose to D-xylonic acid coupled to medium chain length polyhydroxyalkanoate production in cellobiose-grown Pseudomonas putida EM42.

Dvorak, P.; Kovac, J.; de Lorenzo, V.

10.1101/702662 — bioengineering — Posted on 2019-11-10

2469 Single-Cell Transcriptomic Evidence for Dense Intracortical Neuropeptide Networks

Smith, S. J.; Sumbul, U.; Graybuck, L. T.; Collman, F.; Seshamani, S.; Gala, R.; Gliko, O.; Elabbady, L.; Miller, J.; Bakken, T.; Rossier, J.; Yao, Z.; Lein, E.; Zeng, H.; Tasic, B.; Hawrylycz, M.

10.1101/519694 — neuroscience — Posted on 2019-11-10

2470 The temporal dynamics of background selection in non-equilibrium populations

Torres, R.; Stetter, M. G.; Hernandez, R.; Ross-Ibarra, J.

10.1101/618389 — evolutionary biology — Posted on 2019-11-10

2471 Amyloidogenic Proteins Drive Hepatic Proteostasis Remodeling in an Induced Pluripotent Stem Cell Model of Systemic Amyloid Disease

Giadone, R. M.; Liberti, D. C.; Matte, T. M.; Rosarda, J. D.; Torres-Arancivia, C.; Ghosh, S.; Diedrich, J. K.; Pankow, S.; Skvir, N.; Jean, J.-C.; Yates, J. R.; Wilson, A. A.; Connors, L. H.; Kotton, D. N.; Wiseman, R. L.; Murphy, G. J.

10.1101/358515 — cell biology — Posted on 2019-11-10

2472 FastMulRFS: Statistically consistent polynomial time species tree estimation under gene duplication

Molloy, E. K.; Warnow, T.

10.1101/835553 — evolutionary biology — Posted on 2019-11-10

2473 Self-sustained Planar Intercalations due to Mechanosignaling Feedbacks Lead to Robust Axis Extension during Morphogenesis

Anbari, S.; Buceta, J.

10.1101/837450 — systems biology — Posted on 2019-11-10

2474 TAXyl: An in-silico method for predicting the thermal activity for xylanases from GH10 and GH11 families

Foroozandeh Shahraki, M.; Farhadyar, K.; Kavousi, K.; Azarabad, M. H.; Boroomand, A.; Ariaeenejad, S.; Hosseini Salekdeh, G.

10.1101/826040 — bioinformatics — Posted on 2019-11-10

2475 Mutation severity spectrum of rare alleles in the human genome is predictive of disease type

Pei, J.; Kinch, L. N.; Grishin, N. V.

10.1101/835462 — bioinformatics — Posted on 2019-11-10

2476 Comparative analysis of chemically and biologically synthesized iron oxide nanoparticles against Leishmania tropica

ul Ain, Q. A.; Islam, A.; Nadhman, A.

10.1101/829408 — plant biology — Posted on 2019-11-10

2477 An Interpretable Performance Metric for Auditory Attention Decoding Algorithms in a Context of Neuro-Steered Gain Control

Geirnaert, S.; Francart, T.; Bertrand, A.

10.1101/745695 — neuroscience — Posted on 2019-11-10

2478 Paternal aging causes atypical development of vocal communication in neonatal mice

Mai, L.; Kimura, R.; Inada, H.; Kanno, K.; Matsuda, T.; Tachibana, R. O.; Yoshizaki, K.; Komaki, F.; Osumi, N.

10.1101/738781 — neuroscience — Posted on 2019-11-10

2479 Does rehearsal benefit visual memory? The role of semantic associations in the maintenance of intact and phase scrambled scenes.

Reichert Plaska, C.; Arango, A. M.; Ng, K.; Ellmore, T. M.

10.1101/753350 — neuroscience — Posted on 2019-11-10

2480 Antiretroviral APOBEC3 Cytidine Deaminases Alter HIV-1 Provirus Integration Site Profiles

Ajoge, H. O.; Renner, T. M.; Belanger, K.; Kohio, H. P.; Coleman, M. D.; Langlois, M.-A.; Barr, S. D.

10.1101/833475 — microbiology — Posted on 2019-11-10

2481 Genomic characterization of the non-O1/non-O139 Vibrio cholerae strain that caused a gastroenteritis outbreak in Santiago, Chile, 2018

Arteaga, M.; Velasco, J.; Rodriguez, S.; Vidal, M.; Arellano, C.; Silva, F.; Carreno, L. J.; Vidal, R. M.; Montero, D. A.

10.1101/835090 — microbiology — Posted on 2019-11-10

2482 On species delimitation, hybridization and population structure of cassava whitefly in Africa

Elfekih, S.; Tay, W.; Polaszek, A.; Gordon, K.; Kunz, D.; Macfadyen, S.; Walsh, T.; Vyskocilov, S.; Colvin, J.; De Barro, P.

10.1101/836072 — genomics — Posted on 2019-11-10

2483 A portable and cost-effective microfluidic system for massively parallel single-cell transcriptome profiling

10.1101/818450 — genomics — Posted on 2019-11-10

2484 Immune-mediated genetic pathways resulting in pulmonary function impairment increase lung cancer susceptibility

10.1101/635318 — genetics — Posted on 2019-11-10

2485 Genetic paths to evolutionary rescue and the distribution of fitness effects along them

Osmond, M. M.; Otto, S. P.; Martin, G.

10.1101/696260 — evolutionary biology — Posted on 2019-11-10

2486 A TBX5 dosage-sensitive gene regulatory network for human congenital heart disease

Kathiriya, I. S.; Rao, K. S.; Iacono, G.; Devine, W. P.; Hota, S. K.; Lai, M. H.; Garay, B. I.; Thomas, R.; Blair, A. P.; Gong, H. Z.; Wasson, L. K.; Goyal, P.; Sukonnik, T.; Akgun, G. A.; Bernard, L. D.; Akerberg, B. N.; Gu, F.; Li, K.; Pu, W. T.; Stuart, J. M.; Seidman, C. E.; Seidman, J. G.; Heyn, H.; Bruneau, B. G.

10.1101/835603 — developmental biology — Posted on 2019-11-10

2487 Evaluation of six phase encoding based susceptibility distortion correction methods for diffusion MRI

Gu, X.; Eklund, A.

10.1101/766139 — neuroscience — Posted on 2019-11-10

2488 Selective targeting of an oncogenic KRAS mutant allele by CRISPR/Cas9 induces efficient tumor regression

Gao, Q.; Ouyang, W.; Kang, B.; Han, X.; Xiong, Y.; Ding, R.; Li, Y.; Wang, F.; Huang, L.; Chen, L.; Wang, D.; DONG, X.; Zhang, Z.; Li, Y.; Ze, B.; HOU, Y.; Yang, H.; Ma, Y.; Gu, Y.; Chao, C.-C.

10.1101/807578 — genetics — Posted on 2019-11-10

2489 Historical abundance and distributions of Salpa thompsoni hot spots in the Southern Ocean, with projections for further ocean warming

Słomska, A. W.; Panasiuk, A.; Weydmann, A.; Wawrzynek, J.; Konik, M.; Siegel, V.

10.1101/496257 — animal behavior and cognition — Posted on 2019-11-10

2490 Prostaglandin D2 Signaling is Not Involved in the Recovery of Rat Hindlimb Tendons from Injury

Sarver, D. C.; Sugg, K. B.; Talarek, J. R.; Swanson, J. B.; Oliver, D. J.; Hinken, A. C.; Kramer, H. F.; Mendias, C. L.

10.1101/778126 — physiology — Posted on 2019-11-10

2491 On the cross-population generalizability of gene expression prediction models

Keys, K. L.; Mak, A. C. Y.; White, M. J.; Eckalbar, W.; Dahl, A. W.; Mefford, J.; Mikhaylova, A. V.; Contreras, M. G.; Elhawary, J. R.; Eng, C.; Hu, D.; Huntsman, S.; Oh, S. S.; Salazar, S.; Lenoir, M. A.; Ye, C. J.; Thornton, T. A.; Zaitlen, N.; Burchard, E. G.; Gignoux, C. R.

10.1101/552042 — genomics — Posted on 2019-11-10

2492 A Systems Approach Identifies Enhancer of Zeste Homolog 2 (EZH2) as a Protective Factor in Epilepsy

Khan, N.; Schoenike, B.; Grabenstatter, H.; Basu, T.; Rodriguez, G.; Sindic, C.; Johnson, M.; Wallace, E.; Maganti, R.; Dingledine, R.; Roopra, A.

10.1101/836387 — neuroscience — Posted on 2019-11-09

2493 A unique conformational escape reaction of HIV-1 against an allosteric integrase inhibitor

Nakamura, T.; Nakamura, T.; Amano, M.; Miyakawa, T.; Yamagata, Y.; Matsuoka, M.; Nakata, H.

10.1101/836718 — microbiology — Posted on 2019-11-09

2494 Selection of HIV-1 for Resistance to Fourth Generation Protease Inhibitors Reveals Two Independent Pathways to High-Level Resistance

Spielvogel, E.; Lee, S.-K.; Zhou, S.; Lockbaum, G. J.; Henes, M.; Sondgeroth, A.; Kosovrasti, K.; Ali, A.; Yilmaz, N. K.; Schiffer, C. A.; Swanstrom, R.

10.1101/837120 — microbiology — Posted on 2019-11-09

2495 Dynamic Genome Evolution and Blueprint of Complex Virocell Metabolism in Globally-Distributed Giant Viruses

Moniruzzaman, M.; Martinez-Gutierrez, C. A.; Weinheimer, A. R.; Aylward, F.

10.1101/836445 — microbiology — Posted on 2019-11-09

2496 Impact of admixture and ancestry on eQTL analysis and GWAS colocalization in GTEx

Gay, N. R.; Gloudemans, M.; Antonio, M. L. L.; Balliu, B.; Park, Y.; Martin, A. R.; Musharoff, S.; Rao, A.; Aguet, F.; Barbeira, A.; Bonazzola, R.; Hormozdiari, F.; GTEx Consortium, ; Ardlie, K. G.; Brown, C. D.; Im, H. K.; Lappalainen, T.; Wen, X.; Montgomery, S. B.

10.1101/836825 — genetics — Posted on 2019-11-09

2497 Prominent members of the human gut microbiota express endo-acting O-glycanases to initiate mucin breakdown

Crouch, L. I.; Bolam, D. N.; Basle, A.; Stewart, C. J.; Wuhrer, M.; Linhardt, R. J.; Liberato, M. V.; Lamb, C. A.; Zhang, F.; Cooke, K.; Doona, M.; Needham, S.; Brady, R. R.; Berrington, J. E.; Madunic, K.; Chater, P.; Pearson, J. P.; Urbanowicz, P. A.; Spencer, D. I.; Martens, E. J.; Glowacki, R.

10.1101/835843 — biochemistry — Posted on 2019-11-09

2498 MAT drives the variation in maximum potential species richness and frost organizes the residual variation

Segovia, R. A.

10.1101/836338 — ecology — Posted on 2019-11-09

2499 Crosslinking of nucleotide binding domains improves the coupling efficiency of an ABC transporter

Fan, C.; Kaiser, J. T.; Rees, D. C.

10.1101/836676 — biochemistry — Posted on 2019-11-09

2500 An assessment of environmental metabarcoding protocols aiming at favouring contemporary biodiversity in inventories of deep-sea communities

Brandt, M. I.; Trouche, B.; Henry, N.; Haag-Liautard, C.; De Vargas, C.; Maignien, L.; Wincker, P.; Poulain, J.; Zeppilli, D.; Arnaud-Haond, S.

10.1101/836080 — genomics — Posted on 2019-11-09

2501 Structural insights into interaction mechanisms of alternative piperazine-urea YEATS domain binders in MLLT1

Ni, X.; Heidenreich, D.; Christott, T.; Bennett, J.; Moustakim, M.; Brennan, P.; Fedorov, O.; Knapp, S.; Chaikuad, A.

10.1101/836932 — biochemistry — Posted on 2019-11-09

2502 Horizontal gene transfer drives the evolution of dependencies in bacteria

Goyal, A.

10.1101/836403 — microbiology — Posted on 2019-11-09

2503 Mass spectrometry based immunopeptidomics leads to robust predictions of phosphorylated HLA class I ligands

Solleder, M.; Guillaume, P.; Racle, J.; Michaux, J.; Pak, H.-S.; Muller, M.; Coukos, G.; Bassani-Sternberg, M.; Gfeller, D.

10.1101/836189 — immunology — Posted on 2019-11-09

2504 MOFA+: a probabilistic framework for comprehensive integration of structured single-cell data

Argelaguet, R.; Arnol, D.; Bredikhin, D.; Deloro, Y.; Velten, B.; Marioni, J. C.; Stegle, O.

10.1101/837104 — bioinformatics — Posted on 2019-11-09

2505 Balancing control: a Bayesian interpretation of habitual and goal-directed behavior

Schwöbel, S.; Markovic, D.; Smolka, M. N.; Kiebel, S. J.

10.1101/836106 — neuroscience — Posted on 2019-11-09

2506 Isolation and molecular identification of pectinase producing Aspergillus species from different soil samples of Bhubaneswar regions

Satpathy, S.; Behera, P. M.; Tanty, D. K.; Srivastava, S.; Thatoi, H.; Sahoo, S. L.

10.1101/837112 — microbiology — Posted on 2019-11-09

2507 Sex-specific genetic effects across biomarkers

Flynn, E.; Tanigawa, Y.; Rodriguez, F.; Altman, R. B.; Sinnott-Armstrong, N.; Rivas, M. A.

10.1101/837021 — genetics — Posted on 2019-11-09

2508 Aurora B-dependent Ndc80 Degradation Regulates Kinetochore Composition in Meiosis

Chen, J.; Liao, A.; Powers, E. N.; Liao, H.; Kohlstaedt, L. A.; Evans, R.; Holly, R. M.; Kim Kim, J.; Jovanovic, M.; Unal, E.

10.1101/836668 — genetics — Posted on 2019-11-09

2509 Spotlight on the monitoring of the invasion of a carabid beetle on an oceanic island over a 100 year period

Lebouvier, M.; Lambret, P.; Garnier, A.; Frenot, Y.; Vernon, P.; Renault, D.

10.1101/837005 — ecology — Posted on 2019-11-09

2510 Beyond Conventional Models: Recreating the Initiation, Evolution, and Genome of GBM

Bohm, A.; DePetro, J.; Binding, C.; Gerber, A.; Chahley, N.; Ware, M.; Thomas, K.; Bukhari, S.; Chen, C.; Chahley, E.; Grisdale, C.; Berger, N. D.; Lawn, S.; Yu, Y.; Wong, R.; Shen, Y.; Omairi, H.; Mirzaei, R.; Maxwell, L.; Pedersen, H.; Yong, V. W.; Weiss, S.; Chan, J. A.; Cimino, P. J.; Kelly, J.; Jones, S. J. M.; Holland, E.; Blough, M. D.; Cairncross, G.

10.1101/837138 — cancer biology — Posted on 2019-11-09

2511 GNMFLMI: Graph Regularized Nonnegative Matrix Factorization for Predicting LncRNA-MiRNA Interactions

wang, m.; You, Z.-H.; li, l.; wong, L.; chen, z.; gan, c.

10.1101/835934 — bioinformatics — Posted on 2019-11-09

2512 PPanGGOLiN: Depicting microbial diversity via a Partitioned Pangenome Graph

Gautreau, G.; Bazin, A.; Gachet, M.; Planel, R.; Burlot, L.; Dubois, M.; Perrin, A.; Medigue, C.; Calteau, A.; Cruveiller, S.; Matias, C.; Ambroise, C.; Rocha, E. P. C.; Vallenet, D.

10.1101/836239 — bioinformatics — Posted on 2019-11-09

2513 Spatial and temporal patterns of nitric oxide diffusion and degradation drive emergent cerebrovascular dynamics

Haselden, W. D.; Kedarasetti, R. T.; Drew, P. J.

10.1101/836148 — neuroscience — Posted on 2019-11-09

2514 Poisson balanced spiking networks

Rullan Buxo, C. E.; Pillow, J. W.

10.1101/836601 — neuroscience — Posted on 2019-11-09

2515 Patient-specific functional genomics and disease modeling suggest a role for LRP2 in Hypoplastic Left Heart Syndrome

Li, X.; Martinez-Fernandez, A.; Missinato, M. A.; Theis, J. L.; Vogler, G.; Nielsen, T.; Walls, S. M.; Birker, K.; Evans, J. M.; O'Byrne, M. M.; Fogarty, Z. C.; Ocorr, K.; Terzic, A.; Bodmer, R.; Colas, A. R.; Nelson, T. J.; Olson, T. M.

10.1101/835439 — genetics — Posted on 2019-11-09

2516 Excavating New Facts from Ancient Hepatitis B Virus Sequences

Datta, S.

10.1101/829473 — evolutionary biology — Posted on 2019-11-09

2517 The evolution of multicellular complexity: the role of relatedness and environmental constraints

Fisher, R. M.; Shik, J. Z.; Boomsma, J. J.

10.1101/836940 — evolutionary biology — Posted on 2019-11-09

2518 Geometry and evolution of the ecological niche in plant-associated microbes

Chaloner, T. M.; Gurr, S. J.; Bebber, D. P.

10.1101/836411 — ecology — Posted on 2019-11-09

2519 MicrobioLink: An integrated computational pipeline to infer functional effects of microbiome-host interactions

Andrighetti, T.; Gul, L.; Korcsmaros, T.; Sudhakar, P.

10.1101/837062 — bioinformatics — Posted on 2019-11-09

2520 A Simplest Bioinformatics Pipeline for Whole Transcriptome Sequencing: Overview of the Processing and Steps from Raw Data to Downstream Analysis.

Gupta, A.; Gupta, S.; Jatawa, S. K.; Mishra, A. K.; Suravajhala, P.

10.1101/836973 — bioinformatics — Posted on 2019-11-09

2521 SNPector: SNP inspecting tool to detect disease existence and drug response in direct naked sequencing depends on mutation index

Habib, P.; Al Samman, A. S.; Hamwieh, A.

10.1101/834580 — bioinformatics — Posted on 2019-11-09

2522 The Manifold Actions of Signaling Peptides on Subcellular Dynamics of a Receptor Specify Stomatal Cell Fate

Qi, X.; Maes, M.; Zeng, S.; Torii, K. U.

10.1101/836437 — plant biology — Posted on 2019-11-09

2523 Inhibiting the prostaglandin transporter PGT induces non-canonical thermogenesis at thermoneutrality

Pai, V. J.; Lu, R.; Wu, L.; Garcia-Macia, M.; Koba, W. R.; Chi, Y.; Singh, R.; Schwartz, G. J.; Schuster, V. L.

10.1101/836288 — physiology — Posted on 2019-11-09

2524 The effects of age on resting-state BOLD signal variability is explained by cardiovascular and neurovascular factors

Tsvetanov, K. A.; Henson, R. N.; Jones, P. S.; Mutsaerts, H.-J.; Fuhrmann, D.; Tyler, L. K.; Cambridge Centre for Ageing and Neuroscience, Cam-CAN, ; Rowe, J. B.

10.1101/836619 — neuroscience — Posted on 2019-11-09

2525 Brain Antibody Sequence Evaluation (BASE): an easy-to-use software for complete data analysis in single cell immunoglobulin cloning

Reincke, S. M.; Prüss, H.; Kreye, J.

10.1101/836999 — neuroscience — Posted on 2019-11-09

2526 Removal of high frequency contamination from motion estimates in single-band fMRI saves data without biasing functional connectivity

Gratton, C.; Coalson, R. S.; Dworetsky, A.; Adeyemo, B.; Laumann, T. O.; Wig, G. S.; Kong, T. S.; Gratton, G.; Fabiani, M.; Barch, D. M.; Tranel, D.; Miranda-Dominguez, O.; Fair, D. A.; Dosenbach, N. U. F.; Snyder, A. Z.; Perlmutter, J. S.; Petersen, S. E.; Campbell, M. C.

10.1101/837161 — neuroscience — Posted on 2019-11-09

2527 A novel dynamic network imaging analysis method reveals aging-related fragmentation of cortical networks in mouse

Llano, D. A.; Ma, C.; Di Fabrizio, U.; Taheri, A.; Stebbings, K. A.; Yudintsev, G.; Xiao, G.; Kenyon, R. V.; Berger-Wolf, T.

10.1101/836817 — neuroscience — Posted on 2019-11-09

2528 VelA and LaeA are key regulators of the Epichloë festucae transcriptomic response during symbiosis with perennial ryegrass

Rahnama, M.; Maclean, P.; Fleetwood, D.; Johnson, R.

10.1101/835249 — molecular biology — Posted on 2019-11-09

2529 Nascent RNA sequencing of peripheral blood leukocytes reveal gene expression diversity

Kim, S. S.-Y.; Dziubek, A.; Lee, S. A.; Kwak, H.

10.1101/836841 — molecular biology — Posted on 2019-11-09

2530 Interaction of two strongly divergent archaellins stabilizes the structure of the Halorubrum archaellum

Pyatibratov, M. G.; Syutkin, A. S.; Quax, T. E. F.; Melnik, T. N.; Papke, R. T.; Gogarten, J. P.; Kireev, I. I.; Surin, A. K.; Beznosov, S. N.; Galeva, A. V.; Fedorov, O. V.

10.1101/836379 — microbiology — Posted on 2019-11-09

2531 ISOLATION AND SCREENING OF HEAVY METAL RESISTANT AMMONIA OXIDIZING BACTERIA FROM SOIL AND WASTE DUMP: A POTENTIAL CANDIDATES FOR BIOREMEDIATION OF HEAVY METALS

Nyoyoko, V. f.; Anyanwu, C. U.

10.1101/836890 — microbiology — Posted on 2019-11-09

2532 Novel patterns of complex structural variation revealed across thousands of cancer genome graphs

Hadi, K.; Yao, X.; Behr, J. M.; Deshpande, A.; Xanthopoulakis, C.; Rosiene, J.; Darmofal, M.; Tian, H.; DeRose, J.; Mortensen, R.; Adney, E.; Gajic, Z.; Eng, K.; Wala, J. A.; Wrzeszczynski, K. O.; Arora, K.; Shah, M.; Emde, A.-K.; Felice, V.; Frank, M. O.; Darnell, R.; Ghandi, M.; Huang, F.; Maciejowski, J.; De Lange, T.; Setton, J.; Riaz, N.; Reis-Filho, J. S.; Powell, S.; Knowles, D.; Reznik, E.; Mishra, B.; Beroukhim, R.; Zody, M.; Robine, N.; Oman, K.; Sanchez, C. A.; Kuhner, M. K.; Smith, L. P.; Galipeau, P. C.; Paulson, T. G.; Reid, B. J.; Li, X.; Wilkes, D.; Sboner, A.; Mosquera, J. M.;

10.1101/836296 — genomics — Posted on 2019-11-09

2533 Six new reference-quality bat genomes illuminate the molecular basis and evolution of bat adaptations

Jebb, D.; Huang, Z.; Pippel, M.; Hughes, G. M.; Lavrichenko, K.; Devanna, P.; Winkler, S.; Jermiin, L. S.; Skirmuntt, E. C.; Katzourakis, A.; Burkitt-Gray, L.; Ray, D. A.; Sullivan, K. A.; Roscito, J. G.; Kirilenko, B. M.; Davalos, L. M.; Corthals, A. P.; Power, M.; Jones, G.; Ransome, R. D.; Dechmann, D.; Locatelli, A. G.; Puechmaille, S. J.; Fedrigo, O.; Jarvis, E. D.; Springer, M. S.; Hiller, M.; Vernes, S. C.; Myers, E. W.; Teeling, E. C.

10.1101/836874 — genomics — Posted on 2019-11-09

2534 The efficacy of obesity polygenic risk scores in an autistic population

Zhang, D. Y.; Palmer, N. P.; Hong, C.; Zhang, L.; Finlayson, S. G.; Avillach, P.; Kohane, I. S.

10.1101/836734 — genetics — Posted on 2019-11-09

2535 Key ecological parameters of immotile versus locomotive life

Gorshkov, V. G.; Makarieva, A. M.

10.1101/836882 — ecology — Posted on 2019-11-09

2536 A Priori Activation of Apoptosis Pathways of Tumor (AAAPT) Technology: Development of Targeted Apoptosis Initiators for Cancer Treatment.

Pandurangi, R. S.; Paulmurugan, R.; Tomasetti, M.; Sekar, T.; Ma, C.; Rajput, S.; Nakshatri, H.; Anjanappa, M.

10.1101/830521 — cancer biology — Posted on 2019-11-09

2537 Marker-Trait Complete Analysis

Zhou, Y.-H.; Gallins, P.; Wright, F.

10.1101/836494 — bioinformatics — Posted on 2019-11-09

2538 Population genetic models of GERP scores suggest pervasive turnover of constrained sites across mammalian evolution

Huber, C. D.; Kim, B. Y.; Lohmueller, K. E.

10.1101/836858 — genetics — Posted on 2019-11-09

2539 Parameter tuning facilitates the evolution of diverse tunneling patterns in termites

Mizumoto, N.; Bardunias, P. M.; Pratt, S. C.

10.1101/836346 — animal behavior and cognition — Posted on 2019-11-09

2540 Dynamic DNA-based information storage

Lin, K.; Tuck, J. M.; Keung, A. J.

10.1101/836429 — synthetic biology — Posted on 2019-11-09

2541 Ultradian regulation of rest and activity bouts in mice

Ananthasubramaniam, B.; Meijer, J. H.

10.1101/836478 — physiology — Posted on 2019-11-09

2542 A generalizable multivariate brain pattern for interpersonal guilt

Yu, H.; Koban, L.; Chang, L. J.; Wagner, U.; Krishnan, A.; Vuilleumier, P.; Zhou, X.; Wager, T.

10.1101/835520 — neuroscience — Posted on 2019-11-09

2543 CenH3-independent kinetochore assembly in Lepidoptera requires CENP-T

Cortes-Silva, N.; Ulmer, J.; Kiuchi, T.; Hsieh, E.; Cornilleau, G.; Ladid, I.; Dingli, F.; Loew, D.; Katsuma, S.; Drinnenberg, I. A.

10.1101/836262 — molecular biology — Posted on 2019-11-09

2544 Complete genome assembly of the Wolbachia endosymbiont of the horn fly Haematobia irritans irritans: a supergroup A strain with multiple horizontally acquired cytoplasmic incompatibility genes

Madhav, M.; Parry, R.; Torgan, J. A.; James, P.; Asgari, S.

10.1101/836908 — microbiology — Posted on 2019-11-09

2545 Nightmares share strong genetic risk with sleep and psychiatric disorders

Ollila, H. M.; Sinnott-Armstrong, N.; Kantojarvi, K.; Palviainen, T.; Pandit, A.; Rong, R.; Kristiansson, K.; Sandman, N.; Valli, K.; Hublin, C.; Kaprio, J.; Saxena, R.; Paunio, T.

10.1101/836452 — genetics — Posted on 2019-11-09

2546 Meta-analysis of Scandinavian Schizophrenia Exomes

10.1101/836957 — genetics — Posted on 2019-11-09

2547 Germline and somatic genetic variants in the p53 pathway interact to affect cancer risk, progression and drug response

Zhang, P.; Kitchen-Smith, I.; Xiong, L.; Stracquadanio, G.; Brown, K.; Richter, P.; Wallace, M.; Bond, E.; Sahgal, N.; Moore, S.; Nornes, S.; De Val, S.; Surakhy, M.; Sims, D.; Wang, X.; Bell, D. A.; Zeron-Medina, J.; Jiang, Y.; Ryan, A.; Selfe, J.; Shipley, J.; Kar, S.; Pharoah, P.; Loveday, C.; Jansen, R.; Grochola, L. F.; Palles, C.; Protheroe, A.; Millar, V.; Ebner, D.; Pagadala, M.; Blagden, S. P.; Maughan, T.; Domingo, E.; Tomlinson, I.; Turnbull, C.; Carter, H.; Bond, G.

10.1101/835918 — cancer biology — Posted on 2019-11-09

2548 Correcting reference bias from the Illumina Isaac aligner enables analysis of cancer genomes

Cornish, A. J.; Chubb, D.; Frangou, A.; Hoang, P. H.; Kaiser, M.; Wedge, D. C.; Houlston, R. S.

10.1101/836171 — bioinformatics — Posted on 2019-11-09

2549 Physiological and molecular responses of a newly evolved auxotroph of Chlamydomonas to B12 deprivation

Bunbury, F.; Helliwell, K. E.; Mehrshahi, P.; Davey, M. P.; Salmon, D. L.; Holzer, A.; Smirnoff, N.; Smith, A. G.

10.1101/836635 — biochemistry — Posted on 2019-11-09

2550 Unravelling the genetic architecture of musical rhythm

Niarchou, M.; Sathirapongsasuti, J. F.; Jacoby, N.; Bell, E.; McArthur, E.; Straub, P.; The 23andMe Research Team, ; McAuley, J. D.; Capra, J. A.; Ullen, F.; Creanza, N.; Mosing, M. A.; Hinds, D.; Davis, L. K.; Gordon, R. L.

10.1101/836197 — genetics — Posted on 2019-11-09

2551 WAVE complex self-organization templates lamellipodial formation

Pipathsouk, A.; Brunetti, R. M.; Town, J. P.; Breuer, A.; Pellett, P. A.; Marchuk, K.; Tran, N.-H. T.; Krummel, M. F.; Stamou, D.; Weiner, O. D.

10.1101/836585 — cell biology — Posted on 2019-11-09

2552 Heme synthesis inhibition blocks angiogenesis via mitochondrial dysfunction

Shetty, T.; Sishtla, K.; Park, B.; Repass, M. J.; Corson, T. W.

10.1101/836304 — cell biology — Posted on 2019-11-09

2553 Combined model-free and model-sensitive reinforcement learning in non-human primates

Miranda, B.; Malalasekera, W. M. N.; Behrens, T. E. J.; Dayan, P.; Kennerley, S.

10.1101/836007 — neuroscience — Posted on 2019-11-09

2554 Application of Optogenetic Amyloid-β Distinguishes Between Metabolic and Physical Damage in Neurodegeneration

Lim, C. H.; Kaur, P.; Teo, E.; Lam, V. Y. M.; Zhu, F.; Kibat, C.; Mathuru, A. S.; Gruber, J.; Tolwinski, N. S.

10.1101/836593 — developmental biology — Posted on 2019-11-09

2555 Mass spectrometry analysis of mouse hematopoietic stem cells and their progenitors reveals differential expression within and between proteome and transcriptome throughout adult and aged hematopoiesis

Zaro, B. W.; Noh, J. J.; Mascetti, V. L.; Demeter, J.; George, B. M.; Zukowska, M.; Gulati, G. S.; Sinha, R.; Morganti, R. M.; Banuelos, A.; Zhang, A.; Jackson, P. K.; Weissman, I. L.

10.1101/836692 — cell biology — Posted on 2019-11-09

2556 Seeing around corners: Cells create chemotactic gradients to solve mazes and respond to distant cues in complex environments.

Tweedy, L.; Thomason, P.; Martin, K. J.; Zagnoni, M.; Machesky, L. M.; Insall, R. H.

10.1101/836056 — cell biology — Posted on 2019-11-09

2557 PCA-based source-space contrast maps reveal psychologically meaningful individual differences in continuous MEG activity

Heinila, E.; Hyvarinen, A.; Ristaniemi, T.; Parkkonen, L.; Parviainen, T.

10.1101/835884 — neuroscience — Posted on 2019-11-09

2558 On species delimitation, hybridization and population structure of cassava whitefly in Africa

Elfekih, S.; Tay, W.; Polaszek, A.; Gordon, K.; Kunz, D.; Macfadyen, S.; Walsh, T.; Vyskocilov, S.; Colvin, J.; De Barro, P.

10.1101/836072 — ecology — Posted on 2019-11-09

2559 Functional characterisation of gut microbiota and metabolism in Type 2 diabetes indicates that Clostridiales and Enterococcus could play a key role in the disease

Mora-Ortiz, M.; Oregioni, A.; Claus, S. P.

10.1101/836114 — microbiology — Posted on 2019-11-09

2560 Unblended Disjoint Tree Merging using GTM improves species tree estimation

Smirnov, V.; Warnow, T.

10.1101/835959 — evolutionary biology — Posted on 2019-11-09

2561 Human HMGN1 and HMGN2 are not required for transcription-coupled DNA repair

Apelt, K.; Zoutendijk, I.; Gout, D. Y.; van den Heuvel, D.; Luijsterburg, M. S.

10.1101/835868 — cell biology — Posted on 2019-11-09

2562 Machine learning reveals adaptive maternal responses to infant distress calls in wild chimpanzees

Dezecache, G.; Zuberbühler, K.; Davila-Ross, M.; Dahl, C. D.

10.1101/835827 — animal behavior and cognition — Posted on 2019-11-09

2563 Exploring High-Dimensional Biological Data with Sparse Contrastive Principal Component Analysis

Boileau, P.; Hejazi, N. S.; Dudoit, S.

10.1101/836650 — genomics — Posted on 2019-11-09

2564 Genome-wide association study for maize leaf cuticular conductance identifies candidate genes involved in the regulation of cuticle development

Gore, M. A.; Smith, L. G.; Lin, M.; Matschi, S.; Vasquez, M.; Chamness, J.; Kaczmar, N.; Baseggio, M.; Miller, M.; Stewart, E.; Qiao, P.; Scanlon, M. J.; Molina, I.

10.1101/835892 — genetics — Posted on 2019-11-09

2565 Stochastic analysis of optimal production of infectious progeny in Chlamydia

Enciso, G. A.; Tan, M.; Wan, F. Y.

10.1101/836353 — cell biology — Posted on 2019-11-09

2566 Genome-wide association study identifies 49 common genetic variants associated with handedness.

10.1101/831321 — genetics — Posted on 2019-11-09

2567 Imputation of single-cell gene expression with an autoencoder neural network

Badsha, M. B.; Li, R.; Liu, B.; Li, Y. I.; Xian, M.; Banovich, N. E.; Fu, A. Q.

10.1101/504977 — bioinformatics — Posted on 2019-11-09

2568 A new method for rapid genome classification, clustering, visualization, and novel taxa discovery from metagenome

Wang, Z.; Ho, H.; Egan, R.; Yao, S.; Kang, D.; Froula, J.; Sevim, V.; Schulz, F.; Shay, J. E.; Macklin, D.; McCue, K.; Orsini, R.; Barich, D. J.; Sedlacek, C. J.; Li, W.; Morgan-Kiss, R.; Woyke, T.; Slonczewski, J. L.

10.1101/812917 — bioinformatics — Posted on 2019-11-09

2569 Aversion of the invasive Asian longhorned tick to the white-footed mouse, the dominant reservoir of tick-borne pathogens in the United States

Ronai, I.; Tufts, D. M.; Diuk-Wasser, M. A.

10.1101/826289 — zoology — Posted on 2019-11-09

2570 An optimized protocol for iDISCO+ rat brain clearing, imaging, and analysis

Branch, A.; Tward, D.; Vogelstein, J. T.; Wu, Z.; Gallagher, M.

10.1101/639674 — neuroscience — Posted on 2019-11-09

2571 Neural G0: a quiescent-like state found in neuroepithelial-derivedcells and glioma

Feldman, H.; Toledo, C.; Arora, S.; Hoellerbauer, P.; Corrin, P.; Carter, L.; Kufeld, M.; Bolouri, H.; Basom, R.; Delrow, J.; Meier, J.; McFaline-Figueroa, J.; Trapnell, C.; Pollard, S.; Plaisier, C.; PADDISON, P.

10.1101/446344 — cell biology — Posted on 2019-11-09

2572 Mathematical deconvolution of CAR T-cell proliferation and exhaustion from real-time killing assay data

Sahoo, P.; Yang, X.; Abler, D.; Maestrini, D.; Adhikarla, V.; Frankhouser, D.; Cho, H.; Machuca, V.; Wang, D.; Barish, M.; Gutova, M.; Branciamore, S.; Brown, C. E.; Rockne, R. C.

10.1101/786020 — immunology — Posted on 2019-11-09

2573 Speciation and gene flow across an elevational gradient in New Guinea kingfishers

Linck, E.; Freeman, B. G.; Dumbacher, J. P.

10.1101/589044 — evolutionary biology — Posted on 2019-11-09

2574 Defining Major Depressive Disorder Cohorts Using the EHR: Multiple Phenotypes Based on ICD-9 Codes and Medication Orders

Ingram, W. M.; Baker, A. M.; Bauer, C. R.; Brown, J. P.; Goes, F. S.; Larson, S.; Zandi, P. P.

10.1101/227561 — epidemiology — Posted on 2019-11-09

2575 Individual differences in haemoglobin concentration influence BOLD fMRI functional connectivity and its correlation with cognition

Ward, P. G. D.; Orchard, E. R.; Oldham, S.; Arnatkeviciute, A.; Sforazzini, F.; Fornito, A.; Egan, G.; Jamadar, S. D.

10.1101/835660 — neuroscience — Posted on 2019-11-08

2576 Identifying Integrative Molecular Pathways for Predictive Modeling of Infectious Disease

Schaper, C.

10.1101/835546 — physiology — Posted on 2019-11-08

2577 Poly-Exposure and Poly-Genomic Scores Implicate Prominent Roles of Non-Genetic and Demographic Factors in Four Common Diseases in the UK

He, Y.; Lakhani, C. M.; Manrai, A. K.; Patel, C. J.

10.1101/833632 — bioinformatics — Posted on 2019-11-08

2578 Shared anomalies in cortical reading networks in Chinese and French dyslexic children

Feng, X.; Altarelli, I.; Monzalvo, K.; Ding, G.; Ramus, F.; Shu, H.; Dehaene, S.; Meng, X.; Dehaene-Lambertz, G.

10.1101/834945 — neuroscience — Posted on 2019-11-08

2579 Conjunctive Representations that Integrate Stimuli, Responses, and Rules are Critical for Action Selection

Kikumoto, A.; Mayr, U.

10.1101/835652 — neuroscience — Posted on 2019-11-08

2580 Toxoplasma Cathepsin Protease B and Aspartyl Protease 1 play recessive roles in endolysosomal protein digestion during infection

McDonald, C.; Smith, D.; Di Cristina, M.; Kannan, G.; Dou, Z.; Carruthers, V. B.

10.1101/835405 — microbiology — Posted on 2019-11-08

2581 Transcriptome-wide transmission disequilibrium analysis identifies novel risk genes for autism spectrum disorder

Huang, K.; Wu, Y.; Shin, J.; Zheng, Y.; Fotuhi Siahpirani, A.; Lin, Y.; Ni, Z.; Chen, J.; You, J.; Keles, S.; Wang, D.; Roy, S.; Lu, Q.

10.1101/835678 — genetics — Posted on 2019-11-08

2582 mir-71 mediates age-dependent opposing contributions of the stress activated kinase KGB-1 in Caenorhabditis elegans

Ruediger, C.; Shapira, M.

10.1101/835355 — genetics — Posted on 2019-11-08

2583 Characterisation of protein isoforms encoded by the Drosophila Glycogen Synthase Kinase 3 gene shaggy

Korona, D.; Nightingale, D. J. H.; Fabre, B.; Nelson, M.; Fischer, B.; Johnson, G.; Lees, J.; Hubbard, S.; Lilley, K.; Russell, S.

10.1101/835801 — genetics — Posted on 2019-11-08

2584 Mendelian randomisation for mediation analysis: current methods and challenges for implementation

Carter, A. R.; Sanderson, E.; Hammerton, G.; Richmond, R.; Davey Smith, G.; Heron, J.; Taylor, A.; Davies, N. M.; Howe, L. D.

10.1101/835819 — genetics — Posted on 2019-11-08

2585 Cargo licenses maturation of stalled endocytic sites through a regulatory checkpoint

Pedersen, R. T.; Hassinger, J. E.; Marchando, P.; Drubin, D. G.

10.1101/834523 — cell biology — Posted on 2019-11-08

2586 Strategies to modulate zebrafish collective dynamics with a closed-loop biomimetic robotic system

Chemtob, Y.; Cazenille, L.; Bonnet, F.; Gribovskiy, A.; Mondada, F.; Halloy, J.

10.1101/831784 — animal behavior and cognition — Posted on 2019-11-08

2587 The ocellate river stingray (Potamotrygon motoro) exploits vortices of sediment to bury into the substrate

Seamone, S. G.; Syme, D. A.

10.1101/834986 — zoology — Posted on 2019-11-08

2588 The early local and systemic Type I interferon responses to ultraviolet B light exposure are cGAS dependent.

Skopelja-Gardner, S.; An, J.; Tai, J.; Tanaka, L.; Sun, X.; Hermanson, P.; Kawasumi, M.; Green, R.; Gale, M.; Kalus, A.; Werth, V. P.; Elkon, K. B.

10.1101/835132 — immunology — Posted on 2019-11-08

2589 Non-Equilibrial Evolutionary Dynamics in Undersaturated Communities

Halloway, A. H.; Stankova, K.; Brown, J. S.

10.1101/834838 — evolutionary biology — Posted on 2019-11-08

2590 Hidden impacts of environmental stressors on freshwater: Cytoscape(R) correlation networks for community ecotoxicology analysis.

Lozano, V. L.

10.1101/834622 — ecology — Posted on 2019-11-08

2591 Persistent loss of biologically-rich tropical forests in the Indian Eastern Himalaya

sheth, c.; Parashuram, D.; Datta, A.

