bioRxiv directory

Romer, A. L.; Elliott, M. L.; Knodt, A. R.; Sison, M. L.; Ireland, D.; Houts, R.; Ramrakha, S.; Poulton, R.; Keenan, R.; Melzer, T. R.; Moffitt, T. E.; Caspi, A.; Hariri, A. R.

10.1101/788232 — neuroscience — Posted on 2019-09-30

10 STAG2 cohesin is essential for heart morphogenesis

De Koninck, M.; Lapi, E.; Badia-Careaga, C.; Cossio, I.; Gimenez-Llorente, D.; Rodriguez-Corsino, M.; Andrada, E.; Hidalgo, A.; Manzanares, M.; Real, F. X.; Losada, A.

10.1101/788158 — developmental biology — Posted on 2019-09-30

11 iScore: an MPI supported software for ranking protein-protein docking models based on a random walk graph kernel and support vector machines.

Renaud, N.; Jung, Y.; Honavar, V.; Geng, C.; Bonvin, A.; Xue, L.

10.1101/788166 — bioinformatics — Posted on 2019-09-30

McNabb, C. B.; Burgess, L. G.; Fancourt, A.; Mulligan, N.; FitzGibbon, L.; Riddell, P.; Murayama, K.

10.1101/788208 — animal behavior and cognition — Posted on 2019-09-30

13 Thermal sensitivity of lizard embryos indicates a mismatch between oxygen supply and demand at near-lethal temperatures

Hall, J. M.; Warner, D. A.

10.1101/788687 — ecology — Posted on 2019-09-30

14 Temporal and spatial limitations in global surveillance for bat filoviruses and henipaviruses

Becker, D. J.; Crowley, D. E.; Washburne, A. D.; Plowright, R. K.

10.1101/674655 — epidemiology — Posted on 2019-09-30

15 Predicting Adverse Drug-Drug Interactions with Neural Embedding of Semantic Predications

Burkhardt, H. A.; Subramanian, D.; Mower, J.; Cohen, T.

10.1101/752022 — bioinformatics — Posted on 2019-09-30

16 Flexible binding of m6A reader protein YTHDC1 to its preferred RNA motif

Li, Y.; Bedi, R. K.; Wiedmer, L.; Huang, D.; Sledz, P.; Caflisch, A.

10.1101/787937 — biophysics — Posted on 2019-09-30

17 Genetic transformation and live-cell nuclear and actin dynamics during the life cycle of a chytrid

Medina, E. M.; Robinson, K. A.; Bellingham-Johnstun, K.; Ianiri, G.; Laplante, C.; Fritz-Laylin, L. K.; Buchler, N. E.

10.1101/787945 — cell biology — Posted on 2019-09-30

18 Faster diffusive dynamics of histone-like nucleoid structuring proteins in live bacteria caused by silver ions

Sadoon, A. A.; Khadka, P.; Freeland, J.; Gundampati, R. K.; Manso, R.; Ruiz, M.; Krishnamurthi, V. R.; Thallapuranam, S. K.; Chen, J.; Wang, Y.

10.1101/776229 — biophysics — Posted on 2019-09-30

19 Mechanisms of activation and desensitization of full-length glycine receptor in membranes

kumar, A.; Basak, S.; Rao, S.; Gicheru, Y.; Mayer, M. L.; Sansom, M.; Chakrapani, S.

10.1101/788695 — biophysics — Posted on 2019-09-30

20 Myeloid-secreted BDNF maintains innervation of inguinal adipose in male mice

Blaszkiewicz, M.; Wood, E.; Koizar, S.; Willows, J. W.; Cao, L.; Huang, W.; Godwin, J.; Townsend, K.

10.1101/787234 — neuroscience — Posted on 2019-09-30

21 Electroacupuncture at Governor Vessel improves neurobehavioral function via reduction of complexin1

Xu, Y.; Liu, J.; Zhao, X.; Zhou, L.; Xiong, L.; Li, C.; Jiang, Y.; Wang, Y.; Wang, T.-h.

10.1101/787838 — neuroscience — Posted on 2019-09-30

22 SPARC: a method to genetically manipulate precise proportions of cells.

Isaacman-Beck, J.; Paik, K. C.; Wienecke, C. F. R.; Yang, H. H.; Fisher, Y. E.; Wang, I. E.; Ishida, I. G.; Maimon, G.; Wilson, R. I.; Clandinin, T. R.

10.1101/788679 — neuroscience — Posted on 2019-09-30

23 ATF4 regulates neuronal death in models of Parkinson’s Disease

Demmings, M. D.; Petroff, G. N.; Tarnowski-Garner, H. E.; Cregan, S. P.

10.1101/783795 — neuroscience — Posted on 2019-09-30

24 Transcriptomic changes due to early, chronic ethanol exposure during cortical development implicates arealization, cell-type specification, Axon Guidance and Synaptogenesis as primary determinants of Fetal Alcohol Spectrum Disorders

Fischer, M.; Chander, P.; Kang, H.; Weick, J. P.

10.1101/784793 — neuroscience — Posted on 2019-09-30

25 Linking Engineered Cells to Their Digital Twins: a Version Control System for Strain Engineering

Tellechea-Luzardo, J.; Winterhalter, C.; Widera, P.; Kozyra, J.; de Lorenzo, V.; Krasnogor, N.

10.1101/786111 — synthetic biology — Posted on 2019-09-30

26 Co-catabolism of arginine and succinate drives symbiotic nitrogen fixation

Flores-Tinoco, C. E.; Christen, M.; Christen, B.

10.1101/741314 — plant biology — Posted on 2019-09-30

27 Mutational load and the functional fraction of the human genome

Galeota-Sprung, B.; Sniegowski, P. D.; Ewens, W.

10.1101/785865 — evolutionary biology — Posted on 2019-09-30

28 Deviations from Hardy Weinberg Equilibrium at CCR5-Δ32 in Large Sequencing Data Sets?

Wei, X.; Nielsen, R.

10.1101/768390 — evolutionary biology — Posted on 2019-09-30

29 Hexokinase 2 is dispensable for photoreceptor development but is required for survival during aging and outer retinal stress

Weh, E.; Lutrzykowska, Z.; Smith, A.; Hager, H.; Pawar, M.; Wubben, T.; Besirli, C.

10.1101/782607 — neuroscience — Posted on 2019-09-30

30 Aquila_stLFR: assembly based variant calling package for stLFR and hybrid assembly for linked-reads

Zhou, X.; Zhang, L.; Fang, X.; Liu, Y.; Dill, D. L.; Sidow, A.

10.1101/742239 — bioinformatics — Posted on 2019-09-30

31 Analysis of the Human Connectome Data Supports the Notion of a \"Common Model of Cognition\" for Human and Human-Like Intelligence

Stocco, A.; Steine-Hanson, Z.; Koh, N.; Laird, J.; Lebiere, C.; Rosenbloom, P.

10.1101/703777 — neuroscience — Posted on 2019-09-30

32 Dendritic GABAB receptors control nonlinear information transfer along the dendro-somatic axis in layer 5 pyramidal neurons

Schulz, J. M.; Larkum, M. E.

10.1101/762625 — neuroscience — Posted on 2019-09-30

33 Unfolding and identification of membrane proteins from native cell membranes

Galvanetto, N.; Maity, S.; Ilieva, N.; Ye, Z.; Laio, A.; Torre, V.

10.1101/732933 — biophysics — Posted on 2019-09-30

34 Thermal stimulation temperature is encoded as a firing rate in a Hydra nerve ring

Tzouanas, C. N.; Kim, S.; Badhiwala, K. N.; Avants, B. W.; Robinson, J.

10.1101/787648 — neuroscience — Posted on 2019-09-30

35 Dynamic evolution of de novo DNA methyltransferases in rodent and primate genomes

Molaro, A.; Malik, H. S.; Bourc'his, D.

10.1101/786863 — evolutionary biology — Posted on 2019-09-30

36 Rethinking the fundamental unit of ecological remote sensing: Estimating individual level plant traits at scale

Marconi, S.; Graves, S.; Weinstein, B.; Bohlman, S.; White, E.

10.1101/556472 — ecology — Posted on 2019-09-30

37 Hyperactivity-impulsivity in ADHD is associated with white matter microstructure in the cingulum’s angular bundle

Damatac, C. G.; Zwiers, M.; Chauvin, R. J. M.; van Rooij, D.; Akkermans, S. E. A.; Naaijen, J.; Hoekstra, P. J.; Hartman, C. A.; Oosterlaan, J.; Franke, B.; Buitelaar, J. K.; Beckmann, C. F.; Sprooten, E.

10.1101/787713 — neuroscience — Posted on 2019-09-30

38 Structural disconnections contribute to lesion-induced brain functional connectivity disruptions via direct and indirect mechanisms

Griffis, J. C.; Metcalf, N. V.; Corbetta, M.; Shulman, G. L.

10.1101/785576 — neuroscience — Posted on 2019-09-30

39 Sex and pubertal status influence dendritic spine density onto frontal cortiocostriatal projection neurons

Delevich, K.; Okada, N. J.; Rahane, A.; Zhang, Z.; Hall, C. D.; Wilbrecht, L.

10.1101/787408 — neuroscience — Posted on 2019-09-30

40 Insect herbivory reshapes a native leaf microbiome

Humphrey, P. T.; Whiteman, N. K.

10.1101/620716 — ecology — Posted on 2019-09-30

41 Pseudomonas mRNA 2.0: Boosting Gene Expression Through Enhanced mRNA Stability and Translational Efficiency

Neves, D.; Vos, S.; Blank, L. M.; Ebert, B. E.

10.1101/787127 — synthetic biology — Posted on 2019-09-30

42 Th2 cytokine profile in appendicular lavage fluid is compatible with allergy as an etiology for acute appendicitis

Carvalho, N.; Barros, A.; Coelho, H. O.; Moita, C. F.; Neves-Costa, A.; Borges, F. C.; Moita, L. F.; Costa, P.

10.1101/569947 — pathology — Posted on 2019-09-30

43 Multimodal Neuroimaging-based Prediction of Adult Outcomes in Childhood-onset ADHD using Ensemble Learning Techniques

Luo, Y.; Alvarez, T. L.; Halperin, J. M.; Li, X.

10.1101/785766 — neuroscience — Posted on 2019-09-30

44 Contribution of structural connectivity to MEG functional connectivity

Wodeyar, A.; Srinivasan, R.

10.1101/785600 — neuroscience — Posted on 2019-09-30

45 MeCP2 deletion impaired layer 2/3-dominant dynamic reorganization of cortical circuit during motor skill learning

Yue, Y.; Xu, P.; Liu, Z.; Chen, Z.; Su, J.; Chen, A.; Ash, R.; Barut, E.; Simha, R.; Smirnakis, S. M.; Zeng, C.; Lu, H.

10.1101/786822 — neuroscience — Posted on 2019-09-30

46 A window into lysogeny: Revealing temperate phage biology with transcriptomics

Owen, S. V.; Canals, R.; Wenner, N.; Hammarlöf, D. L.; Kröger, C.; Hinton, J. C. D.

10.1101/787010 — microbiology — Posted on 2019-09-30

47 IMAGE:High-powered detection of genetic effects on DNA methylation using integrated methylation QTL mapping and allele-specific analysis

Fan, Y.; Vilgalys, T. P.; Sun, S.; Peng, Q.; Tung, J.; Zhou, X.

10.1101/615039 — genomics — Posted on 2019-09-30

48 Human neutrophil response to Pseudomonas bacteriophages

Roach, D. R.; Chollet-Martin, S.; Noel, B.; Granger, V.; Debarbieux, L.; de Chaisemartin, L.

10.1101/786905 — immunology — Posted on 2019-09-30

49 Natural representation of composite data with replicated autoencoders

Negri, M.; Bergamini, D.; Baldassi, C.; Zecchina, R.; Feinauer, C.

10.1101/787309 — bioinformatics — Posted on 2019-09-30

50 Migration of intestinal dendritic cell subsets upon intrinsic and extrinsic TLR3 stimulation

Garcias Lopez, A.; Bekiaris, V.; Müller Luda, K.; Hütter, J.; Getachew Muleta, K.; Nakawesi, J.; Ulmert, I.; Kotarsky, K.; Malissen, B.; O'Keeffe, M.; Holzmann, B.; Agace, W. W.; Lahl, K.

10.1101/785675 — immunology — Posted on 2019-09-30

51 Electron Microscopic Identification of Distant Metastatic Cell in Human Prostate Cancer in Tissue section

Sinha, A. A.

10.1101/787853 — cancer biology — Posted on 2019-09-30

52 Prediction pipeline for discovery of regulatory motifs associated with Brugia malayi molting

Grote, A.; Li, Y.; Liu, C.; Voronin, D.; Geber, A.; Lustigman, S.; Unnasch, T.; Welch, L.; Ghedin, E.

10.1101/781930 — bioinformatics — Posted on 2019-09-30

53 Functional Maturation of Human iPSC-based Cardiac Microphysiological Systems with Tunable Electroconductive Decellularized Extracellular Matrices

Tsui, J. H.; Leonard, A.; Camp, N. D.; Long, J. T.; Nawas, Z. Y.; Chavanachat, R.; Choi, J. S.; Wolf-Yadlin, A.; Murry, C. E.; Sniadecki, N. J.; Kim, D.-H.

10.1101/786657 — bioengineering — Posted on 2019-09-30

54 Antigenicity and Potential Use of A Novel Brucella Multiepitope Recombinant Protein in the Diagnosis of Brucellosis

Yin, D.; Bai, Q.; Li, L.; Xu, L.; Xu, K.; Li, J.

10.1101/786343 — zoology — Posted on 2019-09-30

55 Cover crops improve early season natural enemy recruitment and pest management in cotton production

Bowers, C.; Toews, M.; Liu, Y.; Schmidt, J.

10.1101/786509 — ecology — Posted on 2019-09-30

56 Revisiting biogeography of livestock animal domestication

Zliobaite, I.

10.1101/786442 — ecology — Posted on 2019-09-30

57 Heat shock response pathways regulate stimulus-specificity and sensitivity of NF-κB signalling to temperature stress

Paszek, A.; Kardynska, M.; Bagnall, J.; Smieja, J.; Spiller, D. G.; Widlak, P.; Kimmel, M.; Widlak, W.; Paszek, P.

10.1101/782516 — cell biology — Posted on 2019-09-30

58 PINOT: An Intuitive Resource for Integrating Protein-Protein Interactions

Tomkins, J. E.; Ferrari, R.; Vavouraki, N.; Hardy, J.; Lovering, R. C.; Lewis, P. A.; McGuffin, L. J.; Manzoni, C.

10.1101/788000 — bioinformatics — Posted on 2019-09-30

59 HIGD2A is required for assembly of the COX3 module of human mitochondrial complex IV

Hock, D. H.; Reljic, B.; Ang, C.-S.; Mountford, H. S.; Compton, A. G.; Ryan, M. T.; Thorburn, D. R.; Stroud, D. A.

10.1101/787721 — biochemistry — Posted on 2019-09-30

60 Season-specific carry-over of early-life associations in a monogamous bird species

Kurvers, R. H. J. M.; Prox, L.; Farine, D.; Jongeling, C.; Snijders, L.

10.1101/785345 — animal behavior and cognition — Posted on 2019-09-30

61 Assessing the specificity of the relationship between brain alpha oscillations and tonic pain

Valentini, E.; Halder, S.; McInnersey, D.; Cooke, J.; Romei, V.

10.1101/787283 — neuroscience — Posted on 2019-09-30

62 A new formalism for perceptual classification with normative inference of internal criteria

Lee, H.; Lee, H.-J.; Choe, K. W.; Lee, S.-H.

10.1101/787424 — neuroscience — Posted on 2019-09-30

63 Detection of AmpC β-lactamases in Escherichia coli using different screening agars

den Drijver, E.; Verweij, J. J.; Verhulst, C.; Soer, J.; Veldman, K.; Rossen, J. W.; Kooista-Smit, M. A. M. D.; Kluytmans - van den Bergh, M. F. Q.; Kluytmans, J. A. J. W.

10.1101/787085 — microbiology — Posted on 2019-09-30

64 Benchmarking metagenomic marine microbial growth prediction from codon usage bias and peak-to-trough ratios

Long, A. M.; Hou, S.; Ignacio-Espinoza, J. C.; Fuhrman, J.

10.1101/786939 — microbiology — Posted on 2019-09-30

65 ISX-9 manipulates endocrine progenitor fate revealing conserved intestinal lineages in mouse and human.

Tsakmaki, A.; Fonseca Pedro, P.; Pavlidis, P.; Hayee, B. H.; Bewick, G. A.

10.1101/787788 — cell biology — Posted on 2019-09-30

66 Integrin α6β4 signaling switches DNA repair from homologous recombination to non-homologous end-joining pathway to sensitize breast cancer cells to cisplatin

Chen, M.; Marrs, B.; Qi, L.; Knifley, T.; Jarrett, S.; Weiss, H. L.; Stewart, R. L.; D'Orazio, J. A.; O'Connor, K. L.

10.1101/785873 — cancer biology — Posted on 2019-09-30

67 TSUNAMI: Translational Bioinformatics Tool Suite For Network Analysis And Mining

Huang, Z.; Han, Z.; Wang, T.; Shao, W.; Xiang, S.; Salama, P.; Rizkalla, M.; Huang, K.; Zhang, J.

10.1101/787507 — bioinformatics — Posted on 2019-09-30

68 RNA-Seq analysis reveals pluripotency-associated genes and their interaction networks in human embryonic stem cells

Ghosh, A.; Som, A.

10.1101/782169 — bioinformatics — Posted on 2019-09-30

69 Electrospun cellulose acetate/gelatin nanofibrous wound dressing containing berberine for diabetic foot ulcer healing: in vitro and in vivo studies

Samadian, H.; Ehterami, A.; Farzamfar, S.; Vaez, A.; Khastar, H.; Alam, M.; Ai, A.; Allahyari, Z.; Salehi, M.

10.1101/787093 — bioengineering — Posted on 2019-09-30

70 Maximizing Dissimilarity in Resting State detects Heterogeneous Subtypes in Healthy population associated with High Substance-Use and Problems in Antisocial Personality

Kashyap, R.; Bhattacharjee, S.; Yeo, B. T.; Chen, S. A.

10.1101/787606 — neuroscience — Posted on 2019-09-30

71 Putting the brain in a box: a toolbox for creating Cartesian Geometric Representations with Isometric Dimensions (Cgrids)

Raemaekers, M.; Bruurmijn, M.; Ramsey, N. F.

10.1101/786368 — neuroscience — Posted on 2019-09-30

72 Overnight caloric restriction prior to cardiac arrest and resuscitation leads to improved survival and neurological outcome in a rodent model

Azadian, M.; Tian, G.; Maki, N.; Bazrafkan, A.; Rafi, M.; Desai, M.; Otarola, I.; Zaher, S.; Khan, A.; Suri, Y.; Wang, M.; Steward, O.; Akbari, Y.

10.1101/786871 — neuroscience — Posted on 2019-09-30

73 Spatiotemporal patterns of neocortical activity around hippocampal sharp-wave ripples

Karimi Abadchi, J.; Nazari-Ahangarkolaee, M.; Gattas, S.; Bermudez-Contreras, E.; McNaughton, B. L.; Mohajerani, M. H.

10.1101/787218 — neuroscience — Posted on 2019-09-30

74 EphB6 regulates social behavior through gut microbiota-mediated vitamin B6 metabolism and excitation/inhibition balance of medial prefrontal cortex in mice

Li, Y.; Luo, Z.-Y.; Hu, Y.-Y.; Bi, Y.-W.; Yang, J.-M.; Liu, M.-A.; Zou, W.-J.; Li, S.; Shen, T.; Li, S.-J.; Huang, L.; Zhou, A.-J.; Song, Y.-L.; Gao, T.-M.; Li, J.-M.

10.1101/787622 — neuroscience — Posted on 2019-09-30

75 Examining multiple cellular pathways at once using multiplex hextuple luciferase assaying

Sarrion-Perdigones, A.; Chang, L.; Gonzalez, Y.; Gallego-Flores, T.; Young, D.; Venken, K.

10.1101/786046 — molecular biology — Posted on 2019-09-30

76 A secreted LysM effector protects fungal hyphae through chitin-dependent homodimer polymerization

Sanchez-Vallet, A.; Tian, H.; Rodriguez-Moreno, L.; Valkenburg, D.-J.; Saleem-Batcha, R.; Wawra, S.; Kombrink, A.; Verhage, L.; de Jonge, R.; van Esse, P.; Zuccaro, A.; Croll, D.; Mesters, J.; Thomma, B.

10.1101/787820 — microbiology — Posted on 2019-09-30

77 Differential contribution of Anopheles coustani and Anopheles arabiensis to the transmission of Plasmodium falciparum and Plasmodium vivax in two neighboring villages of Madagascar

Goupeyou-Youmsi, J. M.; Rakotondranaivo, T.; Puchot, N.; Peterson, I.; GIROD, R.; Vigan-Womas, I.; Ndiath, M. O.; Bourgouin, C.

10.1101/787432 — microbiology — Posted on 2019-09-30

78 Complete chloroplast genomes of 14 mangroves: phylogenetic and genomic comparative analyses

Shi, C.; Han, K.; Li, L.; Seim, I.; Lee, S. M.-Y.; Xu, X.; Yang, H.; Fan, G.; Liu, X.

10.1101/787556 — genomics — Posted on 2019-09-30

79 Natural selection shapes variation in genome-wide recombination rate in Drosophila pseudoobscura

Samuk, K.; Manzano-Winkler, B.; Ritz, K. R.; Noor, M. A. F.

10.1101/787382 — genetics — Posted on 2019-09-30

80 Genetic Variation At 27 Y-STRs In Four Regions Of Bahrain

Al-Snan, N. R.; Messaoudi, S. A.; Khubrani, Y. M.; Wetton, J. H.; Jobling, M. A.; Bakhiet, M.

10.1101/787341 — genetics — Posted on 2019-09-30

81 Genetic meta-analysis of obsessive-compulsive disorder and self-report compulsive symptoms.

Smit, D. J.; Cath, D. C.; Zilhao, N.; Ip, H. F.; Denys, D.; den Braber, A.; de Geus, E. J.; Verweij, K. J.; Hottenga, J.-J.; Boomsma, D. I.

10.1101/785311 — genetics — Posted on 2019-09-30

82 Dynamic evolution of de novo DNA methyltransferases in rodent and primate genomes

Molaro, A.; Malik, H. S.; Bourch'is, D.

10.1101/786863 — evolutionary biology — Posted on 2019-09-30

83 Convergent evolution of sex-specific leg ornaments in Drosophilidae - from cells to structures

Tanaka, K.; Barmina, O.; Massey, J. H.; Kopp, A.

10.1101/786764 — evolutionary biology — Posted on 2019-09-30

84 Apical restriction of the planar cell polarity component VANGL in pancreatic ducts is required to maintain epithelial integrity

Flasse, L.; Yennek, S.; Cortijo, C.; Seijo Barandiaran, I.; Kraus, M. R.-C.; Grapin-Botton, A.

10.1101/778332 — developmental biology — Posted on 2019-09-30

85 Gels for Live Analysis of Compartmentalized Environments (GLAnCE): A Tissue Model to Probe Tumour Phenotypes at Tumour-Stroma Interfaces

D'Arcangelo, E.; Wu, N. C.; Chen, T.; Shahaj, A.; Cadavid, J. L.; Huang, L.; Ailles, L.; McGuigan, A. P.

10.1101/782086 — bioengineering — Posted on 2019-09-30

86 Formation of S. pombe Erh1 homodimer mediates gametogenic gene silencing and meiosis progression

HAZRA, D.; ANDRIC, V.; PALANCADE, B.; ROUGEMAILLE, M.; GRAILLE, M.

10.1101/787739 — biochemistry — Posted on 2019-09-30

87 Stochastic delays suppress noise in a genetic circuit with negative feedback

Smith, M.; Singh, A.

10.1101/786491 — systems biology — Posted on 2019-09-30

88 Developmental onset of enduring long-term potentiation in mouse hippocampus

Ostrovskaya, O. I.; Cao, G.; Eroglu, C.; Harris, K. M.

10.1101/787192 — neuroscience — Posted on 2019-09-30

89 Stable encoding of visual cues in the mouse retrosplenial cortex

Powell, A.; Connelly, W. M.; Vasalauskaite, A.; Nelson, A.; Aggleton, J.; Vann, S.; Sengpiel, F.; Ranson, A.

10.1101/785139 — neuroscience — Posted on 2019-09-30

90 A pentylenetetrazole-induced kindling zebrafish larval model for evoked recurrent seizures

Sun, S.; Zhu, C.; Ma, M.; Ni, B.; Chen, L.; Zhu, H.; Zuxiang, L.

10.1101/787580 — neuroscience — Posted on 2019-09-30

91 The majority of histone acetylation is a consequence of transcription

Martin, B. J.; Brind'Amour, J.; Jensen, K. N.; Kuzmin, A.; Liu, Z. C.; Lorincz, M.; Howe, L. J.

10.1101/785998 — molecular biology — Posted on 2019-09-30

92 A decade of epigenetic change in aging twins: genetic and environmental contributions to longitudinal DNA methylation

Reynolds, C. A.; Tan, Q.; Munoz, E.; Jylhava, J.; Hjelmborg, J.; Christiansen, L.; Hagg, S.; Pedersen, N. L.

10.1101/778555 — genetics — Posted on 2019-09-30

93 Genetic colocalization atlas points to common regulatory sites and genes for hematopoietic traits and hematopoietic contributions to disease phenotypes

Thom, C. S.; Voight, B. F.

10.1101/787333 — genetics — Posted on 2019-09-30

94 The role of genomic vs. epigenomic variation in shaping patterns of convergent transcriptomic variation across continents in a young species complex

Rougeux, C.; Laporte, M.; Gagnaire, P.-A.; Bernatchez, L.

10.1101/784231 — evolutionary biology — Posted on 2019-09-30

95 CD146+CD107a+ Mesenchymal Stem/Stromal Cells with Signature Attributes Correlate to Therapeutic Potency as \"First Responders\" to Injury and Inflammation

Bowles, A.; Kouroupis, D.; Willman, M.; Orfei, C. P.; Agarwal, A.; Correa, D.

10.1101/787176 — cell biology — Posted on 2019-09-30

96 Three-dimensional Genome Structure Reveals Distinct Chromatin Signatures of Mouse Female Germline Stem Cells During Development

Tian, G.; Zhao, X.; Xie, W.; Li, X.; Hou, C.; Wang, Y.; Wang, L.; Zhao, X.; Li, H.; Li, J.; Wu, J.

10.1101/787689 — cell biology — Posted on 2019-09-30

97 Chemerin increases T-cell mediated cytotoxicity of human tumors via modulation of a novel CMKLR1/PTEN/PD-L1 axis

Rennier, K.; Krug, E.; Virdi, G.; Shin, W. J.; Pachynski, R.

10.1101/787697 — cancer biology — Posted on 2019-09-30

98 Symbolic Information Flow Measurement (SIFM): A Software for Measurement of Information Flow Using Symbolic Analysis

Nebiu, D.; Kamberaj, H.

10.1101/785782 — bioinformatics — Posted on 2019-09-30

99 Allosteric regulation of Glutamate dehydrogenase deamination activity

Bera, S.; Rashid, M.; Sun, G.-Q.; Medvinsky, A. B.; Li, B.-L.; Acquisti, C.; Sljoka, A.; Chakraborty, A.

10.1101/786954 — systems biology — Posted on 2019-09-30

100 Computational redesign of PETase for plastic biodegradation by GRAPE strategy

Cui, Y.; Chen, Y.; Liu, X.; Dong, S.; Tian, Y.; Qiao, Y.; Han, J.; Li, C.; Han, X.; Liu, W.; Chen, Q.; Du, W.; Tang, S.; Xiang, H.; Liu, H.; Wu, B.

10.1101/787069 — synthetic biology — Posted on 2019-09-30

101 Reptile-like physiology in Early Jurassic stem-mammals

Newham, E.; Gill, P. G.; Brewer, P.; Benton, M. J.; Fernandez, V.; Gostling, N. J.; Haberthür, D.; Kankaanpaa, T.; Kallonen, A.; Navarro, C.; Pacureanu, A.; Zeller-Plumhoff, B.; Richards, K.; Robson-Brown, K.; Schneider, P.; Suhonen, H.; Tafforeau, P.; Williams, K.; Corfe, I. J.

10.1101/785360 — paleontology — Posted on 2019-09-30

102 High-speed quantitative optical imaging of absolute metabolism in the rat cortex

Wilson, R. H.; Crouzet, C.; Torabzadeh, M.; Bazrafkan, A.; Maki, N.; Tromberg, B. J.; Akbari, Y.; Choi, B.

10.1101/786244 — neuroscience — Posted on 2019-09-30

103 The sensory representation of causally controlled objects

Clancy, K. B.; Mrsic-Flogel, T.

10.1101/786467 — neuroscience — Posted on 2019-09-30

104 PI 3-kinase delta enhances axonal PIP3 to support axon regeneration in the adult CNS

Barber, A. C.; Evans, R. S.; Nieuwenhuis, B.; Pearson, C. S.; Fuchs, J.; MacQueen, A. R.; Erp, S. v.; Haenzi, B.; Hulshof, L. A.; Osborne, A.; Conceicao, R.; Deshpande, S. S.; Cave, J.; ffrench-Constant, C.; Smith, P. D.; Okkenhaug, K.; Eickholt, B. J.; Martin, K. R.; Fawcett, J. W.; Eva, R.

10.1101/787994 — neuroscience — Posted on 2019-09-30

105 Listeria phages induce Cas9 degradation to protect lysogenic genomes

Osuna, B. A.; Karambelkar, S.; Mahendra, C.; Christie, K. A.; Garcia, B.; Davidson, A. R.; Kleinstiver, B. P.; Kilcher, S.; Bondy-Denomy, J.

10.1101/787200 — microbiology — Posted on 2019-09-30

106 pH-Dependent Grafting of Cancer Cells with Antigenic Epitopes Promotes Selective Antibody-Mediated Cytotoxicity

Wehr, J.; Sikorski, E. L.; Bloch, E.; Feigman, M. S.; Ferraro, N. J.; Baybutt, T.; Snook, A. E.; Pires, M. M.; Thevenin, D.

10.1101/785402 — immunology — Posted on 2019-09-30

107 Tissue-autonomous immune response regulates stress signalling during hypertrophy

Krautz, R.; Khalili, D.; Theopold, U.

10.1101/787226 — immunology — Posted on 2019-09-30

108 Bacterial flagellar motor PL-ring disassembly sub-complexes are widespread and ancient

Kaplan, M.; Sweredoski, M. J.; Rodrigues, J.; Tocheva, E. I.; Chang, Y.-W.; Ortega, D. R.; Beeby, M.; Jensen, G. J.

10.1101/786715 — evolutionary biology — Posted on 2019-09-30

109 Model-based Assessments of Differential Introgression and Linked Natural Selection During Divergence and Speciation

Sethuraman, A.; Sousa, V.; Hey, J.

10.1101/786038 — evolutionary biology — Posted on 2019-09-30

110 Cardiac function modulates endocardial cell dynamics to shape the cardiac outflow tract

Sidhwani, P.; Boezio, G. L. M.; Yang, H.; Chi, N. C.; Roman, B. L.; Stainier, D. Y. R.; Yelon, D.

10.1101/787358 — developmental biology — Posted on 2019-09-30

111 PulseDIA: in-depth data independent acquisition mass spectrometry using enhanced gas phase fractionation

Cai, X.; Ge, W.; Yi, X.; Sun, R.; Zhu, J.; Lu, C.; Sun, P.; Zhu, T.; Ruan, G.; Yuan, C.; Liang, S.; Lv, M.; Huang, S.; Zhu, Y. J.; Guo, T.

10.1101/787705 — cancer biology — Posted on 2019-09-30

112 A Genotype Likelihood Framework for GWAS with Low Depth Sequencing Data from Admixed Individuals

Jorsboe, E.; Albrechtsen, A.

10.1101/786384 — bioinformatics — Posted on 2019-09-30

113 HaploHide: A Data Hiding Framework for Privacy Enhanced Sharing of Personal Genetic Data

Harmanci, A. O.; Jiang, X.; Zhi, D.

10.1101/786517 — bioinformatics — Posted on 2019-09-30

114 Angular momentum regulation may dictate the slip severity in young adults

Nazifi, M. M.; Beschorner, K.; Hur, P.

10.1101/785808 — bioengineering — Posted on 2019-09-30

115 eIF5a reduction via decreased Klf5 leads to cell senescence by mitochondrial fission in VSMCs

Ma, D.; Zheng, B.; Liu, H.-l.; Zhao, Y.-b.; Liu, X.; Zhang, X.; Li, Q.; Shi, W.-b.; Suzuki, T.; Wen, J.-k.

10.1101/787812 — biochemistry — Posted on 2019-09-30

116 Effects of DCM leaf Extract of Gnidia glauca (Fresen) on Locomotor Activity, Anxiety and Exploration-Like Behaviors in High Fat Diet-Induced Obese Rats

Arika, W. M.; Kibiti, C. M.; Njagi, J. M.; Ngugi, M. P.

10.1101/786103 — animal behavior and cognition — Posted on 2019-09-30

117 Population Dynamics and Biological Feasibility of Sustainable Harvesting as a Conservation Strategy for Tropical and Temperate Freshwater Turtles

Rachmansah, A.; Norris, D.; Gibbs, J. P.

10.1101/786806 — zoology — Posted on 2019-09-30

118 The First Publicly Available Annotated Genome for Cannabis plants

Orsburn, B.; Jenkins, C.

10.1101/786186 — plant biology — Posted on 2019-09-30

119 Dynamic perineuronal net expression during learned maternal behavior is cortical hemisphere-specific and dependent on methyl-CpG-binding protein 2

Lau, B. Y. B.; Layo, D. E.; Emery, B.; Everett, M.; Kumar, A.; Stevenson, P.; Reynolds, K. G.; Cherosky, A.; Bowyer, S.-A. H.; Roth, S.; Fisher, D.; McCord, R. P.; Krishnan, K.

10.1101/787267 — neuroscience — Posted on 2019-09-30

120 Genome sequence and characterisation of coliphage vB_Eco_SLUR29

Besler, I.; Sazinas, P.; Harrison, C.; Gannon, L.; Redgwell, T.; Michniewski, S.; Hooton, S.; Hobman, J.; Millard, A. D.

10.1101/787416 — microbiology — Posted on 2019-09-30

121 Donor monocyte-derived macrophages promote human acute graft versus host disease

Jardine, L.; Cytlak, U.; Gunawan, M.; Reynolds, G.; Green, K.; Wang, X.-N.; Pagan, S.; Pradnya, M.; Lamb, C. A.; Long, A. K.; Hurst, E.; Nair, S.; Jackson, G.; Publicover, A.; Bigley, V.; Haniffa, M.; Simpson, A. J.; Collin, M.

10.1101/787036 — immunology — Posted on 2019-09-30

122 Mutual Information Reveals a 6 Base Pair Signal in Noncoding DNA

Dannemiller, J. L.

10.1101/786814 — genetics — Posted on 2019-09-30

123 Genetic factors influencing a neurobiological substrate for psychiatric disorders

Andlauer, T. F. M.; Mühleisen, T. W.; Hoffstaedter, F.; Teumer, A.; Wittfeld, K.; Teuber, A.; Reinbold, C. S.; Bülow, R.; Caspers, S.; Herms, S.; Hoffmann, P.; Minnerup, H.; Moebus, S.; Teismann, H.; Völker, U.; International FTD-Genomics Consortium (IFGC), ; The 23andMe Research Team, ; Etkin, A.; Berger, K.; Grabe, H. J.; Nöthen, M. M.; Amunts, K.; Eickhoff, S. B.; Sämann, P. G.; Müller-Myhsok, B.; Cichon, S.

10.1101/774463 — genetics — Posted on 2019-09-30

124 Deep residual neural networks resolve quartet molecular phylogenies

Zou, Z.; Zhang, H.; Guan, Y.; Zhang, J. G.

10.1101/787168 — evolutionary biology — Posted on 2019-09-30

125 Concordant developmental expression profiles of orthologues in highly divergent Bilateria

Ferretti, L.; Kraemer-Eis, A.; Schiffer, P. H.

10.1101/786723 — evolutionary biology — Posted on 2019-09-30

126 Mutational load and the functional fraction of the human genome

Galeota-Sprung, B.; Sniegowski, P. D.; Ewens, W.

10.1101/785865 — evolutionary biology — Posted on 2019-09-30

127 The transfer of a mitochondrial selfish element to the nuclear genome and its consequences

Dutheil, J. Y.; Münch, K.; Schotanus, K.; Stukenbrock, E. H.; Kahmann, R.

10.1101/787044 — evolutionary biology — Posted on 2019-09-30

128 Size reductions and genomic changes associated with harvesting within two generations in wild walleye populations

Bowles, E.; Marin, K.; Mogensen, S.; Macleod, P.; Fraser, D. J.

10.1101/787374 — ecology — Posted on 2019-09-30

129 Regulation of Bud Emergence by a MAPK Pathway

Prabhakar, A.; Chow, J.; Siegel, A.; Cullen, P. J.

10.1101/786426 — cell biology — Posted on 2019-09-30

130 ITC and SPR Analysis Using Dynamic Approach

Krishnamoorthy, J.; Krishanmoorthy, G. K. P.; Alluvada, P.; Hameed MS, S.; Pandian, R.; Kwa, T.

10.1101/788075 — biophysics — Posted on 2019-09-30

131 SAINT: Self-Attention AugmentedInception-Inside-Inception Network Improves ProteinSecondary Structure Prediction

Uddin, M. R.; Mahbub, S.; Rahman, M. S.; Bayzid, M. S.

10.1101/786921 — bioinformatics — Posted on 2019-09-30

132 Enriching human interactome with functional mutations to detect high-impact network modules underlying complex diseases

Cui, H.; Srinivasan, S.; Korkin, D.

10.1101/786798 — bioinformatics — Posted on 2019-09-30

133 Detection and characterization of copy number variants based on whole-genome sequencing by MGI platforms

Rao, J.; Peng, L.; Chen, F.; Jiang, H.; Geng, C.; Xia, Z.; Liu, X.; Liang, X.; Mu, F.

10.1101/786962 — bioinformatics — Posted on 2019-09-30

134 Oxidation shuts down an auto-inhibitory mechanism of von Willebrand factor

Tsai, R.; Interlandi, G.

10.1101/786889 — bioengineering — Posted on 2019-09-30

135 Computationally guided high-throughput design of self-assembling drug nanoparticles

Reker, D.; Rybakova, Y.; Kirtane, A. R.; Cao, R.; Yang, J. W.; Navamajiti, N.; Gardner, A.; Zhang, R. M.; Esfandiary, T.; L'Heureux, J.; von Erlach, T.; Smekalova, E. M.; Leboeuf, D.; Hess, K.; Lopes, A.; Rogner, J.; Collins, J.; Tamang, S. M.; Ishida, K.; Chamberlain, P.; Yun, D.; Lytoon-Jean, A.; Soule, C. K.; Cheah, J. H.; Hayward, A. M.; Langer, R.; Traverso, G.

10.1101/786251 — bioengineering — Posted on 2019-09-30

136 Population differences in how wild Trinidadian guppies use social information and socially learn

Chouinard-Thuly, L.; Reader, S. M.

10.1101/786772 — animal behavior and cognition — Posted on 2019-09-30

137 Linking Engineered Cells to Their Digital Twins: a Version Control System for Strain Engineering

Tellechea-Luzardo, J.; Widera, P.; de Lorenzo, V.; Krasnogor, N.

10.1101/786111 — synthetic biology — Posted on 2019-09-30

138 Programmed deep septal pacing for the diagnosis of left bundle branch capture.

Jastrzebski, M.; Moskal, P.; Kusiak, A.; Bednarek, A.; Sondej, T.; Kielbasa, G.; Bednarski, A.; Vijayaraman, P.; Czarnecka, D.

10.1101/786665 — physiology — Posted on 2019-09-30

139 Deposition of Polycyclic Aromatic Hydrocarbons (PAHs) into Northern Ontario Lake Sediments

Colby, G. A.

10.1101/786913 — pharmacology and toxicology — Posted on 2019-09-30

140 An optimized procedure for robust volitional drug intake in mice

Lopez, A. J.; Johnson, A. R.; Kunnath, A. J.; Zachry, J. E.; Thibeault, K. C.; Kutlu, M. G.; Siciliano, C. A.; Calipari, E. S.

10.1101/786616 — neuroscience — Posted on 2019-09-30

141 Conserved serotonergic background of experience-dependent challenge-responding in zebrafish (Danio rerio)

Varga, Z. K.; Pejtsik, D.; Biro, L.; Zsigmond, A.; Varga, M.; Toth, B.; Salamon, V.; Annus, T.; Mikics, E.; Aliczki, M.

10.1101/785352 — neuroscience — Posted on 2019-09-30

142 Spreading depolarization and repolarization during cardiac arrest as an ultra-early marker of neurological recovery in a preclinical model

Wilson, R. H.; Crouzet, C.; Lee, D. E.; Donga, D.; Patel, A. H.; Bazrafkan, A.; Maki, N.; Rafi, M. A.; Moslehyazdi, M.; Pham, J. H.; Torabzadeh, M.; Hjelm, B. E.; Tromberg, B. J.; Steward, O.; Lopour, B. A.; Choi, B.; Akbari, Y.

10.1101/786210 — neuroscience — Posted on 2019-09-30

143 Decomposing neural responses to melodic surprise in musicians and non-musicians: evidence for a hierarchy of predictions in the auditory system

Quiroga-Martinez, D. R.; Hansen, N. C.; Hoejlund, A.; Pearce, M. T.; Brattico, E.; Vuust, P.

10.1101/786574 — neuroscience — Posted on 2019-09-30

144 Reward timing and its expression by inhibitory interneurons in the mouse primary visual cortex

Monk, K. J.; Allard, S.; Hussain Shuler, M. G.

10.1101/785824 — neuroscience — Posted on 2019-09-30

145 Behavior-dependent directional tuning in the human visual-navigation network

Nau, M.; Navarro Schroeder, T.; Frey, M.; Doeller, C. F.

10.1101/765800 — neuroscience — Posted on 2019-09-30

146 Cerebral perfusion and metabolism coupling during a critical time window provides rapid assessment of cardiac arrest severity and prognosis in a preclinical model

Wilson, R. H.; Crouzet, C.; Torabzadeh, M.; Bazrafkan, A.; Maki, N.; Alcocer, J.; Tromberg, B. J.; Choi, B.; Akbari, Y.

10.1101/785972 — neuroscience — Posted on 2019-09-30

147 Predictive Representations in Hippocampal and Prefrontal Hierarchies

Brunec, I. K.; Momennejad, I.

10.1101/786434 — neuroscience — Posted on 2019-09-30

148 Structural consequences of BMPR2 kinase domain mutations causing pulmonary arterial hypertension

Chaikuad, A.; Thangaratnarajah, C.; von Delft, F.; Bullock, A. N.

10.1101/786756 — molecular biology — Posted on 2019-09-30

149 Flaviviruses exploit fine-tuning of the interferon response to promote replication

Espada, C. E.; da Rocha, E. L.; dos Santos, A. A.; Soares, Z. G.; Malaquias, G.; Patricio, D. d. O.; Kozlova, E. G.; dos Santos, P. F.; Bordignon, J.; Sanford, T. J.; Fajardo, T.; Sweeney, T.; Bafica, A.; Mansur, D. S.

10.1101/784678 — immunology — Posted on 2019-09-30

150 Treg cells maintain selective access to IL-2 and immune homeostasis despite substantially reduced CD25 function

Hayes, E. T.; Hagan, C. E.; Campbell, D. J.

10.1101/786228 — immunology — Posted on 2019-09-30

151 Initial data release and announcement of the Fish10K: Fish 10,000 Genomes Project

Fan, G.; Song, Y.; Huang, X.; Yang, L.; Zhang, S.; Zhang, M.; Yang, X.; Chang, Y.; Zhang, H.; Li, Y.; Liu, S.; Yu, L.; Seim, I.; Feng, C.; Wang, W.; Wang, K.; Wang, J.; Xu, X.; Yang, H.; Chen, N.; Liu, X.; He, S.

10.1101/787028 — genomics — Posted on 2019-09-30

152 The genome of Mekong tiger perch (Datnioides undecimradiatus) provides insights into the phylogenic position of Lobotiformes and biological conservation

Sun, S.; Wang, Y.; Du, X.; Li, L.; Hong, X.; Huang, X.; Zhang, H.; Zhang, M.; Fan, G.; Liu, X.; Liu, S.

10.1101/787077 — genomics — Posted on 2019-09-30

153 Functions for Cdc42p BEM Adaptors in Regulating a Differentiation-Type MAP Kinase Pathway

Basu, S.; Gonzalez, B.; Li, B.; Kimble, G.; Kozminski, K.; Cullen, P. J.

10.1101/786483 — genetics — Posted on 2019-09-30

154 The Evolution and Diversity of Bacterial Transcription Factors across Time-scales

Ali, F.; Seshasayee, A. S. N.

10.1101/785691 — evolutionary biology — Posted on 2019-09-30

155 Prey partitioning between sympatric canid species revealed by DNA metabarcoding

Shi, Y.; Hoareau, Y.; Reese, E.; Wasser, S. K.

10.1101/786624 — ecology — Posted on 2019-09-30

156 Whole-plant optimality predicts changes in leaf nitrogen under variable CO2 and nutrient availability

Caldararu, S.; Thum, T.; Yu, L.; Zaehle, S.

10.1101/785329 — ecology — Posted on 2019-09-30

157 Physiological and Molecular Responses Suggest Local Adaptation of the Lobe Coral Porites lobata to the Nearshore Environment

Tisthammer, K.; Timmins-Schiffman, E.; Seneca, F.; Nunn, B.; Richmond, R.

10.1101/786673 — ecology — Posted on 2019-09-30

158 Decoding age-related changes in the spatiotemporal neural processing of speech using machine learning

Mahmud, M. S.; Ahmed, F.; Al-Fahad, R.; Moinuddin, K. A.; Yeasin, M.; Alain, C.; Bidelman, G.

10.1101/786566 — bioengineering — Posted on 2019-09-30

159 Light-Inducible Recombinases for Bacterial Optogenetics

Sheets, M. B.; Wong, W.; Dunlop, M. J.

10.1101/786533 — bioengineering — Posted on 2019-09-30

160 Neural reinstatement guides context-dependent emotional memory retrieval

Hennings, A. C.; McClay, M.; Lewis-Peacock, J. A.; Dunsmoor, J. E.

10.1101/785899 — neuroscience — Posted on 2019-09-30

161 Selecting the most important self-assessed features for predicting conversion to Mild Cognitive Impairment with Random Forest and Permutation-based methods

Gomez-Ramirez, J.; Avila-Villanueva, M.; Fernandez-Blazquez, M. A.

10.1101/785519 — neuroscience — Posted on 2019-09-30

162 Including measures of high gamma power can improve the decoding of natural speech from EEG

Synigal, S. R.; Teoh, E. S.; Lalor, E. C.

10.1101/785881 — neuroscience — Posted on 2019-09-30

163 Inhibition of the Ventral Hippocampus Increases Alcohol Drinking

Griffin, W.; Rinker, J. A.; Woodward, J. J.; Mulholland, P. J.; Becker, H. C.

10.1101/786178 — neuroscience — Posted on 2019-09-30

164 Gray matter volume and estimated brain age gap are not associated with sleep-disordered breathing in subjects from the ADNI cohort

Mohajer, B.; Abbasi, N.; Mohammadi, E.; Khazaie, H.; Osorio, R. S.; Rosenzweig, I.; Eickhoff, C. R.; Zarei, M.; Tahmasian, M.; Eickhoff, S. B.

10.1101/786707 — neuroscience — Posted on 2019-09-30

165 Dietary xanthan gum alters antibiotic efficacy against the murine gut microbiota and attenuates Clostridioides difficile colonization

Schnizlein, M. K.; Vendrov, K. C.; Edwards, S. J.; Martens, E.; Young, V. B.

10.1101/786335 — microbiology — Posted on 2019-09-30

166 A mathematical modeling approach to explore kinetics of Chimeric Antigen Receptor (CAR) T-cell Response in glioma: the CARRGO model

Sahoo, P.; Yang, X.; Abler, D.; Maestrini, D.; Adhikarla, V.; Frankhouser, D.; Cho, H.; Machuca, V.; Wang, D.; Barish, M.; Gutova, M.; Branciamore, S.; Brown, C. E.; Rockne, R. C.

10.1101/786020 — immunology — Posted on 2019-09-30

167 Subordinate effect of -21M HLA-B dimorphism on NK cell repertoire diversity and function in HIV-1 infected individuals of African origin

Moreno Cubero, E.; Ogbe, A.; Cohen, M. S.; Haynes, B. F.; Borrow, P.; Peppa, D.

10.1101/786392 — immunology — Posted on 2019-09-30

168 Does extrinsic mortality accelerate the pace of life? A bare-bones approach

Andre, J.-B.; Rousset, F.

10.1101/777698 — evolutionary biology — Posted on 2019-09-30

169 DeepMicro: deep representation learning for disease prediction based on microbiome data

Oh, M.; Zhang, L.

10.1101/785626 — bioinformatics — Posted on 2019-09-30

170 The Pop-gen Pipeline Platform: A Software Platform for Facilitating Population Genomic Analyses

Webb, A.; Knoblauch, J.; Sabankar, N.; Sukesh Kallur, A.; Hey, J.; Sethuraman, A.

10.1101/785774 — bioinformatics — Posted on 2019-09-30

171 The Association between SLC25A15 Gene Polymorphisms and Hyperornithinemia-hyperammonemia-homocitrullinuria Syndrome: Using In Silico Analysis

Mahmoud, N. A.; Ahmed, D. T.; Mohammed, Z. O.; Altyeb, F. A.; Mustafa, M. I.; Hassan, M. A.

10.1101/786301 — bioinformatics — Posted on 2019-09-30

172 Molecular Cross-Validation for Single-Cell RNA-seq

Batson, J.; Royer, L. A.; Webber, J. T.

10.1101/786269 — bioinformatics — Posted on 2019-09-30

173 Enhancing droplet-based single-nucleus RNA-seq resolution using the semi-supervised machine learning classifier DIEM

Alvarez, M.; Rahmani, E.; Garske, K. M.; Miao, Z.; Benhammou, J. N.; Ye, C. J.; Pisegna, J. R.; Pietilainen, K. H.; Halperin, E.; Pajukanta, P.

10.1101/786285 — bioinformatics — Posted on 2019-09-30

174 Pavlovian Control of Intraspinal Microstimulation to Produce Over-Ground Walking

Dalrymple, A. N.; Roszko, D. A.; Sutton, R. S.; Mushahwar, V. K.

10.1101/785741 — bioengineering — Posted on 2019-09-30

175 Single cell transcriptomics of human epidermis reveals basal stem cell transition states

Wang, S.; Drummond, M. L.; Guerrero-Juarez, C. F.; Tarapore, E.; MacLean, A. L.; Stabell, A. R.; Wu, S. C.; Gutierrez, G.; That, B. T.; Benavente, C. A.; Nie, Q.; Atwood, S. X.

10.1101/784579 — systems biology — Posted on 2019-09-30

176 Deciphering the multi-scale mechanisms of Tephrosia purpurea against polycystic ovarian syndrome (PCOS) and its major psychiatric comorbidities: studies from network-pharmacological perspective

Choudhary, N.; Choudhary, S.; Singh, V.

10.1101/785048 — systems biology — Posted on 2019-09-30

177 Respiratory Intervention Techniques Increase Selection Rate for Special Forces

Bausek, N.; Summers, S.; Sonnon, S. B.

10.1101/774620 — physiology — Posted on 2019-09-30

178 First description of the sexual stage of Venturia effusa, causal agent of pecan scab

Charlton, N. D.; Yi, M.; Bock, C. H.; Zhang, M.; Young, C. A.

10.1101/785790 — pathology — Posted on 2019-09-30

179 Mechanistic Inference of Brain Network Dynamics with Approximate Bayesian Computation

West, T. O.; Berthouze, L. O.; Farmer, S. F.; Cagnan, H.; Litvak, V.

10.1101/785568 — neuroscience — Posted on 2019-09-30

180 Hexokinase 2 is dispensable for photoreceptor development but is required for survival during aging and outer retinal stress

Weh, E.; Lutrzykowska, Z.; Smith, A.; Hager, H.; Pawar, M.; Wubben, T.; Besirli, C.

10.1101/782607 — neuroscience — Posted on 2019-09-30

181 ZapLine: a simple and effective method to remove power line artifacts

de Cheveigne, A.

10.1101/782029 — neuroscience — Posted on 2019-09-30

182 Peripherally expressed misfolded proteins remotely disrupt brain function and aggravate stroke-induced brain injury

Liu, Y.; Subedi, K.; Baride, A.; Romanova, S.; Huber, C. C.; Wang, X.; Wang, H.

10.1101/785477 — neuroscience — Posted on 2019-09-30

183 Comparative single-cell transcriptomics of complete insect nervous systems

Cocanougher, B. T.; Wittenbach, J. D.; Long, X.; Kohn, A. B.; Norekian, T. P.; Yan, J.; Colonell, J.; Masson, J.-B.; Truman, J. W.; Cardona, A.; Turaga, S.; Singer, R. H.; Moroz, L. L.; Zlatic, M.

10.1101/785931 — neuroscience — Posted on 2019-09-30

184 Prefrontal high-gamma in ECoG tags periodicity of musical rhythms in perception and imagination

Herff, S. A.; Herff, C.; Milne, A. J.; Johnson, G.; Krusienski, D. J.

10.1101/784991 — neuroscience — Posted on 2019-09-30

185 Eye movements as a readout of sensorimotor decision processes

Fooken, J.; Spering, M.

10.1101/785832 — neuroscience — Posted on 2019-09-30

186 Promiscuous receptor activation mediates glucagonostatic effects of GLP-1(9-36) and GLP-1(7-36)

Guida, C.; Miranda, C.; Wernstedt Asterholm, I.; Basco, D.; Benrick, A.; Chanclon, B.; Chibalina, M.; Harris, M.; Kellard, J.; McCulloch, L.; Real, J.; Rorsman, N.; Svendsen, B.; Yeung, H. Y.; Holst, J. J.; Reimann, F.; Shigeto, M.; Clark, A.; Thorens, B.; Rorsman, P.; Ladds, G.; Ramracheya, R.

10.1101/785667 — molecular biology — Posted on 2019-09-30

187 Scaffold-free human mesenchymal stem cell construct geometry regulates long bone regeneration

Herberg, S.; Varghai, D.; Alt, D. S.; Dang, P. N.; Park, H.; Cheng, Y.; Shin, J.-Y.; Dikina, A. D.; Boerckel, J. D.; Rolle, M. W.; Alsberg, E.

10.1101/785386 — bioengineering — Posted on 2019-09-30

188 Control of Astrocyte Quiescence and Activation in a Synthetic Brain Hydrogel

Galarza, S.; Crosby, A. J.; Pak, C.; Peyton, S.

10.1101/785683 — bioengineering — Posted on 2019-09-30

189 Records of RNA localization through covalent tagging

Medina-Munoz, H. C.; Lapointe, C. P.; Porter, D. F.; Wickens, M.

10.1101/785816 — genomics — Posted on 2019-09-30

190 Rapid ordering of barcoded transposon insertion libraries of anaerobic bacteria

Shiver, A. L.; Culver, R.; Deutschbauer, A. M.; Huang, K.

10.1101/780593 — genetics — Posted on 2019-09-30

191 Genetic diversity and haplotypic structure of a Saudi population sample using Investigator Argus X-12 amplification kit

Messaoudi, S. A.; Ramesh, S.; Alsaleh, A.; Albajjah, M.; Al Snan, N.; Chaudhary, A. R.

10.1101/760819 — genetics — Posted on 2019-09-30

192 Large single-locus effects for maturation timing are mediated via condition variation in Atlantic salmon

Debes, P. V.; Piavchenko, N.; Ruokolainen, A.; Ovaskainen, O.; Moustakas-Verho, J. E.; Parre, N.; Aykanat, T.; Erkinaro, J.; Primmer, C. R.

10.1101/780437 — evolutionary biology — Posted on 2019-09-30

193 Intraflagellar transport complex B proteins regulate the Hippo effector Yap1 during cardiogenesis

Peralta, M.; Jerabkova, K.; Lucchesi, T.; Ortiz, L. L.; Vitre, B.; Han, D.; Guillemot, L.; Dingare, C.; Sumara, I.; Mercader, N.; Lecaudey, V.; Delaval, B.; Meilhac, S. M.; Vermot, J.

10.1101/777128 — developmental biology — Posted on 2019-09-30

194 Pharmacologically diverse antidepressant drugs disrupt the interaction of BDNF receptor TRKB and the endocytic adaptor AP-2

Fred, S. M.; Laukkanen, L.; Brunello, C.; Vesa, L.; Goos, H.; Cardon, I.; Moliner, R.; Maritzen, T.; Varjosalo, M.; Casarotto, P. C.; Castren, E.

10.1101/591909 — pharmacology and toxicology — Posted on 2019-09-30

195 Approximate Bayesian Inference for a Mechanistic Model of Vesicle Release at a Ribbon Synapse

Schroeder, C.; James, B.; Lagnado, L.; Berens, P.

10.1101/669218 — neuroscience — Posted on 2019-09-30

196 Organic management promotes natural pest control through enhanced plant resistance to insects

Blundell, R.; Schmidt, J. E.; Igwe, A.; Vannette, R. L.; Gaudin, A. C.; Casteel, C. L. L.

10.1101/787549 — plant biology — Posted on 2019-09-30

197 Flexibility of intrinsically disordered degrons in AUX/IAA proteins reinforces auxin receptor assemblies

Niemeyer, M.; Moreno Castillo, E.; Ihling, C. H.; Iacobucci, C.; Wilde, V.; Hellmuth, A.; Hoehenwarter, W.; Samodelov, S. L.; Zurbriggen, M. D.; Kastritis, P. L.; Sinz, A.; Calderon Villalobos, L. I. A.

10.1101/787770 — plant biology — Posted on 2019-09-30

198 Discovery of novel Defense Regulated WD40-repeat proteins DRW1/2 and their roles in plant immunity

Miller, J. C.; Clay, N. K.; Barco, B.

10.1101/786848 — plant biology — Posted on 2019-09-30

199 Multiple ER-to-nucleus stress signaling pathways become active during Plantago asiatica mosaic virus and Turnip mosaic virus infection in Arabidopsis thaliana.

Gayral, M.; Gaguancela, O. A.; Vasquez, E.; Herath, V.; Pang, M.; Florez, F.; Dickman, M. B.; Verchot, J.

10.1101/786137 — plant biology — Posted on 2019-09-30

200 Anticipatory coadaptation of ankle stiffness and sensorimotor gain for standing balance

Le Mouel, C.; Brette, R.

10.1101/506493 — neuroscience — Posted on 2019-09-30

201 Evolution of preferences in structured populations: genes, guns, and culture

Alger, I.; Weibull, J.; Lehmann, L.

10.1101/408435 — evolutionary biology — Posted on 2019-09-30

202 A combined morphometric and statistical approach to assess non-monotonicity in the developing mammary gland of rats in the CLARITY-BPA study

Montevil, M.; Acevedo, N.; Schaeberle, C.; Bharadwaj, M.; Fenton, S.; Soto, A. M.

10.1101/783019 — developmental biology — Posted on 2019-09-30

203 Natural IgE promotes epithelial hyperplasia and inflammation-driven tumour growth

Strid, J.; Hayes, M. D.; Ward, S.; Crawford, G.; Seoane, R. C.; Jackson, W. D.; Kipling, D.; Voehringer, D.; Dunn-Walters, D.

10.1101/782805 — cancer biology — Posted on 2019-09-30

204 Spinal signaling of C-fiber mediated pleasant touch in humans

Marshall, A. G.; Sharma, M. L.; Marley, K.; Olausson, H.; McGlone, F.

10.1101/780635 — physiology — Posted on 2019-09-30

205 CO2 per se activates carbon dioxide receptors

Xu, P.; Wen, X.; Leal, W.

10.1101/787481 — neuroscience — Posted on 2019-09-30

206 Bacterial DNA promotes Tau aggregation

Tetz, G.; Pinho, M.; Soto, C.; Pritzkow, S.; Mendez, N.; Tetz, V.

10.1101/786640 — microbiology — Posted on 2019-09-30

207 Piezo1 Induces Local Curvature in a Mammalian Membrane and Forms Specific Protein-Lipid Interactions

Buyan, A.; Cox, C.; Rae, J.; Barnoud, J.; Li, J.; Cvetovska, J.; Bastiani, M.; Chan, H. S.; Hodson, M. P.; Martinac, B.; Parton, R. G.; Marrink, S.-J.; Corry, B.

10.1101/787531 — biophysics — Posted on 2019-09-30

208 A cell surface O-glycosylated peptide, AGP21, acts on the brassinosteroid pathway and modulates root hair cell fate

Borassi, C.; Ricardi, M.; Gloazzo Dorosz, J. A.; Pol Fachin, L.; Carignani, M.; Marzol, E.; Mangano, S.; Rodriguez Garcia, D. R.; Martinez Pacheco, J.; Rondon Gurerrero, Y. d. C.; Velasquez, S. M.; Villavicencio, B.; Ciancia, M.; Seifert, G.; Verli, H.; Estevez, J. M.

10.1101/787143 — plant biology — Posted on 2019-09-30

209 C9orf72 arginine-rich dipeptide repeat proteins disrupt importin β-mediated nuclear import

Hayes, L. R.; Duan, L.; Bowen, K.; Kalab, P.; Rothstein, J. D.

10.1101/787473 — cell biology — Posted on 2019-09-30

210 Quantitative characterization of the path of glucose diffusion facilitated by human glucose transporter 1

Chen, L. Y.

10.1101/787259 — biophysics — Posted on 2019-09-30

211 Mechanism of gating and partial agonist action in the glycine receptor

Gouaux, E.; Yu, J.; Zhu, H.; Du, J.; Lu, W.; Tajkhorshid, E.; Shahoei, R.; Wang, Y.; Sivilotti, L.; Lape, R.; Greiner, T.

10.1101/786632 — neuroscience — Posted on 2019-09-30

212 Mammalian Y RNAs are modified at discrete guanosine residues with N-glycans

Flynn, R. A.; Smith, B. A. H.; Johnson, A. G.; Pedram, K.; George, B. M.; Malaker, S. A.; Majzoub, K.; Carette, J. E.; Bertozzi, C. R.

10.1101/787614 — molecular biology — Posted on 2019-09-30

213 New method for high-throughput measurements of viscosity in submicrometer-sized membrane systems

Chwastek, G.; Petrov, E. P.; Saenz, J. P.

10.1101/736785 — biophysics — Posted on 2019-09-30

214 TrackSig: reconstructing evolutionary trajectories of mutations in cancer

Rubanova, Y.; Shi, R.; Li, R.; Wintersinger, J.; Sahin, N.; Deshwar, A.; Morris, Q.; PCAWG Evolution and Heterogeneity Working Group, ; PCAWG network,

10.1101/260471 — bioinformatics — Posted on 2019-09-30

215 Yellow strawberries and red bananas: The influence of object-colour knowledge on emerging object representations in the brain

Teichmann, L.; Quek, G. L.; Robinson, A.; Grootswagers, T.; Carlson, T.; Rich, A.

10.1101/533513 — neuroscience — Posted on 2019-09-30

216 Dissociable Neural Correlates of Uncertainty Underlie Different Exploration Strategies

Tomov, M.; Truong, V.; Hundia, R.; Gershman, S.

10.1101/478131 — neuroscience — Posted on 2019-09-30

217 Panmixia across elevation in thermally sensitive Andean dung beetles

Linck, E. B.; Sheldon, K. S.; Celi, J. E.

10.1101/783233 — evolutionary biology — Posted on 2019-09-30

218 Seasonal influenza circulation patterns and projections for September 2019 to September 2020

Bedford, T.; Huddleston, J.; Potter, B.; Neher, R.

10.1101/780627 — evolutionary biology — Posted on 2019-09-30

219 Human gut microbiota networks disturbance by parasites in indigenous communities: Effect on bacteria genera related to depression incidence subnetworks

Ramirez-Carrillo, E.; Gaona, O.; Nieto, J.; Sanchez-Quinto, A.; Cerqueda-Garcia, D.; Falcon, L. I.; Rojas-Ramos, O.; Gonzalez-Santoyo, I.

10.1101/784470 — ecology — Posted on 2019-09-30

220 Real-time dynamics of Plasmodium NDC80 as a marker for the kinetochore during atypical mitosis and meiosis

Pandey, R.; Zeeshan, M.; Ferguson, D. J. P.; Markus, R.; Brady, D.; Daniel, E.; Stanway, R. R.; Holder, A. A.; Guttery, D. S.; Tewari, R.

10.1101/767830 — cell biology — Posted on 2019-09-30

221 Expression of heat shock protein 70 is insufficient to extend Drosophila melanogaster longevity

Xiao, C.; Hull, D.; Qiu, S.; Yeung, J.; Zheng, J.; Barwell, T.; Robertson, R. M.; Seroude, L.

10.1101/753269 — genetics — Posted on 2019-09-30

222 A systematic survey of regional multitaxon biodiversity: evaluating strategies and coverage

Brunbjerg, A. K.; Bruun, H. H.; Broendum, L.; Classen, A. T.; Dalby, L.; Fog, K.; Froeslev, T. G.; Goldberg, I.; Hansen, A. J.; Hansen, M. D. D.; Hoeye, T. T.; Illum, A. A.; Laessoee, T.; Newman, G.; Skipper, L.; Soechting, U.; Ejrnaes, R.

10.1101/158030 — ecology — Posted on 2019-09-30

223 Mammary mechanobiology: mechanically-activated ion channels in lactation and involution

Stewart, T. A.; Hughes, K.; Stevenson, A. J.; Marino, N.; Ju, A. L.; Morehead, M.; Davis, F. M.

10.1101/649038 — cell biology — Posted on 2019-09-30

224 Mass Spectrometry-Based Plasma Proteomics: Considerations from Sample Collection to Achieving Translational Data

Ignjatovic, V.; Geyer, P. E.; Palaniappan, K.; Chaaban, J. E.; Omenn, G. S.; Baker, M.; Deutsch, E.; Schwenk, J.

10.1101/716563 — molecular biology — Posted on 2019-09-29

225 Ecological scaffolding and the evolution of individuality: the transition from cells to multicellular life

Black, A. J.; Bourrat, P.; Rainey, P. B.

10.1101/656660 — evolutionary biology — Posted on 2019-09-29

226 Simultaneous Targeting of XPO1 and BCL2 as an Effective Treatment Strategy for Double-Hit Lymphoma

Liu, Y.; Azizian, N.; Dou, Y.; Pham, L.; Li, Y.

10.1101/688093 — cancer biology — Posted on 2019-09-29

227 DNA writing at a single genomic site enables lineage tracing and analog recording in mammalian cells

Loveless, T. B.; Grotts, J. H.; Schechter, M. W.; Forouzmand, E.; Carlson, C. K.; Agahi, B. S.; Liang, G.; Ficht, M.; Liu, B.; Xie, X.; Liu, C. C.

10.1101/639120 — synthetic biology — Posted on 2019-09-29

228 Spaced training forms complementary long-term memories of opposite valence in Drosophila

Jacob, P. F.; Waddell, S.

10.1101/785618 — neuroscience — Posted on 2019-09-29

229 Brain-derived neurotrophic factor and TrkB levels in mice that lack vesicular zinc: Effects of age and sex

McAllister, B. B.; Bihelek, N.; Mychasiuk, R. M.; Dyck, R. H.

10.1101/421453 — neuroscience — Posted on 2019-09-29

230 Structural studies of the Tudor domain from the Bombyx homolog of Drosophila PAPI: Implication to piRNA biogenesis

Hubbard, P. A.; Pan, X.; McNally, R.; Kirino, Y.; Murali, R.

10.1101/786731 — biophysics — Posted on 2019-09-29

231 Assessing positioning in enzymatic catalysis via ketosteroid isomerase conformational ensembles

Yabukarski, F.; Biel, J. T.; Pinney, M. M.; Doukov, T.; Powers, A. S.; Fraser, J. S.; Herschlag, D.

10.1101/786327 — biophysics — Posted on 2019-09-29

232 Crystal structure of β-arrestin 2 in complex with an atypical chemokine receptor phosphopeptide reveals an alternative active conformation

Min, K.; Yoon, H.-J.; Park, J. Y.; Baidya, M.; Dwivedi, H.; Maharana, J.; Chung, K. Y.; Shukla, A. K.; Lee, H. H.

10.1101/785527 — biochemistry — Posted on 2019-09-29

233 Proteins That Interact with the Mucin-Type Glycoprotein Msb2p Include Regulators of the Actin Cytoskeleton

Prabhakar, A.; Vadaie, N.; Krzystek, T.; Cullen, P. J.

10.1101/786475 — biochemistry — Posted on 2019-09-29

234 ABEL-FRET: tether-free single-molecule FRET with hydrodynamic profiling

Wilson, H. S.; Wang, Q.

10.1101/786897 — biophysics — Posted on 2019-09-29

235 Group-Level Analysis of Induced Electric Field in Deep Brain Regions by Different TMS Coils

Gomez-Tames, J.; Hamasaka, A.; Hirata, A.; Laakso, I.; Lu, M.; Ueno, S.

10.1101/786459 — biophysics — Posted on 2019-09-29

236 A high-affinity human PD-1/PD-L2 complex informs avenues for small-molecule immune checkpoint drug discovery

Tang, S.; Kim, P. S.

10.1101/786319 — biochemistry — Posted on 2019-09-29

237 Hepatic JNK-mediated bile acid homeostasis regulates liver cancer through PPARα

Manieri, E.; Esteban-Lafuente, L.; Rodriguez, E.; Leiva-Vega, L.; Chen, C.; Cubero, F. J.; Barrett, T.; Cavanagh-Kyros, J.; Seruggia, D.; Monte, M. J.; Marin, J. J.; Davis, R. R. J.; Mora, A.; Sabio, G.

10.1101/783761 — cancer biology — Posted on 2019-09-29

238 miRNA858b Inhibits Proanthocyanidin Accumulation by Repression of DkMYB19 and DkMYB20 in Persimmon

Yang, S. c.; Zhang, M.; Xu, L. q.; Luo, Z. r.; Zhang, Q. l.

10.1101/783431 — molecular biology — Posted on 2019-09-29

239 A nonlinear relationship between prediction errors and learning rates in human reinforcement learning

Pulcu, E.

10.1101/751222 — neuroscience — Posted on 2019-09-29

240 Fibroblast-specific genome-scale modelling predicts an imbalance in amino acid metabolism in Refsum disease

Wegrzyn, A. B.; Herzog, K.; Gerding, A.; Kwiatkowski, M.; Wolters, J. C.; Dolga, A. M.; van Lint, A. E. M.; Wanders, R. J. A.; Waterham, H. R.; Bakker, B. M.

10.1101/776575 — systems biology — Posted on 2019-09-29

241 Deer slow down litter decomposition by reducing litter quality in a temperate forest

Chollet, S.; Maillard, M.; Schorghuber, J.; Grayston, S.; Martin, J.-L.

10.1101/690032 — ecology — Posted on 2019-09-29

242 PHD3 controls energy homeostasis and exercise capacity.

Yoon, H.; Spinelli, J. B.; Zaganjor, E.; Wong, S. J.; German, N. J.; Randall, E. C.; Dean, A.; Clermont, A.; Paulo, J. J.; Garcia, D.; Li, H.; Agar, N. Y. R.; Goodyear, L. J.; Shaw, R. J.; Gygi, S. P.; Auwerx, J.; Haigis, M. C.

10.1101/781765 — cell biology — Posted on 2019-09-29

243 Attention updates the perceived position of moving objects

Nakayama, R.; Holcombe, A. O.

10.1101/543215 — neuroscience — Posted on 2019-09-29

244 Adaptive walks on high-dimensional fitness landscapes and seascapes with distance-dependent statistics

Agarwala, A.; Fisher, D. S.

10.1101/435669 — evolutionary biology — Posted on 2019-09-29

245 AIDE: annotation-assisted isoform discovery with high precision

Li, W. V.; Li, S.; Tong, X.; Deng, L.; Shi, H.; Li, J. J.

10.1101/437350 — bioinformatics — Posted on 2019-09-29

246 Theory of Minds: Managing mental state inferences in working memory is associated with the dorsomedial subsystem of the default network and social integration

Meyer, M.; Collier, E.

10.1101/697391 — neuroscience — Posted on 2019-09-29

247 Derivation of oligodendrocyte precursor cells from human bone marrow stromal cells and use for re-myelination in the congenitally dysmyelinated brain

Lam, G.; Shea, G. K.-H.; Wu, K. L. K.; Li, M. T.-S.; Kwok, C. H.; Chan, Z. C. K.; Wong, C. Y.; Tsui, A. Y. P.; Shum, D. K. Y.; Chan, Y. S.

10.1101/658997 — neuroscience — Posted on 2019-09-29

248 Information use in foraging flocks of songbirds - no evidence for social transmission of patch quality

Hillemann, F.; Cole, E. F.; Sheldon, B. C.; Farine, D. R.

10.1101/784777 — animal behavior and cognition — Posted on 2019-09-29

249 A new role of the Mus81 nuclease for replication completion after fork restart

Pardo, B.; Moriel-Carretero, M.; Vicat, T.; Aguilera, A.; Pasero, P.

10.1101/785501 — molecular biology — Posted on 2019-09-28

250 Microhabitats shape diversity-productivity relationships in freshwater bacterial communities

Schmidt, M. L.; Biddanda, B. A.; Weinke, A. D.; Chiang, E.; Januska, F.; Props, R.; Denef, V. J.

10.1101/231688 — ecology — Posted on 2019-09-29

251 Automatic error control during forward flux sampling of rare events in master equation models

Klein, M. C.; Roberts, E.

10.1101/254896 — biophysics — Posted on 2019-09-29

252 Dysregulation of histone acetylation and decoupling from transcription in Parkinson disease

Toker, L.; Tran, G. T.; Sundaresan, J.; Tysnes, O.-B.; Alves, G.; Haugarvoll, K.; Nido, G. S.; Dolle, C.; Tzoulis, C.

10.1101/785550 — genomics — Posted on 2019-09-28

253 Evolution of NLR resistance genes with non-canonical N-terminal domains in wild tomato species

Seong, K.; Seo, E.; Li, M.; Staskawicz, B.

10.1101/786194 — plant biology — Posted on 2019-09-28

254 Functionally overlapping variants control TB susceptibility in Collaborative Cross mice

Smith, C. M.; Proulx, M. K.; Lai, R.; Kiritsy, M. C.; Bell, T. A.; Hock, P.; Pardo-Manuel de Villena, F.; Ferris, M. T.; Baker, R. E.; Behar, S. M.; Sassetti, C. M.

10.1101/785725 — microbiology — Posted on 2019-09-28

255 Prevalent pH controls the capacity of Galdieria maxima to use ammonia and nitrate as a nitrogen source.

Iovinella, M.; Carbone, D. A.; Cioppa, D.; Davis, S.; Innangi, M.; Esposito, S.; Ciniglia, C.

10.1101/785287 — plant biology — Posted on 2019-09-28

256 Defective excitatory/inhibitory synapse balance and increased neuron apoptosis in a zebrafish model of Dravet syndrome

Brenet, A.; Hassan-Abdi, R.; Somkhit, J.; Yanicostas, C.; Soussi-Yanicostas, N.

10.1101/781393 — neuroscience — Posted on 2019-09-28

257 Systematic assessment of regulatory effects of human disease variants in pluripotent cells

Bonder, M. J.; Smail, C.; Gloudemans, M. J.; Fresard, L.; Jakubosky, D.; D'Antonio, M.; Li, X.; Ferraro, N. M.; Carcamo-Orive, I.; Mirauta, B.; Seaton, D. D.; Cai, N.; Horta, D.; HipSci Consortium, ; iPSCORE Consortium, ; GENESiPS Consortium, ; PhLiPS Consortium, ; Smith, E. N.; Frazer, K. A.; Montgomery, S. B.; Stegle, O.

10.1101/784967 — genomics — Posted on 2019-09-28

258 Patchy, incomplete, and heterogeneous X-inactivation in the human placenta

Phung, T. N.; Olney, K. C.; Kliman, H. J.; Wilson, M. A.

10.1101/785105 — genomics — Posted on 2019-09-28

259 A phased, diploid assembly of the Cascade hop (Humulus lupulus) genome reveals patterns of selection and haplotype variation

Padgitt-Cobb, L. K.; Kingan, S.; Wells, J.; Elser, J.; Kronmiller, B.; Moore, D.; Concepcion, G.; Peluso, P.; Rank, D. R.; Jaiswal, P. R.; Henning, J.; Hendrix, D. A.

10.1101/786145 — genomics — Posted on 2019-09-28

260 Genetic factor for twisting legume pods identified by fine-mapping of shattering-related traits in azuki bean and yard-long bean

Takahashi, Y.; Kongjaimun, A.; Muto, C.; Kobayashi, Y.; Kumagai, M.; Sakai, H.; Satou, K.; Teruya, K.; Shiroma, A.; Shimoji, M.; Hirano, T.; Isemura, T.; Saito, H.; Baba-Kasai, A.; Kaga, A.; Somta, P.; Tomooka, N.; Naito, K.

10.1101/774844 — genetics — Posted on 2019-09-28

261 Gap junction coding innexin in Lymnaea stagnalis: sequence analysis and characterization in tissues and the central nervous system

Mersman, B.; Jolly, S.; Lin, Z.; Xu, F.

10.1101/785451 — neuroscience — Posted on 2019-09-28

262 Admixture-enabled selection for rapid adaptive evolution in the Americas

Norris, E. T.; Rishishwar, L.; Chande, A. T.; Conley, A. B.; Ye, K.; Valderrama-Aguirre, A.; Jordan, I. K.

10.1101/783845 — genomics — Posted on 2019-09-28

263 Differential effects of opioid receptor modulators on motivational and stress-coping behaviors in the back-translational rat IFN-α depression model

Callaghan, C. K.; O'Mara, S.

10.1101/769349 — neuroscience — Posted on 2019-09-28

264 Striatal Nurr1 Facilitates the Dyskinetic State and Exacerbates Levodopa-Induced Dyskinesia in a Rat Model of Parkinson’s Disease

Sellnow, R. C.; Steece-Collier, K.; Altwal, F.; Sandoval, I. M.; Kordower, J. H.; Collier, T. J.; Sortwell, C. E.; West, A. R.; Manfredsson, F.

10.1101/768374 — neuroscience — Posted on 2019-09-28

265 PHD3 controls energy homeostasis and exercise capacity.

10.1101/781765 — cell biology — Posted on 2019-09-28

266 An open source microfluidic sorter for Caenorhabditis nematodes

Timmermeyer, N.; Banse, S. A.; North, J. H.; Sottile, M.; Lockery, S. R.; Phillips, P. C.

10.1101/780502 — bioengineering — Posted on 2019-09-28

267 Genome Scans for Selection and Introgression based on k-nearest Neighbor Techniques

Pfeifer, B.; Alachiotis, N.; Pavlidis, P.; Schimek, M. G.

10.1101/752758 — bioinformatics — Posted on 2019-09-28

268 Accumulated degeneration of transcriptional regulation contributes to disease development and detrimental clinical outcomes of Alzheimer’s disease

Meng, G.; Lu, D.; Yu, F.; Sun, J.; Ding, C.; Sun, Y.; Liu, X.; Dai, J.; Jin, W.; Zhang, W.

10.1101/779249 — systems biology — Posted on 2019-09-28

269 Comparisons of dual isogenic human iPSC pairs identify functional alterations directly caused by an epilepsy associated SCN1A mutation

Xie, Y.; Ng, N. N.; Safrina, O. S.; Ramos, C. M.; Ess, K. C.; Schwartz, P. H.; Smith, M. A.; O'Dowd, D. K.

10.1101/524835 — neuroscience — Posted on 2019-09-28

270 Comparing Functional Connectivity Matrices: A Geometry-Aware Approach applied to Participant Identification

Venkatesh, M.; Jaja, J.; Pessoa, L.

10.1101/687830 — neuroscience — Posted on 2019-09-28

271 SmartGraph: A Network Pharmacology Investigation Platform

Zahoranszky-Kohalmi, G.; Sheils, T.; Oprea, T. I.

10.1101/707869 — bioinformatics — Posted on 2019-09-28

272 Enhanced biodegradation of naphthalene by Pseudomonas sp. consortium immobilized in calcium alginate beads

Dutta, K.; Shityakov, S.; Khalifa, I.; Ballav, S.; Jana, D.; Manna, T.; Karmakar, M.; Raul, P.; Guchhait, K. C.; Ghosh, C.

10.1101/631135 — microbiology — Posted on 2019-09-28

273 Dissecting the eQTL micro-architecture in Caenorhabditis elegans

Sterken, M. G.; Bevers, R. P. J.; Volkers, R. J. M.; Riksen, J. A. G.; Kammenga, J. E.; Snoek, L. B.

10.1101/651885 — genetics — Posted on 2019-09-28

274 Microstructural white matter and links with subcortical structures in chronic schizophrenia: A free-water imaging approach.

Gurholt, T. P.; Haukvik, U. K.; Lonning, V.; Jönsson, E. G.; Pasternak, O.; Agartz, I.

10.1101/621482 — neuroscience — Posted on 2019-09-28

275 Communicating compositional patterns

Schulz, E.; Quiroga, F.; Gershman, S.

10.1101/451161 — animal behavior and cognition — Posted on 2019-09-28

276 Mature dentate granule cells show different intrinsic properties depending on the behavioral context of their activation

Peret, A.; Pleau, C.; Pearlstein, E.; Scalfati, T.; Marti, G.; Michel, F.; Crepel, V.

10.1101/309906 — neuroscience — Posted on 2019-09-28

277 Iroki: automatic customization and visualization of phylogenetic trees

Moore, R. M.; Harrison, A. O.; McAllister, S. M.; Polson, S. W.; Wommack, K. E.

10.1101/106138 — bioinformatics — Posted on 2019-09-28

278 Maternal hypothyroidism in mice influences glucose metabolism in adult offspring

Kemkem, Y.; Nasteska, D.; Hodson, D.; Guillou, A.; Mollard, P.; Bargi-Souza, P.; Peliciari-Garcia, R. A.; De Bray, A.; Schaeffer, M.

10.1101/785030 — physiology — Posted on 2019-09-28

279 Large-scale network analysis captures biological features of bacterial plasmids

Acman, M.; van Dorp, L.; Santini, J. M.; Balloux, F.

10.1101/785212 — genomics — Posted on 2019-09-28

280 Information use in foraging flocks of songbirds - no evidence for social transmission of patch quality

Hillemann, F.; Cole, E. F.; Sheldon, B. C.; Farine, D. R.

10.1101/784777 — animal behavior and cognition — Posted on 2019-09-28

281 Rapid degradation of C. elegans proteins at single-cell resolution with a synthetic auxin

Martinez, M. A.; Kinney, B. A.; Medwig-Kinney, T. N.; Ashley, G.; Ragle, J. M.; Johnson, L.; Aguilera, J.; Hammell, C. M.; Ward, J. D.; Matus, D. Q.

10.1101/716837 — developmental biology — Posted on 2019-09-28

282 Antibody-induced crosslinking and cholesterol-sensitive, anomalous diffusion of nicotinic acetylcholine receptors

Mosqueira, A.; Camino, P. A.; Barrantes, F. J.

10.1101/744664 — biophysics — Posted on 2019-09-28

283 Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 3.0

Deutsch, E. W.; Lane, L.; Overall, C. M.; Bandeira, N.; Baker, M. S.; Pineau, C.; Moritz, R. L.; Corrales, F.; Orchard, S.; Van Eyk, J. E.; Paik, Y.-K.; Weintraub, S. T.; Vandenbrouck, Y.; Omenn, G. S.

10.1101/733576 — bioinformatics — Posted on 2019-09-28

284 The origin of physiological local mGluR1 supralinear Ca2+ signals in cerebellar Purkinje neurons

Canepari, M.; Ait Ouares, K.

10.1101/785493 — neuroscience — Posted on 2019-09-27

285 UbiFast, a rapid and deep-scale ubiquitylation profiling approach for biology and translational research

Udeshi, N. D.; Mani, D.; Satpathy, S.; Fereshetian, S.; Gasser, J.; Svinkina, T.; Ebert, B.; Mertins, P.; Carr, S. A.

10.1101/785378 — biochemistry — Posted on 2019-09-27

286 Dissecting the structural and functional roles of a vicinal iron-binding site in encapsulated ferritins

Piergentili, C.; He, D.; Ross, J.; Stanley, W. A.; Adam, L.; Mackay, C. L.; Waldron, K. J.; Clarke, D. J.; Marles-Wright, J.

10.1101/785121 — biochemistry — Posted on 2019-09-27

287 Rapid and Sustained Homeostatic Control of Presynaptic Exocytosis at a Central Synapse

Delvendahl, I.; Kita, K.; Mueller, M.

10.1101/785535 — neuroscience — Posted on 2019-09-27

288 A conserved regulatory switch controls phosphatase activity and specificity

Ho, K.; Bradshaw, N.

10.1101/784843 — biochemistry — Posted on 2019-09-27

289 Clinical evaluation of postoperative analgesia and serum biochemical changes of paracetamol compared to meloxicam and carprofen in bitches undergoing ovariohysterectomy

Hernandez -Avalos, I.; Valverde, A.; Ibancovichi, J. A.; Sanchez-Aparicio, P.; Recillas-Morales, S.; Osorio-Avalos, J.; Rodrigez- Velazquez, D.; Miranda-Cortes, A.

10.1101/785246 — pharmacology and toxicology — Posted on 2019-09-27

290 Development of a simple method for differential delivery of volatile anaesthetics to the spinal cord of the rabbit

Zhang, P.; Li, Y.; Xu, T.

10.1101/785253 — pharmacology and toxicology — Posted on 2019-09-27

291 Evolution from total variation to nonlinear sparsifying transform for sparse-view CT image reconstruction

DONG, J.; Han, C.; Qin, Z.; Che, Y.

10.1101/785261 — bioinformatics — Posted on 2019-09-27

292 Knowledge discovery with Bayesian Rule Learning for actionable biomedicine

Gopalakrishnan, V.; Balasubramanian, J. B.; Kip, K. E.; Reis, S. E.

10.1101/785279 — bioinformatics — Posted on 2019-09-27

293 The fast and the frugal: Divergent locomotory strategies drive limb lengthening in theropod dinosaurs

Dececchi, T. A.; Mloszewska, A.; Larsson, H.; Holtz, T. R.; Habib, M. B.

10.1101/785238 — paleontology — Posted on 2019-09-27

294 Monodelphis domestica as a fetal intra-cerebral inoculation model for Zika virus pathogenesis

Thomas, J. M.; Garcia, J.; Terry, M.; Lozano, I.; Mahaney, S.; Quintanilla, O.; Carlo-Silva, D.; Morales, M.; VandeBerg, J.

10.1101/785220 — pathology — Posted on 2019-09-27

295 Rap-protein paralogs of B. thuringiensis: a multifunctional and redundant regulatory repertoire for the control of collective functions.

Gastelum, G.; de la Torre, M.; Rocha, J.

10.1101/784611 — microbiology — Posted on 2019-09-27

296 The role of 3’UTR-protein complexes in the regulation of protein multifunctionality and subcellular localization

Ribeiro, D. M.; Prod'homme, A.; Teixeira, A.; Zanzoni, A.; Brun, C.

10.1101/784702 — systems biology — Posted on 2019-09-27

297 Interfering with a memory without erasing its trace

Lange, G.; Senden, M.; Radermacher, A.; De Weerd, P.

10.1101/783654 — neuroscience — Posted on 2019-09-27

298 Loss of cerebellar function selectively affects intrinsic rhythmicity of eupneic breathing

Liu, Y.; Qi, S.; Thomas, F.; Correia, B. L.; Taylor, A. P.; Sillitoe, R.; Heck, D. H.

10.1101/784769 — animal behavior and cognition — Posted on 2019-09-27

299 FMRP promotes RNA localization to neuronal projections through interactions between its RGG domain and G-quadruplex sequences

Goering, R.; Hudish, L. I.; Guzman, B. B.; Raj, N.; Bassell, G. J.; Russ, H. A.; Dominguez, D.; Taliaferro, J. M.

10.1101/784728 — molecular biology — Posted on 2019-09-27

300 Design and Optimization Protocol for High-Dimensional Immunophenotyping Assays using Spectral Flow Cytometry

Ferrer-Font, L.; Pellefigues, C.; Mayer, J. U.; Small, S.; Jaimes, M. C.; Price, K. M.

10.1101/784884 — immunology — Posted on 2019-09-27

301 Molecular Atlas Of The Adult Mouse Brain

Ortiz, C.; Fernandez Navarro, J.; Jurek, A.; Martin, A.; Lundeberg, J.; Meletis, K.

10.1101/784181 — neuroscience — Posted on 2019-09-27

302 The Manganese Salt (MnJ) Functions as A Potent Universal Adjuvant

Zhang, R.; Wang, C.; Guan, Y.; Wei, X.; Sha, M.; Jing, M.; Lv, M.; Xu, J.; Wan, Y.; Jiang, Z.

10.1101/783910 — immunology — Posted on 2019-09-27

303 Responses of global waterbird populations to climate change vary with latitude

Amano, T.; Szekely, T.; Wauchope, H. S.; Sandel, B.; Nagy, S.; Mundkur, T.; Langendoen, T.; Blanco, D.; Michel, N. L.; Sutherland, W. J.

10.1101/784900 — ecology — Posted on 2019-09-27

304 Systemic muscle wasting and coordinated tumour response drive tumourigenesis

Newton, H.; Wang, Y.-F.; Camplese, L.; Brown, A. E. X.; Hirabayashi, S.

10.1101/785022 — cancer biology — Posted on 2019-09-27

305 Checklist and practical identification key for the cichlid fishes (Cichliformes: Cichlidae) of the La Plata drainage in Bolivia, including three new geographical records

Hablutzel, P. I.; B. Huanto, R.

10.1101/785006 — zoology — Posted on 2019-09-27

306 A Missense Point Mutation in Nerve Growth Factor (NGFR100W) Results in Selective Peripheral Sensory Neuropathy

Yang, W.; Sung, K.; Xu, W.; Rodriguez, M. J.; Wu, A.; Santos, S. A.; Fang, S.; Uber, R. K.; Dong, S. X.; Guillory, B. C.; Orain, X.; Raus, J.; Jolivalt, C.; Calcutt, N.; Ding, J.; Rissman, R. A.; Wu, C.

10.1101/784660 — neuroscience — Posted on 2019-09-27

307 Positive relation between arcuate fasciculus white matter fiber structure and severity of auditory hallucinations: A DTI tractography study

Falkenberg, L. E.; Westerhausen, R.; Johnsen, E.; Kroken, R. A.; Loberg, E.-M.; Beresniewicz, J.; Kazimierczak, K.; Kompus, K.; Ersland, L.; Hugdahl, K.

10.1101/784942 — neuroscience — Posted on 2019-09-27

308 Rhythmic variations in prefrontal inter-neuronal correlations, their underlying mechanisms and their behavioral correlates

Ben Hadj Hassen, S.; Gaillard, C.; Astrand, E.; Wardak, C.; Ben Hamed, S.

10.1101/784850 — neuroscience — Posted on 2019-09-27

309 A quantitative binding model for the Apl protein, the dual purpose recombination-directionality factor and lysis-lysogeny regulator of bacteriophage 186

Cutts, E.; Egan, B.; Dodd, I. B.; Shearwin, K. E.

10.1101/784983 — molecular biology — Posted on 2019-09-27

310 A Distinct Subset of Human Short Introns: U2AF Heterodimer Is Replaced by SPF45 (RBM17) as General Splicing Factor

Fukumura, K.; Yoshimoto, R.; Hirose, T.; Inoue, K.; Mayeda, A.

10.1101/784868 — molecular biology — Posted on 2019-09-27

311 Single-cell genomics of uncultured bacteria reveals dietary fiber responders in the mouse gut microbiota

Chijiiwa, R.; Hosokawa, M.; Kogawa, M.; Nishikawa, Y.; Ide, K.; Sakanashi, C.; Takahashi, K.; Takeyama, H.

10.1101/784801 — microbiology — Posted on 2019-09-27

312 Long-read Data Revealed Structural Diversity in Human Centromere Sequences

Suzuki, Y.; Myers, G.; Morishita, S.

10.1101/784785 — genomics — Posted on 2019-09-27

313 The Brazilian Amazon Protected Area Network was largely unaffected by recent fires

Bebber, D. P.

10.1101/784975 — ecology — Posted on 2019-09-27

314 Benthic jellyfish dominate water mixing in mangrove ecosystems

Durieux, D. M.; Gemmell, B.; Du Clos, K.

10.1101/784173 — ecology — Posted on 2019-09-27

315 Distances walked by beach users and protecting shorebird habitat from human recreation disturbance

Totterman, S.

10.1101/783696 — ecology — Posted on 2019-09-27

316 Exome sequencing of bulked segregants identified a novel TaMKK3-A allele linked to the wheat ERA8 ABA-hypersensitive germination phenotype

Martinez, S. A.; Shorinola, O.; Conselman, S.; See, D.; Skinner, D. Z.; Uauy, C.; Steber, C. M.

10.1101/784652 — genetics — Posted on 2019-09-27

317 Human gut microbiota networks disturbance by parasites in indigenous communities: Effect on bacteria genera related to depression incidence subnetworks

Ramirez-Carrillo, E.; Gaona, O.; Nieto, J.; Sanchez-Quinto, A.; Cerqueda-Garcia, D.; Falcon, L. I.; Rojas-Ramos, O.; Gonzalez-Santoyo, I.

10.1101/784470 — ecology — Posted on 2019-09-27

318 LRR-extensins of vegetative tissues are a functionally conserved family of RALF1 receptors interacting with the receptor kinase FERONIA

Herger, A.; Gupta, S.; Franck, C. M.; Kadler, G.; Boisson-Dernier, A.; Ringli, C.

10.1101/783266 — plant biology — Posted on 2019-09-27

319 OPETH: Open Source Solution for Real-time Peri-event Time Histogram Based on Open Ephys

Szell, A.; Martinez-Bellver, S.; Hegedus, P.; Hangya, B.

10.1101/783688 — neuroscience — Posted on 2019-09-27

320 Pseudomonas aeruginosa leucine aminopeptidase influences early biofilm composition and structure via vesicle-associated anti-biofilm activity

Esoda, C.; Kuehn, M.

10.1101/784918 — microbiology — Posted on 2019-09-27

321 Architectural RNA is required for heterochromatin organization

Thakur, J.; Fang, H.; Llagas, T.; Disteche, C. M.; Henikoff, S.

10.1101/784835 — genomics — Posted on 2019-09-27

322 The APL1 immune factor is encoded by a single ancestral gene in most Anopheles species and expanded to three paralogs with distinct function in the Anopheles gambiae complex

Mitri, C.; Bischoff, E.; Eiglmeier, K.; Holm, I.; Dieme, C.; Brito-Fravallo, E.; Raz, A.; Zakeri, S.; Nejad, M. I. K.; Djadid, N. D.; Vernick, K. D.; Riehle, M. M.

10.1101/785089 — genetics — Posted on 2019-09-27

323 Safeguarding the genetic integrity of native pollinators requires stronger regulations on commercial lines

Bartomeus, I.; Molina, F. P.; Hidalgo-Galiana, A.; Ortego, J.

10.1101/783878 — ecology — Posted on 2019-09-27

324 Analysis of spatiotemporal specificity of small RNAs regulating hPSC differentiation and beyond

Li, L.; Li, J. F.; Cao, D. D.; Papadopoulos, V.; Chan, W. Y.

10.1101/784819 — bioinformatics — Posted on 2019-09-27

325 A Measure of Whole-Brain White Matter Topography

Wang, J.; Shi, Y.

10.1101/783274 — neuroscience — Posted on 2019-09-27

326 Goal-directed action transiently depends on action space

Balleine, B. W.; Bradfield, L. A.; Boldt, S.; Leung, B. K.

10.1101/783308 — animal behavior and cognition — Posted on 2019-09-27

327 Genetic interactions derived from high-throughput phenotyping of 7,350 yeast cell cycle mutants

Gallegos, J. E.; Adames, N. R.; Rogers, M. F.; Kraikivski, P.; Ibele, A.; Nurzynski-Loth, K.; Kudlow, E.; Murali, T. M.; Tyson, J.; Peccoud, J.

10.1101/785840 — systems biology — Posted on 2019-09-27

328 High photon count rate super-resolution fluorescence fluctuation spectroscopy

Schneider, F.; Hernandez-Varas, P.; Lagerholm, B. C.; Shrestha, D.; Sezgin, E.; Roberti, J.; Ossato, G.; Hecht, F.; Eggeling, C.; Urbancic, I.

10.1101/783639 — biophysics — Posted on 2019-09-27

329 Multiscale mechanical model for cell division orientation in developing biological systems

Leggio, B.; Laussu, J.; Faure, E.; Lemaire, P.; Godin, C.

10.1101/785337 — biophysics — Posted on 2019-09-27

330 A PUF hub drives self-renewal in C. elegans germline stem cells

Haupt, K. A.; Law, K. T.; Enright, A. L.; Kanzler, C. R.; Shin, H.; Wickens, M.; Kimble, J.

10.1101/785923 — developmental biology — Posted on 2019-09-27

331 Myt1 kinase promotes mitotic cell cycle exit in Drosophila intestinal progenitor cells

Willms, R. J.; Zeng, J.; Campbell, S. D.

10.1101/785949 — developmental biology — Posted on 2019-09-27

332 The RNA helicase DDX3 induces neural crest by promoting AKT activity

Perfetto, M.; Xu, X.; Yousaf, N.; Li, J.; Wei, S.

10.1101/785428 — developmental biology — Posted on 2019-09-27

333 How to define and optimize axial resolution in light-sheet microscopy: a simulation-based approach

Remacha, E.; Friedrich, L.; Vermot, J.; Fahrbach, F. O.

10.1101/783589 — biophysics — Posted on 2019-09-27

334 Regulation of BMP Signaling by O-GlcNAcylation

Moulton, M. J.; Humphreys, G. B.; Kim, A.; Letsou, A.

10.1101/784629 — developmental biology — Posted on 2019-09-27

335 Crystal structure of human PACRG in complex with MEIG1

Khan, N.; Pelletier, D.; Veyron, S.; Croteau, N.; Ichikawa, M.; Black, C.; Khalifa, A. A. Z.; Chaaban, S.; Kurinov, I.; Brouhard, G.; Bui, K. H.; Trempe, J.-F.

10.1101/783373 — cell biology — Posted on 2019-09-27

336 Prominin-1-Radixin Axis controls hepatic gluconeogenesis by regulating PKA activity

Lee, H.; Yu, D.-M.; Park, J.-S.; Lee, H.; Kim, J.-S.; Koo, S.-H.; Lee, J.-S.; Lee, S.; Ko, Y.-G.

10.1101/785154 — cell biology — Posted on 2019-09-27

337 A hybrid stochastic-deterministic mechanochemical model of cell polarization

Copos, C.; Mogilner, A.

10.1101/785709 — biophysics — Posted on 2019-09-27

338 Machine learning guided association of adverse drug reactions with in vitro target-based pharmacology

Ietswaart, R.; Arat, S.; Chen, A. X.; Farahmand, S.; Kim, B.; DuMouchel, W.; Armstrong, D.; Fekete, A.; Sutherland, J. J.; Urban, L.

10.1101/750950 — pharmacology and toxicology — Posted on 2019-09-27

339 TAK1 Regulates Endothelial Integrity Through Stabilization of Junctions via GSK3β and FoxO1

Regmi, S. C.; Soni, D.; Wang, D.-M.; Vogel, S. M.; Malik, A. B.; Tiruppathi, C.

10.1101/785907 — cell biology — Posted on 2019-09-27

340 Identification of four unconventional kinetoplastid kinetochore proteins KKT22-25 in Trypanosoma brucei

Nerusheva, O. O.; Ludzia, P.; Akiyoshi, B.

10.1101/785170 — cell biology — Posted on 2019-09-27

341 Defined extracellular ionic solutions to study and manipulate the cellular resting membrane potential

Bonzanni, M.; Payne, S. L.; Adelfio, M.; Kaplan, D.; Levin, M.; Oudin, M. J.

10.1101/785444 — cell biology — Posted on 2019-09-27

342 A T cell behavioral manifold couples speed and turning to create heterogeneity in vivo

Jerison, E. R.; Quake, S. R.

10.1101/785964 — biophysics — Posted on 2019-09-27

343 Electrostatics and Solvation: Essential Determinants of Chromatin Compaction

Bendandi, A.; Dante, S.; Zia, S. R.; Diaspro, A.; Rocchia, W.

10.1101/785634 — biophysics — Posted on 2019-09-27

344 Pre-stress and cortical stiffness affect fluidity of living cells

Cordes, A. M.; Witt, H.; Gallemi-Perez, A.; Brueckner, B. R.; Grimm, F.; Tarantola, M.; Janshoff, A.

10.1101/783613 — biophysics — Posted on 2019-09-27

345 Dynamic reconfiguration, fragmentation and integration of whole-brain modular structure across depths of unconsciousness

Standage, D.; Areshenkoff, C. N.; Nashed, J. Y.; Hutchison, R. M.; Hutchison, M.; Heinke, D.; Menon, R. S.; Everling, S.; Gallivan, J. P.

10.1101/783175 — neuroscience — Posted on 2019-09-27

346 Improved read/write cost tradeoff in DNA-based data storage using LDPC codes

Chandak, S.; Tatwawadi, K.; Lau, B.; Mardia, J.; Kubit, M.; Neu, J.; Griffin, P.; Wootters, M.; Weissman, T.; Ji, H.

10.1101/770032 — bioengineering — Posted on 2019-09-27

347 A functional cortical network for sensorimotor sequence generation

Xu, D.; Chen, Y.; Delgado, A. M.; Hughes, N. C.; Zhang, L.; Dong, M.; O'Connor, D. H.

10.1101/783050 — neuroscience — Posted on 2019-09-27

348 Convergent neural representations of acute nociceptive pain in healthy volunteers: A large-scale fMRI meta-analysis

Xu, A.; Larsen, B.; Baller, E. B.; Scott, J. C.; Sharma, V.; Adebimpe, A.; Basbaum, A.; Dworkin, R. H.; Edwards, R. R.; Woolf, C. J.; Eickhoff, S.; Eickhoff, C. R.; Satterthwaite, T. D.

10.1101/779280 — neuroscience — Posted on 2019-09-27

349 Brain-to-brain synchrony between students and teachers predicts learning outcomes

Davidesco, I.; Laurent, E.; Valk, H.; West, T.; Dikker, S.; Milne, C.; Poeppel, D.

10.1101/644047 — neuroscience — Posted on 2019-09-27

350 Cortical RORβ is required for layer 4 transcriptional identity and barrel integrity.

Clark, E. A.; Rutlin, M.; Capano, L.; Aviles, S.; Saadon, J. R.; Taneja, P.; Zhang, Q.; Bullis, J.; Lauer, T.; Myers, E.; Schulmann, A.; Forrest, D.; Nelson, S. B.

10.1101/782995 — neuroscience — Posted on 2019-09-27

351 Glutamatergic and GABAergic neuronal populations in thedorsolateral Periacqueductual Gray have differentfunctional roles in fear conditioning

Montardy, Q.; Zhou, Z.; Liu, X.; Lei, Z.; Zeng, P.; Chen, C.; Liu, Y.; Huang, K.; Wei, M.; Wang, L.

10.1101/781187 — neuroscience — Posted on 2019-09-27

352 Auditory brainstem models: KV1 ion-channels and depleting end-bulb synapses improve spatial encoding in reverberation

Brughera, A.; Mikiel-Hunter, J.; Dietz, M.; McAlpine, D.

10.1101/694356 — neuroscience — Posted on 2019-09-27

353 Spontaneously emerging cortical representations of visual objects and features in human visual cortex

Kim, D.; Livne, T.; Metcalf, N.; Corbetta, M.; Shulman, G. L.

10.1101/518712 — neuroscience — Posted on 2019-09-27

354 Learning improves decoding of odor identity with phase-referenced oscillations in the olfactory bulb

Losacco, J.; Ramirez-Gordillo, D.; Gilmer, J.; Restrepo, D.

10.1101/758813 — neuroscience — Posted on 2019-09-27

355 A large-scale chemical-genetic strategy to design antimicrobial combination chemotherapy for Mycobacterium tuberculosis

Johnson, E. O.; Office, E.; Kawate, T.; Orzechowski, M.; Hung, D. T.

10.1101/772459 — microbiology — Posted on 2019-09-27

356 An integrated approach unravels a crucial structural property for the function of the insect steroidogenic Halloween protein Noppera-bo

Koiwai, K.; Inaba, K.; Morohashi, K.; Enya, S.; Arai, R.; Kojima, H.; Okabe, T.; Fujikawa, Y.; Inoue, H.; Yoshino, R.; Hirokawa, T.; Kato, K.; Fukuzawa, K.; Shimada-Niwa, Y.; Nakamura, A.; Yumoto, F.; Senda, T.; Niwa, R.

10.1101/781070 — biochemistry — Posted on 2019-09-27

357 GWAS-Flow: A GPU accelerated framework for efficient permutation based genome-wide association studies

Freudenthal, J. A.; Ankenbrand, M. J.; Grimm, D. G.; Korte, A.

10.1101/783100 — bioinformatics — Posted on 2019-09-27

358 Zinc can counteract selection for ciprofloxacin resistance

Vos, M.; Sibleyras, L.; Lo, L. K.; Hesse, E.; Gaze, W. H.; Klümper, U.

10.1101/780981 — microbiology — Posted on 2019-09-27

359 Modeling binary and graded cone cell fate patterning in the mouse retina

Eldred, K. C.; Avelis, C. M.; Johnston, R. J.; Roberts, E.

10.1101/650606 — developmental biology — Posted on 2019-09-27

360 Data-driven classification of spectral profiles reveals brain region-specific plasticity

Lubinus, C.; Gudi-Mindermann, H.; Keitel, A.; Engel, A. K.; Roeder, B.; Rimmele, J. M.

10.1101/782979 — neuroscience — Posted on 2019-09-27

361 Panmixia across elevation in thermally sensitive Andean dung beetles

Linck, E. B.; Sheldon, K. S.; Celi, J. E.

10.1101/783233 — ecology — Posted on 2019-09-27

362 Functional Analysis of the UV-B Photoreceptor Gene ZmUVR8 (UVR8 Response locus), from Zea Mays.

Fernandez, M. B.; Lamattina, L.; Cassia, R.

10.1101/649905 — plant biology — Posted on 2019-09-27

363 The type IV pilin PilA couples surface attachment and cell cycle initiation in Caulobacter crescentus

Del Medico, L.; Cerletti, D.; Christen, M.; Christen, B.

10.1101/766329 — microbiology — Posted on 2019-09-27

364 Lateral pressure equalisation as a principle for designing support surfaces to prevent deep tissue pressure ulcers

Boyle, C. J.; Carpanen, D.; Pandelani, T.; Higgins, C. A.; Masen, M. A.; Masouros, S. D.

10.1101/592477 — bioengineering — Posted on 2019-09-27

365 High functional diversity among Nitrospira populations that dominate rotating biological contactor biofilm communities in a municipal wastewater treatment plant

Spasov, E.; Tsuji, J. M.; Hug, L. A.; Doxey, A. C.; Sauder, L. A.; Parker, W. J.; Neufeld, J. D.

10.1101/529826 — microbiology — Posted on 2019-09-27

366 The natverse: a versatile computational toolbox to combine and analyse neuroanatomical data

Manton, J. D.; Bates, A. S.; Jagannathan, S. R.; Costa, M.; Schlegel, P.; Rohlfing, T.; Jefferis, G. S. X. E.

10.1101/006353 — neuroscience — Posted on 2019-09-27

367 Monotherapy efficacy of BBB-permeable small molecule activators of PP2A in glioblastoma

Merisaari, J.; Denisova, O. V.; Doroszko, M.; Le Joncour, V.; Johansson, P.; Leenders, W. P. J.; Kastrinsky, D. B.; Nilesh, Z.; Narla, G.; Laakkonen, P.; Nelander, S.; Ohlmeyer, M.; Westermarck, J.

10.1101/777276 — cancer biology — Posted on 2019-09-27

368 The burden of deleterious variants in a non-human primate biomedical model

Ramensky, V.; Jasinska, A.; Deverasetty, S.; Svardal, H.; Zelaya, I.; Jorgensen, M. J.; Kaplan, J. R.; Cline, M. J.; Zharikova, A.; Service, S. K.; Wilson, R. K.; Coppola, G.; Freimer, N. B.; Warren, W. C.

10.1101/784132 — genetics — Posted on 2019-09-27

369 Inherited Causes of Clonal Hematopoiesis of Indeterminate Potential in TOPMed Whole Genomes

Bick, A. G.; Weinstock, J.; Nandakumar, S. K.; Fulco, C. P.; Leventhal, M. J.; Bao, E. L.; Nasser, J.; Zekavat, S. M.; Szeto, M. D.; Laurie, C.; Taub, M.; Mitchell, B.; Barnes, K.; Moscati, A.; Fornage, M.; Redline, S.; Psaty, B. M.; Silverman, E.; Weiss, S.; Palmer, N.; Ramachandran, V.; Burchard, E.; Kardia, S.; He, J.; Kaplan, R.; Smith, N. L.; Arnett, D.; Schwartz, D.; Correa, A.; de Andrade, M.; Guo, X.; Konkle, B. A.; Custer, B.; Peralta, J.; Gui, H.; Meyers, D.; McGarvey, S. T.; Chen, I.; Shoemaker, M. B.; Peyser, P. A.; Broome, J.; Gogarten, S.; Wang, F. F.; Wong, Q.; Montasser, M.; Da

10.1101/782748 — genomics — Posted on 2019-09-27

370 Software as a Service for the Genomic Prediction of Complex Diseases.

Bolli, A.; Di Domenico, P.; Botta, G.

10.1101/763722 — genomics — Posted on 2019-09-27

371 Establishment and characterization of a cell line and patient-derived xenograft (PDX) from peritoneal metastasis of low-grade serous ovarian carcinoma

De Thaye, E.; Van de Vijver, K.; Van der Meulen, J.; Taminau, J.; Wagemans, G.; Denys, H.; Van Dorpe, J.; Berx, G.; Ceelen, W.; Van Bocxlaer, J.; De Wever, O.

10.1101/784959 — cancer biology — Posted on 2019-09-27

372 CIViCpy: a Python software development and analysis toolkit for the CIViC knowledgebase

Wagner, A. H.; Kiwala, S.; Coffman, A. C.; McMichael, J. F.; Cotto, K. C.; Mooney, T. B.; Barnell, E. K.; Krysiak, K.; Danos, A.; Griffith, O. L.; Griffith, M.

10.1101/783134 — bioinformatics — Posted on 2019-09-27

373 Single-cell analyses identify tobacco smoke exposure-associated, dysfunctional CD16+ CD8 T cells with high cytolytic potential in peripheral blood

Martos, S. N.; Campbell, M. R.; Lozoya, O. A.; Bennett, B. D.; Thompson, I. J. B.; Wan, M.; Pittman, G. S.; Bell, D. A.

10.1101/783126 — immunology — Posted on 2019-09-27

374 Cerebral Dopamine Neurotrophic Factor regulates multiple neuronal subtypes and social behavior

Chen, Y.-C.; Baronio, D.; Semenova, S.; Abdurakhmanova, S.; Panula, P.

10.1101/733949 — neuroscience — Posted on 2019-09-27

375 Comprehensive ecosystem-specific 16S rRNA gene databases with automated taxonomy assignment (AutoTax) provide species-level resolution in microbial ecology

Dueholm, M. S.; Skytte Andersen, K. S.; Petriglieri, F.; McIlroy, S. J. J.; Nierychlo, M.; Petersen, J. F.; Kristensen, J. M.; Yashiro, E.; Karst, S. M. M.; Albertsen, M.; Nielsen, P. H.

10.1101/672873 — microbiology — Posted on 2019-09-27

376 Impact of mutation rate and selection at linked sites on DNA variation across the genomes of humans and other homininae

Castellano, D.; Eyre-Walker, A.; Munch, K.

10.1101/452201 — evolutionary biology — Posted on 2019-09-27

377 Reclassification of Pterulaceae Corner (Basidiomycota: Agaricales) introducing the ant-associated genus Myrmecopterula gen. nov., Phaeopterula Henn. and the corticioid Radulomycetaceae fam. nov.

Leal-Dutra, C. A.; griffith, g. w.; Neves, M. A.; McLaughlin, D. J.; McLaughlin, E. G.; Clasen, L. A.; Dentinger, B. T. M.

10.1101/718809 — microbiology — Posted on 2019-09-27

378 Spatial structure arising from chase-escape interactions with crowding

Surendran, A.; Plank, M.; Simpson, M.

10.1101/470799 — biophysics — Posted on 2019-09-27

379 MapCaller - An integrated and efficient tool for short-read mapping and variant calling using high-throughput sequenced data

Lin, H.-N.; Hsu, W.-L.

10.1101/783605 — bioinformatics — Posted on 2019-09-27

380 Auditory brainstem models: KV1 ion-channels and depleting end-bulb synapses improve spatial encoding in reverberation

Brughera, A.; Mikiel-Hunter, J.; Dietz, M.; McAlpine, D.

10.1101/694356 — neuroscience — Posted on 2019-09-27

381 Heterozygous ATP-binding Cassette Transporter G5 Gene Deficiency and Risk of Coronary Artery Disease

Nomura, A.; Emdin, C. A.; Won, H.-H.; Peloso, G. M.; Natarajan, P.; Ardissino, D.; Danesh, J.; Schunkert, H.; Correa, A.; Bown, M. J.; Samani, N. J.; Erdmann, J.; McPherson, R.; Watkins, H.; Saleheen, D.; Elosua, R.; Kawashiri, M.-a.; Tada, H.; Gupta, N.; Shah, S. H.; Rader, D. J.; Gabriel, S.; Khera, A. V.; Kathiresan, S.

10.1101/780734 — genetics — Posted on 2019-09-27

382 Custom built scanner and simple image processing pipeline enables low-cost, high-throughput phenotyping of maize ears

Warman, C.; Fowler, J. E.

10.1101/780650 — plant biology — Posted on 2019-09-27

383 De novo transcriptome assembly of the African bullfrog Pyxicephalus adspersus for molecular analysis of aestivation

Yoshida, N.; Kaito, C.

10.1101/588889 — molecular biology — Posted on 2019-09-27

384 Remote Activation of a Latent Epitope in an Autoantigen Decoded with Simulated B-Factors

Pang, Y.-P.; Casal Moura, M.; Thompson, G. E.; Nelson, D. R.; Hummel, A. M.; Jenne, D. E.; Emerling, D.; Volkmuth, W.; Robinson, W. H.; Specks, U.

10.1101/559963 — biophysics — Posted on 2019-09-27

385 In vivo glucoregulation and tissue-specific glucose uptake in female Akt substrate 160 kDa knockout rats

ZHENG, X.; Arias, E.; Qi, N.; Saunders, T.; Cartee, G. D.

10.1101/777284 — physiology — Posted on 2019-09-26

386 Age-dependent neuroprotective effect of an SK3. channel agonist on excitotoxityto dopaminergic neurons in organotypic culture

Maldonado, O.; Jenkins, A.; Belalcazar, H. M.; Hernandez-Cuervo, H.; Ladaga, G.; Padilla, L.; de Erausquin, G. A.

10.1101/784009 — neuroscience — Posted on 2019-09-26

387 RpiRc regulates RsbU to modulate eDNA-dependent biofilm formation and in vivo virulence of Staphylococcus aureus in a mouse model of catheter infection

Fischer, a.; Girard, M.; Laumay, F.; Woischnig, A.-K.; Khanna, N.; Francois, P.; Schrenzel, J.

10.1101/783985 — microbiology — Posted on 2019-09-26

388 Microbiomes in the insectivorous bat species Mops condylurus rapidly converge in captivity

Edenborough, K. M.; Mu, A.; Muehldorfer, K.; Lechner, J.; Lander, A.; Bokelmann, M.; Couacy-Hymann, E.; Radonic, A.; Kurth, A.

10.1101/784074 — microbiology — Posted on 2019-09-26

389 A single nucleotide polymorphism in the HOMER1 gene is associated with sleep latency and theta power in sleep electroencephalogram

Pedrazzoli, M.; Mazzotti, D. R.; Ribeiro, A. O.; Mendes, J. V.; Bittencourt, L. R. A.; Tufik, S.

10.1101/784058 — genetics — Posted on 2019-09-26

390 Effects of active dry yeast on growth performance, rumen fermentation characteristics and slaughter performance in beef cattle

Liu, S.; Yuan, M.; Kang, K.; Wang, Z.; Wang, L.; Xue, B.; Tian, G.; Zou, H.; Shah, A. M.; Zhang, X.; Yu, P.; Wang, H.; Peng, Q.

10.1101/784082 — zoology — Posted on 2019-09-26

391 Bacteriological Monitoring and Evaluation of Cleaning-disinfection of Computer-related Equipment in an Obstetric and Gynecology Hospital

Li, M.; Lu, T.; Zhang, H.; Chen, S.; Mao, X.; Shen, L.; Lu, Y.; Leng, S.

10.1101/784017 — scientific communication and education — Posted on 2019-09-26

392 Humans adapt their anticipatory eye movements to the volatility of visual motion properties

Pasturel, C.; Montagnini, A.; Perrinet, L. U.

10.1101/784116 — neuroscience — Posted on 2019-09-26

393 Loss of Bacterial Cell Pole Stabilization in Caulobacter crescentus Sensitizes to Outer Membrane Stress and Peptidoglycan-Directed Antibiotics

Vallet, S.-U.; Hansen, L. H.; Bistrup, F. C.; Chapalay, J. B.; Chambon, M.; Turcatti, G.; Viollier, P. H.; Kirkpatrick, C. L.

10.1101/784066 — microbiology — Posted on 2019-09-26

394 A model of Zebrafish Avatar for co-clinical trials

Usai, A.; Di Franco, G.; Colucci, P.; Pollina, L. E.; Vasile, E.; Funel, N.; Palmeri, M.; Dente, L.; Falcone, A.; Morelli, L.; Raffa, V.

10.1101/784041 — cancer biology — Posted on 2019-09-26

395 Spleen Transcriptome Analysis of C57BL/6 Mouse in Response to Hot Water Extract from Spent Mushroom Substrate of Ganoderma lucidum and Cyclophosphamide

Wang, Z.; Wang, A.; Li, J.; Liao, Z.; Sun, L.; Lin, Z.; Liu, Y.

10.1101/784108 — bioinformatics — Posted on 2019-09-26

396 Interspecies transcriptome analyses identify genes that control the development and evolution of limb skeletal proportion

Saxena, A.; Sharma, V.; Neufeld, S. J.; Tran, M. P.; Gutierrez, H. L.; Erberich, J. M.; Birmingham, A.; Cobb, J.; Hiller, M.; Cooper, K. L.

10.1101/754002 — developmental biology — Posted on 2019-09-26

397 In-vivo crystals reveal protein interactions

Martin, E. R.; Barbieri, A.; Ford, R. C.; Robinson, R. C.

10.1101/778779 — biochemistry — Posted on 2019-09-26

398 DRD2 TaqI A polymorphism in Eastern Uttar Pradesh population

Chaudhary, A.; Yadav, U.; Kumar, P.; Rai, V.

10.1101/783514 — neuroscience — Posted on 2019-09-26

399 Inter- and intra-animal variation of integrative properties of stellate cells in the medial entorhinal cortex

Pastoll, H.; Garden, D.; Papastathopoulos, I.; Surmeli, G.; Nolan, M.

10.1101/678565 — neuroscience — Posted on 2019-09-26

400 Relationship between early body condition, energetic reserves and fitness in an iteroparous insect

Zanchi, C.; Moret, Y.; Gillingham, M.

10.1101/774893 — ecology — Posted on 2019-09-26

401 Molecular patterning during the development of Phoronopsis harmeri reveals similarities to rhynchonelliform brachiopods

Andrikou, C.; Passamaneck, Y.; Lowe, C. J.; Martindale, M. Q.; Hejnol, A.

10.1101/782839 — developmental biology — Posted on 2019-09-26

402 Digitalizing heterologous gene expression in Gram-negative bacteria with a portable on/off module

Calles, B.; Goni-Moreno, A.; de Lorenzo, V.

10.1101/783506 — synthetic biology — Posted on 2019-09-26

403 KV1.2 channels inactivate through a mechanism similar to C-type inactivation

Suarez-Delgado, E.; Rangel-Sandin, T. G.; Ishida, I. G.; Rangel-Yescas, G. E.; Rosenbaum, T.; Islas, L. D.

10.1101/784249 — biophysics — Posted on 2019-09-26

404 Effect of interictal epileptiform discharges on EEG-based functional connectivity networks

Hu, D. K.; Shrey, D. W.; Lopour, B. A.

10.1101/784298 — neuroscience — Posted on 2019-09-26

405 Immunization of mice with chimeric antigens displaying selected epitopes confers protection against intestinal colonization and renal damage caused by Shiga toxin-producing Escherichia coli (STEC).

Montero, D. A.; Del Canto, F.; Salazar, J. C.; Cespedes, S.; Cadiz, L.; Arenas-Salinas, M.; Reyes, J.; Onate, A.; Vidal, R. M.

10.1101/783829 — microbiology — Posted on 2019-09-26

406 Heterozygous ATP-binding Cassette Transporter G5 Gene Deficiency and Risk of Coronary Artery Disease

10.1101/780734 — genetics — Posted on 2019-09-26

407 Human Rotavirus Diarrhea Is Associated with Altered Trafficking and Expression of Apical Membrane Transport Proteins

Zachos, N. C.; Baetz, N. W.; Gupta, A.; Kapoor, A.; Cole, R. N.; Verkman, A. S.; Turner, J. R.; Estes, M. K.; Donowitz, M.

10.1101/784264 — cell biology — Posted on 2019-09-26

408 Differential stromal reprogramming in benign and malignant naturally occurring canine mammary tumours identifies disease-promoting stromal components

Amini, P.; Nassiri, S.; Malbon, A.; Markkanen, E.

10.1101/783621 — cancer biology — Posted on 2019-09-26

409 Chronic circadian disruption modulates breast cancer cell stemness and their immune microenvironment to drive metastasis in mice

Hadadi, E.; Taylor, W.; Li, X.; Aslan, Y.; Vilotte, M.; Riviere, J.; Duvallet, G.; Auriau, C.; Dulong, S.; Raymond Letron, I.; Provot, S.; Bennaceur-Griscelli, A.; Acloque, H.

10.1101/777433 — cancer biology — Posted on 2019-09-26

410 Lens Transmittance Shapes UV Sensitivity In The Eyes Of Frogs From Diverse Ecological And Phylogenetic Backgrounds

Yovanovich, C. A.; Pierotti, M. E.; Kelber, A.; Jorgewich-Cohen, G.; Ibanez, R.; Grant, T.

10.1101/783811 — neuroscience — Posted on 2019-09-26

Riva, F.; Lenger, M.; Kronbichler, M.; Lamm, C.; Silani, G.

10.1101/784215 — neuroscience — Posted on 2019-09-26

412 Persistent transcriptional programs are associated with remote memory in diverse cells of the medial prefrontal cortex

Chen, M. B.; Jiang, X.; Quake, S. R.; Sudhof, T. C.

10.1101/784413 — neuroscience — Posted on 2019-09-26

413 Cachexia and fibrosis are costs of chronic IL-1R-mediated disease tolerance in T. gondii infection

Ewald, S. E.; Melchor, S. J.; Hatter, J. A.; LaTorre Castillo, E. A.; Saunders, C. M.; Byrnes, K. A.; Sanders, I.; Abebayehu, D.; Barker, T.; Countermarsh-Ott, S.

10.1101/783316 — immunology — Posted on 2019-09-26

414 Systematic profiling of full-length immunoglobulin and T-cell receptor repertoire diversity in rhesus macaque through long read transcriptome sequencing

Brochu, H.; Tseng, E.; Smith, E.; Thomas, M. J.; Jones, A.; Diveley, K.; Law, L.; Hansen, S. G.; Picker, L.; Gale, M.; Peng, X.

10.1101/782938 — immunology — Posted on 2019-09-26

415 Two parallel arms of the heterochronic pathway direct coordinated juvenile-to-adult transition through distinct LIN-29 isoforms

Azzi, C.; Aeschimann, F.; Neagu, A.; Grosshans, H.

10.1101/783001 — developmental biology — Posted on 2019-09-26

416 Pathway engineering in yeast for synthesizing the complex polyketide bikaverin

Zhao, M.; Zhao, Y.; Hu, Q.; Iqbal, H.; Yao, M.; Liu, H.; Qiao, B.; Li, C.; Skovbjerg, C. A. S.; Nielsen, J. C.; Nielsen, J. B.; Frandsen, R. J. N.; Yuan, Y.; Boeke, J. D.

10.1101/783365 — synthetic biology — Posted on 2019-09-26

417 Muscle strength, size and composition following 12 months of gender-affirming treatment in transgender individuals: retained advantage for the transwomen

Wiik, A.; Lundberg, T. R.; Rullman, E.; Andersson, D. P.; Holmberg, M.; Mandic, M.; Brismar, T. B.; Dahlqvist Leinhard, O.; Chanpen, S.; Flanagan, J.; Arver, S.; Gustafsson, T.

10.1101/782557 — physiology — Posted on 2019-09-26

418 Reduced Kv3.1 Activity in Dentate Gyrus Parvalbumin Cells Induces Vulnerability to Depression.

Medrihan, L.; Umschweif, G.; Sinha, A.; Reed, S.; Gindinova, K.; Sinha, S. C.; Greengard, P.; Sagi, Y.

10.1101/784090 — neuroscience — Posted on 2019-09-26

419 Interhemispheric gamma synchrony between parvalbumin interneurons supports behavioral adaptation

Cho, K. K. A.; Davidson, T. J.; Marshall, J. D.; Schnitzer, M. J.; Sohal, V. S.

10.1101/784330 — neuroscience — Posted on 2019-09-26

420 Say what I mean - Expectancy effects in the EEG during joint and spontaneous word-by-word sentence production

Goregliad Fjaellingsdal, T.; Schwenke, D.; Scherbaum, S.; Kuhlen, A. K.; Boegels, S.; Meekes, J.; Bleichner, M. G.

10.1101/782581 — neuroscience — Posted on 2019-09-26

421 Detection of anomalous high frequency events in human intracranial EEG

Charupanit, K.; Sen-Gupta, I.; Lin, J. J.; Lopour, B. A.

10.1101/782912 — neuroscience — Posted on 2019-09-26

422 A quiescent state following mild sensory arousal in Caenorhabditis elegans is potentiated by stress

McClanahan, P. D.; Dubuque, J. M.; Kontogiorgos-Heintz, D.; Habermeyer, B. F.; Xu, J.; Ma, A.; Raizen, D. M.; Fang-Yen, C.

10.1101/784306 — neuroscience — Posted on 2019-09-26

423 The Readiness Potential reflects internal source of actions, not decision uncertainty

Travers, E.; Haggard, P.

10.1101/782813 — neuroscience — Posted on 2019-09-26

424 The Effects of Sex and Strain on Pneumocystis murina Fungal Burdens in Mice

Tisdale, N.; Ashbauad, A.; Hendricks, K.; Collins, M.; Porollo, A.; Cushion, M. T.

10.1101/781245 — microbiology — Posted on 2019-09-26

425 Rv3722c governs aspartate-dependent nitrogen metabolism in Mycobacterium tuberculosis

Jansen, R. S.; Mandyoli, L.; Hughes, R.; Wakabayashi, S.; Pinkham, J.; Selbach, B.; Guinn, K.; Rubin, E. J.; Sacchettini, J. C.; Rhee, K.

10.1101/784462 — microbiology — Posted on 2019-09-26

426 Clickable methionine as a universal probe for labelling intracellular bacteria

Atwal, S.; Giengkam, S.; Jaiyen, Y.; Feaga, h.; Dworkin, J.; Salje, J.

10.1101/784371 — microbiology — Posted on 2019-09-26

427 Quantitative Genomic Dissection of Soybean Yield Components

Rainey, K. M.; Xavier, A.

10.1101/784538 — genetics — Posted on 2019-09-26

428 In silico analysis of long non-coding RNAs in medulloblastoma and its subgroups

Joshi, P.; Perera, R. J.

10.1101/783092 — cancer biology — Posted on 2019-09-26

429 SRSF2 regulation of MDM2 reveals splicing as a therapeutic vulnerability of the p53 pathway

Comiskey, D. F.; Montes, M.; Khurshid, S.; Singh, R. K.; Chandler, D. S.

10.1101/784256 — cancer biology — Posted on 2019-09-26

430 Removing reference bias in ancient DNA data analysis by mapping to a sequence variation graph

Martiniano, R.; Garrison, E.; Jones, E. R.; Manica, A.; Durbin, R.

10.1101/782755 — genomics — Posted on 2019-09-26

431 Acute toxicity of the plant volatile indole depends on herbivore specialization

Maurya, A. K.; Patel, R. C.; Frost, C. J.

10.1101/784165 — plant biology — Posted on 2019-09-26

432 A dynamic pattern of local auxin sources is required for root regeneration

Matosevich, R.; Cohen, I.; Gil-Yarom, N.; Modrego, A.; Verna, C.; Scarpella, E.; Efroni, I.

10.1101/783480 — plant biology — Posted on 2019-09-26

433 Bitter taste receptors stimulate phagocytosis in human macrophages through calcium, nitric oxide, and cyclic-GMP signaling

Gopallawa, I.; Freund, J. R.; Lee, R. J.

10.1101/776344 — physiology — Posted on 2019-09-26

434 Recombinant human soluble thrombomodulin is associated with attenuation of sepsis-induced renal impairment by inhibition of extracellular histone release

Akatsuka, M.; Masuda, Y.; Tatsumi, H.; Yamakage, M.

10.1101/780403 — pharmacology and toxicology — Posted on 2019-09-26

435 Temporal discounting correlates with directed exploration but not with random exploration

Sadeghiyeh, H.; Wang, S.; Alberhasky, M. R.; Kyllo, H. M.; Shenhav, A.; Wilson, R. C.

10.1101/783498 — neuroscience — Posted on 2019-09-26

436 Neurodevelopmental wiring deficits in the Ts65Dn mouse model of Down syndrome

Jain, S.; Watts, C.; Chung, W.; Welshhans, K.

10.1101/784314 — neuroscience — Posted on 2019-09-26

437 Structural rearrangements drive extensive genome divergence between symbiotic and free-living Symbiodinium

Gonzalez-Pech, R. A.; Stephens, T. G.; Chen, Y.; Mohamed, A. R.; Cheng, Y.; Burt, D. W.; Bhattacharya, D.; Ragan, M. A.; Chan, C. X.

10.1101/783902 — genomics — Posted on 2019-09-26

438 Evaluating the informativeness of deep learning annotations for human complex diseases

Dey, K. K.; van de Geijn, B. K.; Kim, S. S.; Hormozdiari, F.; Kelley, D. R.; Price, A.

10.1101/784439 — genetics — Posted on 2019-09-26

439 Rapid evolution at the telomere: transposable element dynamics at an intrinsically unstable locus

McGurk, M. P.; Dion-Cote, A.-M.; Barbash, D. A.

10.1101/782904 — genetics — Posted on 2019-09-26

440 A sheath of motile cells supports collective migration of the Zebrafish posterior lateral line primordium under the skin

Dalle Nogare, D.; Natesh, N.; Chitnis, A.

10.1101/783043 — cell biology — Posted on 2019-09-26

441 Cytosolic Ca2+ modulates Golgi structure through PKC-mediated GRASP55 phosphorylation

Ireland, S. C.; Ramnarayanan, S.; Fu, M.; Zhang, X.; Emebo, D.; Wang, Y.

10.1101/784520 — cell biology — Posted on 2019-09-26

442 Two-dimensional NMR lineshape analysis of single, multiple, zero and double quantum correlation experiments

Waudby, C. A.; Ouvry, M.; Davis, B.; Christodoulou, J.

10.1101/782631 — biophysics — Posted on 2019-09-26

443 Cytoskeletal organization in isolated plant cells under geometry control.

Durand-Smet, P.; Spelman, T.; Meyerowitz, E. M.; Jonsson, H.

10.1101/784595 — biophysics — Posted on 2019-09-26

444 Optimized Interferential Stimulation of Human Brains

Huang, Y.; Datta, A.; Parra, L. C.

10.1101/783423 — biophysics — Posted on 2019-09-26

445 MapCaller - An integrated and efficient tool for short-read mapping and variant calling using high-throughput sequenced data

Lin, H.-N.; Hsu, W.-L.

10.1101/783605 — bioinformatics — Posted on 2019-09-26

446 Double asymmetric percolation drives a quadruple transition in sexual contact networks

Zheng, H.; Zeng, X.

10.1101/784587 — bioinformatics — Posted on 2019-09-26

447 Identifying differences in bile acid pathways for cholesterol clearance in Alzheimer’s disease using metabolic networks of human brain regions

Baloni, P.; Funk, C. C.; Yan, J.; Yurkovich, J. T.; Kueider-Paisley, A.; Nho, K.; Heinken, A.; Jia, W.; Mahmoudiandehkordi, S.; Louie, G.; Saykin, A. J.; Arnold, M.; Kastenmueller, G.; Griffiths, W.; Thiele, I.; AMP-AD consortium, ; The Alzheimer's Disease Metabolomics Consortium, ; Kaddurah-Daouk, R.; Price, N. D.

10.1101/782987 — systems biology — Posted on 2019-09-26

448 High molecular weight DNA isolation method from diverse plant species for use with Oxford Nanopore sequencing

Vaillancourt, B.; Buell, C. R.

10.1101/783159 — plant biology — Posted on 2019-09-26

449 Chilling induces unidirectional solute leak through the locust gut epithelia

Brzezinski, K.; MacMillan, H.

10.1101/784504 — physiology — Posted on 2019-09-26

450 Intravital multi-modal flux analysis reveals the transport mechanism of bile acids through hepatic microconduits

Vartak, N.; Guenther, G.; Joly, F.; Damle-Vartak, A.; Wibbelt, G.; Fickel, J.; Jörs, S.; Begher-Tibbe, B.; Friebel, A.; Wansing, K.; Ghallab, A.; Rosselin, M.; Boissier, N.; Vignon-Clementel, I.; Hedberg, C.; Geisler, F.; Hofer, H.; Jansen, P.; Hoehme, S.; Drasdo, D.; Hengstler, J. G.

10.1101/778803 — physiology — Posted on 2019-09-26

451 New insights on the ventral attention network: Inhibition and recruitment during a bimodal task

Solis-Vivanco, R.; Jensen, O.; Bonnefond, M.

10.1101/782649 — neuroscience — Posted on 2019-09-26

452 P2X1 selective antagonists block HIV-1 infection through inhibition of envelope conformation-dependent fusion

Soare, A. Y.; Malik, H. S.; Durham, N.; Freeman, T. L.; Alvarez, R. A.; Patel, F.; Satija, N.; Upadhyay, C.; Hioe, C. E.; Chen, B. K.; Swartz, T. H.

10.1101/783464 — microbiology — Posted on 2019-09-26

453 Pick Your Poison: Benzalkonium Chloride and Copper Enable Nanocellulose Derivatives to Form Antimicrobial Properties Against a Spectrum of Microorganisms

Winans, M. J.; Gallagher, J. E. G.; Jaczynski, J.; Oporto, G.

10.1101/783076 — microbiology — Posted on 2019-09-26

454 Genotyping-by-sequencing illuminates high levels of divergence among sympatric forms of coregonines in the Laurentian Great Lakes

Ackiss, A. S.; Larson, W. A.; Stott, W.

10.1101/784355 — genomics — Posted on 2019-09-26

455 The burden of deleterious variants in a non-human primate biomedical model

10.1101/784132 — genetics — Posted on 2019-09-26

456 During environmental change, cooperation can promote rescue or lead to evolutionary suicide

Henriques, G. J. B.; Osmond, M. M.

10.1101/784553 — evolutionary biology — Posted on 2019-09-26

457 Drosophila Neuroblast Selection Gated by Notch, Snail, SoxB and EMT Gene Interplay

Arefin, B.; Thor, S.; Parvin, F.; Bahrampour, S.; Stadler, C. B.

10.1101/783241 — developmental biology — Posted on 2019-09-26

458 Hedgehog pathway activation through conformational blockade of the Patched sterol conduit

Zhang, Y.; Lu, W.-J.; Bulkley, D.; Liang, J.; Ralko, A.; Roberts, K. J.; Li, A.; Cho, W.; Cheng, Y.; Manglik, A.; Beachy, P.

10.1101/783290 — biophysics — Posted on 2019-09-26

459 Harmonization of large multi-site imaging datasets: Application to 10,232 MRIs for the analysis of imaging patterns of structural brain change throughout the lifespan

Pomponio, R.; Erus, G.; Habes, M.; Doshi, J.; Srinivasan, D.; Mamourian, E.; Bashyam, V.; Fan, Y.; Launer, L. J.; Masters, C. L.; Maruff, P.; Zhuo, C.; Nasrallah, I. M.; Völzke, H.; Johnson, S. C.; Fripp, J.; Koutsouleris, N.; Satterthwaite, T. D.; Wolf, D.; Gur, R.; Gur, R.; Morris, J.; Albert, M.; Grabe, H. J.; Resnick, S. M.; Bryan, R. N.; Wolk, D. A.; Shinohara, R. T.; Shou, H.; Davatzikos, C.

10.1101/784363 — bioinformatics — Posted on 2019-09-26

460 Structure-based identification and characterisation of novel inhibitors of KNa1.1 potassium channels, a stratified target for KCNT1-related epilepsy.

Cole, B. A.; Johnson, R. M.; Dejakaisaya, H.; Pilati, N.; Fishwick, C. W. G.; Muench, S. P.; Lippiat, J. D.

10.1101/779975 — pharmacology and toxicology — Posted on 2019-09-26

461 Discovery of a celecoxib binding site on PTGES with a cleavable chelation-assisted biotin probe

Miyamoto, D. K.; Flaxman, H. A.; Wu, H.-Y.; Gao, J.; Woo, C. M.

10.1101/782532 — pharmacology and toxicology — Posted on 2019-09-26

462 Temperature Dramatically Shapes Mosquito Gene Expression with Consequences for Mosquito-Zika Virus Interactions

Ferreira, P.; Tesla, B.; Horácio, E.; Nahum, L.; Brindley, M.; Mendes, T.; Murdock, C.

10.1101/783035 — molecular biology — Posted on 2019-09-26

463 Molecular Determinants of Substrate Selectivity of a Pneumococcal Rgg-regulated Peptidase-Containing ABC Transporter.

Wang, C. Y.; Medlin, J. S.; Nguyen, D. R.; Disbennett, W. M.; Dawid, S.

10.1101/783472 — microbiology — Posted on 2019-09-26

464 Principles of 3D Nucleus Organization and Epigenetic Regulation in Diploid Genome Revealed by Multi-omic Data from Hybrid Mouse

Han, Z.; Cui, K.; Placek, K.; Hong, N.; Lin, C.; Chen, W.; Zhao, K.; Jin, W.

10.1101/783662 — genomics — Posted on 2019-09-26

465 Cortical anchoring of the microtubule cytoskeleton is essential for neuron polarity and functioning

He, L.; Koostra, R.; Das, R.; Oudejans, E.; van Leen, E. V.; Ziegler, J.; Portegies, S.; de Haan, B.; van Regteren Altena, A. S.; Stucchi, R.; Altelaar, A. F. M.; Wieser, S.; Krieg, M.; Hoogenraad, C. C.; Harterink, M.

10.1101/783837 — cell biology — Posted on 2019-09-26

466 DNA-mediated assembly of multi-specific antibodies for T cell engaging and tumor killing

Pan, L.; Cao, C.; Run, C.; Zhou, L.; Chou, J. J.

