bioRxiv directory

Ghambari, Z.;Nabiuni, M.;Jalali, H.;Karimzadeh, L.

10.1101/161612 — genomics — Posted on 2017-07-10

3 A novel unbiased test for molecular convergent evolution and discoveries in echolocating, aquatic and high-altitude mammals

Marcovitz, A.; Turakhia, Y.; Gloudemans, M.; Braun, B. A.; Chen, H. I.; Bejerano, G.

10.1101/170985 — evolutionary biology — Posted on 2017-07-31

4 Social fluidity mobilizes infectious disease in human and animal populations

Colman, E.; Bansal, S.

10.1101/170266 — epidemiology — Posted on 2017-07-31

5 Automated collection of pathogen-specific diagnostic data for real-time syndromic epidemiological studies

Meyers, L.; Ginocchio, C. C.; Faucett, A. N.; Nolte, F. S.; Gesteland, P. H.; Leber, A.; Janowiak, D.; Donovan, V.; Dien Bard, J.; Spitzer, S.; Stellrecht, K. A.; Salimnia, H.; Selvarangan, R.; Juretschko, S.; Daly, J. A.; Wallentine, J. C.; Lindsey, K.; Moore, F.; Reed, S. L.; Aguero-Rosenfeld, M.; Fey, P. D.; Storch, G. A.; Melnick, S. J.; Cook, C. V.; Nelson, R. K.; Jones, J. D.; Scarpino, S. V.; Althouse, B. M.; Ririe, K. M.; Malin, B. A.; Poritz, M. A.

10.1101/157156 — epidemiology — Posted on 2017-07-31

6 Prdm9 is an Anti-Speciation Gene

Forsdyke, D. R.

10.1101/170860 — evolutionary biology — Posted on 2017-07-31

7 Rap1 acts via multiple mechanisms to position Canoe/Afadin and adherens junctions and mediate apical-basal polarity establishment

Bonello, T.; Perez-Vale, K.; Sumigray, K.; Peifer, M.

10.1101/170977 — developmental biology — Posted on 2017-07-31

8 Forgot what you like? Evidence for hippocampal dependence of value-based decisions

Enkavi, A. Z.; Weber, B.; Zweyer, I.; Wagner, J.; Elger, C. E.; Weber, E. U.; Johnson, E. J.

10.1101/170969 — animal behavior and cognition — Posted on 2017-07-31

9 HOT or not: Examining the basis of high-occupancy target regions

Wreczycka, K.; Franke, V.; Uyar, B.; Wurmus, R.; Akalin, A.

10.1101/107680 — genomics — Posted on 2017-07-31

10 A sensitized mutagenesis screen in Factor V Leiden mice identifies novel thrombosis suppressor loci

Westrick, R. J.; Tomberg, K.; Siebert, A. E.; Zhu, G.; Winn, M. E.; Dobies, S. L.; Manning, S. L.; Brake, M. A.; Cleuren, A.; Hobbls, L. M.; Mishack, L. M.; Johnston, A.; Kotnik, E. N.; Siemieniak, D. R.; Xu, J.; Li, J. Z.; Saunders, T. L.; Ginsburg, D.

10.1101/080432 — genetics — Posted on 2017-07-31

11 Euplotid: A Linux-based platform to physically edit the genome

Borges, D.; Young, R.

10.1101/170159 — biophysics — Posted on 2017-07-31

12 Kinetic Machine Learning Unravels Ligand-Directed Conformational Change of μ Opioid Receptor

Feinberg, E. N.; Farimani, A. B.; Hernandez, C. X.; Pande, V. S.

10.1101/170886 — biophysics — Posted on 2017-07-31

13 A Prototype for Modular Cell Engineering

Wilbanks, B.; Layton, D.; Garcia, S.; Trinh, C.

10.1101/170910 — synthetic biology — Posted on 2017-07-31

14 The discovery potential of RNA processing profiles

Pages, A.; Dotu, I.; Pallares-Albanell, J.; Marti, E.; Guigo, R.; Eyras, E.

10.1101/049809 — genomics — Posted on 2017-07-31

15 Discrete dynamical model of mechanisms determining the relations of biodiversity and stability at different levels of organization of living matter

Bespalov, Y.; Nosov, K.; Kabalyants, P.

10.1101/161687 — systems biology — Posted on 2017-07-31

16 An updated infrageneric classification of the oaks: review of previous taxonomic schemes and synthesis of evolutionary patterns

Denk, T.; Grimm, G. W.; Manos, P. S.; Deng, M.; Hipp, A. L.

10.1101/168146 — plant biology — Posted on 2017-07-31

17 Bayesian Optimisation of Large-Scale Biophysical Networks

Hadida, J.; Sotiropoulos, S. N.; Abeysuriya, R. G.; Woolrich, M. W.; Jbabdi, S.

