bioRxiv directory

Luke M Noble;Linda M Holland;Alisha J McLachlan;Alex Andrianopoulos;

10.1101/050054 — Developmental Biology — Posted on 2016-04-30

3 Genomics of primary chemoresistance and remission induction failure in pediatric and adult acute myeloid leukemia

Fiona C Brown;Paolo Cifani;Esther Drill;Jie He;Eric Still;Shan Zhong;Sohail Balasubramanian;Dean Pavlick;Bahar Yilmazel;Kristina M Knapp;Todd A Alonzo;Soheil Meshinchi;Richard M Stone;Steven M Kornblau;Guido Marcucci;Alan S Gamis;John C Byrd;Mithat Gonen;Ross L Levine;Alex Kentsis;

10.1101/051177 — Cancer Biology — Posted on 2016-04-30

4 Pyricularia graminis-tritici sp. nov., a new Pyricularia species causing wheat blast

V.L. Castroagudin;S.I. Moreira;D.A.S. Pereira;S.S. Moreira;P.C. Brunner;J.L.N. Maciel;P.W. Crous;Bruce McDonald;E. Alves;P.C. Ceresini;

10.1101/051151 — Evolutionary Biology — Posted on 2016-04-30

5 On the validity and errors of the pseudo-first-order kinetics in ligand-receptor binding

Wylie Stroberg;Santiago Schnell;

10.1101/051136 — Biochemistry — Posted on 2016-04-30

6 Genomic positional conservation identifies topological anchor point (tap)RNAs linked to developmental loci

Paulo P Amaral;Tommaso Leonardi;Namshik Han;Emmanuelle Vire;Dennis K Gascoigne;Raul Arias-Carrasco;Magdalena Buscher;Anda Zhang;Stefano Pluchino;Vinicius Maracaja-Coutinho;Helder I Nakaya;Martin Hemberg;Ramin Shiekhattar;Anton J Enright;Tony Kouzarides;

10.1101/051052 — Molecular Biology — Posted on 2016-04-29

7 Homeostatic responses regulate selfish mitochondrial genome dynamics in C. elegans

Bryan L Gitschlag;Cait S Kirby;David C Samuels;Rama D Gangula;Simon A Mallal;Maulik R Patel;

10.1101/050930 — Genetics — Posted on 2016-04-29

8 Reduced spatial integration in the ventral visual cortex underlies face recognition deficits in developmental prosopagnosia

Nathaniel Witthoft;Sonia Poltoratski;Mai Nguyen;Golijeh Golarai;Alina Liberman;Karen F LaRocque;Mary E Smith;Kalanit Grill-Spector;

10.1101/051102 — Neuroscience — Posted on 2016-04-29

9 Characterization of a putative NsrR homologue in Streptomyces venezuelae reveals a new member of the Rrf2 superfamily

John Tyson Munnoch;Ma Teresa Pellicer Martinez;Dimitri Svistunenko;Jason C Crack;Nick E Le Brun;Matthew I Hutchings;

10.1101/050989 — Molecular Biology — Posted on 2016-04-29

10 Uncovering the genomic basis of local adaptation by coherent synthesis of associations with phenotypes and home environments

Jesse Lasky;Matthew Reimherr;

10.1101/051110 — Genomics — Posted on 2016-04-29

11 Zika Fetal Neuropathogenesis: Etiology of a Viral Syndrome

Robert W Malone;Zachary Klase;Svetlana Khakhina;Michael V Callahan;Jill Glasspool-Malone;Adriano De Bernardi Schneider;

10.1101/050674 — Developmental Biology — Posted on 2016-04-30

12 Zika Fetal Neuropathogenesis: Etiology of a Viral Syndrome

Robert W Malone;Zachary Klase;Svetlana Khakhina;Michael V Callahan;Jill Glasspool-Malone;Adriano De Bernardi Schneider;

10.1101/050674 — Developmental Biology — Posted on 2016-04-29

13 Serotonin-dependent kinetics of bursts of feeding underlie a graded response to food availability

Kyung Suk Lee;Shachar Iwanir;Ronen Kopito;Monika Scholz;David Biron;Erel Levine;

10.1101/051086 — Animal Behavior and Cognition — Posted on 2016-04-29

14 How strongly does appetite counter weight loss? Quantification of the homeostatic control of human energy intake

David Polidori;Arjun Sanghvi;Randy Seeley;Kevin D Hall;

10.1101/051045 — Physiology — Posted on 2016-04-29

15 Artefactual origin of biphasic cortical spike-LFP correlation

Michael Okun;

10.1101/051029 — Neuroscience — Posted on 2016-04-29

16 Origin of modern syphilis and emergence of a contemporary pandemic cluster

Natasha Arora;Verena J. J Schuenemann;Günter Jäger;Alexander Peltzer;Alexander Seitz;Alexander Herbig;Michal Strouhal;Linda Grillová;Leonor Sánchez-Busó;Denise Kühnert;Kirsten I. I Bos;Leyla Rivero Rivero Davis;Lenka Mikalová;Sylvia Bruisten;Peter Komericki;Patrick French;Paul R. R Grant;María A Pando;Lucía Gallo Vaulet;Marcelo Rodríguez-Fermepin;Antonio Martinez;Arturo Centurión-Lara;Lorenzo Giacani;Steven J. J Norris;David Šmajs;Philipp P. P Bosshard;Fernando González-Candelas;Kay Nieselt;Johannes Krause;Homayoun C. C Bagheri;

10.1101/051037 — Microbiology — Posted on 2016-04-29

17 Soil Protists in Three Neotropical Rainforests are Hyperdiverse and Dominated by Parasites

Frederic Mahe;Colomban de Vargas;David Bass;Lucas Czech;Alexandros Stamatakis;Enrique Lara;Jordan Mayor;John Bunge;Sarah Sernaker;Tobias Siemensmeyer;Isabelle Trautmann;Sarah Romac;Cedric Berney;Alexey Kozlov;Edward Mitchell;Christophe Seppey;David Singer;Elianne Egge;Rainer Wirth;Gabriel Trueba;Micah Dunthorn;

10.1101/050997 — Microbiology — Posted on 2016-04-29

18 Demographic and immune-based selection shifts before and after European contact inferred from 50 ancient and modern exomes from the Northwest Coast of North America

John Lindo;Emilia Huerta-Sanchez;Shigeki Nakagome;Morten Rasmussen;Barbara Petzelt;Joycellyn Mitchell;Jerome S Cybulski;Eske Willerslev;Michael DeGiorgio;Ripan S Malhi;

10.1101/051078 — Genetics — Posted on 2016-04-29

19 Neighborhood regulation by lncRNA promoters, transcription, and splicing

Jesse M Engreitz;Jenna E Haines;Glen Munson;Jenny Chen;Elizabeth M Perez;Michael Kane;Patrick E McDonel;Mitchell Guttman;Eric S Lander;

10.1101/050948 — Molecular Biology — Posted on 2016-04-29

20 Complex molecular mixtures under cycling gradients as basis for lifes origins

Bert Poolman;Jan Spitzer;

10.1101/050740 — Microbiology — Posted on 2016-04-29

21 LINES between species: Evolutionary dynamics of LINE-1 retrotransposons across the eukaryotic tree of life

Atma M Ivancevic;R Daniel Kortschak;Terry Bertozzi;David L Adelson;

10.1101/050880 — Genomics — Posted on 2016-04-29

22 Efficiency of genome-wide association study in open-pollinated populations

José Marcelo Soriano Viana;Gabriel Borges Mundim;Fabyano Fonseca Silva;Antonio Augusto F Garcia;

10.1101/050955 — Genetics — Posted on 2016-04-29

23 Evolutionary mysteries in meiosis.

Thomas Lenormand;Jan Engelstädter;Susan E Johnston;Erik Wijnker;Christoph R Haag;

10.1101/050831 — Evolutionary Biology — Posted on 2016-04-29

24 Effects of elevated CO2 on predator avoidance behaviour by reef fishes is not altered by experimental test water

Philip Munday;Megan Welch;Bridie Allan;Sue-Ann Watson;Shannon McMahon;Mark I McCormick;

10.1101/050062 — Ecology — Posted on 2016-04-29

25 Graph analysis of structural brain networks in Alzheimer’s disease

Majnu John;Toshikazu Ikuta;Janina D Ferbinteanu;

10.1101/050708 — Bioinformatics — Posted on 2016-04-29

26 Global Genome Nucleotide Excision Repair is Organised into Domains Promoting Efficient DNA Repair in Chromatin

Shirong Yu;Katie Ellen Evans;Patrick van Eijk;Mark Bennett;Richard M Webster;Matthew Leadbitter;Yumin Teng;Raymond Waters;Stephen Philip P Jackson;Simon Huw Reed;

10.1101/050807 — Genomics — Posted on 2016-04-28

27 How life history can sway the fixation probability of mutants

Xiang-Yi Li;Shun Kurokawa;Stefano Giaimo;Arne Traulsen;

10.1101/050914 — Evolutionary Biology — Posted on 2016-04-28

28 Urbanization drives parallel adaptive clines in plant populations

Ken A. Thompson;Marie Renaudin;Marc T.J. Johnson;

10.1101/050773 — Evolutionary Biology — Posted on 2016-04-28

29 Ecology, molecules and colour: Multivariate species delimitation and conservation of Harlequin poison frogs

Andres Posso-Terranova;Jose Andres Abad;

10.1101/050922 — Evolutionary Biology — Posted on 2016-04-28

30 Increased taxon sampling reveals thousands of hidden orthologs in flatworms

Jose M Martin-Duran;Joseph F Ryan;Bruno Cossermelli Vellutini;Kevin Pang;Andreas Hejnol;

10.1101/050724 — Bioinformatics — Posted on 2016-04-28

31 Inferring interaction partners from protein sequences

Anne-Florence Bitbol;Robert S Dwyer;Lucy J Colwell;Ned S Wingreen;

10.1101/050732 — Systems Biology — Posted on 2016-04-28

32 A qualitative model of the rod photoreceptor in natural context

Timothee T Dubuc;Etienne B Roesch;

10.1101/050823 — Bioinformatics — Posted on 2016-04-28

33 Naïve chicks prefer hollow objects

Elisabetta Versace;Jana Schill;Andrea Maria Nencini;Giorgio Vallortigara;

10.1101/050799 — Animal Behavior and Cognition — Posted on 2016-04-28

34 Subcortical source and modulation of the narrowband gamma oscillation in mouse visual cortex

Aman B Saleem;Anthony D Lien;Michael Krumin;Bilal Haider;Miroslav Roman Roson;Asli Ayaz;Kimberley Reinhold;Laura Busse;Matteo Carandini;Kenneth D Harris;

10.1101/050245 — Neuroscience — Posted on 2016-04-28

35 Shh and ZRS enhancer co-localisation is specific to the zone of polarizing activity

William Iain Williamson;Laura A Lettice;Robert Hill;Wendy A Bickmore;

10.1101/050849 — Molecular Biology — Posted on 2016-04-28

36 Localizing metabolic synthesis in microbial cultures with kinetic mass spectrometry imaging (kMSI)

Katherine Louie;Benjamin Bowen;Rebecca Lau;Trent Northen;

10.1101/050658 — Microbiology — Posted on 2016-04-28

37 Genome-wide analyses of empathy and systemizing: heritability and correlates with sex, education, and psychiatric risk

Varun Warrier;Roberto Toro;Bhismadev Chakrabarti;Nadia Litterman;David Hinds;Thomas Bourgeron;Simon Baron-Cohen;

10.1101/050682 — Genomics — Posted on 2016-04-29

38 Genome-wide analyses of empathy and systemizing: heritability and correlates with sex, education, and psychiatric risk

Varun Warrier;Roberto Toro;Bhismadev Chakrabarti;Nadia Litterman;David Hinds;Thomas Bourgeron;Simon Baron-Cohen;

10.1101/050682 — Genomics — Posted on 2016-04-28

39 Whole genome sequencing identifies independent outbreaks of Shigellosis in 2010 and 2011 in La Pampa Province, Argentina

Isabel Chinen;Marcelo Galas;Ezequiel Tuduri;Maria Rosa Vinas;Carolina Carbonari;Anabella Della Gaspera;Daniela Napoli;David M Aanensen;Silvia Argimon;Nicholas R Thomson;Darren Hughes;Stephen Baker;Caterina Guzman;Verri;Matthew TG Holden;Alejandra M Abdala;Lucia P Alvarez;Beatriz Alvez;Rosana Barros;Shirley Budall;Constanza Campano;Luciana S Chamosa;Paul Cheddie;Daniel Cisterna;Denise De Belder;Milena Dropa;David Durand;Alan Elena;Gustavo Fontecha;Claudia Huber;Ana Paula Lemos;Luciano Melli;Roxana Elizabeth Paul;Lesly Suarez;Julian Torres Flores;Josefina Campos;

10.1101/049940 — Genomics — Posted on 2016-04-28

40 No ′small genome attraction′ artifact: A response to Harish et al. ′Did viruses evolve as a distinct supergroup from common ancestors of cells?′

Arshan Nasir;Kyung Mo Kim;Gustavo Caetano-Anolles;

10.1101/050179 — Evolutionary Biology — Posted on 2016-04-29

41 No ′small genome attraction′ artifact: A response to Harish et al. ′Did viruses evolve as a distinct supergroup from common ancestors of cells?′

Arshan Nasir;Kyung Mo Kim;Gustavo Caetano-Anolles;

10.1101/050179 — Evolutionary Biology — Posted on 2016-04-28

42 Understanding properties of the master effector of phage shock operon in Mycobacterium tuberculosis via bioinformatics approach

Zarrin Basharat;Azra Yasmin;

10.1101/050047 — Bioinformatics — Posted on 2016-04-28

43 Accurate classification of protein subcellular localization from high throughput microscopy images using deep learning

Tanel Pärnamaa;Leopold Parts;

10.1101/050757 — Bioinformatics — Posted on 2016-04-28

44 Recombineering in C. elegans: genome editing using in vivo assembly of linear DNAs

Alexandre Paix;Helen Schmidt;Geraldine Seydoux;

10.1101/050815 — Bioengineering — Posted on 2016-04-28

45 Proportion of cocaine-coding neurons in the orbitofrontal cortex determines individual drug preferences

Karine Guillem;Serge H Ahmed;

10.1101/050872 — Animal Behavior and Cognition — Posted on 2016-04-28

46 Predicting Drug Synergy and Antagonism from Genetic Interaction Neighborhoods

Jonathan H Young;Edward M Marcotte;

10.1101/050567 — Systems Biology — Posted on 2016-04-27

47 Is most published research really false?

Jeffrey T Leek;Leah R Jager;

10.1101/050575 — Scientific Communication and Education — Posted on 2016-04-27

48 Stay tuned: active amplification tunes tree cricket ears to track temperature-dependent song frequency

Natasha Mhatre;Gerald Pollack;Andrew Mason;

10.1101/050583 — Physiology — Posted on 2016-04-27

49 Induction of Kanizsa contours requires awareness of the inducing context

Theodora Banica;D. Sam Schwarzkopf;

10.1101/050526 — Neuroscience — Posted on 2016-04-27

50 Paradoxical signaling regulates structural plasticity in dendritic spines

Padmini Rangamani;Michael G. Levy;Shahid M. Khan;George Oster;

10.1101/050492 — Neuroscience — Posted on 2016-04-27

51 Carbon nanotube electrodes for retinal implants: a study of structural and functional integration over time

Cyril G Eleftheriou;Jonas B Zimmermann;Henrik D Kjeldsen;Moshe David-Pur;Yael Hanein;Evelyne Sernagor;

10.1101/050633 — Neuroscience — Posted on 2016-04-27

52 Subiculum neurons map the current axis of travel

Jacob M Olson;Kanyanat Tongprasearth;Douglas M Nitz;

10.1101/050641 — Neuroscience — Posted on 2016-04-27

53 Origins and evolution of trans-splicing of bursicon in mosquitos

Scott W Roy;

10.1101/050625 — Genetics — Posted on 2016-04-28

54 Origins and evolution of trans-splicing of bursicon in mosquitos

Scott W Roy;

10.1101/050625 — Genetics — Posted on 2016-04-27

55 A Model for Brain Life History Evolution

Mauricio Gonzalez-Forero;Timm Faulwasser;Laurent Lehmann;

10.1101/050534 — Evolutionary Biology — Posted on 2016-04-27

56 Nuclear and Plastid DNA Sequence-based Molecular Phylogeography of Salvadora oleoides (Salvadoraceae) in Punjab, India

Felix Bast;Navreet Kaur;

10.1101/050518 — Evolutionary Biology — Posted on 2016-04-27

57 Amyloid β-peptides interfere with mitochondrial preprotein import competence by a co-aggregation process

Giovanna Cenini;Cornelia Rüb;Michael Bruderek;Wolfgang Voos;

10.1101/050617 — Cell Biology — Posted on 2016-04-27

58 Membrane tension is a key determinant of bud morphology in clathrin-mediated endocytosis

Julian E. Hassinger;George Oster;David G. Drubin;Padmini Rangamani;

10.1101/050484 — Biophysics — Posted on 2016-04-27

59 MALT: Fast alignment and analysis of metagenomic DNA sequence data applied to the Tyrolean Iceman

Alexander Herbig;Frank Maixner;Kirsten I. Bos;Albert Zink;Johannes Krause;Daniel H. Huson;