10.1101/782862 — cancer biology — Posted on 2019-09-26

467 COPO: a metadata platform for brokering FAIR data in the life sciences

Etuk, A.; Shaw, F.; Gonzalez-Beltran, A.; Johnson, D.; Laporte, M.-A.; Rocca-Serra, P.; Arnaud, E.; Devare, M.; Kersey, P. J.; Sansone, S.-A.; Davey, R. P.

10.1101/782771 — bioinformatics — Posted on 2019-09-26

468 3D Genome Structure Variation Across Cell Types Captured by Integrating Multi-omics

Xu, Y.; Shen, T.; McCord, R. P.

10.1101/784223 — bioinformatics — Posted on 2019-09-26

469 Electrospun polyester-urethane scaffold preserves mechanical properties and exhibits strain stiffening during in situ tissue ingrowth and degradation

Krynauw, H.; Omar, R.; Koehne, J.; Limbert, G.; Davies, N. H.; Bezuidenhout, D.; Franz, T.

10.1101/783522 — bioengineering — Posted on 2019-09-26

470 Automated Spatially Targeted Optical Micro Proteomics (autoSTOMP) to determine protein complexity of subcellular structures

Yin, B.; Mendez, R. C.; Zhao, X.; Rahkit, R.; Hsu, K.-L.; Ewald, S. E.

10.1101/783340 — biochemistry — Posted on 2019-09-26

471 Structure and mechanism of a Type III CRISPR defence DNA nuclease activated by cyclic oligoadenylate

McMahon, S. A.; Zhu, W.; Graham, S.; Rambo, R.; White, M. F.; Gloster, T. M.

10.1101/784280 — biochemistry — Posted on 2019-09-26

472 Simultaneous and precise generation of Zebra3 and Wsl5 mutations in rice using CRISPR/Cas9-mediated adenine base editors

Molla, K. A.; Shih, J.; Yang, Y.

10.1101/784348 — plant biology — Posted on 2019-09-26

473 The use of mutants and inhibitors to study sterol biosynthesis in plants

De Vriese, K.; Pollier, J.; Goossens, A.; Beeckman, T.; Vanneste, S.

10.1101/784272 — plant biology — Posted on 2019-09-26

474 Neural signals relating future cooperation from prisoner’s dilemma feedback are outcome-contingent

Cervantes Constantino, F.; Garat, S.; Nicolaisen-Sobesky, E.; Paz, V.; Martinez-Montes, E.; Kessel, D.; Cabana, A.; Gradin, V. B.

10.1101/784033 — neuroscience — Posted on 2019-09-26

475 Dynamic encoding of perceptual features in primary somatosensory cortex upon reversal learning

Chereau, R.; Bawa, T.; Fodoulian, L.; Carleton, A.; Pages, S.; Holtmaat, A.

10.1101/782847 — neuroscience — Posted on 2019-09-26

476 First Complete Genome Sequence of the Novel Lineage G-IX (BD-18) of FMDV Serotype Asia1

Alam, A. S. M. R. U.; Ali, M. R.; Amin, M. A.; Siddique, M. A.; Sultana, M.; Hossain, M. A.

10.1101/776518 — molecular biology — Posted on 2019-09-26

477 Combinations of antifungals to effectively kill drug-resistant Candida auris

Jaggavarapu, S.; Burd, E. M.; Weiss, D. S.

10.1101/776096 — microbiology — Posted on 2019-09-26

478 Pan-genome analysis identifies intersecting roles for Pseudomonas specialized metabolites in potato pathogen inhibition

Stefanato, F. L.; Trippel, C.; Uszkoreit, S.; Ferrafiat, L.; Grenga, L.; Dickens, R.; Kelly, N.; Kingdon, A. D.; Ambrosetti, L.; Findlay, K. C.; Cheema, J.; Trick, M.; Chandra, G.; Tomalin, G.; Malone, J. G.; Truman, A. W.

10.1101/783258 — microbiology — Posted on 2019-09-26

479 RNF144A shapes the hierarchy of cytokine signaling to provide protective immunity against influenza

Afzali, B.; Kim, S.; West, E.; Nova-Lamperti, E.; Cheru, N.; Nagashima, H.; Yan, B.; Freiwald, T.; Merle, N.; Chauss, D.; Bijlmakers, M.-J.; Wietsman, G.; Yu, Z.-X.; Jankovic, D.; Mitra, S.; Villarino, A.; Kemper, C.; Laurence, A.; Kazemian, M.; O'Shea, J.; John, S.

10.1101/782680 — immunology — Posted on 2019-09-26

480 A High-Resolution Landscape of Mutations in the BCL6 Super-Enhancer in Normal Human B-Cells

Shen, J.-C.; Kamath-Loeb, A. S.; Kohrn, B. F.; Loeb, K. R.; Preston, B. D.; Loeb, L. A.

10.1101/783118 — genomics — Posted on 2019-09-26

481 Functional and in-silico interrogation of rare genomic variants impacting RNA splicing for the diagnosis of genomic disorders

Ellingford, J. M.; Thomas, H. B.; Rowlands, C.; Arno, G.; Beaman, G.; Gomes-Silva, B.; Campbell, C.; Gossan, N.; Hardcastle, C.; Webb, K.; O'Callaghan, C.; Hirst, R. A.; Ramsden, S.; Jones, E.; Clayton-Smith, J.; Webster, A. R.; Genomics England Research Consortium, ; O'Keefe, R. T.; Newman, W. G.; Black, G. C.

10.1101/781088 — genomics — Posted on 2019-09-26

482 No evidence for immune-gene specific signals of selection in termites

Meusemann, K.; Korb, J.; Schughart, M.; Staubach, F.

10.1101/783738 — evolutionary biology — Posted on 2019-09-26

483 Adaptive Tree Proposals for Bayesian Phylogenetic Inference

Meyer, X.

10.1101/783597 — evolutionary biology — Posted on 2019-09-26

484 New muscle identity code components identified by TRAP control shape and size of muscle subsets in Drosophila

Bertin, B.; Renaud, Y.; Jagla, T.; Lavergne, G.; Dondi, C.; Da Ponte, J. P.; Junion, G.; Jagla, K.

10.1101/784546 — developmental biology — Posted on 2019-09-26

485 Tissue-ABPP enables high-resolution confocal fluorescence imaging of serine hydrolase activity in cryosections - Application to glioma brain unveils activity hotspots originating from tumor-associated neutrophils

Aaltonen, N.; Singha, P.; Jakupovic, H.; Wirth, T.; Samaranayake, H.; Pasonen-Seppanen, S.; Rilla, K.; Varjosalo, M.; Edgington-Mitchell, L.; Kasperkiewicz, P.; Drag, M.; Kalvala, S.; Moisio, E.; Savinainen, J. R.; Laitinen, J. T.

10.1101/783704 — cancer biology — Posted on 2019-09-26

486 Tuning intermediate filament mechanics by indirect and direct charge variations

Schepers, A. V.; Lorenz, C.; Koester, S.

10.1101/784025 — biophysics — Posted on 2019-09-26

487 A native prokaryotic voltage-dependent calcium channel with a novel selectivity filter sequence

Shimomura, T.; Yonekawa, Y.; Nagura, H.; Tateyama, M.; Fujiyoshi, Y.; Irie, K.

10.1101/783647 — biophysics — Posted on 2019-09-26

488 Computational reconstruction of the complete Piezo1 structure reveals a unique footprint and specific lipid interactions

Chong, J.; De Vecchis, D.; Hyman, A. J.; Povstyan, O. V.; Shi, J.; Beech, D. J.; Kalli, A. C.

10.1101/783753 — biophysics — Posted on 2019-09-26

489 GeneRax: A tool for species tree-aware maximum likelihood based gene tree inference under gene duplication, transfer, and loss.

Morel, B.; Kozlov, A.; Stamatakis, A.; Szöllosi, G.

10.1101/779066 — bioinformatics — Posted on 2019-09-26

490 Diminished cortical excitation during perceptual impairments in a mouse model of autism

Del Rosario, J.; Speed, A.; Arrowood, H.; Motz, C.; Pardue, M.; Haider, B.

10.1101/657189 — neuroscience — Posted on 2019-09-26

491 Taste of time: A porous-medium model for human tongue surface with implications for taste perception

Wu, Z.; Zhao, K.

10.1101/780429 — neuroscience — Posted on 2019-09-26

492 PilT and PilU are homohexameric ATPases that coordinate to retract type IVa pili

Chlebek, J. L.; Hughes, H. Q.; Ratkiewicz, A. S.; Rayyan, R.; Wang, J. C.-Y.; Herrin, B. E.; Dalia, T. N.; Biais, N.; Dalia, A. B.

10.1101/634048 — microbiology — Posted on 2019-09-26

493 scClassify: hierarchical classification of cells

Lin, Y.; Cao, Y.; Kim, H. J.; Salim, A.; Speed, T. P.; Lin, D.; Yang, P.; Yang, J. Y. H.

10.1101/776948 — bioinformatics — Posted on 2019-09-26

494 Comparisons of the antibody repertoires of a humanized rodent and humans by high throughput sequencing

Joyce, C.; Burton, D. R.; Briney, B.

10.1101/776385 — immunology — Posted on 2019-09-26

495 Real-time dynamics of Plasmodium NDC80 as a marker for the kinetochore during atypical mitosis and meiosis

Pandey, R.; Zeeshan, M.; Ferguson, D. J. P.; Markus, R.; Brady, D.; Daniel, E.; Stanway, R. R.; Holder, A. A.; Guttery, D. S.; Tewari, R.

10.1101/767830 — cell biology — Posted on 2019-09-26

496 The common message of constraint-based optimization approaches: overflow metabolism is caused by two growth-limiting constraints

de Groot, D. H.; Lischke, J.; Muolo, R.; Planque, R.; Bruggeman, F. J.; Teusink, B.

10.1101/679019 — systems biology — Posted on 2019-09-26

497 Novel insights into N-glycan fucosylation and core xylosylation in C. reinhardtii

Oltmanns, A.; Hoepfner, L.; Scholz, M.; Zinzius, K.; Schulze, S.; Hippler, M.

10.1101/782292 — plant biology — Posted on 2019-09-26

498 Neurocognitive development of inhibitory control and substance use vulnerability

Quach, A.; Tervo-Clemmens, B.; Foran, W.; Calabro, F.; Chung, T.; Clark, D.; Luna, B.

10.1101/781286 — neuroscience — Posted on 2019-09-26

499 Common gene expression signatures in Parkinson’s disease are driven by changes in cell composition

Nido, G. S.; Dick, F.; Toker, L.; Pettersen, K.; Alves, G.; Tysnes, O.-B.; Jonassen, I.; Kristoffer, H.; Tzoulis, C.

10.1101/778910 — neuroscience — Posted on 2019-09-26

500 Activation of a nerve injury transcriptional signature in airway-innervating sensory neurons after lipopolysaccharide induced lung inflammation

Kaelberer, M. M.; Caceres, A. I.; Jordt, S.-E.

10.1101/669374 — genetics — Posted on 2019-09-26

501 The genomic architecture of fitness drives population viability during rapid environmental change

Kardos, M.; Luikart, G.

10.1101/660803 — evolutionary biology — Posted on 2019-09-26

502 Single-cell time-series mapping of cell fate trajectories reveals an expanded developmental potential for human PSC-derived distal lung progenitors

Hurley, K.; Ding, J.; Villacorta-Martin, C.; Herriges, M. J.; Jacob, A.; Vedaie, M.; Alysandratos, K. D.; Sun, Y. L.; Lin, C.; Werder, R. B.; Wilson, A. A.; Mithal, A.; Mostoslavsky, G.; Caballero, I. S.; Guttentag, S. H.; Ahangari, F.; Kaminski, N.; Rodriguez- Fraticelli, A.; Camargo, F.; Bar-Joseph, Z.; Kotton, D.

10.1101/782896 — developmental biology — Posted on 2019-09-26

503 Corticomuscular control of walking in older people and people with Parkinson’s disease

Roeder, L.; Boonstra, T. W.; Kerr, G. K.

10.1101/628016 — neuroscience — Posted on 2019-09-26

504 The olfactory basis of orchid pollination by mosquitoes

Lahondere, C.; Vinauger, C.; Okubo, R.; Wolff, G.; Chan, J. K.; Akbari, O.; Riffell, J.

10.1101/643510 — neuroscience — Posted on 2019-09-26

505 Compromised function of the ESCRT pathway promotes endolysosomal escape of tau seeds and propagation of tau aggregation

Chen, J. J.; Nathaniel, D. L.; Raghavan, P.; Nelson, M.; Tian, R.; Tse, E.; Hong, J. Y.; See, S. K.; Mok, S.-A.; Hein, M. Y.; Southworth, D. R.; Grinberg, L. T.; Gestwicki, J. E.; Leonetti, M. D.; Kampmann, M.

10.1101/637785 — cell biology — Posted on 2019-09-26

506 Vireo: Bayesian demultiplexing of pooled single-cell RNA-seq data without genotype reference

Huang, Y.; McCarthy, D. J.; Stegle, O.

10.1101/598748 — bioinformatics — Posted on 2019-09-26

507 Yellow strawberries and red bananas: The influence of object-colour knowledge on emerging object representations in the brain

Teichmann, L.; Quek, G. L.; Robinson, A.; Grootswagers, T.; Carlson, T.; Rich, A.

10.1101/533513 — neuroscience — Posted on 2019-09-26

508 A phosphate starvation response gene (psr1-like) is present and expressed in Micromonas pusilla and other marine algae

Fiore, C.; Alexander, H.; Kido Soule, M.; Kujawinski, E.

10.1101/484824 — microbiology — Posted on 2019-09-26

509 Additional layer of regulation via convergent gene orientation in yeasts

Gilet, J.; Conte, R.; Torchet, C.; Benard, L.; Ingrid, L.

10.1101/551689 — evolutionary biology — Posted on 2019-09-26

510 Photoperiod sensing of the circadian clock is controlled by ELF3 and GI

Anwer, U.; Davis, A.; Davis, S. J.; Quint, M.

10.1101/321794 — plant biology — Posted on 2019-09-26

511 D1 and D2 systems converge in the striatum to update goal-directed learning

Matamales, M.; McGovern, A. E.; Mi, J. D.; Mazzone, S. B.; Balleine, B. W.; Bertran-Gonzalez, J.

10.1101/780346 — neuroscience — Posted on 2019-09-26

512 Blue light-induced gene expression alterations in cultured neurons are the result of phototoxic interactions with neuronal culture media

Duke, C. G.; Savell, K. E.; Phillips, R. A.; Day, J. J.

10.1101/783084 — neuroscience — Posted on 2019-09-26

513 Securing the exchange of synthetic genetic constructs using digital signatures

Gallegos, J. E.; Kar, D. M.; Ray, I.; Ray, I.; Peccoud, J.

10.1101/750927 — synthetic biology — Posted on 2019-09-26

514 Genetic and epigenetic mechanisms underpinning the adaptive radiation of Aquilegia species

Lu, T.; Li, M.-R.; Ding, N.; Wang, Z.-H.; Lan, L.-Z.; Gao, X.; Li, L.-F.

10.1101/782821 — plant biology — Posted on 2019-09-26

515 Maternal high-fat diet induces sex-specific effects on inflammatory responses to corticosterone and lipopolysaccharide challenge in adult rat offspring

Wijenayake, S.; Rahman, M. F.; Lum, C. M.; de Vega, W. C.; Sasaki, A.; McGowan, P. O.

10.1101/780783 — neuroscience — Posted on 2019-09-26

516 Learning with naturalistic odor representations in a dynamic model of the Drosophila olfactory system

Kennedy, A.

10.1101/783191 — neuroscience — Posted on 2019-09-26

517 Prospective evaluation of beta-lactamase detection in penicillin susceptible Staphylococcus aureus by interpretation of the penicillin disc edge

Henderson, A.; Whiley, D.; Francis, F.; Engler, C.; Glover, M.; Douglas, J.; Gore, L.; Harris, P. N. A.; Paterson, D.; Nimmo, G. R.; Norton, R.

10.1101/776880 — microbiology — Posted on 2019-09-26

518 LAX28 is required for assembly of the inner dynein arm l1 and tether/tether head complex in the Leishmania flagellum

Beneke, T.; Banecki, K.; Fochler, S.; Gluenz, E.

10.1101/782888 — cell biology — Posted on 2019-09-26

519 Presynaptic developmental plasticity allows robust sparse wiring of the Drosophila mushroom body

Clowney, E. J.; Elkahlah, N. A.; Rogow, J. A.

10.1101/782961 — neuroscience — Posted on 2019-09-26

520 Local adaptation to abiotic and biotic stresses and phenotypic selection on flowering time in annual Brachypodium spp. along an aridity gradient

Penner, S.; Sapir, Y.

10.1101/783779 — evolutionary biology — Posted on 2019-09-26

521 Cellular compartment analysis of temporal activity by fluorescent in situ hybridization (catFISH) in the transcardially perfused rat brain

Gheidi, A.; Kumar, V.; Fitzpatrick, C. J.; Atkinson, R. L.; Morrow, J. D.

10.1101/767111 — neuroscience — Posted on 2019-09-26

522 Photo-Disassembly of Membrane Microdomains Revives Conventional Antibiotics against MRSA

Hui, J.; Dong, P.-T.; Liang, L.; Mandal, T.; Li, J.; Ulloa, E. R.; Zhan, Y.; Jusuf, S.; Zong, C.; Seleem, M. N.; Liu, G. Y.; Cui, Q.; Cheng, J.-X.

10.1101/747626 — microbiology — Posted on 2019-09-26

523 Acute Thiamethoxam toxicity in honeybees is not enhanced by common fungicide and herbicide and lacks stress-induced changes in mRNA splicing

Decio, P.; Ustaoglu, P.; Roat, T. C.; Malaspina, O.; Devaud, J.-M.; Stoger, R.; Soller, M.

10.1101/641407 — pharmacology and toxicology — Posted on 2019-09-26

524 Local adaptation of a dominant coastal tree to freshwater availability and solar radiation suggested by genomic and ecophysiological approaches

Cruz, M. V.; Mori, G. M.; Müller, C. S.; Silva, C. C.; Oh, D.-H.; Dassanayake, M.; Zucchi, M. I.; Oliveira, R. S.; de Souza, A.

10.1101/378612 — plant biology — Posted on 2019-09-26

525 The UCSC Xena platform for public and private cancer genomics data visualization and interpretation

Goldman, M.; Craft, B.; Hastie, M.; Repecka, K.; McDade, F.; Kamath, A.; Banerjee, A.; Luo, Y.; Rogers, D.; Brooks, A. N.; Zhu, J.; Haussler, D.

10.1101/326470 — cancer biology — Posted on 2019-09-26

526 Beyond SNP Heritability: Polygenicity and Discoverability of Phenotypes Estimated with a Univariate Gaussian Mixture Model

Holland, D.; Frei, O.; Desikan, R.; Fan, C.-C.; Shadrin, A. A.; Smeland, O. B.; Sundar, V. S.; Thompson, P.; Andreassen, O. A.; Dale, A. M.

10.1101/133132 — genomics — Posted on 2019-09-26

527 Repurposing the aldose reductase inhibitor and diabetic neuropathy drug epalrestat for the congenital disorder of glycosylation PMM2-CDG

Iyer, S.; Sam, F. S.; DiPrimio, N.; Preston, G.; Verhejein, J.; Murthy, K.; Parton, Z.; Tsang, H.; Lao, J.; Morava, E.; Perlstein, E. O.

10.1101/626697 — pharmacology and toxicology — Posted on 2019-09-26

528 Sequential compression of gene expression across dimensionalities and methods reveals no single best method or dimensionality

Way, G. P.; Zietz, M.; Rubinetti, V.; Himmelstein, D. S.; Greene, C. S.

10.1101/573782 — bioinformatics — Posted on 2019-09-26

529 Reproducible and Transparent Research Practices in Published Neurology Research

Rauh, S. L.; Torgerson, T.; Johnson, A.; Pollard, J.; Tritz, D.; Vassar, M.

10.1101/763730 — scientific communication and education — Posted on 2019-09-26

530 A dual function of TMEM70 in OXPHOS: assembly of complexes I and V

Sanchez-Caballero, L.; Elurbe, D. M.; Baertling, F.; Guerrero-Castillo, S.; van den Brand, M.; van Strien, J.; van Dam, T. J. P.; Rodenburg, R.; Brandt, U.; Huynen, M. A.; Nijtmans, L. G. J.

10.1101/697185 — cell biology — Posted on 2019-09-26

531 Spatial patterning of tissue volume loss in schizophrenia reflects brain network architecture

Shafiei, G.; Markello, R. D.; Makowski, C.; Talpalaru, A.; Kirschner, M.; Devenyi, G. A.; Guma, E.; Hagmann, P.; Cashman, N. R.; Lepage, M.; Chakravarty, M. M.; Dagher, A.; Misic, B.

10.1101/626168 — neuroscience — Posted on 2019-09-26

532 Genomic evidence for revising the Escherichia genus and description of Escherichia ruysiae sp. nov.

van der Putten, B. C.; Matamoros, S.; COMBAT Consortium, ; Schultsz, C.

10.1101/781724 — microbiology — Posted on 2019-09-26

533 Bacterial genes outnumber archaeal genes in eukaryotic genomes

Brueckner, J.; Martin, W. F.

10.1101/779579 — evolutionary biology — Posted on 2019-09-26

534 Differential effects of farming practice on cuckoo bumblebee communities in relation to their hosts

Howard, C. E.; Austin, A. J.; Gilbert, J. D.

10.1101/774406 — ecology — Posted on 2019-09-26

535 Unfolding and identification of membrane proteins from native cell membranes

Galvanetto, N.; Maity, S.; Ilieva, N.; Ye, Z.; Laio, A.; Torre, V.

10.1101/732933 — biophysics — Posted on 2019-09-26

536 Enhancers facilitate the birth of de novo genes and their integration into regulatory networks

Majic, P.; Payne, J.

10.1101/616581 — evolutionary biology — Posted on 2019-09-26

537 Molecular characterization of carbapenem-resistant Klebsiella pneumoniae isolates with focus on antimicrobial resistance

Yu, X.; Zhang, W.; Zhao, Z.; Ye, C.; Zhou, S.; Wu, S.; Han, L.; Han, Z.; Ye, H.

10.1101/778795 — bioengineering — Posted on 2019-09-26

538 Imaging plant germline differentiation within Arabidopsis flower by light sheet microscopy

Valuchova, S.; Mikulkova, P.; Pecinkova, J.; Klimova, J.; Krumnikl, M.; Bainar, P.; Heckmann, S.; Tomancak, P.; Riha, K.

10.1101/774299 — plant biology — Posted on 2019-09-26

539 Dendritic calcium signals in rhesus macaque motor cortex drive an optical brain-computer interface

Trautmann, E. M.; O'Shea, D. J.; Sun, X.; Marshel, J. H.; Crow, A.; Hsueh, B.; Vesuna, S.; Cofer, L.; Bohner, G.; Allen, W.; Kauver, I.; Quirin, S.; Macdougall, M.; Chen, Y.; Whitmire, M. P.; Ramakrishnan, C.; Sahani, M.; Seidemann, E.; Ryu, S.; Deisseroth, K.; Shenoy, K.

10.1101/780486 — neuroscience — Posted on 2019-09-26

540 Endocrine-exocrine signaling drives obesity-associated pancreatic ductal adenocarcinoma

Chung, K. M.; Singh, J.; Lawres, L.; Dorans, K. J.; Garcia, C.; Burkhardt, D. B.; Robbins, R.; Bhutkar, A.; Cardone, R.; Zhao, X.; Babic, A.; Vayrynen, S. A.; Dias Costa, A.; Nowak, J. A.; Chang, D. T.; Dunne, R. F.; Hezel, A. F.; Koong, A. C.; Wilhelm, J. J.; Bellin, M. D.; Nylander, V.; Gloyn, A. L.; McCarthy, M. I.; Kibbey, R. G.; Krishnaswamy, S.; Wolpin, B. M.; Jacks, T.; Fuchs, C. S.; Muzumdar, M. D.

10.1101/663583 — cancer biology — Posted on 2019-09-26

541 Voice Patterns in Schizophrenia: A Systematic Review and Bayesian Meta-Analysis

Parola, A.; Simonsen, A.; Bliksted, V.; Fusaroli, R.

10.1101/583815 — bioinformatics — Posted on 2019-09-26

542 On the origins of vulnerability to opioid addiction

Levis, S. C.; Bentzley, B. S.; Molet, J.; Bolton, J. L.; Perrone, C. R.; Baram, T. Z.; Mahler, S. V.

10.1101/716522 — neuroscience — Posted on 2019-09-26

543 Auditory brainstem models: KV1 ion-channels and depleting end-bulb synapses improve spatial encoding in reverberation

Brughera, A.; Mikiel-Hunter, J.; Dietz, M.; McAlpine, D.

10.1101/694356 — neuroscience — Posted on 2019-09-26

544 A comparative assessment of adult mosquito trapping methods to estimate spatial patterns of abundance and community composition in southern Africa

Gorsich, E. E.; Beechler, B. R.; van Bodegom, P. M.; Govender, D.; Guarido, M. M.; Venter, M.; Schrama, M.

10.1101/633552 — ecology — Posted on 2019-09-26

545 Cellular contractile forces are non-mechanosensitive

Feld, L.; Kellerman, L.; Mukherjee, A.; Livne, A.; Bouchbinder, E.; Wolfenson, H.

10.1101/733303 — cell biology — Posted on 2019-09-26

546 Transcriptome computational workbench (TCW): analysis of single and comparative transcriptomes

Soderlund, C. A.

10.1101/733311 — bioinformatics — Posted on 2019-09-26

547 The dual function receptor kinase, OsWAKL21.2, is involved in elaboration of lipaseA/esterase induced immune responses in rice

Malukani, K. K.; Ranjan, A.; Jyothi, H. S.; Patel, H. K.; Sonti, R. V.

10.1101/754234 — plant biology — Posted on 2019-09-26

548 Distributions of hypothalamic neuron populations co-expressing tyrosine hydroxylase and the vesicular GABA transporter in the mouse

Negishi, K.; Payant, M. A.; Schumacker, K. S.; Wittmann, G.; Butler, R. M.; Lechan, R. M.; Steinbusch, H. W. M.; Khan, A. M.; Chee, M. J.

10.1101/762328 — neuroscience — Posted on 2019-09-26

549 miR-206 enforces a slow muscle phenotype

Bjorkman, K. K.; Guess, M. G.; Harrison, B. C.; Polmear, M. M.; Peter, A. K.; Leinwand, L. A.

10.1101/756981 — molecular biology — Posted on 2019-09-26

550 Genomes of intracellular Leishmania parasites directly sequenced from patients

Domagalska, M. A.; Imamura, H.; Sanders, M.; Van den Broeck, F.; Bhattarai, N. R.; Vanaerschot, M.; Maes, I.; D'Haenens, E.; Rai, K.; Rijal, S.; Berriman, M.; Cotton, J. A.; Dujardin, J.-C.

10.1101/676163 — microbiology — Posted on 2019-09-26

551 Seeing distinct groups where there are none: spurious patterns from between-group PCA

Cardini, A. J.; O'Higgins, P.; Rohlf, F. J.

10.1101/706101 — evolutionary biology — Posted on 2019-09-26

552 Proteomic-based evaluation of nuclear transport of NLS-tagged trastuzumab-emtansine with enhanced cytotoxic potency.

Lacasse, V.; Beaudoin, S.; Jean, S.; Leyton, J.

10.1101/769588 — cell biology — Posted on 2019-09-26

553 Handling Noise in Protein Interaction Networks

Correia, F. B.; Coelho, E. D.; Oliveira, J. L.; Arrais, J. P.

10.1101/527606 — bioinformatics — Posted on 2019-09-26

554 Primate hippocampus size and organisation are predicted by sociality but not diet

Todorov, O. S.; Weisbecker, V.; Gilissen, E.; Zilles, K.; de Sousa, A. A.

10.1101/713867 — evolutionary biology — Posted on 2019-09-26

555 Biotrophic interactions disentangled: In-situ localisation of mRNAs to decipher plant and algal pathogen - host interactions at single cell level.

Badstoeber, J.; Gachon, C. M. M.; Ludwig-Muller, J.; Sandbichler, A. M.; Neuhauser, S.

10.1101/378794 — plant biology — Posted on 2019-09-26

556 Neural System Identification with Neural Information Flow

Seeliger, K.; Ambrogioni, L.; Gucluturk, Y.; Guclu, U.; van Gerven, M.

10.1101/553255 — neuroscience — Posted on 2019-09-26

557 De novo transcriptome assembly of the African bullfrog Pyxicephalus adspersus for molecular analysis of aestivation

Yoshida, N.; Kaito, C.

10.1101/588889 — molecular biology — Posted on 2019-09-26

558 The bacterial leader peptide peTrpL has a conserved function in antibiotic-dependent posttranscriptional regulation of ribosomal genes

Melior, H.; Maass, S.; Stoetzel, M.; Li, S.; Foerstner, K. U.; Schuetz, R.; Azarderakhsh, S.; Shevkoplias, A.; Barth-Weber, S.; Varadarajan, A. R.; Baumgardt, K.; Chervontseva, Z.; Ziebuhr, J.; Ahrens, C. H.; Becher, D.; Evguenieva-Hackenberg, E.

10.1101/606483 — microbiology — Posted on 2019-09-26

559 Microbial regulation of enteric eosinophils and its impact on tissue remodeling and Th2 immunity

Jimenez-Saiz, R.; Anipindi, V. C.; Galipeau, H.; Ellenbogen, Y.; Chaudhary, R.; Koenig, J. F.; Gordon, M. E.; Walker, T. D.; Mandur, T. S.; Abed, S.; Humbles, A.; Chu, D. K.; Erjefalt, J.; Ask, K.; Verdu, E. F.; Jordana, M.

10.1101/527473 — immunology — Posted on 2019-09-26

560 A mixed-model approach for powerful testing of genetic associations with cancer risk incorporating tumor characteristics

Zhang, H.; Zhao, N.; Ahearn, T. U.; Wheeler, W.; Garcia-Closas, M.; Chatterjee, N.

10.1101/446039 — genetics — Posted on 2019-09-26

561 Reciprocal cybrids reveal how organellar genomes affect plant phenotypes

Flood, P. J.; Theeuwen, T. P. J. M.; Schneeberger, K.; Keizer, P.; Kruijer, W.; Severing, E.; Kouklas, E.; Hageman, J. A.; Wijfjes, R.; Calvo-Baltanas, V.; Becker, F. F. M.; Schnabel, S. K. K.; Willems, L.; Ligterink, W.; van Arkel, J.; Mumm, R.; Gualberto, J. M.; Savage, L.; Kramer, D. M.; Keurentjes, J. J. B.; van Eeuwijk, F.; Koornneef, M.; Harbinson, J.; Aarts, M. G. M.; Wijnker, E.

10.1101/477687 — genetics — Posted on 2019-09-26

562 Improving the usability and comprehensiveness of microbial databases

Loeffler, C.; Karlsberg, A.; Martin, L. S.; Eskin, E.; Koslicki, D.; Mangul, S.

10.1101/497867 — bioinformatics — Posted on 2019-09-26

563 Long-read sequencing reveals the splicing profile of the calcium channel gene CACNA1C in human brain

Clark, M.; Wrzesinski, T.; Garcia-Bea, A.; Kleinman, J.; Hyde, T.; Weinberger, D.; Haerty, W.; Tunbridge, E.

10.1101/260562 — neuroscience — Posted on 2019-09-26

564 Risk factors associated with Avian Influenza subtype H9 outbreaks on poultry farms in Kathmandu valley, Nepal

Gompo, T. R.; Shah, B. R.; Karki, S.; Koirala, P.; Maharjan, M.; Bhatt, D. D.

10.1101/782375 — scientific communication and education — Posted on 2019-09-25

565 PHYSIOLOGICAL DIFFERENCES BETWEEN ADVANCED CROSSFIT ATHLETES, RECREATIONAL CROSSFIT PARTICIPANTS, AND PHYSICALLY-ACTIVE ADULTS

Mangine, G.; Stratton, M. T.; Almeda, C. G.; Roberts, M. D.; Esmat, T. A.; VanDusseldorp, T. A.; Feito, Y.

10.1101/782359 — physiology — Posted on 2019-09-25

566 Quantifying normal and parkinsonian gait features from home movies: Practical application of a deep learning-based 2D pose estimator

Sato, K.; Nagashima, Y.; Mano, T.; Iwata, A.; Toda, T.

10.1101/782367 — neuroscience — Posted on 2019-09-25

567 SK4 calcium-activated potassium channels activated by sympathetic nerves enhances atrial fibrillation vulnerability in a canine model of acute stroke

yang, m.; wang, y.; xiong, x.; xie, b.; liu, j.; yin, j.; zi, l.; wang, x.; tang, y.; huang, c.; Zhao, Q.

10.1101/782342 — neuroscience — Posted on 2019-09-25

568 Coronavirus Interferon Antagonists Differentially Modulate the Host Response during Replication in Macrophages

Deng, X.; Volk, A.; Chen, Y.; Kesely, K. R.; Hackbart, M.; Mettelman, R. C.; OBrien, A.; Mesecar, A. D.; Baker, S.

10.1101/782409 — microbiology — Posted on 2019-09-25

569 Commensalism in the Mimiviridae giant virus family

Jeudy, S.; Bertaux, L.; Alempic, J.-M.; Lartigue, A.; Legendre, M.; Belmudes, L.; Santini, S.; Philippe, N.; Beucher, L.; Biondi, E. G.; Juul, S.; Turner, D. J.; Coute, Y.; Claverie, J.-M.; Abergel, C.

10.1101/782383 — microbiology — Posted on 2019-09-25

570 Rab11A regulates the constitutive secretory pathway during Toxoplasma gondii invasion of host cells and parasite replication.

Venugopal, K.; Chehade, S.; Werkmeister, E.; Barois, N.; Periz, J.; Lafont, F.; Tardieux, I.; Khalife, J.; Langsley, G.; Meissner, M.; MARION, S.

10.1101/782391 — microbiology — Posted on 2019-09-25

571 Resection and repair of a Cas9 double-strand break at CTG trinucleotide repeats induces local and extensive chromosomal rearrangements

Mosbach, V.; Viterbo, D.; Descorps-Declere, S.; Poggi, L.; Vaysse-Zinkhofer, W.; Richard, G.-F.

10.1101/782268 — genetics — Posted on 2019-09-25

572 Gene-Gene interactions and pleiotropy in the brain nicotinic pathway associated with the heaviness and precocity of tobacco smoking among outpatients with multiple substance use disorders

Icick, R.; Besson, M.; Zerdazi, E. H.; Prince, N.; Bloch, V.; Laplanche, J.-L.; Faure, P.; Bellivier, F.; Maskos, U.; Vorspan, F.

10.1101/782565 — genetics — Posted on 2019-09-25

573 The circadian clock protein REVERBα inhibits pulmonary fibrosis development

Cunningham, P. S.; Meijer, P.; Nazgiewicz, A.; Anderson, S. G.; Borthwick, L. A.; Bagnall, J.; Kitchen, G. B.; Lodyga, M.; Begley, N.; Venkateswaran, R. V.; Shah, R.; Mercer, P. F.; Durrington, H. J.; Henderson, N. C.; Piper-Hanley, K.; Fisher, A. J.; Chambers, R. C.; Bechtold, D. A.; Gibbs, J. E.; Loudon, A. S.; Rutter, M. K.; Hinz, B.; Ray, D. W.; Blaikley, J.

10.1101/781666 — cell biology — Posted on 2019-09-25

574 MSqRob takes the missing hurdle: uniting intensity- and count-based proteomics

Goeminne, L. J. E.; Sticker, A.; Martens, L.; Gevaert, K.; Clement, L.

10.1101/782466 — bioinformatics — Posted on 2019-09-25

575 A synthetic likelihood solution to the silent synapse estimation problem

Lynn, M. B.; Lee, K. F. H.; Soares, C.; Naud, R.; Beique, J.-C.

10.1101/781898 — neuroscience — Posted on 2019-09-25

576 Genetic underpinnings of sociability in the UK Biobank

Bralten, J.; Klemann, C. J. H. M.; Mota, N. R.; de Witte, W.; Arango, C.; Fabbri, C.; Kas, M. J.; van der Wee, N.; Penninx, B. W. J. H.; Serretti, A.; Franke, B.; Poelmans, G.

10.1101/781195 — genetics — Posted on 2019-09-25

577 Genetic drug target validation using Mendelian randomization

Schmidt, A. F.; Finan, C.; Gordillo-Maranon, M.; Asselbergs, F. W.; Freitag, D.; Patel, R. S.; Tyl, B.; Chopade, S.; Faraway, R.; Zwierzyna, M.; Hingorani, A. D.

10.1101/781039 — genetics — Posted on 2019-09-25

578 Genomic evidence for revising the Escherichia genus and description of Escherichia ruysiae sp. nov.

van der Putten, B. C.; Matamoros, S.; COMBAT Consortium, ; Schultsz, C.

10.1101/781724 — microbiology — Posted on 2019-09-25

579 Exploration of insulin amyloid polymorphism using Raman spectroscopy and imaging

Ishigaki, M.; Morimoto, K.; Chatani, E.; Ozaki, Y.

10.1101/782672 — biophysics — Posted on 2019-09-25

580 Riffle Shuffle: A Supervised, Symmetry-Driven, GUI Toolkit for Mouse Brain Stack Registration and Plane Assignment

Cicconet, M.; Hochbaum, D. R.

10.1101/781880 — bioinformatics — Posted on 2019-09-25

581 Reproducibility Assessment of Neuromelanin-Sensitive Magnetic Resonance Imaging Protocols for Region-of-Interest and Voxelwise Analyses

Wengler, K.; He, X.; Abi-Dargham, A.; Horga, G.

10.1101/781815 — neuroscience — Posted on 2019-09-25

582 A dopamine-induced gene expression signature regulates neuronal function and cocaine response

Savell, K. E.; Zipperly, M. E.; Tuscher, J. J.; Duke, C. G.; Phillips, R. A.; Bauman, A. J.; Thukral, S.; Sultan, F. A.; Goska, N. A.; Ianov, L.; Day, J. J.

10.1101/781872 — neuroscience — Posted on 2019-09-25

583 UVA and UVB elicit distinct mutational signatures in melanoma

Hennessey, R. C.; Bowman, R. L.; Tallman, D. A.; Weiss, T. J.; Crawford, E. R.; Murphy, B. M.; Webb, A.; Zhang, S.; La Perle, K. M. D.; Burd, C. J.; Levine, R. L.; Shain, A. H.; Burd, C. E.

10.1101/778449 — cancer biology — Posted on 2019-09-25

584 Translational efficiency across healthy and tumor tissues is proliferation-related

Hernandez-Alias, X.; Benisty, H.; Schaefer, M. H.; Serrano, L.

10.1101/782227 — systems biology — Posted on 2019-09-25

585 Pangenome Analysis of Enterobacteria Reveals Richness of Secondary Metabolite Gene Clusters and their Associated Gene Sets

Mohite, O. S.; Lloyd, C. J.; Monk, J. M.; Weber, T.; Palsson, B. O.

10.1101/781328 — systems biology — Posted on 2019-09-25

586 Structural insights into the Kozak sequence interactions within the mammalian late-stage initiation complexes

Simonetti, A.; Guca, E.; Bochler, A.; Kuhn, L.; Hashem, Y.

10.1101/779504 — molecular biology — Posted on 2019-09-25

587 Identification of a parasitic symbiosis between respiratory metabolisms in the biogeochemical chlorine cycle

Barnum, T.; Cheng, Y.; Hill, K.; Lucas, L.; Carlson, H.; Coates, J. D.

10.1101/781625 — microbiology — Posted on 2019-09-25

588 Standing genetic variation and chromosomal rearrangements facilitate local adaptation in a marine fish

Cayuela, H.; Rougemont, Q.; Laporte, M.; Merot, C.; Normandeau, E.; Torresen, O.; Hoff, S. N. K.; Jentoft, S.; Sirois, P.; Castonguay, M.; Jansen, T.; Praebel, K.; Clement, M.; Bernatchez, L.

10.1101/782201 — genomics — Posted on 2019-09-25

589 Network propagation of rare mutations in Alzheimer’s disease reveals tissue-specific hub genes and communities

Scelsi, M. A.; Napolioni, V.; Greicius, M. D.; Altmann, A.; Alzheimer's Disease Neuroimaging Initiative, ; Alzheimer's Disease Sequencing Project,

10.1101/781203 — genomics — Posted on 2019-09-25

590 Evidence of adaptive host and vector manipulation by plant viruses revealed through combined meta-analysis and modeling approaches.

Chesnais, Q.; Bahlai, C.; Peace, A.; Crowder, D. W.; Bosque-Perez, N. A.; Mauck, K. E.

10.1101/781690 — ecology — Posted on 2019-09-25

591 Insilico analysis of structural and functional impact of SNPs in Pleckstrin

Pradhan, A. K.; Jainarayanan, A. K.; Ghosh, S.; A., N. M.

10.1101/782623 — bioinformatics — Posted on 2019-09-25

592 A fuzzy encounter complex precedes formation of the fully-engaged TIR1-Aux/IAA auxin co-receptor system

Ramans Harborough, S.; Kalverda, A. P.; Thompson, G. S.; Kieffer, M. L.; Kubes, M.; Quareshy, M.; Uzanova, V.; Prusinska, J.; Hayashi, K.-I.; Napier, R. M.; Manfield, I. W.; Kepinski, S.

10.1101/781922 — plant biology — Posted on 2019-09-25

593 The local state of chromatin compaction at transcription start sites controls transcription levels

Ishihara, S.; Sasagawa, Y.; Kameda, T.; Umeda, M.; Yamashita, H.; Kotomura, N.; Abe, M.; Shimono, Y.; Nikaido, I.

10.1101/782060 — molecular biology — Posted on 2019-09-25

594 A qPCR assay for Bordetella pertussis cells that enumerates both live and dead bacteria.

Ramkissoon, S.; MacArthur, I.; Ibrahim, M.; de Graaf, H.; Read, R.; Preston, A.

10.1101/782177 — microbiology — Posted on 2019-09-25

595 Formula alters preterm infant gut microbiota and increases its antibiotic resistance load

Parnanen, K.; Hultman, J.; Satokari, R.; Rautava, S.; Lamendella, R.; Wright, J.; McLimans, C. J.; Kelleher, S. L.; Virta, M.

10.1101/782441 — microbiology — Posted on 2019-09-25

596 Modelling the in vitro pre-infection dynamics of Colletotrichum spp. isolated from yellow passion fruit in function of environmental variables

Velame, K. V. C.; Santos-Filho, H. P.; Lima, A. d. A.; Braganca, C. A. D.; Laranjeira, F. F.

10.1101/781963 — microbiology — Posted on 2019-09-25

597 Strain-dependent impact of G and SH deletions provide new insights for live-attenuated HMPV vaccine development

Dubois, J.; Pizzorno, A.; Cavanagh, M.-H.; Padey, B.; Nicolas de Lamballerie, C.; Uyar, O.; Venable, M.-C.; Carbonneau, J.; Traversier, A.; Julien, T.; Couture, C.; Lina, B.; Hamelin, M.-E.; Terrier, O.; Rosa-Calatrava, M.; Boivin, G.

10.1101/781302 — microbiology — Posted on 2019-09-25

598 Characterization of non-canonical G beta-like protein FvGbb2 and its relationship with heterotrimeric G proteins in Fusarium verticillioides

Yan, H.; Shim, W. B.

10.1101/781484 — microbiology — Posted on 2019-09-25

599 DNAJB1-PRKACA fusion induces liver inflammation in zebrafish model of Fibrolamellar Hepatocellular Carcinoma

de Oliveira, S.; Houseright, R. A.; Korte, B. G.; Huttenlocher, A.

10.1101/781583 — cancer biology — Posted on 2019-09-25

600 Applying knowledge-driven mechanistic inference totoxicogenomics

Tripodi, I. J.; Callahan, T. J.; Westfall, J. T.; Meitzer, N. S.; Dowell, R. D.; Hunter, L. E.

10.1101/782011 — bioinformatics — Posted on 2019-09-25

601 Understanding artificial mouse-microbiome heterogeneity and six actionable themes to increase study power

Basson, A. R.; LaSalla, A.; Lam, G.; Kulpins, D.; Moen, E. L.; Sundrud, M.; Miyoshi, J.; Ilic, S.; Theriault, B. R.; Cominelli, F.; Rodriguez-Palacios, A.

10.1101/778043 — scientific communication and education — Posted on 2019-09-25

602 The mitochondrial Ca2+ uniporter MCU is required for normal glucose-stimulated insulin secretion in vitro and in vivo

Haythorne, E.; Georgiadou, E.; Dickerson, M.; Lopez Noriega, L.; Pullen, T. J.; da Silva Xavier, G.; Davis, S.; Martinez-Sanchez, A.; Semplici, F.; Rizzuto, R.; McGinty, J. A.; French, P. M.; Cane, M. C.; Jacobson, D. A.; Leclerc, I.; Rutter, G. A.

10.1101/781161 — physiology — Posted on 2019-09-25

603 High-resolution MEMRI characterizes laminar specific ascending and descending spinal cord pathways in rats

Krishnan, V.; Xu, J.; Mendoza, G. A.; Koretsky, A.; Anderson, S.; Pelled, G.

10.1101/781823 — neuroscience — Posted on 2019-09-25

604 Non-invasive stimulation of vagal afferents reduces gastric frequency

Teckentrup, V.; Neubert, S.; Santiago, J. C.; Hallschmid, M.; Walter, M.; Kroemer, N. B.

10.1101/773259 — neuroscience — Posted on 2019-09-25

605 Dissecting psa locus regulation in Yersinia pestis

Li, P.; Wang, X.; Smith, C.; Shi, Y.; Wade, J.; Sun, W.

10.1101/782003 — microbiology — Posted on 2019-09-25

606 Selection-based model of prokaryote pangenomes

Domingo-Sananes, M. R.; McInerney, J.

10.1101/782573 — microbiology — Posted on 2019-09-25

607 LRRK2 is recruited to phagosomes and co-recruits Rab8 and Rab10 in human pluripotent stem cell-derived macrophages

Lee, H.; Flynn, R.; Sharma, I.; Carling, P. J.; Nicholls, F. J.; Stegmann, M.; Vowles, J.; Wade-Martins, R.; James, W. S.; Cowley, S. A.

10.1101/779835 — immunology — Posted on 2019-09-25

608 Chromatin accessibility variations across pancreatic islet maturation

Sobel, J. A.; Guay, C.; Rodriguez-Trejo, A.; Stoll, L.; Menoud, V.; Regazzi, R.

10.1101/782318 — genomics — Posted on 2019-09-25

609 Replication gaps are a cancer vulnerability counteracted by translesion synthesis

Nayak, S.; Calvo, J.; Cong, K.; Berthiaume, E.; Jackson, J.; Dash, R. C.; Vindigni, A.; Hadden, K. M.; Cantor, S.

10.1101/781997 — cancer biology — Posted on 2019-09-25

610 Universal and distinct features of intra-population heterogeneity between differentiated cells and pluripotent stem cells

Jiang, Z.; Francesca Generoso, S.; Badia, M.; Payer, B.; Carey, L. B.

10.1101/782037 — systems biology — Posted on 2019-09-25

611 The mood stabilizer lithium slows down synaptic vesicle cycling at glutamatergic synapses

Tang, W.; Cory, B.; Lim, K. L.; Fivaz, M.

10.1101/780866 — neuroscience — Posted on 2019-09-25

612 Nucleus accumbens volume is related to obesity measures in an age-dependent fashion

Garcia-Garcia, I.; Morys, F.; Dagher, A.

10.1101/773119 — neuroscience — Posted on 2019-09-25

613 Satellite Imaging of Global Urbanicity relate to Adolescent Brain Development and Behavior

Xu, J.; Liu, X.; Ing, A.; Li, Q.; Qin, W.; Guo, L.; Huang, C.; Cheng, J.; Wang, M.; Geng, Z.; Zhu, W.; Zhang, B.; Liao, W.; Qiu, S.; Zhang, H.; Xu, X.; Yu, Y.; Gao, B.; Han, T.; Cui, G.; Chen, F.; Xian, J.; Li, J.; Zhang, J.; Zuo, X.; Wang, D.; Shen, W.; Miao, Y.; Yuan, F.; Lui, S.; Zhang, X.; Xu, K.; Zhang, L.; Ye, Z.; Banaschewski, T.; Barker, G. J.; Bokde, A. L. W.; Quinlan, E. B.; Desrivieres, S.; Flor, H.; Grigis, A.; Garavan, H.; Gowland, P.; Heinz, A.; Bruhl, R.; Martinot, J.-L.; Artiges, E.; Nees, F.; Orfanos, D. P.; Lemaitre, H.; Paus, T.; Poustka, L.; Hohmann, S.; Frohner, J. H.; Smo

10.1101/781674 — neuroscience — Posted on 2019-09-25

614 A nucleus-forming jumbophage evades CRISPR-Cas DNA targeting but is vulnerable to type III RNA-based immunity

Malone, L. M.; Warring, S. L.; Jackson, S. A.; Warnecke, C.; Gardner, P. P.; Gumy, L. F.; Fineran, P. C.

10.1101/782524 — microbiology — Posted on 2019-09-25

615 Components of the endocytic and recycling trafficking pathways interfere with the integrity of the Legionella-containing vacuole

Anand, I. S.; Choi, W.; Isberg, R. R.

10.1101/781849 — microbiology — Posted on 2019-09-25

616 Missing-In-Metastasis / Metastasis Suppressor 1 modulates B cell receptor signaling, B cell metabolic potential and T cell-independent immune responses.

Sarapulov, A. V.; Petrov, P.; Hernandez-Perez, S.; Sustar, V.; Kuokkanen, E.; Vainio, M.; Cords, L.; Fritzsche, M.; Carrasco, Y.; Mattila, P.

10.1101/782276 — immunology — Posted on 2019-09-25

617 H3K9me2 protects lifespan against the transgenerational burden of germline transcription in C. elegans

Lee, T. W.-s.; Engstrom, A. K.; David, H. S.; Carpenter, B. S.; Katz, D. J.

10.1101/782136 — genetics — Posted on 2019-09-25

618 PARPi synthetic lethality derives from replication-associated single-stranded DNA gaps

Cong, K.; Kousholt, A. N.; Peng, M.; Panzarino, N. J.; Lee, W. T. C.; Nayak, S.; Krais, J.; Calvo, J.; Bere, M.; Rothenberg, E.; Johnson, N.; Jonkers, J.; Cantor, S.

10.1101/781989 — cancer biology — Posted on 2019-09-25

619 A Non-genetic Mechanism for Chemoresistance in Lung Cancer: The Role of Integrin β4/Paxillin Axis

Mohanty, A.; Nam, A.; Pozhitkov, A.; Bhattacharya, S.; Yang, L.; Nathan, A.; Wu, X.; Srivastava, S.; Mambetsariev, I.; Nelson, M.; Pangeni, R.; Raz, D.; Chen, Y.; He, Y.; Orban, J.; Subbalakshmi, A. R.; Guo, L.; Nasser, M. W.; Koczywas, M.; Batra, S. K.; Jolly, M. K.; Kulkarni, P.; Massarelli, E.; Salgia, R.

10.1101/781807 — cancer biology — Posted on 2019-09-25

620 Ligand Entry into Fatty Acid Binding Protein via Local Unfolding instead of Gap Widening

Xiao, T.; Lu, Y.; Fan, J.-S.; Yang, D.

10.1101/782664 — biophysics — Posted on 2019-09-25

621 EAGLE: an algorithm that utilizes a small number of genomic features to predict tissue/cell type-specific enhancer-gene interaction

Gao, T.; Qian, J.

10.1101/781427 — bioinformatics — Posted on 2019-09-25

622 GSAlign - an efficient sequence alignment tool for intra-species genomes

Lin, H.-N.; Hsu, W.-L.

10.1101/782193 — bioinformatics — Posted on 2019-09-25

623 Mechanosensitive regulation of FGFR1 through the MRTF-SRF pathway

Zonderland, J.; Rezzola, S.; Moroni, L.

10.1101/782243 — bioengineering — Posted on 2019-09-25

624 It’s about time: Analysing an alternative approach for reductionist modelling of linear pathways in systems biology

Korsbo, N.; Jönsson, H.

10.1101/781708 — systems biology — Posted on 2019-09-25

625 Computational Justice: Simulating Structural Bias and Interventions

Momennejad, I.; Sinclair, S.; Cikara, M.

10.1101/776211 — scientific communication and education — Posted on 2019-09-25

626 Adipokines set neural tone by regulating synapse number

Brent, A. E.; Rajan, A.

10.1101/781526 — physiology — Posted on 2019-09-25

627 Genome-wide DNA methylation differences in nucleus accumbens of smokers vs. nonsmokers

Markunas, C. A.; Semick, S. A.; Quach, B. C.; Tao, R.; Deep-Soboslay, A.; Bierut, L. J.; Hyde, T. M.; Kleinman, J. E.; Johnson, E. O.; Jaffe, A. E.; Hancock, D. B.

10.1101/781542 — neuroscience — Posted on 2019-09-25

628 Optimizing auditory brainstem response acquisition using interleaved frequencies

Buran, B. N.; Elkins, S.; Kempton, J. B.; Porsov, E. V.; Brigande, J. V.; David, S. V.

10.1101/781831 — neuroscience — Posted on 2019-09-25

629 Mechanism underlying starvation-dependent modulation of olfactory behavior in Drosophila larva

Slankster, E.; Kollala, S.; Baria, D.; Dailey-Krempel, B.; Jain, R.; Odell, S. R.; Mathew, D.

10.1101/781682 — neuroscience — Posted on 2019-09-25

630 White matter in infancy is prospectively associated with language outcome in kindergarten

Zuk, J.; Yu, X.; Sanfilippo, J.; Figuccio, M. J.; Dunstan, J.; Carruthers, C.; Sideridis, G.; Gagoski, B.; Grant, P. E.; Gaab, N.

10.1101/781914 — neuroscience — Posted on 2019-09-25

631 Simultaneous development and periodic clustering of simple and complex cells in visual cortex

Kim, G.; Jang, J.; Paik, S.-B.

10.1101/782151 — neuroscience — Posted on 2019-09-25

632 dotdotdot: an automated approach to quantify multiplex single molecule fluorescent in situ hybridization (smFISH) images in complex tissues

Maynard, K. R.; Tippani, M.; Takahashi, Y.; Phan, B. N.; Hyde, T. M.; Jaffe, A. E.; Martinowich, K.

10.1101/781559 — neuroscience — Posted on 2019-09-25

633 Coordination amongst quadriceps muscles suggests neural regulation of internal joint stresses, not simplification of task performance

Alessandro, C.; Prashara, A.; Tentler, D. P.; Yeh, H.-Y.; Barroso, F. O.; Tresch, M. C.

10.1101/781534 — neuroscience — Posted on 2019-09-25

634 Polycomb Repressive Complex 2 antagonizes linker DNA methylation and chromatin compaction in Arabidopsis thaliana

Rougee, M.; Quadrana, L.; Zervudacki, J.; Colot, V.; Navarro, L.; Deleris, A.

10.1101/782219 — molecular biology — Posted on 2019-09-25

635 A highly prevalent and pervasive densovirus discovered among sea stars from the North American Atlantic Coast

Jackson, E. W.; Pepe-Ranney, C.; Johnson, M. R.; Distel, D. L.; Hewson, I.

10.1101/781609 — microbiology — Posted on 2019-09-25

636 An efficient single-cell transcriptomics workflow to assess protist diversity and lifestyle

Onsbring, H.; Tice, A. K.; Barton, B. T.; Brown, M. W.; Ettema, T. J. G.

10.1101/782235 — genomics — Posted on 2019-09-25

637 Gene duplications trace mitochondria to the onset of eukaryote complexity

Tria, F. D. K.; Brueckner, J.; Skejo, J.; Xavier, J. C.; Zimorski, V.; Gould, S. B.; Garg, S. G.; Martin, W. F.

10.1101/781211 — evolutionary biology — Posted on 2019-09-25

638 Transposable elements in individual genotypes of Drosophila simulans

Signor, S. A.

10.1101/781419 — evolutionary biology — Posted on 2019-09-25

639 Ancient genomic regulatory blocks are a major source for gene deserts in vertebrates after whole genome duplications

Touceda-Suarez, M.; Kita, E. M.; Acemel, R. D.; Firbas, P. N.; Magri, M. S.; Naranjo, S.; Tena, J. J.; Gomez-Skarmeta, J. L.; Maeso, I.; Irimia, M.

10.1101/776369 — evolutionary biology — Posted on 2019-09-25

640 Differential urine proteome analysis of a bovine IRBP induced uveitis rat model by discovery and parallel reaction monitoring proteomics

Qin, W.; Li, L.; Gao, Y.

10.1101/782045 — biochemistry — Posted on 2019-09-25

641 Improved genome assembly and annotation of the soybean aphid (Aphis glycines Matsumura)

Mathers, T. C.

10.1101/781617 — genomics — Posted on 2019-09-25

642 Tximeta: reference sequence checksums for provenance identification in RNA-seq

Love, M. I.; Soneson, C.; Hickey, P. F.; Johnson, L. K.; Pierce, N. T.; Shepherd, L.; Morgan, M.; Patro, R.

10.1101/777888 — bioinformatics — Posted on 2019-09-25

643 The sensitivity of transcriptomics BMD modeling to the methods used for microarray data normalization

Mezencev, R.; Auerbach, S. S.

10.1101/781567 — pharmacology and toxicology — Posted on 2019-09-25

644 The Object Space Task reveals a dissociation between semantic-like and episodic-like memory in a mouse model of Kleefstra Syndrome

Schut, E. H. S.; Alonso, A.; Smits, S.; Khamassi, M.; Samanta, A.; Negwer, M.; Nadif Kasri, N.; Navarro Lobato, I.; Genzel, L.

10.1101/781054 — neuroscience — Posted on 2019-09-25

645 Massive gene presence/absence variation in the mussel genome as an adaptive strategy: first evidence of a pan-genome in Metazoa

Gerdol, M.; Moreira, R.; Cruz, F.; Gomez-Garrido, J.; Vlasova, A.; Rosani, U.; Venier, P.; Naranjo-Ortiz, M. A.; Murgarella, M.; Balseiro, P.; Corvelo, A.; Frias, L.; Gut, M.; Gabaldon, T.; Pallavicini, A.; Canchaya, C.; Novoa, B.; Alioto, T. S.; Posada, D.; Figueras, A.

10.1101/781377 — genetics — Posted on 2019-09-25

646 GRIDSS, PURPLE, LINX: Unscrambling the tumor genome via integrated analysis of structural variation and copy number

Cameron, D. L.; Baber, J.; Shale, C.; Papenfuss, A. T.; Valle-Inclan, J. E.; Besselink, N.; Cuppen, E.; Priestley, P.

10.1101/781013 — bioinformatics — Posted on 2019-09-25

647 Applications of the Microphysiology Systems Database for Experimental ADME-Tox and Disease Models

Schurdak, M.; Vernetti, L.; Bergenthal, L.; Wolter, Q. K.; Shun, T. Y.; Karcher, S.; Taylor, D. L.; Gough, A.

10.1101/776500 — pharmacology and toxicology — Posted on 2019-09-25

648 Acute cerebellar knockdown of Sgce reproduces salient features of Myoclonus-dystonia (DYT11) in mice

Khodakhah, K.; Washburn, S.; Freemont, R.; Moreno-Escobar, M. C.; Angueyra, C.

10.1101/781005 — neuroscience — Posted on 2019-09-25

649 Correcting the coverage of credible sets in Bayesian genetic fine-mapping

Hutchinson, A.; Wallace, C.; Watson, H.

10.1101/781062 — genetics — Posted on 2019-09-25

650 Aging, computation, and the evolution of neural regeneration processes

Olle-Vila, A.; Seoane, L. F.; Sole, R.

10.1101/780163 — evolutionary biology — Posted on 2019-09-25

651 Exploring Integrative Analysis using the BioMedical Evidence Graph

Struck, A.; Walsh, B.; Buchanan, A.; Lee, J. A.; Spangler, R.; Stuart, J.; Ellrott, K.

10.1101/773911 — cancer biology — Posted on 2019-09-25

652 Shadow enhancers suppress input transcription factor noise through distinct regulatory logic

Waymack, R.; Fletcher, A.; Enciso, G.; Wunderlich, Z.

10.1101/778092 — systems biology — Posted on 2019-09-25

653 Evaluation of Reproducibility in Urology Publications

Rauh, S. L.; Johnson, B. S.; Bowers, A.; Tritz, D.; Vassar, M.

10.1101/773945 — scientific communication and education — Posted on 2019-09-25

654 Benchmarking Computational Methods for Estimating the Pathogenicity of Wilson’s Disease Mutations

Tang, N.; Sandahl, T.; Ott, P.; Kepp, K. P.

10.1101/780924 — biochemistry — Posted on 2019-09-25

655 Evaluation of Reproducible and Transparent Research Practices in Sports Medicine Research: A Cross-sectional study

Evans, S.; Fladie, I.; Anderson, M.; Tritz, D.; Vassar, M.

10.1101/773473 — scientific communication and education — Posted on 2019-09-25

656 The HLA Ligand Atlas. A resource of natural HLA ligands presented on benign tissues.

Marcu, A.; Bichmann, L.; Kuchenbecker, L.; Backert, L.; Kowalewski, D. J.; Freudenmann, L. K.; Löffler, M. W.; Lübke, M.; Walz, J. S.; Velz, J.; Moch, H.; Regli, L.; Silginer, M.; Weller, M.; Schlosser, A.; Kohlbacher, O.; Stevanovic, S.; Rammensee, H.-G.; Neidert, M. C.

10.1101/778944 — immunology — Posted on 2019-09-25

657 Modulation of brain activity by selective attention to audiovisual dialogues

Leminen, A.; Verwoert, M.; Moisala, M.; Salmela, V.; Wikman, P.; Alho, K.

10.1101/781344 — neuroscience — Posted on 2019-09-25

658 PHF2 regulates homology-directed DNA repair by controlling the resection of DNA double strand breaks

Alonso-de Vega, I.; Paz-Cabrera, M. C.; Wiegant, W. W.; Checa-Rodriguez, C.; Huertas, P.; Freire, R.; van Attikum, H.; Smits, V. A. J.

10.1101/782490 — molecular biology — Posted on 2019-09-25

659 Systematic identification of functional SNPs interrupting 3’ UTR polyadenylation signals

Shulman, E. D.; Elkon, R.

10.1101/782425 — genomics — Posted on 2019-09-25

660 Replication gaps underlie BRCA-deficiency and therapy response

Panzarino, N. J.; Krais, J.; Peng, M.; Mosqueda, M.; Nayak, S.; Bond, S.; Calvo, J.; Cong, K.; Doshi, M.; Bere, M.; Ou, J.; Deng, B.; Zhu, L. J.; Johnson, N.; Cantor, S.

10.1101/781955 — cancer biology — Posted on 2019-09-25

661 Wheat Germ Agglutinin Conjugated Fluorescent pH Sensors for Visualizing Proton Fluxes

Zhang, L.; Zhang, M.; Bellve, K.; Fogarty, K.; Castro, M. A.; Brauchi, S.; Kobertz, W. R.

10.1101/781799 — biophysics — Posted on 2019-09-25

662 Novel insights into N-glycan fucosylation and core xylosylation in C. reinhardtii

Oltmanns, A.; Hoepfner, L.; Scholz, M.; Zinzius, K.; Schulze, S.; Hippler, M.

10.1101/782292 — plant biology — Posted on 2019-09-25

663 Allosteric priming of E. coli CheY by the flagellar motor protein FliM

Wheatley, P.; Pandini, A.; Gupta, S.; Chen, Y.; Petzold, C. J.; Ralston, C. Y.; Blair, D. F.; Khan, S. M.

10.1101/781468 — biophysics — Posted on 2019-09-25

664 Actin shells control buckling and wrinkling of biomembranes

Kusters, R.; Simon, C.; Lopes Dos Santos, R.; Caorsi, V.; Wu, S.; Joanny, J.-F.; Sens, P.; Sykes, C.

10.1101/781153 — biophysics — Posted on 2019-09-25

665 SK4 calcium-activated potassium channels activated by sympathetic nerves enhances atrial fibrillation vulnerability in a canine model of acute stroke

yang, m.; wang, y.; xiong, x.; xie, b.; liu, j.; yin, j.; zi, l.; wang, x.; tang, y.; huang, c.; Zhao, Q.

10.1101/782342 — neuroscience — Posted on 2019-09-25

666 Differential effects of farming practice on cuckoo bumblebee communities in relation to their hosts

Howard, C. E.; Austin, A. J.; Gilbert, J. D.

10.1101/774406 — ecology — Posted on 2019-09-25

667 Supervised learning of protein thermal stability using sequence mining and distribution statistics of network centrality

Sharma, A.; Bagler, G.; Bera, D.

10.1101/777177 — bioinformatics — Posted on 2019-09-25

668 Perception of rhythmic speech is modulated by focal bilateral tACS

Zoefel, B.; Allard, I.; Anil, M.; Davis, M. H.

10.1101/647982 — neuroscience — Posted on 2019-09-25

669 Accumulated degeneration of transcriptional regulation contributes to disease development and detrimental clinical outcomes of Alzheimer’s disease

Meng, G.; Lu, D.; Yu, F.; Sun, J.; Ding, C.; Sun, Y.; Liu, X.; Dai, J.; Jin, W.; Zhang, W.

10.1101/779249 — neuroscience — Posted on 2019-09-25

670 Laminar-specific cortico-cortical loops in mouse visual cortex

Young, H.; Belbut, B.; Baeta, M.; Petreanu, L.

10.1101/773085 — neuroscience — Posted on 2019-09-25

671 Phenylacetyl-CoA, not phenylacetic acid, attenuates CepIR-regulated virulence in Burkholderia 2 cenocepacia

Lightly, T. J.; Frejuk, K. L.; Groleau, M.-C.; Chiarelli, L. R.; Ras, C.; Buroni, S.; Deziel, E.; Sorensen, J. L.; Cardona, S. T.

10.1101/700799 — microbiology — Posted on 2019-09-25

672 Draft genome of a porcupinefish, Diodon Holocanthus

Xu, M.; Su, X.; Zhang, M.; Li, M.; Huang, X.; Fan, G.; Liu, X.; Zhang, H.

10.1101/775387 — genomics — Posted on 2019-09-25

673 Coupling chromatin structure and dynamics by live super-resolution imaging

Barth, R.; Bystricky, K.; Shaban, H.

10.1101/777482 — biophysics — Posted on 2019-09-25

674 The axonal actin-spectrin lattice acts as a tension buffering shock absorber

Dubey, S.; Bhembre, N.; Bodas, S.; Ghose, A.; Callan-Jones, A.; Pullarkat, P. A.

10.1101/510560 — biophysics — Posted on 2019-09-25

675 Anatomical features, efficient photosystem, and Rubisco activity contribute to high leaf photosynthesis in wild rice

Mathan, J.; Singh, A.; Jathar, V.; Ranjan, A.

10.1101/754887 — plant biology — Posted on 2019-09-25

676 LeafByte: A mobile application that measures leaf area and herbivory quickly and accurately

Getman-Pickering, Z. L.; Campbell, A.; Aflitto, N.; Ugine, T.; Grele, A.; Davis, J.

10.1101/777516 — ecology — Posted on 2019-09-25

677 A comprehensive annotation and differential expression analysis of short and long non-coding RNAs in 16 bat genomes

Mostajo Berrospi, N.; Lataretu, M.; Krautwurst, S.; Mock, F.; Desiro, D.; Lamkiewicz, K.; Collatz, M.; Schoen, A.; Weber, F.; Marz, M.; Hölzer, M.

10.1101/738526 — bioinformatics — Posted on 2019-09-25

678 Thrombospondin module 1 domain (TSP1) of the matricellular protein CCN3 shows an atypical disulfide pattern and incomplete CWR layers

Xu, E.-R.; Lafita, A.; Bateman, A.; Hyvönen, M.

10.1101/779553 — biochemistry — Posted on 2019-09-25

679 Loss of Piccolo function in rats induces Pontocerebellar Hypoplasia type 3-like phenotypes

Falck, J.; Bruns, C.; Hoffmann, S.; Straub, I.; Plautz, E.; Orlando, M.; Munawar, H.; Rivalan, M.; Winter, Y.; Izsvak, Z.; Schmitz, D.; Hamra, K.; Hallermann, S.; Garner, C.; Ackermann, F.

10.1101/774422 — neuroscience — Posted on 2019-09-25

680 Distinct neural progenitor pools in the ventral telencephalon generate diversity in striatal spiny projection neurons

Heusden, F. v.; Macey-Dare, A.; Krajeski, R.; Sharott, A.; Ellender, T. J.

10.1101/770057 — neuroscience — Posted on 2019-09-25

681 Intraflagellar transport complex B proteins regulate the Hippo effector Yap1 during cardiogenesis

Peralta, M.; Jerabkova, K.; Lucchesi, T.; Ortiz, L. L.; Vitre, B.; Han, D.; Guillemot, L.; Dingare, C.; Sumara, I.; Mercader, N.; Lecaudey, V.; Delaval, B.; Meilhac, S. M.; Vermot, J.

10.1101/777128 — developmental biology — Posted on 2019-09-25

682 CK2-dependent phosphorylation of the Brg1 chromatin remodeling enzyme occurs during mitosis

Padilla-Benavides, T.; Haokip, D. T.; Yoon, Y.; Reyes-Gutierrez, P.; Rivera-Perez, J. A.; Imbalzano, A. N.

10.1101/781781 — cell biology — Posted on 2019-09-25

683 PHD3 controls energy homeostasis and exercise capacity.

10.1101/781765 — cell biology — Posted on 2019-09-25

684 Free fatty acid receptor 4 is a nutrient sensor that resolves inflammation to maintain cardiac homeostasis

Murphy, K. A.; Harsch, B. A.; Healy, C. L.; Joshi, S. S.; Huang, S.; Walker, R. E.; Wagner, B. M.; Ernste, K. M.; Huang, W.; Block, R.; Wright, C. D.; Tintle, N.; Jensen, B. C.; Shearer, G. C.; O'Connell, T. D.

10.1101/776294 — physiology — Posted on 2019-09-25

685 Epigenome-wide analysis uncovers a blood-based DNA methylation biomarker of lifetime cannabis use.

Markunas, C. A.; Hancock, D. B.; Xu, Z.; Quach, B.; Sandler, D. P.; Johnson, E. O.; Taylor, J. A.

10.1101/620641 — genomics — Posted on 2019-09-25

686 Inferring the Genetic Influences on Psychological Traits Using MRI Connectivity Predictive Models: Demonstration with Cognition

Hatoum, A. S.; Reineberg, A. E.; Kragel, P. A.; Wager, T. D.; Friedman, N. P.

10.1101/777821 — genetics — Posted on 2019-09-25

687 Deciphering anomalous heterogeneous intracellular transport with neural networks

Han, D. S.; Korabel, N.; Chen, R.; Johnston, M.; Allan, V. J.; Fedotov, S.; Waigh, T. A.

10.1101/777615 — cell biology — Posted on 2019-09-25

688 TRANSCUP: a scalable workflow for predicting cancer of unknown primary based on next-generation transcriptome profiling

Li, P.

10.1101/774315 — bioinformatics — Posted on 2019-09-25

689 Molecular characterization of carbapenem-resistant Klebsiella pneumoniae isolates with focus on antimicrobial resistance

Yu, X.; Zhang, W.; Zhao, Z.; Ye, C.; Zhou, S.; Wu, S.; Han, L.; Han, Z.; Ye, H.

10.1101/778795 — bioengineering — Posted on 2019-09-25

690 Wood capacitance is related to water content, wood density, and anatomy across 30 temperate tree species

Zieminska, K.; Rosa, E.; Gleason, S. M.; Holbrook, N. M.

10.1101/772764 — plant biology — Posted on 2019-09-25

691 A bacterial effector protein prevents MAPK-mediated phosphorylation of SGT1 to suppress plant immunity

Yu, G.; Xian, L.; Xue, H.; Yu, W.; Rufian, J.; Sang, Y.; Morcillo, R.; Wang, Y.; Macho, A.

10.1101/641241 — plant biology — Posted on 2019-09-25

692 Blood pressure variability from intra-arterial recordings in humans

Subramani, S.; Mukadam, F. A.; Gangadharan, N.; Baskaran, B.; S, B.; Kandasamy, S.; Wankhar, S.; Devasahayam, S.

10.1101/775866 — physiology — Posted on 2019-09-25

693 Forced isoform switching of Neat1_1 to Neat1_2 leads to the loss of Neat1_1 and the hyperformation of paraspeckles but does not affect the development and growth of mice

Isobe, M.; Toya, H.; Mito, M.; Chiba, T.; Asahara, H.; Hirose, T.; Nakagawa, S.

10.1101/698068 — molecular biology — Posted on 2019-09-25

694 Host circadian clocks do not set the schedule for the within-host replication of malaria parasites

O'Donnell, A. J.; Prior, K. F.; Reece, S. E.

10.1101/777011 — ecology — Posted on 2019-09-25

695 Myogenesis modelled by human pluripotent stem cells uncovers Duchenne muscular dystrophy phenotypes prior to skeletal muscle commitment

Mournetas, V.; Massourides, E.; Dupont, J.-B.; Kornobis, E.; Polveche, H.; Jarrige, M.; Gosselin, M. R. F.; Manousopoulou, A.; Garbis, S. D.; Gorecki, D. C.; Pinset, C.

10.1101/720920 — developmental biology — Posted on 2019-09-25

696 Signaling Diversity Enabled by Rap1-Regulated Plasma Membrane ERK with Distinct Temporal Dynamics

Keyes, J.; Ganesan, A.; Molinar-Inglis, O.; Hamidzadeh, A.; Ling, M.; Trejo, J.; Levchenko, A.; Zhang, J.

10.1101/781716 — cell biology — Posted on 2019-09-25

697 Assessment of a western blot signal for the Bcnt/Cfdp1, a tentative component of Srcap chromatin remodeling complex; trial to overcome off-target problems

Iwashita, S.; Suzuki, T.; Kiriyama, Y.; Dohmae, N.; Ohka, Y.; Song, S.-Y.; Nakashima, K.

10.1101/739862 — biochemistry — Posted on 2019-09-25

698 Environmental DNA facilitates accurate, indigenous-led, inexpensive, and multi-year population estimates of millions of Eulachon fish

Pochardt, M.; Allen, J. M.; Hart, T.; Miller, S. D. L.; Yu, D. W.; Levi, T.

10.1101/620500 — ecology — Posted on 2019-09-25

699 Persistent Cyfip1 expression is required to maintain the adult subventricular zone neurogenic niche

Habela, C. W.; Yoon, K.-J.; Kim, N.; Taga, A.; Bell, K.; Bergles, D.; Maragakis, N. J.; Ming, G.-l.; Song,, H.

10.1101/781856 — developmental biology — Posted on 2019-09-25

700 Anisotropy links cell shapes to a solid-to-fluid transition during convergent extension

Wang, X.; Merkel, M.; Sutter, L. B.; Erdemci-Tandogan, G.; Manning, M. L.; Kasza, K. E.

10.1101/781492 — developmental biology — Posted on 2019-09-25

701 Animals exhibit personality traits in their movement: a case study on location trajectories of primates

Morita, T.; Toyoda, A.; Aisu, S.; Kaneko, A.; Suda-Hashimoto, N.; Matsuda, I.; Koda, H.

10.1101/775486 — animal behavior and cognition — Posted on 2019-09-25

702 Choosing what we like vs liking what we choose:How choice-induced preference change might actually be instrumental to decision-making.

Lee, D. G.; Daunizeau, J.

10.1101/661116 — neuroscience — Posted on 2019-09-25

703 Auditory brainstem models: KV1 ion-channels and depleting end-bulb synapses improve spatial encoding in reverberation

Brughera, A.; Mikiel-Hunter, J.; Dietz, M.; McAlpine, D.

10.1101/694356 — neuroscience — Posted on 2019-09-25

704 Educational Attainment Polygenic Score is Associated with Depressive Symptoms via Socioeconomic Status: A Gene-Environment-Trait Correlation

Avinun, R.

10.1101/727552 — genetics — Posted on 2019-09-25

705 Vimentin intermediate filaments undergo irreversible conformational changes during cyclic loading

Forsting, J.; Kraxner, J.; Witt, H.; Janshoff, A.; Koester, S.

10.1101/673673 — biophysics — Posted on 2019-09-25

706 Cross-species regulatory sequence activity prediction

Kelley, D. R.

10.1101/660563 — bioinformatics — Posted on 2019-09-25

Etzel, J.; Courtney, Y.; Carey, C. E.; Gehred, M. Z.; Agrawal, A.; Braver, T. S.

10.1101/642397 — neuroscience — Posted on 2019-09-25

708 Functional integration of \"undead\" neurons in the olfactory system

Prieto-Godino, L. L.; Silbering, A. F.; Khallaf, M. A.; Cruchet, S.; Bojkowska, K.; Pradervand, S.; Hansson, B. S.; Knaden, M.; Benton, R.

10.1101/623488 — neuroscience — Posted on 2019-09-25

709 Gene knock-ins in Drosophila using homology-independent insertion of universal donor plasmids

Bosch, J.; Colbeth, R.; Zirin, J.; Perrimon, N.

10.1101/639484 — genetics — Posted on 2019-09-25

710 Effect of time-series length and resolution on abundance- and trait-based early warning signals of population declines

Arkilanian, A.; Clements, C. F.; Ozgul, A.; Baruah, G.

10.1101/568600 — ecology — Posted on 2019-09-25

711 Abnormal morphology biases haematocrit distribution in tumour vasculature and contributes to heterogeneity in tissue oxygenation

Bernabeu, M. O.; Kory, J.; Grogan, J. A.; Markelc, B.; Beardo, A.; d'Avezac, M.; Kaeppler, J.; Daly, N.; Hetherington, J.; Krueger, T.; Maini, P. K.; Pitt-Francis, J. M.; Muschel, R. J.; Alarcon, T.; Byrne, H. M.

10.1101/640060 — cancer biology — Posted on 2019-09-25

712 Perceptual saccadic suppression starts in the retina

Idrees, S.; Baumann, M.-P.; Franke, F.; Muench, T. A.; Hafed, Z. M.

10.1101/562595 — neuroscience — Posted on 2019-09-25

713 Active Efficient Coding Explains the Development of Binocular Vision and its Failure in Amblyopia

Eckmann, S.; Klimmasch, L.; Shi, B. E.; Triesch, J.

10.1101/571802 — neuroscience — Posted on 2019-09-25

714 REM negatively predicts statistical learning but not other forms of gist

Matorina, N.; Poppenk, J.

10.1101/578492 — neuroscience — Posted on 2019-09-25

715 The 190 kDa Ankyrin-G isoform is required for the dendritic stability of neurons and its palmitoylation is altered by lithium

Piguel, N. H.; Yoon, S.; De Simone, F. I.; Sanders, S. S.; Gao, R.; Horan, K. E.; Dionisio, L. E.; Garza, J. C.; Petryshen, T.; Thomas, G. M.; Smith, K. R.; Penzes, P.

10.1101/620708 — neuroscience — Posted on 2019-09-25

716 Pervasive translation of circular RNAs driven by short IRES-like elements

Fan, X.; Yang, Y.; Wang, Z.

10.1101/473207 — molecular biology — Posted on 2019-09-25

717 ELECTOR: Evaluator for long reads correction methods

Marchet, C.; Morisse, P.; Lecompte, L.; Lefebvre, A.; Lecroq, T.; Peterlongo, P.; Limasset, A.

10.1101/512889 — bioinformatics — Posted on 2019-09-25

718 Orc4 spatiotemporally stabilizes centromeric chromatin

Sreekumar, L.; Kumari, K.; Bakshi, A.; Varshney, N.; Thimmappa, B. C.; Guin, K.; Narlikar, L.; Padinhateeri, R.; Siddharthan, R.; Sanyal, K.

10.1101/465880 — molecular biology — Posted on 2019-09-25

719 De novo identification of satellite DNAs in the sequenced genomes of Drosophila virilis and D. americana using the RepeatExplorer and TAREAN pipelines

Silva, B. S. M. L. e.; Heringer, P.; Dias, G. B.; Svartman, M.; Kuhn, G.

10.1101/781146 — genomics — Posted on 2019-09-24

720 APOBEC3B reporter myeloma cell lines identify DNA damage response pathways leading to APOBEC3B expression

Yamazaki, H.; Shirakawa, K.; Matsumoto, T.; Kazuma, Y.; Matsui, H.; Horisawa, Y.; Stanford, E.; Sarca, A. D.; Shirakawa, R.; Shindo, K.; Takaori-Kondo, A.

10.1101/781112 — cancer biology — Posted on 2019-09-24

721 Radiofrequency Remote Control of Thermolysin Activity

Ackerson, C. J.; Collins, C. B.

10.1101/781138 — biophysics — Posted on 2019-09-24

722 Molecular dynamic simulations to investigate the structural impact of known drug resistance mutations on HIV-1C Integrase-Dolutegravir binding

Chitongo, R.; Obasa, A. E.; Mikasi, S. G.; Jacobs, G. B.; cloete, r.

10.1101/781120 — bioinformatics — Posted on 2019-09-24

723 Salivary molecular spectroscopy: a rapid and non-invasive monitoring tool for diabetes mellitus during insulin treatment

Caixeta, D. C.; AGUIAR, E. M. G.; CARDOSO-SOUSA, L.; Coelho, L. M. D.; Oliveira, S. W.; Espindola, F. S.; Raniero, L.; Crosara, K. T. B.; Baker, M. J.; Siqueira, W. L.; Sabino-Silva, R.

10.1101/781096 — bioinformatics — Posted on 2019-09-24

724 Comparative transcriptome analysis of the ovary and testis of the lacustrine goby (Gobiopterus lacustris)

dong, z.; Huang, C.; Zhang, H.; Huang, S.; Zhang, N.; Tian, C.; Wang, Z.; Guo, Y.

10.1101/781104 — molecular biology — Posted on 2019-09-24

725 Azadirachta indica (A. Juss.) reduces circulating Dirofilaria immitis microfilariae in vivo

Mukherjee, N.; Joardar, N.; Mukherjee, S.; Sinha Babu, S. P.

10.1101/781278 — zoology — Posted on 2019-09-24

726 Early developmental exposure to Fluoxetine and Citalopram results in different neurodevelopmental outcomes

Liu, K.; Garcia, A.; Park, J. J.; Toliver, A.; Ramos, L.; Aizenman, C. D.

10.1101/780411 — neuroscience — Posted on 2019-09-24

727 Engineering of membrane complex sphingolipids improves osmotic tolerance of Saccharomyces cerevisiae

Zhu, G.; Yin, N.; Luo, Q.; Liu, J.; Chen, X.; Liu, L.; Wu, J.

10.1101/780817 — bioengineering — Posted on 2019-09-24

728 Processive activity of the replicative DNA polymerases in the replisome of live eukaryotic cells

Kapadia, N.; El-Hajj, Z. W.; Beattie, T. R.; Yu, A.; REYES LAMOTHE, R.

10.1101/780270 — molecular biology — Posted on 2019-09-24

729 Generalized Multi-SNP Mediation Intersection-Union Test

Zhong, W.; Darville, T.; Zheng, X.; Fine, J.; Li, Y.

10.1101/780767 — genetics — Posted on 2019-09-24

730 Intra-strain elicitation and suppression of plant immunity by Ralstonia solanacearum type-III effectors in Nicotiana benthamiana

Sang, Y.; Yu, W.; Zhuang, H.; Wei, Y.; Derevnina, L.; Luo, J.; Macho, A.

10.1101/780890 — plant biology — Posted on 2019-09-24

731 Hue tuning curves in V4 change with visual context

Benjamin, A. S.; Ramkumar, P.; Fernandes, H.; Smith, M. A.; Kording, K. P.

10.1101/780478 — neuroscience — Posted on 2019-09-24

732 CRISPR-Cas9 generated Pompe knock-in murine model exhibits early-onset cardiomyopathy and impaired skeletal muscle function

Huang, J. Y.; Kan, S.-H.; Rangel, A. D.; Chan, Y.; Davis-Turak, J.; Dalton, N. D.; Neumann, J.; Wang, R. Y.

10.1101/780320 — molecular biology — Posted on 2019-09-24

733 Induction of hierarchy and time through one-dimensional probability space with certain topologies

Adachi, S.

10.1101/780882 — evolutionary biology — Posted on 2019-09-24

734 Exploring the effect of Relative Language Distance on Bilingual Brain Structure: a cross-sectional VBM study

Ramanujan, K.

10.1101/779751 — neuroscience — Posted on 2019-09-24

735 Type IV CRISPR-Cas systems are highly diverse and involved in competition between plasmids

Pinilla-Redondo, R.; Mayo-Munoz, D.; Russel, J.; Garrett, R. A.; Randau, L.; Soerensen, S. J.; Shah, S. A.

10.1101/780106 — microbiology — Posted on 2019-09-24

736 Unusual genome expansion and transcription suppression in ectomycorrhizal Tricholoma matsutake by repetitive insertions of transposable elements

Min, B.; Yoon, H.; Park, J.; Oh, Y.-L.; Kong, W.-S.; Kim, J.-G.; Choi, I.-G.

10.1101/780601 — genomics — Posted on 2019-09-24

737 Influence of different glycoproteins and of the virion core on SERINC5 antiviral activity

Diehl, W. E.; Guney, M. H.; Kyawe, P. P.; White, J. M.; Pizzato, M.; Luban, J.

10.1101/780577 — microbiology — Posted on 2019-09-24

738 Flaming as part of aseptic technique increases CO2(g) and decreases pH in freshwater culture media

Zepernick, B. N.; Krausfeldt, L. E.; Wilhelm, S. W.

10.1101/780353 — microbiology — Posted on 2019-09-24

739 A processive rotary mechanism couples substrate unfolding and proteolysis in the ClpXP degradation machinery

Ripstein, Z. A.; Vahidi, S.; Houry, W. A.; Rubinstein, J. L.; Kay, L. E.

10.1101/780494 — biophysics — Posted on 2019-09-24

740 Neural dynamics of perceptual inference and its reversal during imagery

Dijkstra, N.; Ambrogioni, L.; van Gerven, M.

10.1101/781294 — neuroscience — Posted on 2019-09-24

741 Neurocognitive development of inhibitory control and substance use vulnerability

Quach, A.; Tervo-Clemmens, B.; Foran, W.; Calabro, F.; Chung, T.; Clark, D.; Luna, B.

10.1101/781286 — neuroscience — Posted on 2019-09-24

742 CRISPR/Cas13a signal amplification linked immunosorbent assay (CLISA)

Chen, Q.; Tian, T.; Xiong, E.; Wang, P.; Zhou, X.

10.1101/781237 — molecular biology — Posted on 2019-09-24

743 Comparative genomics for the elucidation of multidrug resistance (MDR) in Candida lusitaniae

Kannan, A.; Asner, S.; Trachsel, E.; Kelly, S. L.; Parker, J.; Sanglard, D.

10.1101/780833 — microbiology — Posted on 2019-09-24

744 The dyslexia susceptibility gene KIAA0319 influences cilia length, cell migration and mechanical cell-substrate interaction

Diaz, R.; Kronenberg, N. M.; Martinelli, A.; Liehm, P.; Riches, A. C.; Gather, M. C.; Paracchini, S.

10.1101/780874 — cell biology — Posted on 2019-09-24

745 The OpenPicoAmp-100k : an open-source high performance amplifier for single channel recording in planar lipid bilayers.

Shlyonsky, V.; Gall, D.

10.1101/781260 — biophysics — Posted on 2019-09-24

746 Anticipatory Control of Momentum for Bipedal Walking on Uneven Terrain

Darici, O.; Temeltas, H.; Kuo, A.

10.1101/769828 — bioengineering — Posted on 2019-09-24

747 Habitual foot strike pattern does not affect simulated Triceps Surae muscle metabolic energy consumption during running

Swinnen, W.; Hoogkamer, W.; De Groote, F.; Vanwanseele, B.

10.1101/779686 — physiology — Posted on 2019-09-24

748 Single cell transcriptome profiling of the human alcohol-dependent brain

Brenner, E.; Tiwari, G. R.; Liu, Y.; Brock, A.; Mayfield, R. D.

10.1101/780304 — neuroscience — Posted on 2019-09-24

749 Gaussian embedding-based functional brain connectomic analysis for amnestic mild cognitive impairment patients with cognitive training

Xu, M.; Wang, Z.; Zhang, H.; Pantazis, D.; Wang, H.; Li, Q.

10.1101/779744 — neuroscience — Posted on 2019-09-24

750 Consumption of a Western-style diet modulates the response of the murine gut microbiome to ciprofloxacin

Cabral, D. J.; Wurster, J. I.; Korry, B. J.; Penumutchu, S.; Belenky, P.

10.1101/780049 — microbiology — Posted on 2019-09-24

751 First evidence of host range expansion in virophages and its potential impact on giant viruses and host cells

Mougari, S.; Chelkha, N.; Sahmi-Bounsiar, D.; Di Pinto, F.; Colson, P.; Abrahao, J.; La Scola, B.

10.1101/780841 — microbiology — Posted on 2019-09-24

752 Three-Compartment Model of CAR T-cell Immunotherapy

Rodrigues, B. J.; Barros, L. R. C.; Almeida, R. C.

10.1101/779793 — immunology — Posted on 2019-09-24

753 Studying the drug treatment pattern based on the action of drug and multi-layer network model

Yu, L.; Shi, Y.; Gao, L.; Zou, Q.

10.1101/780858 — bioinformatics — Posted on 2019-09-24

754 Retinal horizontal cells use different synaptic sites for global feedforward and local feedback signaling

Behrens, C.; Zhang, Y.; Yadav, S. C.; Haverkamp, S.; Irsen, S.; Korympidou, M. M.; Schaedler, A.; Dedek, K.; Smith, R. G.; Euler, T.; Berens, P.; Schubert, T.

10.1101/780031 — neuroscience — Posted on 2019-09-24

755 Common gene expression signatures in Parkinson’s disease are driven by changes in cell composition

Nido, G. S.; Dick, F.; Toker, L.; Pettersen, K.; Alves, G.; Tysnes, O.-B.; Jonassen, I.; Kristoffer, H.; Tzoulis, C.

10.1101/778910 — neuroscience — Posted on 2019-09-24

756 PANCREATIC ISLETS COMMUNICATE WITH THE BRAIN VIA VAGAL SENSORY NEURONS

Makhmutova, M.; Weitz, J.; Tamayo, A.; Pereira, E.; Almaca, J.; Rodriguez-Diaz, R.; Caicedo, A.

10.1101/780395 — neuroscience — Posted on 2019-09-24

757 Proposal of a taxonomic nomenclature for the Bacillus cereus group which reconciles genomic definitions of bacterial species with clinical and industrial phenotypes

Carroll, L. M.; Wiedmann, M.; Kovac, J.

10.1101/779199 — microbiology — Posted on 2019-09-24

758 More affordable and effective noninvasive SNP genotyping using high-throughput amplicon sequencing

Eriksson, C. E.; Ruprecht, J.; Levi, T.

10.1101/776492 — ecology — Posted on 2019-09-24

759 Cep55 overexpression promotes genomic instability and tumorigenesis in mice

Sinha, D.; Nag, P.; Nanayakkara, D.; Duijf, P. H. G.; Burgess, A.; Raninga, P.; Smits, V. A. J.; Bain, A. L.; Subramanian, G. N.; Wall, M.; Finnie, J. W.; Kalimutho, M.; Khanna, K. K.

10.1101/780775 — cancer biology — Posted on 2019-09-24

760 Single-cell analysis of antiviral neuroinflammatory responses in the mouse dorsal raphe nucleus

Huang, K. W.; Sabatini, B. L.

10.1101/780205 — neuroscience — Posted on 2019-09-24

761 CpG-ODN 2007 protects zebrafish against Vibrio vulnificus-induced infection

Chen, H.; Zhang, L.; Li, S.; Ling, K.; Chen, X.; Lin, C.

10.1101/780742 — immunology — Posted on 2019-09-24

762 Disease swamps molecular signatures of genetic-environmental associations to abiotic factors in Tasmanian devil (Sarcophilus harrisii) populations

Fraik, A. K.; Margres, M. J.; Epstein, B.; Barbosa, S.; Jones, M.; Hendricks, S.; Schonfeld, B.; Stahlke, A.; Veillet, A.; Hamede, R.; McCallum, H.; Lopez-Contreras, E.; Kallinen, S. J.; Hohenlohe, P. A.; Kelley, J. L.; Storfer, A.

10.1101/780122 — evolutionary biology — Posted on 2019-09-24

763 Taste of time: A porous-medium model for human tongue surface with implications for taste perception

Wu, Z.; Zhao, K.

10.1101/780429 — bioengineering — Posted on 2019-09-24

764 Custom built scanner and simple image processing pipeline enables low-cost, high-throughput phenotyping of maize ears

Warman, C.; Fowler, J. E.

10.1101/780650 — plant biology — Posted on 2019-09-24

765 Agrobacterium-mediated transient transformation of sorghum leaves for accelerating functional genomics and genome editing studies.

Sharma, R.; Liang, Y.; Lee, M. Y.; Pidatala, V. R.; Mortimer, J. C.; Scheller, H.

10.1101/779918 — plant biology — Posted on 2019-09-24

766 RNA interference of NADPH-Cytochrome P450 reductase increases susceptibilities to multiple acaricides in Tetranychus urticae

Adesanya, A. W.; Cardenas, A.; Lavine, M. D.; Walsh, D. B.; Lavine, L. C.; Zhu, F.

10.1101/780536 — pharmacology and toxicology — Posted on 2019-09-24

767 Dendritic calcium signals in rhesus macaque motor cortex drive an optical brain-computer interface

Trautmann, E. M.; O'Shea, D. J.; Sun, X.; Marshel, J. H.; Crow, A.; Hsueh, B.; Vesuna, S.; Cofer, L.; Bohner, G.; Allen, W.; Kauver, I.; Quirin, S.; Macdougall, M.; Chen, Y.; Whitmire, M.; Ramakrishnan, C.; Sahani, M.; Seidemann, E.; Ryu, S.; Deisseroth, K.; Shenoy, K.

10.1101/780486 — neuroscience — Posted on 2019-09-24

768 Inducible degron-dependent depletion of the RNA polymerase I associated factor PAF53 demonstrates it is essential for cell growth and allows for the analysis of functional domains

Rothblum, L.; Rothblum, K.; McNamar, R.; Abu-Adas, Z.

10.1101/780361 — molecular biology — Posted on 2019-09-24

769 Genomic characterization and computational phenotyping of nitrogen-fixing bacteria isolated from Colombian sugarcane fields

Medina-Cordoba, L. K.; Chande, A. T.; Rishishwar, L.; Mayer, L. W.; Valderrama-Aguirre, L. C.; Valderrama-Aguirre, A.; Gaby, J. C.; Kostka, J. E.; Jordan, I. K.

10.1101/780809 — microbiology — Posted on 2019-09-24

770 Microbiome Stability with Chronic SIV Infection in AIDS-resistant Sooty Mangabeys

Bochart, R. M.; Tharp, G. K.; Jean, S.; Upadhyay, A. A.; Crane, M. M.; Vanderford, T. H.; Ortiz, A. M.; Ericsen, A.; Cohen, J.; Bosinger, S. E.

10.1101/780825 — immunology — Posted on 2019-09-24

771 Towards a Fine-scale Population Health Monitoring System

Belbin, G. M.; Wenric, S.; Cullina, S.; Glicksberg, B. S.; Moscati, A.; Wojcik, G. L.; Shemirani, R.; Beckmann, N. D.; Cohain, A.; Sorokin, E. P.; Park, D. S.; Ambite, J.-L.; Ellis, S.; Auton, A.; CBIPM Genomics Team, ; Regeneron Genetics Center, ; Bottinger, E. P.; Cho, J. H.; Loos, R. J.; Abul-Husn, N. S.; Zaitlen, N. A.; Gignoux, C. R.; Kenny, E. E.

10.1101/780668 — genomics — Posted on 2019-09-24

772 Seasonal influenza circulation patterns and projections for September 2019 to September 2020

Bedford, T.; Huddleston, J.; Potter, B.; Neher, R.

10.1101/780627 — evolutionary biology — Posted on 2019-09-24

773 Large single-locus effects for maturation timing are mediated via condition variation in Atlantic salmon

Debes, P. V.; Piavachenko, N.; Ruokolainen, A.; Ovaskainen, O.; Moustakas-Verho, J. E.; Parre, N.; Aykanat, T.; Erkinaro, J.; Primmer, C. R.

10.1101/780437 — evolutionary biology — Posted on 2019-09-24

774 United States wildlife and wildlife product imports from 2000-2014

Eskew, E. A.; White, A. M.; Ross, N.; Smith, K. M.; Smith, K. F.; Rodriguez, J. P.; Zambrana-Torrelio, C.; Karesh, W. B.; Daszak, P.

10.1101/780197 — ecology — Posted on 2019-09-24

775 The ubiquitin-proteasome system productively adapts to proteasomal and protein folding stressors via independent mechanisms

Work, J. J.; Brandman, O.

10.1101/780676 — cell biology — Posted on 2019-09-24

776 HYPK scaffolds the Nedd8 and LC3 proteins to initiate the formation of autophagosome around the poly-neddylated huntingtin exon1 aggregates

Ghosh, D. K.; Roy, A.; Ranjan, A.

10.1101/780379 — cell biology — Posted on 2019-09-24

777 Development Of C-Type Lectin Oriented Surfaces For High Avidity Glycoconjugates: Towards Mimicking Multivalent Interactions On The Cell Surface

Porkolab, V.; Pifferi, C.; Sutkeviciute, I.; Ordanini, S.; Taouai, M.; Thepaut, M.; Vives, C.; Benazza, M.; Bernardi, A.; Renaudet, O.; Fieschi, F.

10.1101/780452 — biochemistry — Posted on 2019-09-24

778 Simultaneous discovery of candidate imprinted genes and Imprinting Control Regions in the mouse genome

Bina, M.; Wyss, P.

10.1101/780551 — genomics — Posted on 2019-09-24

779 Long Read based Human Genomic Structural Variation Detection with cuteSV

Jiang, T.; Liu, B.; Jiang, Y.; Gao, Y.; Cui, Z.; Liu, Y.; Wang, Y.

10.1101/780700 — bioinformatics — Posted on 2019-09-24

780 Range extension of Cryptonanus agricolai (DIDELPHIMORPHIA, DIDELPHIDAE) and first record in the Atlantic Forest core

Guerra, E. B.; Costa, L. P.

10.1101/774752 — zoology — Posted on 2019-09-24

781 Predictive Metagenomic Analysis of Autoimmune Disease Identifies Robust Autoimmunity and Disease Specific Signatures

Volkova, A.; Ruggles, K. V.

10.1101/779967 — systems biology — Posted on 2019-09-24

782 Neuroinflammation and EIF2 signaling persist in an HiPSC tri-culture model of HIV infection despite antiretroviral treatment

Ryan, S. K.; Gonzalez, M. V.; Garifallou, J. P.; Bennett, F. C.; Williams, K. S.; Hakonarson, H. K.; Anderson, S. A.; Jordan-Sciutto, K. L.

10.1101/779025 — pathology — Posted on 2019-09-24

783 Nicotine dependence (trait) and acute nicotinic stimulation (state) modulate attention but not cognitive control: converging fMRI evidence from Go-Nogo and Flanker tasks

Lesage, E.; Sutherland, M.; Ross, T. J.; Salmeron, B. J.; Stein, E. A.

10.1101/770651 — neuroscience — Posted on 2019-09-24

784 Cannabis, Connectivity, and Coming of Age: Associations between Cannabis Use and Anterior Cingulate Cortex Connectivity during the Transition to Adulthood

Lichenstein, S. D.; Shaw, D.; Forbes, E. E.

10.1101/776138 — neuroscience — Posted on 2019-09-24

785 Behavioural relevance of spontaneous, transient brain network interactions in fMRI

Vidaurre, D.; Llera Arenas, A.; Smith, S. M.; Woolrich, M. W.

10.1101/779736 — neuroscience — Posted on 2019-09-24

786 Maturation of Neuronal Activity in Caudalized Human Brain Organoids

Molchanova, S. M.; Cherepkova, M.; Abdurakhmanova, S.; Kuivanen, S.; Pörsti, E. A. J.; Pöhö, P. A.; Teppo, J. S.; Saarimäki-Vire, J.; Kvist, J.; Balboa, D.; Domanskyi, A.; Gainetdinov, R. R.; Piepponen, P.; Varjosalo, M.; Kostiainen, R.; Vapalahti, O.; Taira, T. P.; Otonkoski, T.; Bespalov, M. M.

10.1101/779355 — neuroscience — Posted on 2019-09-24

787 Revealing the Temporal Dynamics in Non-invasive Electrophysiological recordings with Topography-based Analyses

Wang, X.; Zhu, H.; Tian, X.

10.1101/779546 — neuroscience — Posted on 2019-09-24

788 The E3 ubiquitin ligase TRAF6 is a novel interacting protein of amyotrophic lateral sclerosis-linked misfolded SOD1

Semmler, S.; Gagne, M.; Garg, P.; Pickles, S. R.; Baudouin, C.; Hamon-Keromen, E.; Destroismaisons, L.; Khalfallah, Y.; Chaineau, M.; Caron, E.; Bayne, A. N.; Trempe, J.-F.; Cashman, N. R.; Star, A. T.; Haqqani, A. S.; Durcan, T. M.; Meiering, E. M.; Robertson, J.; Grandvaux, N.; Plotkin, S. S.; McBride, H. M.; Vande Velde, C.

10.1101/780460 — neuroscience — Posted on 2019-09-24

789 Swimming motility and chemotaxis control the spatial organization, persistence, and inflammatory activity of a model intestinal pathobiont

Wiles, T. J.; Schlomann, B. H.; Wall, E. S.; Betancourt, R.; Parthasarathy, R.; Guillemin, K.

10.1101/779983 — microbiology — Posted on 2019-09-24

790 Dynamics of genetic code evolution: The emergence of universality

Argyriadis, J.-A. I. A.; He, Y.-H.; Jejjala, V.; Minic, D.

10.1101/779959 — genomics — Posted on 2019-09-24

791 Profiling APOL1 Nephropathy Risk Variants in Genome-Edited Kidney Organoids with Single-Cell Transcriptomics

Liu, E.; Radmanesh, B.; Chung, B. H.; Donnan, M. D.; Yi, D.; Dadi, A.; Smith, K. D.; Himmelfarb, J.; Li, M.; Freedman, B. S.; Lin, J.

10.1101/780684 — genomics — Posted on 2019-09-24

792 Genome-wide association study identifies 32 novel breast cancer susceptibility loci from overall and subtype-specific analyses

Zhang, H.; Ahearn, T.; Lecarpentier, J.; Barnes, D.; Beesley, J.; Qi, G.; Jiang, X.; O'Mara, T. A.; Zhao, N.; Bolla, M. K.; Dunning, A. M.; Dennis, J.; Wang, Q.; Abu Ful, Z.; Aittomaki, K.; Andrulis, I. L.; Anton-Culver, H.; Arndt, V.; Aronson, K. J.; Arun, B. K.; Auer, P. L.; Azzollini, J.; Barrowdale, D.; Becher, H.; Beckmann, M. W.; Behrens, S.; Benitez, J.; Bermisheva, M.; Bialkowska, K.; Blanco, A.; Blomqvist, C.; Bogdanova, N. V.; Bojesen, S. E.; Bonanni, B.; Bondavalli, D.; Borg, A.; Brauch, H.; Brenner, H.; Briceno, I.; Broeks, A.; Brucker, S. Y.; Bruning, T.; Burwinkel, B.; Buys, S.

10.1101/778605 — genetics — Posted on 2019-09-24

793 Horizontal gene transfer to a defensive symbiont with a reduced genome amongst a multipartite beetle microbiome

Waterworth, S. C.; Florez, L. V.; Rees, E. R.; Hertweck, C.; Kaltenpoth, M.; Kwan, J. C.

10.1101/780619 — evolutionary biology — Posted on 2019-09-24

794 Tissue ingrowth markedly reduces mechanical anisotropy and stiffness in fibre direction of highly aligned electrospun polyurethane scaffolds

Krynauw, H.; Buescher, J.; Koehne, J.; Verrijt, L.; Limbert, G.; Davies, N. H.; Bezuidenhout, D.; Franz, T.

10.1101/779942 — bioengineering — Posted on 2019-09-24

795 Epigenomic analysis of Parkinson’s disease neurons identifies Tet2 loss as neuroprotective

Marshall, L.; Killinger, B.; Li, P.; Ensink, E.; Li, K.; Cui, W.; Lubben, N.; Weiland, M.; Gordevicius, J.; Coetzee, G. A.; Jovinge, S.; Labrie, V.

10.1101/779785 — neuroscience — Posted on 2019-09-24

796 Real brains in virtual worlds: Validating a novel oddball paradigm in virtual reality

Kuziek, J. W. P.; Redman, E. X.; Tayem, A. R.; Burrell, J.; Murray, J.; Reinan, J.; Sipolins, A.; Mathewson, K. E.

10.1101/749192 — neuroscience — Posted on 2019-09-24

797 Molecular determinants of chaperone interactions on MHC-I for folding and antigen repertoire selection

McShan, A. C.; Devlin, C. A.; Overall, S. A.; Park, J.; Toor, J. S.; Moschidi, D.; Flores-Solis, D.; Choi, H.; Tripathi, S.; Procko, E.; Sgourakis, N. G.

10.1101/779777 — immunology — Posted on 2019-09-24

798 Global range contractions of mammals, birds and amphibians from 10,000 BC to 2100 AD.

Beyer, R.; Manica, A.

10.1101/779801 — ecology — Posted on 2019-09-24

799 A Suboptimal Model Explained the Spatiotemporal Control of Human Eye Movements in Visual Search

Zhou, Y.; Yu, Y.

10.1101/779652 — neuroscience — Posted on 2019-09-24

800 A molecular barcode and online tool to identify and map imported infection with Plasmodium vivax

Trimarsanto, H.; Amato, R.; Pearson, R. D.; Sutanto, E.; Noviyanti, R.; Marfurt, J.; Pava, Z.; Echeverry, D. F.; Lopera-Mesa, T. M.; Montenegro, L. M.; Tobon-Castano, A.; Grigg, M. J.; Barber, B.; William, T.; Anstey, N. M.; Getachew, S.; Petros, B.; Aseffa, A.; Assefa, A.; Ghulam Rahim, A.; Nguyen Hoang, C.; Tran Tinh, H.; Alam, M. S.; Khan, W. A.; Ley, B.; Thriemer, K.; Wangchuck, S.; Hamedi, Y.; Adam, I.; Liu, Y.; Gao, Q.; Sriprawat, K.; Ferreira, M. U.; Barry, A.; Mueller, I.; Drury, E.; Goncalves, S.; Simpson, V.; Miotto, O.; Miles, A. J.; White, N. J.; Nosten, F.; Kwiatkowski, D.; Price,

10.1101/776781 — molecular biology — Posted on 2019-09-24

801 Allele specific expression and gene regulation explain transgressive thermal tolerance in non-native hybrids of the endangered California tiger salamander (Ambystoma californiense)

Cooper, R. D.; Shaffer, H. B.

10.1101/772020 — genomics — Posted on 2019-09-24

802 Predictability of the antigenic evolution of human influenza A H3 viruses

AGUAS, R.; Ferguson, N.

10.1101/770446 — evolutionary biology — Posted on 2019-09-24

803 A systems approach delivers a functional microRNA catalog and expanded targets for seizure suppression in temporal lobe epilepsy

Veno, M. T.; Reschke, C. R.; Morris, G.; Connolly, N. M.; Su, J.; Yan, Y.; Engel, T.; Jimenez-Mateos, E. M.; Harder, L. M.; Pultz, D.; Haunsberger, S. J.; Pal, A.; Norwood, B. A.; Costard, L. S.; Neubert, V.; Del Gallo, F.; Salvetti, B.; Vangoor, V. R.; Sanz Rodriguez, A.; Muilu, J.; Fabene, P. F.; Pasterkamp, R. J.; Prehn, J. H.; Schorge, S.; Andersen, J. S.; Rosenow, F.; Bauer, S.; Kjems, J.; Henshall, D. C.

10.1101/777144 — neuroscience — Posted on 2019-09-24

804 The Tolman-Eichenbaum Machine: Unifying space and relational memory through generalisation in the hippocampal formation

Whittington, J. C.; Muller, T. H.; Mark, S.; Barry, C.; Burgess, N.; Behrens, T. E.

10.1101/770495 — neuroscience — Posted on 2019-09-24

805 Faces under continuous flash suppression capture attention faster than objects, but without a face evoked steady-state visual potential: Is curvilinearity responsible for the behavioral effect?

Engell, A. D.; Quillian, H.

10.1101/778373 — neuroscience — Posted on 2019-09-24

806 Topography and Land Use Modulate Hydrological and Nutrient Export Dynamics in Andean Streams

Sosnovsky, A.; Lallement, M. E.; Rechencq, M.; Zattara, E. E.; Fernandez, M. V.; Suarez, M. J.; Leiva, S.; Cantet, R. J.

10.1101/742411 — ecology — Posted on 2019-09-24

807 Local human movement patterns and land use impact exposure to zoonotic malaria in Malaysian Borneo

Fornace, K. M.; Alexander, N.; Abidin, T. R.; Brock, P. M.; Chua, T. H.; Vythilingam, I.; Ferguson, H. M.; Manin, B. O.; Wong, M. L.; Ng, S. H.; Cox, J.; Drakeley, C. J.

10.1101/734590 — ecology — Posted on 2019-09-24

808 Mutation of CFAP57 causes primary ciliary dyskinesia by disrupting theasymmetric targeting of a subset of ciliary inner dynein arms

Bustamante Marin, X.; Horani, A.; Stoyanova, M.; Charng, W.-L.; Bottier, M.; Sears, P.; Daniels, L. A.; Bowen, H.; Conrad, D.; Knowles, M.; Ostrowski, L. E.; Zariwala, M. A.; Dutcher, S. K.

10.1101/773028 — genetics — Posted on 2019-09-24

809 Exploring the design space of recombinase logic circuits.

Guiziou, S.; Perution-Kihli, G.; Ulliana, F.; Leclere, M.; Bonnet, J.

10.1101/711374 — synthetic biology — Posted on 2019-09-24

810 jULIEs: extracellular probes for recordings and stimulation in the structurally and functionally intact mouse brain

Racz, R. R.; Kollo, M.; Racz, G.; Bulz, C.; Ackels, T.; Warner, T.; Wray, W. A.; Kiskin, N.; Chen, C.; Ye, Z.; de Hoz, L.; Rancz, E. A.; Schaefer, A. T.

10.1101/721548 — neuroscience — Posted on 2019-09-24

811 Developmental Genome-Wide DNA Methylation Asymmetry Between Mouse Placenta and Embryo

Legault, L.-M.; Doiron, K.; Lemieux, A.; Caron, M.; Chan, D.; Lopes, F. L.; Bourque, G.; Sinnett, D.; McGraw, S.

10.1101/718247 — developmental biology — Posted on 2019-09-24

812 An R Package for Divergence Analysis of Omics Data

Dinalankara, W.; Ke, Q.; Geman, D.; Marchionni, L.

10.1101/720391 — bioinformatics — Posted on 2019-09-24

813 A canstatin-derived peptide provides insight into the role of Capillary Morphogenesis Gene 2 in angiogenic regulation and matrix uptake

Finnell, J.; Tsang, T.-M.; Cryan, L.; Garrard, S.; Lee, S. L.; Ackroyd, P. C.; Rogers, M.; Christensen, K.

10.1101/705459 — biochemistry — Posted on 2019-09-24

814 How well do crop models predict phenology, with emphasis on the effect of calibration?

Wallach, D.; Palosuo, T.; Thorburn, P.; Seidel, S. J.; Gourdain, E.; Asseng, S.; Basso, B.; Buis, S.; Crout, N.; Dibari, C.; Dumont, B.; Ferrise, R.; Gaiser, T.; Garcia, C.; Gayler, S.; Ghahramani, A.; Hochman, Z.; Hoek, S.; Horan, H.; Hoogenboom, G.; Huang, M.; Jabloun, M.; Jing, Q.; Justes, E.; Kersebaum, K. C.; Klosterhalfen, A.; Launay, M.; Luo, Q.; Maestrini, B.; Mielenz, H.; Moriondo, M.; Nariman Zadeh, H.; Olesen, J. E.; Poyda, A.; Priesack, E.; Pullens, J. W. M.; Budong, Q.; Schuetze, N.; Shelia, V.; Souissi, A.; Specka, X.; Srivastava, A. K.; Stella, T.; Streck, T.; Trombi, G.; Wallor

10.1101/708578 — plant biology — Posted on 2019-09-24

815 Adult dentate gyrus neurogenesis: a functional model

Gozel, O.; Gerstner, W.

10.1101/704791 — neuroscience — Posted on 2019-09-24

816 TRIBES: A user-friendly pipeline for relatedness detection and disease gene discovery

Twine, N. A.; Szul, P.; Henden, L.; McCann, E. P.; Blair, I. P.; Williams, K. L.; Bauer, D. C.

10.1101/686253 — bioinformatics — Posted on 2019-09-24

817 IDR2D identifies reproducible genomic interactions

Krismer, K.; Guo, Y.; Gifford, D. K.

10.1101/691295 — bioinformatics — Posted on 2019-09-24

818 Control of Intracellular Molecular Networks Using Algebraic Methods

Sordo Vieira, L.; Laubenbacher, R. C.; Murrugarra, D.

10.1101/682989 — systems biology — Posted on 2019-09-24

819 Propagating activity in neocortex, mediated by gap-junctions and modulated by extracellular potassium

Papasavvas, C. A.; Parrish, R. R.; Trevelyan, A. J.

10.1101/669226 — neuroscience — Posted on 2019-09-24

820 Accurate and efficient discretisations for stochastic models providing near agent-based spatial resolution at low computational cost

Fadai, N. T.; Baker, R. E.; Simpson, M. J.

10.1101/686030 — biophysics — Posted on 2019-09-24

821 Neutrophils promote CXCR3-dependent itch in the development of atopic dermatitis

Walsh, C. M.; Hill, R. Z.; Schwendinger-Schreck, J.; Deguine, J.; Brock, E. C.; Kucirek, N.; Rifi, Z.; Wei, J.; Gronert, K.; Brem, R. B.; Barton, G. M.; Bautista, D. M.

10.1101/653873 — immunology — Posted on 2019-09-24

822 Paragraph: A graph-based structural variant genotyper for short-read sequence data

Chen, S.; Krusche, P.; Dolzhenko, E.; Sherman, R. M.; Petrovski, R.; Schlesinger, F.; Kirsche, M.; Bentley, D. R.; Schatz, M. S.; Sedlazeck, F. J.; Eberle, M. A.

10.1101/635011 — genomics — Posted on 2019-09-24

823 Combinatorial prediction of gene-marker panels from single-cell transcriptomic data.

Delaney, C.; Schnell, A.; Cammarata, L.; Yao-Smith, A.; Regev, A.; Kuchroo, V. K.; Singer, M.

10.1101/655753 — bioinformatics — Posted on 2019-09-24

824 Changes in protein function underlies the disease spectrum in patients with CHIP mutations

Madrigal, S. C.; McNeil, Z.; Sanchez-Hodge, R.; Shi, C.-h.; Patterson, C.; Scaglione, K. M.; Schisler, J. C.

10.1101/620591 — neuroscience — Posted on 2019-09-24

825 Alternative pathway androgen biosynthesis and human fetal female virilization

Reisch, N.; Taylor, A. E.; Nogueiras, E. F.; Asby, D. J.; Dhir, V.; Berry, A.; Krone, N. P.; Auchus, R. J.; Shackleton, C. H.; Hanley, N. A.; Arlt, W.

10.1101/609289 — developmental biology — Posted on 2019-09-24

826 Generalizing to generalize: humans flexibly switch between compositional and conjunctive structures during reinforcement learning

Franklin, N. T.; Frank, M. J.

10.1101/547406 — neuroscience — Posted on 2019-09-24

827 Herpesvirus infection reduces Pol II occupancy of host promoters but spares viral promoters

Hartenian, E.; Glaunsinger, B.

10.1101/585984 — microbiology — Posted on 2019-09-24

828 Illuminating the dark side of the human transcriptome with TAMA Iso-Seq analysis

Kuo, R. I.; Cheng, Y.; Smith, J.; Archibald, A. L.; Burt, D. W.

10.1101/780015 — genomics — Posted on 2019-09-24

829 Structural color in Junonia butterflies evolves by tuning scale lamina thickness

Thayer, R. C.; Allen, F. I.; Patel, N. H.

10.1101/584532 — evolutionary biology — Posted on 2019-09-24

830 scGEAToolbox: a Matlab toolbox for single-cell RNA sequencing data analysis

Cai, J. J.

10.1101/544163 — bioinformatics — Posted on 2019-09-24

831 Defining the relevant combinatorial space of the PKC/CARD-CC signal transduction nodes

Staal, J.; Driege, Y.; Haegman, M.; Iliaki, S.; Vanneste, D.; Affonina, I. S.; Braun, H.; Beyaert, R.

10.1101/228767 — systems biology — Posted on 2019-09-24

832 Regulation of distinct STAT3 dynamics in pro (IFNγ) and anti (IL-10) inflammatory pathways and in their cross-talk: insights from a data-driven model

Sarma, U.; Maiti, M.; NAIR, A.; BHADANGE, S.; Srivastava, A.; Saha, B.; Mukherjee, D.

10.1101/425868 — systems biology — Posted on 2019-09-24

833 When less is more: enhanced statistical learning of non-adjacent dependencies after disruption of bilateral DLPFC

Ambrus, G. G.; Vekony, T.; Janacsek, K.; Trimborn, A. B. C.; Kovacs, G.; Nemeth, D.

10.1101/198515 — neuroscience — Posted on 2019-09-24

834 A very fast time scale of human motor adaptation: within movement adjustments of internal representations during reaching

Crevecoeur, F.; Thonnard, J.-L.; Lefevre, P.

10.1101/269134 — neuroscience — Posted on 2019-09-24

835 Single Cell Spatial Chromatin Analysis of Fixed Immunocytochemically Identified Neuronal Cells

Lee, J.; Lu, Y.; Wang, J.; Li, J.; Fisher, S.; Nordren, C. E.; Rosario, J.; Anderson, S.; Ulyanova, A.; Brem, S.; Chen, H. I.; Wolf, J.; Grady, M. S.; Healy, M.; Kim, J.; Eberwine, J.

10.1101/780387 — neuroscience — Posted on 2019-09-24

836 Genes Affecting Vocal and Facial Anatomy Went Through Extensive Regulatory Divergence in Modern Humans

Gokhman, D.; Nissim-Rafinia, M.; Agranat-Tamir, L.; Housman, G.; Garcia-Perez, R.; Mallick, S.; Nieves-Colon, M.; Li, H.; Alpaslan-Roodenberg, S.; Novak, M.; Gu, H.; Ferrando-Bernal, M.; Gelabert, P.; Lipende, I.; Kondova, I.; Bontrop, R.; Quillen, E. E.; Meissner, A.; Mjungu, D.; Kandel, L.; Liebergall, M.; Prada, M. E.; Vidal, J. M.; Stone, A. C.; Yakir, B.; Lalueza-Fox, C.; Pinhasi, R.; Reich, D.; Marques-Bonet, T.; Meshorer, E.; Carmel, L.

10.1101/106955 — evolutionary biology — Posted on 2019-09-24

837 The Mosquito Electrocuting Trap As An Exposure-Free Method For Measuring Human Biting Rates By Aedes Mosquito Vectors

Ortega-Lopez, L. D.; Pondeville, E. D.; Kohl, A.; Leon, R.; Pazmino Betancourth, M.; Almire, F.; Torres Valencia, S.; Saldarriaga, S.; Ferguson, H. M.

10.1101/774596 — ecology — Posted on 2019-09-24

838 High density Novel Wolbachia strains in Anopheles species from Guinea

Jeffries, C. L.; Cansado Utrilla, C.; Stica, C.; Walker, T.

10.1101/772855 — ecology — Posted on 2019-09-24

839 PKCα-dependent interaction of otoferlin and calbindin: evidence for regulation of endocytosis in inner hair cells

P. Cepeda, A.; Al-Moyed, H.; Lenz, C.; Urlaub, H.; Reisinger, E.

10.1101/779520 — neuroscience — Posted on 2019-09-24

840 Influence of human cytomegalovirus glycoprotein O polymorphism on the inhibitory effect of soluble forms of trimer- and pentamer-specific entry receptors

Brait, N.; Stögerer, T.; Kalser, J.; Adler, B.; Kunz, I.; Benesch, M.; Kropff, B.; Mach, M.; Puchhammer-Stoeckl, E.; Goerzer, I.

10.1101/778241 — microbiology — Posted on 2019-09-24

841 The 5’-NAD cap of RNAIII modulates toxin production in Staphylococcus aureus isolates

Morales-Filloy, H. G.; Zhang, Y.; Nübel, G.; George, S. E.; Korn, N.; Wolz, C.; Jäschke, A.

10.1101/778233 — microbiology — Posted on 2019-09-24

842 CNVmap: a method and software to detect copy number variants from linkage mapping data

Falque, M.; Jebreen, K.; Paux, E.; Knaak, C.; Mezmouk, S.; Martin, O. C.

10.1101/778753 — genetics — Posted on 2019-09-24

843 The Intestinal Microbiota Contributes To The Control Of Highly Pathogenic H5N9 Influenza Virus Replication In Ducks

Figueroa, T.; Bessiere, P.; Coggon, A.; van der Woude, R.; Delverdier, M.; Verheije, M. H.; de Vries, R. P.; Volmer, R.

10.1101/778258 — microbiology — Posted on 2019-09-24

844 Supervised learning of protein thermal stability using sequence mining and distribution statistics of network centrality

Sharma, A.; Bagler, G.; Bera, D.

10.1101/777177 — bioinformatics — Posted on 2019-09-24

845 Rapid accumulation of mutations in growing mycelia of a hypervariable fungus Schizophyllum commune

Bezmenova, A. V.; Zvyagina, E. A.; Fedotova, A. V.; Kasianov, A. S.; Neretina, T. V.; Penin, A. A.; Bazykin, G. A.; Kondrashov, A. S.

10.1101/781310 — evolutionary biology — Posted on 2019-09-24

846 PICH promotes SUMOylated TopoisomeraseIIα dissociation from mitotic centromeres for proper chromosome segregation

Hassebroek, V.; Park, H.; Pandey, N.; Lerbakken, B. T.; Aksenova, V.; Arnaoutov, A.; Dasso, M.; Azuma, Y.

10.1101/781401 — cell biology — Posted on 2019-09-24

847 Nanomorphological and mechanical reconstruction of mesenchymal stem cells during early apoptosis detected by atomic force microscopy

Su, X.; Wang, J.; Bao, G.; Zhou, H.; Liu, L.; Zheng, Q.; Guo, M.; Zhang, J.

10.1101/780759 — cell biology — Posted on 2019-09-24

848 Structure of HIV-2 Nef reveals unique features distinct from HIV-1 involved in immune regulation

Hirao, K.; Andrews, S.; Kuroki, K.; Kusaka, H.; Tadokoro, T.; Kita, S.; Ose, T.; Rowland-Jones, S.; Maenaka, K.

10.1101/779439 — biophysics — Posted on 2019-09-24

849 Optogenetic rescue of a developmental patterning mutant

Johnson, H. E.; Shvartsman, S. Y.; Toettcher, J. E.

10.1101/776120 — developmental biology — Posted on 2019-09-24

850 PCH-2 collaborates with CMT-1 to proofread meiotic homolog interactions

Giacopazzi, S.; Vong, D.; Devigne, A.; Bhalla, N.

10.1101/780254 — cell biology — Posted on 2019-09-24

851 Ser/Thr kinase Trc controls neurite outgrowth in Drosophila by modulating microtubule-microtubule sliding

Gelfand, V. I.; Norkett, R.; del Castillo, U.; Lu, W.

10.1101/780999 — cell biology — Posted on 2019-09-24

852 Design and optimization of a cell-free atrazine biosensor

Silverman, A. D.; Akova, U.; Alam, K. K.; Jewett, M. C.; Lucks, J. B.

10.1101/779827 — synthetic biology — Posted on 2019-09-24

853 Interneuron-specific plasticity at parvalbumin and somatostatin inhibitory synapses onto CA1 pyramidal neurons shapes hippocampal output

Udakis, M.; Pedrosa, V.; Chamberlain, S. E. L.; Clopath, C.; Mellor, J. R.

10.1101/774562 — neuroscience — Posted on 2019-09-24

854 Chikungunya virus infection impairs osteogenic differentiation of bone marrow-derived mesenchymal stem cells

Roy, E.; Shi, W.; Duan, B.; Reid, S. P.

10.1101/780791 — microbiology — Posted on 2019-09-24

855 Cell-to-cell variability in AMPK activation reveals autonomous cycles in cellular energy balance

Kosaisawe, N.; Sparta, B.; Pargett, M.; Teragawa, C.; Albeck, J. G.

10.1101/780023 — cell biology — Posted on 2019-09-24

856 A viral ring nuclease anti-CRISPR subverts type III CRISPR immunity

Athukoralage, J. S.; McMahon, S.; Zhang, C.; Gruschow, S.; Graham, S.; Krupovic, M.; Whitaker, R. J.; Gloster, T.; White, M. F.

10.1101/778746 — biochemistry — Posted on 2019-09-24

857 Micronutrient intake and prevalence of micronutrient inadequacy among women (15-49 y) and children (6-59 mo) in South Kivu and Kongo Central, Democratic Republic of Congo (DRC)

Moumin, N. A.; Angel, M. D.; Karakochuk, C. D.; Michaux, K. D.; Moursi, M.; Sawadogo, K. A. A.; Foley, J.; Hawes, M. D.; Whitfield, K. C.; Tugirimana, P. L.; Bahizire, E.; Akilimali, P. Z.; Boy, E.; Green, T. J.

10.1101/780080 — physiology — Posted on 2019-09-23

858 Stochastic optimal open-loop control as a theory of force and impedance planning via muscle co-contraction

Berret, B.; Jean, F.

10.1101/780056 — neuroscience — Posted on 2019-09-23

859 Proteasomal Inhibition Triggers Viral Oncoprotein Degradation via Autophagy-Lysosomal Pathway

Gain, C.; Malik, S.; Bhattacharjee, S.; Ghosh, A.; Robertson, E. S.; Das, B. B.; Saha, A.

10.1101/780171 — cancer biology — Posted on 2019-09-23

860 Modeled buoyancy of eggs and larvae of the deep-sea shrimp Aristeus antennatus (Crustacea: Decapoda) in the northwestern Mediterranean Sea

CLAVEL-HENRY, M.; Sole, J.; Kristiansen, T.; Bahamon, N.; Rotllant, G.; Company, J. B.

10.1101/780247 — biophysics — Posted on 2019-09-23

861 High throughput screening and identification of coagulopathic snake venom proteins and peptides using nanofractionation and proteomics approaches

Slagboom, J.; Mladic, M.; Xie, C.; Vonk, F.; Somsen, G.; Casewell, N.; Kool, J.

10.1101/780155 — pharmacology and toxicology — Posted on 2019-09-23

862 MicroRNA and Gene Expression Analysis on Placenta Tissue: An Approach to Understanding Obstetric Antiphospholipid Syndrome at the Molecular Level

asral wirda, a. a. B.; Mohamad, M. A.; Mohd Manzor, N. F. B.; Suhiman, M. S.; Sathar, J.; Abdul Rahman, H. B.; Masri, M. B.; Abdul Rahim, N. S. B.; Abdul Hamid, N. B.; Mohamad, N. N. B.

10.1101/780114 — pathology — Posted on 2019-09-23

863 Activity manipulation of an excitatory interneuron, during an embryonic critical period, alters network tuning of the Drosophila larval locomotor circuit

Giachello, C. N. G.; Fan, Y. N.; Landgraf, M.; Baines, R. A.

10.1101/780221 — neuroscience — Posted on 2019-09-23

864 Selective neurodevelopmental and behavioral deficits in Scrib conditional knock-out mice recapitulate some phenotypes associated with the Verheij/8q23.4 deletion syndrome.

Ezan, J.; Moreau, M. M.; Mamo, T. M.; Shimbo, M.; Decroo, M.; Richter, M.; Peyroutou, R.; Rachel, R.; Tissir, F.; Calderon de Anda, F.; Sans, N.; Montcouquiol, M.

10.1101/780130 — neuroscience — Posted on 2019-09-23

865 Inhibition of Invasive Salmonella by Orally Administered IgA and IgG Monoclonal Antibodies

Richards, A. F.; Doering, J.; Lozito, S. A.; Varrone, J.; Pauly, M.; Whaley, K.; Zeitlin, L.; Mantis, N. J.

10.1101/780148 — immunology — Posted on 2019-09-23

866 Ecological stoichiometry and adult fat reserves suggest bet-hedging in Drosophila melanogaster development

Krama, T.; Krams, R.; Joers, P.; Munkevics, M.; Trakimas, G.; Luoto, S.; Eichler, S.; Butler, D. M.; Merivee, E.; Must, A.; Rantala, M. J.; Contreras-Garduno, J.; Krams, I.

10.1101/780098 — evolutionary biology — Posted on 2019-09-23

867 Pharmacogenetic variants associated with off-target adverse drug reactions are mostly predicted to be benign

Andrews, T. D.; McConnell, H.; Field, M. A.

10.1101/780213 — bioinformatics — Posted on 2019-09-23

868 High Plasmodium infection intensity in naturally infected malaria vectors in Africa

Bompard, A.; Da, D. F.; Yerbanga, S. R.; Morlais, I.; Awono-Ambene, P. H.; Dabire, R. K.; Ouedraogo, J. B.; Lefevre, T.; Churcher, T.; Cohuet, A.

10.1101/780064 — ecology — Posted on 2019-09-23

869 Prenatal exposure to the probiotic Lactococcus lactis decreases anxiety-like behavior and modulates cortical cytoarchitecture in a sex specific manner.

Surzenko, N.; Pjetri, E.; Hauser, J.; Munson, C. A.; Friday, W. B.; Mitchell, E. S.

10.1101/780072 — neuroscience — Posted on 2019-09-23

870 Thalamocortical network connectivity controls spatiotemporal dynamics of cortical and thalamic traveling waves

Bhattacharya, S.; Le Cauchois, M. B.; Iglesias, P. A.; Chen, Z. S.

10.1101/780239 — neuroscience — Posted on 2019-09-23

871 Closed mitosis requires local disassembly of the nuclear envelope

Dey, G.; Culley, S.; Curran, S. A.; Henriques, R.; Kukulski, W.; Baum, B.

10.1101/779769 — cell biology — Posted on 2019-09-23

872 A reverse chemical ecology approach to explore wood natural durability

Perrot, T.; Salzet, G.; Amusant, N.; Beauchene, J.; Gerardin, P.; Dumarcay, S.; Sormani, R.; Morel-Rouhier, M.; Gelhaye, E.

10.1101/779629 — microbiology — Posted on 2019-09-23

873 A novel terpene synthase produces an anti-aphrodisiac pheromone in the butterfly Heliconius melpomene

Darragh, K.; Orteu, A.; Byers, K. J. R. P.; Szczerbowski, D.; Warren, I. A.; Rastas, P.; Pinharanda, A. L.; Davey, J.; Garza, S. F.; Abondano Almeida, D.; Merrill, R. M.; McMillan, W. O.; Schulz, S.; Jiggins, C. D.

10.1101/779678 — biochemistry — Posted on 2019-09-23

874 Stochastic activation and bistability in a Rab GTPase regulatory network.

Bezeljak, U.; Loya, H.; Kaczmarek, B.; Saunders, T. E.; Loose, M.

10.1101/776567 — systems biology — Posted on 2019-09-23

875 Evolution of metastases-associated fibroblasts in the lung microenvironment is driven by stage-specific transcriptional plasticity

Shani, O.; Raz, Y.; Megides, O.; Shacham, H.; Cohen, N.; Silverbush, D.; Monteran, L.; Sharan, R.; Tsarfaty, I.; Erez, N.

10.1101/778936 — cancer biology — Posted on 2019-09-23

876 Satellite DNA landscapes after allotetraploidisation of quinoa (Chenopodium quinoa) reveal unique A and B subgenomes

Heitkam, T.; Weber, B.; Walter, I.; Ost, C.; Schmidt, T.

10.1101/774828 — plant biology — Posted on 2019-09-23

877 Cortical auditory distance representation based on direct-to-reverberant energy ratio

Kopco, N.; Doreswamy, K. K.; Huang, S.; Rossi, S.; Ahveninen, J.

10.1101/769380 — neuroscience — Posted on 2019-09-23

878 Internalizing Symptoms Associate with the Pace of Epigenetic Aging in Childhood

Tollenaar, M. S.; Beijers, R.; Garg, E.; Nguyen, T. T. T.; Lin, D. T. S.; MacIsaac, J. L.; Shalev, I.; Kobor, M. S.; Meaney, M. J.; O'Donnell, K. J.; de Weerth, C.

10.1101/776526 — genetics — Posted on 2019-09-23

879 Resegmentation is an ancestral feature of the gnathostome vertebral skeleton

Criswell, K. E.; Gillis, A.

10.1101/779710 — developmental biology — Posted on 2019-09-23

880 Substrate recognition by the Pseudomonas aeruginosa EF-Tu methyltransferase EftM

Kuiper, E. G.; Dey, D.; LaMore, P. A.; Owings, J. P.; Prezioso, S. M.; Goldberg, J. B.; Conn, G. L.

10.1101/773556 — biochemistry — Posted on 2019-09-23

881 Toxicogenomic identification of repositioned therapy for a monogenic disease

Kort, E. J.; Sayed, N.; Liu, C.; Wu, S. M.; Wu, J. C.; Jovinge, S.

10.1101/748863 — genomics — Posted on 2019-09-23

882 Deciphering anomalous heterogeneous intracellular transport with neural networks

Han, D. S.; Korabel, N.; Chen, R.; Johnston, M.; Allan, V. J.; Fedotov, S.; Waigh, T. A.

10.1101/777615 — cell biology — Posted on 2019-09-23

883 Distinct neural progenitor pools in the ventral telencephalon generate diversity in striatal spiny projection neurons

Heusden, F. v.; Macey-Dare, A.; Krajeski, R.; Sharott, A.; Ellender, T. J.

10.1101/770057 — neuroscience — Posted on 2019-09-23

884 Long non-coding RNA Neat1 regulates adaptive behavioural response to stress in mice

Kukharsky, M. S.; Ninkina, N. N.; An, H.; Telezhkin, V.; Wei, W.; Rabesahala de Meritens, C.; Cooper-Knock, J.; Nakagawa, S.; Hirose, T.; Buchman, V. L.; Shelkovnikova, T. A.

10.1101/773333 — neuroscience — Posted on 2019-09-23

885 High-resolution Expression Profiling of Selected Gene Sets during Plant Immune Activation

Ding, P.; Ngou, B. P. M.; Furzer, O. J.; Sakai, T.; Shrestha, R. K.; MacLean, D.; Jones, J. D.

10.1101/775973 — plant biology — Posted on 2019-09-23

886 Genome-wide association study of Alzheimer’s disease CSF biomarkers in the EMIF-AD Multimodal Biomarker Discovery dataset

Hong, S.; Prokopenko, D.; Dobricic, V.; Kilpert, F.; Bos, I.; Vos, S. J. B.; Tijms, B. M.; Andreasson, U.; Blennow, K.; Vandenberghe, R.; Cleynen, I.; Gabel, S.; Schaeverbeke, J.; Scheltens, P.; Teunissen, C. E.; Niemantsverdriet, E.; Engelborghs, S.; Frisoni, G.; Blin, O.; Richardson, J. C.; Bordet, R.; Molinuevo, J. L.; Rami, L.; Alzheimer's Disease Neuroimaging Initiative (ADNI), ; Kettunen, P.; Wallin, A.; Lleo, A.; Sala, I.; Popp, J.; Peyratout, G.; Martinez-Lage, P.; Tainta, M.; Dobson, R. J. B.; Legido-Quigley, C.; Sleegers, K.; Broeckhoven, C. V.; Kate, M. t.; Barkhof, F.; Zetterberg

10.1101/774554 — genomics — Posted on 2019-09-23

887 Animals exhibit personality traits in their movement: a case study on location trajectories of primates

Morita, T.; Toyoda, A.; Aisu, S.; Kaneko, A.; Suda-Hashimoto, N.; Koda, H.; Matsuda, I.

10.1101/775486 — animal behavior and cognition — Posted on 2019-09-23

888 Differential impact of self and environmental antigens on the ontogeny and maintenance of CD4+ T cell memory

Hogan, T.; Nowicka, M.; Cownden, D.; Pearson, C.; Yates, A.; Seddon, B.

10.1101/632281 — immunology — Posted on 2019-09-23

889 Extracting T Cell Function and Differentiation Characteristics from the Biomedical Literature

Czech, E. A.; Hammerbacher, J.

10.1101/643767 — immunology — Posted on 2019-09-23

890 Longitudinal transcriptome-wide gene expression analysis of sleep deprivation treatment shows involvement of circadian genes and immune pathways

Foo, J. C.; Trautmann, N.; Sticht, C.; Treutlein, J.; Frank, J.; Streit, F.; Witt, S. H.; De La Torre, C.; Conrad von Heydendorff, S.; Sirignano, L.; Chen, J.; Mueller-Myhsok, B.; Meyer-Lindenberg, A.; Witt, C. C.; Gilles, M.; Deuschle, M.; Rietschel, M.

10.1101/628172 — epidemiology — Posted on 2019-09-23

891 Activity or Connectivity? Evaluating neurofeedback training in Huntington’s disease

Papoutsi, M.; Magerkurth, J.; Josephs, O.; Pepes, S. E.; Ibitoye, T.; Reilmann, R.; Hunt, N.; Payne, E.; Weiskopf, N.; Langbehn, D.; Rees, G.; Tabrizi, S. J.

10.1101/481903 — neuroscience — Posted on 2019-09-23

892 An evaluation of pool-sequencing transcriptome-based exon capture for population genomics in non-model species

Deleury, E.; Guillemaud, T.; Blin, A.; Lombaert, E.

10.1101/583534 — genomics — Posted on 2019-09-23

893 Selection and drift determine phenotypic stasis despite genetic divergence

Mallard, F.; Noble, L.; Guzella, T.; Afonso, B.; Baer, C. F.; Teotonio, H.

10.1101/778282 — evolutionary biology — Posted on 2019-09-23

894 Species specificity and intraspecific variation in the chemical profiles of Heliconius butterflies across a large geographic range

Darragh, K.; Montejo-Kovacevich, G.; Kozak, K. M.; Morrison, C. R.; Figueiredo, C. M. E.; Ready, J. S.; Salazar, C.; Linares, M.; Byers, K. J. R. P.; Merrill, R. M.; McMillan, W. O.; Schulz, S.; Jiggins, C. D.

10.1101/573469 — evolutionary biology — Posted on 2019-09-23

895 Aβ-Positivity Predicts Cognitive Decline but Cognition Also Predicts Progression to Aβ-Positivity

Elman, J. A.; Panizzon, M. S.; Franz, C. E.; Gustavson, D. E.; Sanderson, M. E.; Lyons, M. J.; Kremen, W. S.

10.1101/523787 — neuroscience — Posted on 2019-09-23

896 Retrospective inference as a form of bounded rationality, and its beneficial influence on learning

FitzGerald, T. H. B.; Penny, W. D.; Bonnici, H.; Adams, R. A.

10.1101/569574 — neuroscience — Posted on 2019-09-23

897 Repeatability of adaptive radiation depends on spatial scale: regional versus global replicates of stickleback in lake versus stream habitats

Paccard, A.; Hanson, D.; Stuart, Y. E.; von Hippel, F. A.; Kalbe, M.; Klepaker, T.; Skulason, S.; Kristjansson, B. K.; Bolnick, D. I.; Hendry, A. P.; Barrett, R. D.

10.1101/564005 — evolutionary biology — Posted on 2019-09-23

898 Network-based hierarchical population structure analysis for large genomic datasets

Greenbaum, G.; Rubin, A.; Templeton, A. R.; Rosenberg, N. A.