10.1101/827360 — ecology — Posted on 2019-11-08

2592 Transects, quadrats, or points? What is the best combination to get a precise estimation of a coral community?

Montilla, L. M.; Miyazawa, E.; Ascanio, A.; Lopez-Hernandez, M. A.; Marino-Briceno, G.; Rebolledo, Z.; Rivera, A.; S. Mancilla, D.; Verde, A.; Croquer, A.

10.1101/832790 — ecology — Posted on 2019-11-08

2593 Hippocampus has lower oxygenation and weaker control of brain blood flow than cortex, due to microvascular differences

Shaw, K.; Bell, L.; Boyd, K.; Grijseels, D. M.; Clarke, D.; Bonnar, O.; Crombag, H.; Hall, C. N.

10.1101/835728 — neuroscience — Posted on 2019-11-08

2594 Optimization of whole-genome sequencing of Plasmodium falciparum from low-density dried blood spot samples

Teyssier, N. B.; Chen, A.; Duarte, E. M.; Sit, R.; Greenhouse, B.; Tessema, S. K.

10.1101/835389 — molecular biology — Posted on 2019-11-08

2595 Conversion of a defensive toxin-antitoxin system into an offensive T6SS effector in Burkholderia

Yadav, S. K.; Magotra, A.; Krishnan, A.; Ghosh, S.; Kumar, R.; Das, J.; Jha, G.

10.1101/835710 — microbiology — Posted on 2019-11-08

2596 Outer Membrane Vesicles Mediated Horizontal Transfer of an Aerobic Denitrification Gene between Escherichia coli

Luo, Y.; Miao, J.; Qiao, W.

10.1101/835694 — microbiology — Posted on 2019-11-08

2597 Comparative genomic analyses and a novel linkage map for cisco (Coregonus artedi) provides insight into chromosomal evolution and rediploidization across salmonids

Blumstein, D. M.; Campbell, M. A.; Hale, M. C.; Sutherland, B. J. G.; McKinney, G. J.; Stott, W.; Larson, W. A.

10.1101/834937 — genomics — Posted on 2019-11-08

2598 Paradoxical role of AT-rich interactive domain 1A in restraining pancreatic carcinogenesis

Ferri-Borgogno, S.; Barui, S.; McGee, A. M.; Griffiths, T.; Singh, P. K.; Piett, C. G.; Ghosh, B.; Bhattacharyya, S.; Singhi, A.; Pradhan, K.; Verma, A.; Nagel, Z.; Maitra, A.; Gupta, S.

10.1101/835793 — cancer biology — Posted on 2019-11-08

2599 A causal role for mouse superior colliculus in visual perceptual decision-making

Wang, L.; McAlonan, K.; Goldstein, S.; Gerfen, C. R.; Krauzlis, R. J.

10.1101/835066 — animal behavior and cognition — Posted on 2019-11-08

2600 Mapping the growth effect of previously hidden ubiquitin alleles using an overexpression based mutational scan

Mavor, D.; Bolon, D. N. A.; Mishra, P.

10.1101/831503 — genetics — Posted on 2019-11-08

2601 Using Chaos for Facile High-throughput Fabrication of Ordered Multilayer Micro- and Nanostructures

Chavez-Madero, C.; Diaz de Leon-Derby, M.; Samandari, M.; Mendoza-Buenrostro, C. C.; Ceballos-Gonzalez, C. F.; Bolivar-Monsalve, E. J.; Holmberg, S.; Garza-Flores, N. A.; Almajhadi, M. A.; Gonzalez-Gamboa, I.; Yee-de Leon, J. F.; Martinez-Chapa, S. O.; Rodriguez, C. A.; Wickramasinghe, H. K.; Madou, M.; Khademhosseini, A.; Zhang, Y. S.; Alvarez, M. M.; Trujillo-de Santiago, G.

10.1101/833772 — bioengineering — Posted on 2019-11-08

2602 Bionic 3D printed corals

Wangpraseurt, D.; You, S.; Azam, F.; Jacucci, G.; Gaidarenko, O.; Hildebrand, M.; Kuhl, M.; Smith, A. G.; Davey, M. P.; Smith, A.; Deheyn, D. D.; Chen, S.; Vignolini, S.

10.1101/834051 — bioengineering — Posted on 2019-11-08

2603 Bayesian Modeling Reveals Ultrasensitivity Underlying Metabolic Compensation in the Cyanobacterial Circadian Clock

Hong, L.; Lavrentovich, D. O.; Chavan, A.; Leypunskiy, E.; Li, E.; Matthews, C.; LiWang, A.; Rust, M. J.; Dinner, A. R.

10.1101/835280 — systems biology — Posted on 2019-11-08

2604 Systematic mapping of genetic interactions for de novo fatty acid synthesis

Aregger, M.; Lawson, K. A.; Billmann, M.; Costanzo, M.; Tong, A. H. Y.; Chan, K.; Rahman, M.; Brown, K. R.; Ross, C.; Usaj, M.; Nedyalkova, L.; Sizova, O.; Habsid, A.; Pawling, J.; Lin, Z.-Y.; Abdouni, H.; Weiss, A.; Mero, P.; Dennis, J. W.; Gingras, A.-C.; Myers, C. L.; Andrews, B. J.; Boone, C.; Moffat, J.

10.1101/834721 — systems biology — Posted on 2019-11-08

2605 A structure-based deep learning framework for protein engineering

Shroff, R.; Cole, A. W.; Morrow, B. R.; Diaz, D. J.; Donnell, I.; Gollihar, J.; Ellington, A. D.; Thyer, R.

10.1101/833905 — synthetic biology — Posted on 2019-11-08

2606 INTRANASAL GLYPHOSATE-BASED HERBICIDE ADMINISTRATION ALTERS THE REDOX BALANCE AND THE CHOLINERGIC SYSTEM IN THE MOUSE BRAIN

Gallegos, C. E.; Bartos, M.; Gumilar, F.; Raisman-Vozari, R.; Minetti, A.; Baier, C. J.

10.1101/834820 — pharmacology and toxicology — Posted on 2019-11-08

2607 Boosting Brain Signal Variability Underlies Liberal Shifts in Decision Bias

Kloosterman, N. A.; Kosciessa, J. Q.; Lindenberger, U.; Fahrenfort, J. J.; Garrett, D. D.

10.1101/834614 — neuroscience — Posted on 2019-11-08

2608 Primate homologs of mouse cortico-striatal circuits

Balsters, J. H.; Zerbi, V.; Sallet, J.; Wenderoth, N.; Mars, R. B.

10.1101/834481 — neuroscience — Posted on 2019-11-08

2609 Transmission network reconstruction for foot-and-mouth disease outbreaks incorporating farm-level covariates

Firestone, S. M.; Hayama, Y.; Lau, M. S. Y.; Yamamoto, T.; Nishi, T.; Bradhurst, R.; Demirhan, H.; Stevenson, M. A.; Tsutsui, T.

10.1101/835421 — microbiology — Posted on 2019-11-08

2610 Genomic characterization of the non-O1/non-O139 Vibrio cholerae strain that caused a gastroenteritis outbreak in Santiago, Chile, 2018

Arteaga, M.; Velasco, J.; Rodriguez, S.; Vidal, M.; Arellano, C.; Silva, F.; Carreno, L. J.; Vidal, R. M.; Montero, D. A.

10.1101/835090 — microbiology — Posted on 2019-11-08

2611 A high-fat/high-protein, Atkins-type diet exacerbates Clostridioides (Clostridium) difficile infection in mice, whereas a high-carbohydrate diet protects

Mefferd, C. C.; Bhute, S. S.; Phan, J. R.; Villarama, J. V.; Do, D. M.; Alarcia, S.; Abel-Santos, E.; Hedlund, B. P.

10.1101/834903 — microbiology — Posted on 2019-11-08

2612 Autotrophic and mixotrophic metabolic network fluxes suggest versatile lifestyle for the anammox bacterium Candidatus Kuenenia stuttgartiensis

Lawson, C. E.; de Graaf, R. M.; Nuijten, G.; Jacobson, T. B.; Pabst, M.; Stevenson, D. M.; Jetten, M. S. M.; Noguera, D. R.; McMahon, K. D.; Amador-Noguez, D.; Lücker, S.

10.1101/835298 — microbiology — Posted on 2019-11-08

2613 Depth-discrete eco-genomics of Lake Tanganyika reveals roles of diverse microbes, including candidate phyla, in tropical freshwater nutrient cycling

Tran, P. Q.; McIntyre, P. B.; Kraemer, B. M.; Vadeboncoeur, Y.; Kimirei, I. A.; Tamatamah, R.; McMahon, K. D.; Anantharaman, K.

10.1101/834861 — microbiology — Posted on 2019-11-08

2614 Multiple evidences suggest sox2 as the main driver of a young and complex sex determining ZW/ZZ system in turbot (Scophthalmus maximus)

Martinez, P.; Robledo, D.; Taboada, X.; Blanco, A.; Gomez-Tato, A.; Alvarez-Blazquez, B.; Cabaleiro, S.; Piferrer, F.; Bouza, C.; Vinas, A. M.

10.1101/834556 — genomics — Posted on 2019-11-08

2615 Extreme phylogenomic diversity in non-pathogenic Xanthomonas strains associated with citrus

Bansal, K.; Kumar, S.; Patil, P. B.

10.1101/835645 — genomics — Posted on 2019-11-08

2616 Fast-evolving alignment sites are highly informative for reconstructions of deep Tree of Life phylogenies

Rangel, L. T.; Fournier, G. P.

10.1101/835504 — evolutionary biology — Posted on 2019-11-08

2617 Characterization of a Human Liver NIST Reference Material fit for Proteomics Applications

Davis, W. C.; Kilpatrick, L. E.; Ellisor, D. L.; Neely, B. A.

10.1101/834663 — biochemistry — Posted on 2019-11-08

2618 Evaluation of ACMG Rules for In silico Evidence Strength Using An Independent Computational Tool Absent of Circularities on ATM and CHEK2 Breast Cancer Cases and Controls

Young, C. C.; Feng, B.-J.; Mackenzie, C. B.; Girard, E.; Hu, D.; Iwasaki, Y.; Momozawa, Y.; Lesueur, F.; Ziv, E. C.; Neuhausen, S. L.; Tavtigian, S. V.

10.1101/835264 — genetics — Posted on 2019-11-08

2619 Teleost fish can accurately estimate distance travelled

Karlsson, C.; Willis, J.; Patel, M.; Burt de Perera, T.

10.1101/834341 — animal behavior and cognition — Posted on 2019-11-08

2620 Theoretical relation between axon initial segment geometry and excitability

Goethals, S.; Brette, R.

10.1101/834671 — neuroscience — Posted on 2019-11-08

2621 Allele-Specific QTL Fine-Mapping with PLASMA

Wang, A. T.; Shetty, A. H.; O'Connor, E.; Bell, C.; Pomerantz, M. M.; Freedman, M. L.; Gusev, A. L.

10.1101/650242 — bioinformatics — Posted on 2019-11-08

2622 Uncovering the hidden antibiotic potential of Cannabis

Farha, M. A.; El-Halfawy, O. M.; Gale, R. T.; MacNair, C. R.; Carfrae, L. A.; Zhang, X.; Jentsch, N. G.; Magolan, J.; Brown, E. D.

10.1101/833392 — microbiology — Posted on 2019-11-08

2623 Quantitative Models of Phage-Antibiotics Combination Therapy

Rodriguez-Gonzalez, R. A.; Leung, C. Y.; Chan, B. K.; Turner, P. E.; Weitz, J. S.

10.1101/633784 — microbiology — Posted on 2019-11-08

2624 Antimicrobial resistance gene prevalence in a population of patients with advanced dementia is related to specific pathobionts

Rowan-Nash, A. D.; Araos, R.; D'Agata, E. M.; Belenky, P.

10.1101/783969 — microbiology — Posted on 2019-11-08

2625 Constrained sampling from deep generative image models reveals mechanisms of human target detection

Fruend, I.

10.1101/578633 — neuroscience — Posted on 2019-11-08

2626 Active sensing in groups: (what) do bats hear in the sonar cocktail party nightmare?

Beleyur, T.; Goerlitz, H. R.

10.1101/817734 — animal behavior and cognition — Posted on 2019-11-08

2627 Cortical changes in motor preparation facilitate changes in motor execution following an intervention in severe chronic hemiparetic stroke

Wilkins, K. B.; Dewald, J. P. A.; Yao, J.

10.1101/547083 — neuroscience — Posted on 2019-11-08

2628 Retrieved-context theory of memory in emotional disorders

Cohen, R. T.; Kahana, M. J.

10.1101/817486 — neuroscience — Posted on 2019-11-08

2629 Spatial attention enhances cortical tracking of quasi-rhythmic visual stimuli

Tabarelli, D.; Keitel, C.; Gross, J.; Baldauf, D.

10.1101/689711 — neuroscience — Posted on 2019-11-08

2630 A statistical method for identifying consistently important features across samples

Sauerwald, N.; Kingsford, C.

10.1101/833624 — genomics — Posted on 2019-11-08

2631 Individualized multi-omic pathway deviation scores using multiple factor analysis

Rau, A.; Manansala, R.; Flister, M.; Rui, H.; Jaffrezic, F.; Laloë, D.; Auer, P.

10.1101/827022 — bioinformatics — Posted on 2019-11-08

2632 DeepDBP: Deep Neural Networks for Identification of DNA-binding Proteins

Shadab, S.; Khan, M. T. A.; Neezi, N. A.; Adilina, S.; Shatabda, S.

10.1101/829432 — bioinformatics — Posted on 2019-11-08

2633 AMR - An R Package for Working with Antimicrobial Resistance Data

Berends, M. S.; Luz, C. F.; Friedrich, A. W.; Sinha, B. N.; Albers, C. J.; Glasner, C.

10.1101/810622 — microbiology — Posted on 2019-11-08

2634 gplas: a comprehensive tool for plasmid analysis using short-read graphs

Arredondo-Alonso, S.; Bootsma, M.; Hein, Y.; Rogers, M. R. C.; Corander, J.; Willems, R. J.; Schürch, A. C.

10.1101/835900 — bioinformatics — Posted on 2019-11-08

2635 Micronutrient composition and microbial community analysis across diverse landraces of the Ethiopian orphan crop enset

Tamrat, S.; Borrell, J. S.; Biswas, M. K.; Gashu, D.; Wondimu, T.; Vasquez-Londono, C. A.; Heslop-Harrison, P. J. S.; Demissew, S.; Wilkin, P.; Howes, M.-J. R.

10.1101/834564 — plant biology — Posted on 2019-11-08

2636 The Genome of the Charophyte Alga Penium margaritaceum Bears Footprints of the Evolutionary Origins of Land Plants

Jiao, C.; Sørensen, I.; Sun, X.; Sun, H.; Behar, H.; Alseekh, S.; Philippe, G.; Lopez, K. P.; Sun, L.; Reed, R.; Jeon, S.; Kiyonami, R.; Zhang, S.; Fernie, A. R.; Brumer, H.; Domozych, D. S.; Fei, Z.; Rose, J.

10.1101/835561 — plant biology — Posted on 2019-11-08

2637 A comprehensive data-driven model of cat primary visual cortex

Antolik, J.; Monier, C.; Fregnac, Y.; Davison, A. P.

10.1101/416156 — neuroscience — Posted on 2019-11-08

2638 Neuroanatomical Risk Factors for Post Traumatic Stress Disorder (PTSD) in Recent Trauma Survivors

Ben-Zion, Z.; Artzi, M.; Niry, D.; Keynan, J. N.; Admon, R.; Sharon, H.; Halpern, P.; Liberzon, I.; Shalev, A.; Hendler, T.

10.1101/721134 — neuroscience — Posted on 2019-11-08

2639 Insights into ancestry and adaptive evolution of the Mycobacterium tuberculosis complex from analysis of the emerging pathogen Mycobacterium riyadhense

Guan, Q.; Garbati, M.; Mfarrej, S.; AlMutairi, T.; Smyth, A.; Singh, A.; Fagbo, S.; Browne, J.; urRahman, M. A.; Alruwaili, A.; Hoosen, A.; Meehan, C.; Nakajima, C.; Suzuki, Y.; Bhatt, A.; Gordon, S.; AlAsmari, F.; Pain, A.

10.1101/728923 — evolutionary biology — Posted on 2019-11-08

2640 Benthic jellyfish dominate water mixing in mangrove ecosystems

Durieux, D. M.; Gemmell, B.; Du Clos, K.

10.1101/784173 — ecology — Posted on 2019-11-08

2641 Structural similarities between some common fluorophores used in biology and marketed drugs, endogenous metabolites, and natural products

O'Hagan, S.; Kell, D. B.

10.1101/834325 — bioinformatics — Posted on 2019-11-08

2642 Evolution toward maximum transport capacity of the Ttg2 ABC system in Pseudomonas aeruginosa

Yero, D.; Costenaro, L.; Conchillo-Sole, O.; Diaz-Lobo, M.; Mayo, A.; Ferrer-Navarro, M.; Vilaseca, M.; Gibert, I.; Daura, X.

10.1101/834812 — microbiology — Posted on 2019-11-08

2643 Stochastic Sampling of Structural Contexts Improves the Scalability and Accuracy of RNA 3D Modules Identification

Sarrazin-Gendron, R.; Yao, H.-T.; Reinharz, V.; Oliver, C. G.; Ponty, Y.; Waldispuhl, J.

10.1101/834762 — bioinformatics — Posted on 2019-11-08

2644 Dynamic Bayesian networks for integrating multi-omics time-series microbiome data

Ruiz-Perez, D.; Lugo-Martinez, J.; Bourguignon, N.; Mathee, K.; Lerner, B.; Bar-Joseph, Z.; Narasimhan, G.

10.1101/835124 — bioinformatics — Posted on 2019-11-08

2645 Dual indexed design of in-Drop single-cell RNA-seq libraries improves sequencing quality and throughput

Southard-Smith, A. N.; Simmons, A. J.; Chen, B.; Jones, A. L.; Ramirez-Solano, M. A.; Vega, P. N.; Scurrah, C. R.; Zhao, Y.; Brenan, M. J.; Xuan, J.; Porter, E. B.; Chen, X.; Brenan, C. J. H.; Liu, Q.; Quigley, L. N. M.; Lau, K. N.

10.1101/835488 — molecular biology — Posted on 2019-11-08

2646 Pan-cancer image-based detection of clinically actionable genetic alterations

Kather, J. N.; Heij, L. R.; Grabsch, H. I.; Kooreman, L. F.; Loeffler, C.; Echle, A.; Krause, J.; Muti, H. S.; Niehues, J. M.; Sommer, K. A.; Bankhead, P.; Schulte, J. J.; Cipriani, N. A.; Ortiz-Bruechle, N.; Patnaik, A.; Srisuwananukorn, A.; Brenner, H.; Hoffmeister, M.; Van den Brandt, P. A.; Jaeger, D.; Trautwein, C.; Pearson, A. T.; Luedde, T.

10.1101/833756 — genetics — Posted on 2019-11-08

2647 Optimising risk-based surveillance for early detection of invasive plant pathogens.

Mastin, A. J.; Gottwald, T. R.; van den Bosch, F.; Cunniffe, N. J.; Parnell, S. R.

10.1101/834705 — ecology — Posted on 2019-11-08

2648 An extensively optimized chromatin immunoprecipitation protocol for quantitatively comparable and robust results

de Jonge, W. J.; Brok, M.; Kemmeren, P.; Holstege, F. C. P.

10.1101/835926 — molecular biology — Posted on 2019-11-08

2649 A DNA nanoassembly-based approach to map membrane protein nanoenvironments

Ambrosetti, E.; Bernardinelli, G.; Hoffecker, I. T.; Hartmanis, L.; Sandberg, R.; Hogberg, B.; Teixeira, A. I.

10.1101/836049 — bioengineering — Posted on 2019-11-08

2650 Primary human macrophages are polarized towards pro-inflammatory phenotypes in alginate hydrogels

Delcassian, D.; Maleka, A.; Opoku, D.; Palomares Cabeza, V.; Merry, C.; Jackson, A. M.

10.1101/824391 — immunology — Posted on 2019-11-08

2651 Engineered niches support the development of human dendritic cells in humanized mice

Anselmi, G.; Vaivode, K.; Dutertre, C.-A.; Bourdely, P.; Missolo-Koussou, Y.; Newell, E.; Hickman, O.; Wood, K.; Saxena, A.; Helft, J.; Ginhoux, F.; Guermonprez, P.

10.1101/835223 — immunology — Posted on 2019-11-08

2652 High density cultivation for efficient sesquiterpenoid biosynthesis in Synechocystis sp. PCC 6803

Dienst, D.; Wichmann, J.; Mantovani, O.; Rodrigues, J.; Lindberg, P.

10.1101/834499 — bioengineering — Posted on 2019-11-08

Mahdavi, A.; Qin, Y.; Aubry, A.-S.; Cornec, D.; Kulikova, S.; Pinault, D.

10.1101/833459 — neuroscience — Posted on 2019-11-08

2654 Reduced functional connectivity between left frontal and right auditory cortices during speech perception in congenital amusia.

Jasmin, K.; Dick, F.; Stewart, L.; Tierney, A. T.

10.1101/834366 — neuroscience — Posted on 2019-11-08

2655 Detection of interictal epileptiform discharges:A comparison of on-scalp MEG and conventional MEGmeasurements

Westin, K.; Pfeiffer, C.; Andersen, L. M.; Ruffieux, S.; Cooray, G.; Kalaboukhov, A.; Winkler, D.; Ingvar, M.; Schneiderman, J.; Lundqvist, D.

10.1101/834275 — neuroscience — Posted on 2019-11-08

2656 RNF219 regulates CCR4-NOT function in mRNA translation and deadenylation

Guenole, A.; Velilla, F.; Chartier, A.; Sardet, C.; Simonelig, M.; Sobhian, B.

10.1101/834283 — molecular biology — Posted on 2019-11-08

2657 Anticipating xenogenic pollution at the source: Impact of sterilizations on DNA release from microbial cultures

Calderon Franco, D.; Lin, Q.; van Loosdrecht, M. C. M.; Abbas, B. A.; Weissbrodt, D. G.

10.1101/833228 — microbiology — Posted on 2019-11-08

2658 Improving tuberculosis surveillance by detecting international transmission using publicly available whole-genome sequencing data

Sanchini, A.; Jandrasits, C.; Tembrockhaus, J.; Kohl, T. A.; Utpatel, C.; Maurer, F. P.; Niemann, S.; Haas, W.; Renard, B. Y.; Kroeger, S.

10.1101/834150 — microbiology — Posted on 2019-11-08

2659 Native Elongation Transcript sequencing reveals temperature dependent dynamics of nascent RNAPII transcription in Arabidopsis

Kindgren, P.; Ivanov, M.; Marquardt, S.

10.1101/834507 — genomics — Posted on 2019-11-08

2660 A tradeoff between robustness to environmental fluctuations and speed of evolution

Schmid, M.; Paniw, M.; Postuma, M.; Ozgul, A.; Guillaume, F.

10.1101/834234 — evolutionary biology — Posted on 2019-11-08

2661 LincRNAs involved in DCS-induced fear extinction: Shedding light on the transcriptomic dark matter

Malan-Muller, S.; de Souza, V. B. C.; Daniels, W. M.; Seedat, S.; Robinson, M.; Hemmings, S. M. J.

10.1101/834242 — genomics — Posted on 2019-11-08

2662 Biophysical models of cis-regulation as interpretable neural networks

Tareen, A.; Kinney, J. B.

10.1101/835942 — bioinformatics — Posted on 2019-11-08

2663 The Hippo pathway oncoprotein YAP promotes melanoma cell invasion and spontaneous metastasis

Zhang, X.; Yang, L.; Szeto, P.; Zhang, Y.; Amarasinghe, K.; Li, J.; McLean, C.; Shackleton, M.; Harvey, K.

10.1101/835454 — cancer biology — Posted on 2019-11-08

2664 The mitogenome of Norway spruce and a reappraisal of mitochondrial recombination in plants

Sullivan, A. R.; Eldfjell, Y.; Schiffthaler, B.; Delhomme, N.; Asp, T.; Hebelstrup, K. H.; Keech, O.; Öberg, L.; Moller, I. M.; Arvestad, L.; Street, N. R.; Wang, X.-R.

10.1101/682732 — genomics — Posted on 2019-11-08

2665 Direct readout of neural stem cell transgenesis with an integration-coupled gene expression switch

Kumamoto, T.; Maurinot, F.; Barry, R.; Vaslin, C.; Vandormael-Pournin, S.; Le, M.; Lerat, M.; Cohen-Tannoudji, M.; Rebsam, A.; Loulier, K.; Nedelec, S.; Tozer, S.; Livet, J.

10.1101/834424 — developmental biology — Posted on 2019-11-08

2666 DRP1-mediated regulation of mitochondrial dynamics determines the apoptotic response upon embryonic differentiation.

Pernaute, B.; Sanchez, J. M.; Perez-Montero, S.; di Gregorio, A.; Lima, A.; Lawlor, K.; Bowling, S.; Liccardi, G.; Tomas, A.; Meier, P.; Rutter, G.; Barbaric, I.; Rodriguez, T. A.

10.1101/835751 — developmental biology — Posted on 2019-11-08

2667 A trimeric Rab7 GEF controls NPC1-dependent lysosomal cholesterol export

van den Boomen, D. J.; Sienkiewicz, A.; Berlin, I.; Jongsma, M. L.; van Elsland, D. M.; Luzio, J. P.; Neefjes, J. J.; Lehner, P. J.

10.1101/835686 — cell biology — Posted on 2019-11-08

2668 Optimising Renewal Models for Real-Time Epidemic Prediction and Estimation

Parag, K. V.; Donnelly, C. A.

10.1101/835181 — bioinformatics — Posted on 2019-11-08

2669 A TBX5 dosage-sensitive gene regulatory network for human congenital heart disease

Bruneau, B.; Kathiriya, I. S.; Rao, K. S.; Iacono, G.; Devine, W. P.; Hota, S. K.; Lai, M. H.; Garay, B. I.; Thomas, R.; Blair, A. P.; Gong, H. Z.; Wasson, L. K.; Goyal, P.; Sukonnik, T.; Akgun, G. A.; Bernard, L. D.; Akerberg, B.; Gu, F.; Li, K.; Pu, W. T.; Stuart, J.; Seidman, C.; Seidman, J. G.; Heyn, H.

10.1101/835603 — developmental biology — Posted on 2019-11-08

2670 The assembly of the Drosophila mushroom body circuit and its regulation by Semaphorin 1a

Lin, C.-H.; Lin, S.

10.1101/835595 — developmental biology — Posted on 2019-11-08

2671 The histone modification reader ZCWPW1 links histone methylation to repair of PRDM9-induced meiotic double stand breaks

Huang, T.; Yuan, S.; Li, M.; Yu, X.; Zhang, J.; Yin, Y.; Liu, C.; Gao, L.; Li, W.; Liu, J.; Chen, Z.-J.; Liu, H.

10.1101/836023 — developmental biology — Posted on 2019-11-08

2672 Data-driven inference of crosstalk in the tumor microenvironment

Ghoshdastider, U.; Naeini, M. M.; Rohatgi, N.; Revkov, E.; Wong, A.; Solai, S.; Nguyen, T. T.; Yeong, J.; Iqbal, J.; Tan, P. H.; Chowbay, B.; DasGupta, R.; Jacobsen Skanderup, A.

10.1101/835512 — cancer biology — Posted on 2019-11-08

2673 Hopper: A Mathematically Optimal Algorithm for Sketching Biological Data

DeMeo, B.; Berger, B.

10.1101/835033 — bioinformatics — Posted on 2019-11-08

2674 Schema: A general framework for integrating heterogeneous single-cell modalities

Singh, R.; Narayan, A.; Hie, B.; Berger, B.

10.1101/834549 — bioinformatics — Posted on 2019-11-08

2675 Allosteric deregulation of phenylalanine biosynthesis evolved with the emergence of vascular plants

El-Azaz, J.; Canovas, F. M.; Barcelona, B.; Avila, C.; de la Torre, F. N.

10.1101/834747 — plant biology — Posted on 2019-11-08

2676 SPOCK1 promotes breast cancer progression via interacting with SIX1 and activating AKT/mTOR signaling pathway

Xu, M.; Zhang, X. l.; Zhang, S. n.; Piao, J. j.; Yang, Y.; Wang, X. y.; Lin, Z. h.

10.1101/834135 — cancer biology — Posted on 2019-11-08

2677 Stochastic model of T Cell repolarization during target elimination (I)

Hornak, I.; Rieger, H.

10.1101/822171 — biophysics — Posted on 2019-11-08

2678 A fly model establishes distinct mechanisms for synthetic CRISPR/Cas9 sex distorters

Fasulo, B.; Meccariello, A.; Morgan, M.; Borufka, C.; Papathanos, P. A.; Windbichler, N.

10.1101/834630 — synthetic biology — Posted on 2019-11-08

2679 Lis1 regulates Phagocytosis by co-localising with actin in the Phagocytic cup

Chhatre, A.; Sanghavi, P.; mallik, r.

10.1101/835769 — cell biology — Posted on 2019-11-08

2680 Local Glutamate-Mediated Dendritic Plateau Potentials Change the State of the Cortical Pyramidal Neuron

Gao, P. P.; Graham, J. W.; Zhou, W.-L. L.; Jang, J.; Angulo, S.; Dura-Bernal, S.; Hines, M.; Lytton, W. W.; Antic, S. D.

10.1101/828582 — neuroscience — Posted on 2019-11-08

2681 The right temporoparietal junction is causally associated with embodied perspective taking

Martin, A. K.; Kessler, K.; Cooke, S.; Huang, J.; Meinzer, M.

10.1101/832469 — neuroscience — Posted on 2019-11-08

2682 Clonally distinct differentiation trajectories shape CD8+ memory T cell heterogeneity after acute viral infections in humans

Mold, J. E.; Modolo, L.; Hard, J.; Zamboni, M.; Larsson, A. J. M.; Eriksson, C.-J.; Stahl, P.; Borgstrom, E.; Picelli, S.; Reinius, B.; Sandberg, R.; Reu, P.; Talavera-Lopez, C.; Andersson, B.; Blom, K.; Sandberg, J.; Picard, F.; Michaelsson, J.; Frisen, J.

10.1101/832899 — immunology — Posted on 2019-11-08

2683 Live-Cell Imaging and Quantification of PolyQ Aggregates by Stimulated Raman Scattering of Selective Deuterium Labeling

Miao, K.; Wei, L.

10.1101/820217 — biophysics — Posted on 2019-11-08

2684 Optimized double emulsion flow cytometry with high-throughput single droplet isolation

Brower, K. K.; Carswell-Crumpton, C.; Klemm, S.; Cruz, B.; Kim, G.; Calhoun, S. G. K.; Nichols, L.; Fordyce, P. M.

10.1101/803460 — bioengineering — Posted on 2019-11-08

2685 Learning Divisive Normalization in Primary Visual Cortex

Günthner, M. F.; Cadena, S. A.; Denfield, G. H.; Walker, E. Y.; Tolias, A. S.; Bethge, M.; Ecker, A. S.

10.1101/767285 — neuroscience — Posted on 2019-11-08

2686 Analysis of genomic-length HBV sequences to determine genotype and subgenotype reference sequences

McNaughton, A. L.; Revill, P.; Littlejohn, M.; Matthews, P. C.; Ansari, M. A.

10.1101/831891 — microbiology — Posted on 2019-11-08

2687 Dysregulated RASGRP1 expression through RUNX1 mediated transcription promotes autoimmunity

Baars, M.; Douma, T.; Simeonov, D. R.; Myers, D. R.; Banerjee, S.; Kulhanek, K.; Zwakenberg, S.; Baltissen, M. P.; de Roock, S.; van Wijk, F.; Vermeulen, M.; Marson, A.; Roose, J. P.; Vercoulen, Y.

10.1101/656454 — immunology — Posted on 2019-11-08

2688 Multiplex genomic edition in Ashbya gossypii using CRISPR-Cpf1

Revuelta, J. L.; Jimenez, A.; Hoff, B.

10.1101/834218 — genomics — Posted on 2019-11-08

2689 A fly model establishes distinct mechanisms for synthetic CRISPR/Cas9 sex distorters

Fasulo, B.; Meccariello, A.; Morgan, M.; Borufka, C.; Papathanos, P. A.; Windbichler, N.

10.1101/834630 — synthetic biology — Posted on 2019-11-08

2690 Computational dissociation of dopaminergic and cholinergic effects on voluntary behavior and inhibitory control

Aponte, E. A.; Schoebi, D.; Stephan, K. E.; Heinzle, J.

10.1101/645093 — pharmacology and toxicology — Posted on 2019-11-08

2691 A multi-omic cohort as a reference point for promoting a healthy human gut microbiome

Jie, Z.; Liang, S.; Ding, Q.; Li, F.; Tang, S.; Wang, D.; Lin, Y.; Chen, P.; Cai, K.; Qiu, X.; Li, Q.; Liao, Y.; Zhou, D.; Lian, H.; Zuo, Y.; Chen, X.; Rao, W.; Ren, Y.; Wang, Y.; Zi, J.; Wang, R.; Zhou, H.; Lu, H.; Wang, X.; Zhang, W.; Zhang, T.; Xiao, L.; Zong, Y.; Liu, W.; Yang, H.; Wang, J.; Hou, Y.; Liu, X.; Kristiansen, K.; Zhong, H.; Jia, H.; Xu, X.

10.1101/585893 — microbiology — Posted on 2019-11-08

2692 CNVmap: a method and software to detect and map copy number variants from segregation data

Falque, M.; Jebreen, K.; Paux, E.; Knaak, C.; Mezmouk, S.; Martin, O. C.

10.1101/778753 — genetics — Posted on 2019-11-08

2693 Using genetics to disentangle the complex relationship between food choices and health status

Pirastu, N.; McDonnell, C.; Grzeszkowiak, E. J.; Mounier, N.; Imamura, F.; Day, F. R.; Zheng, J.; Taba, N.; Concas, M. P.; Repetto, L.; Kentistou, K. A.; Robino, A.; Esko, T.; Joshi, P. K.; Fischer, K.; Ong, K. K.; Gaunt, T. R.; Kutalik, Z.; Perry, J.; Wilson, J. F.

10.1101/829952 — genetics — Posted on 2019-11-08

2694 Force-exerting lateral protrusions in fibroblastic cell contraction

Padhi, A.; Singh, K.; Franco-Barraza, J.; Marston, D.; Cukierman, E.; Hahn, K. M.; Kapania, R.; Nain, A. S.

10.1101/711507 — cell biology — Posted on 2019-11-08

2695 PKMYT1 is a computationally predicted target for kidney cancer

Torre, D.; Fernandez, N. F.; Ma'ayan, A.

10.1101/677245 — bioinformatics — Posted on 2019-11-08

2696 Structure of the cell-binding component of the Clostridium difficile binary toxin reveals a novel macromolecular assembly

10.1101/833699 — biophysics — Posted on 2019-11-08

2697 singleCellHaystack: A clustering-independent method for finding differentially expressed genes in single-cell transcriptome data

Vandenbon, A.; Diez, D.

10.1101/557967 — bioinformatics — Posted on 2019-11-08

2698 Generation and molecular characterization of CRISPR/Cas9-induced mutations in 63 immunity-associated genes in tomato reveals specificity and a range of gene modifications

Zhang, N.; Roberts, H. M.; Van Eck, J.; Martin, G. B.

10.1101/835108 — plant biology — Posted on 2019-11-08

2699 C9orf72-derived arginine-containing dipeptide repeats associate with axonal transport machinery and impede microtubule-based motility

Fumagalli, L.; Young, F. L.; Boeynaems, S.; De Decker, M.; Mehta, A.; Swijsen, A.; Fazal, R.; Guo, W.; Moisse, M.; Beckers, J.; Dedeene, L.; Selvaraj Bhuvaneish, T.; Vandoorne, T.; Madan, V.; van Blitterswijk, M.; Raitcheva, D.; McCampbell, A.; Poesen, K.; Gitler, A. D.; Koch, P.; Vanden Berghe, P.; Thal, D. R.; Verfaillie, C.; Chandran, S.; Van Den Bosch, L.; Bullock, S.; Van Damme, P.

10.1101/835082 — neuroscience — Posted on 2019-11-08

2700 Genome-wide association study identifies genetic factors that modify age at onset in Machado-Joseph disease

Akcimen, F.; Martins, S.; Liao, C.; Bourassa, C. V.; Catoire, H.; Nichoson, G. A.; Riess, O.; Raposo, M.; Franca, M. C.; Vasconcelos, J.; Lima, M.; Lopes-Cendes, I.; Saraiva-Pereira, M. L.; Jardim, L. B.; Sequeiros, J.; Dion, P. A.; Rouleau, G.

10.1101/834754 — genetics — Posted on 2019-11-08

2701 Characterizing the floral resources of a North American metropolis using a honey bee foraging assay

Sponsler, D. B.; Shump, D.; Richardson, R. T.; Grozinger, C. M.

10.1101/834804 — ecology — Posted on 2019-11-08

2702 Neurofibromin regulates metabolic rate via neuronal mechanisms in Drosophila

Botero, V.; Stahl, B. A.; Grenci, E. C.; Boto, T.; Park, S. J.; King, L. B.; Murphy, K. R.; Colodner, K. J.; Walker, J. A.; Keene, A. C.; Ja, W. W.; Tomchik, S. M.

10.1101/834788 — neuroscience — Posted on 2019-11-08

2703 Leaderless short ORFs in mycobacteria comprise a translational regulon

Canestrari, J. G.; Lasek-Nesselquist, E.; Upadhyay, A.; Rofaeil, M.; Champion, M. M.; Wade, J. T.; Derbyshire, K. M.; Gray, T. A.

10.1101/834739 — microbiology — Posted on 2019-11-08

Carter, S. D.; Mamede, J. I.; Hope, T. J.; Jensen, G. J.

10.1101/835322 — cell biology — Posted on 2019-11-07

2705 Depletion of H3K79 methylation specifically enhances reprogramming to pluripotency but not transdifferentiation

Wille, C. K.; Sridharan, R.

10.1101/835413 — developmental biology — Posted on 2019-11-07

2706 Escape from nonsense mediated decay associates with anti-tumor immunogenicity

10.1101/823716 — cancer biology — Posted on 2019-11-07

2707 Mechanisms Generating Cancer Genome Complexity From A Single Cell Division Error

Umbreit, N.; Zhang, C.-Z.; Lynch, L. D.; Blaine, L. J.; Cheng, A. M.; Tourdot, R. W.; Sun, L.; Almubarak, H. F.; Judge, K.; Mitchell, T. J.; Spektor, A.; Pellman, D.

10.1101/835058 — cancer biology — Posted on 2019-11-07

2708 Comparative Anatomical, Ultrasonographical and Radiological studies of the biliary system of Rabbits and Domestic cats in Egypt

Mohamed, M.; Reem, R. T.; Maher, M. A.; Alaa, H. E.; Farghali, H. A.

10.1101/834408 — scientific communication and education — Posted on 2019-11-07

2709 Individual housing of male C57BL/6J mice after weaning impairs growth and predisposes for obesity

Schipper, L.; van Heijningen, S.; Karapetsas, G.; van der Beek, E.; van Dijk, G.

10.1101/834416 — physiology — Posted on 2019-11-07

2710 Exposure to hypomethylating agent 5-aza-2-deoxycytidine (decitabine) causes rapid, severe DNA damage, telomere elongation and mitotic dysfunction in human WIL2-NS cells

Bull, C.; Mayrhofer, G.; Fenech, M.

10.1101/834382 — cancer biology — Posted on 2019-11-07

2711 A comparative study of the capacity of mesenchymal stromal cell lines to form spheroids

Deynoux, M.; Sunter, N.; Ducrocq, E.; Dakik, H.; Guibon, R.; Burlaud-Gaillard, J.; Brisson, L.; Le Nail, L.-R.; Heraul, O.; Domenech, J.; Roingeard, P.; Fromont, G.; Mazurier, F.

10.1101/834390 — bioengineering — Posted on 2019-11-07

2712 Study on the influence of G82S RAGE polymorphism on RAGE-Amyloid interaction in AD pathology

C, R. C.; Lukose, B.; Rani, P.

10.1101/834374 — neuroscience — Posted on 2019-11-07

2713 Prediction of multiple drug resistant pulmonary tuberculosis against drug sensitive pulmonary tuberculosis by CT nodular consolidation sign

Huang, X.-L.; Skrahin, A.; Lu, P.-X.; Alexandru, S.; Crudu, V.; Astrovko, A.; Skrahina, A.; Taaffe, J.; Harris, M.; Long, A.; Wollenberg, K.; Engle, E.; Hurt, D.; Akhundova, I.; Ismayilov, S.; Mammadbayov, E.; Gadirova, H.; Abuzarov, R.; Seyfaddinova, M.; Avaliani, Z.; Vashakidze, S.; Shubladze, N.; Nanava, U.; Strambu, I.; Zaharia, D.; Muntean, A.; Ghita, E.; Bogdan, M.; Mindru, R.; Spinu, V.; Sora, A.; Ene, C.; Sergueev, E.; Kirichenko, V.; Lapitski, V.; Snezhko, E.; Kovalev,, V.; Tuzikov, A.; Gabrielian, A.; Rosenthal, A.; Tartakovsky, M.; Wang, Y.-X.

10.1101/833954 — pathology — Posted on 2019-11-07

2714 Analysis of polyclonal vector integration sites using Nanopore sequencing as a scalable, cost-effective platform

Zhang, P.; Ganesamoorthy, D.; Nguyen, S. H.; Au, R.; Coin, L. J. M.; Tey, S.-K.