10.1101/050559 — Bioinformatics — Posted on 2016-04-27

60 Ayurvedic Amalaki Rasayana promotes improved stress tolerance and thus has anti-aging effects in Drosophila melanogaster

Vibha Dwivedi;Subhash C. Lakhotia;

10.1101/050476 — Cell Biology — Posted on 2016-04-26

61 Different speciation types meet in a Mediterranean genus: the biogeographic history of Cymbalaria (Plantaginaceae)

Pau Carnicero;Llorens Saez;Nuria Garcia-Jacas;Merce Galbany-Casals;

10.1101/050369 — Plant Biology — Posted on 2016-04-26

62 Alpha Phase Dynamics Predict Age-Related Visual Working Memory Decline

Tam Tran;Nicole C Hoffner;Sara C LaHue;Lisa Tseng;Bradley Voytek;

10.1101/050450 — Neuroscience — Posted on 2016-04-26

63 Reconstructing contact network parameters from viral phylogenies

Rosemary M McCloskey;Richard H Liang;Art FY Poon;

10.1101/050435 — Epidemiology — Posted on 2016-04-26

64 A data acquisition and analysis pipeline for scanning angle interference microscopy

Catherine B Carbone;Ronald D Vale;Nico Stuurman;

10.1101/050468 — Biophysics — Posted on 2016-04-26

65 Charting Improvements in US Registry HLA Typing Ambiguity Using a Typing Resolution Score

Vanja Paunić;Loren Gragert;Joel Schneider;Carlheinz Mueller;Martin Maiers;

10.1101/050443 — Bioinformatics — Posted on 2016-04-26

66 Assessing the accuracy of Approximate Bayesian Computation approaches to infer epidemiological parameters from phylogenies

Emma Saulnier;Samuel Alizon;Olivier Gascuel;

10.1101/050211 — Bioinformatics — Posted on 2016-04-26

67 Human infants’ understanding of social imitation: Inferences of affiliation from third party observations

Lindsey J Powell;Elizabeth S Spelke;

10.1101/050385 — Animal Behavior and Cognition — Posted on 2016-04-26

68 Arabidopsis cobra protein binds to glucan chains with higher affinity than to cellulose

Nadav Sorek;Chris Somerville;

10.1101/050427 — Plant Biology — Posted on 2016-04-26

69 Pan-retinal characterisation of Light Responses from Ganglion Cells in the Developing Mouse Retina

Gerrit Hilgen;Sahar Pirmoradian;Daniela Pamplona;Pierre Kornprobst;Bruno Cessac;Matthias H Hennig;Evelyne Sernagor;

10.1101/050393 — Neuroscience — Posted on 2016-04-26

70 Genetic and chemical differentiation of Campylobacter coli and Campylobacter jejuni lipooligosaccharide pathways

Alejandra Culebro;Joana Revez;Ben Pascoe;Yasmin Friedmann;Matthew D Hitchings;Jacek Stupak;Samuel K Sheppard;Jianjun Li;Mirko Rossi;

10.1101/050328 — Microbiology — Posted on 2016-04-26

71 C19ORF66 is an Interferon-Stimulated Gene (ISG) which Inhibits Human Immunodeficiency Virus-1

Weidong Xiong;Deisy Contreras;Joseph Ignatius Irudayam;Ayub Ali;Otto O Yang;Vaithilingaraja Arumugaswami;

10.1101/050310 — Immunology — Posted on 2016-04-26

72 NGS-based assay for frequent newborn inherited diseases: from development to implementation

Tamara Simakova;Anton Bragin;Maria Zaytseva;Carla Clemente;Magdalena Lewicka;Jose Machado;Jose Costa;Margaret Hughes;Christiane Hertz-Fowler;Nika Petrova;Alexander Polyakov;Rena Zinchenko;Elena Kondratyeva;Alexander Pavlov;

10.1101/050419 — Genomics — Posted on 2016-04-26

73 Recurrently deregulated lncRNAs associated with HCC tumorigenesis and metastasis revealed by genomic, epigenomic and transcriptomic profiling in paired primary tumor and PVTT samples

Yang Yang;Lei Chen;Jin Gu;Hanshuo Zhang;Jiapei Yuan;Qiuyu Lian;Guishuai Lv;Siqi Wang;Yang Wu;Yu-Cheng T. Yang;Dongfang Wang;Yang Liu;Jing Tang;Guijuan Luo;Yang Li;Long Hu;Xinbao Sun;Dong Wang;Mingzhou Guo;Qiaoran Xi;Jianzhong Xi;Hongyang Wang;Michael Q. Zhang;Zhi John Lu;

10.1101/050377 — Genomics — Posted on 2016-04-26

74 Nano Random Forests to mine protein complexes and their relationships in quantitative proteomics data

Luis F Montano-Gutierrez;Shinya Ohta;Georg Kustatscher;William C Earnshaw;Juri Rappsilber;

10.1101/050302 — Cell Biology — Posted on 2016-04-26

75 Persistent vulnerability to relapse despite complete extinction of cocaine craving

Paul Girardeau;Sylvia Navailles;Audrey Durand;Caroline Vouillac-Mendoza;Karine Guillem;Serge H Ahmed;

10.1101/050401 — Animal Behavior and Cognition — Posted on 2016-04-26

76 Two frequency bands contain the most stimulus-related information in visual cortex

Christopher M Lewis;Conrado A Bosman;Nicolas M Brunet;Bruss Lima;Mark J. Roberts;Thilo Womelsdorf;Peter de Weerd;Sergio Neuenschwander;Wolf Singer;Pascal Fries;

10.1101/049718 — Neuroscience — Posted on 2016-04-26

77 The fitness burden imposed by synthesizing quorum sensing signals

Avika Ruparell;Jean Frederic Dubern;Cartherine A Ortori;Freya Harrison;Nigel M Halliday;Abigail Emtage;Mahmoud Ashawesh;Charles A Laughton;Steve Diggle;Paul Williams;David A Barrett;Kim Rachael Hardie;

10.1101/050229 — Microbiology — Posted on 2016-04-26

78 Convergent evolution of sperm gigantism and the developmental origins of sperm size variability in Caenorhabditis nematodes

Anne Vielle;Nicolas Callemeyn-Torre;Clotilde Gimond;Nausicaa Poullet;Jeremy C Gray;Asher D Cutter;Christian Braendle;

10.1101/050252 — Evolutionary Biology — Posted on 2016-04-26

79 Pan-cancer analysis of the metabolic reaction network

Francesco Gatto;Jens Nielsen;

10.1101/050187 — Cancer Biology — Posted on 2016-04-26

80 Automated structure refinement of macromolecular assemblies from cryo-EM maps using Rosetta

Ray Yu-Ruei Wang;Yifan Song;Benjamin Barad;Yifan Cheng;James Fraser;Frank DiMaio;

10.1101/050286 — Biochemistry — Posted on 2016-04-26

81 Comparative analysis of protein evolution and RNA structural changes in the genome of pre-epidemic and epidemic Zika virus

Arunachalam Ramaiah;Lei Dai;Deisy Contreras;Sanjeev Sinha;Ren Sun;Vaithilingaraja Arumugaswami;

10.1101/050278 — Microbiology — Posted on 2016-04-26

82 Cell Painting, a high-content image-based assay for morphological profiling using multiplexed fluorescent dyes

Mark-Anthony Bray;Shantanu Singh;Han Han;Chadwick T Davis;Blake Borgeson;Cathy Hartland;Maria Kost-Alimova;Sigrun M Gustafsdottir;Christopher C Gibson;Anne E Carpenter;

10.1101/049817 — Systems Biology — Posted on 2016-04-28

83 Cell Painting, a high-content image-based assay for morphological profiling using multiplexed fluorescent dyes

Mark-Anthony Bray;Shantanu Singh;Han Han;Chadwick T Davis;Blake Borgeson;Cathy Hartland;Maria Kost-Alimova;Sigrun M Gustafsdottir;Christopher C Gibson;Anne E Carpenter;

10.1101/049817 — Systems Biology — Posted on 2016-04-25

84 Chromatin structure shapes the search process of transcription factors

Neslihan Avcu;Nacho Molina;

10.1101/050146 — Systems Biology — Posted on 2016-04-25

85 Longitudinal assessment of sputum microbiome by sequencing of the 16S rRNA gene in non-CF bronchiectasis patients

Michael J Cox;Elena M Turek;Catherine Hennessy;Ghazala K Mirza;Phillip L James;Meg Coleman;Andrew Jones;Robert Wilson;Diana Bilton;William O C M Cookson;Miriam F Moffatt;Michael Loebinger;

10.1101/050237 — Microbiology — Posted on 2016-04-25

86 Dengue Virus Antibodies Enhance Zika Virus Infection

Lauren M Paul;Eric R Carlin;Meagan M Jenkins;Amanda L Tan;Carolyn M Barcellona;Cindo O Nicholson;Lydie Trautmann;Scott F Michael;Sharon Isern;

10.1101/050112 — Immunology — Posted on 2016-04-25

87 The rate and effect of de novo mutations in natural populations of Arabidopsis thaliana

Moises Exposito-Alonso;Claude Becker;Verena J. Schuenemann;Ella Reitter;Claudia Setzer;Radka Slovak;Benjamin Brachi;Joerg Hagmann;Dominik G. Grimm;Chen Jiahui;Wolfgang Busch;Joy Bergelson;Rob W. Ness;Johannes Krause;Hernan A. Burbano;Detlef Weigel;

10.1101/050203 — Genomics — Posted on 2016-04-25

88 Integrated Biomedical System

Darrell O. Ricke;James Harper;Anna Shcherbina;Nelson Chiu;

10.1101/050138 — Bioinformatics — Posted on 2016-04-25

89 Predictability of Genetic Interactions from Functional Gene Modules

Jonathan H Young;Edward M Marcotte;

10.1101/049627 — Genetics — Posted on 2016-04-25

90 Annotation Regression for Genome-Wide Association Studies with an Application to Psychiatric Genomic Consortium Data

Sunyoung Shin;Sunduz Keles;

10.1101/049932 — Bioinformatics — Posted on 2016-04-25

91 Population Genetic Analysis of the DARC Locus (Duffy) Reveals Adaptation from Standing Variation Associated with Malaria Resistance in Humans

Kimberly F. McManus;Angela Taravella;Brenna Henn;Carlos D. Bustamante;Martin Sikora;Omar E. Cornejo;

10.1101/050096 — Genomics — Posted on 2016-04-25

92 The Epidemiology and Transmissibility of Zika Virus in Girardot and San Andres Island, Colombia

Diana Patricia Rojas;Natalie E. Dean;Yang Yang;Eben Kenah;Juliana Quintero;Simon Tomasi;Erika L. Ramirez;Yendy Kelly;Carolina Castro;Gabriel Carrasquilla;M. Elizabeth Halloran;Ira M. Longini;

10.1101/049957 — Epidemiology — Posted on 2016-04-24

93 Discovery of a persistent Zika virus lineage in Bahia, Brazil

Samia Naccache;Julien Theze;Silvia I Sardi;Sneha Somasekar;Alexander L Greninger;Antonio C Bandeira;Gubio S Campos;Laura B Tauro;Nuno R Faria;Oliver G Pybus;Charles Y Chiu;

10.1101/049916 — Epidemiology — Posted on 2016-04-24

94 PODOCYTURIA mRNAs: EARLIER AND SUPERIOR PREDICTORS OF CARDIOVASCULAR OUTCOMES

Assaad A. Eid;Robert H. Habib;Ahmed Abdel Fattah;Nour Al Jalbout;Kamal F. Badr;

10.1101/050039 — Pathology — Posted on 2016-04-23

95 Direct binding to RPA-coated ssDNA allows recruitment of the ATR activator TopBP1 to sites of DNA damage

Julyana Acevedo;Shan Yan;Matt Michael;

10.1101/050013 — Molecular Biology — Posted on 2016-04-23

96 New insights in host-associated microbial diversity with broad and accurate taxonomic resolution

Matthew T. Agler;Alfredo Mari;Nina Dombrowski;Stéphane Hacquard;Eric M. Kemen;

10.1101/050005 — Microbiology — Posted on 2016-04-23

97 Activated Ras expression in eye discs with altered levels of hsrω lncRNA causes JNK-induced Dilp8 secretion and reduces post-pupal ecdysone leading to early pupal death in Drosophila

Mukulika Ray;Subhash C. Lakhotia;

10.1101/049882 — Developmental Biology — Posted on 2016-04-23

98 Scalable Production of Human Erythrocytes from Induced Pluripotent Stem Cells

Ying Wang;Yongxing Gao;Chaoxie He;Zhaohui Ye;Sharon Gerecht;Linzhao Cheng;

10.1101/050021 — Bioengineering — Posted on 2016-04-23

99 Olfactory perception of chemically diverse molecules

Andreas Keller;Leslie B Vosshall;

10.1101/049999 — Neuroscience — Posted on 2016-04-23

100 Radical changes persist longer in the absence of sex

Joel Sharbrough;Meagan Luse;Jeffrey L Boore;John M Logsdon;Maurine Neiman;

10.1101/049924 — Evolutionary Biology — Posted on 2016-04-23

101 The hippocampus generalizes across memories that share item and context information

Laura A Libby;J Daniel Ragland;Charan Ranganath;

10.1101/049965 — Neuroscience — Posted on 2016-04-22

102 Lactobacillus plantarum is a pathobiont for adult Drosophila.

David Fast;Aashna Duggal;Edan Foley;

10.1101/049981 — Microbiology — Posted on 2016-04-22

103 Wedding higher taxonomic ranks with metabolic signatures coded in prokaryotic genomes

Gregorio Iraola;Hugo Naya;

10.1101/044115 — Microbiology — Posted on 2016-04-22

104 The discovery potential of RNA processing profiles

Amadis Pages;Ivan Dotu;Roderic Guigo;Eduardo Eyras;

10.1101/049809 — Genomics — Posted on 2016-04-22

105 Toxicity Management in CAR T cell therapy for B-ALL: Mathematical modelling as a new avenue for improvement.

Shalla Hanson;David Robert Grimes;Jake P. Taylor-King;Benedikt Bauer;Pravnam I. Warman;Ziv Frankenstein;Artem Kaznatcheev;Michael J. Bonassar;Vincent L. Cannataro;Zeinab Y. Motawe;Ernesto A. B. F. Lima;Sungjune Kim;Marco L. Davila;Arturo Araujo;

10.1101/049908 — Cancer Biology — Posted on 2016-04-22

106 Using Ordinary Differential Equations to Explore Cancer-Immune Dynamics and Tumor Dormancy

Kathleen Wilkie;Philip Hahnfeldt;Lynn Hlatky;

10.1101/049874 — Cancer Biology — Posted on 2016-04-22

107 Htm1p-Pdi1p is a folding sensitive mannosidase that marks N-glycoproteins for ER-associated protein degradation

Yi-Chang Liu;Danica Galonić Fujimori;Jonathan S. Weissman;

10.1101/049825 — Biochemistry — Posted on 2016-04-22

108 Epigenetic control of phenotypic plasticity in a filamentous fungus Neurospora crassa

Ilkka Kronholm;Hanna Johannesson;Tarmo Ketola;

10.1101/049726 — Genetics — Posted on 2016-04-22

109 Different Evolutionary Paths to Complexity for Small and Large Populations of Digital Organisms

Thomas LaBar;Christoph Adami;

10.1101/049767 — Evolutionary Biology — Posted on 2016-04-22

110 Fused regression for multi-source gene regulatory network inference

Kari Y. Lam;Zachary M. Westrick;Christian Müller;Lionel Christiaen;Richard Bonneau;

10.1101/049775 — Bioinformatics — Posted on 2016-04-22

111 Cytokine and Leukocyte Profiling Reveal Pro-Inflammatory and Autoimmune Features in Frontotemporal Dementia Patients

Philipp A. Jaeger;Trisha M. Stan;Eva Czirr;Markus Britschgi;Daniela Berdnik;Ruo-Pan Huang;Bradley F. Boeve;Adam L. Boxer;NiCole Finch;Gabriela K. Fragiadakis;Neill R. Graff-Radford;Ruochun Huang;Hudson Johns;Anna Karydas;David S. Knopman;Michael Leipold;Holde T. Maecker;Zachary Miller;Ronald Petersen;Rosa Rademakers;Chung-Huan Sun;Steve Younkin;Bruce L. Miller;Tony Wyss-Coray;

10.1101/049791 — Neuroscience — Posted on 2016-04-22

112 HDAC inhibition protects degenerating cone photoreceptors in vivo

Dragana Trifunovic;Blanca Arango-Gonzalez;Antonella Comitato;Melanie Barth;Ayse Sahaboglu;Eva del Amo;Manoj Kulkarni;Stefanie Hauck;Marius Ueffing;Arto Urtti;Yvan Arsenijevic;Marius Ueffing;Francois Paquet-Durand;

10.1101/049742 — Neuroscience — Posted on 2016-04-22

113 From what we perceive to what we remember: Characterizing representational dynamics of visual memorability

Seyed-Mahdi Khaligh-Razavi;Wilma A. Bainbridge;Dimitrios Pantazis;Aude Oliva;