10.1101/518696 — genetics — Posted on 2019-09-23

899 Prodrug defiance reveals logic-based strategies for treating bacterial resistance

Holt, B. A.; Curro, I.; Kwong, G. A.

10.1101/556951 — bioengineering — Posted on 2019-09-23

900 Organ-specific propensity drives patterns of gene expression evolution

Fukushima, K.; Pollock, D. D.

10.1101/409888 — evolutionary biology — Posted on 2019-09-23

901 Transcriptome analysis of the Larimichthys polyactis under heat and cold stress

Chu, T.; Liu, F.; Qin, G.; Zhan, W.; Wang, M.; Lou, B.

10.1101/779462 — physiology — Posted on 2019-09-23

902 Accumulated degeneration of transcriptional regulation contributes to disease development and detrimental clinical outcomes of Alzheimer’s disease

Meng, G.; Lu, D.; Yu, F.; Sun, J.; Ding, C.; Sun, Y.; Liu, X.; Dai, J.; Jin, W.; Zhang, W.

10.1101/779249 — neuroscience — Posted on 2019-09-23

903 Bacterial genes outnumber archaeal genes in eukaryotic genomes

Brueckner, J.; Martin, W. F.

10.1101/779579 — evolutionary biology — Posted on 2019-09-23

904 The lipid kinase PI3Kα is required for aggregation and survival of intraperitoneal cancer cells.

Thole, A.; Thibault, B.; Basset, C.; Guillermet-Guibert, J.

10.1101/777649 — cancer biology — Posted on 2019-09-23

905 Experimental system and image analysis software for high throughput phenotyping of mycorrhizal growth response in Brachypodium distachyon

Maviane-Macia, F.; Ribeyre, C.; Buendia, L.; Gaston, M.; Khafif, M.; Devoilles, F.; Peeters, N.; Lefebvre, B.

10.1101/779330 — plant biology — Posted on 2019-09-23

906 Computational neural mechanisms of goal-directed planning and problem solving

Zarr, N.; Brown, J.

10.1101/779306 — neuroscience — Posted on 2019-09-23

907 Loss of dop-2 causes increased dopamine release and locomotory defects in the presence of ethanol

Pandey, P.; Singh, A.; Kaur, H.; Ghosh-Roy, A.; Babu, K.

10.1101/779405 — neuroscience — Posted on 2019-09-23

908 Eomes and Brachyury control pluripotency exit and germ layer segregation by changes of chromatin state

Tosic, J.; Kim, G.-J.; Pavlovic, M.; Schroeder, C. M.; Mersiowsky, S.-L.; Barg, M.; Hofherr, A.; Probst, S.; Koettgen, M.; Hein, L.; Arnold, S. J.

10.1101/774232 — developmental biology — Posted on 2019-09-23

909 Genetical engineered lung cancer cell for analyzing Epithelial-Mesenchymal transition

Kiełbus, M.; Czapinski, J.; Kałafut, J.; Wos, J.; Stepulak, A.; Rivero-Muller, A.

10.1101/778316 — bioengineering — Posted on 2019-09-23

910 Diversity and function of maternal HIV-1-specific antibodies at the time of vertical transmission

Doepker, L.; Simonich, C.; Ralph, D.; Gobillot, T. A.; Garrett, M.; Vigdorovich, V.; Sather, D. N.; Nduati, R.; Matsen, F.; Overbaugh, J.

10.1101/776856 — immunology — Posted on 2019-09-23

911 Thrombospondin module 1 domain (TSP1) of the matricellular protein CCN3 shows an atypical disulfide pattern and incomplete CWR layers

Xu, E.-R.; Lafita, A.; Bateman, A.; Hyvönen, M.

10.1101/779553 — biochemistry — Posted on 2019-09-23

912 Exploring the role of mass immunisation in influenza pandemic preparedness: a modelling study for the UK context

Grieco, L.; Panovska-Griffiths, J.; van Leeuwen, E.; Grove, P.; Utley, M.

10.1101/775270 — systems biology — Posted on 2019-09-23

913 An inducible genome editing system for plants

Wang, X.; Ye, L.; Ursache, R.; Mahonen, A. P.

10.1101/779140 — plant biology — Posted on 2019-09-23

914 Foundations of human problem solving

Zarr, N.; Brown, J.

10.1101/779322 — neuroscience — Posted on 2019-09-23

915 Defining data-driven primary transcript annotations with primaryTranscriptAnnotation in R

Anderson, W. D.; Duarte, F. M.; Civelek, M.; Guertin, M. J.

10.1101/779587 — genomics — Posted on 2019-09-23

916 Mechanism of Interaction of BMP and Insulin Signaling in C. elegans Development and Homeostasis

Clark, J. F.; Ciccarelli, E. J.; Ranepura, G.; Hasan, M. S.; Melendez, A.; Savage-Dunn, C.

10.1101/777805 — cell biology — Posted on 2019-09-23

917 Active transcription regulates ORC/MCM distribution whereas replication timing correlates with ORC density in human cells

Kirstein, N.; Buschle, A.; Wu, X.; Krebs, S.; Blum, H.; Hammerschmidt, W.; Hyrien, O.; Audit, B.; Schepers, A.

10.1101/778423 — cell biology — Posted on 2019-09-23

918 DAVI:Deep Learning Based Tool for Alignment and Single Nucleotide Variant identification

Gupta, G.; Saini, S.

10.1101/778647 — bioinformatics — Posted on 2019-09-23

919 scClassify: hierarchical classification of cells

Lin, Y.; Cao, Y.; Kim, H. J.; Salim, A.; Speed, T. P.; Lin, D.; Yang, P.; Yang, J. Y. H.

10.1101/776948 — bioinformatics — Posted on 2019-09-23

920 Anatomy-guided Inverse-phase-encoding Registration Method for Correcting Susceptibility Artifacts in Sub-millimeter fMRI

Duong, S. T. M.; Phung, S. L.; Bouzerdoum, A.; Boyd Taylor, H.; Puckett, A. M.; Schira, M. M.

10.1101/779272 — neuroscience — Posted on 2019-09-23

921 Mammalian RAD51 prevents non-conservative alternative end-joining and single strand annealing through non-catalytic mechanismssms

So, A.; Muhammad, A.; Chailleux, C.; Sesma Sanz, L.; Ragu, S.; Le Cam, E.; Canitrot, Y.; Masson, J. Y.; Dupaigne, P.; Lopez, B. S.; Guirouilh-Barbat, J.

10.1101/768887 — molecular biology — Posted on 2019-09-23

922 Soil prokaryotes associated with decreasing pathogen density during anaerobic soil disinfestation

Lee, C. G.; Iida, T.; Kunitomo, E.; Nakaho, K.; Ohkuma, M.

10.1101/774810 — microbiology — Posted on 2019-09-23

923 Mating-type specific divergent RPL22 paralogs are essential, differentially regulated, and control aspects of sexual reproduction in Cryptococcus neoformans

Ianiri, G.; Fang, Y.; Dahlmann, T. A.; Janbon, G.; Kück, U.; Heitman, J.

10.1101/777102 — genetics — Posted on 2019-09-23

924 Amphipathic helices of cellular proteins can replace the helix in M2 of Influenza A virus with only small effects on virus replication

Hu, B.; Siche, S.; Möller, L.; Veit, M.

10.1101/776864 — cell biology — Posted on 2019-09-23

925 TRANSCUP: a scalable workflow for predicting cancer of unknown primary based on next-generation transcriptome profiling

Li, P.; Shi, W.; Wang, K.

10.1101/774315 — bioinformatics — Posted on 2019-09-23

926 Randomly connected networks generate emergent selectivity and predict decoding properties of large populations of neurons

Sederberg, A.; Nemenman, I.

10.1101/779223 — neuroscience — Posted on 2019-09-23

927 White matter microsctructure predicts focal and broad functional dedifferentiation of visual processing in normal aging

Rieck, J. R.; Rodrigue, K. M.; Park, D. C.; Kennedy, K. M.

10.1101/779264 — neuroscience — Posted on 2019-09-23

928 Microbiota Assembly, Structure, and Dynamics Among Tsimane Horticulturalists of the Bolivian Amazon

Sprockett, D. D.; Martin, M.; Costello, E. K.; Burns, A. R.; Holmes, S. P.; Gurven, M.; Relman, D. A.

10.1101/779074 — microbiology — Posted on 2019-09-23

929 Distinct regulation of Nr4a receptors by NFAT and ERK signalling during T cell activation

Jennings, E. K.; Kanabar, S. S.; Ono, M.; Wraith, D. C.; Bending, D.

10.1101/767566 — immunology — Posted on 2019-09-23

930 Hackflex: low cost Illumina sequencing library construction for high sample counts

Gaio, D.; To, J.; Liu, M.; Monahan, L.; Anantanawat, K.; Darling, A. E.

10.1101/779215 — genomics — Posted on 2019-09-23

931 Evidence of capacitation in the parasitoid wasp, Nasonia vitripennis and its potential role in sex allocation

Jones, A. R. C.; Mallon, E.

10.1101/777540 — evolutionary biology — Posted on 2019-09-23

932 Quantifying geographic accessibility to improve cost-effectiveness of entomological monitoring.

Longbottom, J.; Krause, A.; Torr, S. J.; Stanton, M. C.

10.1101/779561 — ecology — Posted on 2019-09-23

933 Circadian regulation of muscle growth independent of locomotor activity

Kelu, J. J.; Pipalia, T.; Hughes, S. M.

10.1101/778787 — physiology — Posted on 2019-09-23

934 Listing candidate diagnostic markers and exploring the molecular basis of human spermatogenesis and a type of male infertility (Non-Obstructive Azoospermia), with transcriptomics via the next generation sequencing methods

Balagannavar, G.; Basavaraju, K.; Bajpai, A. K.; Davuluri, S.; Kannan, S.; S, V. S.; M, M.; Chandrashekar, D.; Chitturi, N.; Balagannavar, V.; Oguru, S.; Acharya, K. K.

10.1101/778670 — developmental biology — Posted on 2019-09-23

935 ESCO1 and CTCF enable formation of long chromatin loops by protecting cohesinSTAG1 from WAPL

Wutz, G.; St. Hilaire, B. T. G.; Ladurner, R.; Stocsits, R.; Nagasaka, K.; Pignard, B.; Sanborn, A.; Tang, W.; Varnai, C.; Ivanov, M.; Schoenfelder, S.; van der Lelij, P.; Huang, X.; Duernberger, G.; Roitinger, E.; Mechtler, K.; Davidson, I. F.; Fraser, P.; Aiden, E. L.; Peters, J. M.

10.1101/779058 — cell biology — Posted on 2019-09-23

936 Development of a novel HPTLC-based method for the simultaneous quantification of clinically relevant lipids from cells and tissue extracts

Pinault, M.; Guimaraes, C.; Ben Hassen, C.; Gutierrez-Pajares, J. L.; Chevalier, S.; Goupille, C.; Bernard-Savary, P.; Frank, P. G.

10.1101/779603 — biochemistry — Posted on 2019-09-23

937 The structure of behavioral variation within a genotype

Werkhoven, Z.; Bravin, A.; Skutt-Kakaria, K.; Reimers, P.; Pallares, L. F.; Ayroles, J.; de Bivort, B. L.

10.1101/779363 — neuroscience — Posted on 2019-09-23

938 Gene Knock Up via 3’UTR editing to study gene function in vivo

Mätlik, K.; Olfat, S.; Garton, D. R.; Montano-Rodriguez, A.; Turconi, G.; Porokuokka, L. L.; Panhelainen, A.; Schweizer, N.; Kopra, J.; Cowlishaw, M. C.; Piepponen, T. P.; Zhang, F.-P.; Sipilä, P.; Jakobsson, J.; Andressoo, J.-O.

10.1101/775031 — neuroscience — Posted on 2019-09-23

939 Predictability of the antigenic evolution of human influenza A H3 viruses

AGUAS, R.; Ferguson, N.

10.1101/770446 — evolutionary biology — Posted on 2019-09-23

940 Sleeve Gastrectomy enhances glucose utilization and remodels adipose tissue independent of weight loss

Harris, D. A.; Mina, A.; Cabarkapa, D.; Heshmati, K.; Subramaniam, R.; Banks, A. S.; Tavakkoli, A.; Sheu, E. G.

10.1101/779033 — physiology — Posted on 2019-09-23

941 Kv1 potassium channels control action potential firing of putative GABAergic deep cerebellar nuclear neurons.

Feria Pliego, J. A.; Pedroarena, C. M.

10.1101/779082 — neuroscience — Posted on 2019-09-23

942 Physical Activity Induces Nucleus Accumbens Genes Expression Changes Preventing Chronic Pain Susceptibility Promoted by High-Fat Diet and Sedentary Behavior in Mice

Brandao, A. d. F.; Bonet, I. J. M.; Pagliusi, M. O. F.; Zanetti, G. G.; Pho, N.; Tambeli, C. H.; Parada, C. A.; Vieira, A. S.; Sartori, C. R.

10.1101/768309 — neuroscience — Posted on 2019-09-23

943 Neurocognitive and Functional Heterogeneity in Depressed Youth

Baller, E. B.; Kaczkurkin, A. N.; Sotiras, A.; Adebimpe, A.; Bassett, D. S.; Calkins, M. E.; Cui, Z.; Gur, R. E.; Gur, R. C.; Linn, K. A.; Moore, T.; Roalf, D. R.; Varol, E.; Wolf, D. H.; Xia, C. H.; Davatzikos, C.; Satterthwaite, T. D.

10.1101/778878 — neuroscience — Posted on 2019-09-23

944 Hap2-Ino80 facilitated transcription promotes de novo establishment of CENP-A chromatin

Singh, P. P.; Shukla, M.; White, S. A.; Tong, P.; Auchynnikava, T.; Spanos, C.; Rappsilber, J.; Pidoux, A. L.; Allshire, R. C.

10.1101/778639 — molecular biology — Posted on 2019-09-23

945 Towards the identification of causal genes for age-related macular degeneration

Cheng, F.-F.; Zhuang, Y.-Y.; Wen, X.-R.; Xue, A.; Yang, J.; Jin, Z.-B.

10.1101/778613 — genetics — Posted on 2019-09-23

946 A spatial genomic approach identifies time lags and historic barriers to gene flow in a rapidly fragmenting Appalachian landscape

Maigret, T.; Cox, J.; Weisrock, D.

10.1101/777920 — evolutionary biology — Posted on 2019-09-23

947 Food supplementation affects gut microbiota and immunological resistance to parasites in a wild bird species

Knutie, S. A.

10.1101/770644 — ecology — Posted on 2019-09-23

948 Photoswitchable microtubule stabilisers optically control tubulin cytoskeleton structure and function

Müller-Deku, A.; Loy, K.; Kraus, Y.; Heise, C.; Bingham, R.; Ahlfeld, J.; Trauner, D.; Thorn-Seshold, O.

10.1101/778993 — cell biology — Posted on 2019-09-23

949 Prostaglandin D2 Signaling is Not Involved in Rat Hindlimb Tendon Healing

Sarver, D. C.; Sugg, K. B.; Talarek, J. R.; Swanson, J. B.; Oliver, D. J.; Hinken, A. C.; Kramer, H. F.; Mendias, C. L.

10.1101/778126 — physiology — Posted on 2019-09-23

950 Dynamic Predictions: Oscillatory Mechanisms Underlying Multisensory Sequence Processing

Wang, P.; Maye, A.; Daume, J.; Xue, G.; Engel, A. K.

10.1101/778969 — neuroscience — Posted on 2019-09-23

951 Prediction errors explain mismatch signals of neurons in the medial prefrontal cortex

Casado-Roman, L.; Perez-Gonzalez, D.; Malmierca, M. S.

10.1101/778928 — neuroscience — Posted on 2019-09-23

952 Interaction between polygenic liability for schizophrenia and childhood adversity influences daily-life emotional dysregulation and psychosis proneness

Pries, L.-K.; Klingenberg, B.; Menne-Lothmann, C.; Decoster, J.; van Winkel, R.; Collip, D.; Delespaul, P.; De Hert, M.; Derom, C.; Thiery, E.; Jacobs, N.; Wichers, M.; Cinar, O.; Lin, B. D.; Luykx, J. J.; Rutten, B. P. F.; van Os, J.; Guloksuz, S.

10.1101/778761 — genomics — Posted on 2019-09-23

953 Noncoding microdeletion in mouse Hgf disrupts neural crest migration into the stria vascularis, reduces the endocochlear potential and suggests the neuropathology for human nonsyndromic deafness DFNB39

Morell, R. J.; Olszewski, R.; Tona, R.; Leitess, S.; Schultz, J. M.; Thomason, E. J.; Whitley, B. N.; Hill, C.; Saunders, T.; Starost, M. F.; Fitzgerald, T.; Wilson, E.; Ohyama, T.; Friedman, T. B.; Hoa, M.

10.1101/778365 — genetics — Posted on 2019-09-23

954 Describing macroecological patterns in microbes: Approaches for comparative analyses of operational taxonomic unit read number distribution with a case study of global oceanic bacteria

Nakadai, R.; Okazaki, Y.; Matsuoka, S.

10.1101/778829 — ecology — Posted on 2019-09-23

955 Efficiently summarizing relationships in large samples: a general duality between statistics of genealogies and genomes

Ralph, P. L.; Thornton, K.; Kelleher, J.

10.1101/779132 — genetics — Posted on 2019-09-23

956 CSAG1 Maintains the Integrity of the Mitotic Centrosome in Cells with Defective p53

Sapkota, H.; Wren, J. D.; Gorbsky, G. J.

10.1101/778522 — cell biology — Posted on 2019-09-23

957 Molecular characterization of carbapenem-resistant Klebsiella pneumoniae isolates with focus on antimicrobial resistance

Yu, X.; Zhang, W.; Zhao, Z.; Ye, C.; Zhou, S.; Wu, S.; Han, L.; Han, Z.; Ye, H.

10.1101/778795 — bioengineering — Posted on 2019-09-23

958 The speed of GTP hydrolysis determines GTP cap size and controls microtubule stability

Roostalu, J.; Thomas, C.; Cade, N. I.; Kunzelmann, S.; Taylor, I. A.; Surrey, T.

10.1101/779108 — biochemistry — Posted on 2019-09-23

959 A streamlined mass spectrometry-based proteomics workflow forlarge scale FFPE tissue analysis

Coscia, F.; Doll, S.; Bech, J. M.; Mund, A.; Lengyel, E.; Lindebjerg, J.; Madsen, G. I.; Moreira, J. M. A.; Mann, M.

10.1101/779009 — systems biology — Posted on 2019-09-23

960 Analysis of continuous infusion functional PET (fPET) in the human brain

Li, S.; Jamadar, S. D.; Ward, P. G. D.; Premaratne, M.; Egan, G.; Chen, Z.

10.1101/778357 — neuroscience — Posted on 2019-09-23

961 Long-lasting effects of transient, perinatal fluoxetine exposure on cell proliferation in the dentate gyrus of mice

Spanswick, S. C.; Chrusch, M. J.; Kiryanova, V.; Dyck, R. H.

10.1101/778951 — neuroscience — Posted on 2019-09-23

962 Role of Chemokine and TNF signaling pathway in oral squamous cell carcinoma: A RNA deep sequencing analysis of oral buccal mucosa squamous carcinoma model of Chinese hamster

Xu, G.; Wei, J.; Huangfua, B.; Gao, J.; Wang, X.; Xiao, L.; Xuan, R.; Chen, Z.; Song, G.

10.1101/778399 — molecular biology — Posted on 2019-09-23

963 Resurrecting the ancient glow

Oba, Y.; Konishi, K.; Yano, D.; Shibata, H.; Kato, D.-i.; Shirai, T.

10.1101/778688 — evolutionary biology — Posted on 2019-09-23

964 High-dimensional Bayesian phenotype classification and model selection using genomic predictors

Linder, D. F.; Panchal, V.

10.1101/778472 — bioinformatics — Posted on 2019-09-23

965 Ultrasound-based optimal parameter estimation improves assessment of calf muscle-tendon interaction during walking

Delabastita, T.; Afschrift, M.; Vanwanseele, B.; De Groote, F.

10.1101/778720 — bioengineering — Posted on 2019-09-23

966 SAMPL: The Spreading Activation and Memory PLasticity Model

Sievers, B.; Momennejad, I.

10.1101/778563 — animal behavior and cognition — Posted on 2019-09-23

967 Characterizing neural coding performance for populations of sensory neurons: comparing a weighted spike distance metrics to other analytical methods.

Marsat, G.

10.1101/778514 — neuroscience — Posted on 2019-09-23

968 Unconscious learning and automatic inhibition are accompanied by frontal theta and sensorimotor interactions

Isabella, S. L.; Cheyne, J. A.; Cheyne, D. O.

10.1101/777961 — neuroscience — Posted on 2019-09-23

969 Re-evaluation of a Tn5::gacA mutant of Pseudomonas syringae pv. tomato DC3000 uncovers roles for uvrC and anmK in promoting virulence

Anderson, J. C.; O'Malley, M. R.; Chang, J. H.; Weisberg, A. J.

10.1101/774711 — microbiology — Posted on 2019-09-23

970 Modeling Cell-Specific Dynamics and Regulation of the Common Gamma Chain Cytokines

Farhat, A. M.; Weiner, A. C.; Posner, C.; Kim, Z. S.; Carlson, S. M.; Meyer, A. S.

10.1101/778894 — immunology — Posted on 2019-09-23

971 Novel regulators of nitric oxide signaling triggered by host perception in a plant pathogen

Ding, Y.; Gardiner, D. M.; Xiao, D.; Kazan, K.

10.1101/779173 — pathology — Posted on 2019-09-23

972 Epigenetic rejuvenation of the hippocampus by environmental enrichment

Zocher, S.; Overall, R. W.; Lesche, M.; Dahl, A.; Kempermann, G.

10.1101/776310 — neuroscience — Posted on 2019-09-23

973 Amyloid duration is associated with preclinical cognitive decline and tau PET

Koscik, R. L.; Betthauser, T. J.; Jonaitis, E. M.; Allison, S. L.; Clark, L. R.; Hermann, B. P.; Cody, K. A.; Engle, J. W.; Barnhart, T. E.; Stone, C. K.; Chin, N. A.; Carlsson, C. M.; Asthana, S.; Christian, B. T.; Johnson, S. C.

10.1101/778415 — neuroscience — Posted on 2019-09-23

974 Neurobehavioural characterisation and stratification of reinforcement-related behaviour

Jia, T.; Ing, A.; Quinlan, E. B.; Tay, N.; Luo, Q.; Francesca, B.; Banaschewski, T.; Barker, G. J.; Bokde, A. L. W.; Bromberg, U.; Büchel, C.; Desrivieres, S.; Feng, J.; Flor, H.; Grigis, A.; Garavan, H.; Gowland, P.; Heinz, A.; Ittermann, B.; Martinot, J.-L.; Martinot, M.-L. P.; Nees, F.; Orfanos, D. P.; Paus, T.; Poustka, L.; Fröhner, J. H.; Smolka, M. N.; Walter, H.; Whelan, R.; Schumann, G.; IMAGEN Consortium,

10.1101/778308 — neuroscience — Posted on 2019-09-23

975 Patterns of neural correlations in V1 vary with the number of objects

Jun, N. Y.; Ruff, D. A.; Tokdar, S. T.; Cohen, M. R.; Groh, J. M.

10.1101/777912 — neuroscience — Posted on 2019-09-23

976 Evidence for reduced CTX-M carriage in cattle-associated Escherichia coli at low temperatures and on publicly accessible farmland: implications for surveillance and potential for farm-to-human transmission

Schubert, H.; Findlay, J.; Morley, K.; Puddy, E. F.; Arbon, R.; Gould, V. C.; Mounsey, O.; Evans, M.; Rees, G. M.; Barrett, D. C.; Turner, K. M.; Cogan, T. A.; Avison, M. B.; Reyher, K. K.

10.1101/778407 — microbiology — Posted on 2019-09-23

977 Transcription profiles of age-at-maturity-associated genes suggest cell fate commitment regulation as a key factor in the Atlantic salmon maturation process

Kurko, J.; Debes, P.; House, A.; Aykanat, T.; Erkinaro, J.; Primmer, C. R.

10.1101/778498 — genetics — Posted on 2019-09-23

978 Using Parsimony-Guided Tree Proposals to Accelerate Convergence in Bayesian Phylogenetic Inference

Zhang, C.; Huelsenbeck, J. P.; Ronquist, F.

10.1101/778571 — evolutionary biology — Posted on 2019-09-23

979 β-adrenergic signaling modulates cancer cell mechanotype through a RhoA-ROCK-myosin II axis

Kim, T.-H.; Vazquez-Hidalgo, E.; Abdou, A.; Tan, X. H. M.; Christodoulides, A.; Farris, C. M.; Chiou, P. Y.; Sloan, E. K.; Katira, P.; Rowat, A. C.

10.1101/777755 — cancer biology — Posted on 2019-09-23

980 Automation of (Macro)molecular Properties Using a Bootstrapping Swarm Artificial Neural Network Method: Databases for Machine Learning

Rahmani, B.; Kamberaj, H.

10.1101/779496 — biophysics — Posted on 2019-09-23

981 An Inter-Species Translation Model Implicates Integrin Signaling in Infliximab-Resistant Colonic Crohn’s Disease

Brubaker, D. K.; Kumar, M. P.; Vega, P. N.; Southard-Smith, A. N.; Simmons, A. J.; Scoville, E. A.; Coburn, L. A.; Wilson, K. T.; Lau, K. S.; Lauffenburger, D. A.

10.1101/776666 — systems biology — Posted on 2019-09-23

982 Combinatorial analysis of Saccharomyces cerevisiae regulatory elements

Dhillon, N.; Shelansky, R.; Townshend, B.; Jain, M.; Boeger, H.; Endy, D.; Kamakaka, R. T.

10.1101/777763 — synthetic biology — Posted on 2019-09-23

983 Triceps surae torque-length relationships relevant for walking activity levels with and without an ankle exoskeleton

Hessel, A. L.; Raiteri, B. J.; Marsh, M. J.; Hahn, D.

10.1101/778175 — physiology — Posted on 2019-09-23

984 Strain-level identification of bacterial tomato pathogens directly from metagenomic sequences

Mechan Llontop, M. E.; Sharma, P.; Aguilera Flores, M.; Yang, S.; Pollok, J.; Tian, L.; Huang, C.; Rideout, S.; Heath, L. S.; Li, S.; Vinatzer, B. A.

10.1101/777706 — microbiology — Posted on 2019-09-23

985 Metagenomics and stable isotope probing offer insights into metabolism of polycyclic aromatic hydrocarbons degraders in chronically polluted seawater

Sieradzki, E. T.; Morando, M.; Fuhrman, J. A.

10.1101/777730 — microbiology — Posted on 2019-09-23

986 Comparative evolutionary analysis and prediction of deleterious mutation patterns between sorghum and maize

Lozano, R.; Gazave, E.; dos Santos, J. P. R.; Stetter, M.; Valluru, R.; Bandillo, N.; Fernandes, S. B.; Brown, P. J.; Shakoor, N.; Mockler, T. C.; Ross-Ibarra, J.; Buckler, E. S.; Gore, M. A.

10.1101/777623 — genomics — Posted on 2019-09-23

987 The Panama Canal after a century of human impacts

Salgado, J.; Velez, M. I.; Gonzalez-Arango, C.; Rose, N. L.; Yang, H.; Huguet, M. C.; Camacho, J. S.; O'Dea, A.

10.1101/777938 — ecology — Posted on 2019-09-23

988 FeGenie: a comprehensive tool for the identification of iron genes and iron gene neighborhoods in genomes and metagenome assemblies

Garber, A. I.; Nealson, K. H.; Okamoto, A.; McAllister, S. M.; Chan, C. S.; Barco, R. A.; Merino, N.

10.1101/777656 — bioinformatics — Posted on 2019-09-23

989 Estimating The Lateral Margin Of Stability During Walking And Turning Using Inertial Sensors

Fino, P. C.; Horak, F. B.; Curtze, C.

10.1101/768192 — bioengineering — Posted on 2019-09-23

990 Transcriptome and translatome profiling and translational network analysis during seed maturation reveals conserved transcriptional and distinct translational regulatory patterns

Bai, B.; Horst, S. v. d.; Delhomme, N.; Robles, A. V.; Bentsink, L.; Hanson, J.

10.1101/778001 — systems biology — Posted on 2019-09-23

991 Layer-specific sensory processing impairment in the primary somatosensory cortex after motor cortex infarction

Fukui, A.; Osaki, H.; Ueta, Y.; Muragaki, Y.; Kawamata, T.; Miyata, M.

10.1101/778167 — physiology — Posted on 2019-09-23

992 The Effect of Eucalyptol on Nursing Home Residents

Goto, S.; Suzuki, H.; Nakagawa, T.; Shimizu, K.

10.1101/778209 — physiology — Posted on 2019-09-23

993 LeafByte: A mobile application that measures leaf area and herbivory quickly and accurately

Getman-Pickering, Z. L.; Campbell, A.; Aflitto, N.; Ugine, T.; Greele, A.; Davis, J.

10.1101/777516 — ecology — Posted on 2019-09-23

994 The presence of copy number variants in specific topologically associating domains has prognostic value in many cancer types

Li, L.; Barth, N.; Pilarsky, C.; Taher, L.

10.1101/777573 — cancer biology — Posted on 2019-09-23

995 Fingerprints of cancer by persistent homology

Carpio, A.; Bonilla, L. L.; Mathews, J. C.; Tannenbaum, A. R.

10.1101/777169 — cancer biology — Posted on 2019-09-23

996 Flossing DNA in a Dual Nanopore Device

Liu, X.; Zimny, P.; Zhang, Y.; Rana, A.; Reisner, W.; Dunbar, W.

10.1101/778217 — biophysics — Posted on 2019-09-23

997 FOCAL3D: A 3-dimensional clustering package for single-molecule localization microscopy

Nino, D.; Djayakarsana, D.; Milstein, J. N.

10.1101/777722 — bioinformatics — Posted on 2019-09-23

998 Δ9-Tetrahydrocannabinol (THC) impairs visual working memory performance

Adam, K. C. S.; Doss, M. K.; Pabon, E.; Vogel, E. K.; de Wit, H.

10.1101/778068 — pharmacology and toxicology — Posted on 2019-09-23

999 Resting-State Functional Networks of Different Topographic Representations in the Somatosensory Cortex of Macaque Monkeys and Humans

Thomas, J.; Sharma, D.; Mohanta, S.; Jain, N.

10.1101/775569 — neuroscience — Posted on 2019-09-23

1000 Comparison of BOLD and CBV using 3D EPI and 3D GRASE for cortical layer fMRI at 7T.

Beckett, A. J.; Dadakova, T.; Townsend, J.; Huber, L.; Park, S.; Feinberg, D. A.

10.1101/778142 — neuroscience — Posted on 2019-09-23

1001 Dopamine Promotes Cognitive Effort by Biasing the Benefits Versus Costs of Cognitive Work

Westbrook, A.; van den Bosch, R.; Määttä, J.; Hofmans, L.; Papadopetraki, D.; Cools, R.; Frank, M. J.

10.1101/778134 — neuroscience — Posted on 2019-09-23

1002 Studying Spatial Memory in Augmented and Virtual reality

Maidenbaum, S.; Patel, A.; Garlin, I. C.; Jacobs, J.

10.1101/777946 — neuroscience — Posted on 2019-09-23

1003 Genetic heterogeneity of the Spy1336/R28 - Spy1337 Virulence Axis in Streptococcus pyogenes and Effect on Gene Transcript Levels and Pathogenesis

Eraso, J. M.; Kachroo, P.; Olsen, R. J.; Beres, S. B.; Zhu, L.; Badu, T.; Shannon, S.; Cantu, C. C.; Saavedra, M. O.; Kubiak, S. L.; Porter, A. R.; DeLeo, F. R.; Musser, J. M.

10.1101/777987 — microbiology — Posted on 2019-09-23

1004 Environmentally sensitive hotspots in the methylome of the early human embryo

Silver, M. J.; Saffari, A.; Kessler, N. J.; Chandak, G. R.; Fall, C. H.; Issarapu, P.; Dedaniya, A.; Betts, M.; Moore, S. E.; James, P. T.; Monk, D.; Prentice, A. M.

10.1101/777508 — genomics — Posted on 2019-09-23

1005 Inferring the Genetic influences on Psychological Traits Using MRI Connectivity Predictive Models: Demonstration with Cognition

Hatoum, A. S.; Reineberg, A. E.; Kragel, P. A.; Wager, T. D.; Friedman, N. P.

10.1101/777821 — genetics — Posted on 2019-09-23

1006 Not all seabird species can overcome marine threats when predator removal at their colonies is prioritised

Borrelle, S. B.; Jones, H. P.; Richard, Y.; Salguero-Gomez, R.

10.1101/770263 — ecology — Posted on 2019-09-23

1007 The genomic landscape of metastasis in treatment-naive breast cancer models

Ross, C.; Szczepanek, K.; Lee, M.; Yang, H.; Qiu, T.; Sanford, J.; Hunter, K.

10.1101/777904 — cancer biology — Posted on 2019-09-23

1008 Reconstructing an epigenetic landscape using a genetic ‘pulling’ approach

Assaf, M.; Be'er, S.; Roberts, E.

10.1101/777557 — biophysics — Posted on 2019-09-23

1009 Struo: a pipeline for building custom databases for common metagenome profilers

Cuesta-Zuluaga, J. d. l.; Ley, R. E.; Youngblut, N. D.

10.1101/774372 — bioinformatics — Posted on 2019-09-23

1010 The Activome: multiplexed probing of activity of proteolytic enzymes using mass cytometry-compatible activity-based probes (TOF-probes)

Poreba, M.; Groborz, K.; Rut, W.; Pore, M.; Snipas, S. J.; Vizovisek, M.; Turk, B.; Drag, M.; Salvesen, G. S.

10.1101/775627 — biochemistry — Posted on 2019-09-23

1011 Coconut inflorescence sap mediated synthesis of silver nanoparticles and its diverse antimicrobial properties

MK, R.; K.S., M.; Nair, S. S.; B, K. K.; TM, S.; KP, S.; K, S.; Hallur, S.; Prasad, K.; Chandran, N.; KB, H.; Karun, A.

10.1101/775940 — plant biology — Posted on 2019-09-23

1012 Profiling the expression and function of ER46 in human endometrial tissues and uterine NK cells

Gibson, D. A.; Esnal Zufiaurre, A.; Bajo Santos, C.; Collins, F.; Critchley, H.; Saunders, P.

10.1101/777607 — physiology — Posted on 2019-09-23

1013 Weight loss reduces head motion: re-visiting a major confound in neuroimaging

Beyer, F.; Prehn, K.; Wuesten, K. A.; Villringer, A.; Ordemann, J.; Floel, A.; Witte, A. V.

10.1101/766261 — neuroscience — Posted on 2019-09-23

1014 A multifaceted cellular damage repair and prevention pathway promotes high level tolerance to β-lactam antibiotics

Shin, J.-H.; Choe, D.; Ransegnola, B.; Hong, H.-R.; Onyekwere, I.; Cho, B.-K.; Doerr, T.

10.1101/777375 — microbiology — Posted on 2019-09-23

1015 Description of Ruminococcus catenae SW178 sp. nov., a new anaerobic species isolated from feral chicken

Wongkuna, S.; Ghimire, S.; Chankhamhaengdecha, S.; Janvilisri, T.; Scaria, J.

10.1101/777680 — microbiology — Posted on 2019-09-23

1016 Chromatin information content landscapes inform transcription factor and DNA interactions

D'Oliveira Albanus, R.; Kyono, Y.; Hensley, J.; Varshney, A.; Orchard, P.; Kitzman, J. O.; Parker, S. C. J.

10.1101/777532 — genomics — Posted on 2019-09-23

1017 Natural epiallelic variation is associated with quantitative resistance to the pathogen Plasmodiophora brassicae

Liegard, B.; Gravot, A.; Quadrana, L.; Aigu, Y.; Benejam, J.; Lariagon, C.; Lemoine, J.; Colot, V.; Manzanares-Dauleux, M. J.; Jubault, M.

10.1101/776989 — genetics — Posted on 2019-09-23

1018 Field application of the geometric framework reveals a multistep strategy of nutrient regulation in a leaf-miner

Body, M. J.; Behmer, S. T.; Pelisson, P.-F.; Casas, J.; Giron, D.

10.1101/777367 — ecology — Posted on 2019-09-23

1019 A mosquito survey along a transect of urbanization in Dschang, West Region of Cameroon, reveals potential risk of arbovirus spillovers

Mayi, M. P. A.; Bamou, R.; Djiappi-Tchamen, B.; Djojo-Tachegoum, C.; Fontaine, A.; Antonio-Nkondjio, C.; Tchuinkam, T.

10.1101/763755 — ecology — Posted on 2019-09-23

1020 An assessment of adult mosquito collection techniques for studying species abundance and diversity in Maferinyah, Guinea

Cansado Utrilla, C.; Jeffries, C. L.; Kristan, M.; Brugman, V. A.; Heard, P.; Camara, G.; Sylla, M.; Beavogui, A. H.; Messenger, L. A.; Walker, T.

10.1101/772822 — ecology — Posted on 2019-09-23

1021 Influence of plant genotype and soil on the wheat rhizosphere microbiome: identification of a core microbiome across eight African and European soils

Simonin, M.; Dasilva, C.; Terzi, V.; Ngonkeu, E. L. M.; Diouf, D.; Kane, A.; Bena, G.; Moulin, L.

10.1101/777383 — ecology — Posted on 2019-09-23

1022 Monotherapy efficacy of BBB-permeable small molecule activators of PP2A in glioblastoma

Merisaari, J.; Denisova, O. V.; Doroszko, M.; Le Joncour, V.; Johansson, P.; Leenders, W. P. J.; Kastrinsky, D. B.; Nilesh, Z.; Laakkonen, P.; Nelander, S.; Ohlmeyer, M.; Westermarck, J.

10.1101/777276 — cancer biology — Posted on 2019-09-23

1023 A Meta-Analysis of Hippocampal Transcriptional Profiling Studies in a Selectively-Bred Rat Model Provides Converging Evidence with Genetic Sequencing to Implicate Specific Candidate Genes and Pathways in the Liability for Internalizing and Externalizing Psychiatric Disorders

Birt, I. A.; Hagenauer, M. H.; Clinton, S. M.; Aydin, C.; Blandino, P.; Stead, J. D. H.; Hilde, K. L.; Meng, F.; Thompson, R. C.; Khalil, H. H.; Stefanov, A.; Maras, P. M.; Zhou, Z.; Goldman, D.; Watson, S. J.; Akil, H.

10.1101/774034 — neuroscience — Posted on 2019-09-23

1024 How the forest interacts with the trees: Multiscale shape integration explains global and local processing

Jacob, G.; Arun, S.

10.1101/777110 — neuroscience — Posted on 2019-09-23

1025 qtQDA: quantile transformed quadratic discriminant analysis for high-dimensional RNA-seq data

Kochan, N.; Tutuncu, G. Y.; Smyth, G. K.; Gandolfo, L. C.; Giner, G.

10.1101/751370 — bioinformatics — Posted on 2019-09-22

1026 Improved Automatic Pharmacovigilance: An Enhancement to the MedWatcher Social System for Monitoring Adverse Events

Nguyen, A. T.; Lien, J.; Raff, E.; Mekaru, S. R.

10.1101/717421 — bioinformatics — Posted on 2019-09-22

1027 Sex Lability and Dimorphism in Dioecious Palmer Amaranth (Amaranthus palmeri)

B. Mesgaran, M.; Matzrafi, M.; Ohadi, S.

10.1101/769935 — plant biology — Posted on 2019-09-22

1028 SEQUIN multiscale imaging of mammalian central synapses reveals loss of synaptic microconnectivity resulting from diffuse traumatic brain injury

Sauerbeck, A. D.; Gangolli, M.; Reitz, S. J.; Salyards, M. H.; Kim, S. H.; Hemingway, C.; Makkapati, T.; Kerschensteiner, M.; Brody, D. L.; Kummer, T. T.

10.1101/704916 — neuroscience — Posted on 2019-09-22

1029 Microbial community dynamics and coexistence in a sulfide-driven phototrophic bloom

Bhatnagar, S.; Cowley, E. S.; Kopf, S. H.; Perez Castro, S.; Kearney, S.; Dawson, S.; Hanselmann, K.; Ruff, S. E.

10.1101/604504 — microbiology — Posted on 2019-09-22

1030 Evolutionary rates are correlated between cockroach symbiont and mitochondrial genomes

Arab, D. A.; Bourguignon, T.; Wang, Z.; Ho, S. Y. W.; Lo, N.

10.1101/542241 — evolutionary biology — Posted on 2019-09-22

1031 Traces of Meaning Itself: Encoding distributional word vectors in brain activity

Sassenhagen, J.; Fiebach, C. J.

10.1101/603837 — neuroscience — Posted on 2019-09-22

1032 Reversible Reorganization Of Basolateral Amygdala Dendrites in Male Rats Accompanies Stress Resilience

Michaelson, S. D.; Miranda Tapia, A. P.; McKinty, A. D.; Silveira Villarroel, H.; Mackay, J. P.; Urban, J. H.; Colmers, W. F.

10.1101/777979 — neuroscience — Posted on 2019-09-22

1033 Large scale differential gene expression analysis identifies genes associated with Bipolar Disorder

Omar, M. N.; Youssef, M.; Abdellatif, M.

10.1101/770529 — bioinformatics — Posted on 2019-09-22

1034 Analysis of common and rare VPS13C variants in late onset Parkinson disease

Rudakou, U.; Ruskey, J. A.; Krohn, L.; Laurent, S. B.; Spiegelman, D.; Greenbaum, L.; Yahalom, G.; Desautels, A.; Montplaisir, J. Y. Y.; Fahn, S.; Waters, C. H.; Levy, O.; Kehoe, C. M.; Narayan, S.; Dauvilliers, Y.; Dupre, N.; Hassin-Baer, S.; Alcalay, R. N.; Rouleau, G. A.; Fon, E. A.; Gan-Or, Z.

10.1101/705533 — genetics — Posted on 2019-09-22

1035 Genome Scans for Selection and Introgression based on k-nearest Neighbor Techniques

Pfeifer, B.; Alachiotis, N.; Pavlidis, P.; Schimek, M. G.

10.1101/752758 — bioinformatics — Posted on 2019-09-22

1036 Derivation of oligodendrocyte precursor cells from human bone marrow stromal cells and use for re-myelination in the congenitally dysmyelinated brain

Lam, G.; Shea, G. K.-H.; Wu, K. L. K.; Li, M. T.-S.; Kwok, C. H.; Chan, Z. C. K.; Wong, C. Y.; Tsui, A. Y. P.; Shum, D. K. Y.; Chan, Y. S.

10.1101/658997 — neuroscience — Posted on 2019-09-22

1037 A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines

Vieth, B.; Parekh, S.; Ziegenhain, C.; Enard, W.; Hellmann, I.

10.1101/583013 — bioinformatics — Posted on 2019-09-22

1038 Intra- and Inter-Specific Investigations of Skeletal DNA Methylation and Femur Morphology in Primates

Housman, G.; Quillen, E. E.; Stone, A. C.

10.1101/554618 — genomics — Posted on 2019-09-22

1039 Population histories of the United States revealed through fine-scale migration and haplotype analysis

Dai, C. L.; Vazifeh, M. M.; Yeang, C.-H.; Tachet, R.; Wells, R. S.; Vilar, M. G.; Daly, M. J.; Ratti, C.; Martin, A. R.

10.1101/577411 — genetics — Posted on 2019-09-22

1040 Transition scale-spaces: A computational theory for the discretized entorhinal cortex

Waniek, N.

10.1101/543801 — neuroscience — Posted on 2019-09-22

1041 Bub3 and Bub1 maintain the balance of kinetochore-localized Aurora B Kinase and Protein Phosphatase I to Regulate Chromosome Segregation and Anaphase Onset in Meiosis

Cairo, G.; MacKenzie, A. M.; Lacefield, S.

10.1101/778480 — cell biology — Posted on 2019-09-22

1042 A post-ER degradation pathway that relies on protease-dependent internalization from the vacuolar membrane

Lemus, L.; Matic, Z.; Goder, V.

10.1101/778530 — cell biology — Posted on 2019-09-22

1043 High throughput small molecule screening reveals NRF2-dependent and -independent pathways of cellular stress resistance

Lombard, D. B.; Kohler, W.; Guo, A. H.; Gendron, C.; Han, M.; Ding, W.; Lyu, Y.; Li, X.; Shi, X.; Nikolovska-Coleska, Z.; Duan, Y.; Girke, T.; Hsu, A.-L.; Pletcher, S. D.; Miller, R. S.

10.1101/778548 — cell biology — Posted on 2019-09-22

1044 Reduction of spontaneous cortical beta bursts in Parkinson’s disease is linked to symptom severity

Vinding, M. C.; Tsitsi, P.; Waldthaler, J.; Oostenveld, R.; Ingvar, M.; Svenningsson, P.; Lundqvist, D.

10.1101/775494 — neuroscience — Posted on 2019-09-22

1045 Cell type-specific enhancer-promoter connectivity maps in the human brain and disease risk association

Nott, A.; Holtman, I. R.; Coufal, N. G.; Schlachetzki, J. C. M.; Yu, M.; Hu, R.; Han, C. Z.; Pena, M.; Xiao, J.; Wu, Y.; Keuelen, Z.; Pasillas, M. P.; O'Connor, C.; Schafer, S. T.; Shen, Z.; Rissman, R. A.; Brewer, J. B.; Gosselin, D.; Gonda, D. D.; Levy, M. L.; Rosenfeld, M. G.; McVicker, G. P.; Gage, F. H.; Ren, B.; Glass, C. K.

10.1101/778183 — neuroscience — Posted on 2019-09-22

1046 A distinct population of L6 neurons in mouse V1 mediate cross-callosal communication

Liang, Y.; Sun, W.; Lu, R.; Chen, M.; Ji, N.

10.1101/778019 — neuroscience — Posted on 2019-09-22

1047 Genomic Evidence for Phototrophic Oxidation of Small Alkanes in a Member of the Chloroflexi Phylum

Ward, L.; Shih, P. M.; Hemp, J.; Kakegawa, T.; Fischer, W. W.; McGlynn, S. E.

10.1101/531582 — microbiology — Posted on 2019-09-21

1048 Structural requirements of the phytoplasma effector protein SAP54 for causing homeotic transformation of floral organs

Aurin, M.-B.; Haupt, M.; Goerlach, M.; Ruempler, F.; Theissen, G.

10.1101/772699 — plant biology — Posted on 2019-09-21

1049 Rare Variants in the OTOG Gene Are a Frequent Cause of Familial Meniere’s Disease

Roman-Naranjo, P.; Gallego-Martinez, A.; Soto-Varela, A.; Aran, I.; Moleon, M. d. C.; Espinosa-Sanchez, J. M.; Amor-Dorado, J. C.; Batuecas-Caletrio, A.; Perez-Vazquez, P.; Lopez-Escamez, J. A.

10.1101/771527 — genetics — Posted on 2019-09-21

1050 Transthyretin-stabilizing mutation T119M is not associated with protection against vascular disease or death in the UK Biobank

Parker, M. M.; Ticau, S.; Butler, J.; Erbe, D.; Merkel, M.; Aldinc, E.; Hinkle, G.; Nioi, P.

10.1101/771626 — genetics — Posted on 2019-09-21

1051 Secondary Motor Cortex Transforms Spatial Information into Planned Action During Navigation

Olson, J. M.; Li, J.; Montgomery, S. E.; Nitz, D. A.

10.1101/776765 — neuroscience — Posted on 2019-09-21

1052 A simple, versatile and robust centrifugation-based filtration protocol for the isolation and quantification of α-synuclein monomers, oligomers and fibrils: towards improving experimental reproducibility in α-synuclein research

Kumar, S. T.; Donzelli, S.; Chiki, A.; Syed, M. M. K.; Lashuel, H.

10.1101/772160 — neuroscience — Posted on 2019-09-21

1053 The Curli Accessory Protein CsgF Influences the Aggregation of Human Islet Amyloid Polypeptide

Meza-Barajas, O.; Aranda, I.; Binmahfooz, A.; Newell, A.; Jayasinghe, S.

10.1101/772392 — biophysics — Posted on 2019-09-21

1054 A tale of winglets: evolution of flight morphology in stick insects

Zeng, Y.; O'Maley, C.; Singhal, S.; Rahim, F.; Park, S.; Chen, X.; Dudley, R.

10.1101/774067 — evolutionary biology — Posted on 2019-09-21

1055 Massively parallel CRISPRi assays reveal concealed thermodynamic determinants of dCas12a binding

Specht, D. A.; Xu, Y.; Lambert, G.

10.1101/777565 — biophysics — Posted on 2019-09-21

1056 SRPK3 regulates alternative pre-mRNA splicing required for B lymphocyte development and humoral responsiveness

Arends, T.; Taliaferro, J. M.; Peterman, E.; Knapp, J. R.; O'Connor, B. P.; Torres, R. M.; Hagman, J. R.

10.1101/759829 — immunology — Posted on 2019-09-21

1057 A Rat Model Of Somatosensory-Evoked Reflex Seizures Induced By Peripheral Stimulation

Bortel, A.; Yao, Z. S.; Shmuel, A.

10.1101/506352 — neuroscience — Posted on 2019-09-21

1058 Pan-Cancer Study Detects Novel Genetic Risk Variants and Shared Genetic Basis in Two Large Cohorts

Rashkin, S. R.; Graff, R. E.; Kachuri, L.; Thai, K. K.; Alexeeff, S. E.; Blatchins, M. A.; Cavazos, T.; Corley, D. A.; Emami, N. C.; Hoffman, J. D.; Jorgenson, E.; Kushi, L. H.; Meyers, T. J.; Van Den Eeden, S. K.; Ziv, E.; Habel, L. A.; Hoffmann, T. J.; Sakoda, L. C.; Witte, J. S.

10.1101/635367 — genetics — Posted on 2019-09-21

1059 Artificial Intelligence for Ecological and Evolutionary Synthesis

Desjardins-Proulx, P.; Poisot, T.; Gravel, D.

10.1101/161125 — ecology — Posted on 2019-09-21

1060 Endosome-Mediated Epithelial Remodeling Downstream of Hedgehog/Gli Is Required for Tracheoesophageal Separation

Nasr, T.; Mancini, P.; Rankin, S. A.; Edwards, N. A.; Agricola, Z. N.; Kenny, A. P.; Kinney, J. L.; Daniels, K.; Vardanyan, J.; Han, L.; Trisno, S. L.; Wells, J. M.; Cha, S.-W.; Kofron, M.; Zorn, A.

10.1101/777664 — developmental biology — Posted on 2019-09-21

1061 Genome-wide synthetic lethal CRISPR screen identifies FIS1 as a genetic interactor of ALS-linked C9ORF72

Chai, N.; Haney, M. S.; Couthouis, J.; Morgens, D. W.; Benjamin, A.; Wu, K.; Ousey, J.; Fang, S.; Finer, S. M.; Bassik, M. C.; Gitler, A. D.

10.1101/778118 — neuroscience — Posted on 2019-09-21

1062 Discovery of genes required for body axis and limb formation by global identification of retinoic acid regulated enhancers and silencers

Berenguer, M.; Meyer, K. F.; Yin, J.; Duester, G.

10.1101/778191 — developmental biology — Posted on 2019-09-21

1063 Polarity protein distribution on the metaphase furrow regulates hexagon dominated plasma membrane organization in syncytial Drosophila embryos

Dey, B.; Mitra, D.; Das, T.; Sherlekar, A.; Balaji, R.; Rikhy, R.

10.1101/770453 — developmental biology — Posted on 2019-09-21

1064 fCite: a fractional citation tool to quantify an individual’s scientific research output

Kozlowski, L. P.

10.1101/771485 — scientific communication and education — Posted on 2019-09-21

1065 Animal, fungi, and plant genome sequences harbour different non-canonical splice sites

Frey, K.; Pucker, B.

10.1101/616565 — genomics — Posted on 2019-09-21

1066 RNA binding kinase UHMK1 regulates therapy induced metabolic adaptation in BRAFV600 melanoma

Smith, L. K.; Parmenter, T.; Kleinschmidt, M.; Kusnadi, E. P.; Kang, J.; Martin, C. A.; Lau, P.; Lorent, J.; Trigos, A. S.; Ward, T.; Rao, A. D.; Lelliott, E. J.; Sheppard, K. E.; Goode, D.; Hicks, R. J.; Tiganis, T.; Larsson, O.; Simpson, K. J.; Cullinane, C.; Wickramasinghe, V. O.; Pearson, R. B.; McArthur, G. A.

10.1101/626952 — cancer biology — Posted on 2019-09-21

1067 Sub-Optimal Learning of Tactile-Spatial Predictions in Patients with Complex Regional Pain Syndrome

Brown, C. A.; Scholtes, I.; Shenker, N.; Lee, M. C.

10.1101/775676 — neuroscience — Posted on 2019-09-21

1068 A resource-efficient tool for mixed model association analysis of large-scale data

Jiang, L.; Zheng, Z.; Qi, T.; Kemper, K. E.; Wray, N. R.; Visscher, P. M.; Yang, J.

10.1101/598110 — genetics — Posted on 2019-09-21

1069 Interleukin-12 elicits a non-canonical response in B16 melanoma cells to enhance survival

Byrne-Hoffman, C.; Deng, W.; McGrath, O.; Wang, P.; Rojanasakul, Y.; Klinke, D. J.

10.1101/608828 — cancer biology — Posted on 2019-09-21

1070 GPseudoClust: deconvolution of shared pseudo-profiles at single-cell resolution

Strauss, M. E.; Kirk, P. D.; Reid, J. E.; Wernisch, L.

10.1101/567115 — bioinformatics — Posted on 2019-09-21

1071 Gonadotropes in medaka grow long extensions with varicosity-like swellings, projecting towards each other and blood vessels.

Gronlien, H. K.; Fontaine, R.; Hodne, K.; Tysseng, I.; Ager-Wick, E.; Weltzien, F.-A.; Haug, T. M.

10.1101/777151 — cell biology — Posted on 2019-09-21

1072 Nuclear actin cable with multiple branches during yeast meiosis

Takagi, T.; Osumi, M.; Shinohara, A.

10.1101/778100 — cell biology — Posted on 2019-09-21

1073 Enhanced maturation of fast-spiking interneurons driven by mTOR activation

Chu, J.; Fitzgerald, M. L.; Sehgal, N.; Manley, W.; Fitzgerald, S.; Naung, H.; Goldberg, E. M.; Anderson, S. A.

10.1101/777714 — neuroscience — Posted on 2019-09-20

1074 Intraflagellar transport complex B proteins regulate the Hippo effector Yap1 during cardiogenesis

Peralta, M.; Jerabkova, K.; Lucchesi, T.; Ortiz, L. L.; Vitre, B.; Han, D.; Guillemot, L.; Dingare, C.; Sumara, I.; Mercader, N.; Lecaudey, V.; Delaval, B.; Meilhac, S. M.; Vermot, J.

10.1101/777128 — developmental biology — Posted on 2019-09-20

1075 Cyclic transitions between higher order motifs underlie sustained activity in asynchronous sparse recurrent networks

Bojanek, K.; Zhu, Y.; MacLean, J.

10.1101/777219 — neuroscience — Posted on 2019-09-20

1076 How do dairy farmers wish their future farm?

Dalcq, A.-C.; Dogot, T.; Beckers, Y.; Brostaux, Y.; Froidmont, E.; Vanwindekens, F.; Soyeurt, H.

10.1101/777201 — bioengineering — Posted on 2019-09-20

1077 Novel compartmental models of infectious disease transmission

Greenhalgh, S.; Rozins, C.

10.1101/777250 — microbiology — Posted on 2019-09-20

1078 Anatomical tool in the identification of ploids in maize seedlings and potential use in initial stage of double haploides obtainment process

de Oliveira Pires, R. M.; Souza, G. A.; Rezende Vilela, D.; Oliveira dos Santos, H.; Coelho de Castro Vasconcellos, R.; Vilela de Resende Von Pinho, E.

10.1101/777292 — plant biology — Posted on 2019-09-20

1079 Cytoprotective effects of (E)-N-(2-(3, 5-dimethoxystyryl) phenyl) furan-2-carboxamide (BK3C231) against 4-nitroquinoline 1-oxide-induced damage in CCD-18Co human colon fibroblast cells

Tan, H. H.; Thomas, N. F.; Inayat-Hussain, S. H.; Chan, K. M.

10.1101/777193 — pharmacology and toxicology — Posted on 2019-09-20

1080 Monocyte reconstitution and gut microbiota composition after hematopoietic stem cell transplantation

Morjaria, S.; Zhang, A. W.; Kim, S.; Peled, J. U.; Becattini, S.; Littmann, E. R.; Pamer, E. G.; Perales, M.-A.; Abt, M. C.

10.1101/777268 — immunology — Posted on 2019-09-20

1081 Genome wide DNA methylation profiling identifies specific epigenetic features in high-risk cutaneous squamous cell carcinoma.

Hervas-Marin, D.; Higgins, F.; Sanmartin, O.; Lopez-Guerrero, J. A.; Bano, M. C.; Igual, J. C.; Quilis, I.; Sandoval, J.

10.1101/777227 — cancer biology — Posted on 2019-09-20

1082 REPLICCAR II Study: Data Quality Audit in the Paulista Cardiovascular Surgery Registry

ORLANDI, B. M. M.; Mejia, O. A.; Goncharov, M. D.; Rocha, K. N.; Bassolli, L.; Lisboa, L. A.; Dallan, L. A.; Jatene, F. B.; Gabrielle B Borgomoni Camila Perez de Souza Arthur,

10.1101/777243 — scientific communication and education — Posted on 2019-09-20

1083 Lamellipodin tunes cell migration by stabilizing protrusions and promoting adhesion formation

Dimchev, G.; Amiri, B.; Humphries, A. C.; Schaks, M.; Dimchev, V.; Stradal, T. E. B.; Faix, J.; Krause, M.; Way, M.; Falcke, M.; Rottner, K.

10.1101/777326 — cell biology — Posted on 2019-09-20

1084 Manipulation of plant primary metabolism by leaf-mining larvae in the race against leaf senescence

Body, M. J.; Casas, J.; Giron, D.

10.1101/777334 — plant biology — Posted on 2019-09-20

1085 Horizontally acquired quorum sensing regulators recruited by the PhoP regulatory network expand host-adaptation repertoire in the phytopathogen Pectobacterium carotovorum

Bellieny-Rabelo, D.; Nkomo, N. P.; Shyntum, D. Y.; Moleleki, L. N.

10.1101/776476 — microbiology — Posted on 2019-09-20

1086 Antibody against envelope protein from human endogenous retrovirus activates neutrophils in systemic lupus erythematosus

Tokuyama, M.; Gunn, B. M.; Venkataraman, A.; Kong, Y. M.; Kang, I.; Townsend, M.; Costenbader, K.; Alter, G.; Iwasaki, A.

10.1101/776468 — immunology — Posted on 2019-09-20

1087 Allele-specific miRNA-binding analysis identifies candidate target genes for breast cancer risk

Jacinta-Fernandes, A. C.; Xavier, J. M.; Magno, R.; Lage, J.; Maia, A.-T.

10.1101/777318 — cancer biology — Posted on 2019-09-20

1088 Fast targeting of antigen and surface-derived MHCII into degradative compartments implies endosomal prewiring for antigen presentation in B cells.

Hernandez-Perez, S.; Vainio, M.; Kuokkanen, E.; Sustar, V.; Rajala, J.; Paavola, V.; Petrov, P.; Awoniyi, L.; Sarapulov, A.; Forsten, S.; Vihinen, H.; Jokitalo, E.; Bruckbauer, A.; Mattila, P.

10.1101/775882 — immunology — Posted on 2019-09-20

1089 Regulatory divergence in vgll3 underlies variation in age at maturity in male Atlantic salmon

Verta, J.-P.; Debes, P. V.; Piavchenko, N.; Ruokolainen, A.; Ovaskainen, O.; Moustakas-Verho, J. E.; Tillanen, S.; Parre, N.; Aykanat, T.; Erkinaro, J.; Primmer, C. R.

10.1101/777300 — evolutionary biology — Posted on 2019-09-20

1090 The SONATA Data Format for Efficient Description of Large-Scale Network Models

Dai, K.; Hernando, J.; Billeh, Y. N.; Gratiy, S. L.; Planas, J.; Davison, A. P.; Dura-Bernal, S.; Gleeson, P.; Devresse, A.; Dichter, B. K.; Gevaert, M.; King, J. G.; Van Geit, W. A. H.; Povolotsky, A. V.; Muller, E.; Courcol, J.-D.; Arkhipov, A.

10.1101/625491 — neuroscience — Posted on 2019-09-20

1091 Sub-Optimal Learning of Tactile-Spatial Predictions in Patients with Complex Regional Pain Syndrome

Brown, C. A.; Scholtes, I.; Shenker, N.; Lee, M. C.

10.1101/775676 — neuroscience — Posted on 2019-09-20

1092 Cryo-EM structure of the RNA-rich plant mitochondrial ribosome

Waltz, F.; Soufari, H.; Bochler, A.; Giege, P.; Hashem, Y.

10.1101/777342 — molecular biology — Posted on 2019-09-20

1093 Dirichlet-multinomial modelling outperforms alternatives for analysis of microbiome and other ecological count data

Harrison, J.; Calder, W. J.; Shastry, V.; Buerkle, C. A.

10.1101/711317 — bioinformatics — Posted on 2019-09-20

1094 Effects of unilateral cortical resection of the visual cortex on bilateral human white matter

Maallo, A. M. S.; Freud, E.; Liu, T. T.; Patterson, C.; Behrmann, M.

10.1101/689778 — neuroscience — Posted on 2019-09-20

1095 Development of mouse and human cochlea at single cell resolution

Yu, K. S.; Frumm, S. M.; Park, J. S.; Lee, K. P.; Wong, D. M.; Byrnes, L. E.; Knox, S.; Sneddon, J. B.; Tward, A. D.

10.1101/739680 — bioinformatics — Posted on 2019-09-20

1096 Seed Coat Pattern QTL and Development in Cowpea (Vigna unguiculata Walp.)

Herniter, I. A.; Lo, R.; Munoz-Amatrain, M.; Lo, S.; Guo, Y.-N.; Huynh, B.-L.; Lucas, M.; Jia, Z.; Roberts, P. A.; Lonardi, S.; Close, T. J.

10.1101/514455 — genetics — Posted on 2019-09-20

1097 SMNN: Batch Effect Correction for Single-cell RNA-seq data via Supervised Mutual Nearest Neighbor Detection

Yang, Y.; Li, G.; Qian, H.; Wilhelmsen, K.; Shen, Y.; Li, Y.

10.1101/672261 — bioinformatics — Posted on 2019-09-20

1098 Accurate allele frequencies from ultra-low coverage pool-seq samples in evolve-and-resequence experiments

Tilk, S.; Bergland, A. O.; Goodman, A.; Schmidt, P.; Petrov, D.; Greenblum, S.

10.1101/244004 — evolutionary biology — Posted on 2019-09-20

1099 Direct detection of circulating microRNA-122 using dynamic chemical labelling with single molecule detection overcomes stability and isomiR challenges for biomarker qualification

Lopez-Longarela, B.; Morrison, E. E.; Tranter, J. D.; Chahman-Vos, L.; Leonard, J.-F.; Gautier, J.-C.; Laurent, S.; Lartigau, A.; Boitier, E.; Sautier, L.; Carmona-Saez, P.; Martorell-Marugan, J.; Mellanby, R. J.; Pernagallo, S.; Ilyine, H.; Rissin, D. M.; Duffy, D. C.; Dear, J. W.; Diaz-Mochon, J. J.

10.1101/777458 — pharmacology and toxicology — Posted on 2019-09-20

1100 Coupling chromatin structure and dynamics by live super-resolution imaging

Barth, R.; Bystricky, K.; Shaban, H.

10.1101/777482 — biophysics — Posted on 2019-09-20

1101 Interleukin-33 promotes type 1 cytokine expression via p38 MAPK in human natural killer cells

Ohayon, D. E.; Ali, A.; Alarcon, P. C.; Krishnamurthy, D.; Kottyan, L.; Borchers, M.; Waggoner, S. N.

10.1101/777847 — immunology — Posted on 2019-09-20

1102 Elevated levels of interleukin-27 in early life compromise protective immunity during neonatal sepsis

Seman, B. G.; Vance, J. K.; Rawson, T. W.; Witt, M. R.; Huckaby, A. B.; Povroznik, J. M.; Bradford, S. D.; Barbier, M.; Robinson, C. M.

10.1101/777839 — immunology — Posted on 2019-09-20

1103 Lipid droplet biogenesis is a liquid phase separation spatially regulated by seipin and membrane curvature.

Zoni, V.; Campomanes, P.; Khaddaj, R.; Thiam, A. R.; Schneiter, R.; Vanni, S.

10.1101/777466 — cell biology — Posted on 2019-09-20

1104 Melanoma plasticity is controlled by a TRIM28-JUNB mediated switch

Nyberg, W. A.; He, T.; Sjostrand, M.; Velasquez-Pulgarin, D. A.; Pelle, L.; Covacu, R.; Espinosa, A.

10.1101/777771 — cancer biology — Posted on 2019-09-20

1105 Boiling Acid Mimics Intracellular Giant Virus Genome Release

Schrad, J. R.; Abrahao, J. S.; Cortines, J. R.; Parent, K. N.

10.1101/777854 — biophysics — Posted on 2019-09-20

1106 Quantification of reactive oxygen species production by the red fluorescent proteins KillerRed, SuperNova and mCherry.

Onukwufor, J. O.; Trewin, A. J.; Baran, T. M.; Almast, A.; Foster, T. H.; Wojtovich, A. P.

10.1101/777417 — biochemistry — Posted on 2019-09-20

1107 EPRS Regulates Proline-rich Pro-fibrotic Protein Synthesis during Cardiac Fibrosis

Wu, J.; Subbaiah, K. C. V.; Xie, L. H.; Jiang, F.; Mickelsen, D.; Myers, J. R.; Tang, W. H. W.; Yao, P.

10.1101/777490 — pathology — Posted on 2019-09-20

1108 Mitochondria define intestinal stem cell differentiation downstream of a FOXO/Notch axis

Ludikhuize, M. C.; Meerlo, M.; Pages Gallego, M.; Burgaya Julia, M.; Nguyen, N. T. B.; Brombacher, E. C.; Paik, J.-H.; Burgering, B. M. T.; Rodriguez Colman, M. J.

10.1101/777391 — cell biology — Posted on 2019-09-20

1109 The Arabidopsis receptor kinase STRUBBELIG regulates the response to cellulose deficiency

Chaudhary, A.; Chen, X.; Gao, J.; Lesniewska, B.; Hammerl, R.; Dawid, C.; Schneitz, K.

10.1101/775775 — plant biology — Posted on 2019-09-20

1110 The effects of e-cigarette vapor exposure on the transcriptome and virulence of Streptococcus pneumoniae

Bagale, K.; Paudel, S.; Cagle, H.; Sigel, E.; Kulkarni, R.

10.1101/776872 — microbiology — Posted on 2019-09-20

1111 Host circadian clocks do not set the schedule for the within-host replication of malaria parasites

O'Donnell, A. J.; Prior, K. F.; Reece, S. E.

10.1101/777011 — ecology — Posted on 2019-09-20

1112 Analysing plasma membrane asymmetry of lipid organisation by fluorescence lifetime and correlation spectroscopy

Gupta, A.; Korte, T.; Herrmann, A.; Wohland, T.

10.1101/776831 — biophysics — Posted on 2019-09-20

1113 BrainNET: Inference of brain network topology using Machine Learning

Murugesan, G. K.; Nalawade, S.; Bangalore Yogananda, C. G.; Davenport, E.; Wagner, B.; Kim, W. H.; Maldjian, J. A.

10.1101/776641 — bioengineering — Posted on 2019-09-20

1114 Effects of low temperature and cold-acclimation on photoinhibition and singlet oxygen production in four natural accessions of Arabidopsis

Mattila, H.; Mishra, K. B.; Kuusisto, I.; Mishra, A.; Novotna, K.; Sebela, D.; Tyystjarvi, E.

10.1101/777060 — plant biology — Posted on 2019-09-20

1115 Photosystem II does not convert nascent oxygen to the poisonous singlet form

Mattila, H.; Tyystjarvi, E.

10.1101/777029 — plant biology — Posted on 2019-09-20

1116 The signal and the noise - characteristics of antisense RNA in complex microbial communities

Michaelsen, T. Y.; Brandt, J.; Singleton, C. M.; Kirkegaard, R.; Segata, N.; Albertsen, M.

10.1101/776971 — microbiology — Posted on 2019-09-20

1117 Targeting the methyltransferase SETD8 impairs tumor cell survival and overcomes drug resistance independently of p53 status in multiple myeloma

Herviou, L.; IZARD, F.; Karmous-Gadacha, O.; Gourzones, C.; Bellanger, C.; Desmedt, E.; Ma, A.; Vincent, L.; Cartron, G.; Jin, J.; De Bruyne, E.; Grimaud, C.; JULIEN, E.; Moreaux, J.

10.1101/776930 — cancer biology — Posted on 2019-09-20

1118 Dinoroseobacter shibae outer membrane vesicles are enriched for the chromosome dimer resolution site dif

Wang, H.; Beier, N.; Boedeker, C.; Sztajer, H.; Henke, P.; Neumann-Schaal, M.; Mansky, J.; Rohde, M.; Overmann, J.; Kucklick, M.; Engelmann, S.; Tomasch, J.; Wagner-Dobler, I.

10.1101/764696 — microbiology — Posted on 2019-09-20

1119 Active transcription and Orc1 drive chromatin association of the AAA+ ATPase Pch2 during meiotic G2/prophase

Cardoso da Silva, R.; Villar-Fernandez, M. A.; Vader, G.

10.1101/777003 — genetics — Posted on 2019-09-20

1120 Commensal-derived succinate enhances tuft cell specification and suppresses ileal inflammation

Banerjee, A.; Herring, C. A.; Kim, H.; Chen, B.; Simmons, A. J.; Southard-Smith, A. N.; White, J. R.; Ramirez Solano, M. A.; Scoville, E. A.; Liu, Q.; Washington, M. K.; Lau, K. S.

10.1101/776724 — cell biology — Posted on 2019-09-20

1121 Bird Song Learning is Mutually Beneficial for Tutee and Tutor

Beecher, M. D.; Akcay, C.; Campbell, S. E.

10.1101/774216 — animal behavior and cognition — Posted on 2019-09-20

1122 Exaiptasia diaphana from the Great Barrier Reef: a valuable resource for coral symbiosis research

Dungan, A. M.; Hartman, L. M.; Tortorelli, G.; Belderok, R.; Lamb, A. M.; Pisan, L.; McFadden, G. I.; Blackall, L. L.; van Oppen, M. J. H.

10.1101/775510 — zoology — Posted on 2019-09-20

1123 Do Walking Muscle Synergies Influence Propensity of Severe Slipping?

Nazifi, M. M.; Beschorner, K.; Hur, P.

10.1101/776732 — neuroscience — Posted on 2019-09-20

1124 Perceptual metacognition of human faces is causally supported by function of the lateral prefrontal cortex

Lapate, R. C.; Samaha, J.; Rokers, B.; Postle, B. R.; Davidson, R. J.

10.1101/772632 — neuroscience — Posted on 2019-09-20

1125 Secondary Motor Cortex Transforms Spatial Information into Planned Action During Navigation

Olson, J. M.; Li, J.; Montgomery, S. E.; Nitz, D. A.

10.1101/776765 — neuroscience — Posted on 2019-09-20

1126 Spatial whitening in the retina may be necessary for V1 to learn a sparse representation of natural scenes

Dodds, E. M.; Livezey, J. A.; DeWeese, M. R.

10.1101/776799 — neuroscience — Posted on 2019-09-20

1127 Inter-specific variation of maternal thyroid hormones associate with migration, mode of development, and captivity: a phylogenetic comparative analysis

Hsu, B.-Y.; Pakanen, V.-M.; Boner, W.; Eeva, T.; Doligez, B.; Groothuis, T. G. G.; Korpimäki, E.; Laaksonen, T.; Lelono, A.; Monaghan, P.; Sarraude, T.; Tschirren, B.; Thomson, R. L.; Tolvanen, J.; Vasquez, R. A.; Ruuskanen, S.

10.1101/775981 — evolutionary biology — Posted on 2019-09-20

1128 Carbon Assimilation Strategies in Ultrabasic Groundwater: Clues from the Integrated Study of a Serpentinization-Influenced Aquifer

Seyler, L. M.; Brazelton, W.; McLean, C.; Putman, L. I.; Hyer, A.; Kubo, M.; Hoehler, T.; Cardace, D.; Schrenk, M. O.

10.1101/776849 — microbiology — Posted on 2019-09-20

1129 Towards Intelligent Intra-cortical BMI (i2BMI):Low-power Neuromorphic Decoders that outperform Kalman Filters

Shaikh, S.; So, R.; Sibindi, T.; Libedinsky, C.; Basu, A.

10.1101/772988 — bioengineering — Posted on 2019-09-20

1130 Sex chromosome evolution in muscid flies

Meisel, R.; Olafson, P.; Adhikari, K.; Guerrero, F. D.; Konganti, K.; Benoit, J.

10.1101/655845 — evolutionary biology — Posted on 2019-09-20

1131 Transcranial photoacoustic imaging of NMDA-evoked focal circuit dynamics in rat hippocampus

Kang, J.; Kadam, S. D.; Elmore, J. S.; Sullivan, B. J.; Valentine, H.; Malla, A. P.; Harraz, M. M.; Rahmim, A.; Kang, J. U.; Loew, L. M.; Baumann, M.; Grace, A. A.; Gjedde, A.; Boctor, E. M.; Wong, D. F.

10.1101/308585 — neuroscience — Posted on 2019-09-20

1132 Draft genome of a porcupinefish, Diodon Holocanthus

Xu, M.; Su, X.; Zhang, M.; Li, M.; Huang, X.; Fan, G.; Liu, X.; Zhang, H.

10.1101/775387 — genomics — Posted on 2019-09-20

1133 Social isolation impacts late-life socio-cognitive decline in APP/PS1 mice

Rens, E.; D'Hooge, R.; Van der Jeugd, A.

10.1101/777441 — neuroscience — Posted on 2019-09-20

1134 Isolation housing exacerbates Alzheimer’s Disease phenotype in aged APP KI mice

Laroy, M.; D'Hooge, R.; Van der Jeugd, A.

10.1101/777524 — neuroscience — Posted on 2019-09-20

1135 Gene capture by transposable elements leads to epigenetic conflict

Muyle, A.; Seymour, D. K.; Darzentas, N.; Gaut, B. S.; Bousios, A.

10.1101/777037 — genomics — Posted on 2019-09-20

1136 A Human Accelerated Region participates in early human forebrain patterning and expansion

Oliver, G.; Acosta, S.; Sidhaye, J.; Fiore, L.; Rollan, I.; Iacono, G.; Misharin, A. V.; Takata, N.; Sikora, M.; Joshi, N.; Xu, B.; Willerslev, E.; Heyn, H.; Manzanares, M.; Knoblich, J.

10.1101/777235 — developmental biology — Posted on 2019-09-20

1137 Highly efficient and specific genome editing in human cells with paired CRISPR-Cas9 nickase ribonucleoproteins

Lamberth, J.; Daley, L.; Natarajan, P.; Khoruzhenko, S.; Becker, N.; Taglicht, D.; Davis, G. D.; Ji, Q.

10.1101/766493 — molecular biology — Posted on 2019-09-20

1138 Function of TRIP6 in brain-specific ciliogenesis

Shukla, S.; Urbanek, P.; Frappart, L.; Haenold, R.; Nagel, S.; Monajembashi, S.; Grigaravicius, P.; Min, W. K.; Tapias, A.; Kassel, O.; Heuer, H.; Wang, Z.-Q.; Ploubidou, A.; Herrlich, P. A.

10.1101/777052 — cell biology — Posted on 2019-09-20

1139 Massively parallel CRISPRi assays reveal concealed thermodynamic determinants of dCas12a binding

Lambert, G.; Specht, D. A.; Xu, Y.

10.1101/777565 — biophysics — Posted on 2019-09-20

1140 Beyond target-decoy competition: stable validation of peptide and protein identifications in mass spectrometry-based discovery proteomics

Coute, Y.; Bruley, C.; Burger, T.

10.1101/765057 — bioinformatics — Posted on 2019-09-20

1141 Alzheimer’s genetic risk factor FERMT2 (Kindlin-2) is regulated by risk allele-binding of miR-4504 and leads to synaptic dysfunction in an APP-dependent manner

Eysert, F.; Coulon, A.; Boscher, E.; Vreulx, A.-C.; Flaig, A.; Mendes, T.; Hughes, S.; Grenier-Boley, B.; Hanoulle, X.; Demiautte, F.; Marttinen, M.; Takalo, M.; Amouyel, P.; Desai, S.; Pike, I.; Hiltunen, M.; Farinelli, M.; Delay, C.; Malmanche, N.; Hebert, S.; Dumont, J.; Kilinc, D.; Lambert, J.-C.; Chapuis, J.

10.1101/767194 — neuroscience — Posted on 2019-09-20

1142 DEFORMATION BASED MORPHOMETRY STUDY OF LONGITUDINAL MRI CHANGES IN BEHAVIORAL VARIANT FRONTOTEMPORAL DEMENTIA

Manera, A. L.; Dadar, M.; Collins, D. L.; Ducharme, S.

10.1101/670646 — neuroscience — Posted on 2019-09-20

1143 DEFORMATION BASED MORPHOMETRY STUDY OF LONGITUDINAL MRI CHANGES IN BEHAVIORAL VARIANT FRONTOTEMPORAL DEMENTIA

Manera, A. L.; Dadar, M.; Collins, D. L.; Ducharme, S.

10.1101/670646 — neuroscience — Posted on 2019-09-20

1144 Fluctuations in the homeostatic neural circuitry influence consistency in choices between cultural goods

Azzalini, D.; Buot, A.; Palminteri, S.; Tallon-Baudry, C.

10.1101/776047 — neuroscience — Posted on 2019-09-20

1145 Fluctuations in the homeostatic neural circuitry influence consistency in choices between cultural goods

Azzalini, D.; Buot, A.; Palminteri, S.; Tallon-Baudry, C.

10.1101/776047 — neuroscience — Posted on 2019-09-20

1146 Robust effects of cortical feedback on thalamic firing mode during naturalistic stimulation

Spacek, M. A.; Born, G.; Crombie, D.; Katzner, S.; Busse, L.

10.1101/776237 — neuroscience — Posted on 2019-09-20

1147 Establishment of Wolbachia strain wAlbB in Malaysian populations of Aedes aegypti for dengue control

Nazni, W. A.; Hoffmann, A. A.; Noor Afizah, A.; Cheong, Y. L.; Mancini, M. V.; Golding, N.; Kamarul, M. R. G.; Arif, A. K. M.; Thohir, H.; Nur Syamimi, H. S.; Nur Zatil Aqmar, M. Z.; Nur Ruqqayah, M. M.; Siti Nor Syazwani, A.; Faiz, A.; Irfan, M. N. F. R.; Rubaaini, S.; Nuradila, N.; Nizam, M. M. N.; Mohamad Irwan, M. S.; Endersby-Harshman, N. M.; White, V. L.; Ant, T. H.; Herd, C.; Hasnor, H. A.; Abu Bakar, R.; Hapsah, M. D.; Khadijah, K.; Kamilan, D.; Lee, S. C.; Paid, M.; Fadzilah, K.; Gill, B. S.; Lee, H. L.; Sinkins, S. P.

10.1101/775965 — microbiology — Posted on 2019-09-20

1148 Establishment of Wolbachia strain wAlbB in Malaysian populations of Aedes aegypti for dengue control

10.1101/775965 — microbiology — Posted on 2019-09-20

1149 A Structurally Validated Sequence Alignment of All 497 Typical Human Protein Kinase Domains

Modi, V.; Dunbrack, R.

10.1101/776740 — bioinformatics — Posted on 2019-09-20

1150 Differential effects of farming practice on cuckoo bumblebee communities in relation to their hosts

Howard, C. E.; Gilbert, J. D.; Austin, A. J.

10.1101/774406 — ecology — Posted on 2019-09-20

1151 Exposure to the RXR agonist SR11237 in early life causes disturbed skeletal morphogenesis in a rat model

Dupuis, H.; Pest, M. A.; Hadzic, E.; Vo, T. X.; Hardy, D. B.; Beier, F.

10.1101/774851 — developmental biology — Posted on 2019-09-20

1152 Photon-statistics in sensitized emission FRET and FLIM: a comparative theoretical analysis

Esposito, A.

10.1101/774919 — biophysics — Posted on 2019-09-20

1153 A novel role for SHARPIN in amyloid-beta phagocytosis and inflammation by peripheral blood-derived macrophages in Alzheimers disease

Krishnan, D.; Gopala, S.; Menon, R. N.; PS, M.

10.1101/732164 — molecular biology — Posted on 2019-09-20

1154 Assortative mating and the dynamical decoupling of genetic admixture levels from phenotypes that differ between source populations

Kim, J.; Edge, M. D.; Goldberg, A.; Rosenberg, N. A.

10.1101/773663 — evolutionary biology — Posted on 2019-09-20

1155 Rigbox: An Open-source Toolbox for Probing Neurons and Behavior

Bhagat, J.; Wells, M. J.; Peters, A. J.; Harris, K. D.; Carandini, M.; Burgess, C. P.

10.1101/672204 — neuroscience — Posted on 2019-09-20

1156 DNA breaks are key contributors to the cost of antibiotic resistance

Balbontin, R.; Gordo, I.

10.1101/756767 — microbiology — Posted on 2019-09-20

1157 Bayesian network analysis complements Mendelian randomization approaches for exploratory analysis of causal relationships in complex data

Howey, R.; Shin, S.-Y.; Relton, C.; Davey Smith, G.; Cordell, H. J.

10.1101/639864 — genetics — Posted on 2019-09-20

1158 Mutual Information Analysis of Neural Representations of Speech in Noise in the Aging Midbrain

Zan, P.; Presacco, A.; Anderson, S.; Simon, J. Z.

10.1101/619528 — neuroscience — Posted on 2019-09-20

1159 Microtubule Binding Kinetics of Membrane-bound Kinesin Predicts High Motor Copy Numbers on Intracellular Cargo

Jiang, R.; Vandal, S. R.; Park, S.; Majd, S.; Tüzel, E.; Hancock, W. O.

10.1101/627174 — biophysics — Posted on 2019-09-20

1160 Teachers’ choice of content and consideration of controversial and sensitive issues in teaching of secondary school genetics

Aivelo, T.; Uitto, A.

10.1101/350710 — scientific communication and education — Posted on 2019-09-20

1161 An evolutionary recent IFN-IL-6-CEBP axis is linked to monocyte expansion and tuberculosis severity in humans

Delgobo, M.; Mendes, D. A.; Kozlova, E.; Rocha, E. L.; Rodrigues-Luiz, G. F.; Mascarin, L.; Dias, G.; Patricio, D. O.; Dierckx, T.; Bicca, M. A.; Breton, G.; Menezes, Y. K. T.; Starick, M.; Rovaris, D.; Moral, J. D.; Mansur, D. S.; Weyenbergh, J. V.; Bafica, A.

10.1101/514943 — immunology — Posted on 2019-09-20

1162 High throughput genotyping of structural variations in a complex plant genome using an original Affymetrix(R) Axiom(R) array

Mabire, C.; Duarte, J.; Darracq, A.; Pirani, A.; Rimbert, H.; Madur, D.; Combes, V.; Vitte, C.; Praud, S.; Riviere, N.; Joets, J.; Pichon, J.-P.; Nicolas, S. D.

10.1101/507756 — genomics — Posted on 2019-09-20

1163 Reliable variant calling during runtime of Illumina sequencing

Loka, T. P.; Tausch, S. H.; Renard, B. Y.

10.1101/387662 — bioinformatics — Posted on 2019-09-20

1164 Analysis and subsequent molecular docking of selected phytochemicals with SLC6A3 and SLC6A4 as potential therapeutic agents for Obsessive-Compulsive Disorder (OCD)

Warshaneyan, S. S.; Srivastava, P.

10.1101/776922 — bioinformatics — Posted on 2019-09-20

1165 ConnectedReads: machine-learning optimized long-range genome analysis workflow for next-generation sequencing

Su, C.-T.; Weng, S.; Li, Y.-L.; Chang, M.-T.

10.1101/776807 — bioinformatics — Posted on 2019-09-20

1166 Short paired-end reads trump long single-end reads for expression analysis

Freedman, A. H.; Gaspar, J. M.; Sackton, T. B.

10.1101/777409 — bioinformatics — Posted on 2019-09-20

1167 Short residence times of DNA-bound transcription factors can reduce gene expression noise and increase the transmission of information in a gene regulation system

Azpeitia, E.; Wagner, A.

10.1101/776955 — systems biology — Posted on 2019-09-20

1168 Source of additive genetic variance of important traits

Liu, L.; Wang, Y.; Zhang, D.; Chen, X.; Su, Z.; He, X.

10.1101/776898 — evolutionary biology — Posted on 2019-09-20

1169 Trends of the Florida manatee (Trichechus manatus latirostris) rehabilitation admissions 1991-2017.

Ball, R.; Zgibor, J.; Malmi, M.

10.1101/773713 — zoology — Posted on 2019-09-20

1170 Transient receptor vanilloid 4 (TRPV4) channels are essential for alveolar epithelial cell function

Weber, J.; Chao, Y.-K.; Kannler, M.; Krasteva-Christ, G.; Rajan, S.; Yildirim, O. A.; Brosien, M.; Schredelseker, J.; Weissmann, N.; grimm, c.; Gudermann, T.; Dietrich, A.

10.1101/775668 — cell biology — Posted on 2019-09-20

1171 Unexpected predicted length variation for the coding sequence of the sleep related gene, BHLHE41 in gorilla amidst strong purifying selection across mammals

Whittall, J.; Unadkat, K. B.

10.1101/773770 — bioinformatics — Posted on 2019-09-20

1172 Synergic action of Vitamin D3 and 17β-estradiol on behavioral impairments induced by unpredictable mild stress in the adult ovariectomized female rats

Fedotova, J.; Baranenko, D.; Mironova, V.; van den Tol, A. J. M.

10.1101/773739 — animal behavior and cognition — Posted on 2019-09-20

1173 A system for tracking whisker kinematics and whisker shape in three dimensions

Petersen, R. S.; Colins Rodriguez, A.; Campagner, D.; Evans, M.; Loft, M.

10.1101/773697 — neuroscience — Posted on 2019-09-20

1174 A multivariate phylogenetic comparative method incorporating a flexible function between discrete and continuous traits

Haba, Y.; Kutsukake, N.

10.1101/776617 — evolutionary biology — Posted on 2019-09-20

1175 FBL17 targets CDT1a for degradation in early S-phase to prevent Arabidopsis genome instability

Gutierrez, C.; Desvoyes, B.; Noir, S.; Masoud, K.; Lopez, M. I.; Genschik, P.

10.1101/774109 — plant biology — Posted on 2019-09-20

1176 Effects of social defeat stress and fluoxetine treatment on neurogenesis and behaviour in mice that lack zinc transporter 3 (ZnT3) and vesicular zinc

McAllister, B. B.; Pochakom, A.; Fu, S.; Dyck, R. H.

10.1101/776633 — neuroscience — Posted on 2019-09-20

1177 Dysregulation of external globus pallidus-subthalamic nucleus network dynamics in Parkinsonian mice

Kovaleski, R. F.; Callahan, J.; Chazalon, M.; Baufreton, J. M.; Bevan, M. D.

10.1101/774091 — neuroscience — Posted on 2019-09-20

1178 C9orf72-associated arginine-rich dipeptide repeats induce RNA-dependent accumulation of Staufen in nucleus

Kim, E. S.; Chung, C. G.; Kim, Y. H.; Cha, I. J.; Park, J. H.; Kim, J.; Ha, C. M.; Kim, H.-J.; Lee, S. B.

10.1101/773796 — genetics — Posted on 2019-09-20

1179 Assortative mating and the dynamical decoupling of genetic admixture levels from phenotypes that differ between source populations

Kim, J.; Edge, M. D.; Goldberg, A.; Rosenberg, N. A.

10.1101/773663 — evolutionary biology — Posted on 2019-09-20

1180 Dynamic analysis of pulsed cisplatin identifies effectors of resistance in lung adenocarcinoma

Hastings, J. F.; Gonzalez-Rajal, A.; Han, J. Z.; McCloy, R. A.; O'Donnell, Y. E.; Phimmachanh, M.; Murphy, A. D.; Nagrial, A.; Daneshvar, D.; Chin, V.; Watkins, D. N.; Burgess, A.; Croucher, D. R.

10.1101/775924 — cancer biology — Posted on 2019-09-20

1181 Diversity analysis and metagenomic insights into the Antibiotic Resistance and Metal Resistances among Hot Spring Bacteriobiome- insinuating inherent environmental baseline levels of Antibiotic and Metal tolerance

Najar, I. N.; Sherpa, M. T.; Das, S.; Thakur, N.

10.1101/773788 — microbiology — Posted on 2019-09-20

1182 An analysis and optimization of growth condition requirements of the fast-growing bacterium Vibrio natriegens

Örencik, C.; Mueller, S.; Kirner, T.; Amann, E. P.

10.1101/775437 — microbiology — Posted on 2019-09-20

1183 Aceclofenac Fast Dispersible Tablet Formulations: Effect of different concentration levels of Avicel PH102 on the compactional, mechanical and drug release characteristics

Shoaib, M. H.; Yasmin, R.; Ahmed, F. R.; Qazi, F.; Ali, H.; Zafar, F.

10.1101/773671 — pharmacology and toxicology — Posted on 2019-09-20

1184 State-dependent differences in the frequency of TMS-evoked potentials

Stanfield, C. T.; Wiener, M.

10.1101/773705 — neuroscience — Posted on 2019-09-20

1185 The Evolution of Social Organization: Climate Influences Variation in Drosophilid Social Networks

Jezovit, J. A.; Rooke, R.; Schneider, J.; Levine, J. D.

10.1101/776708 — evolutionary biology — Posted on 2019-09-20

1186 Nest microbiota and pathogen abundance impact hatching success in sea turtle conservation

Hoh, D. Z.; Lin, Y.-f.; Liu, W.-A.; Sidique, S. N. M.; Tsai, I. J.

10.1101/776773 — ecology — Posted on 2019-09-20

1187 A novel nuclear speckle factor, USP42, promotes homologous recombination repair by resolving DNA double-strand break induced R-loop

Matsui, M.; Sakasai, R.; Abe, M.; Kimura, Y.; Kajita, S.; Torii, W.; Katsuki, Y.; Ishiai, M.; Iwabuchi, K.; Takata, M.; Nishi, R.

10.1101/776823 — cell biology — Posted on 2019-09-20

1188 A Structurally Validated Sequence Alignmentof All 497 Typical Human Protein Kinase Domains

Modi, V.; Dunbrack, R.

10.1101/776740 — bioinformatics — Posted on 2019-09-20

1189 Adiponectin and related C1q/TNF-related proteins bind selectively to anionic phospholipids and sphingolipids

Ye, J. J.; Bian, X.; Lim, J.; Medzhitov, R.

10.1101/776690 — biochemistry — Posted on 2019-09-20

1190 Identification of clinically approved small molecules that inhibit growth and promote surface remodeling in the African trypanosome

Walsh, M. E.; Naudzius, E. M.; Diaz, S. J.; Wismar, T. W.; Martchenko, M.; Schulz, D.

10.1101/776658 — molecular biology — Posted on 2019-09-20

1191 KMT5C displays robust retention and liquid-like behavior in phase separated heterochromatin

Strickfaden, H.; Missiaen, K.; Hendzel, M. J.; Underhill, D. A.

10.1101/776625 — cell biology — Posted on 2019-09-20

1192 Genome-wide association analyses identify variants in IRF4 associated with Acute Myeloid Leukemia and Myelodysplastic Syndrome susceptibility

Wang, J.; Clay-Gilmour, A.; Karaesmen, E.; Rizvi, A. A.; Zhu, Q.; Yan, L.; Preus, L. M.; Liu, S.; Wang, Y.; Griffiths, E.; Stram, D. O.; Pooler, L.; Sheng, X.; Haiman, C. A.; Van Den Berg, D.; Webb, A.; Brock, G.; Spellman, S.; Pasquini, M.; McCarthy, P.; Allan, J.; Stölzel, F.; Onel, K.; Hahn, T.; Sucheston-Campbell, L.

10.1101/773952 — genomics — Posted on 2019-09-20

1193 Robust effects of cortical feedback on thalamic firing mode during naturalistic stimulation

Spacek, M. A.; Born, G.; Crombie, D.; Katzner, S. A.; Busse, L.

10.1101/776237 — neuroscience — Posted on 2019-09-20

1194 Genome-wide dynamics of RNA synthesis, processing and degradation without RNA metabolic labeling

Furlan, M.; Galeota, E.; del Gaudio, N.; Dassi, E.; Caselle, M.; de Pretis, S.; Pelizzola, M.

10.1101/520155 — genomics — Posted on 2019-09-20

1195 Allosteric Motions of the CRISPR-Cas9 HNH Nuclease Probed by NMR and Molecular Dynamics

East, K. W.; Newton, J. C.; Morzan, U. N.; Acharya, A.; Skeens, E.; Jogl, G.; Batista, V. S.; Palermo, G.; Lisi, G. P.

10.1101/660613 — biophysics — Posted on 2019-09-20

1196 Does macroscale grey matter morphometry reflect personality?

Valk, S. L.; Hoffstaedter, F.; Camilleri, J.; Kochunov, P.; Yeo, B. T. T.; Eickhoff, S. B.

10.1101/645945 — neuroscience — Posted on 2019-09-20

1197 Incorporating uncertainty is essential to macroevolutionary inferences: Grass, grit, and the evolution of kangaroos

Brennan, I. G.

10.1101/772558 — evolutionary biology — Posted on 2019-09-20

1198 A multi-seasonal model of plant-nematode interactions and its use to identify optimal plant resistance deployment strategies

Nilusmas, S.; Mercat, M.; Perrot, T.; Djian-Caporalino, C.; Castagnone-Sereno, P.; Touzeau, S.; Calcagno, V.; Mailleret, L.

10.1101/774869 — ecology — Posted on 2019-09-20

1199 Sensorimotor adaptation and cue reweighting compensate for distorted 3D information, accounting for paradoxical perception-action dissociations

Cesanek, E.; Taylor, J. A.; Domini, F.

10.1101/540187 — neuroscience — Posted on 2019-09-19

1200 Sema3A Facilitates a Retrograde Death Signal via CRMP4-Dynein Complex Formation in ALS Motor Axons

Maimon, R.; Ankol, L.; Weissova, R.; Tank, E.; Gradus, T.; Opatowsky, Y.; Barmada, S.; Balastik, M.; PERLSON, E.

10.1101/774737 — neuroscience — Posted on 2019-09-19

1201 Deep Learning Based Large-scale Histological Tau Protein Mapping for Neuroimaging Biomarker Validation in Alzheimer’s Disease

Alegro, M.; Chen, Y.; Ovando, D.; Heinsen, H.; Eser, R.; Tosun, D.; Grinberg, L.

10.1101/698902 — neuroscience — Posted on 2019-09-19

1202 Analysis of solid-state heparin samples by ATR-FTIR spectroscopy

Devlin, A.; Mycroft-West, C.; Turnbull, J.; Guerrini, M.; Yates, E.; Skidmore, M.

10.1101/538074 — biochemistry — Posted on 2019-09-19

1203 Critical residues in the aminoglycoside-resistance 16S rRNA (m7G1405) methyltransferase RmtC play distinct roles in 30S substrate recognition

Nosrati, M.; Dey, D.; Mehrani, A.; Strassler, S. E.; Zelinskaya, N.; Hoffer, E. D.; Stagg, S. M.; Dunham, C. M.; Conn, G. L.

10.1101/712810 — biochemistry — Posted on 2019-09-19

1204 Subjective estimates of uncertainty during gambling and impulsivity after subthalamic deep brain stimulation for Parkinson’s disease

Paliwal, S.; Mosley, P.; Breakspear, M.; Coyne, T.; Silburn, P.; Aponte, E.; Mathys, C.; Stephan, K.

10.1101/477364 — neuroscience — Posted on 2019-09-19

1205 Precise timing is ubiquitous, consistent, and coordinated across a comprehensive, spike-resolved flight motor program

Putney, J.; Conn, R.; Sponberg, S.

10.1101/602961 — neuroscience — Posted on 2019-09-19

1206 The Positive End of the Polygenic Score Distribution for ADHD: A Low Risk or a Protective Factor?

Li, J. J.

10.1101/611897 — genomics — Posted on 2019-09-19

1207 PINK1-parkin-mediated mitophagy generates stereotyped somatic mosaicism of the mitochondrial genome

Ahier, A.; Cummins, N.; Dai, C.-Y.; Götz, J.; Zuryn, S.

10.1101/576165 — cell biology — Posted on 2019-09-19

1208 Network-based instantaneous recording and video-rate reconstruction of 4D biological dynamics

Wang, Z.; Zhang, H.; Zhu, L.; Li, G.; Li, Y.; Yang, Y.; Roustaei, M.; Gao, S.; Hsiai, T. K.; Fei, P.

10.1101/432807 — biophysics — Posted on 2019-09-19

1209 Fly-QMA: Automated analysis of mosaic imaginal discs in Drosophila

Bernasek, S. M.; Pelaez, N.; Carthew, R.; Bagheri, N.; Amaral, L.

10.1101/775783 — systems biology — Posted on 2019-09-19

1210 Influencing factors of telephone-cardiopulmonary resuscitation in China: a qualitative exploration based on managerial perspectives

Zhu, X.; Gui, L.; Xie, X.; Lin, Y.

10.1101/775874 — systems biology — Posted on 2019-09-19

1211 Chagas disease awareness and socioeconomic characteristics of Bolivian immigrants living in Sao Paulo, Brazil.

Silva, R.; Wanderley, D.; Forsyth, C.; Leite, R.; Luna, E.; Junior, N. C.; Shikanai-Yasuda, M. A.; Cassio Silveira, Fernando Aith, Lia Silva, Noemia Carvalho, Celia Furucho,

10.1101/775742 — scientific communication and education — Posted on 2019-09-19

1212 Effect of integrated health system leading-managing-and-governing for results model on institutional delivery: Team-based quasi-experiment

Ambelie, Y. A.; Alene, G. D.; Gebrekiros, D. H.

10.1101/775858 — scientific communication and education — Posted on 2019-09-19

1213 Transcriptional changes suggest a major involvement of Gibberellins in Trifolium pratense regrowth after mowing

Herbert, D. B.; Gross, T.; Rupp, O.; Becker, A.

10.1101/775841 — plant biology — Posted on 2019-09-19

1214 Is Mycetoma a Vector-Borne Disease: The First Report on the Detection of Madurella mycetomatis in Ticks

Fahal, A.; RS, A.; SM, B.; AM, A.; Mohamed, A. H.; AH, F.

10.1101/775767 — microbiology — Posted on 2019-09-19

1215 A Neural Network Based Algorithm for Dynamically Adjusting Activity Targets to Sustain Exercise Engagement Among People Using Activity Trackers

Mohammadi, R.; Centi, A. J.; Atif, M.; Agboola, S.; Jethwani, K.; Kvedar, J. C.; Kamarthi, S.

10.1101/775908 — bioinformatics — Posted on 2019-09-19

1216 Blood pressure variability from intra-arterial recordings in humans

Subramani, S.; Mukadam, F. A.; Gangadharan, N.; Baskaran, B.; S, B.; Kandasamy, S.; Wankhar, S.; Devasahayam, S.

10.1101/775866 — physiology — Posted on 2019-09-19

1217 Relevance of screening for Chagas and viral hepatitis in Bolivian migrants

Losada Galvan, I.; Gariup, G.; Casellas, A.; Subira, C.; Almuedo-Riera, A.; Camprubi, D.; Rodriguez-Valero, N.; Gascon, J.; Munoz, J.; Pinazo, M. J.

10.1101/775890 — microbiology — Posted on 2019-09-19

1218 Distinctive tasks of different cyanobacteria and associated bacteria in carbon as well as nitrogen fixation and cycling in a late stage Baltic Sea bloom

Eigemann, F.; Vogts, A.; Voss, M.; Zoccarato, L.; Schulz-Vogt, H.

10.1101/775825 — ecology — Posted on 2019-09-19

1219 Structural and molecular insight into the pH-induced low-permeability of the voltage-gated potassium channel Kv1.2 through dewetting of the water cavity

Lee, J.; Kang, M.; Kim, S.; Chang, I.

10.1101/775759 — biophysics — Posted on 2019-09-19

1220 Modulation of longevity by diet, and youthful body weight, but not by weight gain after maturity

Roy, S.; Sleiman, M. B.; Jha, P.; Williams, E. G.; Ingels, J. F.; Chapman, C. J.; McCarty, M. S.; Hook, M.; Sun, A.; Neuner, S.; Huang, J.; Zhao, W.; Centeno, A. G.; Kaczorowski, C. C.; Mozhui, K.; Mulligan, M. K.; Lu, L.; Read, R. W.; Sen, S.; Miller, R.; Auwerx, J.; Williams, R. W.

10.1101/776559 — genetics — Posted on 2019-09-19

1221 Robust effects of cortical feedback on thalamic firing mode during naturalistic stimulation

Spacek, M. A.; Born, G.; Crombie, D.; Katzner, S. A.; Busse, L.

10.1101/776237 — neuroscience — Posted on 2019-09-19

1222 Reduced frontal white matter microstructure in healthy older adults with low tactile recognition performance

Higgen, F. L.; Braass, H.; Schulz, R.; Xue, G.; Gerloff, C.

10.1101/775502 — neuroscience — Posted on 2019-09-19

1223 Compartmentalization of intestinal bacteria by hepatic ILC3s prevents infections after surgery

Jakob, M. O.; Sanchez-Taltavull, D.; Yilmaz, B.; Malinka, T.; Mooser, C.; Spari, D.; Salm, L. A.; Freiburghaus, K.; Pereyra, D.; Hapfelmeier, S.; Masoodi, M.; Starlinger, P.; Stroka, D.; Tschan, F.; Candinas, D.; Gomez de Aguero, M.; Beldi, G.

10.1101/773150 — immunology — Posted on 2019-09-19

1224 Integrated Low-Energy and Low Carbon Shortcut Nitrogen removal with Biological Phosphorus Removal for Sustainable Mainstream Wastewater Treatment

Roots, P.; Sabba, F.; Rosenthal, A.; Wang, Y.; Yuan, Q.; Rieger, L.; Yang, F.; Kozak, J.; Zhang, H.; Wells, G.

10.1101/772004 — bioengineering — Posted on 2019-09-19

1225 Fibroblast-specific genome-scale modelling predicts an imbalance in amino acid metabolism in Refsum disease

Wegrzyn, A. B.; Herzog, K.; Gerding, A.; Kwiatkowski, M.; Wolters, J. C.; Dolga, A. M.; van Lint, A. E. M.; Wanders, R. J. A.; Waterham, H. R.; Bakker, B. M.

10.1101/776575 — systems biology — Posted on 2019-09-19

1226 Mutations in the SPTLC1 gene are a cause of amyotrophic lateral sclerosis that may be amenable to serine supplementation

Johnson, J. O.; Chia, R.; Kumaran, R.; Alahmady, N.; Miller, D. E.; Abramzon, Y.; Faghri, F.; Renton, A. E.; Topp, S. D.; Pliner, H. A.; Gibbs, J. R.; Ding, J.; Smith, N.; Landeck, N.; Nalls, M. A.; Cookson, M. R.; Pletnikova, O.; Troncoso, J.; Scholz, S. W.; Sabir, M. S.; Ahmed, S.; Dalgard, C. L.; Troakes, C.; Jones, A. R.; Shatunov, A.; Iacoangeli, A.; Al Khleifat, A.; Ticozzi, N.; Silani, V.; Gellera, C.; Blair, I. P.; Dobson-Stone, C.; Kwok, J. B.; England, B. K.; Bonkowski, E. S.; The International ALS Genomics Consortium, ; The ITALSGEN Consortium, ; The FALS Sequencing Consortium, ;

10.1101/770339 — genetics — Posted on 2019-09-19

1227 Evolution rapidly optimizes stability and aggregation in lattice proteins despite pervasive landscape valleys and mazes

Bertram, J.; Masel, J.

10.1101/776450 — evolutionary biology — Posted on 2019-09-19

1228 IL-1-conferred gene expression pattern in ERα+ BCa and AR+ PCa cells is intrinsic to ERα- BCa and AR- PCa cells and promotes cell survival

Nawas, A.; Kanchwala, M.; Thomas-Jardin, S.; Dahl, H.; Daescu, K.; Bautista, M.; Anunobi, V.; Wong, A.; Meade, R.; Mistry, R.; Ghatwai, N.; Bayerl, F.; Xing, C.; Delk, N.

10.1101/773978 — cancer biology — Posted on 2019-09-19

1229 KAKU4-mediated deformation of the vegetative nucleus controls its precedent migration over sperm cells in pollen tubes

Goto, C.; Tamura, K.; Nishimaki, S.; Yanagisawa, N.; Matsuura-Tokita, K.; Higashiyama, T.; Maruyama, D.; Hara-Nishimura, I.

10.1101/774489 — plant biology — Posted on 2019-09-19

1230 Exercise conditioned plasma dampens inflammation via clusterin and boosts memory

De Miguel, Z.; Betley, M. J.; Willoughby, D.; Lehallier, B.; Olsson, N.; Bonanno, L.; Fairchild, K. J.; Contrepois, K.; Elias, J. E.; Rando, T.; Wyss-Coray, T.

10.1101/775288 — neuroscience — Posted on 2019-09-19

1231 Feedback adaptation to unpredictable force fields in 250ms

Crevecoeur, F.; Mathew, J.; Bastin, M.; Lefevre, P.

10.1101/773002 — neuroscience — Posted on 2019-09-19

1232 Forging new antibiotic combinations under iron-limiting conditions

Chan, D. C. K.; Guo, I.; Burrows, L. L.

10.1101/775445 — microbiology — Posted on 2019-09-19

1233 Machine Learning Analysis of Motor Evoked Potential Time Series to Predict Disability Progression in Multiple Sclerosis

Yperman, J.; Becker, T.; Valkenborg, D.; Popescu, V.; Hellings, N.; Van Wijmeersch, B.; Peeters, L.

10.1101/772996 — immunology — Posted on 2019-09-19

1234 In situ dissection of domain boundaries affect genome topology and gene transcription in Drosophila

Arzate-Mejia, R. G.; Cerecedo-Castillo, A. J.; Guerrero, G.; Furlan-Magaril, M.; Recillas-Targa, F.

10.1101/776542 — genomics — Posted on 2019-09-19

1235 Genetic changes of P. vivax tempers host tissue-specific responses in Anopheles stephensi

Tevatiya, S.; Kumari, S.; Chauhan, C.; Singla, D.; De, T. D.; Sharma, P.; Thomas, T.; Rani, J.; Pandey, K.; Pande, V.; Dixit, R.

10.1101/774166 — genomics — Posted on 2019-09-19

1236 Differential effects of farming practice on cuckoo bumblebee communities in relation to their hosts

Howard, C. E.; Gilbert, J. D.; Austin, A. J.

10.1101/774406 — ecology — Posted on 2019-09-19

1237 Inhibition of the Myocardin-Related Transcription Factor pathway increases efficacy of Trametinib in NRAS-mutant melanoma cell lines

Appleton, K. M.; Palsuledesai, C. C.; Misek, S. A.; Blake, M.; Zagorski, J.; Dexheimer, T. S.; Neubig, R. R.

10.1101/773531 — cancer biology — Posted on 2019-09-19

1238 UMI-VarCal: a new UMI-based variant caller that efficiently improves low-frequency variant detection in paired-end sequencing NGS libraries

Sater, V.; Viailly, P.-J.; Lecroq, T.; Prieur-Gaston, E.; Bohers, E.; Viennot, M.; Ruminy, P.; Dauchel, H.; Vera, P.; Jardin, F.

10.1101/775817 — bioinformatics — Posted on 2019-09-19

1239 RobNorm: Model-Based Robust Normalization for High-Throughput Proteomics from Mass Spectrometry Platform

Wang, M.; Jiang, L.; Jian, R.; Chan, J.; Snyder, M. P.; Tang, H.

10.1101/770115 — bioinformatics — Posted on 2019-09-19

1240 Network effects of the neuropsychiatric 15q13.3 microdeletion on the transcriptome and epigenome in human induced neurons

Zhang, S.; Zhang, X.; Ma, S.; Purmann, C.; Davis, K.; Wong, W. H.; Bernstein, J.; Hallmayer, J.; Urban, A. E.

10.1101/772541 — genetics — Posted on 2019-09-19

1241 Middle-down proteomics reveals dense sites of methylation and phosphorylation in arginine-rich RNA-binding proteins

Kundinger, S. R.; Bishof, I.; Dammer, E. B.; Duong, D. M.; Seyfried, N. T.

10.1101/775122 — biochemistry — Posted on 2019-09-19

1242 Free fatty acid receptor 4 is a nutrient sensor that resolves inflammation to maintain cardiac homeostasis

10.1101/776294 — physiology — Posted on 2019-09-19

1243 Life out of water: Genomic and physiological mechanisms underlying skin phenotypic plasticity

Dong, Y.-w.; Blanchard, T. S.; Noll, A.; Vasquez, P.; Schmitz, J.; Kelly, S. P.; Wright, P. A.; Whitehead, A.

10.1101/772319 — physiology — Posted on 2019-09-19

1244 A Subcutaneous Implant of Tenofovir Alafenamide Fumarate Causes Local Inflammation and Tissue Necrosis in Rabbits and Macaques

Su, J.; Simpson, S. M.; Sung, S.; Bryndza-Tfaily, E.; Veazey, R. S.; Marzinke, M. A.; Qiu, J.; Watrous, D.; Widanapathirana, L.; Pearson, E.; Peet, M. M.; Karunakaran, D.; Grasperge, B.; Dobek, G.; Cain, C. M.; Hope, T. J.; Kiser, P. F.

10.1101/775452 — pharmacology and toxicology — Posted on 2019-09-19

1245 Superior temporal sulcus hypoperfusion in children with autism spectrum disorder: an arterial spin-labeling magnetic resonance study

Saitovitch, A.; Rechtman, E.; Lemaitre, H.; Tacchella, J.-M.; Vincon-Leite, A.; Douard, E.; Calmon, R.; Grevent, D.; Philippe, A.; Chabane, N.; Brunelle, F.; Boddaert, N.; Zilbovicius, M.

10.1101/771584 — neuroscience — Posted on 2019-09-19

1246 Multiple testing correction over contrasts for brain imaging

Visineski Alberton, B. A.; Nichols, T. E.; Gamba, H. R.; Winkler, A. M.

10.1101/775106 — neuroscience — Posted on 2019-09-19

1247 Free Energy Principle in Human Postural Control System: Skin Stretch Feedback Reduces the Entropy

Hur, P.; Pan, Y.-T.; DeBuys, C.

10.1101/774026 — neuroscience — Posted on 2019-09-19

1248 Disentangling sound from syntax: electrophysiological analysis of linguistics expressions

Artoni, F.; D'Orio, P.; Catricala, E.; Conca, F.; Bottoni, F.; Pelliccia, V.; Sartori, I.; Lo Russo, G.; Cappa, S. F.; Micera, S.; Moro, A.

10.1101/774257 — neuroscience — Posted on 2019-09-19

1249 Adaptive Tuning Curve Widths Improve Sample Efficient Learning

Meier, F.; Dang-Nhu, R.; Steger, A.

10.1101/775163 — neuroscience — Posted on 2019-09-19

1250 Coordination of transcriptional and translational regulations in human cells infected by Listeria monocytogenes

Besic, V.; Habibolahi, F.; Noël, B.; Rupp, S.; Genovesio, A.; Lebreton, A.

10.1101/775148 — molecular biology — Posted on 2019-09-19

1251 A unified sequence catalogue of over 280,000 genomes obtained from the human gut microbiome

Almeida, A.; Nayfach, S.; Boland, M.; Strozzi, F.; Beracochea, M.; Shi, Z. J.; Pollard, K. S.; Parks, D. H.; Hugenholtz, P.; Segata, N.; Kyrpides, N. C.; Finn, R. D.

10.1101/762682 — microbiology — Posted on 2019-09-19

1252 Effect of osmoprotectants on the survival of bacterial endophytes in lyophilized beet roots

Szymanska, S.; Sikora, M.; Hrynkiewicz, K.; Tyburski, J.; Tretyn, A.; Golebiewski, M.

10.1101/772939 — microbiology — Posted on 2019-09-19

1253 Distinct features of human myeloid cell cytokine response profiles identify neutrophil activation by cytokines as a prognostic feature during tuberculosis and cancer

Devlin, J. C.; Zwack, E. E.; Tang, M. S.; Li, Z.; Fenyo, D.; Torres, V. J.; Ruggles, K. V.; Loke, P.

10.1101/775296 — immunology — Posted on 2019-09-19

1254 Conditional gene expression reveals stage-specific functions of the unfolded protein response in the Ustilago maydis/maize pathosystem

Schmitz, L.; Kronstad, J. W.; Heimel, K.

10.1101/775692 — genetics — Posted on 2019-09-19

1255 GSDMA drives the most replicated association with asthma in naïve CD4+ T cells

Madore, A.-M.; Pain, L.; Boucher-Lafleur, A.-M.; Meloche, J.; Morin, A.; Simon, M.-M.; Ge, B.; Kwan, T.; Cheung, W. A.; Pastinen, T.; Laprise, C.

10.1101/774760 — genetics — Posted on 2019-09-19

1256 5’ tRNA halves are highly expressed in the primate hippocampus and sequence-specifically regulate gene expression

Jehn, J.; Treml, J.; Wulsch, S.; Ottum, B.; Erb, V.; Hewel, C.; Kooijmans, R. N.; Wester, L.; Fast, I.; Rosenkranz, D.

10.1101/774380 — molecular biology — Posted on 2019-09-19

1257 Probing glioblastoma and its microenvironment using single-nucleus and single-cell sequencing

Peng, S.; Rath, S.; Vuong, C.; Bollam, S.; Eschbacher, J.; Dong, X.; Mehta, S.; Sanai, N.; Berens, M.; Kim, S.; Dhruv, H.

10.1101/775197 — genomics — Posted on 2019-09-19

1258 Light-Activated Nanoscale Gas Vesicles Selectively Kill Tumor Cells

Gariepy, J.; Fernando, A.

10.1101/771881 — cancer biology — Posted on 2019-09-19

1259 System-Level Quantification and Phenotyping of Early Embryonic Morphogenesis of Caenorhabditis elegans

Guan, G.; Wong, M.-K.; Ho, V. W. S.; An, X.; Chan, L.-Y.; Tian, B.; Li, Z.; Tang, L.; Zhao, Z.; Tang, C.

10.1101/776062 — systems biology — Posted on 2019-09-19

1260 Imaging plant germline differentiation within Arabidopsis flower by light sheet microscopy

Valuchova, S.; Mikulkova, P.; Pecinkova, J.; Klimova, J.; Krumnikl, M.; Bainar, P.; Heckmann, S.; Tomancak, P.; Riha, K.

10.1101/774299 — plant biology — Posted on 2019-09-19

1261 Inter- and intraspecific differences in Drosophila cold tolerance are linked to hindgut reabsorption capacity

Andersen, M. K.; Overgaard, J.

10.1101/774653 — physiology — Posted on 2019-09-19

1262 Spatiotemporal input reorganization and enhancement of input-output gain sharpen cortical direction selectivity during development

Roy, A.; Osik, J. J.; Meschede-Krasa, B.; Alford, W.; Van Hooser, S. D.

10.1101/776534 — neuroscience — Posted on 2019-09-19

1263 State Space Methods for Phase Amplitude Coupling Analysis

Soulat, H.; Stephen, E. P.; Beck, A. M.; Purdon, P. L.

10.1101/772145 — neuroscience — Posted on 2019-09-19

1264 Neuronal population dynamics during motor plan cancellation in non-human primates

Pani, P.; Giamundo, M.; Giarrocco, F.; Mione, V.; Brunamonti, E.; Mattia, M.; Ferraina, S.

10.1101/774307 — neuroscience — Posted on 2019-09-19

1265 Sema3A Facilitates a Retrograde Death Signal via CRMP4-Dynein Complex Formation in ALS Motor Axons

PERLSON, E.; Maimon, R.; Ankol, L.; Weissova, R.; Tank, E.; Gradus, T.; Opatowsky, Y.; Barmada, S.; Balastik, M.

10.1101/774737 — neuroscience — Posted on 2019-09-19

1266 Altered Relationship between Soluble TREM2 and Inflammatory Markers in Young Adults with Down Syndrome

Weber, G. E.; Koenig, K.; Khrestian, M.; Shao, Y.; Tuason, E. D.; Gramm, M.; Lal, D.; Leverenz, J. B.; Bekris, L. M.

10.1101/776583 — neuroscience — Posted on 2019-09-19

1267 Young children combine sensory cues with learned information in a statistically efficient manner: But task complexity matters

Bejjanki, V. R.; Randrup, E. R.; Aslin, R. N.

10.1101/776260 — neuroscience — Posted on 2019-09-19

1268 Neural Correlates of Task-related Refixation Behaviour

Meghanathan, R. N.; Leeuwen, C. v.; Giannini, M.; Nikolaev, A. R.

10.1101/773143 — neuroscience — Posted on 2019-09-19

1269 Loss of Piccolo function in rats induces Pontocerebellar Hypoplasia type 3-like phenotypes

Falck, J.; Bruns, C.; Hoffmann, S.; Straub, I.; Plautz, E.; Orlando, M.; Munawar, H.; Rivalan, M.; Winter, Y.; Izsvak, Z.; Schmitz, D.; Hamra, K.; Hallermann, S.; Garner, C.; Ackermann, F.

10.1101/774422 — neuroscience — Posted on 2019-09-19

1270 Optimal response to quorum-sensing signals varies in different host environments with different pathogen group size

Raymond, B.

10.1101/775478 — microbiology — Posted on 2019-09-19

1271 Surface association induces cytotoxic alkyl-quinolones in Pseudomonas aeruginosa

Vrla, G. D.; Esposito, M.; Zhang, C.; Kang, Y.; Seyedsayamdost, M. R.; Gitai, Z.

10.1101/773291 — microbiology — Posted on 2019-09-19

1272 Mast cells and γδ T cells are largely dispensable for adaptive immune responses after laser-mediated epicutaneous immunization

Joubert, I.; Kovacs, D.; Scheiblhofer, S.; Winter, P.; Korotchenko, E.; Strandt, H.; Weiss, R.

10.1101/774323 — immunology — Posted on 2019-09-19

1273 Nanopore sequencing of Giardia reveals widespread intra-isolate structural variation

Pollo, S. M. J.; Reiling, S.; Wit, J.; Workentine, M.; Guy, R.; Batoff, G. W.; Yee, J.; Dixon, B.; Wasmuth, J. D.

10.1101/343541 — genomics — Posted on 2019-09-19

1274 Evaluating the Probability of CRISPR-based Gene Drive Contaminating Another Species

Courtier-Orgogozo, V.; Danchin, A.; Gouyon, P.-H.; Boete, C.

10.1101/776609 — genetics — Posted on 2019-09-19

1275 Metapopulation ecology links antibiotic resistance, consumption and patient transfers in a network of hospital wards

Shapiro, J. T.; Leboucher, G.; Myard-Dury, A.-F.; Girardo, P.; Luzzati, A.; Mary, M.; Sauzon, J.-F.; Lafay, B.; Dauwalder, O.; Laurent, F.; Lina, G.; Chidiac, C.; Couray-Targe, S.; Vandenesch, F.; Flandrois, J.-P.; Rasigade, J.-P.

10.1101/771790 — ecology — Posted on 2019-09-19

1276 Direct detection of molecular intermediates from first-passage times

Thorneywork, A. L.; Gladrow, J.; Qing, Y.; Rico-Pasto, M.; Ritort, F.; Bayley, H.; Kolomeisky, A. B.; Keyser, U. F.

10.1101/772830 — biophysics — Posted on 2019-09-19

1277 Allosteric Motions of the CRISPR-Cas9 HNH Nuclease Probed by NMR and Molecular Dynamics

East, K. W.; Newton, J. C.; Morzan, U. N.; Acharya, A.; Skeens, E.; Jogl, G.; Batista, V. S.; Palermo, G.; Lisi, G. P.

10.1101/660613 — biophysics — Posted on 2019-09-19

1278 A post-processing algorithm for building longitudinal medication dose data from extracted medication information using natural language processing from electronic health records

McNeer, E.; Beck, C.; Weeks, H. L.; Williams, M. L.; Choi, L.

10.1101/775015 — bioinformatics — Posted on 2019-09-19

1279 Global ocean resistome revealed: exploring Antibiotic Resistance Genes (ARGs) abundance and distribution on TARA oceans samples through machine learning tools

Cuadrat, R. R. d. C.; Sorokina, M.; Andrade, B. G.; Davila, A. M. R.

10.1101/765446 — bioinformatics — Posted on 2019-09-19

1280 End-to-End Boundary Aware Networks for Medical Image Segmentation

Hatamizadeh, A.; Terzopoulos, D.; Myronenko, A.

10.1101/770248 — bioengineering — Posted on 2019-09-19

1281 Voluntary movement initiation is not coupled to optimal sensorimotor oscillatory phases

Hussain, S. J.; Vollmer, M. K.; Quentin, R.; Iturrate, I.; Cohen, L.

10.1101/776393 — neuroscience — Posted on 2019-09-19

1282 Information-based taste maps in insular cortex are shaped by stimulus concentration

Porcu, E.; Benz, K. M.; Ball, F.; Tempelmann, C.; Hanke, M.; Noesselt, T.

10.1101/774687 — neuroscience — Posted on 2019-09-19

1283 Fluctuations in the homeostatic neural circuitry influence consistency in choices between cultural goods

Azzalini, D.; Buot, A.; Palminteri, S.; Tallon-Baudry, C.

10.1101/776047 — neuroscience — Posted on 2019-09-19

1284 Identification of a female determinant gene for the sexual determination of a hemipteran insect, the brown planthopper

Zhuo, J.-C.; Zhang, H.-H.; Xie, Y.-C.; Li, H.-J.; Hu, Q.-L.; Zhang, C.-X.

10.1101/775577 — molecular biology — Posted on 2019-09-19

1285 A histone methyltransferase inhibitor can reverse epigenetically acquired drug resistance in the malaria parasite Plasmodium falciparum

Chan, A.; Dziedziech, A.; Kirkman, L.; Deitsch, K.; Ankarklev, J.

10.1101/775734 — microbiology — Posted on 2019-09-19

1286 The proton pump inhibitor omeprazole does not promote Clostridium difficile colonization in a murine model

Tomkovich, S. T.; Lesniak, N. A.; Li, Y.; Bishop, L.; Fitzgerald, M. J.; Schloss, P. D.

10.1101/775411 — microbiology — Posted on 2019-09-19

1287 Cariogenic Streptococcus mutans produces strain-specific antibiotics that impair commensal colonization

Tang, X.; Kudo, Y.; Baker, J.; LaBonte, S.; Jordan, P.; McKinnie, S.; Guo, J.; Huan, T.; Moore, B.; Edlund, A.

10.1101/755025 — microbiology — Posted on 2019-09-19

1288 Establishment of Wolbachia strain wAlbB in Malaysian populations of Aedes aegypti for dengue control

Nazni, W. A.; Hoffmann, A. A.; Noor Afizah, A.; Mancini, M. V.; Golding, N.; Kamarul, M. R. G.; Arif, A. K. M.; Thohir, H.; Nur Syamimi, H. S.; Nur Zatil Aqmar, M. Z.; Nur Ruqqayah, M. M.; Siti Nor Syazwani, A.; Faiz, A.; Irfan, M. N. F. R.; Rubaaini, S.; Nuradila, N.; Nizam, M. M. N.; Mohamad Irwan, M. S.; Endersby-Harshman, N. M.; White, V. L.; Ant, T. H.; Herd, C.; Hasnor, H. A.; Abu Bakar, R.; Hapsah, M. D.; Khadijah, K.; Kamilan, D.; Lee, S. C.; Paid, M.; Fadzilah, K.; Gill, B. S.; Lee, H. L.; Sinkins, S. P.

10.1101/775965 — microbiology — Posted on 2019-09-19

1289 The genome of Caenorhabditis bovis

Stevens, L.; Rooke, S.; Falzon, L. C.; Machuka, E. M.; Momanyi, K.; Murungi, M. K.; Njoroge, S. M.; Odinga, C. O.; Ogendo, A.; Ogola, J.; Fevre, E. M.; Blaxter, M.

10.1101/766857 — genomics — Posted on 2019-09-19

1290 Disrupted gene networks in subfertile hybrid house mice

Morgan, K.; Harr, B.; White, M. A.; Payseur, B. A.; Turner, L. M.

10.1101/776286 — evolutionary biology — Posted on 2019-09-19

1291 STAT3-dependent systems-level analysis reveals PDK4 as an independent predictor of biochemical recurrence in prostate cancer

Oberhuber, M.; Pecoraro, M.; Rusz, M.; Oberhuber, G.; Wieselberg, M.; Haslinger, P.; Gurnhofer, E.; Pencik, J.; Wiebringhaus, R.; Schlederer, M.; Weiss, T.; Schmeidl, M.; Haitel, A.; Brehme, M. J.; Wadsak, W.; Griss, J.; Mohr, T.; Hofer, A.; Jäger, A.; Egger, G.; Pollheimer, J.; Koellensperger, G.; Mann, M.; Hantusch, B.; Kenner, L.

10.1101/770701 — cancer biology — Posted on 2019-09-19

1292 OTULIN prevents liver inflammation and hepatocellular carcinoma by inhibiting FADD- and RIPK1 kinase-mediated hepatocyte apoptosis

Verboom, L.; Martens, A.; Priem, D.; Hoste, E.; Sze, M.; Vikkula, H.; Voet, S.; Bongiovanni, L.; de Bruin, A.; Scott, C. L.; Pasparakis, M.; Bertrand, M. J.; van Loo, G.

10.1101/776088 — cancer biology — Posted on 2019-09-19

1293 Fabrication of sharp silicon arrays to wound Caenorhabditis elegans

Belougne, J.; Ozerov, I.; Caillard, C.; Bedu, F.; Ewbank, J. J.

10.1101/776302 — bioengineering — Posted on 2019-09-19

1294 The trajectory of gait development in mice

Akula, S.; McCullough, K. B.; Weichselbaum, C.; Dougherty, J. D.; Maloney, S. E.

10.1101/774885 — animal behavior and cognition — Posted on 2019-09-19

1295 Three-dimensional characterisation of osteocyte volumes at multiple scales, and its relationship with bone biology and genome evolution in ray-finned fishes

Davesne, D.; Schmitt, A. D.; Fernandez, V.; Benson, R. B. J.; Sanchez, S.

10.1101/774778 — zoology — Posted on 2019-09-19

1296 Dual UTR-A novel 5′ untranslated region design for synthetic biology applications

Le, S. B.; Onsager, I.; Lorentzen, J. A.; Lale, R.

10.1101/775643 — synthetic biology — Posted on 2019-09-19

1297 Delayed suppression normalizes face identity responses in the primate brain

Koyano, K. W.; Jones, A. P.; McMahon, D. B.; Waidmann, E. N.; Russ, B. E.; Leopold, D. A.

10.1101/773689 — neuroscience — Posted on 2019-09-19

1298 Chronic repression by MAF1 supports futile RNA cycling as a mechanism for obesity resistance

Bonhoure, N.; Praz, V.; Moir, R. D.; Willemin, G.; Mange, F.; Moret, C.; Willis, I. M.; Hernandez, N.

10.1101/775353 — molecular biology — Posted on 2019-09-19

1299 Flagella methylation promotes bacterial adhesion and host cell invasion

Horstmann, J. A.; Lunelli, M.; Cazzola, H.; Heidemann, J.; Kuehne, C.; Steffen, P.; Szefs, S.; Rossi, C.; Lokareddy, R. K.; Wang, C.; Hughes, K. T.; Uetrecht, C.; Schlueter, H.; Grassl, G. A.; Stradal, T. E.; Rossez, Y.; Kolbe, M.; Erhardt, M.

10.1101/774588 — microbiology — Posted on 2019-09-19

1300 An atlas of bacterial and viral associations in cancer

Borchmann, S.

10.1101/773200 — genomics — Posted on 2019-09-19

1301 GWAS and Fine-Mapping of Livability and Six Disease Traits in Holstein Cattle

Freebern, E.; Santos, D.; Fang, L.; Jiang, J.; Parker Gaddis, K.; Liu, G.; VanRaden, P.; Maltecca, C.; Cole, J.; Ma, L.

10.1101/775098 — genetics — Posted on 2019-09-19

1302 Evidence of polygenic adaptation at height-associated loci in mainland Europeans and Sardinians

Chen, M.; Sidore, C.; Akiyama, M.; Ishigaki, K.; Kamatani, Y.; Schlessinger, D.; Cucca, F.; Okada, Y.; Chiang, C. W. K.

10.1101/776377 — genetics — Posted on 2019-09-19

1303 nkx3.2 mutant zebrafish accommodate the jaw joint loss through a phenocopy of the head shapes of Paleozoic agnathans

Miyashita, T.; Baddam, P.; Smeeton, J.; Oel, A. P.; Natarajan, N.; Gordon, B.; Palmer, R.; Crump, G.; Graf, D.; Allison, W. T.

10.1101/776351 — evolutionary biology — Posted on 2019-09-19

1304 Blind spots in global soil biodiversity and ecosystem function research

Guerra, C. A.; SoilBON Consortium, ; Eisenhauer, N.

10.1101/774356 — ecology — Posted on 2019-09-19

1305 FANCY: Fast Estimation of Privacy Risk in Functional Genomics Data

Gursoy, G.; Navarro, F. C.; Gerstein, M.

10.1101/775338 — bioinformatics — Posted on 2019-09-19

1306 Drug-Target Interaction prediction using Multi-Graph Regularized Deep Matrix Factorization

Mongia, A.; Majumdar, A.

10.1101/774539 — bioinformatics — Posted on 2019-09-19

1307 Extended snake venomics by top-down in-source decay: Investigating the newly discovered Anatolian Meadow viper subspecies, Vipera anatolica senliki

Hempel, B.-F.; Damm, M.; Mrinalini, M.; Göcmen, B.; Karis, M.; Nalbantsoy, A.; Kini, R. M.; Süssmuth, R. D.

10.1101/773606 — biochemistry — Posted on 2019-09-19

1308 Programmed Cell Death in Developing Brachypodium distachyon Grain

Saada, S.; Solomon, C. U.; Drea, S.

10.1101/775833 — plant biology — Posted on 2019-09-19

1309 Neutrophil-mediated dynamic capillary stalls in ischemic penumbra: persistent traffic jams after reperfusion contribute to injury

Erdener, S. E.; Tang, J.; Kilic, K.; Postnov, D. D.; Giblin, J. T.; Kura, S.; Chen, I.-C. A.; Vayisoglu, T.; Sakadzic, S.; Schaffer, C. B.; Boas, D.

10.1101/776427 — neuroscience — Posted on 2019-09-19

1310 Evaluation of the anti-inflammatory effects of synthesised tanshinone I and isotanshinone I analogues in zebrafish

Foulkes, M. J.; Henry, K. M.; Renshaw, S. A.; Jones, S.

10.1101/773309 — immunology — Posted on 2019-09-19

1311 The power of mixed survey methodologies for detecting decline of the Bornean orangutan

Santika, T.; Wilson, K. A.; Meijaard, E.; Ancrenaz, M.

10.1101/775064 — ecology — Posted on 2019-09-19

1312 embarcadero: Species distribution modelling with Bayesian additive regression trees in R

Carlson, C. J.

10.1101/774604 — ecology — Posted on 2019-09-19

1313 BITACORA: A comprehensive tool for the identification and annotation of gene families in genome assemblies

Vizueta, J.; Sanchez-Gracia, A.; Rozas, J.

10.1101/593889 — bioinformatics — Posted on 2019-09-19

1314 Ongoing surveillance protects tanoak whilst conserving biodiversity: applying optimal control theory to a spatial simulation model of sudden oak death

Bussell, E. H.; Cunniffe, N. J.

10.1101/773424 — plant biology — Posted on 2019-09-19

1315 Learning with reward prediction errors in a model of the Drosophila mushroom body

Bennett, J. E.; Philippides, A.; Nowotny, T.

10.1101/776401 — neuroscience — Posted on 2019-09-19

1316 Selective loss of the GABAAα1 subunit from Purkinje cells is sufficient to induce a tremor phenotype

Nietz, A.; Krook-Magnuson, C.; Gutierrez, H.; Klein, J.; Sauve, C.; Krook-Magnuson, E.

10.1101/773655 — neuroscience — Posted on 2019-09-19

1317 Causal links between parietal alpha activity and spatial auditory attention

Deng, Y.; Reinhart, R. M. G.; Choi, I.; Shinn-Cunningham, B. G.

10.1101/775718 — neuroscience — Posted on 2019-09-19

1318 Cyb5r3 links FoxO1-dependent mitochondrial dysfunction with β-cell failure

Fan, J.; Du, W.; Kim-Muller, J.-Y.; Kuo, T.; Son, J.; Larrea, D.; Garcia, C. J.; Kitamoto, T.; Kraakman, M. J.; Owusu-Ansah, E.; Cirulli, V.; Accili, D.

10.1101/774364 — molecular biology — Posted on 2019-09-19

1319 Nuclear poly(A) tail size is regulated by Cnot1 during the serum response

Singhania, R.; Thorn, G. J.; Williams, K.; Gandhi, R. D.; Daher, C.; Barthet-Barateig, A.; Parker, H. N.; Utami, W.; Al-Siraj, M.; Barrett, D. A.; Wattis, J. A.; de Moor, C. H.

10.1101/773432 — molecular biology — Posted on 2019-09-19

1320 Diversity patterns of marine heterotrophic culturable bacteria along vertical and latitudinal gradients

Sanz-Saez, I.; Salazar, G.; Lara, E.; Royo-Llonch, M.; Vaque, D.; Duarte, C. M.; Gasol, J. M.; Pedro-Alio, C.; Sanchez, O.; Acinas, S. G.

10.1101/774992 — microbiology — Posted on 2019-09-19

1321 Three-dimensional label-free observation of individual bacteria upon antibiotic treatment using optical diffraction tomography

oh, j.; Ryu, J. S.; Lee, M.; Jung, J.-h.; Han, S.; Chung, H. J.; Park, Y.

10.1101/775346 — microbiology — Posted on 2019-09-19

1322 A unique mode of nucleic acid immunity performed by a single multifunctional enzyme

Bari, S. M. N.; Chou-Zheng, L.; Cater, K.; Dandu, V. S.; Thomas, A.; Aslan, B.; Hatoum-Aslan, A.

10.1101/776245 — microbiology — Posted on 2019-09-19

1323 Coexistence with Pseudomonas aeruginosa alters Staphylococcus aureus transcriptome, antibiotic resistance and internalization into epithelial cells

Briaud, P.; Camus, L.; Bastien, S.; Doleans-Jordheim, A.; Vandenesch, F.; Moreau, K.

10.1101/775684 — microbiology — Posted on 2019-09-19

1324 Spatio-temporal control of DNA replication by the pneumococcal cell cycle regulator CcrZ

Gallay, C.; Sanselicio, S.; Anderson, M. E.; Soh, Y. M.; Liu, X.; Stamsas, G. A.; Pelliciari, S.; van Raaphorst, R.; Kjos, M.; Murray, H.; Gruber, S.; Grossman, A. D.; Veening, J.-W.

10.1101/775536 — microbiology — Posted on 2019-09-19

1325 DJ-1 (Park7) affects the gut microbiome, metabolites, and development of Innate Lymphoid Cells (ILCs)

Singh, Y.; Trautwein, C.; Dhariwal, A.; Salker, M. S.; Alauddin, M.; Zizmare, L.; Pelzl, L.; Feger, M.; Matthes, J.; Casadei, N.; Föller, M.; Pachauri, V.; Park, D. S.; Mak, T. W.; Frick, J. S.; Wallweiner, D.; Brucker, S.; Lang, F.; Riess, O.

10.1101/776005 — immunology — Posted on 2019-09-19

1326 Club cell TRPV4 as a damage sensor driving lung allergic inflammation

Wiesner, D. L.; Merkhofer, R. M.; Ober, C. L.; Kujoth, G. C.; Gern, J. E.; Brockman Schneider, R.; Evans, M. D.; Jackson, D. J.; Warner, T. F.; Jarjour, N.; Esnault, S. J.; Feldman, M. B.; Freeman, M. J.; Mou, H.; Vyas, J.; Klein, B. S.

10.1101/773382 — immunology — Posted on 2019-09-19

1327 A multi-tissue transcriptome analysis of human metabolites guides the interpretability of associations based on multi-SNP models for gene expression

Ndungu, A.; Payne, A.; Torres, J. M.; van de Bunt, M.; McCarthy, M.

10.1101/773630 — genomics — Posted on 2019-09-19

1328 Virulence and antibiotic resistance plasticity of Arcobacter butzleri: insights on the genomic diversity of an emerging human pathogen

Isidro, J.; Ferreira, S.; Pinto, M.; Domingues, F.; Oleastro, M.; Gomes, J. P.; Borges, V.

10.1101/775932 — genomics — Posted on 2019-09-19

1329 Leveraging targeted sequencing for non-model species: a step-by-step guide to obtain a reduced SNP set and a pipeline to automate data processing in the Antarctic Midge, Belgica antarctica.

Pavinato, V. A. C.; Wijeratne, S.; Spacht, D.; Denlinger, D. L.; Meulia, T.; Michel, A. P.

10.1101/772384 — evolutionary biology — Posted on 2019-09-19

1330 A sex chromosome inversion is associated with copy number variation of mitochondrial DNA in zebra finch sperm

Knief, U.; Forstmeier, W.; Kempenaers, B.; Wolf, J. B. W.

10.1101/776054 — evolutionary biology — Posted on 2019-09-19

1331 Pathways of human development threaten biomes protection and their remaining natural vegetation

Rosa, I. M.; Guerra, C. A.

10.1101/776443 — ecology — Posted on 2019-09-19

1332 Native seed addition as an effective tool for post-invasive restoration

Bucharova, A.; Krahulec, F.

10.1101/774331 — ecology — Posted on 2019-09-19

1333 miRmedon: confident detection of microRNA editing

Mordechai, A.; Eran, A.

10.1101/774661 — bioinformatics — Posted on 2019-09-19

1334 DNetPRO: A network approach for low-dimensional signatures from high-throughput data

Curti, N.; Giampieri, E.; Levi, G.; Castellani, G.; Remondini, D.

10.1101/773622 — bioinformatics — Posted on 2019-09-19

1335 Detection and Classification of Cardiac Arrhythmias by a Challenge-Best Deep Learning Neural Network Model

Chen, T.-M.; Huang, C.-H.; Shih, E. S. C.; Hu, Y.-F.; Hwang, M.-J.

10.1101/766022 — bioinformatics — Posted on 2019-09-19

1336 An agent-based model of molecular aggregation at the cell membrane

Griffie, J.; Peters, R.; Owen, D.

10.1101/774505 — bioinformatics — Posted on 2019-09-19

1337 Gravity-based microfiltration reveals unexpected prevalence of circulating tumor cell clusters in ovarian cancer

Meunier, A.; Hernandez-Castro, J. A.; Kheireddine, S.; Al Habyan, S.; Peant, B.; Veres, T.; McCaffrey, L.; Provencher, D.; Mes-Masson, A.-M.; Juncker, D.

10.1101/773507 — bioengineering — Posted on 2019-09-19

1338 Testosterone secretion varies in a sex- and stage-specific manner: insights on the regulation of competitive traits from a sex-role reversed species

Lipshutz, S. E.; Rosvall, K. A.