10.1101/833897 — genomics — Posted on 2019-11-07

2715 Structural basis for the binding selectivity of human CDY chromodomains

Dong, C.; Liu, Y.; Lyu, T.; Beldar, S.; Lamb, K.; Tempel, W.; Li, Y.; Li, Z.; James, L.; Qin, S.; Wang, Y.; Min, J.

10.1101/820647 — molecular biology — Posted on 2019-11-07

2716 Use of a glycan library reveals a new model for enteric virus oligosaccharide binding and virion stabilization

Lu, H.; Lehrman, M. A.; Pfeiffer, J. K.

10.1101/834101 — microbiology — Posted on 2019-11-07

2717 Real-time sampling of travelers shows intestinal colonization by multidrug-resistant bacteria to be a dynamic process with multiple transient acquisitions

Kantele, A.; Kuenzli, E.; Dunn, S. J.; Dance, D. A.; Newton, P. N.; Davong, V.; Mero, S.; Pakkanen, S.; Neumayr, A.; Hatz, C.; Snaith, A.; Kallonen, T.; Corander, J.; McNally, A.

10.1101/827915 — microbiology — Posted on 2019-11-07

2718 Host fruit as a suitable bacteria growth substrate that promotes larval development of Bactrocera dorsalis (Diptera: Tephritidae)

Akami, M.; Ren, X.; Wang, Y.; Mansour, A.; Cao, S.; Qi, X.; Ngakou, A.; Niu, C.

10.1101/834119 — microbiology — Posted on 2019-11-07

2719 Immune checkpoint proteins are conserved across 160 million years of evolution and are expressed on transmissible cancers

Flies, A. S.; Darby, J. M.; Lennard, P. R.; Murphy, P. R.; Ong, C. E. B.; Pinfold, T. L.; Lyons, A. B.; Woods, G. M.; Patchett, A. L.

10.1101/831404 — immunology — Posted on 2019-11-07

2720 Serum proteomics expands on identifying more high-affinity antibodies in immunized rabbits than deep B-cell repertoire sequencing alone

Bonissone, S. R.; Castellana, N.; Lima, T.; Harris, K.; Davison, L.; Avanzino, B.; Trinklein, N.; Patel, A.

10.1101/833871 — immunology — Posted on 2019-11-07

2721 How Array Design Affects SNP Ascertainment Bias

Geibel, J.; Reimer, C. H. U. W.; Weigend, S.; Weigend, A.; Pook, T.; Simianer, H.

10.1101/833541 — genomics — Posted on 2019-11-07

2722 Genetic architecture of male courtship behavior differences in the parasitoid wasp genus Nasonia (Hymenoptera; Pteromalidae)

Gadau, J.; Pietsch, C.; Gerritsma, S.; Ferber, S.; van de Zande, L.; van den Assem, J.; Beukeboom, L.

10.1101/831735 — genetics — Posted on 2019-11-07

2723 A cell-free biosynthesis platform for modular construction of protein glycosylation pathways

Kightlinger, W.; Duncker, K. E.; Ramesh, A.; Thames, A. H.; Natarajan, A.; Stark, J. C.; Yang, A.; Lin, L.; DeLisa, M. P.; Mrksich, M.; Jewett, M. C.

10.1101/833806 — synthetic biology — Posted on 2019-11-07

2724 The thermodynamics of thinking: connections between neural activity, energy metabolism and blood flow

Buxton, R. B.

10.1101/833855 — neuroscience — Posted on 2019-11-07

2725 Conversion of Diffusely Abnormal White Matter to Focal Lesions is Linked to Progression in Secondary Progressive Multiple Sclerosis

Dadar, M.; Narayanan, S.; Arnold, D. L.; Collins, D. L.; Maranzano, J.

10.1101/832345 — neuroscience — Posted on 2019-11-07

2726 Neuroprogesterone synthesis in hypothalamic astrocytes is associated with a pubertal increase in membrane ERα levels

Mohr, M. A.; Falcy, B. A.; Laham, B. J.; Wong, A. M.; Micevych, P. E.

10.1101/833434 — neuroscience — Posted on 2019-11-07

2727 Dissemination of linezolid-resistance through sex pheromone plasmid transfer in Enterococcs faecalis

Zou, J.; Tang, Z.; Yan, J.; Liu, H.; Chen, Y.; Zhang, D.; Zhao, J.; Tang, Y.; Zhang, J.; Xia, Y.

10.1101/832691 — microbiology — Posted on 2019-11-07

2728 An open dataset of Plasmodium falciparum genome variation in 7,000 worldwide samples

Pearson, R. D.; Amato, R.; Kwiatkowski, D. P.; MalariaGEN Plasmodium falciparum Community Project,

10.1101/824730 — genomics — Posted on 2019-11-07

2729 Genetic Genealogical Methods Used to Identify African American Diaspora Relatives in the Study of Family Identity among Ghanaian Members of the Kassena Ethnic Group

David, L. T.; Jones, L.

10.1101/833996 — genetics — Posted on 2019-11-07

2730 Competition-by-drought interactions change phenotypic plasticity and the direction of selection on Arabidopsis traits

Lorts, C. M.; Lasky, J. R.

10.1101/833848 — evolutionary biology — Posted on 2019-11-07

2731 Modeling phylogenetic biome shifts on a planet with a past

Landis, M. J.; Edwards, E. J.; Donoghue, M. J.

10.1101/832527 — evolutionary biology — Posted on 2019-11-07

2732 Altered motoneuron properties and spinal serotonin contribute to motor deficits in a rabbit hypoxia ischemia model of cerebral palsy

Steele, P. R.; Cavarsan, C. F.; Dowaliby, L.; Westefeld, M.; Drobyshevsky, A.; Gorassini, M. A.; Quinlan, K. A.

10.1101/817957 — neuroscience — Posted on 2019-11-07

2733 Signal processing in auditory cortex underlies degraded speech sound discrimination in noise

Town, S. M.; Wood, K. C.; Bizley, J. K.

10.1101/833558 — neuroscience — Posted on 2019-11-07

2734 pumilio regulates sleep homeostasis in response to chronic sleep deprivation in Drosophila melanogaster

De Jesus, L. A.; Rodriguez, N.; Francia, M.; Aleman, J.; Pacheco, C.; Ortega, J.; Nieves, R.; Fuenzalida, N.; Ghezzi, A.; Agosto, J. L.

10.1101/833822 — neuroscience — Posted on 2019-11-07

2735 Uncovering the hidden antibiotic potential of Cannabis

Farha, M. A.; El-Halfawy, O. M.; Gale, R. T.; MacNair, C. R.; Carfrae, L. A.; Zhang, X.; Jentsch, N. G.; Magolan, J.; Brown, E. D.

10.1101/833392 — microbiology — Posted on 2019-11-07

2736 Microbial community structure and ecology in sediments of a pristine mangrove forest

Santana, C. O.; Spealman, P.; Melo, V.; Gresham, D.; Jesus, T. B.; Chinalia, F. A.

10.1101/833814 — microbiology — Posted on 2019-11-07

2737 Host-dependent induction of disease tolerance to infection by tetracycline antibiotics

Colaco, H. G.; Barros, A.; Neves-Costa, A.; Seixas, E.; Pedroso, D.; Velho, T. R.; Willmann, K.; Yi, H.-S.; Shong, M.; Benes, V.; Weis, S.; Köcher, T.; Moita, L. F.

10.1101/833269 — immunology — Posted on 2019-11-07

2738 Microbiability of meat quality and carcass composition traits in swine

KHANAL, P.; Maltecca, C.; Schwab, C.; Fix, J.; Tiezzi, F.

10.1101/833731 — genomics — Posted on 2019-11-07

2739 Transcription imparts architecture, function, and logic to enhancer units

Tippens, N. D.; Liang, J.; Leung, K. Y.; Ozer, A.; Booth, J. G.; Lis, J.; Yu, H.

10.1101/818849 — genomics — Posted on 2019-11-07

2740 Nanopore sequencing of DNA concatemers reveals higher-order features of chromatin structure

Ulahannan, N.; Pendleton, M.; Deshpande, A. S.; Schwenk, S.; Behr, J. M.; Dai, X.; Tyer, C.; Rughani, P.; Kudman, S.; Adney, E.; Tian, H.; Wilkes, D.; Mosquera, J. M.; Stoddart, D.; Turner, D. J.; Juul, S.; Harrington, E.; Imielinski, M.

10.1101/833590 — genomics — Posted on 2019-11-07

2741 Learning the properties of adaptive regions with functional data analysis

Mughal, M. R.; Koch, H.; Huang, J.; Chiaromonte, F.; DeGiorgio, M.

10.1101/834010 — genomics — Posted on 2019-11-07

2742 Genome-wide association study identifies 49 common genetic variants associated with handedness.

10.1101/831321 — genetics — Posted on 2019-11-07

2743 Incipient local adaptation in a fungus: evolution of heavy metal tolerance through allelic and copy-number variation

Bazzicalupo, A.; Ruytinx, J.; Ke, Y.-H.; Coninx, L.; Colpaert, J.; Nguyen, N.; Vilgalys, R.; Branco, S.

10.1101/832089 — evolutionary biology — Posted on 2019-11-07

2744 Seed plant families with diverse mycorrhizal states have higher diversification rates

Mujica, M. I.; Perez, M. F.; Burin, G.; Quental, T. B.

10.1101/824441 — evolutionary biology — Posted on 2019-11-07

2745 Evaluation of host effects on ectomycorrhizal fungal community compositions in a forest landscape in northern Japan

Matsuoka, S.; Sugiyama, Y.; Tateno, R.; Imamura, S.; Kawaguchi, E.; Osono, T.

10.1101/834127 — ecology — Posted on 2019-11-07

2746 Doing nothing and what it looks like... Inactivity in fattening cattle

Hintze, S.; Maulbetsch, F.; Asher, L.; Winckler, C.

10.1101/833012 — animal behavior and cognition — Posted on 2019-11-07

2747 Resolving intrinsic ambiguities of the fMRI signal in the human brain

Liu, E. Y.; Haist, F.; Shin, D. D.; Buxton, R. B.

10.1101/833681 — neuroscience — Posted on 2019-11-07

2748 Matrix Inversion and Subset Selection (MISS): A novel pipeline for quantitative mapping of diverse cell types across the murine brain

Torok, J.; Mezias, C.; Maia, P.; Raj, A.

10.1101/833566 — neuroscience — Posted on 2019-11-07

2749 Detecting (un)seen change: The neural underpinnings of (un)conscious prediction errors

Rowe, E. G.; Tsuchiya, N.; Garrido, M. I.

10.1101/832386 — neuroscience — Posted on 2019-11-07

2750 Nicotine e-cigarette vapor inhalation effects on nicotine & cotinine plasma levels and somatic withdrawal signs in adult male Wistar rats

Montanari, C.; Kelley, L. K.; Kerr, T. M.; Cole, M.; Gilpin, N. W.

10.1101/833293 — neuroscience — Posted on 2019-11-07

2751 Transcriptional changes are regulated by metabolic pathway dynamics but decoupled from protein levels

Mellor, J.; Feltham, J. E.

10.1101/833921 — molecular biology — Posted on 2019-11-07

2752 A novel resistance pathway for calcineurin inhibitors in the human pathogenic Mucorales Mucor circinelloides

Vellanki, S.; Billmyre, R. B.; Lorenzen, A.; Campbell, M.; Turner, B.; Huh, E. Y.; Heitman, J.; Lee, S. C.

10.1101/834143 — microbiology — Posted on 2019-11-07

2753 Mapping polyclonal antibody responses in non-human primates vaccinated with HIV Env trimer subunit vaccines

Nogal, B.; Bianchi, M.; Cottrell, C.; Kirchdoerfer, R. N.; Sewall, L. M.; Turner, H. L.; Zhao, F.; Sok, D.; Burton, D.; Hangartner, L.; Ward, A. B.

10.1101/833715 — immunology — Posted on 2019-11-07

2754 A reservoir of rituximab-resistant splenic memory B cells contributes to relapses after B-cell depletion therapy

Crickx, E.; Chappert, P.; Weller, S.; Sokal, A.; Azzaoui, I.; Vandenberghe, A.; Bonnard, G.; Rossi, G.; Fadeev, T.; Storck, S.; Galicier, L.; Meignin, V.; Riviere, E.; Godeau, B.; Michel, M.; Weill, J.-C.; Reynaud, C.-A.; Mahevas, M.

10.1101/833343 — immunology — Posted on 2019-11-07

2755 A Unified Molecular Signature of Systemic Lupus Erythematosus Revealed by Integrated, Multi-Cohort Transcriptomic Analysis

Haynes, W. A.; Haddon, D. J.; Diep, V. K.; Khatri, A.; Bongen, E.; Yiu, G.; Balboni, I.; Bolen, C. R.; Mao, R.; Utz, P. J.; Khatri, P.

10.1101/834093 — immunology — Posted on 2019-11-07

2756 Complete genome sequence of Oryctes rhinoceros Nudivirus isolated from Coconut Rhinoceros Beetle in the Solomon Islands

Etebari, K.; Filipovic, I.; Rasic, G.; Devine, G. J.; Tsatsia, H.; Furlong, M. J.

10.1101/834036 — genomics — Posted on 2019-11-07

2757 Secondary environmental variation creates a shifting evolutionary watershed for the methyl- parathion hydrolase enzyme

Anderson, D. W.; Baier, F.; Yang, G.; Tokuriki, N.

10.1101/833764 — evolutionary biology — Posted on 2019-11-07

2758 The effect of resource dynamics on species packing in diverse ecosystems

Cui, W.; Marsland, R.; Mehta, P.

10.1101/833533 — biophysics — Posted on 2019-11-07

2759 Linear B-cell epitope prediction: a performance review of currently available methods

Galanis, K. A.; Nastou, K. C.; Papandreou, N. C.; Petichakis, G. N.; Iconomidou, V. A.

10.1101/833418 — bioinformatics — Posted on 2019-11-07

2760 Neuronal Proteostasis is mediated by the switch-like expression of Heme-regulated Kinase 1, acting as both a sensor and effector

Alvarez-Castelao, B.; tom Dieck, S.; Fusco, C. M.; Perez, J. D.; Dolin-Asp, P.; Schuman, E. M.

10.1101/833178 — neuroscience — Posted on 2019-11-07

2761 How we choose multi-component rewards

Pastor-Bernier, A.; Volkmann, K.; Stasiak, A.; Grabenhorst, F.; Schultz, W.

10.1101/832881 — neuroscience — Posted on 2019-11-07

2762 Unveiling the dimer/monomer propensities of Smad MH1-DNA complexes

Ruiz, L.; Kaczmarska, Z.; Gomes, T.; Aragon, E.; Torner, C.; Freier, R.; Baginski, B.; Martin-Malpartida, P.; de Martin Garrido, N.; Marquez, J. A.; Cordeiro, T. N.; Pluta, R.; Macias, M. J.

10.1101/833319 — molecular biology — Posted on 2019-11-07

2763 Antiretroviral APOBEC3 Cytidine Deaminases Alter HIV-1 Provirus Integration Site Profiles

Ajoge, H. O.; Renner, T. M.; Kohio, H. P.; Coleman, M. D.; Langlois, M.-A.; Barr, S. D.

10.1101/833475 — microbiology — Posted on 2019-11-07

2764 A statistical method for identifying consistently important features across samples

Sauerwald, N.; Kingsford, C.

10.1101/833624 — genomics — Posted on 2019-11-07

2765 Ecological divergence of DNA methylation patterns at distinct spatial scales

De Kort, H.; Panis, B.; Deforce, D.; Van Nieuwerburgh, F.; Honnay, O.

10.1101/832816 — ecology — Posted on 2019-11-07

2766 Genomic encryption of digital data stored in synthetic DNA

Grass, R. N.; Heckel, R.; Dessimoz, C.; Stark, W. J.

10.1101/831883 — synthetic biology — Posted on 2019-11-07

2767 Coding of social novelty in the hippocampal CA2 region and its disruption and rescue in a mouse model of schizophrenia

Donegan, M. L.; Stefanini, F.; Meira, T.; Gordon, J. A.; Fusi, S.; Siegelbaum, S. A.

10.1101/833723 — neuroscience — Posted on 2019-11-07

2768 Brain states govern the spatio-temporal dynamics of resting state functional connectivity

Aedo-Jury, F.; Schwalm, M.; Hamzehpour, L.; Stroh, A.

10.1101/832998 — neuroscience — Posted on 2019-11-07

2769 Analysis of genomic-length HBV sequences to determine genotype and subgenotype reference sequences

McNaughton, A.; Revill, P.; Littlejohn, M.; Matthews, P. C.; Ansari, M. A.

10.1101/831891 — microbiology — Posted on 2019-11-07

2770 The hair cycle underlies regulation of Langerhans cell renewal.

Voisin, B.; Chartoire, D.; Devouassoux, C.; Kowalczyk-Quintas, C.; Clauss, F.; Lezot, F.; Schneider, P.; Flacher, V.; Mueller, C. G.

10.1101/832774 — immunology — Posted on 2019-11-07

2771 Impaired phagocytic function in CX3CR1+ tissue-resident skeletal muscle macrophages prevents muscle recovery after influenza A virus-induced pneumonia in aged mice

Runyan, C. E.; Welch, L. C.; Lecuona, E.; Shigemura, M.; Amarelle, L.; Abdala-Valencia, H.; Joshi, N.; Lu, Z.; Nam, K.; Markov, N. S.; McQuattie-Pimentel, A. C.; Piseaux-Aillon, R.; Politanska, Y.; Sichizya, L.; Watanabe, S.; Williams, K. J. N.; Budinger, G. S.; Sznajder, J. I.; Misharin, A. V.

10.1101/833236 — immunology — Posted on 2019-11-07

2772 Leveraging pleiotropy to discover and interpret GWAS results for sleep-associated traits

Akle, S.; Chun, S.; Teodosiadis, A.; Cade, B. E.; Wang, H.; Sofer, T.; Evans, D. S.; Stone, K. L.; Gharib, S. A.; Mukherjee, S.; Palmer, L. J.; Hillman, D.; Rotter, J. I.; Stamatoyannopoulos, J. A.; Redline, S.; Cotsapas, C.; Sunyaev, S. R.

10.1101/832162 — genetics — Posted on 2019-11-07

2773 Using genetics to disentangle the complex relationship between food choices and health status

10.1101/829952 — genetics — Posted on 2019-11-07

2774 A process-based framework for metacommunity ecology

Thompson, P. L.; Guzman, L. M.; De Meester, L.; Horvath, Z.; Ptacnik, R.; Vanschoenwinkel, B.; Viana, D. S.; Chase, J.

10.1101/832170 — ecology — Posted on 2019-11-07

2775 The impact of reporter kinetics on the interpretation of data gathered with fluorescent reporters

Sabatini, B.

10.1101/834895 — neuroscience — Posted on 2019-11-07

2776 Arc Regulates Transcription of Genes for Plasticity, Excitability and Alzheimer’s Disease

Leung, H.-W.; Foo, G. W. Q.; VanDongen, A. M.

10.1101/833988 — neuroscience — Posted on 2019-11-07

2777 The right temporoparietal junction is causally associated with embodied perspective taking

Martin, A. K.; Kessler, K.; Cooke, S.; Huang, J.; Meinzer, M.

10.1101/832469 — neuroscience — Posted on 2019-11-07

2778 The Threat of Scream paradigm: A tool for studying sustained physiological and subjective anxiety

Beaurenaut, M.; Tokarski, E.; Dezecache, G.; Grezes, J.

10.1101/834309 — neuroscience — Posted on 2019-11-07

2779 PCK1 and DHODH drive colorectal cancer liver metastatic colonization and nucleotide biosynthesis under hypoxia

Yamaguchi, N.; Weinberg, E.; Nguyen, A.; Liberti, M. V.; Goodarzi, H.; Janjigian, Y. Y.; Paty, P. B.; Saltz, L. B.; Kingham, T. P.; Loo, J. M.; Stanchina, E. d.; Tavazoie, S. F.

10.1101/833186 — cancer biology — Posted on 2019-11-07

2780 Motor output and control input in flapping flight: a compact model of the deforming wing kinematics of manoeuvring hoverflies

Nagesh, I.; Walker, S. M.; Taylor, G. K.

10.1101/759175 — animal behavior and cognition — Posted on 2019-11-07

2781 Contribution of NPY Y5 Receptors to the Reversible Structural Remodeling Of Basolateral Amygdala Dendrites in Male Rats Associated with NPY-mediated Stress Resilience.

Michaelson, S. D.; Miranda Tapia, A. P.; McKinty, A. D.; Silveira Villarroel, H.; Mackay, J. P.; Urban, J. H.; Colmers, W. F.

10.1101/777979 — neuroscience — Posted on 2019-11-07

2782 A mechanical model reveals that non-axisymmetric buckling lowers the energy barrier associated with membrane neck constriction

Vasan, R.; Rudraraju, S.; Akamatsu, M.; Garikipati, K.; Rangamani, P.

10.1101/672485 — biophysics — Posted on 2019-11-07

2783 The Role of Hippocampus during Observational Learning

Fuentealba Escobar, Y.; Valdes, J. L.

10.1101/832758 — neuroscience — Posted on 2019-11-07

2784 Bacterial Swarming as a Protective Response to Intestinal Stress

Chen, W.; De, A.; Li, H.; Lukin, D. J.; Szymczak, W.; Sun, K.; Kelly, L.; Wright, J. R.; Lamendella, R.; Ghosh, S.; Kearns, D. B.; He, Z.; Jobin, C.; Luo, X.; Byju, A.; Chatterjee, S.; Yeoh, B. S.; Vijay-Kumar, M.; Tang, J. X.; Mani, S.

10.1101/759886 — microbiology — Posted on 2019-11-07

2785 Sustained Activation of PV+ Interneurons in Auditory Cortex Enables Robust Divisive Gain Control for Complex and Naturalistic Stimuli

Gothner, T.; Goncalves, P. J.; Sahani, M.; Linden, J. F.; Hildebrandt, K. J.

10.1101/832642 — neuroscience — Posted on 2019-11-07

2786 Dissecting the coma spectrum using Bayesian classification

Dietz, M. J.; Zareini, B.; Naatanen, R.; Overgaard, M. S.

10.1101/832824 — neuroscience — Posted on 2019-11-07

2787 Attention mechanism-based deep learning pan-specificmodel for interpretable MHC-I peptide binding prediction

Jin, J.; Liu, Z.; Nasiri, A.; Cui, Y.; Louis, S.-Y.; Zhang, A.; Zhao, Y.; Hu, J.

10.1101/830737 — bioinformatics — Posted on 2019-11-07

2788 Morphogenesis guided by 3D patterning of growth factors in biological matrices

Broguiere, N.; Luechtefeld, I.; Trachsel, L.; Mazunin, D.; Bode, J.; Lutolf, M.; Zenobi-Wong, M.

10.1101/828947 — bioengineering — Posted on 2019-11-07

2789 Dopamine buffering capacity imaging: A pharmacodynamic fMRI method for staging Parkinson disease

Black, K. J.; Acevedo, H. K.; Koller, J. M.

10.1101/817106 — neuroscience — Posted on 2019-11-07

2790 Neurocomputational mechanisms underlying immoral decisions benefiting self or others

Qu, C.; Hu, Y.; Tang, Z.; Derrington, E.; Dreher, J.-C.

10.1101/832659 — neuroscience — Posted on 2019-11-07

2791 mRNA decapping machinery targets transcripts of the LBD3/ASL9 transcription factor to authorize formation of apical hook and lateral roots in Arabidopsis

Zuo, Z.; Roux, M. E.; Rodriguez, E.; Chevalier, J. R.; Dagdas, Y.; Yamashino, T.; Petersen, M.

10.1101/834465 — plant biology — Posted on 2019-11-07

2792 Decoding and modulating multiregional communication in the mood processing network

Qiao, S.; Sedillo, J. I.; Brown, K. A.; Ferrentino, B.; Pesaran, B.

10.1101/731547 — neuroscience — Posted on 2019-11-07

2793 Estimating and interpreting nonlinear receptive fields of sensory responses with deep neural network models

Keshishian, M.; Akbari, H.; Khalighinejad, B.; Herrero, J.; Mehta, A.; Mesgarani, N.

10.1101/832212 — neuroscience — Posted on 2019-11-07

2794 Uneven missing data skews phylogenomic relationships within the lories and lorikeets

Smith, B. T.; Mauck, W. M.; Benz, B.; Andersen, M. J.

10.1101/398297 — evolutionary biology — Posted on 2019-11-07

2795 A Hierarchical Bayesian Mixture Model forInferring the Expression State of Genes inTranscriptomes

Thompson, A.; May, M. R.; Moore, B. R.; Kopp, A.

10.1101/711630 — bioinformatics — Posted on 2019-11-07

2796 Reward certainty and preference bias selectively shape voluntary decisions

Zajkowski, W.; Krzeminski, D.; Barone, J.; Evans, L. H.; Zhang, J.

10.1101/832311 — neuroscience — Posted on 2019-11-07

2797 Multi-sensory integration in the mouse cortical connectome using a network diffusion model

Shadi, K.; Dyer, E.; Dovrolis, C.

10.1101/832485 — neuroscience — Posted on 2019-11-07

2798 Deep Multi-State Dynamic Recurrent Neural Networks Operating on Wavelet Based Neural Features for Robust Brain Machine Interfaces

Haghi, B.; Kellis, S.; Shah, S.; Ashok, M.; Bashford, L.; Kramer, D.; Lee, B.; Liu, C.; Andersen, R. A.; Emami, A.

10.1101/710327 — neuroscience — Posted on 2019-11-07

2799 Influence of stimulus complexity on the specificity of visual perceptual learning

Bakhtiari, S.; Awada, A.; Pack, C.

10.1101/832303 — neuroscience — Posted on 2019-11-07

2800 Clonally distinct differentiation trajectories shape CD8+ memory T cell heterogeneity after acute viral infections in humans

Mold, J. E.; Michaelsson, J.; Modolo, L.; Hard, J.; Frisen, J.; Zamboni, M.; Larsson, A. J. M.; Eriksson, C.-J.; Stahl, P.; Borgstrom, E.; Sandberg, R.; Picelli, S.; Blom, K.; Reinius, B.; Talavera-Lopez, C.; Andersson, B.; Sandberg, J.; Picard, F.; Reu, P.

10.1101/832899 — immunology — Posted on 2019-11-07

2801 Oral tenofovir disoproxil fumarate/emtricitabine for HIV pre-exposure prophylaxis increases expression of type I/III interferon-stimulated factors in the gastrointestinal tract but not in the blood

Hughes, S. M.; Levy, C. N.; Calienes, F.; Stekler, J. D.; Pandey, U.; Vojtech, L.; Berard, A. R.; Birse, K.; Noel-Romas, L.; Richardson, B.; Golden, J. B.; Cartwright, M.; Collier, A. C.; Stevens, C. E.; Curlin, M. E.; Holtz, T. H.; Mugo, N.; Irungu, E.; Katabira, E.; Muwonge, T.; Lama, J. R.; Baeten, J. M.; Burgener, A.; Lingappa, J. R.; McElrath, M. J.; Mackelprang, R.; McGowan, I.; Cranston, R. D.; Cameron, M. J.; Hladik, F.

10.1101/701961 — immunology — Posted on 2019-11-07

2802 Somatic genetic drift and multi-level selection in modular species

Yu, L.; Bostrom, C.; Bayer, T.; Franzenburg, S.; Dagan, T.; Reusch, T. B. H.

10.1101/833335 — evolutionary biology — Posted on 2019-11-07

2803 Facultative social exploitation among Myxoccocus bacteria due to non-responsive local competition

smith, j.; Velicer, G. J.

10.1101/833517 — evolutionary biology — Posted on 2019-11-07

2804 NF1 regulates mesenchymal glioblastoma plasticity and aggressiveness through the AP-1 transcription factor FOSL1

Marques, C.; Unterkircher, T.; Kroon, P.; Izzo, A.; Gargiulo, G.; Kling, E.; Schnell, O.; Nelander, S.; Wagner, E. F.; Bakiri, L.; Carro, M. S.; Squatrito, M.

10.1101/834531 — cancer biology — Posted on 2019-11-07

2805 PREDICTING EVOLUTIONARY TRANSITIONS IN TOOTH COMPLEXITY WITH A MORPHOGENETIC MODEL

Couzens, A.; Sears, K. E.; Rücklin, M.

10.1101/833749 — evolutionary biology — Posted on 2019-11-07

2806 Blinking Statistics and Molecular Counting in direct Stochastic Reconstruction Microscopy (dSTORM)

Patel, L.; Owen, D. M.; Cohen, E. A. K.

10.1101/834572 — biophysics — Posted on 2019-11-07

2807 Dopaminergic and opioidergic regulation of implicit and explicit wanting and liking of social and nonsocial rewards

Korb, S.; Goetzendorfer, S. J.; Sezen, P.; Graf, I.; Willeit, M.; Eisenegger, C.; Silani, G.

10.1101/832196 — neuroscience — Posted on 2019-11-07

2808 Protein Crowding mediates Passive Membrane Remodeling in ESCRT-induced Formation of Intraluminal Vesicles

Liese, S.; Wenzel, E. M.; Rojas Molina, R. V.; Schultz, S. W.; Stenmark, H.; Raiborg, C.; Carlson, A.

10.1101/834457 — biophysics — Posted on 2019-11-07

2809 CRISPR-based screens uncover determinants of immunotherapy response and potential combination therapy strategies

Ramkumar, P.; Tian, R.; Seyler, M.; Leong, J. T.; Chen, M.; Choudhry, P.; Hechler, T.; Shah, N.; Wong, S. W.; Martin, T. G.; Wolf, J. L.; Roybal, K. T.; Pahl, A.; Taunton, J.; Wiita, A. P.; Kampmann, M.

10.1101/833707 — cancer biology — Posted on 2019-11-07

2810 Semi-supervised machine learning facilitates cell colocalization and tracking in intravital microscopy

Pizzagalli, D. U.; Thelen, M.; Gonzalez, S. F.; Krause, R.

10.1101/829838 — systems biology — Posted on 2019-11-07

2811 A simple method for spray-on gene editing in planta.

Doyle, C.; Higginbottom, K.; Swift, T. A.; Winfield, M.; Bellas, C.; Benito-Alifonso, D.; Fletcher, T.; Galan, C. M.; Edwards, K.; Whitney, H. M.

10.1101/805036 — plant biology — Posted on 2019-11-07

2812 A minimal synaptic model for direction selective neurons in Drosophila

Zavatone-Veth, J.; Badwan, B.; Clark, D.

10.1101/833970 — neuroscience — Posted on 2019-11-07

2813 Transneuronal interactions facilitate axonal compartment formation

Bornstein, B.; Alyagor, I.; Berkun, V.; Meltzer, H.; Reh, F.; Keren-Shaul, H.; David, E.; Riemensperger, T.; Schuldiner, O.

10.1101/834515 — neuroscience — Posted on 2019-11-07

2814 Inference of population genetic structure from temporal samples of DNA

Francois, O.; Liegeois, S.; Demaille, B.; Jay, F.

10.1101/801324 — evolutionary biology — Posted on 2019-11-07

2815 Eco-evolutionary dynamics of nested Darwinian populations and the emergence of community-level heredity

Doulcier, G.; Lambert, A.; De Monte, S.; Rainey, P. B.

10.1101/827592 — evolutionary biology — Posted on 2019-11-07

2816 Microfluidic Removal of Teratoma-forming Cells from hiPSC-derived Neural Progenitor Cells

Wellmerling, K. M.; Lehmann, C.; Singh, A.; Kirby, B. J.

10.1101/830588 — developmental biology — Posted on 2019-11-07

2817 Damped oscillations of the probability of random events followed by absolute refractory period

Paraskevov, A. V.; Minkin, A. S.

10.1101/649392 — neuroscience — Posted on 2019-11-07

2818 Altering PRC2 activity partially suppresses ddm1 mutant phenotypes in Arabidopsis

Rougee, M.; Quadrana, L.; Zervudacki, J.; Colot, V.; Navarro, L.; Deleris, A.

10.1101/782219 — molecular biology — Posted on 2019-11-07

2819 Weak Acid Resistance A (WarA), a novel transcription factor required for regulation of weak-acid resistance and spore-spore heterogeneity in Aspergillus niger

Geoghegan, I. A.; Stratford, M.; Bromley, M.; Archer, D. B.; Avery, S. V.

10.1101/788141 — microbiology — Posted on 2019-11-07

2820 Arkadia via SNON enables NODAL-SMAD2/3 signaling effectors to transcribe different genes depending on their levels

Carthy, J. M.; Ioannou, M.; Episkopou, V.

10.1101/487371 — developmental biology — Posted on 2019-11-07

2821 Stimulus-modality independent activation of the brain network for language

Arana, S. L.; Marquand, A. F.; Hulten, A.; Hagoort, P.; Schoffelen, J. M.

10.1101/714998 — neuroscience — Posted on 2019-11-07

2822 Modulation of RNA condensation by the DEAD-box protein eIF4A

Tauber, D.; Tauber, G.; Khong, A.; Van Treeck, B.; Pelletier, J.; Parker, R.

10.1101/689802 — biochemistry — Posted on 2019-11-07

2823 Methplotlib: analysis of modified nucleotides from nanopore sequencing

De Coster, W.; Strazisar, M.

10.1101/826107 — bioinformatics — Posted on 2019-11-07

2824 A macro-ecological approach to predators’ functional response

Barbier, M.; Wojcik, L.; Loreau, M.

10.1101/832220 — developmental biology — Posted on 2019-11-07

2825 Her9/HES4 is required for retinal photoreceptor development, maintenance, and survival

Coomer, C. E.; Wilson, S. G.; Titialii-Torres, K. F.; Bills, J. D.; Krueger, L. A.; Petersen, R. A.; Turnbaugh, E. M.; Janesch, E. L.; Morris, A. C.

10.1101/833301 — developmental biology — Posted on 2019-11-07

2826 Serine and glycine are essential for human muscle progenitor cell population expansion

Gheller, B. J.; Blum, J. E.; Bender, E. L.; Gheller, M. E.; Lim, E. W.; Handzlik, M. K.; Stover, P. J.; Field, M. S.; Cosgrove, B. D.; Metallo, C. M.; Thalacker-Mercer, A. E.

10.1101/833798 — cell biology — Posted on 2019-11-07

2827 Cytoplasm localized ARID1B promotes oncogenesis in pancreatic cancer by activating RAF-ERK signaling

Animireddy, S.; Kavadipula, P.; Kotapalli, V.; Gowrishankar, S.; Rao, S.; Bashyam, M. D.

10.1101/830075 — cell biology — Posted on 2019-11-07

2828 MicroRNA 1253 regulation of WAVE2 and its relevance to health disparities in hypertension

Arkorful, M. A.; Noren Hooten, N.; Zhang, Y.; Hewitt, A. N.; Barrientos Sanchez, L.; Evans, M. K.; Dluzen, D. F.

10.1101/833673 — cell biology — Posted on 2019-11-07

2829 Fibrotic human lung extracellular matrix as a disease-specific substrate for 3D in-vitro models of pulmonary fibrosis

Germanguz, I.; Aranda, E.; Xiong, J. C.; Kissel, N.; Nichols, A.; Gadee, E.; O'Neill, J. D.

10.1101/833913 — cell biology — Posted on 2019-11-07

2830 Suppression of Docetaxel induced apoptosis in Survivin-depleted cells due to failure of sustained mitotic block

Han, T.-L.; Jiang, Z.; Sha, H.

10.1101/834259 — cancer biology — Posted on 2019-11-07

2831 CRISPR-based screens uncover determinants of immunotherapy response and potential combination therapy strategies

Ramkumar, P.; Tian, R.; Seyler, M.; Leong, J. T.; Choudhry, P.; Hechler, T.; Shah, N.; Wong, S. W.; Martin, T. G.; Wolf, J. L.; Roybal, K. T.; Pahl, A.; Taunton, J.; Wiita, A. P.; Kampmann, M.

10.1101/833707 — cancer biology — Posted on 2019-11-07

2832 A Germinal Center-Associated Microenvironmental Signature Reflects Malignant Phenotype and Outcome of Diffuse Large B-cell Lymphoma

Miyawaki, K.; Kato, K.; Sugio, T.; Sasaki, K.; Miyoshi, H.; Semba, Y.; Kikushige, Y.; Mori, Y.; Kunisaki, Y.; Iwasaki, H.; Miyamoto, T.; Kuo, F. C.; Aster, J. C.; Ohshima, K.; Maeda, T.; Akashi, K.

10.1101/833947 — cancer biology — Posted on 2019-11-07

2833 BeamDelta: simple alignment tool for optical systems

Hall, N. J.; Pinto, D. M. S.; Dobbie, I. M.

10.1101/833368 — biophysics — Posted on 2019-11-07

2834 LiGIoNs: A Computational Method for the Detection and Classification of Ligand-Gated Ion Channels

Nastou, K. C.; Petichakis, G. N.; Litou, Z. I.; Iconomidou, V. A.

10.1101/833350 — bioinformatics — Posted on 2019-11-07

2835 Varstation: a complete and efficient tool to support NGS data analysis

Faria, A. C. O.; Caraciolo, M.; Minillo, R. M.; Almeida, T. F.; Pereira, S. M.; Cervato, M. C.; Oliveira, J. B.

10.1101/833582 — bioinformatics — Posted on 2019-11-07

2836 Tailor: non-parametric and rapid score calibration method for database search-based peptide identification in shotgun proteomics

Sulimov, P.; Kertesz-Farkas, A.

10.1101/831776 — bioinformatics — Posted on 2019-11-07

2837 Unspecific binding but specific disruption of the group I intron by the StpA chaperone

Reinharz, V.; Tlusty, T.

10.1101/834176 — bioinformatics — Posted on 2019-11-07

2838 Sparsity of Protein-Protein Interaction Networks Hinders Function Prediction in Non-Model Species

Makrodimitris, S.; van Ham, R.; Reinders, M.

10.1101/832253 — bioinformatics — Posted on 2019-11-07

2839 \"GPress: a framework for querying General Feature Format (GFF) files and feature expression files in a compressed form\"

Meng, Q.; Ochoa, I.; Hernaez, M.

10.1101/833087 — bioinformatics — Posted on 2019-11-07

2840 Read trimming is not required for mapping and quantification of RNA-seq reads

Liao, Y.; Shi, W.

10.1101/833962 — bioinformatics — Posted on 2019-11-07

2841 PAMOGK: A Pathway Graph Kernel based Multi-Omics Clustering Approach for Discovering Cancer Patient Subgroups

Tepeli, Y. I.; Unal, A. B.; Akdemir, F. M.; Tastan, O.

10.1101/834168 — bioinformatics — Posted on 2019-11-07

2842 Maize Stem Buckling Failure is Dominated by Morphological Factors

Stubbs, C. J.; Larson, R.; Cook, D. D.

10.1101/833863 — bioengineering — Posted on 2019-11-07

2843 Sparse Ensemble Machine Learning to improve robustness of long-term decoding in iBMIs

Shaikh, S.; So, R.; Sibindi, T.; Libedinsky, C.; Basu, A.

10.1101/834028 — bioengineering — Posted on 2019-11-07

2844 MACS: Rapid aqueous clearing system for three-dimensional mapping of intact organs

Zhu, J.; Yu, T.; Li, Y.; Xu, J.; Qi, Y.; Yao, Y.; Ma, Y.; Wan, P.; Chen, Z.; Li, X.; Gong, H.; Luo, Q.; Zhu, D.

10.1101/832733 — bioengineering — Posted on 2019-11-07

2845 A Sparse Deep Learning Approach for Automatic Segmentation of Human Vasculature in Multispectral Optoacoustic Tomography

Chlis, N. K.; Karlas, A.; Fasoula, N.-A.; Kallmayer, M.; Eckstein, H.-H.; Theis, F. J.; Ntziachristos, V.; Marr, C.

10.1101/833251 — bioengineering — Posted on 2019-11-07

2846 Morphogenesis guided by 3D patterning of growth factors in biological matrices

Broguiere, N.; Luechtefeld, I.; Trachsel, L.; Mazunin, D.; Bode, J.; Lutolf, M.; Zenobi-Wong, M.

10.1101/828947 — bioengineering — Posted on 2019-11-07

2847 Characterization of the prion protein binding properties of antisense oligonucleotides

Reidenbach, A. G.; Minikel, E. V.; Zhao, H. T.; Guzman, S. G.; Leed, A. J.; Mesleh, M. F.; Kordasiewicz, H. B.; Schreiber, S. L.; Vallabh, S. M.

10.1101/816868 — biochemistry — Posted on 2019-11-07

2848 Allosteric coupling between alpha-rings of the 20S proteasome

Yu, Z.; Yu, Y.; Wang, F.; Myasnikov, A. G.; Coffino, P.; Cheng, Y.

10.1101/832113 — biochemistry — Posted on 2019-11-07

2849 Spatial encoding in the visual pathway arises in cortex and depends on active navigation

Diamanti, E. M.; Bai Reddy, C.; Schroeder, S.; Harris, K. D.; Saleem, A. B.; Carandini, M.

10.1101/832915 — neuroscience — Posted on 2019-11-07

2850 Mutations in Auxilin cause parkinsonism via impaired clathrin-mediated trafficking at the Golgi apparatus and synapse

Roosen, D. A.; Landeck, N.; Conti, M.; Smith, N.; Saez-Atienzar, S.; Ding, J.; Beilina, A.; Kumaran, R.; Kaganovich, A.; du Hoffmann, J.; Williamson, C.; Gershlick, D. C.; Bonet-Ponce, L.; Sampieri, L.; Bleck, C. K. E.; Liu, C.; Bonifacino, J. S.; Li, Y.; Lewis, P. A.; Cookson, M. R.