10.1101/049700 — Neuroscience — Posted on 2016-04-22

114 The Pseudomonas aeruginosa PSL polysaccharide is a social but non-cheatable trait in biofilms

Yasuhiko Irie;Aled Roberts;Kasper N Kragh;Vernita D Gordon;Jamie Hutchison;Rosalind J Allen;Gavin Melaugh;Thomas Bjarnsholt;Stuart A West;Stephen P Diggle;

10.1101/049783 — Microbiology — Posted on 2016-04-22

115 The Pseudomonas aeruginosa PSL polysaccharide is a social but non-cheatable trait in biofilms

Yasuhiko Irie;Aled Roberts;Kasper N Kragh;Vernita D Gordon;Jamie Hutchison;Rosalind J Allen;Gavin Melaugh;Thomas Bjarnsholt;Stuart A West;Stephen P Diggle;

10.1101/049783 — Microbiology — Posted on 2016-04-22

116 Fast, scalable and accurate differential expression analysis for single cells

Debarka Sengupta;Nirmala Arul Rayan;Michelle Lim;Bing Lim;Shyam Prabhakar;

10.1101/049734 — Genomics — Posted on 2016-04-22

117 The Higher Plant Plastid Complex I (NDH) is a Reversible Proton Pump that increases ATP production by Cyclic Electron Flow Around Photosystem I

Deserah D Strand;Nicholas Fisher;David M. Kramer;

10.1101/049759 — Biochemistry — Posted on 2016-04-22

118 Vasculogenesis Potential of Mesenchymal and Endothelial Stem Cells Isolated from Various Human Tissues.

Rokhsareh Rohban;Nathalie Etchart;Thomas Pieber;

10.1101/049668 — Systems Biology — Posted on 2016-04-21

119 Transplantation of Endothelial Progenitor Cells Solely Leads to Development of Functional Neo-vessels in vivo.

Rokhsareh Rohban;Nathalie Etchart;Thomas Pieber;

10.1101/049650 — Systems Biology — Posted on 2016-04-21

120 Transcriptional bursting explains the noise-versus-mean relationship in mRNA and protein levels

Roy D. Dar;Sydney M. Schaffer;Siddarth S. Dey;Jonathan E. Foley;Abhyudai Singh;Brandon S. Razooky;Adam P. Arkin;David V. Schafer;Michael L. Simpson;Arjun Raj;Leor S. Weinberger;

10.1101/049528 — Systems Biology — Posted on 2016-04-21

121 Inferring node dates from tip dates in fossil Canidae: the importance of tree priors

Nicholas Joseph Matzke;April Wright;

10.1101/049643 — Evolutionary Biology — Posted on 2016-04-22

122 Inferring node dates from tip dates in fossil Canidae: the importance of tree priors

Nicholas Joseph Matzke;April Wright;

10.1101/049643 — Evolutionary Biology — Posted on 2016-04-21

123 Mortality Selection in a Genetic Sample and Implications for Association Studies

Benjamin W Domingue;Daniel W Belsky;Amal Harrati;Dalton Conley;David Weir;Jason Boardman;

10.1101/049635 — Genetics — Posted on 2016-04-21

124 Inferring intrinsic and extrinsic noise from a dual fluorescent reporter

Erik van Nimwegen;

10.1101/049486 — Bioinformatics — Posted on 2016-04-21

125 The Prevalence of Inappropriate Image Duplication in Biomedical Research Publications

Elisabeth M Bik;Arturo Casadevall;Ferric C Fang;

10.1101/049452 — Scientific Communication and Education — Posted on 2016-04-20

126 Adapterama IV: Sequence Capture of Dual-digest RADseq Libraries with Identifiable Duplicates (RADcap)

Sandra Hoffberg;Troy J Kieran;Julian M Catchen;Alison Devault;Brant C Faircloth;Rodney Mauricio;Travis C Glenn;

10.1101/044651 — Genetics — Posted on 2016-04-20

127 Sanctions, partner recognition, and variation in mutualistic symbiosis

Jeremy B Yoder;Peter Tiffin;

10.1101/049593 — Evolutionary Biology — Posted on 2016-04-28

128 Sanctions, partner recognition, and variation in mutualistic symbiosis

Jeremy B Yoder;Peter Tiffin;

10.1101/049593 — Evolutionary Biology — Posted on 2016-04-20

129 Evolution of mating types driven by purifying selection against mitochondrial mutations

Arunas L Radzvilavicius;

10.1101/049577 — Evolutionary Biology — Posted on 2016-04-20

130 Noise Control In Gene Regulatory Networks With Negative Feedback

Michael Hinczewski;Dave Thirumalai;

10.1101/049502 — Biophysics — Posted on 2016-04-20

131 Robust cell tracking in epithelial tissues through identification of maximum common subgraphs

Jochen Kursawe;Rémi Bardenet;Jeremiah J Zartman;Ruth E Baker;Alexander George Fletcher;

10.1101/049551 — Bioengineering — Posted on 2016-04-20

132 Power and sample size calculations for fMRI studies based on the prevalence of active peaks.

Joke Durnez;Jasper Degryse;Beatrijs Moerkerke;Ruth Seurinck;Vanessa Sochat;Russell Poldrack;Thomas Nichols;

10.1101/049429 — Neuroscience — Posted on 2016-04-20

133 First detection of Zika virus in neotropical primates in Brazil: a possible new reservoir.

Silvana Favoretto;Danielle Araujo;Danielle Oliveira;Nayle Duarte;Flavio Mesquita;Paolo Zanotto;Edison Durigon;

10.1101/049395 — Microbiology — Posted on 2016-04-20

134 FGMP: assessing fungal genome completeness and gene content

Ousmane Hamadoun Cisse;Jason Eric Stajich;

10.1101/049619 — Genomics — Posted on 2016-04-20

135 Estimating seven coefficients of pairwise relatedness using population genomic data

Matthew Ackerman;Parul Johri;Ken Spitze;Thomas Doak;Kimberly Young;Michael Lynch;Sen Xu;

10.1101/049411 — Evolutionary Biology — Posted on 2016-04-20

136 Curvature Analysis of Estrogen Receptor Positive Breast Cancer Under PI3K Inhibition

Romeil Sandhu;Eneda Toska;Maurizio Scaltriti;Jose Baselga;Joseph Deasy;Jung Hun Oh;Sarah Tannenbaum;Allen Tannenbaum;

10.1101/049437 — Cancer Biology — Posted on 2016-04-20

137 Prevalence, phenotype and architecture of developmental disorders caused by de novo mutation

Jeremy F McRae;Stephen Clayton;Tomas W Fitzgerald;Joanna Kaplanis;Elena Prigmore;Diana Rajan;Alejandro Sifrim;Stuart Aitken;Nadia Akawi;Mohsan Alvi;Kirsty Ambridge;Daniel M Barrett;Tanya Bayzetinova;Philip Jones;Wendy D Jones;Daniel King;Netravathi Krishnappa;Laura E Mason;Tarjinder Singh;Adrian R Tivey;Munaza Ahmed;Uruj Anjum;Hayley Archer;Ruth Armstrong;Jana Awada;Meena Balasubramanian;Siddharth Banka;Diana Baralle;Angela Barnicoat;Paul Batstone;David Baty;Chris Bennett;Jonathan Berg;Birgitta Bernhard;A Paul Bevan;Maria Bitner-Glindzicz;Edward Blair;Moira Blyth;David Bohanna;Louise Bourdon;D

10.1101/049056 — Genetics — Posted on 2016-04-22

138 Prevalence, phenotype and architecture of developmental disorders caused by de novo mutation

10.1101/049056 — Genetics — Posted on 2016-04-20

139 From Visual Exploration to Storytelling and Back Again

Samuel Gratzl;Alexander Lex;Nils Gehlenborg;Nicola Cosgrove;Marc Streit;

10.1101/049585 — Bioinformatics — Posted on 2016-04-20

140 Ex-STORM: Expansion Single Molecule Nanoscopy

Hu Cang;Zhisong Tong;Paolo Beuzer;Qing Ye;Josh Axelrod;Zhenmin Hong;

10.1101/049403 — Bioengineering — Posted on 2016-04-25

141 Ex-STORM: Expansion Single Molecule Nanoscopy

Hu Cang;Zhisong Tong;Paolo Beuzer;Qing Ye;Josh Axelrod;Zhenmin Hong;

10.1101/049403 — Bioengineering — Posted on 2016-04-20

142 Local versus global effects of isoflurane anesthesia on visual processing in the fly brain

Dror Cohen;Oressia H Zalucki;Bruno van Swinderen;Naotsugu Tsuchiya;

10.1101/049460 — Neuroscience — Posted on 2016-04-20

143 Promoter architecture and sex-specific gene expression in the microcrustacean Daphnia pulex revealed by large-scale profiling of 5′-mRNA ends

R. Taylor Raborn;Ken Spitze;Volker P Brendel;Michael Lynch;

10.1101/047894 — Genomics — Posted on 2016-04-28

144 Promoter architecture and sex-specific gene expression in the microcrustacean Daphnia pulex revealed by large-scale profiling of 5′-mRNA ends

R. Taylor Raborn;Ken Spitze;Volker P Brendel;Michael Lynch;

10.1101/047894 — Genomics — Posted on 2016-04-20

145 CD44 Controls Endothelial Proliferation and Functions as Endogenous Inhibitor of Angiogenesis

Anne Pink;Marianna Skolnaja;Taavi Paell;Andres Valkna;

10.1101/049494 — Cell Biology — Posted on 2016-04-20

146 Inferring expressed genes by whole-genome sequencing of plasma DNA

Peter Ulz;Gerhard G Thallinger;Martina Auer;Ricarda Graf;Karl Kashofer;Stephan W Jahn;Luca Abete;Gunda Pristauz;Edgar Petru;Jochen B Geigl;Ellen Heitzer;Michael R Speicher;

10.1101/049478 — Cancer Biology — Posted on 2016-04-22

147 Inferring expressed genes by whole-genome sequencing of plasma DNA

Peter Ulz;Gerhard G Thallinger;Martina Auer;Ricarda Graf;Karl Kashofer;Stephan W Jahn;Luca Abete;Gunda Pristauz;Edgar Petru;Jochen B Geigl;Ellen Heitzer;Michael R Speicher;

10.1101/049478 — Cancer Biology — Posted on 2016-04-20

148 Temporal microbiome road-maps guided by perturbations

Beatriz García-Jiménez;Mark Wilkinson;

10.1101/049510 — Bioinformatics — Posted on 2016-04-20

149 CNView: a visualization and annotation tool for copy number variation from whole-genome sequencing

Ryan L Collins;Matthew R Stone;Harrison Brand;Joseph T Glessner;Michael E Talkowski;

10.1101/049536 — Bioinformatics — Posted on 2016-04-20

150 Remotely-sensed tornado signatures indicate an ecological threshold for eagle nest destruction

Jeremy D Ross;Cheryl L Cavert;Lena C Larsson;

10.1101/049387 — Ecology — Posted on 2016-04-20

151 Periodic actin structures in neuronal axons are required to maintain microtubules

Yue Qu;Ines Hahn;Stephen Webb;Andreas Prokop;

10.1101/049379 — Neuroscience — Posted on 2016-04-19

152 Allele Surfing Promotes Microbial Adaptation from Standing Variation

Matti Gralka;Fabian Stiewe;Fred Farrell;Wolfram Moebius;Bartlomiej Waclaw;Oskar Hallatschek;

10.1101/049353 — Evolutionary Biology — Posted on 2016-04-19

153 Ten simple rules for managing high-throughput nucleotide sequencing data

Rutger Aldo Vos;

10.1101/049338 — Bioinformatics — Posted on 2016-04-19

154 Nonsinusoidal oscillations underlie pathological phase-amplitude coupling in the motor cortex in Parkinson’s disease

Scott R Cole;Erik J Peterson;Roemer van der Meij;Coralie de Hemptinne;Philip A Starr;Bradley Voytek;

10.1101/049304 — Neuroscience — Posted on 2016-04-19

155 Ocular Motoneuron Pools Develop Along a Dorsoventral Axis in Zebrafish, Danio rerio

Marie R. Greaney;Ann E. Privorotskiy;Kristen P. D'Elia;David Schoppik;

10.1101/049296 — Neuroscience — Posted on 2016-04-19

156 Cosmid based mutagenesis causes genetic instability in Streptomyces coelicolor, as shown by targeting of the lipoprotein signal peptidase gene

John Tyson Munnoch;David A Widdick;Govind Chandra;Iain C Sutcliffe;Tracy Palmer;Matthew I Hutchings;

10.1101/049320 — Genetics — Posted on 2016-04-19

157 Guided self-organization recapitulates tissue architecture in a bioengineered brain organoid model

Madeline A Lancaster;Nina S Corsini;Thomas R Burkard;Juergen A Knoblich;

10.1101/049346 — Developmental Biology — Posted on 2016-04-19

158 LEM2 and CHMP7 function in ESCRT-dependent nuclear envelope closure in yeast and human cells

Mingyu Gu;Opal S Chen;Dollie Lajoie;Mark S Ladinsky;Michael J Redd;Linda Nikolova;Pamela J Bjorkman;Katharine S Ullman;Wesley I Sundquist;Adam Frost;

10.1101/049312 — Cell Biology — Posted on 2016-04-19

159 Impact of knowledge accumulation on pathway enrichment analysis

Lina Wadi;Mona Meyer;Joel Weiser;Lincoln D Stein;Juri Reimand;

10.1101/049288 — Bioinformatics — Posted on 2016-04-19

160 Using Y chromosomal haplogroups in genetic association studies and suggested implications

A. Mesut Erzurumluoglu;Denis Baird;Tom G Richardson;Nicholas J Timpson;Santiago Rodriguez;

10.1101/048504 — Genetics — Posted on 2016-04-19

161 Metabolic signatures of birth weight in 18288 adolescents and adults

Peter Wurtz;Qin Wang;Marjo Niironen;Tuulia Tynkkynen;Mika Tiainen;Fotios Drenos;Antti J Kangas;Pasi Soininen;Michael Skilton;Kauko Heikkila;Anneli Pouta;Mika Kahonen;Terho Lehtimaki;Richard J Rose;Eero Kajantie;Markus Perola;Jaakko Kaprio;Johan Eriksson;Olli Raitakari;Debbie A Lawlor;George Davey Smith;Marjo-Riitta Jarvelin;Mika Ala-Korpela;Kirsi Auro;

10.1101/049247 — Systems Biology — Posted on 2016-04-18

162 Robust generation of transgenic mice by hypotonic shock mediated transgene delivery in testicular germ cells

Abul Usmani;Nirmalya Ganguli;Subodh Jain;Nilanjana Ganguli;Rajesh Kumar Sarkar;Mayank Choubey;Hironmoy Sarkar;Subeer Majumdar;

10.1101/049239 — Genomics — Posted on 2016-04-18

163 High-Throughput Sequencing of Transposable Elements Insertions Provides Evidence for Adaptive Evolution of the Invasive Asian Tiger Mosquito Towards Temperate Environments

Clement Goubert;Helene Henri;Guillaume Minard;Claire Valiente Moro;Patrick Mavingui;Cristina Vieira;Matthieu Boulesteix;

10.1101/049197 — Genomics — Posted on 2016-04-26

164 High-Throughput Sequencing of Transposable Elements Insertions Provides Evidence for Adaptive Evolution of the Invasive Asian Tiger Mosquito Towards Temperate Environments

Clement Goubert;Helene Henri;Guillaume Minard;Claire Valiente Moro;Patrick Mavingui;Cristina Vieira;Matthieu Boulesteix;

10.1101/049197 — Genomics — Posted on 2016-04-18

165 Membrane binding by CHMP7 coordinates ESCRT-III dependent nuclear envelope reformation

Jeremy Carlton;Anna Perdrix;Yolanda Olmos;

10.1101/049221 — Cell Biology — Posted on 2016-04-18

166 Exploiting Homeostatic Repopulation to Increase DC Vaccine Efficacy in Multiple Myeloma

Chandler Gatenbee;Nuria Folguera-Blasco;Charlie Daneils;Jill Gallaher;Russ Rockne;Casey Adams;Michael Nicholson;Eleni Maniati;John Kennedy;Kimberly Luddy;Frederick L. Locke;Mark Robertson-Tessi;

10.1101/049072 — Cancer Biology — Posted on 2016-04-22

167 Exploiting Homeostatic Repopulation to Increase DC Vaccine Efficacy in Multiple Myeloma

Chandler Gatenbee;Nuria Folguera-Blasco;Charlie Daneils;Jill Gallaher;Russ Rockne;Casey Adams;Michael Nicholson;Eleni Maniati;John Kennedy;Kimberly Luddy;Frederick L. Locke;Mark Robertson-Tessi;

10.1101/049072 — Cancer Biology — Posted on 2016-04-18

168 Heat*seq: an interactive web tool for high-throughput sequencing experiment comparison with public data

Guillaume Devailly;Anna Mantsoki;Anagha Joshi;