10.1101/775262 — physiology — Posted on 2019-09-19

1339 Machine learning-assisted neurotoxicity prediction in human midbrain organoids

Monzel, A. S.; Hemmer, K.; Kaoma Mukendi, T.; Lucarelli, P.; Rosety, I.; Zagare, A.; Bolognin, S.; Antony, P.; Nickels, S. L.; Krueger, R.; Azuaje, F.; Schwamborn, J. C.

10.1101/774240 — pharmacology and toxicology — Posted on 2019-09-19

1340 Laminar-specific cortico-cortical loops in mouse visual cortex

Young, H.; Belbut, B.; Baeta, M.; Petreanu, L.

10.1101/773085 — neuroscience — Posted on 2019-09-19

1341 Differential modulation of ventral tegmental area circuits by the nociceptin/orphanin FQ system

Driscoll, J. R.; Wallace, T. L.; Martin, W. J.; Margolis, E. B.

10.1101/776484 — neuroscience — Posted on 2019-09-19

1342 Seeing β-arrestin in action: The role of β-arrestins in Histamine 1 Receptor signaling

Pietraszewska-Bogiel, A.; Goedhart, J.

10.1101/775049 — molecular biology — Posted on 2019-09-19

1343 Interactions of Plasmodium falciparum ETRAMP14.1 with PfEMP1, translocon components and other ETRAMP members at the interface of host-parasite

Surolia, N.; Sindhe, K. M. V.; Ray, A.; Kumar, S.

10.1101/775650 — molecular biology — Posted on 2019-09-19

1344 Definition of alleles and altered regulatory motifs across Cas9-edited cell populations

Ehmsen, K. T.; Knuesel, M. T.; Martinez, D.; Asahina, M.; Aridomi, H.; Yamamoto, K. R.

10.1101/775361 — molecular biology — Posted on 2019-09-19

1345 Steryl ester formation and accumulation in steroid-degrading bacteria

Holert, J.; Brown, K.; Hashimi, A.; Eltis, L. D.; Mohn, W. W.

10.1101/775916 — microbiology — Posted on 2019-09-19

1346 Mucoidy, a general mechanism for maintaining lytic phage in populations of bacteria

Levin, B. R. R.; Chaudhry, W. N.; Lee, E.; Worthy, A.; Weiss, Z.; Grabowicz, M.; Vega, N.

10.1101/775056 — microbiology — Posted on 2019-09-19

1347 Transglutaminase-2 of pancreatic cancer cells assembles a CXCL12-keratin 19-coat that mediates the resistance to immunotherapy

Wang, Z.; Li, J.; Gao, Y.; Janowitz, T.; Fearon, D.

10.1101/776419 — immunology — Posted on 2019-09-19

1348 Comparisons of the antibody repertoires of a humanized rodent and humans by high throughput sequencing

Joyce, C.; Burton, D. R.; Briney, B.

10.1101/776385 — immunology — Posted on 2019-09-19

1349 Simulation with RADinitio Improves RADseq Experimental Design and Sheds Light on Sources of Missing Data

Rivera-Colon, A. G.; Rochette, N.; Catchen, J. M.

10.1101/775239 — genomics — Posted on 2019-09-19

1350 Expert Curation of the Human and Mouse Olfactory Receptor Gene Repertoires Identifies Conserved Coding Regions Split Across Two Exons

Barnes, I. H.; Ibarra-Soria, X.; Fitzgerald, S.; Gonzalez, J. M.; Davidson, C.; Hardy, M. P.; Manthravadi, D.; Van Gerven, L.; Jorissen, M.; Zeng, Z.; Khan, M.; Mombaerts, P.; Harrow, J.; Logan, D. W.; Frankish, A.

10.1101/774612 — genomics — Posted on 2019-09-19

1351 Estimation of Mediation Effect for High-dimensional Omics Mediators with Application to the Framingham Heart Study

Yang, T.; Niu, J.; Chen, H.; Wei, P.

10.1101/774877 — genomics — Posted on 2019-09-19

1352 Are trade-offs between flexibility and efficiency in systematic conservation planning avoidable?

Drira, S.; Ben rais Lasram, F.; Hattab, T.; Shin, Y. J.; Ben Rejeb Jenhani, A.; Guilhaumon, F.

10.1101/775072 — ecology — Posted on 2019-09-19

1353 Environmental decomposition of cuticular hydrocarbons generates a volatile pheromone that guides insect social behavior

Hatano, E.; Wada-Katsumata, A.; Schal, C.

10.1101/773937 — ecology — Posted on 2019-09-19

1354 A multi-seasonal model of plant-nematode interactions and its use to identify optimal plant resistance deployment strategies

Nilusmas, S.; Mercat, M.; Perrot, T.; Djian-Caporalino, C.; Castagnone-Sereno, P.; Touzeau, S.; Calcagno, V.; Mailleret, L.

10.1101/774869 — ecology — Posted on 2019-09-19

1355 Mechanistic macroecology: exploring the drivers of latitudinal variation in terrestrial body size in a General Ecosystem Model

Harfoot, M. B. J.; Abraham, A.; Tittensor, D. P.; Costa, G. C.; Faurby, S.; Feldman, A.; Itescu, Y.; Meiri, S.; Morales-Castilla, I.; Oliveira, B. F.; Purves, D.

10.1101/775957 — ecology — Posted on 2019-09-19

1356 Relationship between early body condition, energetic reserves and fitness in an iteroparous insect

Zanchi, C.; Moret, Y.; Gillingham, M.

10.1101/774893 — ecology — Posted on 2019-09-19

1357 The effects of data adequacy and calibration size on the accuracy of presence-only species distribution models

Santika, T.; Hutchinson, M. F.; Wilson, K. A.

10.1101/775700 — ecology — Posted on 2019-09-19

1358 OTULIN protects the liver against cell death, inflammation, fibrosis, and cancer

Damgaard, R. B.; Jolin, H. E.; Allison, M. E.; Davies, S. E.; McKenzie, A. N.; Komander, D.

10.1101/776021 — cancer biology — Posted on 2019-09-19

1359 A post-processing algorithm for building longitudinal medication dose data from extracted medication information using natural language processing from electronic health records

McNeer, E.; Beck, C.; Weeks, H. L.; Williams, M. L.; Choi, L.

10.1101/775015 — bioinformatics — Posted on 2019-09-19

1360 Microbiome-Gut-Brain-Axis communication regulates metabolic switch in the mosquito Anopheles culicifacies

De, T. D.; Tevatiya, S.; Chauhan, C.; Kumari, S.; Singla, D.; Srivastava, V.; Rani, J.; Sharma, P.; Hasija, Y.; Pandey, K.; Dixit, R.

10.1101/774430 — animal behavior and cognition — Posted on 2019-09-19

1361 The trajectory of gait development in mice

Akula, S.; McCullough, K. B.; Weichselbaum, C.; Dougherty, J. D.; Maloney, S. E.

10.1101/774885 — animal behavior and cognition — Posted on 2019-09-19

1362 Differential equation based minimal model describing metabolic oscillations in Bacillus subtilis biofilms

Garde, R.; Ibrahim, B.; Kovacs, A. T.; Schuster, S.

10.1101/775593 — systems biology — Posted on 2019-09-19

1363 Crossmodal Pattern Discrimination in Humans and Robots: A Visuo-Tactile Case Study

Higgen, F. L.; Ruppel, P.; Goerner, M.; Kerzel, M.; Hendrich, N.; Feldheim, J.; Wermter, S.; Zhang, J.; Gerloff, C.

10.1101/775403 — neuroscience — Posted on 2019-09-19

1364 Identification of gut microbiome markers for schizophrenia delineates a potential role of Streptococcus

Zhu, F.; Ju, Y.; Wang, W.; Wang, Q.; Guo, R.; Ma, Q.; Sun, Q.; Fan, Y.; Xie, Y.; Yang, Z.; Jie, Z.; Zhao, B.; Xiao, L.; Tao, Z.; Yang, L.; Kristiansen, K.; Ma, X.; Jia, H.

10.1101/774265 — microbiology — Posted on 2019-09-19

1365 Efficient use of harvest data: An integrated population model for exploited animal populations

Gamelon, M.; Baubet, E.; Besnard, A.; Gaillard, J.-M.; Lebreton, J.-D.; Touzot, L.; Veylit, L.; Gimenez, O.

10.1101/776104 — ecology — Posted on 2019-09-19

1366 Mechano-responsiveness of fibrillar adhesions on stiffness-gradient gels

Barber-Perez, N.; Georgiadou, M.; Guzman, C.; Isomursu, A.; Hamidi, H.; Ivaska, J.

10.1101/775809 — cell biology — Posted on 2019-09-19

1367 DNA origami-based single-molecule force spectroscopy unravels the molecular basis of RNA Polymerase III pre-initiation complex stability

Kramm, K.; Schroeder, T.; Gouge, J.; Vera, A. M.; Heiss, F. B.; Liedl, T.; Engel, C.; Vannini, A.; Tinnefeld, P.; Grohmann, D.

10.1101/775528 — biophysics — Posted on 2019-09-19

1368 Minimally disruptive optical control of protein tyrosine phosphatase 1B

Hongdusit, A.; Zwart, P. H.; Sankaran, B.; Fox, J. M.

10.1101/776203 — biochemistry — Posted on 2019-09-19

1369 Single-cell atlas of major haematopoietic tissues sheds light on blood cell formation from embryonic endothelium

Shvartsman, M.; Pavlovich, P. V.; Oatley, M.; Ganter, K.; McKernan, R.; Prialgauskaite, R.; Adamov, A.; Chukreev, K.; Descostes, N.; Buness, A.; Cabezas Wallscheid, N.; Lancrin, C.

10.1101/774547 — developmental biology — Posted on 2019-09-19

1370 Coiled-coil registry shifts in the F684I mutant of Bicaudal result in cargo-independent dynein recruitment

Cui, H.; Trybus, K. M.; Ali, M. Y.; Goyal, P.; Aura, X. D.; Loh, J. Y.; Solmaz, S. R.

10.1101/776187 — biophysics — Posted on 2019-09-19

1371 How the dual PDZ domain from Postsynaptic density protein 95 clusters ion channels and receptors.

Rodzli, N. A.; Lockhart-Cairns, M. P.; Levy, C.; Chipperfield, J.; Bird, L.; Baldock, C.; Prince, S. M.

10.1101/775726 — biophysics — Posted on 2019-09-19

1372 Structural Basis of Protein Arginine Methyltransferase Activation by a Catalytically Dead Homolog (Prozyme)

Hashimoto, H.; Kafkova, L.; Raczkowski, A.; Jordan, K. D.; Read, L. K.; Debler, E. W.

10.1101/776112 — biochemistry — Posted on 2019-09-19

1373 Topoisomerases modulate the timing of meiotic DNA breakage and repair

Heldrich, J.; Sun, X.; Vale-Silva, L. A.; Markowitz, T. E.; Hochwagen, A.

10.1101/672337 — genomics — Posted on 2019-09-19

1374 Microbial phenotypic heterogeneity in response to a metabolic toxin: continuous, dynamically shifting distribution of formaldehyde tolerance in Methylobacterium extorquens populations

Lee, J. A.; Riazi, S.; Nemati, S.; Bazurto, J. V.; Vasdekis, A. E.; Ridenhour, B. J.; Remien, C. H.; Marx, C. J.

10.1101/529156 — microbiology — Posted on 2019-09-19

1375 Alpha oscillations in the human brain implement distractor suppression independent of target selection

Woestmann, M.; Alavash, M.; Obleser, J.

10.1101/721019 — neuroscience — Posted on 2019-09-19

1376 The interplay between molten globules and heme disassociation defines human hemoglobin disassembly

Samuel, P. P.; White, M. A.; Ou, W. C.; Case, D. A.; Phillips, G. N.; Olson, J. S.

10.1101/726216 — biophysics — Posted on 2019-09-19

1377 Flexible cobamide metabolism in Clostridioides (Clostridium) difficile 630 Δerm

Shelton, A. N.; Lyu, X.; Taga, M. E.

10.1101/772582 — microbiology — Posted on 2019-09-19

1378 Estimating northern fur seal pup production: A case study of batch mark abundance estimation

Johnson, D. S.; Towell, R.; Baker, J.

10.1101/772350 — ecology — Posted on 2019-09-19

1379 Intraspecific interactions in the annual legume Medicago minima are shaped by both genetic variation for competitive ability and reduced competition among kin.

Tomiolo, S.; Thomas, C.; Jespersen, M. K.; Damgaard, C. F.; Ehlers, B. K.

10.1101/695908 — ecology — Posted on 2019-09-19

1380 Computational discovery of hidden breaks in 28S rRNA across eukaryotes and consequences for RNA Integrity Numbers

Natsidis, P.; Schiffer, P. H.; Salvador-Martinez, I.; Telford, M. J.

10.1101/773226 — bioinformatics — Posted on 2019-09-19

1381 Not so dry after all - DRY mutants of the AT1A receptor and H1 receptor can induce G protein-dependent signaling

Pietraszewska-Bogiel, A.; Joosen, L.; Goedhart, J.

10.1101/773044 — molecular biology — Posted on 2019-09-19

1382 Interferon-stimulated genes in zebrafish and human define an ancient arsenal of antiviral immunity

Levraud, J.-P.; Jouneau, L.; Briolat, V.; Laghi, V.; Boudinot, P.

10.1101/693333 — immunology — Posted on 2019-09-19

1383 DolphinNext: A graphical user interface for creating, deploying and executing Nextflow pipelines

Yukselen, O.; Turkyilmaz, O.; Ozturk, A.; Garber, M.; Kucukural, A.

10.1101/689539 — bioinformatics — Posted on 2019-09-19

1384 Low acetylcholine during early sleep is important for motor memory consolidation

Inayat, S.; Qandeel, Q.; Nazariahangarkolaee, M.; Singh, S.; McNaughton, B. L.; Whishaw, I. Q.; Mohajerani, M. H.

10.1101/494351 — neuroscience — Posted on 2019-09-19

1385 Abundance and diversity of resistomes differ between healthy human oral cavities and gut

Carr, V. R.; Witherden, E.; Lee, S.; Shoaie, S.; Mullany, P.; Proctor, G. B.; Gomez-Cabrero, D.; Moyes, D. L.

10.1101/644922 — microbiology — Posted on 2019-09-19

1386 Impaired alanine transport or exposure to D-cycloserine increases the susceptibility of MRSA to beta-lactam antibiotics

Gallagher, L.; Shears, R. K.; Fingleton, C.; Alvarez, L.; Waters, E.; Clarke, J.; Bricio-Moreno, L.; Campbell, C.; Yadav, A.; Razvi, F.; O'Neill, E.; O'Neill, A.; Cava, F.; Fey, P.; Kadioglu, A.; O'Gara, J. P.

10.1101/616920 — microbiology — Posted on 2019-09-19

1387 Multi-scale predictions of drug resistance epidemiology suggest a new design principle for rational drug design.

Leighow, S.; Liu, C.; Inam, H.; Zhao, B.; Pritchard, J. R.

10.1101/557645 — evolutionary biology — Posted on 2019-09-19

1388 Reproducibility test of radiomics using network analysis and Wasserstein K-means algorithm

Oh, J. H.; Apte, A.; Katsoulakis, E.; Riaz, N.; Hatzoglou, V.; Yu, Y.; Leeman, J.; Mahmood, U.; Pouryahya, M.; Iyer, A.; Shukla-Dave, A.; Tannenbaum, A.; Lee, N.; Deasy, J.

10.1101/773168 — biophysics — Posted on 2019-09-19

1389 High-Speed Automatic Characterization of Rare Events in Flow Cytometric Data

Qi, Y.; Fang, Y.; Sinclair, D. R.; Guo, S.; Alberich-Jorda, M.; Lu, J.; Tenen, D. G.; Kharas, M. G.; Pyne, S.

10.1101/591644 — bioinformatics — Posted on 2019-09-19

1390 Mesoamerica is a cradle and the Brazilian Atlantic Forest is a museum of Neotropical butterfly diversity (Lepidoptera: Nymphalidae: Brassolini)

Matos-Maravi, P.; Wahlberg, N.; Freitas, A. V. L.; DeVries, P. J.; Antonelli, A.; Penz, C.

10.1101/762393 — evolutionary biology — Posted on 2019-09-19

1391 Fertility of Pedicellate Spikelets in Sorghum is Controlled by a Jasmonic Acid Regulatory Module

Gladman, N. P.; Jiao, Y.; Lee, Y. K.; Zhang, L.; Chopra, R.; Regulski, M.; Burow, G.; Hayes, C.; Christensen, S. A.; Dampanaboina, L.; Chen, J.; Burke, J.; Ware, D.; Xin, Z.

10.1101/773564 — plant biology — Posted on 2019-09-19

1392 Invasion implies substitution in ecological communities with class-structured populations

Priklopil, T.; Lehmann, L.

10.1101/773580 — evolutionary biology — Posted on 2019-09-19

1393 Convergent evolution and structural adaptation in the eukaryotic chaperonin CCTα of deep-sea brittle stars

Weber, A. A.-T.; Hugall, A. F.; O'Hara, T. D.

10.1101/775585 — evolutionary biology — Posted on 2019-09-19

1394 Autoencoder-based cluster ensembles for single-cell RNA-seq data analysis

Geddes, T. A.; Kim, T.; Nan, L.; Burchfield, J. G.; Yang, J. Y. H.; Tao, D.; Yang, P.

10.1101/773903 — bioinformatics — Posted on 2019-09-19

1395 Library of model implementations for sharing deep-learning image segmentation and outcomes models

Apte, A. P.; Iyer, A.; Thor, M.; Pandya, R.; Haq, R.; Shukla-Dave, A.; Hu, Y.-C.; Elguindi, S.; Veeraraghavan, H.; Oh, J. H.; Jackson, A.; Deasy, J. O.

10.1101/773929 — bioinformatics — Posted on 2019-09-19

1396 Genome Sequencing and Transcriptome Analysis Reveal Recent Species-specific Gene Duplications in the Plastic Gilthead Sea Bream

Perez-Sanchez, J.; Naya-Catala, F.; Soriano, B.; Piazzon, M. C.; Hafez, A.; Gabaldon, T.; Llorens, C.; Sitja-Bobadilla, A.; Calduch-Giner, J.

10.1101/769240 — genomics — Posted on 2019-09-19

1397 A tale of winglets: evolution of flight morphology in stick insects

Zeng, Y.; O'Maley, C.; Singhal, S.; Rahim, F.; Park, S.; Chen, X.; Dudley, R.

10.1101/774067 — evolutionary biology — Posted on 2019-09-19

1398 Identification of Chikungunya virus nucleocapsid core assembly modulators

Jones-Burrage, S. E.; Tan, Z.; Li, L.; Zlotnick, A.; Mukhopadhyay, S.

10.1101/774943 — microbiology — Posted on 2019-09-19

1399 Cas9-mediated gene-editing in the malaria mosquito Anopheles stephensi by ReMOT Control

Macias, V. M.; McKeand, S.; Chaverra-Rodriguez, D.; Hughes, G. L.; Fazekas, A.; Pujhari, S.; Jasinskiene, N.; James, A. A.; Rasgon, J. L.

10.1101/775312 — genetics — Posted on 2019-09-19

1400 Astrovirus in Reunion Free-tailed Bat (Mormopterus francoismoutoui)

Joffrin, L.; Hoarau, A. O. G.; Lagadec, E.; Mavingui, P.; Lebarbenchon, C.

10.1101/774224 — ecology — Posted on 2019-09-19

1401 Mutation distribution density in tumors reconstructs human’s lost diversity

Heredia-Genestar, J. M.; Marques-Bonet, T.; Juan, D.; Navarro, A.

10.1101/773317 — cancer biology — Posted on 2019-09-19

1402 RELA is Sufficient to Mediate Interleukin-1 (IL-1) Repression of Androgen Receptor Expression and Activity in LNCaP Disease Progression Model

Thomas-Jardin, S.; Dahl, H.; Kanchwala, M.; Ha, F.; Jacob, J.; Soundharrajan, R.; Bautista, M.; Nawas, A.; Robichaux, D.; Mistry, R.; Anunobi, V.; Xing, C.; Delk, N.

10.1101/775320 — cancer biology — Posted on 2019-09-19

1403 Neural precursors of deliberate and arbitrary decisions in the study of voluntary action

Maoz, U.; Yaffe, G.; Koch, C.; Mudrik, L.

10.1101/097626 — neuroscience — Posted on 2019-09-19

1404 PrimPol-dependent single-stranded gap formation mediates homologous recombination at bulky DNA adducts

Piberger, A. L.; Walker, A. K.; Morris, J. R.; Bryant, H. E.; Petermann, E.

10.1101/773242 — molecular biology — Posted on 2019-09-19

1405 The Sle1 Cell Wall Amidase Controls Daughter Cell Splitting, Cell Size, and β-Lactam Resistance in Community Acquired Methicillin Resistant Staphylococcus aureus USA300

Thalso-Madsen, I.; Torrubia, F. R.; Xu, L.; Petersen, A.; Jensen, C.; Frees, D.

10.1101/772616 — microbiology — Posted on 2019-09-19

1406 Flexible cobamide metabolism in Clostridioides (Clostridium) difficile 630 Δerm

Shelton, A. N.; Lyu, X.; Taga, M. E.

10.1101/772582 — microbiology — Posted on 2019-09-19

1407 Polyunsaturated fatty acid analogues differentially affect cardiac Nav, Cav, and Kv channels through unique mechanisms

Bohannon, B.; Wu, X.; Perez, M.; Liin, S. I.; Larsson, H. P.

10.1101/772640 — biophysics — Posted on 2019-09-19

1408 Little Evidence for Associations Between the Big Five Personality Traits and Variability in Brain Gray or White Matter

Avinun, R.; Israel, S.; Knodt, A. R.; Hariri, A. R.

10.1101/658567 — neuroscience — Posted on 2019-09-19

1409 Generation of highly diverse peptide library by linear-double-stranded DNA based AND gate genetic circuit in mammalian cells

Li, S.; Su, W.; Zhang, C.

10.1101/392498 — bioengineering — Posted on 2019-09-19

1410 Controlled Self-Assembly of {lambda}-DNA Networks with the Synergistic Effect of DC Electric Field

Gao, M.; Hu, J.; Wang, Y.; Liu, M.; Wang, J.; Song, Z.; Xu, H.; Hu, C.; Wang, Z.

10.1101/774901 — biophysics — Posted on 2019-09-19

1411 Structural basis for two-way communication between dynein and microtubules

Nishida, N.; Komori, Y.; Takarada, O.; Watanabe, A.; Tamura, S.; Kubo, S.; Shimada, I.; Kikkawa, M.

10.1101/774414 — biophysics — Posted on 2019-09-18

1412 Loss of Nance-Horan Syndrome b (nhsb) prevents expansion growth of retinal progenitor cells by selective up-regulation of Δ113p53

Vorster, P. J.; Ojumu, J.; Dickinson, A. J. G.; Walsh, G. S.

10.1101/775171 — developmental biology — Posted on 2019-09-18

1413 Checkpoint regulation of nuclear Tos4 defines S phase arrest in fission yeast

Kim, S. M.; Tripathi, V. P.; Shen, K.-F.; Forsburg, S. L.

10.1101/775130 — cell biology — Posted on 2019-09-18

1414 ER stress sensor Ire1 deploys a divergent transcriptional program in response to lipid bilayer stress

Ho, N.; Wu, H.; Xu, J.; Koh, J. H.; Yap, W. S.; Goh, W. W. B.; Chong, S. C.; Taubert, S.; Thibault, G.

10.1101/774133 — cell biology — Posted on 2019-09-18

1415 High speed multi-plane super-resolution structured illumination microscopy of living cells using an image-splitting prism

Descloux, A.; Müller, M.; Navikas, V.; Markwirth, A.; Van den Eynde, R.; Lukes, T.; Hübner, W.; Lasser, T.; Radenovic, A.; Dedecker, P.; Huser, T.

10.1101/773440 — biophysics — Posted on 2019-09-18

1416 Increasing demand for plasma membrane contributes to the energetic cost of early zebrafish embryogenesis.

Rodenfels, J.; Sartori, P.; Golfier, S.; Nagendra, K.; Neugebauer, K.; Howard, J.

10.1101/775114 — developmental biology — Posted on 2019-09-18

1417 Exposure to the RXR agonist SR11237 in early life causes disturbed skeletal morphogenesis in a rat model

Dupuis, H.; Pest, M. A.; Hazdic, E.; Vo, T. X.; Hardy, D. B.; Beier, F.

10.1101/774851 — developmental biology — Posted on 2019-09-18

1418 Correlative three-dimensional super-resolution and block face electron microscopy of whole vitreously frozen cells

Hoffman, D. P.; Shtengel, G.; Xu, C. S.; Campbell, K. R.; Freeman, M.; Wang, L.; Milkie, D. E.; Pasolli, H. A.; Iyer, N.; Bogovic, J. A.; Stabley, D. R.; Shirinifard, A.; Pang, S.; Peale, D.; Schaefer, K.; Pomp, W.; Chang, C.-L.; Lippincott-Schwartz, J.; Kirchhausen, T.; Solecki, D. J.; Betzig, E.; Hess, H. F.

10.1101/773986 — cell biology — Posted on 2019-09-18

1419 Proteasome-mediated protein degradation resets the cell division cycle and triggers ESCRT-III-mediated cytokinesis in an archaeon

Tarrason Risa, G.; Hurtig, F.; Bray, S.; Hafner, A.; Harker-Kirschneck, L.; Faull, P.; Davis, C.; Papatziamou, D.; Mutavchiev, D. R.; Fan, C.; Meneguello, L.; Arashiro Pulschen, A.; Dey, G.; Culley, S.; Kilkenny, M. L.; Pellegrini, L.; de Bruin, R. A. M.; Henriques, R.; Snijders, A. P.; Saric, A.; Lindas, A.-C.; Robinson, N.; Baum, B.

10.1101/774273 — cell biology — Posted on 2019-09-18

1420 Tpm3.1 association with actin stress fibers is required for lens epithelial to mesenchymal transition

Parreno, J.; Amadeo, M. B.; Kwon, E. H.; Fowler, V. M.

10.1101/774794 — cell biology — Posted on 2019-09-18

1421 The inner junction complex of the cilia is an interaction hub that involves tubulin post-translational modifications

Khalifa, A. A. Z.; Ichikawa, M.; Dai, D.; Black, C.; Peri, K.; McAlear, T. S.; Kubo, S.; Veyron, S.; Yang, S. K.; Vargas, J.; Trempe, J.-F.; Bechstedt, S.; Bui, K. H.

10.1101/774695 — biophysics — Posted on 2019-09-18

1422 Reconstruction of Average Subtracted Tubular Regions (RASTR) Enables Structure Determination of Tubular Filaments by Cryo-EM

Randolph, P. S.; Stagg, S. M.

10.1101/774802 — biophysics — Posted on 2019-09-18

1423 Dynamic crosslinking of the actin cytoskeleton governs cell mechanics

Chaubet, L.; Heris, H. K.; Ehrlicher, A. J.; Hendricks, A. G.

10.1101/774935 — biophysics — Posted on 2019-09-18

1424 Photon-statistics in sensitized emission FRET and FLIM: a comparative theoretical analysis

Esposito, A.

10.1101/774919 — biophysics — Posted on 2019-09-18

1425 Sustained organic loading perturbation inhibits nitrite oxidation in bioreactors unveiling variable resistance and resilience of nitrification and nitrifiers

Santillan, E.; Phua, W. X.; Constancias, F.; Wuertz, S.

10.1101/605733 — microbiology — Posted on 2019-09-18

1426 Lesions of canine prostate underwent laser ablation, radiofrequency ablation, and microwave ablation: Lesions shapes and clinical significances

Liu, R.; Zhang, L.; Duan, S.; Cao, H.; Cao, G.; Chang, Z.; Zhang, Y.; Li, Y.; Wu, Y.; Liu, L.

10.1101/774455 — cancer biology — Posted on 2019-09-18

1427 Exercise and angiotensin receptor blockade enhance recovery after orthopaedic trauma in mice by decreasing pain and improving muscle regeneration

Tawfik, V. L.; Quarta, M.; Paine, P.; Forman, T. E.; Pajarinen, J.; Takemura, Y.; Goodman, S. B.; Rando, T. A.; Clark, J. D.

10.1101/773598 — neuroscience — Posted on 2019-09-18

1428 Detection of H3N8 influenza A virus with multiple mammalian-adaptive mutations in a rescued Grey seal (Halichoerus grypus) pup

Venkatesh, D.; Bianco, C.; Nunez, A.; Collins, R.; Thorpe, D.; Reid, S. M.; Brookes, S. M.; Essen, S.; McGinn, N.; Seekings, J.; Cooper, J.; Brown, I. H.; Lewis, N. S.

10.1101/741173 — microbiology — Posted on 2019-09-18

1429 Force-based assessment distinguishes between the age-related and post-stroke changes in the neural control of reaching

Thomas, A. B.; Olesh, E. V.; Adcock, A.; Gritsenko, V.

10.1101/642272 — neuroscience — Posted on 2019-09-18

1430 A network of filament-forming proteins maintains multicellular shape in the cyanobacterium Anabaena sp. PCC 7120

Springstein, B. L.; Nürnberg, D. J.; Kieninger, A.-K.; Woehle, C.; Weissenbach, J.; Theune, M.; Helbig, A. O.; Tholey, A.; Maldener, I.; Dagan, T.; Stucken, K.

10.1101/553073 — microbiology — Posted on 2019-09-18

1431 C. elegans transgenerationally adapts to bacterial infection by increasing the expression of cysteine synthases in progeny

Burton, N. O.; Riccio, C.; Dallaire, A.; Price, J.; Jenkins, B.; Koulman, A.; Miska, E. A.

10.1101/675132 — genetics — Posted on 2019-09-18

1432 Self-organised symmetry breaking in zebrafish reveals feedback from morphogenesis to pattern formation

Trivedi, V.; Fulton, T.; Attardi, A.; Anlas, K.; Dingare, C.; Martinez Arias, A.; Steventon, B. J.

10.1101/769257 — developmental biology — Posted on 2019-09-18

1433 Computational discovery of hidden breaks in 28S rRNA across eukaryotes and consequences for RNA Integrity Numbers

Natsidis, P.; Schiffer, P. H.; Salvador-Martinez, I.; Telford, M. J.

10.1101/773226 — bioinformatics — Posted on 2019-09-18

1434 MICOM: metagenome-scale modeling to infer metabolicinteractions in the microbiota.

Diener, C.; Gibbons, S. M.; Resendis-Antonio, O.

10.1101/361907 — systems biology — Posted on 2019-09-18

1435 Causal adaptation to visual input dynamics governs the development of complex cells in V1

Matteucci, G.; Zoccolan, D.

10.1101/756668 — neuroscience — Posted on 2019-09-18

1436 Lyophilized B. subtilis ZB183 Spores: 90-Day Repeat Dose Oral (Gavage) Toxicity Study In Wistar Rats

Barla, A. N.; Kannan, K.; Kumar, D. P. S.; Oliver, J. W. K.; Abbott, Z. D.

10.1101/724542 — microbiology — Posted on 2019-09-18

1437 Phylogenetic modeling of regulatory element turnover based on epigenomic data

Dukler, N. E.; Huang, Y.-F.; Siepel, A.

10.1101/773614 — evolutionary biology — Posted on 2019-09-18

1438 PGRMC1 phosphorylation and cell plasticity 2: genomic integrity and CpG methylation

Thejer, B. M.; Adhikary, P. P.; Teakel, S. L.; Fang, J.; Weston, P. A.; Gurusinghe, S.; Anwer, A. G.; Gosnell, M.; Jazayeri, J. A.; Ludescher, M.; Gray, L.-A.; Pawlak, M.; Wallace, R. H.; Pant, S. D.; Wong, M.; Fischer, T.; New, E. J.; Fehm, T. N.; Neubauer, H.; Goldys, E. M.; Quinn, J. C.; Weston, L. A.; Cahill, M. A.

10.1101/737783 — cell biology — Posted on 2019-09-18

1439 Structural Basis and Mechanism of TrkA Activation by NGF through Ligand-Induced Rotation of Transmembrane Domain Dimers.

Franco, M. L.; Nadezhdin, K.; Mineev, K.; Goncharuk, S.; Arseniev, A.; Vilar, M.

10.1101/721233 — biochemistry — Posted on 2019-09-18

1440 Adaptive landscape flattening allows the design of both enzyme:substrate binding and catalytic power

Opuu, V.; Nigro, G.; Schmitt, E.; Mechulam, Y.; Simonson, T.

10.1101/771824 — biochemistry — Posted on 2019-09-18

1441 Evaluation of 20 enset (Ensete ventricosum) landraces for response to Xanthomonas vasicola pv. musacearum infection

Muzemil, S.; Chala, A.; Tesfaye, B.; Studholme, D. J.; Grant, M.; Yemataw, Z.; Olango, T. M.

10.1101/736793 — plant biology — Posted on 2019-09-18

Etzel, J.; Courtney, Y.; Carey, C. E.; Gehred, M. Z.; Agrawal, A.; Braver, T. S.

10.1101/642397 — neuroscience — Posted on 2019-09-18

1443 Integrating the metabolic processes of Escherichia coli with virulence by decreasing glucose availability, inhibiting the acetyl-CoA carboxylase gene accA with asRNA, and through the quantification of the luxs gene

Hillman, T.

10.1101/747980 — microbiology — Posted on 2019-09-18

1444 Molecular Landscape of Anti-Drug Antibodies Reveals the Mechanism of the Immune Response Following Treatment with TNF-alpha Antagonists

Vaisman-Mentesh, A.; Rosenstein, S.; Yavzori, M.; Dror, Y.; Fudim, E.; Ungar, B.; Kopylov, U.; Picard, O.; Kigel, A.; Ben-Horin, S.; Benhar, I.; Wine, Y.

10.1101/509489 — immunology — Posted on 2019-09-18

1445 Human loss-of-function variants suggest that partial LRRK2 inhibition is a safe therapeutic strategy for Parkinsons disease

Whiffin, N.; Armean, I. M.; Kleinman, A.; Marshall, J. L.; Minikel, E. V.; Goodrich, J. K.; Quaife, N. M.; Cole, J. B.; Wang, Q.; Karczewski, K. J.; Cummings, B. B.; Francioli, L.; Laricchia, K.; Guan, A.; Alipanahi, B.; Morrison, P.; Baptista, M. A.; Merchant, K. M.; Genome Aggregation Database Production Team, ; Genome Aggregation Database Consortium, ; Ware, J. S.; Havulinna, A. S.; Iliadou, B.; Lee, J.-J.; Nadkarni, G. N.; Whiteman, C.; the 23andMe Research Team, ; Daly, M.; Esko, T.; Hultman, C.; Loos, R. J.; Milani, L.; Palotie, A.; Pato, C.; Pato, M.; Saleheen, D.; Sullivan, P. F.; A

10.1101/561472 — genomics — Posted on 2019-09-18

1446 When do individuals maximize their inclusive fitness?

Lehmann, L.; Rousset, F.

10.1101/624775 — evolutionary biology — Posted on 2019-09-18

1447 Mitotic ER exit site dissociation and reassembly is regulated by TANGO1 phosphorylation status

Maeda, M.; Komatsu, Y.; Saito, K.

10.1101/636506 — cell biology — Posted on 2019-09-18

1448 Personalized deep learning of individual immunopeptidomes to identify neoantigens for cancer vaccines

Tran, N. H.; Qiao, R.; Xin, L.; Chen, X.; Shan, B.; Li, M.

10.1101/620468 — bioinformatics — Posted on 2019-09-18

1449 Computational design and interpretation of live-cell, single-RNA translation experiments

Aguilera, L. U.; Raymond, W.; Fox, Z. R. R.; May, M. P.; Djokic, E.; Morisaki, T.; Stasevich, T. J.; Munsky, B.

10.1101/659987 — systems biology — Posted on 2019-09-18

1450 Learning to Select Actions Shapes Recurrent Dynamics in the Corticostriatal System

Marton, C. D.; Schultz, S.; Averbeck, B.

10.1101/646141 — neuroscience — Posted on 2019-09-18

1451 In silico identification of a molecular circadian system with novel features in the crustacean model organism Parhyale hawaiensis

Hunt, B.; Mallon, E.; Rosato, E.

10.1101/705038 — molecular biology — Posted on 2019-09-18

1452 Characterization of Human Dosage-Sensitive Transcription Factor Genes

Ni, Z.; Zhou, X.-Y.; Aslam, S.; Niu, D.-K.

10.1101/528554 — genetics — Posted on 2019-09-18

1453 Loss of consumers constrains phenotypic evolution in the resulting food web

Barbour, M. A.; Greyson-Gaito, C. J.; Sootodeh, A.; Locke, B.; Bascompte, J.

10.1101/527416 — evolutionary biology — Posted on 2019-09-18

1454 The impact of geographic targeting of oral cholera vaccination in sub-Saharan Africa: a modeling study

Lee, E. C.; Azman, A. S.; Kaminsky, J.; Moore, S. M.; McKay, H.; Lessler, J.

10.1101/617076 — epidemiology — Posted on 2019-09-18

1455 Targeting tumor intrinsic metabolic node in pancreatic cancer causes tumor regression, remodels extracellular matrix and sensitizes to anti-PD1 therapy.

Sharma, N. S.; Gupta, V. K.; Garrido, V. T.; Hadad, R.; Durden, B. C.; Kesh, K.; Giri, B.; Ferrantella, A.; Dudeja, V.; Saluja, A.; Banerjee, S.

10.1101/519462 — cancer biology — Posted on 2019-09-18

1456 Learning optimal decisions with confidence

Drugowitsch, J.; Mendonca, A.; Mainen, Z.; Pouget, A.

10.1101/244269 — neuroscience — Posted on 2019-09-18

1457 Low acetylcholine during early sleep is important for motor memory consolidation

Inayat, S.; Qandeel, Q.; Nazariahangarkolaee, M.; Singh, S.; McNaughton, B. L.; Whishaw, I. Q.; Mohajerani, M. H.

10.1101/494351 — neuroscience — Posted on 2019-09-18

1458 Genomic analysis of European Drosophila populations reveals major longitudinal structure, continent-wide selection, and unknown DNA viruses

Kapun, M.; Barron Aduriz, M. G.; Staubach, F.; Vieira, J.; Obbard, D.; Goubert, C.; Rota Stabelli, O.; Kankare, M.; Haudry, A.; Bogaerts-Marquez, M.; Wiberg, R. A. W.; Waidele, L.; Kozeretska, I.; Pasyukova, E.; Loeschcke, V.; Pascual, M.; Vieira, C. P.; Serga, S.; Montchamp-Moreau, C.; Abbott, J.; Gibert, P.; Porcelli, D.; Posnien, N.; Sanchez-Gracia, A.; Grath, S.; Sucena, E.; Bergland, A.; Garcia Guerreiro, M. P.; Onder, B. S.; Argyridou, E.; Guio, L.; Schou, M. F.; Deplancke, B.; Vieira, C.; Ritchie, M. G.; Zwaan, B.; Tauber, E.; Orengo, D.; Puerma, E.; Aguade, M.; Schmidt, P.; Parsch, J.;

10.1101/313759 — evolutionary biology — Posted on 2019-09-18

1459 Blurred Molecular Epidemiological Lines Between the Two Dominant Methicillin-Resistant Staphylococcus aureus Clones

Dupper, A.; Sullivan, M. J.; Chacko, K. I.; Mishkin, A.; Ciferri, B.; Kumaresh, A.; Berbel Caban, A.; Oussenko, I.; Beckford, C.; Zeitouni, N. E.; Sebra, R.; Hamula, C.; Smith, M.; Kasarskis, A.; Patel, G.; McBride, R. B.; van Bakel, H.; Altman, D. R.

10.1101/501833 — epidemiology — Posted on 2019-09-18

1460 A system biology approach reveals cellular pathway differences between follicular thyroid carcinoma and follicular thyroid adenoma

Hossain, M. A.; Asa, T. A.; Rahman, M. M.; Quinn, J. M. W.; Huq, F.; Moni, M. A.

10.1101/480632 — bioinformatics — Posted on 2019-09-18

1461 Position-dependent effects of cytosine methylation on FWA expression in Arabidopsis thaliana

Srikant, T.; Wibowo, A.; Schwab, R.; Weigel, D.

10.1101/774281 — genetics — Posted on 2019-09-18

1462 An integrative model finds comparable contributions to drug resistance from poor drug adherence and adapting bacteria

Mathews, R. P.; Prakash, M. K.

10.1101/773861 — pharmacology and toxicology — Posted on 2019-09-18

1463 Epigenetic adaptation prolongs photoreceptor survival during retinal degeneration

Dharmat, R.; Kim, S.; Liu, H.; Fu, S.; Li, Y.; Chen, R.

10.1101/774950 — neuroscience — Posted on 2019-09-18

1464 Gain modulation and odor concentration invariance in early olfactory networks

Marachlian, E.; Huerta, R.; Locatelli, F. F.

10.1101/769067 — neuroscience — Posted on 2019-09-18

1465 Bridging sensory and language theories of dyslexia: towards a multifactorial model

O'Brien, G. E.; Yeatman, J. D.

10.1101/773853 — neuroscience — Posted on 2019-09-18

1466 IL-22 induced cell extrusion and IL-18-induced pyroptosis prevent and cure rotavirus infection

Zhang, Z. A.; Zou, J.; Shi, Z.; Zhang, B.; Etienne-Mesmin, L.; Chassaing, B.; Gewirtz, A.

10.1101/774984 — immunology — Posted on 2019-09-18

1467 Parallel clines in native and introduced ragweed populations are likely due to adaptation

McGoey, B.; Hodgins, K. A.; Stinchcombe, J.

10.1101/773838 — evolutionary biology — Posted on 2019-09-18

1468 Deep learning-based auto-segmentation of swallowing and chewing structures in CT

Iyer, A.; Thor, M.; Haq, R.; Deasy, J. O.; Apte, A. P.

10.1101/772178 — bioinformatics — Posted on 2019-09-18

1469 Host resistance diversity protects susceptible genotypes by restricting pathogen spread and evolution

Common, J.; Walker-Sünderhauf, D.; van Houte, S.; Westra, E. R.

10.1101/774349 — evolutionary biology — Posted on 2019-09-18

1470 Myt Transcription Factors prevent stress-response gene over-activation to enable postnatal pancreatic β cell proliferation and function

Hu, R.; Walker, E.; Xu, Y.; Huan, C.; Erickson, G.; Golovin, A.; Yang, X.; Brissova, M.; Balamurugan, A.; Wright, C.; Li, Y.; Stein, R.; Gu, G.

10.1101/773846 — developmental biology — Posted on 2019-09-18

1471 Wood capacitance is related to water content, wood density, and anatomy across 30 temperate tree species

Zieminska, K.; Rosa, E.; Holbrook, N. M.; Gleason, S. M.

10.1101/772764 — plant biology — Posted on 2019-09-18

1472 Neutrophils mediate the capture of peritoneal contaminants by fat-associated lymphoid clusters of the omentum

Jackson-Jones, L. H.; Smith, P.; Magalhaes, M. S.; Portman, J. R.; Mylonas, K. J.; Nixon, M.; Henderson, B. E. P.; Dobie, R.; Henderson, N. C.; Mole, D. J.; Benezech, C.

10.1101/774968 — immunology — Posted on 2019-09-18

1473 Complex multi-trait responses to multivariate environmental cues in a seasonal butterfly

Singh, P.; Bergen, E. v.; Brattström, O.; Osbaldeston, D.; Brakefield, P. M.; Oostra, V.

10.1101/772749 — ecology — Posted on 2019-09-18

1474 Audio-visual combination of syllables involves time-sensitive dynamics following from fusion failure

Bouton, S.; Delgado Saa, J. F.; Olasagasti, I.; Giraud, A.-L.

10.1101/771634 — neuroscience — Posted on 2019-09-18

1475 A unifying framework for synaptic organization on cortical dendrites

Kirchner, J. H.; Gjorgjieva, J.

10.1101/771907 — neuroscience — Posted on 2019-09-18

1476 Operant self-stimulation of thalamic terminals in the dorsomedial striatum is constrained by metabotropic glutamate receptor 2

Johnson, K. A.; Voyvodic, L.; Mateo, Y.; Lovinger, D. M.

10.1101/772525 — neuroscience — Posted on 2019-09-18

1477 The bacterial microbiota of a parasitic plant and its host

Fitzpatrick, C. R.; Schneider, A. C.

10.1101/775155 — ecology — Posted on 2019-09-18

1478 In silico stress fibre content affects peak strain in cytoplasm and nucleus but not in membrane for uniaxial substrate stretch

Abdalrahman, T.; Davies, N. H.; Franz, T.

10.1101/774976 — biophysics — Posted on 2019-09-18

1479 Extraction of genome-wide reads distribution pattern through whole genome sequencing of cell-free DNA for tracking tissue-of-origin in cancer patients

Liang, H.; Li, F.; Qiao, S.; Zhou, X.; Xie, G.; Zhao, X.; Wu, K.

10.1101/772657 — bioinformatics — Posted on 2019-09-18

1480 Pupil diameter tracks statistical structure in the environment

Schwiedrzik, C. M.; Sudmann, S. S.

10.1101/770982 — neuroscience — Posted on 2019-09-18

1481 PHENOTYPIC AND GENETIC CORRELATION BETWEEN SLEEP, BEHAVIOR, AND MACROSCALE CORTICAL GREY MATTER

Tahmasian, M.; Samea, F.; Khazaie, H.; Zarei, M.; Hoffstaedter, F.; Camilleri, J. A.; Kochunov, P.; Kharabian, S.; Yeo, B. T. T.; Eickhoff, S.; Valk, S. L.

10.1101/772681 — neuroscience — Posted on 2019-09-18

1482 Microstructure Diffusion Scalar Measures from Reduced MRI Acquisitions

Aja-Fernandez, S.; de Luis-Garcia, R.; Afzali, M.; Molendowska, M.; Pieciak, T.; Tristan-Vega, A.

10.1101/772897 — neuroscience — Posted on 2019-09-18

1483 Genes for ash tree resistance to an insect pest identified via comparative genomics

Kelly, L. J.; Plumb, W. J.; Carey, D. W.; Mason, M. E.; Cooper, E. D.; Crowther, W.; Whittemore, A. T.; Rossiter, S. J.; Koch, J. L.; Buggs, R. J.

10.1101/772913 — evolutionary biology — Posted on 2019-09-18

1484 Personalized Cancer Therapy Prioritization Based on Driver Alteration Co-occurrence Patterns

Mateo, L.; Duran-Frigola, M.; Gris-Oliver, A.; Palafox, M.; Scaltriti, M.; Razavi, P.; Chandarlapaty, S.; Arribas, J.; Bellet, M.; Serra, V.; Aloy, P.

10.1101/772673 — cancer biology — Posted on 2019-09-18

1485 I-Impute: a self-consistent method to impute single cell RNA sequencing data

FENG, X.; Chen, L.; Wang, Z.; Li, S. C.

10.1101/772723 — bioinformatics — Posted on 2019-09-18

1486 How flat can a horse be? Exploring 2D approximations of 3D crania in equids

Cardini, A.; Chiappelli, M.

10.1101/772624 — zoology — Posted on 2019-09-18

1487 Physical Activity Induces Nucleus Accumbens Genes Expression Changes Preventing Chronic Pain Susceptibility Promoted by High-Fat Diet and Sedentary Behavior in Mice

Brandao, A. d. F.; Bonet, I. J. M.; Pagliusi, M. O. F.; Zanetti, G. G.; Pho, N.; Tambeli, C. H.; Parada, C. A.; Vieira, A. S.; Sartori, C. R.

10.1101/768309 — neuroscience — Posted on 2019-09-18

1488 Reliability of Mismatch Negativity Event-Related Potentials in a Multisite, Traveling Subjects Study

Roach, B.; Carrion, R. E.; Hamilton, H. K.; Bachman, P.; Belger, A.; Duncan, E.; Johannesen, J.; Light, G. A.; Niznikiewicz, M.; Addington, J.; Bearden, C. E.; Cadenhead, K. S.; Cannon, T. D.; Cornblatt, B. A.; McGlashan, T. H.; Perkins, D. O.; Seidman, L. J.; Tsuang, M.; Walker, E. F.; Woods, S. W.; Mathalon, D. H.

10.1101/768408 — neuroscience — Posted on 2019-09-18

1489 Characterizing the Network Architecture of Emotion Regulation Neurodevelopment

Guassi Moreira, J. F.; McLaughlin, K. A.; Silvers, J. A.

10.1101/773895 — neuroscience — Posted on 2019-09-18

1490 Selection of representative genomes for 24,706 bacterial and archaeal species clusters provide a complete genome-based taxonomy

Parks, D. H.; Chuvochina, M.; Chaumeil, P.-A.; Rinke, C.; Mussig, A. J.; Hugenholtz, P.

10.1101/771964 — microbiology — Posted on 2019-09-18

1491 Derived Homo sapiens cis-eQTL regulation: implications for brain evolution

Andirko, A.; Boeckx, C.

10.1101/771816 — genetics — Posted on 2019-09-18

1492 Anatomically Informed 3D Printed CT phantoms: The First Step of a Pipeline To Identify Robust Quantitative Radiomic Features

Mahmood, U.; Apte, A.; Kanan, C.; Bates, D.; Corrias, G.; Mannelli, L.; Oh, J. H.; Erdi, Y. E.; Nguyen, J.; Deasy, J. O.; Dave, A. S.

10.1101/773879 — biophysics — Posted on 2019-09-18

1493 Microscale physiological events on the human cortical surface detected with PEDOT:PSS Electrodes

Paulk, A. C.; Yang, J. C.; Cleary, D. R.; Soper, D. J.; Lee, S. H.; Ganji, M.; Ro, Y. G.; Oh, H.; Hossain, L.; Rogers, N.; Kilic, K.; Ryu, S. B.; Lee, S. W.; Hermiz, J.; Gilja, V.; Lee, J. W.; Maus, D.; Devor, A.; Fried, S. I.; Jones, P. S.; Nahed, B. V.; Ben-Haim, S.; Raslan, A. M. T.; Siler, D. A.; Cahill, D. P.; Williams, Z. M.; Cosgrove, G. R.; Dayeh, S. A.; Cash, S. S.

10.1101/770743 — neuroscience — Posted on 2019-09-18

1494 Adrenergic C1 neurons are part of the circuitry that recruits active expiration in response to hypoxia

Malheiros-Lima, M. R.; Silva, J. N.; Souza, F. C.; Takakura, A. C.; Moreira, T. S.

10.1101/774570 — neuroscience — Posted on 2019-09-18

1495 Direct and High-Throughput Assays for Human Cell Killing through Trogocytosis by Entamoeba histolytica

Bettadapur, A.; Ralston, K. S.

10.1101/768069 — microbiology — Posted on 2019-09-18

1496 Structural changes in the gut microbiome of short-term and long-term medical workers compared to normal controls

Zheng, N.; Yan, Q.; Ma, Y.; wan, x.; Li, S.; Dong, B.; Sun, W.; Li, H.; Zhang, Y.; Li, P.; Fang, Z.; Chen, C.; Han, X.; Li, B.; Zhang, S.; Xu, M.; Zhang, G.; Xin, Y.

10.1101/772590 — microbiology — Posted on 2019-09-18

1497 GpABC: a Julia package for approximate Bayesian computation with Gaussian process emulation

Tankhilevich, E.; Ish-Horowicz, J.; Hameed, T.; Roesch, E.; Stumpf, M.; He, F.

10.1101/769299 — systems biology — Posted on 2019-09-18

1498 Mechanical characterization of compliant neural probes, their insertion regimes and a rule of thumb design

Smith, Z.

10.1101/770107 — neuroscience — Posted on 2019-09-18

1499 New mutant mouse models clarify the role of NAIPs, phosphorylation, NLRP3, and tumors in NLRC4 inflammasome activation

Tenthorey, J.; Chavez, R. A.; Thompson, T. W.; Deets, K. A.; Vance, R. E.; Rauch, I.

10.1101/765313 — immunology — Posted on 2019-09-18

1500 Coupling Terrestrial Laser Scanning with 3D Fuel Biomass Sampling for Advancing Wildland Fuels Characterization

Rowell, E.; Loudermilk, E. L.; Hawley, C. M.; Pokswinski, S.; Seielstad, C.; Queen, L. P.; O'Brien, J. J.; Hudak, A. T.; Goodrick, S. L.; Hiers, J. K.

10.1101/771469 — ecology — Posted on 2019-09-18

1501 Improving personalized prediction of cancer prognoses with clonal evolution models

Tao, Y.; Rajaraman, A.; Cui, X.; Cui, Z.; Eaton, J.; Kim, H.; Ma, J.; Schwartz, R.

10.1101/761510 — cancer biology — Posted on 2019-09-18

1502 Heart Rate Variability with Photoplethysmography in 8 Million Individuals: Results and Scaling Relations with Age, Gender, and Time of Day

Natarajan, A.; Emir-Farinas, H.; Pantelopoulos, A.; Natarajan, P.

10.1101/772285 — physiology — Posted on 2019-09-18

1503 Objects seen as scenes: neural circuitry for attending whole or parts

Valdes-Sosa, M. J.; Ontivero-Ortega, M.; Iglesias-Fuster, J.; Lage-Castellanos, A.; Gong, J.; Luo, C.; Castro-Laguardia, A. M.; Bobes-Leon, M. A.; Marinazzo, D.; Yao, D.

10.1101/771899 — neuroscience — Posted on 2019-09-18

1504 Flexible routing of motor control signals through neocortical projection neuron classes

Park, J.; Phillips, J. A.; Martin, K. A.; Hantman, A. W.; Dudman, J. T.

10.1101/772517 — neuroscience — Posted on 2019-09-18

1505 Estimating northern fur seal pup production: A case study of batch mark abundance estimation

Johnson, D. S.; Towell, R.; Baker, J.

10.1101/772350 — ecology — Posted on 2019-09-18

1506 Beyond the ecology of fear: non-lethal effects of predators are strong whereas those of parasites are diverse

Daversa, D. R.; Hechinger, R. F.; Madin, E.; Fenton, A.

10.1101/766477 — ecology — Posted on 2019-09-18

1507 Paired Associative Stimulation Fails to Induce Plasticity in Freely Behaving Intact Rats

Ting, W. K.-C.; Huot-Lavoie, M.; Ethier, C.

10.1101/765636 — neuroscience — Posted on 2019-09-18

1508 Habenular and striatal activity during performance feedback are differentially linked with state-like and trait-like aspects of tobacco use disorder

Flannery, J. S.; Riedel, M. C.; Poudel, R.; Laird, A. R.; Ross, T. J.; Salmeron, B. J.; Stein, E. A.; Sutherland, M. T.

10.1101/771915 — neuroscience — Posted on 2019-09-18

1509 DMSO potentiates the suppressive effect of dronabinol, a cannabinoid, on sleep apnea and REM sleep

Calik, M. W.; Carley, D. W.

10.1101/769463 — neuroscience — Posted on 2019-09-18

1510 Phasic dopamine enhances the distinct decoding and perceived salience of stimuli

Oettl, L.-L.; Scheller, M.; Wieland, S.; Haag, F.; Wolf, D.; Loeb, C.; Ravi, N.; Durstewitz, D.; Shusterman, R.; Russo, E.; Kelsch, W.

10.1101/771162 — neuroscience — Posted on 2019-09-18

1511 Rheumatoid arthritis patients express a skewed repertoire of polyclonal, hypomutated B-cell receptors

Cowan, G. J. M.; Miles, K.; Capitani, L.; Giguere, S. S. B.; Johnsson, H.; Goodyear, C.; McInnes, I. B.; Scottish Early Rheumatoid Arthritis Inception cohort Investigators, ; Breusch, S.; Gray, D.; Gray, M.

10.1101/771949 — immunology — Posted on 2019-09-18

1512 Testing Finch’s hypothesis: the role of organismal modularity on the escape from actuarial senescence

Bernard, C.; Compagnoni, A.; Salguero-Gomez, R.

10.1101/771378 — ecology — Posted on 2019-09-18

1513 Angle-tuned Coil: A Focal Spot-size Adjustable Transcranial Magnetic Stimulator

Meng, Q.; Bagherzadeh, H.; Loiacono, J.; Du, X.; Hong, E.; Yang, Y.; Lu, H.; Choa, F.-S.

10.1101/771758 — bioengineering — Posted on 2019-09-18

1514 Y-RNAs Lead an Endogenous Program of RIG-I Agonism Mobilized upon RNA Virus Infection and Targeted by HIV

Vabret, N.; Najburg, V.; Solovyov, A.; Sulc, P.; Balan, S.; Beauclair, G.; Chazal, M.; Varet, H.; Legendre, R.; Sismeiro, O.; Sanchez David, R.; McClain, C.; Gopal, R.; Chauveau, L.; Schwartz, O.; Jouvenet, N.; Markowitz, M.; Tangy, F.; Bhardwaj, N.; Greenbaum, B.; Komarova, A.

10.1101/773820 — immunology — Posted on 2019-09-18

1515 Not so dry after all. DRY mutants of the AT1A receptor and H1 receptor can induce G protein-dependent signaling

Pietraszewska-Bogiel, A.; Joosen, L.; Goedhart, J.

10.1101/773044 — molecular biology — Posted on 2019-09-18

1516 Extended Amygdala Kappa Opioid Receptor Signaling Gates Alcohol-induced Stress Impairments in Mice

Hwa, L. S.; Neira, S.; Flanigan, M. E.; Stanhope, C. M.; Pina, M. M.; Pati, D. S.; Hon, O. J.; Yu, W.; Kokush, E.; Calloway, R.; Boyt, K.; Kash, T. L.

10.1101/773481 — neuroscience — Posted on 2019-09-18

1517 Epilepsy and neurobehavioral abnormalities in mice with a KCNB1 pathogenic variant that alters conducting and non-conducting functions of KV2.1

Hawkins, N. A.; Misra, S. N.; Jurado, M.; Vierra, N. C.; Nguyen, K.; Wren, L.; George, A. L.; Trimmer, J. L.; Kearney, J. A.

10.1101/770206 — neuroscience — Posted on 2019-09-18

1518 Modelling Inoculum Availability of Plurivorosphaerella nawae in Persimmon Leaf Litter with Bayesian Beta Regression

Martinez-Minaya, J.; Conesa, D.; Lopez-Quilez, A.; Mira, J. L.; Vicent, A.

10.1101/771667 — pathology — Posted on 2019-09-18

1519 On a simple general principle of brain organization.

Perez Velazquez, J. L.; Mateos, D. M.; Guevara Erra, R.

10.1101/771535 — neuroscience — Posted on 2019-09-18

1520 \"Green pointillism\": Detecting the within-population variability of budburst in temperate deciduous trees with phenological cameras

Delpierre, N.; Soudani, K.; Berveiller, D.; Dufrene, E.; Hmimina, G.; Vincent, G.

10.1101/771477 — ecology — Posted on 2019-09-18

1521 Ultrasensitive Molecular Imaging of Mucosal Inflammation Using Leucocyte-Mimicking Particles Targeted to MAdCAM-1

Fournier, A. P.; Rateau, A.; Geard-Brisou, A.; Waldner, M. J.; Neurath, M. F.; Vivien, D.; Docagne, F.; Gauberti, M.

10.1101/771659 — bioengineering — Posted on 2019-09-18

1522 Thinking small: next-generation sensor networks close the size gap in vertebrate biologging

Ripperger, S. P.; Carter, G. G.; Page, R. A.; Duda, N.; Koelpin, A.; Weigel, R.; Hartmann, M.; Nowak, T.; Thielecke, J.; Schadhauser, M.; Robert, J.; Herbst, S.; Meyer-Wegener, K.; Waegemann, P.; Schroeder-Preikschat, W.; Cassens, B.; Kapitza, R.; Dressler, F.; Mayer, F.

10.1101/767749 — animal behavior and cognition — Posted on 2019-09-18

1523 Functional connectivity between the entorhinal and posterior cingulate cortices associated with navigation impairment following path integration in at-genetic-risk Alzheimer’s disease

Coughlan, G.; Zhukovsky, P.; Puthusseryppady, V.; Gillings, R.; Minihane, A.-M.; Cameron, D.; Hornberger, M.

10.1101/771170 — neuroscience — Posted on 2019-09-18

1524 Network-based clustering for drug sensitivity prediction in cancer cell lines

Pouryahya, M.; Oh, J. H.; Mathews, J. C.; Belkhatir, Z.; Moosmuller, C.; Deasy, J. O.; Tannenbaum, A. R.

10.1101/764043 — bioinformatics — Posted on 2019-09-18

1525 MYC-associated factor MAX is an essential regulator of the clock core network

Blazevits, O.; Bolshette, N.; Vecchio, D.; Guijarro, A.; Croci, O.; Campaner, S.; Grimaldi, B.

10.1101/771329 — molecular biology — Posted on 2019-09-18

1526 A potential genomic recombination site upstream of the rfb locus in Leptospira interrogans is associated with serogroup Serjoe and serovar Hardjo classification

Cosate, M. R. V.; Sakamoto, T.; Moreira, E. C.; Ortega, J. M.; Leite, R. C.; Haddad, J. P. A.; Mendes, T. A. O.

10.1101/771931 — genomics — Posted on 2019-09-18

1527 Deep Mutational Scan of a cardiac sodium channel voltage sensor

Glazer, A. M.; Kroncke, B. M.; Matreyek, K. A.; Yang, T.; Wada, Y.; Shields, T.; Salem, J.-E.; Fowler, D. M.; Roden, D.

10.1101/773887 — genetics — Posted on 2019-09-18

1528 Molecular correlates and therapeutic targets in T cell-inflamed versus non-T cell-inflamed tumors across cancer types

Bao, R.; Luke, J. J.

10.1101/773127 — cancer biology — Posted on 2019-09-18

1529 Unpacking the Allee effect: determining individual-level mechanisms that drive global population dynamics

Fadai, N. T.; Johnston, S. T.; Simpson, M. J.

10.1101/774000 — biophysics — Posted on 2019-09-18

1530 Hydrodynamic regime drives flow reversals in suction feeding larval fishes during early ontogeny

Krishnan, K.; Nafi, A. S.; Gurka, R.; Holzman, R.

10.1101/771436 — zoology — Posted on 2019-09-18

1531 Computationally Guided Design of Dipeptidyl Peptidase-4 Inhibitors

Reynolds, L. C.; Connolly, M. P.; Siegel, J. B.

10.1101/772137 — pharmacology and toxicology — Posted on 2019-09-18

1532 Withdrawal from Chronic Ethanol Exposure Increases Postsynaptic Glutamate Function of Insular Cortex Projections to the Rat Basolateral Amygdala

McGinnis, M. M.; Parrish, B. C.; McCool, B. A.

10.1101/772053 — neuroscience — Posted on 2019-09-18

1533 Exercise and angiotensin receptor blockade enhance recovery after orthopaedic trauma in mice by decreasing pain and improving muscle regeneration

Tawfik, V. L.; Quarta, M.; Paine, P.; Forman, T. E.; Pajarinen, J.; Takemura, Y.; Goodman, S. B.; Rando, T. A.; Clark, J. D.

10.1101/773598 — neuroscience — Posted on 2019-09-18

1534 Whole Cell Phenotypic Screening Of MMV Pathogen Box identifies Specific Inhibitors of Plasmodium falciparum merozoite maturation and egress.

Patra, A.; Hingamire, T.; Belekar, M.; Xiong, A.; Subramanian, G.; Bozdech, Z.; Preiser, P.; Shanmugam, D.; CHANDRAMOHANADAS, R.

10.1101/772434 — microbiology — Posted on 2019-09-18

1535 Mechanical Stimuli Affect E. coli Heat Stable Enterotoxin-cyclic GMP Signaling in a Human Enteroid Intestine-Chip Diarrhea Model

sunuwar, l.; Yin, J.; Kasendra, m.; karalis, k.; Kaper, J.; Fleckenstein, J. M.; Donowitz, M.

10.1101/772608 — microbiology — Posted on 2019-09-18

1536 Viral host-range evolvability changes in response to fluctuating selection

Mouchka, M. E.; Dorsey, D. M.; Malcangio, G. L.; Medina, S. J.; Stuart, E. C.; Meyer, J. R.

10.1101/771998 — evolutionary biology — Posted on 2019-09-18

1537 Active modulation of Hydrogen bonding by sericin enhances cryopreservation outcomes

Underwood, L.; Solocinski, J.; Rosiek, E.; Osgood, Q.; Chakraborty, N.

10.1101/773721 — bioengineering — Posted on 2019-09-18

1538 DHH1/DDX6-like RNA helicases maintain ephemeral half-lives of stress-response mRNAs associated with innate immunity and growth inhibition

Chantarachot, T.; Sorenson, R. S.; Hummel, M.; Ke, H.; Kettenburg, A. T.; Chen, D.; Aiyetiwa, K.; Dehesh, K.; Eulgem, T.; Sieburth, L. E.; Bailey-Serres, J.

10.1101/772087 — plant biology — Posted on 2019-09-18

1539 Coagulopathy signature precedes and predicts severity of end-organ heat stroke pathology in a mouse model

Proctor, E. A.; Dineen, S. M.; Van Nostrand, S. C.; Kuhn, M. K.; Barrett, C. D.; Brubaker, D. K.; Yaffe, M. B.; Lauffenburger, D. A.; Leon, L. R.

10.1101/771410 — physiology — Posted on 2019-09-18

1540 Identification of FMRP target genes expressed in corticogenesis: implication for common phenotypes among neurodevelopmental disorders

Casingal, C. R.; Kikkawa, T.; Inada, H.; Osumi, N.

10.1101/769026 — neuroscience — Posted on 2019-09-18

1541 Site-specific hyperphosphorylation of tau inhibits its fibrillization in vitro, blocks its seeding capacity in cells, and disrupts its microtubule binding; Implications for the native state stabilization of tau

Lashuel, H. A.; Haj-Yahya, M.; Pushparathinam, G.; Rajasekhar, k.; Mirbaha, H.; Diamond, M. I.

10.1101/772046 — neuroscience — Posted on 2019-09-18

1542 Clinical severity in Fanconi anemia correlates with residual function of FANCB missense variants

Jung, M.; Ramanagoudr-Bhojappa, R.; van Twest, S.; Ozgur Rosti, R.; Murphy, V. J.; Tan, W.; Donovan, F.; Lach, F.; Kimble, D.; Jiang, C.; Vaughan, R.; Mehta, P.; Pierri, F.; Doufour, C.; Auerbach, A. D.; Deans, A. J.; Smogorzewska, A.; Chandrasekharappa, S. C.

10.1101/772574 — molecular biology — Posted on 2019-09-18

1543 Novel insights into the regulation of chemerin expression: role of acute-phase cytokines and DNA methylation

Kwiecien, K.; Brzoza, P.; Majewski, P.; Skulimowska, I.; Bednarczyk, K.; Cichy, J.; Kwitniewski, M.

10.1101/765834 — molecular biology — Posted on 2019-09-18

1544 Vinculin targeting by Shigella IpaA promotes stable cell adhesion independent of mechanotransduction

Valencia-Gallardo, C.; Aguilar Salvador, D. I.; Khazad, H.; Bou-Nader, C.; Malosse, C.; Borges-Lima, D.; Bello, C.; Cocom-Chan, B.; Quenech'Du, N.; Mazhar, B.; Javelaud, D.; Fattaccioli, J.; Mauviel, A.; Fontecave, M.; Asnacios, A.; Chamot-Rooke, J.; Malmstrom, L.; Tran Van Nhieu, G.

10.1101/773283 — microbiology — Posted on 2019-09-18

1545 Spatiotemporal dynamics of RNA virus diversity in a phyllosphere microbial community

Bono, L. M.; Orton, R. J.; Peredo, E. L.; Morrison, H. G.; Sistrom, M. J.; Simmons, S.; Turner, P.

10.1101/772475 — microbiology — Posted on 2019-09-18

1546 Establishing the phenotypic basis of adherent-invasive Escherichia coli (AIEC) pathogenicity in intestinal inflammation

Kittana, H.; Gomes Neto, J. C.; Heck, K.; Sughroue, J.; Xian, Y.; Mantz, S.; Segura Munoz, R. R.; Cody, L. A.; Schmaltz, R. J.; Anderson, C. L.; Moxley, R. A.; Hostetter, J. M.; Fernando, S. C.; Clarke, J.; Kachman, S. D.; Cressler, C. E.; Benson, A. K.; Walter, J.; Ramer-Tait, A. E.

10.1101/772012 — microbiology — Posted on 2019-09-18

1547 Deletions of distant regulatory sequences upstream of zebrafish pitx2 result in a range of ocular phenotypes.

Weh, E.; Sorokina, E. A.; Hendee, K.; Gould, D.; Semina, E.

10.1101/772426 — genetics — Posted on 2019-09-18

1548 Endogenous retroviruses are a source of oncogenic enhancers in acute myeloid leukemia

Deniz, O.; Ahmed, M.; Todd, C. D.; Rio-Machin, A.; Dawson, M. A.; Branco, M. R.

10.1101/772954 — genetics — Posted on 2019-09-18

1549 Incorporating fossil uncertainty is essential to macroevolutionary inferences: Combined evidence dating of Australian macropods

Brennan, I. G.

10.1101/772558 — evolutionary biology — Posted on 2019-09-18

1550 Genome-wide selection scan in the Kuwaiti population identifies a TNKS haplotype linked to metabolic traits and hypertension

Eaaswarkhanth, M.; Santos, A. L. C.; Gokcumen, O.; Al-Mulla, F.; Thanaraj, T. A.

10.1101/765651 — evolutionary biology — Posted on 2019-09-18

1551 Cardiomyocyte cell cycling, maturation, and growth by multinucleation in postnatal swine

Velayutham, N.; Alfieri, C. M.; Agnew, E. J.; Riggs, K. W.; Baker, R. S.; Zafar, F.; Yutzey, K. E.

10.1101/773101 — developmental biology — Posted on 2019-09-18

1552 The pericardium promotes cardiac repair and remodelling post-myocardial infarction

Mylonas, K. J.; Jackson-Jones, L. H.; Andrews, J. P. M.; Magalhaes, M. S.; Meloni, M.; Joshi, N. V.; Allen, J. E.; Newby, D. E.; Dweck, M. R.; Gray, G. A.; Benezech, C. A.

10.1101/771154 — physiology — Posted on 2019-09-18

1553 Active transport of brilliant blue FCF across the Drosophila midgut and Malpighian tubule epithelia

Livingston, D. B. H.; Patel, H.; Donini, A.; MacMillan, H. A.

10.1101/771675 — physiology — Posted on 2019-09-18

1554 Neural Mechanisms for Executive Control of Speed-Accuracy Tradeoff

Reppert, T.; Heitz, R. P.; Schall, J. D.

10.1101/773549 — neuroscience — Posted on 2019-09-18

1555 Discovery of a novel synergistic antimycobacterial combination targeting EfpA using large-scale chemical-genetics

Johnson, E. O.; Office, E.; Kawate, T.; Orzechowski, M.; Hung, D. T.

10.1101/772459 — microbiology — Posted on 2019-09-18

1556 Altered gut microbiota and immunity defines Plasmodium vivax survival in Anopheles stephensi

Sharma, P.; Rani, J.; Chauhan, C.; Yadav, S.; Tevatiya, S.; De, T. D.; Pandey, K. C.; Dixit, R.

10.1101/774075 — genomics — Posted on 2019-09-18

1557 Evolutionary origins of epidemic potential among human RNA viruses

Lu, L.; Brierley, L.; Robertson, G.; Zhang, F.; Lycett, S. J.; Smith, D.; Chase-Topping, M.; Simmonds, P.; Woolhouse, M. E. J.

10.1101/771394 — evolutionary biology — Posted on 2019-09-18

1558 Atlas of the Neuromuscular System in the Trachymedusa Aglantha digitale (Hydrozoa.

Moroz, L. L.; Nokekian, T. P.

10.1101/772418 — evolutionary biology — Posted on 2019-09-18

1559 Plastid phylogenomics of the orchid family: Solving phylogenetic ambiguities within Cymbidieae and Orchidoideae

Serna Sanchez, M. A.; Alvarez Yela, A. C.; Arcila Galvis, J. E.; Perez Escobar, O. A.; Dodsworth, S.; Arias, T.

10.1101/774018 — evolutionary biology — Posted on 2019-09-18

1560 Golgi-localized PAQR4 mediates Anti-apoptotic Ceramidase Activity in Breast Cancer

Pedersen, L.; Panahandeh, P.; Siraji, M. I.; Knappskog, S.; Lonning, P. E.; Zhu, Q.; Gordillo, R.; Scherer, P. E.; Molven, A.; Teigen, K.; Halberg, N.

10.1101/772665 — cancer biology — Posted on 2019-09-18

1561 The investigation of the role of VHL-HIF signaling in DNA repair and apoptosis in zebrafish

Kim, H. R.; Santhakumar, K.; Markham, E.; Baldera, D.; Bryant, H. E.; El-Khamisy, S. F.; van Eeden, F. J.

10.1101/767459 — cancer biology — Posted on 2019-09-18

1562 Learning Representations for Gene Ontology Terms by Contextualized Text Encoders

Duong, D.; Uppunda, A.; Ju, C. J.-T.; Zhang, J.; Chen, M.; Eskin, E.; Li, J. J.; Chang, K.-W.

10.1101/765644 — bioinformatics — Posted on 2019-09-18

1563 Computational discovery of hidden breaks in 28S rRNA across eukaryotes and consequences for RNA Integrity Numbers

Natsidis, P.; Schiffer, P. H.; Salvador-Martinez, I.; Telford, M. J.

10.1101/773226 — bioinformatics — Posted on 2019-09-18

1564 scHiCTools: a computational toolbox for analyzing single cell Hi-C data

Feng, F.; Liu, J.

10.1101/769513 — bioinformatics — Posted on 2019-09-18

1565 Comparative analyses of parasites with a comprehensive database of genome-scale metabolic models

Carey, M. A.; Medlock, G. L.; Stolarczyk, M.; Petri, W. A.; Guler, J. L.; Papin, J. A.

10.1101/772467 — systems biology — Posted on 2019-09-18

1566 An atypical DYRK kinase connects quorum-sensing with posttranscriptional gene regulation in Trypanosoma brucei

Cayla, M.; McDonald, L.; MacGregor, P.; Matthews, K.

10.1101/771873 — microbiology — Posted on 2019-09-18

1567 H. pylori infection inhibits autophagy to aggravate DNA damage by p62-mediated Rad51 ubiquitination

Lu, N.; Xie, C.; Li, N.; Wang, H.; He, C.; Hu, Y.; Peng, C.; Ouyang, Y.; Wang, H.; Xie, Y.; Chen, J.; Shu, X.; Zhu, Y.

10.1101/771519 — microbiology — Posted on 2019-09-18

1568 RstA Regulation of Clostridioides difficile Toxin Production and Sporulation in Phenotypically Diverse Strains

Edwards, A. N.; Krall, E. G.; McBride, S. M.

10.1101/774125 — microbiology — Posted on 2019-09-18

1569 Stat2 loss disrupts damage signalling and is protective in acute pancreatitis

Heath, H.; Britton, G.; Kudo, H.; Renney, G.; Ward, M.; Hutchins, R.; Foster, G.; Goldin, R.; Alazawi, W.

10.1101/770750 — immunology — Posted on 2019-09-18

1570 Allele Specific Expression and Gene Regulation Explain Transgressive Thermal Tolerance in Non-native Hybrids of the Endangered California Tiger Salamander (Ambystoma californiense)

Cooper, R. D.; Shaffer, H. B.

10.1101/772020 — genomics — Posted on 2019-09-18

1571 Muntjac chromosome evolution and architecture

Mudd, A. B.; Bredeson, J. V.; Baum, R.; Hockemeyer, D.; Rokhsar, D. S.

10.1101/772343 — genomics — Posted on 2019-09-18

1572 A RETINOBLASTOMA-RELATED transcription factor network governs egg cell differentiation and stress response in Arabidopsis

Kirioukhova-Johnston, O.; Pawar, P.; Govind, G.; Pantha, P.; Lemcke, R.; Nandana, V.; Larsen, D. S.; Rhahul, A. M.; Shah, J. N.; Born, P. v.; Wijesinghege, C.; Zhou, Y.; Gruissem, W.; Turck, F.; Dassanayake, M.; Johnston, A. J.

10.1101/772400 — genetics — Posted on 2019-09-18

1573 The wide distribution and horizontal transfers of beta satellite DNA in eukaryotes

Guo, Y.

10.1101/772921 — evolutionary biology — Posted on 2019-09-18

1574 Phylogenetic modeling of regulatory element turnover based on epigenomic data

Dukler, N. E.; Huang, Y.-F.; Siepel, A.

10.1101/773614 — evolutionary biology — Posted on 2019-09-18

1575 Sequence and Structural Determinants of Ligand-dependent Alternating Access of a MATE Transporter

Jagessar, K. L.; Claxton, D. P.; Stein, R. A.; Mchaourab, H. S.

10.1101/773572 — biophysics — Posted on 2019-09-18

1576 Automated Gene Data Integration with Databio

Reid, R. W.; Ferrier, J. W.; Jay, J. J.

10.1101/768077 — bioinformatics — Posted on 2019-09-18

1577 Deep characterization of the protein lysine acetylation in human gut microbiome and its alterations in patients with Crohn’s disease

Zhang, X.; Ning, Z.; Mayne, J.; Deeke, S. A.; Walker, K.; Farnsworth, C. L.; Stokes, M. P.; Mack, D.; Stintzi, A.; Figeys, D.

10.1101/772483 — systems biology — Posted on 2019-09-18

1578 Assessment of Robustness to Temperature in a Negative Feedback Loop and a Feedforward Loop

Patel, A.; Murray, R. M.; Sen, S.

10.1101/774042 — synthetic biology — Posted on 2019-09-18

1579 Spatial transcriptional signatures define margin morphogenesis along the proximal-distal and medio-lateral axes in complex leaf species Solanum lycopersicum (tomato)

Martinez, C. C.; Li, S.; Woodhouse, M. R.; Sugimoto, K.; Sinha, N. R.

10.1101/772228 — plant biology — Posted on 2019-09-18

1580 Premature induction of Lysyl Oxidase drives early arterial stiffening in Hutchinson-Gilford Progeria Syndrome

von Kleeck, R.; Brankovic, S.; Roberts, I.; Hawthorne, E.; Bruun, K.; Castagnino, P.; Assoian, R.

10.1101/773184 — molecular biology — Posted on 2019-09-18

1581 Modulation of peptidoglycan synthesis by recycled cell wall tetrapeptides

Hernandez, S. B.; Doerr, T.; Waldor, M. K.; Cava, F.

10.1101/771642 — microbiology — Posted on 2019-09-18

1582 NLRP3- and AIM2-autonomy in a mouse model of MSU crystal-induced acute inflammation in vivo highlights imiquimod-dependent targeting of Il-1 expression as relevant therapy for gout patients.

Mariotte, A.; Decauwer, A.; Po, C.; Abou-Faycal, C.; Pichot, A.; Paul, N.; Aouadi, I.; Carapito, R.; Frisch, B.; Macquin, C.; Chatelus, E.; Sibilia, J.; Armspach, J.-P.; Bahram, S.; Georgel, P.

10.1101/772756 — immunology — Posted on 2019-09-18

1583 sRNAanno --- a database repository of uniformly-annotated small RNAs in plants

Chen, C.; Feng, J.; Liu, B.; Li, J.; Feng, L.; Yu, X.; Zhai, J.; Meyers, B. C.; Xia, R.

10.1101/771121 — genomics — Posted on 2019-09-18

1584 Multi-trait random regression models increase genomic prediction accuracy for a temporal physiological trait derived from high-throughput phenotyping

Baba, T.; Momen, M.; Campbell, M. T.; Walia, H.; Morota, G.

10.1101/772038 — genetics — Posted on 2019-09-18

1585 An African origin for Mycobacterium bovis

Loiseau, C. M.; Menardo, F.; Aseffa, A.; Hailu, E.; Gumi, B.; Ameni, G.; Berg, S.; Rigouts, L.; Robbe-Austerman, S.; Zinsstag, J.; Gagneux, S.; Brites, D.

10.1101/773192 — evolutionary biology — Posted on 2019-09-18

1586 SCAR FORMATION AND DECREASED CARDIAC FUNCTION FOLLOWING ISCHEMIA/REPERFUSION INJURY IN 1-MONTH-OLD SWINE

Agnew, E. J.; Velayutham, N.; Matos Ortiz, G.; Alfieri, C. M.; Moore, V.; Riggs, K. W.; Baker, R. S.; Gibson, A. M.; Ponny, S. R.; Alsaied, T.; Zafar, F.; Yutzey, K. E.

10.1101/773218 — developmental biology — Posted on 2019-09-18

1587 The transcriptional co-repressor CtBP is a negative regulator of growth that antagonizes the Yorkie and JNK/AP-1 pathways

Sumabat, T. M.; Worley, M. I.; Pellock, B. J.; Bosch, J. A.; Hariharan, I. K.

10.1101/772533 — developmental biology — Posted on 2019-09-18

1588 Lysenin toxin insertion mechanism is Calcium-dependent

Munguira, I. L. B.

10.1101/771725 — biophysics — Posted on 2019-09-18

1589 iSeqQC: A Tool for Expression-Based Quality Control in RNA Sequencing

Kumar, G.; Ertel, A.; Feldman, G.; Kupper, J.; Fortina, P.

10.1101/768101 — bioinformatics — Posted on 2019-09-18

1590 Identification of spatial compartments in tissue from in situ sequencing data

Partel, G.; Hilscher, M. M.; Milli, G.; Solorzano, L.; Klemm, A. H.; Nilsson, M.; Wählby, C.

10.1101/765842 — neuroscience — Posted on 2019-09-18

1591 Unraveling the Complexity of Amyloid Polymorphism Using Gold Nanoparticles and Cryo-EM

Cendrowska, U.; Silva, P. H. J.; Ait-Bouziad, N.; Müller, M.; Guven, Z. P.; Vieweg, S.; Chiki, A. C.; Radamaker, L.; Thangaraj, S.; Fändrich, M.; Tavanti, F.; Menziani, M. C.; Alexander-Katz, A.; Stellacci, F.; Lashuel, H.

10.1101/754846 — neuroscience — Posted on 2019-09-18

1592 A Krüppel-like factor 1 (KLF1) mutation associated with severe congenital dyserythropoietic anemia alters its DNA-binding specificity

Kulczynska, K.; Bieker, J. J.; Siatecka, M.

10.1101/774158 — molecular biology — Posted on 2019-09-18

1593 Discovery and characterization of a Gram-positive Pel polysaccharide biosynthetic gene cluster

Whitfield, G. B.; Marmont, L. S.; Bundalovic-Torma, C.; Razvi, E.; Roach, E. J.; Khursigara, C. M.; Parkinson, J.; Howell, P. L.

10.1101/768473 — microbiology — Posted on 2019-09-18

1594 Aging-associated alterations in the mammary gland revealed by single-cell RNA sequencing

Li, C. M.-C.; Shapiro, H.; Tsiobikas, C.; Selfors, L.; Chen, H.; Gray, G. K.; Oren, Y.; Pinello, L.; Regev, A.; Brugge, J. S.

10.1101/773408 — cell biology — Posted on 2019-09-18

1595 Time-dynamics of mitochondrial membrane potential reveal an inhibition of ATP synthesis in mitosis

Ho Kang, J.; Katsikis, G.; Stockslager, M. A.; Lim, D.; Yaffe, M. B.; Manalis, S. R.; Miettinen, T. P.

10.1101/772244 — cell biology — Posted on 2019-09-18

1596 Structural organization of the C1a-e-c supercomplex within the ciliary central apparatus

Fu, G.; Zhao, L.; Dymek, E.; Hou, Y.; Song, K.; Phan, N.; Shang, Z.; Smith, E. F.; Witman, G. B.; Nicastro, D.

10.1101/773416 — cell biology — Posted on 2019-09-18

1597 Fluctuation-based Super-Resolution Traction Force Microscopy

Stubb, A.; Laine, R. F.; Guzman, C.; Henriques, R.; Jacquemet, G.; Ivaska, J.

10.1101/772947 — cell biology — Posted on 2019-09-18

1598 A CLN6-CLN8 complex recruits lysosomal enzymes at the ER for Golgi transfer

Bajaj, L.; di Ronza, A.; Zheng, P.; Eblimit, A.; Pal, R.; Sharma, J.; Roman, D.; Collette, J. R.; Sifers, R. N.; Jung, S. Y.; Chen, R.; Schekman, R.; Sardiello, M.

10.1101/773804 — cell biology — Posted on 2019-09-18

1599 Purification of native CCL7 and its functional interaction with selected chemokine receptors

Shukla, A. K.; Dwivedi-Agnihotri, H.; Srivastava, A.; Roy, D.; Baidya, M.; Goncharuk, M.; Dubinnyi, M.; Nadezhdin, K.; Arseniev, A.

10.1101/771618 — biochemistry — Posted on 2019-09-18

1600 Inter-Species Differences in the Response of Sinus Node Cellular Pacemaking to Changes of Extracellular Calcium

Loewe, A.; Lutz, Y.; Nagy, N.; Fabbri, A.; Schweda, C.; Varro, A.; Severi, S.

10.1101/771972 — cell biology — Posted on 2019-09-18

1601 Inhibition of the mitochondrial permeability transition exerts sex-specific stimulatory effect on fracture repair

Shares, B. H.; Sheu, T.-J.; Schilling, K.; Sautchuk, R.; Paine, A.; Beutner, G.; Shum, L. C.; Smith, C. O.; Knapp, E.; Brown, E. B.; Awad, H.; Eliseev, R. A.

10.1101/771691 — biochemistry — Posted on 2019-09-18

1602 DNA-based long-lived reaction-diffusion patterning in a host hydrogel

Urtel, G.; Estevez-Torres, A.; Galas, J.-C.

10.1101/767608 — biochemistry — Posted on 2019-09-18

1603 Spire stimulates nucleation by Cappuccino and binds both ends of actin filaments

Bradley, A. O.; Vizcarra, C. L.; Bailey, H. M.; Quinlan, M. E.

10.1101/773812 — biochemistry — Posted on 2019-09-18

1604 Direct, sensitive and specific detection of individual single- or double-strand DNA breaks by fluorescence microscopy

Kordon, M.; Zarebski, M.; Solarczyk, K.; Ma, H.; Pederson, T.; Dobrucki, J. W.

10.1101/772269 — cell biology — Posted on 2019-09-18

1605 Naturally Occurring Shorter and Tumor-associated Mutant RNF167 Variants Facilitates Lysosomal Exocytosis and Plasma Membrane Resealing

Nair, S. V.; Narendradev, N. D.; Nambiar, R. P.; Kumar, R.; Srinivasula, S. M.

10.1101/772731 — cell biology — Posted on 2019-09-18

1606 Loss of CHCHD2 and CHCHD10 activates OMA1 peptidase to disrupt mitochondrial cristae phenocopying patient mutations in vivo

Liu, Y.-T.; Huang, X.; Nguyen, D.; Dombi, E.; Springer, D. A.; Poulton, J.; Sekine, S.; Narendra, D. P.

10.1101/773135 — cell biology — Posted on 2019-09-18

1607 Systematic cysteine-crosslinking in native membranes establishes the transmembrane architecture in Ire1 clusters

Vaeth, K.; Covino, R.; Reinhard, J.; Hummer, G.; Ernst, R.

10.1101/772772 — biochemistry — Posted on 2019-09-18

1608 The Hrq1 helicase stimulates Pso2 translesion nuclease activity to promote DNA inter-strand crosslink repair

Rogers, C. M.; Lee, C.-Y.; Parkins, S.; Buehler, N. J.; Wenzel, S.; Martinez-Marquez, F.; Takagi, Y.; Myong, S.; Bochman, M. L.

10.1101/773267 — biochemistry — Posted on 2019-09-18

1609 Invariant chain regulates endosomal fusion and maturation through the SNARE Vti1b

Frei, D.; Margiotta, A.; Borg Distefano, M.; Moulefera, M.; Janssen, L.; Thibodeau, J.; Neefjes, J.; Bakke, O.

10.1101/771857 — cell biology — Posted on 2019-09-18

1610 Adaptive landscape flattening allows the design of both enzyme:substrate binding and catalytic power

Opuu, V.; Nigro, G.; Schmitt, E.; Mechulam, Y.; Simonson, T.

10.1101/771824 — biochemistry — Posted on 2019-09-18

1611 Automated Processing and Statistical Analysis of NMR spectra obtained from Arabidopsis thaliana Extracts

Makela, V.; Vaahtera, L.; Helminen, J.; Koskela, H.; Brosche, M.; Kilpelainen, I.; Heikkinen, S.

10.1101/766295 — biochemistry — Posted on 2019-09-18

1612 Future Preventive Gene Therapy of Polygenic Diseases from a Population Genetics Perspective

Oliynyk, R. T.

10.1101/770396 — bioinformatics — Posted on 2019-09-18

1613 Cellular and molecular mechanisms of photoreceptor tuning for prey capture in larval zebrafish

Yoshimatsu, T.; Schroeder, C.; Nevala, N. E.; Berens, P.; Baden, T.

10.1101/744615 — neuroscience — Posted on 2019-09-18

1614 Diverse dynamics of glutamatergic input underlie heterogeneous response patterns of olfactory bulb outputs in vivo

Moran, A. K.; Eiting, T. P.; Wachowiak, M.

10.1101/692574 — neuroscience — Posted on 2019-09-18

1615 Parallel signaling through IRE1α and PERK regulates pancreatic neuroendocrine tumor growth and survival

Moore, P. C.; Qi, J. Y.; Thamsen, M.; Ghosh, R.; Peng, J.; Gliedt, M. J.; Meza-Acevedo, R.; Warren, R. E.; Hiniker, A.; Kim, G. E.; Maly, D. J.; Backes, B. J.; Papa, F. R.; Oakes, S. A.

10.1101/522102 — cancer biology — Posted on 2019-09-18

1616 Food-borne mycotoxin hazards in the Kenyan market-a retrospective study

Kibugu, J. K.; Mburu, D.; Munga, L. K.; Kurgat, R.; Mukasa, B.; Lusweti, F. N.; Grace, D.; Lindahl, J.

10.1101/773747 — scientific communication and education — Posted on 2019-09-17

1617 A framework for testing different imputation methods for tabular datasets

Kossen, T.; Livne, M.; Madai, V. I.; Galinovic, I.; Frey, D.; Fiebach, J. B.

10.1101/773762 — neuroscience — Posted on 2019-09-17

1618 Neuroprotective effects of exogenous erythropoietin in Wistar rats by downregulating apoptotic factors to attenuate N-methyl-D-aspartate-mediated retinal ganglion cells death

Cheng, W.-S.; Lin, I.-H.; Feng, K. M.; Chang, Z.-Y.; Huang, y. c.; Lu, D.-W.

10.1101/773754 — pharmacology and toxicology — Posted on 2019-09-17

1619 The SHAPE of logistic growth shows that timing does matter

Dench, J.

10.1101/392944 — bioinformatics — Posted on 2019-09-17

1620 Discovery of a small molecule having both potent anti-fibrotic and anti-inflammatory capabilities

Kim, H.-S.; Meang, M. K.; Ham, M.-J.; Seong, B.; Kim, I.-H.; Youn, B.-S.

10.1101/770404 — pharmacology and toxicology — Posted on 2019-09-17

1621 Hybridizing salamanders experience accelerated diversification

Patton, A.; Margres, M. J.; Epstein, B.; Eastman, J.; Harmon, L. J.; Storfer, A.

10.1101/760264 — evolutionary biology — Posted on 2019-09-17

1622 DolphinNext: A graphical user interface for creating Nextflow pipelines

Yukselen, O.; Turkyilmaz, O.; Ozturk, A.; Garber, M.; Kucukural, A.

10.1101/689539 — bioinformatics — Posted on 2019-09-17

1623 APPLES: Scalable Distance-based Phylogenetic Placement with or without Alignments

Balaban, M.; Sarmashghi, S.; Mirarab, S.

10.1101/475566 — bioinformatics — Posted on 2019-09-17

1624 The Drosophila Y chromosome affects heterochromatin integrity genome-wide

Brown, E.; Nguyen, A. H.; Bachtrog, D.

10.1101/156000 — genomics — Posted on 2019-09-17

1625 Early metabolic features of genetic liability to type 2 diabetes: cohort study with repeated metabolomics across early life

Bell, J. A.; Bull, C. J.; Gunter, M. J.; Carslake, D.; Davey Smith, G.; Timpson, N. J.; Vincent, E. E.

10.1101/767756 — genetics — Posted on 2019-09-17

1626 ATP7B Variant c.1934T>G p.Met645Arg Causes Wilson Disease by Promoting Exon 6 Skipping

Merico, D.; Spickett, C.; O'Hara, M.; Kakaradov, B.; Deshwar, A.; Fradkin, P.; Gandhi, S.; Gao, J.; Grant, S.; Kron, K.; Schmitges, F. W.; Shalev, Z.; Sun, M.; Verby, M.; Cahill, M.; Dowling, J. J.; Fransson, J.; Wienholds, E.; Frey, B. J.

10.1101/693572 — genetics — Posted on 2019-09-17

1627 Aggregation of CAT tails blocks their degradation and causes proteotoxicity in S. cerevisiae

Sitron, C. S.; Park, J. H.; Giafaglione, J. M.; Brandman, O.

10.1101/687319 — cell biology — Posted on 2019-09-17

1628 Dynamic design: manipulation of millisecond timescale motions on the energy landscape of Cyclophilin A

Juarez-Jimenez, J.; Gupta, A. A.; Karunanithy, G.; Mey, A.; Georgiou, C.; Ioannidis, C.; De Simone, A.; Barlow, P. N.; Hulme, A. N.; Walkinshaw, M. D.; Baldwin, A. J.; Michel, J.

10.1101/490987 — biophysics — Posted on 2019-09-17

1629 Cognitive and non-cognitive outcomes associated with student engagement in a novel brain mapping and connectomics course-based undergraduate research experience

D'Arcy, C. E.; Martinez, A.; Khan, A. M.; Olimpo, J. T.

10.1101/768465 — scientific communication and education — Posted on 2019-09-17

1630 Pain Stickiness in Complex Regional Pain Syndrome: A role for the Nucleus Accumbens

Youssef, A.; Peng, K.; Kim, P. K.; Lebel, A.; Sethna, N.; Kronman, C.; Zurakowski, D.; Borsook, D.; Simons, L. E.

10.1101/769802 — neuroscience — Posted on 2019-09-17

1631 Discovery of several thousand highly diverse circular DNA viruses

Tisza, M. J.; Pastrana, D. V.; Welch, N. L.; Stewart, B.; Peretti, A.; Starrett, G. J.; Pang, Y.-Y. S.; Krishnamurthy, S. R.; Pesavento, P. A.; McDermott, D. H.; Murphy, P. M.; Whited, J. L.; Miller, B.; Brenchley, J. M.; Rosshart, S. P.; Rehermann, B.; Doorbar, J.; Ta'ala, B. A.; Pletnikova, O.; Troncoso, J.; Bolduc, B.; Resnick, S. M.; Sullivan, M. B.; Varsani, A.; Segall, A. M.; Buck, C. B.

10.1101/555375 — microbiology — Posted on 2019-09-17

1632 Measuring genome sizes using read-depth, k-mers, and flow cytometry: methodological comparisons in beetles (Coleoptera)

Pflug, J.; Johnston, J. S.; Holmes, V. R.; Burrus, C.; Maddison, D. R.

10.1101/761304 — genomics — Posted on 2019-09-17

1633 Analysis of leaf microbiome composition of near-isogenic maize lines differing in broad-spectrum disease resistance

Wagner, M. R.; Busby, P. E.; Balint-Kurti, P. J.

10.1101/647446 — plant biology — Posted on 2019-09-17

1634 Dietary Induction and Modulation of Ferroptosis in Caenorhabditis elegans

Perez, M. A.; Magtanong, L.; Dixon, S. J.; Watts, J. L.

10.1101/772079 — cell biology — Posted on 2019-09-17

1635 Straightforward clustering of single-cell RNA-Seq data with t-SNE and DBSCAN

Wagner, F.

10.1101/770388 — bioinformatics — Posted on 2019-09-17

1636 Induction of Activity Synchronization among Primed Hippocampal Neurons out of Random Dynamics is Key for Trace Memory Formation and Retrieval

Zhou, Y.; Qiu, L.; Wang, H.; Chen, X.

10.1101/757229 — neuroscience — Posted on 2019-09-17

1637 Integrated evolutionary and structural analysis reveals xenobiotics and pathogens as the major drivers of mammalian adaptation

Slodkowicz, G.; Goldman, N.

10.1101/762690 — evolutionary biology — Posted on 2019-09-17

1638 Solution structure and assembly of β-amylase 2 from Arabidopsis thaliana

Chandrasekharan, N. P.; Ravenburg, C. M.; Roy, I. R.; Monroe, J. D.; Berndsen, C. E.

10.1101/751602 — biochemistry — Posted on 2019-09-17

1639 Machine-learning classification suggests that many alphaproteobacterial prophages may instead be gene transfer agents

Kogay, R.; Neely, T. B.; Birnbaum, D. P.; Hankel, C. R.; Shakya, M.; Zhaxybayeva, O.

10.1101/697243 — genomics — Posted on 2019-09-17

1640 Domain-invariant features for mechanism of action prediction in a multi-cell-line drug screen

Boyd, J. C.; Pinheiro, A.; Del Nery, E.; Reyal, F.; Walter, T.

10.1101/656025 — bioinformatics — Posted on 2019-09-17

1641 Precise timing is ubiquitous, consistent, and coordinated across a comprehensive, spike-resolved flight motor program

Putney, J.; Conn, R.; Sponberg, S.

10.1101/602961 — neuroscience — Posted on 2019-09-17

1642 Reductive TCA cycle enzymes and reductive amino acid synthesis pathways contribute to electron balance in a Rhodospirillum rubrum Calvin cycle mutant

McCully, A. L.; Onyeziri, M. C.; LaSarre, B.; Gliessman, J. R.; McKinlay, J. B.

10.1101/614065 — microbiology — Posted on 2019-09-17

1643 Sufficiency analysis of estrogen responsive enhancers using synthetic activators

Ginley-Hidinger, M.; Carleton, J. B.; Rodriguez, A. C.; Berrett, K. C.; Gertz, J.

10.1101/479709 — systems biology — Posted on 2019-09-17

1644 An optimized protocol for iDISCO+ rat brain clearing, imaging, and analysis

Branch, A.; Tward, D.; Vogelstein, J. T.; Wu, Z.; Gallagher, M.

10.1101/639674 — neuroscience — Posted on 2019-09-17

1645 Habitat loss does not always entail negative genetic consequences

Carvalho, C. d. S.; Lanes, E. C.; Silva, A. R.; Caldeira, C. F.; Carvalho-Filho, N.; Gastauer, M.; Imperatriz-Fonseca, V. L.; Nascimento, W.; Oliveira, G.; Siqueira, J. O.; Viana, P. L.; Jaffe, R.

10.1101/528430 — ecology — Posted on 2019-09-17

1646 Region-specific regulation of stem cell-driven regeneration in tapeworms

Rozario, T.; Quinn, E. B.; Wang, J.; Davis, R. E.; Newmark, P. A.

10.1101/495234 — developmental biology — Posted on 2019-09-17

1647 Stress-induced neuron remodeling reveals differential interplay between neurexin and environmental factors

Hart, M. P.

10.1101/462796 — neuroscience — Posted on 2019-09-17

1648 Subcellular orchestration of alpha-synuclein variants in Parkinson’s disease brains revealed by 3D multicolor STED microscopy

Moors, T. E.; Maat, C. A.; Niedieker, D.; Mona, D.; Petersen, D.; Timmermans-Huisman, E.; Kole, J.; El-Mashtoly, S. F.; Spycher, L.; Zago, W.; Barbour, R.; Mundigl, O.; Kaluza, K.; Huber, S.; Hug, M. N.; Kremer, T.; Ritter, M.; Dziadek, S.; Geurts, J. J. G.; Gerwert, K.; Britschgi, M.; van de Berg, W. D. J.

10.1101/470476 — neuroscience — Posted on 2019-09-17

1649 Regulation of expression site and generalizability of experience-dependent plasticity in visual cortex

Lantz, C. L.; Murase, S.; Quinlan, E. M.

10.1101/773275 — neuroscience — Posted on 2019-09-17

1650 Precision calcium imaging of dense neural populations via a cell body-targeted calcium indicator

Shemesh, O. A.; Linghu, C.; Piatkevich, K. D.; Goodwin, D.; Gritton, H.; Romano, M. F.; Siciliano, C. A.; Gao, R.; Yu, C.-C.; Tseng, H.-a.; Bensussen, S.; Narayan, S.; Yang, C.-T.; Freifeld, L.; Gupta, I.; Noamany, H.; Pak, N.; Yoon, Y.-G.; Ullmann, J. F. P.; Guner-Ataman, B.; Sheinkopf, Z. R.; Park, W. M.; Asano, S.; Keating, A.; Trimmer, J.; Reimer, J.; Tolias, A.; Tye, K. M.; Han, X.; Ahrens, M. B.; Boyden, E. S.

10.1101/773069 — neuroscience — Posted on 2019-09-17

1651 17α Estradiol promotes plasticity of spared inputs in the adult amblyopic visual cortex

Sengupta, D. C.; Lantz, C. L.; Rumi, M. A. K.; Quinlan, E. M.

10.1101/773374 — neuroscience — Posted on 2019-09-17

1652 Transcriptional and Spatial Resolution of Cell Types in the Mammalian Habenula

Hashikawa, Y.; Hashikawa, K.; Basiri, M. L.; Liu, Y.; Johnston, N. L.; Ahmad, O. R.; Stuber, G. D.

10.1101/772376 — neuroscience — Posted on 2019-09-17

1653 A generalized observation confirmation model to account for false positive error in species detection-nondetection data

Clare, J.; Zuckerberg, B.; Townsend, P. A.

10.1101/422527 — ecology — Posted on 2019-09-17

1654 A functionally conserved mechanism of modulation via a vestibule site in pentameric ligand-gated ion channels

Brams, M.; Govaerts, C.; Kambara, K.; Price, K. L.; Spurny, R.; Gharpure, A.; Pardon, E.; Evans, G. L.; Bertrand, D.; Lummis, S.; Hibbs, R.; Steyaert, J.; Ulens, C.

10.1101/770719 — neuroscience — Posted on 2019-09-17

1655 Genome-wide changes in genetic diversity in a population of Myotis lucifugus affected by white-nose syndrome

Lilley, T.; Wilson, I.; Field, K. A.; Reeder, D. M.; Turner, G. G.; Kurta, A.; Blomberg, A. S.; Hoff, S.; Herzog, C.; Paterson, S.

10.1101/764647 — evolutionary biology — Posted on 2019-09-17

1656 Integration of genomic variation and phenotypic data using HmtPhenome

Preste, R.; Attimonelli, M.

10.1101/660282 — bioinformatics — Posted on 2019-09-17

1657 In-vitro and in-vivo Characterization of a Multi-Stage Enzyme-Responsive Nanoparticle-in-Microgel Pulmonary Drug Delivery System

Mejias, J. C.; Roy, K.

10.1101/650911 — bioengineering — Posted on 2019-09-17

1658 Deep Neural Networks and Kernel Regression Achieve Comparable Accuracies for Functional Connectivity Prediction of Behavior and Demographics

He, T.; Kong, R.; Holmes, A.; Nguyen, M.; Sabuncu, M.; Eickhoff, S. B.; Bzdok, D.; Feng, J.; Yeo, B. T. T.

10.1101/473603 — neuroscience — Posted on 2019-09-17

1659 Core architecture of a bacterial type II secretion system

Chernyatina, A. A.; Low, H. H.

10.1101/397794 — microbiology — Posted on 2019-09-17

1660 Intrinsically disordered nuclear pore proteins show ideal-polymer morphologies and dynamics

Davis, L. K.; Ford, I. J.; Saric, A.; Hoogenboom, B.

10.1101/571687 — biophysics — Posted on 2019-09-17

1661 mTORC1 IN THE ORBITOFRONTAL CORTEX PROMOTES HABITUAL ALCOHOL SEEKING

Morisot, N.; Phamluong, K.; Ehinger, Y.; Berger, A.; Moffat, J.; Ron, D.

10.1101/564310 — neuroscience — Posted on 2019-09-17

1662 Isolates from ancient permafrost help to elucidate species boundaries in Acanthamoeba castellanii complex (Amoebozoa: Discosea)

Malavin, S. A.; Shmakova, L. A.

10.1101/755348 — evolutionary biology — Posted on 2019-09-17

1663 Integrative genomic analysis of early neurogenesis reveals a temporal genetic program for differentiation and specification of preplate and Cajal-Retzius neurons

Li, J.; Sun, L.; Peng, X.-L.; Yu, X.-M.; Qi, S.-J.; Lu, Z. J.; Han, J.-D. J.; Shen, Q.

10.1101/331900 — neuroscience — Posted on 2019-09-17

1664 Drug susceptibility testing of Mycobacterium simiae: An emerging pathogen in Iran

Nasiri, M. J.; Amini, S.; Nikpor, Z.; Arefzadeh, S.; Mousavi, S. M. J.

10.1101/549428 — microbiology — Posted on 2019-09-17

1665 Phylogenetic, sequence and structural analysis of Insulin superfamily proteins reveals an indelible link between evolution and structure-function relationship

S, S.; Kundapura, S.; Dey, D.; Kulal, A.; Ramagopal, U. A.

10.1101/769497 — evolutionary biology — Posted on 2019-09-17

1666 Arginine-enriched mixed-charge domains provide cohesion for nuclear speckle condensation

Greig, J. A.; Nguyen, T. A.; Lee, M.; Holehouse, A. S.; Posey, A. E.; Pappu, R. V.; Jedd, G. J.

10.1101/771592 — cell biology — Posted on 2019-09-16

1667 Juvenile hormone interacts with multiple factors to modulate aggression and dominance in groups of orphan bumble bee (Bombus terrestris) workers

Pandey, A.; Motro, U.; Bloch, G.

10.1101/626382 — animal behavior and cognition — Posted on 2019-09-17

1668 A novel antibody targeting ICOS increases intratumoural cytotoxic to regulatory T cell ratio and induces tumour regression.

Sainson, R. C. A.; Thotakura, A. K.; Kosmac, M.; Borhis, G.; Parveen, N.; Kimber, R.; Carvalho, J.; Henderson, S.; Pryke, K.; Okell, T.; O'Leary, S.; Ball, S.; Gamand, L.; Taggart, E.; Pring, E.; Ali, H.; Craig, H.; Wong, V. W. Y.; Liang, Q.; Rowlands, R. J.; Lecointre, M.; Campbell, J.; Kirby, I.; Melvin, D.; Germaschewski, V.; Oelmann, E.; Quaratino, S.; McCourt, M.

10.1101/771493 — cancer biology — Posted on 2019-09-16

1669 Abuse among elderly living in old age homes of Pokhara Lekhnath Metropolitan City:A cross sectional study

Adhikari Baral, M.; Baral, P.; K.C, B.

10.1101/771311 — scientific communication and education — Posted on 2019-09-16

1670 Sexual dichromatism in the neotropical genus Mannophryne (Anura: Aromobatidae)

Greener, M. S.; Hutton, E.; Lam, C. Y.; Pollock, C.; Wilson, A.; Nokhbatolfoghahai, M.; Jowers, M. J.; Downie, J. R.

10.1101/771287 — zoology — Posted on 2019-09-16

1671 Evaluation of rice wild relatives as a source of traits for adaptation to iron toxicity and enhanced grain quality

Bierschenk, B.; Tagele, M.; Ali, B.; Ashrafuzzaman, M.; Wu, L.; Becker, M.; Frei, M.

10.1101/771352 — plant biology — Posted on 2019-09-16

1672 P16 methylation increases the sensitivity of cancer cells to the CDK4/6 inhibitor palbociclib

Deng, D.; Li, P.; Zhang, X.; Gu, L.; Zhou, J.

10.1101/771337 — pharmacology and toxicology — Posted on 2019-09-16

1673 Seminal quality and global proteomic analysis of spermatozoa from captive Amazon squirrel monkeys (Saimiri collinsi Osgood, 1916) during the dry and rainy seasons

Leao, D.; Domingues, S.; Sousa, P.; Sampaio, W.; Vasconcelos, F.; Moura, A.; Regiane, S.; Skaugen, M.; Oskam, I.

10.1101/771295 — cell biology — Posted on 2019-09-16

1674 The MEK1/2 pathway as a therapeutic target in high-grade serous ovarian carcinoma

Chesnokov, M.; Khan, I.; Park, Y.; Ezel, J.; Mehta, G.; Yousif, A.; Hong, L.; Buckanovich, R. J.; Chefetz Menaker, I.

10.1101/772061 — cancer biology — Posted on 2019-09-16

1675 %svy_freqs: A generic SAS macro for cross-tabulation between a factor and a by-group variable given a third variable and creating publication-quality tables using data from complex surveys

Muthusi, J.; Mwalili, S.; Young, P.

10.1101/771303 — bioinformatics — Posted on 2019-09-16

1676 Functional interactions between post-translationally modified amino acids of methyl-coenzyme M reductase in Methanosarcina acetivorans

Nayak, D. D.; Liu, A.; Agrawal, N.; Rodriguez-Carerro, R.; Dong, S.-H.; Mitchell, D. A.; Nair, S. K.; Metcalf, W. W.

10.1101/771238 — microbiology — Posted on 2019-09-16

1677 Modeling Cancer Genomic Data in Yeast Reveals Selection Against ATM Function During Tumorigenesis

Hohl, M.; Mojumdar, A.; Hailemariam, S.; Kuryavyi, V.; Ghisays, F.; Sorenson, K.; Chang, M.; Taylor, B. S.; Patel, D. J.; Burgers, P. M.; Cobb, J. A.; Petrini, J. H. J.

10.1101/771253 — genetics — Posted on 2019-09-16

1678 Multi-Region Brain Stimulation Optimization Using Transcranial Direct Current Stimulation

Xu, Z.; Sun, J.; Chen, Y.; Yu, Y.; Yang, X.; Liu, P.; Chen, B.; Qin, W.

10.1101/771345 — bioengineering — Posted on 2019-09-16

1679 Avoiding pitfalls: Trace conditioning and rapid aversive learning during route navigation in desert ants

Wystrach, A.; Buehlmann, C.; Schwarz, S.; Cheng, K.; Graham, P.

10.1101/771204 — animal behavior and cognition — Posted on 2019-09-16

1680 Distribution of Human T-Lymphotropic Virus (HTLV) and Hepatitis C Co-infection in Bahia, Brazil,

Pereira, F. M.; Almeida, M. d. C. C. d.; Santos, F. L. N.; Carreiro, R. P.; Galvao-Castro, B.; Grassi, M. F. R.

10.1101/771360 — microbiology — Posted on 2019-09-16

1681 Patterns of smallpox mortality in London, England, over three centuries

Earn, D. J. D.; Krylova, O.

10.1101/771220 — ecology — Posted on 2019-09-16

1682 Predicting suitability of regions for Zika outbreaks with zero-inflated models trained using climate data

Roth, S. M.; Teboh-Ewungkem, M. I.; Li, M.

10.1101/771279 — ecology — Posted on 2019-09-16

1683 Molecular mechanisms of fentanyl mediated β-arrestin biased signaling

de Waal, P. W.; Shi, J.; You, E.; Wang, X.; Melcher, K.; Jiang, Y.; Xu, H. E.; Dickson, B.

10.1101/771246 — biophysics — Posted on 2019-09-16

1684 Verbal thinking in rhythm: motor-to-sensory transformation network mediates imagined singing

Li, Y.; Luo, H.; Tian, X.

10.1101/771196 — neuroscience — Posted on 2019-09-16

1685 Quantitative proteomics reveals remodeling of protein repertoire across life phases of Daphnia pulex

Peshkin, L.; Boukhali, M.; Haas, W.; Kirschner, M. W.; Yampolsky, L. Y.

10.1101/772442 — systems biology — Posted on 2019-09-16

1686 Discovery of a small molecule having both potent anti-fibrotic and anti-inflammatory capabilities

Kim, H.-S.; Meang, M. K.; Ham, M.-J.; Seong, B.; Kim, I.-H.; Youn, B.-S.

10.1101/770404 — pharmacology and toxicology — Posted on 2019-09-16

1687 Origin of cooperativity in the activation of dimeric transcription factors

Welch, M.; Brasen, J. C.; Workman, C. T.; Sams, T.

10.1101/769661 — molecular biology — Posted on 2019-09-16

1688 CytoMAP: a spatial analysis toolbox reveals features of myeloid cell organization in lymphoid tissues

Stoltzfus, C. R.; Filipek, J.; Gern, B. H.; Olin, B. E.; Leal, J. M.; Lyons-Cohen, M. R.; Huang, J.; Paz-Stoltzfus, C. L.; Plumlee, C. R.; Pöschinger, T.; Urdahl, K. B.; Perro, M.; Gerner, M. Y.

10.1101/769877 — immunology — Posted on 2019-09-16

1689 Time-dependent modulation of spinal excitability during action observation in the macaque monkey

Jerjian, S. J.; Lemon, R. N.; Kraskov, A.

10.1101/768804 — animal behavior and cognition — Posted on 2019-09-16

1690 Processing of a single ribonucleotide embedded into DNA by human nucleotide excision repair and DNA polymerase η

Sassa, A.; Tada, H.; Takeishi, A.; Harada, K.; Suzuki, M.; Tsuda, M.; Sasanuma, H.; Takeda, S.; Sugasawa, K.; Yasui, M.; Honma, M.; Ura, K.

10.1101/699587 — genetics — Posted on 2019-09-16

1691 Neural hierarchical models of ecological populations

Joseph, M. B.

10.1101/759944 — ecology — Posted on 2019-09-16

1692 Consequences Of NMDA Receptor Deficiency Can Be Rescued In The Adult Brain

Mielnik, C. A.; Binko, M. A.; Funk, A. J.; Johansson, E. M.; Intson, K.; Sivananthan, N.; Chen, Y.; Islam, R.; Milenkovic, M.; Horsfall, W.; Ross, R. A.; Tripathy, S.; Groc, L.; Salahpour, A.; McCullumsmith, R. E.; Lambe, E. K.; Ramsey, A. J.

10.1101/140343 — neuroscience — Posted on 2019-09-16

1693 Enhancement of alcohol aversion by the nicotinic acetylcholine receptor drug sazetidine-A

Touchette, J. C.; Moen, J. K.; Robinson, J. M.; Lee, A. M.

10.1101/723916 — neuroscience — Posted on 2019-09-16

1694 Pupil-associated states modulate excitability but not stimulus selectivity in primary auditory cortex

Schwartz, Z. P.; Buran, B. N.; David, S. V.

10.1101/619619 — molecular biology — Posted on 2019-09-16

1695 Investigating Transfusion-Related Sepsis using Culture-Independent Metagenomic Sequencing

Crawford, E. D.; Kamm, J.; Miller, S.; Li, L.; Caldera, S.; Lyden, A. D.; Yokoe, D.; Nichols, A.; Tran, N. K.; Barnhard, S.; Conner, P. M.; Nambiar, A.; Zinter, M. S.; Moayeri, M.; Hayakawa Serpa, P.; Prince, B. C.; Quan, J.; Sit, R.; Tan, M.; Phelps, M.; DeRisi, J. S.; Tato, C. M.; Langelier, C.

10.1101/653337 — microbiology — Posted on 2019-09-16

1696 Integrating genome-wide association and transcriptome predicted model identify novel target genes with osteoporosis

Yin, P.; Zhu, M.

10.1101/771543 — genetics — Posted on 2019-09-16

1697 Adaptation and latitudinal gradients in species interactions: nest predation in birds

Freeman, B.; Scholer, M.; Boehm, M.; Heavyside, J.; Schluter, D.

10.1101/552380 — evolutionary biology — Posted on 2019-09-16

1698 Nuclear gene proximity and protein interactions shape transcript covariances in mammalian single cells

Tarbier, M.; Mackowiak, S. D.; Frade, J.; Catuara-Solarz, S.; Biryukova, I.; Gelali, E.; Barcena Menendez, D.; Zapata, L.; Ossowski, S.; Bienko, M.; Gallant, C. J.; Friedländer, M. R.

10.1101/771402 — systems biology — Posted on 2019-09-16

1699 Chromosome-scale de novo assembly and phasing of a Chinese indigenous pig genome

Yang, Y.; Lian, J.; Xie, B.; Chen, M.; Niu, Y.; Li, Q.; Liu, Y.; Yi, G.; Fan, X.; Tang, Y.; Li, J.; Liachko, I.; Sullivan, S. T.; Nelson, B.; Zuo, E.; Tang, Z.

10.1101/770958 — genomics — Posted on 2019-09-16

1700 Small terrestrial mammal distributions in Simien Mountains National Park, Ethiopia: A reassessment after 88 years

Craig, E. W.; Stanley, W. T.; Kerbis Peterhans, J. C.; Bryja, J.; Meheretu, Y.

10.1101/771428 — ecology — Posted on 2019-09-16

1701 Non-Coding and Loss-of-Function Coding Variants in TET2 are Associated with Multiple Neurodegenerative Diseases

Cochran, J. N.; Geier, E. G.; Bonham, L. W.; Newberry, J. S.; Amaral, M. D.; Thompson, M. L.; Lasseigne, B. N.; Karydas, A. M.; Roberson, E. D.; Cooper, G. M.; Rabinovici, G. D.; Miller, B. L.; Myers, R. M.; Yokoyama, J. S.

10.1101/759621 — neuroscience — Posted on 2019-09-16

1702 Accuracy of whole-genome sequence imputation using hybrid peeling in large pedigreed livestock populations

Ros-Freixedes, R.; Whalen, A.; Chen, C.-Y.; Gorjanc, G.; Herring, W. O.; Mileham, A. J.; Hickey, J. M.

10.1101/771576 — genomics — Posted on 2019-09-16

1703 A unifying mechanistic model of bacterial transcription with three interconnected pause states and non-diffusive backtrack recovery

Janissen, R.; Eslami Mossallam, B.; Artsimovitch, I.; Depken, M.; Dekker, N. H.

10.1101/762468 — biophysics — Posted on 2019-09-16

1704 A reversible KO model reveals therapeutic 1 potentials of defective Tregs

chi, t.; li, y.

10.1101/770347 — immunology — Posted on 2019-09-16

1705 A natural variant of the sole pyruvate kinase of fission yeast lowers glycolytic flux triggering increased respiration and oxidative-stress resistance but decreased growth

Kamrad, S.; Grossbach, J.; Rodriguez-Lopez, M.; Townsend, S.; Mulleder, M.; Cappelletti, V.; Stojanovski, G.; Picotti, P.; Beyer, A.; Ralser, M.; Bahler, J.

10.1101/770768 — genetics — Posted on 2019-09-16

1706 Hsa_circ_0001947 suppresses acute myeloid leukemia progression by sponging hsa-miR-329-5p and regulating CREBRF expression

Han, F.; Zhong, C.; Li, W.; Wang, R.; Zhang, C.; Yang, X.; Ji, C.; Ma, D.

10.1101/770420 — cancer biology — Posted on 2019-09-16

1707 Seeing cells smell: Dynamic optical measurements of Ca2+ and cAMP signaling from Olfactory Receptors transiently expressed in HEK293TN cells

Pietraszewska-Bogiel, A.; van Weeren, L.; Goedhart, J.

10.1101/771261 — molecular biology — Posted on 2019-09-16

1708 JunB controls tissue-specific effector programs in regulatory T cells

Wheaton, J. D.; Ciofani, M.

10.1101/772194 — immunology — Posted on 2019-09-16

1709 DEVELOPMENT OF CAR-T CELL THERAPY FOR B-ALL USING A POINT-OF-CARE APPROACH

Abdo, L. d. M.; Barros, L. R. C.; Viegas, M. S.; Marques, L. V. C.; Ferreira, P. d. S.; Chicaybam, L.; Bonamino, M. H.

10.1101/770297 — immunology — Posted on 2019-09-16

1710 Increased cell size, structural complexity and migration of cancer cells acquiring fibroblast organelles by cell-projection pumping

Zoellner, H.; Chami, B.; Kelly, E.; Moore, M. A.

10.1101/770693 — cancer biology — Posted on 2019-09-16

1711 Cell cycle regulation of mitochondrial protein import revealed by genome-scale pooled bimolecular fluorescence complementation screening

Blakely, K.; Mero, P.; Arnold, R.; Saleem, A.; Misquitta, C.; Kasimer, D.; Kumar, S.; Uetrecht, A.; Brown, K.; Datti, A.; Hood, D.; Kim, P.; Moffat, J.

10.1101/770669 — systems biology — Posted on 2019-09-16

1712 A new kinetic method for measuring agonist efficacy and ligand bias using high resolution biosensors and a kinetic data analysis framework

Hoare, S. R. J.; Tewson, P. H.; Quinn, A. M.; Hughes, T. E.

10.1101/772293 — pharmacology and toxicology — Posted on 2019-09-16

1713 Dendritic GABAB receptors control nonlinear information transfer along the dendro-somatic axis in layer 5 pyramidal neurons

Schulz, J. M.; Larkum, M. E.

10.1101/762625 — neuroscience — Posted on 2019-09-16

1714 Annotation-Informed Causal Mixture Modeling (AI-MiXeR) reveals phenotype-specific differences in polygenicity and effect size distribution across functional annotation categories

Shadrin, A. A.; Frei, O.; Smeland, O. B.; Bettella, F.; O`Connell, K. S.; Gani, O.; Bahrami, S.; Uggen, T. K. E.; Djurovic, S.; Holland, D.; Andreassen, O. A.; Dale, A. M.

10.1101/772202 — genetics — Posted on 2019-09-16

1715 Coordinate Enhancer Reprogramming by GATA3 and AP1 Promotes Phenotypic Plasticity to Achieve Breast Cancer Endocrine Resistance

Bi, M.; Zhang, Z.; Wang, H.; Xue, P.; Hernandez, K.; Fu, X.; De angelis, C.; Gao, Z.; Ruan, J.; Jin, V.; Wang, Q.; Marangoni, E.; Huang, T. H.-M.; Chen, L.; Glass, C. K.; Li, W.; Schiff, R.; Liu, Z.

10.1101/767871 — cancer biology — Posted on 2019-09-16

1716 The occasional perils of reflection (across the midline; in geometric morphometrics)

Katz, D. C.

10.1101/770677 — zoology — Posted on 2019-09-16

1717 B-SOiD: An Open Source Unsupervised Algorithm for Discovery of Spontaneous Behaviors

Hsu, A. I.; Yttri, E. A.

10.1101/770271 — neuroscience — Posted on 2019-09-16

1718 The impact of Relative Language Distance on Bilingual Language Control - a functional imaging study

Ramanujan, K.

10.1101/771212 — neuroscience — Posted on 2019-09-16

1719 Motor behaviour selectively inhibits hair cells activated by forward motion in the lateral line of Zebrafish

Pichler, P.; Lagnado, L.

10.1101/772129 — neuroscience — Posted on 2019-09-16

1720 Temporal complexity of fMRI is reproducible and correlates with higher order cognition

Omidvarnia, A.; Zalesky, A.; Van De Ville, D.; Jackson, G.; Pedersen, M.

10.1101/770826 — neuroscience — Posted on 2019-09-16

1721 MreC and MreD balance the interaction between the elongasome proteins PBP2 and RodA

Liu, X.; Biboy, J.; Vollmer, W.; den Blaauwen, T.

10.1101/769984 — microbiology — Posted on 2019-09-16

1722 Multi-omics data analysis implicating epigenetic inheritance in evolution and disease

Sharma, A.

10.1101/770099 — genomics — Posted on 2019-09-16

1723 Microtubule binding of the kinesin-4 KIF7 and its regulation by autoinhibition

Blasius, T. L.; Yue, Y.; Verhey, K. J.

10.1101/772327 — cell biology — Posted on 2019-09-16

1724 centroFlye: Assembling Centromeres with Long Error-Prone Reads

Bzikadze, A. V.; Pevzner, P. A.

10.1101/772103 — bioinformatics — Posted on 2019-09-16

1725 Control of septum thickness by a large protein ring

Wenzel, M.; Celik Gulsoy, I.; Gao, Y.; Willemse, J.; van Rosmalen, M. G. M.; wuite, G.; Roos, W.; Hamoen, L. W.

10.1101/771139 — microbiology — Posted on 2019-09-16

1726 Improved read/write cost tradeoff in DNA-based data storage using LDPC codes

Chandak, S.; Tatwawadi, K.; Lau, B.; Mardia, J.; Kubit, M.; Neu, J.; Griffin, P.; Wootters, M.; Weissman, T.; Ji, H.

10.1101/770032 — bioengineering — Posted on 2019-09-16

1727 Non-enzymatic primer extension with strand displacement

Zhou, L.; Kim, S. C.; Ho, K. H.; O'Flaherty, D. K.; Giurgiu, C.; Wright, T. H.; Szostak, J. W.

10.1101/770578 — biochemistry — Posted on 2019-09-16

1728 Multiple-site diversification of regulatory sequences enables inter-species operability of genetic devices

Hueso, A.; Nyerges, A.; Pal, C.; Calles, B.; de Lorenzo, V.

10.1101/771782 — synthetic biology — Posted on 2019-09-16

1729 Exploring the Links between Specific Depression Symptoms and Brain Structure: A Network Study

Hilland, E.; Landro, N. I.; Kraft, B.; Tamnes, C. K.; Fried, E. I.; Maglanoc, L. A.; Jonassen, R.

10.1101/762609 — neuroscience — Posted on 2019-09-16

1730 A20 is an immune tolerance factor that can determine islet transplantoutcomes.

Zammit, N. W.; Walters, S. N.; Seeberger, K.; Korbutt, G. S.; Grey, S. T.

10.1101/770834 — immunology — Posted on 2019-09-16

1731 CytoMAP: a spatial analysis toolbox reveals features of myeloid cell organization in lymphoid tissues

Stoltzfus, C. R.; Filipek, J.; Gern, B. H.; Olin, B. E.; Leal, J. M.; Lyons-Cohen, M. R.; Huang, J.; Paz-Stoltzfus, C. L.; Plumlee, C. R.; Pöschinger, T.; Urdahl, K. B.; Gerner, M. Y.

10.1101/769877 — immunology — Posted on 2019-09-16

1732 Gene-diet interactions: dietary rescue of metabolic defects in spen-depleted Drosophila

Reis, T.; Gillette, C. M.; Hazegh, K. E.; Nemkov, T.; Stefanoni, D.; D'Alessandro, A.; Taliaferro, J. M.

10.1101/770818 — genetics — Posted on 2019-09-16

1733 A primitive type of renin-expressing lymphocyte protects the organism against infections

Belyea, B. C.; Santiago, A. E.; Vasconez, W. A.; Nagalakshmi, V. K.; Mehalic, T. C.; Sequeira-Lopez, M. L. L.; Gomez, R. A.

10.1101/770511 — developmental biology — Posted on 2019-09-16

1734 Effect of Changing Heart Rate on the Ocular Pulse and Dynamic Biomechanical Behavior of the Optic Nerve Head

Jin, Y.; Wang, X.; Irnadiastputri, S. F. R.; Mohan, R. E. E.; Aung, T.; Perera, S. A.; Boote, C.; Jonas, J. B.; Schmetterer, L.; Girard, M. J. A.

10.1101/770917 — bioengineering — Posted on 2019-09-16

1735 Effective CRISPRa-Mediated Control of Gene Expression in Bacteria Must Overcome Strict Target Site Requirements

Fontana, J.; Dong, C.; Kiattisewee, C.; Chavali, V. P.; Tickman, B. I.; Carothers, J. M.; Zalatan, J. G.

10.1101/770891 — synthetic biology — Posted on 2019-09-16

1736 Performance of Turquoise killifish, model organism in aging, on commercial pelleted diet: a step towards husbandry standardization

Zak, J.; Dykova, I.; Reichard, M.

10.1101/770479 — physiology — Posted on 2019-09-16

1737 The Tolman-Eichenbaum Machine: Unifying space and relational memory through generalisation in the hippocampal formation

Whittington, J. C.; Muller, T. H.; Mark, S.; Barry, C.; Burgess, N.; Behrens, T. E.

10.1101/770495 — neuroscience — Posted on 2019-09-16

1738 Stochastic sampling provides a unifying account of working memory limits

Schneegans, S.; Taylor, R.; Bays, P.

10.1101/771071 — neuroscience — Posted on 2019-09-16

1739 Genomic inbreeding trends in the global Thoroughbred horse population driven by influential sire lines and selection for exercise trait-related genes

McGivney, B. A.; Han, H.; Corduff, L. R.; Katz, L. M.; Tozaki, T.; MacHugh, D. E.; Hill, E.

10.1101/770545 — genetics — Posted on 2019-09-16

1740 Miocene and Pliocene speciation of Russula subsection Roseinae in temperate forests of eastern North America

Looney, B. P.; Adamcik, S.; Matheny, P. B.

10.1101/770289 — evolutionary biology — Posted on 2019-09-16

1741 The evolutionary plasticity of chromosome metabolism allows adaptation to DNA replication stress

Fumasoni, M.; Murray, A. W.

10.1101/770859 — evolutionary biology — Posted on 2019-09-16

1742 Haplotype-based inference of the distribution of fitness effects

Ortega-Del Vecchyo, D.; Lohmueller, K. E.; Novembre, J.

10.1101/770966 — evolutionary biology — Posted on 2019-09-16

1743 Understanding the evolution of interspecies interactions in microbial communities

Gorter, F. A.; Manhart, M.; Ackermann, M.

10.1101/770156 — ecology — Posted on 2019-09-16

1744 The social dynamics of collective problem-solving

Yahosseini, K. S.; Moussaid, M.

10.1101/771014 — animal behavior and cognition — Posted on 2019-09-16

1745 Saccade vigor as an implicit measure of subjective economic value

Yoon, T.; Jaleel, A.; Ahmed, A. A.; Shadmehr, R.

10.1101/770560 — neuroscience — Posted on 2019-09-16

1746 Single-cell profiling and SCOPE-seq reveal the lineage dynamics of adult neurogenesis and NOTUM as a key V-SVZ regulator

Mizrak, D.; Bayin, N. S.; Yuan, J.; Liu, Z.; Suciu, R.; Niphakis, M. J.; Ngo, N.; Lum, K. M.; Cravatt, B. F.; Joyner, A. L.; Sims, P. A.

10.1101/770610 — neuroscience — Posted on 2019-09-16

1747 DETECTing Merkel cell Polyomavirus in Merkel Tumours

Arora, R.; Gupta, K.; Vijaykumar, A.; Krishna, S.

10.1101/770537 — molecular biology — Posted on 2019-09-16

1748 Enhanced nutrient uptake is sufficient to drive emergent cross-feeding between bacteria

Fritts, R. K.; Bird, J. T.; Behringer, M. G.; Lipzen, A.; Martin, J.; Lynch, M.; McKinlay, J. B.

10.1101/770727 — microbiology — Posted on 2019-09-16

1749 Insertions of P{lacW} and P{EP} artificial transposons on the chromosomal divisions of Drosophila melanogaster are not randomly distributed

Bologa, A. M.; Ghita, I. C.; Ratiu, A. C.; Ecovoiu, A. A.

10.1101/770172 — genomics — Posted on 2019-09-16

1750 Future Preventive Gene Therapy of Polygenic Diseases from a Population Genetics Perspective

Oliynyk, R. T.

10.1101/770396 — genetics — Posted on 2019-09-16

1751 From rare Copy Number Variations to biological processes in ADHD

Harich, B.; van der Voet, M.; Klein, M.; Fenckova, M.; Cizek, P.; Franke, B.; Schenck, A.

10.1101/762419 — genetics — Posted on 2019-09-16

1752 Weak-Instrument Robust Tests in Two-Sample Summary-Data Mendelian Randomization

Wang, S.; Kang, H.

10.1101/769562 — genetics — Posted on 2019-09-16

1753 Mate-finding dispersal reduces local mate limitation and sex bias in dispersal

Mishra, A.; Tung, S.; Shree Sruti, V. R.; Srivathsa, S.; Dey, S.

10.1101/770412 — ecology — Posted on 2019-09-16

1754 Timing and duration of phenological subsidies: toward a mechanistic understanding of impacts on community structure and ecosystem processes in stream food chains

Takimoto, G.; Sato, T.

10.1101/768556 — ecology — Posted on 2019-09-16

1755 Can the response of above- and below-ground traits to overgrazing vary between annual and perennial species?

Zhang, H.; Long, W.

10.1101/771444 — ecology — Posted on 2019-09-16

1756 Practical Speedup of Bayesian Inference of Species Phylogenies by Restricting the Space of Gene Trees

Wang, Y.; Ogilvie, H. A.; Nakhleh, L.

10.1101/770784 — bioinformatics — Posted on 2019-09-16

1757 Coupled structural transitions enable highly cooperative regulation of human CTPS2 filaments

Lynch, E. M.; Kollman, J. M.

10.1101/770594 — biochemistry — Posted on 2019-09-16

1758 Dmc1 is a candidate for temperature tolerance during wheat meiosis

Draeger, T. N.; Martin, A. C.; Alabdullah, A. K.; Pendle, A.; Rey, M.-D.; Shaw, P.; Moore, G.

10.1101/759597 — plant biology — Posted on 2019-09-16

1759 Succinylation Links Metabolic Reductions to Amyloid and Tau Pathology

Yang, Y.; Tapias, V.; Acosta, D.; Xu, H.; Chen, H.; Bhawal, R.; Anderson, E.; Ivanova, E.; Lin, H.; Sagdullaev, B. T.; Klein, W.; Viola, K. L.; Gandy, S.; Haroutunian, V.; Beal, M. F.; Eliezer, D.; Zhang, S.; Gibson, G.

10.1101/764837 — neuroscience — Posted on 2019-09-16

1760 Reconstruction and functional annotation of Ascosphaera apis full-length transcriptome via PacBio single-molecule long-read sequencing

Chen, D.; Du, Y.; Fan, X.; Zhu, Z.; Jiang, H.; Wang, J.; Fan, Y.; Chen, H.; Zhou, D.; Xiong, C.; Zheng, Y.; Xu, X.; Luo, Q.; Guo, R.

10.1101/770040 — molecular biology — Posted on 2019-09-16

1761 Evidence that vertical transmission of the vaginal microbiota can persist into adolescence

Bassis, C. M.; Bullock, K. A.; Sack, D. E.; Saund, K.; Pirani, A.; Snitkin, E. S.; Alaniz, V. I.; Quint, E. H.; Young, V. B.; Bell, J.

10.1101/768598 — microbiology — Posted on 2019-09-16

1762 Microbial Communities Associated with Sustained Anaerobic Reductive Dechlorination of α-, β-, γ-, and δ-Hexachlorocyclohexane Isomers to Monochlorobenzene and Benzene

Qiao, W.; Puentes Jacome, L. A.; Tang, X.; Lomheim, L.; Yang, M. I.; Gaspard, S.; Avanzi, I. R.; Wu, J.; Ye, S.; Edwards, E. A.

10.1101/770354 — microbiology — Posted on 2019-09-16

1763 Trypsin treatment unlocks barrier for zoonotic coronaviruses infection

Menachery, V. D.; Dinnon, K.; Yount, B.; McAnarney, E. T.; Gralinski, L.; Hale, A. E.; Graham, R.; Scobey, T. D.; Anthony, S. J.; Wang, L.; Graham, B. S.; Randell, S. H.; Lipkin, W. I.; Baric, R. S.

10.1101/768663 — microbiology — Posted on 2019-09-16

1764 De novo EIF2AK1 and EIF2AK2 variants are associated with developmental delay, leukoencephalopathy, and neurologic decompensation

Mao, D.; Reuter, C. M.; Ruzhnikov, M. R. Z.; Beck, A. E.; Farrow, E. G.; Emrick, L. T.; Rosenfeld, J. A.; Mackenzie, K. M.; Robak, L.; Wheeler, M. T.; Burrage, L. C.; Jain, M.; Liu, P.; Calame, D.; Kuery, S.; Sillesen, M.; Schmitz-Abe, K.; Tonduti, D.; Spaccini, L.; Iascone, M.; Genetti, C. A.; Graf, M.; Tran, A.; Alejandro, M.; Undiagnosed Diseases Network, ; Lee, B. H.; Thiffault, I.; Agrawal, P. B.; Bernstein, J. A.; Bellen, H. J.; Chao, H.-T.

10.1101/757039 — genetics — Posted on 2019-09-16

1765 The effects of resource subsidy duration on detritus-based stream ecosystems: a stream mesocosm experiment

Sato, T.; Ueda, R.; Takimoto, G.

10.1101/770370 — ecology — Posted on 2019-09-16

1766 Reconstitution of basic mitotic spindles in cell-like confinement

Roth, S.; Garlea, I. C.; Vleugel, M.; Mulder, B.; Dogterom, M.

10.1101/770602 — cell biology — Posted on 2019-09-16

1767 Discovery of a small molecule having both potent anti-fibrotic and anti-inflammatory capabilities

Kim, H.-S.; Meang, M. K.; Ham, M.-J.; Seong, B.; Kim, I.-H.; Youn, B.-S.

10.1101/770404 — pharmacology and toxicology — Posted on 2019-09-16

1768 Bacteria control cell volume by coupling cell-surface expansion to dry-mass growth

Oldewurtel, E. R.; Kitahara, Y.; Cordier, B.; Özbaykal, G.; van Teeffelen, S.

10.1101/769786 — microbiology — Posted on 2019-09-16

1769 Yap1-driven intestinal repair is controlled by group 3 innate lymphoid cells

Romera-Hernandez, M.; Aparicio-Domingo, P.; Papazian, N.; Karrich, J. J.; Cornelissen, F.; Hoogenboezem, R. M.; Samsom, J. N.; Cupedo, T.

10.1101/769190 — immunology — Posted on 2019-09-16

1770 Spatial expression pattern of ZNF391 gene in the brains of patients with schizophrenia, bipolar disorders or major depressive disorder identifies new cross-disorder biotypes: A trans-diagnostic, top-down approach

Ren, H.; Meng, Y.; Zhang, Y.; Wang, Q.; Ma, X.; Li, X.; Wang, Y.; Sham, P. C.; Li, T.

10.1101/768515 — genomics — Posted on 2019-09-16

1771 Cross-disorder GWAS meta-analysis for Attention Deficit/Hyperactivity Disorder, Autism Spectrum Disorder, Obsessive Compulsive Disorder, and Tourette Syndrome

Yang, Z.; Wu, H.; Lee, P. H.; Tsetsos, F.; Davis, L. K.; Yu, D.; Lee, S. H.; Dalsgaard, S. D.; Haavik, J.; Barta, C.; Zayats, T.; Eapen, V.; Wray, N. R.; Devlin, B.; Daly, M.; Neale, B.; Borglum, A.; Crowley, J. J.; Scharf, J.; Mathews, C. A.; Faraone, S. V.; Franke, B.; Mattheisen, M.; Smoller, J. W.; Paschou, P.

10.1101/770222 — genetics — Posted on 2019-09-16

1772 Integrative analysis of multi-platform reverse-phase protein array data for the pharmacodynamic assessment of response to targeted therapies

Byron, A.; Bernhardt, S.; Ouine, B.; Cartier, A.; Macleod, K. G.; Carragher, N. O.; Sibut, V.; Korf, U.; Serrels, B.; de Koning, L.

10.1101/769158 — cancer biology — Posted on 2019-09-16

1773 Transmission Chains or Independent Solvers? A Comparative Study of Two Collective Problem-Solving Methods

Yahosseini, K. S.; Moussaid, M.

10.1101/770024 — animal behavior and cognition — Posted on 2019-09-16

1774 Changes in barnacle recruitment and recruit body size with intertidal elevation on wave-exposed rocky shores in Nova Scotia

Scrosati, R. A.

10.1101/766618 — zoology — Posted on 2019-09-16

1775 COMET: A toolkit for composing customizable genetic programs in mammalian cells

Donahue, P. S.; Draut, J. W.; Muldoon, J. J.; Edelstein, H. I.; Bagheri, N.; Leonard, J. N.