10.1101/830802 — neuroscience — Posted on 2019-11-07

2851 Evolution of microbial growth traits under serial dilution

Lin, J.; Manhart, M.; Amir, A.

10.1101/798678 — evolutionary biology — Posted on 2019-11-07

2852 Ultrastructure of the axonal periodic scaffold reveals a braid-like organization of actin rings

Vassilopoulos, S.; Gibaud, S.; Jimenez, A.; Caillol, G.; Leterrier, C.

10.1101/636217 — cell biology — Posted on 2019-11-07

2853 Integrins protect nociceptive neurons in models of paclitaxel-mediated peripheral sensory neuropathy

Shin, G. J.-e.; Pero, M. E.; Hammond, L. A.; Burgos, A.; Galindo, S. E.; Bartolini, F.; Grueber, W. B.

10.1101/829655 — neuroscience — Posted on 2019-11-07

2854 Gradual replacement of wild bees by honeybees in flowers of the Mediterranean Basin over the last 50 years

Herrera, C. M.

10.1101/828160 — ecology — Posted on 2019-11-07

2855 Evolutionary dynamics of microbial communities in bioelectrochemical systems.

Szydlowski, L.; Sorokin, A.; Vasieva, O.; Boerner, S.; Fedorovich, V.; Goryanin, I.

10.1101/725580 — systems biology — Posted on 2019-11-07

2856 CHANging Consciousness Epistemically (CHANCE): An empirical method to convert the subjective content of consciousness into scientific data

Tanaka, D. H.; Tanabe, T.

10.1101/495523 — neuroscience — Posted on 2019-11-07

2857 Chronic Bilateral Cochlear Implant Stimulation in Early-Deaf Rabbits Restores Neural Binaural Sensitivity

Sunwoo, W.; Delgutte, B.; Chung, Y.

10.1101/803627 — neuroscience — Posted on 2019-11-07

2858 Optimising network modelling methods for fMRI

Pervaiz, U.; Vidaurre, D.; Woolrich, M. W.; Smith, S. M.

10.1101/741595 — neuroscience — Posted on 2019-11-07

2859 Pharmacological inhibition of lysine-specific demethylase 1 (LSD1) induces global transcriptional deregulation and ultrastructural alterations that impair viability in Schistosoma mansoni

Coutinho Carneiro, V.; de Abreu da Silva, I. C.; Amaral, M. S.; Pereira, A. S.; Silveira, G. O.; Pires, D. S.; Verjovski-Almeida, S.; Dekker, F. J.; Rotili, D.; Mai, A.; Torres, E. J.; Robaa, D.; Sippl, W.; Pierce, R. J.; Borrello, M. T.; Ganesan, A.; Lancelot, J.; Thiengo, S.; Fernandez, M. A.; Vicentino, A. R.; Mourao, M. M.; Coelho, F. S.; Fantappie, M. R.

10.1101/829549 — molecular biology — Posted on 2019-11-07

2860 Human NK cell deficiency as a result of biallelic mutations in MCM10

Mace, E.; Paust, S.; Conte, M. I.; Baxley, R. M.; Schmit, M.; Guilz, N. C.; Mukherjee, M.; Pezzi, A. E.; Chmielowiec, J.; Tatineni, S.; Chinn, I. K.; Akdemir, Z. C.; Jhangiani, S. N.; Muzny, D. M.; Stray-Pedersen, A.; Bradley, R. E.; Moody, M.; Connor, P. P.; Heaps, A. G.; Steward, C.; Banerjee, P. P.; Gibbs, R. A.; Borowiak, M.; Lupski, J. R.; Jolles, S. R.; Bielinsky, A.; Orange, J.

10.1101/825554 — immunology — Posted on 2019-11-07

2861 TENSCell: A 3D-Printed Device for High-Magnification Imaging of Stretch-Activated Cells Reveals Divergent Nuclear Behavior to Different Levels of Strain

Seelbinder, B.; Scott, A.; Nelson, I.; Schneider, S. E.; Calahan, K.; Neu, C.

10.1101/742130 — cell biology — Posted on 2019-11-07

2862 Modeling adaptive therapy in non-muscle invasive bladder cancer

Ferrall-Fairbanks, M. C.; Kimmel, G. J.; Black, M.; Bravo, R.; Deac, O.; Martinez, P.; Myers, M.; Nazari, F.; Osojnik, A.; Subramanian, H.; Viossat, Y.; Whiting, F.; Li, R.; Mann, K. M.; Altrock, P. M.

10.1101/826438 — cancer biology — Posted on 2019-11-07

2863 Diffuse retro-reflective imaging for improved video tracking of mosquitoes at human baited bednets

Voloshin, V.; Kröner, C.; Seniya, C.; Murray, G. P. D.; Guy, A.; Towers, C. E.; McCall, P. J.; Towers, D. P.

10.1101/691949 — animal behavior and cognition — Posted on 2019-11-07

2864 Genome-wide DNA methylation analysis of heavy cannabis exposure in a New Zealand longitudinal cohort

Osborne, A. J.; Pearson, J. F.; Noble, A. J.; Gemmell, N. J.; Horwood, L. J.; Boden, J. M.; Benton, M.; Macartney-Coxson, D. P.; Kennedy, M. A.

10.1101/829598 — genomics — Posted on 2019-11-07

2865 Maternally-transferred thyroid hormones and life-history variation in birds

Hsu, B.-Y.; Pakanen, V.-M.; Boner, W.; Eeva, T.; Doligez, B.; Groothuis, T. G. G.; Korpimäki, E.; Laaksonen, T.; Lelono, A.; Monaghan, P.; Sarraude, T.; Tschirren, B.; Thomson, R. L.; Tolvanen, J.; Vasquez, R. A.; Ruuskanen, S.

10.1101/775981 — evolutionary biology — Posted on 2019-11-07

2866 Comparative evaluation of bolus and fractionated administration modalities for two antibody-cytokine fusions in immunocompetent tumor-bearing mice

Puca, E.; De Luca, R.; Seehusen, F.; Rodriguez, J. M. M.; Neri, D.

10.1101/712158 — pharmacology and toxicology — Posted on 2019-11-07

2867 The natverse: a versatile computational toolbox to combine and analyse neuroanatomical data

Bates, A. S.; Manton, J. D.; Jagannathan, S. R.; Costa, M.; Schlegel, P.; Rohlfing, T.; Jefferis, G. S. X. E.

10.1101/006353 — neuroscience — Posted on 2019-11-07

2868 Cellular polarity asymmetrically functionalizes pathogen recognition receptor-mediated intrinsic immune response in human intestinal epithelium cells

Stanifer, M.; Muenchau, S.; Pervolaraki, K.; Kanaya, T.; Mukenhirn, M.; Albrecht, D.; Odendall, C.; Kagan, J.; Bartfeld, S.; Ohno, H.; Boulant, S.

10.1101/450668 — immunology — Posted on 2019-11-07

2869 Landscape-scale forest loss as a catalyst of population and biodiversity change

Daskalova, G. N.; Myers-Smith, I. H.; Bjorkman, A. D.; Blowes, S. A.; Supp, S. R.; Magurran, A.; Dornelas, M.

10.1101/473645 — ecology — Posted on 2019-11-07

2870 Functional heterogeneity of lymphocytic patterns in primary melanoma dissected through single-cell multiplexing.

Bosisio, F. M.; Antoranz, A.; Bolognesi, M. M.; Marcelis, L.; Chinello, C.; Wouters, J.; Magni, F.; Alexopoulos, L.; Cattoretti, G.; van den Oord, J.; Van Herck, Y.; Bechter, O.; Stas, M.; Boecxstaens, V.

10.1101/409011 — cancer biology — Posted on 2019-11-07

2871 Prediction of Hand Movement Speed and Force from Single-trial EEG with Convolutional Neural Networks

Gatti, R. H.; Atum, Y. V.; Schiaffino, L.; Jochumsen, M.; Biurrun Manresa, J. A.

10.1101/492660 — bioengineering — Posted on 2019-11-07

2872 Development of SSR markers related to seed storability traits in maize subjected to artificial seed aging conditions

Guo, X.; Gong, C.; Liu, S.; Feng, C.; Han, X.; Lv, T.; Sun, X.; Yang, X.; Zhou, Y.; Wang, Z.; Di, H.

10.1101/833111 — plant biology — Posted on 2019-11-06

2873 Brief report: Mutations in SIV Nef that disrupt and restore tetherin downregulation

Maness, N. J.; Schouest, B.

10.1101/833137 — immunology — Posted on 2019-11-06

2874 Predictive whisker kinematics reveal context-dependent sensorimotor strategies

Wallach, A.; Deutsch, D.; Oram, T.; Ahissar, E.

10.1101/833103 — neuroscience — Posted on 2019-11-06

2875 Efficacy of Lumefantrine against piperaquine resistant Plasmodium berghei parasites is selectively restored by probenecid, verapamil, and cyproheptadine through ferredoxin NADP+-reductase and cysteine desulfurase

Bara, F. D.; Ndungu, L.; Onchieku, N. M.; Irungu, B.; Karou, S. D.; Kimani, F.; Matoke-Muhia, D.; Mwitari, P.; Magoma, G.; Nzila, A.; Kiboi, D.

10.1101/833145 — genomics — Posted on 2019-11-06

2876 JMJD6 participates in the maintenance of ribosomal DNA integrity in response to DNA damage

Fages, J.; Chailleux, C.; Humbert, J.; Jang, S.-M.; Loehr, J.; Lambert, J.-P.; Jacques, C.; Trouche, D.; canitrot, y.

10.1101/833129 — cell biology — Posted on 2019-11-06

2877 Assessing white matter pathway reproducibility from human whole-brain tractography clustering

Kai, J.; Khan, A.

10.1101/833095 — bioinformatics — Posted on 2019-11-06

2878 The Academic Career Readiness Assessment: Clarifying training expectations for future life sciences faculty

Clement, L.; Dorman, J. B.; McGee, R.

10.1101/829200 — scientific communication and education — Posted on 2019-11-06

2879 Valuing Carbon Stocks across a Tropical Lagoon after Accounting for Black and Inorganic Carbon: Bulk Density Proxies for monitoring

Gallagher, J. B. B.; Chew, S. T.; Madin, J.; Thorhaug, A.

10.1101/824490 — plant biology — Posted on 2019-11-06

2880 Regulation of electron transport is essential for photosystem I stability and plant growth

Storti, M.; Segalla, A.; Mellon, M.; Alboresi, A.; Morosinotto, T.

10.1101/832154 — plant biology — Posted on 2019-11-06

2881 Blocks in tricarboxylic acid cycle of Salmonella enterica cause global perturbation of carbon storage, motility and host-pathogen-interaction

Noster, J.; Hansmeier, N.; Persicke, M.; Chao, T.-C.; Kurre, R.; Popp, J.; Liss, V.; Reuter, T.; Hensel, M.

10.1101/832675 — microbiology — Posted on 2019-11-06

2882 Switching metalloporphyrin binding specificity of a b-type cytochrome to fluorogenic zinc by design

Bowen, B. J.; McGarrity, A. R.; Szeto, A.; Pudney, C.; Jones, D.

10.1101/832923 — biochemistry — Posted on 2019-11-06

2883 Dppa2/4 target chromatin bivalency enabling multi-lineage commitment

Eckersley-Maslin, M. A.; Parry, A. J.; Blotenburg, M.; Krueger, C.; Franklin, V. N. R.; Clark, S.; D'Santos, C. S.; Reik, W.

10.1101/832873 — molecular biology — Posted on 2019-11-06

2884 Species delimitation in the grey zone: introgression obfuscates phylogenetic inference and species boundaries in a cryptic frog complex (Ranidae: Pulchrana picturata)

Chan, K. O.; Hutter, C.; Wood, P. L.; Grismer, L.; Brown, R.

10.1101/832683 — evolutionary biology — Posted on 2019-11-06

2885 Selective over-synthesis and rapid turnover of mitochondrial protein components of respiratory complexes

Bogenhagen, D. F.

10.1101/832287 — molecular biology — Posted on 2019-11-06

2886 Systemic inflammation suppresses lymphoid tissue remodelling and B cell immunity during concomitant local infection

Alexandre, Y. O.; Devi, S.; Park, S. L.; Mackay, L. K.; Heath, W. R.; Mueller, S. N.

10.1101/831081 — immunology — Posted on 2019-11-06

2887 CB2 distinguishes cells from background barcodes in 10x Genomics data

Ni, Z.; Chen, S.; Brown, J.; Kendziorski, C.

10.1101/832535 — genomics — Posted on 2019-11-06

2888 Phylogenetic relationships in the southern African genus Drosanthemum (Ruschioideae, Aizoaceae)

Liede-Schumann, S.; Grimm, G. W.; Nuerk, N. M.; Potts, A. J.; Meve, U.; Hartmann, H. E.

10.1101/824623 — evolutionary biology — Posted on 2019-11-06

2889 A RUNX3 enhancer polymorphism associated with ankylosing spondylitis influences recruitment of Interferon Regulatory Factor 5 and factors of the Nucleosome Remodelling Deacetylase Complex in CD8+ T-cells

Vecellio, M.; Cortes, A.; Bonham, S.; Selmi, C.; Knight, J. C.; Fischer, R.; Brown, M. A.; Wordsworth, B. P.; Cohen, C. J.

10.1101/832840 — genetics — Posted on 2019-11-06

2890 Computational Approach for Screening the Whole Proteome of Hantavirus and Designing a Multi-Epitope Subunit Vaccine

Abdulla, F.; Nain, Z.; Hossain, M. M.; Sayed, S. B.; Khan, M. S. A.; Adhikari, U. K.

10.1101/832980 — bioinformatics — Posted on 2019-11-06

2891 A Multimodal and Integrated Approach to Interrogate Human Kidney Biopsies with Rigor and Reproducibility: The Kidney Precision Medicine Project

El-Achkar, T. M.; Eadon, M. T.; Menon, R.; Lake, B. B.; Sigdel, T. K.; Alexandrov, T.; Parikh, S.; Zhang, G.; Dobi, D.; Dunn, K. W.; Otto, E. A.; Anderton, C. R.; Carson, J. M.; Luo, J.; Park, C.; Hamidi, H.; Zhou, J.; Hoover, P.; Schroeder, A.; Joanes, M.; Azeloglu, E.; Sealfon, R.; Winfree, S.; Steck, B.; He, Y.; D'Agati, V. D.; Iyengar, R.; Troyanskaya, O. G.; Barisoni, L.; Gaut, J.; Zhang, K.; Laszik, Z.; Rovin, B.; Dagher, P. C.; Sharma, K.; Sarwal, M.; Hodgin, J. B.; Alpers, C. E.; Kretzler, M.; Jain, S.; For the Kidney Precision Medicine Project,

10.1101/828665 — scientific communication and education — Posted on 2019-11-06

2892 Changes in spinal cord hemodynamic reflect modulation of spinal network with different parameters of epidural stimulation

Tang, S.; Cuellar, C.; Song, P.; Islam, R.; Huang, C.; Wen, H.; Knudsen, B. E.; Gong, P.; Lok, U.-W.; Chen, S.; Lavrov, I.

10.1101/833202 — neuroscience — Posted on 2019-11-06

2893 Immune cell-specific Cre reporter mouse labels a subset of CNS neurons

Bouteau, A.; Igyarto, B.

10.1101/833194 — neuroscience — Posted on 2019-11-06

2894 The natural compound Notopterol targets JAK2/3 to ameliorate macrophage-induced inflammation and arthritis

Wang, H.; Wang, Q.; Zhou, X.; Yang, L.; Zhao, Y.; Xiao, J.; Shi, Q.; Liang, q.; Wang, Y.

10.1101/832782 — immunology — Posted on 2019-11-06

2895 PhenomeXcan: Mapping the genome to the phenome through the transcriptome

Pividori, M.; Rajagopal, P. S.; Barbeira, A. N.; Liang, Y.; Melia, O.; Bastarache, L.; Park, Y.; The GTEx Consortium, ; Wen, X.; Im, H. K.

10.1101/833210 — genetics — Posted on 2019-11-06

2896 MoBPS - Modular Breeding Program Simulator

Pook, T.; Schlather, M.; Simianer, H.

10.1101/829333 — genetics — Posted on 2019-11-06

2897 Modeling adaptive therapy in non-muscle invasive bladder cancer

10.1101/826438 — cancer biology — Posted on 2019-11-06

2898 Human URAT1/SLC22A12 gene promoter is regulated by 27-hydroxycholesterol through estrogen response elements

Matsubayashi, M.; Sakaguchi, Y. M.; Sahara, Y.; Nanaura, H.; Kikuchi, S.; Ashari, A.; Bui, L.; Kobashigawa, S.; Nakanishi, M.; Nagata, R.; Matsui, T. K.; Kashino, G.; Hasegawa, M.; Takasawa, S.; Eriguchi, M.; Tsuruya, K.; Nagamori, S.; Sugie, K.; Nakagawa, T.; Takasato, M.; Umetani, M.; Mori, E.

10.1101/827709 — biochemistry — Posted on 2019-11-06

2899 Development and validation of a deep learning framework for Alzheimers disease classification

Kolachalama, V. B.; Qiu, S.; Joshi, P. S.; Miller, M. I.; Xue, C.; Karjadi, C.; Chang, G. H.; Joshi, A. S.; Dwyer, B.; Zhu, S.; Kaku, M.; Zhou, Y.; Alderazi, Y. J.; Swaminathan, A.; Kedar, S.; Saint-Hilaire, M.-H.; Auerbach, S. H.; Yuan, J.; Sartor, E. A.; Au, R.

10.1101/832519 — neuroscience — Posted on 2019-11-06

2900 Spatial encoding in the visual pathway arises in cortex and depends on active navigation

Diamanti, E. M.; Schroeder, S.; Bai Reddy, C.; Harris, K. D.; Carandini, M.

10.1101/832915 — neuroscience — Posted on 2019-11-06

2901 Downregulation of GPR183 on Infection Restricts the Early Infection and Intracellular Survival of Mycobacterium tuberculosis in Macrophage

Tang, J.; Shi, Y.; Zhan, L.; Qin, C.

10.1101/832592 — microbiology — Posted on 2019-11-06

2902 Ribosome-targeting antibiotics impair T cell effector function and ameliorate autoimmunity by blocking mitochondrial protein synthesis

Almeida, L.; Dhillon-LaBrooy, A.; Castro, C.; Ayele, N.; Barthel, J.; Carriche, G. M.; Guderian, M.; Lippens, S.; Dennerlein, S.; Hesse, C.; Lambrecht, B.; Schauser, L.; Blazar, B. R.; Kalesse, M.; Mueller, R.; Moita, L.; Sparwasser, T.

10.1101/832956 — immunology — Posted on 2019-11-06

2903 Stathmin-2 Mediates Glucagon Secretion from Pancreatic α-Cells

Asadi, F.; Dhanvantari, S.

10.1101/832493 — cell biology — Posted on 2019-11-06

2904 Effects of genetic variability of CYP2D6 on neural substrates of sustained attention during on-task activity

Viviani, R.; Messina, I.; Bosch, J. E.; Dommes, L.; Paul, A.; Schneider, K. L.; Scholl, C.; Stingl, J. C.

10.1101/831198 — pharmacology and toxicology — Posted on 2019-11-06

2905 Systematic bias assessment in solid tissue 10x scRNA-seq workflows

Denisenko, E.; Guo, B. B.; Jones, M.; Hou, R.; de Kock, L.; Lassmann, T.; Poppe, D.; Clement, O.; Simmons, R. K.; Lister, R.; Forrest, A. R. R.

10.1101/832444 — genomics — Posted on 2019-11-06

2906 Expressing of Cytochrome-c, ADAM 17, Wnt-5a, and Hedgehog gene during the tissue regeneration of digit tip mice (Mus musculus) var Swiss Webster post amputation

Wahyuni, F. D.; Novianti, T.; Jamilah, I.; Ilyas, S.

10.1101/833491 — developmental biology — Posted on 2019-11-06

2907 PCK1 and DHODH drive colorectal cancer liver metastatic colonization and hypoxic pyrimidine nucleotide anabolic biosynthesis

Yamaguchi, N.; Weinberg, E.; Nguyen, A.; Liberti, M. V.; Goodarzi, H.; Janjigian, Y. Y.; Paty, P. B.; Saltz, L. B.; Kingham, T. P.; Loo, J. M.; Stanchina, E. d.; Tavazoie, S. F.

10.1101/833186 — cancer biology — Posted on 2019-11-06

2908 TP63, SOX2 and KLF5 Establish Core Regulatory Circuitry and Construct Cancer Specific Epigenome in Esophageal Squamous Cell Carcinoma

Jiang, Y.; Jiang, Y.; Li, C.-Q.; Ying, Z.; Dakle, P.; Deng, J.-W.; Lin, R. Y.-T.; Kaur, H.; Han, L.; Xie, J.-J.; Mayakonda, A.; Hazawa, M.; Xu, L.; Li, Y.; Aswad, L.; Jeitany, M.; Kanojia, D.; Guan, X.-Y.; Fullwood, M. J.; Lin, D.-C.; Koeffler, H. P.

10.1101/825372 — cancer biology — Posted on 2019-11-06

2909 GeneSwitches: Ordering gene-expression and functional events in single-cell experiments

Cao, Y. E.; Ouyang, J. F.; Rackham, O. J.

10.1101/832626 — bioinformatics — Posted on 2019-11-06

2910 Tandem electrospinning for heterogeneous nanofiber patterns

Wieringa, P.; Truckenmuerller, R.; Micera, S.; van Wezel, R.; Moroni, L.

10.1101/830950 — bioengineering — Posted on 2019-11-06

2911 Adaptations to Oral and Pharyngeal Swallowing Function Induced by Injury to the Mylohyoid Muscle

King, S. N.; Fletcher, B.; Kimbel, B.; Bonomo, N.; Pitts, T.

10.1101/832147 — animal behavior and cognition — Posted on 2019-11-06

2912 Arabidopsis RNA Polymerase IV generates 21-22 nucleotide small RNAs that can participate in RNA-directed DNA methylation and may regulate genes

Panda, K.; McCue, A. D.; Slotkin, R. K.

10.1101/832634 — plant biology — Posted on 2019-11-06

2913 The Chloroplast RNA binding protein CP31A shows cold-dependent RNA association and mediates cold-resistance via its acidic domain

Okuzaki, A.; Lehniger, M.-K.; Muino, J.; Lenzen, B.; Ruehle, T.; Leister, D.; Ohler, U.; Schmitz-Linneweber, C.

10.1101/832337 — plant biology — Posted on 2019-11-06

2914 Initiation and regulation of vascular tissue identity in the Arabidopsis embryo

Smit, M.; Llavata-Peris, C.; Roosjen, M.; van Beijnum, H.; Novikova, D.; Levitsky, V.; Slane, D.; Jurgens, G.; Mironova, V.; Brady, S.; Weijers, D.

10.1101/832501 — plant biology — Posted on 2019-11-06

2915 Cavefish brain atlases reveal functional and anatomical convergence across independently evolved populations

Jaggard, J. B.; Lloyd, E.; Yuiska, A.; Patch, A.; Fily, Y.; Kowalko, J. E.; Appelbaum, L.; Duboue, E. R.; Keene, A. C.

10.1101/832543 — neuroscience — Posted on 2019-11-06

2916 Primed acquisition and microhomology-mediated end-joining cooperate to confer specific CRISPR immunity against invasive genetic elements

Wang, X.; Wu, B.; Zhang, Z.; Liu, T.; Li, Y.; Hu, G.; He, M.; Peng, N.

10.1101/831206 — genetics — Posted on 2019-11-06

2917 Background radiation impacts human longevity and cancer mortality: Reconsidering the linear no-threshold paradigm

David, E.; Wolfson, M.; Fraifeld, V. E.

10.1101/832949 — cancer biology — Posted on 2019-11-06

2918 The diet and feeding behaviour of the black-and-white colobus (Colobus guereza) in the Kalinzu Forest, Uganda

Matsuda, I.; Ihobe, H.; Tashiro, Y.; Yumoto, T.; Baranga, D.; Hashimoto, C.

10.1101/832451 — ecology — Posted on 2019-11-06

2919 bioRxiv: the preprint server for biology

Sever, R.; Roeder, T.; Hindle, S.; Sussman, L.; Black, K.-J.; Argentine, J.; Manos, W.; Inglis, J. R.

10.1101/833400 — scientific communication and education — Posted on 2019-11-06

2920 Induced pluripotent stem cell-derived primary proprioceptive neurons as Friedreich ataxia cell model

Dionisi, C.; Rai, M.; Chazalon, M.; Schiffmann, S.; Pandolfo, M.

10.1101/829358 — neuroscience — Posted on 2019-11-06

2921 Pick-ya actin: A method to purify actin isoforms with bespoke key post-translational modifications

Hatano, T.; Sivashanmugam, L.; Suchenko, A.; Hussain, H.; Balasubramanian, M.

10.1101/833152 — cell biology — Posted on 2019-11-06

2922 The Dynamic Shift Detector: an algorithm to identify changes in parameter values governing populations

Bahlai, C. A.; Zipkin, E. F.

10.1101/522631 — ecology — Posted on 2019-11-06

2923 Destabilizing evolutionary and eco-evolutionary feedbacks drive empirical eco-evolutionary cycles

Cortez, M.; Patel, S.; Schreiber, S.

10.1101/488759 — ecology — Posted on 2019-11-06

2924 Comparative analysis of chemically and biologically synthesized iron oxide nanoparticles against Leishmania tropica

ul Ain, Q. A.

10.1101/829408 — plant biology — Posted on 2019-11-06

2925 Forest loss as a catalyst of population and biodiversity change

Daskalova, G. N.; Myers-Smith, I. H.; Bjorkman, A. D.; Blowes, S. A.; Supp, S. R.; Magurran, A.; Dornelas, M.

10.1101/473645 — ecology — Posted on 2019-11-06

2926 Brain networks processing temporal information in dynamic facial expressions

Skiba, R. M.; Vuilleumier, P.

10.1101/819276 — neuroscience — Posted on 2019-11-06

2927 Resolving cellular systems by ultra-sensitive and economical single-cell transcriptome filtering

Vallejo, A. F.; Davies, J.; Grover, A.; Tsai, c.-h.; Jepras, R.; Polak, M. E.; West, J. E.

10.1101/800631 — molecular biology — Posted on 2019-11-06

2928 eMED-DNA: An in silico operating system for clinical medical data storage within the human genome

Jakaria, M.; Sarker, K.; Uddin, M. R.; Islam, M. M.; Das, T.; Shakur, R.; Bayzid, M. S.

10.1101/814830 — bioinformatics — Posted on 2019-11-06

2929 A way around the exploration-exploitation dilemma

Peterson, E. J.; Verstynen, T. V.

10.1101/671362 — animal behavior and cognition — Posted on 2019-11-06

2930 Spatial and feature-selective attention have distinct effects on population-level tuning.

Goddard, E.; Carlson, T. A.; Woolgar, A.

10.1101/530352 — neuroscience — Posted on 2019-11-06

2931 Socio-behavioural characteristics and HIV: findings from a graphical modelling analysis of 29 sub-Saharan African countries

Baranczuk, Z.; Estill, J.; Blough, S.; Meier, S.; Merzouki, A.; Maathuis, M. H.; Keiser, O.

10.1101/600510 — epidemiology — Posted on 2019-11-06

2932 Squamous trans-differentiation of pancreatic cancer cells promotes stromal inflammation

Somerville, T.; Biffi, G.; Dassler-Plenker, J.; Miyabayashi, K.; Xu, Y.; Maia-Silva, D.; Klingbeil, O.; Demerdash, O.; Egeblad, M.; Tuveson, D.; Vakoc, C.

10.1101/833046 — cancer biology — Posted on 2019-11-06

2933 The expression of YAP1 is increased in high-grade prostatic adenocarcinoma but is reduced in neuroendocrine prostate cancer

Cheng, S.; Prieto-Dominguez, N.; Yang, S.; Connelly, Z.; StPierre, S.; Rushing, B.; Watkins, A.; Shi, L.; Lakey, M.; Baiamonte, L.; Fazili, T.; Lurie, A.; Corey, E.; Shi, R.; Yeh, Y.; Yu, X.

10.1101/832360 — cancer biology — Posted on 2019-11-06

2934 Assembling a phosphoproteomic knowledge base using ProtMapper to normalize phosphosite information from databases and text mining

Bachman, J. A.; Gyori, B. M.; Sorger, P. K.

10.1101/822668 — bioinformatics — Posted on 2019-11-06

2935 Segment2P: Parameter-free automated segmentation of cellular fluorescent signals

Dolev, N.; Pinkus, L.; Rivlin-Etzion, M.

10.1101/832188 — neuroscience — Posted on 2019-11-06

2936 Attenuated directed exploration during reinforcement learning in gambling disorder

Wiehler, A.; Chakroun, K.; Peters, J.

10.1101/823583 — neuroscience — Posted on 2019-11-06

2937 Genomic Background Governs Opposing Responses to Nalidixic Acid Upon Megaplasmid Acquisition in Pseudomonas

Baltrus, D. A.; Smith, C.; Derrick, M.; Leligdon, C.; Rosenthal, Z.; Mollico, M.; Moore, A.; Clark, M.

10.1101/832428 — microbiology — Posted on 2019-11-06

2938 Synergistic-cidal effect of amoxicillin conjugated silver nanoparticles against Escherichia coli

Arivarasan, V. K.; Loganthan, K.; Jayachandran, V.; Chaskar, A. C.

10.1101/832568 — microbiology — Posted on 2019-11-06

2939 Uncovering the microbiome of invasive sympatric European brown hares and European rabbits in Australia

Shanmuganandam, S.; Hu, Y.; Strive, T.; Schwessinger, B.; Hall, R.

10.1101/832477 — ecology — Posted on 2019-11-06

2940 Transcriptional reprogramming in fused cells is triggered by plasma-membrane diminution

Feliciano, D.; Espinosa-Medina, I.; Weigel, A.; Milano, K. M.; Tang, Z.; Lee, T.; Kliman, H. J.; Guller, S. M.; Ott, C. M.; Lippincott-Schwartz, J.

10.1101/832378 — cell biology — Posted on 2019-11-06

2941 The primary cilium dampens proliferative signaling and represses a G2/M transcriptional network in quiescent myoblasts

Venugopal, N.; Ghosh, A.; Gala, H.; Aloysius, A.; Vyas, N.; Dhawan, J.

10.1101/833061 — cell biology — Posted on 2019-11-06

2942 Alfalfa leaf curl virus is transmitted by Aphis craccivorain a highly specific circulative manner

Ryckebusch, F.; Sauvion, N.; Granier, M.; Roumagnac, P.; Peterschmitt, M.

10.1101/832204 — ecology — Posted on 2019-11-06

2943 Combination antibiotic delivery in PMMA provides sustained broad-spectrum antimicrobial activity and allows for post-implantation refilling

Cyphert, E. L.; Lu, C.-y.; Marques, D. W.; Learn, G. D.; von Recum, H. A.

10.1101/832402 — bioengineering — Posted on 2019-11-06

2944 Pseudohyphal growth of the emerging pathogen Candida auris is triggered by genotoxic stress through the S phase checkpoint

Bravo Ruiz, G.; Ross, Z. K.; Gow, N. A. R.; Lorenz, A.

10.1101/832931 — microbiology — Posted on 2019-11-06

2945 DRAMS: A Tool to Detect and Re-Align Mixed-up Samples for Integrative Studies of Multi-omics Data

Jiang, Y.; Giase, G.; Grennan, K.; Shieh, A. W.; Xia, Y.; Han, L.; Wang, Q.; Wei, Q.; Chen, R.; Liu, S.; White, K. P.; Chen, C.; Li, B.; Liu, C.

10.1101/831537 — bioinformatics — Posted on 2019-11-06

2946 Coevolution of male and female mate choice can destabilize reproductive isolation

Aubier, T. G.; Kokko, H.; Joron, M.

10.1101/246355 — evolutionary biology — Posted on 2019-11-06

2947 Classical and controlled auditory mismatch responses to multiple physical deviances in anaesthetised and conscious mice

O'Reilly, J. A.; Conway, B. A.

10.1101/831016 — neuroscience — Posted on 2019-11-06

2948 Distinct roles for motor cortical and thalamic inputs to striatum during motor learning and execution

Wolff, S. B. E.; Ko, R.; Ölveczky, B. P.

10.1101/825810 — neuroscience — Posted on 2019-11-06

2949 Probability of Change in Life: amino acid changes in single nucleotide substitutions

Chan, K. F.; Koukouravas, S.; Yeo, J. Y.; Koh, D. W. S.; Gan, S. K.

10.1101/729756 — molecular biology — Posted on 2019-11-06

2950 Characterisation of Quorum Sensing System and Its Role in Global Regulation in Hafnia alvei

Tan, J.-Y.; See-Too, W.-S.; Convey, P.; Chan, K.-G.

10.1101/812727 — genomics — Posted on 2019-11-06

2951 CCDC186 controls dense-core vesicle cargo sorting by exit

Cattin-Ortola, J.; Topalidou, I.; Lau, H.-T.; Hummer, B.; Asensio, C. S.; Ong, S.-E.; Ailion, M.

10.1101/616458 — cell biology — Posted on 2019-11-06

2952 Systematic Pan-Cancer Analysis Reveals the Functional Roles of Ferroptosis Across Cancers

Liu, Z.; Zhao, Q.; Zuo, Z.; Yuan, S.-Q.; Yu, K.; Zhang, Q.; Zhang, X.; Sheng, H.; Cheng, H.; Wang, F.; Xu, R.-H.; Liu, Z.-X.

10.1101/765826 — cancer biology — Posted on 2019-11-06

2953 Integrated single cell and bulk multi-omics reveals heterogeneity and early changes in pathways associated with cetuximab resistance in HNSCC sensitive cell lines

Kagohara, L. T.; Zamuner, F.; Considine, M.; Allen, J.; Yegnasubramanian, S.; Gaykalova, D. A.; Fertig, E. J.

10.1101/729384 — cancer biology — Posted on 2019-11-06

2954 Assembling a phosphoproteomic knowledge base using ProtMapper to normalize phosphosite information from databases and text mining

Bachman, J. A.; Gyori, B. M.; Sorger, P. K.

10.1101/822668 — bioinformatics — Posted on 2019-11-06

2955 Reference glycan structure libraries of primary human cardiomyocytes and pluripotent stem cell-derived cardiomyocytes reveal cell-type and culture stage-specific glycan phenotypes

Ashwood, C.; Waas, M.; Weerasekera, R.; Gundry, R. L.

10.1101/753707 — biochemistry — Posted on 2019-11-06

2956 Individual and concurrent effects of drought and chilling stresses on morpho-physiological characteristics and oxidative metabolism of maize cultivars

Hussain, H. A.; Shengnan, M.; Hussain, S.; Ashraf, U.; Zhang, Q.; Ahmad Anjum, S.; Ali, I.; Wang, L.

10.1101/829309 — plant biology — Posted on 2019-11-06

2957 Regeneration of dorsal spinal cord neurons after injury via in situ NeuroD1-mediated astrocyte-to-neuron conversion

Puls, B.; Ding, Y.; Zhang, F.; Pan, M.; Lei, Z.; Pei, Z.; Jiang, M.; Bai, Y.; Forsyth, C.; Metzger, M.; Rana, T.; Zhang, L.; Ding, X.; Keefe, M.; Cai, A.; Redilla, A.; Lai, M.; He, K.; Li, H.; Chen, G.

10.1101/818823 — neuroscience — Posted on 2019-11-06

2958 Neural representation of bat predation risk and evasive flight in moths: a modelling approach

Goerlitz, H. R.; ter Hofstede, H. M.; Holderied, M. W.

10.1101/818609 — neuroscience — Posted on 2019-11-06

2959 Staufen 1 amplifies pro-apoptotic activation of the unfolded protein response.

Gandelman, M.; Dansithong, W.; Figueroa, K. P.; Paul, S.; Scoles, D. R.; Pulst, S. M.

10.1101/820225 — neuroscience — Posted on 2019-11-06

2960 Learning to Select Actions Shapes Recurrent Dynamics in the Corticostriatal System

Marton, C. D.; Schultz, S.; Averbeck, B.

10.1101/646141 — neuroscience — Posted on 2019-11-06

2961 A de novo approach to inferring within-host fitness effects during untreated HIV-1 infection

Illingworth, C.; Raghwani, J.; Serwadda, D.; Sewankambo, N. K.; Robb, M.; Eller, M.; Redd, A.; Quinn, T.; Lythgoe, K.

10.1101/825117 — evolutionary biology — Posted on 2019-11-06

2962 EIPR1 controls dense-core vesicle cargo retention and EARP complex localization in insulinoma cells

Topalidou, I.; Cattin-Ortola, J.; Hummer, B.; Asensio, C. S.; Ailion, M.

10.1101/374488 — cell biology — Posted on 2019-11-06

2963 High Yield Monolayer Graphene Grids for Near-Atomic Resolution Cryo-Electron Microscopy

Han, Y.; Fan, X.; Wang, H.; Zhao, F.; Tully, C. G.; Kong, J.; Yao, N.; Yan, N.

10.1101/827089 — biophysics — Posted on 2019-11-06

2964 Identifying Sialylation Linkages at the Glycopeptide Level by Glycosyltransferase Labeling Assisted Mass Spectrometry (GLAMS)

Zhu, H.; Wang, S.; Liu, D.; Ding, L.; Chen, C.; Liu, Y.; Wu, Z.; Bollag, R.; Liu, K.; Yin, J.; Ma, C.; Li, L.; Wang, P. G.

10.1101/811554 — biochemistry — Posted on 2019-11-06

2965 Low Carbohydrate and Low Fat Diets with Equal Protein Content Lead to Similar Improvements in Body Composition and Glucose Tolerance in Obese Mice subjected to Caloric Restriction

Minderis, P.; Fokin, A.; Dirmontas, M.; Ratkevicius, A.

10.1101/830752 — physiology — Posted on 2019-11-06

2966 Localized semi-nonnegative matrix factorization (LocaNMF) of widefield calcium imaging data

Saxena, S.; Kinsella, I.; Musall, S.; Kim, S. H.; Meszaros, J.; Thibodeaux, D. N.; Kim, C.; Cunningham, J.; Hillman, E.; Churchland, A.; Paninski, L.

10.1101/650093 — neuroscience — Posted on 2019-11-06

2967 From drift to draft: How much do beneficial mutations actually contribute to predictions of Ohta’s slightly deleterious model of molecular evolution?

Chen, J.; Glemin, S.; Lascoux, M.

10.1101/681866 — evolutionary biology — Posted on 2019-11-06

2968 Regenerative capacity in Drosophila imaginal discs is controlled by damage-responsive, maturity-silenced enhancers

Harris, R. E.; Stinchfield, M. J.; Nystrom, S. L.; McKay, D. J.; Hariharan, I. K.

10.1101/820605 — developmental biology — Posted on 2019-11-06

2969 SuperCRUNCH: A toolkit for creating and manipulating supermatrices and other large phylogenetic datasets

Portik, D.; Wiens, J.

10.1101/538728 — bioinformatics — Posted on 2019-11-06

2970 BAGSE: a Bayesian hierarchical model approach for gene set enrichment analysis

Hukku, A.; Quick, C.; Luca, F.; Pique-Regi, R.; Wen, X.

10.1101/662171 — bioinformatics — Posted on 2019-11-06

2971 A cross-species assessment of behavioral flexibility in compulsive disorders

Benzina, N.; N'Diaye, K.; Pelissolo, A.; Mallet, L.; Burguiere, E.

10.1101/542100 — neuroscience — Posted on 2019-11-06

2972 Shortened TDP43 isoforms upregulated by neuronal hyperactivity drive TDP43 pathology in ALS

Weskamp, K.; Tank, E. M.; Miguez, R.; McBride, J. P.; Gomez, N. B.; White, M.; Lin, Z.; Moreno Gonzalez, C.; Serio, A.; Sreedharan, J.; Barmada, S. J.

10.1101/648477 — neuroscience — Posted on 2019-11-06

2973 Charting extracellular transcriptomes in The Human Biofluid RNA Atlas

Hulstaert, E.; Morlion, A.; Avila Cobos, F.; Verniers, K.; Nuytens, J.; Vanden Eynde, E.; Yigit, N.; Anckaert, J.; Geerts, A.; Hindryckx, P.; Jacques, P.; Brusselle, G.; Bracke, K. R.; Maes, T.; Malfait, T.; Derveaux, T.; Ninclaus, V.; Van Cauwenbergh, C.; Roelens, K.; Roets, E.; Hemelsoet, D.; Tilleman, K.; Brochez, L.; Kuersten, S.; Simon, L.; Karg, S.; Kautzky-Willers, A.; Leutner, M.; Nöhammer, C.; Slaby, O.; Schroth, G. P.; Vandesompele, J.; Mestdagh, P.

10.1101/823369 — genomics — Posted on 2019-11-05

2974 Harnessing Digital Health to Objectively Assess Cognitive Impairment in People undergoing Hemodialysis Process: The Impact of Cognitive Impairment on Mobility Performance Measured by Wearables

Zhou, H.; Al-Ali, F.; Wang, C.; Hamad, A.; Ibrahim, R.; Talal, T.; Najafi, B.