10.1101/049254 — Bioinformatics — Posted on 2016-04-18

169 Omics Discovery Index - Discovering and Linking Public Omics Datasets

Yasset Perez-Riverol;Mingze Bai;Felipe Leprevost;Silvano Squizzato;Young Mi Park;Ove Kenneth Haug;Adam J. Carroll;Dylan Spalding;Justin Paschall;Mingxun Wang;Noemi del-Toro;Tobias Ternent;Peng Zhang;Nicola Buso;Nuno Bandeira;Eric Deutsch;David S. Campbell;Ronald C. Beavis;Reza Salek;Alexey Nesvizhskii;Susanna-Assunta Sansone;Christoph Steinbeck;Rodrigo Lopez;Juan Antonio Vizcaino;Peipei Ping;Henning Hermjakob;

10.1101/049205 — Bioinformatics — Posted on 2016-04-18

170 High-resolution interrogation of functional elements in the noncoding genome

Neville E Sanjana;Jason Wright;Kaijie Zheng;Ophir Shalem;Pierre Fontanillas;Julia Joung;Christine Cheng;Aviv Regev;Feng Zhang;

10.1101/049130 — Molecular Biology — Posted on 2016-04-18

171 High-resolution interrogation of functional elements in the noncoding genome

Neville E Sanjana;Jason Wright;Kaijie Zheng;Ophir Shalem;Pierre Fontanillas;Julia Joung;Christine Cheng;Aviv Regev;Feng Zhang;

10.1101/049130 — Molecular Biology — Posted on 2016-04-18

172 Mega-analysis of 31,396 individuals from 6 countries uncovers strong gene-environment interaction for human fertility

Felix C Tropf;Renske M Verweij;Peter J van der Most;Gert Stulp;Andrew Bakshi;Daniel A Briley;Matthew Robinson;Anastasia Numan;Tonu Esko;Andres Metspalu;Sarah E. Medland;Nicholas G. Martin;Harold Snieder;S Hong Lee;Melinda C Mills;

10.1101/049163 — Genetics — Posted on 2016-04-18

173 Did viruses evolve as a distinct supergroup from common ancestors of cells?

Ajith Harish;Aare Abroi;Julian Gough;Charles Kurland;

10.1101/049171 — Evolutionary Biology — Posted on 2016-04-18

174 Chm7 and Heh1 form a nuclear envelope subdomain for nuclear pore complex quality control

Brant M Webster;David J Thaller;Jens Jaeger;Sarah E Ochmann;C. Patrick Lusk;

10.1101/049148 — Cell Biology — Posted on 2016-04-18

175 Discrete step sizes of molecular motors lead to bimodal non-Gaussian velocity distributions under force

Huong Vu;Shaon Chakrabarti;Michael Hinczewski;Dave Thirumalai;

10.1101/049064 — Biophysics — Posted on 2016-04-18

176 Alternative Growth Behavior of Mycobacterium Avium Subspecies and Staphylococci with Implications for Clinical Microbiology and Blood Culture

Peilin Zhang;Lawrence M Minardi;J. Todd Kuenstner;Steve M Zekan;

10.1101/049031 — Microbiology — Posted on 2016-04-16

177 Eukaryotic Association Module in Phage WO Genomes from Wolbachia

Sarah R Bordenstein;Seth R Bordenstein;

10.1101/049049 — Genomics — Posted on 2016-04-16

178 Analysis of shared heritability in common disorders of the brain

Verneri Anttila;Brendan Bulik-Sullivan;Hilary Kiyo Finucane;Jose Bras;Laramie Duncan;Valentina Escott-Price;Guido Falcone;Padhraig Gormley;Rainer Malik;Nikolaos Patsopoulos;Stephan Ripke;Raymond Walters;Zhi Wei;Dongmei Yu;Phil Lee;IGAP consortium;IHGC consortium;ILAE Consortium on Complex Epilepsies;IMSGC consortium;IPDGC consortium;METASTROKE and ICH Studies of the ISGC;ADHD Working Group of the PGC;Anorexia Nervosa Working Group of the PGC;ASD Working Group of the PGC;Bipolar Disorders Working Group of the PGC;Major Depressive Disorder Working Group of the PGC;OCD and TS Working Group of the

10.1101/048991 — Genetics — Posted on 2016-04-16

179 A statistical guide to the design of deep mutational scanning experiments

Sebastian Matuszewski;Marcel Eckhardt Hildebrandt;Ana-Hermina Ghenu;Jeffrey D. Jensen;Claudia Bank;

10.1101/048892 — Evolutionary Biology — Posted on 2016-04-16

180 Network-based Computational Drug Combination Prediction

Fuhai Li;Lei Huang;Jianting Sheng;Stephen TC Wong;

10.1101/049015 — Bioinformatics — Posted on 2016-04-16

181 Cortical rhythms are modulated by respiration

Detlef H Heck;Samuel S McAfee;Yu Liu;Abbas Babajani-Feremi;Roozbeh Rezaie;Walter J Freeman;James W Wheless;Andrew C Papanicolaou;Miklos Ruszinko;Robert Kozma;

10.1101/049007 — Neuroscience — Posted on 2016-04-16

182 An experimental evaluation of drug-induced mutational meltdown as an antiviral treatment strategy

Claudia Bank;Nicholas Renzette;Ping Liu;Sebastian Matuszewski;Hyunjin Shim;Matthieu Foll;Daniel N.A. Bolon;Konstantin B. Zeldovich;Timothy F. Kowalik;Robert W. Finberg;Jennifer P. Wang;Jeffrey D. Jensen;

10.1101/048934 — Evolutionary Biology — Posted on 2016-04-16

183 Metavisitor, a suite of Galaxy tools for simple and rapid detection and discovery of viruses in deep sequence data

Guillaume Carissimo;Marius van den Beek;Juliana Pegoraro;Kenneth D Vernick;Christophe Antoniewski;

10.1101/048983 — Bioinformatics — Posted on 2016-04-20

184 Metavisitor, a suite of Galaxy tools for simple and rapid detection and discovery of viruses in deep sequence data

Guillaume Carissimo;Marius van den Beek;Juliana Pegoraro;Kenneth D Vernick;Christophe Antoniewski;

10.1101/048983 — Bioinformatics — Posted on 2016-04-16

185 Time-resolved dual RNA-Seq reveals extensive rewiring of lung epithelial and pneumococcal transcriptomes during early infection

Rieza Aprianto;Jelle Slager;Siger Holsappel;Jan-Willem Veening;

10.1101/048959 — Microbiology — Posted on 2016-04-22

186 Time-resolved dual RNA-Seq reveals extensive rewiring of lung epithelial and pneumococcal transcriptomes during early infection

Rieza Aprianto;Jelle Slager;Siger Holsappel;Jan-Willem Veening;

10.1101/048959 — Microbiology — Posted on 2016-04-15

187 A simple offspring-to-mother size ratio predicts post-reproductive lifespan

George Maliha;Coleen T Murphy;

10.1101/048835 — Genetics — Posted on 2016-04-15

188 A model of compound heterozygous, loss-of-function alleles is broadly consistent with observations from complex-disease GWAS datasets

Jaleal Sanjak;Anthony D Long;Kevin R Thornton;

10.1101/048819 — Genetics — Posted on 2016-04-15

189 On the importance of skewed offspring distributions and background selection in viral population genetics

Kristen K. Irwin;Stefan Laurent;Sebastian Matuszewski;Severine Vuilleumier;Louise Ormond;Hyunjin Shim;Claudia Bank;Jeffrey D. Jensen;

10.1101/048975 — Evolutionary Biology — Posted on 2016-04-15

190 Contact statistics highlight distinct organizing principles of proteins and RNA

Lei Liu;Changbong Hyeon;

10.1101/048686 — Biophysics — Posted on 2016-04-15

191 plasmidSPAdes: Assembling Plasmids from Whole Genome Sequencing Data

Dmitry Antipov;Nolan Hartwick;Max Shen;Mikhail Raiko;Alla Lapidus;Pavel Pevzner;

10.1101/048942 — Bioinformatics — Posted on 2016-04-20

192 plasmidSPAdes: Assembling Plasmids from Whole Genome Sequencing Data

Dmitry Antipov;Nolan Hartwick;Max Shen;Mikhail Raiko;Alla Lapidus;Pavel Pevzner;

10.1101/048942 — Bioinformatics — Posted on 2016-04-17

193 plasmidSPAdes: Assembling Plasmids from Whole Genome Sequencing Data

Dmitry Antipov;Nolan Hartwick;Max Shen;Mikhail Raiko;Alla Lapidus;Pavel Pevzner;

10.1101/048942 — Bioinformatics — Posted on 2016-04-15

194 Development of prokaryotic cell-free systems for synthetic biology

Abel C Chiao;Richard M Murray;Zachary Z Sun;

10.1101/048710 — Synthetic Biology — Posted on 2016-04-15

195 Adaptation-induced blindness is orientation-tuned and monocular

Deborah Apthorp;Scott Griffiths;David Alais;John Cass;

10.1101/048918 — Neuroscience — Posted on 2016-04-15

196 Enrichment of long DNA fragments from mixed samples for Nanopore sequencing

Sabine E Eckert;Jackie Z-M Chan;Darren Houniet;the PATHSEEK consortium2;Judy Breuer;Graham Speight;

10.1101/048850 — Genomics — Posted on 2016-04-15

197 Ten Simple Rules for Taking Advantage of git and GitHub

Yasset Perez-Riverol;Laurent Gatto;Rui Wang;Timo Sachsenberg;Julian Uszkoreit;Felipe Leprevost;Christian Fufezan;Tobias Ternent;Stephen J Eglen;Daniel S. S Katz;Tom J Pollard;Alexander Konovalov;Robert M Flight;Kai Blin;Juan Antonio Vizcaino;

10.1101/048744 — Bioinformatics — Posted on 2016-04-15

198 A comparative analysis of 5-azacytidine and zebularine induced DNA demethylation

Patrick T Griffin;Chad E Niederhuth;Robert J. Schmitz;

10.1101/048884 — Genomics — Posted on 2016-04-15

199 Evidence of a recombination rate valley in human regulatory domains

Yaping Liu;Abhishek Sarkar;Manolis Kellis;

10.1101/048827 — Genomics — Posted on 2016-04-15

200 Levels and patterns of genetic diversity differ between two closely related endemic Arabidopsis species

Julie Jacquemin;Nora Hohmann;Matteo Buti;Alberto Selvaggi;Thomas Müller;Marcus A Koch;Karl J Schmid;

10.1101/048785 — Genomics — Posted on 2016-04-15

201 Selective pressures on C4 photosynthesis evolution in grasses through the lens of optimality

Haoran Zhou;Brent Helliker;Erol Akcay;

10.1101/048900 — Evolutionary Biology — Posted on 2016-04-15

202 On the (un-)predictability of a large intragenic fitness landscape

Claudia Bank;Sebastian Matuszewski;Ryan T. Hietpas;Jeffrey D. Jensen;

10.1101/048769 — Evolutionary Biology — Posted on 2016-04-17

203 On the (un-)predictability of a large intragenic fitness landscape

Claudia Bank;Sebastian Matuszewski;Ryan T. Hietpas;Jeffrey D. Jensen;

10.1101/048769 — Evolutionary Biology — Posted on 2016-04-15

204 Emergence of increased frequency and severity of multiple infections by viruses due to spatial clustering of hosts

Bradford P Taylor;Catherine J Penington;Joshua S Weitz;

10.1101/048876 — Ecology — Posted on 2016-04-15

205 Salt Effects on the Thermodynamics of a Frameshifting RNA Pseudoknot under Tension

Naoto Hori;Natalia A. Denesyuk;Dave Thirumalai;

10.1101/048801 — Biophysics — Posted on 2016-04-15

206 k-BOOM: A Bayesian approach to ontology structure inference, with applications in disease ontology construction

Christopher J Mungall;Sebastian Koehler;Peter Robinson;Ian Holmes;Melissa Haendel;

10.1101/048843 — Bioinformatics — Posted on 2016-04-15

207 mazEF mediated programmed cell death in Escherichia coli: is it?

Bhaskar Chandra Mohan Ramisetty;Swati Raj;Dimpy Ghosh;

10.1101/048728 — Microbiology — Posted on 2016-04-14

208 Deep sequencing analysis of the circadian transcriptome of the jewel wasp Nasonia vitripennis

Nathaniel J Davies;Eran Tauber;

10.1101/048736 — Genomics — Posted on 2016-04-16

209 Deep sequencing analysis of the circadian transcriptome of the jewel wasp Nasonia vitripennis

Nathaniel J Davies;Eran Tauber;

10.1101/048736 — Genomics — Posted on 2016-04-15

210 Deep sequencing analysis of the circadian transcriptome of the jewel wasp Nasonia vitripennis

Nathaniel J Davies;Eran Tauber;

10.1101/048736 — Genomics — Posted on 2016-04-14

211 A Possible Link Between Pyriproxyfen and Microcephaly

Dan Evans;Fred Nijhout;Raphael Parens;Alfredo J. Morales;Yaneer Bar-Yam;

10.1101/048538 — Pharmacology and Toxicology — Posted on 2016-04-13

212 Unsupervised spike sorting for large scale, high density multielectrode arrays

Gerrit Hilgen;Martino Sorbaro;Sahar Pirmoradian;Jens-Oliver Muthmann;Ibolya Kepiro;Simona Ullo;Cesar Juarez Ramirez;Alessandro Maccione;Luca Berdondini;Vittorio Murino;Diego Sona;Francesca Cella Zanacchi;Upinder Bhalla;Evelyne Sernagor;Matthias H Hennig;

10.1101/048645 — Neuroscience — Posted on 2016-04-13

213 Transient structural variations alter gene expression and quantitative traits in Schizosaccharomyces pombe.

Daniel Charlton Jeffares;Clemency Jolly;Mimoza Hoti;Doug Speed;Charalampos Rallis;Liam Shaw;Francois Balloux;Christophe Dessimoz;Jurg Bahler;Fritz Sedlazeck;

10.1101/047266 — Genomics — Posted on 2016-04-13

214 Meta-GWAS Accuracy and Power (MetaGAP) calculator shows that hiding heritability is partially due to imperfect genetic correlations across studies

R. de Vlaming;A. Okbay;C.A. Rietveld;M. Johannesson;P.K.E. Magnusson;A.G. Uitterlinden;F.J.A. van Rooij;A. Hofman;P.J.F. Groenen;A.R. Thurik;P.D. Koellinger;

10.1101/048322 — Genetics — Posted on 2016-04-13

215 Network-based metabolite ratios for an improved functional characterization of genome-wide association study results

Jan Krumsiek;Ferdinand Stueckler;Karsten Suhre;Christian Gieger;Tim D Spector;Nicole Soranzo;Gabi Kastenmueller;Fabian J Theis;

10.1101/048512 — Genetics — Posted on 2016-04-13

216 Zika virus, a new threat for Europe?

Henri JUPILLE;Goncalo SEIXAS;Laurence MOUSSON;Carla SOUSA;Anna-Bella FAILLOUX;

10.1101/048454 — Ecology — Posted on 2016-04-13

217 Assembly of Long Error-Prone Reads Using de Bruijn Graphs

Yu Lin;Jeffrey Yuan;Mikhail Kolmogorov;Max W. Shen;Pavel A. Pevzner;

10.1101/048413 — Bioinformatics — Posted on 2016-04-13

218 Variance Adaptive Shrinkage (vash): Flexible Empirical Bayes estimation of variances

Mengyin Lu;Matthew Stephens;

10.1101/048660 — Bioinformatics — Posted on 2016-04-13

219 Posterior inferotemporal cortex cells use multiple visual pathways to complement fine and coarse discriminations

Carlos R Ponce;Stephen G. Lomber;Margaret S Livingstone;

10.1101/048561 — Neuroscience — Posted on 2016-04-13

220 Concordance Among Indices of Intrinsic Brain Function: Inter-Individual Variation and Temporal Dynamics Perspectives

Chao-Gan Yan;Zhen Yang;Stanley Colcombe;Xi-Nian Zuo;Michael Milham;

10.1101/048405 — Neuroscience — Posted on 2016-04-13

221 Inventory of cultivatable populations of S-cycling, fermentative, Fe-reducing, and aerobic heterotrophic bacteria from salt marsh sediments.