10.1101/769794 — synthetic biology — Posted on 2019-09-16

1776 Low-intensity environmental education can enhance perceptions of culturally taboo wildlife

Williams, S. T.; Williams, K. S.; Constant, N. L.; Swanepoel, L. H.; Taylor, P. J.; Belmain, S. R.; Evans, S. W.

10.1101/757724 — scientific communication and education — Posted on 2019-09-16

1777 Slowly-conducting pyramidal tract neurons in macaque and rat

Kraskov, A.; Soteropoulos, D.; Glover, I.; Lemon, R. N.; Baker, S. N.

10.1101/768770 — physiology — Posted on 2019-09-16

1778 Deep-Channel: A Deep Convolution and Recurrent Neural Network for Detection of Single Molecule Events

Celik, N.; O'Brien, F.; Zheng, Y.; Coenen, F.; Barrett-Jolley, R.

10.1101/767418 — physiology — Posted on 2019-09-16

1779 Brain-wide genetic mapping identifies the indusium griseum as a prenatal and shared target of pharmacologically-unrelated psychostimulants

Fuzik, J.; Rehman, S.; Girach, F.; G. Miklosi, A.; Korchynska, S.; Arque, G.; A. Romanov, R.; Hanics, J.; Wagner, L.; Meletis, K.; Yanagawa, Y.; G. Kovacs, G.; Alpar, A.; G.M. Hokfelt, T.; Harkany, T.

10.1101/759423 — neuroscience — Posted on 2019-09-16

1780 Preterm infants harbour diverse Klebsiella populations, including atypical species that encode and produce an array of antimicrobial resistance- and virulence-associated factors

Chen, Y.; Brook, T. C.; Soe, C. Z.; O'Neill, I.; Alcon-Giner, C.; Leelastwattanagul, O.; Phillips, S.; Caim, S.; Clarke, P.; Hall, L. J.; Hoyles, L.

10.1101/761924 — microbiology — Posted on 2019-09-16

1781 The pneumococcal two-component system VisRH is linked to enhanced intracellular survival of Streptococcus pneumoniae in influenza-infected pneumocytes

Reinoso-Vizcaino, N. M.; Cian, M. B.; Cortes, P. R.; Olivero, N. B.; Hernandez-Morfa, M.; Pinas, G. E.; Badapanda, C.; Rathore, A.; Perez, D. R.; Echenique, J.

10.1101/767855 — microbiology — Posted on 2019-09-16

1782 Rapid dissemination and monopolization of viral populations in mice revealed using a panel of barcoded viruses

McCune, B. T.; Lanahan, M. R.; tenOever, B. R.; Pfeiffer, J. K.

10.1101/769976 — microbiology — Posted on 2019-09-16

1783 Network Analysis Of Inflammatory Bowel Disease Reveals PTPN2 As New Monogenic Cause Of Intestinal Inflammation

Parlato, M.; Pazmandi, J.; Niam, Q.; Charbit-Henrion, F.; Begue, B.; Martin, E.; Thian, M.; Muller, F.; Maggioni, M.; Duclaux-Loras, R.; Rieux-Laucat, F.; Molina, T. J.; Latour, S.; Ruemmele, F.; Menche, J.; Rodrigues-Lima, F.; Boztug, K.; Cerf-Bensussan, N.

10.1101/768028 — immunology — Posted on 2019-09-16

1784 Phylogenetic, sequence and structural analysis of Insulin superfamily proteins reveals an indelible link between evolution and structure-function relationship

S, S.; Kundapura, S.; Dey, D.; Ramagopal, U. A.; Kulal, A.

10.1101/769497 — evolutionary biology — Posted on 2019-09-16

1785 A deeper understanding of intestinal organoid metabolism revealed by combining fluorescence lifetime imaging microscopy (FLIM) and extracellular flux analyses

Okkelman, I.; Neto, N.; Papkovsky, D.; Monaghan, M.; Dmitriev, R.

10.1101/771188 — cell biology — Posted on 2019-09-16

1786 Cell population effects in a mouse tauopathy model identified by single cell sequencing

Lisi, V.; Luna, G.; Apostolaki, A.; Giroux, M.; Kosik, K. S.

10.1101/771501 — cell biology — Posted on 2019-09-16

1787 Methylthioadenosine is Not Dramatically Elevated in MTAP-Homozygous Deleted Primary Glioblastomas

Barekatain, Y.; Yan, V. C.; Ackroyd, J. J.; Poral, A. H.; Tran, T.; Georgiou, D. K.; Arthur, K.; deCarvalho, A.; Lin, Y.-H.; Satani, N. B.; Ballato, E. S.; Verhaak, R.; deGroot, J.; Huse, J. T.; Asara, J. M.; Muller, F. L.

10.1101/769885 — cancer biology — Posted on 2019-09-16

1788 Time-dependent modulation of spinal excitability during action observation in the macaque monkey

Jerjian, S. J.; Lemon, R. N.; Kraskov, A.

10.1101/768804 — animal behavior and cognition — Posted on 2019-09-16

1789 Cognitive and non-cognitive outcomes associated with student engagement in a novel brain mapping and connectomics course-based undergraduate research experience

D'Arcy, C. E.; Martinez, A.; Khan, A. M.; Olimpo, J. T.

10.1101/768465 — scientific communication and education — Posted on 2019-09-16

1790 Early vegetation recovery after the 2008-2009 explosive eruption of the Chaiten Volcano

Moreno Gonzalez, R.; Diaz, I. A.; Christie, D. A.; Coopman, R. E.; Lara, A.

10.1101/746859 — ecology — Posted on 2019-09-16

1791 Dietary Induction and Modulation of Ferroptosis in Caenorhabditis elegans

Perez, M. A.; Magtanong, L.; Dixon, S. J.; Watts, J. L.

10.1101/772079 — cell biology — Posted on 2019-09-16

1792 Enhancement of endothelialization by topographical features is mediated by PTP1B-dependent endothelial adherens junctions remodeling

Gorji, A.; Toh, P. J. Y.; Toh, Y.-C.; Toyama, Y.; Kanchanawong, P.

10.1101/766816 — cell biology — Posted on 2019-09-16

1793 Mechanical Roles of Vinculin/β-catenin interaction in Adherens Junction

BERTOCCHI, C.; Ravasio, A.; Ong, H. T.; Toyama, Y.; Kanchanawong, P.

10.1101/770735 — cell biology — Posted on 2019-09-16

1794 kinfitr: Reproducible PET Pharmacokinetic Modelling in R

Matheson, G. J.

10.1101/755751 — bioinformatics — Posted on 2019-09-16

1795 A flexible behavior task allows quantitative analysis of cost-benefit evaluation in mice

Schneider, N.; Lisman, J.; Pi, H. J.

10.1101/701722 — neuroscience — Posted on 2019-09-16

1796 A dynamic role for dopamine receptors in the control of mammalian spinal networks

Sharples, S. A.; Burma, N.; Borowska-Fielding, J.; Kwok, C. H. T.; Eaton, S. E. A.; Baker, G.; Jean-Xavier, C.; Zhang, Y.; Trang, T.; Whelan, P.

10.1101/715326 — neuroscience — Posted on 2019-09-16

1797 Dynamic clamp constructed phase diagram of the Hodgkin-Huxley action potential model

Ori, H.; Hazan, H.; Marder, E.; Marom, S.

10.1101/766154 — neuroscience — Posted on 2019-09-16

1798 Delayed antibiotic exposure induces population collapse in enterococcal communities with drug-resistant subpopulations

Hallinen, K. M.; Karslake, J.; Wood, K. B.

10.1101/766691 — microbiology — Posted on 2019-09-16

1799 Most cancers carry a substantial deleterious load due to Hill-Robertson interference

Tilk, S.; Curtis, C.; Petrov, D.; McFarland, C. D.

10.1101/764340 — evolutionary biology — Posted on 2019-09-16

1800 Membrane composition influences the conformation and function of the dopamine transporter in vivo

Fong, W. M.; Erreger, K.; Choi, S. J.; Reddy, I.; Johnson, C. W.; Mosharov, E. V.; Javitch, J. A.; Yamamoto, A.

10.1101/755819 — neuroscience — Posted on 2019-09-16

1801 Human Endometrial Transcriptome and Progesterone Receptor Cistrome Reveal Important Pathways and Epithelial Regulators

Chi, R.-p. A.; Wang, T.; Adams, N. R.; Wu, S.-p.; Young, S. L.; Spencer, T. E.; DeMayo, F. J.

10.1101/680181 — developmental biology — Posted on 2019-09-16

1802 Correlation between Retinal Ganglion Cell Loss and Nerve Crush Force-Impulse Established with an Instrumented Tweezers in Mice

Liu, X.; Feng, L.; Shinde, I.; Cole, J. D.; Troy, J. B.; Saggere, L.

10.1101/687616 — neuroscience — Posted on 2019-09-16

1803 Low spontaneous mutation rate and Pleistocene radiation of pea aphids

Fazalova, V.; Nevado, B.

10.1101/769133 — evolutionary biology — Posted on 2019-09-16

1804 Cytosine methylation affects the mutability of neighbouring nucleotides in human, Arabidopsis, and rice

Kusmartsev, V.; Warnecke, T.

10.1101/764753 — genomics — Posted on 2019-09-16

1805 ganon: precise metagenomics classification against large and up-to-date sets of reference sequences

Piro, V. C.; Dadi, T. H.; Seiler, E.; Reinert, K.; Renard, B. Y.

10.1101/406017 — bioinformatics — Posted on 2019-09-16

1806 Intention to learn modulates the impact of reward and punishment on sequence learning

Steel, A.; Baker, C. I.; Stagg, C. J.

10.1101/759639 — neuroscience — Posted on 2019-09-16

1807 The Y chromosome contributes to sex-specific aging in Drosophila

Brown, E.; Nguyen, A. H.; Bachtrog, D.

10.1101/156042 — evolutionary biology — Posted on 2019-09-16

1808 Heterogeneous genetic invasions of three insecticide resistance mutations in Indo-Pacific populations of Aedes aegypti (L.)

Endersby-Harshman, N. M.; Schmidt, T. L.; Chung, J.; van Rooyen, A.; Weeks, A. R.; Hoffmann, A. A.

10.1101/768549 — evolutionary biology — Posted on 2019-09-16

1809 Discontinuous transcription of ribosomal DNA in human cells

Smirnov, E.; Trosan, P.; de Sousa Cabral, J. V.; Studeny, P.; Kereïche, S.; Jirsova, K.; Cmarko, D.

10.1101/768929 — cell biology — Posted on 2019-09-16

1810 Reproducible and Transparent Research Practices in Published Neurology Research

Rauh, S. L.; Torgerson, T.; Johnson, A.; Pollard, J.; Tritz, D. S.; Vassar, M.

10.1101/763730 — scientific communication and education — Posted on 2019-09-16

1811 Ectopic methylation of a single persistently-unmethylated CpG in the promoter of the vitellogenin gene abolishes its inducibility by estrogen through attenuation of USF binding.

Jiricny, J.; Kallenberger, L.; Erb, R.; Kralickova, L.; Patrignani, A.; Stöckli, E.

10.1101/768697 — molecular biology — Posted on 2019-09-16

1812 Molecular pathway of influenza pan-neuraminidase inhibitors resistance in an immunocompromised patient

Abed, Y.; Schibler, M.; Checkmahomed, L.; Carbonneau, J.; Venable, M.-C.; Giannotti, F.; Goncalves, A. R.; Kaiser, L.; Boivin, G.

10.1101/768614 — microbiology — Posted on 2019-09-16

1813 A de novo chromosome-level genome assembly of Coregonus sp. \"Balchen\": one representative of the Swiss Alpine whitefish radiation

De-Kayne, R.; Zoller, S.; Feulner, P. G. D.

10.1101/771600 — genomics — Posted on 2019-09-16

1814 Genetic integration of the stress response

Houslay, T. M.; Earley, R. L.; White, S. J.; Lammers, W.; Grimmer, A. J.; Travers, L.; Johnson, E.; Young, A. J.; Wilson, A. J.

10.1101/770586 — evolutionary biology — Posted on 2019-09-16

1815 Improved demand curve for food or drug consumption in animal experiments

Newman, M.; Ferrario, C. R.

10.1101/765461 — animal behavior and cognition — Posted on 2019-09-16

1816 Quorum sensing in Bacillus subtilis slows down biofilm formation by enabling sporulation bet hedging

Spacapan, M.; Danevcic, T.; Stefanic, P.; Mandic-Mulec, I.

10.1101/768671 — microbiology — Posted on 2019-09-16

1817 Evidence of multifaceted functions of codon usage in translation within the model beetle Tribolium castaneum

Whittle, C. A.; Kulkarni, A.; Extavour, C. G.

10.1101/754911 — evolutionary biology — Posted on 2019-09-16

1818 Measuring stepwise binding of a thermally fluctuating particle to a cell membrane without labeling

Rohrbach, A.; Meyer, T.; Kress, H.

10.1101/763680 — biophysics — Posted on 2019-09-16

1819 Origin of cooperativity in the activation of dimeric transcription factors

Welch, M.; Brasen, J. C.; Workman, C. T.; Sams, T.

10.1101/769661 — molecular biology — Posted on 2019-09-16

1820 Reconstructing species evolutionary trees using the numerical features of microRNA

Zhu, R.; Xin, D.; Zhang, Z.; Hu, Z.; Li, Y.; Chen, Q.

10.1101/770503 — bioinformatics — Posted on 2019-09-16

1821 The Study on Computer Vision-Assisted Cell Bank Construction and Screening & Classification

Feng, Y.; Hanlong, C.; Bai, X.; Chen, Y.; Dai, Y.; Feng, L.

10.1101/771089 — bioinformatics — Posted on 2019-09-16

1822 Large scale differential gene expression analysis identifies genes associated with Bipolar Disorder

Omar, M. N.; Youssef, M.; Abdellatif, M.

10.1101/770529 — bioinformatics — Posted on 2019-09-16

1823 Discovery Function Labels Based On Numerical Features Of MicroRNA Found In Plant

Zhu, R.; Liu, J.; Xin, D.; Zhang, Z.; Hu, Z.; Li, Y.; Chen, Q.

10.1101/770875 — bioinformatics — Posted on 2019-09-16

1824 GEO2RNAseq: An easy-to-use R pipeline for complete pre-processing of RNA-seq data

Seelbinder, B.; Wolf, T.; Priebe, S.; McNamara, S.; Gerber, S.; Guthke, R.; Linde, J.

10.1101/771063 — bioinformatics — Posted on 2019-09-16

1825 A Bayesian approach to accurate and robust signature detection on LINCS L1000 data

Qiu, Y.; Lu, T.; Lim, H.; Xie, L.

10.1101/769620 — bioinformatics — Posted on 2019-09-16

1826 Straightforward clustering of single-cell RNA-Seq data with t-SNE and DBSCAN

Wagner, F.

10.1101/770388 — bioinformatics — Posted on 2019-09-16

1827 Deep Augmented Multiview Clustering

Mariappan, R.; Liu, J.; Rajan, V.

10.1101/770016 — bioinformatics — Posted on 2019-09-16

1828 Fast, 3D isotropic imaging of whole mouse brain using multi-1 angle-resolved subvoxel SPIM

Nie, J.; Liu, S.; Yu, T.; Li, Y.; Ping, J.; Wan, P.; Zhao, F.; Huang, Y.; Mei, W.; Zeng, S.; Zhu, D.; Fei, P.

10.1101/704387 — bioengineering — Posted on 2019-09-16

1829 In vivo CRISPRa decreases seizures and rescues cognitive deficits in a rodent model of epilepsy

Colasante, G.; Qiu, Y.; Massimino, L.; Di Berardino, C.; Cornford, J.; Snowball, A.; Weston, M.; Jones, S. P.; Giannelli, S.; Lieb, A.; Schorge, S.; Kullmann, D. M.; Broccoli, V.; Lignani, G.

10.1101/431015 — neuroscience — Posted on 2019-09-16

1830 PGxCorpus: a Manually Annotated Corpus for Pharmacogenomics

Legrand, J.; Gogdemir, R.; Bousquet, C.; Dalleau, K.; Devignes, M.-D.; Digan, W.; Lee, C.-J.; Ndiaye, N.-C.; Petitpain, N.; Ringot, P.; Smail-Tabbone, M.; Toussaint, Y.; Coulet, A.

10.1101/534388 — bioinformatics — Posted on 2019-09-16

1831 Regeneration Rosetta: An interactive web application to explore regeneration-associated gene expression and chromatin accessibility

Rau, A.; Dhara, S.; Udvadia, A.; Auer, P.

10.1101/632018 — genomics — Posted on 2019-09-16

1832 A versatile bulk electrotransfection protocol for mouse embryonic fibroblast and iPS cells

Eghbalsaied, S.; Hyder, I.; Kues, W.

10.1101/763615 — genetics — Posted on 2019-09-16

1833 TRAF6 controls excitatory spinogenesis and excitation-inhibition balance through binding neuroplastin

Kumar Vemula, S.; Malci, A.; Junge, L.; Lehmann, A.-C.; Rama, R.; Hradsky, J.; Matute, R. A.; Naumann, M.; Kreutz, M. R.; Seidenbecher, C. I.; Gundelfinger, E. D.; Herrera-Molina, R.

10.1101/768341 — cell biology — Posted on 2019-09-16

1834 Fluid shear stress coupled with narrow constrictions induce cell type-dependent morphological and molecular changes in circulating tumor cells

Cognart, H. A.; Viovy, J.-L.; Villard, C.

10.1101/722306 — cancer biology — Posted on 2019-09-15

1835 Dynamic allocation of computational resources for deep learning-enabled cellular image analysis with Kubernetes

Bannon, D.; Moen, E.; Schwartz, M.; Borba, E.; Cui, S.; Huang, K.; Ho, A.; Camplisson, I.; Chang, B.; Osterman, E.; Graf, W.; Van Valen, D.

10.1101/505032 — systems biology — Posted on 2019-09-15

1836 Epidermal activation of Hedgehog signaling establishes an immunosuppressive microenvironment in basal cell carcinoma by modulating skin immunity

Grund-Groeschke, S.; Ortner, D.; Szenes-Nagy, A.; Zaborsky, N.; Weiss, R.; Neureiter, D.; Wipplinger, M.; Risch, A.; Hammerl, P.; Greil, R.; Sibilia, M.; Gratz, I. K.; Stoitzner, P.; Aberger, F.

10.1101/768796 — cancer biology — Posted on 2019-09-15

1837 SAME-clustering: Single-cell Aggregated Clustering via Mixture Model Ensemble

Huh, R.; Yang, Y.; Jiang, Y.; Shen, Y.; Li, Y.

10.1101/645820 — bioinformatics — Posted on 2019-09-15

1838 Fighting or Embracing Multiplicity in Neuroimaging? Neighborhood Leverage versus Global Calibration

Chen, G.; Taylor, P. A.; Cox, R. W.; Pessoa, L.

10.1101/706747 — neuroscience — Posted on 2019-09-15

1839 Dynamic allocation of computational resources for deep learning-enabled cellular image analysis with Kubernetes

Bannon, D.; Moen, E.; Schwartz, M.; Borba, E.; Cui, S.; Huang, K.; Ho, A.; Camplisson, I.; Chang, B.; Osterman, E.; Graf, W.; Van Valen, D.

10.1101/505032 — systems biology — Posted on 2019-09-15

1840 Evaluation of mitochondrial DNA copy number estimation techniques

Longchamps, R. J.; Castellani, C. A.; Yang, S. Y.; Newcomb, C. E.; Sumpter, J. A.; Lane, J.; Grove, M. L.; Guallar, E.; Pankratz, N.; Taylor, K. D.; Rotter, J. I.; Boerwinkle, E.; Arking, D.

10.1101/610238 — genetics — Posted on 2019-09-15

1841 Evidence for mutation-order speciation in Australian wildflower

Melo, M. C.; James, M. E.; Roda, F.; Bernal-Franco, D. M.; Wilkinson, M. J.; Liu, H.; Walter, G. M.; Ortiz-Barrientos, D.

10.1101/692673 — evolutionary biology — Posted on 2019-09-15

1842 SCOPE: a normalization and copy number estimation method for single-cell DNA sequencing

Wang, R.; Lin, D.-Y.; Jiang, Y.

10.1101/594267 — bioinformatics — Posted on 2019-09-15

1843 Pairwise learning of MRI scans using a convolutional Siamese network for prediction of knee pain

Chang, G. H.; Felson, D. T.; Qiu, S.; Guermazi, A.; Capellini, T. D.; Kolachalama, V. B.

10.1101/463497 — bioengineering — Posted on 2019-09-15

1844 Cerebellar Purkinje cell microcircuits are essential for tremor

Brown, A. M.; White, J. J.; van der Heijden, M. E.; Lin, T.; Sillitoe, R. V.

10.1101/770321 — neuroscience — Posted on 2019-09-15

1845 Uncovering Network Architecture Using an Exact Statistical Input-Output Relation of a Neuron Model

Rashid Shomali, S.; Nili Ahmadabadi, M.; Rasuli, S. N.; Shimazaki, H.

10.1101/479956 — neuroscience — Posted on 2019-09-15

1846 Efferent Modulation Of Spontaneous Lateral Line Activity During And After Zebrafish Motor Commands

Lunsford, E. T.; Skandalis, D. A.; Liao, J. C.

10.1101/769547 — neuroscience — Posted on 2019-09-15

1847 Arousal-State Dependent Alterations in VTA-GABAergic Neural Activity

Eban-Rothschild, A.; Borniger, J. C.; Rothschild, G.; Giardino, W. J.; Morrow, J. G.; de Lecea, L.

10.1101/770313 — neuroscience — Posted on 2019-09-15

1848 Paucity of adaptive selection in PmrAB two-component system may resist emergence of colistin resistance in Acinetobacter baumannii

Pagal, S.; Saranathan, R.; Rani, A.; Tomar, A.; Arunkumar, K. P.; Prashanth, K.

10.1101/753665 — microbiology — Posted on 2019-09-15

1849 Evidence for mutation-order speciation in Australian wildflower

Melo, M. C.; James, M. E.; Roda, F.; Bernal-Franco, D. M.; Wilkinson, M. J.; Liu, H.; Walter, G. M.; Ortiz-Barrientos, D.

10.1101/692673 — evolutionary biology — Posted on 2019-09-15

1850 Interferon-stimulated genes in zebrafish and human define an ancient arsenal of antiviral immunity

Levraud, J.-P.; Jouneau, L.; Briolat, V.; Laghi, V.; Boudinot, P.

10.1101/693333 — immunology — Posted on 2019-09-15

1851 Epidermal activation of Hedgehog signaling establishes an immunosuppressive microenvironment in basal cell carcinoma by modulating skin immunity

Aberger, F.; Grund-Groeschke, S.; Ortner, D.; Szenes-Nagy, A.; Zaborsky, N.; Weiss, R.; Neureiter, D.; Wipplinger, M.; Risch, A.; Hammerl, P.; Greil, R.; Sibilia, M.; Gratz, I. K.; Stoitzner, P.

10.1101/768796 — cancer biology — Posted on 2019-09-15

1852 Mechanotransduction of strain regulates an invasive phenotype in newly transformed epithelial cells

Chagnon-Lessard, S.; Jean-Ruel, H.; Godin, M.; Pelling, A.

10.1101/770487 — biophysics — Posted on 2019-09-15

1853 Predicting protein subcellular location using learned distributed representations from a protein-protein network

Pan, X.; Chen, L.; Liu, M.; Huang, T.; Cai, Y.-D.

10.1101/768739 — bioinformatics — Posted on 2019-09-15

1854 Frontal and parietal neurons encode reward prediction errors in multiple reference frames

Foley, N. C.; Cohanpour, M.; Semework, M.; Sheth, S. A.; Gottlieb, J.

10.1101/769869 — neuroscience — Posted on 2019-09-15

1855 Individual variation in dispersal and fecundity increases rates of spatial spread

Schreiber, S.; Beckman, N. G.

10.1101/702092 — ecology — Posted on 2019-09-15

1856 No evidence for an S cone contribution to the human circadian response to light

Spitschan, M.; Lazar, R.; Yetik, E.; Cajochen, C.

10.1101/763359 — neuroscience — Posted on 2019-09-15

1857 NIHBA: A Network Interdiction Approach with Hybrid Benders Algorithm for Strain Design

Jiang, S.; Wang, Y.; Kaiser, M.; Krasnogor, N.

10.1101/752923 — bioengineering — Posted on 2019-09-15

1858 Evidence for mutation-order speciation in Senecio lautus

Melo, M. C.; James, M. E.; Roda, F.; Bernal-Franco, D. M.; Wilkinson, M. J.; Liu, H.; Walter, G. M.; Ortiz-Barrientos, D.

10.1101/692673 — evolutionary biology — Posted on 2019-09-15

1859 How pirate phage interferes with helper phage: Comparison of the two distinct strategies

Mitarai, N.

10.1101/576587 — ecology — Posted on 2019-09-15

1860 Response to THC exposure correlates with personality

Kardash, T.; Rodin, D.; Davis, N.; Kirby, M.; Gorelick, J.; Koman, I.; Michaelevski, I.; Pinhasov, A.

10.1101/674044 — animal behavior and cognition — Posted on 2019-09-15

1861 Assessing reliability of intra-tumor heterogeneity estimates from single sample whole exome sequencing data

Abecassis, J.; Hamy, A.-S.; Laurent, C.; Sadacca, B.; Bonsang-Kitzis, H.; Reyal, F.; Vert, J.-P.

10.1101/440750 — bioinformatics — Posted on 2019-09-15

1862 Flexible Experimental Designs for Valid Single-cell RNA-sequencing Experiments Allowing Batch Effects Correction

Song, F.; Chan, G. M.; Wei, Y.

10.1101/533372 — bioinformatics — Posted on 2019-09-15

1863 A theoretical model of neural maturation in the developing spinal cord

Joshi, P.; Skromne, I.

10.1101/668640 — systems biology — Posted on 2019-09-14

1864 An In-Silico Investigation of Menthol Metabolism

Limpanuparb, T.; Lorpaiboon, W.; Chinsukserm, K.

10.1101/618975 — biochemistry — Posted on 2019-09-14

1865 Sympathetic and parasympathetic involvement in time constrained sequential foraging

Dundon, N. M.; Garrett, N.; Babenko, V.; Cieslak, M.; Daw, N. D.; Grafton, S. T.

10.1101/752493 — physiology — Posted on 2019-09-14

1866 Motion perception in the common marmoset

Cloherty, S. L.; Yates, J. L.; Graf, D.; DeAngelis, G. C.; Mitchell, J. F.

10.1101/522888 — neuroscience — Posted on 2019-09-14

1867 Disulfide disruption reverses mucus dysfunction in allergic airway disease

Morgan, L. E.; Shenoy, S. K.; Raclawska, D.; Emezienna, N. A.; Richardson, V. L.; Hara, N.; Harder, A. Q.; El-Batal, H. M.; Magin, C. M.; Villalon, D. E. G.; Duncan, G.; Hanes, J. S.; Suk, J. S.; Thornton, D. J.; Holguin, F.; Janssen, W. J.; Thelin, W. R.; Evans, C. M.

10.1101/768424 — physiology — Posted on 2019-09-14

1868 An integrative assessment of aquatic ecosystem services based on guideline thresholds

Fortin St-Gelais, N.; Lapierre, J.-F.; Siron, R.; Maranger, R.

10.1101/768200 — ecology — Posted on 2019-09-14

1869 Hydraulic diversity of El Cien Formation (Baja California Sur, Mexico) and the consequences of functional diversity in paleoclimate estimation using fossil wood

Martinez-Cabrera, H. I.; Estrada-Ruiz, E.

10.1101/768283 — paleontology — Posted on 2019-09-14

1870 Taxonomically and metabolically distinct microbial communities with depth and across a hillslope to riparian zone transect

Lavy, A.; Matheus Carnevali, P. B.; Keren, R.; Bill, M.; Wan, J.; Tokunaga, T. K.; Williams, K. H.; Hubbard, S. S.; Banfield, J. F.

10.1101/768572 — bioinformatics — Posted on 2019-09-14

1871 Kinomorphs: Shape-shifting tissues for developmental engineering

Viola, J. M.; Porter, C. M.; Gupta, A.; Alibekova, M.; Prahl, L. S.; Hughes, A. J.

10.1101/768218 — bioengineering — Posted on 2019-09-14

1872 Optoretinography: optical measurements of human coneand rod photoreceptor responses to light

Azimipour, M.; Valente, D.; Vienola, K.; Werner, J. S.; Zawadzki, R. J.; Jonnal, R. S.

10.1101/760306 — bioengineering — Posted on 2019-09-14

1873 Atrous Convolution with Transfer Learning for Skin Lesions Classification

Ratul, M. A. R.; Mozaffari, M. H.; Parimbelli, E.; Lee, W.

10.1101/746388 — cancer biology — Posted on 2019-09-14

1874 Individual Variation in Brain Network Topography is Linked to Schizophrenia Symptomatology

Nawaz, U.; Lee, I.; Beermann, A.; Shaun, E.; Keshavan, M.; Brady, R.

10.1101/692186 — neuroscience — Posted on 2019-09-14

1875 The effect of wrist posture on extrinsic finger muscle activity during single joint movements

Beringer, C. R.; Mansouri, M.; Fisher, L. E.; Collinger, J. L.; Munin, M. C.; Boninger, M. L.; Gaunt, R.

10.1101/769414 — bioengineering — Posted on 2019-09-14

1876 PGC-1α isoforms coordinate to balance hepatic metabolism and apoptosis in inflammatory environments

Leveille, M.; Besse-Patin, A.; Jouvet, N.; Gunes, A.; Jeromson, S.; Khan, N. P.; Sczelecki, S.; Baldwin, C.; Dumouchel, A.; Correia, J.; Jannig, P.; Petrillo, S.; Lazaris, A.; Boulais, J.; Metrakos, P.; Ruas, J. L.; Estall, J. L.

10.1101/703678 — molecular biology — Posted on 2019-09-14

1877 Evolutionarily Conserved Transcription Factors Drive the Oxidative Stress Response in Drosophila

Ryan, S. M.; Wildman, K.; Oceguera-Perez, B.; Barbee, S.; Mortimer, N. T.; Vrailas-Mortimer, A.

10.1101/735126 — evolutionary biology — Posted on 2019-09-14

1878 TRAF6 controls excitatory spinogenesis and excitation-inhibition balance though binding neuroplastin

Kumar Vemula, S.; Malci, A.; Junge, L.; Lehmann, A.-C.; Rama, R.; Hradsky, J.; Matute, R. A.; Naumann, M.; Kreutz, M. R.; Seidenbecher, C. I.; Gundelfinger, E. D.; Herrera-Molina, R.

10.1101/768341 — cell biology — Posted on 2019-09-14

1879 Phylogenies of extant species are consistent with an infinite array of diversification histories

Louca, S.; Pennell, M. W.

10.1101/719435 — evolutionary biology — Posted on 2019-09-14

1880 In vitro testing of flash-frozen sublingual membranes for storage and reproducible permeability studies of macromolecular drugs from solution or nanofiber mats.

Berka, P.; Stranska, D.; Semecky, V.; Berka, K.; Dolezal, P.

10.1101/690990 — pharmacology and toxicology — Posted on 2019-09-14

1881 Mesoscale liquid model of chromatin recapitulates nuclear order of eukaryotes.

Laghmach, R.; Pierro, M. D.; Potoyan, D. A.

10.1101/634980 — biophysics — Posted on 2019-09-14

1882 STELAR: A statistically consistent coalescent-based species tree estimation method by maximizing triplet consistency

Islam, M.; Sarker, K.; Das, T.; Reaz, R.; Bayzid, M. S.

10.1101/594911 — bioinformatics — Posted on 2019-09-14

1883 Drug susceptibility testing of Mycobacterium simiae: An emerging pathogen in Iran

Nasiri, M. J.; Amini, S.; Nikpor, Z.; Arefzadeh, S.; Mosavi, S. M. J.

10.1101/549428 — microbiology — Posted on 2019-09-14

1884 Visualization of myosin II filament dynamics in remodeling acto-myosin networks with interferometric scattering microscopy

Mosby, L. S.; Hundt, N.; Young, G. C.; Fineberg, A.; Polin, M.; Mayor, S.; Kukura, P.; Koester, D. V.

10.1101/199778 — biophysics — Posted on 2019-09-14

1885 A new GABAergic projection from the BNST onto accumbal parvalbumin neurons controls anxiety

Xiao, Q.; Zhou, X.; Wei, P.; Xie, L.; Han, Y.; Wu, B.; Wang, J.; Cai, A.; Xu, F.; Lu, Y.; Tu, J.; Wang, L.

10.1101/767228 — neuroscience — Posted on 2019-09-14

1886 Phasic signaling in the bed nucleus of the stria terminalis during fear learning predicts within- and across-session cued fear expression

Bjorni, M.; Rovero, N. G.; Yang, E. R.; Holmes, A.; Halladay, L. R.

10.1101/768416 — neuroscience — Posted on 2019-09-14

1887 Antagonistic Regulation of Circadian Output and Synaptic Development by the E3 Ubiquitin Ligase JETLAG and the DYSCHRONIC-SLOWPOKE Complex

Lamaze, A.; Jepson, J. E. C.; Akpoghiran, O.; Koh, K.

10.1101/769505 — neuroscience — Posted on 2019-09-14

1888 Convergence of unisensory-evoked signals via multiple pathways to the cerebellum

Shimuta, M.; Sugihara, I.; Ishikawa, T.

10.1101/769000 — neuroscience — Posted on 2019-09-14

1889 Automated Lifespan Determination Across Caenorhabditis Strains and Species Reveals Assay-Specific Effects of Chemical Interventions

Banse, S. A.; Lucanic, M.; Sedore, C. A.; Coleman-Hulbert, A. L.; Plummer, W. T.; Chen, E.; Kish, J. L.; Hall, D.; Onken, B.; Presley, M. P.; Jones, E. G.; Blue, B. W.; Garrett, T.; Abbott, M.; Xue, J.; Guo, S.; Johnson, E.; Foulger, A. C.; Chamoli, M.; Falkowski, R.; Melentijevic, I.; Harinath, G.; Huynh, P.; Patel, S.; Edgar, D.; Jarrett, C. M.; Guo, M.; Kapahi, P.; Lithgow, G. J.; Driscoll, M.; Phillips, P. C.

10.1101/757302 — physiology — Posted on 2019-09-14

1890 Brain dynamics for confidence-weighted learning

Meyniel, F.

10.1101/769315 — neuroscience — Posted on 2019-09-14

1891 Remodeling of the H3 nucleosomal landscape during mouse aging

Chen, Y.; Bravo, J. I.; Benayoun, B. A.

10.1101/769489 — genomics — Posted on 2019-09-14

1892 Plant-microbe co-evolution: allicin resistance in a Pseudomonas fluorescens strain (PfAR-1) isolated from garlic

Borlinghaus, J.; Bolger, A.; Schier, C.; Vogel, A.; Gruhlke, M. C. H.; Slusarenko, A. J.

10.1101/769265 — evolutionary biology — Posted on 2019-09-14

1893 Intraspecific trait variability and community assembly in hawkmoths (Lepidoptera: Sphingidae) across an elevational gradient in the eastern Himalayas, India

Mungee, M.; Athreya, R.

10.1101/768705 — ecology — Posted on 2019-09-14

1894 Structural Interpretation of Hydrogen-Deuterium Exchange with Maximum-Entropy Simulation Reweighting

Bradshaw, R. T.; Marinelli, F.; Faraldo-Gomez, J. D.; Forrest, L. R.

10.1101/769398 — biophysics — Posted on 2019-09-14

1895 TRAF6 controls excitatory spinogenesis and excitation-inhibition balance thought binding neuroplastin

Kumar Vemula, S.; Malci, A.; Junge, L.; Lehmann, A.-C.; Rama, R.; Hradsky, J.; Matute, R. A.; Naumann, M.; Kreutz, M. R.; Seidenbecher, C. I.; Gundelfinger, E. D.; Herrera-Molina, R.

10.1101/768341 — cell biology — Posted on 2019-09-14

1896 Arabidopsis thaliana natural variation in temperature-modulated immunity uncovers transcription factor UNE12 as a thermoresponsive regulator

Bruessow, F.; Bautor, J.; Hoffmann, G.; Parker, J. E.

10.1101/768911 — plant biology — Posted on 2019-09-14

1897 Establishing RPTE-derived cell lines expressing hTERT for studying BK polyomavirus

Zhao, L.; Imperiale, M.

10.1101/766675 — microbiology — Posted on 2019-09-14

1898 Do cooperatively breeding mammals live longer? A re-appraisal

Thorley, J.

10.1101/769455 — evolutionary biology — Posted on 2019-09-14

1899 SimBSI: An open-source Simulink library for developingclosed-loop brain signal interfaces in animals and humans

Ojeda, A.; Buscher, N.; Balasubramani, P.; Maric, V.; Ramanathan, D.; Mishra, J.

10.1101/769679 — bioengineering — Posted on 2019-09-14

1900 Two faces of the attentional blink: Gradual and discrete loss of perceptual awareness

Karabay, A.; Wang, J.; Wilhelm, S. A.; Martens, S.; Akyurek, E. G.

10.1101/769083 — neuroscience — Posted on 2019-09-14

1901 Complexities of Microtubule Population Dynamics within the Mitotic Spindle

Tipton, A. R.; Gorbsky, G. J.

10.1101/769752 — cell biology — Posted on 2019-09-14

1902 MetroNome - a visual data exploration platform for integrating human genotypic and phenotypic data across diseases

Stolte, C.; Shi, K.; Lapchyk, N.; Novod, N.; Abhyankar, A.; Ostrow, L. W.; Phatnani, H.; Bloom, T.

10.1101/769646 — bioinformatics — Posted on 2019-09-14

1903 The effect of wrist posture on extrinsic finger muscle activity during single joint movements

Beringer, C. R.; Mansouri, M.; Fisher, L. E.; Collinger, J. L.; Munin, M. C.; Boninger, M. L.; Gaunt, R.

10.1101/769414 — bioengineering — Posted on 2019-09-14

1904 Aggregatibacter actinomycetemcomitans LtxA hijacks endocytic trafficking pathways in human lymphocytes

Lally, E.; Boesze-Battaglia, K.; Dhingra, A.; Gomez, N. M.; Mitchell, C. H.; Giannakakis, A.; Fahim, S. A.; Benz, R.; Balashova, N.

10.1101/769778 — microbiology — Posted on 2019-09-14

1905 RNA-dependent RNA polymerase speed and fidelity are not the only determinants of the mechanism or efficiency of recombination.

Kim, H.; Ellis, V. D.; Woodman, A.; Zhao, Y.; Arnold, J.; Cameron, C.

10.1101/769224 — microbiology — Posted on 2019-09-14

1906 Suppression gene drive in continuous space can result in unstable persistence of both drive and wild-type alleles

Champer, J.; Kim, I.; Champer, S.; Clark, A. G.; Messer, P. W.

10.1101/769810 — ecology — Posted on 2019-09-14

1907 Predicting the genetic ancestry of 2.6 million New York City patients using clinical data

Ramlall, V.; Quinnies, K. M.; Vanguri, R.; Lorberbaum, T.; Goldstein, D. B.; Tatonetti, N. P.

10.1101/768440 — bioinformatics — Posted on 2019-09-14

1908 Characterization of OA development between sexes in the rat medial meniscal transection model

Pucha, K.; McKinney, J. M.; Fuller, J. M.; Willett, N. J.

10.1101/769521 — pathology — Posted on 2019-09-14

1909 Control of cartilage homeostasis and osteoarthritis progression by mTORC1/4E-BP/eIF4E axis

Kolupaeva, V.; Katsara, O.; Attur, M.

10.1101/768457 — molecular biology — Posted on 2019-09-14

1910 Lyb-2-4, a unique genomic region of hypervirulent carbapenem-resistant Acinetobacter baumannii

Zheng, C.; Zhang, J.; Zhang, M.; Liu, Z.; Zhong, Y.; Liu, S.; Cui, R.; Deng, Q.; Xu, Y.; Shi, Y.; Zeng, H.; Yang, X.; Lin, C.; Luo, Y.; Chen, H.; Wu, W.; Wu, J.; Zhang, T.; Lu, Y.; Liu, X.; Zou, Q.; Huang, W.

10.1101/768655 — microbiology — Posted on 2019-09-14

1911 Recent hybrids recapitulate ancient hybrid outcomes

Chaturvedi, S.; Lucas, L.; Buerkle, A.; Fordyce, J.; Forister, M.; Nice, C. C.; Gompert, Z.

10.1101/769901 — evolutionary biology — Posted on 2019-09-14

1912 Deviations from Hardy Weinberg Equilibrium at CCR5-Δ32 in Large Sequencing Data Sets

Wei, X.; Nielsen, R.

10.1101/768390 — evolutionary biology — Posted on 2019-09-14

1913 A Bayesian implementation of the multispecies coalescent model with introgression for comparative genomic analysis

Flouris, T.; Jiao, X.; Rannala, B.; Yang, Z.

10.1101/766741 — evolutionary biology — Posted on 2019-09-14

1914 Parasite transmission in aquatic ecosystems under climate change: joint effects of temperature, host behavior and elimination of parasite larvae by predators.

Gopko, M.; Mironova, E.; Pasternak, A. F.; Mikheev, V. N.; Taskinen, J.

10.1101/769281 — ecology — Posted on 2019-09-14

1915 A novel function of M. tuberculosis chaperonin paralog GroEL1 in copper homeostasis

ANSARI, M. Y.; BATRA, S. D.; OJHA, H.; ASHISH, F.; TYAGI, J. S.; MANDE, S. C.

10.1101/766162 — biophysics — Posted on 2019-09-14

1916 Green, orange, red, and far-red optogenetic tools derived from cyanobacteriochromes

Jang, J.; McDonald, S.; Uppalapati, M.; Woolley, A.

10.1101/769422 — synthetic biology — Posted on 2019-09-14

1917 Sex Lability and Dimorphism in Diecious Palmer Amaranth (Amaranthus palmeri)

B. Mesgaran, M.; Matzrafi, M.; Ohadi, S.

10.1101/769935 — plant biology — Posted on 2019-09-14

1918 Minimally invasive, pressure probe based sampling allows for in-situ gene expression analyses in plant cells.

Wada, H.; Castellarin, S. D.; Matthews, M. A.; Shackel, K. A.; Gambetta, G. A.

10.1101/768978 — plant biology — Posted on 2019-09-14

1919 Glymphatic Optimal Mass Transport with Lagrangian Workflow Reveals Advective and Diffusion Driven Solute Transport

Koundal, S.; Elkin, R.; Nadeem, S.; Xue, Y.; Constantinou, S.; Sanggaard, S.; Liu, X.; Monte, B.; Xu, F.; Van Nostrand, W.; Nedergaard, M.; Lee, H.; Wardlaw, J.; Benveniste, H.; Tannenbaum, A.

10.1101/765370 — physiology — Posted on 2019-09-14

1920 Claudin-12 deficiency causes nerve barrier breakdown, mechanical hypersensitivity and painful neuropathy

Chen, J. T.-C.; Hu, X.; Doppler, K.; Breitkreuz-Korff, O.; Otto, I. U.; Schwabe, J.; Reinhold, A.-K.; Guenzel, D.; Dithmer, S.; Hankir, M. K.; Fallier-Becker, P.; Winkler, L.; Blasig, R.; Sommer, C.; Brack, A.; Blasig, I. E.; Rittner, H.

10.1101/768267 — neuroscience — Posted on 2019-09-14

1921 3D Exploration of the Brainstem in 50-micron Resolution MRI

Makris, N.; Rushmore, R. J.; Wilson-Braun, P.; Papadimitriou, G.; Ng, I.; Rathi, Y.; Zhang, F.; O'Donnell, L.; Kubicki, M.; Yeterian, E.; Lemaire, J.-J.; Calabrese, E.; Johnson, G. A.; Kikinis, R.

10.1101/768002 — neuroscience — Posted on 2019-09-14

1922 RAD51 promotes non-homologous genetic rearrangements that are prevented by 53BP1

Guirouilh-Barbat, J.; Yu, W.; Babin, L.; Yaniz Galende, E.; Popova, T.; So, A.; Lescale, C.; Stern, M.-H.; Brunet, E.; Deriano, L.; Lopez, B. S.

10.1101/768788 — molecular biology — Posted on 2019-09-14

1923 Creating Artificial Human Genomes Using Generative Models

Yelmen, B.; Decelle, A.; Ongaro, L.; Marnetto, D.; Tallec, C.; Montinaro, F.; Furtlehner, C.; Pagani, L.; Jay, F.

10.1101/769091 — bioinformatics — Posted on 2019-09-14

1924 miRCoop: Identifying Cooperating miRNAs via Kernel Based Interaction Tests

Olgun, G.; Tastan, O.

10.1101/769307 — bioinformatics — Posted on 2019-09-14

1925 Copy number motifs expose genome instability type and predict driver events and disease outcome in breast cancer

Pladsen, A. V.; Nilsen, G.; Rueda, O. M.; Aure, M. R.; Borgan, O.; Liestol, K.; Vitelli, V.; Frigessi, A.; Langerod, A.; OSBREAC, ; Mathelier, A.; Engebraten, O.; Wedge, D.; Van Loo, P.; Caldas, C.; Borresen-Dale, A.-L.; Russnes, H. G.; Lingjaerde, O. C.

10.1101/769356 — bioinformatics — Posted on 2019-09-14

1926 Proteomic-based evaluation of nuclear transport of NLS-tagged trastuzumab-emtansine with enhanced cytotoxic potency.

Lacasse, V.; Beaudoin, S.; Jean, S.; Leyton, J.

10.1101/769588 — bioengineering — Posted on 2019-09-14

1927 Dissociable neural effects of temporal expectations due to passage of time and contextual probability

Todorovic, A.; Auksztulewicz, R.

10.1101/769372 — neuroscience — Posted on 2019-09-14

1928 Two uptake hydrogenases differentially interact with the aerobic respiratory chain during mycobacterial growth and persistence

Cordero, P. R.; Grinter, R.; Hards, K.; Cryle, M. J.; Warr, C. G.; Cook, G. M.; Greening, C.

10.1101/769216 — microbiology — Posted on 2019-09-14

1929 Updated functional annotation of the Mycobacterium bovis AF2122/97 reference genome.

Farrell, D.; Crispell, J.; Gordon, S. V.

10.1101/757823 — microbiology — Posted on 2019-09-14

1930 Inosine is an alternative carbon supply that supports effector T cell proliferation and anti-tumor function under glucose restriction

Wang, T.; Gnanaprakasam, J. R.; Chen, X.; Kang, S.; Xu, X.; Sun, H.; Liu, L.; Miller, E.; Cassel, T. A.; Sun, Q.; Vicente-Munoz, S.; Warmoes, M. O.; Lane, A. N.; Song, X.; Fan, T. W.- M.; Wang, R.

10.1101/766642 — immunology — Posted on 2019-09-14

1931 Lack of apolipoprotein A1 impairs optimal regulatory T cell homeostasis at steady state due to impaired IL-2 signaling

Gaddis, D. E.; Wu, R.; Parks, J. S.; Sorci-Thomas, M. G.; Hedrick, C. C.

10.1101/751107 — immunology — Posted on 2019-09-14

1932 Evolutionary dynamics of the SKN-1 -> MED -> END-1,3 regulatory gene cascade in Caenorhabditis endoderm specification

Maduro, M. F.

10.1101/769760 — genetics — Posted on 2019-09-14

1933 On the effect of asymmetrical trait inheritance on models of trait evolution

Duchen, P.; Alfaro, M.; Rolland, J.; Salamin, N.; Silvestro, D.

10.1101/768820 — evolutionary biology — Posted on 2019-09-14

1934 Interaction between host genes and M. tuberculosis lineage can affect tuberculosis severity: evidence for co-evolution

McHenry, M. L.; Bartlett, J.; Igo, R. P.; Wampande, E.; Bencheck, P.; Mayanja-Kizza, H.; Fluegge, K.; Hall, N. B.; Gagneux, S.; Tishkoff, S.; Wejse, C.; Sirugo, G.; Boom, W. H.; Joloba, M.; Williams, S. M.; Stein, C.

10.1101/769448 — evolutionary biology — Posted on 2019-09-14

1935 Genome and community-level interaction insights on wide carbon utilizing and element cycling function of Hydrothermarchaeota from hydrothermal sediment

Zhou, Z.; Liu, Y.; Xu, W.; Pan, J.; Luo, Z.-H.; Li, M.

10.1101/768564 — ecology — Posted on 2019-09-14

1936 Mosquito species and age influence thermal performance of traits relevant to malaria transmission

Miazgowicz, K. L.; Mordecai, E. A.; Ryan, S. J.; Hall, R. J.; Owen, H. J.; Andanlawo, T.; Balajii, K.; Murdock, C.

10.1101/769604 — ecology — Posted on 2019-09-14

1937 Comparative Anatomical Limits of CART-Cell Delivery to Tumours in Mice and Men

Brown, L. V.; Gaffney, E. A.; Ager, A.; Wagg, J.; Coles, M. C.

10.1101/759167 — cancer biology — Posted on 2019-09-14

1938 Defining and targeting adaptations to oncogenic KRASG12C inhibition using quantitative temporal proteomics

Santana-Codina, N.; Chandhoke, A. S.; Yu, Q.; Małachowska, B.; Kuljanin, M.; Gikandi, A.; Stanczak, M.; Gableske, S.; Jedrychowski, M. P.; Scott, D. A.; Aguirre, A. J.; Fendler, W.; Gray, N. S.; Mancias, J. D.

10.1101/769703 — cancer biology — Posted on 2019-09-14

1939 De Novo Protein Design for Novel Folds using Guided Conditional Wasserstein Generative Adversarial Networks (gcWGAN)

Karimi, M.; Zhu, S.; Cao, Y.; Shen, Y.

10.1101/769919 — bioinformatics — Posted on 2019-09-14

1940 Causal inference for the effect of environmental chemicals on chronic kidney disease

Zhao, J.; Hinton, P.; Ma, Q.

10.1101/769430 — bioinformatics — Posted on 2019-09-14

1941 Hormones as adaptive control systems in juvenile fish

Weidner, J.; Giske, J.; Eliassen, S.; Jensen, C. H.; Joergensen, C.

10.1101/768689 — animal behavior and cognition — Posted on 2019-09-14

1942 Longitudinal Changes of Resting-State Functional Connectivity of Amygdala Following Fear Learning and Extinction

Martynova, O.; Tetereva, A.; Balaev, V.; Portnova, G.; Ushakov, V.; Ivanitsky, A.

10.1101/769034 — neuroscience — Posted on 2019-09-14

1943 Plasmid transmitted small multidrug resistant (SMR) efflux pumps differ in gene regulation and enhance tolerance to quaternary ammonium compounds (QAC) when grown as biofilms

Slipski, C. J.; Jamieson, T. R.; Lam, A.; Leung Shing, V.; Bell, K.; Zhanel, G. G.; Bay, D. C.

10.1101/768630 — microbiology — Posted on 2019-09-14

1944 Diverse flanking sequence types of blaNDM in IncX3 and IncB/O/K/Z plasmids in Escherichia coli isolated from poultry

Zhu, J.; Cai, R.-M.; Zhang, L.-J.; Zheng, X.-R.; Lu, Y.-W.; Zhao, Q.-Y.; Chang, M.-X.; Jiang, H.

10.1101/768622 — microbiology — Posted on 2019-09-14

1945 Polypyrimidine Tract Binding Proteins are essential for B cell development

Monzon-Casanova, E.; Matheson, L. S.; Tabbada, K.; Zarnack, K.; Smith, C. W. J.; Turner, M.

10.1101/769141 — immunology — Posted on 2019-09-14

1946 Decoding the transcriptional response to ischemic stroke in young and aged mouse brain

Androvic, P.; Belov Kirdajova, D.; Tureckova, J.; Zucha, D.; Rohlova, E.; Abaffy, P.; Kriska, J.; Anderova, M.; Kubista, M.; Valihrach, L.

10.1101/769331 — genomics — Posted on 2019-09-14

1947 Integrative single-cell and bulk RNA-seq analysis in human retina identified cell type-specific composition and gene expression changes for age-related macular degeneration

Lyu, Y.; Zauhar, R.; Dana, N.; Strang, C.; Wang, K.; Liu, S.; Miao, Z.; Pan, N.; Gamlin, P.; Kimble, J.; Messinger, J.; Curcio, C.; Stambolian, D.; Li, M.

10.1101/768143 — genomics — Posted on 2019-09-14

1948 The conserved regulatory basis of mRNA contributions to the early Drosophila embryo differs between the maternal and zygotic genomes

Omura, C. S.; Lott, S. E.

10.1101/769638 — evolutionary biology — Posted on 2019-09-14

1949 Complex eukaryotic-like actin regulation systems from Asgard archaea

Akil, C.; Tran, L. T.; Orhant-Prioux, M.; Baskaran, Y.; Manser, E.; Blanchoin, L.; Robinson, R. C.

10.1101/768580 — evolutionary biology — Posted on 2019-09-14

1950 A cross-scale assessment of productivity-diversity relationships

Craven, D.; van der Sande, M.; Meyer, C.; Gerstner, K.; Bennett, J. M.; Giling, D. P.; Hines, J.; Phillips, H. R. P.; May, F.; Bannar-Martin, K.; Chase, J.; Keil, P.

10.1101/769232 — ecology — Posted on 2019-09-14

1951 Self-organised symmetry breaking in zebrafish reveals feedback from morphogenesis to pattern formation

Trivedi, V.; Fulton, T.; Attardi, A.; Anlas, K.; Dingare, C.; Martinez Arias, A.; Steventon, B. J.

10.1101/769257 — developmental biology — Posted on 2019-09-14

1952 Proteostasis and Energetics as Proteome Hallmarks of Aging and Influenza Challenge in Pulmonary Disease

Loguercio, S.; Hutt, D. M.; Rosa Campos, A.; Stoeger, T.; Grant, R. A.; McQuattie-Pimentel, A. C.; Abdala-Valencia, H.; Lu, Z.; Joshi, N.; Ridge, K.; Chandel, N. S.; Sznajder, J. I.; Morimoto, R. I.; Misharin, A. V.; Budinger, G. R. S.; Balch, W. E.

10.1101/769737 — cell biology — Posted on 2019-09-14

1953 Tumor cell-derived lymphotoxin alpha triggers metastatic extravasation through TNFRs/cIAP1

Vasilikos, L.; Haenggi, K.; Spilgies, L. M.; Wong, W. W.-L.

10.1101/766485 — cancer biology — Posted on 2019-09-14

1954 Arabidopsis PAD4 lipase-like domain is a minimal functional unit in resistance to green peach aphid

Dongus, J. A.; Shah, J.; Dijkgraaf, L.; Archer, L.; Deslandes, L.; Patel, M.; Bhandari, D. D.; Parker, J. E.

10.1101/769125 — plant biology — Posted on 2019-09-14

1955 Pain Stickiness in Complex Regional Pain Syndrome: A role for the Nucleus Accumbens

Simons, L. E.; Peng, K.; Kim, P. K.; Lebel, A.; Sethna, N.; Kronman, C.; Zurakowski, D.; Borsook, D.

10.1101/769802 — neuroscience — Posted on 2019-09-14

1956 Making the MOSTest of imaging genetics

van der Meer, D.; Frei, O.; Kaufmann, T.; Shadrin, A. A.; Devor, A.; Smeland, O. B.; Thompson, W.; Fan, C. C.; Holland, D.; Westlye, L. T.; Andreassen, O. A.; Dale, A.

10.1101/767905 — neuroscience — Posted on 2019-09-14

1957 The B. subtilis Rok protein compacts and organizes DNA by bridging

Qin, L.; Erkelens, A. M.; Markus, D.; Dame, R. T.

10.1101/769117 — molecular biology — Posted on 2019-09-14

1958 Progressive differentiation of memory CD8 T cells in the cervicovaginal tissue

Dave, V.; Cardozo Ojeda, E. F.; Mair, F.; Erickson, J.; Woodward-Davis, A.; Soerens, A.; Czartoski, J.; Teague, C.; Oberle, S.; Zehn, D.; Schiffer, J.; Lund, J. M.; Prlic, M.

10.1101/769711 — immunology — Posted on 2019-09-14

1959 ASlive: a database for alternative splicing atlas in livestock animals

Liu, J.; Tan, S.; Huang, S.; Huang, W.

10.1101/769273 — genomics — Posted on 2019-09-14

1960 An improved de novo assembly and annotation of the tomato reference genome using single-molecule sequencing, Hi-C proximity ligation and optical maps

Hosmani, P. S.; Flores-Gonzalez, M.; van de Geest, H.; Maumus, F.; Bakker, L. V.; Schijlen, E.; van Haarst, J.; Cordewener, J.; Sanchez-Perez, G.; Peters, S.; Fei, Z.; Giovannoni, J. J.; Mueller, L. A.; Saha, S.

10.1101/767764 — genomics — Posted on 2019-09-14

1961 PQM-1 controls hypoxic survival via regulation of lipid metabolism

Heimbucher, T.; Hog, J.; Murphy, C. T.

10.1101/769927 — genetics — Posted on 2019-09-14

1962 The tempo and mode of angiosperm mitochondrial genome divergence inferred from intraspecific variation in Arabidopsis thaliana

Wu, Z.; Waneka, G.; Sloan, D. B.

10.1101/769653 — genetics — Posted on 2019-09-14

1963 Genetic correlations across genetically determined and developmentally plastic alternative reproductive tactics

Abbott, J. K.; Rios-Cardenas, O.; Morris, M. R.

10.1101/768721 — evolutionary biology — Posted on 2019-09-14

1964 ML-morph: A fast, accurate and general approach for automated detection and landmarking of biological structures in images

Porto, A.; Voje, K. L.

10.1101/769075 — evolutionary biology — Posted on 2019-09-14

1965 Most cancers carry a substantial deleterious load due to Hill-Robertson interference

Tilk, S.; Curtis, C.; Petrov, D.; McFarland, C. D.

10.1101/764340 — evolutionary biology — Posted on 2019-09-14

1966 A framework for transcriptome-wide association studies in breast cancer in diverse study populations

Bhattacharya, A.; Garcia-Closas, M.; Olshan, A. F.; Perou, C. M.; Troester, M. A.; Love, M. I.

10.1101/769570 — cancer biology — Posted on 2019-09-14

1967 ChIP-Hub: an Integrative Platform for Exploring Plant Regulome

Chen, D.; Fu, L.-Y.; Zhang, P.; Chen, M.; Kaufmann, K.

10.1101/768903 — bioinformatics — Posted on 2019-09-14

1968 Machine Learning in Quality Assessment of Early Stage Next-Generation Sequencing Data

Albrecht, S.; Andrade-Navarro, M. A.; Fontaine, J.-F.

10.1101/768713 — bioinformatics — Posted on 2019-09-14

1969 A systematic pipeline for classifying bacterial operons reveals the evolutionary landscape of biofilm machineries

Bundalovic-Torma, C.; Whitfield, G. B.; Marmont, L. S.; Howell, P. L.; Parkinson, J.

10.1101/769745 — bioinformatics — Posted on 2019-09-14

1970 Hyaluronic acid particle hydrogels decrease cerebral atrophy and promote pro-reparative astrocyte/axonal infiltration after ischemic stroke

Sideris, E.; Yu, A.; Chen, J.; Carmichael, S. T.; Segura, T.

10.1101/768291 — bioengineering — Posted on 2019-09-14

1971 Delta-1 functionalized hydrogel promotes hESC-cardiomyocyte graft proliferation and maintains heart function post-injury

Gerbin, K. A.; Mitzelfelt, K. A.; Guan, X.; Martinson, A. M.; Murry, C. E.

10.1101/768226 — bioengineering — Posted on 2019-09-14

1972 Physics-based predictive simulations to explore the differential effects of motor control and musculoskeletal deficits on gait dysfunction in cerebral palsy: a retrospective case study

Falisse, A.; Pitto, L.; Kainz, H.; Hoang, H.; Wesseling, M.; Van Rossom, S.; Papageorgiou, E.; Bar-On, L.; Hallemans, A.; Desloovere, K.; Molenaers, G.; Van Campenhout, A.; De Groote, F.; Jonkers, I.

10.1101/769042 — bioengineering — Posted on 2019-09-14

1973 Anxious and obsessive-compulsive traits are independently associated with valuation of non-instrumental information

Bennett, D.; Sutcliffe, K.; Tan, N. P.-J.; Smillie, L. D.; Bode, S.

10.1101/768168 — animal behavior and cognition — Posted on 2019-09-14

1974 PREVALENCE OF UGT1A1 GENETIC VARIANTS IN ARGENTINEAN POPULATION, POTENTIAL IMPLICATIONS FOR PHARMACOGENOMIC TESTING

Cruz, C. V.; Scibona, P.; Belloso, W.; Cajal, R.

10.1101/768994 — genomics — Posted on 2019-09-13

1975 Direct evidence for transport of RNA from the mouse brain to the germline and offspring

O'Brien, E. A.; Ensbey, K. S.; Day, B. W.; Baldock, P. A.; Barry, G.

10.1101/686634 — evolutionary biology — Posted on 2019-09-13

1976 When does a minor outbreak become a major epidemic? Linking the risk from invading pathogens to practical definitions of a major epidemic

Thompson, R.; Gilligan, C.; Cunniffe, N.

10.1101/768853 — ecology — Posted on 2019-09-13

1977 Finding differentially expressed sRNA-Seq regions with srnadiff

Zytnicki, M.; Gonzalez, I.

10.1101/768838 — bioinformatics — Posted on 2019-09-13

1978 Feasibility of Remotely Supervised Transcranial Direct Current Stimulation and Cognitive Remediation: A Systematic Review

Gough, N.; Brkan, L.; Subramaniam, P.; Chiuccariello, L.; De Petrillo, A.; Mulsant, B.; Bowie, C.; Rajji, T. K.

10.1101/768879 — neuroscience — Posted on 2019-09-13

1979 Rich polymorphic variants of alpha satellite 34mer higher order repeats in hg38 assembly of human chromosome Y

Gluncic, M.; Vlahovic, I.; Paar, V.

10.1101/768861 — genomics — Posted on 2019-09-13

1980 LncRNA MIR4435-2HG mediates cisplatin resistance in HCT116 cells by regulating Nrf2 and HO-1

Zhong, X.; Luo, P.; Wu, S.; Zhou, C.; Yuan, X.; Li, H.; Chen, J.; Tian, Y.; Qiu, Y.; Ping Luo,ShuGui Wu,ChaoMing Zhou,Xia Yuan,HongMi Li,JinPing Chen,YunFei Tian,Yang Qiu,XiaoMing Zhong,

10.1101/768986 — cancer biology — Posted on 2019-09-13

1981 Lipidomics analysis of juveniles blue mussels (Mytilus edulis L. 1758), a key economic and ecological species.

Laudicella, V. A.; Beveridge, C.; Carboni, S.; Cota Franco, S.; Doherty, M. K.; Long, N.; Mitchell, E.; Stanley, M. S.; Whitfield, P. D.; Hughes, A. D.

10.1101/768937 — biochemistry — Posted on 2019-09-13

1982 Hierarchical learning of statistical regularities over multiple timescales of sound sequence processing: A dynamic causal modelling study

Fitzgerald, K.; Auksztulewicz, R.; Provost, A.; Paton, B.; Howard, Z.; Todd, J.

10.1101/768846 — neuroscience — Posted on 2019-09-13

1983 Activation of specific mushroom body output neurons inhibits proboscis extension and feeding behavior

Chia, J.; Scott, K.

10.1101/768960 — neuroscience — Posted on 2019-09-13

1984 The Trend of Suicide Reporting in the Media: an Effectiveness Study of Daily Surveillance over Nine Years

Wu, C.-Y.; Lee, M.-B.; Liao, S.-C.; Chan, C.-T.; Chen, C.-Y.

10.1101/768945 — neuroscience — Posted on 2019-09-13

1985 Whole genome sequence analysis reveals broad distribution of the RtxA type 1 secretion system and four novel type 1 secretion systems throughout the Legionella genus

Brown, C. L.; Garner, E.; Jospin, G.; Coil, D. A.; Schwake, D. O.; Eisen, J. A.; Mukhopadhyay, B.; Pruden, A.

10.1101/768952 — microbiology — Posted on 2019-09-13

1986 Cdc42 promotes Bgs1 recruitment for septum synthesis and glucanase localization for cell separation during cytokinesis in fission yeast.

Onwubiko, U. N.; Robinson, J.; Mustaf, R. A.; Das, M. E.

10.1101/754390 — cell biology — Posted on 2019-09-13

1987 The Role of a Crystallographically Unresolved Cytoplasmic Loop in Stabilizing the Bacterial Membrane Insertase YidC2

Harkey, T.; Govind Kumar, V.; Hettige, J.; Tabari, S. H.; Immadisetty, K.; Moradi, M.

10.1101/707778 — biophysics — Posted on 2019-09-13

1988 Derivation of oligodendrocyte precursor cells from human bone marrow stromal cells and use for re-myelination in the congenitally dysmyelinated brain

Lam, G.; Shea, G. K.-H.; Wu, K. L. K.; Li, M. T.-S.; Kwok, C. H.; Chan, Z. C. K.; Wong, C. Y.; Tsui, A. Y. P.; Shum, D. K. Y.; Chan, Y. S.

10.1101/658997 — neuroscience — Posted on 2019-09-13

1989 Loss of dominant caterpillar genera in a protected tropical forest

Salcido, D. M.; Forister, M. L.; Garcia, H.; Dyer, L. A.

10.1101/631028 — ecology — Posted on 2019-09-13

1990 Cannabinoid Receptor 2 (CB2) Signals via G-alpha-s and Induces IL-6 and IL-10 Cytokine Secretion in Human Primary Leukocytes

Saroz, Y.; Kho, D. T.; Glass, M.; Graham, S.; Grimsey, N. L.

10.1101/663831 — cell biology — Posted on 2019-09-13

1991 Combined mRNA and protein single cell analysis in a dynamic cellular system using SPARC

Reimegard, J.; Danielsson, M.; Tarbier, M.; Schuster, J.; Baskaran, S.; Panagiotou, S.; Dahl, N.; Friedlander, M. R.; Gallant, C. J.

10.1101/749473 — cell biology — Posted on 2019-09-13

1992 Cholesterol-dependent enrichment of understudied erythrocytic stages of human Plasmodium parasites

Brown, A. C.; Moore, C. C.; Guler, J. L.

10.1101/474338 — microbiology — Posted on 2019-09-13

1993 Xmas ESC: A new female embryonic stem cell system that reveals the BAF complex as a key regulator of the establishment of X chromosome inactivation

Keniry, A.; Jansz, N.; Gearing, L. J.; Wanigasuriya, I.; Chen, J.; Nefzger, C. M.; Hickey, P. F.; Gouil, Q.; Liu, J.; Breslin, K.; Iminitoff, M.; Beck, T.; Tapia del Fierro, A.; Kinkel, S. A.; Taberlay, P. C.; Willson, T.; Pakusch, M.; Ritchie, M. E.; Hilton, D. J.; Polo, J. M.; Blewitt, M. E.

10.1101/768507 — cell biology — Posted on 2019-09-13

1994 A VPS13D spastic ataxia mutation disrupts the conserved adaptor binding site in yeast Vps13

Dziurdzik, S. K.; Bean, B. D. M.; Davey, M.; Conibear, E.

10.1101/768366 — molecular biology — Posted on 2019-09-13

1995 A dynamic interaction between CD19 and the tetraspanin CD81 controls B cell co-receptor trafficking

Susa, K. J.; Seegar, T. C. M.; Blacklow, S. C.; Kruse, A.

10.1101/768275 — immunology — Posted on 2019-09-13

1996 The nuclear to cytoplasmic ratio directly regulates zygotic transcription in Drosophila

Wilky, H.; Syed, S.; Raimundo, J.; Lim, B.; Amodeo, A. A.

10.1101/766881 — developmental biology — Posted on 2019-09-13

1997 The ATG5 Interactome Links Clathrin Vesicular Trafficking With The ATG8 Lipidation Machinery For Autophagosome Assembly

Lane, J. D.; Baines, K.

10.1101/769059 — cell biology — Posted on 2019-09-13

1998 Frameshift mutations of YPEL3 alter the sensory circuit function in Drosophila

Kim, J. H.; Singh, M.; Pan, G.; Lopez, A.; Zito, N.; Bosse, B.; Ye, B.

10.1101/768358 — neuroscience — Posted on 2019-09-13

1999 DNA repair by Rad52 liquid droplets

Oshidari, R.; Huang, R.; Medghalchi, M.; Tse, E. Y. W.; Ashgriz, N.; Lee, H. O.; Wyatt, H.; Mekhail, K.

10.1101/768119 — molecular biology — Posted on 2019-09-13

2000 Shared regulatory pathways reveal novel genetic correlations between grip strength and neuromuscular disorders

Gokuladhas, S.; Schierding, W.; Cameron-Smith, D.; Wake, M.; Scotter, E.; O'Sullivan, J. M.

10.1101/765495 — genetics — Posted on 2019-09-13

2001 Real-time dynamics of Plasmodium NDC80 as a marker for the kinetochore during atypical mitosis and meiosis

Pandey, R.; Zeeshan, M.; Ferguson, D. J. P.; Markus, R.; Brady, D.; Daniel, E.; Stanway, R. R.; Holder, A. A.; Guttery, D. S.; Tewari, R.

10.1101/767830 — cell biology — Posted on 2019-09-13

2002 The Wnt pathway scaffold protein Axin promotes signaling specificity by suppressing competing kinase reactions

Gavagan, M.; Fagnan, E.; Speltz, E. B.; Zalatan, J. G.

10.1101/768242 — biochemistry — Posted on 2019-09-13

2003 Screening the Medicines for Malaria Venture Pathogen Box for invasion and egress inhibitors of the blood stage of Plasmodium falciparum reveals several inhibitory compounds

Dans, M. G.; Weiss, G. E.; Wilson, D. W.; Sleebs, B. E.; Crabb, B.; de Koning-Ward, T. F.; Gilson, P. R.

10.1101/768648 — cell biology — Posted on 2019-09-13

2004 VE-cadherin endocytosis controls vascular integrity and patterning during development

Myers, C. G.; Isaacson, R. H.; Cadwell, C. M.; Campos, J.; Hernandes, M. S.; Myers, K. R.; Seo, T.; Giang, W.; Griendling, K. K.; Kowalczyk, A. P.

10.1101/769182 — cell biology — Posted on 2019-09-13

2005 StemBond hydrogels optimise the mechanical microenvironment for embryonic stem cells

Labouesse, C.; Agley, C. C.; Tan, B. X.; Hofer, M.; Winkel, A.; Stirparo, G. G.; Stuart, H. T.; Verstreken, C. M.; Mansfield, W.; Bertone, P.; Franze, K.; Silva, J. C. R.; Chalut, K. J.

10.1101/768762 — cell biology — Posted on 2019-09-13

2006 Folding latency of fluorescent proteins affects the mitochondrial localization of fusion protein

Kashiwagi, S.; Fujioka, Y.; Satoh, A. O.; Yoshida, A.; Fujioka, M.; Nepal, P.; Tsuzuki, A.; Aoki, O.; Paudel, S.; Sasajima, H.; Ohba, Y.

10.1101/768432 — cell biology — Posted on 2019-09-13

2007 Anticipated ITD statistics are built into human sound localization

Pavao, R.; Sussman, E.; Fischer, B.; Pena, J.

10.1101/303347 — neuroscience — Posted on 2019-09-13

2008 Susceptibility rhythm to bacterial endotoxin in myeloid clock-knockout mice

Lang, V.; Ferencik, S.; Ananthasubramaniam, B.; Kramer, A.; Maier, B.

10.1101/766519 — immunology — Posted on 2019-09-13

2009 European maize genomes unveil pan-genomic dynamics of repeats and genes

Haberer, G.; Bauer, E.; Kamal, N.; Gundlach, H.; Fischer, I.; Seidel, M. A.; Spannagl, M.; Marcon, C.; Ruban, A.; Urbany, C.; Nemri, A.; Hochholdinger, F.; Ouzonova, M.; Houben, A.; Schoen, C. C.; Mayer, K. F. X.

10.1101/766444 — genomics — Posted on 2019-09-13

2010 Atoh1 is repurposed from neuronal to hair cell determinant by Gfi1 acting as a coactivator without redistributing Atoh1’s genomic binding sites

Costa, A.; Powell, L. M.; Soufi, A.; Lowell, S.; Jarman, A. P.

10.1101/767574 — developmental biology — Posted on 2019-09-13

2011 Nanoscale topography templates the organization of stable clathrin/AP-2 structures

Sansen, T.; Sanchez-Fuentes, D.; Rathar, R.; Colom-Diego, A.; El Alaoui, F.; de Rossi, S.; Viaud, J.; Macchione, M.; Matile, S.; Gaudin, R.; Carretero-Genevrier, A.; Picas, L.

10.1101/767590 — biophysics — Posted on 2019-09-13

2012 An Erwinia amylovora inducible promoter for intragenic improvement of apple fire blight resistance

Gaucher, M.; Righetti, L.; Aubourg, S.; Duge de Bernonville, T.; Brisset, M.-N.; Chevreau, E.; Vergne, E.

10.1101/767772 — bioengineering — Posted on 2019-09-13

2013 Genetic \"General Intelligence,\" Objectively Determined and Measured

de la Fuente, J.; Davies, G.; Grotzinger, A. D.; Tucker-Drob, E. M.; Deary, I. J.

10.1101/766600 — genetics — Posted on 2019-09-13

2014 CaMKII oxidation is a performance/disease trade-off in vertebrate evolution

Wang, Q.; Hernandez-Ochoa, E. O.; Viswanathan, M. C.; Blum, I. D.; Granger, J. M.; Murphy, K. R.; Wei, A.-C.; Aja, S.; Liu, N.; Antonescu, C. M.; Florea, L. D.; Talbot, C. C.; Mohr, D.; Wagner, K. R.; Regot, S.; Lovering, R. M.; Wu, M. N.; Cammarato, A.; Schneider, M. F.; Bever, G. S.; Anderson, M. E.

10.1101/767525 — evolutionary biology — Posted on 2019-09-13

2015 Metabolic Control of Viral Infection through PPAR-α Regulation of STING Signaling

Tao, L.; Lowe, A.; Wang, G.; Dozmorov, I.; Chang, T.; Yan, N.; Reese, T. A.

10.1101/731208 — immunology — Posted on 2019-09-13

2016 Adaptation mechanism of the adult zebrafish respiratoryorgan to endurance training

Messerli, M.; Aaldijk, D.; Haberthür, D.; Röss, H.; Garcia-Poyatos, C.; Sande-Melon, M.; Khoma, O.-Z.; Wieland, F. A. M.; Fark, S.; Djonov, V.

10.1101/744300 — developmental biology — Posted on 2019-09-13

2017 Human Endometrial Transcriptome and Progesterone Receptor Cistrome Reveal Important Pathways and Epithelial Regulators

Chi, R.-p. A.; Wang, T.; Adams, N. R.; Wu, S.-p.; Young, S. L.; Spencer, T. E.; DeMayo, F. J.

10.1101/680181 — developmental biology — Posted on 2019-09-13

2018 Cross-Sectional and Longitudinal Validation of Serum Neurofilament Light Chain (NfL) as a Biomarker of Parkinson’s Disease Progression

Mollenhauer, B.; Dakna, D.; Liu, T.-Y.; Galasko, D.; Foroud, T.; Zetterberg, H.; Schade, S.; Gera, R.; Wang, W.; Gao, F.; Kruse, N.; Frasier, M.; Chahine, L.; Coffey, C. S.; Singleton, A. B.; Simuni, T.; Weintraub, D.; Seibyl, J.; Toga, A. W.; Tanner, C. M.; Kieburtz, K.; Marek, K.; Siderowf, A.; Cedarbaum, J. M.; Hutten, S. J.; Trenkwalder, C.; Graham, D.

10.1101/762237 — neuroscience — Posted on 2019-09-13

2019 Long-term reciprocal gene flow in wild and domestic geese reveals complex domestication history

Heikkinen, M. E.; Ruokonen, M.; White, T. A.; Alexander, M. M.; Gunduz, I.; Dobney, K. M.; Aspi, J.; Searle, J. B.; Pyhäjärvi, T.

10.1101/706226 — evolutionary biology — Posted on 2019-09-13

2020 A reconstituted mammalian APC-kinesin complex selectively transports defined packages of axonal mRNAs

Baumann, S.; Komissarov, A.; Gili, M. L.; Ruprecht, V.; Wieser, S.; Maurer, S. P.

10.1101/701250 — cell biology — Posted on 2019-09-13

2021 Nano-twines to twine-bridges: Role of force exerting perpendicular lateral protrusions in fibroblastic cell contraction

Padhi, A.; Singh, K.; Franco-Barraza, J.; Marston, D.; Hahn, K. M.; Cukierman, E.; Kapania, R.; Nain, A. S.

10.1101/711507 — cell biology — Posted on 2019-09-13

2022 Enhanced information processing at revisited fixation locations

Nikolaev, A. R.; Giannini, M.; Meghanathan, R. N.; van Leeuwen, C.

10.1101/660308 — neuroscience — Posted on 2019-09-13

2023 Decoding the neuronal correlates of motion-in-depth from EEG

Himmelberg, M. M.; Segala, F. G.; Maloney, R. T.; Wade, A. R.

10.1101/661991 — neuroscience — Posted on 2019-09-13

2024 EpiMethylTag simultaneously detects ATAC-seq or ChIP-seq signals with DNA methylation

Lhoumaud, P.; Sethia, G.; Izzo, F.; Sakellaropoulos, T.; Snetkova, V.; Vidal, S.; Badri, S.; Cornwell, M.; Campigli Di Giammartino, D.; Kim, K.-T.; Apostolou, E.; Stadtfeld, M.; Landau, D.; Skok, J.

10.1101/549550 — genomics — Posted on 2019-09-13

2025 Estimating individuals’ genetic and non-genetic effects underlying infectious disease transmission from temporal epidemic data

Pooley, C. M.; Marion, G.; Bishop, S. C.; Bailey, R. I.; Doeschl-Wilson, A. B.

10.1101/618363 — epidemiology — Posted on 2019-09-13

2026 Synonymous codon substitutions perturb co-translational protein folding in vivo and impair cell fitness

Walsh, I. M.; Bowman, M. A.; Soto, I. F.; Rodriguez, A.; Clark, P. L.

10.1101/666552 — biochemistry — Posted on 2019-09-13

2027 Strategies to improve scFvs as crystallization chaperones suggested by analysis of a complex with the human PHD-bromodomain SP140

Fairhead, M.; Preger, C.; Wigren, E.; Strain-Damerell, C.; Ossipova, E.; Ye, M.; Makola, M.; Burgess-Brown, N. A.; Persson, H.; von Delft, F.; Graslund, S.

10.1101/767376 — biochemistry — Posted on 2019-09-13

2028 A new strategy for selection of crop cultivated varieties based on yield factors driving and meteorological prediction

Zhu, R.; Sun, K.; Yan, X.; Xin, D.; Jiang, H.; Zhang, Z.; Li, Y.; Hu, Z.; Qi, Z.; Liu, C.; Chen, Q.

10.1101/766253 — plant biology — Posted on 2019-09-13

2029 A Conserved Mechanism of APOBEC3 Relocalization by Herpesviral Ribonucleotide Reductase Large Subunits

Cheng, A. Z.; Nobrega de Moraes, S.; Attarian, C.; Yockteng-Melgar, J.; Jarvis, M. C.; Biolatti, M.; Galitska, G.; Dell'Oste, V.; Frappier, L.; Bierle, C. J.; Rice, S. A.; Harris, R. S.

10.1101/765735 — microbiology — Posted on 2019-09-13

2030 Open source 3D printable replacement parts for the WHO insecticide susceptibility bioassay system

Tomlinson, S.; Carrington Yates, H.; Oruni, A.; Ng'ang'a, H. N.; Weetman, D.; Donnelly, M. J.; Van't Hof, A. E.

10.1101/762849 — evolutionary biology — Posted on 2019-09-13

2031 Sensitive Detection of Protein Binding to the Plasma Membrane with Dual-Color Z-Scan Fluorescence

Angert, I.; Karuka, S. R.; Hennen, J.; Chen, Y.; Albanesi, J. P.; Mansky, L.; Müller, J.

10.1101/766436 — biophysics — Posted on 2019-09-13

2032 DCT4 - a new member of the dicarboxylate transporter family in C4 grasses.

Weissmann, S.; Huang, P.; Furuyama, K.; Wiechert, M.; Taniguchi, M.; Schnable, J.; Brutnell, T.; Mockler, T. C.

10.1101/762724 — plant biology — Posted on 2019-09-13

2033 High-resolution synchrotron imaging studies of intact fresh roots reveal soil bacteria promoted bioremediation and bio-fortification

Help, H.; Lusa, M.; Honkanen, A.-P.; Diaz, A.; Holler, M.; Salome, M.; Cloetens, P.; Makinen, H.; Huotari, S.; Suhonen, H.

10.1101/767558 — plant biology — Posted on 2019-09-13

2034 Isolation and quantification of blood apoptotic bodies in neurological patients

Serrano de las Heras, G.; Diaz-Maroto, I.; Carrion, B.; Perona-Moratalla, A. B.; Gracia, J.; Arteaga, S.; Hernandez-Fernandez, F.; Garcia-Garcia, J.; Castro-Robles, B.; Ayo-Martin, O.; Segura, T.

10.1101/757872 — neuroscience — Posted on 2019-09-13

2035 Primary cilium cAMP regulates cyclic saltatory neuronal migration at the centrosome

Stoufflet, J.; Chaulet, M.; Doulazmi, M.; Fouquet, C.; Dubacq, C.; Metin, C.; Trembleau, A.; Vincent, P.; Caille, I.

10.1101/765925 — neuroscience — Posted on 2019-09-13

2036 Alternative catalytic residues in the active site of Esco acetyltransferases

Ajam, T.; De, I.; Petkau, N.; Whelan, G.; Pena, V.; Eichele, G.

10.1101/766543 — molecular biology — Posted on 2019-09-13

2037 DNA replication stress induced by trifluridine determines tumor cell fate according to p53 status

Kataoka, Y.; Iimori, M.; Fujisawa, R.; Morikawa-Ichinose, T.; Niimi, S.; Wakasa, T.; Saeki, H.; Oki, E.; Miura, D.; Tsurimoto, T.; Maehara, Y.; Kitao, H.

10.1101/764522 — cancer biology — Posted on 2019-09-13

2038 Role of Cytosolic, Tyrosine-Insensitive Prephenate Dehydrogenase in Medicago truncatula

Schenck, C. A.; Westphal, J.; Jayaraman, D.; Garcia, K.; Wen, J.; Mysore, K. S.; Anee, J.-M.; Sumner, L. W.; Maeda, H. A.

10.1101/768317 — plant biology — Posted on 2019-09-13

2039 Alzheimer’s genetic risk factor FERMT2 (Kindlin-2) is regulated by risk allele-binding of miR-4504 and leads to synaptic dysfunction in an APP-dependent manner

10.1101/767194 — pathology — Posted on 2019-09-13

2040 SVF-derived extracellular vesicles carry characteristic miRNAs in lipedema

Priglinger, E.; Strohmeier, K.; Weigl, M.; Lindner, C.; Barsch, M.; Jacak, J.; Redl, H.; Grillari, J.; Sandhofer, M.; Hackl, M.; Wolbank, S.

10.1101/767483 — molecular biology — Posted on 2019-09-13

2041 Development of the duodenal, ileal, jejunal and caecal microbiota in chickens

Glendinning, L.; Watson, K. A.; Watson, M.

10.1101/768747 — microbiology — Posted on 2019-09-13

2042 A mathematical model of the effect of natural selection on adaptation forms that implemented by disruptive coloration of Taurotragus oryx

Bespalov, Y.; Nosov, K.; Kabalyants, P.

10.1101/368084 — systems biology — Posted on 2019-09-13

2043 Prenatal alcohol exposure programs offspring disease: Insulin resistance in adult males in a rat model of acute exposure

Nguyen, T. M.; Steane, S. E.; Moritz, K. M.; Akison, L. K.

10.1101/684639 — developmental biology — Posted on 2019-09-13

2044 An Erwinia amylovora inducible promoter for intragenic improvement of apple fire blight resistance

Gaucher, M.; Righetti, L.; Aubourg, S.; Duge de Bernonville, T.; Brisset, M.-N.; Chevreau, E.; Vergne, E.

10.1101/767772 — bioengineering — Posted on 2019-09-13

2045 Regulation of starvation-mediated hyperactivity and triglyceride metabolism by Short neuropeptide F and Insulin Like Peptide in Drosophila

Kujur, A. E.; Pathak, H.; Geo, A.; Sudhakar, S. R.; N Kannan, N. N.

10.1101/764688 — animal behavior and cognition — Posted on 2019-09-13

2046 Beyond the word and image: III. Neurodynamic properties of the semantic network

Jouen, A.-L.; Cazin, N.; Hidot, S.; Madden-Lombardi, C.; Ventre-Dominey, J.; Dominey, P. F.

10.1101/767384 — neuroscience — Posted on 2019-09-12

2047 GRASP: a Bayesian network structure learning method using adaptive sequential Monte Carlo

Yu, K.; Cui, Z.; Qiu, X.; Zhang, J.

10.1101/767327 — bioinformatics — Posted on 2019-09-12

2048 Dynamic production and loss of flagellar filaments during the bacterial life cycle

Zhuang, X.-Y.; Guo, S.; Li, Z.; Zhao, Z.; Kojima, S.; Homma, M.; Wang, P.; Lo, C.-J.; Bai, F.

10.1101/767319 — microbiology — Posted on 2019-09-12

2049 Evidence of hybridization, mitochondrial introgression and biparental inheritance of the kDNA minicircles in Trypanosoma cruzi I

Rusman, F.; Floridia-Yapur, N.; Ragone, P. G.; Diosque, P.; Tomasini, N.

10.1101/767368 — evolutionary biology — Posted on 2019-09-12

2050 Interleukin (IL)-17/IL-36 axis participates to the crosstalk between endothelial cells and keratinocytes during inflammatory skin responses

Failla, C. M.; Capriotti, L.; Scarponi, C.; Mercurio, L.; Facchiano, F.; Morelli, M.; Rossi, S.; Pagnanelli, G.; Albanesi, C.; Cavani, A.; Madonna, S.

10.1101/767400 — cell biology — Posted on 2019-09-12

2051 Further investigation of the potential anti-neoplastic, anti-inflammatory, and immunomodulatory actions of phenoxybenzamine using the Broad Institute CLUE platform.

Inchiosa, M. A.

10.1101/767392 — bioinformatics — Posted on 2019-09-12

2052 Extinction probabilities, times to extinction, basic reproduction number and growth rates for tsetse (Glossina spp) populations as a function of temperature

Are, E. B.; Hargrove, J. W.

10.1101/767350 — zoology — Posted on 2019-09-12

2053 Neocortical inhibitory interneuron subtypes display distinct responses to synchrony and rate of inputs

Tran, M. M.; Prince, L. Y.; Gray, D.; Saad, L.; Chasiotis, H.; Kwag, J.; Kohl, M. M.; Richards, B. A.

10.1101/671248 — neuroscience — Posted on 2019-09-12

2054 Genetic \"General Intelligence,\" Objectively Determined and Measured

de la Fuente, J.; Davies, G.; Grotzinger, A. D.; Tucker-Drob, E. M.; Deary, I. M.

10.1101/766600 — genetics — Posted on 2019-09-12

2055 Methyl-Metabolite Depletion Elicits Adaptive Responses to Support Heterochromatin Stability and Epigenetic Persistence

Haws, S. A.; Yu, D.; Ye, C.; Wille, C. K.; Nguyen, L. C.; Krautkramer, K. A.; Tomasiewicz, J. L.; Yang, S. E.; Miller, B. R.; Liu, W. H.; Igarashi, K.; Sridharan, R.; Tu, B. P.; Cryns, V. L.; Lamming, D. W.; Denu, J. M.

10.1101/726448 — biochemistry — Posted on 2019-09-12

2056 How brain reacts to attack at a local region

Tu, W.; Ma, Z.; Ma, Y.; Zhang, N.

10.1101/767863 — neuroscience — Posted on 2019-09-12

2057 Trajectories from Snapshots: Integrated proteomic and metabolic single-cell assays reveal multiple independent adaptive responses to drug tolerance in a BRAF-mutant melanoma cell line

Su, Y.; Li, G.; Ko, M. E.; Cheng, H.; Zhu, R.; Xue, M.; Wang, J.; Lee, J. W.; Frankiw, L.; Xu, A.; Wong, S.; Robert, L.; Takata, K.; Huang, S.; Ribas, A.; Levine, R.; Nolan, G. P.; Wei, W.; Plevritis, S. K.; Baltimore, D.; Heath, J. R.

10.1101/767988 — bioengineering — Posted on 2019-09-12

2058 Correction of z-motion artefacts to allow population imaging of synaptic activity in awake behaving mice

Ryan, T. M.; Hinojosa, A. J.; Vroman, R.; Papasavvas, C. A.; Lagnado, L.

10.1101/767640 — neuroscience — Posted on 2019-09-12

2059 Comparing serial X-ray crystallography and microcrystal electron diffraction (MicroED) as methods for routine structure determination from small macromolecular crystals

Wolff, A. M.; Young, I. D.; Sierra, R. G.; Brewster, A. S.; Martynowycz, M. W.; Nango, E.; Sugahara, M.; Nakane, T.; Ito, K.; Aquila, A.; Bhowmick, A.; Biel, J. T.; Carbajo, S.; Cohen, A. E.; Cortez, S.; Gonzalez, A.; Hino, T.; Im, D.; Koralek, J. D.; Kubo, M.; Lazarou, T. S.; Nomura, T.; Owada, S.; Samelson, A.; Tanaka, R.; Tanaka, T.; Thompson, E. M.; van den Bedem, H.; Woldeyes, R. A.; Yumoto, F.; Zhao, W.; Tono, K.; Boutet, S.; Iwata, S.; Gonen, T.; Sauter, N. K.; Fraser, J. S.; Thompson, M. C.

10.1101/767061 — biophysics — Posted on 2019-09-12

2060 A 3D structural affinity model for multi-epitope in silico germinal center simulations

Robert, P. A.; Meyer-Hermann, M.

10.1101/766535 — systems biology — Posted on 2019-09-12

2061 Deep-Channel: A Deep Convolution and Recurrent Neural Network for Detection of Single Molecule Events

Celik, N.; O'Brien, F.; Zheng, Y.; Coenen, F.; Barrett-Jolley, R.

10.1101/767418 — physiology — Posted on 2019-09-12

2062 Ciprofloxacin facilitates the transfer of XDR plasmids from commensal E. coli into epidemic fluoroquinolone-resistant Shigella sonnei

Pham, P. T.; Nguyen, T. N. T.; Thuy, D. V.; The, H. C.; Alcock, F.; Boinett, C.; Thanh, H. N. D.; Tuyen, H. T.; Thwaites, G. E.; Rabaa, M. A.; Baker, S.

10.1101/767251 — microbiology — Posted on 2019-09-12

2063 Evolution of herbivory remodels a Drosophila genome

Gloss, A. D.; Nelson Dittrich, A. C.; Lapoint, R. T.; Goldman Huertas, B.; Verster, K. I.; Pelaez, J. L.; Nelson, A. D. L.; Aguilar, J.; Armstrong, E.; Charboneau, J. L. M.; Groen, S. C.; Hembry, D. H.; Ochoa, C. J.; O'Connor, T. K.; Prost, S.; Suzuki, H. C.; Zaaijer, S.; Nabity, P. D.; Whiteman, N. K.

10.1101/767160 — evolutionary biology — Posted on 2019-09-12

2064 Targeting aberrant DNA methylation in mesenchymal stromal cells as a treatment for myeloma bone disease

Garcia-Gomez, A.; Li, T.; Rodriguez-Ubreva, J.; Ciudad, L.; Catala-Moll, F.; Martin, M.; San-Segundo, L.; Morales, X.; Ortiz de Solorzano, C.; Oyarzabal, J.; San Jose-Eneriz, E.; Agirre, X.; Prosper, F.; Garayoa, M.; Ballestar, E.

10.1101/767897 — cancer biology — Posted on 2019-09-12

2065 Blastodermal cuticle formation contributes to desiccation resistance in springtail eggs: eco-evolutionary implications for insect terrestrialization

Vargas, H. C. M.; Panfilio, K. A.; Roelofs, D.; Rezende, G. L.

10.1101/767947 — zoology — Posted on 2019-09-12

2066 Repurposing cell growth-regulating compounds identifies kenpaullone which ameliorates pathologic pain via normalization of inhibitory neurotransmission

Yeo, M.; Chen, Y.; Jiang, C.; Chen, G.; Lioudino, M.; Zeng, Q.; Wang, Z.; Busciglio, J.; Ji, R.-R.; Liedtke, W.

10.1101/767681 — neuroscience — Posted on 2019-09-12

2067 Establishing two principal dimensions of cognitive variation in Logopenic Progressive Aphasia

Ramanan, S.; Roquet, D.; Goldberg, Z.-l.; Hodges, J. R.; Piguet, O.; Irish, M.; Lambon Ralph, M. A.

10.1101/767269 — neuroscience — Posted on 2019-09-12

2068 Effects of the cannabinoid receptor agonist CP-55,940 on incentive salience attribution

Gheidi, A.; Cope, L. M.; Froehlich, B. N.; Atkinson, R.; Barcelo, C. N.; Morrow, J. D.

10.1101/767103 — neuroscience — Posted on 2019-09-12

2069 Coordination of humoral immune factors dictates compatibility between Schistosoma mansoni and Biomphalaria glabrata

Li, H.; Hambrook, J. R.; Pila, E. A.; Gharamah, A. A.; Fang, J.; Wu, X.; Hanington, P.

10.1101/767699 — microbiology — Posted on 2019-09-12

2070 Crumbs organizes the transport machinery by regulating apical levels of PI(4,5)P2 in Drosophila

Lattner, J.; Leng, W.; Knust, E.; Brankatschk, M.; Flores-Benitez, D.

10.1101/768010 — cell biology — Posted on 2019-09-12

2071 A Pairwise Distance Distribution Correction (DDC) algorithm for blinking-free super-resolution microscopy

Bohrer, C. H.; Yang, X.; Weng, X.; Tenner, B.; Ross, B.; Mcquillen, R.; Zhang, J.; Roberts, E.; Xiao, J.

10.1101/768051 — biophysics — Posted on 2019-09-12

2072 Orb-weaving spiders show a correlated syndrome of morphology and web structure in the wild

Fisher, D. N.; Yeager, J.; Pruitt, J. N.

10.1101/767335 — animal behavior and cognition — Posted on 2019-09-12

2073 Effects of predictive and incentive value manipulation on sign- and goal-tracking behavior

Maria-Rios, C. E.; Fitzpatrick, C. J.; Morrow, J. D.

10.1101/767095 — animal behavior and cognition — Posted on 2019-09-12

2074 Peptide-based quorum sensing systems in Paenibacillus polymyxa

Voichek, M.; Maass, S.; Kroniger, T.; Becher, D.; Sorek, R.

10.1101/767517 — microbiology — Posted on 2019-09-12

2075 Signaling to TRP53 and TAp63 from CHK1/CHK2 is responsible for elimination of most oocytes defective for either chromosome synapsis or recombination

Schimenti, J. C.; Rinaldi, V.; Bloom, J.

10.1101/768150 — genetics — Posted on 2019-09-12

2076 A modular microreservoir for active implantable drug delivery

Forouzandeh, F.; Zhu, X.; Ahamed, N. N.; Walton, J. P.; Frisina, R. D.; Borkholder, D. A.

10.1101/762716 — bioengineering — Posted on 2019-09-12

2077 An Erwinia amylovora inducible promoter for intragenic improvement of apple fire blight resistance

Gaucher, M.; Righetti, L.; Aubourg, S.; Duge de Bernonville, T.; Brisset, M.-N.; Chevreau, E.; Vergne, E.

10.1101/767772 — bioengineering — Posted on 2019-09-12

2078 Modeling the metabolic interplay between a parasitic worm and its bacterial endosymbiont allows the identification of novel drug targets

Curran, D. M.; Grote, A.; Nursimulu, N.; Geber, A.; Voronin, D.; Jones, D.; Ghedin, E.; Parkinson, J.

10.1101/767798 — systems biology — Posted on 2019-09-12

2079 Kinetic profiling of metabolic specialists demonstrates stability and consistency of in vivo enzyme turnover numbers

Heckmann, D.; Campeau, A.; Lloyd, C. J.; Phaneuf, P.; Hefner, Y.; Carrillo-Terrazas, M.; Feist, A. M.; Gonzalez, D. J.; Palsson, B. O.

10.1101/767996 — systems biology — Posted on 2019-09-12

2080 Peritubular Macrophages and Spermatogonia are Sequentially Increased in the Testis of Rats After Mono-(2-Ethylhexyl) Phthalate Exposure

Gillette, R.; Tiwary, R.; Voss, J. J. L. P.; Hewage, S. N.; Richburg, J. H.

10.1101/767707 — pharmacology and toxicology — Posted on 2019-09-12

2081 Learning Divisive Normalization in Primary Visual Cortex

Günthner, M. F.; Cadena, S. A.; Denfield, G. H.; Walker, E. Y.; Tolias, A. S.; Bethge, M.; Ecker, A. S.

10.1101/767285 — neuroscience — Posted on 2019-09-12

2082 Identifying Clostridioides difficile-inhibiting gut commensals using culturomics, phenotyping, and combinatorial community assembly

Ghimire, S.; Roy, C.; Wongkuna, S.; Antony, L.; Fenske, G.; Maji, A.; Keena, M. C.; Foley, A.; Scaria, J.

10.1101/767715 — microbiology — Posted on 2019-09-12

2083 A high-quality reference genome assembly of the saltwater crocodile, Crocodylus porosus, reveals patterns of selection in Crocodylidae

Ghosh, A.; Johnson, M. G.; Osmanski, A. B.; Louha, S.; Bayona-Vasquez, N. J.; Glenn, T. C.; Gongora, J.; Green, R. E.; Isberg, S.; Stevens, R. D.; Ray, D. A.

10.1101/767939 — genomics — Posted on 2019-09-12

2084 Methylome-Wide Association Study Of Central Adiposity Implicates Genes Involved In Immune And Endocrine Systems

Justice, A. E.; Chittoor, G.; Gondalia, R.; Melton, P. E.; Lim, E.; Grove, M. L.; Whitsel, E. A.; Liu, C.-T.; Cupples, L. A.; Fernandez-Rhodes, L.; Guan, W.; Bressler, J.; Fornage, M.; Boerwinkle, E.; Li, Y.; Demerath, E.; Heard-Costa, N.; Levy, D.; Stewart, J. D.; Baccarelli, A.; Hou, L.; Conneely, K.; Mori, T.; Beilin, L. J.; Huang, R.-C.; Gordon-Larsen, P.; Howard, A. G.; North, K. E.

10.1101/766832 — genomics — Posted on 2019-09-12

2085 CaMKII oxidation is a performance/disease trade-off in vertebrate evolution

10.1101/767525 — evolutionary biology — Posted on 2019-09-12

2086 Asymmetric gene flow causes cascading reproductive isolation

Ostevik, K. L.; Rifkin, J. L.; Xia, H.; Rausher, M. D.

10.1101/767970 — evolutionary biology — Posted on 2019-09-12

2087 The RAF oncogenes of vertebrates are ohnologs that derive from the two rounds of whole-genome duplications early in vertebrate evolution

Coward Black, A.; Bailey, M. C.; Ruane-Foster, M. J.; Opazo, J. C.; Hoffmann, F.

10.1101/767913 — evolutionary biology — Posted on 2019-09-12

2088 ISGylation drives basal breast tumour progression by promoting EGFR recycling and Akt signalling

von Kriegsheim, A.; Bolado-Carrancio, A.; Muir, M.; Ewing, A.; Macleod, K.; Gallagher, W.; Nguyen, L.; Carragher, N. O.; Semple, C.; Brunton, V.; Caswell, P.

10.1101/767533 — cancer biology — Posted on 2019-09-12

2089 Nanoscale topography templates the organization of stable clathrin/AP-2 structures

Picas, L.; Carretero-Genevrier, A.; Sansen, T.; Rathar, R.; Sanchez-Fuentes, D.; Colom-Diego, A.; El Alaoui, F.; Viaud, J.; Gaudin, R.; Matile, S.; de Rossi, S.; Macchione, M.

10.1101/767590 — biophysics — Posted on 2019-09-12

2090 2D-HELS-AA MS Seq: Direct sequencing of tRNA reveals its different isoforms and multiple dynamic base modifications

Zhang, N.; Shi, S.; Wang, X.; Ni, W.; Yuan, X.; Duan, J.; Jia, T. Z.; Yoo, B.; Ziegler, A.; Russo, J. J.; Li, W.; Zhang, S.

10.1101/767129 — biochemistry — Posted on 2019-09-12

2091 Altered hypothalamic diffusivity in Parkinsonian autonomic dysfunction

Rousseau, C.; Sklerov, M.; Browner, N.; Lee, Y. Z.; Boucaud, A.; Prieto, J.; Styner, M. A.; Dayan, E.

10.1101/767624 — neuroscience — Posted on 2019-09-12

2092 AFF3 and BACH2 are master regulators of metabolic inflexibility, β/α-cell transition, and dedifferentiation in type 2 diabetes

Son, J.; Ding, H.; Accili, D.; Califano, A.

10.1101/768135 — physiology — Posted on 2019-09-12

2093 A modular high-density 294-channel μECoG system on macaque vlPFC for auditory cognitive decoding

Chang, C.-H.; Lee, J.; Wang, C.; Williams, A.; Lucas, T.; Cohen, Y.; Viventi, J.

10.1101/768127 — neuroscience — Posted on 2019-09-12

2094 Intra-Specific variability in fluctuating environments - mechanisms of impact on species diversity

Steinmetz, B.; Kalyuzhny, M.; Shnerb, N.

10.1101/767491 — ecology — Posted on 2019-09-12

2095 Macrocyclization of an all-D linear peptide improves target affinity and imparts cellular activity: A novel stapled α-helical peptide modality

Kannan, S.; Aronica, P. G. A.; Ng, S.; Thean, D.; Frosi, Y.; Chee, S.; Shimin, J.; Yuen, T. Y.; Sadruddin, A.; Kaan, H. Y. K.; Chandramohan, A.; Wong, J. H.; Tan, Y. S.; Ferrer, F. J.; Arumugam, P.; Han, Y.; Chen, S.; Brown, C. J.; Johannes, C. W.; Henry, B.; Lane, D.; Sawyer, T. K.; Verma, C. S.; Partridge, A.

10.1101/767673 — biochemistry — Posted on 2019-09-12

2096 Does monetary reward increase visual working memory performance?

van den Berg, R.; Zou, Q.; Ma, W. J.

10.1101/767343 — animal behavior and cognition — Posted on 2019-09-12

2097 MisMatch Negativity-study showing pre-lexical sensitivity to both primary Final Accent and secondary Initial Accent in French

te Rietmolen, N.; El Yagoubi, R.; Astesano, C.

10.1101/727776 — neuroscience — Posted on 2019-09-12

2098 Cell-wall synthases contribute to bacterial cell-envelope integrity by actively repairing defects

Vigouroux, A.; Cordier, B.; Aristov, A.; Oldewurtel, E. R.; Özbaykal, G.; Chaze, T.; Matondo, M.; Bikard, D.; van Teeffelen, S.

10.1101/763508 — microbiology — Posted on 2019-09-12

2099 Is the distribution of the Acorn Woodpecker (Melanerpes formicivorus flavigula) associated with oaks and granaries? A local study in an urban area in northern South America

Londono Oikawa, H.; Pulgarin-R, P. C.

10.1101/765487 — ecology — Posted on 2019-09-12

2100 Leveraging Distributed Biomedical Knowledge Sources to Discover Novel Uses for Known Drugs

Womack, F.; McClelland, J.; Koslicki, D.

10.1101/765305 — bioinformatics — Posted on 2019-09-12

2101 Hippocampal subfields integrate information about past temporal and cognitive contexts

Dimsdale-Zucker, H. R.; Montchal, M. E.; Reagh, Z. M.; Wang, S.-F.; Libby, L. A.; Ranganath, C. R.

10.1101/766311 — neuroscience — Posted on 2019-09-12

2102 Physiology-forward identification of bile acid sensitive vomeronasal receptors

Wong, W. M.; Cao, J.; Zhang, X.; Doyle, W. I.; Leon Mercado, L.; Gautron, L.; Meeks, J. P.

10.1101/766592 — neuroscience — Posted on 2019-09-12

2103 Interhemispheric connections between olfactory bulbs improve odor detection

Kermen, F.; Yaksi, E.

10.1101/767210 — neuroscience — Posted on 2019-09-12

2104 Allergen-induced airway inflammation and Th2 cell development requires Blimp-1

He, K.; Hettinga, A.; Kale, S.; Xie, M. M.; Dent, A. L.; Ray, A.; Poholek, A. C.

10.1101/766246 — immunology — Posted on 2019-09-12

2105 Complete characterization of the human immune cell transcriptome using accurate full-length cDNA sequencing

Cole, C.; Byrne, A.; Adams, M.; Volden, R.; Vollmers, C.

10.1101/761437 — genomics — Posted on 2019-09-12

2106 Discovering Differences and Similarities among Species Based on Numeric Features of microRNAs

Zhu, R.; Zhang, Z.; Xin, D.; Li, Y.; Chen, Q.

10.1101/767046 — bioinformatics — Posted on 2019-09-12

2107 Haplotype genetic score analysis in 10,734 mother/infant pairs reveals complex maternal and fetal genetic effects underlying the associations between maternal phenotypes, birth outcomes and adult phenotypes

Chen, J.; Bacelis, J.; Navais, P. S.; Srivastava, A.; Juodakis, J.; Rouse, A.; Hallman, M.; Teramo, K.; Melbye, M.; Feenstra, B.; Freathy, R. M.; Davey-Smith, G.; Lawlor, D. A.; Murray, J. C.; Williams, S. M.; Jacobsson, B.; Muglia, L. J.; Zhang, G.

10.1101/737106 — genetics — Posted on 2019-09-12

2108 The influence of maternal malnutrition on folate and inositol production and transport in the placenta and gut - a mechanism for fetal growth restriction and fetal disorders?

Palladino, E.; Van Mieghem, T.; MacFarlane, A. J.; Connor, K. L.

10.1101/767012 — developmental biology — Posted on 2019-09-12

2109 Eye movements support behavioral pattern completion

Wynn, J. S.; Ryan, J. D.; Buchsbaum, B. R.

10.1101/764084 — neuroscience — Posted on 2019-09-12

2110 Neocortical inhibitory interneuron subtypes display distinct responses to synchrony and rate of inputs

Tran, M. M.; Prince, L. Y.; Gray, D.; Saad, L.; Chasiotis, H.; Kwag, J.; Kohl, M. M.; Richards, B. A.

10.1101/671248 — neuroscience — Posted on 2019-09-12

2111 Full-annual demography and seasonal cycles in a resident vertebrate

Guimaraes, M.; Correa, D.; Gaiarsa, M. P.; Kery, M.

10.1101/754929 — ecology — Posted on 2019-09-12

2112 Spatial control of nucleoporin assembly by Fragile X-related proteins

Agote-Aran, A.; Schmucker, S. S.; Jerabkova, K. J.; Jmel Boyer, I.; Berto, A.; Pacini, L.; Ronchi, P.; Kleiss, C.; Guerard, L.; Schwab, Y.; Moine, H.; Mandel, J.-L.; Jacquemont, S.; Bagni, C.; Sumara, I.

10.1101/767202 — cell biology — Posted on 2019-09-12

2113 Failure to clear developmental apoptosis contributes to the pathology of RNASET2-deficient leukoencephalopathy.

Hamilton, N.; Rutherford, H. A.; Isles, H. M.; Petts, J. J.; Henneke, M.; Gaertner, J.; Dunning, M.; Renshaw, S. A.

10.1101/744144 — neuroscience — Posted on 2019-09-12

2114 Dynamic clamp constructed phase diagram of the Hodgkin-Huxley action potential model

Ori, H.; Hazan, H.; Marder, E.; Marom, S.

10.1101/766154 — neuroscience — Posted on 2019-09-12

2115 A limited role for autophagy during arbovirus infection of mosquito cells

Brackney, D. E.; Correa, M. A.

10.1101/760728 — microbiology — Posted on 2019-09-12

2116 Deviations from dynamic equilibrium in ecological communities worldwide

Kalyuzhny, M.; Flather, C. H.; Shnerb, N.; Kadmon, R.

10.1101/766790 — ecology — Posted on 2019-09-12

2117 Degree and site of chromosomal instability define its oncogenic potential

Hoevenaar, W.; Janssen, A.; Quirindongo, A.; Ma, H.; Klaasen, S.; Teixeira, A.; Offerhaus, J.; Medema, R.; Jelluma, N.; Kops, G.

10.1101/638460 — cancer biology — Posted on 2019-09-12

2118 Evolution of Larval Segment Position across 12 Drosophila Species

Kalay, G.; Atallah, J.; Sierra, N. C.; Tang, A. M.; Crofton, A. E.; Murugesan, M. K.; Wykoff-Clary, S.; Lott, S. E.

10.1101/653121 — evolutionary biology — Posted on 2019-09-12

2119 No division of labour, and subfertile foundresses, in a phyllode-gluing Acacia thrips

Gilbert, J. D.

10.1101/755371 — ecology — Posted on 2019-09-12

2120 Atrous Convolution with Transfer Learning for Skin Lesions Classification

Ratul, M. A. R.; Mozaffari, M. H.; Parimbelli, E.; Lee, W.

10.1101/746388 — cancer biology — Posted on 2019-09-12

2121 Decoding the neuronal correlates of motion-in-depth from EEG

Himmelberg, M. M.; Segala, F. G.; Maloney, R. T.; Wade, A. R.

10.1101/661991 — neuroscience — Posted on 2019-09-12

2122 Neurocognitive reorganization between crystallized intelligence, fluid intelligence and white matter microstructure in two age-heterogeneous developmental cohorts

Simpson-Kent, I.; Fuhrmann, D.; Bathelt, J.; Achterberg, J.; Borgeest, G. S.; Kievit, R.

10.1101/593509 — neuroscience — Posted on 2019-09-12

2123 Fgf-driven Tbx protein activities directly induce myf5 and myod to initiate zebrafish myogenesis

Osborn, D. P. S.; Li, K.; Cutty, S. J.; Nelson, A. C.; Wardle, F. C.; Hinits, Y.; Hughes, S. M.

10.1101/766501 — developmental biology — Posted on 2019-09-12

2124 Multiple features within Sed5p mediate it’s COPI-independent trafficking and Golgi localization

Banfield, D. K.; Gao, G.

10.1101/765990 — cell biology — Posted on 2019-09-12

2125 High Resolution Structural Insights into Heliorhodopsin Family

Kovalev, K.; Volkov, D.; Astashkin, R.; Alekseev, A.; Gushchin, I.; Haro-Moreno, J.; Rogachev, A.; Balandin, T.; Borshchevskiy, V.; Popov, A.; Bourenkov, G.; Bamberg, E.; Rodriguez-Valera, F.; Bueldt, G.; Gordeliy, V.

10.1101/767665 — biophysics — Posted on 2019-09-12

2126 Phenotypic plasticity as a mechanism of cave colonization and adaptation

Bilandzija, H.; Hollifield, B.; Steck, M.; Meng, G.; Ng, M.; Koch, A.; Gracan, R.; Cetkovic, H.; Porter, M.; Renner, K.; Jeffery, W. R.

10.1101/657460 — evolutionary biology — Posted on 2019-09-12

2127 Atoh1 is repurposed from neuronal to hair cell determinant by Gfi1 acting as a coactivator without redistribution of its genomic binding sites

Costa, A.; Powell, L. M.; Soufi, A.; Lowell, S.; Jarman, A. P.

10.1101/767574 — developmental biology — Posted on 2019-09-12

2128 TGFβ signaling is required for tenocyte recruitment and functional neonatal tendon regeneration

Kaji, D. A.; Howell, K. L.; Huang, A. H.

10.1101/767467 — developmental biology — Posted on 2019-09-12

2129 Alternative splicing regulation by GWAS risk loci for breast cancer

Machado, J.; Magno, R.; Xavier, J. M.; Maia, A.-T.

10.1101/766394 — cancer biology — Posted on 2019-09-12

2130 Robustness and the evolution of length control strategies in the type III secretion system and flagellar hook

Nariya, M. K.; Mallela, A.; Shi, J. J.; Deeds, E. J.

10.1101/766733 — biophysics — Posted on 2019-09-12

2131 LFMD: detecting low-frequency mutations in genome sequencing data without molecular tags

Ye, R.; Ruan, J.; Zhuang, X.; Qi, Y.; An, Y.; Xu, J.; Mak, T.; Liu, X.; Zhang, X.; Yang, H.; Xu, X.; Baum, L.; Nie, C.; Sham, P. C.

10.1101/617381 — bioinformatics — Posted on 2019-09-12

2132 Dynamic clamp constructed phase diagram of the Hodgkin-Huxley action potential model

Ori, H.; Hazan, H.; Marder, E.; Marom, S.

10.1101/766154 — neuroscience — Posted on 2019-09-12

2133 Empirical evaluation of fused EEG-MEG source reconstruction. Application to auditory mismatch generators

lecaignard, f.; Bertrand, O.; Caclin, A.; Mattout, J.

10.1101/765966 — neuroscience — Posted on 2019-09-12

2134 Delayed antibiotic exposure induces population collapse in enterococcal communities with drug-resistant subpopulations

Hallinen, K. M.; Karslake, J.; Wood, K. B.

10.1101/766691 — microbiology — Posted on 2019-09-12

2135 Genomics to aid species delimitation and effective conservation of the Sharpnose Guitarfish (Glaucostegus granulatus)

johri, s.; Fellows, S. R.; Solanki, J. B.; Busch, A.; Livingston, I.; Cantu, V. A.; Doane, M. P.; Morris, M.; Mora, M. F.; Goodman, A. Z.; Tiwari, A.; Edwards, R. A.; Dinsdale, E. A.

10.1101/767186 — genomics — Posted on 2019-09-12

2136 Sex-biased gene expression is repeatedly masculinized in asexual females

Parker, D. J.; Bast, J.; Jalvingh, K.; Dumas, Z.; Robinson-Rechavi, M.; Schwander, T.

10.1101/553172 — evolutionary biology — Posted on 2019-09-12

2137 Developmentally regulated tcf7l2 splice variants mediate transcriptional repressor functions during eye formation

Young, R. M.; Ewan, K. B.; Ferrer, V. P.; Allende, M. L.; Godovac-Zimmermann, J.; Dale, T. C.; Wilson, S. W.

10.1101/607713 — developmental biology — Posted on 2019-09-12

2138 The Dynamic Strength of the Hair-Cell Tip Link Reveals Mechanisms of Hearing and Deafness

Mulhall, E. M.; Ward, A.; Yang, D.; Koussa, M. A.; Corey, D. P.; Wong, W. P.

10.1101/763847 — biophysics — Posted on 2019-09-12

2139 Optimal design of single-cell RNA sequencing experiments for cell-type-specific eQTL analysis

Mandric, I.; Schwarz, T.; Majumdar, A.; Perez, R.; Subramaniam, M.; Ye, C. J.; Pasaniuc, B.; Halperin, E.

10.1101/766972 — bioinformatics — Posted on 2019-09-12

2140 Tree congruence: quantifying similarity between dendrogram topologies

Vidovic, S. U.

10.1101/766840 — evolutionary biology — Posted on 2019-09-12

2141 Osteoporosis- and obesity-risk interrelationships: An epigenetic analysis of GWAS-derived SNPs at the developmental gene TBX15

Zhang, X.; Ehrlich, K. C.; Hu, X.; Deng, H.-W.; Shen, H.; Ehrlich, M.

10.1101/766584 — bioinformatics — Posted on 2019-09-12

2142 Mechanisms that allow cortical preparatory activity without inappropriate movement

Darlington, T. R.; Lisberger, S. G.

10.1101/766873 — neuroscience — Posted on 2019-09-12

2143 What your eye tells your brain

Reinhard, K.; Muench, T. A.

10.1101/766170 — neuroscience — Posted on 2019-09-12

2144 Salmonella grows massively and aerobically in fecal matter

Guerrero, T.; Zapata, S.; Trueba, G.

10.1101/766782 — microbiology — Posted on 2019-09-12

2145 A model Roseobacter employs a diffusible killing mechanism to eliminate competitors

Sharpe, G.; Gifford, S.; Septer, A. N.

10.1101/766410 — microbiology — Posted on 2019-09-12

2146 Determining the impact of uncharacterized inversions in the human genome by droplet digital PCR

Puig, M.; Lerga-Jaso, J.; Giner-Delgado, C.; Pacheco, S.; Izquierdo, D.; Delprat, A.; Gaya-Vidal, M.; Regan, J. F.; Karlin-Neumann, G.; Caceres, M.

10.1101/766915 — genomics — Posted on 2019-09-12

2147 E. coli TraR allosterically regulates transcription initiation by altering RNA polymerase conformation and dynamics

Chen, J.; Gopalkrishnan, S.; Chiu, C.; Chen, A. Y.; Campbell, E. A.; Gourse, R. L.; Ross, W.; Darst, S. A.

10.1101/766725 — biophysics — Posted on 2019-09-12

2148 Regulatory context drives conservation of glycine riboswitch aptamers

Crum, M.; Ram-Mohan, N.; Meyer, M. M.

10.1101/766626 — bioinformatics — Posted on 2019-09-12

2149 Linked optical and gene expression profiling of single cells at high throughput

Zhang, J. Q.; Siltanen, C. A.; Liu, L.; Chang, K.-C.; Gartner, Z. J.; Abate, A. R.

10.1101/766683 — bioengineering — Posted on 2019-09-12

2150 Understanding the role of urban design in disease spreading

Brizuela, N. G.; Garcia-Chan, N.; Gutierrez Pulido, H.; Chowell, G.

10.1101/766667 — systems biology — Posted on 2019-09-12

2151 Dynamic rewiring of the human interactome by interferon signalling

Kerr, C. H.; Skinnider, M. A.; Madero, A. M.; Andrews, D. D.; Stacey, R. G.; Chan, Q. W.; Stoynov, N.; Jan, E.; Foster, L. J.

10.1101/766808 — systems biology — Posted on 2019-09-12

2152 Learning long temporal sequences in spiking networks by multiplexing neural oscillations

Vincent-Lamarre, P.; Calderini, M.; Thivierge, J.-P.

10.1101/766758 — neuroscience — Posted on 2019-09-12

2153 Basal forebrain parvalbumin neurons mediate arousals from sleep induced by hypercarbia or auditory stimuli

McKenna, J. T.; Thankachan, S.; Uygun, D. S.; Shukla, C.; Cordeira, J.; McNally, J. M.; Katsuki, F.; Zant, J.; Gamble, M. C.; Deisseroth, K.; McCarley, R. W.; Brown, R. E.; Strecker, R. E.; Basheer, R.

10.1101/766659 — neuroscience — Posted on 2019-09-12

2154 Gaze direction as equilibrium: more evidence from spatial and temporal aspects of small-saccade triggering in the rhesus macaque monkey

Hafed, Z. M.; Goffart, L.

10.1101/766212 — neuroscience — Posted on 2019-09-12

2155 Interplay between persistent activity and activity-silent dynamics in prefrontal cortex during working memory

Barbosa, J.; Stein, H.; Martinez, R.; Galan, A.; Adam, K.; Li, S.; Valls-Sole, J.; Constantinidis, C.; Compte, A.

10.1101/763938 — neuroscience — Posted on 2019-09-12

2156 Transcriptomic analysis of native versus cultured human and mouse dorsal root ganglia focused on pharmacological targets

Wangzhou, A.; McIlvried, L. A.; Paige, C.; Barragan-Iglesias, P.; Guzman, C. A.; Dussor, G.; Ray, P. R.; Gereau, R.; Price, T. J.

10.1101/766865 — neuroscience — Posted on 2019-09-12

2157 Deletion of a non-canonical promoter regulatory element causes loss of Scn1a expression and epileptic phenotypes in mice

Haigh, J. L.; Adhikari, A.; Copping, N. A.; Stradleigh, T. W.; Wade, A. A.; Catta-Preta, R. F.; Su-Feher, L.; Zdilar, I.; Morse, S. J.; Fenton, T. A.; Nguyen, A. B.; Quintero, D. M.; Sramek, M.; Carter, J. L.; Gompers, A.; Lambert, J. T.; Canales, C. P.; Pennacchio, L.; Visel, A.; Dickel, D.; Silverman, J. L.; Nord, A. S.

10.1101/766634 — neuroscience — Posted on 2019-09-12

2158 LITE-1 Mediates X-ray Avoidance Response in C. elegans

Cannon, K. E.; Ranasinghe, M.; Do, A.; Pierce, H. M.; Millhouse, P. W.; Roychowdhury, A.; Foulger, S. H.; Dobrunz, L. E.; Anker, J. N.; Bolding, M.

10.1101/766568 — neuroscience — Posted on 2019-09-12

2159 Diversity of Archaea Domain in Cuatro Cienegas Basin: Archaean Domes.

Medina-Chavez, N. O.; Viladomat-Jasso, M.; Olmedo, G.; Eguiarte, L. E.; Souza, V. O.; DE LA TORRE-ZAVALA, S.

10.1101/766709 — microbiology — Posted on 2019-09-12

2160 Susceptibility rhythm to bacterialendotoxin in myeloid clock-knockout mice

Lang, V.; Ferencik, S.; Ananthasubramaniam, B.; Kramer, A.; Maier, B.

10.1101/766519 — immunology — Posted on 2019-09-12

2161 A diet-dependent enzyme from the human gut microbiome promotes Th17 accumulation and colitis

Alexander, M.; Ang, Q. Y.; Turnbaugh, P. J.

10.1101/766899 — immunology — Posted on 2019-09-12

2162 European maize genomes unveil pan-genomic dynamics of repeats and genes

Mayer, K. F. X.

10.1101/766444 — genomics — Posted on 2019-09-12

2163 Genetic \"General Intelligence,\" Objectively Determined and Measured

de la Fuente, J.; Davies, G.; Grotzinger, A. D.; Tucker-Drob, E. M.; Deary, I. M.

10.1101/766600 — genetics — Posted on 2019-09-12

2164 PINK1-dependent phosphorylation of Serine111 within the SF3 motif of Rab GTPases impairs effector interactions and LRRK2 mediated phosphorylation at Threonine72

Vieweg, S.; Mulholland, K.; Braeuning, B.; Kachariya, N.; Lai, Y.-C.; Toth, R.; Sattler, M.; Groll, M.; Itzen, A.; Muqit, M.

10.1101/764019 — biochemistry — Posted on 2019-09-12

2165 A combined RNA-seq and whole genome sequencing approach for identification of non-coding pathogenic variants in single families.

Bronstein, R.; Capowski, E. E.; Mehrotra, S.; Jansen, A. D.; Navarro-Gomez, D.; Maher, M.; Place, E.; Sangermano, R.; Bujakowska, K. M.; Gamm, D. M.; Pierce, E. A.

10.1101/766717 — genetics — Posted on 2019-09-12

2166 Adeno-Associated Virus Technologies and Methods for Targeted Neuronal Manipulation

Haery, L.; Deverman, B. E.; Matho, K.; Cetin, A. H.; Woodard, K.; Cepko, C.; Guerin, K. I.; Rego, M. A.; Ersing, I.; Bachle, S. M.; Kamens, J.; Fan, M.

10.1101/759936 — neuroscience — Posted on 2019-09-12

2167 ERM-Dependent Assembly of T-Cell Receptor Signaling and Co-stimulatory Molecules on Microvilli Prior to Activation

Ghosh, S.; Di Bartolo, V.; Tubul, L.; Shimoni, E.; Kartvelishvily, E.; Dadosh, T.; W. Feigelson, S.; Alon, R.; Alcover, A.; Haran, G.

10.1101/766196 — immunology — Posted on 2019-09-12

2168 WormQTL2: an interactive platform for systems genetics in Caenorhabditis elegans

Snoek, B. L.; Sterken, M. G.; Hartanto, M.; van Zuilichem, A.-J.; Kammenga, J. E.; de Ridder, D.; Nijveen, H.

10.1101/766386 — genetics — Posted on 2019-09-12

2169 Independent Recruitment of the Mediator Tail Module to the HO Promoter Suggests Mediator Core Limits Coactivator Recruitment in Saccharomyces cerevisiae

Yarrington, R. M.; Yu, Y.; Yan, C.; Bai, L.; Stillman, D. J.

10.1101/766006 — genetics — Posted on 2019-09-12

2170 Plant respiration: controlled by photosynthesis or biomass?

Collalti, A.; Tjoelker, M.; Hoch, G.; Makela, A.; Guidolotti, G.; Heskel, M.; Petit, G.; Ryan, M.; Battipaglia, G.; Prentice, I. C.

10.1101/705400 — ecology — Posted on 2019-09-12

2171 A new local covariance matrix estimation for the classification of gene expression profiles in RNA-Seq data

Kochan, N.; Tutuncu, G. Y.; Giner, G.

10.1101/766402 — bioinformatics — Posted on 2019-09-12

2172 Rational thoughts in neural codes

Wu, Z.; Kwon, M.; Daptardar, S.; Schrater, P. R.; Pitkow, X. S.

10.1101/765867 — neuroscience — Posted on 2019-09-12

2173 Application of long-interval paired-pulse transcranial magnetic stimulation to motion-sensitive visual cortex does not lead to changes in motion perception

Gamboa, O. L.; Brito, A.; Abzug, Z. M.; DArbeloff, T.; Beynel, L.; Wing, E. A.; Dannhauer, M.; Palmer, H.; Hilbig, S. A.; Crowell, C. A.; Donaldson, R.; Cabeza, R.; Davis, S. W.; Peterchev, A. V.; Sommer, M. A.; Appelbaum, L. G.

10.1101/766428 — neuroscience — Posted on 2019-09-12

2174 Systemic Infection Facilitates Transmission of Pseudomonas aeruginosa

Bachta, K. E. R.; Allen, J. P.; Cheung, B. H.; Chiu, C.-H.; Hauser, A. R.

10.1101/765339 — microbiology — Posted on 2019-09-12

2175 Long transposon-rich centromeres in an oomycete reveal divergence of centromere features in Stramenopila-Alveolata-Rhizaria lineages

Fang, Y.; Coelho, M. A.; Shu, H.; Schotanus, K.; Thimmappa, B. C.; Yadav, V.; Chen, H.; Malc, E. P.; Wang, J.; Mieczkowski, P.; Kronmiller, B.; Tyler, B. M.; Sanyal, K.; Dong, S.; Nowrousian, M.; Heitman, J.

10.1101/765032 — microbiology — Posted on 2019-09-12

2176 Factors that influence the thymic selection of CD8αα intraepithelial lymphocytes

Kurd, N. S.; Hoover, A.; Yoon, J.; Weist, B. M.; Robey, E. A.

10.1101/761601 — immunology — Posted on 2019-09-12

2177 The developing Human Connectome Project (dHCP) automated resting-state functional processing framework for newborn infants.

Fitzgibbon, S. P.; Harrison, S. J.; Jenkinson, M.; Baxter, L.; Robinson, E. C.; Bastiani, M.; Bozek, J.; Karolis, V.; Cordero Grande, L.; Price, A. N.; Hughes, E.; Makropoulos, A.; Passerat-Palmbach, J.; Schuh, A.; Gao, J.; Farahibozorg, S.-R.; O'Muircheartaigh, J.; Ciarrusta, J.; O'Keeffe, C.; Brandon, J.; Arichi, T.; Rueckert, D.; Hajnal, J. V.; Edwards, A. D.; Smith, S. M.; Duff, E.; Andersson, J.

10.1101/766030 — neuroscience — Posted on 2019-09-12

2178 Right on time: prediction-errors bidirectionally bias time perception

Toren, I.; Aberg, K.; Paz, R.

10.1101/766204 — neuroscience — Posted on 2019-09-12

2179 The type IV pilin PilA couples surface attachment and cell cycle initiation in Caulobacter crescentus

Del Medico, L.; Cerletti, D.; Christen, M.; Christen, B.

10.1101/766329 — microbiology — Posted on 2019-09-12

2180 A single-cell and single-nucleus RNA-seq toolbox for fresh and frozen human tumors

Slyper, M.; Porter, C. B. M.; Ashenberg, O.; Waldman, J.; Drokhlyansky, E.; Wakiro, I.; Smillie, C.; Smith-Rosario, G.; Wu, J.; Dionne, D.; Vigneau, S.; Jane-Valbuena, J.; Napolitano, S.; Su, M.-J.; Patel, A. G.; Karlstrom, A.; Gritsch, S.; Nomura, M.; Waghray, A.; Gohil, S. H.; Tsankov, A. M.; Jerby-Arnon, L.; Cohen, O.; Klughammer, J.; Rosen, Y.; Gould, J.; Li, B.; Nguyen, L.; Wu, C. J.; Izar, B.; Haq, R.; Hodi, F. S.; Yoon, C. H.; Hata, A. N.; Baker, S. J.; Suva, M. L.; Bueno, R.; Stover, E. H.; Matulonis, U. A.; Clay, M. R.; Dyer, M. A.; Collins, N. B.; Wagle, N.; Rotem, A.; Johnson, B. E.

10.1101/761429 — genomics — Posted on 2019-09-12

2181 Accumulation of genetic variants associated with immunity in the selective breeding of broilers

Zou, A.; Nadeau, K.; Wang, P. W.; Lee, J. Y.; Guttman, D. S.; Sharif, S.; Korver, D.; Brumell, J. H.; Parkinson, J.

10.1101/763656 — genomics — Posted on 2019-09-12

2182 Aβ(1-42) tetramer and octamer structures reveal edge pores as a mechanism for membrane damage

Ciudad, S.; Puig, E.; Botzanowski, T.; Meigooni, M.; Arango, A. S.; Do, J.; Mayzel, M.; Bayoumi, M.; Chaignepain, S.; Maglia, G.; Cianferani, S.; Orekhov, V.; Tajkhorshid, E.; Bardiaux, B.; Carulla, N.

10.1101/759472 — biophysics — Posted on 2019-09-12

2183 An RNA-seq quantification method for analysis of transcriptional aberrations

Kuwahara, H.; Alkuraya, F.; Gao, X.

10.1101/766121 — bioinformatics — Posted on 2019-09-12

2184 The L-alanosine gene cluster encodes a pathway for diazeniumdiolate biosynthesis

Ng, T. L.; McCallum, M. E.; Zheng, C. R.; Wang, J. X.; Wu, K. J. Y.; Balskus, E. P.

10.1101/763607 — biochemistry — Posted on 2019-09-12

2185 Regulation of starvation-mediated hyperactivity and triglyceride metabolism by Short neuropeptide F and Insulin Like Peptide in Drosophila

N Kannan, N. N.; Kujur, A. E.; Pathak, H.; Geo, A.; Sudhakar, S. R.

10.1101/764688 — animal behavior and cognition — Posted on 2019-09-12

2186 LncRNA-UCA1 inhibits the astrocyte activation in the temporal lobe epilepsy via regulating JAK/STAT signaling pathway

Wang, H.; Yao, G.; Li, L.; Ma, Z.; Chen, J.; Chen, W.

10.1101/765982 — neuroscience — Posted on 2019-09-12

2187 Evaluation of six phase encoding based susceptibility distortion correction methods for diffusion MRI

Gu, X.; Eklund, A.

10.1101/766139 — neuroscience — Posted on 2019-09-12

2188 Yeast single cell protein production from a biogas co-digestion substrate

Ohlsson, J. A.; Olstorpe, M.; Passoth, V.; Leong, S.-l. L.

10.1101/766345 — microbiology — Posted on 2019-09-12

2189 Molecular architecture of the DNA-binding sites of the P-loop ATPases MipZ and ParA from Caulobacter crescentus

Refes, Y.; He, B.; Corrales-Guerrero, L.; Steinchen, W.; Panis, G.; Viollier, P. H.; Bange, G.; Thanbichler, M.

10.1101/766287 — microbiology — Posted on 2019-09-12

2190 The rise and fall of the new variant of Chlamydia trachomatis in Sweden: mathematical modelling study

Smid, J.; Althaus, C. L.; Low, N.; Unemo, M.; Herrmann, B.

10.1101/572107 — epidemiology — Posted on 2019-09-12

2191 SET8 localization to chromatin flanking DNA damage is dependent on RNF168 ubiquitin ligase

Dulev, S.; Lin, S.; Cetintas, V.; Batada, N. N.

10.1101/766147 — cell biology — Posted on 2019-09-12

2192 One-Shot phase-recovery using a Cellphone RGB Camera on a Jamin-Lebedeff Microscope

Diederich, B.; Marsikova, B.; Amos, B.; Heintzmann, R.

10.1101/765958 — bioinformatics — Posted on 2019-09-12

2193 Predicting Adverse Drug-Drug Interactions with Neural Embedding of Semantic Predications

Burkhardt, H. A.; Subramanian, D.; Mower, J.; Cohen, T.

10.1101/752022 — bioinformatics — Posted on 2019-09-12

2194 Subpopulation identification for single-cell RNA-sequencing data using functional data analysis

Ahn, K.; Fujiwara, H.

10.1101/760413 — bioinformatics — Posted on 2019-09-12

2195 Bicistronic expression and differential localization of proteins in insect cells and Drosophila suzukii using picornaviral 2A peptides

Schwirz, J.; Yan, Y.; Franta, Z.; Schetelig, M. F.

10.1101/766188 — bioengineering — Posted on 2019-09-12

2196 Click by Click Microporous Annealed Particle (MAP) Scaffolds

Darling, N. J.; Xi, W.; Sideris, E.; Anderson, A. R.; Pong, C.; Carmichael, S. T.; Segura, T.

10.1101/765529 — bioengineering — Posted on 2019-09-12

2197 A locked immunometabolic switch underlies TREM2 R47H loss of function in human iPSC--derived microglia

Piers, T. M.; Cosker, K.; Mallach, A.; Thomas Johnson, G.; Guerreiro, R.; Hardy, J.; Pocock, J. M.

10.1101/766089 — neuroscience — Posted on 2019-09-12

2198 Severity of early life stress moderates the effect of fine particle air pollution on adolescent brain development

Miller, J. G.; Dennis, E. L.; Jo, B.; Gotlib, I. H.

10.1101/763896 — neuroscience — Posted on 2019-09-12

2199 Resolving the fibrotic niche of human liver cirrhosis using single-cell transcriptomics

Ramachandran, P.; Dobie, R.; Wilson-Kanamori, J. R.; Dora, E. F.; Henderson, B. E.; Taylor, R. S.; Matchett, K. P.; Portman, J. R.; Efremova, M.; Vento-Tormo, R.; Luu, N. T.; Weston, C. J.; Newsome, P. N.; Harrison, E. M.; Mole, D. J.; Wigmore, S. J.; Iredale, J. P.; Tacke, F.; Pollard, J. W.; Ponting, C. P.; Marioni, J.; Teichmann, S. A.; Henderson, N. C.

10.1101/766113 — immunology — Posted on 2019-09-12

2200 Ancient DNA reconstructs the genetic legacies of pre-contact Puerto Rico communities

Nieves-Colon, M. A.; Pestle, W. J.; Reynolds, A. W.; Llamas, B.; de la Fuente, C.; Fowler, K.; Skerry, K.; Crespo-Torres, E.; Bustamante, C. D.; Stone, A. C.

10.1101/765685 — genomics — Posted on 2019-09-12

2201 RNA Helicase DDX5 Negatively Regulates Wnt Signaling and Hepatocyte Reprogramming in Hepatitis B Virus-related Hepatocellular Carcinoma

Kailasam Mani, S. K.; Cui, Z.; Yan, B.; Utturkar, S.; Foca, A.; Fares, N.; Durantel, D.; Lanman, N.; Merle, P.; Kazemian, M.; Andrisani, O.

10.1101/765388 — cancer biology — Posted on 2019-09-12

2202 Escalating protein supersaturation underlies inclusion formation in muscle proteinopathies

Ciryam, P.; Antalek, M.; Samper, F. C.; Tartaglia, G.; Dobson, C. M.; Guettsches, A.-K.; Eggers, B.; Vorgerd, M.; Marcus, K.; Kley, R.; Morimoto, R.; Vendruscolo, M.; Weihl, C. C.

10.1101/762245 — biophysics — Posted on 2019-09-12

2203 β-cells operate collectively to help maintain glucose homeostasis

Podobnik, B.; Korosak, D.; Skelin Klemen, M.; Stozer, A.; Dolensek, J.; Slak Rupnik, M.; Ivanov, P. C.; Holme, P.; Jusup, M.

10.1101/765933 — biophysics — Posted on 2019-09-12

2204 Equivalent Change Enrichment Analysis: Assessing Equivalent and Inverse Change in Genes and Biological Pathways between Diverse Experiments

Thompson, J. A.; Koestler, D. C.

10.1101/586875 — bioinformatics — Posted on 2019-09-12

2205 An environmental DNA tool for monitoring the status of the Critically Endangered Smalltooth Sawfish, Pristis pectinata, in the Western Atlantic

Lehman, R. N.; Poulakis, G. R.; Scharer, R. M.; Schweiss, K. E.; Hendon, J. M.; Phillips, N. M.

10.1101/765321 — ecology — Posted on 2019-09-12

2206 Generation and characterisation of an estrogen receptor-positive GEMM-derived Pten p53 null transplantable breast tumour model for therapeutic testing

Davies, E. J.; Morgan, H.; Tornillo, G.; Chabbert, C.; Kendrick, H.; Ahdesmaki, M. J.; Luke, S.; Barry, S. T.; Smalley, M. J.

10.1101/762047 — cancer biology — Posted on 2019-09-12

2207 MicroRNA-194 promotes lineage plasticity in advanced prostate cancer

Fernandes, R. C.; Toubia, J.; Townley, S.; Hanson, A. R.; Dredge, B. K.; Pillman, K. A.; Bert, A. G.; Iggo, R.; Das, R.; MURAL investigators, ; Obinata, D.; Sandhu, S.; Risbridger, G. P.; Taylor, R. A.; Lawrence, M. G.; Butler, L. M.; Zoubeidi, A.; Gregory, P.; Tilley, W. D.; Hickey, T.; Goodall, G. J.; Selth, L.

10.1101/752709 — cancer biology — Posted on 2019-09-12

2208 Establishing the role of SINE proteins in regulating stomatal dynamics in Arabidopsis thaliana

Biel, A.; Moser, M.; Meier, I.

10.1101/759712 — plant biology — Posted on 2019-09-12

2209 Plastidial (p)ppGpp synthesis by the Ca2+-dependent RelA-SpoT homolog regulates the adaptation of chloroplast gene expression to darkness in Arabidopsis

Ono, S.; Suzuki, S.; Ito, D.; Tagawa, S.; Shiina, T.; MASUDA, S.

10.1101/767004 — plant biology — Posted on 2019-09-12

2210 Pectin methylesterase selectively softens the onion epidermal wall yet reduces acid-induced creep

Wang, X.; Cosgrove, D. J.

10.1101/766931 — plant biology — Posted on 2019-09-12

2211 Dynamics of genome architecture and chromatin function during human B cell differentiation and neoplastic transformation

Vilarrasa-Blasi, R.; Soler-Vila, P.; Verdaguer-Dot, N.; Russinol, N.; Di Stefano, M.; Chapaprieta, V.; Clot, G.; Farabella, I.; Cusco, P.; Agirre, X.; Prosper, F.; Beekman, R.; Bea, S.; Colomer, D.; Gut, I. G.; Stunnenberg, H. G.; Campo, E.; Marti-Renom, M. A.; Martin-Subero, J. I.

10.1101/764910 — genomics — Posted on 2019-09-12

2212 Direction-Averaged Diffusion-Weighted MRI Signal using Different B-Tensor Encoding Schemes

Afzali, M.; Aja-Fernandez, S.; Jones, D. K.

10.1101/722421 — bioengineering — Posted on 2019-09-12

2213 Interplay between metrical and semantic processing in French: an N400 study.

te Rietmolen, N.; El Yagoubi, R.; Astesano, C.