10.1101/831545 — neuroscience — Posted on 2019-11-05

2975 Space use and resource selection of bobcats in the Appalachian Mountains of western Virginia

McNitt, D.; Alonso, R. S.; Cherry, M. J.; Fies, M. L.; Kelly, M. J.

10.1101/831644 — ecology — Posted on 2019-11-05

2976 Control and simulation impact on nonlinear Hepatitis-B model by using Pade-approximation based Differential Evolution

Farman, M.; Farhan, M.; Saeed, M.; Ahamd, N.

10.1101/831636 — developmental biology — Posted on 2019-11-05

2977 Analysis of unusual and signature APOBEC-mutations in HIV-1 pol next-generation sequences

Tzou, P. L.; Kosakovsky Pond, S. L.; Avila-Rios, S.; Holmes, S. P.; Kantor, R.; Shafer, R. W.

10.1101/831685 — bioinformatics — Posted on 2019-11-05

2978 Immunoglobulin J chain as a non-invasive indicator of pregnancy in the cheetah (Acinonyx jubatus)

Byron, M. J.; Koester, D. C.; Edwards, K. L.; Mozdziak, P. E.; Farin, C. E.; Crosier, A. E.

10.1101/831628 — physiology — Posted on 2019-11-05

2979 Asymmetrical reliability of the Alda Score favours a dichotomous representation of lithium responsiveness

Nunes, A.; Trappenberg, T.; Alda, M.

10.1101/831651 — pharmacology and toxicology — Posted on 2019-11-05

2980 Not so automatic: Task relevance and perceptual load modulate cross-modal semantic congruence effects on spatial orienting

Kvasova, D.; Soto-Faraco, S.

10.1101/830679 — neuroscience — Posted on 2019-11-05

2981 DNA replication protein Cdc45 directly interacts with PCNA via its PIP box in Leishmania donovani and the Cdc45 PIP box is essential for cell survival

Yadav, A.; Sharma, V.; Pal, J.; Gulati, P.; Goel, M.; Chandra, U.; Bansal, N.; Saha, S.

10.1101/831669 — molecular biology — Posted on 2019-11-05

2982 The novel microRNAs hsa-miR-nov7 and hsa-miR-nov3 are over-expressed in locally advanced breast cancer

Poduval, D.; Sichmanova, Z.; Straume, A. H.; Lonning, P. E.; Knappskog, S.

10.1101/831560 — molecular biology — Posted on 2019-11-05

2983 MicroRNA-148a Regulates Low-Density Lipoprotein Metabolism by Repressing the (Pro)renin Receptor

Wang, N.; He, L.; Lin, H.; Tan, L.; Sun, Y.; Zhang, X.; Danser, A. H. J.; Lu, H. S.; He, Y.; Lu, X.

10.1101/831529 — molecular biology — Posted on 2019-11-05

2984 SPOP Promotes Ubiquitination and Degradation of MyD88 to Suppress the Innate Immune Response

Zhao, G.; Li, Q.; Wang, F.; Wang, Q.; Zheng, M.; Liu, R.; Cui, H.; Wen, J.

10.1101/831586 — immunology — Posted on 2019-11-05

2985 Primary cilia are present on endothelial cells of the hyaloid vasculature but are not required for the development of the blood-retinal barrier

Pollock, L. M.; Perkins, B.; Anand-Apte, B.

10.1101/831578 — cell biology — Posted on 2019-11-05

2986 Evaluating the effects of arousal and emotional valence on performance of racing greyhounds

Starling, M.; Spurrett, A.; McGreevy, P.

10.1101/831552 — animal behavior and cognition — Posted on 2019-11-05

2987 The human α-defensin-derived peptide HD5(1-9) inhibits cellular attachment and entry of human cytomegalovirus.

Böffert, R.; Businger, R.; Preiss, H.; Ehmann, D.; Truffault, V.; Simon, C.; Ruetalo, N.; Hamprecht, K.; Müller, P.; Wehkamp, J.; Schindler, M.

10.1101/831594 — microbiology — Posted on 2019-11-05

2988 Using software Vortex as a tool towards conservation actions for sharks

Barcellos, L.; Escarlate-Tavares, F.

10.1101/831677 — ecology — Posted on 2019-11-05

2989 RNA recognition by the E2 subunit of the chloroplast pyruvate dehydrogenase from Chlamydomonas

Neusius, D.; Kleinknecht, L.; Bohne, A.-V.; Nickelsen, J.

10.1101/831339 — plant biology — Posted on 2019-11-05

2990 Vacuolar processing enzyme translocates to the vacuole through the autophagy pathway to induce programmed cell death

Eshel, D.; Teper-Bamnolker, P.; Danieli, R.; Peled-Zehavi, H.; Belausov, E.; Abu-Abied, M.; Avin-Wittenberg, T.; Sadot, E.

10.1101/831982 — plant biology — Posted on 2019-11-05

2991 Mutations in Auxilin cause parkinsonism via impaired clathrin-mediated trafficking at the Golgi apparatus and synapse

10.1101/830802 — neuroscience — Posted on 2019-11-05

2992 Using structural connectivity to augment community structure in EEG functional connectivity

Glomb, K.; Mullier, E.; Carboni, M.; Rubega, M.; Iannotti, G.; Tourbier, S.; Seeber, M.; Vulliemoz, S.; Hagmann, P.

10.1101/831743 — neuroscience — Posted on 2019-11-05

2993 Function of ex vivo stimulated Natural killer T cells from patients with chronic HIV-1 infection

Thapa, P.; Nehete, P.; He, H.; Nehete, B.; Buchl, S.; Bull, L.; Lu, H.; Arduino, R.; Sastry, K. J.; Zhou, D.

10.1101/831834 — immunology — Posted on 2019-11-05

2994 Natural cryptic epigenetic variation in an embryonic gene regulatory network

Ewe, C. K.; Torres Cleuren, Y. N.; Snell, R. G.; Rothman, J. H.

10.1101/831099 — genetics — Posted on 2019-11-05

2995 Nonequilibrium Theory of Epigenomic Microphase Separation in the Cell Nucleus

Michieletto, D.; Coli, D.; Marenduzzo, D.; Orlandini, E.

10.1101/831396 — biophysics — Posted on 2019-11-05

2996 Critical nodes reveal peculiar features of human essential genes and protein interactome

Celestini, A.; Cianfriglia, M.; Mastrostefano, E.; Palma, A.; Castiglione, F.; Tieri, P.

10.1101/831750 — bioinformatics — Posted on 2019-11-05

2997 Epigenetic bases of grafting-induced vigour in eggplant

Cerruti, E.; Gisbert, C.; Drost, H.-G.; Valentino, D.; Portis, E.; Barchi, L.; Prohens, J.; Lanteri, S.; Comino, C.; Catoni, M.

10.1101/831719 — plant biology — Posted on 2019-11-05

2998 Molecular identification of the Trypanosoma (Herpetosoma) lewisi clade in black rats (Rattus rattus) from Australia

Egan, S. L.; Taylor, C. L.; Austen, J. M.; Banks, P. B.; Ahlstrom, L. A.; Ryan, U. M.; Irwin, P. J.; Oskam, C. L.

10.1101/819060 — microbiology — Posted on 2019-11-05

2999 Human regulatory T cells at the maternal-fetal interface show functional site-specific adaptation with tumor-infiltrating-like features

Wienke, J.; Brouwers, L.; van der Burg, L. M.; Mokry, M.; Scholman, R. C.; Nikkels, P. G.; van Rijn, B. B.; van Wijk, F.

10.1101/820753 — immunology — Posted on 2019-11-05

3000 Exome Sequencing in Individuals with Isolated Biliary Atresia

Rajagoapalan, R.; Tsai, E. A.; Grochowski, C. M.; Kelly, S. M.; Loomes, K. M.; Spinner, N. B.; Devoto, M.

10.1101/831768 — genetics — Posted on 2019-11-05

3001 Temperature sensitive SMA-causing point mutations lead to SMN instability, locomotor defects, and premature lethality in Drosophila

Raimer, A. C.; Singh, S. S.; Edula, M.; Paris-Davila, T.; Vandadi, V.; Spring, A. M.; Matera, A. G.

10.1101/832030 — genetics — Posted on 2019-11-05

3002 Pseudouridine synthases in the RluA family negatively regulate Drosophila nociception.

Song, W.; Tracey, W. D.

10.1101/831917 — genetics — Posted on 2019-11-05

3003 Representations of the amacrine cell population underlying retinal motion anticipation

Menz, M. D.; Lee, D.; Baccus, S. A.

10.1101/830976 — neuroscience — Posted on 2019-11-05

3004 Early life stress decreases the proliferation and numbers of adult hypothalamic neural stem cells.

Bielefeld, P.; Abbink, M. R.; Davidson, A. R.; Lucassen, P. J.; Korosi, A.; Fitzsimons, C. P.

10.1101/831446 — neuroscience — Posted on 2019-11-05

3005 Antagonistic center-surround mechanisms for direction selectivity in the retina

Ankri, L.; Ezra-Tsur, E.; Maimon, S. R.; Kaushansky, N.; Rivlin-Etzion, M.

10.1101/831453 — neuroscience — Posted on 2019-11-05

3006 Sfrp1 deficiency makes retinal photoreceptors prone to degeneration

Di Marco, F.; Cisneros, E.; Rueda-Carrasco, J.; LILLO, C.; Martin-Bermejo, M. J.; Sandonis, A.; Esteve, P.; Bovolenta, P.

10.1101/831479 — neuroscience — Posted on 2019-11-05

3007 A novel experimental system reveals immunoregulatory responses as mediators of persistent orthohantavirus infections in a rodent reservoir host

Strandin, T.; Smura, T.; Ahola, P.; Aaltonen, K.; Sironen, T.; Hepojoki, J.; Eckerle, I.; Ulrich, R.; Vapalahti, O.; Kipar, A.; Forbes, K.

10.1101/831214 — microbiology — Posted on 2019-11-05

3008 Comparison of the Gut Microbiota Composition Between Captive and Wild Roe Deer

Liu, J. Y. J.; Liang, X.; Liu, Y.

10.1101/831222 — microbiology — Posted on 2019-11-05

3009 Long term development of a realistic and integrated socio-ecological system

Gaucherel, C.; Carpentier, C.; Geijzendorffer, I. R.; Pommereau, F.

10.1101/823294 — ecology — Posted on 2019-11-05

3010 Gain-of-function genetic screen of the kinome reveals BRSK2 as an inhibitor of the NRF2 transcription factor

Tamir, T. Y.; Bowman, B. M.; Agajanian, M. J.; Goldfarb, D.; Schrank, T. P.; Stohrer, T.; Hale, A. E.; Siesser, P. F.; Weir, S. J.; Murphy, R. M.; LaPak, K. M.; Weissman, B. E.; Moorman, N. J.; Major, M. B.

10.1101/832279 — cell biology — Posted on 2019-11-05

3011 Monitoring Dynamics of Large Membrane Proteins by 19F Paramagnetic Longitudinal Relaxation: Domain Movement in a Glutamate Transporter Homolog

Huang, Y.; Wang, X.; Lv, G.; Razavi, A. M.; Huysman, G. H. M.; Weinstein, H.; Bracken, C.; Eliezer, D.; Boudker, O.

10.1101/832121 — biophysics — Posted on 2019-11-05

3012 Causes and consequences of mitochondrial proteome size-variation in animals

Muthye, V. R.; Lavrov, D. V.

10.1101/829127 — bioinformatics — Posted on 2019-11-05

3013 Stochastic model for the CheY-P molarity in the neighbourhood of E. coli flagella motors

Fier, G.; Hansmann, D.; Buceta, R. C.

10.1101/831990 — biophysics — Posted on 2019-11-05

3014 ApoC-III overexpression and LDLr-/- protect mice from DSS-colitis: identifying a new role for lipoprotein metabolism in Tregs

Rodia, C. N.; Li, D.; Tambini, N. S.; Johnson, Z. K.; Jellison, E. R.; Vella, A. T.; Kohan, A. B.

10.1101/823690 — physiology — Posted on 2019-11-05

3015 Equilin does not affect thyroid hormone signaling in the developing Xenopus laevis tadpole brain

Bass, R. G.; Husain, Z.; Dahora, L. I.; Thompson, C.

10.1101/832071 — neuroscience — Posted on 2019-11-05

3016 A Diploid Assembly-based Benchmark for Variants in the Major Histocompatibility Complex

Chin, C.-S.; Wagner, J.; Zeng, Q.; Garrison, E.; Garg, S.; Fungtammasan, A.; Rautiainen, M.; Marschall, T.; Dilthey, A. T.; Zook, J. M.

10.1101/831792 — genomics — Posted on 2019-11-05

3017 High throughput, error corrected Nanopore single cell transcriptome sequencing

Lebrigand, K.; Magnone, V.; BARBRY, P.; Waldmann, R.

10.1101/831495 — genomics — Posted on 2019-11-05

3018 The adaptive potential of the M-domain of yeast Hsp90

Cote-Hammarlof, P. A.; Fragata, I.; Flynn, J.; Zeldovich, K. B.; Bank, C.; Bolon, D. N. A.

10.1101/832022 — evolutionary biology — Posted on 2019-11-05

3019 Hyperglycemia enhances cancer immune evasion by inducing alternative macrophage polarization through increased O-GlcNAcylation

Rodrigues Mantuano, N.; Stanczak, M. A.; de Araujo Oliveira, I.; Kirchhammer, N.; Filardy, A.; Monaco, G.; Santos, R. C.; Carlos Fonseca, A.; Fontes, M.; de Souza Bastos, C.; Dias, W. B.; Zippelius, A.; Todeschini, A. R.; Laubli, H.

10.1101/831610 — cancer biology — Posted on 2019-11-05

3020 Magnetic Polymer Models for Epigenetics-Driven Chromosome Folding

Coli, D.; Michieletto, D.; Marenduzzo, D.; Orlandini, E.

10.1101/831412 — biophysics — Posted on 2019-11-05

3021 Molecular Docking of Glycyrrhiza glabra against the Conserved Target M1, NA andNS1 Proteins of Influenza A Viral Strains Identified through Pangenome Analysis

S, A.; Shantha, E.; Devi, N.; Jansi, S.

10.1101/831461 — bioinformatics — Posted on 2019-11-05

3022 EXO70A2 is critical for the exocyst complex function in Arabidopsis pollen

Markovic, V.; Cvrckova, F.; Potocky, M.; Pejchar, P.; Kollarova, E.; Kulich, I.; Synek, L.; Zarsky, V.

10.1101/831875 — plant biology — Posted on 2019-11-05

3023 Towards a biotechnological platform for the production of human growth factors in the green alga Chlamydomonas reinhardtii

Jarquin Cordero, M.; Chavez, M. N.; Centeno Cerdas, C.; Bohne, A. V.; Hopfner, U.; Machens, H.-G.; Egana, J. T.; Nickelsen, J.

10.1101/831933 — plant biology — Posted on 2019-11-05

3024 Decreased alertness reconfigures cognitive control networks

Canales-Johnson, A.; Beerendonk, L.; Blain, S.; Kitaoka, S.; Ezquerro-Nassar, A.; Nuiten, S. A.; Fahrenfort, J. J.; van Gaal, S.; Bekinschtein, T. A.

10.1101/831727 — neuroscience — Posted on 2019-11-05

3025 Simple and low-cost amplifier system for the study of a ventral nerve action potential in earthworm

Jorquera, O.

10.1101/832055 — neuroscience — Posted on 2019-11-05

3026 Clonal reconstruction from time course genomic sequencing data

Mohammed Ismail, W.; Tang, H.

10.1101/832063 — genomics — Posted on 2019-11-05

3027 Genomic landscape of reproductive isolation in Lucania killifish: The role of sex chromosomes and salinity

Berdan, E.; Fuller, R. C.; Kozak, G. M.

10.1101/831867 — evolutionary biology — Posted on 2019-11-05

3028 On the impact of contaminants on the accuracy of genome skimming and the effectiveness of exclusion read filters

Rachtman, E.; Balaban, M.; Bafna, V.; Mirarab, S.

10.1101/831941 — bioinformatics — Posted on 2019-11-05

3029 Recovering rearranged cancer chromosomes from karyotype graphs

Aganezov, S.; Zban, I.; Aksenov, V.; Alexeev, N.; Schatz, M. C.

10.1101/831057 — bioinformatics — Posted on 2019-11-05

3030 Direct synthesis of self-organized blastocyst-like cysts derived from human pluripotent stem cells

Wen, X.; Terada, S.; Yoshimoto, K.; Kamei, K.-i.

10.1101/831487 — bioengineering — Posted on 2019-11-05

3031 Activity/rest rhythms of Drosophila populations selected for divergent eclosion timing under temperature cues

Abhilash, L.; Arshad, K.; Vasu, S.

10.1101/831347 — animal behavior and cognition — Posted on 2019-11-05

3032 Long-Term Aberrations To Cerebellar Endocannabinoids Induced By Early-Life Stress

Moussa-Tooks, A. B.; Larson, E.; Gimeno, A.; Leishman, E.; Bartolomeo, L.; Bradshaw, H.; Green, J. T.; O'Donnell, B. F.; Mackie, K.; Hetrick, W. P.

10.1101/830901 — neuroscience — Posted on 2019-11-05

3033 RNA-binding protein altered expression and mislocalization in multiple sclerosis

Masaki, K.; Sonobe, Y.; Ghadge, G.; Pytel, P.; Lepine, P.; Pernin, F.; Cui, Q.-L.; Antel, J. P.; Zandee, S.; Prat, A.; Roos, R. P.

10.1101/829457 — neuroscience — Posted on 2019-11-05

3034 Mechanosensory stimulation via Nanchung expressing neurons can induce daytime sleep in Drosophila

Lone, S. R.; Potdar, S.; Venkataraman, A.; Sharma, V. K.; Sheeba, V.

10.1101/829861 — neuroscience — Posted on 2019-11-05

3035 α-ketoglutaric acid stimulates muscle hypertrophy and fat loss through OXGR1-dependent adrenal activation

Shu, G.; Yuan, Y. X.; Xu, P. W.; Jiang, Q.-Y.; Cai, X. C.; Wang, T.; Peng, W.; Sun, J.; Zhu, C. J.; Zhang, C.; Yue, D.; He, Z.-h.; Yang, J. P.; Zeng, Y.; Du, M.; Zhang, F.; Ibrahimi, L.; Schaul, S.; Jiang, Y.; Wang, J.; Sun, J.; Wang, Q.-P.; Wang, S.; Wang, L.; Zhu, X.; Gao, P.; Xi, Q.; Yin, C.; Li, F.; Xu, G.; Zhang, Y. L.

10.1101/796037 — molecular biology — Posted on 2019-11-05

3036 A new FRET biosensor enlightens cAMP signalling in budding yeast

Botman, D.; O'Toole, T. G.; Goedhart, J.; Bruggeman, F.; van Heerden, J. H.; Teusink, B.

10.1101/831354 — microbiology — Posted on 2019-11-05

3037 Metastatic function of METTL18 in breast cancer via actin methylation and Src

Kim, H. G.; Kim, J. H.; Yang, W. S.; Park, J. G.; Lee, Y. G.; Kim, E.; Hong, Y. H.; Jo, M.; Lee, C. Y.; Kim, S. H.; Sung, N. Y.; Yi, Y.-S.; Ratan, Z. A.; Kim, S.; Yoo, B. C.; Kang, S.-U.; Kim, Y. B.; Kim, S.; Paik, H.-J.; Lee, J. E.; Nam, S. J.; Parameswaran, N.; Han, J.-W.; Cho, J. Y.

10.1101/831701 — cancer biology — Posted on 2019-11-05

3038 Meiosis and Kinetochore genes are used by cancer cells as genome destabilizers and transformation catalysts

Thapa, R.; Vasudevan, S.; Abo-Ayoub Ashqar, M.; Kravchenko-Balasha, N.; Klutstein, M.

10.1101/826081 — cancer biology — Posted on 2019-11-05

3039 PointSite: a point cloud segmentation tool for identication of protein ligand binding atoms

Li, Z.; Yan, X.; Wei, Q.; Gao, X.; Wang, S.; Cui, S.

10.1101/831131 — bioinformatics — Posted on 2019-11-05

3040 Turanose mediated WOX5 expression rescues symbiosis in cytokinin perception mutant cre1

DasGupta, M.; Kundu, A.; Molla, F.

10.1101/830661 — plant biology — Posted on 2019-11-05

3041 Cellular chaining influences biofilm formation and structure in Group A Streptococcus

Matysik, A.; Ho, F. K.; Tan, A. Q. L.; Vajjala, A.; Kline, K.

10.1101/831123 — microbiology — Posted on 2019-11-05

3042 Genomic Evidence for Formate Metabolism by Chloroflexi as the Key to Unlocking Deep Carbon in Lost City Microbial Ecosystems

McGonigle, J. M.; Lang, S. Q.; Brazelton, W.

10.1101/831230 — microbiology — Posted on 2019-11-05

3043 Selective sweeps in a nutshell; the genomic footprint of rapid insecticide resistance evolution in a major insect pest of tree nuts

Calla, B.; Demkovich, M. R.; Siegel, J. P.; Gomes Viana, J. P.; Walden, K. K. O.; Robertson, H. M.; Berenbaum, M. R.

10.1101/828418 — genomics — Posted on 2019-11-05

3044 An enhancer:involucrin regulatory module impacts human skin barrier adaptation out-of-Africa and modifies atopic dermatitis risk

Mathyer, M. E.; Brettmann, E. A.; Schmidt, A. D.; Goodwin, Z. A.; Quiggle, A. M.; Oh, I. Y.; Tycksen, E.; Zhou, L.; Estrada, Y. D.; Wong, X. F. C. C.; Denil, S. L.; Matkovich, S. A.; Shemer, A.; Common, J. E.; Guttman-Yassky, E.; de Guzman Strong, C.

10.1101/816520 — genetics — Posted on 2019-11-05

3045 Dynamic Palmitoylation Events Following T-Cell Receptor Signaling

Morrison, E.; Wegner, T.; Zucchetti, A. E.; Alvaro-Benito, M.; Zheng, A.; Kliche, S.; Krause, E.; Bruegger, B.; Hivroz, C.; Freund, C.

10.1101/831388 — biochemistry — Posted on 2019-11-05

3046 Towards Practical and Robust DNA-based Data Archiving by Codec System Named ‘Yin-Yang’

Ping, Z.; Chen, S.; Huang, X.; Zhu, S.; Chai, C.; Zhang, H.; Lee, H. H.; Zhou, G.; Chiu, T.-Y.; Chen, T.; Yang, H.; Xu, X.; Church, G. M.; Shen, Y.

10.1101/829721 — synthetic biology — Posted on 2019-11-05

3047 Convergence of glandular trichome morphology and chemistry in two montane monkeyflower species

Bustamante Eguiguren, S.; Nguyen, H. A.; Caldwell, A.; Nolin, K. A.; Wu, C. A.

10.1101/827220 — plant biology — Posted on 2019-11-05

3048 Microglia control small vessel calcification via TREM2

Zarb, Y.; Nassiri, S.; Utz, S. G.; Schaffenrath, J.; Rushing, E. J.; Nilsson, P. R.; Delorenzi, M.; Colonna, M.; Greter, M.; Keller, A.

10.1101/829341 — neuroscience — Posted on 2019-11-05

3049 PROMA PLASMIDS ARE INSTRUMENTAL IN THE DISSEMINATION OF LINURON CATABOLIC GENES BETWEEN DIFFERENT GENERA

Werner, J.; Nour, E.; Bunk, B.; Sproeer, C.; Smalla, K.; Springael, D.; Oeztuerk, B.

10.1101/831255 — genomics — Posted on 2019-11-05

3050 Functional 3D architecture in an intrinsically disordered E3 ligase domain facilitates ubiquitin transfer

Murphy, P.; Xu, Y.; Rouse, S. L.; Matthews, S. J.; Penedo, J. C.; Hay, R. T.

10.1101/831362 — biophysics — Posted on 2019-11-05

3051 TGS-GapCloser: fast and accurately passing through the Bermuda in large genome using error-prone third-generation long reads

Xu, M.; Guo, L.; Gu, S.; Wang, O.; Zhang, R.; Fan, G.; Xu, X.; Deng, L.; Liu, X.

10.1101/831248 — bioinformatics — Posted on 2019-11-05

3052 Integrative analyses of the RNA modification machinery reveal tissue- and cancer-specific signatures

Begik, O.; Lucas, M. C.; Ramirez, J. M.; Liu, H.; Mattick, J. S.; Novoa, E.

10.1101/830968 — molecular biology — Posted on 2019-11-05

3053 Complete microbial genomes for public health in Australia and Southwest Pacific

Baines, S. L.; Goncalves da Silva, A.; Carter, G. P.; Jennison, A. V.; Rathnayake, I. U.; Graham, R. M. A.; Sintchenko, V.; Wang, Q.; Rockett, R. J.; Timms, V. J.; Martinez, E.; Ballard, S.; Tomita, T.; Isles, N.; Horan, K. A.; Pitchers, W.; Stinear, T. P.; Williamson, D. A.; Howden, B. P.; Communicable Diseases Genomics Network (CDGN), ; Seemann, T.

10.1101/829663 — genomics — Posted on 2019-11-05

3054 Skeletal and Dental Development Preserve Evidence of Energetic Stress in the Moose of Isle Royale

Brown, C. A.

10.1101/831156 — ecology — Posted on 2019-11-05

3055 The walkoff effect: cargo distribution implies motor type in bidirectional microtubule bundles

Zhelezov, G.; Bulgakova, N. A.; Alfred, V.; Chumakova, L.

10.1101/831024 — cell biology — Posted on 2019-11-05

3056 Using variation in arbuscular mycorrhizal fungi to drive the productivity of the food security crop cassava

Ceballos, I. C.; Mateus, I. D.; Pena, R.; Pena-Quemba, D. C.; Robbins, C.; Ordonez, Y. M.; Rosikiewicz, P.; Rojas, E. C.; Thuita, M.; Mlay, D. P.; Masso, C.; Vanlauwe, B.; Rodriguez, A.; Sanders, I. R.

10.1101/830547 — microbiology — Posted on 2019-11-05

3057 Low Carbohydrate and Low Fat Diets with Equal Protein Content Lead to Similar Improvements in Body Composition and Glucose Tolerance in Obese Mice subjected to Caloric Restriction

Minderis, P.; Fokin, A.; Dirmontas, M.; Ratkevicius, A.

10.1101/830752 — physiology — Posted on 2019-11-05

3058 From a deep learning model back to the brain - inferring morphological markers and their relation to aging

Levakov, G.; Rosenthal, G.; Shelef, I.; Riklin Raviv, T.; Avidan, G.

10.1101/803742 — neuroscience — Posted on 2019-11-05

3059 Dynamic neurotransmitter specific transcription factor expression profiles during Drosophila development

Estacio-Gomez, A.; Hassan, A.; Walmsley, E. L.; Le, L. W.; Southall, T. D.

10.1101/830315 — developmental biology — Posted on 2019-11-05

3060 A performant bridge between fixed-size and variable-size seeding

Kutzner, A.; Kim, P.-S.; Schmidt, M. R.

10.1101/825927 — bioinformatics — Posted on 2019-11-05

3061 Epigenomic profiling of neuroblastoma cell lines

Upton, K.; Modi, A.; Patel, K.; Conkrite, K. L.; Sussman, R. T.; Way, G. P.; Adams, R. N.; Sacks, G. I.; Fortina, P.; Diskin, S. J.; Maris, J. M.; Rokita, J. L.

10.1101/829754 — bioinformatics — Posted on 2019-11-05

3062 Quantitative properties of a feedback circuit predict frequency-dependent pattern separation

Braganza, O.; Mueller-Komorowska, D.; Kelly, T.; Beck, H.

10.1101/813188 — neuroscience — Posted on 2019-11-05

3063 Distinct molecular processes in placentae involved in two major subtypes of preeclampsia

Ren, Z.; Gao, Y.; Gao, Y.; Liang, G.; Chen, Q.; Jiang, S.; Yang, X.; Fan, C.; Wang, H.; Wang, J.; Shi, Y.-W.; Xiao, C.; Zhong, M.; Yu, Y.; Yang, X.

10.1101/787796 — genomics — Posted on 2019-11-05

3064 A single-cell transcriptional atlas identifies extensive heterogeneity in the cellular composition of tendons

Swanson, J. B.; De Micheli, A. J.; Disser, N. P.; Martinez, L. M.; Walker, N. R.; Cosgrove, B. D.; Mendias, C. L.

10.1101/801266 — cell biology — Posted on 2019-11-05

3065 Atypical MEG inter-subject correlation during listening to continuous natural speech in dyslexia

Thiede, A.; Glerean, E.; Kujala, T.; Parkkonen, L.

10.1101/677674 — neuroscience — Posted on 2019-11-05

3066 Small circRNAs with self-cleaving ribozymes are frequently expressed in metazoan transcriptomes

Cervera, A.; De la Pena, M.

10.1101/721605 — genomics — Posted on 2019-11-05

3067 Evolutionary decomposition of genetic effects

Liu, L.; Liu, M.; Zhang, D.; Deng, S.; Chen, P.; Yang, J.; Xie, Y.; He, X.

10.1101/688358 — genetics — Posted on 2019-11-05

3068 Light suppresses acoustically triggered predator-avoidance behaviours in moths

Huegel, T.; Goerlitz, H. R.

10.1101/727248 — animal behavior and cognition — Posted on 2019-11-05

3069 Novel neural signal features permit robust machine-learning of natural tactile- and proprioception-dominated dorsal column nuclei signals

Loutit, A. J.; Potas, J. R.

10.1101/831164 — neuroscience — Posted on 2019-11-05

3070 Enhanced emotional memory retrieval by chemogenetic activation of locus coeruleus norepinephrine neurons

Fukabori, R.; Iguchi, Y.; Takahashi, K.; Eifuku, S.; Tsuji, S.; Hazama, A.; Uchigashima, M.; Watanabe, M.; Mizuma, H.; Cui, Y.; Onoe, H.; Hikishima, K.; Yasoshima, Y.; Osanai, M.; Inagaki, R.; Fukunaga, K.; Nishijo, T.; Momiyama, T.; Benton, R.; Kobayashi, K.

10.1101/831313 — neuroscience — Posted on 2019-11-05

3071 The user’s guide to comparative genomics with EnteroBase, including case studies on transmissions of micro-clades of Salmonella, the phylogeny of ancient and modern Yersinia pestis genomes, and the core genomic diversity of all Escherichia

Zhou, Z.; Alikhan, N.-F.; Mohamed, K.; Fan, Y.; the Agama Study Group, ; Achtman, M.

10.1101/613554 — microbiology — Posted on 2019-11-05

3072 Combining statistical and mechanistic models to identify the drivers of mortality within a rear-edge beech population

Petit-Cailleux, C.; Davi, H.; Lefevre, F.; Garrigue, J.; Magdalou, J.-A.; Hurson, C.; Magnanou, E.; Muratorio, S.

10.1101/645747 — ecology — Posted on 2019-11-05

3073 LIMD1 phase separation contributes to cellular mechanics and durotaxis by regulating focal adhesion dynamics in response to force

Wang, Y.; Zhang, C.; Shao, S.; Liang, L.; Sun, Y.; Wu, C.

10.1101/828806 — cell biology — Posted on 2019-11-05

3074 Mesenchymal stem cells suppress leukemia via macrophage-mediated functional restoration of bone marrow microenvironment

Xia, C.; Wang, T.; Cheng, H.; Dong, Y.; Weng, Q.; Sun, G.; Zhou, P.; Wang, K.; Liu, X.; Geng, Y.; Ma, S.; Hao, S.; Xu, L.; Guan, Y.; Du, J.; Du, X.; Li, Y.; Zhu, X.; Shi, Y.; Xu, S.; Wang, D.; Cheng, T.; Wang, J.

10.1101/661298 — cancer biology — Posted on 2019-11-05

3075 Non-lethal oxidative stress boosts bacterial survival and evolvability under lethal exposure

Rodriguez Rojas, A.; Kim, J.; Johnston, P. R.; Makarova, O.; Eravci, M.; Weise, C.; Hengge, R.; Rolff, J.

10.1101/575134 — evolutionary biology — Posted on 2019-11-05

3076 CDK13 Mutations Drive Melanoma via Accumulation of Prematurely Terminated Transcripts

Insco, M. L.; Abraham, B. J.; Dubbury, S. J.; Dust, S.; Wu, C.; Chen, K. Y.; Liu, D.; Ludwig, C. G.; Bellaousov, S.; Fabo, T.; Henriques, T.; Adelman, K.; Geyer, M.; Sharp, P. A.; Young, R. A.; Boutz, P. L.; Zon, L. I.

10.1101/824193 — biophysics — Posted on 2019-11-05

3077 Estradiol reverses excitatory synapse loss in a cellular model of neuropsychiatric disorders

Erli, F.; Palmos, A. B.; Raval, P.; Mukherjee, J.; Sellers, K. J.; Gatford, N. J. F.; Moss, S. J.; Brandon, N. J.; Penzes, P.; Srivastava, D. P.

10.1101/455113 — neuroscience — Posted on 2019-11-05

3078 Model-based whole-brain effective connectivity to study distributed cognition in health and disease

Gilson, M.; Zamora-Lopez, G.; Pallares, V.; Adhikari, M. H.; Senden, M.; Tauste Campo, A.; Mantini, D.; Corbetta, M.; Deco, G.; Insabato, A.

10.1101/531830 — neuroscience — Posted on 2019-11-05

3079 Grid pattern development, distortions and topological defects may depend on distributed anchoring

Hägglund, M.; Morreaunet, M.

10.1101/830158 — neuroscience — Posted on 2019-11-05

3080 Mitochondrial clearance of Ca2+ controls insulin secretion

Mulder, H.; Vishnu, N.; Hamilton, A.; Bagge, A.; Wernersson, A.; Cowan, E.; Barnard, H.; Sancak, Y.; Kamer, K. J.; Spegel, P.; Fex, M.; Tengholm, A.; Mootha, V.; Nicholls, D. G.

10.1101/830323 — molecular biology — Posted on 2019-11-05

3081 Classical and controlled auditory mismatch responses to multiple physical deviances in anaesthetised and conscious mice

O'Reilly, J. A.; Conway, B. A.

10.1101/831016 — neuroscience — Posted on 2019-11-05

3082 HIV Envelope Trimer-Elicited Autologous Neutralizing Antibodies Bind a Region Overlapping the N332 Glycan Supersite

Nogal, B.; McCoy, L. E.; van Gils, M. J.; Cottrell, C. A.; Voss, J. E.; Andrabi, R.; Pauthner, M. G.; Liang, C.-H.; Messmer, T.; Nedellec, R.; Shin, M.; Turner, H. L.; Ozorowski, G.; Sanders, R. W.; Burton, D.; Ward, A. B.

10.1101/831008 — immunology — Posted on 2019-11-05

3083 Effects of CXCL12/CXCR4/CXCR7 axis on human sperm motility and chemotaxis

Wang, C.; Huang, J.; Huang, R.; Ding, L.; dai, l.; Zhou, W.

10.1101/831065 — cell biology — Posted on 2019-11-05

3084 Role of Trypanosoma cruzi nucleoside diphosphate kinase 1 in DNA-damage responses

Reigada, C.; Saye, M.; Di Girolamo, F.; Valera-Vera, E. A.; Pereira, C. A.; Miranda, M. R.

10.1101/830257 — microbiology — Posted on 2019-11-04

3085 Two common disease-associated TYK2 variants impact exon splicing and TYK2 dosage

Li, Z.; Rotival, M.; Patin, E.; Michel, F.; Pellegrini, S.

10.1101/830232 — immunology — Posted on 2019-11-04

3086 Mathematical modeling of plant cell fate transitions controlled by hormonal signals

Klawe, F. Z.; Stiehl, T.; Bastian, P.; Gaillochet, C.; Lohmann, J. U.; Marciniak-Czochra, A.

10.1101/830190 — systems biology — Posted on 2019-11-04

3087 Relationships between puroindoline-prolamin interactions and wheat grain hardness

GENEIX, N.; DALGALARRONDO, M.; TASSY, C.; NADAUD, I.; BARRET, P.; BAKAN, B.; ELMORJANI, K.; MARION, D.

10.1101/830265 — plant biology — Posted on 2019-11-04

3088 Immediate activation of chemosensory neuron gene expression by bacterial metabolites is selectively induced by distinct cyclic GMP-dependent pathways in C. elegans

Park, J.; Meisel, J. D.; Kim, D. H.

10.1101/830208 — neuroscience — Posted on 2019-11-04

3089 HUMAN BOCAVIRUS PREVALENCE IN CHILDREN WITH ACUTE GASTROENTERITIS FROM RURAL COMMUNITIES IN THE NORTHEN REGION OF SOUTH AFRICA

Rikhotso, M.; Khumela, R.; Kabue, J. P.; Traore, A. N.; Potgieter, N.

10.1101/830281 — microbiology — Posted on 2019-11-04

3090 Experimental Determination of the Force of Malaria Infection Reveals a Non-Linear Relationship to Mosquito Sporozoite Loads

Aleshnick, M.; Ganusov, V.; Nasir, G.; Yenokyan, G.; Sinnis, P.

10.1101/830299 — microbiology — Posted on 2019-11-04

3091 Research of the mechanism on miRNA193 in exosomes promotes cisplatin resistance in esophageal cancer cells

Zhu, X.; Huang, X.; Ma, X.; Zhang, Q.

10.1101/830240 — cancer biology — Posted on 2019-11-04

3092 ProSPr: Democratized Implementation of Alphafold Protein Distance Prediction Network

Billings, W. M.; Hedelius, B.; Millecam, T.; Wingate, D.; Della Corte, D.

10.1101/830273 — biophysics — Posted on 2019-11-04

3093 Natural naphthoquinones isolated from Lithospermum erythrorhizon suppress dextran sulfate sodium-induced murine experimental colitis

Sun, W. X.; Han, H. W.; Wang, Z. Y.; Wen, Z. L.; Yang, M. K.; Wang, Y. S.; Fu, J. Y.; Feng, L.; Xu, X. H.; Yin, T. M.; Wang, X. M.; Lu, G. H.; Qi, J. L.; Lin, H. Y.; Yang, Y.- H.

10.1101/830224 — biochemistry — Posted on 2019-11-04

3094 Gene expression in patient-derived neural progenitors implicates WNT5A signaling in the etiology of schizophrenia

Evgrafov, O. V.; Armoskus, C.; Wrobel, B. B.; Spitsyna, V. N.; Souaiaia, T.; Herstein, J. S.; Walker, C. P.; Nguyen, J. D.; Camarena, A.; Weitz, J. R.; Kim, J. M. H.; Lopez Duarte, E.; Wang, K.; Simpson, G. M.; Sobell, J. L.; Medeiros, H.; Pato, M. T.; Pato, C. N.; Knowles, J. A.

10.1101/209197 — genetics — Posted on 2019-11-04

3095 AMP-activated protein kinase and adenylate kinase prevent the ATP catastrophe and cytotoxic protein aggregation

Takaine, M.; Imamura, H.; Yoshida, S.

10.1101/801738 — cell biology — Posted on 2019-11-04

3096 Selection of representative genomes for 24,706 bacterial and archaeal species clusters provide a complete genome-based taxonomy

Parks, D. H.; Chuvochina, M.; Chaumeil, P.-A.; Rinke, C.; Mussig, A. J.; Hugenholtz, P.

10.1101/771964 — microbiology — Posted on 2019-11-04

3097 Unique allometry of group size and collective brain mass in humans and primates relative to other mammals

Hamilton, M. J.; Walker, R. S.

10.1101/829366 — ecology — Posted on 2019-11-04

3098 Brainstem organoids from human pluripotent stem cells contain neural crest population

Eura, N.; Matsui, T. K.; Luginbuhl, J.; Matsubayashi, M.; Nanaura, H.; Shiota, T.; Kinugawa, K.; Iguchi, N.; Kiriyama, T.; Zheng, C.; Kouno, T.; Lan, Y. J.; Kongpracha, P.; Wiriyasermkul, P.; Sakaguchi, Y. M.; Nagata, R.; Komeda, T.; Morikawa, N.; Kitayoshi, F.; Jong, M.; Kobashigawa, S.; Nakanishi, M.; Hasegawa, M.; Saito, Y.; Shiromizu, T.; Nishimura, Y.; Kasai, T.; Takeda, M.; Kobayashi, H.; Inagaki, Y.; Tanaka, Y.; Makinodan, M.; Kishimoto, T.; Kuniyasu, H.; Nagamori, S.; Muotri, A. R.; Shin, J. W.; Sugie, K.; Mori, E.

10.1101/829275 — developmental biology — Posted on 2019-11-04

3099 High-throughput screening of high protein producer budding yeast using gel microdrop technology

Fujitani, H.; Tsuda, S.; Ishii, T.; Machida, M.

10.1101/830596 — bioengineering — Posted on 2019-11-04

3100 Injection molded open microfluidic well plate inserts for user-friendly coculture and microscopy

Day, J. H.; Nicholson, T.; Su, X.; Van Neel, T.; Clinton, I.; Kothandapani, A.; Lee, J.; Greenberg, M.; Amory, J.; Walsh, T.; Muller, C.; Franco, O.; Jefcoate, C.; Crawford, S.; Jorgensen, J.; Theberge, A.