David Emerson;Cynthia Lydell;

10.1101/048611 — Microbiology — Posted on 2016-04-13

222 Bidirectional transcription marks accessible chromatin and is not specific to enhancers

Robert S Young;Yatendra Kumar;Wendy A Bickmore;Martin S Taylor;

10.1101/048629 — Genomics — Posted on 2016-04-13

223 Wild-type U2AF1 antagonizes the splicing program characteristic of U2AF1-mutant tumors and is required for cell survival

Dennis Liang Fei;Hayley Motowski;Rakesh Chatrikhi;Sameer Prasad;Jovian Yu;Shaojian Gao;Clara Kielkopf;Robert K Bradley;Harold Varmus;

10.1101/048553 — Cancer Biology — Posted on 2016-04-20

224 Wild-type U2AF1 antagonizes the splicing program characteristic of U2AF1-mutant tumors and is required for cell survival

Dennis Liang Fei;Hayley Motowski;Rakesh Chatrikhi;Sameer Prasad;Jovian Yu;Shaojian Gao;Clara Kielkopf;Robert K Bradley;Harold Varmus;

10.1101/048553 — Cancer Biology — Posted on 2016-04-16

225 Wild-type U2AF1 antagonizes the splicing program characteristic of U2AF1-mutant tumors and is required for cell survival

Dennis Liang Fei;Hayley Motowski;Rakesh Chatrikhi;Sameer Prasad;Jovian Yu;Shaojian Gao;Clara Kielkopf;Robert K Bradley;Harold Varmus;

10.1101/048553 — Cancer Biology — Posted on 2016-04-13

226 A Transferable Model For Chromosome Architecture

Michele Di Pierro;Bin Zhang;Erez Lieberman Aiden;Peter G. Wolynes;José N. Onuchic;

10.1101/048439 — Biophysics — Posted on 2016-04-13

227 Long Range Force Transmission in Fibrous Matrices Enabled by Tension-Driven Alignment of Fibers

Hailong Wang;Abhilash AS;Christopher S Chen;Rebecca G Wells;Vivek B Shenoy;

10.1101/048579 — Bioengineering — Posted on 2016-04-13

228 Temperature-dependent changes in neuronal dynamics in a patient with an SCN1A mutation and hyperthermia induced seizures

Colin Peters;Richard E Rosch;Elaine Hughes;Peter C Ruben;

10.1101/048520 — Neuroscience — Posted on 2016-04-13

229 Retrotransposon proliferation coincident with the evolution of dioecy in Asparagus

Alex Harkess;Francesco Mercati;Loredana Abbate;Michael McKain;J. Chris Pires;Tea Sala;Francesco Sunseri;Agostino Falavigna;Jim Leebens-Mack;

10.1101/048462 — Evolutionary Biology — Posted on 2016-04-13

230 Variation and evolution of the glutamine-rich repeat region of Drosophila Argonaute-2

William H Palmer;Darren J Obbard;

10.1101/048595 — Evolutionary Biology — Posted on 2016-04-17

231 Variation and evolution of the glutamine-rich repeat region of Drosophila Argonaute-2

William H Palmer;Darren J Obbard;

10.1101/048595 — Evolutionary Biology — Posted on 2016-04-13

232 Using Google Earth to improve management of threatened limestone karst ecosystems in Peninsular Malaysia

Thor-Seng Liew;Liz Price;Reuben Clements Gopalasamy;

10.1101/048397 — Ecology — Posted on 2016-04-13

233 Third-generation sequencing and the future of genomics

Hayan Lee;James Gurtowski;Shinjae Yoo;Maria Nattestad;Shoshana Marcus;Sara Goodwin;W. Richard McCombie;Michael Schatz;

10.1101/048603 — Bioinformatics — Posted on 2016-04-13

234 Reversible Polymorphism-Aware Phylogenetic Models and their Application to Tree Inference

Dominik Schrempf;Bui Quang Minh;Nicola De Maio;Arndt von Haeseler;Carolin Kosiol;

10.1101/048496 — Bioinformatics — Posted on 2016-04-13

235 Assessment of pharmacogenomic agreement

Zhaleh Safikhani;Nehme El-Hachem;Rene Quevedo;Petr Smirnov;Anna Goldenberg;Nicolai Juul Birkbak;Christopher E Mason;Christos Hatzis;Leming Shi;Hugo JWL Aerts;John Quackenbush;Benjamin Haibe-Kains;

10.1101/048470 — Bioinformatics — Posted on 2016-04-13

236 Effects of variable mutation rates and epistasis on the distribution of allele frequencies in humans

Arbel Harpak;Anand Bhaskar;Jonathan K Pritchard;

10.1101/048421 — Genomics — Posted on 2016-04-13

237 Extracting a low-dimensional description of multiple gene expression datasets reveals a potential driver for tumor-associated stroma in ovarian cancer

Safiye Celik;Benjamin A Logsdon;Stephanie Battle;Charles W Drescher;Mara Rendi;David Hawkins;Su-In Lee;

10.1101/048215 — Systems Biology — Posted on 2016-04-13

238 Transcriptome data analysis reveals correlation between developmentally altered gene expression and offspring phenotype in epigenetic inheritance

Abhay Sharma;

10.1101/048256 — Systems Biology — Posted on 2016-04-13

239 Rapid hyperosmotic-induced Ca2+ responses in Arabidopsis thaliana exhibit sensory potentiation and establish involvement of plastidial KEA transporters

Aaron Benjamin Stephan;Eric Yang;Hans-Henning Kunz;Julian I. Schroeder;

10.1101/048330 — Plant Biology — Posted on 2016-04-13

240 The Interaction of Genotype and Environment Determines Variation in the Maize Kernel Ionome

Alexandra B Asaro;Gregory R Ziegler;Cathrine Ziyomo;Owen A Hoekenga;Brian P Dilkes;Ivan Baxter;

10.1101/048173 — Plant Biology — Posted on 2016-04-15

241 The Interaction of Genotype and Environment Determines Variation in the Maize Kernel Ionome

Alexandra B Asaro;Gregory R Ziegler;Cathrine Ziyomo;Owen A Hoekenga;Brian P Dilkes;Ivan Baxter;

10.1101/048173 — Plant Biology — Posted on 2016-04-14

242 The Interaction of Genotype and Environment Determines Variation in the Maize Kernel Ionome

Alexandra B Asaro;Gregory R Ziegler;Cathrine Ziyomo;Owen A Hoekenga;Brian P Dilkes;Ivan Baxter;

10.1101/048173 — Plant Biology — Posted on 2016-04-13

243 The Interaction of Genotype and Environment Determines Variation in the Maize Kernel Ionome

Alexandra B Asaro;Gregory R Ziegler;Cathrine Ziyomo;Owen A Hoekenga;Brian P Dilkes;Ivan Baxter;

10.1101/048173 — Plant Biology — Posted on 2016-04-13

244 Sharing brain mapping statistical results with the neuroimaging data model

Camille Maumet;Tibor Auer;Alexander Bowring;Gang Chen;Samir Das;Guillaume Flandin;Satrajit Ghosh;Tristan Glatard;Krzysztof J. Gorgolewski;Karl G. Helmer;Mark Jenkinson;David Keator;Nolan Nolan Nichols;Jean-Baptiste Poline;Richard Reynolds;Vanessa Sochat;Jessica Turner;Thomas E. Nichols;

10.1101/041798 — Neuroscience — Posted on 2016-04-13

245 Detecting distortions of peripherally-presented letter stimuli under crowded conditions

Thomas S. A. Wallis;Saskia Tobias;Matthias Bethge;Felix A. Wichmann;

10.1101/048272 — Neuroscience — Posted on 2016-04-13

246 A switching cost for motor planning

Jean-Jacques Orban de Xivry;Philippe Lefevre;

10.1101/047621 — Neuroscience — Posted on 2016-04-13

247 Characterization of a Male Reproductive Transcriptome for Peromyscus eremicus (Cactus mouse)

Lauren L Kordonowy;Matthew D MacManes;

10.1101/048348 — Genomics — Posted on 2016-04-13

248 Subtle stratification confounds estimates of heritability from rare variants

Gaurav Bhatia;Alexander Gusev;Po-Ru Loh;Hilary Kiyo Finucane;Bjarni J Vilhjalmsson;Stephan Ripke;SCZ Working Group of the Psychiatric Genomics Cons;Shaun Purcell;Eli Stahl;Mark Daly;Teresa R de Candia;Sang Hong Lee;Benjamin M Neale;Matthew C Keller;Noah A Zaitlen;Bogdan Pasaniuc;Nick Patterson;Jian Yang;Alkes L Price;

10.1101/048181 — Genetics — Posted on 2016-04-13

249 The effects of population size histories on estimates of selection coefficients from time-series genetic data

Ethan M Jewett;Matthias Steinrücken;Yun S. Song;

10.1101/048355 — Evolutionary Biology — Posted on 2016-04-13

250 Life on the edge: diet preferences reflect adaptation to drought in Neotoma fuscipes

Brendan J Barrett;Arielle Crews;Mary Brooke McElreath;

10.1101/048363 — Ecology — Posted on 2016-04-13

251 Life on the edge: diet preferences reflect adaptation to drought in Neotoma fuscipes

Brendan J Barrett;Arielle Crews;Mary Brooke McElreath;

10.1101/048363 — Ecology — Posted on 2016-04-13

252 Real-time observation of DNA recognition and rejection by the RNA-guided endonuclease Cas9

Digvijay Singh;Samuel H. Sternberg;Jingyi Fei;Taekjip Ha;Jennifer A. Doudna;

10.1101/048371 — Biophysics — Posted on 2016-04-13

253 GenRank: an R/Bioconductor package for prioritization of candidate genes

Chakravarthi Kanduri;Irma Jarvela;

10.1101/048264 — Bioinformatics — Posted on 2016-04-13

254 Allele-Specific Quantification of Structural Variations in Cancer Genomes

Yang Li;Shiguo Zhou;David C. Schwartz;Jian Ma;

10.1101/048207 — Bioinformatics — Posted on 2016-04-13

255 Minimal Data Needed for Valid & Accurate Image-Based fMRI Meta-Analysis

Camille Maumet;Thomas E. Nichols;

10.1101/048249 — Neuroscience — Posted on 2016-04-20

256 Minimal Data Needed for Valid & Accurate Image-Based fMRI Meta-Analysis

Camille Maumet;Thomas E. Nichols;

10.1101/048249 — Neuroscience — Posted on 2016-04-12

257 DNA from fecal immunochemical test can replace stool for microbiota-based colorectal cancer screening

Nielson T Baxter;Charles C Koumpouras;Mary AM Rogers;Mack T Ruffin;Patrick Schloss;

10.1101/048389 — Microbiology — Posted on 2016-04-12

258 Medical subject heading (MeSH) annotations illuminate maize genetics and evolution

Timothy Beissinger;Gota Morota;

10.1101/048132 — Genomics — Posted on 2016-04-13

259 Medical subject heading (MeSH) annotations illuminate maize genetics and evolution

Timothy Beissinger;Gota Morota;

10.1101/048132 — Genomics — Posted on 2016-04-12

260 Microevolution of Bank Voles (Myodes glareolus) at Neutral and Immune Related Genes During Multiannual Dynamic Cycles: Consequences for Puumala hantavirus Epidemiology

Adelaide Dubois;Maxime Galan;Jean-Francois Cosson;Bertrand Gauffre;Heikki Henttonen;Jukka Niemimaa;Maria Razzauti;Liina Voutilainen;Renaud Vitalis;Emmanuel Guivier;Nathalie Charbonnel;

10.1101/048082 — Evolutionary Biology — Posted on 2016-04-12

261 Chromosome-wide simulations uncover folding pathway and 3D organization of interphase chromosomes

Davide Michieletto;Davide Marenduzzo;Ajazul Wani;

10.1101/048116 — Biophysics — Posted on 2016-04-12

262 Fast haplotype matching in very large cohorts using the Li and Stephens model

Gerton Lunter;

10.1101/048280 — Bioinformatics — Posted on 2016-04-12

263 Conformal growth of Arabidopsis leaves

Graeme Mitchison;

10.1101/048199 — Plant Biology — Posted on 2016-04-21

264 Conformal growth of Arabidopsis leaves

Graeme Mitchison;

10.1101/048199 — Plant Biology — Posted on 2016-04-12

265 The contribution of alternative splicing probability to the coding expansion of the genome

Fernando Carrillo Oesterreich;Hugo Bowne-Anderson;Jonathon Howard;

10.1101/048124 — Systems Biology — Posted on 2016-04-11

266 Unconscious integration of multisensory bodily inputs in the peripersonal space shapes bodily self-consciousness

Roy Salomon;Jean Paul Noel;Marta Lukowska;Nathan Faivre;Thomas Metzinger;Andrea Serino;Olaf Blanke;

10.1101/048108 — Neuroscience — Posted on 2016-04-11

267 Benchmarking of the Oxford Nanopore MinION sequencing for quantitative and qualitative assessment of cDNA populations

Spyros Oikonomopoulos;Yu Chang Wang;Haig Djambazian;Dunarel Badescu;Jiannis Ragoussis;

10.1101/048074 — Genomics — Posted on 2016-04-11

268 Do aye-ayes echolocate? Studying convergent genomic evolution in a primate auditory specialist

Richard J Bankoff;Michael Jerjos;Baily Hohman;Elise Lauterbur;Logan Kistler;George H Perry;

10.1101/048165 — Evolutionary Biology — Posted on 2016-04-11

269 Reconstructing phylogenies of metastatic cancers

Johannes G Reiter;Alvin P Makohon-Moore;Jeffrey M Gerold;Ivana Bozic;Krishnendu Chatterjee;Christine A Iacobuzio-Donahue;Bert Vogelstein;Martin A Nowak;

10.1101/048157 — Cancer Biology — Posted on 2016-04-11

270 A method for downstream analysis of gene set enrichment results facilitates the biological interpretation of vaccine efficacy studies

Yan Tan;Jernej Godec;Felix Wu;Pablo Tamayo;Jill P Mesirov;W Nicholas Haining;

10.1101/043158 — Bioinformatics — Posted on 2016-04-11

271 Functional enrichments of disease variants across thousands of independent loci in eight diseases

Abhishek K Sarkar;Lucas D. Ward;Manolis Kellis;

10.1101/048066 — Genetics — Posted on 2016-04-11

272 The mutational landscape of EGFR-, MYC-, and Kras- driven genetically-engineered mouse models of lung adenocarcinoma

David McFadden;Katerina Politi;Arjun Bhutkar;Frances K Chen;Xiaoling Song;Mono Pirun;Philip M Santiago;Caroline Kim;James T Platt;Emily Lee;Emily Hodges;Adam P Rosebrock;Roderick Bronson;Nicholas D Socci;Gregory Hannon;Tyler Jacks;Harold Varmus;

10.1101/048058 — Cancer Biology — Posted on 2016-04-11

273 All alloparents are not equally valuable: Primary breeders and group size explain group reproductive success in cooperatively breeding primates

Mrinalini Watsa;Gideon A. Erkenswick;Efstathia Robakis;

10.1101/047969 — Zoology — Posted on 2016-04-10

274 The thalamus is a gateway for stimulus-evoked activity in the habenula

Ruey Kuang Cheng;Seetha Krishnan;Qian Lin;David G. C. Hildebrand;Isaac H. Bianco;Caroline Kibat;Suresh Jesuthasan;

10.1101/047936 — Neuroscience — Posted on 2016-04-10

275 Phenotypic and genomic analysis of P elements in natural populations of Drosophila melanogaster

Iryna Kozeretska;Vladyslav Bondarenko;Vadym Shulga;Svitlana Serga;Andrii Rozhok;Oleksandra Protsenko;Michael G. Nelson;Casey Bergman;

10.1101/047910 — Genomics — Posted on 2016-04-10

276 Phylogenetic incongruence and the origins of cardenolide-resistant forms of Na+,K+-ATPase in North American Danaus butterflies

Matthew L Aardema;Peter Andolfatto;

10.1101/048033 — Evolutionary Biology — Posted on 2016-04-10

277 In-silico analysis of Salmonella typhimurium and E.coli Methionyl tRNA synthetase at primary, secondary, tertiary level with protein disorder and functional association of differences

Prabhakar B. Ghorpade;Pooja V. Kadu;Amit Pandey;Yogesh Banger;Bhaskar Sharma;

10.1101/048009 — Bioinformatics — Posted on 2016-04-10

278 Analyzing Repast Symphony models in R with RRepast package

Antonio Prestes García;Alfonso Rodríguez-Patón;

10.1101/047985 — Bioinformatics — Posted on 2016-04-10

279 AKT: Ancestry and Kinship Toolkit

Rudy Arthur;Ole Schulz-Trieglaff;Anthony J Cox;Jared Michael O'Connell;

10.1101/047829 — Bioinformatics — Posted on 2016-04-10

280 Formation of novel PRDM9 allele by indel events as possible trigger for tarsier-anthropoid split

Sacha Heerschop;Hans Zischler;Stefan Merker;Dyah Perwitasari-Farajallah;Christine Driller;

10.1101/047803 — Evolutionary Biology — Posted on 2016-04-09

281 Tree inference for single-cell data

Katharina Jahn;Jack Kuipers;Niko Beerenwinkel;

10.1101/047795 — Cancer Biology — Posted on 2016-04-09

282 Prediction of glyphosate resistance level based on EPSPS gene copy number in Kochia scoparia

Todd A. Gaines;Abigail L. Barker;Eric L. Patterson;Philip Westra;Eric P. Westra;Robert G. Wilson;Andrew R. Kniss;

10.1101/047878 — Plant Biology — Posted on 2016-04-09

283 Nucleosome fragility is associated with future transcriptional response to developmental cues and stress in C. elegans

Tess E Jeffers;Jason D Lieb;

10.1101/047860 — Genomics — Posted on 2016-04-09

284 Analysis of clinical Bordetella pertussis isolates using whole genome sequences reveals novel genomic regions associated with recent outbreaks in the United States of America

Glen Otero;Benjamin M Althouse;Samuel Scarpino;

10.1101/047886 — Genomics — Posted on 2016-04-09

285 Insights into telomerase action from high-throughput sequencing of S. pombe telomeres

Henrietta W Bennett;Na Liu;Yan Hu;Megan C King;

10.1101/047837 — Genomics — Posted on 2016-04-09

286 Complex heterochrony underlies the evolution of hermaphrodite self-fertility and sex allocation in experimental C. elegans populations

Nausicaa Poullet;Anne Vielle;Clotilde Gimond;Sara Carvalho;Henrique Teotonio;Christian Braendle;