10.1101/738930 — neuroscience — Posted on 2019-09-12

2214 Fluctuating pathogen-mediated selection favours the maintenance of innate immune gene polymorphism in a widespread wild ungulate

Quemere, E.; Hessenauer, P.; Galan, M.; Fernandez, M.; Merlet, J.; Chaval, Y.; Hewison, A. J. M.; Morellet, N.; Verheyden, H.; Gilot Fromont, E.; Charbonnel, N.

10.1101/458216 — evolutionary biology — Posted on 2019-09-12

2215 Genome-wide changes in genetic diversity in a population of Myotis lucifugus affected by white-nose syndrome

Lilley, T.; Wilson, I.; Field, K. A.; Reeder, D. M.; Turner, G. G.; Kurta, A.; Blomberg, A. S.; Hoff, S.; Herzog, C.; Paterson, S.

10.1101/764647 — evolutionary biology — Posted on 2019-09-12

2216 NRP2 as an emerging angiogenic player; promoting endothelial cell adhesion and migration by regulating recycling of α5 integrin.

Alghamdi, A. A.; Benwell, C. J.; Atkinson, S. J.; Lambert, J.; Robinson, S. D.

10.1101/744763 — cell biology — Posted on 2019-09-12

2217 LFMD: detecting low-frequency mutations in genome sequencing data without molecular tags

Ye, R.; Ruan, J.; Zhuang, X.; Qi, Y.; An, Y.; Xu, J.; Mak, T.; Liu, X.; Zhang, X.; Yang, H.; Xu, X.; Baum, L.; Nie, C.; Sham, P. C.

10.1101/617381 — bioinformatics — Posted on 2019-09-12

2218 A Targeted Mass Spectrometry Approach to detect and quantify Oxidised Phospholipids in plasma samples of Diabetic patients

Thakker, A.; Spickett, C.; Pitt, A.

10.1101/741132 — biochemistry — Posted on 2019-09-12

2219 Serial coupling of chromatographic columns having orthogonal selectivity to improve the coverage of oxidised lipidome for mass spectrometry analysis

Thakker, A.; Spickett, C.; Pitt, A.

10.1101/741579 — biochemistry — Posted on 2019-09-12

2220 Sex-biased gene expression is repeatedly masculinized in asexual females

Parker, D. J.; Bast, J.; Jalvingh, K.; Dumas, Z.; Robinson-Rechavi, M.; Schwander, T.

10.1101/553172 — evolutionary biology — Posted on 2019-09-12

2221 Intraspecific variation alters ecosystem and next-generation performance as much as temperature

Raffard, A.; Cucherousset, J.; Santoul, F.; Di Gesu, L.; Blanchet, S.

10.1101/332619 — ecology — Posted on 2019-09-12

2222 High order structure in mouse courtship vocalizations

Hertz, S.; Weiner, B.; Perets, N.; London, M.

10.1101/728477 — bioinformatics — Posted on 2019-09-12

2223 Protein secondary structure determines the temporal relationship between folding and disulfide formation

Robinson, P.; Kanemura, S.; Cao, X.; Bulleid, N.

10.1101/564740 — biochemistry — Posted on 2019-09-12

2224 A tissue-like platform for studying engineered quiescent human T-cells’ interactions with dendritic cells

Abu-Shah, E.; Demetriou, P.; Balint, S.; Mayya, V.; Kutuzov, M. A.; Dushek, O.; Dustin, M. L.

10.1101/587386 — immunology — Posted on 2019-09-12

2225 Non-Parametric Analysis of Thermal Proteome Profiles Reveals Novel Drug-Binding Proteins

Childs, D.; Bach, K.; Franken, H.; Anders, S.; Kurzawa, N.; Bantscheff, M.; Savitski, M.; Huber, W.

10.1101/373845 — bioinformatics — Posted on 2019-09-12

2226 Giraffe Translocation Population Viability Analysis

Lee, D. E.; Fienieg, E.; van Oosterhout, C.; Muller, Z.; Strauss, M.; Carter, K.; Scheijen, C.; Deacon, F.

10.1101/619114 — ecology — Posted on 2019-09-12

2227 Molecular motor organization and mobility on cargos can overcome a tradeoff between fast binding and run length

Bovyn, M.; Gross, S.; Allard, J.

10.1101/686147 — cell biology — Posted on 2019-09-11

2228 Acid-Sensing Ion Channels Mediate Type III Adenylyl Cyclase-Independent Acid-Sensing of Mouse Olfactory Sensory Neurons

Yang, J.; Qiu, L.; Strobel, M.; Kabel, A.; Zha, X.; Chen, X.

10.1101/765420 — neuroscience — Posted on 2019-09-11

2229 Heritable gene expression variability governs clonal heterogeneity in circadian period

Nikhil, K. L.; Korge, S.; Kramer, A.

10.1101/731075 — cell biology — Posted on 2019-09-11

2230 Dynamic clustering regulates activity of mechanosensitive membrane channels

Paraschiv, A.; Hegde, S.; Ganti, R.; Pilizota, T.; Saric, A.

10.1101/553248 — biophysics — Posted on 2019-09-11

2231 immuneSIM: tunable multi-feature simulation of B- and T-cell receptor repertoires for immunoinformatics benchmarking

Weber, C. R.; Akbar, R.; Yermanos, A.; Pavlovic, M.; Snapkov, I.; Sandve, G. K.; Reddy, S. T.; Greiff, V.

10.1101/759795 — bioinformatics — Posted on 2019-09-11

2232 Horse gluteus is a null-sarcolipin muscle with enhanced sarcoplasmic reticulum calcium transport

Autry, J. M.; Karim, C. B.; Svensson, B.; Carlson, S. F.; Cocco, M.; Perumbakkam, S.; Chen, Z.; Espinoza-Fonseca, L. M.; Finno, C. J.; Thomas, D. D.; Valberg, S. J.

10.1101/688531 — biochemistry — Posted on 2019-09-11

2233 On the relative ease of speciation with periodic gene flow

Linck, E.; Battey, C. J.

10.1101/758664 — evolutionary biology — Posted on 2019-09-11

2234 Combined mRNA and protein single cell analysis in a dynamic cellular system using SPARC

Reimegard, J.; Danielsson, M.; Tarbier, M.; Schuster, J.; Baskaran, S.; Panagiotou, S.; Dahl, N.; Friedlander, M. R.; Gallant, C. J.

10.1101/749473 — cell biology — Posted on 2019-09-11

2235 Single cell transcriptomics identifies a unique adipocyte population that regulates bone marrow environment

Zhong, L.; Yao, L.; Tower, R. J.; Wei, Y.; Miao, Z.; Park, J.; Shrestha, R.; Wang, L.; Yu, W.; Holdreith, N.; Zhang, Y.; Tong, W.; Gong, Y.; Long, F.; Ahn, J.; Seale, P.; Susztak, K.; Li, M.; Chen, C.; Qin, L.

10.1101/754481 — cell biology — Posted on 2019-09-11

2236 A unified simulation model for understanding the diversity of cancer evolution

Niida, A.; Hasegawa, T.; Shibata, T.; Mimori, K.; Miyano, S.

10.1101/762997 — cancer biology — Posted on 2019-09-11

2237 Single-cell RNAseq uncovers involution mimicry as an aberrant development pathway during breast cancer metastasis

Valdes-Mora, F.; Salomon, R.; Gloss, B. S.; Law, A. M.; Murphy, K.; Roden, D. L.; Castillo, L.; Colino-Sanguino, Y.; Kikhtyak, Z.; Farbehi, N.; Conway, J. R.; Oakes, S. R.; Sikta, N.; O'Donoghue, S.; Cox, T.; Timpson, P.; Ormandy, C. J.; Gallego-Ortega, D.

10.1101/624890 — cancer biology — Posted on 2019-09-11

2238 Bayesian hierarchical models for disease mapping applied to contagious pathologies

Coly, S.; Garrido, M.; Abrial, D.; Yao, A.-F.

10.1101/766071 — scientific communication and education — Posted on 2019-09-11

2239 Aquatic Elusimicrobia are metabolically diverse compared to gut microbiome Elusimicrobia and some have novel nitrogenase-like gene clusters

Meheust, R.; Castelle, C. J.; Matheus Carnevali, P. B.; Farag, I.; He, C.; Chen, L.-X.; Amano, Y.; Hug, L. A.; Banfield, J. F.

10.1101/765248 — microbiology — Posted on 2019-09-11

2240 Functional divergence and potential mechanisms of the duplicate recA genes in Myxococcus xanthus

Li, Y.-z.; Sheng, D.-h.; Wang, Y.-x.; Qiu, M.; Zhao, J.-y.; Yue, X.-j.

10.1101/766055 — genetics — Posted on 2019-09-11

2241 JAM-A functions as a female microglial tumor suppressor in glioblastoma

Turaga, S. M.; Silver, D. J.; Bayik, D.; Paouri, E.; Peng, S.; Borjini, N.; Stanko, S.; Naik, U.; Keri, R. A.; Connor, J. R.; Barnholtz-Sloan, J.; Rubin, J. B.; Berens, M.; Davalos, D.; Lathia, J.

10.1101/761445 — cancer biology — Posted on 2019-09-11

2242 Augmenting propulsion demands during split-belt walking increases locomotor adaptation in the asymmetric motor system

Sombric, C.; Torres-Oviedo, G.

10.1101/734749 — bioengineering — Posted on 2019-09-11

2243 Effects of Post-Activation Potentiation induced by a plyometric protocol on deceleration performance.

Ciocca, G.; Tschan, H.; Tessitore, A.

10.1101/766097 — physiology — Posted on 2019-09-11

2244 Adaptive Deep Brain Stimulation as an Advanced Parkinson’s disease Treatment (ADAPT): a pseudorandomised clinical trial

Pina-Fuentes, D.; van Dijk, M. J. M. C.; van Zijl, J. C.; Moes, H. R.; Oterdoom, M. D. L. M.; Little, S.; Brown, P.; Beudel, M.

10.1101/749903 — neuroscience — Posted on 2019-09-11

2245 The effects of carnosine pretreatment on the inflammatory response and the PI3K/Akt signaling pathway following hypoxia-ischemia in neonatal rats

Zhang, M. X.; Xia, L.; Huang, Z.; Xu, F.

10.1101/766063 — neuroscience — Posted on 2019-09-11

2246 Spatial structure undermines parasite suppression by gene drive cargo

Bull, J. J.; Remien, C. H.; Gomuliiewicz, R.; Krone, S. M.

10.1101/728006 — evolutionary biology — Posted on 2019-09-11

2247 Effective strategies for preventing reestablishment of malaria in areas with recent elimination and high transmission potential

Gerardin, J.; Bever, C. A.; Bridenbecker, D.; Eisele, T. P.; Hamainza, B.; Miller, J. M.; Wenger, E. A.

10.1101/766048 — ecology — Posted on 2019-09-11

2248 Single-cell resolution view of the transcriptional landscape of developing Drosophila eye.

Ejsmont, R. K.; Houser, G.; Mora Garcia, N.; Fonseca-Topp, S.; Danda, N.; Wong-Chung, A.; Hassan, B. A.

10.1101/763243 — developmental biology — Posted on 2019-09-11

2249 Modeling Mayaro and Chikungunya Control Strategies in Rio de Janeiro Outbreaks

Dodero-Rojas, E.; Ferreira, L. G.; Leite, V. B. P.; Onuchic, J. N.; Contessoto, V. d. G.

10.1101/766105 — biophysics — Posted on 2019-09-11

2250 Unexpected Dynamics in the UUCG RNA Tetraloop

Bottaro, S.; Nichols, P. J.; Vogeli, B.; Parrinello, M.; Lindorff-Larsen, K.

10.1101/690412 — biophysics — Posted on 2019-09-11

2251 Transcriptomic learning for digital pathology

Schmauch, B.; Romagnoni, A.; Pronier, E.; Saillard, C.; Maille, P.; Calderaro, J.; Sefta, M.; Toldo, S.; Clozel, T.; Moarii, M.; Courtiol, P.; Wainrib, G.

10.1101/760173 — bioinformatics — Posted on 2019-09-11

2252 Diauxie and co-utilization are not exclusive during growth in nutritionally complex environments

Perrin, E.; Giovannini, M.; Di Patti, F.; Cardazzo, B.; Carraro, L.; Fagorzi, C.; Ghini, V.; Turano, P.; Fani, R.; Fondi, M.

10.1101/752832 — systems biology — Posted on 2019-09-11

2253 Optic flow helps explain gulls’ altitude control over seas

Serres, J. R.; Evans, T. J.; Akesson, S.; Duriez, O.; Shamoun-Baranes, J. Z.; Ruffier, F.; Hedenstrom, A.

10.1101/569194 — neuroscience — Posted on 2019-09-11

2254 The nonlinear structure of linkage disequilibrium

Smith, R. D.

10.1101/566208 — genetics — Posted on 2019-09-11

2255 Maternal glucocorticoids promote offspring growth without inducing oxidative stress or shortening telomeres in wild red squirrels

Dantzer, B.; van Kesteren, F.; Westrick, S. E.; Boutin, S.; McAdam, A. G.; Lane, J. E.; Gillespie, R.; Majer, A.; Haussmann, M.; Monaghan, P.

10.1101/680421 — evolutionary biology — Posted on 2019-09-11

2256 Genetic screening for single-cell variability modulators driving therapy resistance

Torre, E. A.; Arai, E.; Bayatpour, S.; Beck, L. E.; Emert, B. L.; Shaffer, S. M.; Mellis, I. A.; Fane, M.; Alicea, G.; Budinich, K. A.; Weeraratna, A.; Shi, J.; Raj, A.

10.1101/638809 — cell biology — Posted on 2019-09-11

2257 Influence of multiple hypothesis testing on reproducibility in neuroimaging research

Puolivali, T.; Palva, S.; Palva, J. M.

10.1101/488353 — neuroscience — Posted on 2019-09-11

2258 Variation in genome content and predatory phenotypes between Bdellovibrio sp. NC01 isolated from soil and B. bacteriovorus type strain HD100

Williams, L. E.; Cullen, N.; DeGiorgis, J. A.; Martinez, K. J.; Mellone, J.; Oser, M.; Wang, J.; Zhang, Y.

10.1101/551937 — microbiology — Posted on 2019-09-11

2259 Continual evolution through coupled fast and slow feedbacks

Wortel, M. T.; Peters, H.; Bonachela, J. A.; Stenseth, N. C.

10.1101/513416 — evolutionary biology — Posted on 2019-09-11

2260 Epithelial invagination by vertical telescoping

Li, J.; Economou, A. D.; Green, J. B. A.

10.1101/515981 — developmental biology — Posted on 2019-09-11

2261 Exploratory and prospective model of stent restenosis after Percutaneous Coronary Intervention using MultivariateGaussian Subspatial Regression

Vicente-Palacios, V.; Vicente-Tavera, S.; Dorado-Diaz, I.; Sanchez-Puente, A.; Sampedro-Gomez, J.; Galindo, P.; Gomez, I.; San Roman, J. A.; Fernandez-Aviles, F.; Sanchez, P. L.

10.1101/445361 — bioinformatics — Posted on 2019-09-11

2262 Termination of non-coding transcription in yeast relies on both a CTD-interaction domain and a CTD-mimic in Sen1

Han, Z.; Jasnovidova, O.; Tudek, A.; Kubicek, K.; Libri, D.; Stefl, R.; Porrua, O.

10.1101/433045 — genetics — Posted on 2019-09-11

2263 Rapid evolution allows plant communities to regain stability after simulated species loss

van Moorsel, S. J.; Hahl, T.; Petchey, O. L.; Ebeling, A.; Eisenhauer, N.; Schmid, B.; Wagg, C.

10.1101/262337 — ecology — Posted on 2019-09-11

2264 Leveraging genome-wide data to investigate differences between opioid use vs. opioid dependence in 41,176 individuals from the Psychiatric Genomics Consortium

Polimanti, R.; Psychiatric Genomics Consortium Substance Use Disorder Workgroup, ; Edenberg, H. J.; Agrawal, A.; Gelernter, J.

10.1101/765065 — genetics — Posted on 2019-09-11

2265 Dissociating cholinergic influence on alertness andtemporal attention in primates in a simple reaction-timeparadigm

Olah, V.; Knakker, B.; Trunk, A.; Lendvai, B.; Hernadi, I.

10.1101/765883 — animal behavior and cognition — Posted on 2019-09-11

2266 Do TMS evoked responses measured from scalp and hand represent the same cortical mechanisms?

Biabani, M.; Fornito, A.; Coxon, J. P.; Fulcher, B. D.; Rogasch, N. C.

10.1101/765875 — neuroscience — Posted on 2019-09-11

2267 Galectin-3 as a new negative checkpoint of the immune response is the key target for effective immunotherapy against prostate cancer

Tiraboschi, C.; Gentilini, L.; Corapi, E.; Jaworski, F. M.; Velazquez, C.; Chauchereau, A.; Laderach, D. J.; Compagno, D.

10.1101/763409 — immunology — Posted on 2019-09-11

2268 GLUT1 inhibition blocks growth of RB1-positive Triple Negative Breast Cancer

Wu, Q.; Alawi, W.; Deblois, G.; Cruickshank, J.; Duan, S.; Fernandes, E. L.; Haight, J.; Tonekaboni, S. A.; Fortier, A.; Kuasne, H.; McKee, T.; Mahmoud, H.; Cameron, S.; Artun, N. D.; Chen, W.; Vellanki, R.; Zhou, S.; Done, S. J.; Park, M.; Cescon, D.; Kains, B. H.; Lupien, M.; Arrowsmith, C. H.

10.1101/764944 — cancer biology — Posted on 2019-09-11

2269 Evolutionary insights into PtdIns3P signaling through FYVE and PHOX effector proteins from the moss Physcomitrella patens.

Agudelo-Romero, P.; Fortes, A. M.; Suarez, T.; Lascano, H. R.; Saavedra, L. L.

10.1101/765594 — plant biology — Posted on 2019-09-11

2270 Targeting the Id1-Kif11-Aurka axis in triple negative breast cancer using combination therapy

Murali, R.; Varghese, B. A.; Karthikeyan, N.; T, A. P.; Teo, W. S.; McFarland, A.; Roden, D. L.; Holliday, H.; Konrad, C.; Cazet, A. S.; Dodson, E.; George, J. T.; Levine, H.; Jolly, M. K.; Swarbrick, A.; Nair, R.

10.1101/760686 — cancer biology — Posted on 2019-09-11

2271 Prediction of best features in heterogeneous Lung adenocarcinoma samples using Least Absolute Shrinking and Selection Operator.

Khaliq, A. M.; RG, S.; Rajamohan, M.

10.1101/765792 — bioinformatics — Posted on 2019-09-11

2272 Software as a Service for the Genomic Prediction of Complex Diseases.

Bolli, A.; Di Domenico, P.; Botta, G.

10.1101/763722 — genomics — Posted on 2019-09-11

2273 PARC: ultrafast and accurate clustering of phenotypic data of millions of single cells

stassen, s. V.; Siu, D. M. D.; Lee, K. C. M.; Ho, J. W. K.; So, H. K. H.; Tsia, K.

10.1101/765628 — bioinformatics — Posted on 2019-09-11

2274 Testosterone and cortisol are negatively associated with ritualized bonding behavior in male macaques

Rincon, A. V.; Heistermann, M.; Schuelke, O.; Ostner, J.

10.1101/765123 — animal behavior and cognition — Posted on 2019-09-11

2275 Cross-Sectional and Longitudinal Validation of Serum Neurofilament Light Chain (NfL) as a Biomarker of Parkinson’s Disease Progression

10.1101/762237 — neuroscience — Posted on 2019-09-11

2276 Tradeoff between more cells and higher read depth for single-cell RNA-seq spatial ordering analysis of the liver lobule

Seirup, M.; Chu, L.-F.; Sengupta, S.; Leng, N.; Shafer, C. M.; Duffin, B.; Elwell, A. L.; Bolin, J. M.; Swanson, S.; Stewart, R.; Kendziorski, C.; Thomson, J. A.; Bacher, R.

10.1101/764191 — genomics — Posted on 2019-09-11

2277 An Open Source Mesh Generation Platform for Biophysical Modeling Using Realistic Cellular Geometries

Lee, C. T.; Laughlin, J. G.; Moody, J. B.; Amaro, R. E.; McCammon, J. A.; Holst, M. J.; Rangamani, P.

10.1101/765453 — biophysics — Posted on 2019-09-11

2278 Leveraging Distributed Biomedical Knowledge Sources to Discover Novel Uses for Known Drugs

Womack, F.; McClelland, J.; Koslicki, D.

10.1101/765305 — bioinformatics — Posted on 2019-09-11

2279 Baseline Semantic Fluency Is Associated with Six-Year Progression to Mild Cognitive Impairment in Middle-Aged Men

Gustavson, D. E.; Elman, J. A.; Panizzon, M. S.; Franz, C. E.; Zuber, J.; Sanderson-Cimino, M.; Reynolds, C. A.; Jacobson, K. C.; Xian, H.; Jak, A. J.; Toomey, R.; Lyons, M. J.; Kremen, W. A.

10.1101/659417 — genetics — Posted on 2019-09-11

2280 Using null models to compare bacterial and microeukaryotic metacommunity assembly under shifting environmental conditions

Vass, M.; Szekely, A. J.; Lindström, E. S.; Langenheder, S.

10.1101/752303 — ecology — Posted on 2019-09-11

2281 Species better track the shifting isotherms in the oceans than on lands

Lenoir, J.; Bertrand, R.; Comte, L.; Bourgeaud, L.; Hattab, T.; Murienne, J.; Grenouillet, G.

10.1101/765776 — ecology — Posted on 2019-09-11

2282 Parietal Cortex Integrates Visual and Oculomotor Signals to Update Grasp Plans

Baltaretu, B. R.; Monaco, S.; Velji-Ibrahim, J.; Luabeya, G. N.; Crawford, J. D.

10.1101/758532 — neuroscience — Posted on 2019-09-11

2283 Dynamic arousal signals construct memories of time and events

Clewett, D.; Gasser, C.; Davachi, L.

10.1101/765214 — neuroscience — Posted on 2019-09-11

2284 Acid-Sensing Ion Channels Mediate Type III Adenylyl Cyclase-Independent Acid-Sensing of Mouse Olfactory Sensory Neurons

Yang, J.; Qiu, L.; Strobel, M.; Kabel, A.; Zha, X.; Chen, X.

10.1101/765420 — neuroscience — Posted on 2019-09-11

2285 Interferon stimulated genes mark pathogenic cells of the emergency myelopoietic response to sterile tissue injury in mice and humans

Ng, R.; Calcagno, D. M.; Toomu, A.; Huang, K.; Aguirre, A.; Daniels, L.; Fu, Z.; King, K.

10.1101/765404 — immunology — Posted on 2019-09-11

2286 Using synthetic datasets to better understand and explain health outcomes associated with common single nucleotide polymorphisms

Wood, T. R.; Owens, N.

10.1101/765586 — genetics — Posted on 2019-09-11

2287 Tooth Shape Adaptations in Aglyphous Colubrid Snakes Inferred from 3D Geometric Morphometrics and Finite Element Analysis

Rajabizadeh, M.; Wassenbergh, S. V.; Mallet, C.; Rucklin, M.; Herrel, A.

10.1101/765719 — evolutionary biology — Posted on 2019-09-11

2288 ECM-body: A cell-free 3D biomimetic scaffold derived from intact planarian body

Sonpho, E.; Wootthichairangsan, C.; Ishida, M.; Inoue, T.; Agata, K.; Maleehuan, A.; Charngkaew, K.; Chomanee, N.; Moonsom, S.; Wongtrakoongate, P.; Chairoungdua, A.; Ounjai, P.

10.1101/763714 — developmental biology — Posted on 2019-09-11

2289 Search as a simple take-the-best heuristic

Yahosseini, K. S.; Moussaid, M.

10.1101/765107 — animal behavior and cognition — Posted on 2019-09-11

2290 A Virtual Nodule Environment (ViNE) for modelling the inter-kingdom metabolic integration during symbiotic nitrogen fixation

diCenzo, G. C.; Tesi, M.; Pfau, T.; Mengoni, A.; Fondi, M.

10.1101/765271 — systems biology — Posted on 2019-09-11

2291 Extensive memory testing improves prediction of progression to MCI in late middle age

Gustavson, D. E.; Elman, J. A.; Sanderson-Cimino, M.; Franz, C. E.; Panizzon, M. S.; Jak, A. J.; Reynolds, C. A.; Neale, M. C.; Lyons, M. J.; Kremen, W. S.

10.1101/584193 — pathology — Posted on 2019-09-11

2292 Short-term effects on brain functional network caused by focused-attention meditation revealed by Tucker3 clustering on graph theoretical metrics

Miyoshi, T.; Tanioka, K.; Yamamoto, S.; Yadohisa, H.; Hiroyasu, T.; Hiwa, S.

10.1101/765693 — neuroscience — Posted on 2019-09-11

2293 Expression of endoplasmic reticulum mannosyl-oligosaccharide α1, 2-mannosidase regulates tumorigenicity of prostate cancer cells

Toonstra, C.; Wang, X.; Höti, N.; Pan, J.; Zhang, h.

10.1101/750984 — cancer biology — Posted on 2019-09-11

2294 Systematic Pan-Cancer Analysis Reveals the Functional Roles of Ferroptosis Across Cancers

Liu, Z.; Zhao, Q.; Zuo, Z.; Yu, K.; Zhang, Q.; Zhang, X.; Sheng, H.; Ju, H.-Q.; Xu, R.-H.; Liu, Z.-X.

10.1101/765826 — cancer biology — Posted on 2019-09-11

2295 PolySTest: Robust statistical testing of proteomics data with missing values improves detection of biologically relevant features

Schwämmle, V.; Hagensen, C. E.; Rogowska-Wrzesinska, A.; Jensen, O. N.

10.1101/765818 — bioinformatics — Posted on 2019-09-11

2296 Experience-dependent changes to cortico-hippocampal networks during NREM sleep

Aleman Zapata, A.; Morris, R. G.; Battaglia, F. P.; Genzel, L.

10.1101/765149 — neuroscience — Posted on 2019-09-11

2297 AstroDot: a new method for studying the spatial distribution of mRNA in astrocytes

Oudart, M.; Tortuyaux, R.; Mailly, P.; Mazare, N.; Boulay, A.-C.; Cohen-Salmon, M.

10.1101/765784 — neuroscience — Posted on 2019-09-11

2298 How neurons move during action potentials

Ling, T.; Boyle, K. C.; Zuckerman, V.; Flores, T.; Ramakrishnan, C.; Deisseroth, K.; Palanker, D.

10.1101/765768 — neuroscience — Posted on 2019-09-11

2299 p53-induced apoptosis is specified by a translation program regulated by PCBP2 and DHX30.

Rizzotto, D.; Zaccara, S.; Rossi, A.; Galbraith, M. D.; Andrysik, Z.; Pandey, A.; Sullivan, K. D.; Quattrone, A.; Espinosa, J. M.; Dassi, E.; Inga, A.

10.1101/764555 — molecular biology — Posted on 2019-09-11

2300 Mixed-stock analyses among migratory, non-native Chinook salmon at-sea and assignment to natal sites in freshwater at their introduced range in South America

Musleh, S. S.; Seeb, L. W.; Seeb, J. E.; Ernst, B. G.; Neira, S. E.; Harrod, C.; Gomez-Uchida, D.

10.1101/732248 — genetics — Posted on 2019-09-11

2301 An unprecedented combination of metabolic pathways in the cryptic plastid of a non-photosynthetic euglenophyte

Füssy, Z.; Zahonova, K.; Tomcala, A.; Krajcovic, J.; Yurchenko, V.; Obornik, M.; Elias, M.

10.1101/765255 — evolutionary biology — Posted on 2019-09-11

2302 Using a residency index to estimate the economic value of saltmarsh provisioning services for commercially important fish species

Mills, M.; McCormick, H.; Davis, K.; Salguero-Gomez, R.

10.1101/755835 — ecology — Posted on 2019-09-11

2303 Comprehensive characterisation of cell-free tumour DNA in plasma and urine of patients with renal tumours

Smith, C. G.; Moser, T.; Burge, J.; Eldridge, M.; Riediger, A. L.; Mouliere, F.; Chandrananda, D.; Heider, K.; Wan, J. C.; Warren, A. Y.; Morris, J.; Hudecova, I.; Cooper, W. N.; Mitchell, T. J.; Gale, D.; Ruiz-Valdepenas, A.; Klatte, T.; Ursprung, S.; Sala, E.; Riddick, A. C.; Aho, T. F.; Armitage, J. N.; Perakis, S.; Pichler, M.; Seles, M.; Wcislo, G.; Welsh, S. J.; Matakidou, A.; Eisen, T.; Massie, C. E.; Rosenfeld, N.; Heitzer, E.; Stewart, G. D.

10.1101/758003 — cancer biology — Posted on 2019-09-11

2304 SIRT6 is a DNA double-strand break sensor

Toiber, D.; Onn, L.; Cleitman, G.; Ilic, S.; Portillo, M.; Stein, D.; Slobodnik, Z.; Kaluski, S.; Einav, M.; Erdel, F.; Shirat, I.; Akabayov, B.

10.1101/765172 — biochemistry — Posted on 2019-09-11

2305 Learning action-oriented models through active inference

Tschantz, A.; Seth, A. K.; Buckley, C. L.

10.1101/764969 — animal behavior and cognition — Posted on 2019-09-11

2306 Why does a flying fish taxi on sea surface before take-off? A hydrodynamic interpretation

Deng, J.; Wang, S.; Zhang, L.; Mao, X.

10.1101/765560 — zoology — Posted on 2019-09-11

2307 Acute myocardial injury in mdx hearts ameliorated by ARB but not ACE inhibitor treatment

Meyers, T. A.; Heitzman, J. A.; Townsend, D.

10.1101/765602 — physiology — Posted on 2019-09-11

2308 Improving the diagnosis and classification of Ph-negative myeloproliferative neoplasms through deep phenotyping

Sirinukunwattana, K.; Aberdeen, A.; Theissen, H.; Sousos, N.; Psaila, B.; Mead, A.; Turner, G.; Rees, G.; Rittscher, J.; Royston, D.

10.1101/762013 — pathology — Posted on 2019-09-11

2309 Links between autobiographical memory richness and temporal discounting in older adults

Lempert, K. M.; MacNear, K. A.; Wolk, D. A.; Kable, J. W.

10.1101/765537 — neuroscience — Posted on 2019-09-11

2310 FAP overexpression induce Epithelial-Mesenchymal Transition (EMT) in oral squamous cell carcinoma by down-regulating DPP9 gene.

Wu, Q.; Zhao, M.; Huang, G.; Zheng, Z.-n.; Zeng, W.; Lv, X.

10.1101/765743 — molecular biology — Posted on 2019-09-11

2311 Impact of suboptimal APOBEC3G neutralization on the emergence of HIV drug resistance in humanized mice

Hernandez, M. M.; Fahrny, A.; Jayaprakash, A.; Gers-Huber, G.; Dillon-White, M.; Audige, A.; Mulder, L. C. F.; Sachidanandam, R.; Speck, R. F.; Simon, V.

10.1101/764381 — microbiology — Posted on 2019-09-11

2312 A model for the regulation of the timing of cell division by the circadian clock in the cyanobacterium Synechococcus elongatus

Ho, P.-Y.; Martins, B. M. C.; Amir, A.

10.1101/765669 — microbiology — Posted on 2019-09-11

2313 Species-specific secretion of ESX-5 type VII substrates is determined by the linker 2 of EccC5

Bunduc, C. M.; Ummels, R.; Bitter, W.; Houben, E. N.

10.1101/765206 — microbiology — Posted on 2019-09-11

2314 Approaches for integrating heterogeneous RNA-seq data reveals cross-talk between microbes and genes in asthmatic patients

Spakowicz, D.; Lou, S.; Barron, B.; Li, T.; Gomez, J.; Liu, Q.; Grant, N.; Yan, X.; Weinstock, G.; Chupp, G. L.; Gerstein, M.

10.1101/765297 — genomics — Posted on 2019-09-11

2315 Exons, Introns, and UCEs Reveal Conflicting Phylogenomic Signals in a Rapid Radiation of Frogs (Ranidae: Hylarana)

Chan, K. O.; Hutter, C.; Wood, P. L.; Grismer, L.; Brown, R.

10.1101/765610 — evolutionary biology — Posted on 2019-09-11

2316 Phenotypic Switching of Naïve T cells to Immune-suppressive Treg-like Cells by Mutant KRAS

Kalvala, A.; Wallet, P.; Yang, L.; Wang, C.; Li, H.; Nam, A.; Nathan, A.; Mambetsariev, I.; Poroyko, V.; Gao, H.; Chu, P.; Sattler, M.; Bild, A.; Manuel, E. R.; Lee, P. P.; Jolly, M. K.; Kulkarni, P.; Salgia, R.

10.1101/763912 — cancer biology — Posted on 2019-09-11

2317 Spatial distribution of lamin A determines nuclear stiffness and stress-mediated deformation

Srivastava, L. K.; Ju, Z.; Ghagre, A.; Ehrlicher, A. J.

10.1101/765263 — bioengineering — Posted on 2019-09-11

2318 Artifact-free whole-slide imaging with structured illumination microscopy and Bayesian image reconstruction

Johnson, K.; Hagen, G. M.

10.1101/765396 — bioengineering — Posted on 2019-09-11

2319 Ants acknowledge information to control its rate of transfer

Valentini, G.; Mizumoto, N.; Pratt, S. C.; Pavlic, T. P.; Walker, S. I.

10.1101/765198 — animal behavior and cognition — Posted on 2019-09-11

2320 Transcriptomic Stratification of Late-Onset Alzheimer’s Cases Reveals Novel Genetic Modifiers of Disease Pathology

Milind, N.; Preuss, C.; Haber, A.; Ananda, G.; Mukherjee, S.; John, C.; Shapley, S.; Tyler, A. L.; Logsdon, B. A.; Crane, P. K.; Carter, G. W.

10.1101/763516 — systems biology — Posted on 2019-09-11

2321 Disruption of NOX2-dependent Oxidative Injury with a Targeted Gene-Therapy Approach Prevents Atrial Fibrillation in a Canine Model

Yoo, S.; Pfenniger, A.; Hoffman, J.; Zhang, W.; Ng, J.; Burrell, A.; Johnson, D. A.; Gussak, G.; Waugh, T.; Bull, S.; Benefield, B.; Knight, B. P.; Passman, R.; Wasserstrom, J. A.; Aistrup, G. L.; Arora, R.

10.1101/765008 — physiology — Posted on 2019-09-11

2322 Does body position before and during blood sampling influence the athlete biological passport variables?

Astolfi, T.; Schumacher, Y. O.; Crettaz von Roten, F.; Saugy, M.; Faiss, R.

10.1101/759563 — physiology — Posted on 2019-09-11

2323 An Aryl Hydrocarbon Receptor from the Caecilian Gymnopis multiplicata Suggests Low Dioxin Affinity in the Ancestor of All Three Amphibian Orders

Kazzaz, S. A.; Giana Tagliabue, S.; Franks, D. G.; Denison, M. S.; Hahn, M. E.; Bonati, L.; Powell, W. H.

10.1101/750653 — pharmacology and toxicology — Posted on 2019-09-11

2324 Sequences of Intonation Units Form a 1 Hz Rhythm

Inbar, M.; Grossman, E.; Landau, A. N.

10.1101/765016 — neuroscience — Posted on 2019-09-11

2325 Multi-hit autism genomic architecture evidenced from consanguineous families with involvement of FEZF2 and mutations in high-risk genes

Bensaid, M.; Loe-Mie, Y.; Lepagnol-Bestel, A.-M.; Han, W.; Santpere, G.; Klaric, T.; Plancon, C.; Roudies, R.; Benhima, I.; Tarik, N.; Nitschke, P.; Plaza, J.-M.; Kisra, H.; Deleuze, J.-F.; Sestan, N.; Moalic, J.-M.; Simonneau, M.

10.1101/759480 — neuroscience — Posted on 2019-09-11

2326 Neurocognitive patterns dissociating semantic processing from executive control are linked to more detailed off-task mental time travel

Wang, H.-T.; Ho, N. S. P.; Bzdok, D.; Bernhardt, B. C.; Margulies, D. S.; Jefferies, E.; Smallwood, J.

10.1101/765073 — neuroscience — Posted on 2019-09-11

2327 Saccadic foraging reveals mechanisms of value-based decision-making in primate superior colliculus

Zhang, B.; Kan, J. Y. Y.; Dorris, M. C.

10.1101/764357 — neuroscience — Posted on 2019-09-11

2328 The hippocampus is critical for spatial relational attention

Ruiz, N. A.; Meager, M. R.; Agarwal, S.; Aly, M.

10.1101/765222 — neuroscience — Posted on 2019-09-11

2329 From competing motor plans to a single action within a single trial on the human motor periphery

Gu, C.; Corneil, B. D.; Medendorp, P. W.; Selen, L. P. J.

10.1101/765180 — neuroscience — Posted on 2019-09-11

2330 Hormonal and neural correlates of care in active versus observing poison frog parents

Fischer, E. K.; O'Connell, L. A.

10.1101/765503 — neuroscience — Posted on 2019-09-11

2331 Aquatic Elusimicrobia are metabolically diverse compared to gut microbiome Elusimicrobia and some have novel nitrogenase-like gene clusters

Banfield, J. F.; Meheust, R.; He, C.; Farag, I.; Castelle, C. J.; Chen, L.-X.; Matheus Carnevali, P. B.; Hug, L. A.; Amano, Y.

10.1101/765248 — microbiology — Posted on 2019-09-11

2332 Single-cell atlas of the first intra-mammalian developmental stage of the human parasite Schistosoma mansoni

Diaz Soria, C. L.; Lee, J.; Chong, T.; Coghlan, A.; Tracey, A.; Young, M. D.; Andrews, T.; Hall, C.; Ng, B. L.; Rawlinson, K.; Doyle, S. R.; Leonard, S.; Lu, Z.; Bennett, H. M.; Rinaldi, G.; Newmark, P. A.; Berriman, M.

10.1101/754713 — genomics — Posted on 2019-09-11

2333 Spatial and phylogenetic structure of DNA-species of Alpine stonefly community assemblages across seven habitats

Gamboa, M.; Serrana, J. M.; Takemon, Y.; Monaghan, M. T.; Watanabe, K.

10.1101/765578 — evolutionary biology — Posted on 2019-09-11

2334 Host nutrient supply mediates facilitation and competition between plant viruses

Kendig, A. E.; Borer, E. T.; Boak, E. N.; Picard, T. C.; Seabloom, E. W.

10.1101/761254 — ecology — Posted on 2019-09-11

2335 Hispanic/Latino gastric adenocarcinoma patients have distinct molecular profiles including a high rate of germline CDH1 mutations

Wang, S. C.; Yeu, Y.; Hammer, S. T.; Xiao, S.; Zhu, M.; Hong, C.; Yoon, L. Y.; Nassour, I.; Shen, J.; Agarwal, D.; Reznik, S. I.; Mansour, J. C.; Yopp, A. C.; Zhu, H.; Hwang, T. H.; Porembka, M. R.

10.1101/764779 — cancer biology — Posted on 2019-09-11

2336 cAb-Rep: A Database of Curated Antibody Repertoires for Exploring antibody diversity and Predicting Antibody Prevalence

Guo, Y.; Chen, K.; Kwong, P. D.; Shapiro, L.; Sheng, Z.

10.1101/765099 — bioinformatics — Posted on 2019-09-11

2337 Integrated clonal analysis reveals circulating tumor DNA in urine and plasma of glioma patients

Mouliere, F.; Heider, K.; Smith, C. G.; Su, J.; Thompson, M.; Morris, J.; Wan, J. C. M.; Chandrananda, D.; Hadfield, J.; Grezlak, M.; Hudecova, I.; Cooper, W.; Gale, D.; Eldridge, M.; Watts, C.; Brindle, K.; Rosenfeld, N.; Mair, R.

10.1101/758441 — genomics — Posted on 2019-09-11

2338 High-sensitivity monitoring of ctDNA by patient-specific sequencing panels and integration of variant reads

Wan, J. C.; Heider, K.; Gale, D.; Murphy, S.; Fisher, E.; Morris, J.; Mouliere, F.; Chandrananda, D.; Marshall, A.; Gill, A. B.; Chan, P. Y.; Barker, E.; Young, G.; Cooper, W. N.; Hudecova, I.; Marass, F.; Bignell, G. R.; Alifrangis, C.; Middleton, M. R.; Gallagher, F. A.; Parkinson, C.; Durrani, A.; McDermott, U.; Smith, C. G.; Massie, C.; Corrie, P. G.; Rosenfeld, N.

10.1101/759399 — cancer biology — Posted on 2019-09-11

2339 A new high-throughput tool to screen mosquito-borne viruses in Zika virus endemic/epidemic areas

Moutailler, S.; Yousfi, L.; Mousson, L.; Devillers, E.; Vazeille, M.; Vega Rua, A.; Perrin, Y.; Jourdain, F.; Chandre, F.; Cannet, A.; Chantilly, S.; Restrepo, J.; Guidez, A.; Dusfour, I.; Vieira Santos de Abreu, F.; Pereira dos Santos, T.; Jiolle, D.; Visser, T. M.; Koenraadt, C. J. M.; Wongsokarijo, M.; Diallo, M.; Diallo, D.; Gaye, A.; Boyer, S.; Duong, V.; Piorkowski, G.; Paupy, C.; Lourenco-de-Oliveira, R.; de Lamballerie, X.; Failloux, A.-B.

10.1101/764704 — molecular biology — Posted on 2019-09-11

2340 An updated genotype classification system for Zika viruses

Guimaraes, H.; Libin, P.; Pimentel, V.; Pingarilho, M.; Theys, K.; Abecasis, A.

10.1101/760066 — genomics — Posted on 2019-09-11

2341 CcnA, a novel non-coding RNA regulating the bacterial cell cycle

Beroual, W.; Lalaouna, D.; Benzaina, N.; Valette, O.; Prevost, K.; Denis, Y.; Djendli, M.; Brilli, M.; Robledo, M.; Jimenez Zurdo, J. I.; Masse, E.; Biondi, E. G.

10.1101/756452 — microbiology — Posted on 2019-09-11

2342 Sessile growth reveals novel paradigms of Pseudomonas aeruginosa iron-regulated antimicrobial activity against Staphylococcus aureus

Brewer, L. K.; Huang, W.; Kane, M. A.; Oglesby-Sherrouse, A. G.

10.1101/765115 — microbiology — Posted on 2019-09-11

2343 Transcriptomic response of Nitrosomonas europaea transitioned from ammonia- to oxygen-limited steady-state growth

Sedlacek, C. J.; Giguere, A. T.; Dobie, M. D.; Mellbye, B. L.; Ferrell, R. V.; Woebken, D.; Sayavedra-Soto, L.; Bottomley, P.; Daims, H.; Wagner, M.; Pjevac, P.

10.1101/765727 — microbiology — Posted on 2019-09-11

2344 Identifying transposon insertions in bacterial genomes through nanopore sequencing

Baltrus, D. A.; Clark, M.; Medlen, J.

10.1101/765545 — microbiology — Posted on 2019-09-11

2345 Co-option of the gibbon-specific LAVA retrotransposon in DNA repair pathways

Okhovat, M.; Nevonen, K. A.; Davis, B.; Michener, P.; Ward, S.; Milhaven, M.; Harshman, L.; Sohota, A.; O'Neill, R. J.; Ahituv, N.; Veeramah, K. R.; Carbone, L.

10.1101/765230 — evolutionary biology — Posted on 2019-09-11

2346 Identification of novel mutational signatures in Asian oral squamous cell carcinomas associated with bacterial infections

Boot, A.; Ng, A. W. T.; Chong, F. T.; Ho, S.-C.; Yu, W.; Tan, D. S. W.; Iyer, N. G.; Rozen, S. G.

10.1101/368753 — genomics — Posted on 2019-09-11

2347 Chronic pain alters microvascular architectural organization of somatosensory cortex

Zippo, A. G.; Del Grosso, V.; Patera, A.; Riccardi, M. P.; Tredici, I. G.; Bertoli, G. R.; Mittone, A.; Valente, M.; Stampanoni, M.; Coan, P.; Bravin, A.; Biella, G. M. E.

10.1101/755132 — neuroscience — Posted on 2019-09-11

2348 The folded X-pattern is not necessarily a statistical signature of decision confidence

Rausch, M.; Zehetleitner, M.

10.1101/426635 — neuroscience — Posted on 2019-09-11

2349 Genome-wide changes in genetic diversity in a Myotis lucifugus population affected by white-nose syndrome

Lilley, T.; Wilson, I.; Field, K. A.; Reeder, D. M.; Turner, G. G.; Kurta, A.; Blomberg, A. S.; Hoff, S.; Herzog, C.; Paterson, S.

10.1101/764647 — evolutionary biology — Posted on 2019-09-11

2350 A finite vocabulary of antibody-antigen interaction enables predictability of paratope-epitope binding

Akbar, R.; Jeliazkov, J. R.; Robert, P. A.; Snapkov, I.; Pavlovic, M.; Slabodkin, A.; Weber, C. R.; Safonova, Y.; Sandve, G. K.; Greiff, V.

10.1101/759498 — immunology — Posted on 2019-09-11

2351 DLO Hi-C Tool for Digestion-Ligation-Only Hi-C Chromosome Conformation Capture Data Analysis

Hong, P.; Jiang, H.; Xu, W.; Lin, D.; Xu, Q.; Cao, G.; Li, G.

10.1101/764332 — bioinformatics — Posted on 2019-09-11

2352 Effect of Feedback Valence on Family Resemblance Category Learning

xing, q.; Che, J.-S.; Li, A.-m.

10.1101/764738 — neuroscience — Posted on 2019-09-10

2353 Range of motion and between-measurement variation of spinal kinematics in sound horses at trot on the straight line and on the lunge.

Hardeman, A.; Byström, A.; Roepstorff, L.; Swagemakers, J. H.; van Weeren, R.; Serra Braganca, F.

10.1101/764720 — bioengineering — Posted on 2019-09-10

2354 A Ponceau Staining based Dot-Blot Assay for reliable and cost-effective Protein Quantification

Helbing, D.-L.; Böhm, L.; Cui, Y.; Stabenow, L. K.; Morrison, H.

10.1101/764712 — biochemistry — Posted on 2019-09-10

2355 The scale-invariant, temporal profile of neuronal avalanches in relation to cortical γ-oscillations

Miller, S.; Yu, S.; Plenz, D.

10.1101/757278 — neuroscience — Posted on 2019-09-10

2356 Serotonergic development of active sensing

Azarfar, A.; Zhang, Y.; Alishbayli, A.; Schubert, D.; Homberg, J. R.; Celikel, T.

10.1101/762534 — neuroscience — Posted on 2019-09-10

2357 FARFAR2: Improved de novo Rosetta prediction of complex global RNA folds

Watkins, A. M.; Das, R.

10.1101/764449 — biochemistry — Posted on 2019-09-10

2358 Simple Framework for Constructing Functional Spiking Recurrent Neural Networks

Kim, R.; Li, Y.; Sejnowski, T. J.

10.1101/579706 — neuroscience — Posted on 2019-09-10

2359 Optimization and quantitative evaluation of fluorescence in situ hybridization chain reaction in clarified fresh-frozen brain tissues

KUMAR, V.; KROLEWSKI, D. M.; HEBDA-BAUER, E. K.; PARSEGIAN, A.; MARTIN, B.; FOLTZ, M.; AKIL, H.; WATSON, S.

10.1101/763920 — neuroscience — Posted on 2019-09-10

2360 Dysregulated interactions triggered by a neuropathy-causing mutation in the IPV motif of HSP27

Alderson, T. R.; Adriaenssens, E.; Asselbergh, B.; Pritisanac, I.; Gastall, H. Y.; Walti, M. A.; Louis, J. M.; Timmerman, V.; Baldwin, A.; Benesch, J. L. P.

10.1101/708180 — biochemistry — Posted on 2019-09-10

2361 Heritable Learning Phenotypes Drive Collective Cognition

Cook, C. N.; Lemanski, N. J.; Mosqueiro, T.; Ozturk, C.; Gadau, J.; Pinter-Wollman, N.; Smith, B. H.

10.1101/761676 — animal behavior and cognition — Posted on 2019-09-10

2362 A role of the Nse4 kleisin and Nse1/Nse3 KITE subunits in the ATPase cycle of SMC5/6

Vondrova, L.; Adamus, M.; Nociar, M.; Kolesar, P.; Oliver, A.; Palecek, J. J.

10.1101/760678 — genetics — Posted on 2019-09-10

2363 Genome Tree of Life: Deep Burst of Organism Diversity

Choi, J.; Kim, S.-H.

10.1101/756155 — evolutionary biology — Posted on 2019-09-10

2364 Using selection by non-antibiotic stressors to sensitize bacteria to antibiotics

Maltas, J.; Krasnick, B.; Wood, K. B.

10.1101/628834 — microbiology — Posted on 2019-09-10

2365 Therapeutically Exploring Persister Metabolism In Bacteria

Mohiuddin, S. G.; Hoang, T.; Saba, A.; Karki, P.; Orman, M. A.

10.1101/737320 — microbiology — Posted on 2019-09-10

2366 Maternal exposure to a mitochondrial toxicant results in life-long alterations in DNA methylation and gene expression in the offspring

Lozoya, O.; Xu, F.; Grenet, D.; Wang, T.; Grimm, S.; Godfrey, V.; Waidyanatha, S.; Woychik, R.; Santos, J.

10.1101/758474 — genomics — Posted on 2019-09-10

2367 Corona exchange dynamics on carbon nanotubes by multiplexed fluorescence monitoring

Pinals, R. L.; Yang, D.; Lui, A.; Cao, W.; Landry, M. P.

10.1101/761296 — bioengineering — Posted on 2019-09-10

2368 StanDep: capturing transcriptomic variability improves context-specific metabolic models

Joshi, C. J.; Schinn, S.-M.; Richelle, A.; Shamie, I.; O'Rourke, E. J.; Lewis, N.

10.1101/594861 — systems biology — Posted on 2019-09-10

2369 Spatially segregated responses to visuo-tactile stimuli in mouse neocortex during active sensation

Couto, J.; Kandler, S.; Mao, D.; McNaughton, B. L.; Arckens, L.; Bonin, V.

10.1101/199364 — neuroscience — Posted on 2019-09-10

2370 Degradation of recalcitrant polyurethane and xenobiotic additives by a selected landfill microbial community and its biodegradative potential revealed by proximity ligation-based metagenomic analysis

Gaytán, I.; Sánchez-Reyes, A.; Burelo, M.; Vargas-Suárez, M.; Liachko, I.; Press, M.; Sullivan, S.; Cruz-Gómez, J.; Loza-Tavera, H.

10.1101/760637 — genomics — Posted on 2019-09-10

2371 Molecular profiling predicts meningioma recurrence and reveals loss of DREAM complex repression in aggressive tumors

Patel, A. J.; Wan, Y.-W.; Al-Ouran, R.; Revelli, J.-P.; Cardenas, M. F.; Oneissi, M.; Xi, L.; Jalali, A.; Magnotti, J.; Muzny, D. M.; Doddapaneni, H.; Sebastian, S.; Heck, K. A.; Goodman, J. C.; Gopinath, S. P.; Liu, Z.; Rao, G.; Plon, S. E.; Yoshor, D.; Wheeler, D. A.; Zoghbi, H. Y.; Klisch, T. J.

10.1101/679480 — cancer biology — Posted on 2019-09-10

2372 Animacy modulates gender agreement computation in Hindi: An ERP study

Bhattamishra, S.; Muralikrishnan, R.; Choudhary, K. K.

10.1101/764811 — animal behavior and cognition — Posted on 2019-09-10

2373 Hippocampal place cells encode local surface texture boundaries

Wang, C.-H.; Monaco, J. D.; Knierim, J. J.

10.1101/764282 — neuroscience — Posted on 2019-09-10

2374 Single-cell-resolution transcriptome map of human, chimpanzee, bonobo, and macaque brains

Khrameeva, E.; Kurochkin, I.; Han, D.; Guijarro, P.; Kanton, S.; Santel, M.; Qian, Z.; Rong, S.; Mazin, P.; Bulat, M.; Efimova, O.; Tkachev, A.; Guo, S.; Sherwood, C.; Camp, G.; Paabo, S.; Treutlein, B.; Khaitovich, P.

10.1101/764936 — evolutionary biology — Posted on 2019-09-10

2375 Genome-wide changes in genetic diversity in a Myotis lucifugus population affected by white-nose syndrome

Lilley, T.; Wilson, I.; Field, K. A.; Reeder, D. M.; Turner, G. G.; Kurta, A.; Blomberg, A. S.; Hoff, S.; Herzog, C.; Paterson, S.

10.1101/764647 — evolutionary biology — Posted on 2019-09-10

2376 Test-retest reliability and long-term stability of 3-tissue constrained spherical deconvolution methods for analyzing diffusion MRI data

Newman, B. T.; Dhollander, T.; Reynier, K. A.; Panzer, M. B.; Druzgal, T. J.

10.1101/764506 — neuroscience — Posted on 2019-09-10

2377 cGMP dynamics underlie thermosensation in C. elegans

Aoki, I.; Shiota, M.; Nakano, S.; Mori, I.

10.1101/764571 — neuroscience — Posted on 2019-09-10

2378 Gradients in the cerebellar cortex enable Fourier-like transformation and improve storing capacity

Straub, I.; Witter, L.; Eshra, A.; Hoidis, M.; Byczkowicz, N.; Maass, S.; Delvendahl, I.; Dorgans, K.; Savier, E.; Bechmann, I.; Eilers, J.; Krueger, M.; Isope, P.; Hallermann, S.

10.1101/764886 — neuroscience — Posted on 2019-09-10

2379 Variability in locomotor dynamics reveals the critical role of feedback in task control

Uyanik, I.; Sefati, S.; Stamper, S. A.; Cho, K.-A.; Ankarali, M. M.; Fortune, E. S.; Cowan, N.

10.1101/764621 — neuroscience — Posted on 2019-09-10

2380 Attention to rhythms: sensory-specific constrained sampling of temporal regularities

Zalta, A.; Petkoski, S.; Morillon, B.

10.1101/764563 — neuroscience — Posted on 2019-09-10

2381 European and tropical Aedes albopictus mosquito populations have similar systemic Zika virus infection dynamics

Lequime, S.; Dehecq, J.-S.; Briolant, S.; Fontaine, A.

10.1101/764498 — microbiology — Posted on 2019-09-10

2382 Dynamics of genome architecture and chromatin function during human B cell differentiation and neoplastic transformation

Martin-Subero, J. I.; Vilarrasa-Blasi, R.; Soler-Vila, P.; Verdaguer-Dot, N.; Russinol, N.; Di Stefano, M.; Chapaprieta, V.; Clot, G.; Farabella, I.; Cusco, P.; Agirre, X.; Prosper, F.; Beekman, R.; Bea, S.; Colomer, D.; Gut, I. G.; Stunnenberg, H. G.; Campo, E.; Marti-Renom, M. A.

10.1101/764910 — genomics — Posted on 2019-09-10

2383 Topoisomerase II inhibitors induce cGAS-STING dependent inflammation resulting in cytokine induction and immune checkpoint activation

Wilkinson, R. D. A.; McCabe, N.; Parkes, E. E.; Barros, E. M.; Johnston, D. I.; Ali, R.; Lappin, K.; Greenberg, R.; Harkin, D. P.; McIntosh, S. A.; Kennedy, R. D.; Savage, K. I.

10.1101/764662 — cancer biology — Posted on 2019-09-10

2384 DLO Hi-C Tool for Digestion-Ligation-Only Hi-C Chromosome Conformation Capture Data Analysis

Hong, P.; Jiang, H.; Xu, W.; Lin, D.; Xu, Q.; Li, G.; Cao, G.

10.1101/764332 — bioinformatics — Posted on 2019-09-10

2385 A robust estimation of mosaic loss of chromosome Y from genotype-array-intensity data to improve disease risk associations and transcriptional effects

Gonzalez, J. R.; Lopez-Sanchez, M.; Caceres, A.; Puig, P.; Esko, T.; Perez-Jurado, L. A.

10.1101/764845 — genomics — Posted on 2019-09-10

2386 Cell type specific novel lincRNAs and circRNAs in the BLUEPRINT haematopoietic transcriptomes atlas.

Grassi, L.; Izuogu, O. G.; Jeorge, N. A.; Seyres, D.; Bustamante, M.; Burden, F.; Farrow, S.; Farahi, N.; Martin, F. J.; Frankish, A.; Mudge, J. M.; Kostadima, M.; Petersen, R.; Lambourne, J. J.; Rowlston, S.; Martin-Rendon, E.; Clarke, L.; Downes, K.; Estivill, X.; Flicek, P.; Martens, J. H.; Yaspo, M.-L. H.; Stunnenberg, H.; Ouwehand, W. H.; Passetti, F.; Turro, E.; Frontini, M.

10.1101/764613 — genomics — Posted on 2019-09-10

2387 Human embryoid bodies model basal lamina assembly and muscular dystrophy

Nickolls, A. R.; Lee, M. M.; Zukosky, K.; Mallon, B. S.; Bonnemann, C. G.

10.1101/765131 — cell biology — Posted on 2019-09-10

2388 When two cells are better than one: specialized stellate cells provide a privileged route for uniquely rapid water flux in Drosophila renal tubule

Cabrero, P.; Terhzaz, S.; Dornan, A. J.; Ghimire, S.; Holmes, H. L.; Turin, D. R.; Romero, M. F.; Davies, S. A.; Dow, J. A. T.

10.1101/763664 — physiology — Posted on 2019-09-10

2389 Gene Activation and repression by the glucocorticoid receptor are mediated by sequestering Ep300 and two modes of chromatin binding

Sarusi Portuguez, A.; Grbesa, I.; Tal, M.; Deitch, R.; Raz, D.; Weismann, R.; Schwartz, M.; Loza, O.; Sung, M.-H.; Kaplan, T.; Hakim, O.

10.1101/764480 — molecular biology — Posted on 2019-09-10

2390 Massive analysis of 64’628 bacterial genomes to decipher a water reservoir and origin of mobile colistin resistance (mcr) gene variants: is there another role for this family of enzymes?

Ben Khedher, M.; Baron, S. A.; Riziki, T.; Ruimy, R.; Diene, S. M.; Rolain, J.-M.

10.1101/763474 — genomics — Posted on 2019-09-10

2391 Genomic interrogation of the burden and transmission of multidrug-resistant pathogens within and across hospital networks

Sherry, N. L.; Lee, R. S.; Gorrie, C. L.; Kwong, J. C.; Stuart, R. L.; Korman, T.; Marshall, C.; Higgs, C.; Chan, H. T.; Graham, M.; Johnson, P.; Leroi, M.; Reed, C.; Richards, M.; Slavin, M. A.; Worth, L. J.; Howden, B. P.; Grayson, M. L.; Controlling Superbugs Study Group,

10.1101/764787 — genomics — Posted on 2019-09-10

2392 Aquatic and terrestrial organisms display contrasting life history strategies as a result of environmental adaptations

Capdevila, P.; Beger, M.; Blomberg, S. P.; Hereu, B.; Linares, C.; Salguero-Gomez, R.

10.1101/764464 — ecology — Posted on 2019-09-10

2393 Integrated transcriptomic correlation network analysis identifies COPD molecular determinants

Paci, P.; Fiscon, G.; Conte, F.; Licursi, V.; Morrow, J.; Hersh, C.; Cho, M.; Castaldi, P.; Glass, K.; Silverman, E. K.; Farina, L.

10.1101/764852 — bioinformatics — Posted on 2019-09-10

2394 Segmenting nuclei in brightfield images with neural networks

Fishman, D.; Salumaa, S.-O.; Majoral, D.; Peel, S.; Wildenhain, J.; Schreiner, A.; Palo, K.; Parts, L.

10.1101/764894 — bioinformatics — Posted on 2019-09-10

2395 Native plasmid-encoded mercury resistance genes are functional and demonstrate natural transformation in environmental bacterial isolates

Kothari, A.; Soneja, D.; Tang, A.; Carlson, H. K.; Deutschbauer, A. M.; Mukhopadhyay, A.

10.1101/764415 — molecular biology — Posted on 2019-09-10

2396 Evaluation of High-Pressure Processing in Inactivation of the Hepatitis E Virus

Nasheri, N.; Doctor, T.; Chen, A.; Harlow, J.; Gill, A.

10.1101/764407 — microbiology — Posted on 2019-09-10

2397 Cell cycle-balanced expression of pluripotency regulators via cyclin-dependent kinase 1 activity

Kasvandik, S.; Schilf, R.; Saarma, M.; Loog, M.; Jaager, K.

10.1101/764639 — cell biology — Posted on 2019-09-10

2398 Dynactin p150 promotes processive motility of DDB complexes by minimizing diffusional behavior of dynein

Feng, Q.; Gicking, A. M.; Hancock, W. O.

10.1101/764761 — cell biology — Posted on 2019-09-10

2399 Exploiting a Mechanical Perturbation of Titin Domain to Identify How Force Field Parameterization Affects Protein Refolding Pathways

Wang, D.; Marszalek, P.

10.1101/764076 — biophysics — Posted on 2019-09-10

2400 SpineJ: A software tool for quantitative analysis of nanoscale spine morphology

Levet, F.; Tonnesen, J.; Nagerl, V.; Sibarita, J.-B.

10.1101/764548 — bioinformatics — Posted on 2019-09-10

2401 Community Attitudes on Genetic Research of Gender Identity, Sexual Orientation, and Mental Health

Thomas, T. R.; Hofammann, D.; McKenna, B. G.; van der Miesen, A. I. R.; Stokes, M. A.; Daniolos, P.; Michaelson, J. J.

10.1101/685982 — scientific communication and education — Posted on 2019-09-10

2402 Toxicants Associated with Spontaneous Abortion in the Comparative Toxicogenomics Database (CTD)

Harris, S. M.; Jin, Y.; Loch-Caruso, R.; Padilla, I. Y.; Meeker, J. D.; Bakulski, K. M.

10.1101/755868 — pharmacology and toxicology — Posted on 2019-09-10

2403 Memorize-Generalize: An online algorithm for learning higher-order sequential structure with cloned Hidden Markov Models

Rikhye, R. V.; Guntupalli, J. S.; Gothoskar, N.; Lazaro-Gredilla, M.; George, D. V.

10.1101/764456 — neuroscience — Posted on 2019-09-10

2404 The response of Pseudomonas putida to a complex lignolysate

Park, M.-R.; Chen, Y.; Thompson, M. G.; Benites, V.; Fong, B.; Petzold, C. J.; Baidoo, E. E. K.; Gladden, J.; Adams, P. D.; Keasling, J. D.; Simmons, B. A.; Singer, S.

10.1101/764399 — microbiology — Posted on 2019-09-10

2405 Mapping the Global Network of Extracellular Protease Regulation in Staphylococcus aureus

Gimza, B. D.; Larias, M. I.; Budny, B. G.; Shaw, L. N.

10.1101/764423 — microbiology — Posted on 2019-09-10

2406 Offspring production of ovarian organoids derived from spermatogonial stem cells by chromatin reorganization

Luo, H.; Li, X.; Tian, G. G.; Li, D.; Hou, C.; Ding, X.; Hou, L.; Lyu, Q.; Yang, Y.; Cooney, A.; Xie, W.; Xiong, J.; Wang, H.; Zhao, X.; Wu, J.

10.1101/764472 — genetics — Posted on 2019-09-10

2407 Ndc80/Nuf2-like protein KKIP1 connects a stable kinetoplastid outer kinetochore complex to the inner kinetochore and responds to metaphase tension

Brusini, L.; D'Archivio, S.; McDonald, J.; Wickstead, B.

10.1101/764829 — cell biology — Posted on 2019-09-10

2408 OmicsX: a web server for integrated OMICS analysis

Pan, J.; Qian, J.; Zhang, H.

10.1101/755918 — bioinformatics — Posted on 2019-09-10

2409 Spherical arena reveals optokinetic response tuning to stimulus location, size and frequency across entire visual field of larval zebrafish

Dehmelt, F. A.; Meier, R.; Hinz, J.; Yoshimatsu, T.; Simacek, C. A.; Wang, K.; Baden, T. B.; Arrenberg, A. B.

10.1101/754408 — neuroscience — Posted on 2019-09-10

2410 Ability of the misfolding avoidance hypothesis to explain protein evolutionary rates in the light of empirical evidence

Plata, G.; Usmanova, D. R.; Vitkup, D.

10.1101/736280 — evolutionary biology — Posted on 2019-09-10

2411 kASA: Taxonomic Analysis of Metagenomic Data on a Notebook

Weging, S.; Gogol-Döring, A.; Grosse, I.

10.1101/713966 — bioinformatics — Posted on 2019-09-10

2412 AsCRISPR: a web server for allele-specific sgRNA design in precision medicine

Zhao, G.; Li, J.; Tang, B.; Tang, Y.

10.1101/672634 — bioinformatics — Posted on 2019-09-10

2413 souporcell: Robust clustering of single cell RNAseq by genotype and ambient RNA inference without reference genotypes

Heaton, H.; Talman, A. M.; Knights, A.; Imaz, M.; Gaffney, D.; Durbin, R.; Hemberg, M.; Lawniczak, M.

10.1101/699637 — bioinformatics — Posted on 2019-09-10

2414 Reliable confidence intervals for RelTime estimates of evolutionary divergence times

Tao, Q.; Tamura, K.; Mello, B.; Kumar, S.

10.1101/677286 — evolutionary biology — Posted on 2019-09-10

2415 Pax2a regulates angiogenesis to facilitate mmp2-dependent basement membrane remodeling of the optic fissure

Weaver, M.; Pereira Piedade, W.; Meshram, N.; Famulski, J.

10.1101/678185 — developmental biology — Posted on 2019-09-10

2416 Discovery of an essential mycobacterial polar growth factor involved in cell envelope integrity and lipomannan and lipoarabinomannan transport

Gupta, K. R.; Rahlwes, K. C.; Wang, C.; Liu, J.; Morita, Y. S.; Rego, E. H.

10.1101/633768 — microbiology — Posted on 2019-09-10

2417 The phosphatase inhibitor Sds23 regulates cell division symmetry in fission yeast

Schutt, K. L.; Moseley, J. B.

10.1101/632349 — cell biology — Posted on 2019-09-10

2418 SciBet: a portable and fast single cell type identifier

Li, C.; Liu, B.; Kang, B.; Liu, Z.; Liu, Y.; Chen, C.; Ren, X.; Zhang, Z.

10.1101/645358 — bioinformatics — Posted on 2019-09-10

2419 Predicting intentional and unintentional task unrelated thought with EEG

Martel, A.; Arvaneh, M.; Robertson, I. H.; Dockree, P.

10.1101/764803 — neuroscience — Posted on 2019-09-10

2420 Early life stress alters transcriptomic patterning across reward circuitry in male and female mice

Pena, C. J.; Smith, M.; Ramakrishnan, A.; Cate, H. M.; Bagot, R. C.; Kronman, H. G.; Patel, B.; Chang, A. B.; Purushothaman, I.; Dudley, J. T.; Morishita, H.; Shen, L.; Nestler, E. J.

10.1101/624353 — neuroscience — Posted on 2019-09-10

2421 Modeling the Language of Life - Deep Learning Protein Sequences

Heinzinger, M.; Elnaggar, A.; Wang, Y.; Dallago, C.; Nechaev, D.; Matthes, F.; Rost, B.

10.1101/614313 — bioinformatics — Posted on 2019-09-10

2422 Evaluation of BMP-mediated patterning in a 3D mathematical model of the zebrafish blastula embryo

Li, L.; Wang, X.; Mullins, M. C.; Umulis, D. M.

10.1101/585471 — systems biology — Posted on 2019-09-10

2423 The impact of bone cancer on the peripheral encoding of mechanical pressure stimuli

Kucharczyk, M. W.; Chisholm, K. I.; Denk, F.; Bannister, K.; Dickenson, A. H.; McMahon, S. B.

10.1101/498980 — neuroscience — Posted on 2019-09-10

2424 Changes in ESCRT-III filament geometry drive membrane remodelling and fission in silico

Harker-Kirschneck, L.; Baum, B.; Saric, A.

10.1101/559898 — biophysics — Posted on 2019-09-10

2425 Volatility estimates increase choice switching and relate to prefrontal activity in schizophrenia

Deserno, L.; Boehme, R.; Mathys, C.; Katthagen, T.; Kaminski, J.; Stephan, K. E.; Heinz, A.; Schlagenhauf, F.

10.1101/227967 — neuroscience — Posted on 2019-09-10

2426 Collective Excitations in α-helical Protein Structures Interacting with the Water Environment

Kadantsev, V. N.; Goltsov, A.

10.1101/457580 — biophysics — Posted on 2019-09-10

2427 TIGIT is upregulated by HIV-1 infection and marks a highly functional adaptive and mature subset of natural killer cells

Vendrame, E.; Seiler, C.; Ranganath, T.; Zhao, N. Q.; Vergara, R.; Alary, M.; Labbe, A. C.; Guedou, F.; Poudrier, J.; Holmes, S.; Roger, M.; Blish, C. A.

10.1101/764217 — immunology — Posted on 2019-09-10

2428 Mesolimbic microglia display regionally distinct developmental trajectories

Hope, K. T.; Hawes, I. A.; Bonci, A.; De Biase, L. M.

10.1101/764233 — neuroscience — Posted on 2019-09-10

2429 On the mechanism of bilayer separation by extrusion; or, why your large unilamellar vesicles are not really unilamellar

Scott, H. L.; Skinkle, A.; Kelley, E. G.; Waxham, M. N.; Levental, I.; Heberle, F. A.

10.1101/764274 — biophysics — Posted on 2019-09-10

2430 Robust-fit to nature: an evolutionary perspective on biological (and artificial) neural networks

Hasson, U.; Nastase, S. A.; Goldstein, A.

10.1101/764258 — neuroscience — Posted on 2019-09-10

2431 A glycogenin homolog controls Toxoplasma gondii growth via glycosylation of an E3 ubiquitin ligase

Mandalasi, M.; Kim, H. W.; Rahman, K.; Sheikh, M. O.; Thieker, D.; Gas-Pascual, E.; Zhao, P.; Daniel, N. G.; van der Wel, H.; Ichikawa, T. H.; Glushka, J. N.; Wells, L.; Wood, Z. A.; West, C. M.

10.1101/764241 — microbiology — Posted on 2019-09-10

2432 Life history effects on neutral polymorphism levels of autosomes and sex chromosomes

Amster, G.; Sella, G.

10.1101/206862 — evolutionary biology — Posted on 2019-09-10

2433 Allosteric Inhibition of CRISPR-Cas9 by Bacteriophage-derived Peptides

Cui, Y.; Wang, S.; Chen, J.; Li, J.; Chen, W.; Wang, S.; Meng, B.; Zhu, W.; Zhang, Z.; Yang, B.; Jiang, B.; Yang, G.; Ma, P.; Liu, J.

10.1101/642538 — genomics — Posted on 2019-09-10

2434 Energy landscapes reveal agonist control of GPCR activation via microswitches

Fleetwood, O.; Matricon, P.; Carlsson, J.; Delemotte, L.

10.1101/627026 — biophysics — Posted on 2019-09-10

2435 Computer vision to automatically assess infant neuromotor risk

Chambers, C.; Seethapathi, N.; Saluja, R.; Loeb, H.; Pierce, S.; Bogen, D.; Prosser, L.; Johnson, M. J.; Kording, K. P.

10.1101/756262 — animal behavior and cognition — Posted on 2019-09-10

2436 In-field whole plant maize architecture characterized by Latent Space Phenotyping

Gage, J. L.; Richards, E.; Lepak, N.; Kaczmar, N.; Soman, C.; Chowdhary, G.; Gore, M. A.; Buckler, E. S.

10.1101/763342 — plant biology — Posted on 2019-09-10

2437 Refining the composition of the Arabidopsis thaliana 80S cytosolic ribosome

Salih, K. J.; Duncan, O.; Li, L.; Troesch, J.; Millar, A. H.

10.1101/764316 — plant biology — Posted on 2019-09-10

2438 Secondary origin, hybridization and sexual reproduction in a diploid-tetraploid contact zone of the facultative apomictic orchid Zygopetalum mackayi.

Moura, Y.; Alves Pereira, A.; Cristina Silva, C.; Moura de Souza, L.; de Souza, A. P.; Koehler, S.

10.1101/764134 — plant biology — Posted on 2019-09-10

2439 Arabidopsis PPC2 is crucial for growth at low CO2 by involvement in photorespiratory metabolism and integration of ABI5

You, L.; Zhang, J.; Li, L.; Xiao, C.; Feng, X.; Chen, S.; Guo, L.; Hu, H.

10.1101/764589 — plant biology — Posted on 2019-09-10

2440 Lipids in xylem sap of woody plants across the angiosperm phylogeny

Schenk, H. J.; Michaud, J. M.; Espino, S.; Melendres, T.; Roth, M. R.; Welti, R.; Kaack, L.; Jansen, S.

10.1101/763771 — plant biology — Posted on 2019-09-10

2441 Excessive assimilation of ammonium by plastidic glutamine synthetase is a major cause of ammonium toxicity in Arabidopsis thaliana

Hachiya, T.; Inaba, J.; Wakazaki, M.; Sato, M.; Toyooka, K.; Miyagi, A.; Kawai-Yamada, M.; Kiba, T.; Gojon, A.; Sakakibara, H.

10.1101/764324 — plant biology — Posted on 2019-09-10

2442 Overexpression of Mig-6 in Cartilage Induces An Osteoarthritis-Like Phenotype In Mice.

Bellini, M.; Pest, M. A.; Miranda-Rodrigues, M.; Jeong, J.-W.; Beier, F.

10.1101/764142 — physiology — Posted on 2019-09-10

2443 Disruption of Capn15 in mice leads to brain and eye deficits

Zha, C.; Farah, C. A.; Fonov, V.; Holt, R.; Ceroni, F.; Ragges, N.; Rudko, D.; Sossin, W. S.

10.1101/763888 — neuroscience — Posted on 2019-09-10

2444 Glioma-induced alterations in neuronal activity and neurovascular coupling during disease progression

Montgomery, M. K.; Kim, S. H.; Dovas, A.; Patel, K.; Mela, A.; Humala, N.; Zhao, H. T.; Thibodeaux, D. N.; Shaik, M.; Ma, Y.; Grinband, J.; Chow, D. S.; Schevon, C.; Hillman, E. M. C.; Canoll, P.

10.1101/763805 — neuroscience — Posted on 2019-09-10

2445 A computational observer model of spatial contrast sensitivity: Effects of photocurrent encoding, fixational eye movements and inference engine

Cottaris, N. P.; Wandell, B. A.; Rieke, F.; Brainard, D. H.

10.1101/759811 — neuroscience — Posted on 2019-09-10

2446 Structural neural connectivity analysis in zebrafish with restricted anterograde transneuronal viral labeling and quantitative brain mapping

Ma, M.; Kler, S.; Pan, Y. A.

10.1101/764035 — neuroscience — Posted on 2019-09-10

2447 Neuro-transcriptomic signatures for mood disorder morbidity and suicide mortality

Jabbi, M.; Arasappan, D.; Eickhoff, S. B.; Strakowski, S. M.; Nemeroff, C. B.; Hofmann, H.

10.1101/762492 — neuroscience — Posted on 2019-09-10

2448 Local network determinants of spontaneously emerging cortical maps

Fekete, T.; Omer, D.; Grinvald, A.; van Leeuwen, C.

10.1101/764068 — neuroscience — Posted on 2019-09-10

2449 Optimization and quantitative evaluation of fluorescence in situ hybridization chain reaction in intact fresh-frozen brain tissues

KUMAR, V.; KROLEWSKI, D. M.; HEBDA-BAUER, E. K.; PARSEGIAN, A.; MARTIN, B.; FOLTZ, M.; AKIL, H.; WATSON, S.

10.1101/763920 — neuroscience — Posted on 2019-09-10

2450 High-level cognition during story listening is reflected in high-order dynamic correlations in neural activity patterns

Owen, L. L. W.; Chang, T. H.; Manning, J. R.

10.1101/763821 — neuroscience — Posted on 2019-09-10

2451 Ifnar1 signaling breaks the hepatic urea cycle to regulate adaptive immunity

Lercher, A.; Bhattacharya, A.; Popa, A. M.; Caldera, M.; Schlapansky, M. F.; Baazim, H.; Majek, P.; Brunner, J. S.; Kosack, L. J.; Vitko, D.; Pinter, T.; Guertl, B.; Reil, D.; Kalinke, U.; Bennett, K. L.; Menche, J.; Cheng, P. N.; Schabbauer, G.; Trauner, M.; Klavins, K.; Bergthaler, A.

10.1101/762310 — immunology — Posted on 2019-09-10

2452 Dissection of the 4D chromatin structure of the α-globin locus through in vivo erythroid differentiation with extreme spatial and temporal resolution

Oudelaar, A. M.; Beagrie, R. A.; Gosden, M.; De Ornellas, S.; Georgiades, E.; Kerry, J.; Hidalgo, D.; Carrelha, J.; Shivalingam, A.; El-Sagheer, A. H.; Telenius, J. M.; Brown, T.; Buckle, V. J.; Socolovsky, M.; Higgs, D. R.; Hughes, J. R.

10.1101/763763 — genomics — Posted on 2019-09-10

2453 Transcriptomic profiling of plaque psoriasis and cutaneous T cell subsets during treatment with secukinumab

Liu, J. H.; Chang, H.-W.; Beck, K.; Sekhon, S.; Schmidt, T. H.; Yan, D.; Huang, Z.-M.; Yang, E.; Sanchez, I.; Nakamura, M.; Bhattarai, S.; Thibodeaux, Q.; Ahn, R. S.; Bhutani, T.; Rosenblum, M. D.; Liao, W.

10.1101/764118 — genomics — Posted on 2019-09-10

2454 The draft genome of the invasive coral Tubastraea sp.

Soares-Souza, G. B.; Amaral, D. L. A. S.; Torres, A. Q.; Batista, D.; Romão-Dumaresq, A. S.; Leomil, L.; Uliano-Silva, M.; Dondero, F.; Rebelo, M. d. F.

10.1101/756999 — genomics — Posted on 2019-09-10

2455 HELLS and PRDM9 form a Pioneer Complex to Open Chromatin at Meiotic Recombination Hotspots

Spruce, C.; Dlamini, S.; Ananda, G.; Bronkema, N.; Tian, H.; Paigen, K.; Carter, G. W.; Baker, C. L.

10.1101/764183 — genetics — Posted on 2019-09-10

2456 Temperature accounts for the biodiversity of a hyperdiverse group of insects in urban Los Angeles

McGlynn, T. P.; Meineke, E. K.; Bahlai, C. A.; Li, E.; Hartop, E. A.; Adams, B. J.; Brown, B. V.

10.1101/568212 — ecology — Posted on 2019-09-10

2457 Genomic Characterization of Posttraumatic Stress Disorder in a Large US Military Veteran Sample

Stein, M. B.; Levey, D. F.; Cheng, Z.; Wendt, F. R.; Harrington, K.; Cho, K.; Quaden, R.; Radhakrishnan, K.; Girgenti, M. J.; Ho, Y.-L. A.; Posner, D.; PTSD Working Group of the Psychiatric Genomics Consortium, ; Traumatic Stress Brain Research Study Group, ; VA Million Veteran Program, ; VA Cooperative Studies Program, ; Aslan, M.; Duman, R. S.; Zhao, H.; Polimanti, R.; Concato, J.; Gelernter, J.

10.1101/764001 — genetics — Posted on 2019-09-10

2458 Sex-specific transgenerational plasticity in threespined sticklebacks

Hellmann, J. K.; Bukhari, S. A.; Deno, J.; Bell, A. M.

10.1101/763862 — evolutionary biology — Posted on 2019-09-10

2459 Model-based species delimitation: are coalescent species reproductively isolated?

Campillo, L. C.; Barley, A. J.; Thomson, R. C.

10.1101/764092 — evolutionary biology — Posted on 2019-09-10

2460 Distribution and diversity of fish species exposed to artisanal fishery along the Sudanese Red Sea coast.

Olsen, E.; Axelsen, B. E.; Moland, E.; Palm, A. C. U.; Elamin, E. M.; Mukhtar, M. A.; Saleh, A. M.; Elamin, S. M.; Iragi, M. A.; Gumaa, S. G. F.

10.1101/763961 — ecology — Posted on 2019-09-10

2461 Common genetic variants shape broad patterns of within-population variation in gene expression.

Josephs, E. B.; Lee, Y. W.; Wood, C. W.; Schoen, D.; Wright, S.; Stinchcombe, J.

10.1101/763870 — evolutionary biology — Posted on 2019-09-10

2462 DeepMAsED: Evaluating the quality of metagenomic assemblies

Rojas-Carulla, M.; Ley, R. E.; Schoelkopf, B.; Youngblut, N. D.

10.1101/763813 — bioinformatics — Posted on 2019-09-10

2463 Induced RPB1 depletion reveals a direct gene-specific control of RNA Polymerase III function by RNA Polymerase II

Gerber, A.; Ito, K.; Chu, C.-S.; Roeder, R. G.

10.1101/764605 — molecular biology — Posted on 2019-09-10

2464 Evolutionary unique mechanistic framework of clathrin-mediated endocytosis in plants

Narasimhan, M.; Johnson, A.; Prizak, R.; Kaufmann, W. A.; Casillas-Pérez, B.; Friml, J.

10.1101/762906 — plant biology — Posted on 2019-09-10

2465 Homeostatic maintenance and age-related functional decline in the Drosophila ear

Keder, A.; Tardieu, C.; Malong, L.; Filia, A.; Kashkenbayeva, A.; Gale, J. E.; Lovett, M.; Jarman, A. P.; Albert, J. T.

10.1101/764670 — neuroscience — Posted on 2019-09-10

2466 Multidimensional and Multiresolution Ensemble Networks for Brain Tumor Segmentation

Murugesan, G. K.; Nalawade, S.; Bangalore Yogananda, C. G.; Wagner, B.; Fei, B.; Madhuranthakam, A.; Maldjian, J. A.

10.1101/760124 — neuroscience — Posted on 2019-09-10

2467 Long-term potentiation prevents ketamine-induced aberrant neurophysiological dynamics in the hippocampus-prefrontal cortex pathway in vivo

Lopes-Aguiar, C.; Ruggiero, R. N.; Rossignoli, M. T.; Esteves, I. d. M.; Peixoto Santos, J. E.; Romcy-Pereira, R. N.; Leite, J. P.

10.1101/763540 — neuroscience — Posted on 2019-09-10

2468 Identification of key determinants of Staphylococcus aureus vaginal colonization

Deng, L.; Schilcher, K.; Burcham, L. R.; Kwiecinski, J.; Johnson, P. M.; Head, S. R.; Heinrichs, D. E.; Horswill, A. R.; Doran, K.

10.1101/761841 — microbiology — Posted on 2019-09-10

2469 African Salmonella Typhimurium sequence type 313 lineage 2 evades MAIT cell recognition by overexpressing RibB

Preciado-Llanes, L.; Aulicino, A.; Canals, R.; Moynihan, P.; Zhu, X.; Jambo, N.; Nyirenda, T.; Kadwala, I.; Owen, S. V.; Veerapen, N.; Besra, G. S.; Gordon, M. A.; Hinton, J. C. D.; Napolitani, G.; Salio, M.; Simmons, A.

10.1101/762955 — immunology — Posted on 2019-09-10

2470 PDS5 proteins regulate the length of axial elements and telomere integrity during male mouse meiosis

Viera, A.; Berenguer, I.; Ruiz-Torres, M.; Gomez Lencero, R.; Guajardo, A.; Barbero, J. L.; Losada, A.; Suja, J. A.

10.1101/763797 — cell biology — Posted on 2019-09-10

2471 Multiplexed Nanometric 3D Tracking of Microbeads using a FFT-Phasor Algorithm

Brouwer, T.; Hermans, N.; van Noort, J.

10.1101/763706 — biophysics — Posted on 2019-09-10

2472 Magainin 2 and PGLa in Bacterial Membrane Mimics II: Membrane Fusion and Sponge Phase Formation

Kabelka, I.; Pachler, M.; Prevost, S.; Letofsky-Papst, I.; Lohner, K.; Pabst, G.; Vacha, R.

10.1101/763383 — biophysics — Posted on 2019-09-10

2473 AFM based elasticity of intestinal epithelium correlate with barrier function under drug action

Tejeda-Mora, H.; Stevens, L.; Gröllers, M.; Katan, A.; Steeg, E. v. d.; Heiden, M. v. d.

10.1101/761627 — biophysics — Posted on 2019-09-10

2474 Antipsychotic behavioral phenotypes in the mouse Collaborative Cross recombinant inbred inter-crosses (RIX)

Giusti-Rodriguez, P.; Xenakis, J.; Crowley, J. J.; Nonneman, R. J.; DeCristo, D. M.; Ryan, A.; Quackenbush, C. R.; Miller, D. R.; Shaw, G. D.; Zhabotynsky, V.; Sullivan, P.; Pardo-Manuel de Villena, F.; Zou, F.

10.1101/761353 — systems biology — Posted on 2019-09-10

2475 Complex genetic admixture histories reconstructed with Approximate Bayesian Computations

Fortes-Lima, C.; Laurent, R.; Thouzeau, V.; Toupance, B.; Verdu, P.

10.1101/761452 — genetics — Posted on 2019-09-10

2476 Draft genome sequences of Hirudo medicinalis and salivary transcriptome of three closely related medicinal leeches

Babenko, V. V.; Podgorny, O. V.; Manuvera, V. A.; Kasianov, A. S.; Manolov, A. I.; Grafskaia, E. N.; Shirokov, D. A.; Kurdyumov, A. S.; Vinogradov, D. V.; Nikitina, A. S.; Kovalchuk, S. I.; Anikanov, N. A.; Butenko, I. O.; Vakhitova, M. T.; Pobeguts, O. V.; Matushkina, D. S.; Rakitina, D. V.; Kostryukova, E. S.; Zgoda, V. G.; Trukhan, V. M.; Baskova, I. P.; Gelfand, M. S.; Govorun, V. M.; Schioth, H. B.; Lazarev, V. N.

10.1101/357681 — systems biology — Posted on 2019-09-10

2477 ATG13 dynamics in non-selective autophagy and mitophagy: insights from live imaging studies and mathematical modelling.

Dalle Pezze, P.; Karanasios, E.; Kandia, V.; Manifava, M.; Walker, S. A.; Gambardella Le Novere, N.; Ktistakis, N. T.

10.1101/370114 — systems biology — Posted on 2019-09-10

2478 Co-ordinated Ras and Rac activity shapes macropinocytic cups and enables phagocytosis of geometrically diverse bacteria

Buckley, C. M.; Pots, H.; Gueho, A.; Phillips, B. A.; Gilsbach, B.; Nikolaev, A.; Soldati, T.; Parnell, A. J.; Kortholt, A.; King, J. S.

10.1101/763748 — cell biology — Posted on 2019-09-10

2479 BET inhibition prevents aberrant RUNX1 and ERG transcription in STAG2 mutant leukaemia cells.

Antony, J.; Gimenez, G.; Taylor, T.; Khatoon, U.; Day, R. C.; Morison, I. M.; Horsfield, J.

10.1101/762781 — cancer biology — Posted on 2019-09-10

2480 DeepCryoPicker: Fully Automated Deep Neural Network for Single Protein Particle Picking in cryo-EM

Al-Azzawi, A.; Ouadou, A.; Highsmith, M. R.; Tanner, J.; Cheng, J.

10.1101/763839 — bioinformatics — Posted on 2019-09-10

2481 Metabolite therapy guided by liquid biopsy proteomics delays retinal neurodegeneration

Wert, K.; Velez, G.; Vijayalakshmi, K.; Shankar, V.; Sengillo, J.; Zare, R. N.; Bassuk, A. G.; Tsang, S. H.; Mahajan, V. B.

10.1101/764100 — biochemistry — Posted on 2019-09-10

2482 Skp1 Dimerization Conceals its F-box Protein Binding Site

Kim, H. W.; Eletsky, A.; Gonzalez, K. J.; van der Wel, H.; Strauch, E.-M.; Prestegard, J. H.; West, C. M.

10.1101/764126 — biochemistry — Posted on 2019-09-10

2483 Protein Tyrosine Phosphatase 1B Regulates MicroRNA-208b-Argonaute 2 Association and Thyroid Hormone Responsiveness in Cardiac Hypertrophy

Coulis, G.; Shi, Y.; Labbe, D. P.; Bergeron, A.; Sahmi, F.; Vinette, V.; Karsenty, G.; Allen, B. G.; Tremblay, M.; Tardif, J.-C.; Boivin, B.

10.1101/763953 — cell biology — Posted on 2019-09-10

2484 Expression Profile of Circular RNAs in Epicardial Adipose Tissue in Heart Failure

Yang, X.; Zheng, M.; Zhao, L.

10.1101/764266 — bioinformatics — Posted on 2019-09-10

2485 FARFAR2: Improved de novo Rosetta prediction of complex global RNA folds

Das, R.; Watkins, A. M.

10.1101/764449 — biochemistry — Posted on 2019-09-10

2486 Animal biosynthesis of complex polyketides in a photosynthetic partnership

Torres, J. P.; Lin, Z.; Winter, J. M.; Krug, P. J.; Schmidt, E. W.

10.1101/764225 — biochemistry — Posted on 2019-09-10

2487 Functional dissociation of theta oscillations in the frontal and visual cortices and their long-range network during sustained attention

Han, H.-B.; Lee, K. E.; Choi, J. H.

10.1101/684829 — neuroscience — Posted on 2019-09-10

2488 Oral RNAi of diap1 in a pest results in rapid reduction of crop damage

Chikami, Y.; Kawaguchi, H.; Suzuki, T.; Yoshioka, H.; Sato, Y.; Yaginuma, T.; Niimi, T.

10.1101/737643 — molecular biology — Posted on 2019-09-09

2489 Genomic insights into the Archaea inhabiting an Australian radioactive legacy site

Vazquez-Campos, X.; Kinsela, A. S.; Bligh, M. W.; Payne, T. E.; Wilkins, M. R.; Waite, T. D.

10.1101/728089 — microbiology — Posted on 2019-09-09

2490 Deceptive combined effects of short allele dominance and stuttering: an example with Ixodes scapularis, the main vector of Lyme disease in the U.S.A.

De Meeus, T.; Chan, C. T.; Ludwig, J. M.; Tsao, J. I.; Patel, J.; Bhagatwala, J.; Beati, L.

10.1101/622373 — evolutionary biology — Posted on 2019-09-09

2491 Transmembrane 163 (TMEM163) protein effluxes zinc

Sanchez, V. B.; Ali, S.; Escobar, A.; Cuajungco, M. P.

10.1101/692525 — cell biology — Posted on 2019-09-09

2492 Accuracy of serological tests for diagnosis of chronic pulmonary aspergillosis: a systematic review and meta-analysis

VOLPE CHAVES, C. E.; DO VALLE LEONE DE OLIVEIRA, S. M.; VENTURINI, J.; GRANDE, A. J.; SYLVESTRE, T. F.; PONCIO MENDES, R.; MELLO MIRANDA PANIAGO, A.

10.1101/763094 — pathology — Posted on 2019-09-09

2493 Motion displaces population receptive fields in the direction opposite to motion

Schneider, M.; Marquardt, I.; Sengupta, S.; De Martino, F.; Goebel, R. W.

10.1101/759183 — neuroscience — Posted on 2019-09-09

2494 A simple pyrocosm for studying soil microbial response to fire reveals a rapid, massive response by Pyronema species

Bruns, T. D.; Chung, J. A.; Carver, A. A.; Glassman, S.

10.1101/763169 — ecology — Posted on 2019-09-09

2495 Annual replication is essential in evaluating the response of the soil microbiome to the genetic modification of maize in different biogeographical regions

Tebbe, C. C.; Szobszlay, M.; Näther, A.; Mullins, E.

10.1101/763086 — microbiology — Posted on 2019-09-09

2496 Brettanomyces bruxellensis wine isolates show high geographical dispersal and long remanence in cellars

Cibrario, A.; Avramova, M.; Dimopoulou, M.; Magani, M.; Miot-Sertier, C.; Mas, A.; Portillo, M. C.; Ballestra, P.; Albertin, W.; Masneuf-Pomarede, I.; Dols-Lafargue, M.

10.1101/763441 — genetics — Posted on 2019-09-09

2497 Adaptive iron utilization compensates for the lack of an inducible uptake system in Naegleria fowleri and represents a potential target for therapeutic intervention

Arbon, D.; Zeniskova, K.; Mach, J.; Grechnikova, M.; Malych, R.; Talacko, P.; Sutak, R.

10.1101/763011 — biochemistry — Posted on 2019-09-09

2498 Inhibiting the copper efflux system in microbes as a novel approach for developing antibiotics

Meir, A.; Lepechkin-Zilbermintz, V.; Kahremany, S.; Schwerdtfeger, F.; Gevorkyan-Airapetov, L.; Munder, A.; Viskind, O.; Gruzman, A.; Ruthstein, S.

10.1101/763185 — biochemistry — Posted on 2019-09-09

2499 Heritable Variation in Learning Phenotypes Drive Collective Cognition

Cook, C. N.; Lemanski, N. J.; Mosqueiro, T.; Ozturk, C.; Gadau, J.; Pinter-Wollman, N.; Smith, B. H.

10.1101/761676 — animal behavior and cognition — Posted on 2019-09-09

2500 Efficacy of aerial forward-looking infrared surveys for detecting polar bear maternal dens

Smith, T. S.; Amstrup, S. C.; Kirschhoffer, J.; York, G.

10.1101/763144 — zoology — Posted on 2019-09-09

2501 Road traffic delays and musculoskeletal health complaints among full-time bank employees: A cross-sectional study in Dhaka city

Ali, M.; Ahsan, G. U.; Uddin, Z.; Hossain, A.

10.1101/763052 — scientific communication and education — Posted on 2019-09-09

2502 Baobab Diversity, Seed Germination and Early Growth

Egbadzor, K. F.

10.1101/763177 — plant biology — Posted on 2019-09-09

2503 A low dose of simvastatin enhanced the therapeutic efficacy of mesenchymal stem cell (MSC) transplantation in skin wound healing in diabetic mice associated with increases in pAkt, SDF-1, and angiogenesis

Sukpat, S.; Israsena, N.; Wongphoom, J.; Ingrungruanglert, P.; Sim, T. M.; Patumraj, S.

10.1101/763417 — physiology — Posted on 2019-09-09

2504 Glucose availability impacts proteotoxic stress in Caenorhabditis elegans

Farris, M.; Gatrell, L.; Wilkins, W.; Rana, P.

10.1101/763060 — neuroscience — Posted on 2019-09-09

2505 Alcohol Drinking Exacerbates Neural and Behavioral Pathology in the 3xTg-AD Mouse Model of Alzheimer’s Disease

Hoffman, J. L.; Faccidomo, S.; Kim, M.; Taylor, S. M.; Agoglia, A. E.; May, A. M.; Smith, E. N.; Wong, L.; Hodge, C. W.

10.1101/726307 — neuroscience — Posted on 2019-09-09

2506 Common neurodegeneration-associated proteins are physiologically expressed by antigen-presenting cells and are interconnected via the inflammation/autophagy-related proteins TRAF6 and SQSTM1

Nataf, S.; Guillen, M.; Pays, L.

10.1101/690677 — immunology — Posted on 2019-09-09

2507 Single Cell RNA-seq reveals ectopic and aberrant lung resident cell populations in Idiopathic Pulmonary Fibrosis

Adams, T. S.; Schupp, J. C.; Poli, S.; Ayaub, E. A.; Neumark, N.; Ahangari, F.; Chu, S. G.; Raby, B. A.; DeIuliis, G.; Januszyk, M.; Duan, Q.; Arnett, H. A.; Siddiqui, A.; Washko, G. R.; Homer, R.; Yan, X.; Rosas, I. O.; Kaminski, N.

10.1101/759902 — genomics — Posted on 2019-09-09

2508 Co-circulation of Dengue Virus Serotypes 1 and 3 during the 2019 epidemic in Dar es Salaam, Tanzania

Mwanyika, G. O.; Mboera, L.; Rugarabamu, S.; Lutwama, J.; Sindato, C.; Paweska, J.; Misinzo, G.

10.1101/763003 — genomics — Posted on 2019-09-09

2509 Root production in a subtropical pasture is mediated by cultivar and defoliation severity

Wilson, C.; Vendramini, J. M.; Sollenberger, L. E.; Flory, S. L.

10.1101/763128 — ecology — Posted on 2019-09-09

2510 ASK1/p38-mediated NLRP3 inflammasome signaling pathway contributed to aberrant retinal angiogenesis in diabetic retinopathy

Zou, W.; Zhang, Z.; Luo, S.; Cheng, L.; Huang, X.; Ding, N.; Yu, J.; Pan, Y.; Wu, Z.

10.1101/763102 — cell biology — Posted on 2019-09-09

2511 A unified simulation model for understanding the diversity of cancer evolution

Niida, A.; Hasegawa, T.; Shibata, T.; Mimori, K.; Miyano, S.

10.1101/762997 — cancer biology — Posted on 2019-09-09

2512 Convolutional neural networks for mild diabetic retinopathy detection: An experimental study

Sarki, R.; Michalska, S.; Ahmed, K.; Wang, H.; Zhang, Y.

10.1101/763136 — bioinformatics — Posted on 2019-09-09

2513 Large-scale Analyses of Disease Biomarkers andApremilast Pharmacodynamic Effects

Medvedeva, I. V.; Stokes, M. E.; Eisinger, D.; LaBrie, S. T.; Ai, J.; Trotter, M. W. B.; Schafer, P.; Yang, R.

10.1101/652875 — bioinformatics — Posted on 2019-09-09

2514 Structural and functional analysis of genes with potential involvement in resistance to coffee leaf rust: a functional marker based approach

Barka, G. D.; Caixeta, E. T.; Ferreira, S. S.; Zambolim, L.

10.1101/763425 — pathology — Posted on 2019-09-09

2515 BWGS: a R package for genomic selection and its application to a wheat breeding programme.

Charmet, G.; Bouchet, S.; Tran, L.-G.; Auzanneau, J.; Rincent, R.

10.1101/763037 — genetics — Posted on 2019-09-09

2516 Limits to Genomic Divergence Under Sexually Antagonistic Selection

Kasimatis, K. R.; Ralph, P. L.; Phillips, P. C.

10.1101/591610 — evolutionary biology — Posted on 2019-09-09

2517 Non-genetic intra-tumor heterogeneity is a major predictor of phenotypic heterogeneity and ongoing evolutionary dynamics in lung tumors

Sharma, A.; Merritt, E.; Hu, X.; Cruz, A.; Jiang, C.; Sarkodie, H.; Zhou, Z.; Malhotra, J.; Riedlinger, G. M.; De, S.

10.1101/698845 — cancer biology — Posted on 2019-09-09

2518 Microbiome-wide characterization of post-translational modifications

Cheng, K.; Ning, Z.; Zhang, X.; Li, L.; Liao, B.; Mayne, J.; Figeys, D.

10.1101/753996 — bioinformatics — Posted on 2019-09-09

2519 Time-resolved proteomic profile of Amblyomma americanum tick saliva during feeding

Kim, T.; Tirloni, L.; Pinto, A.; Diedrich, J.; Moresco, J.; Yates, J. R.; da Silva Vaz, I.; Mulenga, A.

10.1101/763029 — systems biology — Posted on 2019-09-09

2520 The positive role of noise for information acquisition in biological signaling pathways

Azpeitia, E.; Wagner, A.

10.1101/762989 — systems biology — Posted on 2019-09-09

2521 Review of layperson screening tools and model for a holistic mental health screener in lower and middle income countries

Aderibigbe, O. O.; Perlman, C. M.

10.1101/763045 — scientific communication and education — Posted on 2019-09-09

2522 Impaired liver regeneration and lipid homeostasis in CCl4 treated WDR13 deficient mice

Mishra, A. P.; Siva, A. B.; Gurunathan, C.; Yedella, K.; Lakshmi, B. J.

10.1101/763433 — pharmacology and toxicology — Posted on 2019-09-09

2523 Predicting neuropsychiatric symptoms of Parkinsons disease with measures of striatal dopaminergic deficiency

Bishnoi, R.; Badir, M.; Surya, S.; Youssef, N. A.

10.1101/763110 — neuroscience — Posted on 2019-09-09

2524 Adaptation mechanism of the adult zebrafish respiratoryorgan to endurance training

Messerli, M.; Aaldijk, D.; Haberthür, D.; Röss, H.; Sande-Melon, M.; Garcia-Poyatos, C.; Khoma, O.-Z.; Wieland, F. A. M.; Fark, S.; Djonov, V.

10.1101/744300 — developmental biology — Posted on 2019-09-09

2525 Polymer-like model to study the dynamics of dynamin filaments on deformable membrane tubes

Noel, J. K.; Noe, F.; Daumke, O.; Mikhailov, A.

10.1101/686873 — biophysics — Posted on 2019-09-09

2526 Visualising nascent chain dynamics at the ribosome exit tunnel by cryo-electron microscopy

Javed, A.; Cassaignau, A. M. E.; Wlodarski, T.; Cabrita, L.; Christodoulou, J.; Orlova, E. V.

10.1101/722611 — biophysics — Posted on 2019-09-09

2527 Tunable self-cleaving ribozymes for modulating gene expression in eukaryotic systems

Jacobsen, T.; Yi, G.; Al Asafen, H.; Jermusyk, A. A.; Beisel, C. L.; Reeves, G. T.

10.1101/739326 — bioengineering — Posted on 2019-09-09

2528 A Computational Framework to Study the Primary Lifecycle Metabolism of Arabidopsis thaliana

Schroeder, W. L.; Saha, R.

10.1101/761189 — systems biology — Posted on 2019-09-09

2529 aWCluster: A Novel integrative Network-based Clustering of Multiomics Breast Cancer Data

Pouryahya, M.; Oh, J. H.; Javanmard, P.; Mathews, J. C.; Belkhatir, Z.; Deasy, J. O.; Tannenbaum, A. R.

10.1101/558700 — genomics — Posted on 2019-09-09

2530 Single cell ATAC-seq in human pancreatic islets and deep learning upscaling of rare cells reveals cell-specific type 2 diabetes regulatory signatures

Rai, V.; Quang, D. X.; Erdos, M. R.; Cusanovich, D. A.; Daza, R. M.; Narisu, N.; Zou, L. S.; Didion, J. P.; Guan, Y.; Shendure, J.; Parker, S. C. J.; Collins, F. S.

10.1101/749283 — genomics — Posted on 2019-09-09

2531 Polygenic Risk Scores for Cardio-renal-metabolic Diseases in the Penn Medicine Biobank

Kember, R.; Verma, A.; Verma, S. S.; Lucas, A.; Judy, R.; Chen, J.; Regeneron Genetics Center, ; Damrauer, S.; Rader, D. J.; Ritchie, M. D.

10.1101/759381 — genomics — Posted on 2019-09-09

2532 Genetic contributions to variation in human stature in prehistoric Europe

Cox, S. L.; Ruff, C. B.; Maier, R. M.; Mathieson, I.

10.1101/690545 — evolutionary biology — Posted on 2019-09-09

2533 Does macroscale grey matter morphometry have personality?

Valk, S. L.; Hoffstaedter, F.; Camilleri, J.; Kochunov, P.; Yeo, B. T. T.; Eickhoff, S. B.

10.1101/645945 — neuroscience — Posted on 2019-09-09

2534 Direct current stimulation boosts Hebbian plasticity in vitro

Kronberg, G.; Rahman, A.; Sharma, M.; Bikson, M.; Parra, L. C.

10.1101/562322 — neuroscience — Posted on 2019-09-09

2535 Genomic insights into the Archaea inhabiting an Australian radioactive legacy site

Vazquez-Campos, X.; Kinsela, A. S.; Bligh, M. W.; Payne, T. E.; Wilkins, M. R.; Waite, T. D.

10.1101/728089 — microbiology — Posted on 2019-09-09

2536 Emergent microscale gradients give rise to metabolic cross-feeding and antibiotic tolerance in clonal bacterial populations

Dal Co, A.; van Vliet, S.; Ackermann, M.

10.1101/534149 — microbiology — Posted on 2019-09-09

2537 3D cell culture stimulates the secretion of in vivo like extracellular vesicles

Thippabhotla, S.; Zhong, C.; He, M.

10.1101/556621 — bioengineering — Posted on 2019-09-09

2538 Mutation of the ALBOSTRIANS Ohnologous Gene HvCMF3 Impairs Chloroplast Development and Thylakoid Architecture in Barley due to Reduced Plastid Translation

Li, M.; Hensel, G.; Melzer, M.; Junker, A.; Tschiersch, H.; Arend, D.; Kumlehn, J.; Boerner, T.; Stein, N.

10.1101/756833 — genetics — Posted on 2019-09-09

2539 LAB-AID (Laboratory Automated Interrogation of Data): an interactive web application for visualization of multi-level data from biological experiments

Kozic, Z.; Booker, S.; Dando, O.; Kind, P.

10.1101/763318 — bioinformatics — Posted on 2019-09-09

2540 Does higher sampling rate (Multiband + SENSE) benefit the detection of task correlated BOLD for cognitive neuroscience applications at 3T?

Bhandari, R.; Kirilina, E.; Caan, M.; Suttrup, J.; de Sanctis, T.; de Angelis, L.; Keysers, C.; Gazzola, V.

10.1101/762831 — neuroscience — Posted on 2019-09-09

2541 A finite vocabulary of antibody-antigen interaction enables predictability of paratope-epitope binding

Akbar, R.; Jeliazkov, J. R.; Robert, P. A.; Snapkov, I.; Pavlovic, M.; Slabodkin, A.; Weber, C. R.; Safanova, Y.; Sandve, G. K.; Greiff, V.

10.1101/759498 — immunology — Posted on 2019-09-09

2542 Eosinophil deficiency promotes aberrant repair and adverse remodelling following acute myocardial infarction

Toor, I. S.; Ruckerl, D.; Mair, I.; Ainsworth, R.; Meloni, M.; Spiroski, A.-M.; Felton, J. M.; Thomson, A.; Caporali, A.; Keeble, T.; Tang, K.; Rossi, A. G.; Newby, D. E.; Allen, J. E.; Gray, G. A.

10.1101/750133 — immunology — Posted on 2019-09-09

2543 Estimating a novel stochastic model for within-field disease dynamics of banana bunchy top virus via approximate Bayesian computation

Varghese, A.; Drovandi, C.; Mira, A.; Mengersen, K.

10.1101/762765 — systems biology — Posted on 2019-09-09

2544 Color-specific porosity in double pigmented natural 3d-nanoarchitectures of blue crab shell

Pinzaru, S.; Nekvapil, F.; Barbu-Tudoran, L.; Suciu, M.; Glamuzina, B.; Tamas, T.; Chis, V.

10.1101/762948 — molecular biology — Posted on 2019-09-09

2545 Repression of Viral Gene Expression and Replication by the Unfolded Protein Response Effector XBP1u

Hinte, F.; van Anken, E.; Tirosh, B.; Brune, W.

10.1101/763227 — microbiology — Posted on 2019-09-09

2546 Identification and quantification of meat product ingredients by whole-genome metagenomics (All-Food-Seq)

Hellmann, S. L.; Ripp, F.; Bikar, S.-E.; Schmidt, B.; Koeppel, R.; Hankeln, T.

10.1101/763458 — genomics — Posted on 2019-09-09

2547 Human microbiome sequences in the light of the Nubeam

Dai, H.; Guan, Y.

10.1101/763631 — genetics — Posted on 2019-09-09

2548 Integrated evolutionary and structural analysis reveals xenobiotics and pathogens as the major drivers of mammalian adaptation

Slodkowicz, G.; Goldman, N.

10.1101/762690 — evolutionary biology — Posted on 2019-09-09

2549 Exploratory movement analysis and report building with R package stmove

Seidel, D. P.; Dougherty, E. R.; Getz, W.

10.1101/758987 — ecology — Posted on 2019-09-09

2550 A versatile bulk electrotransfection protocol for mouse embryonic fibroblast and iPS cells

Eghbalsaied, S.; Hyder, I.; Kues, W.

10.1101/763615 — genetics — Posted on 2019-09-09

2551 Bathymetric and geographical trends in growth of golden redfish (Sebastes norvegicus)

Llopis Monferrer, N.; Planque, B.

10.1101/739060 — ecology — Posted on 2019-09-09

2552 Designing of a mini-core that effectively represents 3004 diverse accessions of rice

Kumar, A.; Kumar, S.; Prasad, M.; Thakur, J. K.

10.1101/762070 — plant biology — Posted on 2019-09-09

2553 A kinetic operational model of agonism incorporating receptor desensitization for G-protein-coupled receptors

Hoare, S. R. J.; Hall, D. A.; Bridge, L. J.

10.1101/761726 — pharmacology and toxicology — Posted on 2019-09-09

2554 FMRP binding to a ranked subset of long genes is revealed by coupled CLIP and TRAP in specific neuronal cell types

Van Driesche, S. J.; Sawicka, K.; Zhang, C.; Hung, S. K. Y.; Park, C. Y.; Fak, J. J.; Yang, C.; Darnell, R. B.; Darnell, J. C.

10.1101/762500 — neuroscience — Posted on 2019-09-09

2555 Genetic Basis Of De Novo Appearance Of Carotenoid Ornamentation In Bare-Parts Of Canaries

Gazda, M. A.; Toomey, M. B.; Araujo, P. M.; Lopes, R. J.; Afonso, S.; Myers, C. A.; Serres, K.; Kiser, P. D.; Hill, G.; Corbo, J. C.; Carneiro, M.

10.1101/762112 — evolutionary biology — Posted on 2019-09-09

2556 Gene flow and species delimitation in fishes of Western North America: Flannelmouth (Catostomus latipinnis) and Bluehead sucker (C. Pantosteus discobolus)

Bangs, M. R.; Douglas, M. R.; Chafin, T. K.; Douglas, M. E.

10.1101/763532 — evolutionary biology — Posted on 2019-09-09

2557 On the delay in propagation of action potentials

Xu, J.; Xu, S.; Wang, F.; Xu, S.

10.1101/763698 — biophysics — Posted on 2019-09-09

2558 Systematical analysis reveals the novel function of Cyp2c29 in liver injury

Zhu, Y.; Wang, Q.; Tang, Q.; Zhao, L.; Zhang, Q.; Wu, Y.; Hu, H.; Liu, L.-L.; Liu, X.; Guo, A.-Y.; Yang, X.

10.1101/763581 — bioinformatics — Posted on 2019-09-09

2559 Electrophysiological network alterations in adults with copy number variants associated with high neurodevelopmental risk

Dima, D. C.; Adams, R.; Linden, S. C.; Baird, A.; Smith, J.; Foley, S.; Perry, G.; Routley, B. C.; Magazzini, L.; Drakesmith, M.; Williams, N.; Doherty, J.; van den Bree, M. B.; Owen, M. J.; Hall, J.; Linden, D. E. J.; Singh, K. D.

10.1101/753145 — neuroscience — Posted on 2019-09-09

2560 High-resolution melt curve analysis for rapid detection of rifampicin resistance in mycobacterium tuberculosis: A single-center study in Iran

Arefzadeh, S.; Nasiri, M. J.; Azimi, T.; Nikpor, Z.; Dabiri, H.; Doustdar, F.; Goudarzi, H.; Alahyar, M.

10.1101/754093 — microbiology — Posted on 2019-09-09

2561 A novel and direct mobilome approach improves the detection of larger-sized circular elements across kingdoms

Alanin, K. S.; Joergensen, T. S.; Browne, P. D.; Petersen, B.; Riber, L.; Kot, W. P.; Hansen, L. H.

10.1101/761098 — microbiology — Posted on 2019-09-09

2562 Mendelian randomisation study exploring the associations of serum folate with pan and site-specific cancers

Burrows, K.; Kazmi, N.; Haycock, P.; Tsilidis, K. K.; PRACTICAL consortium, CRUK, BPC3, CAPS and PEGASUS, ; GECCO, CORECT and CCFR, ; Martin, R. M.; Lewis, S. J.

10.1101/762138 — genomics — Posted on 2019-09-09

2563 Case-Control Vs. Case-Only Estimates Of Gene-Environment Interactions With Common And Misclassified Clinical Diagosis

Lobach, I.; Sheng, Y.; Lobach, S.; Zablotska, L.; Huang, C.-Y.

10.1101/760322 — genetics — Posted on 2019-09-09

2564 Ultra-Conserved Elements and morphology reciprocally illuminate conflicting phylogenetic hypotheses in Chalcididae (Hymenoptera, Chalcidoidea)

cruaud, a.; Delvare, G.; Nidelet, S.; Saune, L.; Ratnasingham, S.; Chartois, M.; Blaimer, B. B.; Gates, M.; Brady, S. G.; Faure, S.; van Noort, S.; Rossi, J.-P.; Rasplus, j.-y.

10.1101/761874 — evolutionary biology — Posted on 2019-09-09

2565 Fitness functions, genetic and non-genetic inheritance, and why ecological dynamics and evolution are inevitably linked

Coulson, T.; Potter, T.; Felmy, A.

10.1101/762658 — evolutionary biology — Posted on 2019-09-09

2566 Chemical variations in Quercus pollen as a tool for taxonomic identification: implications for long-term ecological and biogeographic research

Florian, M.; Zimmermann, B.; Birks, H. J. B.; Vila-Vicosa, C.; Seddon, A. W. R.

10.1101/761148 — ecology — Posted on 2019-09-09

2567 How to Pare a Pair: Topology Control and Pruning in Intertwined Complex Networks.

Kramer, F.; Modes, C. D.

10.1101/763649 — biophysics — Posted on 2019-09-09

2568 The structure of the iron-catecholate transporter Fiu suggests substrate import occurs via a 2-step mechanism

Grinter, R.; Lithgow, T.

10.1101/763268 — biochemistry — Posted on 2019-09-09

2569 Third-party prosocial behavior in adult female rats is impaired after perinatal fluoxetine exposure

Heinla, I.; Heijkoop, R.; Houwing, D. J.; Olivier, J. D. A.; Snoeren, E. M. S.

10.1101/763276 — animal behavior and cognition — Posted on 2019-09-09

2570 Changes in ambient temperature are the prevailing cue in determining Brachypodium distachyon diurnal gene regulation

MacKinnon, K. J.-M.; Cole, B. J.; Yu, C.; Coomey, J. H.; Hartwick, N. T.; Remigereau, M.-S.; Duffy, T.; Michael, T. P.; Kay, S. A.; Hazen, S. P.

10.1101/762021 — plant biology — Posted on 2019-09-09

2571 Draft genome sequence of a popular Indian tea genotype TV-1

Mondal, T. K.; Rawal, H. C.; Bera, B.; Mohan Kumar, P.; Choubey, M.; Saha, G.; Das, B.; Bandyopadhyay, T.; Ilango, R. V. J.; Sharma, T. R.; Barua, A.; Radhakrishnan, B.; Singh, N. K.

10.1101/762161 — plant biology — Posted on 2019-09-09

2572 Neuro-Current Response Functions: A Unified Approach to MEG Source Analysis under the Continuous Stimuli Paradigm

Das, P.; Brodbeck, C.; Simon, J. Z.; Babadi, B.

10.1101/761999 — neuroscience — Posted on 2019-09-09

2573 In your phase! Neural phase synchronization underlies visual imagery of faces

Canales-Johnson, A.; Lanfranco, R. C.; Noreika, V.; Morales, J. P.; Martinez-Pernia, D.; Valdes, J.; Ezquerro-Nassar, A.; Rivera-Rei, A.; Bekinschtein, T.; Rodriguez, E.; Chennu, S.; Ibanez, A.; Huepe, D.

10.1101/762062 — neuroscience — Posted on 2019-09-09

2574 Single Volume Image Generator and Deep Learning-based ASD Classification

Ahmed, M. R.; Zhang, Y.; Liao, H.

10.1101/763292 — neuroscience — Posted on 2019-09-09

2575 The scale-invariant, temporal profile of neuronal avalanches in relation to cortical γ-oscillations

Miller, S.; Yu, S.; Plenz, D.

10.1101/757278 — neuroscience — Posted on 2019-09-09

2576 Structural Diversity of B-Cell Receptor Repertoires along the B-cell Differentiation Axis in Humans and Mice

Kovaltsuk, A.; Raybould, M. I. J.; Wong, W. K.; Marks, C.; Kelm, S.; Snowden, J.; Trück, J.; Deane, C. M.

10.1101/762880 — immunology — Posted on 2019-09-09

2577 High pressure inhibits signaling protein binding to the flagellar motor and bacterial chemotaxis through enhanced hydration

Hata, H.; Nishihara, Y.; Nishiyama, M.; Sowa, Y.; Kawagishi, I.; Kitao, A.

10.1101/762922 — biophysics — Posted on 2019-09-09

2578 An evaluation of Nephrology Literature for Transparency and Reproducibility Indicators: Cross-sectional Review

Fladie, I.; Adewumi, T.; Vo, N.; Tritz, D.; Vassar, M.

10.1101/756486 — bioinformatics — Posted on 2019-09-09

2579 Using nano zero valent iron supported on diatomite to remove acid blue dye: synthesis, characterization and toxicology test

Justo-Cabrera, E.; Flores-Rojas, E.; Schnabel, D.; Poggi-Varaldo, H.; Solorza-Feria, O.; Breton-Deval, L.

10.1101/755975 — bioengineering — Posted on 2019-09-09

2580 Global Effects of Feature-based Attention Depend on Surprise

Smout, C. A.; Garrido, M. I.; Mattingley, J. B.

10.1101/747204 — neuroscience — Posted on 2019-09-09

2581 NHJ-1 regulates canonical non-homologous end joining in Caenorhabditis elegans

Vujin, A.; Jones, S.; Zetka, M.

10.1101/763235 — genetics — Posted on 2019-09-09

2582 To infect or not to infect: molecular determinants of bacterial outer membrane vesicle internalization by host membranes

Khalid, S.; Jefferies, D.

10.1101/763334 — biophysics — Posted on 2019-09-09

2583 The BLAD Interactome: Visualization and Analysis of the Interaction Network of Proteins Associated with Blood-cell targeting Autoimmune Diseases

Amanatidou, A. I.; Nastou, K. C.; Tsitsilonis, O. E.; Iconomidou, V. A.

10.1101/763672 — bioinformatics — Posted on 2019-09-09

2584 Salt-free fractionation of complex isomeric mixtures of glycosaminoglycan oligosaccharides compatible with ESI-MS and microarray analysis

Liu, H.; Joshi, A.; Chopra, P.; Liu, L.; Boons, G.-J.; Sharp, J. S.

10.1101/759993 — biochemistry — Posted on 2019-09-09

2585 Gnrh1-induced responses are indirect in female medaka Fsh cells

Hodne, K.; Fontaine, R.; Ager-Wick, E.; Weltzien, F.-A.

10.1101/763250 — physiology — Posted on 2019-09-09

2586 An alternative mechanism of early nodal clustering and myelination onset in GABAergic neurons of the central nervous system

Thetiot, M.; Freeman, S. A.; Roux, T.; Dubessy, A.-L.; Aigrot, M.-S.; Rappeneau, Q.; Lejeune, F.-X.; Tailleur, J.; Sol-Foulon, N.; Lubetzki, C.; Desmazieres, A.

10.1101/763573 — neuroscience — Posted on 2019-09-09

2587 A nonlinear relationship between prediction errors and learning rates in human reinforcement learning

Pulcu, E.

10.1101/751222 — neuroscience — Posted on 2019-09-09

2588 An improved Xer-cise technology for the generation of multiple unmarked mutants in Mycobacteria

Boudehen, Y.-M.; Wallat, M.; Rousseau, P.; Neyrolles, O.; Gutierrez, C.

10.1101/758037 — microbiology — Posted on 2019-09-09

2589 Genome reorganization prior to mitosis shapes the generation of adaptive immunity

Chan, W. F.; Coughlan, H. D.; Zhou, J. H.; Keenan, C. R.; Bediaga, N.; Hodgkin, P. D.; Smyth, G.; Johanson, T. M.; Allan, R. S.

10.1101/762757 — genomics — Posted on 2019-09-09

2590 The Dynamics of Cytoplasmic mRNA Metabolism

Eisen, T. J.; Eichhorn, S. W.; Subtelny, A. O.; Lin, K. S.; McGeary, S. E.; Gupta, S.; Bartel, D. P.

10.1101/763599 — genomics — Posted on 2019-09-09

2591 MicroRNAs Cause Accelerated Decay of Short-Tailed Target mRNAs

Eisen, T. J.; Eichhorn, S. W.; Subtelny, A. O.; Bartel, D. P.

10.1101/763367 — genomics — Posted on 2019-09-09

2592 Physical activity and risks of breast and colorectal cancer: A Mendelian randomization analysis

Papadimitriou, N.; Dimou, N.; Tsilidis, K. K.; Banbury, B.; Martin, R.; Lewis, S.; Kazmi, N.; Robinson, T. M.; Albanes, D.; Aleksandrova, K.; Berndt, S. I.; Bishop, D. T.; Brenner, H.; Buchanan, D. D.; Bueno-de-Mesquita, B.; Campbell, P. T.; Castellvi-Bel, S.; Chan, A. T.; Chang-Claude, J.; Ellingjord-Dale, M.; Figueiredo, J. C.; Gallinger, S. J.; Giles, G. G.; Giovannucci, E.; Gruber, S. B.; Gsur, A.; Hampe, J.; Hampel, H.; Harlid, S.; Harrison, T. A.; Hoffmeister, M.; Hopper, J. L.; Hsu, L.; Huerta, J. M.; Huyghe, J. R.; Jenkins, M. A.; Keku, T. O.; Kuhn, T.; La Vecchia, C.; Le Marchand, L.;

10.1101/762484 — genetics — Posted on 2019-09-09

2593 Complement component 4 genes contribute sex-specific vulnerability in diverse illnesses

Kamitaki, N.; Sekar, A.; Handsaker, R. E.; de Rivera, H.; Tooley, K.; Morris, D. L.; Taylor, K. E.; Whelan, C. W.; Tombleson, P.; Olde Loohuis, L. M.; Schizophrenia Working Group of the Psychiatric Genomics Consortium, ; Boehnke, M.; Kimberly, R. P.; Kaufman, K. M.; Harley, J. B.; Langefeld, C. D.; Seidman, C. E.; Pato, M. T.; Pato, C. N.; Ophoff, R. A.; Graham, R. R.; Criswell, L. A.; Vyse, T. J.; McCarroll, S. A.

10.1101/761718 — genetics — Posted on 2019-09-09

2594 Single-cell resolution view of the transcriptional landscape of developing Drosophila eye.

Ejsmont, R. K.; Houser, G.; Mora Garcia, N.; Fonseca-Topp, S.; Danda, N.; Wong-Chung, A.; Hassan, B. A.

10.1101/763243 — developmental biology — Posted on 2019-09-09

2595 The role of the diencephalon in the guidance of thalamocortical axons in mice

Quintana-Urzainqui, I.; Hernandez-Malmierca, P.; Clegg, J.; Li, Z.; Price, D. J.

10.1101/763201 — developmental biology — Posted on 2019-09-09

2596 Early pathological signs in young dysf-/- mice are improved by halofuginone

Barzilai-Tutsch, H.; Genin, O.; Pines, M.; Halevy, O.

10.1101/762732 — cell biology — Posted on 2019-09-09

2597 Re-definition of claudin-low as a breast cancer phenotype

Fougner, C.; Bergholtz, H.; Norum, J. H.; Sorlie, T.

10.1101/756411 — cancer biology — Posted on 2019-09-09

2598 Mendelian Randomization with Instrumental Variable Synthesis (IVY)

Kuang, Z.; Cordova-Palomera, A.; Sala, F.; Wu, S.; Dunnmon, J.; Re, C.; Priest, J. R.

10.1101/657775 — bioinformatics — Posted on 2019-09-09

2599 OmicsX: a web server for integrated OMICS analysis

Pan, J.; Qian, J.; Zhang, H.

10.1101/755918 — bioinformatics — Posted on 2019-09-09

2600 Long-term metabolic consequences of acute dioxin exposure differ between male and female mice

Hoyeck, M. P.; Blair, H.; Ibrahim, M.; Solanki, S.; Elsawy, M.; Prakash, A.; Rick, K. R.; Matteo, G.; O'Dwyer, S.; Bruin, J. E.

10.1101/762476 — pharmacology and toxicology — Posted on 2019-09-09

2601 Antidepressants act by binding to the cholesterol-interaction site at TRKB neurotrophin receptor

Casarotto, P. C.; Girych, M.; Fred, S. M.; Moliner, R.; Enkavi, G.; Biojone, C.; Cannarozzo, C.; Brunello, C.; Winkel, F.; Steinzeig, A.; Patil, S.; Vestrig, S.; Serchov, T.; Laukkanen, L.; Cardon, I.; Antila, H.; Rog, T.; Bramham, C.; Normann, C.; Lauri, S.; Vattulainen, I.; Castren, E.

10.1101/757989 — neuroscience — Posted on 2019-09-09

2602 Functional connectome contractions in temporal lobe epilepsy

Lariviere, S.; Wang, Y.; Vos de Wael, R.; Frauscher, B.; Wang, Z.; Bernasconi, A.; Bernasconi, N.; Schrader, D.; Zhang, Z.; Bernhardt, B.

10.1101/756494 — neuroscience — Posted on 2019-09-09

2603 Genomic expansion of archaeal lineages resolved from deep Costa Rica sediments

Farag, I. F.; Biddle, J.; Zhao, R.; Martino, A.; House, C.; Leon-Zayas, R.

10.1101/763623 — microbiology — Posted on 2019-09-09

2604 Linker Histone H1 subtypes specifically regulate neutrophil differentiation

Sollberger, G.; Streeck, R.; Caffrey, B. E.; Zychlinsky, A.

10.1101/763482 — immunology — Posted on 2019-09-09

2605 High content analysis of granuloma histology and neutrophilic inflammation in adult zebrafish infected with Mycobacterium marinum

Cheng, T.; Kam, J. Y.; Johansen, M. D.; Oehlers, S.

10.1101/762740 — immunology — Posted on 2019-09-09

2606 Embryonic expression patterns of panarthropod Teneurin-m/odd Oz genes suggest a possible function in segmentation

Janssen, R.

10.1101/762971 — evolutionary biology — Posted on 2019-09-09

2607 Null models for community dynamics: Beware of the cyclic shift algorithm

Kalyuzhny, M.

10.1101/762278 — ecology — Posted on 2019-09-09

2608 Muscle function and homeostasis require macrophage-derived cytokine inhibition of AKT activity in Drosophila

Kierdorf, K.; Hersperger, F.; Sharrock, J.; Vincent, C. M.; Ustaoglu, P.; Dou, J.; Gyoergy, A.; Gross, O.; Siekhaus, D. E.; Dionne, M. S.

10.1101/763557 — developmental biology — Posted on 2019-09-09

2609 CNS Glycosylphosphatidylinositol Deficiency Results in Delayed White Matter Development, Ataxia, and Premature Death in a Novel Mouse Model

Lukacs, M.; Stottmann, R. W.

10.1101/763490 — developmental biology — Posted on 2019-09-09

2610 Microtubules deform the nucleus and force chromatin reorganization during early differentiation of human hematopoietic stem cells.

Biedzinski, S.; Faivre, L.; Vianay, B.; Delord, M.; Blanchoin, L.; Larghero, J.; Thery, M.; Brunet, S.

10.1101/763326 — cell biology — Posted on 2019-09-09

2611 Capacitation-associated alkalization in human sperm is differentially controlled at the subcellular level

Matamoros-Volante, A.; Trevino, C. L.

10.1101/763987 — cell biology — Posted on 2019-09-09

2612 Chromatin is frequently unknotted at the megabase scale

Goundaroulis, D.; Aiden, E. L.; Stasiak, A.

10.1101/762872 — bioinformatics — Posted on 2019-09-09

2613 Myocardial ischemia-reperfusion injury is attenuated by sodium arsenite which inhibits NLRP3 inflammasome activation and induces a cellular stress response

Li, M.; Mei, Y.; Liu, J.; Fan, K.; Zhang, X.; Xu, J.; Li, Y.; Mi, Y.

10.1101/751297 — pharmacology and toxicology — Posted on 2019-09-09

2614 Temporal tuning of repetition suppression across the visual cortex

Fritsche, M.; Lawrence, S. J. D.; de Lange, F. P.

10.1101/763078 — neuroscience — Posted on 2019-09-09

2615 Canine sense of quantity: evidence for numerical ratio-dependent activation in parietotemporal cortex

Aulet, L. S.; Chiu, V. C.; Prichard, A.; Spivak, M.; Lourenco, S. F.; Berns, G. S.

10.1101/763300 — neuroscience — Posted on 2019-09-09

2616 The Vibrio cholerae MARTX toxin simultaneously induces actin collapse while silencing the inflammatory response to cytoskeletal damage

Woida, P. J.; Satchell, K. J. F.

10.1101/526616 — microbiology — Posted on 2019-09-09

2617 The gammaherpesvirus 68 viral cyclin facilitates reactivation by promoting latent gene expression.

Niemeyer, B. F.; Gibson, J. E.; Berger, J. N.; Oko, L. M.; Medina, E.; Clambey, E. T.; van Dyk, L. F.

10.1101/761700 — microbiology — Posted on 2019-09-09

2618 An efficient CRISPR-based strategy to insert small and large fragments of DNA using short homology arms

Kanca, O.; Zirin, J.; Garcia-Marques, J.; Knight, S. M.; Yang-Zhou, D.; Amador, G.; Chung, H.; Zuo, Z.; Ma, L.; He, Y.; Lin, W.-W.; Fang, Y.; Ge, M.; Shinya, Y.; Schulze, K. L.; Hu, Y.; Spradling, A. C.; Mohr, S. E.; Perrimon, N.; Bellen, H. J.

10.1101/763789 — genomics — Posted on 2019-09-09

2619 Absence of a faster-X effect in beetles (Tribolium, Coleoptera)

Whittle, C. A.; Kulkarni, A.; Extavour, C. G.

10.1101/754903 — evolutionary biology — Posted on 2019-09-09

2620 Multiple incursion pathways for Helicoverpa armigera in Brazil show its genetic diversity spreading in a connected world

Arnemann, J. A.; Roxburgh, S. H.; Walsh, T.; Guedes, J. V.; Gordon, K.; Smagghe, G.; Tay, W. T.

10.1101/762229 — evolutionary biology — Posted on 2019-09-09

2621 Changes in life history and population size can explain relative neutral diversity levels on X and autosomes in extant human populations

Amster, G.; Murphy, D. A.; Milligan, W. M.; Sella, G.

10.1101/763524 — evolutionary biology — Posted on 2019-09-09

2622 Evolutionary route of resistant genes in Staphylococcus aureus

John, J.; George, S.; Nori, S. R. C.; Nelson-Sathi, S.

10.1101/762054 — evolutionary biology — Posted on 2019-09-09

2623 ADNP promotes neural differentiation by modulating Wnt/β-catenin signaling

Sun, Y.; Sun, X.; Cao, Y.; Peng, X.; Zhou, Y.

10.1101/761064 — developmental biology — Posted on 2019-09-09

2624 Notch signaling regulates Akap12 expression and primary cilia length during renal tubule morphogenesis.

Mukherjee, M.; Ratnayake, I.; Janga, M.; Fogarty, E.; Scheidt, S.; deRiso, J.; Grassmeyer, J.; Chandrasekar, I.; Ahrenkiel, P.; Kopan, R.; Surendran, K.

10.1101/760181 — cell biology — Posted on 2019-09-09

2625 Thirty two novel nsSNPs May effect on HEXA protein Leading to Tay-Sachs disease (TSD) Using a Computational Approach

Abdelhameed, T. A.; Osman, M. M.; Abdelrahman, D. N.; Mudawi, A. M.; Khalifa, S. K.; Elnour, O. A.; Idrees, S. M.; Taha, A. A.; Osman, S. A.; Al-Hajj, E. M.; Elhag, M.; Hassan, M. A.

10.1101/762518 — bioinformatics — Posted on 2019-09-09

2626 Heritable Variation in Learning Phenotypes Drive Collective Cognition

Cook, C. N.; Lemanski, N. J.; Mosqueiro, T.; Ozturk, C.; Gadau, J.; Pinter-Wollman, N.; Smith, B. H.

10.1101/761676 — animal behavior and cognition — Posted on 2019-09-09

2627 PK-DB: PharmacoKinetics DataBase for Individualized and Stratified Computational Modeling

Grzegorzewski, J.; Brandhorst, J.; Eleftheriadou, D.; Green, K.; König, M.

10.1101/760884 — bioinformatics — Posted on 2019-09-09

2628 Transcriptome responses to reduced dopamine in the Substantia Nigra Pars Compacta reveals a potential protective role for dopamine.

Koltun, M.; Cichewicz, K.; Gibbs, J. T.; Darvas, M.; Hirsh, J.

10.1101/468330 — neuroscience — Posted on 2019-09-09

2629 The genetics of the mood disorder spectrum: genome-wide association analyses of over 185,000 cases and 439,000 controls

Coleman, J.; Gaspar, H. A.; Bryois, J.; Bipolar Disorder Working Group of the Psychiatric Genomics Consortium, ; Major Depressive Disorder Working Group of the Psychiatric Genomics Consortium, ; Breen, G.

10.1101/383331 — genomics — Posted on 2019-09-09

2630 Quantifying the tradeoff between sequencing depth and cell number in single-cell RNA-seq

Svensson, V.; da Veiga Beltrame, E.; Pachter, L.

10.1101/762773 — genomics — Posted on 2019-09-09

2631 Phytochrome light receptors control metabolic flux, and their action during seedling development sets the trajectory for biomass production

Krahmer, J.; Abbas, A.; Mengin, V.; Ishihara, H.; Moraes, T. A.; Krohn, N.; Annunziata, M.-G.; Feil, R.; Alseekh, S.; Obata, T.; Fernie, A. R.; Stitt, M.; Halliday, K. J.

10.1101/762666 — plant biology — Posted on 2019-09-09

2632 Assessing the utility of MAGNETO to control neuronal excitability in the somatosensory cortex

Kole, K.; Zhang, Y.; Jansen, E. J. R.; Brouns, T.; Bijlsma, A.; Calcini, N.; Yan, X.; da Silva Lantyer, A.; Celikel, T.

10.1101/762559 — neuroscience — Posted on 2019-09-09

2633 Non-parallel transcriptional divergence during parallel adaptation

Fischer, E. K.; Song, Y.; Hughes, K. A.; Zhou, W.; Hoke, K. L.

10.1101/761619 — evolutionary biology — Posted on 2019-09-09

2634 Structure-based drug repositioning explains ibrutinib as VEGFR2 inhibitor

Adasme, M. F.; Parisi, D.; Van Belle, K.; Salentin, S.; Haupt, V. J.; Jennings, G. S.; Heinrich, J.-C.; Herman, J.; Sprangers, B.; Louat, T.; Moreau, Y.; Schroeder, M.

10.1101/678896 — bioinformatics — Posted on 2019-09-09

2635 Fog signaling has diverse roles in epithelial morphogenesis in insects

Benton, M. A.; Frey, N.; Nunes da Fonseca, R.; von Levetzow, C.; Stappert, D.; Hakeemi, M. S.; Conrads, K. H.; Pechmann, M.; Panfilio, K. A.; Lynch, J. A.; Roth, S.

10.1101/578526 — developmental biology — Posted on 2019-09-09

2636 Centrosome and ciliary abnormalities in fetal akinesia deformation sequence human fibroblasts

Juhlen, R.; Breckpot, J.; Fahrenkrog, B.

10.1101/756734 — cell biology — Posted on 2019-09-09

2637 Delineating the rules for structural adaptation of membrane-associated proteins to evolutionary changes in membrane lipidome

Makarova, M.; Peter, M.; Balogh, G.; Glatz, A.; MacRae, J. I.; Mora, N. L.; Booth, P.; Makeyev, E.; Vigh, L.; Oliferenko, S.

10.1101/762146 — cell biology — Posted on 2019-09-09

2638 Behavioral and neuronal underpinnings of safety in numbers

Ferreira, C. H.; Moita, M. A.

10.1101/629311 — neuroscience — Posted on 2019-09-09

2639 Autistic traits influence the strategic diversity of information sampling: insights from two-stage decision models

Lu, H.; Yi, L.; Zhang, H.

10.1101/582783 — neuroscience — Posted on 2019-09-09

2640 Reconstruction of networks with direct and indirect genetic effects

Kruijer, W.; Behrouzi, P.; Bustos Korts, D.; Rodriguez-Alvarez, M. X.; Mahmoudi, S. M.; Yandell, B.; Wit, E.; Van Eeuwijk, F.

10.1101/646208 — genetics — Posted on 2019-09-09

2641 Simultaneous tracking of Pseudomonas aeruginosa motility in liquid and at the solid-liquid interface reveals differential roles for the flagellar stators

Hook, A. L.; Flewellen, J. L.; Dubern, J.-F.; Carabelli, A.; Zaid, I. M.; Berry, R. M.; Wildman, R.; Russell, N.; Williams, P.; Alexander, M. R.

10.1101/541615 — biophysics — Posted on 2019-09-09

2642 Goal congruency dominates reward value in accounting for behavioral and neural correlates of value-based decision-making

Froemer, R.; Dean Wolf, C. K.; Shenhav, A.

10.1101/600148 — neuroscience — Posted on 2019-09-09

2643 Obtaining tertiary protein structures by the ab-initio interpretation of small angle X-ray scattering data

Prior, C.; Davies, O.; Bruce, D.; Pohl, E.

10.1101/572057 — molecular biology — Posted on 2019-09-09

2644 An exploration of ambigrammatic sequences in narnaviruses

DeRisi, J. L.; Huber, G.; Kistler, A.; Retallack, H.; Wilkinson, M.; Yllanes, D.

10.1101/761890 — genomics — Posted on 2019-09-09

2645 CloneRetriever: retrieval of rare clones from heterogeneous cell populations

Feldman, D.; Tsai, F.; Garrity, A. J.; ORourke, R.; Brenan, L.; Ho, P.; Gonzalez, E.; Konermann, S.; Johannessen, C. M.; Beroukhim, R.; Bandopadhayay, P.; Blainey, P.

10.1101/762708 — genomics — Posted on 2019-09-09

2646 How pirate phage interferes with helper phage: Comparison of the two distinct strategies

Mitarai, N.

10.1101/576587 — ecology — Posted on 2019-09-09

2647 The landscape of viral associations in human cancers

Zapatka, M.; Borozan, I.; Brewer, D. S.; Iskar, M.; Grundhoff, A.; Alawi, M.; Desai, N.; Sueltmann, H.; Moch, H.; PCAWG Pathogens Working Group, ; ICGC/TCGA Pan-Cancer Analysis of Whole Genomes Network, ; Cooper, C. S.; Eils, R.; Ferretti, V.; Lichter, P.

10.1101/465757 — cancer biology — Posted on 2019-09-09

2648 Structural basis for the allosteric regulation of the SbtA bicarbonate transporter by the PII-like protein, SbtB, from Cyanobium sp. PCC7001

Kaczmarski, J. A.; Hong, N.; Mukherjee, B.; Wey, L. T.; Rourke, L.; Forster, B.; Peat, T. S.; Price, G. D.; Jackson, C. J.

10.1101/762807 — biochemistry — Posted on 2019-09-09

2649 Human footprint differentially impacts genetic connectivity of four wide-ranging mammals in a fragmented landscape

Thatte, P.; Chandramouli, A.; Tyagi, A.; Patel, K.; Baro, P.; Chhattani, H.; Ramakrishnan, U.

10.1101/717777 — ecology — Posted on 2019-09-09

2650 Development of adaptive motor control for tactile navigation

Azarfar, A.; Celikel, T.

10.1101/762443 — neuroscience — Posted on 2019-09-08

2651 Serotonergic development of active sensing

Azarfar, A.; Zhang, Y.; Alishbayli, A.; Schubert, D.; Homberg, J. R.; Celikel, T.

10.1101/762534 — neuroscience — Posted on 2019-09-08

2652 Evidence accumulation during perceptual decision-making is sensitive to the dynamics of attentional selection

Rangelov, D.; Mattingley, J. B.