10.1101/709626 — bioengineering — Posted on 2019-11-04

3101 A Long Lost Key Opens an Ancient Lock: Drosophila Myb Causes a Synthetic Multivulval Phenotype in Nematodes

Vorster, P. J.; Goetsch, P.; Wijeratne, T. U.; Guiley, K. Z.; Andrejka, L.; Tripati, S.; Larson, B. J.; Rubin, S. M.; Strome, S.; Lipsick, J. S.

10.1101/788265 — molecular biology — Posted on 2019-11-04

3102 A hidden integral structure endows Absolute Concentration Robust systems with resilience to dynamical concentration disturbances

Cappelletti, D.; Gupta, A.; Khammash, M.

10.1101/830430 — synthetic biology — Posted on 2019-11-04

3103 Redefining Interleukin 11 as a regeneration-limiting hepatotoxin

Widjaja, A. A.; Dong, J. R.; Adami, E.; Viswanathan, S.; NG, B.; Singh, B. K.; Lim, W.-W.; Zhou, J.; Pakkiri, L. S.; Shekeran, S. G.; Tan, J.; Lim, S. Y.; Wang, M.; Holgate, R.; Hearn, A.; Yen, P. M.; Chothani, S.; Felkin, L.; Dear, J. W.; Drum, C. L.; Schafer, S.; Cook, S. A.

10.1101/830018 — physiology — Posted on 2019-11-04

3104 Robust, general purpose, digital power line hum filter which is free of deformations and which can be applied to large transients

de Lussanet de la Sabloniere, M. H. E.

10.1101/830463 — neuroscience — Posted on 2019-11-04

3105 Lysenin toxin insertion mechanism is Calcium-dependent

Munguira, I. L. B.

10.1101/771725 — biophysics — Posted on 2019-11-04

3106 Deep convolutional neural network and attention mechanism based pan-specific model for interpretable MHC-I peptide binding prediction

Jin, J.; Liu, Z.; Nasiri, A.; Cui, Y.; Louis, S.-Y.; Zhang, A.; Zhao, Y.; Hu, J.

10.1101/830737 — bioinformatics — Posted on 2019-11-04

3107 Potpourri: An Epistasis Test Prioritization Algorithm via Diverse SNP Selection

Caylak, G.; Cicek, A. E.

10.1101/830216 — bioinformatics — Posted on 2019-11-04

3108 Ytterbium-doped fibre femtosecond laser offers robust design with deep and precise microsurgery

Harreguy, M. B.; Marfil, V.; Gabel, C. V.; Chung, S. H.; Haspel, G.

10.1101/829242 — neuroscience — Posted on 2019-11-04

3109 Mul1 suppresses Nlrp3 inflammasome activation through ubiquitination and degradation of Asc

Kim, J.-H.; Lee, Y.; Suh, G. Y.; Lee, Y.-S.

10.1101/830380 — immunology — Posted on 2019-11-04

3110 The olfactory bulb contributes to the adaptation of odor responses: the input-output transformation

Storace, D. A.; Cohen, L. B.

10.1101/829531 — neuroscience — Posted on 2019-11-04

3111 Genome-wide DNA methylation analysis of heavy cannabis use in a New Zealand longitudinal cohort

Osborne, A. J.; Pearson, J. F.; Noble, A. J.; Gemmell, N. J.; Horwood, L. J.; Boden, J. M.; Benton, M.; Macartney-Coxson, D. P.; Kennedy, M. A.

10.1101/829598 — genomics — Posted on 2019-11-04

3112 Genetic interaction between two unlinked loci underlies the loss of self-incompatibility in Arabidopsis lyrata

Li, Y.; van Kleunen, M.; Stift, M.

10.1101/830414 — genetics — Posted on 2019-11-04

3113 Candidate methylation sites associated with endocrine therapy resistance in the TCGA ER+/HER2- breast cancer cohort

Soleimani Dodaran, M.; Borgoni, S.; Sofyali, E.; Verschure, P. J.; Wiemann, S.; Moerland, P. D.; van Kampen, A. H. C.

10.1101/826198 — bioinformatics — Posted on 2019-11-04

3114 Fatigue, effort perception and central activation failure in chronic stroke survivors: a TMS and fMRI investigation

Turner, I.; Ward, N.; Kuppuswamy, A.

10.1101/821959 — neuroscience — Posted on 2019-11-04

3115 Unraveling the complex story of intergenomic recombination in ABB allotriploid bananas

Cenci, A.; Sardos, J.; Hueber, Y.; Martin, G.; Breton, C.; Roux, N.; Swennen, R.; Carpentier, S. C.; Rouard, M.

10.1101/830059 — genomics — Posted on 2019-11-04

3116 Cyclic and Multilevel Causation in Evolutionary Processes

Warrell, J.; Gerstein, M.

10.1101/830422 — evolutionary biology — Posted on 2019-11-04

3117 High-yield Production of Recombinant Platelet Factor 4 Protein by Harnessing and Honing the Gram-negative Bacterial Secretory Apparatus

Ataei, S.; Taheri, M. N.; Taheri, F.; Zare, F.; Amirian, N.; Behzad-Behbahani, A.; Rahimi, A.; Tamaddon, G.

10.1101/830851 — bioengineering — Posted on 2019-11-04

3118 Decoding and encoding models reveal how the depth of processing shapes the brain representation of meaning

Soto, D.; Sheikh, U. A.; Mei, N.; Santana, R.

10.1101/830448 — neuroscience — Posted on 2019-11-04

3119 Using variation in arbuscular mycorrhizal fungi to drive the productivity of the food security crop cassava

Ceballos, I. C.; Mateus, I. D.; Pena, R.; Pena-Quemba, D. C.; Robbins, C.; Ordonez, Y. M.; Rosikiewicz, P.; Rojas, E. C.; Thuita, M.; Mlay, D. M.; Masso, C.; Vanlauwe, B.; Rodriguez, A.; Sanders, I. R.

10.1101/830547 — microbiology — Posted on 2019-11-04

3120 Microfluidic removal of teratoma-forming cells from hiPSC-derived Neural Progenitor Cells

Wellmerling, K. M.; Lehmann, C.; Singh, A.; Kirby, B. J.

10.1101/830588 — developmental biology — Posted on 2019-11-04

3121 Enzalutamide-induced PTH1R-mediated TGFBR2 decrease in osteoblasts contributes to resistance in bone-metastatic prostate cancer

Su, S.; Cao, J.; Meng, X.; Liu, R.; Vander Ark, A.; Woodford, E.; Zhang, R.; Stiver, I.; Zhang, X.; Madaj, Z. B.; Bowman, M. J.; Yu, H.; Xu, E.; Li, X.

10.1101/829044 — cancer biology — Posted on 2019-11-04

3122 Biosynthetic engineering of the antifungal, anti-MRSA auroramycin

Yeo, W. L.; Heng, E.; Tan, L. L.; Lim, Y. W.; Ching, K. C.; Tsai, D.-J.; Jhang, Y. W.; Lauderdale, T.-L.; Shia, K.-S.; Zhao, H.; Ang, E. L.; Zhang, M. M.; Lim, Y. H.; Wong, F. T.

10.1101/829812 — bioengineering — Posted on 2019-11-04

3123 A 2-Compartment Bone Tumor Model for Testing the Efficacy of Cancer Drugs

Komez, A.; Buyuksungur, A.; Antmen, E.; Swieszkowskic, W.; Hasirci, N.; Hasirci, V.

10.1101/829879 — bioengineering — Posted on 2019-11-04

3124 Regulation of islet function and gene expression by prolactin during pregnancy

Shrivastava, V.; Lee, M.; Pretorius, M.; Makkar, G.; Huang, C.

10.1101/830836 — physiology — Posted on 2019-11-04

3125 Dentate gyrus somatostatin cells are required for contextual discrimination during episodic memory encoding

Morales, C.; Morici, J. F.; Espinosa, N.; Sacson, A.; Lara-Vasquez, A.; Garcia-Perez, M. A.; Bekinschtein, P.; Weisstaub, N. V.; Fuentealba, P.

10.1101/830182 — neuroscience — Posted on 2019-11-04

3126 Integrins protect nociceptive neurons in models of paclitaxel-mediated peripheral sensory neuropathy

Shin, G. J.-e.; Pero, M. E.; Hammond, L. A.; Burgos, A.; Galindo, S. E.; Bartolini, F.; Grueber, W. B.

10.1101/829655 — neuroscience — Posted on 2019-11-04

3127 Transmission from vaccinated hosts can cause dose-dependent reduction in pathogen virulence

Bailey, R. I.; Cheng, H. H.; Chase-Topping, M.; Mays, J. K.; Anacleto, O.; Dunn, J. R.; Doeschl-Wilson, A.

10.1101/830570 — microbiology — Posted on 2019-11-04

3128 Diversification of Reprogramming Trajectories Revealed by Parallel Single-cell Transcriptome and Chromatin Accessibility Sequencing

Xing, Q.; Farran, C. E.; Gautam, P.; Chuah, Y. S.; Warrier, T.; Toh, C.-X. D.; Kang, N.-Y.; Sugii, S.; Chang, Y.-T.; Xu, J.; Collins, J.; Daley, G.; Li, H.; Zhang, L.-F.; Loh, Y.-H.

10.1101/829853 — genomics — Posted on 2019-11-04

3129 Recapitulating idiopathic pulmonary fibrosis related alveolar epithelial dysfunction in an iPSC-derived air-liquid interface model

Schruf, E.; Schroeder, V.; Le, H. Q.; Schoenberger, T.; Raedel, D.; Stewart, E. L.; Fundel-Clemens, K.; Bluhmki, T.; Weigle, S.; Schuler, M.; Thomas, M. J.; Heilker, R.; Webster, M. J.; Dass, M.; Frick, M.; Stierstorfer, B.; Quast, K.; Garnett, J. P.

10.1101/830109 — cell biology — Posted on 2019-11-04

3130 High Yield Monolayer Graphene Grids for Near-Atomic Resolution Cryo-Electron Microscopy

Han, Y.; Fan, X.; Wang, H.; Zhao, F.; Tully, C. G.; Kong, J.; Yao, N.; Yan, N.

10.1101/827089 — biophysics — Posted on 2019-11-04

3131 Palmitate-induced toxicity is associated with impaired mitochondrial respiration and accelerated oxidative stress in cultured cardiomyocytes: the critical role of Coenzyme Q9/10

Dludla, P. V.; Silvestri, S.; Orlando, P.; Mazibuko-Mbeje, S.; Johnson, R.; Marcheggiani, F.; Cirilli, I.; Muller, C. J. F.; Louw, J.; Chellan, N.; Obonye, N.; Nkambule, B. B.; Tiano, L.

10.1101/830331 — biochemistry — Posted on 2019-11-04

3132 Transient Receptor Potential Ankyrin 1 Mediates Afferent Signals in the Inflammatory Reflex

Silverman, H. A.; Gunasekaran, M.; Chang, E. H.; Chang, Q.; Addorisio, M. E.; Stiegler, A.; Kressel, A. M.; Li, J. H.; Tsaava, T.; Huerta, T. S.; Pavlov, V. A.; Andersson, U.; Chavan, S. S.; Tracey, K. J.

10.1101/822734 — physiology — Posted on 2019-11-04

3133 Functional connectivity between the cerebellum and somatosensory areas implements the attenuation of self-generated touch

Kilteni, K.; Ehrsson, H. H.

10.1101/830646 — neuroscience — Posted on 2019-11-04

3134 Automaticity in the reading circuitry

Joo, S. J.; Tavabi, K.; Yeatman, J. D.

10.1101/829937 — neuroscience — Posted on 2019-11-04

3135 Frontoparietal action-oriented codes support novel task set implementation

Gonzalez-Garcia, C.; Formica, S.; Wisniewski, D.; Brass, M.

10.1101/830067 — neuroscience — Posted on 2019-11-04

3136 Noise-Dampening Ear-Protectors improve performance on the heartbeat tracking task, but do not necessarily enhance interoception.

Todd, J.; Hina, F.; Aspell, J. E.

10.1101/830141 — neuroscience — Posted on 2019-11-04

3137 Dietary fat and fiber impacts intestinal microbiome resilience to antibiotics and Clostridoides difficile infection in mice

Hazleton, K. Z.; Martin, C. G.; Arnolds, K. L.; Nusbacher, N. M.; Moreno-Huizar, N.; Armstrong, M. L.; Reisdorph, N.; Lozupone, C. A.

10.1101/828939 — microbiology — Posted on 2019-11-04

3138 Selective carbon sources influence the end-products of microbial nitrate respiration

Carlson, H. K.; Lui, L. M.; Price, M. N.; Kazakov, A. E.; Carr, A. V.; Kuehl, J. V.; Owens, T. K.; Nielsen, T.; Arkin, A. P.; Deutschbauer, A. M.

10.1101/829143 — microbiology — Posted on 2019-11-04

3139 Multiple chromosomal inversions contribute to adaptive divergence of a dune sunflower ecotype

Huang, K.; Andrew, R. L.; Owens, G. L.; Ostevik, K. L.; Rieseberg, L. H.

10.1101/829622 — evolutionary biology — Posted on 2019-11-04

3140 DCP2 plays multiple roles during Drosophila development - possible case of moonlighting?

Kunar, R.; Roy, J. K.

10.1101/830729 — cell biology — Posted on 2019-11-04

3141 Cellular crowding guides and debundles the microtubule cytoskeleton

Plochocka, A. Z.; Bulgakova, N. A.; Chumakova, L.

10.1101/830919 — cell biology — Posted on 2019-11-04

3142 Visual Analytics for Deep Embeddings of Large Scale Molecular Dynamics Simulations

Chae, J.; Bhowmik, D.; Ma, H.; Ramanathan, A.; Steed, C.

10.1101/830844 — bioinformatics — Posted on 2019-11-04

3143 Evaluation of CD8 T cell killing models with computer simulations of 2-photon imaging experiments

Rastogi, A.; Robert, P. A.; Halle, S.; Meyer-Hermann, M.

10.1101/830505 — systems biology — Posted on 2019-11-04

3144 An Integrated Multiscale, Multicellular Skin Model

Tasseff, R.; Aguilar, B.; Kahan, S.; Kang, S.; Bascom, C. C.; Isfort, R. J.

10.1101/830711 — systems biology — Posted on 2019-11-04

3145 Low Carbohydrate and Low Fat Diets with Equal Protein Content Lead to Similar Improvements in Body Composition and Glucose Tolerance in Obese Mice subjected to Caloric Restriction

Minderis, P.; Fokin, A.; Dirmontas, M.; Ratkevicius, A.

10.1101/830752 — physiology — Posted on 2019-11-04

3146 Dynamic connectivity maps of pericytes and endothelial cells mediate neurovascular coupling in health and disease

Kovacs-Oller, T.; Ivanova, E.; Bianchimano, P.; Sagdullaev, B. T.

10.1101/830398 — neuroscience — Posted on 2019-11-04

3147 Toward One-Shot Learning in Neuroscience-Inspired Deep Spiking Neural Networks

Faghihi, F.; Molhem, H.; Moustafa, A.

10.1101/829556 — neuroscience — Posted on 2019-11-04

3148 Molecular Screening of Hemoglobin S Variant in Anemia Patients of Eastern UP Population

Rai, V.; Yadav, U.; Kumar, P.

10.1101/830117 — molecular biology — Posted on 2019-11-04

3149 Blood RNA Signatures Predict Recent Tuberculosis Exposure in Mice, Macaques and Humans

Ault, R. C.; Headley, C. A.; Hare, A. E.; Carruthers, B. J.; Mejias, A.; Turner, J.

10.1101/830794 — immunology — Posted on 2019-11-04

3150 A virus hosted in malaria-infected blood protects against T cell-mediated inflammatory diseases by impairing DC function in a type I IFN-dependent manner

Hassan, A.; Wlodarczyk, M. F.; Benamar, M.; Bassot, E.; Salvioni, A.; Kassem, S.; Berry, A.; Saoudi, A.; Blanchard, N.

10.1101/830687 — immunology — Posted on 2019-11-04

3151 PCH-2TRIP13 regulates spindle checkpoint strength

Defachelles, L.; Russo, A. E.; Nelson, C. R.; Bhalla, N.

10.1101/389080 — cell biology — Posted on 2019-11-04

3152 Deep Generative Models for 3D Compound Design

Imrie, F.; Bradley, A. R.; van der Schaar, M.; Deane, C. M.

10.1101/830497 — bioinformatics — Posted on 2019-11-04

3153 Expansion Microscopy of Lipid Membranes

Karagiannis, E. D.; Kang, J. S.; Shin, T. W.; Emenari, A.; Asano, S.; Lin, L.; Costa, E. K.; CRUK IMAXT Grand Challenge Consortium, ; Marblestone, A. H.; Kasthuri, N.; Boyden, E. S.

10.1101/829903 — bioengineering — Posted on 2019-11-04

3154 Mind the Outgroup: Influence of Taxon Sampling on Total-Evidence Dating of Pimpliform Parasitoid Wasps (Hymenoptera, Ichneumonidae)

Spasojevic, T.; Broad, G. R.; Saaksjarvi, I.; Schwarz, M.; Ito, M.; Korenko, S.; Klopfstein, S.

10.1101/826552 — zoology — Posted on 2019-11-04

3155 Patient stratification of clear cell renal cell carcinoma using the global transcription factor activity landscape derived from RNA-seq data

Zhu, Y.; Cang, S.; Chen, B.; Gu, Y.; Jiang, M.; Yan, J.; Shao, F.; Huang, X.

10.1101/829796 — systems biology — Posted on 2019-11-04

3156 Semi-supervised machine learning facilitates cell colocalization and tracking in intravital microscopy

Pizzagalli, D. U.; Thelen, M.; Gonzalez, S. F.; Krause, R.

10.1101/829838 — systems biology — Posted on 2019-11-04

3157 GmPTF1 Modifies Root Architecture Responses to Phosphate Starvation in Soybean

Yang, Z.; He, Y.; Liu, Y.; Lai, Y.; Zheng, J.; Li, X.; Liao, H.

10.1101/830612 — physiology — Posted on 2019-11-04

3158 Robust, automated sleep scoring by a compact neural network with distributional shift correction

Barger, Z.; Frye, C. G.; Liu, D.; Dan, Y.; Bouchard, K. E.

10.1101/813345 — neuroscience — Posted on 2019-11-04

3159 Alpha-synuclein antisense oligonucleotides as a disease-modifying therapy for Parkinson’s disease

Cole, T. A.; Zhao, H.; Collier, T. J.; Sandoval, I. M.; Sortwell, C. E.; Steece-Collier, K.; Daley, B. F.; Booms, A.; Lipton, J.; Welch, M.; Berman, M.; Jandreski, L.; Graham, D.; Weihofen, A.; Celano, S.; Schulz, E.; Cole-Strauss, A.; Luna, E.; Quach, D.; Mohan, A.; Bennett, C. F.; Swayze, E. E.; Kordasiewicz, H. B.; Luk, K. C.; Paumier, K. L.

10.1101/830554 — neuroscience — Posted on 2019-11-04

3160 Peptidoglycan sensing prevents quiescence and promotes quorum-independent growth of uropathogenic Escherichia coli

DiBiasio, E. C.; Ranson, H. J.; Johnson, J. R.; Rowley, D. C.; Cohen, P. S.; Camberg, J. L.

10.1101/830877 — microbiology — Posted on 2019-11-04

3161 Contextual flexibility in Pseudomonas aeruginosa central carbon metabolism during growth in single carbon sources

Dolan, S. K.; Kohlstedt, M.; Trigg, S.; Ramirez, P. V.; Wittmann, C.; Kaminski, C. F.; Welch, M.

10.1101/828012 — microbiology — Posted on 2019-11-04

3162 AtacWorks: A deep convolutional neural network toolkit for epigenomics

Lal, A.; Chiang, Z. D.; Yakovenko, N.; Duarte, F. M.; Israeli, J.; Buenrostro, J. D.

10.1101/829481 — genomics — Posted on 2019-11-04

3163 Eco-evolutionary dynamics of nested Darwinian populations and the emergence of community-level heredity

Doulcier, G.; Lambert, A.; De Monte, S.; Rainey, P. B.

10.1101/827592 — evolutionary biology — Posted on 2019-11-04

3164 In silico analysis of Missense Variants in Human MPL Gene Associated with Essential Thrombocythemia

Elbager, S. G.; Makkawi, A. A.; Mohamed, H. A.; Abdelrahman, F. A.; Osman, L. H.; Hameed, M. F.; Elrashid, A. M.; Basher, M. Y.; Khalil, S. I.; Bayoumi, M.

10.1101/830372 — bioinformatics — Posted on 2019-11-04

3165 Differential complex formation via paralogs in the human Sin3 protein interaction network.

Adams, M. K.; Banks, C.; Thornton, J. L.; Sardiu, M.; Killer, M.; Kempf, C.; Florens, L.; Washburn, M.

10.1101/830828 — systems biology — Posted on 2019-11-04

3166 Translationally relevant transcriptomic alterations in mouse ischemic cerebral microvessels

Callegari, K.; Dash, S.; Uchida, H.; Lee, Y.; Ito, A.; Zhang, T.; Xiang, J.; Sanchez, T.

10.1101/829820 — neuroscience — Posted on 2019-11-04

3167 Development of Dynamic Functional Architecture during Early Infancy

Wen, X.; Wang, R.; Lin, W.; Zhang, H.; Shen, D.

10.1101/829846 — neuroscience — Posted on 2019-11-04

3168 Comparison of in vitro and in planta toxicity of Vip3A for lepidopteran herbivores

Khan, M. H.; Jander, G.; Mukhtar, Z.; Arshad, M.; Sarwar, M.; Asad, S.

10.1101/829895 — molecular biology — Posted on 2019-11-04

3169 Parallel Bimodal Single-cell Sequencing of Transcriptome and Chromatin Accessibility

Xing, Q. R.; Farran, C. E.; Yi, Y.; Warrier, T.; Gautam, P.; Collins, J.; Xu, J.; Li, H.; Zhang, L.-F.; Loh, Y.-H.

10.1101/829960 — genomics — Posted on 2019-11-04

3170 Genomics of a complete butterfly continent

Zhang, J.; Cong, Q.; Shen, J.; Opler, P. A.; Grishin, N. V.

10.1101/829887 — genomics — Posted on 2019-11-04

3171 Genetic structure at national and regional scale in a long-distance dispersing pest organism, the bird cherry-oat aphid Rhopalosiphum padi

Morales-Hojas, R.; Gonzalez-uriarte, A.; Alvira Iraizoz, F.; Jenkins, T.; Alderson, L.; Kruger, T.; Hall, M. J.; Greenslade, A.; Shortall, C. R.; Bell, J. R.

10.1101/829986 — evolutionary biology — Posted on 2019-11-04

3172 Software for detecting heterogeneous evolutionary processes across aligned sequence data

Jermiin, L. S.; Lovell, D. R.; Misof, B.; Foster, P. G.; Robinson, J.

10.1101/828996 — evolutionary biology — Posted on 2019-11-04

3173 Epigenomic profiling of neuroblastoma cell lines

Upton, K.; Modi, A.; Patel, K.; Conkrite, K. L.; Sussman, R. T.; Way, G. P.; Adams, R. N.; Sacks, G. I.; Fortina, P.; Maris, J. M.; Rokita, J. L.

10.1101/829754 — bioinformatics — Posted on 2019-11-04

3174 Mechanical matching of implant to host minimises foreign body reaction

Carnicer-Lombarte, A.; Barone, D. G.; Dimov, I. B.; Hamilton, R. S.; Prater, M.; Zhao, X. X.; Rutz, A. L.; Malliaras, G. G.; Lacour, S. P.; Bryant, C. E.; Fawcett, J. W.; Franze, K.

10.1101/829648 — bioengineering — Posted on 2019-11-04

3175 Clofarabine commandeers the RNR-alpha-ZRANB3 nuclear signaling axis

Long, M. J.; Zhao, Y.; Aye, Y.

10.1101/830745 — biochemistry — Posted on 2019-11-04

3176 Environmental DNA analysis shows high potential as a tool for estimating intraspecific genetic diversity in a wild fish population

Tsuji, S.; Maruyama, A.; Miya, M.; Ushio, M.; Sato, H.; Minamoto, T.; Yamanaka, H.

10.1101/829770 — molecular biology — Posted on 2019-11-04

3177 Independent evolution of cutaneous lymphoma subclones in different microenvironments of the skin

Iyer, A.; Hennessey, D.; O'Keefe, S.; Patterson, J.; Wang, W.; Wong, G. K.-S.; Gniadecki, R.

10.1101/829671 — cancer biology — Posted on 2019-11-04

3178 DeepDBP: Deep Neural Networks for Identification of DNA-binding Proteins

Shatabda, S.; Shadab, S.; Khan, M. T. A.; Neezi, N. A.; Adilina, S.

10.1101/829432 — bioinformatics — Posted on 2019-11-04

3179 The resolution revolution in cryoEM requires new sample preparation procedures: A rapid pipeline to high resolution maps of yeast FAS

Joppe, M.; D'Imprima, E.; Salustros, N.; Paithankar, K. S.; Vonck, J.; Grininger, M.; Kuehlbrandt, W.

10.1101/829176 — biochemistry — Posted on 2019-11-04

3180 A cross-species assessment of behavioral flexibility in compulsive disorders

Benzina, N.; N'Diaye, K.; Pelissolo, A.; Mallet, L.; Burguiere, E.

10.1101/542100 — neuroscience — Posted on 2019-11-04

3181 Ultra-high field imaging of hippocampal neuroanatomy in first episode psychosis demonstrates receptor-specific morphometric patterning

Park, M. T. M.; Jeon, P.; Khan, A. R.; Dempster, K.; Chakravarty, M.; Lerch, J.; MacKinley, M.; Theberge, J.; Palaniyappan, L.

10.1101/829630 — neuroscience — Posted on 2019-11-04

3182 Pharmacological inhibition of lysine-specific demethylase 1 (LSD1) induces global transcriptional deregulation and ultrastructural alterations that impair viability in Schistosoma mansoni

Coutinho Carneiro, V.; de Abreu da Silva, I. C.; Amaral, M. S.; Pereira, A. S.; Oliveira, G.; Pires, D. S.; Verjovski-Almeida, S.; Dekker, F. J.; Rotili, D.; Mai, A.; Torres, E. J.; Robaa, D.; Sippl, W.; Pierce, R. J.; Borrello, M. T.; Ganesan, A.; Lancelot, J.; Thiengo, S.; Fernandez, M. A.; Vicentino, A. R.; Mourao, M. M.; Coelho, F. S.; Fantappie, M. R.

10.1101/829549 — molecular biology — Posted on 2019-11-04

3183 Close relationships between coral-associated Chromera strains despite differences within the Symbiodiniaceae

Mohamed, A. R.; Chan, C. X.; Ragan, M. A.; Zhang, J.; Cooke, I.; Ball, E.; Miller, D. J.

10.1101/825992 — genomics — Posted on 2019-11-04

3184 A peek into Western Indian Ocean microbial richness: a pilot for a coral microbiome study

Wambua, S.; Gourle, H.; de Villiers, E.; Ngoi, J.; Macdonald, A.; Rudloff, E. B.; de Villiers, S.

10.1101/829564 — genomics — Posted on 2019-11-04

3185 CRB2 controls primary ciliogenesis in association with PAR6α, HOOK2 and RAB8A

Barthelemy-Requin, M.; Massey-Harroche, D.; Audebert, S.; Borg, J.-P.; Wijnholds, J.; Le Bivic, A.

10.1101/830166 — cell biology — Posted on 2019-11-04

3186 Alpha 6 integrins promote cytokinesis by regulating the expression of RSK2 and MKLP1

Singh, N.; Xu, H.; Thiemann, R.; DeSantis, K.; Larsen, M.; LaFlamme, S. E.

10.1101/830562 — cell biology — Posted on 2019-11-04

3187 Brd4-bound enhancers drive critical sex differences in glioblastoma

Kfoury, N.; Qi, Z.; Wilkinson, M.; Broestl, L.; Berrett, K.; Moudgil, A.; Sankararaman, S.; Chen, X.; Gertz, J.; Mitra, R.; Rubin, J. B.

10.1101/199059 — genomics — Posted on 2019-11-04

3188 The Mammalian Cytosolic Thioredoxin Reductase Pathway Acts via a Membrane Protein to Reduce ER-localised Proteins

Cao, X.; Lilla, S.; Cao, Z.; Pringle, M. A.; Oka, O. B.; Robinson, P. J.; Szmaja, T.; van Lith, M.; Zanivan, S.; Bulleid, N.

10.1101/830026 — cell biology — Posted on 2019-11-04

3189 Dual Roles of the Retinal Pigment Epithelium and Lens in Cavefish Eye Degeneration

Ma, L.; Ng, M.; van der Weele, C. M.; Yoshizawa, M.; Jeffery, W. R.

10.1101/830885 — developmental biology — Posted on 2019-11-04

3190 MS2-TRIBE evaluates protein-RNA interactions and nuclear organization of transcription by RNA editing

Biswas, J.; Rahman, R.; Gupta, V.; Rosbash, M.; Singer, R.

10.1101/829606 — cell biology — Posted on 2019-11-04

3191 Cortical cell stiffness is independent of substrate mechanics

Rheinlaender, J.; Dimitracopoulos, A.; Wallmeyer, B.; Kronenberg, N. M.; Chalut, K. J.; Gather, M. C.; Betz, T.; Charras, G. T.; Franze, K.

10.1101/829614 — biophysics — Posted on 2019-11-04

3192 Separable regulation of POW1 in TAF2-mediated grain development and BR-mediated leaf angle formation in rice

Yao, S.; Zhang, L.; Wang, R.; Wang, Y.; Xu, Y.; Fang, S.; Chu, J.

10.1101/830620 — developmental biology — Posted on 2019-11-04

3193 Dynamic neurotransmitter specific transcription factor expression profiles during Drosophila development

Estacio-Gomez, A.; Hassan, A.; Walmsley, E. L.; Le, L. W.; Southall, T. D.

10.1101/830315 — developmental biology — Posted on 2019-11-04

3194 Fibrin fragment E potentiates TGF-β-induced myofibroblast activation and recruitment

Fuchs, P. F.; Heindryckx, F.; Calitz, C.; Binet, F.; Solbak, S. O.; Danielson, H. U.; Kreuger, J.; Gerwins, P.

10.1101/829945 — cell biology — Posted on 2019-11-04

3195 CTP synthase forms cytoophidia in archaea

Zhou, S.; Xiang, H.; Liu, J.-L.

10.1101/830091 — cell biology — Posted on 2019-11-04

3196 Human T cells employ conserved AU-rich elements to fine-tune IFN-γ production

Freen-van Heeren, J. J.; Popovic, B.; Guislain, A.; Wolkers, M. C.

10.1101/830042 — immunology — Posted on 2019-11-04

3197 Subcellular mRNA localization regulates ribosome biogenesis in migrating cells

Dermit, M.; Dodel, M.; Lee, F. C. Y.; Azman, M. S.; Schwenzer, H.; Jones, J. L.; Blagden, S. P.; Ule, J.; Mardakheh, F. K.

10.1101/829739 — cell biology — Posted on 2019-11-04

3198 Nix induced mitochondrial fission, mitophagy, and myocyte insulin resistance are abrogated by PKA phosphorylation.

da Silva Rosa, S. C.; Martens, M. D.; Field, J. T.; Nguyen, L.; Kereliuk, S.; Hai, Y.; Chapman, D.; Diehl-Jones, W.; Aliani, M.; West, A. R.; Thliveris, J.; Ghavami, S.; Rampitsch, C.; Dolinsky, V. W.; Gordon, J.

10.1101/825828 — cell biology — Posted on 2019-11-04

3199 Ancient balancing selection maintains incompatible versions of a conserved metabolic pathway in yeast

Boocock, J.; Sadhu, M. J.; Bloom, J. S.; Kruglyak, L.

10.1101/829325 — evolutionary biology — Posted on 2019-11-04

3200 Stability of cortical synapses across sleep and wake

Cary, B. A.; Turrigiano, G. G.

10.1101/829234 — neuroscience — Posted on 2019-11-04

3201 Prefrontal deep projection neurons enable cognitive flexibility via persistent feedback monitoring

Spellman, T.; Svei, M.; Liston, C.

10.1101/828590 — neuroscience — Posted on 2019-11-04

3202 An optimized workflow for single-cell transcriptomics and repertoire profiling of purified lymphocytes from clinical samples.

Hanamsagar, R.; Reizis, T.; Chamberlain, M.; Marcus, R.; Nestle, F.; de Rinaldis, E.; Savova, V.

10.1101/803031 — immunology — Posted on 2019-11-04

3203 Genomic data enables genetic evaluation using data recorded on low-middle income country smallholder dairy farms

Powell, O. M.; Mrode, R.; Gaynor, R. C.; Johnsson, M.; Gorjanc, G.; Hickey, J. M.

10.1101/827956 — genetics — Posted on 2019-11-04

3204 Defective Nucleotide Catabolism Defines a Subset of Cancers Sensitive to Purine Nucleoside Phosphorylase Inhibition

Abt, E. R.; Lok, V.; Le, T. M.; Poddar, S.; Kim, W.; Capri, J. R.; Abril-Rodriguez, G.; Donahue, T. R.; Czernin, J.; Mehrling, T.; Ribas, A.; Radu, C. G.

10.1101/810093 — cancer biology — Posted on 2019-11-04

3205 GPSRdocker: A Docker-based Resource for Genomics, Proteomics and Systems biology

Agrawal, P.; Kumar, R.; Usmani, S. S.; Dhall, A.; Patiyal, S.; Sharma, N.; Kaur, H.; Kumar, V.; Kaur, D.; Jain, S.; Pande, A.; Bhalla, S.; Raghava, G. P. S.

10.1101/827766 — bioinformatics — Posted on 2019-11-04

3206 Paired Associative Stimulation Fails to Induce Plasticity in Freely Behaving Intact Rats

Ting, W. K.-C.; Huot-Lavoie, M.; Ethier, C.

10.1101/765636 — neuroscience — Posted on 2019-11-04

3207 PI 3-kinase delta enhances axonal PIP3 to support axon regeneration in the adult CNS

Barber, A. C.; Evans, R. S.; Nieuwenhuis, B.; Pearson, C. S.; Fuchs, J.; MacQueen, A. R.; Erp, S. v.; Haenzi, B.; Hulshof, L. A.; Osborne, A.; Conceicao, R.; Deshpande, S. S.; Cave, J.; ffrench-Constant, C.; Smith, P. D.; Okkenhaug, K.; Eickholt, B. J.; Martin, K. R.; Fawcett, J. W.; Eva, R.

10.1101/787994 — neuroscience — Posted on 2019-11-04

3208 The Clp System in Malaria Parasites Degrades Essential Substrates to Regulate Plastid Biogenesis

Florentin, A.; Stephens, D. R.; Brooks, C. F.; Baptista, R. P.; Muralidharan, V.

10.1101/718452 — microbiology — Posted on 2019-11-04

3209 The Intrinsically Disordered Region of ExbD is Required for Signal Transduction

Kopp, D. R.; Postle, K.

10.1101/797811 — microbiology — Posted on 2019-11-04

3210 Using the Tea Bag Index to unravel how interactions between an antibiotic (Trimethoprim) and endocrine disruptor (17a-estradiol) affect aquatic microbial activity.

Hunter, W. R.; Williamson, A.; Sarneel, J. M.

10.1101/809426 — microbiology — Posted on 2019-11-04

3211 The proton pump inhibitor omeprazole does not promote Clostridioides difficile colonization in a murine model

Tomkovich, S. T.; Lesniak, N. A.; Li, Y.; Bishop, L.; Fitzgerald, M. J.; Schloss, P. D.

10.1101/775411 — microbiology — Posted on 2019-11-04

3212 A Structurally-Validated Multiple Sequence Alignment of 497 Human Protein Kinase Domains

Modi, V.; Dunbrack, R.

10.1101/776740 — bioinformatics — Posted on 2019-11-04

3213 High precision coding in mouse visual cortex

Stringer, C.; Michaelos, M.; Pachitariu, M.

10.1101/679324 — neuroscience — Posted on 2019-11-04

3214 Natural killer cell activation by respiratory syncytial virus-specific antibodies is decreased in infants with severe respiratory infections and correlates with Fc-glycosylation

van Erp, E. A.; Lakerveld, A. J.; de Graaf, E.; Larsen, M. D.; Schepp, R. M.; Hipgrave Ederveen, A. L.; Ahout, I. M. L.; de Haan, C. A. M.; Wuhrer, M.; Luytjes, W.; Ferwerda, G.; Vidarsson, G.; van Kasteren, P. B.

10.1101/750141 — immunology — Posted on 2019-11-04

3215 Re-introduction of dengue virus serotype 2 in the state of Rio de Janeiro after almost a decade of epidemiological silence

Torres, M. C.; de Bruycker Nogueira, F.; Fernandes, C. A.; Louzada Silva Meira, G.; Ferreira de Aguiar, S.; Chieppe, A. O.; Bispo de Filippis, A. M.

10.1101/661868 — microbiology — Posted on 2019-11-04

3216 COSS: A fast and user-friendly tool for spectral library searching

Shiferaw, G. A.; Vandermarliere, E.; Hulstaert, N.; Gabriels, R.; Martens, L.; Volders, P.-J.

10.1101/640458 — bioinformatics — Posted on 2019-11-04

3217 Topoisomerase VI participates in an insulator-like function that prevents H3K9me2 spreading into euchromatic islands

Meteignier, L.-V.; Lecampion, C.; Velay, F.; Vriet, C.; Dimnet, L.; Terese, M.; Rougee, M.; Breuer, C.; Soubigout-Taconnat, L.; Sugimoto, K.; Barneche, F.; Laloi, C.

10.1101/829416 — plant biology — Posted on 2019-11-04

3218 Dual-site TMS demonstrates causal functional connectivity between the left and right posterior temporal sulci during facial expression recognition.

Sliwinska, M. W.; Elson, R.; Pitcher, D.

10.1101/804971 — neuroscience — Posted on 2019-11-04

3219 Unique allometry of group size and collective brain mass in humans and primates relative to other mammals

Hamilton, M. J.; Walker, R. S. J.

10.1101/829366 — ecology — Posted on 2019-11-04

3220 Resistome diversity in bovine clinical mastitis microbiome, a signature concurrence

Hoque, M. N.; Istiaq, A.; Clement, R. A.; Gibson, K. M.; Saha, O.; Islam, O. K.; Abir, R. A.; Sultana, M.; Siddiki, A. Z.; Crandall, K. A.; Hossain, M. A.

10.1101/829283 — microbiology — Posted on 2019-11-04

3221 iTRAQ-based proteomic and phosphoproteomic analyses of STRIPAK mutants from the fungus Sordaria macrospora identifies a conserved serine phosphorylation site in PAK kinase CLA4 to be important for sexual development and polarized growth

Märker, R.; Blank-Landeshammer, B.; Beier-Rosberger, A.; Sickmann, A.; Kück, U.

10.1101/828111 — genetics — Posted on 2019-11-04

3222 Individual and concurrent effects of drought and chilling stresses on morpho-physiological characteristics and oxidative metabolism of maize cultivars

Hussain, H. A.; Shengnan, M.; Hussain, S.; Ashraf, U.; Zhang, Q.; Ahmad Anjum, S.; Ali, I.; Wang, L.

10.1101/829309 — plant biology — Posted on 2019-11-04

3223 Comparative analysis of chemically and biologically synthesized iron oxide nanoparticles against Leishmania tropica

ul Ain, Q. A.; Islam, A.; Nadhman, A.

10.1101/829408 — plant biology — Posted on 2019-11-04

3224 Formal string instrument training in a class setting enhances cognitive and sensorimotor development of primary school children

James, C. E.; Zuber, S.; Dupuis-Lozeron, E.; Abdili, L.; Gervaise, D.; Kliegel, M.

10.1101/829077 — neuroscience — Posted on 2019-11-04

3225 The unique genome architecture of the devastating West African cacao black pod pathogen Phytophthora megakarya

Morales-Cruz, A.; Ali, S. S.; Minio, A.; Figueroa-Balderas, R.; Garcia, J. F.; Kasuga, T.; Puig, A. S.; Marelli, J.-P.; Bailey, B. A.; Cantu, D.

10.1101/826636 — genomics — Posted on 2019-11-04

3226 Brainstem organoids from human pluripotent stem cells contain neural crest population

10.1101/829275 — developmental biology — Posted on 2019-11-04

3227 Recurrent loss of abaA, a master regulator of asexual development in filamentous fungi, correlates with changes in genomic and morphological traits

Mead, M. E.; Borowsky, A. T.; Joehnk, B.; Steenwyk, J. L.; Shen, X.-X.; Sil, A.; Rokas, A.

10.1101/829465 — evolutionary biology — Posted on 2019-11-04

3228 DEK influences the trade-off between growth and arrest via H2A.Z-nucleosomes in Arabidopsis

Brestovitsky, A.; Ezer, D.; Waidmann, S.; Maslen, S. L.; Balcerowicz, M.; Cortijo, S.; Charoensawan, V.; Martinho, C.; Rhodes, D.; Jonak, C.; Wigge, P. A.

10.1101/829226 — plant biology — Posted on 2019-11-04

3229 Mating enhances immune function of Drosophila melanogaster populations against bacterial pathogens

Bansal, N.; Shit, B.; Aparajita, ; Hegde, T.; Dutta, R.; Prasad, N. G.

10.1101/823211 — evolutionary biology — Posted on 2019-11-04

3230 Afrotropical Tree Communities May Have Distinct Responses to Forecasted Climate Change

Nunez, C. L.; Clark, J. S.; Poulsen, J. R.