10.1101/047811 — Evolutionary Biology — Posted on 2016-04-09

287 Multi-scale responses of scattering layers to environmental variability in Monterey Bay, California

Samuel S Urmy;John K Horne;

10.1101/047902 — Ecology — Posted on 2016-04-09

288 SLICER: Inferring Branched, Nonlinear Cellular Trajectories from Single Cell RNA-seq Data

Joshua Welch;Alexander Hartemink;Jan F Prins;

10.1101/047845 — Bioinformatics — Posted on 2016-04-09

289 Discovery of a Natural Microsporidian Pathogen with a Broad Tissue Tropism in Caenorhabditis elegans

Robert J Luallen;Aaron W Reinke;Linda Tong;Michael R Botts;Marie-Anne Felix;Emily R Troemel;

10.1101/047720 — Microbiology — Posted on 2016-04-08

290 Approach-induced biases in human information sampling

Laurence T Hunt;Robb B Rutledge;Nishantha Malalasekera;Steven W Kennerley;Raymond J Dolan;

10.1101/047787 — Animal Behavior and Cognition — Posted on 2016-04-08

291 Prevalent Presence of Periodic Actin-spectrin-based Membrane Skeleton in a Broad Range of Neuronal Cell Types and Animal Species

Jiang He;Ruobo Zhou;Zhuhao Wu;Monica Carrasco;Peri Kurshan;Jonathan Farley;David Simon;Guiping Wang;Boran Han;Junjie Hao;Evan Heller;Marc Freeman;Kang Shen;Tom Maniatis;Marc Tessier-Lavigne;Xiaowei Zhuang;

10.1101/045856 — Neuroscience — Posted on 2016-04-08

292 Immune DNA signature of T-cell infiltration in breast tumor exomes

Eric Levy;Rachel Marty;Valentina Garate-Calderon;Brian Woo;Michelle Dow;Ricardo Armisen;Hannah Carter;Olivier Harismendy;

10.1101/047753 — Genomics — Posted on 2016-04-08

293 Live Imaging of muscle histolysis in Drosophila metamorphosis

Yadav Kuleesha;Wee Choo Puah;Martin Wasser;

10.1101/047761 — Developmental Biology — Posted on 2016-04-08

294 Fluorescence resonance energy transfer and protein-induced fluorescence enhancement as synergetic multi-scale molecular rulers

Evelyn Ploetz;Eitan Lerner;Florence Husada;Martin Roelfes;SangYoon Chung;Johannes Hohlbein;Shimon Weiss;Thorben Cordes;

10.1101/047779 — Biophysics — Posted on 2016-04-08

295 Assembly and Activation of Dynein-Dynactin by the Cargo Adaptor Protein Hook3

Courtney M. Schroeder;Ronald D. Vale;

10.1101/047605 — Biochemistry — Posted on 2016-04-08

296 Physiological and biochemical changes associated with experimental dehydration in the desert adapted cactus mouse, Peromyscus eremicus

Lauren Kordonowy;Kaelina Lombardo;Hannah Green;Sarah LaCourse;Evice Bolton;Matthew MacManes;

10.1101/047704 — Zoology — Posted on 2016-04-08

297 Fate of glair glands and oocytes in unmated crayfish: a comparison between gonochoristic slough crayfish and parthenogenetic marbled crayfish

Günter Vogt;

10.1101/047654 — Zoology — Posted on 2016-04-08

298 Evidence and role for bacterial mucin degradation in cystic fibrosis airway disease

Jeffrey M Flynn;David Niccum;Jordan M Dunitz;Ryan C Hunter;

10.1101/047670 — Microbiology — Posted on 2016-04-08

299 Enhanced functional divergence of duplicate genes several million years after gene duplication in the Arabidopsis lineage

Kousuke Hanada;Ayumi Tezuka;Masafumi Nozawa;Yutaka Suzuki;Sumio Sugano;Atsushi J Nagano;Motomi Ito;Shi-Ichi Morinaga;

10.1101/047639 — Genomics — Posted on 2016-04-08

300 Whole genome SNP typing to investigate methicillin-resistant Staphylococcus aureus carriage in a health-care provider as the source of multiple surgical site infections.

Chandler Roe;Kimberly Horn;Elizabeth Driebe;Jolene R Bowers;Joel A Terriquez;Paul Keim;David M Engelthaler;

10.1101/047597 — Genomics — Posted on 2016-04-08

301 Can the metacommunity data matrix predict changes in species incidence and abundance?

Donald M. Waller;Erika L. Mudrak;David A. Rogers;

10.1101/047696 — Ecology — Posted on 2016-04-08

302 A Transcriptional Lineage of the Early C. elegans Embryo

Sophia C Tintori;Erin Osborne Nishimura;Patrick Golden;Jason D Lieb;Bob Goldstein;

10.1101/047746 — Developmental Biology — Posted on 2016-04-08

303 Crossover in the dynamics of cell wall growth controls bacterial division times

Shiladitya Banerjee;Klevin Lo;Thomas Kuntz;Matthew K Daddysman;Aaron R Dinner;Norbert F Scherer;

10.1101/047589 — Biophysics — Posted on 2016-04-08

304 PALADIN:Protein Alignment for Functional Profiling Whole Metagenome Shotgun Data

Anthony Westbrook;Jordan Ramsdell;Taruna Aggarwal;Louisa Normington;Daniel Bergeron;W Kelley Thomas;Matthew MacManes;

10.1101/047712 — Bioinformatics — Posted on 2016-04-08

305 Bayesian Markov models consistently outperform PWMs at predicting motifs in nucleotide sequences

Matthias Siebert;Johannes Soeding;

10.1101/047647 — Bioinformatics — Posted on 2016-04-08

306 Comparison of Clustering Methods for High-Dimensional Single-Cell Flow and Mass Cytometry Data

Lukas M. Weber;Mark D. Robinson;

10.1101/047613 — Bioinformatics — Posted on 2016-04-08

307 Accurate measurement of the effects of all amino-acid mutations to influenza hemagglutinin

Michael B Doud;Jesse D Bloom;

10.1101/047571 — Microbiology — Posted on 2016-04-07

308 Magnetite biomineralization in Magnetospirillum magneticum is regulated by a switch-like behavior in the HtrA protease MamE

David M Hershey;Patrick J Browne;Anthony T Iavarone;Joan Teyra;Eun H Lee;Sachdev S Sidhu;Arash Komeili;

10.1101/047555 — Biochemistry — Posted on 2016-04-07

309 Why Mutant Allele Frequencies in Oncogenes Peak Around 0.40 and Rapidly Decrease?

Kasthuri Kannan;Adriana Heguy;

10.1101/047563 — Evolutionary Biology — Posted on 2016-04-13

310 Why Mutant Allele Frequencies in Oncogenes Peak Around 0.40 and Rapidly Decrease?

Kasthuri Kannan;Adriana Heguy;

10.1101/047563 — Evolutionary Biology — Posted on 2016-04-08

311 Why Mutant Allele Frequencies in Oncogenes Peak Around 0.40 and Rapidly Decrease?

Kasthuri Kannan;Adriana Heguy;

10.1101/047563 — Evolutionary Biology — Posted on 2016-04-07

312 DiscoMark: Nuclear marker discovery from orthologous sequences using draft genome data

Sereina Rutschmann;Harald Detering;Sabrina Simon;Jakob Fredslund;Michael T. Monaghan;

10.1101/047282 — Bioinformatics — Posted on 2016-04-07

313 Isolation and Genomic Characterization of Desulfuromonas soudanensis WTL, a Metal- and Electrode-Reducing Bacterium from Anoxic Deep Subsurface Brine

Jonathan P Badalamenti;Zarath M Summers;Chi Ho Chan;Jeffrey A Gralnick;Daniel R Bond;

10.1101/047530 — Microbiology — Posted on 2016-04-06

314 Arkas: Rapid and Reproducible RNAseq Analysis for End Users

Anthony Richard Colombo;Timothy J Triche;Giridharan Ramsingh;

10.1101/031435 — Bioinformatics — Posted on 2016-04-06

315 Genome-wide generalized additive models

Georg Stricker;Alexander Engelhardt;Daniel Schulz;Matthias Schmid;Achim Tresch;Julien Gagneur;

10.1101/047464 — Bioinformatics — Posted on 2016-04-06

316 Interpretability of Multivariate Brain Maps in Brain Decoding: Definition and Quantification

Seyed Mostafa Kia;

10.1101/047522 — Neuroscience — Posted on 2016-04-06

317 PICS: Pathway Informed Classification System for cancer analysis using gene expression data

Michael Young;David Craft;

10.1101/047514 — Genomics — Posted on 2016-04-06

318 Carriers of human mitochondrial DNA macrohaplogroup M colonized India from southeastern Asia

Patricia Marrero;Khaled K Abu-Amero;Jose M Larruga;Vicente M Cabrera;

10.1101/047456 — Genetics — Posted on 2016-04-06

319 Genome-wide evidence for a hybrid origin of modern polar bears

Tianying Lan;Jade Cheng;Aakrosh Ratan;Webb Miller;Stephan Schuster;Sean Farley;Richard Shideler;Thomas Mailund;Charlotte Lindqvist;

10.1101/047498 — Evolutionary Biology — Posted on 2016-04-06

320 Environmental responses, not species interactions, determine species synchrony in natural plant communities

Andrew T. Tredennick;Claire de Mazancourt;Michel Loreau;Peter B. Adler;

10.1101/047480 — Ecology — Posted on 2016-04-06

321 Nanoscale mechanical stimulation method for quantifying C. elegans mechanosensory behavior and memory

Takuma Sugi;Etsuko Okumura;Kaori Kiso;Ryuji Igarashi;

10.1101/047431 — Genetics — Posted on 2016-04-06

322 Morphological diversity of blastula formation and gastrulation in temnopleurid sea urchins

Chisato Kitazawa;Tsubasa Fujii;Yuji Egusa;Mieko Komatsu;Akira Yamanaka;

10.1101/047472 — Developmental Biology — Posted on 2016-04-06

323 Expression of progerin does not result in an increased mutation rate.

Emmanuelle Deniaud;Shelagh Boyle;Wendy Bickmore;

10.1101/047506 — Cell Biology — Posted on 2016-04-06

324 Discrimination between Onchocerca volvulus and O. ochengi filarial larvae in Simulium damnosum (s.l.) and their distribution throughout central Ghana using a versatile high-resolution speciation assay

Stephen R Doyle;Samuel Armoo;Alfons Renz;Mark J Taylor;Mike Osei-Atweneboana;Warwick N Grant;

10.1101/046987 — Scientific Communication and Education — Posted on 2016-04-06

325 Parallel evolution of metazoan mitochondrial proteins

Galya V. Klink;Georgii A. Bazykin;

10.1101/047274 — Genomics — Posted on 2016-04-08

326 Parallel evolution of metazoan mitochondrial proteins

Galya V. Klink;Georgii A. Bazykin;

10.1101/047274 — Genomics — Posted on 2016-04-06

327 An evolutionary medicine perspective on Neandertal extinction

Alexis P Sullivan;Marc de Manuel;Tomas Marques-Bonet;George H Perry;

10.1101/047209 — Evolutionary Biology — Posted on 2016-04-26

328 An evolutionary medicine perspective on Neandertal extinction

Alexis P Sullivan;Marc de Manuel;Tomas Marques-Bonet;George H Perry;

10.1101/047209 — Evolutionary Biology — Posted on 2016-04-06

329 An evolutionary medicine perspective on Neandertal extinction

Alexis P Sullivan;Marc de Manuel;Tomas Marques-Bonet;George H Perry;

10.1101/047209 — Evolutionary Biology — Posted on 2016-04-06

330 Human CODIS STR Loci Profiling from HTS Data

Darrell O. Ricke;Martha Petrovick;Johanna Bobrow;Tara Boettcher;Christina Zook;James Harper;Edward Wack;Eric Schwoebel;

10.1101/047225 — Bioinformatics — Posted on 2016-04-06

331 Integrative pharmacogenomics to infer large-scale drug taxonomy

Nehme El-Hachem;Deena M.A. Gendoo;Laleh Soltan Ghoraie;Zhaleh Safikhani;Petr Smirnov;Ruth Isserlin;Gary D. Bader;Anna Goldenberg;Benjamin Haibe-Kains;

10.1101/046219 — Bioinformatics — Posted on 2016-04-11

332 Integrative pharmacogenomics to infer large-scale drug taxonomy

Nehme El-Hachem;Deena M.A. Gendoo;Laleh Soltan Ghoraie;Zhaleh Safikhani;Petr Smirnov;Ruth Isserlin;Gary D. Bader;Anna Goldenberg;Benjamin Haibe-Kains;

10.1101/046219 — Bioinformatics — Posted on 2016-04-06

333 Language impairment resulting from a de novo deletion of 7q32.1-q33: a case report

Maria Salud Jimenez-Romero;Montserrat Barcos-Martinez;Isabel Espejo-Portero;Antonio Benitez-Burraco;

10.1101/047241 — Neuroscience — Posted on 2016-04-06

334 FlashPCA: fast sparse canonical correlation analysis of genomic data

Gad Abraham;Michael Inouye;

10.1101/047217 — Genomics — Posted on 2016-04-06

335 The promise of disease gene discovery in South Asia

Nathan Joel Nakatsuka;Priya Moorjani;Niraj Rai;Biswanath Sarkar;Arti Tandon;Nick Patterson;Lalji Singh;David Reich;Kumarasamy Thangaraj;

10.1101/047035 — Evolutionary Biology — Posted on 2016-04-06

336 KinLinks: Software Toolkit for Kinship Analysis and Pedigree Generation from HTS Datasets

Anna Shcherbina;Darrell O. Ricke;Eric Schwoebel;Tara Boettcher;Christina Zook;Johanna Bobrow;Martha Petrovick;Edward Wack;

10.1101/046938 — Bioinformatics — Posted on 2016-04-06

337 Selecting Reads for Haplotype Assembly

Sarah O. Fischer;Tobias Marschall;

10.1101/046771 — Bioinformatics — Posted on 2016-04-06

338 Effective Dynamic Models of Metabolic Networks

Michael Vilkhovoy;Mason Minot;Jeffrey Varner;

10.1101/047316 — Systems Biology — Posted on 2016-04-05

339 Araport11: a complete reannotation of the Arabidopsis thaliana reference genome

CHIA-YI Cheng;Vivek Krishnakumar;Agnes Chan;Seth Schobel;Christopher D. Town;

10.1101/047308 — Plant Biology — Posted on 2016-04-05

340 Order under uncertainty: robust differential expression analysis using probabilistic models for pseudotime inference

Kieran Campbell;Christopher Yau;

10.1101/047365 — Bioinformatics — Posted on 2016-04-05

341 Growth-Environment Dependent Modulation of Staphylococcus aureus Branched-Chain to Straight-Chain Fatty Acid Ratio and Incorporation of Unsaturated Fatty Acids

Suranjana Sen;Seth R Johnson;Yang Song;Sirisha Sirobhushanam;Ryan Tefft;Craig Gatto;Brian J Wilkinson;

10.1101/047324 — Microbiology — Posted on 2016-04-05

342 Characterization of sterol synthesis in bacteria

Jeremy H Wei;Xinchi Yin;Paula Welander;

10.1101/047233 — Microbiology — Posted on 2016-04-05

343 Redox potential as a master variable controlling pathways of metal reduction by Geobacter sulfurreducens

Caleb E Levar;Colleen L Hoffman;Aubrey J Dunshee;Brandy M Toner;Daniel R Bond;

10.1101/043059 — Microbiology — Posted on 2016-04-05

344 Genetic contributions to self-reported tiredness

Vincent Deary;Saskia P Hagenaars;Sarah E Harris;W David Hill;Gail Davies;David CM Liewald;International Consortium for Blood Pressure GWAS;CHARGE consortium Aging and Longevity Group;Andrew M McIntosh;Catharine R Gale;Ian J Deary;

10.1101/047290 — Genetics — Posted on 2016-04-05

345 Nucleosome dynamics and maintenance of epigenetic states of CpG islands

Ian B Dodd;Kim Sneppen;

10.1101/047332 — Cell Biology — Posted on 2016-04-05

346 Timing appearance and integration of actin-organizing palladin protein in dynamic myofibril assembly

Ngoc-Uyen-Nhi Nguyen;Tz-Yu Liu;Hao-Ven Wang;

10.1101/047183 — Cell Biology — Posted on 2016-04-05

347 AptaTRACE: Elucidating Sequence-Structure Binding Motifs by Uncovering Selection Trends in HT-SELEX Experiments

Dao Phuong;Jan Hoinka;Yijie Wang;Mayumi Takahashi;Jiehua Zhou;Fabrizio Costa;John Rossi;John Burnett;Rolf Backofen;Teresa M. Przytycka;

10.1101/047357 — Bioinformatics — Posted on 2016-04-05

348 Predictions shape confidence in right inferior frontal gyrus

Maxine T Sherman;Anil K Seth;Ryota Kanai;

10.1101/047126 — Neuroscience — Posted on 2016-04-06

349 Predictions shape confidence in right inferior frontal gyrus

Maxine T Sherman;Anil K Seth;Ryota Kanai;