10.1101/537910 — neuroscience — Posted on 2019-09-08

2653 Two distinct trophectoderm lineage stem cells from human pluripotent stem cells

Mischler, A.; Karakis, V.; Mahinthakumar, J.; Carberry, C.; San Miguel, A.; Rager, J.; Fry, R.; Rao, B. M.

10.1101/762542 — developmental biology — Posted on 2019-09-08

2654 The distribution of neuronal primary cilia immunoreactive to melanin-concentrating hormone receptor 1 (MCHR1) in the murine prosencephalon

Diniz, G. B.; Battagello, D. S.; Bono, B. S. M.; Ferreira, J. G. P.; Klein, M. O.; Motta-Teixeira, L. C.; Duarte, J. C. G.; Presse, F.; Nahon, J.-L.; Adamantidis, A.; Chee, M. J.; Sita, L. V.; Bittencourt, J. C.

10.1101/755967 — neuroscience — Posted on 2019-09-08

2655 Novel model of distal myopathy caused by the myosin rod mutation R1500P disrupts acto-myosin binding

Wilson, G. C. K.; Buvoli, A.; Buvoli, M.; Woulfe, K. C.; Walker, L. A.; Leinwand, L. A.

10.1101/760272 — molecular biology — Posted on 2019-09-08

2656 MAP Kinase inhibition reshapes tumor microenvironment of mouse pancreatic cancer by depleting anti-inflammatory macrophages

Delfino, P.; Neander, C.; Filippini, D.; D'Agosto, S.; Vicentini, C.; Fiorini, E.; Lupo, F.; Fiorini, C.; Rusev, B.; Temgue Tane, G.; De Sanctis, F.; Simbolo, M.; Ugel, S.; Bronte, V.; Fassan, M.; Lawlor, R. T.; Boschi, F.; Barbi, S.; Scarpa, A.; Cheung, P. F.; Siveke, J. T.; Corbo, V.

10.1101/759779 — cancer biology — Posted on 2019-09-08

2657 Distributions of hypothalamic neuron populations co-expressing tyrosine hydroxylase and the vesicular GABA transporter in the mouse

Negishi, K.; Payant, M. A.; Schumacker, K. S.; Wittmann, G.; Butler, R. M.; Lechan, R. M.; Steinbusch, H. W. M.; Khan, A. M.; Chee, M. J.

10.1101/762328 — neuroscience — Posted on 2019-09-08

2658 Development of adaptive motor control for tactile navigation

Azarfar, A.; Celikel, T.

10.1101/762443 — neuroscience — Posted on 2019-09-08

2659 The \"Locus of Learning\" Problem: Effects of Stimulus and Task Structure on Temporal Perceptual Learning

Xu, R.; Church, R. M.; Sasaki, Y.; Watanabe, T.

10.1101/762633 — neuroscience — Posted on 2019-09-08

2660 Bidirectional crosstalk between HIF and Glucocorticoid signalling in zebrafish larvae

Marchi, D.; Santhakumar, K.; Markham, E.; Li, N.; Storbeck, K.-H.; Krone, N.; Cunliffe, V. T.; van Eeden, F. J. M.

10.1101/748566 — physiology — Posted on 2019-09-08

2661 Neuromodulation of pelvic nerve during early phase of spinal cord injury in rats using implantable prototype devices - a preliminary study.

Peh, W. Y. X.; Alam, M.; Ahmed, R. U.; Lee, S.; Ong, L. J.; Lu, S.; Mogan, R.; Gammad, G. G. L.; Ng, K. A.; Rusly, A.; Nag, S.; Zheng, Y.-P.; Yen, S.-C.

10.1101/759449 — neuroscience — Posted on 2019-09-08

2662 Serotonergic development of active sensing

Azarfar, A.; Zhang, Y.; Alishbayli, A.; Schubert, D.; Homberg, J. R.; Celikel, T.

10.1101/762534 — neuroscience — Posted on 2019-09-08

2663 Dynamic changes in rhythmic and arrhythmic neural signatures in the subthalamic nucleus induced by anaesthesia and intubation

Huang, Y.; Hu, K.; Green, A.; Ma, X.; Gillies, M.; Wang, S.; Fitzgerald, J.; Pan, Y.; Martin, S.; Huang, P.; Zhan, S.; Li, D.; Tan, H.; Aziz, T.; Sun, B.

10.1101/762260 — neuroscience — Posted on 2019-09-08

2664 Arfgef1 haploinsufficiency in mice alters neuronal endosome composition and decreases membrane surface postsynaptic GABAA receptors

Teoh, J. J.; Subramanian, N.; Pero, M. E.; Bartolini, F.; Amador, A.; Kanber, A.; Williams, D.; Petri, S.; Yang, M.; Allen, A. S.; Beal, J.; Haut, S. R.; Frankel, W.

10.1101/743625 — genetics — Posted on 2019-09-08

2665 Autophagy-dependent filopodial kinetics restrict synaptic partner choice during Drosophila brain wiring

Kiral, F. R.; Linneweber, G. A.; Georgiev, S. V.; Hassan, B. A.; von Kleist, M.; Hiesinger, P. R.

10.1101/762179 — neuroscience — Posted on 2019-09-08

2666 The theory and practice of measuring broad-range recombination rate from marker selected pools

Wei, K. H.- C.; Mantha, A.; Bachtrog, D.

10.1101/762575 — genetics — Posted on 2019-09-08

2667 Sporadic ERK pulses drive non-genetic resistance in drug-adapted BRAFV600E melanoma cells

Gerosa, L.; Chidley, C.; Froehlich, F.; Sanchez, G.; Lim, S. K.; Muhlich, J.; Chen, J.-Y.; Baker, G. J.; Schapiro, D.; Shi, T.; Yi, L.; Nicora, C. D.; Claas, A.; Lauffenburger, D. A.; Qian, W.-J.; Wiley, H. S.; Sorger, P. K.

10.1101/762294 — cancer biology — Posted on 2019-09-08

2668 Expressed barcodes enable clonal characterization of chemotherapeutic responses in chronic lymphocytic leukemia

Al'Khafaji, A.; Gutierrez, C.; Brenner, E.; Durrett, R.; Johnson, K. E.; Zhang, W.; Li, S.; Livak, K. J.; Neuberg, D.; Brock, A.; Wu, C. J.

10.1101/761981 — cancer biology — Posted on 2019-09-08

2669 Dissecting the chitinolytic activity of mammalian chitinases

Barad, B. A.; Liu, L.; Diaz, R. E.; Basilio, R.; Van Dyken, S. J.; Locksley, R. M.; Fraser, J. S.

10.1101/762336 — biochemistry — Posted on 2019-09-08

2670 Regulatory non-coding small RNAs are diverse and abundant in an extremophilic microbial community

Gelsinger, D.; Uritskiy, G. V.; Reddy, R.; Munn, A.; Farney, K.; DiRuggiero, J.

10.1101/761684 — microbiology — Posted on 2019-09-08

2671 MicroRNA-210 Knockout Alters Dendritic Density and Behavioural Flexibility

Watts, M.; Williams, G.; Lu, J.; Nithianantharajah, J.; Claudianos, C.

10.1101/762450 — neuroscience — Posted on 2019-09-08

2672 Within and Between-person Correlates of the Temporal Dynamics of Resting EEG Microstates

Zanesco, A. P.; King, B. G.; Skwara, A. C.; Saron, C. D.

10.1101/758078 — neuroscience — Posted on 2019-09-08

2673 Transmission analysis of a large TB outbreak in London: mathematical modelling study using genomic data

Xu, Y.; Topliffe, H.; Stimson, J.; Stagg, H.; Abubakar, I.; Colijn, C.

10.1101/761411 — genomics — Posted on 2019-09-08

2674 Genetic diversity and haplotypic structure of a Saudi population sample using Investigator Argus X-12 amplification kit

Messaoudi, S. A.; Ramesh, S.; Alsaleh, A.; Albajjah, M.; Alsnan, N.

10.1101/760819 — genetics — Posted on 2019-09-08

2675 Urban birdsongs: higher minimum song frequency of an urban colonist persists in a common garden experiment

Reichard, D. G.; Atwell, J. W.; Pandit, M. M.; Cardoso, G. C.; Price, T. D.; Ketterson, E. D.

10.1101/761734 — evolutionary biology — Posted on 2019-09-08

2676 Asynchronous mixing of kidney progenitor cells potentiates nephrogenesis in organoids

Gupta, A. K.; Sarkar, P.; Pan, X.; Carroll, T. J.; Oxburgh, L.

10.1101/761916 — developmental biology — Posted on 2019-09-08

2677 Extensive Intratumor Proteogenomic Heterogeneity Revealed by Multiregion Sampling in a High-Grade Serous Ovarian Tumor Specimen

Hunt, A. L.; Bateman, N. W.; Hood, B. L.; Conrads, K. A.; Zhou, M.; Litzi, T. J.; Oliver, J.; Mitchell, D.; Gist, G.; Blanton, B.; Odunsi, K.; Sood, A. K.; Casablanca, Y.; Shriver, C. D.; Darcy, K. M.; Rao, U. N.; Maxwell, G. L.; Conrads, T. P.

10.1101/761155 — cancer biology — Posted on 2019-09-08

2678 Viral expression of a SERCA2a-activating PLB mutant improves calcium cycling and synchronicity in dilated cardiomyopathic hiPSC-CMs

Stroik, D. R.; Ceholski, D. K.; Mleczko, J.; Thanel, P. F.; Bidwell, P. A.; Autry, J. M.; Cornea, R. L.; Thomas, D. D.

10.1101/699975 — biophysics — Posted on 2019-09-08

2679 Acetylcholine modulates cerebellar granule cell spiking by regulating the balance of synaptic excitation and inhibition

Fore, T. R.; Taylor, B. N.; Brunel, N.; Hull, C.

10.1101/760223 — neuroscience — Posted on 2019-09-08

2680 The consequences of mixed-species malaria parasite co-infections in mice and mosquitoes for disease severity, parasite fitness, and transmission success

Tang, J.; Templeton, T. J.; Cao, J.; Culleton, R.

10.1101/761791 — microbiology — Posted on 2019-09-08

2681 Emergence and evolution of the ERM proteins and merlin in metazoans

Shabardina, V.; Kashima, Y.; Suzuki, Y.; Makalowski, W.

10.1101/631770 — evolutionary biology — Posted on 2019-09-08

2682 Stress generation, relaxation and size control in confined tumor growth

Yan, H.; Ramirez-Guerrero, D.; Lowengrub, J.; Wu, M.

10.1101/761817 — biophysics — Posted on 2019-09-08

2683 Mental geometry of 3D size and shape perception

Zaidi, Q.; Maruya, A.

10.1101/761650 — neuroscience — Posted on 2019-09-08

2684 Cigarette Smoke Exposure Impairs β-Cell Function Through Activation of Oxidative Stress and Ceramide Accumulation

Tong, X.; Chaudhry, Z.; Lee, C.-C.; Bone, R. N.; Kanojia, S.; Maddatu, J.; Sohn, P.; Robertson, M.; Petrache, I.; Evans-Molina, C.; Kono, T.

10.1101/761007 — molecular biology — Posted on 2019-09-08

2685 Degradation of recalcitrant polyurethane and xenobiotic additives by a selected landfill microbial community and its biodegradative potential revealed by proximity ligation-based metagenomic analysis

Gaytán, I.; Sánchez-Reyes, A.; Burelo, M.; Vargas-Suárez, M.; Liachko, I.; Press, M.; Sullivan, S.; Cruz-Gómez, J.; Loza-Tavera, H.

10.1101/760637 — genomics — Posted on 2019-09-08

2686 Antibiotic Resistance Increases Evolvability and Maximizes Opportunities Across Fitness Landscapes

Spagnolo, F.; Dykhuizen, D. E.

10.1101/750729 — evolutionary biology — Posted on 2019-09-08

2687 Octanol-water partition coefficient measurements for the SAMPL6 Blind Prediction Challenge

Isık, M.; Levorse, D.; Mobley, D. L.; Rhodes, T.; Chodera, J. D.

10.1101/757393 — biophysics — Posted on 2019-09-08

2688 Anatomic set of mechanical models for the organ of Corti

Berger, J.; Rubinstein, J.

10.1101/760835 — systems biology — Posted on 2019-09-08

2689 Motion displaces population receptive fields in the direction opposite to motion

Schneider, M.; Marquardt, I.; Sengupta, S.; De Martino, F.; Goebel, R. W.

10.1101/759183 — neuroscience — Posted on 2019-09-08

2690 Rapid detection of identity-by-descent tracts for mega-scale datasets

Shemirani, R.; Belbin, G. M.; Avery, C. L.; Kenny, E. E.; Gignoux, C. R.; Ambite, J. L.

10.1101/749507 — genomics — Posted on 2019-09-08

2691 Intracranial pressure elevation alters CSF clearance pathways

Vinje, V.; Eklund, A.; Mardal, K.-A.; Rognes, M. E.; Stoverud, K.-H.

10.1101/760645 — bioengineering — Posted on 2019-09-08

2692 Design principles of a minimal auxin response system

Kato, H.; Mutte, S.; Suzuki, H.; Crespo, I.; Das, S.; Radoeva, T.; Fontana, M.; Yoshitake, Y.; Hainiwa, E.; van den Berg, W.; Lindhoud, S.; Hohlbein, J.; Borst, J. W.; Boer, R.; Nishihama, R.; Kohchi, T.; Weijers, D.

10.1101/760876 — plant biology — Posted on 2019-09-08

2693 A simple method to determine the elimination half-life of drugs displaying noncumulative toxicity

Nagarajan, D.; Venkatesh, P.; Thakur, C.; Datey, A.; Chandra, N.; Chakravortty, D.

10.1101/761585 — pharmacology and toxicology — Posted on 2019-09-08

2694 Improving Social Interactive Learning through Dual Brain Stimulation

Pan, Y.; Novembre, G.; Song, B.; Zhu, Y.; Hu, Y.

10.1101/762377 — neuroscience — Posted on 2019-09-08

2695 Interrogation of Enhancer Function by Enhanced CRISPR Epigenetic Editing

Li, K.; Liu, Y.; Cao, H.; Zhang, Y.; Gu, Z.; Liu, X.; Yu, A.; Kaphle, P.; Dickerson, K.; Ni, M.; Xu, J.

10.1101/761247 — molecular biology — Posted on 2019-09-08

2696 Surveying the sweetpotato rhizosphere, endophyte, and surrounding soil microbiomes at two North Carolina farms reveals underpinnings of sweetpotato microbiome community assembly

Pepe-Ranney, C.; Keyser, C.; Trimble, J. K.; Bissinger, B.

10.1101/758359 — microbiology — Posted on 2019-09-08

2697 De novo variants in population constrained fetal brain enhancers and intellectual disability

De Vas, M. G.; Garstang, M. G.; Joshi, S. S.; Khan, T.; Atla, G.; Parry, D.; Moore, D.; Cebola, I.; Zhang, S.; Cui, W.; Lampe, A. K.; Lam, W. W.; FitzPatrick, D. R.; Ferrer, J.; Madapura, P. M.; Atanur, S. S.

10.1101/621029 — genomics — Posted on 2019-09-08

2698 Density dependence on multiple spatial scales maintains spatial variation in both abundance and traits

van Benthem, K. J.; Wittmann, M. J.

10.1101/759415 — evolutionary biology — Posted on 2019-09-08

2699 Temperature-Energy-space Sampling Molecular Dynamics: Deterministic, Iteration-free, and Single-replica Method utilizing Continuous Temperature System

Fukuda, I.; Moritsugu, K.

10.1101/760918 — biophysics — Posted on 2019-09-08

2700 Dissection of the early pollen-stigma interactions by live-cell imaging

Rozier, F.; Riglet, L.; Kodera, C.; Bayle, V.; Durand, E.; Gaude, T.; Fobis-Loisy, I.

10.1101/760579 — plant biology — Posted on 2019-09-08

2701 Constructing and Forgetting Temporal Context in the Human Cerebral Cortex

Chien, H.-Y. S.; Honey, C. J.

10.1101/761593 — neuroscience — Posted on 2019-09-08

2702 Subjective value, not a grid-like code, describes neural activity in ventromedial prefrontal cortex during value-based decision-making

Lee, S.; Yu, L. Q.; Lerman, C.; Kable, J. W.

10.1101/759951 — neuroscience — Posted on 2019-09-08

2703 Endogenous esterases of Clostridium thermocellum are identified and disrupted for enhanced isobutyl acetate production from cellulose

Seo, H.; Nicely, P. N.; Trinh, C. T.

10.1101/761833 — microbiology — Posted on 2019-09-08

2704 Enhancement of drought tolerance on guinea grass by dry alginate macrobeads as inoculant of Bacillus strains

Mendoza, J.

10.1101/761056 — microbiology — Posted on 2019-09-08

2705 Enhancing natural killer cell function with gp41-targeting bispecific antibodies to combat HIV infection

Ramadoss, N. S.; Zhao, N. Q.; Richardson, B. A.; Grant, P. M.; Kim, P. S.; Blish, C. A.

10.1101/760280 — immunology — Posted on 2019-09-08

2706 The co-stimulation of anti-CD28 and IL-2 enhances the sensitivity of ELISPOT assays for detection of neoantigen-specific T cells in PBMC

Lee, L. J.; Li, B.; zhang, x.; tang, y.; Zhu, L.

10.1101/760355 — immunology — Posted on 2019-09-08

2707 Selfing Maintains Flower Colour Polymorphism In L. arvensis Despite High Inbreeding Depression

Jimenez-Lopez, F. J.; Ortiz, P. L.; Talavera, M.; Arista, M.

10.1101/761122 — evolutionary biology — Posted on 2019-09-08

2708 Maternal care of heterozygous Dopamine Receptor D4 knockout mice: Differential susceptibility to early-life rearing conditions

Knop, J.; van IJzendoorn, M. H.; Bakermans-Kranenburg, M.; Joels, M.; van der Veen, R.

10.1101/761049 — developmental biology — Posted on 2019-09-08

2709 Dysregulated cell signalling and reduced satellite cell potential in ageing muscle

Patel, K.; Simbi, B.; Ritvos, O.; Vaiyapuri, S.; Dhoot, G. K.

10.1101/761023 — cell biology — Posted on 2019-09-08

2710 Benchmarking analysis of deleterious SNP prediction tools on CYP2D6 enzyme

Ferreira, K. C.; Fialho, L. F.; Franco, O. L.; Alencar, S. A.; Porto, W. F.

10.1101/760298 — bioinformatics — Posted on 2019-09-08

2711 Identification of orthotropic material parameters for acute, necrotic, fibrotic and remodelling myocardial infarcts in the rat

Sirry, M. S.; Dubuis, L.; Davies, N. H.; Liao, J.; Franz, T.

10.1101/754754 — bioengineering — Posted on 2019-09-08

2712 Rapid and independent evolution of ancestral and novel defenses in a genus of toxic plants (Erysimum, Brassicaceae)

Züst, T.; Strickler, S. R.; Powell, A. F.; Mabry, M. E.; An, H.; Mirzaei, M.; York, T.; Holland, C. K.; Kumar, P.; Erb, M.; Petschenka, G.; Gomez, J.-M.; Perfectti, F.; Mueller, C.; Pires, C.; Mueller, L. A.; Jander, G.

10.1101/761569 — plant biology — Posted on 2019-09-08

2713 Approximating complex musculoskeletal biomechanics using multidimensional autogenerating polynomials

Sobinov, A.; Boots, M. T.; Gritsenko, V.; Fisher, L. E.; Gaunt, R. A.; Yakovenko, S.

10.1101/759878 — physiology — Posted on 2019-09-08

2714 Fully Automated Brain Tumor Segmentation and Survival Prediction of Gliomas using Deep Learning and MRI

Bangalore Yogananda, C. G.; Nalawade, S.; Murugesan, G. K.; Wagner, B.; Pinho, M.; Fei, B.; Madhuranthakam, A.; Maldjian, J. A.

10.1101/760157 — neuroscience — Posted on 2019-09-08

2715 Studying functional brain networks from dry electrode EEG set during music and resting states in neurodevelopment disorder

Sareen, E.; Gupta, A.; Verma, R.; Achary, G. K.; Varkey, B.

10.1101/759738 — neuroscience — Posted on 2019-09-08

2716 Defining the adult hippocampal neural stem cell secretome: in vivo versus in vitro transcriptomic differences and their correlation to secreted protein levels

Denninger, J. K.; Chen, X.; Turkoglu, A. M.; Sarchet, P.; Volk, A. R.; Yan, P.; Kirby, E. D.

10.1101/760215 — neuroscience — Posted on 2019-09-08

2717 A unified picture of neuronal avalanches arises from the understanding of sampling effects

Pinheiro Neto, J.; Spitzner, F. P.; Priesemann, V.

10.1101/759613 — neuroscience — Posted on 2019-09-08

2718 Robust perisomatic GABAergic self-innervation inhibits basket cells in the human and mouse supragranular neocortex

Szegedi, V.; Paizs, M.; Baka, J.; Barzo, P.; Molnar, G.; Tamas, G.; Lamsa, K.

10.1101/760983 — neuroscience — Posted on 2019-09-08

2719 Polygenic Risk Scores for Cardio-renal-metabolic Diseases in the Penn Medicine Biobank

Kember, R.; Verma, A.; Verma, S. S.; Lucas, A.; Judy, R.; Chen, J.; Damrauer, S.; Rader, D. J.; Ritchie, M. D.

10.1101/759381 — genomics — Posted on 2019-09-08

2720 Maternal exposure to a mitochondrial toxicant results in life-long alterations in DNA methylation and gene expression in the offspring

Lozoya, O.; Xu, F.; Grenet, D.; Wang, T.; Grimm, S.; Godfrey, V.; Waidyanatha, S.; Woychik, R.; Santos, J.

10.1101/758474 — genomics — Posted on 2019-09-08

2721 Hybridizing salamanders experience accelerated diversification

Patton, A.; Margres, M. J.; Epstein, B.; Eastman, J. E.; Harmon, L. J.; Storfer, A.

10.1101/760264 — evolutionary biology — Posted on 2019-09-08

2722 Corona exchange dynamics on carbon nanotubes by multiplexed fluorescence monitoring

Pinals, R. L.; Yang, D.; Lui, A.; Cao, W.; Landry, M. P.

10.1101/761296 — bioengineering — Posted on 2019-09-08

2723 Unsupervised Clusterless Decoding using a Switching Poisson Hidden Markov Model

Ackermann, E. R.; Kemere, C. T.; Cunningham, J. P.

10.1101/760470 — neuroscience — Posted on 2019-09-08

2724 N-acetyl-L-leucine treatment attenuates neuronal cell death and suppresses neuroinflammation after traumatic brain injury in mice

Sarkar, C.; Hegdekar, N.; Lipinski, M. M.

10.1101/759894 — neuroscience — Posted on 2019-09-08

2725 Homeostatic recovery of embryonic spinal activity initiated by compensatory changes in resting membrane potential.

Gonzalez-Islas, C. E.; Garcia-Bereguiain, M. A.; Wenner, P. A.

10.1101/761767 — neuroscience — Posted on 2019-09-08

2726 Alpha Activity Reflects the Effort to Compensate an Individual Bias in Human Perception

Grabot, L.; Kayser, C.

10.1101/759159 — neuroscience — Posted on 2019-09-08

2727 An analysis of intrinsic base substitution patterns in diverse species reveals connections to cancer and metabolism

Chan, K.; Doherty, K. N.; Alasmar, S.

10.1101/758540 — genomics — Posted on 2019-09-08

2728 A two-stage approach to identifying and validating modifiable factors for the prevention of depression

Choi, K. W.; Stein, M. B.; Nishimi, K.; Ge, T.; Coleman, J. R.; Chen, C.-Y.; Ratanatharathorn, A.; Zheutlin, A. B.; Dunn, E. C.; 23andMe Research Team, ; Major Depressive Disorder Working Group of the Psychiatric Genomics Consortium, ; Breen, G.; Koenen, K. C.; Smoller, J. W.

10.1101/759753 — genetics — Posted on 2019-09-08

2729 Non-parallel transcriptional divergence during parallel adaptation

Fischer, E. K.; Song, Y.; Hughes, K. A.; Zhou, W.-X.; Hoke, K. L.

10.1101/761619 — evolutionary biology — Posted on 2019-09-08

2730 CD99 regulates cancer cell transendothelial migration and endothelial cell function via CDC42 and actin remodelling

Mannion, A. J.; Odell, A. F.; Taylor, A.; Jones, P. F.; Cook, G. P.

10.1101/760934 — cell biology — Posted on 2019-09-08

2731 A viral fusogen hijacks the actin cytoskeleton to drive cell-cell fusion

Chan, K. M. C.; Son, S.; Schmid, E. M.; Fletcher, D. A.

10.1101/761502 — cell biology — Posted on 2019-09-08

2732 JAM-A functions as a female microglial tumor suppressor in glioblastoma

Turaga, S. M.; Silver, D. J.; Bayik, D.; Paouri, E.; Borjini, N.; Peng, S.; Naik, U.; Keri, R. A.; Connor, J. R.; Barnholtz-Sloan, J.; Rubin, J. B.; Berens, M.; Davalos, D.; Lathia, J.

10.1101/761445 — cancer biology — Posted on 2019-09-08

2733 ColocAI: artificial intelligence approach to quantify co-localization between mass spectrometry images

Ovchinnikova, K.; Rakhlin, A.; Stuart, L.; Nikolenko, S.; Alexandrov, T.

10.1101/758425 — bioinformatics — Posted on 2019-09-08

2734 Transcriptomic learning for digital pathology

Schmauch, B.; Romagnoni, A.; Pronier, E.; Saillard, C.; Maille, P.; Calderaro, J.; Sefta, M.; Toldo, S.; Clozel, T.; Moarii, M.; Courtiol, P.; Wainrib, G.

10.1101/760173 — bioinformatics — Posted on 2019-09-08

2735 Effects of feeding treatment on growth rates and consequences on performance of primiparous Holstein dairy heifers

Le Cozler, Y.; Jurquet, J.; Bedere, N.

10.1101/760082 — zoology — Posted on 2019-09-08

2736 A Computational Framework to Study the Primary Lifecycle Metabolism of Arabidopsis thaliana

Schroeder, W. L.; Saha, R.

10.1101/761189 — systems biology — Posted on 2019-09-08

2737 Widespread Receptor Driven Modulation in Peripheral Olfactory Coding

Xu, L.; Li, W.; Voleti, V.; Hillman, E. M. C.; Firestein, S.

10.1101/760330 — neuroscience — Posted on 2019-09-08

2738 Over eight hundred cannabis strains characterized by the relationship between their psychoactive effects, perceptual profiles, and chemical compositions

de la Fuente, L. A.; Zamberlan, F.; Sanchez Ferran, A.; Carrillo, F.; Tagliazucchi, E.; Pallavicini, C.

10.1101/759696 — neuroscience — Posted on 2019-09-08

2739 Experience-dependent reorganization drives the development of a binocularly unified representation of orientation in ferret visual cortex

Whitney, D. E.; Chang, J. T.; Fitzpatrick, D.

10.1101/761395 — neuroscience — Posted on 2019-09-08

2740 Dopamine in the songbird auditory cortex shapes auditory preference

Barr, H. J.; Wall, E. M.; Woolley, S. C.

10.1101/761783 — neuroscience — Posted on 2019-09-08

2741 Longitudinal Automatic Segmentation of Hippocampal Subfields (LASHiS) using Multi-Contrast MRI

Shaw, T. B.; Bollmann, S.; York, A.; Ziaei, M.; Barth, M.

10.1101/759217 — neuroscience — Posted on 2019-09-08

2742 Locally acting transcription factors are required for p53-dependent cis-regulatory element activity

Catizone, A. N.; Karsli Uzunbas, G.; Celadova, P.; Kuang, S.; Bose, D.; Sammons, M. A.

10.1101/761387 — molecular biology — Posted on 2019-09-08

2743 Admistration of Exogenous Melatonin Improves the Diurnal Rhythms of Gut Microbiota in High Fat Diet-Fed Mice

Yin, J.; Han, H.; Li, Y.; Liu, G.; Wu, X.; Huang, X.; Fang, R.; Baba, K.; Bin, P.; Zhu, G.; Ren, W.; Tan, B.; Tosini, G.; He, X.; Li, T.; Yin, Y.

10.1101/760421 — microbiology — Posted on 2019-09-08

2744 IRG1 controls immunometabolic host response and restricts intracellular Mycobacterium tuberculosis infection

Hoffmann, E.; Machelart, A.; Belhaouane, I.; Deboosere, N.; Pauwels, A.-M.; Saint-Andre, J.-P.; Song, O.-R.; Jouny, S.; Poncet, A.; Marion, S.; Beyaert, R.; Majlessi, L.; Brodin, P.

10.1101/761551 — immunology — Posted on 2019-09-08

2745 Sexual-dimorphism in human immune system aging

Marquez, E. J.; Chung, C.-h.; Marches, R.; Rossi, R. J.; Nehar-Belaid, D.; Mellert, D. J.; Kuchel, G. A.; Banchereau, J.; Ucar, D.

10.1101/755702 — immunology — Posted on 2019-09-08

2746 DAF-16 and SMK-1 contribute to innate immunity during adulthood in Caenorhabditis elegans

McHugh, D. R.; Koumis, E.; Schlaubitz-Garcia, M.; Bennani, S.; Regan, P.; Patel, P.; Youngman, M. J.

10.1101/761312 — immunology — Posted on 2019-09-08

2747 Test-statistic correlation and data-row correlation

Di, Y.; Jiang, D.; Zhuo, B.

10.1101/759027 — genetics — Posted on 2019-09-08

2748 Evolution of generalists by phenotypic plasticity

Fraebel, D. T.; Gowda, K.; Mani, M.; Kuehn, S.

10.1101/761288 — evolutionary biology — Posted on 2019-09-08

2749 Genetic Portrait of North-West Indian Population based on X Chromosome Alu Insertion Markers

Singh, G.; Srinivas, Y.

10.1101/761692 — evolutionary biology — Posted on 2019-09-08

2750 Metabolic insight into bacterial community assembly across ecosystem boundaries

Wisnoski, N. I.; Muscarella, M. E.; Larsen, M. L.; Peralta, A. L.; Lennon, J. T.

10.1101/758615 — ecology — Posted on 2019-09-08

2751 A missing link in mutualistic networks: symbiotic fungi in plant-animal interactions

Chaverri, P.; Chaverri, G.

10.1101/761270 — ecology — Posted on 2019-09-08

2752 Evidence for positive priming of leaf litter decomposition by contact with eutrophic pond sediments

Fortino, K.; Hoak, J.; Waters, M. N.

10.1101/749101 — ecology — Posted on 2019-09-08

2753 METABOLIC: A scalable high-throughput metabolic and biogeochemical functional trait profiler based on microbial genomes

Zhou, Z.; Tran, P.; Liu, Y.; Kieft, K.; Anantharaman, K.

10.1101/761643 — bioinformatics — Posted on 2019-09-08

2754 SLR-superscaffolder: a de novo scaffolding tool for synthetic long reads using a top-to-bottom scheme

Deng, L.; Guo, L.; Xu, M.; Wang, W.; Gu, S.; Zhao, X.; Chen, F.; Wang, O.; Xu, X.; Fan, G.; Liu, X.

10.1101/762385 — bioinformatics — Posted on 2019-09-08

2755 Deep learning models predict regulatory variants in pancreatic islets and refine type 2 diabetes association signals

Wesolowska-Andersen, A.; Zhuo Yu, G.; Nylander, V.; Abaitua, F.; Thurner, M.; Torres, J. M.; Mahajan, A.; Gloyn, A. L.; McCarthy, M. I.

10.1101/760868 — bioinformatics — Posted on 2019-09-08

2756 Direct anabolic three carbon metabolism to a six carbon metabolite occurs in human heart and in vivo across mouse tissues

Doan, M. T.; Neinast, M. D.; Bedi, K.; Jiang, H.; Trefely, S.; Xu, P.; Singh, J. P.; Rame, E.; Marguiles, K.; Arany, Z.; Snyder, N. W.

10.1101/758706 — biochemistry — Posted on 2019-09-08

2757 Social Media and citizen science provide valuable data for behavioural ecology research: Are cuttlefish using pursuit deterrent signals during hunting?

Gordon, D.; Pugh, P.; Cooke, G. M.

10.1101/760926 — animal behavior and cognition — Posted on 2019-09-08

2758 Circadian protein regulation in the green lineage II. The clock gene circuit controls a phospho-dawn in Arabidopsis thaliana.

Krahmer, J.; Hindle, M.; Perby, L. K.; Nielsen, T. H.; VanOoijen, G.; Halliday, K. J.; Le Bihan, T.; Millar, A. J.

10.1101/760892 — systems biology — Posted on 2019-09-08

2759 α-synuclein in the retina leads to degeneration of dopamine amacrine cells impairing vision

Marrocco, E.; Esposito, F.; Tarallo, V.; Carboncino, A.; Alvino, F. G.; De Falco, S.; Franco, B.; De Risi, M.; Indrieri, A.; Surace, E. M.; De Leonibus, E.

10.1101/760603 — neuroscience — Posted on 2019-09-08

2760 Sex differences in cortisol and memory following acute social stress in amnestic mild cognitive impairment

Murphy, K. J.; Sheppard, P. A. S.; Troyer, A. K.; Hampson, E.; Galea, L. A.

10.1101/757484 — neuroscience — Posted on 2019-09-08

2761 BrainSpace: a toolbox for the analysis of macroscale gradients in neuroimaging and connectomics datasets

Vos de Wael, R.; Benkarim, O.; Paquola, C.; Lariviere, S.; Royer, J.; Tavakol, S.; Xu, T.; Hong, S.-J.; Valk, S. L.; Misic, B.; Milham, M.; Margulies, D. S.; Smallwood, J.; Bernhardt, B.

10.1101/761460 — neuroscience — Posted on 2019-09-08

2762 Trophic Selective Pressures Organize the Composition of Endolithic Microbial Communities from Global Deserts

Qu, E. B.; Omelon, C.; Oren, A.; Meslier, V.; Cowan, D. A.; Maggs-Koelling, G. L.; DiRuggiero, J.

10.1101/761262 — microbiology — Posted on 2019-09-08

2763 In vitro comparison of the internal ribosomal entry site activity from rodent hepacivirus and pegivirus

Sims, S.

10.1101/761379 — microbiology — Posted on 2019-09-08

2764 Bacterial Hyperswarming as a Protective Response to Intestinal Stress

Chen, W.; De, A.; Li, H.; Lukin, D. J.; Szymczak, W.; Sun, K.; Kelly, L.; Wright, J. R.; Lamendella, R.; Ghosh, S.; Kearns, D. B.; He, Z.; Jobin, C.; Luo, X.; Byju, A.; Chatterjee, S.; Yeoh, B. S.; Vijay-Kumar, M.; Tang, J. X.; Mani, S.

10.1101/759886 — microbiology — Posted on 2019-09-08

2765 Targeted Sequencing Workflows for Comprehensive Drug Resistance Profiling of Mycobacterium tuberculosis cultures using Illumina MiSeq and Nanopore MinION: Comparison of analytical and diagnostic performance, turnaround time and cost

Tafess, K.; Ng, T. T. L.; Lao, H. Y.; Leung, K. S.-S.; Tam, K. K.-G.; Rajwani, R.; Tam, S. T. Y.; Ho, L. P. K.; Chu, C. M. K.; Gonzalez, D.; Sayada, C.; Ma, O. C.-K.; Nega, B. H.; Ameni, G.; Yam, W.-C.; Siu, G. K. H.

10.1101/760462 — microbiology — Posted on 2019-09-08

2766 Oropouche virus detection in saliva and urine

do Nascimento, V. A.; Santos, J. H. A.; Monteiro, D. C.; Pessoa, K. P.; Cardoso, A. J.; de Souza, V. C.; Abdalla, L. F.; Naveca, F. G.

10.1101/758839 — microbiology — Posted on 2019-09-08

2767 A multi-view model for relative and absolute microbial abundances

Williamson, B. D.; Hughes, J. P.; Willis, A. D.

10.1101/761486 — genomics — Posted on 2019-09-08

2768 Measuring genome sizes using read-depth, k-mers, and flow cytometry: methodological comparisons in beetles (Coleoptera)

Pflug, J.; Johnston, J. S.; Holmes, V. R.; Burrus, C.; Maddison, D. R.

10.1101/761304 — genomics — Posted on 2019-09-08

2769 Collective behaviour is not robust to disturbance, yet parent and offspring colonies resemble each other in social spiders

Fisher, D. N.; Lichtenstein, J. L. L.; Costa-Pereira, R.; Yeager, J.; Pruitt, J. N.

10.1101/761338 — evolutionary biology — Posted on 2019-09-08

2770 Mother knows best: maternal egg-clutch size predicts larval group size in pine sawflies (genus Neodiprion)

Terbot, J. W.; Linnen, C. R.

10.1101/761528 — evolutionary biology — Posted on 2019-09-08

2771 Understanding the effect of temperature on Bluetongue disease risk in livestock

El Moustaid, F.; Thronton, Z.; Slamani, H.; Ryan, S. J.; Johnson, L. R.

10.1101/759860 — ecology — Posted on 2019-09-08

2772 Enhancing Myocardial Repair with CardioClusters

Monsanto, M.; Wang, B.; Ehrenberg, Z.; Echeagaray, O.; White, K.; Alvarez, R.; Fisher, K.; Sengphanith, S.; Muliono, A.; Gude, N.; Sussman, M.

10.1101/759845 — cell biology — Posted on 2019-09-08

2773 Deamidation in Moxetumomab Pasudotox Leading to Conformational Change and Immunotoxin Activity Loss

Wang, J.; Lu, X.; De Mel, N.; Parupudi, A.; Lin, S.; Wang, X.; Delmar, J.; Pandey, M.

10.1101/761635 — biophysics — Posted on 2019-09-08

2774 PeSA: A Software Tool for Peptide Specificity Analysis

Topcu, E.; Biggar, K. K.

10.1101/760140 — bioinformatics — Posted on 2019-09-08

2775 KDML: a machine-learning framework for inference of multi-scale gene functions from genetic perturbation screens

Sailem, H.; Rittscher, J.; Pelkmans, L.

10.1101/761106 — systems biology — Posted on 2019-09-08

2776 Genomewide association study reveals transient loci underlying the genetic architecture of biomass accumulation under cold stress in Sorghum.

Shakoor, N.; Agnew, E.; Ziegler, G.; Lee, S.; Lizarraga, C.; Fahlgren, N.; Baxter, I.; Mockler, T. C.

10.1101/760025 — plant biology — Posted on 2019-09-08

2777 The IDA cell separation pathway connects developmental and defense responses

Olsson, V.; Smakowska-Luzan, E.; Breiden, M.; Marhavy, P.; Schneeweiss, R.; Belkhadir, Y.; Simon, R.; Butenko, M. A.

10.1101/761346 — plant biology — Posted on 2019-09-08

2778 Divergent morphological changes within the orbitofrontal cortex in individuals with congenital olfactory sensory loss

Peter, M. G.; Martensson, G.; Postma, E. M.; Engström Nordin, L.; Westman, E.; Boesveldt, S.; Lundström, J. N.

10.1101/760793 — neuroscience — Posted on 2019-09-08

2779 Episodic memory retrieval is supported by rapid replay of episode content

Wimmer, G. E.; Liu, Y.; Vehar, N.; Behrens, T. E.; Dolan, R. J.

10.1101/758185 — neuroscience — Posted on 2019-09-08

2780 Distinct patterns of thought mediate the link between brain functional connectome and psychological well-being

Vatansever, D.; Karapanagiotidis, T.; Margulies, D. S.; Jefferies, E.; Smallwood, J.

10.1101/762344 — neuroscience — Posted on 2019-09-08

2781 Rest functional brain maturation during the first year of life

Auge, P.; Lemaitre, H.; Saitovitch, A.; Tacchella, J.-M.; Fillon, L.; Calmon, R.; Levy, R.; Grevent, D.; Brunel, F.; Boddaert, N.; Zilbovicius, M.

10.1101/760843 — neuroscience — Posted on 2019-09-08

2782 Acetylcholine modulates cerebellar granule cell spiking by regulating the balance of synaptic excitation and inhibition

Fore, T. R.; Taylor, B. N.; Brunel, N.; Hull, C.

10.1101/760223 — neuroscience — Posted on 2019-09-08

2783 Reward evokes visual perceptual learning following reinforcement rules

Wang, Z.; Kim, D.; Pedroncelli, G.; Sasaki, Y.; Watanabe, T.

10.1101/760017 — neuroscience — Posted on 2019-09-08

2784 Epigenetic memory independent of symmetric histone inheritance

Saxton, D. S.; Rine, J.

10.1101/760801 — molecular biology — Posted on 2019-09-08

2785 SRPK3 regulates alternative pre-mRNA splicing required for B lymphocyte development and humoral responsiveness

Arends, T.; Taliaferro, J. M.; Peterman, E.; Knapp, J. R.; O'Connor, B. P.; Torres, R. M.; Hagman, J. R.

10.1101/759829 — immunology — Posted on 2019-09-08

2786 Sex differences in autoimmunity could be associated with altered regulatory T cell phenotype and lipoprotein metabolism

Robinson, G. A.; Waddington, K.; Adriani, M.; Radziszewska, A.; Peckham, H.; Isenberg, D. A.; Ioannou, Y.; Ciurtin, C.; Pineda-Torra, I.; Jury, E.

10.1101/760975 — immunology — Posted on 2019-09-08

2787 A nonhomologous end-joining mutant for Neurospora sitophila research

Rhoades, N. A.; Webber, E. K.; Hammond, T. M.

10.1101/761130 — genetics — Posted on 2019-09-08

2788 Mean growth rate when rare is not a reliable metric for persistence of species

Pande, J.; Fung, T.; Chisholm, R.; Shnerb, N.

10.1101/762401 — ecology — Posted on 2019-09-08

2789 Mechanical and molecular parameters that influence the tendon differentiation potential of C3H10T1/2 cells in 2D- and 3D-culture systems

GAUT, L.; BONNIN, M.-A.; Cacciapuoti, I.; ORPEL, M.; Mericskay, M.; Duprez, D.

10.1101/760751 — developmental biology — Posted on 2019-09-08

2790 Visualizing cellular heterogeneity by quantifying the dynamics of MAPK activity in live mammalian cells with synthetic fluorescent biosensors

Ma, M.; Bordignon, P.; Dotto, G.-P.; Pelet, S.

10.1101/760652 — cell biology — Posted on 2019-09-08

2791 A novel xenograft model of human HCC in immunocompetent mouse

Bi, Y.; Shi, J.; Li, S.; Wang, Q.; Wang, Q.; Weng, X.; Yang, F.; Duan, Z.; Yang, Y.; Zhang, X.; Zhang, Y.; Shu, Z.; Chen, Y.; Hong, F.

10.1101/762351 — cancer biology — Posted on 2019-09-08

2792 Pre- and post-sequencing recommendations for functional annotation of human fecal metagenomes

Treiber, M. L.; Taft, D. H.; Korf, I.; Mills, D. A.; Lemay, D. G.

10.1101/760207 — bioinformatics — Posted on 2019-09-08

2793 Variational Autoencoder Modular Bayesian Networks (VAMBN) for Simulation of Heterogeneous Clinical Study Data

Gootjes-Dreesbach, L.; Sood, M.; Sahay, A.; Hofmann-Apitius, M.; Fröhlich, H.

10.1101/760744 — bioinformatics — Posted on 2019-09-08

2794 IL-10 Promotes Endothelial Progenitor Cell Driven Wound Neovascularization and Enhances Healing via STAT3.

Balaji, S.; steen, e.; wang, x.; Vangapandu, H. V.; Templeman, N.; Blum, A. J.; Moles, C. M.; Li, H.; narmoneva, d. a.; Crombleholme, T. m.; butte, m. j.; bollyky, p. l.; keswani, s. g.

10.1101/760165 — physiology — Posted on 2019-09-08

2795 Mechanisms of distributed working memory in a large-scale model of the macaque neocortex

Mejias, J. F.; Wang, X.-J.

10.1101/760231 — neuroscience — Posted on 2019-09-08

2796 A Non-negative Measure Of Feature-specific Information Transfer Between Neural Signals

Bim, J.; De Feo, V.; Chicharro, D.; Hanganu-Opatz, I. L.; Brovelli, A.; Panzeri, S.

10.1101/758128 — neuroscience — Posted on 2019-09-08

2797 Platelet proteolytic machinery assessment in Alzheimer’s Diseases

Muriu, R. G.; Sage, J. M.; Agbas, A.

10.1101/760116 — neuroscience — Posted on 2019-09-08

2798 Graph combinatorics based group-level network inference for brain connectome analysis

Chen, S.; Wu, Q.; Hong, L. E.

10.1101/758490 — neuroscience — Posted on 2019-09-08

2799 On the relative ease of speciation with periodic gene flow

Linck, E.; Battey, C. J.

10.1101/758664 — evolutionary biology — Posted on 2019-09-08

2800 Neural hierarchical models of ecological populations

Joseph, M. B.

10.1101/759944 — ecology — Posted on 2019-09-08

2801 Causes and consequences of facultative sea crossing in a soaring migrant

Becciu, P.; Rotics, S.; Horvitz, N.; Kaatz, M.; Fiedler, W.; Zurell, D.; Flack, A.; Jeltsch, F.; Wikelski, M.; Nathan, R.; Sapir, N.

10.1101/758102 — ecology — Posted on 2019-09-08

2802 How to choose sets of ancestry informative markers: A supervised feature selection approach

Pfaffelhuber, P.; Grundner-Culemann, F.; Lipphardt, V.; Baumdicker, F.

10.1101/759464 — bioinformatics — Posted on 2019-09-08

2803 \"Bolder\" together - response to human social cues in free-ranging dogs

Bhattacharjee, D.; Sau, S.; Bhadra, A.

10.1101/760108 — animal behavior and cognition — Posted on 2019-09-08

2804 Predictive masking is associated with a system-wide reconfiguration of neural populations in the human visual cortex

Carvalho, J.; Renken, R. J.; Cornelissen, F. W.

10.1101/758094 — neuroscience — Posted on 2019-09-08

2805 Stability of excitatory structural connectivity predicts the probability of CA1 pyramidal neurons to become engram neurons

Castello-Waldow, T. P.; Weston, G.; Chenani, A.; Loewenstein, Y.; Chen, A.; Attardo, A.

10.1101/759225 — neuroscience — Posted on 2019-09-08

2806 Specific nanoscale synaptic reshuffling and control of short-term plasticity following NMDAR- and P2XR-dependent Long-Term Depression

Compans, B.; Martineau, M.; Klaassen, R. V.; Bartol, T. M.; Butler, C.; Kechkar, A.; Perrais, D.; Sejnowski, T. J.; Sibarita, J.-B.; Smit, G. B.; Choquet, D.; Hosy, E.

10.1101/759191 — neuroscience — Posted on 2019-09-08

2807 Trading water for carbon: Sustained photosynthesis at the cost of increased water loss during high temperatures in a temperate forest

Griebel, A.; Bennett, L. T.; Metzen, D.; Pendall, E.; Lane, P. N.; Arndt, S. K.

10.1101/760249 — ecology — Posted on 2019-09-08

2808 Keeping up with the genomes: efficient learning of our increasing knowledge of the tree of life

Zhao, Z.; Cristian, A.; Rosen, G. L.

10.1101/758755 — bioinformatics — Posted on 2019-09-08

2809 Regulation of mRNA translation by a photoriboswitch

Rotstan, K. A.; Abdesayed, M. M.; Passalacqua, L. F. M.; Chizzolini, F.; Sudarshan, K.; Chamberlin, A. R.; Misek, J.; Luptak, A.

10.1101/761775 — synthetic biology — Posted on 2019-09-08

2810 Design and assembly of DNA molecules using multi-objective optimisation

Gaeta, A.; Zulkower, V.; Stracquadanio, G.

10.1101/761320 — synthetic biology — Posted on 2019-09-08

2811 Mapping the S1 and S1 subsites of cysteine proteases with new dipeptidyl nitrile inhibitors as trypanocidal agents

Cianni, L.; Lemke, C.; Gilberg, E.; Feldmann, C.; Rosini, F.; Rocho, F. d. R.; Ribeiro, J. F. R.; Tezuka, D. Y.; Lopes, C. D.; de Albuquerque, S.; Bajorath, J.; Leitao, A.; Laufer, S.; Gütschow, M.; Montanari, C. A.

10.1101/760736 — biochemistry — Posted on 2019-09-08

2812 The sources and transmission routes of microbial populations throughout a meat processing facility

Zwirzitz, B.; Wetzels, S. U.; Dixon, E. D.; Stessl, B.; Zaiser, A.; Rabanser, I.; Thalguter, S.; Pinior, B.; Roch, F.-F.; Strachan, C. R.; Zhangellini, J.; Dzieciol, M.; Wagner, M.; Mann, E.

10.1101/758730 — microbiology — Posted on 2019-09-08

2813 Cerebellar climbing fibers encode expected reward size

Larry, N.; Yarkoni, M.; Lixenberg, A.; Joshua, M.

10.1101/533653 — neuroscience — Posted on 2019-09-08

2814 Superlets: time-frequency super-resolution using wavelet sets

Moca, V. V.; Nagy-Dabacan, A.; Barzan, H.; Muresan, R. C.

10.1101/583732 — neuroscience — Posted on 2019-09-08

2815 Evolution of the growth plate into a spatially separated structure allows bone growth on land

Xie, M.; Goldin, P.; Herdina, A. N.; Estefa, J.; Medvedeva, E.; Li, L.; Newton, P.; Kotova, S.; Shavkuta, B.; Saxena, A.; Shumate, L.; Metscher, B.; Groschmidt, K.; Nishimori, S.; Akovantseva, A.; Arregui, I. L.; Tafforeau, P.; Fried, K.; Carlstrom, M.; Simon, A.; Gasser, C.; Kronenberg, H.; Bastepe, M.; Cooper, K.; Timashev, P.; Sanchez, S.; Adameyko, I.; Eriksson, A.; Chagin, A. S.

10.1101/571612 — evolutionary biology — Posted on 2019-09-08

2816 Hormones and the Human Alpha Female

Sumra, M. K.

10.1101/697086 — scientific communication and education — Posted on 2019-09-07

2817 Movement and space-use responses of a large herbivore to experimental alteration of resource availability

Ranc, N.; Moorcroft, P. R.; Hansen, K. W.; Ossi, F.; Sforna, T.; Brugnoli, A.; Ferraro, E.; Cagnacci, F.

10.1101/757757 — ecology — Posted on 2019-09-07

2818 A data-based guide to the North American ecology faculty job market

Fox, J.

10.1101/751867 — scientific communication and education — Posted on 2019-09-07

2819 Sex differences in interrelationships between arterial stiffness, carotid intima-media thickness, white matter hyperintensities, depression and cognition: A UK Biobank study

Tsang, R. S. M.; Gallacher, J. E. J.; Bauermeister, S.

10.1101/755280 — neuroscience — Posted on 2019-09-07

2820 Characterization of the vaginal DNA virome in health and dysbiosis: an opening study in patients with non-female factor infertility

Jakobsen, R. R.; Haahr, T.; Humaidan, P. S. H. A.; Jensen, J. S.; Kot, W.; Castro-Mejia, J. L.; Deng, L.; Leser, T. D.; Nielsen, D. S.

10.1101/755710 — microbiology — Posted on 2019-09-07

2821 Immunoinformatics Prediction of Epitope Based Peptide Vaccine Against Schistosoma Mansoni Fructose Bisphosphate Aldolase Protein

Elhag, M.; Mohamed Alaagib, R.; Musa Haroun, E.; Mohamed Ahmed, N.; Abd Albagi, S. O.; Hassan, M. A. S.

10.1101/755959 — bioinformatics — Posted on 2019-09-07

2822 Revisiting Feature Selection with Data Complexity for Biomedicine

Dong, T. N.; Winkler, L.; Khosla, M.

10.1101/754630 — bioinformatics — Posted on 2019-09-07

2823 Reduced interhemispheric and increased intrahemispheric connectivity in schizophrenia brain networks

Laton, J. S.; Van Schependom, J.; Decoster, J.; Moons, T.; De Hert, M.; Nagels, G.; De Vos, M.

10.1101/755173 — neuroscience — Posted on 2019-09-07

2824 Single cell ATAC-seq in human pancreatic islets and deep learning upscaling of rare cells reveals cell-specific type 2 diabetes regulatory signatures

Rai, V.; Quang, D. X.; Erdos, M. R.; Cusanovich, D. A.; Daza, R. M.; Narisu, N.; Zou, L. S.; Didion, J. P.; Guan, Y.; Shendure, J.; Parker, S. C. J.; Collins, F. S.

10.1101/749283 — genomics — Posted on 2019-09-07

2825 Immunoinformatics Prediction of Epitope Based Peptide Vaccine Against Mycobacterium Tuberculosis PPE65 family Protein

Elhag, M.; Sati, A. O. M.; Saadaldin, M. M.; Hassan, M. A. S.

10.1101/755983 — bioinformatics — Posted on 2019-09-07

2826 Deep Learning-Based Point-Scanning Super-Resolution Imaging

Fang, L.; Monroe, F.; Novak, S. W.; Kirk, L.; Schiavon, C. R.; Yu, S. B.; Zhang, T.; Wu, M.; Kastner, K.; Kubota, Y.; Zhang, Z.; Pekkurnaz, G.; Mendenhall, J.; Harris, K.; Howard, J.; Manor, U.

10.1101/740548 — bioinformatics — Posted on 2019-09-07

2827 Improved metagenomic analysis with Kraken 2

Wood, D. E.; Lu, J.; Langmead, B.

10.1101/762302 — bioinformatics — Posted on 2019-09-07

2828 Genome-wide association analyses of multiple traits in Duroc pigs using low-coverage whole-genome sequencing strategy

Yang, R.; Guo, X.; Zhu, D.; Bian, C.; Zhao, Y.; Tan, C.; Wu, Z.; Wang, Y.; Hu, X.; Li, N.

10.1101/754671 — genetics — Posted on 2019-09-07

2829 Molecular responses to freshwater limitation in the mangrove tree Avicennia germinans (Acanthaceae)

Vargas Cruz, M.; Maruyama Mori, G.; Oh, D.-H.; Dassanayake, M.; Imaculada Zucchi, M.; Silva Oliveira, R.; de Souza, A. P.

10.1101/731760 — evolutionary biology — Posted on 2019-09-07

2830 Microbial Biosynthesis of Lactate Esters

Lee, J.; Trinh, C. T.

10.1101/498576 — synthetic biology — Posted on 2019-09-07

2831 DYNLRB1 is Essential for Dynein Mediated Transport and Neuronal Survival

Terenzio, M.; Di Pizio, A.; Rishal, I.; Marvaldi, L.; Di Matteo, P.; Kawaguchi, R.; Coppola, G.; Schiavo, G.; Fisher, E. M. C.; Fainzilber, M.

10.1101/727016 — neuroscience — Posted on 2019-09-07

2832 Locally Fixed Alleles: A method to localize gene drive to island populations

Sudweeks, J.; Hollingsworth, B.; Blondel, D. V.; Campbell, K. J.; Dhole, S.; Eisemann, J. D.; Edwards, O.; Godwin, J.; Howald, G. R.; Oh, K.; Piaggio, A. J.; Prowse, T. A. A.; Ross, J. V.; Saah, J. R.; Shiels, A. B.; Thomas, P.; Threadgill, D. W.; Vella, M. R.; Gould, F.; Lloyd, A.

10.1101/509364 — evolutionary biology — Posted on 2019-09-07

2833 Normal levels of cellular sumoylation are largely dispensable for growth but facilitate heat tolerance in yeast

Moallem, M.; Akhter, A.; Babu, J.; Burke, G. L.; Khan, F.; Bergey, B. G.; McNeil, J. B.; Rosonina, E.

10.1101/761759 — molecular biology — Posted on 2019-09-07

2834 immuneSIM: tunable multi-feature simulation of B- and T-cell receptor repertoires for immunoinformatics benchmarking

Weber, C. R.; Akbar, R.; Yermanos, A.; Pavlovic, M.; Snapkov, I.; Sandve, G. K.; Reddy, S. T.; Greiff, V.

10.1101/759795 — bioinformatics — Posted on 2019-09-07

2835 Evolutionary and biochemical analyses reveal conservation of the Brassicaceae telomerase ribonucleoprotein complex

Dew-Budd, K.; Cheung, J.; Nelson-Dittrich, A.; Palos, K.; Forsythe, E. S.; Nelson, A. D. L.; Beilstein, M. A.

10.1101/760785 — genetics — Posted on 2019-09-06

2836 AIRE is induced in oral squamous cell carcinoma and promotes cancer gene expression.

Sakamoto, K.; Nguyen, C. T. K.; Sawangarun, W.; Mandasari, M.; Morita, K.-i.; Kayamori, K.; Yamaguchi, A.

10.1101/760959 — cancer biology — Posted on 2019-09-06

2837 Dental emergency: scoping review

Frichembruder, K.; Mello dos Santos, C.; Neves Hugo, F.

10.1101/760504 — scientific communication and education — Posted on 2019-09-06

2838 Immediate early gene kakusei plays a role in the daily foraging and learning of honey bees

Singh, A. S.; Cappelletti, P.; Feligioni, M.

10.1101/760587 — neuroscience — Posted on 2019-09-06

2839 Effects of Inaccurate Response Function Calibration on Characteristics of the Fiber Orientation Distribution in Diffusion MRI

Guo, F.; Tax, C. M. W.; De Luca, A.; Viergever, M. A.; Heemskerk, A.; Leemans, A.

10.1101/760546 — neuroscience — Posted on 2019-09-06

2840 Specialization to cell-free or cell-associated spread by BAC-cloned HCMV strains not determined by the UL128-131 and RL13 loci

Schultz, E. P.; Lanchy, J.-M.; Day, L. Z.; Yu, Q.; Peterson, C.; Preece, J.; Ryckman, B.

10.1101/760611 — microbiology — Posted on 2019-09-06

2841 A role of the Nse4 kleisin and Nse1/Nse3 KITE subunits in the ATPase cycle of SMC5/6

Vondrova, L.; Adamus, M.; Nociar, M.; Kolesar, P.; Oliver, A.; Palecek, J. J.

10.1101/760678 — genetics — Posted on 2019-09-06

2842 A method of back-calculating the log odds ratio and standard error of the log odds ratio from the reported group-level risk of disease

Hu, D.; Wang, C.; O'Connor, A.

10.1101/760942 — bioengineering — Posted on 2019-09-06

2843 Predicting the impacts of sea level rise in sea turtle nesting habitat on Bioko Island, Equatorial Guinea

Veelenturf, C. A.; Sinclair, E. M.; Paladino, F. V.; Honarvar, S.

10.1101/760538 — ecology — Posted on 2019-09-06

2844 Vegetation and soil seedbank dynamics in Parthenium hysterophorus L. invaded subtropical grassland in Nepal

Rokaya, M. B.; Khatri-Chettri, J.; Ghimire, S. R.; Shrestha, B. B.

10.1101/760561 — ecology — Posted on 2019-09-06

2845 Modelling the epidemiology of residual Plasmodium vivax malaria in a heterogeneous host population: a case study in the Amazon Basin

Corder, R.; Ferreira, M. U.; Gomes, G. M.

10.1101/760660 — bioinformatics — Posted on 2019-09-06

2846 Can scientists fill the science journalism void? Online public engagement with science stories authored by scientists

Barel-Ben David, Y.; Garty, E. S.; Baram-Tsabari, A.

10.1101/760520 — scientific communication and education — Posted on 2019-09-06

2847 Does skin surface temperature variation account for Buruli ulcer lesion distribution?

Sexton-Oates, N. K.; Stewardson, A.; Yerramilli, A.; Johnson, P.

10.1101/760496 — pathology — Posted on 2019-09-06

2848 Bioinformatics analysis of endophytic bacteria related to berberine in the Chinese medicinal plant Coptis teeta Wall.

liu, t.; Zhang, X.-m.; Tian, S.-z.; Chen, L.-g.; Yuan, J.-l.

10.1101/760777 — microbiology — Posted on 2019-09-06

2849 Thickening of the cell wall increases the resistance of S. cerevisiae to commercial formulations of glyphosate

Ravishankar, A.; Pupo, A.; Gallagher, J. E. G.

10.1101/760694 — genetics — Posted on 2019-09-06

2850 Carbendazim-resistance associated β2-tubulin substitutions increase deoxynivalenol biosynthesis by reducing the interaction between β2-tubulin and IDH3 in Fusarium graminearum

Zhou, Z.; Duan, Y.; Zhou, M.

10.1101/760595 — microbiology — Posted on 2019-09-06

2851 In vitro evolution of herpes simplex virus 1 (HSV-1) reveals selection for syncytia and other minor variants in Vero cell culture

Kuny, C. V.; Bowen, C. D.; Renner, D. W.; Johnston, C. M.; Szpara, M. L.

10.1101/760629 — microbiology — Posted on 2019-09-06

2852 Loss of pyrethroid resistance in newly established laboratory colonies of Aedes aegypti

Vera-Maloof, F.; Saavedra-Rodriguez, K.; Penilla-Navarro, R. P.; D. Rodriguez-Ramirez, A.; Dzul, F.; Manrique, P.; Black, W. C.

10.1101/760710 — genetics — Posted on 2019-09-06

2853 Developing a dengue forecast model using Long Short Term Memory neural networks method

Xu, J.; Xu, K.; Li, Z.; Tu, T.; Xu, L.; Liu, Q.

10.1101/760702 — bioinformatics — Posted on 2019-09-06

2854 The PAR2 signal peptide prevents premature receptor cleavage and activation

Liu, B.; Lee, G.; Wu, J.; Deming, J.; Kuei, C.; Harrington, A.; Wang, L.; Towne, J.; Lovenberg, T.; Liu, C.; Sun, S.

10.1101/760769 — biochemistry — Posted on 2019-09-06

2855 Proprioceptive accuracy in immersive virtual reality: A developmental perspective

Valori, I.; McKenna-Plumley, P. E.; Bayramova, R.; Zandonella Callegher, C.; Altoe, G.; Farroni, T.

10.1101/760553 — neuroscience — Posted on 2019-09-06

2856 A limited role for autophagy during arbovirus infection of mosquito cells

Brackney, D. E.; Correa, M. A.

10.1101/760728 — microbiology — Posted on 2019-09-06

2857 Within-Host Diversity and Vertical Transmission of Group B Streptococcus Among Mother-infant Dyads in The Gambia

Foster-Nyarko, E.; Senghore, M.; Kwambana-Adams, B. A.; Alikhan, N.-F.; Ravi, A.; Jawneh, K.; Jah, A.; Jarju, M.; Ceesay, F.; Bojang, S.; Jafali, J.; Worwui, A.; Odutola, A.; Ogundare, E.; Pallen, M. J.; Ota, M.; Antonio, M.

10.1101/760512 — microbiology — Posted on 2019-09-06

2858 Deep Learning-Based Point-Scanning Super-Resolution Imaging

Fang, L.; Monroe, F.; Novak, S. W.; Kirk, L.; Schiavon, C. R.; Yu, S. B.; Zhang, T.; Wu, M.; Kastner, K.; Kubota, Y.; Zhang, Z.; Pekkurnaz, G.; Mendenhall, J.; Harris, K.; Howard, J.; Manor, U.

10.1101/740548 — bioinformatics — Posted on 2019-09-06

2859 Genomic signature of shifts in selection in a sub-alpine ant and its physiological adaptations

Cicconardi, F.; Krapf, P.; D'Annessa, I.; Gamisch, A.; Wagner, H. C.; Nguyen, A. D.; Economo, E. P.; Mikheyev, A. S.; Guenard, B.; Grabherr, R.; Arthofer, W.; di Marino, D.; Steiner, F.; Schlick-Steiner, B. C.

10.1101/696948 — genomics — Posted on 2019-09-06

2860 Automated EEG mega-analysis I: Spectral and amplitude characteristics across studies

Bigdely-Shamlo, N.; Touryan, J.; Ojeda, A.; Kothe, C.; Mullen, T.; Robbins, K.

10.1101/409631 — neuroscience — Posted on 2019-09-06

2861 A multiresolution framework to characterize single-cell state landscapes

Mohammadi, S.; Davila-Velderrain, J.; Kellis, M.

10.1101/746339 — genomics — Posted on 2019-09-06

2862 Low coverage whole genome sequencing enables accurate assessment of common variants and calculation of genome-wide polygenic scores

Homburger, J. R.; Neben, C. L.; Mishne, G.; Zhou, A. Y.; Kathiresan, S.; Khera, A. V.

10.1101/716977 — genomics — Posted on 2019-09-06

2863 SimpactCyan 1.0: An Open-source Simulator for Individual-Based Models in HIV Epidemiology with R and Python Interfaces

Liesenborgs, J.; Hendrickx, D. M.; Kuylen, E.; Niyukuri, D.; Hens, N.; Delva, W.

10.1101/440834 — epidemiology — Posted on 2019-09-06

2864 Cytokinin promotes jasmonic acid accumulation in the control of maize leaf growth.

Uyehara, A. N.; Del Valle-Echevarria, A. R.; Hunter, C. T.; Nelissen, H.; Demuynck, K.; James, C. F.; Jander, G.; Muszynski, M. G.

10.1101/760405 — plant biology — Posted on 2019-09-06

2865 Germline RNA helicases couple RNA binding to P granule assembly at nuclear periphery

Chen, W.; Hu, Y.; Lang, C.; Brown, J. S.; Song, X.; Munro, E.; Bennett, K.; Zhang, D.; Lee, H.-C.

10.1101/760256 — cell biology — Posted on 2019-09-06

2866 Human PUM1 and PUM2 exhibit regulation of divergent mRNA targets in male germ cells

Smialek, M. J.; Ilaslan, E.; Sajek, M.; Swiercz, A.; Janecki, D. M.; Kusz-Zamelczyk, K.; Wozniak, T.; Kotecki, M.; Handschuh, L.; Figlerowicz, M.; Jaruzelska, J.

10.1101/760967 — molecular biology — Posted on 2019-09-06

2867 Genetic Interaction between RLM1 and F-box Motif Encoding gene SAF1 Contributes to Stress Response in Saccharomyces cerevisiae

Sharma, M.; Verma, V.; Bairwa, N. K.

10.1101/757773 — genetics — Posted on 2019-09-06

2868 Learning improves decoding of odor identity with phase-referenced oscillations in the olfactory bulb

Losacco, J.; Ramirez-Gordillo, D.; Gilmer, J.; Restrepo, D.

10.1101/758813 — neuroscience — Posted on 2019-09-06

2869 β-HPV 8E6 Dysregulates the Hippo Signaling Pathway and Induces Aneuploidy

Dacus, D.; McCallister, T. X.; Cotton, C.; Rigiofoirate, E.; Wallace, N. A.

10.1101/760439 — cancer biology — Posted on 2019-09-06

2870 Association between the 4p16 genomic locus and different types of congenital heart disease: results from adult survivors in the UK Biobank

Cordova-Palomera, A.; Priest, J.

10.1101/760371 — genetics — Posted on 2019-09-06

2871 NNT Regulates Mitochondrial Metabolism in NSCLC Through Maintenance of Fe-S Protein Function

Ward, N. P.; Kang, Y. P.; Falzone, A.; Boyle, T. A.; DeNicola, G. M.

10.1101/761577 — cancer biology — Posted on 2019-09-06

2872 immuneSIM: tunable multi-feature simulation of B- and T-cell receptor repertoires for immunoinformatics benchmarking

Weber, C. R.; Akbar, R.; Yermanos, A.; Pavlovic, M.; Snapkov, I.; Sandve, G. K.; Reddy, S. T.; Greiff, V.

10.1101/759795 — bioinformatics — Posted on 2019-09-06

2873 Diapause is not selected as a bet-hedging strategy in insects: a meta-analysis of reaction norm shapes

Joschinski, J.; Bonte, D.

10.1101/752881 — ecology — Posted on 2019-09-06

2874 Integrated Proteogenomic Deep Sequencing and Analytics Accurately Identify Non-Canonical Peptides in Tumor Immunopeptidomes

Chong, C.; Muller, M.; Pak, H.; Harnett, D.; Huber, F.; Grun, D.; Leleu, M.; Auger, A.; Arnaud, M.; Stevenson, B. J.; Michaux, J.; Bilic, I.; Hirsekorn, A.; Calviello, L.; Simo-Riudalbas, L.; Planet, E.; Lubinski, J.; Bryskiewicz, M.; Wiznerowicz, M.; Xenarios, I.; Zhang, L.; Trono, D.; Harari, A.; Ohler, U.; Coukos, G.; Bassani-Sternberg, M.

10.1101/758680 — cancer biology — Posted on 2019-09-06

2875 Odorant receptor inhibition is fundamental to odor encoding

Pfister, P.; Smith, B. C.; Evans, B. J.; Brann, J. H.; Trimmer, C.; Sheikh, M.; Arroyave, R.; Reddy, G.; Jeong, H.-Y.; Raps, D. A.; Peterlin, Z.; Vergassola, M.; Rogers, M. E.

10.1101/760033 — neuroscience — Posted on 2019-09-06

2876 High-throughput isolation and sorting of gut microbes reduce biases of traditional cultivation strategies

Watterson, W. J.; Tanyeri, M.; Watson, A. R.; Cham, C. M.; Shan, Y.; Chang, E. B.; Eren, A. M.; Tay, S.

10.1101/759969 — microbiology — Posted on 2019-09-06

2877 Thirty five novel nsSNPs may affect ADAMTS13 protein leading to Thrombotic thrombocytopenic purpura (TTP) using bioinformatics approach

Abdelhameed, T. A.; Ahmed, A. I.; Mustafa, M. I.; Eltayeb, A. N.; Abdelrhman, F. A.; Ahmed, A. B.; Ahmed, N. B.; Khadir, H. Y.; Mohamed, H. K.; Osman, S. A.; Hassan, M. A.

10.1101/759787 — bioinformatics — Posted on 2019-09-06

2878 An integrated Asian human SNV and indel benchmark combining multiple sequencing methods

Huang, C.; Shao, L.; Qu, S.; Rao, J.; Cheng, T.; Cao, Z.; Liu, S.; Hu, J.; Liang, X.; Shang, L.; Chen, Y.; Liang, Z.; Zhang, J.; Chen, P.; Luo, D.; Zhu, A.; Yu, T.; Zhang, W.; Fan, G.; Chen, F.; Huang, J.

10.1101/759043 — genomics — Posted on 2019-09-06

2879 Miswired enhancer logic drives translocation positive rhabdomyosarcoma

Gryder, B. E.; Wachtel, M.; Chang, K.; Demerdash, O. E.; Aboreden, N. G.; Ewert, W.; Pomella, S.; Mohammed, W.; Rota, R.; Wei, J. S.; Song, Y.; Schaefer, B.; Vakoc, C. R.; Khan, J.

10.1101/757369 — cancer biology — Posted on 2019-09-06

2880 Theory on the looping mediated directional-dependent propulsion of transcription factors along DNA

Murugan, R.

10.1101/418947 — biophysics — Posted on 2019-09-06

2881 Capturing the dynamics of peripersonal space by integrating sound propagation properties and expectancy effects

Hobeika, L.; Taffou, M.; Carpentier, T.; Warusfel, O.; Viaud-Delmon, I.

10.1101/756783 — neuroscience — Posted on 2019-09-06

2882 Toxoplasma gondii requires its plant-like heme biosynthesis pathway for infection.

Bergmann, A.; Floyd, K.; Key, M.; Dameron, C.; Rees, K. C.; Whitehead, D. C.; Hamza, I.; Dou, Z.

10.1101/753863 — microbiology — Posted on 2019-09-06

2883 Immune genes, IL1β and Casp9, show sexual dimorphic methylation patterns in the zebrafish gonads

Caballero-Huertas, M.; Moraleda-Prados, J.; Joly, S.; Ribas, L.

10.1101/753301 — immunology — Posted on 2019-09-06

2884 Negligible-Cost and Weekend-Free Chemically Defined Human iPSC Culture

Kuo, H.-H.; Gao, X.; DeKeyser, J.-M.; Fetterman, K. A.; Pinheiro, E. A.; Weddle, C. J.; Fonoudi, H.; Orman, M. V.; Romero-Tejeda, M.; Jouni, M.; Blancard, M.; Magdy, T.; Epting, C.; George, A. L.; Burridge, P. W.

10.1101/685503 — cell biology — Posted on 2019-09-06

2885 Discovery of biased orientations of human DNA motif sequences affecting enhancer-promoter interactions and transcription of genes

Osato, N.

10.1101/290825 — bioinformatics — Posted on 2019-09-06

2886 Genetics and Pathway Analysis of Normative Cognitive Variation in the Philadelphia Neurodevelopmental Cohort

Pai, S.; Hui, S.; Weber, P.; Whitley, O.; Li, P.; Labrie, V.; Baumbach, J.; Bader, G. D.

10.1101/751933 — genomics — Posted on 2019-09-06

2887 Indirect actuation reduces flight power requirements in Manduca sexta via elastic energy exchange

Gau, J.; Gravish, N.; Sponberg, S.

10.1101/727743 — biophysics — Posted on 2019-09-06

2888 LINbase: A Web service for genome-based identification of microbes as members of crowdsourced taxa

Tian, L.; Huang, C.; Heath, L. S.; Vinatzer, B. A.

10.1101/752212 — bioinformatics — Posted on 2019-09-06

2889 Prognostics for pain in osteoarthritis: Do clinical measures predict pain after total joint replacement?

Barroso, J.; Wakaizumi, K.; Reckziegel, D.; Pinto-Ramos, J.; Schnitzer, T.; Galhardo, V.; Apkarian, V.

10.1101/751503 — neuroscience — Posted on 2019-09-06

2890 Endothelial pannexin 1 channels control inflammation by regulating intracellular calcium

Yang, Y.; Delalio, L. J.; Best, A. K.; Macal, E. H.; Milstein, J. A.; Donnelly, I.; Miller, A. M.; McBride, M.; Shu, X.; Koval, M.; Isakson, B. E.; Johnstone, S. R.

10.1101/750323 — cell biology — Posted on 2019-09-06

2891 Identifying miRNA synergism using multiple-intervention causal inference

Zhang, J.; Pham, V. V. H.; Liu, L.; Xu, T.; Truong, B.; Li, J.; Rao, N.; Le, T. D.

10.1101/652180 — bioinformatics — Posted on 2019-09-06

2892 Single-cell RNA-sequencing reveals profibrotic roles of distinct epithelial and mesenchymal lineages in pulmonary fibrosis

Habermann, A. C.; Gutierrez, A. J.; Bui, L. T.; Yahn, S. L.; Winters, N. I.; Calvi, C. L.; Peter, L. M.; Chung, M.-I.; Taylor, C. J.; Jetter, C.; Raju, L.; Roberson, J.; Ding, G.; Wood, L.; Sucre, J. M.; Richmond, B. W.; Serezani, A. P.; McDonnell, W. J.; Mallal, S. B.; Bacchetta, M. J.; Loyd, J. E.; Shaver, C. M.; Ware, L. B.; Bremner, R.; Walia, R.; Blackwell, T. S.; Banovich, N. E.; Kropski, J. A.

10.1101/753806 — genomics — Posted on 2019-09-06

2893 A comprehensive annotation and differential expression analysis of short and long non-coding RNAs in 16 bat genomes

Mostajo Berrospi, N.; Lataretu, M.; Krautwurst, S.; Mock, F.; Desiro, D.; Lamkiewicz, K.; Collatz, M.; Schoen, A.; Weber, F.; Marz, M.; Hölzer, M.

10.1101/738526 — bioinformatics — Posted on 2019-09-06

2894 Significant control of Zika infection in macaques depends on the elapsing time after dengue exposure

Serrano-Collazo, C.; Perez-Guzman, E. X.; Pantoja, P.; Hassert, M. A.; Rodriguez, I. V.; Giavedoni, L. D.; Hodara, V.; Parodi, L.; Cruz, L. A.; Arana, T.; Martinez, M. I.; White, L. J.; Brien, J. D.; de Silva, A.; Pinto, A. K.; Sariol, C. A.

10.1101/625293 — immunology — Posted on 2019-09-06

2895 1D MinION sequencing for large-scale species discovery: 7000 scuttle flies (Diptera: Phoridae) from one site in Kibale National Park (Uganda) revealed to belong to >650 species

Srivathsan, A.; Hartop, E.; Puniamoorthy, J.; Lee, W. T.; Kutty, S. N.; Kurina, O.; Meier, R.

10.1101/622365 — evolutionary biology — Posted on 2019-09-06

2896 dSreg: A bayesian model to integrate changes in splicing and RNA binding protein activity

Marti-Gomez, C.; Lara-Pezzi, E.; Sanchez-Cabo, F.

10.1101/595751 — bioinformatics — Posted on 2019-09-06

2897 Affiliative social relationships and coccidian oocyst excretion in a cooperatively breeding bird species

Wascher, C. A. F.; Canestrari, D.; Baglione, V.

10.1101/159129 — animal behavior and cognition — Posted on 2019-09-06

2898 Activity in the Fronto-Parietal Multiple-demand Network is Robustly Associated with Individual Differences in Working Memory and Fluid Intelligence

Assem, M.; Mineroff, Z. A.; Blank, I. A.; Ademoglu, A.; Fedorenko, E.

10.1101/110270 — neuroscience — Posted on 2019-09-06

2899 MTH1 inhibitor TH588 induces mitosis-dependent accumulation of genomic 8-oxodG and disturbs mitotic progression

Rudd, S. G.; Gad, H.; Amaral, N.; Hagenkort, A.; Groth, P.; Strom, C. E.; Mortusewicz, O.; Warpman-Berglund, U.; Helleday, T.

10.1101/573931 — cancer biology — Posted on 2019-09-06

2900 Decomposing information into copying versus transformation

Kolchinsky, A.; Corominas-Murtra, B.

10.1101/584771 — biophysics — Posted on 2019-09-06

2901 Controlling and measuring dynamic odorant stimuli in the laboratory

Gorur-Shandilya, S.; Martelli, C.; Demir, M.; Emonet, T.

10.1101/733055 — neuroscience — Posted on 2019-09-06

2902 A NOVEL FULLY AUTOMATED MRI-BASED DEEP LEARNING METHOD FOR CLASSIFICATION OF IDH MUTATION STATUS IN BRAIN GLIOMAS

Bangalore Yogananda, C. G.; Shah, B. R.; Vejdani-Jahromi, M.; Nalawade, S.; Murugesan, G. K.; Yu, F. F.; Pinho, M. C.; Wagner, B. C.; Mickey, B.; Patel, T.; Fei, B.; Madhuranthakam, A. J.; Maldjian, J. A.

10.1101/757385 — neuroscience — Posted on 2019-09-06

2903 Neuroprotective effects of crocin I and II in an ischemia-reperfusion injury model

Lv, B.; Yin, J.; Feng, C.; Li, Y.

10.1101/757971 — neuroscience — Posted on 2019-09-06

2904 Integrity of corpus callosum is essential for the cross-hemispheric propagation of sleep slow waves: a high-density EEG study in split-brain patients

Avvenuti, G.; Handjaras, G.; Betta, M.; Cataldi, J.; Imperatori, L. S.; Lattanzi, S.; Riedner, B. A.; Pietrini, P.; Ricciardi, E.; Tononi, G.; Siclari, F.; Polonara, G.; Fabri, M.; Silvestrini, M.; Bellesi, M.; Bernardi, G.

10.1101/756676 — neuroscience — Posted on 2019-09-06

2905 Duration invariance of the human circadian system response to pulsed light

Spitschan, M.; Joyce, D. S.; Zeitzer, J. M.

10.1101/759134 — neuroscience — Posted on 2019-09-06

2906 Motor output and control input in flapping flight: a compact model of the deforming wing kinematics of manoeuvring hoverflies

Nagesh, I.; Walker, S. M.; Taylor, G. K.

10.1101/759175 — animal behavior and cognition — Posted on 2019-09-06

2907 The role of early acoustic experience in song discrimination

Hudson, E. J.; Creanza, N.; Shizuka, D.

10.1101/756445 — animal behavior and cognition — Posted on 2019-09-06

2908 Plasticity in medaka gonadotropes via cell proliferation and phenotypic conversion

Fontaine, R.; Ager-Wick, E.; Hodne, K.; Weltzien, F.-A.

10.1101/757682 — physiology — Posted on 2019-09-06

2909 Capturing the dynamics of peripersonal space by integrating sound propagation properties and expectancy effects

Hobeika, L.; Taffou, M.; Carpentier, T.; Waruslef, O.; Viaud-Delmon, I.

10.1101/756783 — neuroscience — Posted on 2019-09-06

2910 Independent Activity Subspaces for Working Memory and Motor Preparation in the Lateral Prefrontal Cortex

Tang, C.; Herikstad, R.; Parthasarathy, A.; Libedinsky, C.; Yen, S.-C.

10.1101/756072 — neuroscience — Posted on 2019-09-06

2911 Interaction of pH stress and demography leads to convergent evolution in the protist Tetrahymena thermophila

Moerman, F.; Arquint, A.; Merkli, S.; Wagner, A.; Altermatt, F.; Fronhofer, E. A.

10.1101/758300 — evolutionary biology — Posted on 2019-09-06

2912 Adaptive-Resolution Multi-Orientation Analysis of Complex Filamentous Network Images

Kittisopikul, M.; Vahabikashi, A.; Shimi, T.; Goldman, R. D.; Jaqaman, K.

10.1101/757005 — bioinformatics — Posted on 2019-09-06

2913 Deep learning for brains?: Different linear and nonlinear scaling in UK Biobank brain images vs. machine-learning datasets

Schulz, M.-A.; Yeo, T.; Vogelstein, J.; Mourao-Miranada, J.; Kather, J.; Kording, K.; Richards, B. A.; Bzdok, D.

10.1101/757054 — bioinformatics — Posted on 2019-09-06

2914 Species and sex divergence in vocalizations between hybridizing role-reversed shorebirds, Northern Jacana (Jacana spinosa) and Wattled Jacana (Jacana jacana)

Buck, E.; Monroe, T.; Zwicky, G.; Derryberry, E. P.; Lipshutz, S. E.

10.1101/757336 — animal behavior and cognition — Posted on 2019-09-06

2915 Elevated exposure to prenatal thyroid hormones affects embryonic mortality but has no effects into adulthood

Sarraude, T.; Hsu, B.-Y.; Groothuis, T. G. G.; Ruuskanen, S.

10.1101/757260 — physiology — Posted on 2019-09-06

2916 Causal adaptation to visual input dynamics governs the development of complex cells in V1

Matteucci, G.; Zoccolan, D.

10.1101/756668 — neuroscience — Posted on 2019-09-06

2917 Challenges in assessing voxel-wise single-subject level benefits of MB acceleration

Bhandari, R.; Gazzola, V.; Keysers, C.

10.1101/756361 — neuroscience — Posted on 2019-09-06

2918 Contralateral Delay Activity is not sensitive to cognitive decline in older adults at risk of Mild Cognitive Impairment.

Farina, F. R.; Pragulbickaite, G.; Bennett, M.; Judd, C.; Walsh, K.; Mitchell, S.; O'Connell, R. G.; Whelan, R.

10.1101/753392 — neuroscience — Posted on 2019-09-06

2919 Cortical neuronal activity determines the dynamics of local sleep homeostasis

Thomas, C. W.; Guillaumin, M. C. C.; McKillop, L. E.; Achermann, P.; Vyazovskiy, V. V.

10.1101/756270 — neuroscience — Posted on 2019-09-06

2920 A small family business: synergistic and additive effects of the queen and the brood on worker reproduction in a primitively eusocial bee

Orlova, M.; Starkey, J. A.; Amsalem, E.

10.1101/756692 — animal behavior and cognition — Posted on 2019-09-06

2921 Does skin surface temperature variation account for Buruli ulcer lesion distribution?

Sexton-Oates, N. K.; Stewardson, A.; Yerramilli, A.; Johnson, P.

10.1101/760496 — pathology — Posted on 2019-09-06

2922 The cell division factor ZapB is required for bile resistance in Salmonella enterica

Hernandez, S. B.; Fernandez-Fernandez, R.; Puerta-Fernandez, E.; Urdaneta, V.; Casadesus, J.

10.1101/759068 — microbiology — Posted on 2019-09-06

2923 Comparative genomics unravels mechanisms of genetic adaptation for the catabolism of the phenylurea herbicide linuron in Variovorax

Öztürk, B.; Werner, J.; Meier-Kolthoff, J. P.; Bunk, B.; Spröer, C.; Springael, D.

10.1101/759100 — microbiology — Posted on 2019-09-06

2924 B cell Compartmentalisation in Blood and Cerebrospinal Fluid of HIV- Infected Ugandans with Cryptococcal Meningitis

Okurut, S.; Meya, D. B.; Olobo, J.; Bohjanen, P. R.; Bwanga, F.; Eller, M. A.; Boulware, D.; Huppler Hullsiek, K.; Pratap, H.; Manabe, Y. C.; Palmer, B.; Janoff, E.; Jallow, F.

10.1101/759092 — immunology — Posted on 2019-09-06

2925 The antibiotic bedaquiline activates host macrophage innate immune resistance to bacterial infection

Giraud-Gatineau, A.; Coya, J. M.; Maure, A.; Biton, A.; Thomson, M.; Bernard, E. M.; Gutierrez, M. G.; Larrouy-Maumus, G.; Brosch, R.; Gicquel, B.; Tailleux, L.

10.1101/758318 — immunology — Posted on 2019-09-06

2926 Diauxie and co-utilization are not exclusive during growth in nutritionally complex environments

Perrin, E.; Giovannini, M.; Di Patti, F.; Cardazzo, B.; Carraro, L.; Fagorzi, C.; Ghini, V.; Turano, P.; Fani, R.; Fondi, M.

10.1101/752832 — systems biology — Posted on 2019-09-06

2927 FRA1 modulates cortical microtubule localization of CMU proteins

Ganguly, A.; Zhu, C.; Chen, W.; Dixit, R.

10.1101/760389 — plant biology — Posted on 2019-09-06

2928 Low miRNA abundance disables microRNA pathway in mammalian oocytes

Kataruka, S.; Modrak, M.; Kinterova, V.; Zeitler, D. M.; Malik, R.; Kanka, J.; Meister, G.; Svoboda, P.

10.1101/757153 — molecular biology — Posted on 2019-09-06

2929 Exploration of social spreading reveals behavior is prevalent among Pedobacter and P. fluorescens isolates, and shows variations in induction of phenotype

McCully, L. M.; Graslie, J.; Bitzer, A. S.; Sigurbjörnsdottir, A. M.; Vilhelmsson, O.; Silby, M. W.

10.1101/758656 — microbiology — Posted on 2019-09-06

2930 Pneumococcal carriage requires KDM6B, a histone demethylase, for its unique inflammatory signature

Connor, M. G.; Patey, E.; Rasid, O.; Barrio, L.; Miller, D. P.; Lamont, R. J.; Enninga, J.; Hamon, M. A.

10.1101/757906 — microbiology — Posted on 2019-09-06

2931 High-throughput isolation and sorting of gut microbes reduce biases of traditional cultivation strategies

Watterson, W.; Tanyeri, M.; Watson, A.; Cham, C.; Shan, Y.; Chang, E. B.; Eren, M.; Tay, S.

10.1101/759969 — microbiology — Posted on 2019-09-06

2932 Interdependency of respiratory metabolism and phenazine-associated physiology in Pseudomonas aeruginosa PA14

Jo, J.; Price-Whelan, A.; Cornell, W. C.; Dietrich, L. E. P.

10.1101/760454 — microbiology — Posted on 2019-09-06

2933 Laboratory Analysis of an Outbreak of Candida auris in New York from 2016 to 2018-Impact and Lessons Learned

Zhu, Y. C.; O'Brien, B.; Leach, L.; Clark, A.; Bates, M.; Adams, E.; Ostrowsky, B.; Quinn, M.; Dufort, E.; Southwick, K.; Erazo, R.; Haley, V. B.; Bucher, C.; Chaturvedi, V.; Limberger, R. J.; Blog, D.; Lutterloh, E.; Chaturvedi, S.

10.1101/760090 — microbiology — Posted on 2019-09-06

2934 A schizophrenia risk locus alters brain metal transport and plasma glycosylation

Mealer, R. G.; Jenkins, B. J.; Chen, C.-Y.; Daly, M. J.; Ge, T.; Lehoux, S. D.; Marquardt, T.; Palmer, C. D.; Park, J. H.; Parsons, P. J.; Sackstein, R.; Williams, S. E.; Cummings, R. D.; Scolnick, E. M.; Smoller, J. W.

10.1101/757088 — biochemistry — Posted on 2019-09-06

2935 Measuring C. elegans spatial foraging and food intake using bioluminescent bacteria

Ding, S. S.; Sarkisyan, K. S.; Brown, A. E. X.

10.1101/759928 — animal behavior and cognition — Posted on 2019-09-06

2936 Single Cell RNA-seq reveals ectopic and aberrant lung resident cell populations in Idiopathic Pulmonary Fibrosis

Adams, T. S.; Schupp, J. C.; Poli, S.; Ayaub, E. A.; Neumark, N.; Ahangari, F.; Chu, S. G.; Raby, B.; DeIuliis, G.; Januszyk, M.; Duan, Q.; Arnett, H. A.; Siddiqui, A.; Washko, G. R.; Homer, R.; Yan, X.; Rosas, I. O.; Kaminski, N.

10.1101/759902 — genomics — Posted on 2019-09-06

2937 Positive and negative intra-molecular modulation in a dual-cassette RNA helicase

Vester, K.; Santos, K. F.; Kuropka, B.; Weise, C.; Wahl, M. C.

10.1101/758698 — biochemistry — Posted on 2019-09-06

2938 OR1D2 receptor mediates bourgeonal-induced human CatSper activation in a G-protein dependent manner

Cheng, Y.; Luo, T.; Peng, Z.; Chen, H.; Zhang, J.; Zeng, X.

10.1101/757880 — physiology — Posted on 2019-09-06

2939 Parallel evolution of tobramycin resistance across species and environments

Scribner, M. R.; Santos-Lopez, A.; Marshall, C. W.; Deitrick, C.; Cooper, V. S.

10.1101/758979 — microbiology — Posted on 2019-09-06

2940 Evaluating the effects of alcohol and tobacco use on cardiovascular disease using multivariable Mendelian randomization

Rosoff, D. B.; Davey Smith, G.; Mehta, N.; Clarke, T.-K.; Lohoff, F. W.

10.1101/757146 — genomics — Posted on 2019-09-06

2941 Metabarcoding for parallel identification of species, sex and diet: an application to the conservation of globally-threatened Gyps vultures

Ghosh-Harihar, M.; Gurung, N.; Shukla, H.; Sinha, I.; Pandit, A.; Prakash, V.; Green, R. E.; Ramakrishnan, U.

10.1101/756247 — genetics — Posted on 2019-09-06

2942 Surprising spatiotemporal stability and frequency-independence across multiple fitness peaks driving adaptive radiation in the wild

Martin, C. H.; Gould, K.; Bocklage, C.

10.1101/756908 — evolutionary biology — Posted on 2019-09-06

2943 Greater loss of female embryos during human pregnancy: A novel mechanism.

Mulley, J. F.

10.1101/418186 — developmental biology — Posted on 2019-09-06

2944 Hyperactive MEK1 signaling in cortical GABAergic neurons causes embryonic parvalbumin-neuron death and defects in behavioral inhibition

Holter, M. C.; Hewitt, L. T.; Nishimura, K. J.; Bjorklund, G. R.; Shah, S.; Fry, N. R.; Rees, K. P.; Gupta, T. A.; Daniels, C. W.; Li, G.; Marsh, S.; Treiman, D. M.; Olive, M. F.; Anderson, T. R.; Sanabria, F.; Snider, W. D.; Newbern, J. M.

10.1101/748087 — neuroscience — Posted on 2019-09-06

2945 Does macroscale grey matter morphometry have personality?

Valk, S. L.; Hoffstaedter, F.; Camilleri, J.; Kochunov, P.; Yeo, B. T. T.; Eickhoff, S. B.

10.1101/645945 — neuroscience — Posted on 2019-09-06

2946 The circadian clock contributes to the long-term water use efficiency of Arabidopsis

Simon, N. M.; Comben, N. E.; Hetherington, A. M.; Dodd, A.

10.1101/583526 — plant biology — Posted on 2019-09-06

2947 Early transmission of Plasmodium vivax sensitive strain slows down emergence of drug resistance

Ayala, M. J. C.; Villela, D.

10.1101/603597 — epidemiology — Posted on 2019-09-06

2948 The transcription factor Shox2 shapes thalamocortical neuron firing and synaptic properties

Yu, D.; Maroteaux, M.; Song, Y.; Han, X.; Febbo, I.; Namboodri, C.; Meyer, E.; Rowe, S.; Chen, Y.; Schrader, L.

10.1101/660662 — neuroscience — Posted on 2019-09-06

2949 Auditory predictions and prediction errors in response to self-initiated vowels

Knolle, F.; Schwartze, M.; Schroeger, E.; Kotz, S. A.

10.1101/671990 — neuroscience — Posted on 2019-09-06

2950 Psychotic symptoms in 16p11.2 copy number variant carriers

Jutla, A.; Turner, J. B.; Green Snyder, L.; Chung, W. K.; Veenstra-VanderWeele, J.

10.1101/621250 — neuroscience — Posted on 2019-09-06

2951 Migrant semipalmated sandpipers (Calidris pusilla) have over four decades steadily shifted towards safer stopover locations

Hope, D. D.; Lank, D. B.; Smith, P. A.; Paquet, J.; Ydenberg, R. C.

10.1101/741413 — animal behavior and cognition — Posted on 2019-09-06

2952 An integrated Asian human SNV and indel benchmark combining multiple sequencing methods

10.1101/759043 — genomics — Posted on 2019-09-06

2953 gencore: an efficient tool to generate consensus reads for error suppressing and duplicate removing of NGS data

Chen, S.; Zhou, Y.; Chen, Y.; Huang, T.; Liao, W.; Xu, Y.; Liu, Z.; Gu, J.

10.1101/501502 — bioinformatics — Posted on 2019-09-06

2954 High-resolution 3D imaging and topological mapping of the lymph node conduit system

Kelch, I. D.; Bogle, G.; Sands, G. B.; Phillips, A. R.; LeGrice, I.; Dunbar, R.

10.1101/752972 — immunology — Posted on 2019-09-06

2955 Skewed distributions of LRS: beyond mean and variance

Tuljapurkar, S.; Zuo, W.; Coulson, T.; Horvitz, C.; Gaillard, J.-M.

10.1101/696500 — ecology — Posted on 2019-09-06

2956 PGRMC1 phosphorylation and cell plasticity 2: genomic integrity and CpG methylation

10.1101/737783 — cell biology — Posted on 2019-09-06

2957 Serum-free culture system for spontaneous human mesenchymal stem cell spheroids formation

Dong, G.; Wang, S.; Ge, Y.; Deng, Q.; Cao, Q.; Wang, Q.; Shang, Z.; Ouyang, W.; Li, J.; Liu, C.; Tang, J.; Zhao, W.; Gu, Y.

10.1101/666313 — cell biology — Posted on 2019-09-06

2958 Decoding the Language of Microbiomes: Leveraging Patterns in 16S Public Data using Word-Embedding Techniques and Applications in Inflammatory Bowel Disease

Tataru, C. A.; David, M. M.

10.1101/748152 — bioinformatics — Posted on 2019-09-06

2959 PGRMC1 phosphorylation and cell plasticity 1: glycolysis, mitochondria, tumor growth

Thejer, B. M.; Adhikary, P. P.; Kaur, A.; Teakel, S. L.; Van Oosterum, A.; Seth, I.; Pajic, M.; Hannan, K. M.; Pavy, M.; Poh, P.; Jazayeri, J. A.; Zaw, T.; Pascovici, D.; Ludescher, M.; Pawlak, M.; Cassano, J. C.; Turnbull, L.; Jazayeri, M.; James, A. C.; Coorey, C. P.; Roberts, T. L.; Kinder, S. J.; Hannan, R. D.; Patrick, E.; Molloy, M. P.; New, E. J.; Fehm, T. N.; Neubauer, H.; Goldys, E. M.; Weston, L. A.; Cahill, M. A.

10.1101/737718 — cancer biology — Posted on 2019-09-06

2960 Quantifying the effect of experimental perturbations in single-cell RNA-sequencing data using graph signal processing

Burkhardt, D. B.; Stanley, J. S.; Perdigoto, A. L.; Gigante, S. A.; Herold, K. C.; Wolf, G.; Giraldez, A. J.; van Dijk, D.; Krishnaswamy, S.

10.1101/532846 — bioinformatics — Posted on 2019-09-06

2961 Niche cells spatially restrict stem-cell self-renewal signaling via receptor-ligand degradation

Ladyzhets, S.; Simao, T.; Antel, M.; Inaba, M.

10.1101/414078 — developmental biology — Posted on 2019-09-06

2962 A Systematic Review of the Biomechanical Effects of Harness and Head-Collar use in Dogs

BLAKE, S. P.; Williams, R.; Ferro de Godoy, R.

10.1101/759258 — zoology — Posted on 2019-09-05

2963 Parameter fitting using time-scale analysis for vector borne diseases with spatial dynamics

Sartori, L. M.; Pereira, M. C.; Oliva, S. M.

10.1101/759308 — scientific communication and education — Posted on 2019-09-05

2964 Anti-angiogenic activities of the leaves of Tapinanthus bangwensis (Engl. and K. Krause) Danser Loranthaceae growing on three host trees in south-western Nigeria

Diyaolu, O.; Alfred, A.; Moody, J.

10.1101/759209 — scientific communication and education — Posted on 2019-09-05

2965 Tuber yield and processing quality response of French fried potatoes to nitrogen fertilization

Jiang, L.; Wang, Z.; Jin, G.; Zhang, G.; Zhang, C.

10.1101/759324 — plant biology — Posted on 2019-09-05

2966 KCa3.1-transgene induction in murine skin produces pruritic eczematous dermatitis with severe epidermal hyperplasia and hyperkeratosis

Köhler, R.; Lozano-Gerona, J.; Aida Olivan-Viguera, A.; Delgado-Wicke, P.; Singh, V.; Brown, B. M.; Tapia-Casellas, E.; Pueyo, E.; Valero, M. S.; Garcia-Otin, A.-L.; Giraldo, P.; Abarca-Lachen, E.; Surra, J. C.; Osada, J.; Hamilton, K. L.; Raychaudhuri, S. P.; Marigil, M.; Juarranz, A.; Wulff, H.; Miura, H.; Gilaberte, Y.

10.1101/759274 — physiology — Posted on 2019-09-05

2967 Effects of anesthetic tricaine on stress and reproductive aspects of South American silver catfish (Rhamdia quelen) male

Teixeira, N. d. S.; Marques, L. S.; Rodrigues, R. B.; Gusso, D.; Fossati, A. A. N.; Streit, D.

10.1101/759340 — physiology — Posted on 2019-09-05

2968 Efficacy and safety of a monodisperse solid-in-oil-in-water emulsion in transcatheter arterial chemoembolization in a rabbit VX2 tumor model

Yasui, D.; Yamane, A.; Itoh, H.; Kobayashi, M.; Kumita, S.-i.

10.1101/759316 — pharmacology and toxicology — Posted on 2019-09-05

2969 Ultra-low frequency neural entrainment to pain

Guo, Y.; Bufacchi, R. J.; Novembre, G.; Kilintari, M.; Moayedi, M.; Hu, L.; Iannetti, G.

10.1101/759233 — neuroscience — Posted on 2019-09-05

2970 Effects of Transcranial Direct Current Stimulation on GABA and Glutamate in Children: A Pilot Study

Nwaroh, C.; Giuffre, A.; Cole, L.; Bell, T.; Carlson, H.; MacMaster, F. P.; Kirton, A.; Harris, A. D.

10.1101/759290 — neuroscience — Posted on 2019-09-05

2971 Systems biology analysis of publicly available transcriptomic data reveals a critical link between AKR1B10 gene expression, smoking and occurrence of lung cancer

Cubillos-Angulo, J.; Fukutani, E.; Cruz, L. A. B.; Arriaga, M. B.; Lima, J. V.; Andrade, B. B.; Queiroz, A.; Fukutani, K. F.

10.1101/759282 — genomics — Posted on 2019-09-05

2972 Integrating science and citizen science: the dusky grouper (Epinephelus marginatus) sustainable fishery of Copacabana, Rio de Janeiro, Brazil

Begossi, A. -; Salivonchyk, S. V.

10.1101/759357 — ecology — Posted on 2019-09-05

2973 The inverse relationship between fibronectin and neuroligins in the embryonic rat colon

Gao, N.; Hou, P.; Zhang, Q.; Mu, W.; Wang, J.; Wang, D.; Li, A.

10.1101/759266 — cell biology — Posted on 2019-09-05

2974 The expression of cannabinoid-related genes in different cellular models of disease

Wu, X.; Arlen, P. A.

10.1101/759332 — cancer biology — Posted on 2019-09-05

2975 Selective activation of estrogen receptors α and β: Implications for depressive-like phenotypes in female mice exposed to chronic unpredictable stress

Eid, R. S.; Lieblich, S. E.; Mah, A. G.; Chaiton, J.; Wen, Y.; Wong, S.; Galea, L. A.

10.1101/758862 — neuroscience — Posted on 2019-09-05

2976 Use of Nanosphere Self-Assembly to Pattern Nanoporous Membranes for the Study of Extracellular Vesicles

Mireles, M.; Soule, C. W.; Dehghani, M.; Gaborski, T. R.

10.1101/758391 — bioengineering — Posted on 2019-09-05

2977 Tracking infection dynamics at single-cell level reveals highly resolved expression programs of a large virus infecting algal blooms

Ku, C.; Sheyn, U.; Sebe-Pedros, A.; Ben-Dor, S.; Schatz, D.; Tanay, A.; Rosenwasser, S.; Vardi, A.

10.1101/757542 — microbiology — Posted on 2019-09-05

2978 Detecting fabrication in large-scale molecular omics data

Bradshaw, M. S.; Payne, S. H.

10.1101/757070 — bioinformatics — Posted on 2019-09-05

2979 A precision virtual crossmatch decision support system for interpretation of ambiguous molecular HLA typing data

Kaur, N.; Pinelli, D.; Kransdorf, E.; Pando, M.; Smith, G.; Murphey, C.; Kamoun, M.; Bray, R.; Tambur, A.; Gragert, L.

10.1101/756809 — immunology — Posted on 2019-09-05

2980 Urbanization and market-integration have strong, non-linear effects on metabolic health in the Turkana tribe

Lea, A. J.; Martins, D.; Kamau, J.; Gurven, M.; Ayroles, J.

10.1101/756866 — evolutionary biology — Posted on 2019-09-05

2981 CVRMS: Cross-validated Rank-based Marker Selection for Genome-wide Prediction of Low Heritability

Jeong, S.; Kim, J.-Y.; Kim, N.

10.1101/756130 — bioinformatics — Posted on 2019-09-05

2982 DirectMS1: MS/MS-free identification of 1000 proteins of cellular proteomes in 5 minutes

Ivanov, M. V.; Bubis, J. A.; Gorshkov, V.; Tarasova, I. A.; Levitsky, L. I.; Lobas, A. A.; Solovyeva, E. M.; Pridatchenko, M. L.; Kjeldsen, F.; Gorshkov, M. V.

10.1101/756213 — biochemistry — Posted on 2019-09-05

2983 Development of a monkey avatar to study social perception in macaques

Wilson, V.; Kade, C.; Moeller, S.; Treue, S.; Kagan, I.; Fischer, J.

10.1101/758458 — animal behavior and cognition — Posted on 2019-09-05

2984 Metabolic models of mixed culture fermentation diagnose bottlenecks and predict strategies for improved medium-chain fatty acid production

Scarborough, M. J.; Hamilton, J. J.; Erb, E. A.; Donohue, T. J.; Noguera, D. R.

10.1101/759548 — microbiology — Posted on 2019-09-05

2985 PCNA ubiquitination protects stalled replication forks from DNA2-mediated degradation by regulating Okazaki fragment maturation and chromatin assembly

Thakar, T.; Leung, W.; Nicolae, C. M.; Clements, K. E.; Shen, B.; Bielinsky, A.-K.; Moldovan, G.-L.

10.1101/759985 — molecular biology — Posted on 2019-09-05

2986 Senolytic treatment targets aberrant p21-expression to restore liver regeneration in adult mice

Ritschka, B.; Knauer-Meyer, T.; Mas, A.; Plassat, J.-L.; Sampaio Goncalves, D.; Jacobs, H.; Pedone, E.; Di Vicino, U.; Cosma, M. P.; Keyes, W. M.

10.1101/759530 — cell biology — Posted on 2019-09-05

2987 Thirty five novel nsSNPs may effect on ADAMTS13 protein leading to Thrombotic thrombocytopenic purpura (TTP) using bioinformatics approach

Abdelhameed, T. A.; Ahmed, A. I.; Mustafa, M. I.; Eltayeb, A. N.; Abdelrhman, F. A.; Ahmed, A. B.; Ahmed, N. B.; Khadir, H. Y.; Mohamed, H. K.; Osman, S. A.; Hassan, M. A.

10.1101/759787 — bioinformatics — Posted on 2019-09-05

2988 Functional coupling between NMDA receptors and SK channels in rat hypothalamic magnocellular neurons: altered mechanisms during heart failure.

Ferreira-Neto, H. C.; Sterm, J. E.

10.1101/759720 — neuroscience — Posted on 2019-09-05

2989 It takes two (Las1 HEPN Endoribonuclease Motifs) to cut the RNA right

Pillon, M. C.; Goslen, K. H.; Williams, J. G.; Stanley, R. E.

10.1101/760058 — molecular biology — Posted on 2019-09-05

2990 Novel Universal Primers For Metabarcoding eDNA Surveys Of Marine Mammals And Other Marine Vertebrates

Valsecchi, E.; Bylemans, J.; Goodman, S. J.; Lombardi, R.; Carr, I.; Castellano, L.; Galimberti, A.; Galli, P.

10.1101/759746 — ecology — Posted on 2019-09-05

2991 In vitro model for resistance in oncogene-dependent tumors at the limit of radiological detectability

Müller, N.; Brägelmann, J.; Lorenz, C.; Michel, U. P.; Plenker, D.; Ortiz-Cuaran, S.; Weiss, J.; Büttner, R.; Peifer, M.; Thomas, R. K.; Sos, M. L.; Berg, J.

10.1101/756593 — cancer biology — Posted on 2019-09-05

2992 Low concordance of short-term and long-term selection responses in experimental Drosophila populations

Langmüller, A. M.; Schlötterer, C.

10.1101/759704 — molecular biology — Posted on 2019-09-05

2993 Ubiquitylated H2A.Z nucleosomes are associated with nuclear architectural proteins and global transcriptional silencing

Ng, M. K.; Braunschweig, U.; Blencowe, B.; Cheung, P.

10.1101/759852 — biochemistry — Posted on 2019-09-05

2994 Environmental sensing in dynamic quorum responses

Chu, E. K.; Groisman, A.; Levchenko, A.

10.1101/745091 — systems biology — Posted on 2019-09-05

2995 ODORANT RECEPTOR INHIBITION IS FUNDAMENTAL TO ODOR ENCODING

Pfister, P.; Smith, B. C.; Evans, B. J.; Brann, J. H.; Trimmer, C.; Sheik, M.; Arroyave, R.; Reddy, G.; Jeong, H.-Y.; Raps, D. A.; Peterlin, Z.; Vergassola, M.; Rogers, M. E.

10.1101/760033 — neuroscience — Posted on 2019-09-05

2996 Serotonergic modulation of walking in Drosophila

Howard, C. E.; Chen, C.-L.; Tabachnik, T.; Hormigo, R.; Ramdya, P.; Mann, R. S.

10.1101/753624 — neuroscience — Posted on 2019-09-05

2997 Cardiac competence of the head mesoderm fades concomitant with a shift towards the head skeletal muscle programme

Alzamrooni, A. M. A. M.; Murciano, N.; Dietrich, S.

10.1101/759506 — developmental biology — Posted on 2019-09-05

2998 Generation of Recombinant Mammalian Selenoproteins through Genetic Code Expansion with Photocaged Selenocysteine

Peeler, J.; Kelemen, R.; Abo, M.; Edinger, L.; Chen, J.; Chatterjee, A.; Weerapana, E.

10.1101/759662 — biochemistry — Posted on 2019-09-05

2999 Gamma-protocadherin localization at the synapse corresponds to parameters of synaptic maturation

LaMassa, N.; Sverdlov, H.; Bucaro, M.; Fernandez-Monreal, M.; Phillips, G. R.

10.1101/760041 — neuroscience — Posted on 2019-09-05

3000 Genes encoding recognition of the Cladosporium fulvum effector protein Ecp5 are encoded at several loci in the tomato genome

Iakovidis, M.; Soumpourou, E.; Anderson, E.; Etherington, G.; Yourstone, S.; Thomas, C. M.

10.1101/759761 — genetics — Posted on 2019-09-05

Yan, Y.; Li, Z.; Li, Y.; Wu, Z.; Yang, R.

10.1101/759589 — evolutionary biology — Posted on 2019-09-05

3002 Enzyme-free synthesis of natural phospholipids in water

Liu, L.; Zou, Y.; Bhattacharya, A.; Zhang, D.; Lang, S. Q.; Houk, K. N.; Devaraj, N. K.

10.1101/746156 — biochemistry — Posted on 2019-09-05

3003 Homo-Oligomers in Signal Transduction: ModellingApproaches, Homeostasis, Ultrasensitivity, Bistability

Koch, D.

10.1101/758789 — systems biology — Posted on 2019-09-05

3004 Induction of Activity Synchronization among Primed Hippocampal Neurons out of Random Dynamics is Key for Trace Memory Formation and Retrieval

Zhou, Y.; Qiu, L.; Wang, H.; Chen, X.

10.1101/757229 — neuroscience — Posted on 2019-09-05

3005 Experience-dependent structural plasticity at pre- and postsynaptic sites of layer 2/3 cells in developing visual cortex

Sun, Y. J.; Espinosa, J. S.; Hoseini, M. S.; Stryker, M. P.

10.1101/743690 — neuroscience — Posted on 2019-09-05

3006 GeneWalk identifies relevant gene functions for a biological context using network representation learning

Ietswaart, R.; Gyori, B. M.; Bachman, J. A.; Sorger, P. K.; Churchman, L. S.

10.1101/755579 — bioinformatics — Posted on 2019-09-05

3007 Complement-dependent synapse loss and microgliosis in a mouse model of multiple sclerosis

Hammond, J. W.; Bellizzi, M. J.; Ware, C.; Qiu, W. Q.; Saminathan, P.; Li, H.; Luo, S.; Li, Y.; Gelbard, H.

10.1101/720649 — neuroscience — Posted on 2019-09-05

3008 Lgr5 Controls Extracellular Matrix Production By Stem Cells In The Developing Intestine

Fernandez-Vallone, V.; Leprovots, M.; Gerbier, R.; Ribatallada-Soriano, D.; Lefort, A.; Libert, F.; Vassart, G.; Garcia, M.-I.

10.1101/757641 — developmental biology — Posted on 2019-09-05

3009 Selection of sequence motifs and generative Hopfield-Potts models for protein families

Shimagaki, K.; Weigt, M.

10.1101/652784 — bioinformatics — Posted on 2019-09-05

3010 Differential gene expression and functional pathway enrichment in colon cell line CCD 841 CoN (CRL-1790) transfected with miR-mimics miR-18b, miR-142-3p, miR-155, and miR-890.

Robinson, J.

10.1101/747931 — molecular biology — Posted on 2019-09-05

3011 Cultural evolution by capital accumulation

Andre, J.-B.; Baumard, N.

10.1101/707620 — evolutionary biology — Posted on 2019-09-05

3012 Community-level impacts of spatial repellents for control of diseases vectored by Aedes aegypti mosquitoes

ten Bosch, Q. A.; Wagman, J. M.; Castro-Llanos, F.; Achee, N. L.; Grieco, J. P.; Perkins, A.

10.1101/501700 — epidemiology — Posted on 2019-09-05

3013 Long-term effects of fire on Arctic tundra vegetation in Western Siberia

Heim, R. J.; Bucharova, A.; Rieker, D.; Yurtaev, A.; Kamp, J.; Hoelzel, N.

10.1101/756163 — ecology — Posted on 2019-09-05

3014 Adaptation mechanism of the adult zebrafish respiratoryorgan to endurance training

Messerli, M.; Aaldijk, D.; Haberthür, D.; Röss, H.; Sande Melon, M.; Garcia Poyatos, C.; Khoma, O.-Z.; Wieland, F. A. M.; Fark, S.; Djonov, V.

10.1101/744300 — developmental biology — Posted on 2019-09-05

3015 Robustness of the Dorsal morphogen gradient with respect to morphogen dosage

Al Asafen, H.; Bandodkar, P. U.; Carrell-Noel, S.; Reeves, G. T.

10.1101/739292 — developmental biology — Posted on 2019-09-05

3016 Confined filaments in soft vesicles - case of sickle red blood cells

Behera, A.; Kumar, G.; Sain, A.

10.1101/758060 — biophysics — Posted on 2019-09-05

3017 Homo-Oligomers in Signal Transduction: ModellingApproaches, Homeostasis, Ultrasensitivity, Bistability

Koch, D.

10.1101/758789 — systems biology — Posted on 2019-09-05

3018 Paclitaxel-induced peripheral neuropathy is caused by epidermal ROS and mitochondrial damage through conserved MMP-13 activation

Cirrincione, A. M.; Rieger, S.; Pellegrini, A. D.; Dominy, J.; Benjamin, M. E.; Utkina-Sosunova, I.; Lotti, F.; Jergova, S.; Sagen, J.

10.1101/743419 — pathology — Posted on 2019-09-05

3019 The localization of chitin synthase mediates the patterned deposition of chitin in developing Drosophila bristles.

Adler, P. N.

10.1101/718841 — developmental biology — Posted on 2019-09-05

3020 Machine learning based detection of genetic and drug class variant impact on functionally conserved protein binding dynamics

Babbitt, G. A.; Fokoue, E. P.; Evans, J. R.; Diller, K. I.; Adams, L. E.

10.1101/724211 — biophysics — Posted on 2019-09-05

3021 Epicardial therapy with atrial appendage micrografts salvages myocardium after infarction

Yanbo, X.; Lampinen, M. A.; Takala, J. M.; Sikorski, V. T. J.; Soliymani, R.; Tarkia, M.; Lalowski, M. M.; Mervaala, E. M. A.; Kupari, M.; Zheng, Z.; Hu, S.; Harjula, A.; Kankuri, E.; Consortium, A.

10.1101/712778 — bioinformatics — Posted on 2019-09-05

3022 Metabolic Control of Viral Infection through PPAR-α Regulation of STING Signaling

Tao, L.; Lowe, A.; Wang, G.; Dozmorov, I.; Chang, T.; Yan, N.; Reese, T. A.

10.1101/731208 — immunology — Posted on 2019-09-05

3023 Increased genetic marker density reveals high levels of admixture between red deer and introduced Japanese sika in Kintyre, Scotland

McFarlane, S. E.; Hunter, D. C.; Senn, H. V.; Smith, S. L.; Holland, R.; Huisman, J.; Pemberton, J. M.

10.1101/588327 — evolutionary biology — Posted on 2019-09-05

3024 Organization of Associating or Crosslinked Actin Filaments in Confinement

Adeli Koudehi, M.; Rutkowski, D. M.; Vavylonis, D.

10.1101/614354 — biophysics — Posted on 2019-09-05

3025 DeepCLIP: Predicting the effect of mutations on protein-RNA binding with Deep Learning

Groenning, A. G. B.; Doktor, T. K.; Larsen, S. J.; Petersen, U. S. S.; Holm, L. L.; Bruun, G. H.; Hansen, M. B.; Hartung, A.-M.; Baumbach, J.; Andresen, B. S.

10.1101/757062 — bioinformatics — Posted on 2019-09-05

3026 Accelerating Protein Design Using Autoregressive Generative Models

Riesselman, A. J.; Shin, J.-E.; Kollasch, A. W.; McMahon, C.; Simon, E.; Sander, C.; Manglik, A.; Kruse, A. C.; Marks, D. S.

10.1101/757252 — systems biology — Posted on 2019-09-05

3027 Quantifying nerve decussation abnormalities in the optic chiasm

Puzniak, R. J.; Ahmadi, K.; Kaufmann, J.; Gouws, A.; Morland, A. B.; Pestilli, F.; Hoffmann, M. B.

10.1101/633347 — neuroscience — Posted on 2019-09-05

3028 Deep Learning-Based Analysis of Macaque Corneal Sub-Basal Nerve Fibers in Confocal Microscopy Images

Oakley, J. D.; Russakoff, D. B.; Weinberg, R. L.; McCarron, M. E.; Izzi, J. M.; Mankowski, J. L.

10.1101/758433 — neuroscience — Posted on 2019-09-05

3029 GISA: Using Gauss Integrals to identify rare conformations in protein structures

Gronbaek, C.; Hamelryck, T.; Rogen, P.

10.1101/758029 — bioinformatics — Posted on 2019-09-05

3030 hsp-16.2 chaperone biomarkers track physiological states of proteome dosage

Burnaevskiy, N.; Sands, B.; Yun, S.; Tedesco, P. M.; Johnson, T. E.; Kaeberlein, M.; Brent, R.; Mendenhall, A. R.

10.1101/431643 — systems biology — Posted on 2019-09-05

3031 High-throughput fluorescence-based screen identifies the neuronal microRNA miR-124 as a positive regulator of alphavirus infection

Lopez, P.; Girardi, E.; Mounce, B. C.; Weiss, A.; Chane-Woon-Ming, B.; Messmer, M.; Kaukinen, P.; Kopp, A.; Bortolamiol-Becet, D.; Fendri, A.; Vignuzzi, M.; Brino, L.; Pfeffer, S.

10.1101/758201 — molecular biology — Posted on 2019-09-05

3032 Intra-species DNA exchange: Bacillus subtilis prefers sex with less related strains

Stefanic, P.; Belcijan, K.; Kraigher, B.; Kostanjsek, R.; Nesme, J.; Madsen, j.; Kovac, J.; Sorensen, S. J.; Vos, M.; Mandic-Mulec, I.

10.1101/756569 — microbiology — Posted on 2019-09-05

3033 Cheating emergences in the arbuscular mycorrhizal mutualism: a network and phylogenetic analysis

Perez-Lamarque, B.; Selosse, M.-A.; Opik, M.; Morlon, H.; Martos, F.

10.1101/500504 — evolutionary biology — Posted on 2019-09-05

3034 MTH1 promotes mitotic progression to avoid oxidative DNA damage in cancer cells

Gad, H.; Mortusewicz, O.; Rudd, S. G.; Stolz, A.; Amaral, N.; Brautigam, L.; Pudelko, L.; Sanjiv, K.; Kalderen, C.; Jemth, A.-S.; Almlof, I.; Visnes, T.; Schultz, N.; Bostrom, J.; Calderon Montano, J. M.; Hagenkort, A.; Groth, P.; Loseva, O.; Gokturk, C.; Koolmeister, T.; Wakchaure, P.; Homan, E.; Strom, C. E.; Scobie, M.; Bastians, H.; Warpman Berglund, U.; Helleday, T.

10.1101/575290 — cancer biology — Posted on 2019-09-05

3035 Immunoinformatic and dynamic simulation-based designing of a multi-epitope vaccine against emerging pathogen Elizabethkingia anophelis

Nain, Z.; Abdullah, F.; Rahman, M. M.; Karim, M. M.; Rahman, S. M. R.; Khan, M. S. A.; Sayed, S. B.; Sheam, M. M.; Haque, Z.; Adhikari, U. K.

10.1101/758219 — bioinformatics — Posted on 2019-09-05

3036 Connecting Histopathology Imaging and Proteomics in Kidney Cancer through Machine Learning

Azuaje, F.; Kim, S.-Y.; Perez Hernandez, D.; Dittmar, G.

10.1101/756288 — systems biology — Posted on 2019-09-05

3037 Genotyping complex structural variation at the malaria-associated human glycophorin locus using a PCR-based strategy

Algady, W.; Weyell, E.; Mateja, D.; Garcia, A.; Courtin, D.; Hollox, E.

10.1101/758334 — genetics — Posted on 2019-09-05

3038 Population-scale prediabetic assessment using HbA1c from menstrual blood

Srinivasan, L.; Khilnani, R.; Fung, P.; Low, M.; Esquivel, U.; White, B.; Sidhu, G.; Rangel, J.; Lim, S. A.; Sudhof, L. S.; Aleman, J. O.

10.1101/758805 — pathology — Posted on 2019-09-05

3039 The genetic landscape of Ethiopia: diversity, intermixing and the association with culture

Lopez, S.; Tarekegn, A.; Band, G.; van Dorp, L.; Oljira, T.; Mekonnen, E.; Bekele, E.; Blench, R.; Thomas, M. G.; Hellenthal, G.

10.1101/756536 — genetics — Posted on 2019-09-05

3040 Optical measurements of endogenous ion channel voltage sensor activation in tissue

Thapa, P.; Stewart, R.; Sepela, R. J.; Vivas, O.; Parajuli, L. K.; Lillya, M.; Fletcher-Taylor, S.; Cohen, B. E.; Zito, K.; Sack, J. T.

10.1101/541805 — biophysics — Posted on 2019-09-05

3041 Uncovering the dynamic mechanisms of the Pseudomonas aeruginosa quorum sensing and virulence networks using Boolean modelling

Banzhaf, M.; Resendis Antonio, O.; Zepeda Mendoza, M. L.

10.1101/756551 — bioinformatics — Posted on 2019-09-05

3042 Selective peak inference: Unbiased estimation of raw and standardized effect size at local maxima

Davenport, S. J.; Nichols, T. E.

10.1101/500512 — neuroscience — Posted on 2019-09-05

3043 Genetic effect estimates in case-control studies when a continuous variable is omitted from the model

Sheng, Y.; Huang, C.-Y.; Lobach, S.; Zablotska, L.; Lobach, I.

10.1101/756015 — genetics — Posted on 2019-09-05

3044 Detection of ctDNA from dried blood spots after DNA size selection

Heider, K.; Wan, J. C.; Hall, J.; Boyle, S.; Hudecova, I.; Gale, D.; Cooper, W. N.; Corrie, P. G.; Brenton, J. D.; Smith, C. G.; Rosenfeld, N.

10.1101/759365 — cancer biology — Posted on 2019-09-05

3045 Cardiac-evoked long-range quantum entanglement in the conscious brain

Kerskens, C.; Lopez Perez, D.

10.1101/219931 — biophysics — Posted on 2019-09-05

3046 Identification of Platform-Independent Diagnostic Biomarker Panel for Hepatocellular Carcinoma using Large-scale Transcriptomics Data

Kaur, H.; Dhall, A.; Kumar, R.; Raghava, G. P. S.

10.1101/758250 — bioinformatics — Posted on 2019-09-05

3047 miR-206 enforces a slow muscle phenotype

Bjorkman, K. K.; Guess, M. G.; Harrison, B. C.; Polmear, M. M.; Peter, A. K.; Leinwand, L. A.

10.1101/756981 — molecular biology — Posted on 2019-09-05

3048 Ethanol stress stimulates sumoylation of transcription factor Cst6 which restricts expression of its target genes

Sri Theivakadadcham, V. S.; Rosonina, E.

10.1101/758607 — molecular biology — Posted on 2019-09-05

3049 Hallmarks of frailty and osteosarcopenia in prematurely aged PolgAD257A/D257A mice: a preclinical model to test anabolic interventions

Scheuren, A. C.; D'Hulst, G.; Kuhn, G. A.; Masschelein, E.; Wehrle, E.; De Bock, K.; Müller, R.

10.1101/758243 — physiology — Posted on 2019-09-05

3050 Putatively cancer-specific alternative splicing is shared across patients and present in developmental and other non-cancer cells

David, J. K.; Maden, S. K.; Weeder, B. R.; Thompson, R. F.; Nellore, A.

10.1101/754044 — cancer biology — Posted on 2019-09-05

3051 Folding RNA in mixtures of monovalent and divalent cations: Theory and simulations

Nguyen, H. T.; Hori, N.; Thirumalai, D.

10.1101/732917 — biophysics — Posted on 2019-09-05

3052 EEG-based classification of natural sounds reveals specialized responses to speech and music

Zuk, N. J.; Teoh, E. S.; Lalor, E. C.

10.1101/755553 — neuroscience — Posted on 2019-09-05

3053 Growth-regulated Hsp70 phosphorylation regulates stress responses and prion maintenance

Kao, C.-H.; Ryu, S.; Kim, M. J.; Wen, X.; Wimalarathne, O.; Paull, T. T.

10.1101/759241 — molecular biology — Posted on 2019-09-05

3054 FACT mediates cohesin function on chromatin

Garcia-Luis, J.; Lazar-Stefanita, L.; Gutierrez-Escribano, P.; Thierry, A.; Garcia, A.; Gonzalez, S.; Sanchez, M.; Jarmuz, A.; Montoya, A.; Dore, M.; Krammer, H.; Karimi, M.; Koszul, R.; Antequera, F.; Aragon, L.

10.1101/756601 — molecular biology — Posted on 2019-09-05

3055 Isolates from ancient permafrost help to elucidate species boundaries in Acanthamoeba castellanii complex (Amoebozoa: Discosea)

Malavin, S. A.; Shmakova, L. A.

10.1101/755348 — evolutionary biology — Posted on 2019-09-05

3056 Data-based RNA-seq Simulations by Binomial Thinning

Gerard, D.

10.1101/758524 — bioinformatics — Posted on 2019-09-05

3057 ERR agonism reverses mitochondrial dysfunction and inflammation in aging

Wang, X. X.; Takahashi, S.; Libby, A. E.; Myakala, K.; Jones, B. A.; Bhasin, K.; Qi, Y.; Krausz, K.; Zerfas, P.; Panov, J.; velenosi, t. J.; patel, d. P.; Daneshpajouhnejad, P.; Ginley, B.; Sarder, P.; Titievsky, A.; Sharov, V.; Ostretsov, B.; Kopp, J. B.; Rosenberg, A. Z.; Gonzalez, F. J.; Guha, U.; Brodsky, L.; Burris, T.; Levi, M.

10.1101/755801 — pathology — Posted on 2019-09-05

3058 Neurovegetative symptom subtypes in young people with major depressive disorder and their structural brain correlates

Toenders, Y. J.; Schmaal, L.; Harrison, B. J.; Dinga, R.; Berk, M.; Davey, C.

10.1101/755447 — neuroscience — Posted on 2019-09-05

3059 Short-term test-retest reliability of the human intrinsic functional connectome

Tozzi, L.; Fleming, S. L.; Taylor, Z. D.; Raterink, C. D.; Williams, L. M.

10.1101/755900 — neuroscience — Posted on 2019-09-05

3060 The Chikungunya virus nsP3 macro domain inhibits activation of the NF-κB pathway

Roberts, G. C.; Stonehouse, N. J.; Harris, M.

10.1101/756320 — microbiology — Posted on 2019-09-05

3061 Zic2 abrogates an alternative Wnt signaling pathway to convert axon attraction into repulsion

Herrera, E.; Morenilla-Palao, C.; Lopez-Cascales, M. T.; Lopez-Atalaya, J. P.; Baeza, D.; Calvo, L.; Giner de Gracia, A.; Barco, A.

10.1101/759407 — developmental biology — Posted on 2019-09-05

3062 A kinematic analysis of Micrurus coral snakes reveals unexpected variation in stereotyped anti-predator displays within a mimicry system

Moore, T. Y.; Danforth, S. M.; Larson, J. G.; Davis Rabosky, A. R.

10.1101/754994 — animal behavior and cognition — Posted on 2019-09-05

3063 Charting the native architecture of thylakoid membranes with single-molecule precision

Wietrzynski, W.; Schaffer, M.; Tegunov, D.; Albert, S.; Kanazawa, A.; Plitzko, J. M.; Baumeister, W.; Engel, B. D.

10.1101/759001 — plant biology — Posted on 2019-09-05

3064 Mental Workload Estimation Using Wireless EEG Signals

Adewale, Q.; Panoutsos, G.

10.1101/755033 — neuroscience — Posted on 2019-09-05

3065 Neuromodulation and Differential Learning Across Mosquito Species

Wolff, G. H.; Lahondere, C.; Vinauger, C.; Riffell, J. A.

10.1101/755017 — neuroscience — Posted on 2019-09-05

3066 Modeling brain dynamics after tumor resection using The Virtual Brain

Aerts, H.; Schirner, M.; Dhollander, T.; Jeurissen, B.; Achten, E.; Van Roost, D.; Ritter, P.; Marinazzo, D.

10.1101/752931 — neuroscience — Posted on 2019-09-05

3067 Increased contrast of the grey-white matter boundary in the motor, visual and auditory areas in Autism Spectrum Disorders

Fouquet, M.; Traut, N.; Beggiato, A.; Delorme, R.; Bourgeron, T.; Toro, R.

10.1101/750117 — neuroscience — Posted on 2019-09-05

Sanders, Z.-b.; Wesselink, D. B.; Dempsey-Jones, H.; Makin, T. R.

10.1101/754648 — neuroscience — Posted on 2019-09-05

3069 Evidence of Absence Treated as Absence of Evidence: The Effects of Variation in the Number and Distribution of Gaps Treated as Missing Data on the Results of Standard Maximum Likelihood Analysis

Jacob Machado, D.; Castroviejo-Fisher, S.; Grant, T.

10.1101/755009 — evolutionary biology — Posted on 2019-09-05

3070 Population-level sensitivity to landscape variables reflects individual-based habitat selection in a woodland bat species

Jan, P.-L.; Zarzoso-Lacoste, D.; Fourcy, D.; Baudouin, A.; Farcy, O.; Boireau, J.; Le Gouar, P.; Puechmaille, S. J.; Petit, E. J.

10.1101/752733 — ecology — Posted on 2019-09-05

3071 Disrupting the leukemia niche in the central nervous system attenuates leukemia chemoresistance

Jonart, L. M.; Ebadi, M.; Basile, P.; Johnson, K.; Makori, J.; Gordon, P. M.

10.1101/750547 — cancer biology — Posted on 2019-09-05

3072 Frequency-dependent organization of the brain’s functional network through delayed-interactions

Ziaeemehr, A.; Zarei, M.; Valizadeh, A.; Mirasso, C.

10.1101/754622 — neuroscience — Posted on 2019-09-05

3073 A Modular Master Regulator Landscape Determines the Impact of Genetic Alterations on the Transcriptional Identity of Cancer Cells

Paull, E. O.; Aytes, A.; Subramaniam, P.; Giorgi, F. M.; Douglass, E. F.; Chu, B.; Jones, S. J.; Zheng, S.; Verhaak, R.; Abate-Shen, C. T.; Alvarez, M.; Califano, A.

10.1101/758268 — bioinformatics — Posted on 2019-09-05

3074 Design and analysis of the 4-anilino-quin(az)oline kinase inhibition profiles of GAK/SLK/STK10 using quantitative structure activity relationships

Asquith, C. R. M.; Laitinen, T.; Bennett, J. M.; Wells, C. I.; Elkins, J. M.; Zuercher, W. J.; Tizzard, G. J.; Poso, A.

10.1101/757047 — biochemistry — Posted on 2019-09-05

3075 Analysis of genes within the schizophrenia-linked 22q11.2 deletion identifies interaction of night owl/LZTR1 and NF1 in GABAergic sleep control

Maurer, G. W.; Malita, A.; Nagy, S.; Koyama, T.; Werge, T.; Halberg, K. A.; Texada, M. J.; Rewitz, K.

10.1101/755454 — animal behavior and cognition — Posted on 2019-09-05

3076 Visualizing in vitro-in vivo correlation of miktoarm copolymer nanomicelles in cancer cellular uptake and trafficking

Cui, Z.; Zhang, X.; Zhang, X.; He, S.; Gao, W.; He, B.; Wang, X.; Zhang, H.; Zhong, Z.; Zhang, Q.

10.1101/755595 — pharmacology and toxicology — Posted on 2019-09-05

3077 An integrated analysis across separate task domains reveals a lack of common processing in the ADHD brain

Chauvin, R. J.; Buitelaar, J. K.; Oldehinkel, M.; Franke, B.; Hartman, C.; Heslenfeld, D. J.; Hoekstra, P. J.; Oosterlaan, J.; Beckmann, C. F.; Mennes, M.

10.1101/755603 — neuroscience — Posted on 2019-09-05

3078 Signals of anticipation of reward and of mean reward rates in the human brain

Viviani, R.; Dommes, L.; Bosch, J. E.; Steffens, M.; Paul, A.; Schneider, K. L.; Stingl, J. C.; Beschoner, P.

10.1101/754663 — neuroscience — Posted on 2019-09-05

3079 Interacting with volatile environments stabilizes hidden-state inference and its brain signatures

Weiss, A.; Chambon, V.; Drugowitsch, J.; Wyart, V.

10.1101/755223 — neuroscience — Posted on 2019-09-05

3080 Genome-wide association analyses of multiple traits in Duroc pigs using low-coverage whole-genome sequencing strategy

Yang, R.; Guo, X.; Zhu, D.; Bian, C.; Zhao, Y.; Wang, Y.; Hu, X.; Li, N.

10.1101/754671 — genetics — Posted on 2019-09-05

3081 Social bonding induces changes in brain functional connectivity in male and female monogamous voles: a longitudinal fMRI study

Lopez-Gutierrez, M. F.; Ortiz, J. J.; Camacho, F. J.; Young, L. J.; Paredes, R. G.; Diaz, N. F.; Portillo, W.; Alcauter, S.

10.1101/752345 — animal behavior and cognition — Posted on 2019-09-05

3082 The basolateral nucleus of the amygdala regulates both the predictive and incentive motivational properties of reward cues

Servonnet, A.; Hernandez, G.; El Hage, C.; Rompre, P.-P.; Samaha, A.-N.

10.1101/755785 — animal behavior and cognition — Posted on 2019-09-05

3083 High-Throughput Functional Annotation of Natural Products by Integrated Activity Profiling

MacMillan, J. B.; Linington, R. G.; Hight, S. K.; Lokey, R. S.; Bray, W.; Kurita, K.; Shaikh, A.; Haeckl, J.; La, S.; Lohith, A.; McMillan, E. A.; White, M. A.; Clark, T. N.; Lee, J.; Carnevale, F.; Vaden, R. M.; Wei, S.

10.1101/748129 — pharmacology and toxicology — Posted on 2019-09-05

3084 NLIMED: Natural Language Interface for Model Entity Discovery in Biosimulation Model Repositories

Munarko, Y.; Sarwar, D. M.; Atalag, K.; Nickerson, D. P.

10.1101/756304 — bioinformatics — Posted on 2019-09-05

3085 Refining modules to determine functionally significant clusters in molecular networks

Kaalia, R.; Rajapakse, J. C.

10.1101/756064 — bioinformatics — Posted on 2019-09-05

3086 Structural Pathway for Allosteric Activation of the Autophagic PI 3-Kinase Complex I

Young, L. N.; Goerdeler, F.; Hurley, J. H.

10.1101/758797 — biochemistry — Posted on 2019-09-05

3087 Elements of a stochastic 3D prediction engine in larval zebrafish prey capture

Bolton, A. D.; Haesemeyer, M.; Jordi, J.; Schaechtle, U.; Saad, F. A.; Mansinghka, V. K.; Tenenbaum, J. B.; Engert, F.

10.1101/755777 — animal behavior and cognition — Posted on 2019-09-05

3088 No division of labour, and subfertile foundresses, in a phyllode-gluing Acacia thrips

Gilbert, J. D.

10.1101/755371 — ecology — Posted on 2019-09-05

3089 Compilation of 29-year postmortem examinations identifies a \"Millennium bug\" in equine parasite communities

Salle, G.; Guillot, J.; Tapprest, J.; Foucher, N.; Sevin, C.; Laugier, C.

10.1101/756254 — zoology — Posted on 2019-09-05

3090 Statistical significance in DTI group analyses: How the choice of the estimator can inflate effect sizes

David, S.; Mesri, H. Y.; Viergever, M. A.; Leemans, A.

10.1101/755140 — neuroscience — Posted on 2019-09-05

3091 Biological insights from self-perceived facial aging data of the UKBB participants

Vigodner, S.; Khanin, R.

10.1101/758854 — genomics — Posted on 2019-09-05

3092 Phylogenomic Testing of Root Hypotheses Without a Species Tree

Tria, F. D. K.; Landan, G.; Dagan, T.

10.1101/758581 — evolutionary biology — Posted on 2019-09-05

3093 Single-cell transcriptomic landscape of cardiac neural crest cell derivatives during embryonic and neonatal development

Liu, X.; Chen, W.; Li, W.; Zeng, Z.; Priest, J. R.; Zhou, Z.

10.1101/759118 — developmental biology — Posted on 2019-09-05

3094 CaATP prolongs strong actomyosin binding and promotes futile myosin stroke

Ge, J.; Iragavarapu, A. G.; Nesmelova, I. V.; Nesmelov, Y. E.

10.1101/756627 — biochemistry — Posted on 2019-09-05

3095 Checkpoint kinase 2 regulates prostate cancer cell growth through physical interactions with the androgen receptor

Ta, H. Q.; Dworak, N.; Ivey, M. L.; Gioeli, D.

10.1101/759142 — biochemistry — Posted on 2019-09-05

3096 Developmental Reactive Oxygen Species Target Histone Methylation to Individualize Stress resistance and Lifespan

Bazopoulou, D.; Knoefler, D.; Yongxin Zheng, Y.; Ulrich, K.; Oleson, B.; Xie, L.; Kim, M.; Kaufmann, A.; Lee, Y.-T.; Dou, Y.; Chen, Y.; Quan, S.; Jakob, U.

10.1101/756742 — molecular biology — Posted on 2019-09-05

3097 Binding to m6A RNA promotes YTHDF2-mediated phase separation

Wang, J.; Wang, L.; Diao, J.; Shi, Y. G.; Shi, Y.; Ma, H.; Shen, H.

10.1101/757658 — molecular biology — Posted on 2019-09-05

3098 DNA breaks are key contributors to the cost of antibiotic resistance

Balbontin, R.; Gordo, I.

10.1101/756767 — microbiology — Posted on 2019-09-05

3099 Proteomic analysis reveals the recruitment of intrinsically disordered regions to stress granules

Zhu, M.; Kuechler, E. R.; Zhang, J.; Matalon, O.; Dubreuil, B.; Hofmann, A.; Loewen, C. J. R.; Levy, E.; Gsponer, J.; Mayor, T.

10.1101/758599 — cell biology — Posted on 2019-09-05

3100 Molecular Mechanism Underlying Inhibition of Intrinsic ATPase Activity in a Ski2-like RNA Helicase

Absmeier, E.; Santos, K. F.; Wahl, M. C.

10.1101/758169 — biochemistry — Posted on 2019-09-05

3101 Normal human lymph node T follicular helper cells and germinal center B cells accessed via fine needle aspirations

Havenar-Daughton, C.; Newton, I.; Zare, S.; Reiss, S.; Suh, M. J.; Hasteh, F.; Crotty, S.

10.1101/757534 — immunology — Posted on 2019-09-05

3102 Failed apoptosis enhances melanoma cancer cells aggressiveness

Berthenet, K.; Castillo Ferrer, C.; Popgeorgiev, N.; Hernandez-Vargas, H.; Ichim, G.

10.1101/755744 — cancer biology — Posted on 2019-09-05

3103 Rapid phylogenetic analysis of African swine fever virus from metagenomic sequences

Xiong, D.; Zhang, X.; Yu, J.; Wei, H.

10.1101/756726 — bioinformatics — Posted on 2019-09-05

3104 Divergent Cl-and H + pathways underlie transport coupling and gating in CLC exchangers and channels

Accardi, A.; Leisle, L.; Xu, Y.; Fortea, E.; Galpin, J. D.; Vien, M.; Ahern, C. A.; Berneche, S.

10.1101/753954 — biochemistry — Posted on 2019-09-05

3105 Reference glycan structure libraries of primary human cardiomyocytes and pluripotent stem cell-derived cardiomyocytes reveal cell-type and culture stage-specific glycan phenotypes

Ashwood, C.; Waas, M.; Weerasekera, R.; Gundry, R. L.