10.1101/823724 — ecology — Posted on 2019-11-04

3231 MapCell: Learning a comparative cell type distance metric with Siamese neural nets with applications towards cell-types identification across experimental datasets

Koh, W.; Hoon, S.

10.1101/828699 — bioinformatics — Posted on 2019-11-04

3232 Minimal phenotyping yields GWAS hits of reduced specificity for major depression

Cai, N.; A. Revez, J. A.; Adams, M. J.; Andlauer, T. F. M.; Breen, G.; Byrne, E. M.; Clarke, T.-K.; Forstner, A. J. J.; Grabe, H. J. J.; Hamilton, S. P.; Levinson, D. F.; Lewis, C. M.; Lewis, G.; Martin, N. G.; Milaneschi, Y.; Mors, O.; Muller-Myhsok, B.; Penninx, B. W. W. J. H.; Perlis, R. H.; Pistis, G.; Potash, J. B.; Preisig, M.; Shi, J.; Smoller, J. W.; Streit, F.; Tiemeier, H.; Uher, R.; Van der Auwera, S.; Viktorin, A.; Weissman, M. M.; MDD Working Group of the Psychiatric Genomics Cons, ; Kendler, K. S.; Flint, J.

10.1101/440735 — genetics — Posted on 2019-11-04

3233 Disturbance Sensitivity Shapes Patterns of Tree Species Distribution in Afrotropical Lowland Rainforests More Than Climate or Soil

Nunez, C. L.; Poulsen, J. R.; Clark, J. S.

10.1101/823203 — ecology — Posted on 2019-11-04

3234 Sample demultiplexing, multiplet detection, experiment planning and novel cell type verification in single cell sequencing

Xin, H.; Yan, Q.; Jiang, Y.; Lian, Q.; Luo, J.; Erb, C.; Duerr, R.; Chen, K.; Chen, W.

10.1101/828483 — bioinformatics — Posted on 2019-11-04

3235 A versatile tiling light sheet microscope for cleared tissue imaging

Gao, L.

10.1101/829267 — bioengineering — Posted on 2019-11-04

3236 ATP Binding Cassette Proteins ABCG37 and ABCG33 are required for potassium-independent cesium uptake in Arabidopsis roots

Ashraf, M. A.; Kumagai, S.; Ito, K.; Sugita, R.; Tanoi, K.; Rahman, A.

10.1101/823815 — plant biology — Posted on 2019-11-04

3237 Neuro-computational account of arbitration between imitation and emulation during human observational learning

Charpentier, C. J.; Iigaya, K.; O'Doherty, J. P.

10.1101/828723 — neuroscience — Posted on 2019-11-04

3238 High complexity and degree of genetic variation in Brettanomyces bruxellensis population

Gounot, J.-S.; Neuveglise, C.; Freel, K. C.; Devillers, H.; Piskur, J.; Friedrich, A.; Schacherer, J.

10.1101/826990 — genomics — Posted on 2019-11-04

3239 Quantitative translation of dog-to-human aging by conserved remodeling of epigenetic networks

Wang, T.; Ma, J.; Hogan, A. N.; Fong, S.; Licon, K.; Tsui, B.; Kreisberg, J. F.; Adams, P. D.; Carvunis, A.-R.; Bannasch, D.; Ostrander, E. A.; Ideker, T.

10.1101/829192 — evolutionary biology — Posted on 2019-11-04

3240 Variation in the life history strategy of cells underlies tumor’s functional diversity

Lu, X.; Li, T.; Liu, J.; Feng, J.; Liu, Z.; Liu, S.; Zhang, M.; Zhang, Y.; Hou, Y.; Wu, D.; Li, C.; Chen, Y.-B.; Wu, C.-I.; Chen, H.

10.1101/829135 — evolutionary biology — Posted on 2019-11-04

3241 Investigation of DPPC liposomes reveals their capability to entrap Aroclor 1260, an emerging environmental pollutant

Lozano, A.; Rieth, M. D.

10.1101/829218 — biophysics — Posted on 2019-11-04

3242 Prefrontal deep projection neurons enable cognitive flexibility via persistent feedback monitoring

Spellman, T.; Svei, M.; Liston, C.

10.1101/828590 — neuroscience — Posted on 2019-11-04

3243 Differential effects of ethanol on behavior and GABAA receptor subunit expression in zebrafish (Danio rerio) with alternative stress coping styles

Goodman, A. C.; Wong, R. Y.

10.1101/829515 — neuroscience — Posted on 2019-11-04

3244 Transformation of population code from dLGN to V1 facilitates linear decoding

Cayco-Gajic, N. A.; Durand, S.; Buice, M.; Iyer, R.; Reid, C.; Zylberberg, J.; Shea-Brown, E.

10.1101/826750 — neuroscience — Posted on 2019-11-04

3245 How do thalamocortical connections shape causal structure among resting state brain networks during aging?

Das, M.; Singh, V.; Banerjee, A.; Roy, D.

10.1101/827451 — neuroscience — Posted on 2019-11-04

3246 Septal GABAergic Inputs to CA1 Govern Contextual Memory Retrieval

Sans-Dublanc, A.; Razzauti, A.; Desikan, S.; Pascual, M.; de la Rocha, J.; Monyer, H.; Sindreu, C.

10.1101/824748 — neuroscience — Posted on 2019-11-04

3247 Stability of cortical synapses across sleep and wake

Cary, B. A.; Turrigiano, G. G.

10.1101/829234 — neuroscience — Posted on 2019-11-04

3248 Midfrontal theta phase coordinates behaviorally relevant brain computations during cognitive control

Duprez, J.; Gulbinaite, R.; Cohen, M. X.

10.1101/502716 — neuroscience — Posted on 2019-11-04

3249 A data-driven approach to the automated mapping of functional brain topographies across species

Pauli, W. M.

10.1101/412114 — neuroscience — Posted on 2019-11-04

3250 A novel microRNA-based strategy to expand the differentiation potency of stem cells

Salazar-Roa, M.; Trakala, M.; Alvarez-Fernandez, M.; Valdes-Mora, F.; Zhong, C.; Munoz, J.; Yu, Y.; Peters, T. J.; Grana Castro, O.; Serrano, R.; Zapatero-Solana, E.; Abad, M.; Bueno, M. J.; Gomez de Cedron, M.; Fernandez-Piqueras, J.; Serrano, M.; Blasco, M. A.; Wang, D.-Z.; Clark, S. J.; Izpisua Belmonte, J. C.; Ortega, S.; Malumbres, M.

10.1101/826446 — cell biology — Posted on 2019-11-04

3251 Mathematical modeling of the protective coloration of animals with usage of parameters of diversity and evenness

Bespalov, Y.; Nosov, K.; Levchenko, O.; Grigoriev, O.; Hnoievyi, I.; Kabalyants, P.

10.1101/822999 — systems biology — Posted on 2019-11-04

3252 Prenatal exposure to perfluoroalkyl substances modulates neonatal serum phospholipids, increasing risk of type 1 diabetes

McGlinchey, A.; Sinioja, T.; Lamichhane, S.; Bodin, J.; Siljander, H.; Dickens, A. M.; Geng, D.; Carlsson, C.; Duberg, D.; Ilonen, J.; Virtanen, S. M.; Dirven, H.; Bentsen, H. F.; Zimmer, K.; Nygaard, U. C.; Oresic, M.; Knip, M.; Hyotylainen, T.

10.1101/588350 — molecular biology — Posted on 2019-11-04

3253 Discovery of compounds inhibiting the ADP-ribosyltransferase activity of pertussis toxin

Ashok, Y.; Miettinen, M.; de Oliveira, D. K. H.; Tamirat, M. Z.; Näreoja, K.; Tiwari, A.; Hottiger, M. O.; Johnson, M. S.; Lehtiï, L.; Pulliainen, A.

10.1101/637801 — microbiology — Posted on 2019-11-04

3254 Reinforcement Learning for Bio-Retrosynthesis

Koch, M.; Duigou, T.; Faulon, J.-L.

10.1101/800474 — bioinformatics — Posted on 2019-11-04

3255 Cholesterol is a strong promoter of an α-Synuclein membrane binding mode that accelerates oligomerization

Jakubec, M.; Barias, E.; Furse, S.; Govasli, M. L.; George, V.; Turcu, D.; Iashchishyn, I.; Morozova-Roche, L. A.; Halskau, O.

10.1101/725762 — molecular biology — Posted on 2019-11-03

3256 Fine-tuning Polygenic Risk Scores with GWAS Summary Statistics

Zhao, Z.; Yi, Y.; Wu, Y.; Zhong, X.; Lin, Y.; Hohman, T. J.; Fletcher, J.; Lu, Q.

10.1101/810713 — genetics — Posted on 2019-11-03

3257 Testing the basic tenet of the molecular clock and neutral theory by using ancient proteomes

Liu, T.; Huang, S.

10.1101/821736 — evolutionary biology — Posted on 2019-11-03

3258 Novel sampling strategies and a coarse-grained score function for docking homomers, flexible heteromers, and oligosaccharides using Rosetta in CAPRI Rounds 37-45

Roy Burman, S. S.; Nance, M. L.; Jeliazkov, J. R.; Labonte, J. W.; Lubin, J. H.; Biswas, N.; Gray, J. J.

10.1101/749317 — biophysics — Posted on 2019-11-03

3259 High-throughput multiplexed tandem repeat genotyping using targeted long-read sequencing

Ganesamoorthy, D.; Yan, M.; Murigneux, V.; Zhou, C.; Cao, M. D. D.; Duarte, T. P.; Coin, L. J.

10.1101/673251 — genomics — Posted on 2019-11-03

3260 A genome-wide almanac of co-essential modules assigns function to uncharacterized genes

Wainberg, M.; Kamber, R. A.; Balsubramani, A.; Meyers, R. M.; Sinnott-Armstrong, N.; Hornburg, D.; Jiang, L.; Chan, J.; Jian, R.; Gu, M.; Shcherbina, A.; Dubreuil, M. M.; Spees, K.; Snyder, M. P.; Kundaje, A.; Bassik, M. C.

10.1101/827071 — genomics — Posted on 2019-11-03

3261 Early Treatment Response in First Episode Psychosis: A 7-Tesla Magnetic Resonance Spectroscopic Study of Glutathione and Glutamate

Dempster, K.; Jeon, P.; MacKinley, M.; Williamson, P.; Theberge, J.; Palaniyappan, L.

10.1101/828608 — neuroscience — Posted on 2019-11-03

3262 Single-molecule nanopore sensing of actin dynamics and drug binding

Wang, X.; Wilkinson, M. D.; Lin, X.; Ren, R.; Willison, K.; Ivanov, A. P.; Baum, J.; Edel, J. B.

10.1101/829150 — biophysics — Posted on 2019-11-03

3263 HIV-1 Rev interacts with HERV-K RcREs present in the human genome and promotes export of unspliced HERV-K proviral RNA

Gray, L. R.; Jackson, R. E.; Jackson, P. E. H.; Bekiranov, S. A.; Rekosh, D.; Hammmarskjold, M.-L. A.

10.1101/822619 — cell biology — Posted on 2019-11-03

3264 Resting-state network topology and planning ability in healthy adults

Vriend, C.; Wagenmakers, M.; van den Heuvel, O. A.; van der Werf, Y. D.

10.1101/696856 — neuroscience — Posted on 2019-11-03

3265 From modules to networks: A systems-level analysis of the bacitracin stress response in Bacillus subtilis

Piepenbreier, H.; Sim, A.; Kobras, C. M.; Radeck, J.; Mascher, T.; Gebhard, S.; Fritz, G.

10.1101/827469 — systems biology — Posted on 2019-11-03

3266 A novel microRNA-based strategy to expand the differentiation potency of stem cells

10.1101/826446 — cell biology — Posted on 2019-11-03

3267 MutateX: an automated pipeline for in-silico saturation mutagenesis of protein structures and structural ensembles

Tiberti, M.; Terkelsen, T.; Canter Cremers, T.; Di Marco, M.; da Piedade, I.; Maiani, E.; Papaleo, E.

10.1101/824938 — bioinformatics — Posted on 2019-11-03

3268 DNB-Based On-Chip Motif Finding (DocMF): a High-Throughput Method to Profile Different Types of Protein-DNA Interactions

Li, Z.; Wang, X.; Xu, D.; Zhang, D.; Wang, D.; Dai, X.; Wang, Q.; Li, Z.; Gu, Y.; Ouyang, W.; Zhao, S.; Huang, B.; Gong, J.; Zhao, J.; Chen, A.; Shen, Y.; Dong, Y.; Zhang, W.; Xu, X.; Xu, C.; Jiang, Y.

10.1101/827428 — molecular biology — Posted on 2019-11-02

3269 Gamma oscillations weaken with age in healthy elderly in human EEG

Murty, D. V. P. S.; Manikandan, K.; Kumar, W. S.; Ramesh, R. G.; Purokayastha, S.; Javali, M.; Rao, N. P.; Ray, S.

10.1101/696781 — neuroscience — Posted on 2019-11-02

3270 Heat stress induces ferroptosis in a photosynthetic prokaryote.

Aguilera, A.; Berdun, F.; Bartoli, C.; Steelheart, C.; Alegre, M.; Salerno, G.; Pagnussat, G.; Martin, M. V.

10.1101/828293 — microbiology — Posted on 2019-11-02

3271 Deletion of Stk11 and Fos in BLA projection neurons alters their intrinsic excitability and impairs formation of long-term aversive memory

Levitan, D.; Liu, C.; Lin, J.-Y.; wachutka, J.; Marrero-Garcia, Y.; Beltrame, E.; Shima, Y.; Ali Marandi Ghoddousi, R.; Yang, T.; Katz, D. B.; Nelson, S. B.

10.1101/787325 — neuroscience — Posted on 2019-11-02

3272 An NMDA-R mediated short-term memory resistant to anesthesia in adult Danio rerio

Rajan, G.; Joseph, J.

10.1101/795351 — neuroscience — Posted on 2019-11-02

3273 Differential modes of orphan subunit recognition for the WRB/CAML complex

Inglis, A. J.; Page, K. R.; Guna, A.; Voorhees, R. M.

10.1101/828228 — molecular biology — Posted on 2019-11-02

3274 Genomic data enables genetic evaluation using data recorded on LMIC smallholder dairy farms

Powell, O. M.; Mrode, R.; Gaynor, R. C.; Johnsson, M.; Gorjanc, G.; Hickey, J. M.

10.1101/827956 — genetics — Posted on 2019-11-02

3275 The Mosquito Electrocuting Trap As An Exposure-Free Method For Measuring Human Biting Rates By Aedes Mosquito Vectors

Ortega-Lopez, L. D.; Pondeville, E. D.; Kohl, A.; Leon, R.; Pazmino Betancourth, M.; Almire, F.; Torres Valencia, S.; Saldarriaga, S.; Mirzai, N.; Ferguson, H. M.

10.1101/774596 — ecology — Posted on 2019-11-02

3276 Divergent population recovery trajectories following sex-biased perturbation in life history traits

Goto, D.; Hamel, M. J.; Hammen, J. J.; Rugg, M. L.; Pegg, M. A.; Forbes, V. E.

10.1101/828244 — ecology — Posted on 2019-11-02

3277 A genomic dating tool for ancient genomes resolves the origins of hundreds of Eurasian genomes

Esposito, U.; Holland, G.; Alshehab, G.; Dobre, A. M.; Pirooznia, M.; Brimacombe, C.; Elhaik, E.

10.1101/828962 — genomics — Posted on 2019-11-02

3278 3′-UTR shortening contributes to subtype-specific cancer growth by breaking stable ceRNA crosstalk of housekeeping genes

Fan, Z.; Kim, S.; Bai, Y.; Oesterreich, S.; Diergaarde, B.; Park, H. J.

10.1101/601526 — cancer biology — Posted on 2019-11-02

3279 Surface protein imputation from single cell transcriptomes by deep neural networks

Zhou, Z.; Wang, J.; Ye, C.; Zhang, N.

10.1101/671180 — bioinformatics — Posted on 2019-11-02

3280 Calling differential DNA methylation at cell-type resolution: an objective status-quo

Jing, H.; Zheng, S.; Breeze, C. E.; Beck, S.; Teschendorff, A.

10.1101/822940 — bioinformatics — Posted on 2019-11-02

3281 Mathematical modeling the protective coloration of animals with usage of parameters of diversity and evenness

Bespalov, Y.; Nosov, K.; Levchenko, O.; Grigoriev, O.; Hnoievyi, I.; Kabalyants, P.

10.1101/822999 — systems biology — Posted on 2019-11-02

3282 Inhibition of jasmonate-mediated plant defences by the fungal metabolite higginsianin B

Dallery, J.-F.; Zimmer, M.; Halder, V.; Suliman, M.; Pigne, S.; Le Goff, G.; Gianniou, D. D.; Trougakos, I. P.; Ouazzani, J.; Gasperini, D.; O'Connell, R. J.

10.1101/651562 — plant biology — Posted on 2019-11-02

3283 Dynamic macromolecular composition and high exudation rates in Prochlorococcus

Soth-Rosenberg, D.; Aharonovich, D.; Omta, A.-W.; Follows, M. J.; Sher, D. J.

10.1101/828897 — microbiology — Posted on 2019-11-02

3284 Generating and testing ecological hypotheses at the pondscape with environmental DNA metabarcoding: a case study on a threatened amphibian

Harper, L. R.; Lawson Handley, L.; Hahn, C.; Boonham, N.; Rees, H. C.; Lewis, E.; Adams, I. P.; Brotherton, P.; Phillips, S.; Hänfling, B.

10.1101/278309 — ecology — Posted on 2019-11-02

3285 Crown defoliation decreases reproduction and wood growth in a marginal European beech population.

Oddou-Muratorio, S.; Petit, C.; Journe, V.; Lingrand, M.; Magdalou, J.-A.; Hurson, C.; Garrigue, J.; Davi, H.; Magnanou, E.

10.1101/474874 — ecology — Posted on 2019-11-02

3286 Integrated computational and experimental identification of p53, KRAS and VHL mutant selection associated with CRISPR-Cas9 editing

Sinha, S.; Barbosa, K. O.; Cheng, K.; Leiserson, M. D.; Wilson, D. M.; Ryan, B. M.; Ronai, Z. A.; Lee, J. S.; Deshpande, A.; Ruppin, E.

10.1101/407767 — cancer biology — Posted on 2019-11-02

3287 Quantitative classification of chromatin dynamics reveals regulators of intestinal stem cell differentiation

Raab, J. R.; Tulasi, D. Y.; Wager, K. E.; Morowitz, J. M.; Magness, S. T.; Gracz, A. D.

10.1101/637181 — genomics — Posted on 2019-11-02

3288 Functional role of respiratory supercomplexes in mice: segmentation of the Qpool and SCAF1

Calvo, E.; Cogliati, S.; Hernansanz-Agustin, P.; Loureiro-Lopez, M.; Guaras, A.; Casuso, R. A.; Garcia-Marques, F.; Acin-Perez, R.; Marti-Mateos, Y.; Silla-Castro, J. C.; Carro-Alvarellos, M.; Huertas, J. R.; Vazquez, J.; Enriquez, J. A.

10.1101/826115 — molecular biology — Posted on 2019-11-02

3289 Motivated for near impossibility: How task type and reward modulates intrinsic motivation and the striatal activation for an extremely difficult task.

Murayama, K.; Sakaki, M.; Meliss, S.; Yomogida, Y.; Matsumori, K.; Sugiura, A.; Matsumoto, M.; Matsumoto, K.

10.1101/828756 — neuroscience — Posted on 2019-11-02

3290 Benefits of motor imagery practice during arm-immobilization on the sensorimotor cortical networks and sleep features

Debarnot, U.; Perrault, A. A.; Sterpenich, V. A.; Legendre, G.; Huber, C.; Guillot, A.; Schwartz, S.

10.1101/828889 — neuroscience — Posted on 2019-11-02

3291 Detection of a novel African-lineage-like Zika virus naturally infecting free-living neotropical primates in Southern Brazil

Almeida, P. R.; Ehlers, L. P.; Demoliner, M.; Antunes Eisen, A. K.; Girardi, V.; Lorenzo, C.; Viezzer Bianchi, M.; Mello, L. S.; Pavarini, S. P.; Driemeier, D.; Sonne, L.; Spilki, F. R.

10.1101/828871 — microbiology — Posted on 2019-11-02

3292 The dynamic equilibrium of nascent and parental MCMs safeguards replicating genomes

Sedlackova, H.; Rask, M.-B. D.; Gupta, R.; Choudhary, C.; Somyajit, K.; Lukas, J.

10.1101/828954 — cell biology — Posted on 2019-11-02

3293 Fitness decline in hatchery-enhanced salmon populations is manifested by global warming

Kitada, S.; Kishino, H.

10.1101/828780 — evolutionary biology — Posted on 2019-11-02

3294 Interplay of bacterial membrane vesicle and host lipid physicochemical parameters during host-bacterial membrane vesicle interaction

Prince, A.; Tiwari, A.; Mandal, T.; Sharma, K.; Kanik, N.; Sinha, D. K.; Saleem, M.

10.1101/827519 — biochemistry — Posted on 2019-11-02

3295 The relationship between microbial biomass and disease in the Arabidopsis thaliana phyllosphere

Karasov, T. L.; Neumann, M.; Duque-Jaramillo, A.; Kersten, S.; Bezrukov, I.; Schroeppel, B.; Symeonidi, E.; Lundberg, D. S.; Regalado, J.; Shirsekar, G.; Bergelson, J.; Weigel, D.

10.1101/828814 — plant biology — Posted on 2019-11-02

3296 Consequences of hatchery stocking: Lessons from Japan

Kitada, S.

10.1101/828798 — ecology — Posted on 2019-11-02

3297 Lymphatic metastases have more diverse roots than distant metastases

Reiter, J. G.; Nagpal, S.; Naxerova, K.

10.1101/828913 — cancer biology — Posted on 2019-11-02

3298 Global kinome silencing combined with 3D invasion screening of the tumor microenvironment identifies fibroblast-expressed PIK3Cδ involvement in triple-negative breast cancer progression

Gagliano, T.; Shah, K.; Gargani, S.; Lao, L.; Alsaleem, M.; Chen, J.; Ntafis, V.; Huang, P.; Ditsiou, A.; Vella, V.; Yadav, K.; Bienkowska, K.; Bresciani, G.; Kang, K.; Li, L.; Carter, P.; Benstead-Hum, G.; O'Hanlon, T.; Dean, M.; Pearl, F. M. G.; Lee, S.-C.; Rakha, E. A.; Green, A. R.; Kontoyiannis, D. L.; Song, E.; Stebbing, J.; Giamas, G.

10.1101/822049 — cancer biology — Posted on 2019-11-02

Medvedeva, A.; Saw, R.; Sirota, M.; Fuggetta, G.; Galli, G.

10.1101/828855 — neuroscience — Posted on 2019-11-02

3300 The Spectral Sensitivity of Black and White

Patterson, S. S.; Neitz, M.; Neitz, J.

10.1101/829051 — neuroscience — Posted on 2019-11-02

3301 Machine Learning Reveals Spatiotemporal Genome Evolution in Asian Rice Domestication

Ohyanagi, H.; Goto, K.; Negrao, S.; Wing, R.; Tester, M.; McNally, K.; Bajic, V.; Mineta, K.; Gojobori, T.

10.1101/829168 — plant biology — Posted on 2019-11-02

3302 Glutamate and Dysconnection in the Salience Network: Neurochemical, Effective-connectivity, and Computational Evidence in Schizophrenia

Limongi, R.; Jeon, P.; Mackinley, M.; Das, T.; Dempster, K.; Theberge, J.; Bartha, R.; Wong, D.; Palaniyappan, L.

10.1101/828558 — neuroscience — Posted on 2019-11-02

3303 Microbial ecology of Atlantic salmon, Salmo salar, hatcheries: impacts of the built environment on fish mucosal microbiota

Minich, J. J.; Jantawongsri, K.; Johnston, C.; Bowie, K.; Bowman, J. P.; Knight, R.; Nowak, B.; Allen, E. E.

10.1101/828749 — microbiology — Posted on 2019-11-02

3304 Resolvin D-series regulates Phospholipase D both during inflammation and resolution by modulating phagocyte functions

Ganesan, R.; Henkels, K. M.; Shah, K.; Rosa, X. D.; Libreros, S.; Cheemarla, N. R.; Serhan, C. N.; Cambronero, J. G.

10.1101/827295 — immunology — Posted on 2019-11-02

3305 Mapping the micro-proteome of the nuclear lamina and lamin associated domains

Cutler, J. A.; Wong, X.; Hoskins, V. E.; Gordon, M.; Madugundu, A. K.; Pandey, A.; Reddy, K. L.

10.1101/828210 — genomics — Posted on 2019-11-02

3306 Genomic data enables genetic evaluation using data recorded on LMIC smallholder dairy farms

Powell, O. M.; Mrode, R.; Gaynor, R. C.; Johnsson, M.; Gorjanc, G. M.; Hickey, J. M.

10.1101/827956 — genetics — Posted on 2019-11-02

3307 Low-disturbance farming regenerates healthy critical zone towards sustainable agriculture

Deng, F.; Wang, H.; Xie, H.; Bao, X.; He, H.; Zhang, X.; Liang, C.

10.1101/828673 — ecology — Posted on 2019-11-02

3308 Geographic assessment of cancer genome profiling studies

Carrio Cordo, P.; Acheson, E.; Baudis, M.

10.1101/827683 — bioinformatics — Posted on 2019-11-02

3309 Selective protein O-GlcNAcylation in cells by a proximity-directed O-GlcNAc transferase

Ramirez, D. H.; Aonbangkhen, C.; Wu, H.-Y.; Naftaly, J. A.; Tang, S.; O'Meara, T. R.; Woo, C. M.

10.1101/828921 — biochemistry — Posted on 2019-11-02

3310 Disruption of the HIV-1 Envelope allosteric network blocks CD4-induced rearrangements

Henderson, R.; Lu, M.; Zhou, Y.; Mu, Z.; Parks, R.; Han, Q.; Hsu, A. L.; Carter, E.; Blanchard, S. C.; Edwards, R.; Wiehe, K.; Saunders, K. O.; Borgnia, M. J.; Bartesaghi, A.; Mothes, W.; Haynes, B. F.; Acharya, P.; Alam, S. M.

10.1101/827857 — biochemistry — Posted on 2019-11-02

3311 Structural robustness affects the engineerability of aminoacyl-tRNA synthetases for genetic code expansion

Grasso, K. T.; Yeo, M. J. R.; Hillenbrand, C. M.; Ficaretta, E. D.; Italia, J. S.; Huang, R. L.; Chatterjee, A.

10.1101/829028 — synthetic biology — Posted on 2019-11-02

3312 Phylodynamics of sunflower chlorotic mottle virus, a re-emerging pathosystem

Cabrera Mederos, D.; Torres, C.; Bejerman, N.; Trucco, V.; Lenardon, S.; Leiva Mora, M.; Giolitti, F.

10.1101/829119 — plant biology — Posted on 2019-11-02

3313 Understory light quality affects leaf pigments and leaf phenology in different plant functional types

Brelsford, C. C.; Trasser, M.; Paris, T.; Hartikainen, S. M.; Robson, T. M.

10.1101/829036 — plant biology — Posted on 2019-11-02

3314 Illuminance affects epidemiological parameters of banana Yellow Sigatoka in Brazil

Santana-Filho, D. M.; Silva, M. C.; Souza, J. T.; Cordeiro, Z. J.; Rocha, H. S.; Laranjeira, F. F.

10.1101/828848 — microbiology — Posted on 2019-11-02

3315 Androgen Receptor Signaling Regulates the Transcriptome of Prostate Cancer Cells by Modulating Global Alternative Splicing

Shah, K.; Gagliano, T.; Garland, L.; O'Hanlon, T.; Bortolotti, D.; Gentili, V.; Rizzo, R.; Giamas, G.; Dean, M.

10.1101/828707 — cancer biology — Posted on 2019-11-02

3316 Longest protein, longest transcript or most expression, for accurate gene reconstruction of transcriptomes?

Gilbert, D. G.

10.1101/829184 — bioinformatics — Posted on 2019-11-02

3317 Batch cultivation of non-transgenic males suitable for SIT programs

Das, S.; Maselko, M.; Upadhyay, A.; Smanski, M.

10.1101/828822 — synthetic biology — Posted on 2019-11-02

3318 Elucidating cryptic sympatric speciation in terrestrial orchids

Pansarin, E.; Ferreira, A. W. C.

10.1101/828491 — plant biology — Posted on 2019-11-02

3319 qPaLM: quantifying occult microarchitectural relationships in histopathological landscapes

Kendall, T. J.; Duff, C. M.; Thomson, A. M.; Iredale, J. P.

10.1101/828004 — pathology — Posted on 2019-11-02

3320 Local Glutamate-Mediated Dendritic Plateau Potentials Change the State of the Cortical Pyramidal Neuron

Gao, P. P.; Graham, J. W.; Zhou, W.-L. L.; Jang, J.; Angulo, S.; Dura-Bernal, S.; Hines, M.; Lytton, W. W.; Antic, S. D.

10.1101/828582 — neuroscience — Posted on 2019-11-02

3321 Single cell transcriptomic analysis revealed long-lasting adverse effects of prenatal tamoxifen administration on neurogenesis in prenatal and adult brains

Lee, C.-M.; Zhou, L.-Q.; Liu, J.-P.; Shi, J.-Y.; Geng, Y.-N.; Wang, J.-R.; Su, X.-J.; Barad, N.; Wang, J.-B.; Sun, Y.; Lin, Q.

10.1101/811893 — neuroscience — Posted on 2019-11-02

3322 Failure to engage the TPJ-pSTS during naturalistic scene processing in schizophrenia

Patel, G. H.; Arkin, S. C.; Ruiz-Betancourt, D.; Plaza, F. I.; Mirza, S. A.; Vieira, D. J.; Strauss, N. E.; Klim, C. C.; Sanchez-Pena, J. P.; Bartel, L. P.; Grinband, J.; Martinez, A.; Berman, R. A.; Ochsner, K. N.; Leopold, D. A.; Javitt, D. C.

10.1101/828988 — neuroscience — Posted on 2019-11-02

3323 Regulation of yeast RPL22B splicing depends on intact pre-mRNA context of the intron

Abrhamova, K.; Folk, P.

10.1101/814301 — molecular biology — Posted on 2019-11-02

3324 Disinfection exhibits systematic impacts on the drinking water microbiome.

Dai, Z.; Sevillano, M. C.; Calus, S. T.; Bautista-de los Santos, Q. M.; Eren, A. M.; van der Wielen, P. W. J. J.; Ijaz, U. Z.; Pinto, A. J.

10.1101/828970 — microbiology — Posted on 2019-11-02

3325 Ebselen inhibits mycobacterial ESX-1 secretion through modification of EccA1

Osman, M. M.; Pinckert, M. L.; Peak-Chew, S.; Troll, M. A.; Conrad, W. H.; Ramakrishnan, L.

10.1101/828574 — microbiology — Posted on 2019-11-02

3326 Human NK cell deficiency as a result of biallelic mutations in MCM10

Mace, E.; Paust, S.; Conte, M. I.; Baxley, R. M.; Schmit, M.; Mukherjee, M.; Pezzi, A. E.; Chmielowiec, J.; Tatineni, S.; Chinn, I.; Akdemir, Z. C.; Jhangiani, S. N.; Muzny, D. M.; Stray-Pedersen, A.; Bradley, R. E.; Moody, M.; Connor, P. P.; Heaps, A.; Steward, C.; Banerjee, P. P.; Gibbs, R. A.; Borowiak, M.; Lupski, J. R.; Jolles, S. R.; Bielinsky, A.; Orange, J.

10.1101/825554 — immunology — Posted on 2019-11-02

3327 Pregnancy alters innate immune responses to Zika virus infection in the genital tract

Lesteberg, K. E.; Fader, D. S.; Beckham, J. D.

10.1101/828731 — immunology — Posted on 2019-11-02

3328 Immunoglobulin gene conversion identification and analysis

Bonissone, S. R.

10.1101/828434 — immunology — Posted on 2019-11-02

3329 A genomic dating tool for ancient genomes resolves the origins of hundreds of Eurasian genomes

Esposito, U.; Holland, G.; Alshehab, G.; Dobre, A. M.; Pirooznia, M.; Brimacombe, C.; Elhaik, E.

10.1101/828962 — genomics — Posted on 2019-11-02

3330 5’ splice site GC>GT variants differ from GT>GC variants in terms of their functionality and pathogenicity

Lin, J.-H.; Masson, E.; Boulling, A.; Hayden, M.; Cooper, D. N.; Ferec, C.; Liao, Z.; Chen, J.-M.

10.1101/829010 — genetics — Posted on 2019-11-02

3331 Stochastic simulation platform for visualization and estimation of transcriptional kinetics

Gorin, G.; Wang, M.; Golding, I.; Xu, H.

10.1101/825869 — biophysics — Posted on 2019-11-02

3332 Predicting glaucoma prior to its onset using deep learning

Thakur, A.; Goldbaum, M.; Yousefi, S.

10.1101/828681 — bioengineering — Posted on 2019-11-02

3333 Concepts for structured illumination microscopy with extended axial resolution through mirrored illumination

Manton, J. D.; Ströhl, F.; Fiolka, R. P.; Kaminski, C.; Rees, E. J.

10.1101/828632 — bioengineering — Posted on 2019-11-02

3334 TRIM14 is a key regulator of the type I interferon response during Mycobacterium tuberculosis infection

Hoffpauir, C. T.; Bell, S. L.; West, K. O.; Jing, T.; Odio-Torres, S.; Cox, J. S.; West, A. P.; Li, P.; Patrick, K. L.; Watson, R. O.

10.1101/828533 — immunology — Posted on 2019-11-02

3335 Identifying Refugia and Barriers to the Spread of A. graminifolia and D. crumenatum in Puerto Rico

Foster, E. A.; Ackerman, J. D.; Falcon, W. L.

10.1101/828517 — ecology — Posted on 2019-11-02

3336 In vivo control of Toxoplasma gondii by zebrafish macrophages

Yoshida, N.; Domart, M.-C.; Yakimovich, A.; Mazon-Moya, M. J.; Collinson, L.; Mercer, J.; Frickel, E.; Mostowy, S.

10.1101/828624 — microbiology — Posted on 2019-11-02

3337 XPRESSyourself: Enhancing, Standardizing, and Automating Ribosome Profiling Computational Analyses Yields Improved Insight into Data

Berg, J. A.; Belyeu, J. R.; Morgan, J. T.; Ouyang, Y.; Bott, A. J.; Quinlan, A. R.; Gertz, J.; Rutter, J.

10.1101/704320 — bioinformatics — Posted on 2019-11-02

3338 Data architecture and visualization for a large-scale neuroscience collaboration

The International Brain Laboratory, ; Bonacchi, N.; Chapuis, G.; Churchland, A. K.; Harris, K. D.; Rossant, C.; Sasaki, M.; Shen, S.; Steinmetz, N. A.; Walker, E. Y.; Winter, O.; Wells, M.

10.1101/827873 — neuroscience — Posted on 2019-11-02

3339 Extensive functional repertoire underpins complex behaviours: insights from Parkinson’s disease

Sorrentino, P.; Rucco, R.; Baselice, F.; De Micco, R.; Tessitore, A.; Hillebrand, A.; Mandolesi, L.; Breakspear, M.; Gollo, L. L.; Sorrentino, G.

10.1101/823849 — neuroscience — Posted on 2019-11-01

3340 AIDE: annotation-assisted isoform discovery with high precision

Li, W. V.; Li, S.; Tong, X.; Deng, L.; Shi, H.; Li, J. J.

10.1101/437350 — bioinformatics — Posted on 2019-11-01

3341 Cusp-artifacts in high order superresolution optical fluctuation imaging

Yi, X.; Weiss, S.

10.1101/545574 — bioengineering — Posted on 2019-11-01

3342 The Escherichia coli Transcriptome Mostly Consists of Independently Regulated Modules

Sastry, A. V.; Gao, Y.; Szubin, R.; Hefner, Y.; Xu, S.; Kim, D.; Choudhary, K. S.; Yang, L.; King, Z. A.; Palsson, B. O.

10.1101/620799 — systems biology — Posted on 2019-11-01

3343 Inference of Population Genetic Structure and High Linkage Disequilibrium AmongAlternaria spp. Collected from Tomato and Potato Using Genotyping by Sequencing

Adhikari, T.; Knaus, B.; Grünwald, N.; Halterman, D.; Louws, F.

10.1101/827790 — genomics — Posted on 2019-11-01

3344 Identification of Potential Dual-Targets Anti-Toxoplasma gondii Compounds Through Structure-Based Virtual Screening and In-Vitro Studies

Salin, N. H.; Noordin, R.; Al-Najjar, B. O.; Kamarulzaman, E. E.; Yunus, M. H.; Karim, I. Z. A.; Nasim, N. N. M.; Zakaria, I. I.; Wahab, H.

10.1101/827774 — biochemistry — Posted on 2019-11-01

3345 The complete mitochondrial genome of endangered Assam Roofed Turtle, Pangshura sylhetensis (Testudines: Geoemydidae): Genomic features and Phylogeny

Kundu, S.; Kumar, V.; Tyagi, K.; Chandra, K.

10.1101/827782 — genomics — Posted on 2019-11-01

3346 Photosynthesis and crop productivity is enhanced by glucose-functionalized fluorescent carbon dots

Swift, T. A.; Fagan, D. T.; Benito-Alifonso, D.; Hill, S.; Lawson, T.; Oliver, T. A. A.; Yallop, M. A.; Galan, M. C. M.; Whitney, H. M.

10.1101/826628 — plant biology — Posted on 2019-11-01

3347 A mathematical dissection of the adaptation of cell populations to fluctuating oxygen levels

Ardaseva, A.; Gatenby, R. A.; Anderson, A. R. A.; Byrne, H. M.; Maini, P. K.; Lorenzi, T.

10.1101/827980 — cancer biology — Posted on 2019-11-01

3348 Impaired Hippocampal-cortical interactions during sleep and memory reactivation without consolidation in a mouse model of Alzheimer’s disease

Benthem, S. D.; Skelin, I.; Moseley, S.; Dixon, J.; Melilli, A.; Molina, L.; McNaughton, B.; Wilber, A.

10.1101/828301 — neuroscience — Posted on 2019-11-01

3349 DeepACSON: Automated White Matter Segmentation

Abdollahzadeh, A.; Belevich, I.; Jokitalo, E.; Sierra, A.; Tohka, J.

10.1101/828541 — neuroscience — Posted on 2019-11-01

3350 IL-17A both initiates (via IFNγ suppression) and limits the pulmonary type 2 immune response to nematode infection

Ajendra, J.; Chenery, A. L.; Parkinson, J. E.; Chan, B. H.; Pearson, S.; Colombo, S. A.; Boon, L.; Grencis, R. K.; Sutherland, T. E.; Allen, J. E.

10.1101/827899 — immunology — Posted on 2019-11-01

3351 The Golgi Glycoprotein MGAT4D is an Intrinsic Protector of Testicular Germ Cells From Mild Heat Stress

Akintayo, A.; Liang, M.; Bartholdy, B.; Batista, F.; Aguilan, J.; Prendergast, J.; Sundaram, S.; Stanley, P.

10.1101/818195 — developmental biology — Posted on 2019-11-01

3352 N-cadherin SPRY motifs bind unconventionally-secreted Fbxo45 and regulate multipolar neuron migration

Na, Y.; Kon, E.; Cao, H.; Jossin, Y.; Cooper, J.

10.1101/828426 — cell biology — Posted on 2019-11-01

3353 Induction of pancreatic tumor-selective ferroptosis through modulation of cystine import

Badgley, M. A.; Kremer, D.; Maurer, H. C.; DelGiorno, K. E.; Lee, H.-J.; Purohit, V.; Sagalovskiy, I.; Ma, A.; Kapillian, J.; Firl, C. E. M.; Decker, A. R.; Sastra, S. A.; Palermo, C. F.; Andrade, L. R.; Sajjakulnukit, P.; Zhang, L.; Tolstyka, Z. P.; Hirschhorn, T.; Lamb, C.; Liu, T.; Gu, W.; Seeley, E. S.; Stone, E.; Georgiou, G.; Manor, U.; Iuga, A.; Wahl, G. M.; Stockwell, B. R.; Lyssiotis, C. A.; Olive, K. P.

10.1101/827972 — cancer biology — Posted on 2019-11-01

3354 Is laterality adaptive? Pitfalls in disentangling the laterality-performance relationship

Paszulewicz, J.; Wolski, P.; Gajdek, M.

10.1101/694968 — neuroscience — Posted on 2019-11-01

3355 Regeneration of dorsal spinal cord neurons after injury via in situ NeuroD1-mediated astrocyte-to-neuron conversion

Puls, B.; Ding, Y.; Pan, M.; Zhang, L.; Forsyth, C.; Metzger, M.; Rana, T.; Ding, X.; Keefe, M.; Cai, A.; Redilla, A.; Lai, M.; He, K.; Bai, Y.; Jiang, M.; Pei, Z.; Li, H.; Chen, G.

10.1101/818823 — neuroscience — Posted on 2019-11-01

3356 Simultaneous analysis of open chromatin, promoter interactions and gene expression in stimulated T cells implicates causal genes for rheumatoid arthritis

Yang, J.; McGovern, A.; Martin, P.; Duffus, K.; Zarrineh, P.; Morris, A. P.; Adamson, A.; Fraser, P.; Rattray, M.; Eyre, S.