10.1101/047126 — Neuroscience — Posted on 2016-04-05

350 CoSMoMVPA: multi-modal multivariate pattern analysis of neuroimaging data in Matlab / GNU Octave

Nikolaas N Oosterhof;Andrew C Connolly;James V Haxby;

10.1101/047118 — Neuroscience — Posted on 2016-04-06

351 CoSMoMVPA: multi-modal multivariate pattern analysis of neuroimaging data in Matlab / GNU Octave

Nikolaas N Oosterhof;Andrew C Connolly;James V Haxby;

10.1101/047118 — Neuroscience — Posted on 2016-04-05

352 Functional metagenomics reveals novel β-galactosidases not predictable from gene sequences

Jiujun Cheng;Tatyana Romantsov;Katja Engel;Andrew C Doxey;David R. Rose;Josh D. Neufeld;Trevor Charles;

10.1101/047167 — Microbiology — Posted on 2016-04-05

353 Wide genome involvement in response to long-term selection for antibody response in an experimental population of White Leghorn chickens

Mette Lillie;Zheya Sheng;Christa Honaker;Ben Dorshorst;Paul Siegel;Örjan Carlborg;

10.1101/046953 — Genomics — Posted on 2016-04-05

354 Zfp423 regulates Sonic hedgehog signaling via primary cilium function

CHEN-JEI HONG;Bruce A. Hamilton;

10.1101/046961 — Genetics — Posted on 2016-04-05

355 Mixed Model Association with Family-Biased Case-Control Ascertainment

tristan hayeck;Noah A. Zaitlen;Po-Ru Loh;Samuela Pollack;Alexander Gusev;Nick Patterson;Alkes Price;

10.1101/046995 — Genetics — Posted on 2016-04-05

356 Effects of linked selective sweeps on demographic inference and model selection

Daniel R Schrider;Alexander G Shanku;Andrew D Kern;

10.1101/047019 — Evolutionary Biology — Posted on 2016-04-05

357 Potential for Zika virus to establish a sylvatic transmission cycle in the Americas

Benjamin Althouse;Nikos Vasilakis;Amadou Sall;Mawlouth Diallo;Scott Weaver;Kathryn Hanley;

10.1101/047175 — Ecology — Posted on 2016-04-05

358 Bias in community-weighted mean analysis relating species attributes to sample attributes: justification and remedy

David Zeleny;

10.1101/046946 — Ecology — Posted on 2016-04-05

359 SATORI: A System for Ontology-Guided Visual Exploration of Biomedical Data Repositories

Fritz Lekschas;Nils Gehlenborg;

10.1101/046755 — Bioinformatics — Posted on 2016-04-05

360 qpMerge: Merging different peptide isoforms using a motif centric strategy

Matthew M Hindle;Thierry Le Bihan;Johanna Krahmer;Sarah F Martin;Zeenat B Noordally;T. Ian Simpson;Andrew J. Millar;

10.1101/047100 — Bioinformatics — Posted on 2016-04-05

361 The healthy ageing gene expression signature for Alzheimer’s disease diagnosis: a random sampling perspective

Laurent Jacob;Terence P Speed;

10.1101/047050 — Bioinformatics — Posted on 2016-04-05

362 Petri Net-Based Graphical and Computational Modelling of Biological Systems

Alessandra Livigni;Laura O'Hara;Marta E Polak;Tim Angus;Lee B Smith;Tom C Freeman;

10.1101/047043 — Systems Biology — Posted on 2016-04-04

363 Synthetic miR-16-5p does not act as a reverse transcriptase co-factor to enhance detection of small RNA

Melissa A McAlexander;Kenneth W Witwer;

10.1101/047001 — Molecular Biology — Posted on 2016-04-04

364 Detecting DNA Methylation using the Oxford Nanopore Technologies MinION sequencer

Jared T Simpson;Rachael Workman;Philip C Zuzarte;Matei David;Lewis Jonathan Dursi;Winston Timp;

10.1101/047142 — Genomics — Posted on 2016-04-04

365 Cytosine Variant Calling with High-throughput Nanopore Sequencing

Arthur C Rand;Miten Jain;Jordan Eizenga;Audrey Musselman-Brown;Hugh E Olsen;Mark Akeson;Benedict Paten;

10.1101/047134 — Genomics — Posted on 2016-04-04

366 moGSA: integrative single sample gene-set analysis of multiple omics data

Chen Meng;Bernhard Kuster;Bjoern Peters;Aedin C Culhane;Amin Moghaddas Gholami;

10.1101/046904 — Bioinformatics — Posted on 2016-04-03

367 Statistical Analysis of Zika Virus Correlation to Microcephaly

Pedro Simoni Pasquini;Isabela Cristina Simoni;

10.1101/046896 — Pathology — Posted on 2016-04-03

368 Quantifying lymphocyte receptor diversity

Thierry Mora;Aleksandra M Walczak;

10.1101/046870 — Immunology — Posted on 2016-04-03

369 Gender identification in Chicken (Gallus gallus) by PCR using whole blood and dried blood spot on filter paper as template: without prior DNA isolation

S Dhanasekaran;G Dhinakar Raj;AR Vignesh;ST Selvan;B Prakash;P Perumal;Seenichamy Arivudainambi;Thambidurai Ganesh Babu;

10.1101/046888 — Genomics — Posted on 2016-04-03

370 A Genealogical Look at Shared Ancestry on the X Chromosome

Vince Buffalo;Stephen M. Mount;Graham Coop;

10.1101/046912 — Genetics — Posted on 2016-04-03

371 Potential pitfalls in estimating viral load heritability

Gabriel E Leventhal;Sebastian Bonhoeffer;

10.1101/046797 — Evolutionary Biology — Posted on 2016-04-14

372 Potential pitfalls in estimating viral load heritability

Gabriel E Leventhal;Sebastian Bonhoeffer;

10.1101/046797 — Evolutionary Biology — Posted on 2016-04-03

373 Is voice a marker for autism spectrum disorder? A systematic review and meta-analysis

Riccardo Fusaroli;Anna Lambrechts;Dan Bang;Dermot M Bowler;Sebastian B Gaigg;

10.1101/046565 — Bioinformatics — Posted on 2016-04-03

374 Privacy-Preserving Read Mapping Using Locality Sensitive Hashing and Secure Kmer Voting

Victoria Popic;Serafim Batzoglou;

10.1101/046920 — Bioinformatics — Posted on 2016-04-03

375 The CARD-CC/Bcl10/paracaspase signaling complex is functionally conserved since the last common ancestor of planulozoa.

Jens Staal;Yasmine Driege;Alice Borghi;Paco Hulpiau;Laurens Lievens;Ismail Gul;Srividhya Sundararaman;Amanda Goncalves;Ineke Dhondt;Bart Braeckman;Ulrich Technau;Yvan Saeys;Frans Van Roy;Rudi Beyaert;

10.1101/046789 — Evolutionary Biology — Posted on 2016-04-19

376 The CARD-CC/Bcl10/paracaspase signaling complex is functionally conserved since the last common ancestor of planulozoa.

10.1101/046789 — Evolutionary Biology — Posted on 2016-04-15

377 The CARD-CC/Bcl10/paracaspase signaling complex is functionally conserved since the last common ancestor of planulozoa.

10.1101/046789 — Evolutionary Biology — Posted on 2016-04-13

378 The CARD-CC/Bcl10/paracaspase signaling complex is functionally conserved since the last common ancestor of planulozoa.

10.1101/046789 — Evolutionary Biology — Posted on 2016-04-03

379 The CARD-CC/Bcl10/paracaspase signaling complex is functionally conserved since the last common ancestor of planulozoa.

10.1101/046789 — Evolutionary Biology — Posted on 2016-04-02

380 Modification of plant regeneration medium decreases the time for recovery of Solanum lycopersicum cultivar M82 stable transgenic lines

Sarika Gupta;Joyce Van Eck;

10.1101/046839 — Plant Biology — Posted on 2016-04-02

381 A new computational model captures fundamental architectural features of diverse biological networks

Bader Al-Anzi;Noah Olsman;Christopher Ormerod;Sherif Gerges;Georgios Piliouras;John Ormerod;Kai Zinn;

10.1101/046813 — Systems Biology — Posted on 2016-04-02

382 Low parental melatonin levels increases autism spectrum disorder risk in children

Wiebe Braam;Friederike Ehrhart;Chris T Evelo;Anneke PHM Maas;Marcel G Smits;Leopold Curfs;

10.1101/046722 — Neuroscience — Posted on 2016-04-02

383 Spontaneous Blink Rate Correlates With Financial Risk Taking

Emily Sherman;Robert C Wilson;

10.1101/046821 — Neuroscience — Posted on 2016-04-02

384 Wolbachia confers sex-specific resistance and tolerance to enteric but not systemic bacterial infection in Drosophila

Radhakrishnan B Vasanthakrishnan;Gupta Vanika;Jonathon A Siva-Jothy;Katy M Monteith;Sam P Brown;Pedro F Vale;

10.1101/045757 — Microbiology — Posted on 2016-04-04

385 Wolbachia confers sex-specific resistance and tolerance to enteric but not systemic bacterial infection in Drosophila

Radhakrishnan B Vasanthakrishnan;Gupta Vanika;Jonathon A Siva-Jothy;Katy M Monteith;Sam P Brown;Pedro F Vale;

10.1101/045757 — Microbiology — Posted on 2016-04-02

386 Peculiar hybrid genomes of devastating plant pests promote plasticity in the absence of sex and meiosis

Romain Blanc-Mathieu;Laetitia Perfus-Babeoch;Jean-Marc Aury;Martine Da Rocha;Jerome Gouzy;Erika Sallet;Cristina Martin-Jimenez;Philippe Castagnone-Sereno;Jean-Francois Flot;Djampa Kozlowski;Julie Cazareth;Arnaud Couloux;Corinne Da Silva;Julie Guy;Corinne Rancurel;Thomas Schiex;Pierre Abad;Patrick Wincker;Etienne Danchin;

10.1101/046805 — Evolutionary Biology — Posted on 2016-04-02

387 The evolution of mutual mate choice under direct benefits

Alexandre Courtiol;Loïc Etienne;Romain Féron;Bernard Godelle;François Rousset;

10.1101/046714 — Evolutionary Biology — Posted on 2016-04-02

388 Probabilistic estimation of short sequence expression using RNA-Seq data and the positional bootstrap

Hui Yuan Xiong;Leo J. Lee;Hannes Bretschneider;Jiexin Gao;Nebojsa Jojic;Brendan J. Frey;

10.1101/046474 — Molecular Biology — Posted on 2016-04-02

389 Lethal Gene Drive Selects Inbreeding

James J. Bull;

10.1101/046847 — Evolutionary Biology — Posted on 2016-04-02

390 Allosteric inhibition of Aurora-A kinase by a synthetic VNAR nanobody

Selena G Burgess;Arkadiusz Oleksy;Tommaso Cavazza;Mark W Richards;Isabelle Vernos;David Matthews;Richard Bayliss;

10.1101/046730 — Biochemistry — Posted on 2016-04-02

391 Inferring heterozygosity from ancient and low coverage genomes

Athanasios Kousathanas;Christoph Leuenberger;Vivian Link;Christian Sell;Joachim Burger;Daniel Wegmann;

10.1101/046748 — Genomics — Posted on 2016-04-01

392 Inferring local movement of pathogen vectors among hosts

Zhen Fu;Brendan Epstein;Joanna L Kelley;Qi Zheng;Alan O Bergland;Carmen I Castillo Carrillo;Andrew S Jensen;William E Snyder;

10.1101/046540 — Ecology — Posted on 2016-04-06

393 The Impact of African and Brazilian Zika virus isolates on neuroprogenitors

Loraine Campanati;Luiza M. Higa;Rodrigo Delvecchio;Paula Pezzuto;Ana Luiza Valadão;Fábio L. Monteiro;Grasiella M. Ventura;Carla Veríssimo;Renato S. Aguiar;Ana Maria B. De Filippis;Amilcar Tanuri;

10.1101/046599 — Microbiology — Posted on 2016-04-20

394 Evolutionary stability of microbial communities with antibiotic degrading species

Eric D Kelsic;Kalin Vetsigian;Roy Kishony;

10.1101/045732 — Evolutionary Biology — Posted on 2016-04-22

395 Population imaging at subcellular resolution supports specific and local inhibition by granule cells in the olfactory bulb

Martin Wienisch;Venkatesh N Murthy;

10.1101/046144 — Neuroscience — Posted on 2016-04-04

396 The dynamic landscape of fission yeast meiosis alternative-splice isoforms

Zheng Kuang;Jef D. Boeke;Stefan Canzar;

10.1101/045922 — Genomics — Posted on 2016-04-06

397 The dynamic landscape of fission yeast meiosis alternative-splice isoforms

Zheng Kuang;Jef D. Boeke;Stefan Canzar;

10.1101/045922 — Genomics — Posted on 2016-04-05

398 Glycerol as the actuator of integral feedback control in yeast osmotic stress signaling

Suzannah Rutherford;

10.1101/045682 — Systems Biology — Posted on 2016-04-26

399 Decision Making by Drosophila Flies

Julius Adler;Lar L Vang;

10.1101/045666 — Genetics — Posted on 2016-04-13

400 Decision Making by Drosophila Flies

Julius Adler;Lar L Vang;

10.1101/045666 — Genetics — Posted on 2016-04-08

401 A Multidisciplinary Approach to Explain Biological Aging and Longevity

Brett N Augsburger;

10.1101/045633 — Evolutionary Biology — Posted on 2016-04-25

402 Relative contributions of conformational selection and induced fit

Denis Michel;

10.1101/045591 — Biochemistry — Posted on 2016-04-05

403 The power and pitfalls of Dirichlet-multinomial mixture models for ecological count data

John D. O'Brien;Nicholas Record;Peter Countway;

10.1101/045468 — Ecology — Posted on 2016-04-20

404 Towards standard practices for sharing computer code and programs in neuroscience

Stephen Eglen;Ben Marwick;Yaroslav Halchenko;Michael Hanke;Shoaib Sufi;Padraig Gleeson;R. Angus Silver;Andrew Davison;Linda Lanyon;Mathew Abrams;Thomas Wachtler;David J Willshaw;Christophe Pouzat;Jean-Baptiste Poline;

10.1101/045104 — Neuroscience — Posted on 2016-04-04

405 The genetic basis of host choice and resting behavior in the major African malaria vector, Anopheles arabiensis

Bradley J Main;Yoosook Lee;Heather Ferguson;Anicet Kihonda;Nicodem Govella;Katharina S Kreppel;Travis C Collier;Anthony J Cornel;Eleazar Eskin;Eun Yong Kang;Catelyn C Nieman;Allison M Weakley;Gregory Lanzaro;

10.1101/044701 — Genetics — Posted on 2016-04-05

406 Drosophila Mutants that Are Motile but Respond Poorly to All Stimuli Tested: Mutants that have a large defect in interaction with stimuli or in executive function

Lar L Vang;Julius Adler;

10.1101/045062 — Genetics — Posted on 2016-04-13

407 Drosophila Mutants that Are Motile but Respond Poorly to All Stimuli Tested: Mutants that have a large defect in interaction with stimuli or in executive function

Lar L Vang;Julius Adler;

10.1101/045062 — Genetics — Posted on 2016-04-07

408 Synaptic Transmission Parallels Neuromodulation in a Central Food-Intake Circuit

Philipp Schlegel;Michael J Texada;Anton Miroschnikow;Andreas Schoofs;Sebastian Hückesfeld;Marc Peters;Casey M Schneider-Mizell;Haluk Lacin;Feng Li;Richard D Fetter;James W Truman;Albert Cardona;Michael J Pankratz;

10.1101/044990 — Neuroscience — Posted on 2016-04-08

409 A catalogue of Bilaterian-specific genes - their function and expression profiles in early development

Andrea Kraemer-Eis;Luca Ferretti;Philipp Schiffer;Peter Heger;Thomas Wiehe;

10.1101/041806 — Evolutionary Biology — Posted on 2016-04-17

410 Connecting the sequence-space of bacterial signaling proteins to phenotypes using coevolutionary landscapes

Ryan R. Cheng;Olle Nordesjö;Ryan L. Hayes;Herbert Levine;Samuel C. Flores;José N. Onuchic;Faruck Morcos;

10.1101/044586 — Biophysics — Posted on 2016-04-17

411 AVOCADO: Visualization of Workflow-Derived Data Provenance for Reproducible Biomedical Research

Holger Stitz;Stefan Luger;Marc Streit;Nils Gehlenborg;

10.1101/044164 — Bioinformatics — Posted on 2016-04-01

412 Membrane insertion of- and membrane potential sensing by semiconductor voltage nanosensors: feasibility demonstration

Kyoungwon Park;Yung Kuo;Volodymyr Shvadchak;Antonino Ingargiola;Xinghong Dai;Lawrence Hsiung;Wookyeom Kim;Hong Zhou;Peng Zou;Alex Levine;Jack Li;Shimon Weiss;

10.1101/044057 — Bioengineering — Posted on 2016-04-16

413 LoLoPicker: Detecting Low Allelic-Fraction Variants in Low-Quality Cancer Samples from Whole-exome Sequencing Data

Jian Carrot-Zhang;Jacek Majewski;