10.1101/753707 — biochemistry — Posted on 2019-09-05

3106 Biochemical and structural analysis reveals the Neurofibromin (NF1) protein forms a high-affinity dimer

Sherekar, M.; Han, S.-W.; Ghirlando, R.; Messing, S.; Drew, M.; Juneja, P.; O'Neill, H.; Stanley, C.; Bhowmik, D.; Ramanathan, A.; Subramaniam, S.; Nissley, D. V.; Gillette, W.; McCormick, F.; Esposito, D.

10.1101/757856 — biochemistry — Posted on 2019-09-05

3107 Dopamine response gene pathways in dorsal striatum MSNs from a gene expression viewpoint: cAMP-mediated gene networks

Babenko, V.; Galyamina, A.; Rogozin, I.; Smagin, D.; Kudryavtseva, N.

10.1101/757500 — neuroscience — Posted on 2019-09-05

3108 Chromosomal rearrangements and loss of subtelomeric adhesins linked to clade-specific phenotypes in Candida auris

Munoz, J. F.; Welsh, R. M.; Shea, T.; Batra, D.; Gade, L.; Litvintseva, A. P.; Cuomo, C. A.

10.1101/754143 — genomics — Posted on 2019-09-05

3109 Resolving sub-clonal heterogeneity within cell-line growths by single cell sequencing genomic DNA

Velazquez-Villarreal, E. I.; Maheshwari, S.; Sorenson, J.; Fiddes, I. T.; Kumar, V.; Yin, Y.; Webb, M.; Catalanotti, C.; Grigorova, M.; Edwards, P. A.; Carpten, J. D.; Craig, D. W.

10.1101/757211 — genomics — Posted on 2019-09-05

3110 Loss of Cdc13 causes genome instability by deficiency in replication-dependent telomere capping

Langston, R.; Palazzola, D.; Bonnell, E.; Wellinger, R. J.; Weinert, T.

10.1101/757864 — genetics — Posted on 2019-09-05

3111 Structural basis of recruitment of RBM39 to DCAF15 by a sulfonamide molecular glue E7820

Du, X.; Volkov, O. A.; Czerwinski, R.; Tan, H.; Huerta, C.; Morton, E.; Rizzi, J.; Wehn, P.; Xu, R.; Nijhawan, D.; Wallace, E.

10.1101/758409 — biophysics — Posted on 2019-09-05

3112 Multi-epitope Peptide Vaccine Prediction for Candida albicans targeting Pyruvate Kinase Protein; an Immunoinformatics Approach

sati, a. o. m.; abdelmoneim, a. h.; Dawoud, E.; abbas, t.; Abdelrahman, F.; Saad, k.; Abduallah, r.; musrafa, m.; Sidahmed, t.; Elhassan, R.; Hassan, M.

10.1101/758920 — bioinformatics — Posted on 2019-09-05

3113 The feedstock microbiome selectively steers process stability during the anaerobic digestion of waste activated sludge

Law, C. K. Y.; De Henau, R.; De Vrieze, J.

10.1101/757922 — bioengineering — Posted on 2019-09-05

3114 Handedness and Other Variables Associated with Human Brain Asymmetrical Skew

Kong, X.; Postema, M. C.; Carrion Castillo, A.; Pepe, A.; Crivello, F.; Joliot, M.; Mazoyer, B.; Fisher, S. E.; Francks, C.

10.1101/756395 — neuroscience — Posted on 2019-09-05

3115 Example Based Hebbian Learning may be sufficient to support Human Intelligence

Wong, E. C.

10.1101/758375 — neuroscience — Posted on 2019-09-05

3116 A metabolic pathway for bile acid dehydroxylation by the gut microbiome

Funabashi, M.; Grove, T.; Pascal, V.; Varma, Y.; McFadden, M.; Brown, L.; Guo, C.; Medema, M. H.; Almo, S.; Fischbach, M. A.

10.1101/758557 — microbiology — Posted on 2019-09-05

3117 Simplification of ribosomes in bacteria with tiny genomes

Nikolaeva, D. D.; Garushyants, S. K.; Gelfand, M. S.

10.1101/755876 — evolutionary biology — Posted on 2019-09-05

3118 The kinesin-14, Ncd, drives a right-handed, helical motion of antiparallel microtubules around each other

Mitra, A.; Gandhimathi, R.; Ruhnow, F.; Renger, R.; Diez, S.

10.1101/757914 — biophysics — Posted on 2019-09-05

3119 GeneWalk identifies relevant gene functions for a biological context using network representation learning

Ietswaart, R.; Gyori, B. M.; Bachman, J. A.; Sorger, P. K.; Churchman, L. S.

10.1101/755579 — bioinformatics — Posted on 2019-09-05

3120 Membrane composition influences the conformation and function of the dopamine transporter in vivo

Fong, W. M.; Erreger, K.; Choi, S. J.; Reddy, I.; Johnson, C. W.; Mosharov, E. V.; Javitch, J. A.; Galli, A.; Yamamoto, A.

10.1101/755819 — neuroscience — Posted on 2019-09-05

3121 Anthropogenic marine debris and its dynamics across peri-urban and urban mangroves on Penang Island, Malaysia

Chee, S. Y.; Gallagher, J. B.; Yee, J. C.; Carey, D.; Yusup, Y.

10.1101/756106 — ecology — Posted on 2019-09-05

3122 Lgr5 Controls Extracellular Matrix Production By Stem Cells In The Developing Intestine

Fernandez-Vallone, V.; Leprovots, M.; Gerbier, R.; Ribatallada-Soriano, D.; Lefort, A.; Libert, F.; Vassart, G.; Garcia, M.-I.

10.1101/757641 — developmental biology — Posted on 2019-09-05

3123 Profiling cellular diversity in sponges informs animal cell type and nervous system evolution

Musser, J.; Schippers, K. J.; Nickel, M.; Mizzon, G.; Kohn, A. B.; Pape, C.; Hammel, J. U.; Wolf, F.; Liang, C.; Hernandez-Plaza, A.; Achim, K.; Schieber, N.; Francis, W. R.; Vargas R., S.; Kling, S.; Renkert, M.; Feuda, R.; Gaspar, I.; Burkhardt, P.; Bork, P.; Beck, M.; Kreshuk, A.; Wörheide, G.; Huerta-Cepas, J.; Schwab, Y.; Moroz, L. L.; Arendt, D.

10.1101/758276 — developmental biology — Posted on 2019-09-05

3124 Are methylation beta-values simplex distributed?

Nonell, L.; Gonzalez, J. R.

10.1101/753459 — bioinformatics — Posted on 2019-09-05

3125 Splotch: Robust estimation of aligned spatial temporal gene expression data.

Aijo, T.; Maniatis, S.; Vickovic, S.; Kang, K.; Cuevas, M.; Braine, C.; Phatnani, H.; Lundeberg, J.; Bonneau, R.

10.1101/757096 — bioinformatics — Posted on 2019-09-05

3126 C17orf53 defines a novel pathway involved in inter-strand crosslink repair

Wang, C.; Chen, Z.; Su, D.; Tang, M.; Nie, L.; Zhang, H.; Feng, X.; Wang, R.; Shen, X.; Srivastava, M.; McLaughlin, M. E.; Hart, G. T.; Li, L.; Chen, J.

10.1101/758722 — biochemistry — Posted on 2019-09-05

3127 Interleukin 11 expression causes murine inflammatory bowel disease

Lim, W.-W.; Ng, B.; Widjaja, A.; Xie, C.; Su, L.; Ko, N.; Lim, S.-Y.; Kwek, X.-Y.; Lim, S.; Cook, S.; Schafer, S.

10.1101/756098 — pathology — Posted on 2019-09-05

3128 Epitope containing short peptides capture distinct IgG serodynamics that enable DIVA for live-attenuated vaccines

Xue, Q.; Xu, H.; Liu, H.; Pan, J.; Yang, J.; Sun, M.; Chen, Y.; Xu, W.; Ma, H.; Cai, X.

10.1101/756080 — immunology — Posted on 2019-09-05

3129 An integrated Asian human SNV and indel benchmark combining multiple sequencing methods

10.1101/759043 — genomics — Posted on 2019-09-05

3130 Cell-type diversity and regionalized gene expression in the planarian intestine revealed by laser-capture microdissection transcriptome profiling

Forsthoefel, D. J.; Cejda, N. I.; Khan, U. W.; Newmark, P. A.

10.1101/756924 — developmental biology — Posted on 2019-09-05

3131 Decoding the Language of Microbiomes using Word-Embedding Techniques, and Applications in Inflammatory Bowel Disease

Tataru, C. A.; David, M.

10.1101/748152 — bioinformatics — Posted on 2019-09-05

3132 Human in vitro model of material-driven vascular regeneration reveals how cyclic stretch and shear stress differentially modulate inflammation and tissue formation

van Haaften, E. E.; Wissing, T. B.; Kurniawan, N. A.; Smits, A. I. P. M.; Bouten, C. V. C.

10.1101/755157 — bioengineering — Posted on 2019-09-05

3133 A conserved activity for cohesin in bridging DNA molecules

Gutierrez-Escribano, P.; Newton, M.; Llauro, A.; Huber, J.; Tanasie, L.; Davy, J.; Aly, I.; Aramayo, R.; Montoya, A.; Kramer, H.; Stigler, J.; Rueda, D.; Aragon, L.

10.1101/757286 — biochemistry — Posted on 2019-09-05

3134 Comparative analysis of inducible promoters in cyanobacteria

Behle, A.; Saake, P.; Axmann, I. M.

10.1101/757948 — synthetic biology — Posted on 2019-09-05

3135 A cell-free platform based on nisin biosynthesis for discovering novel lanthipeptides and guiding their overproduction in vivo

Liu, R.; Zhang, Y.; Zhai, G.; Fu, S.; Xia, Y.; Hu, B.; Cai, X.; Zhang, Y.; Li, Y.; Deng, Z.; Liu, T.

10.1101/757591 — synthetic biology — Posted on 2019-09-05

3136 The impact of pH on Clostridioides difficile sporulation and physiology

Wetzel, D.; McBride, S. M.

10.1101/759076 — physiology — Posted on 2019-09-05

3137 Dispersal ability predicts evolutionary success among mammalian carnivores

Faurby, S.; Werdelin, L.; Antonelli, A.

10.1101/755207 — paleontology — Posted on 2019-09-05

3138 Genetic perturbations of disease risk genes in mice capture transcriptomic signatures of late-onset Alzheimer’s disease

Pandey, R. S.; Graham, L.; Uyar, A.; Preuss, C.; Howell, G.; Carter, G. W.

10.1101/757161 — neuroscience — Posted on 2019-09-05

3139 Long-term effects of fire on Arctic tundra vegetation in Western Siberia

Heim, R. J.; Bucharova, A.; Rieker, D.; Yurtaev, A.; Kamp, J.; Hoelzel, N.

10.1101/756163 — ecology — Posted on 2019-09-05

3140 Lineage-specific control of convergent cell identity by a Forkhead repressor

Mizeracka, K.; Rogers, J. M.; Shaham, S.; Bulyk, M. L.; Heiman, M. G.

10.1101/758508 — developmental biology — Posted on 2019-09-05

3141 Adaptation Within Embryonic and Neonatal Heart Environment Reveals Alternative Fates for Adult c-Kit+ Cardiac Interstitial Cells

Wang, B. J.; Alvarez, R.; Muliono, A.; Sengphanith, S.; Monsanto, M. M.; Weeks, J.; Sacripanti, R.; Sussman, M. A.

10.1101/758516 — cell biology — Posted on 2019-09-05

3142 GPU Accelerated Adaptive Banded Event Alignment for Rapid Comparative Nanopore Signal Analysis

Gamaarachchi, H.; Lam, C. W.; Jayatilaka, G.; Samarakoon, H.; Simpson, J. T.; Smith, M. A.; Parameswaran, S.

10.1101/756122 — bioinformatics — Posted on 2019-09-05

3143 Mesoscale, Cantilever-Based Indentation Device for Mechanical Characterization of Soft Matter and Biological Tissue

Rubiano, A.; Simmons, C.

10.1101/758342 — bioengineering — Posted on 2019-09-05

3144 The CRY1 tail controls circadian timing by regulating its association with CLOCK:BMAL1

Parico, G. C. G.; Perez, I.; Fribourgh, J. L.; Hernandez, B. N.; Lee, H.-W.; Partch, C. L.

10.1101/758714 — biochemistry — Posted on 2019-09-05

3145 Sex-specific molecular specialization and activity rhythm dependent gene expression changes in honey bee antennae

Jain, R.; Brockmann, A.

10.1101/755728 — animal behavior and cognition — Posted on 2019-09-05

3146 A Monte Carlo method to estimate cell population heterogeneity

Lambert, B.; Gavaghan, D. J.; Tavener, S.

10.1101/758284 — systems biology — Posted on 2019-09-05

3147 Using Bifurcation Theory for Exploring Pain

Verma, P.; Kienle, A.; Flockerzi, D.; Ramkrishna, D.

10.1101/757187 — neuroscience — Posted on 2019-09-05

3148 PTPN2 deletion in T cells promotes anti-tumour immunity and CAR T cell efficacy in solid tumours

Wiede, F.; Lu, K.-H.; Du, X.; Liang, S.; Hochheiser, K.; Dodd, G.; Goh, P.; Kearny, C.; Meyran, D.; Beavis, P.; Henderson, M.; Park, S. L.; Waithman, J.; Zhang, S.; Zhang, Z.-Y.; Oliaro, J.; Gebhardt, T.; Darcy, P. K.; Tiganis, T.

10.1101/757419 — immunology — Posted on 2019-09-05

3149 High Resolution Repli-Seq defines the temporal choreography of initiation, elonga-tion and termination of replication in mammalian cells

Zhao, P. A.; Sasaki, T.; Gilbert, D. M.

10.1101/755629 — genomics — Posted on 2019-09-05

3150 Comprehensive epigenome characterization reveals diverse transcriptional regulation across human vascular endothelial cells

Nakato, R.; Wada, Y.; Nakaki, R.; Nagae, G.; Katou, Y.; Tsutsumi, S.; Nakajima, N.; Fukuhara, H.; Izumi-Taguchi, A.; Kohro, T.; Kanki, Y.; Saito, Y.; Kobayashi, M.; Osato, N.; Tatsuno, K.; Kamio, A.; Hayashi-Takanaka, Y.; Wada, H.; Ohta, S.; Aikawa, M.; Nakajima, H.; Nakamura, M.; McGee, R. C.; Heppner, K. W.; Kawakatsu, T.; Genno, M.; Yanase, H.; Kume, H.; Senbonmatsu, T.; Homma, Y.; Nishimura, S.; Mituyama, T.; Aburatani, H.; Kimura, H.; Shirahige, K.

10.1101/756056 — genomics — Posted on 2019-09-05

3151 The ancestral population size conditioned on the reconstructed phylogenetic tree with occurrence data

Manceau, M.; Gupta, A.; Vaughan, T.; Stadler, T.

10.1101/755561 — evolutionary biology — Posted on 2019-09-05

3152 The role of insect diapause in the divergence of social female castes: Insights from primitively eusocial bumble bee workers

Treanore, E. D.; Kiner, J. M.; Kerner, M. E.; Amsalem, E.

10.1101/758367 — evolutionary biology — Posted on 2019-09-05

3153 Colour preferences of Spotted Wing Drosophila, Drosophila suzukii, under field conditions in various crops

Fahrentrapp, J.; Roosjen, P.; Green, D. R.; Gregory, B.; Panassiti, B.

10.1101/756189 — ecology — Posted on 2019-09-05

3154 Induction of tracheal mesoderm and chondrocyte from pluripotent stem cells in mouse and human.

Kishimoto, K.; Furukawa, K. T.; LuzMadrigal, A.; Yamaoka, A.; Matsuoka, C.; Habu, M.; Alev, C.; Zorn, A.; Morimoto, M.

10.1101/758235 — developmental biology — Posted on 2019-09-05

3155 Microrheology for Hi-C Data Reveals the Spectrum of the Dynamic 3D Genome Organization

Shinkai, S.; Sugawara, T.; Miura, H.; Hiratani, I.; Onami, S.

10.1101/756965 — biophysics — Posted on 2019-09-05

3156 Hyperspectral super-resolution imaging with far-red emitting fluorophores using a thin-film tunable filter

Vissa, A.; Giuliani, M.; Kim, P. K.; Yip, C. M.

10.1101/756023 — biophysics — Posted on 2019-09-05

3157 OmicsOne: Associate Omics Data with Phenotypes in One-Click

Hu, Y.; Ao, M.; Zhang, H.

10.1101/756544 — bioinformatics — Posted on 2019-09-05

3158 Multiplexed Non-invasive in vivo Imaging to Assess Metabolism and Receptor Engagement in Tumor Xenografts

Rudkouskaya, A.; Sinsuebphon, N.; Ochoa, M.; Mazurkiewicz, J. E.; Intes, X.; Barroso, M.

10.1101/758383 — bioengineering — Posted on 2019-09-05

3159 Structural basis for osmotic regulation of the DNA binding properties of H-NS proteins

Qin, L.; Ben Bdira, F.; G. J. Sterckx, Y.; N. Volkov, A.; Vreede, J.; Giachin, G.; van Schaik, P.; Ubbink, M.; T. Dame, R.

10.1101/757732 — biochemistry — Posted on 2019-09-05

3160 Hierarchical structure is employed by humans during visual motion perception

Bill, J.; Pailian, H.; Gershman, S. J.; Drugowitsch, J.

10.1101/758573 — neuroscience — Posted on 2019-09-05

3161 Phospholipase D Transduces Force to TREK-1 Channels in a Biological Membrane

Petersen, E. N.; Gudheti, M.; Pavel, M. A.; Murphy, K. R.; Ja, W. W.; Jorgensen, E. M.; Hansen, S. B.

10.1101/758896 — neuroscience — Posted on 2019-09-05

3162 In silico hippocampal modeling for multi-target pharmacotherapy in schizophrenia

Sherif, M.; Neymotin, S. A.; Lytton, W. W.

10.1101/758466 — neuroscience — Posted on 2019-09-05

3163 Precise annotation of tick mitochondrial genomes reveals multiple STR variation and one transposon-like element

Chen, Z.; Xu, X.; Liu, J.; Gao, S.

10.1101/753541 — molecular biology — Posted on 2019-09-05

3164 Supression of Perforin-like Protein pores inhibit Plasmodium multistage-growth, transmission and erythrocyte senescence

Garg, S.; Shivappagowdar, A.; Hada, R. S.; Ayana, R.; Bathula, C.; Sen, S.; Kalia, I.; Pati, S.; Singh, A. P.; singh, s.

10.1101/756197 — molecular biology — Posted on 2019-09-05

3165 Kinetics of the immune response to Eimeria maxima in relatively resistant and susceptible chicken lines

Bremner, A.; Kim, S.; Morris, K.; Nolan, M. J.; Borowska, D.; Wu, Z.; Tomley, F.; Blake, D. P.; Hawken, R.; Kaiser, P.; Vervelde, L.

10.1101/757567 — immunology — Posted on 2019-09-05

3166 Multi-trait genome-wide analyses of the brain imaging phenotypes in UK Biobank

Wu, C.

10.1101/758326 — genetics — Posted on 2019-09-05

3167 The TERB1-TERB2-MAJIN complex of mouse meiotic telomeres dates back to the common ancestor of metazoans

da Cruz, I.; Brochier, C.; Benavente, R.

10.1101/755512 — evolutionary biology — Posted on 2019-09-05

3168 Whole Genome Tree of Life: Deep Burst of Organism Diversity

Choi, J.; Kim, S.-H.

10.1101/756155 — evolutionary biology — Posted on 2019-09-05

3169 Full-annual demography and seasonal cycles in a resident vertebrate

Guimaraes, M.; Correa, D.; Gaisara, M.; Kery, M.

10.1101/754929 — ecology — Posted on 2019-09-05

3170 Single cell transcriptomics reveals a signaling roadmap coordinating endoderm and mesoderm lineage diversification during foregut organogenesis

Han, L.; Koike, H.; Chaturvedi, P.; Kishimoto, K.; Iwasawa, K.; Giesbrecht, K.; Witcher, P. C.; Eicher, A.; Nasr, T.; Haines, L.; Shannon, J. M.; Morimoto, M.; Wells, J. M.; Takebe, T.; Zorn, A.

10.1101/756825 — developmental biology — Posted on 2019-09-05

3171 Unified inference of missense variant effects and gene constraints in the human genome

Huang, Y.-F.

10.1101/757468 — bioinformatics — Posted on 2019-09-05

3172 A ‘comb’ algorithm for accurate detection of calcium transients and action potentials in regularly activating cardiac preparations

Tomek, J.

10.1101/757294 — bioinformatics — Posted on 2019-09-05

3173 Temperature fluctuations between years predict temporal allele frequency variation in a hybrid ant population

Martin-Roy, R.; Kulmuni, J.

10.1101/755496 — genetics — Posted on 2019-09-05

3174 An insight to HTLV-1-associated myelopathy/tropical spastic paraparesis (HAM/TSP) pathogenesis; evidence from high-throughput data integration and meta-analysis

Mozhgani, S.-H.; Piran, M.; Zarei Ghobadi, M.; Jafari, M.; Mokhtari-Azad, T.; Jazayeri, S.-M.; Teymoori-Rad, M.; Valizadeh, N.; Farajifard, H.; Mirzaie, M.; Khamse, A.; Rafatpanah, H.; Rezaee, S.-A.; Norouzi, M.

10.1101/754697 — systems biology — Posted on 2019-09-05

3175 The ALBA RNA-binding proteins function redundantly to promote growth and flowering in Arabidopsis.

Wang, N.; Jalajakumari, M.; Miller, T.; Asadi, M.; Millar, A. A.

10.1101/758946 — plant biology — Posted on 2019-09-05

3176 Conformation-dependent influences of hydrophobic amino acids in two in-register parallel β-sheet amyloids, an α-synuclein amyloid and a local structural model of PrPSc

Otaki, H.; Taguchi, Y.; Nishida, N.

10.1101/758938 — molecular biology — Posted on 2019-09-05

3177 Inhibition of tRNA Synthetases Induces Persistence in Chlamydia

Hatch, N. D.; Ouellette, S. P.

10.1101/759084 — microbiology — Posted on 2019-09-05

3178 Chitosan biosynthesis and virulence in the human fungal pathogen Cryptococcus gattii

Lam, W. C.; Upadhya, R.; Specht, C.; Ragsdale, A. E.; Hole, C. R.; Levitz, S. M.; Lodge, J. K.

10.1101/759050 — microbiology — Posted on 2019-09-05

3179 Potential of genomic selection for improvement of resistance to Ostreid Herpes virus in Pacific oyster (Crassostrea gigas)

Gutierrez, A. P.; Symonds, J.; King, N.; Steiner, K.; Bean, T.; Houston, R.

10.1101/754473 — genomics — Posted on 2019-09-05

3180 Differential gene expression and functional pathway enrichment in fetal colon cell line CCD 841 CoN (CRL-1790) transfected with miR-mimics miR-18b, miR-142-3p, miR-155, and miR-890.

Robinson, J.

10.1101/747931 — molecular biology — Posted on 2019-09-05

3181 Human Oocytes Harbouring Damaged DNA Can Complete Meiosis-I

Remillard-Labrosse, G.; Dean, N.; Allais, A.; Mihajlovic, A. I.; Jin, S. G.; Son, W.-Y.; Chung, J.-T.; Pansera, M.; Henderson, S.; Mahfoudh, A.; Steiner, N.; Agapitou, K.; Marangos, P.; Buckett, W.; Ruiter-Ligeti, J.; FitzHarris, G.

10.1101/752113 — developmental biology — Posted on 2019-09-05

3182 Capture at the single cell level of metabolic modules distinguishing aggressive and indolent glioblastoma cells

Saurty, M. S.; Bellenger, L.; El-Habr, E. A.; Delaunay, V.; Chneiweiss, H.; Antoniewski, C.; Morvan-Dubois, G.; Junier, M.-P.

10.1101/755611 — cancer biology — Posted on 2019-09-05

3183 New additions to the CRISPR toolbox: CRISPR-CLONInG and CRISPR-CLIP

Shola, D. T. N.

10.1101/746826 — molecular biology — Posted on 2019-09-05

3184 Four high-quality draft genome assemblies of the marine heterotrophic nanoflagellate Cafeteria roenbergensis

Hackl, T.; Martin, R.; Barenhoff, K.; Duponchel, S.; Heider, D.; Fischer, M. G.

10.1101/751586 — genomics — Posted on 2019-09-05

3185 Transposable elements that cause dysgenesis also contribute to postzygotic isolation in the Drosophila virilis clade

Castillo, D. M.; Moyle, L. C.

10.1101/753814 — evolutionary biology — Posted on 2019-09-05

3186 Rapid Reconstruction of Time-varying Gene Regulatory Networks with Limited Main Memory

Pyne, S.; Anand, A.

10.1101/755249 — bioinformatics — Posted on 2019-09-05

3187 State transitions of a developmental oscillator

Meeuse, M. W. M.; Hauser, Y. P.; Hendriks, G.-J.; Eglinger, J.; Bogaarts, G.; Tsiairis, C.; Grosshans, H.

10.1101/755421 — systems biology — Posted on 2019-09-05

3188 Nested tandem duplications of the gene Melanoma antigen recognized by T-cells (Mlana) underlie the sexual dimorphism locus in domestic pigeons

Krishnan, S.

10.1101/754986 — genetics — Posted on 2019-09-05

3189 MLDSP-GUI: An alignment-free standalone tool with an interactive graphical user interface for DNA sequence comparison and analysis

Randhawa, G. S.; Hill, K. A.; Kari, L.

10.1101/745406 — bioinformatics — Posted on 2019-09-05

3190 Toward a dynamic threshold for quality-score distortion in reference-based alignment

Hernandez-Lopez, A.

10.1101/754614 — bioinformatics — Posted on 2019-09-05

3191 Engineering recombination between diverged yeast species reveals genetic incompatibilities

Bozdag, G. O.; Ono, J.; Denton, J. A.; Karakoc, E.; Hunter, N.; Leu, J.-Y.; Greig, D.

10.1101/755165 — evolutionary biology — Posted on 2019-09-05

3192 Loss of ELK1 has differential effects on age-dependent organ fibrosis and integrin expression

Cairns, J. T.; Habgood, A.; Edwards-Pritchard, R.; Wilkinson, C.; Stewart, I. D.; Leslie, J.; Blaxall, B. C.; Susztak, K.; Alberti, S.; Nordheim, A.; Oakley, F.; Jenkins, R. G.; Tatler, A. L.

10.1101/755694 — pathology — Posted on 2019-09-05

3193 A bestiary of genetic mouse lines and related tools for inducible and reversible intersectional misexpression

Ahmadzadeh, E.; Singh, A.; Bayin, N. S.; Qu, X.; Madisen, L.; Stephen, D.; Zeng, H.; Joyner, A. L.; Rosello-Diez, A.

10.1101/754192 — molecular biology — Posted on 2019-09-05

3194 Sawfish, Read in Tooth and Saw: rostral teeth as endogenous chemical records of movement and life-history in a critically endangered species

Hegg, J. C.; Breanna, G. L.; Fisher, C. M.

10.1101/753293 — ecology — Posted on 2019-09-05

3195 A framework for quantifying deviations from dynamic equilibrium theory

Kalyuzhny, M.; Flather, C. H.; Shnerb, N. M.; Kadmon, R.

10.1101/755645 — ecology — Posted on 2019-09-05

3196 Sensitivity and robustness of comorbidity network analysis

Brunson, J. C.; Agresta, T. P.; Laubenbacher, R. C.

10.1101/752964 — bioinformatics — Posted on 2019-09-05

3197 Omic-Sig: Utilizing Omics Data to Explore and Visualize Kinase-Substrate Interactions

Lih, T.-S. M.; Clark, D. J.; Zhang, H.

10.1101/746123 — bioinformatics — Posted on 2019-09-05

3198 Temporal scaling in developmental gene networks by epigenetic timing control

Nguyen, P. H. B.; Pease, N. A.; Irwin, B.; Ng, K. K. N.; Kueh, H. Y.

10.1101/752170 — systems biology — Posted on 2019-09-05

3199 NASQAR: A web-based platform for High-throughput sequencing data analysis and visualization

Yousif, A.; Drou, N.; Rowe, J.; Khalfan, M.; Gunsalus, K.

10.1101/709980 — bioinformatics — Posted on 2019-09-04

3200 Life history recorded in the vagino-cervical microbiome

Jie, Z.; Chen, C.; Hao, L.; Li, F.; Song, L.; Zhang, X.; Zhu, J.; Tian, L.; Tong, X.; Cai, K.; Ju, Y.; Yu, X.; Li, Y.; Zhou, H.; Lu, H.; Qiu, X.; Li, Q.; Liao, Y.; Zhou, D.; Lian, H.; Zuo, Y.; Chen, X.; Rao, W.; Ren, Y.; Wang, Y.; Zi, J.; Wang, R.; Liu, N.; Wu, J.; Zhang, W.; Liu, X.; Yang, Z.; Liu, W.; Xiao, L.; Hou, Y.; Xu, X.; Yang, H.; Wang, J.; Kristiansen, K.; Jia, H.

10.1101/533588 — microbiology — Posted on 2019-09-04

3201 Deep Learning-Based Point-Scanning Super-Resolution Imaging

Fang, L.; Monroe, F.; Novak, S. W.; Kirk, L.; Schiavon, C. R.; Yu, S. B.; Zhang, T.; Wu, M.; Kastner, K.; Kubota, Y.; Zhang, Z.; Pekkurnaz, G.; Mendenhall, J.; Harris, K.; Howard, J.; Manor, U.

10.1101/740548 — bioinformatics — Posted on 2019-09-04

3202 Generating high-quality libraries for DIA-MS with empirically-corrected peptide predictions

Searle, B. C.; Swearingen, K. E.; Barnes, C. A.; Schmidt, T.; Gessulat, S.; Kuster, B.; Wilhelm, M.

10.1101/682245 — systems biology — Posted on 2019-09-04

3203 Proteinase-Activated Receptor 4 (PAR4) Activation Triggers Cell Membrane Blebbing through RhoA and β-arrestin

Vanderboor, C. M.; Thibeault, P. E.; Nixon, K. C.; Gros, R.; Kramer, J. M.; Ramachandran, R.

10.1101/746677 — pharmacology and toxicology — Posted on 2019-09-04

3204 Molecular Basis for G-protein-Coupled Receptor (GPCR) Activation and Biased Signalling at the Platelet Thrombin Receptor Proteinase Activated Receptor-4 (PAR4)

Thibeault, P.; LeSarge, J. C.; Arends, D.; Fernandes, M.; Chidiac, P.; Stathopulos, P.; Luyt, L. G.; Ramachandran, R.

10.1101/746693 — pharmacology and toxicology — Posted on 2019-09-04

3205 Selective enhancement of object representations through multisensory integration

Tovar, D. A.; Murray, M. M.; Wallace, M. T.

10.1101/740555 — neuroscience — Posted on 2019-09-04

3206 Unsuspected involvement of spinal cord in Alzheimer Disease.

Lorenzi, R.; Palesi, F.; Castellazzi, G.; Vitali, P.; Anzalone, N.; Bernini, S.; Sinforiani, E.; Micieli, G.; Costa, A.; D'Angelo, E. U.; Gandini Wheeler-Kingshott, C. A. M.

10.1101/673350 — neuroscience — Posted on 2019-09-04

3207 Presence of a D2 receptor truncated protein in the brain of the D2 receptor functional knockout mouse, revisiting its molecular and neurochemical features

Sanchez, N.; Olivares-Costa, M.; Gonzalez, M. P.; Escobar, A. P.; Meza, R.; Munita, R.; Herrera-Rojas, M.; Andres, M. E.

10.1101/757609 — neuroscience — Posted on 2019-09-04

3208 The ER membrane protein complex is required to ensure correct topology and stable expression of flavivirus polyproteins

Ngo, A. M.; Shurtleff, M. J.; Popova, K. D.; Kulsuptrakul, J.; Weissman, J. S.; Puschnik, A. S.

10.1101/572602 — microbiology — Posted on 2019-09-04

3209 Transcriptome of the parasitic flatworm Schistosoma mansoni during intra-mammalian development

Berriman, M.; Wangwiwatsin, A.; Protasio, A. V.; Wilson, S.; Owusu, C.; Holroyd, N.; Sanders, M.; Keane, J.; Doenhoff, M.; Rinaldi, G.

10.1101/757633 — microbiology — Posted on 2019-09-04

3210 A widespread toxin-antitoxin system exploiting growth control via alarmone signalling

Jimmy, S.; Saha, C. K.; Stavropoulos, C. G.; Oliveira, S. R. A.; Kurata, T.; Koh, A.; Cepauskas, A.; Takada, H.; Tenson, T.; Strahl, H.; Garcia-Pino, A.; Hauryliuk, V.; Atkinson, G. C.

10.1101/575399 — microbiology — Posted on 2019-09-04

3211 Single cell transcriptome analysis reveals an essential role for Gata2b in hematopoietic lineage decisions in zebrafish

Gioacchino, E.; Koyunlar, C.; de Looper, H.; de Jong, M.; Dobrzycki, T.; Hoogenboezem, R.; Zink, J.; Bosch, D.; van Strien, P.; van Royen, M. E.; French, P.; Bindels, E.; Monteiro, R.; Gussinklo, K. J.; Touw, I. P.; de Pater, E.

10.1101/753178 — immunology — Posted on 2019-09-04

3212 The enteric nervous system of the human and mouse colon at a single-cell resolution

Drokhlyansky, E.; Smillie, C. S.; Van Wittenberghe, N.; Ericsson, M.; Griffin, G. K.; Dionne, D.; Cuoco, M. S.; Goder-Reiser, M. N.; Sharova, T.; Aguirre, A. J.; Boland, G. M.; Graham, D.; Rozenblatt-Rosen, O.; Xavier, R. J.; Regev, A.

10.1101/746743 — genomics — Posted on 2019-09-04

3213 The influence of feeding behaviour and temperature on the capacity of mosquitoes to transmit malaria

Suh, E.; Grossman, M. K.; Waite, J. L.; Dennington, N. L.; Sherrard-Smith, E.; Churcher, T. S.; Thomas, M. B.

10.1101/604249 — ecology — Posted on 2019-09-04

3214 Single-cell transcriptomic reveals temporal dynamics of critical regulators of germ cell fate during mouse sex determination

Mayere, C.; Neirijnck, Y.; Sararols, P.; Stevant, I.; Kühne, F.; Chassot, A.-A.; Chaboissier, M.-C.; Dermitzakis, E.; Nef, S.

10.1101/747279 — developmental biology — Posted on 2019-09-04

3215 PD-L1 expression in 522 selected sarcomas with subset analysis of recurrent or metastatic matched samples and association with tumour-infiltrating lymphocytes

Vargas, A. C.; Maclean, F. M.; Sioson, L.; Tran, D.; Bonar, F.; Mahar, A.; Cheah, A. L.; Russell, P.; Peter Grimison, P. G.; Louise Richardson, L. R.; Gill, A. J.

10.1101/757625 — cancer biology — Posted on 2019-09-04

3216 The key miRNAs for metastasis and survival of colon adenocarcinoma

yu, M.; Li, W.; Zhang, C.; Xie, F.; He, C.

10.1101/757617 — bioinformatics — Posted on 2019-09-04

3217 DeepPoseKit, a software toolkit for fast and robust animal pose estimation using deep learning

Graving, J. M.; Chae, D.; Naik, H.; Li, L.; Koger, B.; Costelloe, B. R.; Couzin, I. D.

10.1101/620245 — animal behavior and cognition — Posted on 2019-09-04

3218 Transcriptome-guided parsimonious flux analysis improves predictions with metabolic networks in complex environments

Jenior, M. L.; Moutinho, T.; Papin, J. A.

10.1101/637124 — systems biology — Posted on 2019-09-04

3219 Introns Control Intrinsic Noise

Sands, B.; Yun, S. R.; Mendenhall, A. R.

10.1101/746263 — systems biology — Posted on 2019-09-04

3220 Knocking out non-muscle myosin II in retinal ganglion cells promotes long-distance optic nerve regeneration

Wang, X.-W.; Yang, S.-G.; Zhang, C.; Ma, J.-J.; Zhang, Y.; Yang, B.-B.; Weng, Y.-L.; Ming, G.-L.; Anish, K. R.; XXX, S.; Zhou, F.-Q.

10.1101/625707 — neuroscience — Posted on 2019-09-04

3221 Resistance and Tolerance to Root Herbivory in Maize were Mediated by Domestication, Spread, and Breeding

Fontes-Puebla, A. A.; Bernal, J. S.

10.1101/751982 — ecology — Posted on 2019-09-04

3222 Agency plans are inadequate to conserve US endangered species under climate change

Delach, A.; Caldas, A.; Edson, K.; Krehbiel, R.; Murray, S.; Theoharides, K.; Vorhees, L.; Malcom, J. W.; Salvo, M.; Miller, J. R. B.

10.1101/647396 — ecology — Posted on 2019-09-04

3223 Glucocorticoids regulate cancer cell dormancy

Prekovic, S.; Schuurman, K.; Gonzalez Manjon, A.; Buijs, M.; Mayayo Peralta, I.; Wellenstein, M. D.; Yavuz, S.; Barrera, A.; Monkhorst, K.; Huber, A.; Morris, B.; Lieftink, C.; Silva, J.; Györffy, B.; Hoekman, L.; van den Broek, B.; Teunissen, H.; Reddy, T. E.; Faller, W.; Beijersbergen, R.; Jonkers, J.; Altelaar, M.; de Visser, K. E.; de Wit, E.; Medema, R.; Zwart, W.

10.1101/750406 — cancer biology — Posted on 2019-09-04

3224 Blood-spinal cord barrier leakage is independent of motor neuron pathology in ALS

Waters, S.; Dieriks, B. V.; Swanson, M. E.; Zhang, Y.; Grimsey, N. L.; Murray, H. C.; Turner, C.; Waldvogel, H. J.; Faull, R. L.; An, J.; Bowser, R.; Curtis, M. A.; Dragunow, M.; Scotter, E. L.

10.1101/704270 — neuroscience — Posted on 2019-09-04

3225 An alternative AUG codon in segment 5 of the 2009 pandemic influenza A virus is a swine-derived virulence motif

Wise, H. M.; Gaunt, E.; Ping, J.; Holzer, B.; Jasim, S.; Lycett, S. J.; Murphy, L.; Livesey, A.; Brown, R.; Smith, N.; Morgan, S.; Clark, B.; Kudryavtseva, K.; Beard, P. M.; Nguyen-Van-Tam, J.; Salguero, F. J.; Tchilian, E.; Dutia, B. M.; Brown, E. G.; Digard, P.

10.1101/738427 — microbiology — Posted on 2019-09-04

3226 Insights into ancestry and adaptive evolution of the Mycobacterium tuberculosis complex from analysis of the emerging pathogen Mycobacterium riyadhense

Guan, Q.; Garbati, M.; Mfarrej, S.; AlMutairi, T.; Smyth, A.; Singh, A.; Fagbo, S.; Browne, J.; urRahman, M. A.; Alruwaili, A.; Hoosen, A.; Nakajima, C.; Suzuki, Y.; Bhatt, A.; Gordon, S.; AlAsmari, F.; Pain, A.

10.1101/728923 — evolutionary biology — Posted on 2019-09-04

3227 Plant eco-evolution weakens mutualistic interaction with declining pollinator populations

Weinbach, A.; Loeuille, N.; Rohr, R. P.

10.1101/570580 — ecology — Posted on 2019-09-04

3228 Phenotypic and functional characterization of corneal endothelial cells during in vitro expansion

Frausto, R. F.; Swamy, V. S.; Peh, G. S.; Boere, P. M.; Hanser, E. M.; Chung, D. D.; George, B. L.; Morselli, M.; Kao, L.; Azimov, R.; Wu, J.; Pellegrini, M.; Kurtz, I.; Mehta, J. S.; Aldave, A. J.

10.1101/717405 — cell biology — Posted on 2019-09-04

3229 Computational design of a protein family that adopts two well-defined and structurally divergent de novo folds

Wei, K. Y.; Moschidi, D.; Bick, M. J.; Nerli, S.; McShan, A. C.; Carter, L. P.; Huang, P.-S.; Fletcher, D. A.; Sgourakis, N. G.; Boyken, S. E.; Baker, D.

10.1101/597161 — biochemistry — Posted on 2019-09-04

3230 Influence of genetic polymorphism on transcriptional enhancer activity in the malaria vector Anopheles coluzzii

Nardini, L.; Holm, I.; Pain, A.; Bischoff, E.; Gohl, D.; Zongo, S.; Guelbeogo, W. M.; Sagnon, N.; Vernick, K. D.; Riehle, M. M.

10.1101/659144 — genetics — Posted on 2019-09-04

3231 MetaNovo: a probabilistic approach to peptide and polymorphism discovery in complex mass spectrometry datasets

Potgieter, M. G.; Nel, A. J.; Fortuin, S.; Garnett, S.; Wendoh, J. M.; Tabb, D. L.; Mulder, N.; Blackburn, J.

10.1101/605550 — bioinformatics — Posted on 2019-09-04

3232 Hydrogen exchange of chemoreceptors in functional complexes suggests protein stabilization mediates long-range allosteric coupling

Li, X.; Eyles, S. J.; Thompson, L. K.

10.1101/676783 — biochemistry — Posted on 2019-09-04

3233 Parcellation of the neonatal cortex using Surface-based Melbourne Children’s Regional Infant Brain atlases (M-CRIB-S)

Adamson, C.; Alexander, B.; Ball, G.; Beare, R.; Chong, J.; Spittle, A.; Doyle, L.; Anderson, P.; Seal, M.; Thompson, D.

10.1101/544304 — neuroscience — Posted on 2019-09-04

3234 PESCA: A scalable platform for the development of cell-type-specific viral drivers

Hrvatin, S.; Tzeng, C. P.; Nagy, M. A.; Stroud, H.; Koutsioumpa, C.; Wilcox, O. F.; Assad, E. G.; Green, J.; Harvey, C. D.; Griffith, E. C.; Greenberg, M. E.

10.1101/570895 — neuroscience — Posted on 2019-09-04

3235 The conflict between adaptation and dispersal for maintaining biodiversity in changing environments

Thompson, P. L.; Fronhofer, E. A.

10.1101/490722 — ecology — Posted on 2019-09-04

3236 Conformational Transition Pathways in Major Facilitator Superfamily Transporters

Ogden, D.; Immadisetty, K.; Moradi, M.

10.1101/708289 — biophysics — Posted on 2019-09-04

3237 Systematic discovery of endogenous human ribonucleoprotein complexes

Mallam, A. L.; Sae-Lee, W.; Schaub, J. M.; Tu, F.; Battenhouse, A.; Jang, Y. J.; Kim, J.; Wallingford, J. B.; Finkelstein, I. J.; Marcotte, E. M.; Drew, K.

10.1101/480061 — systems biology — Posted on 2019-09-04

3238 Impaired reliability and precision of spiking in adults but not juveniles in a mouse model of Fragile X Syndrome

Dwivedi, D.; Chattarji, S.; Bhalla, U.

10.1101/503714 — neuroscience — Posted on 2019-09-04

3239 Probabilities of tree topologies with temporal constraints and diversification shifts

Didier, G.

10.1101/376756 — evolutionary biology — Posted on 2019-09-04

3240 Cancer cell CCR2 orchestrates suppression of the adaptive immune response

Fein, M. R.; He, X. Y.; Almeida, A. S.; Bruzas, E.; Pommier, A.; Yan, R.; Eberhardt, A.; Fearon, D. T.; Van Aelst, L.; Wilkinson, J. E.; dos Santos, C. O.; Egeblad, M.

10.1101/390187 — cancer biology — Posted on 2019-09-04

3241 Computational exploration of molecular receptive fields in the olfactory bulb reveals a glomerulus-centric chemical map.

Soelter, J.; Schumacher, J.; Spors, H.; Schmuker, M.

10.1101/489666 — neuroscience — Posted on 2019-09-04

3242 Leveraging mouse chromatin data for heritabilityenrichment informs common disease architecture andreveals cortical layer contributions to schizophrenia

Hook, P. W.; McCallion, A. S.

10.1101/427484 — genetics — Posted on 2019-09-04

3243 Evolution of phenotypic plasticity in response to ethanol between sister species with different ecological histories (Drosophila melanogaster and D. simulans)

Signor, S.

10.1101/386334 — evolutionary biology — Posted on 2019-09-04

3244 Effects of Ocean Climate on Spatiotemporal Variation in Sea Urchin Settlement and Recruitment

Okamoto, D. K.; Reed, D. C.; Schroeter, S. C.

10.1101/387282 — ecology — Posted on 2019-09-04

3245 NIHBA: A Network Interdiction Approach with Hybrid Benders Algorithm for Strain Design

Jiang, S.; Wang, Y.; Kaiser, M.; Krasnogor, N.

10.1101/752923 — bioengineering — Posted on 2019-09-04

3246 Predicting Adverse Drug-Drug Interactions with Neural Embedding of Semantic Predications

Burkhardt, H. A.; Subramanian, D.; Mower, J.; Cohen, T.

10.1101/752022 — bioinformatics — Posted on 2019-09-04

3247 Contrasting approaches to genome-wide association studies impact the detection of resistance mechanisms in Staphylococcus aureus

Wheeler, N. E.; Reuter, S.; Chewapreecha, C.; Lees, J. A.; Blane, B.; Horner, C.; Enoch, D.; Brown, N.; Török, M. E.; Aanensen, D. M.; Parkhill, J.; Peacock, S. J.

10.1101/758144 — bioinformatics — Posted on 2019-09-04

3248 Single mutation at a highly conserved region of chloramphenicol acetyltransferase enables thermophilic isobutyl acetate production directly from cellulose by Clostridium thermocellum

Seo, H.; Lee, J.-W.; Garcia, S.; Trinh, C. T.

10.1101/756916 — synthetic biology — Posted on 2019-09-04

3249 Localized calcium accumulations prime synapses for phagocyte removal in cortical neuroinflammation

Jafari, M.; Schumacher, A.-M.; Snaidero, N.; Neziraj, T.; Ullrich Gavilanes, E. M.; Jürgens, T.; Florez Weidinger, J. D.; Schmidt, S. S.; Beltran, E.; Hagan, N.; Woodworth, L.; Ofengeim, D.; Gans, J.; Wolf, F.; Kreutzfeldt, M.; Portugues, R.; Merkler, D.; Misgeld, T.; Kerschensteiner, M.

10.1101/758193 — neuroscience — Posted on 2019-09-04

3250 The nasopalatine ducts of the mouse conserve a functional role in pheromone signaling

Levy, D. R.; Sofer, Y.; Brumfeld, V.; Zilkha, N.; Kimchi, T.

10.1101/757930 — neuroscience — Posted on 2019-09-04

3251 Integration of high-content fluorescence imaging into the metabolic flux assay reveals insights into mitochondrial properties and functions

Little, A. C.; Kovalenko, I.; Goo, L. E.; Hong, H. S.; Kerk, S. A.; Yates, J. A.; Purohit, V.; Lombard, D. B.; Merajver, S. D.; Lyssiotis, C. A.

10.1101/758110 — molecular biology — Posted on 2019-09-04

3252 Trehalose recycling promotes energy-efficient mycomembrane reorganization in nutrient-limited mycobacteria

Pohane, A. A.; Carr, C. R.; Garhyan, J.; Swarts, B. M.; Siegrist, M. S.

10.1101/758177 — microbiology — Posted on 2019-09-04

3253 Multiple activities of the MatP protein are involved in post-replicative pairing of sister chromosomes in Escherichia coli

Crozat, E.; Tardin, C.; Salhi, M.; Rousseau, P.; Lablaine, A.; Bertoni, T.; Holcman, D.; Sclavi, B.; Cicuta, P.; Cornet, F.

10.1101/755397 — microbiology — Posted on 2019-09-04

3254 Dynamic oligopeptide acquisition by the RagAB transporter from Porphyromonas gingivalis

Madej, M.; White, J.; Nowakowska, Z.; Rawson, S.; Scavenius, C.; Enghild, J.; Bereta, G.; Pothula, K.; Kleinekathoefer, U.; Basle, A.; Ranson, N.; Potempa, J.; van den Berg, B.

10.1101/755678 — microbiology — Posted on 2019-09-04

3255 The microbiome as a biosensor: functional profiles elucidate hidden stress in hosts

Zolti, A.; Green, S. J.; Sela, N.; Hadar, Y.; Minz, D.

10.1101/752261 — microbiology — Posted on 2019-09-04

3256 Protein ubiquitylation is essential for the schizont to merozoite transition in Plasmodium falciparum blood-stage development

Wu, Y.; Encheva, V.; Green, J. L.; Lasonder, E.; Prommaban, A.; Kunzelmann, S.; Christodoulou, E.; Grainger, M.; Truongvan, N.; Bothe, S.; Sharma, V.; Song, W.; Pinzuti, I.; Uthaipibull, C.; Srichairatanakool, S.; Barault, V.; Langsley, G.; Schindelin, H.; Stieglitz, B.; Snijders, A. P.; Holder, A. A.

10.1101/755439 — microbiology — Posted on 2019-09-04

3257 Meta-16S rRNA gene phylogenetic reconstruction reveals astonishing diversity of the cosmopolitan myxobacteria

Liu, Y.; Yao, Q.; Zhu, H.

10.1101/754119 — microbiology — Posted on 2019-09-04

3258 ArdC protein overpasses the recipient hsdRMS restriction system broadening conjugation host range

Gonzalez-Montes, L.; del Campo, I.; de la Cruz, F.; Moncalian, G.

10.1101/756429 — microbiology — Posted on 2019-09-04

3259 Allele Specific Expression in Human - Genomic Makeup and Phenotypic Implications

Wainer-Katsir, K.; Linial, M.

10.1101/757997 — genomics — Posted on 2019-09-04

3260 Orchestrated delivery of Legionella effectors by the Icm/Dot secretion system

Allombert, J.; Jaboulay, C.; Michard, C.; Andrea, C.; Charpentier, X.; Vianney, A.; Doublet, P.

10.1101/754762 — microbiology — Posted on 2019-09-04

3261 Disruption to NKCC1 impairs the response of myelinating Schwann cells to neuronal activity and leads to severe peripheral nerve pathology

Kegel, L.; Marshall-Phelps, K. L.; Baraban, M.; Almeida, R. G.; Rubio-Brotons, M.; Klingseisen, A.; Benito-Kwiecinski, S.; Early, J. J.; Bin, J.; Livesey, M. R.; Poole, R. J.; Lyons, D. A.

10.1101/757831 — neuroscience — Posted on 2019-09-04

3262 Stimjim: open source hardware for precise electrical stimulation

Cermak, N.; Wilson, M. A.; Schiller, J.; Newman, J. P.

10.1101/757716 — neuroscience — Posted on 2019-09-04

3263 Effects of enriched housing on the neuronal morphology of mice that lack zinc transporter 3 (ZnT3) and vesicular zinc

McAllister, B. B.; Thackray, S.; Garcia de la Orta, B. K.; Gosse, E.; Tak, P.; Chipak, C.; Rehal, S.; Valverde Rascon, A.; Dyck, R. H.

10.1101/754747 — neuroscience — Posted on 2019-09-04

3264 Induction of Activity Synchronization among Primed Hippocampal Neurons out of Random Dynamics is Key for Trace Memory Formation and Retrieval

Zhou, Y.; Qiu, L.; Wang, H.; Chen, X.

10.1101/757229 — neuroscience — Posted on 2019-09-04

3265 Serotonin receptor 4 in mature excitatory hippocampal neurons modulates mood and anxiety

Karayol, R.; Medrihan, L.; Warner-Schmidt, J. L.; Rao, M. N.; Holzner, E. B.; Greengard, P.; Heintz, N.; Schmidt, E. F.

10.1101/758151 — neuroscience — Posted on 2019-09-04

3266 Target Gene Notebook: Connecting genetics and drug discovery

Reeve, M. P.; Kirby, A.; Wierzbowski, J.; Daly, M. J.; Hutz, J.

10.1101/757690 — genomics — Posted on 2019-09-04

3267 Agrobacterium-mediated floral-dip transformation of the obligate outcrosser Capsella grandiflora

Dew-Budd, K.; David, B.; Beilstein, M.

10.1101/757328 — plant biology — Posted on 2019-09-04

3268 Spherical arena reveals optokinetic response tuning to stimulus location, size and frequency across entire visual field of larval zebrafish

Dehmelt, F. A.; Meier, R.; Hinz, J.; Yoshimatsu, T.; Simacek, C. A.; Wang, K.; Baden, T. B.; Arrenberg, A. B.

10.1101/754408 — neuroscience — Posted on 2019-09-04

3269 Predicting Alzheimer’s disease progression using deep recurrent neural networks

Nguyen, M.; He, T.; An, L.; Alexander, D. C.; Feng, J.; Yeo, B. T. T.

10.1101/755058 — neuroscience — Posted on 2019-09-04

3270 Streptococcus pyogenes Cas9 displays biased one-dimensional diffusion on dsDNA to search for a target

Yang, M.; Zhang, L.; Sun, R.; Zhong, W.; Yang, Y.; Chen, C.

10.1101/754564 — biochemistry — Posted on 2019-09-04

3271 Sorting for CCR7-positivity enriches for a dendritic cell population with enhanced antigen-presenting capacity and anti-tumour potency

Burgoyne, P.; Hayes, A. J.; Cooper, R. S.; Le Brocq, M. L.; Hansell, C. A. H.; Campbell, J. D. M.; Graham, G. J.

10.1101/755488 — immunology — Posted on 2019-09-04

3272 Molecular mechanism of translational stalling by inhibitory codon combinations and poly(A) tracts

Tesina, P.; Lessen, L. N.; Buschauer, R.; Cheng, J.; Wu, C. C.-C.; Berninghausen, O.; Buskirk, A. R.; Becker, T.; Beckmann, R.; Green, R.

10.1101/755652 — biochemistry — Posted on 2019-09-04

3273 A simple method to quantify proteins from one thousand cells

Vitrinel, B.; Iannitelli, D. E.; Mazzoni, E. O.; Christiaen, L.; Vogel, C.

10.1101/753582 — systems biology — Posted on 2019-09-04

3274 Major histocompatibility complex class I-restricted protection against murine cytomegalovirus requires missing-self recognition by the natural killer cell inhibitory Ly49 receptors

Parikh, B. A.; Bern, M. D.; Piersma, S. J.; Yang, L.; Beckman, D. L.; Poursine-Laurent, J.; Plougastel-Douglas, B.; Yokoyama, W. M. M.

10.1101/753970 — immunology — Posted on 2019-09-04

3275 QTL mapping of intestinal neutrophil variation and inflammation between threespine stickleback populations reveals links to neurodegenerative disease

Beck, E. A.; Currey, M. C.; Small, C. M.; Cresko, W. A.

10.1101/757351 — genetics — Posted on 2019-09-04

3276 Fine-mapping of SNCA in REM sleep behavior disorder and overt synucleinopathies

Krohn, L. M.; Wu, R. Y.; Heilbron, K.; Ruskey, J. A.; Laurent, S. B.; Blauwendraat, C.; Alam, A.; Arnulf, I.; Hu, M. T.; Dauvilliers, Y.; Högl, B.; Toft, M.; Bjornara, K. A.; Stefani, A.; Holzknecht, E.; Monaca, C. C.; Beatriz, A.; Plazzi, G.; Antelmi, E.; Ferini-Strambi, L.; Young, P.; Heidbreder, A.; Cochen De Cock, V.; Mollenhauer, B.; Sixel-Döring, F.; Trenkwalder, C.; Sonka, K.; Kemlink, D.; Figorilli, M.; Puligheddu, M.; Dijkstra, F.; Viaene, M.; Oertel, W.; Toffoli, M.; Gigli, G. L.; Valente, M.; Gagnon, J.-F.; Nalls, M. A.; Singleton, A. B.; 23andMe Research Team, ; Desautels, A.; M

10.1101/756528 — genetics — Posted on 2019-09-04

3277 EnClaSC: A novel ensemble approach for accurate and robust cell-type classification of single-cell transcriptomes

Chen, X.; Chen, S.; Jiang, R.

10.1101/754085 — bioinformatics — Posted on 2019-09-04

3278 A rare opportunist, Morganella morganii, decreases severity of polymicrobial catheter-associated urinary tract infection

Learman, B. S.; Brauer, A. L.; Eaton, K.; Armbruster, C. E.

10.1101/754135 — microbiology — Posted on 2019-09-04

3279 Implicit versus explicit control strategies in models for vector-borne disease epidemiology

Demers, J.; Robertson, S. L.; Bewick, S.; Fagan, W. F.

10.1101/753475 — ecology — Posted on 2019-09-04

3280 Reconstruction of plant-pollinator networks from observational data

Young, J.-G.; Valdovinos, F. S.; Newman, M. E. J.

10.1101/754077 — ecology — Posted on 2019-09-04

3281 Essential omega-3 fatty acids tune microglial phagocytosis of synaptic elements in the developing brain

Madore, C.; Leyrolle, Q.; Morel, L.; Delpech, J.-C.; Greenhalgh, A. D.; Lacabanne, C.; Bosch-Bouju, C.; Bourel, J.; Thomazeau, A.; Hopperton, K. E.; Beccari, S.; Sere, A.; Aubert, A.; De Smedt-Peyrusse, V.; Lecours, C.; Bisht, K.; Fourgeaud, L.; Gregoire, S.; Bretillon, L.; Grant, N. J.; Badaut, J.; Gressens, P.; Sierra, A.; Butovsky, O.; Tremblay, M.-E.; Bazinet, R. P.; Joffre, C.; Nadjar, A.; Laye, S.

10.1101/744136 — neuroscience — Posted on 2019-09-04

3282 Drosophila melanogaster Peroxisome Biogenesis Factor 7 plays a role in embryonic development

Simmonds, A. J.; Pridie, C.

10.1101/757815 — genetics — Posted on 2019-09-04

3283 ROS function as a distinct mitochondrial retrograde response factor for appropriate cardiogenic specifications and cardiac function in Drosophila embryos

Sharma, S.

10.1101/757666 — developmental biology — Posted on 2019-09-04

3284 Understanding biological ageing in terms of constitutive signals: Convergence to an average decrease in cellular sensitivity and information transmission

Martinez Guimera, A.; Shanley, D. P.

10.1101/753566 — systems biology — Posted on 2019-09-04

3285 Extinguishing cocaine-associated discriminative stimuli attenuates cocaine vs food choice in male rhesus monkeys

Banks, M.; Hutsell, B. A.; Negus, S. S.

10.1101/753699 — neuroscience — Posted on 2019-09-04

3286 Wolbachia infection in Argentinean populations of Anastrepha fraterculus sp1: preliminary evidence of sex ratio distortion by one of two strains

Conte, C. A.; Segura, D. F.; Milla, F. H.; Augoustinos, A. A.; Cladera, J. L.; Bourtzis, K.; Lanzavecchia, S. B.

10.1101/738500 — molecular biology — Posted on 2019-09-04

3287 Bioremediation of hydrocarbon contaminated soil from Carlini Station, Antarctica: effectiveness of different nutrient sources as biostimulation agents

Villalba Primitz, J.; Vazquez, S. C.; Ruberto, L.; Lo Balbo, A.; Mac Cormack, W.

10.1101/753384 — microbiology — Posted on 2019-09-04

3288 Laboratory Evolution Experiments Help Identify a Predominant Site of ΔrnhA-dnaA Constitutive Stable DNA Replication Initiation

Veetil, R. T.; Malhotra, N.; Dubey, A.; Seshasayee, A. S. N.

10.1101/757963 — genomics — Posted on 2019-09-04

3289 Distinguishing pedigree relationships using multi-way identical by descent sharing and sex-specific genetic maps

Qiao, Y.; Sannerud, J.; Basu-Roy, S.; Hayward, C.; Williams, A. L.

10.1101/753343 — genetics — Posted on 2019-09-04

3290 Exome sequences of toque macaques (Macaca sinica) of Sri Lanka reveal many amino acid changes

Hettiarachchi, N. N.; Osada, N.; Hayakawa, T.; Nakaoka, H.; Saitou, N.; Inoue, I.

10.1101/740761 — evolutionary biology — Posted on 2019-09-04

3291 The Secretome of Liver X Receptor Agonist Treated Early Outgrowth Cells Decreases Atherosclerosis in Ldlr-/- Mice

Rasheed, A.; Shawky, S.; Tsai, R.; Jung, R. G.; Simard, T.; Hibbert, B.; Rayner, K. J.; Cummins, C. L.

10.1101/757435 — cell biology — Posted on 2019-09-04

3292 Male song sparrows modulate their aggressive signaling in response to plumage signals: experiments with 3-D printed models

Beck, M. L.; Akcay, C.; Sewall, K. B.

10.1101/753772 — animal behavior and cognition — Posted on 2019-09-04

3293 Bat coronavirus phylogeography in the western Indian Ocean

Joffrin, L.; Goodman, S. M.; Wilkinson, D. A.; Ramasindrazana, B.; Lagadec, E.; Gomard, Y.; Le Minter, G.; Dos Santos, A.; Schoeman, M. C.; Sookhareea, R.; Tortosa, P.; Julienne, S.; Gudo, E.; Mavingui, P.; Lebarbenchon, C.

10.1101/742866 — evolutionary biology — Posted on 2019-09-04

3294 Gradual decrease in the inter-population diversity of HIV-1 Env among group M lineages worldwide

Han, C.; Johnson, J. M.; Dong, R.; Kandula, R.; Kort, A. J.; Wong, M.; Yang, T.; Breheny, P. J.; Brown, G. D.; Haim, H.

10.1101/753285 — evolutionary biology — Posted on 2019-09-04

3295 The effect of autopolyploidy on population genetic signals of hard sweeps

Monnahan, P.; Brandvain, Y.

10.1101/753491 — evolutionary biology — Posted on 2019-09-04

3296 Input dose differentiation by NF-κB

Son, M.; Wang, A.; Tu, H.-L.; Metzig, M. O.; Patel, P.; Husain, K.; Lin, J.; Murugan, A.; Hoffmann, A.; Tay, S.

10.1101/752394 — systems biology — Posted on 2019-09-04

3297 Effects of Repeated Treatment with Monoamine-Transporter-Inhibitor Antidepressants on Pain-Related Depression of Intracranial Self-Stimulation in Rats

Negus, S. S.; Karim-Nejad, L.; Legakis, L. P.

10.1101/753905 — pharmacology and toxicology — Posted on 2019-09-04

3298 Cariogenic Streptococcus mutans produces strain-specific antibiotics that impair commensal colonization

Tang, X.; Kudo, Y.; Baker, J.; LaBonte, S.; Jordan, P.; McKinnie, S.; Guo, J.; Huan, T.; Moore, B.; Edlund, A.

10.1101/755025 — microbiology — Posted on 2019-09-04

3299 Single cell and single nucleus RNA-Seq reveal cellular heterogeneity and homeostatic regulatory networks in adult mouse stria vascularis

Korrapati, S.; Taukulis, I.; Olszewski, R.; Pyle, M.; Gu, S.; Singh, R.; Griffiths, C.; Izquierdo, D. M.; Boger, E.; Morell, R. J.; Hoa, M.

10.1101/756635 — genomics — Posted on 2019-09-04

3300 The cyanobacterial saxitoxin exacerbates neural cell death and brain malformations induced by Zika virus

Pedrosa, C.; Souza, L.; Victorino, C.; Ledur, P.; Karmirian, K.; Gomes, T.; Barbeito-Andres, J.; Costa, M.; Higa, L.; Bellio, M.; Lara, F.; Tanuri, A.; Garcez, P.; Prata-Barbosa, A.; Tovar-Moll, F.; Molica, R.; Rehen, S. K.

10.1101/755066 — neuroscience — Posted on 2019-09-04

3301 Impaired carotid body hypoxic sensing in mice deficient in olfactory receptor 78

Peng, Y.-J.; Gridina, A.; Nanduri, J.; Fox, A.; Prabhakar, N. R.

10.1101/757120 — physiology — Posted on 2019-09-04

3302 Direct Arp2/3-vinculin binding is essential for cell spreading, but only on compliant substrates and in 3D

Isogai, T.; Dean, K. M.; Roudot, P.; Shao, Q.; Cillay, J. D.; Welf, E. S.; Driscoll, M. K.; Royer, S. P.; Mittal, N.; Chang, B.-j.; Han, S. J.; Fiolka, R.; Danuser, G.

10.1101/756718 — cell biology — Posted on 2019-09-04

3303 Miswired enhancer logic drives translocation positive rhabdomyosarcoma

Gryder, B. E.; Wachtel, M.; Chang, K.; Demerdash, O. E.; Aboreden, N. G.; Ewert, W.; Pomella, S.; Mohammed, W.; Rota, R.; Wei, J. S.; Song, Y.; Schaefer, B.; Vakoc, C. R.; Khan, J.

10.1101/757369 — cancer biology — Posted on 2019-09-04

3304 Bacterial diversity in deep-sea sediments under influence of asphalt seep at the Sao Paulo Plateau

Queiroz, L. L.; Bendia, A.; Duarte, R. T. D.; Gracas, D. A. d.; Silva, A. L. d. C. d.; Nakayama, C. R.; Sumida, P. Y.; Lima, A. O. S.; Nagano, Y.; Fujikura, K.; Kitazato, H.; Pellizari, V. H.

10.1101/753616 — microbiology — Posted on 2019-09-04

3305 Understanding and eliminating the detrimental effect of endogenous thiamine auxotrophy on metabolism of the oleaginous yeast Yarrowia lipolytica

Walker, C.; Ryu, S.; Giannone, R. J.; Garcia, S.; Trinh, C. T.

10.1101/753525 — microbiology — Posted on 2019-09-04

3306 A novel weight lifting task for investigating effort and persistence in rats

Porter, B. S.; Hillman, K. L.

10.1101/752410 — animal behavior and cognition — Posted on 2019-09-04

3307 Apical length modulates dendritic excitability in L5 pyramidal neurons

Galloni, A. R.; Laffere, A.; Rancz, E. A.

10.1101/754499 — neuroscience — Posted on 2019-09-04

3308 The Influence of Blood Collection Tubes in Biomarkers Screening by Mass Spectrometry

Zhang, S.; Zhao, Z.; Duan, W.; li, Z.; Nan, Z.; Du, H.; Wang, M.; Yang, J.; Huang, C.

10.1101/753111 — cancer biology — Posted on 2019-09-04

3309 Solving the transcription start site identification problem with ADAPT-CAGE: a Machine Learning algorithm for analysis of CAGE data

Georgakilas, G. K.; Perdikopanis, N.; Hatzigeorgiou, A.

10.1101/752253 — bioinformatics — Posted on 2019-09-04

3310 Differential introgression reveals thermal adaptation and candidate genes shaping species boundaries in North American box turtles (Terrapene spp.)

Martin, B. T.; Douglas, M. R.; Chafin, T. K.; Placyk, J. S.; Birkhead, R. D.; Phillips, C. A.; Douglas, M. E.

10.1101/752196 — evolutionary biology — Posted on 2019-09-04

3311 Resistance and Tolerance to Root Herbivory in Maize were Mediated by Domestication, Spread, and Breeding

Fontes-Puebla, A. A.; Bernal, J. S.

10.1101/751982 — ecology — Posted on 2019-09-04

3312 Loss of O-linked protein glycosylation in Burkholderia cenocepacia impairs biofilm formation and siderophore production via alteration of quorum sensing regulation

Oppy, C. C.; Jebeli, L.; Kuba, M.; Oates, C.; Strugnell, R. A.; Edgington-Mitchell, L.; Valvano, M. A.; Hartland, E. L.; Newton, H. J.; Scott, N. E.

10.1101/757575 — microbiology — Posted on 2019-09-04

3313 Genomics reveals the origins of ancient specimens

Cong, Q.; Shen, J.; Zhang, J.; Kinch, L. N.; Calhoun, J. V.; Warren, A. D.; Grishin, N. V.

10.1101/752121 — zoology — Posted on 2019-09-04

3314 Elongations of epithelial colony in vitro: symmetry breaking through collective effects

Comelles, J.; Soumya, S. S.; Anvitha, S.; Salbreux, G.; Jülicher, F.; Inamdar, M. M.; Riveline, D.

10.1101/755181 — biophysics — Posted on 2019-09-04

3315 Recruitment orders underlying binocular coordination of eye position and velocity in the larval zebrafish hindbrain

Brysch, C.; Leyden, C.; Arrenberg, A. B.

10.1101/754226 — neuroscience — Posted on 2019-09-04

3316 Integrated annotations and analyses of small RNA-producing loci from 47 diverse plants

Lunardon, A.; Johnson, N. R.; Hagerott, E.; Phifer, T.; Polydore, S.; Coruh, C.; Axtell, M. J.

10.1101/756858 — plant biology — Posted on 2019-09-04

3317 Temperature response of wheat affects final height and the timing of key developmental stages under field conditions

Kronenberg, L.; Yates, S.; Boer, M. P.; Kirchgessner, N.; Walter, A.; Hund, A.

10.1101/756700 — plant biology — Posted on 2019-09-04

3318 Camelina (Camelina sativa L. Crantz) Crop Performance, Insect Pollinators, and Pollen Dispersal in the Northeastern US.

Auer, C.; Rizzitello, R.; Zhang, C.-J.

10.1101/756619 — plant biology — Posted on 2019-09-04

3319 Transcriptional and post-transcriptional regulation and transcriptional memory of chromatin regulators in response to low temperature

Vyse, K.; Faivre, L.; Romich, M.; Pagter, M.; Schubert, D.; Hincha, D.; Zuther, E.

10.1101/757179 — plant biology — Posted on 2019-09-04

3320 Identification of the Repressive Domain of the Negative Circadian Clock Component CHRONO

Yang, Y.; Li, N.; Qiu, J.; Ge, H.; Qin, X.

10.1101/754168 — molecular biology — Posted on 2019-09-04

3321 Size-dependent increase in RNA Polymerase II initiation rates mediates gene expression scaling with cell size

Sun, X.-M.; Bowman, A.; Priestman, M.; Bertaux, F.; Martinez-Segura, A.; Tang, W.; Dormann, D.; Shahrezaei, V.; Marguerat, S. B.

10.1101/754788 — molecular biology — Posted on 2019-09-04

3322 Discovery and evaluation of a novel step in the flavonoid biosynthesis pathway regulated by F3H gene using a yeast expression system

Kim, K.-M.; Jan, R.; Asaf, S.; Paudel, S.; Lee, S. k.

10.1101/753210 — molecular biology — Posted on 2019-09-04

3323 Single-cell transcriptomics identifies an effectorness gradient shaping the response of CD4+ T cells to cytokines

Gamez, E. C.; Soskic, B.; Roumeliotis, T. I.; So, E.; Smyth, D. J.; Baldrighi, M.; Wille, D.; Nakic, N.; Esparza-Gordillo, J.; Larminie, C. G. C.; Bronson, P. G.; Tough, D. F.; Rowan, W. C.; Choudhary, J. S.; Trynka, G.

10.1101/753731 — immunology — Posted on 2019-09-04

3324 Neglecting low season nest protection exacerbates female biased sea turtle hatchling production through the loss of male producing nests.

Hart, C. E.; Tello-Sahagun, L. A.; Abreu-Grobois, F. A.; Zavala-Norzagaray, A. A.; Girondot, M.; Ley-Quinonez, C. P.

10.1101/752071 — ecology — Posted on 2019-09-04

3325 Immune genes, IL1β and Casp9, show sexual dimorphic methylation patterns in the zebrafish gonads

Caballero, M.; Moraleda-Prados, J.; Joly, S.; Ribas, L.

10.1101/753301 — immunology — Posted on 2019-09-04

3326 Spontaneous oligomerization of BAK/BAX is suppressed by hetero-dimerization with MCL-1

Clarke, J.; Robinson, C. V.; Wicky, B. I. M.; Gupta, K.; Kwan, T. O. C.

10.1101/756874 — biophysics — Posted on 2019-09-04

3327 Genetic Control of Radical Crosslinking in a Semi-Synthetic Hydrogel

Graham, A. J.; Dundas, C. M.; Hillsley, A.; Kasprak, D. S.; Rosales, A. M.; Keitz, B. K.

10.1101/752436 — synthetic biology — Posted on 2019-09-04

3328 Classification of Brain Tumor IDH Status using MRI and Deep Learning

Nalawade, S.; Murugesan, G.; Jahromi, M. V.; Fisicaro, R.; Bangalore Yogananda, C. G.; Wagner, B.; Mickey, B.; Maher, E.; Pinho, M.; Fei, B.; Madhuranthakam, A.; Maldjian, J.

10.1101/757344 — neuroscience — Posted on 2019-09-04

3329 Novel genetic determinants of telomere length from a multi-ethnic analysis of 75,000 whole genome sequences in TOPMed

Taub, M. A.; Weinstock, J. S.; Iyer, K. R.; Yanek, L. R.; Conomos, M. P.; NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium, ; Reiner, A. P.; Mathias, R. A.

10.1101/749010 — genetics — Posted on 2019-09-04

3330 Octanol-water partition coefficient measurements for the SAMPL6 Blind Prediction Challenge

Isık, M.; Levorse, D.; Mobley, D. L.; Rhodes, T.; Chodera, J. D.

10.1101/757393 — biophysics — Posted on 2019-09-04

3331 A novel polyubiquitin chain linkage formed by viral Ubiquitin prevents cleavage by deubiquitinating enzymes

Negi, H.; Reddy, P. P.; Patole, C.; Das, R.

10.1101/756791 — biochemistry — Posted on 2019-09-04

3332 Suppression of p53 response by targeting p53-Mediator binding with a stapled peptide

Allen, B. L.; Quach, K.; Levandowski, C. B.; Rubin, J. D.; Read, T.; Dowell, R. D.; Schepartz, A.; Taatjes, D. J.

10.1101/757401 — molecular biology — Posted on 2019-09-04

3333 A signaling axis involving CNOT3, Aurora B and ERK promotes mesendodermal differentiation of ES cells in response to FGF2 and BMP4

Sarkar, M.; Martufi, M.; Roman-Trufero, M.; Wang, Y.-F.; Whilding, C.; Dormann, D.; Sabbattini, P.; Dillon, N.

10.1101/756932 — developmental biology — Posted on 2019-09-04

3334 Local regulation of lipid synthesis controls ER sheet insertion into nuclear envelope holes to complete nuclear closure

Penfield, L.; Shankar, R.; Szentgyörgyi, E.; Laffitte, A.; Mauro, M.; Audhya, A.; Müller-Reicher, T.; Bahmanyar, S.

10.1101/757013 — cell biology — Posted on 2019-09-04

3335 Proteomic analysis of the desmosome identifies novel components required for skin integrity

Badu-Nkansah, K.; Lechler, T.

10.1101/757203 — cell biology — Posted on 2019-09-04

3336 Uncovering active modulators of native macroautophagy through novel high-content screens

Safren, N.; Tank, E. M.; Santoro, N.; Barmada, S. J.

10.1101/756973 — cell biology — Posted on 2019-09-04

3337 Chemical genetics of AGC-kinases reveals shared targets of Ypk1, Protein Kinase A and Sch9

Plank, M.; Perepelkina, M.; Müller, M.; Vaga, S.; Zou, X.; Berti, M.; Saarbach, J.; Haesendonckx, S.; Winssinger, N.; Aebersold, R.; Loewith, R.

10.1101/756841 — cell biology — Posted on 2019-09-04

3338 Control of clathrin-mediated endocytosis by NIMA family kinases

Joseph, B. B.; Wang, Y.; Lazetic, V.; Edeen, P.; Grant, B.; Fay, D. S.

10.1101/757427 — cell biology — Posted on 2019-09-04

3339 Choosing and learning: outcome valence differentially affects learning from free versus forced choices

Chambon, V.; Thero, H.; Vidal, M.; Vandendriessche, H.; Haggard, P.; Palminteri, S.

10.1101/637157 — neuroscience — Posted on 2019-09-04

3340 Gene expression plasticity and frontloading promote thermotolerance in Pocillopora corals

Brener-Raffalli, K.; Vidal-Dupiol, J.; Adjeroud, M.; Rey, O.; Romans, P.; Bonhomme, F.; Pratlong, M.; Haguenauer, A.; Pillot, R.; Feuillassier, L.; Claereboudt, M.; Magalon, H.; Gelin, P.; Pontarotti, P.; Aurelle, D.; Mitta, G.; Toulza, E.

10.1101/398602 — evolutionary biology — Posted on 2019-09-04

3341 Sex chromosomes control vertical transmission of feminizing Wolbachia symbionts in an isopod

Becking, T.; Chebbi, M. A.; Giraud, I.; Moumen, B.; Laverre, T.; Caubet, Y.; Peccoud, J.; Gilbert, C.; Cordaux, R.

10.1101/747444 — evolutionary biology — Posted on 2019-09-04

3342 Response relationships between CO2, CH4 and N2O emissions and microbial functional groups in wetland sediments after trace metal addition.

Giannopoulos, G.; Hartop, K. R.; Brown, B. L.; Franklin, R.

10.1101/515809 — ecology — Posted on 2019-09-04

3343 Evolution of gene regulatory networks by means of selection and random genetic drift

Kioukis, A.; Pavlidis, P.

10.1101/449645 — bioinformatics — Posted on 2019-09-04

3344 Data-theoretical Synthesis of the Early Developmental Process

Alicea, B. J.; Gordon, R.; Portegys, T. E.

10.1101/282004 — systems biology — Posted on 2019-09-04

3345 Shared risk alleles with discordant polygenic effects: Disentangling the genetic overlap between ASD and ADHD

Verhoef, E.; Grove, J.; Shapland, C. Y.; Demontis, D.; Burgess, S.; Rai, D.; Borglum, A. D.; St Pourcain, B.

10.1101/580365 — genetics — Posted on 2019-09-04

3346 UDSMProt: Universal Deep Sequence Models for Protein Classification

Strodthoff, N.; Wagner, P.; Wenzel, M.; Samek, W.

10.1101/704874 — synthetic biology — Posted on 2019-09-04

3347 Multivariate pattern analysis of fMRI data for imaginary and real colours in grapheme-colour synaesthesia

Ruiz, M. J.; Dojat, M.; Hupe, J.-M.

10.1101/214809 — neuroscience — Posted on 2019-09-04

3348 Variability in β-catenin pulse dynamics in a stochastic cell fate decision in C. elegans

Kroll, J. R.; Tsiaxiras, J.; van Zon, J. S.

10.1101/245225 — developmental biology — Posted on 2019-09-04

3349 Bacteria- and temperature-regulated peptides modulate beta-catenin signaling in Hydra

Taubenheim, J.; Willoweit-Ohl, D.; Knop, M.; Franzenburg, S.; Bosch, T. C. G.; Fraune, S.

10.1101/747303 — developmental biology — Posted on 2019-09-04

3350 Interaction between the assembly of the ribosomal subunits: Disruption of 40S ribosomal assembly causes accumulation of extra-ribosomal 60S ribosomal protein uL18/L5

Rahman, N.; Shamsuzzaman, M.; Lindahl, L.

10.1101/756114 — molecular biology — Posted on 2019-09-03

3351 Insight into the resistome and quorum sensing system of a divergent Acinetobacter pittii isolate from an untouched site of the Lechuguilla Cave

Gan, H. M.; Wengert, P.; Barton, H.; Hudson, A. O.; Savka, M.

10.1101/745182 — microbiology — Posted on 2019-09-03

3352 No consistent effects of humans on animal genetic diversity worldwide

Millette, K. L.; Fugere, V.; Debyser, C.; Greiner, A.; Chain, F. J. J.; Gonzalez, A.

10.1101/527739 — evolutionary biology — Posted on 2019-09-03

3353 HY5 is not integral to light mediated stomatal development in Arabidopsis

Zoulias, N.; Brown, J.; Rowe, J.; Casson, S.

10.1101/756221 — plant biology — Posted on 2019-09-03

3354 Prevalence of Stunting and Associated Factors among public Primary School pupils of Bahir Dar city, Ethiopia: School-Based Cross-Sectional Study

Bantie, G. M.; Akenew, K. H.; Belete, M. T.; Tena, E. T.; Gebretsadik, G. G.; Tsegaw, A. N.; Woldemariam, T. B.; Woya, A. A.; Melese, A. A.

10.1101/756239 — immunology — Posted on 2019-09-03

3355 Draft genome sequences of five Proteobacteria isolated from Lechuguilla Cave, New Mexico, USA: Insights into taxonomy and quorum-sensing

Gan, H. M.; Wengert, P.; Barton, H.; Hudson, A. O.; Savka, M. A.

10.1101/742460 — genomics — Posted on 2019-09-03

3356 Nanopore sequencing of the glucocerebrosidase (GBA) gene in a New Zealand Parkinsons disease cohort

Graham, O. E. E.; Pitcher, T. L.; Liau, Y.; Miller, A.; Dalrymple-Alford, J. C.; Anderson, T. J.; Kennedy, M. A.

10.1101/748335 — genetics — Posted on 2019-09-03

3357 Separable roles for RanGTP in nuclear and ciliary trafficking of a kinesin-2 subunit

Huang, S.; Avasthi, P.

10.1101/562272 — cell biology — Posted on 2019-09-03

3358 High-speed atomic force microscopy visualizes mobility of photosynthetic proteins in grana thylakoid membranes

Onoa, B.; Fukuda, S.; Iwai, M.; Bustamante, C.; Niyogi, K. K.

10.1101/426759 — biophysics — Posted on 2019-09-03

3359 Frameshifts and wild-type protein sequences are always similar because the genetic code is nearly optimal for frameshift tolerance

Wang, X.; Chen, G.; Zhang, J.; Liu, Y.; Cai, Y.

10.1101/067736 — genetics — Posted on 2019-09-03

3360 Transcriptomic Profiling of Developing Melanocortin Neurons Reveals a Role for Prdm12 in Energy Balance

Chen, X.; Wyler, S. C.; Li, L.; Arnold, A. G.; Wan, R.; Xu, P.; Liu, C.

10.1101/753434 — neuroscience — Posted on 2019-09-03

3361 Sterol flow between the plasma membrane and the endosome is regulated by the LAM family protein Ltc1

Marek, M.; Vincenzetti, V.; Martin, S. G.

10.1101/720383 — cell biology — Posted on 2019-09-03

3362 Context-dependent decision making in a premotor circuit

Wu, Z.; Litwin-Kumar, A.; Shamash, P.; Taylor, A.; Axel, R.; Shadlen, M. N.

10.1101/757104 — neuroscience — Posted on 2019-09-03

3363 Stimulus-specific information flow across the canonical cortical microcircuit

Tovar, D. A.; Westerberg, J. A.; Cox, M. A.; Dougherty, K.; Carlson, T.; Wallace, M. T.; Maier, A.

10.1101/753368 — neuroscience — Posted on 2019-09-03

3364 Fluoxetine improves behavioural deficits induced by chronic alcohol addiction by alleviating RNA editing of 5-HT2C receptors in astrocytes

Li, Z.; Liang, S.; Li, S.; Chen, B.; Zhang, M.; Xia, M.; Guan, D.; Verkhratsky, A.; Li, B.

10.1101/751065 — neuroscience — Posted on 2019-09-03

3365 Chronic pain alters microvascular architectural organization of somatosensory cortex

Zippo, A. G.; Del Grosso, V.; Patera, A.; Riccardi, M. P.; Tredici, I. G.; Bertoli, G. R.; Mittone, A.; Valente, M.; Stampanoni, M.; Coan, P.; Bravin, A.; Biella, G. M. E.

10.1101/755132 — neuroscience — Posted on 2019-09-03

3366 Antibody Complementarity Determining Region Design Using High-Capacity Machine Learning

Liu, G.; Zeng, H.; Mueller, J.; Carter, B.; Wang, Z.; Schilz, J.; Horny, G.; Birnbaum, M. E.; Ewert, S.; Gifford, D. K.

10.1101/682880 — immunology — Posted on 2019-09-03

3367 Pharmacological or genetic targeting of Transient Receptor Potential (TRP) channels can disrupt the planarian escape response

Sabry, Z.; Ho, A.; Ireland, D.; Rabeler, C.; Cochet-Escartin, O.; Collins, E.-M.

10.1101/753244 — animal behavior and cognition — Posted on 2019-09-03

3368 Experience-dependent development of dendritic arbors in mouse visual cortex

Richards, S. E.; Moore, A. R.; Nam, A. Y.; Saxena, S.; Paradis, S.; Van Hooser, S. D.

10.1101/755934 — neuroscience — Posted on 2019-09-03

3369 Type-specific dendritic integration in mouse retinal ganglion cells

Ran, Y.; Huang, Z.; Baden, T.; Baayen, H.; Berens, P.; Franke, K.; Euler, T.

10.1101/753335 — neuroscience — Posted on 2019-09-03

3370 Differential Striatal Axonal Arborizations of the Intratelencephalic and Pyramidal-Tract Neurons: Analysis of the Data in the MouseLight Database

Morita, K.; Im, S.; Kawaguchi, Y.

10.1101/752824 — neuroscience — Posted on 2019-09-03

3371 Network analysis of mesoscale mouse brain structural connectome reveals modular structure that aligns with anatomical regions and sensory pathways

Pailthorpe, B. A.

10.1101/755041 — neuroscience — Posted on 2019-09-03

3372 Extreme genomic volatility characterises the evolution of the immunoglobulin heavy chain locus in teleost fishes

Bradshaw, W. J.; Valenzano, D. R.

10.1101/752063 — immunology — Posted on 2019-09-03

3373 Long range channelrhodopsin-assisted circuit mapping of inferior colliculus neurons with blue and red-shifted channelrhodopsins

Goyer, D.; Roberts, M. T.

10.1101/756957 — neuroscience — Posted on 2019-09-03

3374 hypeR: An R Package for Geneset Enrichment Workflows

Federico, A.; Monti, S.

10.1101/656637 — bioinformatics — Posted on 2019-09-03

3375 Novel Comparison of Evaluation Metrics for Gene Ontology Classifiers Reveals Drastic Performance Differences

Plyusnin, I.; Holm, L.; Törönen, P.

10.1101/427096 — bioinformatics — Posted on 2019-09-03

3376 PlotTwist - a web app for plotting and annotating time-series data

Goedhart, J.

10.1101/745612 — scientific communication and education — Posted on 2019-09-03

3377 Emergence of an invariant representation of texture in primate somatosensory cortex

Lieber, J. D.; Bensmaia, S.

10.1101/646042 — neuroscience — Posted on 2019-09-03

3378 24-hour multi-omics analysis of residential sewage reflects human activity and informs public health

Matus, M.; Duvallet, C.; Kido Soule, M.; Kearney, S. M.; Endo, N.; Ghaeli, N.; Brito, I.; Ratti, C.; Kujawinski, E.; Alm, E. J.

10.1101/728022 — genomics — Posted on 2019-09-03

3379 Replicability of Structural Brain Alterations Associated with General Psychopathology: Evidence from a Population-Representative Birth Cohort

Romer, A. L.; Knodt, A. R.; Sison, M. L.; Ireland, D.; Houts, R.; Ramrakha, S.; Poulton, R.; Keenan, R.; Melzer, T. R.; Moffitt, T. E.; Caspi, A.; Hariri, A. R.

10.1101/667220 — neuroscience — Posted on 2019-09-03

3380 SliceIt: A genome-wide resource and visualization tool to design CRISPR/Cas9 screens for editing protein-RNA interaction sites in the human genome

Vemuri, S.; Srivastava, R.; Mir, Q.; Hashemikhabir, S.; Dong, X. C.; Janga, S. C.

10.1101/654640 — bioinformatics — Posted on 2019-09-03

3381 A manual multiplex immunofluorescence method for investigating neurodegenerative diseases

Ehrenberg, A. J.; Morales, D. O.; Tejedor, J. S.; Mladinov, M.; Piergies, A.; Mulder, J.; Grinberg, L. T.

10.1101/533547 — pathology — Posted on 2019-09-03

3382 Oscillatory Mechanisms of Successful Memory Formation in Younger and Older Adults Are Related to Structural Integrity

Sander, M. C.; Fandakova, Y.; Grandy, T. H.; Shing, Y. L.; Werkle-Bergner, M.

10.1101/530121 — neuroscience — Posted on 2019-09-03

3383 Molecular Characterisation of the Synovial Fluid Microbiome in Rheumatoid Arthritis Patients and Healthy Control Subjects

Hammad, D. B.; Liyanapathirana, V. C.; Tonge, D. P.

10.1101/405613 — microbiology — Posted on 2019-09-03

3384 4D imaging and analysis of multicellular tumour spheroid cell migration and invasion

Richards, R.; Mason, D.; Kelly, R.; Levy, R.; Bearon, R.; See, V.

10.1101/443648 — cell biology — Posted on 2019-09-03

3385 Defined factors to reactivate cell cycle activity in adult mouse cardiomyocytes

Judd, J.; Lovas, J.; Huang, G. N.

10.1101/755991 — developmental biology — Posted on 2019-09-03

3386 Cis-Regulatory Accessibility Directs Muller Glial Development and Regenerative Capacity

Reh, T. A.; VandenBosch, L. S.; Wohl, S. G.; Wilken, M. S.; Chipman, L.; Cox, K.

10.1101/752428 — developmental biology — Posted on 2019-09-03

3387 Quantifying topography-guided actin dynamics across scales using optical flow

Lee, R. M.; Campanello, L.; Hourwitz, M.; Alvarez, P.; Omidvar, A.; Fourkas, J. T.; Losert, W.

10.1101/753681 — biophysics — Posted on 2019-09-03

3388 The ESCRT-III Isoforms CHMP2A And CHMP2B Display Different Effects On Membranes Upon Polymerization

Alqabandi, M.; de Franceschi, N.; Miguet, N.; Maity, S.; Bally, M.; Roos, W.; Weissenhorn, W.; Bassereau, P.; Mangenot, S.

10.1101/756403 — biophysics — Posted on 2019-09-03

3389 Loss of a novel striated muscle-enriched mitochondrial protein Coq10a enhances postnatal cardiac hypertrophic growth

Hirose, K.; Chang, S.; Yu, H.; Wang, J.; Barca, E.; Chen, X.; Khyeam, S.; Tajima, K.; Yoneshiro, T.; Kajimura, S.; Quinzii, C. M.; Hu, G.; Huang, G. N.

10.1101/755793 — developmental biology — Posted on 2019-09-03

3390 STAT pathway activation limits the Ascl1-mediated chromatin remodeling required for neural regeneration from Muller glia in adult mouse retina.

Reh, T. A.; Jorstad, N. L.; Wilken, M. S.; Todd, L.; Nakamura, P.; Radulovich, N.; Hooper, M. J.; Chitsazan, A.; Wilkerson, B. A.; Rieke, F.

10.1101/753483 — developmental biology — Posted on 2019-09-03

3391 In vitro and in vivo roles of glucocorticoid and vitamin D receptors in the control of cardiomyocyte proliferative potential

Cutie, S.; Lunn, D.; Huang, G.

10.1101/755827 — developmental biology — Posted on 2019-09-03

3392 Reactivation of chromosome signalling induces reversal of the meiotic program

Castellano-Pozo, M.; Pacheco, S.; Sioutas, G.; Jaso-Tamame, A. L.; Dore, M. H.; Martinez-Perez, E.

10.1101/754341 — cell biology — Posted on 2019-09-03

3393 Dimensionality changes actin network through lamin A and C and zyxin

Zonderland, J.; Moldero, I. L.; Mota, C. D.; Moroni, L.

10.1101/752691 — bioengineering — Posted on 2019-09-03

3394 Multistable and dynamic CRISPRi-based synthetic circuits in E. coli

Santos-Moreno, J.; Schaerli, Y.

10.1101/756338 — synthetic biology — Posted on 2019-09-03

3395 Engineering a functional NifDK polyprotein resistant to mitochondrial degradation

Allen, R. S.; Gregg, C. M.; Okada, S.; Menon, A.; Hussain, D.; Gillepsie, V.; Johnston, E.; Warden, A. C.; Taylor, M.; Colgrave, M.; Byrne, K.; Wood, C.

10.1101/755116 — synthetic biology — Posted on 2019-09-03

3396 Experimental Evidence for Constraints in Amplitude-Timescale Co-variation of a Biomolecular Pulse Generating Circuit Design

Patel, A.; Sen, S.

10.1101/756049 — synthetic biology — Posted on 2019-09-03

3397 Dominant toxicity of ALS-FTD-associated CHCHD10S59L is mediated by TDP-43 and PINK1

Baek, M.; Choe, Y. J.; Dorn, G.; Taylor, J. P.; Kim, N. C.

10.1101/753558 — neuroscience — Posted on 2019-09-03

3398 Early life stress impairs social function through AVP-dependent mechanisms

Brydges, N. M.; Hall, J.; Best, C.; Rule, L.; Watkin, H.; Drake, A.; Lewis, C.; Thomas, K.; Hall, J.

10.1101/741702 — neuroscience — Posted on 2019-09-03

3399 Insights into the dynamic control of breathing revealed through cell-type-specific responses to substance P

Baertsch, N. A.; Ramirez, J.-M.

10.1101/754879 — neuroscience — Posted on 2019-09-03

3400 Brainstem Neurons that Command Left/Right Locomotor Asymmetries

Cregg, J. M.; Leiras, R.; Montalant, A.; Wickersham, I. R.; Kiehn, O.

10.1101/754812 — neuroscience — Posted on 2019-09-03

3401 Replicated Umbilical Cord Blood DNA Methylation Loci Associated with Gestational Age at Birth

York, T.; Latendresse, S. J.; Jackson-Cook, C.; Lapato, D.; Moyer, S.; Wolen, A. R.; Roberson-Nay, R.; Do, E. K.; Murphy, S. K.; Hoyo, C.; Fuemmeler, B. F.; Strauss, J. F.

10.1101/749135 — genomics — Posted on 2019-09-03

3402 Structural studies of MMP-3 interaction with triple-helical collagen introduce the enzyme’s new roles in tissue remodelling

Manka, S. W.; Bihan, D.; Farndale, R. W.

10.1101/756460 — biochemistry — Posted on 2019-09-03

3403 A novel role for Eip74EF in male reproduction in promoting sperm elongation and male fecundity

Chebbo, S.; Josway, S.; Belote, J. M.; Manier, M.

10.1101/752451 — genetics — Posted on 2019-09-03

3404 Plasmodium falciparum growth is regulated by Sphingosine 1 phosphate produced by Host Erythrocyte Membrane Sphingosine kinase 1

Sah, R. K.; Saini, M.; Pati, S.; Singh, S.

10.1101/756502 — cell biology — Posted on 2019-09-03

3405 Duplicated KAI2 receptors with divergent ligand-binding specificities control distinct developmental traits in Lotus japonicus

Carbonnel, S.; Torabi, S.; Griesmann, M.; Bleek, E.; Tang, Y.; Buchka, S.; Basso, V.; Shindo, M.; Wang, T. L.; Udvardi, M.; Gutjahr, C.

10.1101/754937 — plant biology — Posted on 2019-09-03

3406 Anatomical features, efficient photosystem, and Rubisco activity contribute to high leaf photosynthesis in wild rice

Mathan, J.; Singh, A.; Jathar, V.; Ranjan, A.

10.1101/754887 — plant biology — Posted on 2019-09-03

3407 Morpho-anatomical variation and their phylogenetic implications in native and exotic species of Pinus growing in the Indian Himalayas.

Singh, L.; Dixit, P.; Srivastava, R. P.; Pandey, S. R.; Verma, P. C.; Saxena, G.

10.1101/754804 — plant biology — Posted on 2019-09-03

3408 Evidence for pre-climacteric activation of AOX transcription during cold-induced conditioning to ripen in European pear (Pyrus communis L.)

Hendrikckson, C.; Hewitt, S.; Swanson, M. E.; Einhorn, T.; Dhingra, A.

10.1101/755686 — plant biology — Posted on 2019-09-03

3409 Concomitant phytonutrient and transcriptome analysis of mature fruit and leaf tissues of tomato (Solanum lycopersicum L. cv. Oregon Spring) grown using organic and conventional fertilizer

Sharpe, R.; Gustafson, L.; Hewitt, S.; Kilian, B.; Crabb, J.; Hendrickson, C.; Jiwan, D.; Andrews, P.; Dhingra, A.

10.1101/755769 — plant biology — Posted on 2019-09-03

3410 Loss of AUXIN RESPONSE FACTOR 4 function alters plant growth, stomatal functions and improves tomato tolerance to salinity and water deficit

Bouzroud, S.; Barbosa, M. A. M.; Gasparini, K.; Fahr, M.; Bendaou, N.; Bouzayen, M.; Zsogon, A.; Smouni, A.; Zouine, M.

10.1101/756387 — plant biology — Posted on 2019-09-03

3411 A key role for phosphorylation of PsbH in the biogenesis and repair of photosystem II in Chlamydomonas

Riche, A.; Lefebvre-Legendre, L.; Goldschmidt-Clermont, M.

10.1101/754721 — plant biology — Posted on 2019-09-03

3412 The dual function receptor kinase, OsWAKL21.2, is involved in elaboration of lipaseA/esterase induced immune responses in rice

Malukani, K. K.; Ranjan, A.; Jyothi, H. S.; Patel, H. K.; Sonti, R. V.

10.1101/754234 — plant biology — Posted on 2019-09-03

3413 A lipid code-dependent phosphoswitch directs PIN-mediated auxin efflux in Arabidopsis development

Tan, S.; Zhang, X.; Kong, W.; Yang, X.-L.; Molnar, G.; Friml, J.; Xue, H.-W.

10.1101/755504 — plant biology — Posted on 2019-09-03

3414 Identification of MCM8IP, an interactor of MCM8-9 and RPA1 that promotes homologous recombination and DNA synthesis in response to DNA damage

Huang, J.-W.; Taglialatela, A.; Acharya, A.; Leuzzi, G.; Nambiar, T. S.; Cuella-Martin, R.; Hayward, S. B.; Brunette, G. J.; Anand, R.; Soni, R. K.; Clark, N. L.; Bernstein, K. A.; Cejka, P.; Ciccia, A.

10.1101/751974 — genetics — Posted on 2019-09-03

3415 Bayesian-Maximum-Entropy reweighting of IDPs ensembles based on NMR chemical shifts

Crehuet, R.; Buigues Jorro, P. J.; Salvatella, X.; Lindorff-Larsen, K.

10.1101/689083 — biophysics — Posted on 2019-09-03

3416 Chemotaxis and swarming in differentiated HL60 neutrophil-like cells

Babatunde, K. A.; Wang, X.; Hopke, A.; Mantel, P.-Y.; Irimia, D.

10.1101/714345 — cell biology — Posted on 2019-09-03

3417 Integrative model to coordinate the oligomerization and aggregation mechanisms of CCL5

Chen, Y.-C.; Chen, S.-P.; Li, J.-Y.; Chen, P.-C.; Lee, Y.-Z.; Li, K.-M.; Zarivach, R.; Sun, Y.-J.; Sue, S.-C.

10.1101/755322 — biochemistry — Posted on 2019-09-03

3418 Survival of self-replicating molecules under transient compartmentalization with natural selection

Laurent, G.; Peliti, L.; Lacoste, D.

10.1101/755355 — biophysics — Posted on 2019-09-03

3419 A widespread toxin-antitoxin system exploiting growth control via alarmone signalling

Jimmy, S.; Saha, C. K.; Stavropoulos, C. G.; Oliveira, S. R. A.; Kurata, T.; Garcia-Pino, A.; Hauryliuk, V.; Atkinson, G. C.; Koh, A.; Takada, H.; Tenson, T.; Strahl, H.; Cepauskas, A.

10.1101/575399 — microbiology — Posted on 2019-09-03

3420 Production of Hybrid Rice seeds using environment sensitive genic male sterile (EGMS) and basmati rice lines in Kenya

Nthakanio, P. N.; Kariuki, S. N.

10.1101/755306 — plant biology — Posted on 2019-09-03

3421 Glucocorticoids and cortical decoding in the phobic brain

Schwab, S.; Federspiel, A.; Morishima, Y.; Nakataki, M.; Strik, W.; Wiest, R.; Heinrichs, M.; de Quervain, D.; Soravia, L. M.

10.1101/099697 — neuroscience — Posted on 2019-09-03

3422 MR-TRYX: A Mendelian randomization framework that exploits horizontal pleiotropy to infer novel causal pathways

Cho, Y.; Haycock, P. C.; Sanderson, E.; Gaunt, T. R.; Zheng, J.; Morris, A. P.; Davey Smith, G.; Hemani, G.

10.1101/476085 — bioinformatics — Posted on 2019-09-03

3423 Computational modeling reveals a hydrophobic force-induced pore-forming mechanism for cholesterol-dependent cytolysins

Pang, S.; Yang, J.; Wang, J.

10.1101/754705 — biophysics — Posted on 2019-09-03

3424 Protein network structure enables switching between liquid and gel states

Schmit, J. D.; Bouchard, J. J.; Martin, E. W.; Mittag, T.

10.1101/754952 — biophysics — Posted on 2019-09-03

3425 Impact of peripheral mutations on the access channels of human cytochrome P450 1A2

Ying, B.; Zhong, Y.; Wang, J.

10.1101/754739 — biophysics — Posted on 2019-09-03

3426 Microbiome-wide characterization of post-translational modifications

Cheng, K.; Ning, Z.; Zhang, X.; Mayne, J.; Figeys, D.

10.1101/753996 — bioinformatics — Posted on 2019-09-03

3427 Distinct polysaccharide growth profiles of human intestinal Prevotella copri isolates

Fehlner-Peach, H.; Magnabosco, C.; Raghavan, V.; Scher, J. U.; Tett, A.; Cox, L. M.; Gottsegen, C.; Watters, A.; Wiltshire-Gordon, J. D.; Segata, N.; Bonneau, R.; Littman, D. R.

10.1101/750802 — microbiology — Posted on 2019-09-03

3428 GemSpot: A Pipeline for Robust Modeling of Ligands into CryoEM Maps

Robertson, M. J.; van Zundert, G. C. P.; Borrelli, K.; Skiniotis, G.

10.1101/750778 — biophysics — Posted on 2019-09-03

3429 Symbiotic signalling is at the core of an endophytic Fusarium solani-legume association

Skiada, V.; Avramidou, M.; Bonfante, P.; Genre, A.; PAPADOPOULOU, K.

10.1101/740043 — plant biology — Posted on 2019-09-03

3430 Detecting task-dependent modulation of spatiotemporal module via tensor decomposition: application to kinematics and EMG data for walking and running at various speed

Takiyama, K.; Yokoyama, H.; Kaneko, N.; Nakazawa, K.

10.1101/700872 — neuroscience — Posted on 2019-09-03

3431 A new approach to crop model calibration: phenotyping plus post-processing.

Casadebaig, P.; Debaeke, P.; Wallach, D.

10.1101/605220 — plant biology — Posted on 2019-09-03

3432 Task sharing clubfoot treatment in Latin America: a cross-sectional survey of expert opinions

Martinez, R.; Smythe, T.; Pettitt-Schieber, C.; Everhart, J.; Hyman, J.

10.1101/755298 — systems biology — Posted on 2019-09-02

3433 Non-hierarchical, RhlR-regulated acyl-homoserine lactone quorum sensing in a cystic fibrosis isolate of Pseudomonas aeruginosa

Cruz, R. L.; Asfahl, K. L.; Van den Bossche, S.; Coenye, T.; Crabbe, A.; Dandekar, A. A.

10.1101/755314 — microbiology — Posted on 2019-09-02

3434 Nucleosome positioning sequence patterns as packing or regulatory

Pranckeviciene, E.; Hosid, S.; Liang, N.; Ioshikhes, I.

10.1101/755272 — genomics — Posted on 2019-09-02

3435 The maize Hairy Sheath Frayed1 (Hsf1) mutant alters leaf patterning through increased cytokinin signaling

Muszynski, M. G.; Moss-Taylor, L.; Chudalayandi, S.; Cahill, J. F.; Del-Valle Echevarria, A. R.; Alvarez-Castro, I.; Petefish, A.; Sakakibara, H.; Krivosheev, D. M.; Lomin, S. N.; Romanov, G. A.; Thamotharan, S.; Li, B.; Brugiere, N.

10.1101/743898 — plant biology — Posted on 2019-09-02

3436 Characterization of coral-associated microbial aggregates (CAMAs) within tissues of the coral Acropora hyacinthus

Wada, N.; Ishimochi, M.; Matsui, T.; Pollock, F. J.; Tang, S.-L.; Ainsworth, T. D.; Willis, B. L.; Mano, N.; Bourne, D. G.

10.1101/576488 — microbiology — Posted on 2019-09-02

3437 Variation in Soil Properties under Long-Term Irrigated and Non-Irrigated Cropping and Other Land-Use Systems in Dura Catchment, Northern Ethiopia

Tesfahunegn, G. B.; Gebru, T. A.

10.1101/755256 — ecology — Posted on 2019-09-02

3438 genesorteR: Feature Ranking in Clustered Single Cell Data

Ibrahim, M. M.; Kramann, R.

10.1101/676379 — bioinformatics — Posted on 2019-09-02

3439 Designing Peptides on a Quantum Computer

Mulligan, V. K.; Melo, H.; Merritt, H. I.; Slocum, S.; Weitzner, B. D.; Watkins, A. M.; Renfrew, P. D.; Pelissier, C.; Arora, P. S.; Bonneau, R.

10.1101/752485 — bioengineering — Posted on 2019-09-02

3440 A tripartite flip-flop sleep circuit switches sleep states

Maluck, E.; Busack, I.; Masurat, F.; Besseling, J.; Turek, M.; Bringmann, H.

10.1101/681536 — neuroscience — Posted on 2019-09-02

3441 Post-translational control is sufficient to coordinate membrane synthesis with growth in Escherichia coli

Noga, M. J.; Buke, F.; van den Broek, N. J.; Imholz, N.; Scherer, N.; Bokinsky, G.

10.1101/728451 — microbiology — Posted on 2019-09-02

3442 Comparative pathway enrichment analysis in gastrointestinal cell lines Caco-2, HT-29, HEPG2, and colon fibroblasts using a custom expression panel for tight-junction and cytoskeletal regulatory genes.

Robinson, J.

10.1101/747105 — cell biology — Posted on 2019-09-02

3443 Magainin 2 and PGLa in Bacterial Membrane Mimics I: Peptide-Peptide and Lipid-Peptide Interactions

Pachler, M.; Kabelka, I.; Appavou, M.-S.; Lohner, K.; Vacha, R.; Pabst, G.

10.1101/664359 — biophysics — Posted on 2019-09-02

3444 Functional module detection through integration of single-cell RNA sequencing data with protein-protein interaction networks

Klimm, F.; Toledo, E. M.; Monfeuga, T.; Zhang, F.; Deane, C. M.; Reinert, G.

10.1101/698647 — bioinformatics — Posted on 2019-09-02

3445 Gene set inference from single-cell sequencing data using a hybrid of matrix factorization and variational autoencoders

Lukassen, S.; Ten, F. W.; Eils, R.; Conrad, C.

10.1101/740415 — bioinformatics — Posted on 2019-09-02

3446 Functional properties of habenular neurons are determined by developmental stage and sequential neurogenesis

Fore, S.; Cosacak, M. I.; Diaz Verdugo, C.; Kizil, C.; Yaksi, E.

10.1101/722462 — neuroscience — Posted on 2019-09-02

3447 Single-trial characterization of neural rhythms: potentials and challenges

Kosciessa, J. Q.; Grandy, T. H.; Garrett, D. D.; Werkle-Bergner, M.

10.1101/356089 — neuroscience — Posted on 2019-09-02

3448 Blood, sweat and tears: a review of non-invasive DNA sampling

Lefort, M.-C.; Cruickshank, R. H.; Descovich, K.; Adams, N. J.; Barun, A.; Emami-Khoyi, A.; Ridden, J.; Smith, V. R.; Sprague, R.; Waterhouse, B.; Boyer, S.

10.1101/385120 — ecology — Posted on 2019-09-02

3449 Prototypical pacemaker neurons are immunocompetent cells

Klimovich, A.; Giacomello, S.; Björklund, A.; Faure, L.; Kaucka, M.; Giez, C.; Murillo-Rincon, A. P.; Matt, A.-S.; Crupi, G.; de Anda, J.; Wong, G. C. L.; D'Amato, M.; Adameyko, I.; Bosch, T. C. G.

10.1101/750026 — developmental biology — Posted on 2019-09-02

3450 Obesity and brain topological organization differences throughout the lifespan

Ottino-Gonzalez, J.; Baggio, H. C.; Jurado, M. A.; Segura, B.; Caldu, X.; Prats-Soteras, X.; Tor, E.; Sender-Palacios, M. J.; Miro, N.; Sanchez-Garre, C.; Dadar, M.; Dagher, A.; Garcia Garcia, I.; Garolera, M.

10.1101/685081 — neuroscience — Posted on 2019-09-02

3451 Cell Type-Specific Modulation of Layer 6A Excitatory Microcircuits by Acetylcholine in Rat Barrel Cortex

Yang, D.; Guenter, R.; Qi, G.; Radnikow, G.; Feldmeyer, D.

10.1101/701318 — neuroscience — Posted on 2019-09-02

3452 A freely available, self-calibrating software for automatic measurement of freezing behavior

E. Amorim, F.; C. Moulin, T.; B. Amaral, O.

10.1101/645770 — neuroscience — Posted on 2019-09-02

3453 Assessing metacommunity processes through signatures in spatiotemporal turnover of community composition

Jabot, F.; Laroche, F.; Massol, F.; Arthaud, F.; Crabot, J.; Dubart, M.; Blanchet, S.; Munoz, F.; David, P.; Datry, T.

10.1101/480335 — ecology — Posted on 2019-09-02

3454 The effects of postural threat induced by a virtual environment on performance of a walking balance task.

Boroomand-Tehrani, A.; Huntley, A. H.; Jagroop, D.; Campos, J. L.; Patterson, K. K.; Tremblay, L.; Mansfield, A.

10.1101/752139 — physiology — Posted on 2019-09-02

3455 Patterns and individual differences in the coordination of sympathetic and parasympathetic nervous system activity during rest and acute stress tasks

Weissman, D. G.; Mendes, W. B.

10.1101/753657 — physiology — Posted on 2019-09-02

3456 Sympathetic and parasympathetic involvement in time constrained sequential foraging

Dundon, N. M.; Garrett, N.; Babenko, V.; Cieslak, M.; Daw, N. D.; Grafton, S. T.

10.1101/752493 — physiology — Posted on 2019-09-02

3457 JUUL and Combusted Cigarettes Comparably Impair Endothelial Function

Rao, P.; Liu, J.; Springer, M. L.

10.1101/754069 — pharmacology and toxicology — Posted on 2019-09-02

3458 Perceptual learning of lesions in mammograms induced by response feedback during training

Frank, S. M.; Qi, A.; Ravasio, D.; Sasaki, Y.; Rosen, E.; Watanabe, T.

10.1101/752246 — neuroscience — Posted on 2019-09-02

3459 Neural representation of current and intended task sets during sequential judgements on human faces

Diaz-Gutierrez, P.; Gilbert, S.; Arco, J. E.; Sobrado, A.; Ruz, M.

10.1101/753533 — neuroscience — Posted on 2019-09-02

3460 Dysfunctional and compensatory brain networks underlying math fluency

La, M. A.; Saha, D.; Berman, K. F.; Tan, H. Y.

10.1101/752089 — neuroscience — Posted on 2019-09-02

3461 Adjusting ADJUST: Optimizing the ADJUST Algorithm for Pediatric Data Using Geodesic Nets

Leach, S. C.; Morales, S.; Bowers, M. E.; Buzzell, G. A.; Debnath, R.; Beall, D.; Fox, N. A.

10.1101/753822 — neuroscience — Posted on 2019-09-02

3462 The functional convergence and heterogeneity of social, episodic, and self-referential thought in the default mode network

Wen, T.; Mitchell, D. J.; Duncan, J.

10.1101/753509 — neuroscience — Posted on 2019-09-02

3463 Transient astrocytic Gq signaling underlies remote memory enhancement

Iwai, Y.; Ozawa, K.; Yahagi, K.; Tanaka, M.; Itohara, S.; Hirase, H.

10.1101/753095 — neuroscience — Posted on 2019-09-02

3464 Why is the explicit component of motor adaptation limited in elderly adults?

Orban de Xivry, J.-J.; Vandevoorde, K.

10.1101/753160 — neuroscience — Posted on 2019-09-02

3465 Visual acuity performance level is independent of locomotion

Swain, A. D.; Park, E.; Cheng, Z. Y.; Kowalewski, N.; Sun, A.; Allen, T.; Kuhlman, S. J.

10.1101/750844 — neuroscience — Posted on 2019-09-02

3466 Distinct cellular mediators drive the Janus Faces of Toll-like Receptor 4 regulation of network excitability which impacts working memory performance after brain Injury

Korgaonkar, A. A.; Li, Y.; Guevarra, J.; Pang, K. C.; Santhakumar, V.

10.1101/750869 — neuroscience — Posted on 2019-09-02

3467 Studying cellular functions in bipolar disorder: Are there specific predictors of lithium response?

Paul, P.; Iyer, S.; Nayak, R.; Chellappa, A.; Ambardar, S.; Sud, R.; Sukumaran, S. K.; Purushottam, M.; Jain, S.; ADBS (Accelerator program for Discovery in Brain disorders using Stem cells) consortium, ; Viswanath, B.

10.1101/753574 — neuroscience — Posted on 2019-09-02

3468 The process of Lewy body formation, rather than simply alpha-synuclein fibrillization, is the major driver of neurodegeneration in synucleinopathies

Mahul-Mellier, A.-L.; Burtscher, J.; Maharjan, N.; Weerens, L.; Croisier, M.; Kuttler, F.; Leleu, M.; Knott, G.; Lashuel, H.

10.1101/751891 — neuroscience — Posted on 2019-09-02

3469 State-dependent pontine ensemble dynamics and interactions with cortex across sleep states

Tsunematsu, T.; Patel, A. A.; Onken, A.; Sakata, S.

10.1101/752683 — neuroscience — Posted on 2019-09-02

3470 LTD at amygdalocortical synapses as a novel mechanism for hedonic learning

Haley, M. S.; Bruno, S.; Fontanini, A.; Maffei, A.

10.1101/753590 — neuroscience — Posted on 2019-09-02

3471 Standard multiscale entropy reflects spectral power at mismatched temporal scales: What’s signal irregularity got to do with it?

Kosciessa, J. Q.; Kloosterman, N. A.; Garrett, D. D.

10.1101/752808 — neuroscience — Posted on 2019-09-02

3472 Homeostatic plasticity rules that compensate for cell size are susceptible to channel deletion

Gorur Shandilya, S.; Marder, E.; O'Leary, T.

10.1101/753608 — neuroscience — Posted on 2019-09-02

Kelley, S.; Plass, J.; Bender, A. R.; Polk, T. A.

10.1101/751628 — neuroscience — Posted on 2019-09-02

3474 GDNF/RET signaling pathway activation eliminates Lewy Body pathology in midbrain dopamine neurons

Chmielarz, P.; Er, S.; Konovalova, J.; Bandres, L.; Hlushchuk, I.; Albert, K.; Panhelainen, A.; Luk, K. C.; Airavaara, M.; Domanskyi, A.

10.1101/752899 — neuroscience — Posted on 2019-09-02

3475 Does rehearsal benefit visual memory? The role of semantic associations in the maintenance of intact and phase scrambled scenes.

Reichert Plaska, C.; Arango, A. M.; Ng, K.; Ellmore, T. M.

10.1101/753350 — neuroscience — Posted on 2019-09-02

3476 Genetics and Pathway Analysis of Normative Cognitive Variation in the Philadelphia Neurodevelopmental Cohort

Pai, S.; Hui, S.; Weber, P.; Whitley, O.; Labrie, V.; Baumbach, J.; Bader, G. D.

10.1101/751933 — genomics — Posted on 2019-09-02

3477 Three-dimensional chromatin interactions remain stable upon CAG/CTG repeat expansion

Ruiz Buendia, G. A.; Leleu, M.; Marzetta, F.; Vanzan, L.; Tan, J. Y.; Murr, R.; Marques, A. C.; Baubec, T.; Xenarios, I.; Dion, V.

10.1101/754838 — neuroscience — Posted on 2019-09-02

3478 A supragranular nexus for the effects of neocortical beta events on human tactile perception

Law, R. G.; Pugliese, S.; Shin, H.; Sliva, D.; Lee, S.; Neymotin, S. A.; Moore, C.; Jones, S. R.

10.1101/750992 — neuroscience — Posted on 2019-09-02

3479 Computational Pan-genome Mapping and pairwise SNP-distance improve Detection of Mycobacterium tuberculosis Transmission Clusters

Jandrasits, C.; Kroeger, S.; Haas, W.; Renard, B. Y.

10.1101/752782 — bioinformatics — Posted on 2019-09-02

3480 De novo assembly of a Tibetan genome and identification of novel structural variants associated with high altitude adaptation

Ouzhuluobu, ; He, Y.; Lou, H.; Cui, C.; Deng, L.; Gao, Y.; Zheng, W.; Guo, Y.; Wang, X.; Ning, Z.; Li, J.; Li, B.; Bai, C.; Baimakangzhuo, ; Gonggalanzi, ; Dejiquzong, ; Bianba, ; Duojizhuoma, ; Liu, S.; Wu, T.; Xu, S.; Qi, X.; Su, B.

10.1101/753186 — genomics — Posted on 2019-09-02

3481 Genetic signature of prostate cancer resistant to optimized hK2 targeted alpha-particle therapy

Bicak, M.; Lueckerath, K.; Kalidindi, T.; Strand, S.-E.; Morris, M.; Radu, C.; Damoiseaux, R.; Peekhaus, N.; Ho, A.; Veach, D. V.; Malmborg Hager, A.-C.; Larson, S. M.; Lilja, H.; McDevitt, M. R.; Klein, R. J.; Ulmert, D.

10.1101/754036 — cancer biology — Posted on 2019-09-02

3482 Fucosyltransferase 4 shapes oncogenic glycoproteome to drive metastasis of lung adenocarcinoma

Lu, H.-H.; Lin, S.-Y.; Weng, R. R.; Juan, Y.-H.; Chen, Y.-W.; Hou, H.-H.; Hung, Z.-C.; Oswita, G. A.; Huang, Y.-J.; Shih, J.-Y.; Yu, C.-J.; Tsai, H.-C.

10.1101/752519 — cancer biology — Posted on 2019-09-02

3483 Estimating growth patterns and driver effects in tumor evolution from individual samples

Salichos, L.; Meyerson, W. U.; Warrell, J.; Gerstein, M.

10.1101/753871 — cancer biology — Posted on 2019-09-02

3484 DLC1 is a direct target of activated YAP/TAZ that drives collective migration and sprouting angiogenesis

van der Stoel, M.; Schimmel, L.; Nawaz, K.; van Stalborch, A.-M.; de Haan, A.; Klaus-Bergmann, A.; Valent, E. T.; Koenis, D. S.; van Nieuw Amerongen, G. P.; de Vries, C. J.; de Waard, V.; Gloerich, M.; van Buul, J. D.; Huveneers, S.

10.1101/755389 — cell biology — Posted on 2019-09-02

3485 Glucocorticoids regulate cancer cell dormancy

10.1101/750406 — cancer biology — Posted on 2019-09-02

3486 Extreme intratumour heterogeneity and driver evolution in mismatch repair deficient gastro-oesophageal cancer

von Loga, K.; Woolston, A.; Punta, M.; Barber, L. J.; Griffiths, B.; Semiannikova, M.; Spain, G. J.; Challoner, B.; Fenwick, K.; Schiffmann, H.; Marx, A.; Sauter, G.; Lise, S.; Matthews, N.; Gerlinger, M.

10.1101/755199 — cancer biology — Posted on 2019-09-02

3487 Elicitation of superinfection exclusion by p28 of turnip crinkle virus is separable from its replication function with mutations at specific amino acid residues

Guo, Q.; Zhang, S.; Sun, R.; Yao, X.; Tatineni, S.; Meulia, T.; Qu, F.

10.1101/596767 — molecular biology — Posted on 2019-09-02

3488 IGF1R undergoes active and directed centripetal transport on filopodia upon receptor activation

Krndija, D.; Fairhead, M.

10.1101/754960 — cell biology — Posted on 2019-09-02

3489 Single cell transcriptomics identifies a unique adipocyte population that regulates bone marrow environment

10.1101/754481 — cell biology — Posted on 2019-09-02

3490 Determining organ weight toxicity with Bayesian causal models: Improving on the analysis of relative organ weights

Lazic, S. E.; Semenova, E.; Williams, D.

10.1101/754853 — pharmacology and toxicology — Posted on 2019-09-02

3491 Investigations of the Underlying Mechanisms of HIF-1α and CITED2 Binding to TAZ1

Chu, W.-T.; Chu, X.; Wang, J.

10.1101/755074 — biophysics — Posted on 2019-09-02

3492 Systematic sequencing of chloroplast transcript termini from Arabidopsis thaliana reveals >200 transcription initiation sites and the extensive imprints of RNA-binding proteins and secondary structures

Castandet, B.; Germain, A.; Hotto, A.; Stern, D.

10.1101/621938 — plant biology — Posted on 2019-09-02

3493 Modern clinical Mtb strains leverage the type I IFN pathway for a pro-inflammatory response in the host

Shankaran, D.; Arumugam, P.; Bothra, A.; Gandotra, S.; Rao, V. K.

10.1101/594655 — immunology — Posted on 2019-09-02

3494 A bidirectional network for appetite control in larval zebrafish

Wee, C. L.; Song, E. Y.; Johnson, R. E.; Ailani, D.; Randlett, O.; Kim, J.; Nikitchenko, M.; Bahl, A.; Yang, C.-T.; Ahrens, M. B.; Kawakami, K.; Engert, F.; Kunes, S.

10.1101/631341 — neuroscience — Posted on 2019-09-01

3495 Sequence Characterization Of Glutamate Receptor Genes Of Rat A Vertebrate And Arabidopsis Thaliana A Plant

Sengupta, A.; Pal Choudhury, P.; Chakraborty, S.

10.1101/273334 — systems biology — Posted on 2019-09-01

3496 Mice with GNAO1 R209H Movement Disorder Variant Display Hyperlocomotion Alleviated by Risperidone

Larrivee, C. L.; Feng, H.; Quinn, J. A.; Shaw, V. S.; Leipprandt, J. R.; Demireva, E. Y.; Xie, H.; Neubig, R. R.

10.1101/662031 — neuroscience — Posted on 2019-09-01

3497 Probability of Change in Life: amino acid changes in single nucleotide substitutions

Chan, K. F.; Koukouravas, S.; Yeo, J. Y.; Koh, D. W. S.; Gan, S. K.

10.1101/729756 — molecular biology — Posted on 2019-09-01

3498 Identification of the targets of T cell receptor therapeutic agents and cells by use of a high throughput genetic platform

Gejman, R. S.; Jones, H. F.; Klatt, M. G.; Chang, A. Y.; Oh, C. Y.; Chandran, S. S.; Korontsvit, T.; Zakahleva, V.; Dao, T.; Klebanoff, C. A.; Scheinberg, D. A.

10.1101/267047 — cancer biology — Posted on 2019-09-01

3499 Performance Evaluation of Traditional Signal Processing Methods in Localizing Tursiops truncatus Whistles in a Reverberant Aquatic Environment

Woodward, S.; Magnasco, M.

10.1101/642736 — biophysics — Posted on 2019-09-01

3500 Probing RNA conformational equilibria within the functional cellular context

Ganser, L. R.; Chu, C.-C.; Bogerd, H. P.; Kelly, M. L.; Cullen, B. R.; Al-Hashimi, H. M.

10.1101/634576 — biochemistry — Posted on 2019-09-01

3501 Rats Sniff Off Toxic Air

Chen, H.; Li, X.; Yao, M.

10.1101/739003 — biochemistry — Posted on 2019-09-01

3502 The maize Hairy Sheath Frayed1 (Hsf1) mutant alters leaf patterning through increased cytokinin signaling

10.1101/743898 — plant biology — Posted on 2019-09-01

3503 Machine Source Localization of Tursiops Truncatus Whistle-like Sounds in a Reverberant Aquatic Environment

Woodward, S. F.; Reiss, D.; Magnasco, M.

10.1101/606673 — biophysics — Posted on 2019-09-01

3504 Multi-shanks SiNAPS Active Pixel Sensor CMOS probe: 1024 simultaneously recording channels for high-density intracortical brain mapping

Boi, F.; Perentos, N.; Lecomte, A.; Schwesig, G.; Zordan, S.; Sirota, A.; Berdondini, L.; Angotzi, G. N.

10.1101/749911 — neuroscience — Posted on 2019-09-01

3505 The CTCF Anatomy of Topologically Associating Domains

Nanni, L.; Wang, C.; Manders, F.; Groh, L.; Haro, P.; Oldenkamp, R.; Ceri, S.; Logie, C.

10.1101/746610 — genomics — Posted on 2019-09-01

3506 Proteolytic queues at ClpXP increase antibiotic tolerance

Deter, H. S.; Abualrahi, A. H.; Jadhav, P.; Schweer, E. K.; Ogle, C. T.; Butzin, N.

10.1101/680504 — synthetic biology — Posted on 2019-09-01

3507 RhizoVision Crown: An Integrated Hardware and Software Platform for Root Crown Phenotyping

Seethepalli, A.; Guo, H.; Liu, X.; Griffiths, M.; Almtarfi, H.; Li, Z.; Liu, S.; Zare, A.; Fritschi, F.; Blancaflor, E.; Ma, X.; York, L. M.

10.1101/569707 — plant biology — Posted on 2019-09-01

3508 Machine learnt image processing to predict weight and size of rice kernels

Singh, S. K.; Vidyarthi, S. K.; Tiwari, R.

10.1101/743427 — bioengineering — Posted on 2019-09-01

3509 Combinations of low-level and high-level neural processes account for distinct patterns of context-dependent choice

Spitmaan, M.; Horno, O.; Chu, E.; Soltani, A.

10.1101/508655 — neuroscience — Posted on 2019-09-01

3510 Visual closed-loop dynamics via ocular drift

Gruber, L. Z.; Ahissar, E.

10.1101/539445 — neuroscience — Posted on 2019-09-01

3511 Bridging evolutionary game theory and metabolic models for predicting microbial metabolic interactions

Cai, J.; Tan, T.; Chan, S. H. J.

10.1101/623173 — ecology — Posted on 2019-09-01

3512 High-dose oncogenic PIK3CA drives constitutive cellular stemness through self-sustained TGFβ pathway activation

Madsen, R. R.; Longden, J.; Knox, R. G.; Robin, X.; Völlmy, F.; Macleod, K.; Moniz, L.; Carragher, N.; McGranahan, N.; Linding, R.; Vanhaesebroeck, B.; Semple, R. K.

10.1101/753830 — cancer biology — Posted on 2019-09-01

3513 Multivalent proteins rapidly and reversibly phase-separate upon osmotic cell volume change

Jalihal, A. P.; Pitchiaya, S.; Xiao, L.; Bawa, P.; Jiang, X.; Bedi, K.; Cieslik, M.; Ljungman, M.; Chinnaiyan, A. M.; Walter, N. G.

10.1101/748293 — cell biology — Posted on 2019-09-01

3514 Universal phase behaviors of intracellular lipid droplets

Shimobayashi, S. F.; Ohsaki, Y.

10.1101/741264 — biophysics — Posted on 2019-09-01

3515 Temporary pond loss as a result of pasture abandonment: exploring the social-ecological drivers and consequences on amphibians

Eros, N.; Malos, C.; Horvath, C.; Hartel, T.

10.1101/751248 — ecology — Posted on 2019-09-01

3516 Mathematical model shows how sleep may affect amyloid β fibrillization

Hoore, M.; Khailaie, S.; Montaseri, G.; Mitra, T.; Meyer-Hermann, M.

10.1101/751230 — systems biology — Posted on 2019-09-01

3517 Real brains in virtual worlds: Validating a novel oddball paradigm in virtual reality

Kuziek, J. W. P.; Redman, E. X.; Tayem, A. R.; Burrell, J.; Murray, J.; Reinan, J.; Sipolins, A.; Mathewson, K. E.

10.1101/749192 — neuroscience — Posted on 2019-09-01

3518 KIT ligand protects against both light-induced and genetic photoreceptor degeneration

Li, H.; Lian, L.; Liu, B.; Chen, Y.; Yang, J.; Jian, S.; Zhou, J.; Xu, Y.; Ma, X.; Qu, J.; Hou, L.

10.1101/752030 — neuroscience — Posted on 2019-09-01

3519 SMN-primed ribosomes modulate the translation of transcripts related to Spinal Muscular Atrophy

Lauria, F.; Bernabo, P.; Tebaldi, T.; Groen, E. J.; Perenthaler, E.; Clamer, M.; Maniscalco, F.; Marchioretto, M.; Orri, J.; Dalla Serra, M.; Inga, A.; Quattrone, A.; Gillingwater, T. H.; Viero, G.

10.1101/751701 — neuroscience — Posted on 2019-09-01

3520 Wasting food is disgusting: Evidence from behavioral and neuroimaging study of moral judgment of food-wasting behavior

Marczak, M.; Marchewka, A.; Wypych, M.; Misiak, M.; Drozdziel, D.; Sorokowski, P.; Sorokowska, A.

10.1101/750299 — neuroscience — Posted on 2019-09-01

3521 A semi-automated technique for adenoma quantification in the ApcMin mouse using FeatureCounter

Shepherd, A. L.; Smith, A. A.; Wakelin, K. A.; Kuhn, S.; Yang, J.; Eccles, D. A.; Ronchese, F.

10.1101/754325 — cancer biology — Posted on 2019-09-01

3522 The Developmental Transcriptome of Ae. albopictus, a Major Worldwide Human Disease Vector

Gamez, S.; Antoshechkin, I.; Mendez-Sanchez, S. C.; Akbari, O.

10.1101/753962 — bioinformatics — Posted on 2019-09-01

3523 A neuroendocrine feedback loop in C. elegans males integrates food detection and biological sex to modulate chemoreceptor expression and behavioral flexibility

Wexler, L. R.; Miller, R. M.; Portman, D. S.

10.1101/752238 — neuroscience — Posted on 2019-09-01

3524 Morphometry and feeding behaviour in two sympatric orthopterans in the Kalahari (Namibia): The trait as you like it

Conti, E.; Costa, G.; Mulder, C.

10.1101/751826 — ecology — Posted on 2019-09-01

3525 Time-Resolved Correspondences Between Deep Neural Network Layers and EEG Measurements in Object Processing

Kong, N. C. L.; Kaneshiro, B.; Yamins, D. L. K.; Norcia, A. M.

10.1101/754523 — neuroscience — Posted on 2019-09-01

3526 Robustness and applicability of functional genomics tools on scRNA-seq data

Holland, C. H.; Tanevski, J.; Gleixner, J.; Kumar, M. P.; Mereu, E.; Perales-Paton, J.; Joughin, B. A.; Stegle, O.; Lauffenburger, D. A.; Heyn, H.; Szalai, B.; Saez-Rodriguez, J.

10.1101/753319 — bioinformatics — Posted on 2019-09-01

3527 A metabolic network-based approach for developing feeding strategies for CHO cells to increase monoclonal antibody production

Fouladiha, H.; Marashi, S.-A.; Torkashvand, F.; Mahboudi, F.; Lewis, N.; Vaziri, B.

10.1101/751347 — bioengineering — Posted on 2019-09-01

3528 The challenges of estimating the distribution of flight heights from telemetry or altimetry data

Peron, G.; Calabrese, J.; Duriez, O.; Fleming, C. H.; Garcia-Jimenez, R.; Johnston, A.; Lambertucci, S.; Safi, K.; Shepard, E. L. C.

10.1101/751271 — ecology — Posted on 2019-09-01

3529 Comparison of bibliographic data sources: Implications for the robustness of university rankings

Huang, C.-K.; Neylon, C.; Brookes-Kenworthy, C.; Hosking, R.; Montgomery, L.; Wilson, K.; Ozaygen, A.

10.1101/750075 — scientific communication and education — Posted on 2019-09-01

3530 Musical prediction error responses similarly reduced by predictive uncertainty in musicians and non-musicians

Quiroga-Martinez, D. R.; Hansen, N. C.; Hoejlund, A.; Pearce, M. T.; Brattico, E.; Vuust, P.

10.1101/754333 — neuroscience — Posted on 2019-09-01

3531 Nutritional signals rapidly activate oligodendrocyte differentiation in the adult hypothalamic median eminence

Kohnke, S.; Lam, B.; Buller, S.; Zhao, C.; Nuzzaci, D.; Tadross, J.; Holmqvist, S.; Ridley, K.; Hathaway, H.; Macklin, W.; Yeo, G. S.; Franklin, R. J.; Rowitch, D. H.; Blouet, C.

10.1101/751198 — neuroscience — Posted on 2019-09-01

3532 Sympatric wren-warblers partition acoustic signal space and song perch height

Chitnis, S. S.; Rajan, S.; Krishnan, A.

10.1101/754606 — animal behavior and cognition — Posted on 2019-09-01

3533 Singular manifolds of proteomic drivers to model the evolution of inflammatory bowel disease status

Morilla, I.; Leger, T.; Marah, A.; Pic, I.; Ogier-Denis, E.

10.1101/751289 — systems biology — Posted on 2019-09-01

3534 Google matrix analysis of bi-functional SIGNOR network of protein-protein interactions

Frahm, K. M.; Shepelyansky, D. L.

10.1101/750695 — systems biology — Posted on 2019-09-01

3535 The Meta-Position of Phe4 in Leu-enkephalin Regulates Potency, Selectivity, Functional Activity, and Signaling Bias at the Delta and Mu Opioid Receptors

Cassell, R. J.; Sharma, K. K.; Su, H.; Cummins, B. R.; Cui, H.; Mores, K. L.; Altman, R. A.; van Rijn, R. M.

10.1101/750794 — pharmacology and toxicology — Posted on 2019-09-01

3536 Psilocybin exerts distinct effects on resting state networks associated with serotonin and dopamine in mice

Grandjean, J.; Buehlmann, D.; Buerge, M.; Sigrist, H.; Seifritz, E.; Vollenweider, F. X.; Pryce, C. R.; Rudin, M.

10.1101/751255 — neuroscience — Posted on 2019-09-01

3537 The Role Of HVEM And Its Interaction With BTLA And CD160 In B-Cell Lymphoma Progression

Yago-Diez de Juan, C.

10.1101/754291 — immunology — Posted on 2019-09-01

3538 Methods for broad-scale plant phenology assessments using citizen scientists’ photographs

Barve, V.; Brenskelle, L.; Li, D.; Stucky, B.; Barve, N.; Hantak, M.; McLean, B.; Paluh, D.; Oswald, J.; Belitz, M.; Folk, R. A.; Guralnick, R. P.

10.1101/754275 — ecology — Posted on 2019-09-01

3539 AKT but not MYC promotes reactive oxygen species-mediated cell death in oxidative culture

Zheng, D.; Sussman, J. H.; Jeon, M. P.; Parrish, S. T.; Delfarah, A.; Graham, N. A.

10.1101/754572 — systems biology — Posted on 2019-09-01

3540 Rapid and assured genetic engineering methods applied to Acinetobacter baylyi ADP1 genome streamlining

Suarez, G. A.; Dugan, K. R.; Renda, B. A.; Leonard, S. P.; Gangavarapu, L. S.; Barrick, J. E.

10.1101/754242 — synthetic biology — Posted on 2019-09-01

3541 Mesocorticolimbic circuit mechanisms underlying the effects of ketamine on dopamine: a translational imaging study

Kokkinou, M.; Irvine, E. E.; Bonsall, D. R.; Natesan, S.; Wells, L. A.; Smith, M. A.; Glegola, J.; Paul, E. J.; Tossell, K.; Veronese, M.; Khadayate, S.; Dedic, N.; Hopkins, S. C.; Ungless, M. A.; Withers, D. J.; Howes, O. D.

10.1101/748665 — neuroscience — Posted on 2019-09-01

3542 Node abnormality predicts seizure outcome and relates to long-term relapse after epilepsy surgery

Sinha, N.; Wang, Y.; Silva, N.; Miserocchi, A.; McEvoy, A. W.; de Tisi, J.; Vos, S. B.; Winston, G. P.; Duncan, J. S.; Taylor, P. N.

10.1101/747725 — neuroscience — Posted on 2019-09-01

3543 Staphylococcus aureus can survive in the absence of c-di-AMP upon inactivation of the main glutamine transporter

Zeden, M. S.; Kviatkovski, I.; Chittezham, V. T.; Fey, P. D.; Grundling, A.

10.1101/754309 — microbiology — Posted on 2019-09-01

3544 Life history genomic regions explain differences in Atlantic salmon marine diet specialization

Aykanat, T.; Rasmussen, M.; Ozerov, M.; Niemela, E.; Paulin, L.; Vaha, J.-P.; Hindar, K.; Wennevik, V.; Pedersen, T.; Svenning, M.-A.; Primmer, C. R.

10.1101/754440 — ecology — Posted on 2019-09-01

3545 A test of the socioecological model in female Asian elephants: the effects of food abundance, food distribution, and competitor density on within-clan and between-clan contests

Gautam, H.; Vidya, T. N. C.

10.1101/754515 — ecology — Posted on 2019-09-01

3546 Simultaneously vocalizing Asian barbets adopt different frequencies without coordinating temporal rhythms

Krishnan, A.

10.1101/754580 — animal behavior and cognition — Posted on 2019-09-01

3547 Decoding Odor Mixtures in the Dog Brain: An Awake fMRI Study

Prichard, A.; Chhibber, R.; King, J.; Athanassiades, K.; Spivak, M.; Berns, G. S.

10.1101/754374 — neuroscience — Posted on 2019-09-01

3548 Genetic description of Manania handi and Manania gwilliami

Hanson, M. A.; Westlake, H. E.; Page, L. R.

10.1101/747899 — evolutionary biology — Posted on 2019-09-01

3549 RNF43 truncating mutations mediate a tumour suppressor-to-oncogene switch to drive niche-independent self-renewal in cancer

Spit, M.; Fenderico, N.; Jordens, I.; Radaszkiewicz, T.; Lindeboom, R. G. H.; Bugter, J. M.; Ootes, L.; van Osch, M.; Janssen, E.; Boonekamp, K. E.; Hanakova, K.; Potesil, D.; Zdrahal, Z.; Boj, S. F.; Medema, J. P.; Bryja, V.; Koo, B.-K.; Vermeulen, M.; Maurice, M. M.

10.1101/748574 — cancer biology — Posted on 2019-09-01

3550 Generation of fluorescent cell-derived-matrix to study 3D cell migration

Godeau, A. L.; Delanoe-Ayari, H.; Riveline, D.

10.1101/746941 — biophysics — Posted on 2019-09-01

3551 Undulating changes in human plasma proteome across lifespan are linked to disease

Lehallier, B.; Gate, D.; Schaum, N.; Nanasi, T.; Lee, S. E.; Yousef, H.; Moran Losada, P.; Berdnik, D.; Keller, A.; Verghese, J.; Sathyan, S.; Franceschi, C.; Milman, S.; Barzilai, N.; Wyss-Coray, T.

10.1101/751115 — systems biology — Posted on 2019-09-01

3552 Single cell transcriptome analysis reveals an essential role for Gata2b in hematopoietic lineage decisions in zebrafish

10.1101/753178 — immunology — Posted on 2019-09-01

3553 Gray whale transcriptome reveals longevity adaptations associated with DNA repair, autophagy and ubiquitination

Toren, D.; Kulaga, A.; Jethva, M.; Rubin, E.; Snezhkina, A.; Kudryavtseva, A.; Nowicki, D.; Tacutu, R.; Moskalev, A.; Fraifeld, V.

10.1101/754218 — evolutionary biology — Posted on 2019-09-01

3554 Bayesian analysis of GWAS summary data reveals differential signatures of natural selection across human complex traits and functional genomic categories

Zeng, J.; Xue, A.; Jiang, L.; Lloyd-Jones, L. R.; Wu, Y.; Wang, H.; Zheng, Z.; Yengo, L.; Kemper, K. E.; Goddard, M. E.; Wray, N. R.; Visscher, P. M.; Yang, J.

10.1101/752527 — genetics — Posted on 2019-09-01

Archive, 2019-09