10.1101/827923 — genomics — Posted on 2019-11-01

3357 Nutrient sensing; transcriptomic response and regulation of gut motility in an agastric vertebrate

Le, H. T. M. D.; Lie, K. K.; Etayo, A.; Ronnestad, I.; Saele, O.

10.1101/827659 — physiology — Posted on 2019-11-01

3358 CHCHD10 OR CHCHD2 ARE NOT REQUIRED FOR HUMAN MOTOR NEURON DIFFERENTIATION IN VITRO BUT MODIFY SYNAPTIC TRANSCRIPTOMES

Harjuhaahto, S.; Rasila, T. S.; Molchanova, S. M.; Woldegebriel, R.; Kvist, J.; Konovalova, S.; Sainio, M. T.; Pennonen, J.; Ibrahim, H.; Otonkoski, T.; Taira, T.; Ylikallio, E.; Tyynismaa, H.

10.1101/828376 — neuroscience — Posted on 2019-11-01

3359 Attention-dependent preparatory processing of naturalistic narratives is correlated with speech comprehension

Li, J.; Hong, B.; Nolte, G.; Engel, A. K.; Zhang, D.

10.1101/827584 — neuroscience — Posted on 2019-11-01

3360 Culex saltanensis and Culex interfor (Diptera: Culicidae) are susceptible and competent to transmit St. Louis encephalitis virus (Flavivirus: Flaviviridae) in central Argentina.

Beranek, M.; Quaglia, A.; Peralta, G.; Flores, F.; Stein, M.; Diaz, A.; Almiron, W.; Contigiani, M.

10.1101/722579 — microbiology — Posted on 2019-11-01

3361 Genetic Analysis of Osteoblast Activity Identifies Zbtb40 as a Regulator of Osteoblast Activity and Bone Mass

Doolittle, M. L.; Calabrese, G.; Mesner, L.; Godfrey, D. A.; Maynard, R. D.; Farber, C.; Ackert-Bicknell, C. L.

10.1101/828525 — genetics — Posted on 2019-11-01

3362 Inferring punctuated evolution in the learned songs of African sunbirds

McEntee, J. P.; Zhelezov, G.; Werema, C.; Najar, N.; Penalba, J. V.; Mulungu, E.; Mbilinyi, M.; Karimi, S.; Chumakova, L.; Burleigh, J. G.; Bowie, R. C. K.

10.1101/828459 — evolutionary biology — Posted on 2019-11-01

3363 Stability and similarity of the pediatric connectome as developmental outcomes

Vanderwal, T.; Eilbott, J.; Kelly, C.; Woodward, T. S.; Milham, M.; Castellanos, F. X.

10.1101/828137 — neuroscience — Posted on 2019-11-01

3364 Phosphatidylinositol 4-kinase III beta regulates cell shape, migration and focal adhesion number.

Law-Vinh, D.; Bilodeau, P.; Jacobsen, D.; Lee, J.

10.1101/828046 — cell biology — Posted on 2019-11-01

3365 The thrombopoietin receptor agonist eltrombopag inhibits human cytomegalovirus replication via iron chelation

Vogel, J.-U.; Schmidt, S.; Schmidt, D.; Rothweiler, F.; Koch, B.; Baer, P. C.; Rabenau, H. F.; Michel, D.; Stamminger, T.; Michaelis, M.; Cinatl, J.

10.1101/828152 — pharmacology and toxicology — Posted on 2019-11-01

3366 Hyperacetylated Chromatin Domains Mark Cell Type-Specific Genes and Suggest Distinct Modes of Enhancer Function

Fox, S.; Myers, J. A.; Davidson, C.; Getman, M.; Kingsley, P. D.; Frankiewicz, N.; Bulger, M.

10.1101/666784 — genetics — Posted on 2019-11-01

3367 Diet-induced changes to host gut microbiota are linked to foraging innovation in a wild bird.

Davidson, G.; Wiley, N.; Cooke, A. C.; Johnson, C. N.; Fouhy, F.; Reichert, M. S.; de la Hera, I.; Crane, J. M. S.; Kulahci, I. G.; Ross, R. P.; Stanton, C.; Quinn, J. L.

10.1101/827741 — ecology — Posted on 2019-11-01

3368 Chromatin organization in early land plants reveals an ancestral association between H3K27me3, transposons, and constitutive heterochromatin

Montgomery, S. A.; Tanizawa, Y.; Galik, B.; Wang, N.; Ito, T. A.; Mochizuki, T.; Akimcheva, S.; Bowman, J.; Cognat, V.; Drouard, L.; Ekker, H.; Houng, S.-F.; Kohchi, T.; Lin, S.-S.; Liu, L.-Y. D.; Nakamura, Y.; Valeeva, L. R.; Shakirov, E. V.; Shippen, D. E.; Wei, W.-L.; Yagura, M.; Yamaoka, S.; Yamato, K. T.; Liu, C.; Berger, F.

10.1101/827881 — molecular biology — Posted on 2019-11-01

3369 Simultaneous quantification of Vibrio metoecus and Vibrio cholerae with its O1 serogroup and toxigenic subpopulations in environmental reservoirs

Nasreen, T.; Hussain, N. A. S.; Islam, M. T.; Orata, F. D.; Kirchberger, P. C.; Alam, M.; Yanow, S. K.; Boucher, Y. F.

10.1101/822551 — microbiology — Posted on 2019-11-01

3370 Genomic characterization and curation of UCEs improves species tree reconstruction.

Van Dam, M. H.; Henderson, J. B.; Esposito, L.; Trautwein, M.

10.1101/828335 — evolutionary biology — Posted on 2019-11-01

3371 A Graph-Directed Approach for Creation of a Homology Modeling Library: Application to Venom Structure Prediction

Mansbach, R. A.; Chakraborty, S.; Travers, T.; Gnanakaran, S.

10.1101/828129 — bioinformatics — Posted on 2019-11-01

3372 Kinetic Analysis of Lipid Metabolism in Live Breast Cancer Cells via Nonlinear Optical Microscopy

Hou, J.; Reid, N. E.; Tromberg, B.; Potma, E. O.

10.1101/827931 — bioengineering — Posted on 2019-11-01

3373 Unraveling Why We Sleep: Quantitative Analysis Reveals Abrupt Transition from Neural Reorganization to Repair in Early Development

Cao, J.; Herman, A. B.; West, G. B.; Poe, G.; Savage, V. M.

10.1101/827212 — neuroscience — Posted on 2019-11-01

3374 A Bayesian method for rare variant analysis using functional annotations and its application to Autism

Han, S.; Knoblauch, N.; Wang, G.; Zhao, S.; Liu, Y.; Xie, Y.; Sheng, W.; Nguyen, H. T.; He, X.

10.1101/828061 — genetics — Posted on 2019-11-01

3375 One-step generation of zebrafish carrying a conditional knockout-knockin visible switch via CRISPR/Cas9-mediated intron targeting

Li, J.; Li, H.; Gu, S.; Zi, H.; Jiang, L.; Du, J.

10.1101/827352 — genetics — Posted on 2019-11-01

3376 Spermiogenesis in the acoel Symsagittifera roscoffensis: nucleus-plasma membrane contact sites and microtubules.

Hayes, M. J.; Zakrzewski, A. C.; Levine, T. P.; Telford, M. J.

10.1101/828251 — cell biology — Posted on 2019-11-01

3377 Sexual imprinting overrides order effects

Lima, S. Q.; Moreira, L.; Zinck, L.; Nomoto, K.

10.1101/828236 — animal behavior and cognition — Posted on 2019-11-01

3378 A Plausible Accelerating Function of Intermediate States in Cancer Metastasis

Goetz, H.; Melendez-Alvarez, J. R.; Chen, L.; Tian, X.

10.1101/828343 — systems biology — Posted on 2019-11-01

3379 Ultrafast Readout of Representations from Spatially Distributed Rodent Hippocampal Field Potentials

Cao, L.; Varga, V.; Chen, Z. S.

10.1101/828467 — neuroscience — Posted on 2019-11-01

3380 Gradual replacement of wild bees by honeybees in flowers of the Mediterranean Basin over the last 50 years

Herrera, C. M.

10.1101/828160 — ecology — Posted on 2019-11-01

3381 Divergent population recovery trajectories following sex-biased perturbation in life history traits

Goto, D.; Hamel, M. J.; Hammen, J. J.; Rugg, M. L.; Pegg, M. A.; Forbes, V. E.

10.1101/828244 — ecology — Posted on 2019-11-01

3382 Mitochondria tether to Focal Adhesions during cell migration and regulate their size.

Daniel, R.; Mengeta, A.; Bilodeau, P.; Lee, J. M.

10.1101/827998 — cell biology — Posted on 2019-11-01

3383 Bioengineering a novel 3D in-vitro model to recreate physiological oxygen levels and tumor-immune interactions

Bhattacharya, S.; Calar, K.; Evans, C.; Petrasko, M.; de la Puente, P.

10.1101/828145 — cancer biology — Posted on 2019-11-01

3384 Experimental control of macrophage pro-inflammatory dynamics using predictive models

Weinstock, L. D.; Forsmo, J. E.; Wilkinson, A.; Ueda, J.; Wood, L. B.

10.1101/826966 — bioengineering — Posted on 2019-11-01

3385 Histologic safety of transcranial focused ultrasound neuromodulation and magnetic resonance acoustic radiation force imaging in rhesus macaques and sheep

Gaur, P.; Casey, K. M.; Kubanek, J.; Li, N.; Mohammadjavadi, M.; Saenz, Y.; Glover, G. H.; Bouley, D. M.; Butts Pauly, K.

10.1101/827063 — bioengineering — Posted on 2019-11-01

3386 Kinetic foundation of the zero-inflated negative binomial model for single-cell RNA sequencing data

Jia, C.

10.1101/827840 — systems biology — Posted on 2019-11-01

3387 Assessment of anesthesia on physiological stability and bold signal reliability during visual or acoustic stimulation in the cat

Levine, A. T.; Li, B.; Barnes, P.; Lomber, S. G.; Butler, B. E.

10.1101/827949 — neuroscience — Posted on 2019-11-01

3388 Differential modes of orphan subunit recognition for the WRB/CAML complex

Inglis, A. J.; Page, K. R.; Guna, A.; Voorhees, R. M.

10.1101/828228 — molecular biology — Posted on 2019-11-01

3389 First evidence of production of the lantibiotic nisin P

Garcia-Gutierrez, E.; O'Connor, P. M.; Saalbach, G.; Walsh, C. J.; Hegarty, J. W.; Guinane, C. M.; Mayer, M. J.; Narbad, A.; Cotter, P. D.

10.1101/827204 — microbiology — Posted on 2019-11-01

3390 Profiling the effects of rifaximin on the healthy human colonic microbiota using a chemostat model

Moura, I. B.; Buckley, A. M.; Ewin, D.; Clark, E.; Mitra, S.; Wilcox, M. H.; Chilton, C. H.

10.1101/828269 — microbiology — Posted on 2019-11-01

3391 Allele-specific open chromatin in human iPSC neurons elucidates functional non-coding disease variants

Zhang, S.; Zhang, H.; Qiao, M.; Zhou, Y.; Zhao, S.; Kozlova, A.; Shi, J.; Sanders, A. R.; Wang, G.; Sengupta, S.; West, S.; Streit, M.; Cowan, C. A.; Chen, M.; Pang, Z.; Gejman, P. V.; He, X.; Duan, J.

10.1101/827048 — genetics — Posted on 2019-11-01

3392 Simulating the human tumor microenvironment in colorectal cancer organoids in vitro and in vivo

Devarasetty, M.; Dominijanni, A.; Herberg, S.; Shelkey, E.; Skardal, A.; Soker, S.

10.1101/822684 — cancer biology — Posted on 2019-11-01

3393 Evaluation of haplotype callers for next-generation sequencing of viruses

Eliseev, A.; Gibson, K. M.; Avdeyev, P. M.; Novik, D.; Bendall, M. L.; Perez-Losada, M.; Alexeev, N.; Crandall, K. A.

10.1101/828350 — bioinformatics — Posted on 2019-11-01

3394 A statistical framework for measuring reproducibility and replicability of high-throughput experiments from multiple sources

Ranalli, M.; Lyu, Y.; Li, Q.

10.1101/827527 — bioinformatics — Posted on 2019-11-01

3395 Experimental control of macrophage pro-inflammatory dynamics using predictive models

Weinstock, L. D.; Forsmo, J. E.; Wilkinson, A.; Ueda, J.; Wood, L. B.

10.1101/826966 — bioengineering — Posted on 2019-11-01

3396 Development of an in vitro Experimental Model for Investigating the Effect of Matrix Stiffness on Epithelial Barrier Permeability

Roy, N.; Turner-Brannen, E.; West, A. R.

10.1101/828079 — bioengineering — Posted on 2019-11-01

3397 Identification of a fatty acid-sensitive interaction between mitochondrial uncoupling protein 3 and enoyl-CoA hydratase 1 in skeletal muscle

Dao, C.; Kenaston, A.; Riley, C. L.; Hirasaka, K.; Kohno, S.; Solmonson, A.; Nowinski, S. M.; Fang, G.; Fathe, K.; Pfeiffer, M.; Yang, X.; Nikawa, T.; Mills, E.

10.1101/821637 — biochemistry — Posted on 2019-11-01

3398 A model to study orienting responses in zebrafish, and applications towards the emotion-cognition interaction

do Nascimento, B. G.; Oliveira e Oliveira, H. S. T.; Silva, H. T. L.; de Siqueira-Silva, D. H.; Lima-Maximino, M. G.; Maximino, C.

10.1101/827733 — animal behavior and cognition — Posted on 2019-11-01

3399 FtsK in motion reveals its mechanism for double-stranded DNA translocation

Jean, N. L.; Rutherford, T. J.; Löwe, J.

10.1101/828319 — molecular biology — Posted on 2019-11-01

3400 Allele-specific DNA methylation is increased in cancers and its dense mapping in normal plus neoplastic cells increases the yield of disease-associated regulatory SNPs

Do, C.; Dumont, E.; Salas, M.; Castano, A.; Mujahed, H.; Maldonado, L.; Singh, A.; Bhagat, G.; Lehman, S.; Christiano, A. M.; Madhavan, S.; Nagy, P. L.; Green, P. H. R.; Feinman, R.; Trimble, C.; Marder, K.; Honig, L.; Monk, C.; Goy, A.; Chow, K.; Goldlust, S.; Kaptain, G.; Siegel, D.; Tycko, B.

10.1101/815605 — genomics — Posted on 2019-11-01

3401 Joint seasonality in geographic and ecological spaces, illustrated with a partially migratory bird

Basille, M.; Watling, J.; Romanach, S.; Borkhataria, R.

10.1101/514349 — ecology — Posted on 2019-11-01

3402 A MAP of tumor-host interactions in glioma at single cell resolution

Caruso, F.; Garofano, L.; D'Angelo, F.; Yu, K.; Tang, F.; Yuan, J.; Zhang, J.; Cerulo, L.; Bedognetti, D.; Sims, P.; Suva, M.; Su, X.-D.; Lasorella, A.; Iavarone, A.; Ceccarelli, M.

10.1101/827758 — bioinformatics — Posted on 2019-11-01

3403 Biofilm rupture by laser-induced stress waves increases with loading amplitude, independent of location

Kearns, K. L.; Boyd, J. D.; Grady, M. E.

10.1101/827964 — bioengineering — Posted on 2019-11-01

3404 Spatially Resolved Estimation of Metabolic Oxygen Consumption From Optical Measurements in Cortex

Saetra, M. J.; Solbraa, A. V.; Devor, A.; Dale, A. M.; Einevoll, G. T.

10.1101/827865 — neuroscience — Posted on 2019-11-01

3405 Maternal Odor Reduces the Neural Threat Response in Human Infants

Jessen, S.

10.1101/827626 — neuroscience — Posted on 2019-11-01

3406 Cognitive and default mode networks support developmental stability in functional connectome fingerprinting through adolescence

Jalbrzikowski, M.; Lei, F.; Foran, W.; Calabro, F.; Roeder, K.; Devlin, B.; Luna, B.

10.1101/812719 — neuroscience — Posted on 2019-11-01

3407 Crowdsourcing neuroscience: inter-brain coupling during face-to-face interactions outside the laboratory

Dikker, S.; Michalareas, G.; Oostrik, M.; Serafimaki, A.; Kahraman, H. M.; Struiksma, M. E.; Poeppel, D.

10.1101/822320 — neuroscience — Posted on 2019-11-01

3408 DNB-Based On-Chip Motif Finding (DocMF): a High-Throughput Method to Profile Different Types of Protein-DNA Interactions

10.1101/827428 — molecular biology — Posted on 2019-11-01

3409 The Pleiades cluster of fungal effector genes inhibit 1 host defenses

Navarrete, F.; Grujic, N.; Stirnberg, A.; Aleksza, D.; Gallei, M.; Adi, H.; Bindics, J.; Trujillo, M.; Djamei, A.

10.1101/827600 — microbiology — Posted on 2019-11-01

3410 Heat stress induces ferroptosis in a photosynthetic prokaryote.

Aguilera, A.; Berdun, F.; Bartoli, C.; Steelheart, C.; Alegre, M.; Salerno, G.; Pagnussat, G.; Martin, M. V.

10.1101/828293 — microbiology — Posted on 2019-11-01

3411 Aggressive periodontitis with neutropenia caused by MMD2 mutation

Mizuno, N.; Morino, H.; Mihara, K.; Iwata, T.; Ohno, Y.; Matsuda, S.; Ouhara, K.; Kajiya, M.; Suzuki-Takedachi, K.; Sotomaru, Y.; Takeda, K.; Sasaki, S.; Okanobu, A.; Sakuma, T.; Yamamoto, T.; Matsuda, Y.; Ohsawa, R.; Fujita, T.; Shiba, H.; Kawakami, H.; Kurihara, H.

10.1101/827675 — genomics — Posted on 2019-11-01

3412 Heritable genetic variants in key cancer genes link cancer risk with anthropometric traits

Di Giovannantonio, M.; Harris, B. H. L.; Zhang, P.; Kitchen-Smith, I.; Xiong, L.; Sahgal, N.; Stracquadanio, G.; Wallace, M.; Blagden, S.; Lord, S.; Harris, D. A.; Harris, A. L.; Bond, G.; Buffa, F. M.

10.1101/827634 — genetics — Posted on 2019-11-01

3413 Climate change and deforestation boost post-fire grass invasion of Amazonian forests

De Faria, B. L.; Staal, A.; Martin, P.; Panday, P.; Castanho, A.; Dantas, V.

10.1101/827196 — ecology — Posted on 2019-11-01

3414 Soil Water Carrying Capacity for Vegetation

Guo, Z.

10.1101/827576 — ecology — Posted on 2019-11-01

3415 Biological sex and age shape melanoma tumour evolution

Lotz, M.; Furney, S. J.; Viros, A.

10.1101/828038 — cancer biology — Posted on 2019-11-01

3416 GPSRdocker: A Docker-based Resource for Genomics, Proteomics and Systems biology

Agrawal, P.; Kumar, R.; Usmani, S. S.; Dhall, A.; Patiyal, S.; Sharma, N.; Kaur, H.; Kumar, V.; Kaur, D.; Jain, S.; Pande, A.; Bhalla, S.; Raghava, G. P. S.

10.1101/827766 — bioinformatics — Posted on 2019-11-01

3417 MapGL: Inferring evolutionary gain and loss of short genomic sequence features by phylogenetic maximum parsimony.

Diehl, A.; Boyle, A. P.

10.1101/827907 — genomics — Posted on 2019-11-01

3418 Timing the origin of eukaryotic cellular complexity with ancient duplications

Vosseberg, J.; van Hooff, J. J. E.; Marcet-Houben, M.; van Vlimmeren, A.; van Wijk, L. M.; Gabaldon, T.; Snel, B.

10.1101/823484 — evolutionary biology — Posted on 2019-11-01

3419 Protein function achieved through multiple covalent states

Butera, D.; Hogg, P. J.

10.1101/828368 — biochemistry — Posted on 2019-11-01

3420 Capturing the Continuous Complexity of Behavior in C. elegans

Ahamed, T.; Costa, A. C.; Stephens, G. J.

10.1101/827535 — animal behavior and cognition — Posted on 2019-11-01

3421 Stochasticity in bacterial division control: Preliminary consequences for protein concentration

Nieto Acuna, C. A.; Vargas Garcia, C. A.; Pedraza, J. M.

10.1101/826867 — systems biology — Posted on 2019-11-01

3422 Optimizing DNA extraction methods for Nanopore sequencing of Neisseria gonorrhoeae direct from urine samples

Street, T. L.; Barker, L.; Sanderson, N. D.; Kavanagh, J.; Hoosdally, S.; Cole, K.; Newnham, R.; Selvaratnam, M.; Andersson, M.; Llewelyn, M.; O'Grady, J.; Crook, D. W.; Eyre, D. W.

10.1101/827485 — microbiology — Posted on 2019-11-01

3423 The clinical drug candidate ebselen attenuates inflammation and promotes microbiome recovery after antibiotic treatment for Clostridium difficile infection

Garland, M.; Hryckowian, A. J.; Tholen, M.; Loscher, S.; Van Treuren, W. W.; Oresic Bender, K.; Sonnenburg, J. L.; Bogyo, M.

10.1101/827329 — microbiology — Posted on 2019-11-01

3424 CyTOF reveals phenotypically-distinct human blood neutrophil populations differentially correlated with melanoma stage

Zhu, Y. P.; Dinh, H. Q.; Eggert, T.; Meyer, M.; Araujo, D. J.; Vijayanand, P.; Ottensmeier, C.; HEDRICK, C.

10.1101/826644 — immunology — Posted on 2019-11-01

3425 Biomolecular AFM viewer

Amyot, R.; Flechsig, H.

10.1101/827402 — biophysics — Posted on 2019-11-01

3426 A model of a panoramic visual representation in the dorsal visual pathway: the case of spatial reorientation and memory-based search

Li, T.; Arleo, A.; Sheynikhovich, D.

10.1101/827667 — animal behavior and cognition — Posted on 2019-11-01

3427 Identification of a novel tedizolid resistance mutation in rpoB of methicillin-resistant Staphylococcus aureus

Shen, T.; Penewit, K.; Waalkes, A.; Xu, L.; Salipante, S.; Nath, A.; Werth, B. J.

10.1101/827501 — microbiology — Posted on 2019-11-01

3428 Neutralizing antibody responses to an HIV envelope glycan hole are not easily broadened

Yang, Y. R.; McCoy, L. E.; van Gils, M. J.; Andrabi, R.; Turner, H. L.; Yuan, M.; Cottrell, C.; Ozorowski, G.; Voss, J. E.; Pauthner, M.; Polveroni, T. M.; Messmer, T.; Wilson, I. A.; Sanders, R. W.; Burton, D. R.; Ward, A. B.

10.1101/827477 — immunology — Posted on 2019-11-01

3429 Measuring three-dimensional dynamics of platelet activation using 3-D quantitative phase imaging

Lee, S.; Jang, S.; Park, Y.

10.1101/827436 — bioengineering — Posted on 2019-11-01

3430 MCMBP maintains genome integrity by protecting the MCM subunits from degradation

Santosa, V.; Kanemaki, M.

10.1101/827386 — molecular biology — Posted on 2019-11-01

3431 Novel insights into the taxonomic diversity and molecular mechanisms of bacterial Mn(III) reduction

Szeinbaum, N.; Nunn, B. L.; Cavazos, A. R.; Crowe, S. A.; Stewart, F. J.; DiChristina, T. J.; Reinhard, C. T.; Glass, J. B.

10.1101/695007 — microbiology — Posted on 2019-11-01

3432 Density dependence and a colonization rule predict spatial patterning

Brush, M. J.; Harte, J.

10.1101/827238 — ecology — Posted on 2019-11-01

3433 A Small-Molecule Activity-Based Probe for Monitoring Ubiquitin C-terminal Hydrolase L1 (UCHL1) Activity in Live Cells and Zebrafish Embryos

Geurink, P. P.; Kooij, R.; Sapmaz, A.; Liu, S.; Xin, B.-T.; Janssen, G. M. C.; van Veelen, P. A.; ten Dijke, P.; Ovaa, H.

10.1101/827642 — biochemistry — Posted on 2019-11-01

3434 Leveraging correlations between polygenic risk score predictors to detect heterogeneity in GWAS cohorts

Yuan, J.; Xing, H.; Lamy, A. L.; The Schizophrenia Working Group of the Psychiatric Genomics Consortium, ; Lencz, T.; Pe'er, I.

10.1101/827162 — bioinformatics — Posted on 2019-11-01

3435 Calling differential DNA methylation at cell-type resolution: an objective status-quo

Teschendorff, A.; Jing, H.; Zheng, S.

10.1101/822940 — bioinformatics — Posted on 2019-11-01

3436 The Derived-Band Envelope Following Response and its Sensitivity to Sensorineural Hearing Deficits

Keshishzadeh, S.; Garrett, M.; Verhulst, S.

10.1101/820704 — bioengineering — Posted on 2019-11-01

3437 ER stress drives ER-to-Golgi trafficking of ATF6 by blocking its membrane insertion

Xu, J.; Meng, X.; Wu, F.; Deng, H.; Fu, S.

10.1101/822965 — cell biology — Posted on 2019-11-01

3438 OCTAD: an open workplace for virtually screening therapeutics targeting precise cancer patient groups using gene expression features

Zeng, B.; Glicksberg, B. S.; Newbury, P.; Xing, J.; Liu, K.; Wen, A.; Chow, C.; Chen, B.

10.1101/821546 — bioinformatics — Posted on 2019-11-01

3439 The α1 subunit of the Na,K-ATPase acts upstream of PI(4,5)P2 facilitating unconventional secretion of Fibroblast Growth Factor 2 from tumor cells

Legrand, C.; Saleppico, R.; Sticht, J.; Lolicato, F.; Mueller, H.-M.; Wegehingel, S.; Dimou, E.; Steringer, J. P.; Ewers, H.; Vattulainen, I.; Freund, C.; Nickel, W.

10.1101/827691 — biochemistry — Posted on 2019-11-01

3440 Improved chemistry restraints for crystallographic refinement by integrating the Amber force field into Phenix

Moriarty, N. W.; Janowski, P. A.; Swails, J.; Nguyen, H.; Richardson, J. S.; Case, D. A.; Adams, P. D.

10.1101/724567 — molecular biology — Posted on 2019-11-01

3441 TXO: Transcription-Only genetic circuits as a novel cell-free approach for Synthetic Biology

Millacura, F. A.; Li, M.; Valenzuela-Ortega, M. A.; French, C.

10.1101/826230 — synthetic biology — Posted on 2019-11-01

3442 Disrupted remapping of place cells and grid cells in knock-in model of Alzheimer’s disease

Jun, H.; Soma, S.; Saito, T.; Saido, T. C.; Igarashi, K. M.

10.1101/815993 — pathology — Posted on 2019-11-01

3443 Amperometric measurements of cocaine cue and novel context-evoked glutamate and nitric oxide release in the nucleus accumbens core

Siemsen, B.; McFaddin, J.; Haigh, K.; Brock, A.; Leath, M. N.; Hooker, K.; McGonegal, L.; Scofield, M.

10.1101/826677 — neuroscience — Posted on 2019-11-01

3444 Copulas and their potential for ecology

Ghosh, S.; Sheppard, L. W.; Holder, M. T.; Loecke, T. E.; Reid, P. C.; Bever, J. D.; Reuman, D. C.

10.1101/650838 — ecology — Posted on 2019-11-01

3445 The RNA export factor Mex67 functions as a mobile nucleoporin

Derrer, C. P.; Mancini, R.; Vallotton, P.; Huet, S.; Weis, K.; Dultz, E.

10.1101/789818 — cell biology — Posted on 2019-11-01

3446 Inhibition of protein synthesis in M1 of monkeys disrupts performance of sequential movements guided by memory

Ohbayashi, M.

10.1101/818674 — neuroscience — Posted on 2019-11-01

3447 A cryo-tomography-based volumetric model of the actin core of mouse vestibular hair cell stereocilia lacking plastin 1

Song, J.; Patterson, R.; Krey, J. F.; Hao, S.; Wang, L.; Ng, B.; Sazzed, S.; Kovacs, J.; Wriggers, W.; He, J.; Barr-Gillespie, P. G.; Auer, M. G.

10.1101/825737 — neuroscience — Posted on 2019-11-01

3448 An EEG investigation of the trial-by-trial updating of complex knowledge structures

Richter, F. R.

10.1101/805887 — neuroscience — Posted on 2019-11-01

3449 Atypical processing of uncertainty in individuals at risk for psychosis

Cole, D. M.; Diaconescu, A. O.; Pfeiffer, U. J.; Brodersen, K. H.; Mathys, C. D.; Julkowski, D.; Ruhrmann, S.; Schilbach, L.; Tittgemeyer, M.; Vogeley, K.; Stephan, K. E.

10.1101/796300 — neuroscience — Posted on 2019-11-01

3450 Association between DNA methylation and ADHD symptoms from birth to school age: A prospective meta-analysis

Neumann, A.; Walton, E.; Alemany, S.; Cecil, C.; Gonzalez, J. R.; Jima, D. D.; Lahti, J.; Tuominen, S. T.; Barker, E. D.; Binder, E.; Caramaschi, D.; Carracedo, A.; Czamara, D.; Evandt, J.; Felix, J. F.; Fuemmeler, B. F.; Gutzkow, K. B.; Hoyo, C.; Julvez, J.; Kajantie, E.; Laivuori, H.; Maguire, R.; Maitre, L.; Murphy, S. K.; Murcia, M.; Villa, P. M.; Sharp, G.; Sunyer, J.; Raikkonen, K.; Bakermans-Kranenburg, M.; van IJzendoorn, M.; Guxens, M.; Relton, C. L.; Tiemeier, H.

10.1101/806844 — genetics — Posted on 2019-11-01

3451 Phasic and tonic serotonin modulate alarm reactions and post-exposure behavior in zebrafish

Lima-Maximino, M.; Pyterson, M. P.; do Carmo Silva, R. X.; Gomes, G. C. V.; Rocha, S. P.; Herculano, A. M.; Rosemberg, D. B.; Maximino, C.

10.1101/827824 — neuroscience — Posted on 2019-11-01

3452 In Vivo Neuroregeneration to Treat Ischemic Stroke in Adult Non-Human Primate Brains through NeuroD1 AAV-based Gene Therapy

Ge, L.; Yang, F.; Feng, J.; Chen, N.; Jiang, M.; Wang, J.; Hu, X.; Chen, G.

10.1101/816066 — neuroscience — Posted on 2019-11-01

3453 Automatic Spatial Estimation of White Matter Hyperintensities Evolution in Brain MRI using Disease Evolution Predictor Deep Neural Networks

Rachmadi, M. F.; Valdes Hernandez, M. d. C.; Makin, S.; Wardlaw, J. M.; Komura, T.

10.1101/738641 — neuroscience — Posted on 2019-11-01

3454 genBaRcode - a comprehensive R package for genetic barcode analysis

Thielecke, L.; Cornils, K.; Glauche, I.

10.1101/696229 — bioinformatics — Posted on 2019-11-01

3455 Entorhinal and ventromedial prefrontal cortices abstract and generalise the structure of reinforcement learning problems

Baram, A. B.; Muller, T. H.; Nili, H.; Garvert, M.; Behrens, T. E. J.

10.1101/827253 — neuroscience — Posted on 2019-11-01

3456 Changes-of-mind in the absence of new post-decision evidence

Atiya, N. A. A.; Zgonnikov, A.; Schoemann, M.; Scherbaum, S.; O'Hora, D.; Wong-Lin, K.

10.1101/656983 — neuroscience — Posted on 2019-11-01

3457 The basal ganglia can control learned motor sequences independently of motor cortex

Dhawale, A. K.; Wolff, S. B. E.; Ko, R.; Ölveczky, B. P.

10.1101/827261 — neuroscience — Posted on 2019-11-01

3458 Sleep promotes downward firing rate homeostasis

Torrado Pacheco, A.; Bottorff, J.; Turrigiano, G. G.

10.1101/827832 — neuroscience — Posted on 2019-11-01

3459 High and asymmetric somato-dendritic coupling of V1 layer 5 neurons independent of behavioural state and visual stimulation

Francioni, V.; Padamsey, Z.; Rochefort, N.

10.1101/664177 — neuroscience — Posted on 2019-11-01

3460 Systematics and geographical distribution of Galba species, a group of cryptic and worldwide freshwater snails

Alda, P.; Lounnas, M.; Vazquez, A. A.; Ayaqui, R.; Calvopina, M.; Celi-Erazo, M.; Dillon, R.; Gonzalez Ramirez, L. C.; Loker, E. S.; Muzzio-Aroca, J.; Narvaez, A. O.; Noya, O.; Pereira, A. E.; Robles, L. M.; Rodriguez-Hidalgo, R.; Uribe, N.; David, P.; Jarne, P.; Pointier, J.-P.; Hurtrez-Bousses, S.

10.1101/647867 — evolutionary biology — Posted on 2019-11-01

3461 Cross-species cortical alignment identifies different types of neuroanatomical reorganization in the temporal lobe of higher primates

Eichert, N.; Robinson, E. C.; Bryant, K. L.; Jbabdi, S.; Jenkinson, M.; Li, L.; Krug, K.; Watkins, K. E.; Mars, R. B.

10.1101/645234 — neuroscience — Posted on 2019-11-01

3462 Modulation of the primary auditory thalamus when recognising speech in noise

Mihai, P. G.; Tschentscher, N.; von Kriegstein, K.

10.1101/646570 — neuroscience — Posted on 2019-11-01

3463 The desmosomal cadherin Desmoglein-3 regulates YAP and phospho-YAP in keratinocyte responses to mechanical forces

Uttagomol, J.; Ahmad, U. S.; Rehman, A.; Huang, Y.; Laly, A. C.; Kang, A.; Soetaert, J.; Chance, R.; Teh, M.-T.; Connelly, J. T.; Wan, H.

10.1101/827725 — cell biology — Posted on 2019-11-01

3464 The antimalarial natural product salinipostin A identifies essential α/β serine hydrolases involved in lipid metabolism in P. falciparum parasites

Yoo, E.; Schulze, C. J.; Stokes, B. H.; Onguka, O.; Yeo, T.; Mok, S.; Gnadig, N. F.; Zhou, Y.; Kurita, K.; Foe, I. T.; Terrell, S. M.; Boucher, M. J.; Cieplak, P.; Linington, R. G.; Long, J. Z.; Uhlemann, A.-C.; Weerapana, E.; Fidock, D. A.; Bogyo, M.

10.1101/827287 — cell biology — Posted on 2019-11-01

3465 Highlighting curcumin-induced crosstalk between autophagy and apoptosis: A biochemical approach coupling impedancemetry, imaging, and flow cytometry

Sala-de-Oyanguren, F. J.; Rainey, N. E.; Moustapha, A.; Saric, A.; Sureau, F.; O'Connor, J.-E.; Petit, P.

10.1101/827279 — cell biology — Posted on 2019-11-01

3466 Microtubule-dependent protein trafficking promotes apical constriction during tissue invagination

Chung, S.; Le, T. P.

10.1101/827378 — developmental biology — Posted on 2019-11-01

3467 High-sensitivity assessment of phagocytosis by persistent association-based normalization

de Neergaard, T.; Sundwall, M.; Nordenfelt, P.

10.1101/827568 — cell biology — Posted on 2019-11-01

3468 PHYTOCHROME INTERACTING FACTORs trigger environmentally responsive chromatin dynamics

Willige, B. C.; Zander, M.; Phan, A.; Garza, R. M.; Trigg, S. A.; He, Y.; Nery, J. R.; Chen, H.; Ecker, J. R.; Chory, J.

10.1101/826842 — genomics — Posted on 2019-11-01

3469 Oscillatory Mechanisms of Successful Memory Formation in Younger and Older Adults Are Related to Structural Integrity

Sander, M. C.; Fandakova, Y.; Grandy, T. H.; Shing, Y. L.; Werkle-Bergner, M.

10.1101/530121 — neuroscience — Posted on 2019-11-01

3470 Weighted burden analysis of exome-sequenced late onset Alzheimer’s cases and controls provides further evidence for a role for PSEN1 and suggests involvement of the PI3K/Akt/GSK-3β and WNT signalling pathways

Curtis, D.; Bakaya, K.; Sharma, L.; Bandyopadhyay, S.

10.1101/596007 — genetics — Posted on 2019-11-01

3471 Local vulnerability and global connectivity jointly shape neurodegenerative disease propagation

Zheng, Y.-Q.; Zhang, Y.; Yau, Y. H. C.; Zeighami, Y.; Larcher, K.; Misic, B.; Dagher, A.

10.1101/449199 — neuroscience — Posted on 2019-11-01

3472 Enhancing senior high school student engagement and academic performance using an inclusive and scalable inquiry-based program

Davenport Huyer, L.; Callaghan, N. I.; Dicks, S.; Scherer, E.; Shukalyuk, A. I.; Jou, M.; Kilkenny, D. M.

10.1101/822783 — scientific communication and education — Posted on 2019-11-01

3473 Detection and treatment strategy for Tritrichomonas muris in the common laboratory mouse

Da Costa, A. S.; Graham, T. M.; Duncan, J. A.; Pillai, S. P. S.; Lund, J. M.

10.1101/827055 — microbiology — Posted on 2019-11-01

3474 Abundance, density, and social structure of African forest elephants (Loxodonta cyclotis) in a human-modified landscape in southwestern Gabon

Brand, C. M.; Johnson, M. B.; Parker, L. D.; Maldonado, J. E.; Korte, L.; Vanthomme, H.; Alonso, A.; Ruiz-Lopez, M. J.; Wells, C. P.; Ting, N.

10.1101/827188 — genetics — Posted on 2019-11-01

3475 Correction of missing-wedge artifacts in filamentous tomograms by template-based constrained deconvolution

Kovacs, J.; Song, J. H.; Auer, M.; He, J.; Wriggers, W. R.

10.1101/827006 — biophysics — Posted on 2019-11-01

3476 High Yield Monolayer Graphene Grids for Near-Atomic Resolution Cryo-Electron Microscopy

Han, Y.; Fan, X.; Wang, H.; Zhao, F.; Tully, C. G.; Kong, J.; Yao, N.; Yan, N.

10.1101/827089 — biophysics — Posted on 2019-11-01

3477 Evaluation of Cell Type Deconvolution R Packages on Single Cell RNA-seq Data

Huang, Q.; Liu, Y.; Du, Y.; Garmire, L.

10.1101/827139 — bioinformatics — Posted on 2019-11-01

3478 A pilot exploratory study of the potentials of deep learning methods in cancer image segmentation and classification

Yi, E.; Liu, Y.

10.1101/820563 — bioinformatics — Posted on 2019-11-01

3479 Including Crystallographic Symmetry in Quantum-based Refinement: Q|R#2

Min, Z.; Biczysko, M.; Xu, Y.; Moriarty, N. W.; Kruse, H.; Urzhumtsev, A.; Waller, M. P.; Afonine, P. V.

10.1101/827170 — bioinformatics — Posted on 2019-11-01

3480 Molecules To Mankind: Bridging Laboratory And Population Training

Burke, R. M.; Gazmararian, J. A.; McCarty, N. A.; Rambo-Martin, B. L.; Shaw, K. A.

10.1101/821587 — scientific communication and education — Posted on 2019-11-01

3481 Cerebellar patients have intact feedback control that can be leveraged to improve reaching

Zimmet, A. M.; Bastian, A. J.; Cowan, N.

10.1101/827113 — neuroscience — Posted on 2019-11-01

3482 A probabilistic framework for decoding behavior from in vivo calcium imaging data

Etter, G.; Manseau, F.; Williams, S.

10.1101/827030 — neuroscience — Posted on 2019-11-01

3483 A genome-wide almanac of co-essential modules assigns function to uncharacterized genes

10.1101/827071 — genomics — Posted on 2019-11-01

3484 Individualized multi-omic pathway deviation scores using multiple factor analysis

Rau, A.; Manansala, R.; Flister, M.; Rui, H.; Jaffrezic, F.; Laloë, D.; Auer, P.

10.1101/827022 — bioinformatics — Posted on 2019-11-01

3485 SVants: A long-read based method for structural variation detection in bacterial genomes

Hanson, B. M.; Johnson, J. S.; Leopold, S. R.; Sodergren, E.; Weinstock, G. M.

10.1101/822312 — bioinformatics — Posted on 2019-11-01

3486 Migration of intestinal dendritic cell subsets upon intrinsic and extrinsic TLR3 stimulation

Garcias Lopez, A.; Bekiaris, V.; Müller Luda, K.; Hütter, J.; Getachew Muleta, K.; Nakawesi, J.; Ulmert, I.; Kotarsky, K.; Malissen, B.; O'Keeffe, M.; Holzmann, B.; Agace, W. W.; Lahl, K.

10.1101/785675 — immunology — Posted on 2019-11-01

3487 Predicting Empathy from Resting Brain Connectivity: A Multivariate Approach

Christov-Moore, L.; Reggente, N.; Douglas, P. K.; Feusner, J.; Iacoboni, M.

10.1101/539551 — neuroscience — Posted on 2019-11-01

3488 Feedback control of morphogen gradient scale

Zhu, Y.; Qiu, Y.; Chen, W.; Nie, Q.; Lander, A. D.

10.1101/824292 — developmental biology — Posted on 2019-11-01

3489 Reverse engineering neural networks to characterise their cost functions

Isomura, T.; Friston, K. J.

10.1101/654467 — neuroscience — Posted on 2019-11-01

Archive, 2019-11