10.1101/043612 — Bioinformatics — Posted on 2016-04-24

414 Prediction of kinase-specific phosphorylation sites through an integrative model of protein context and sequence

Ralph Patrick;Coralie Horin;Bostjan Kobe;Kim-Anh Lê Cao;Mikael Bodèn;

10.1101/043679 — Bioinformatics — Posted on 2016-04-21

415 The evolutionary fates of a large segmental duplication in mouse

Andrew Parker Morgan;James Matthew Holt;Rachel Clara McMullan;Timothy A Bell;Amelia Mary-Frances Clayshulte;John Paul Didion;Liran Yadgary;David Thybert;Duncan T Odom;Paul Flicek;Leonard McMillan;Fernando Pardo-Manuel de Villena;

10.1101/043687 — Genetics — Posted on 2016-04-29

416 Beyond clines: lineages and haplotype blocks in hybrid zones

Alisa Sedghifar;Yaniv Brandvain;Peter Ralph;

10.1101/043190 — Genetics — Posted on 2016-04-27

417 Comparative analysis of dengue and Zika outbreaks reveals differences by setting and virus

Sebastian Funk;Adam J. Kucharski;Anton Camacho;Rosalind M. Eggo;Laith Yakob;Lawrence M. Murray;W. John Edmunds;

10.1101/043265 — Ecology — Posted on 2016-04-26

418 Choice-induced biases in perception

Long Luu;Alan A Stocker;

10.1101/043224 — Neuroscience — Posted on 2016-04-01

419 Diurnal variation of circulating interleukin-6 in humans: a meta-analysis

Gustav Nilsonne;Mats Lekander;Torbjörn Åkerstedt;John Axelsson;Michael Ingre;

10.1101/042507 — Immunology — Posted on 2016-04-14

420 Phylogeny-aware Identification and Correction of Taxonomically Mislabeled Sequences

Alexey M Kozlov;Jiajie Zhang;Pelin Yilmaz;Frank Oliver Glockner;Alexandros Stamatakis;

10.1101/042200 — Bioinformatics — Posted on 2016-04-26

421 Twenty five new viruses associated with the Drosophilidae (Diptera)

Claire L Webster;Ben Longdon;Samuel H Lewis;Darren J Obbard;

10.1101/041665 — Microbiology — Posted on 2016-04-24

422 Copy number variants in the sheep genome detected using multiple approaches

Gemma M Jenkins;Michael E Goddard;Mik Black;Rudiger Brauning;Benoit Auvray;Ken G Dodds;James Kijas;Noelle Cockett;John C McEwan;

10.1101/041475 — Genomics — Posted on 2016-04-26

423 The role of isoforms in the evolution of cryptic coloration in Peromyscus mice

Ricardo Mallarino;Tess A Linden;Catherine R Linnen;Hopi E Hoekstra;

10.1101/041087 — Evolutionary Biology — Posted on 2016-04-13

424 A new advanced backcross tomato population enables high resolution leaf QTL mapping and gene identification

Daniel Fulop;Aashish Ranjan;Itai Ofner;Michael F. Covington;Daniel H. Chitwood;Donnelly West;Yasunori Ichihashi;Lauren Headland;Daniel Zamir;Julin N. Maloof;Neelima R. Sinha;

10.1101/040923 — Plant Biology — Posted on 2016-04-22

425 AC-PCA: simultaneous dimension reduction and adjustment for confounding variation

Zhixiang Lin;Can Yang;Ying Zhu;John C. Duchi;Yao Fu;Yong Wang;Bai Jiang;Mahdi Zamanighomi;Xuming Xu;Mingfeng Li;Nenad Sestan;Hongyu Zhao;Wing Hung Wong;

10.1101/040485 — Bioinformatics — Posted on 2016-04-19

426 CRISPR-directed mitotic recombination enables genetic mapping without crosses

Meru J Sadhu;Joshua S Bloom;Laura Day;Leonid Kruglyak;

10.1101/040428 — Genetics — Posted on 2016-04-27

427 Distinct stages in the recognition, sorting and packaging of proTGFα into COPII coated transport vesicles

Pengcheng Zhang;Randy Schekman;

10.1101/040410 — Cell Biology — Posted on 2016-04-15

428 Tunable bet hedging in yeast responses to osmotic stress

Yoshikazu Hirate;Samuel Bottani;Wyming Lee Pang;Suzannah Rutherford;

10.1101/039982 — Evolutionary Biology — Posted on 2016-04-05

429 A practical guide for improving transparency and reproducibility in neuroimaging research

Krzysztof J. Gorgolewski;Russell Poldrack;

10.1101/039354 — Neuroscience — Posted on 2016-04-12

430 FRETBursts: An Open Source Toolkit for Analysis of Freely-Diffusing Single-Molecule FRET

Antonino Ingargiola;Eitan Lerner;SangYoon Chung;Shimon Weiss;Xavier Michalet;

10.1101/039198 — Biophysics — Posted on 2016-04-11

431 AAV-mediated CRISPR/Cas gene editing of retinal cells in vivo.

Sandy SC Hung;Vicki Chrysostomou;Amy Fan Li;Jeremiah KH Lim;Jiang-Hui Wang;Joseph E Powell;Leilei Tu;Maciej Daniszewski;Camden Lo;Raymond C Wong;Jonathan G Crowston;Alice Pebay;Anna E King;Bang V Bui;Guei-Sheung Liu;Alex Hewitt;

10.1101/039156 — Genomics — Posted on 2016-04-24

432 Implementation of an Open Source Software solution for Laboratory Information Management and automated RNAseq data analysis in a large-scale Cancer Genomics initiative using BASE with extension package Reggie.

Jari Hakkinen;Nicklas Nordborg;Olle Mansson;Johan Vallon-Christersson;

10.1101/038976 — Bioinformatics — Posted on 2016-04-12

433 Convert Your Favorite Protein Modeling Program Into A Mutation Predictor: "MODICT"

Ibrahim Tanyalcin;Katrien Stouffs;Dorien Daneels;Carla Al Assaf;Willy Lissens;Anna Jansen;Alexander Gheldof;

10.1101/038992 — Bioinformatics — Posted on 2016-04-15

434 The stasis that wasn’t: Adaptive body mass evolution is opposite to phenotypic selection in a wild rodent population

Timothée Bonnet;Peter Wandeler;Glauco Camenisch;Erik Postma;

10.1101/038604 — Evolutionary Biology — Posted on 2016-04-15

435 Short template switch events explain mutation clusters in the human genome

Ari Löytynoja;Nick Goldman;

10.1101/038380 — Genomics — Posted on 2016-04-15

436 msVolcano: a flexible web application for visualizing quantitative proteomics data.

Sukhdeep Singh;Marco Hein;Francis Stewart;

10.1101/038356 — Bioinformatics — Posted on 2016-04-01

437 Expression of segment polarity genes in brachiopods supports a non-segmental ancestral role of engrailed for bilaterians

Bruno Cossermelli Vellutini;Andreas Hejnol;

10.1101/029892 — Evolutionary Biology — Posted on 2016-04-30

438 Identification of positive selection in genes is greatly improved by using experimentally informed site-specific models

Jesse D Bloom;

10.1101/037689 — Evolutionary Biology — Posted on 2016-04-30

439 The basis of sharp spike onset in standard biophysical models

Maria Teleńczuk;Bertrand Fontaine;Romain Brette;

10.1101/037549 — Neuroscience — Posted on 2016-04-14

440 Revisiting the assessment of inter-individual differences in fMRI activations-behavior relationships.

Mael Lebreton;Stefano Palminteri;

10.1101/036772 — Neuroscience — Posted on 2016-04-11

441 Population-Scale Sequencing Data Enables Precise Estimates of Y-STR Mutation Rates

Thomas Willems;Melissa Gymrek;G. David Poznik;Chris Tyler-Smith;The 1000 Genomes Project Chromosome Y Group;Yaniv Erlich;

10.1101/036590 — Genomics — Posted on 2016-04-09

442 Population-Scale Sequencing Data Enables Precise Estimates of Y-STR Mutation Rates

Thomas Willems;Melissa Gymrek;G. David Poznik;Chris Tyler-Smith;The 1000 Genomes Project Chromosome Y Group;Yaniv Erlich;

10.1101/036590 — Genomics — Posted on 2016-04-07

443 Evolution of corticosteroid specificity for human, chicken, alligator and frog glucocorticoid receptors

Yoshinao Katsu;Satomi Kohno;Kaori Oka;Michael E Baker;

10.1101/036665 — Evolutionary Biology — Posted on 2016-04-21

444 SC3 - consensus clustering of single-cell RNA-Seq data

Vladimir Yu. Kiselev;Kristina Kirschner;Michael T. Schaub;Tallulah Andrews;Andrew Yiu;Tamir Chandra;Kedar N Natarajan;Wolf Reik;Mauricio Barahona;Anthony R Green;Martin Hemberg;

10.1101/036558 — Bioinformatics — Posted on 2016-04-14

445 Long single-molecule reads can resolve the complexity of the Influenza virus composed of rare, closely related mutant variants

Alexander Artyomenko;Nicholas C Wu;Serghei Mangul;Eleazar Eskin;Ren Sun;Alex Zelikovsky;

10.1101/036392 — Bioinformatics — Posted on 2016-04-28

446 A reference panel of 64,976 haplotypes for genotype imputation

Shane McCarthy;Sayantan Das;Warren Kretzschmar;Richard Durbin;Goncalo Abecasis;Jonathan Marchini;

10.1101/035170 — Genetics — Posted on 2016-04-05

447 Estimation of the lag time in a subsequent monomer addition model for fibril elongation

Suzanne K. Shoffner;Santiago Schnell;

10.1101/034900 — Biochemistry — Posted on 2016-04-22

448 A Model of Avian Genome Evolution

Liaofu Luo;

10.1101/034710 — Evolutionary Biology — Posted on 2016-04-30

449 COGNITIVE ENDOPHENOTYPES OF MODERN AND EXTINCT HOMININS ASSOCIATED WITH NTNG GENE PARALOGS

Pavel Prosselkov;Ryota Hashimoto;Denis Polygalov;Ohi Kazutaka;Qi Zhang;Thomas J. McHugh;Masatoshi Takeda;Shigeyoshi Itohara;

10.1101/034413 — Genomics — Posted on 2016-04-04

450 COGNITIVE DOMAINS FUNCTION COMPLEMENTATION BY NTNG GENE PARALOGS

Pavel Prosselkov;Denis Polygalov;Qi Zhang;Thomas J. McHugh;Shigeyoshi Itohara;

10.1101/034645 — Genomics — Posted on 2016-04-04

451 Unsupervised data-driven stratification of mentalizing heterogeneity in autism

Michael V. Lombardo;Meng-Chuan Lai;Bonnie Auyeung;Rosemary J. Holt;Carrie Allison;Paula Smith;Bhismadev Chakrabarti;Amber N. V. Ruigrok;John Suckling;Edward T. Bullmore;MRC AIMS Consortium;Christine Ecker;Michael C. Craig;Declan G. M. Murphy;Francesca Happe;Simon Baron-Cohen;

10.1101/034454 — Animal Behavior and Cognition — Posted on 2016-04-29

452 Novel protective associations with age-related macular degeneration: A common variant near CTRB1 and a rare variant in PELI3

Erin K Wagner;Yi Yu;Eric H Souied;Sanna Seitsonen;Ilkka J Immonen;Paavo Häppölä;Soumya Raychaudhuri;Mark J Daly;Johanna M. Seddon;

10.1101/034173 — Genetics — Posted on 2016-04-09

453 Evolutionary dynamics of cytoplasmic segregation and fusion: Mitochondrial mixing facilitated the evolution of sex at the origin of eukaryotes

Arunas L Radzvilavicius;

10.1101/034116 — Evolutionary Biology — Posted on 2016-04-07

454 Meiotic interactors of a mitotic gene TAO3 revealed by functional analysis of its rare variant

Saumya Gupta;Aparna Radhakrishnan;Rachana Nitin;Pandu Raharja-Liu;Gen Lin;Lars M Steinmetz;Julien Gagneur;Himanshu Sinha;

10.1101/033167 — Genetics — Posted on 2016-04-03

455 Urbanization shapes the demographic history of a native rodent (the white-footed mouse, Peromyscus leucopus) in New York City

Stephen E. Harris;Alexander T. Xue;Diego Alvarado-Serrano;Joel T. Boehm;Tyler Joseph;Michael J. Hickerson;Jason Munshi-South;

10.1101/032979 — Evolutionary Biology — Posted on 2016-04-05

456 A comparison of one-rate and two-rate inference frameworks for site-specific dN/dS estimation

Stephanie Spielman;Suyang Wan;Claus O Wilke;

10.1101/032805 — Evolutionary Biology — Posted on 2016-04-22

457 Genome-wide analysis of microRNA signature in lung adenocarcinoma with EGFR exon 19 deletion

Lixia Ju;Mingquan Han;Chao Zhao;Xuefei Li;

10.1101/032367 — Cancer Biology — Posted on 2016-04-04

458 Cortical state and natural movie responses in cat visual cortex

Martin A Spacek;Nicholas V Swindale;

10.1101/031765 — Neuroscience — Posted on 2016-04-28

459 Extending the Stress-Gradient hypothesis: greater adaptation between teosinte and soil biota at higher stress sites

Anna M O'Brien;Ruairidh J.H. Sawers;Jeffrey Ross-Ibarra;Sharon Y Strauss;

10.1101/031195 — Ecology — Posted on 2016-04-20

460 Identification and analysis of integrons and cassette arrays in bacterial genomes

Jean Cury;Thomas Jové;Marie Touchon;Bertrand Néron;Eduardo P. C. Rocha;

10.1101/030866 — Bioinformatics — Posted on 2016-04-26

461 Fitness costs of herbicide resistance across natural populations of the common morning glory, Ipomoea purpurea

Megan van Etten;Adam Kuester;Shu-Mei Chang;Regina Baucom;

10.1101/030833 — Evolutionary Biology — Posted on 2016-04-21

462 Genome-wide association studies suggest limited immune gene enrichment in schizophrenia compared to five autoimmune diseases

Jennie G Pouget;Vanessa F Goncalves;Schizophrenia Working Group of the PGC;Sarah L Spain;Hilary K Finucane;Soumya Raychaudhuri;James L Kennedy;Jo Knight;

10.1101/030411 — Genetics — Posted on 2016-04-12

463 Recycler: an algorithm for detecting plasmids from de novo assembly graphs

Roye Rozov;Aya Brown Kav;David Bogumil;Naama Shterzer;Eran Halperin;Itzhak Mizrahi;Ron Shamir;

10.1101/029926 — Genomics — Posted on 2016-04-05

464 Mash: fast genome and metagenome distance estimation using MinHash

Brian D. Ondov;Todd J. Treangen;Páll Melsted;Adam B. Mallonee;Nicholas H. Bergman;Sergey Koren;Adam M. Phillippy;

10.1101/029827 — Bioinformatics — Posted on 2016-04-19

465 Molecular genetic contributions to self-rated health

Sarah E Harris;Saskia P Hagenaars;Gail Davies;William David Hill;David CM Liewald;Stuart J Ritchie;Riccardo E Marioni;METASTROKE consortium;International Consortium for Blood Pressure;CHARGE consortium Aging and Longevity Group;CHARGE consortium Cognitive Group;Cathie LM Sudlow;Joanna M Wardlaw;Andrew M McIntosh;Catharine R Gale;Ian J Deary;

10.1101/029504 — Genetics — Posted on 2016-04-12

466 Exploiting aberrant mRNA expression in autism for gene discovery and diagnosis

Jinting Guan;Ence Yang;Jizhou Yang;Gang Wang;Yong Zeng;Guoli Ji;James J Cai;

10.1101/029488 — Genetics — Posted on 2016-04-21

467 CHiCAGO: Robust Detection of DNA Looping Interactions in Capture Hi-C data

Jonathan Cairns;Paula Freire-Pritchett;Steven W. Wingett;Csilla Várnai;Andrew Dimond;Vincent Plagnol;Daniel Zerbino;Stefan Schoenfelder;Biola-Maria Javierre;Cameron Osborne;Peter Fraser;Mikhail Spivakov;

10.1101/028068 — Genomics — Posted on 2016-04-01

468 ATRX binds to atypical chromatin domains at the 3′ exons of ZNF genes to preserve H3K9me3 enrichment

David Valle-Garcia;Zulekha A. Qadeer;Domhnall S. McHugh;Flavia G. Ghiraldini;Asif H. Chowdhury;Dan Hasson;Michael A. Dyer;Felix Recillas-Targa;Emily Bernstein;

10.1101/027789 — Genomics — Posted on 2016-04-05

469 Evolutionary assembly patterns of prokaryotic genomes

Maximilian Press;Christine Queitsch;Elhanan Borenstein;

10.1101/027649 — Evolutionary Biology — Posted on 2016-04-11

470 Widespread shortening of 3’ untranslated regions and increased exon inclusion are evolutionarily conserved features of innate immune responses to infection

Athma A Pai;Golshid Baharian;Ariane Page Sabourin;Jessica F Brinkworth;Yohann Nedelec;Joseph W Foley;Jean-Christophe Grenier;Katherine J Siddle;Anne Dumaine;Vania Yotova;Zachary P Johnson;Robert E Lanford;Christopher B Burge;Luis B Barreiro;