10.1101/170779 — neuroscience — Posted on 2017-07-31

18 From neurons to voxels - repetition suppression is best modelled by local neural scaling

Alink, A.; Abdulrahman, H.; Henson, R. N.

10.1101/170498 — neuroscience — Posted on 2017-07-31

19 Cortical circuit-based lossless neural integrator for perceptual decision-making

Lee, J. H.; Tsunada, J.; Vijayan, S.; Cohen, Y. E.

10.1101/158865 — neuroscience — Posted on 2017-07-31

20 Estimating Excitatory and Inhibitory Synaptic Conductances from Spike Trains using a Recursive Bayesian Approach

Lankarany, M.

10.1101/170878 — neuroscience — Posted on 2017-07-31

21 Is coding a relevant metaphor for the brain?

Brette, R.

10.1101/168237 — neuroscience — Posted on 2017-07-31

22 A synthetic biology approach to probing nucleosome symmetry

Ichikawa, Y.; Connelly, C. F.; Appleboim, A.; Jacobi, H.; Abshiru, N. A.; Chou, H.-J.; Chen, Y.; Sharma, U.; Zheng, Y.; Thomas, P. M.; Chen, H. V.; Bajaj, V.; Kelleher, N. L.; Friedman, N.; Bolon, D. N.; Rando, O. J.; Kaufman, P. D.

10.1101/170811 — molecular biology — Posted on 2017-07-31

23 Roles of the Brca2 and Wapl complexes with Pds5 in sister chromatid cohesion, cohesin localization, and gene expression

Misulovin, Z.; Pherson, M.; Gause, M.; Mihindukulasuriya, K.; Dorsett, D.

10.1101/170829 — molecular biology — Posted on 2017-07-31

24 The Epstein-Barr Virus miR-BHRF1 microRNAs Regulate Viral Gene Expression in cis

Poling, B. C.; Price, A. M.; Luftig, M. A.; Cullen, B. R.

10.1101/170746 — microbiology — Posted on 2017-07-31

25 Functional consequences of genetic loci associated with intelligence in a meta-analysis of 87,740 individuals

Coleman, J.; Bryois, J.; Gaspar, H. A.; Jansen, P.; Savage, J.; Skene, N.; Plomin, R.; Munoz-Manchado, A.; Linnarsson, S.; Crawford, G.; Hjerling Leffler, J.; Sullivan, P.; Posthuma, D.; Breen, G.

10.1101/170712 — genomics — Posted on 2017-07-31

26 Identification of TMEM230 mutations in familial Parkinson’s disease (response to comments)

Deng, H.-X.; Siddique, T.

10.1101/170852 — genetics — Posted on 2017-07-31

27 Multiple hidden processes complicate phylogenomic inference of deep Basidiomycota relationships

Prasanna, A. N.; Gerber, D.; Teeratas, K.; Aime, M. C.; Doyle, V.; Nagy, L.

10.1101/170696 — evolutionary biology — Posted on 2017-07-31

28 Small GTPases and BAR domain proteins regulate branched actin to make clathrin and dynamin independent endocytic vesicles

Sathe, M.; Muthukrishnan, G.; Rae, J.; Disanza, A.; Thattai, M.; Scita, G.; Parton, R. G.; Mayor, S.

10.1101/170753 — cell biology — Posted on 2017-07-31

29 Polymodal Allosteric Regulation of Type 1 Serine/Threonine Kinase Receptors via a Conserved Electrostatic Lock

Botello-Smith, W. M.; Alsamarah, A.; Chatterjee, P.; Xie, C.; Lacroix, J.; Hao, J.; Luo, Y.

10.1101/170837 — biophysics — Posted on 2017-07-31

30 PyBoost: A parallelized Python implementation of 2D boosting with hierarchies

Greenside, P. G.; Hussami, N.; Chang, J.; Kundaje, A.

10.1101/170803 — bioinformatics — Posted on 2017-07-31

31 gkm-DNN: efficient prediction using gapped k-mer features and deep neural networks

Cao, Z.; Zhang, S.

10.1101/170761 — bioinformatics — Posted on 2017-07-31

32 Refresh my memory: Episodic memory reinstatements intrude on working memory maintenance

Hoskin, A. N.; Bornstein, A. M.; Norman, K. A.; Cohen, J. D.

10.1101/170720 — animal behavior and cognition — Posted on 2017-07-31

33 Opposing spatial gradients of inhibition and neural activity in mouse olfactory cortex

Large, A. M.; Vogler, N. W.; Canto, M. B.; Schick, P.; Oswald, A.-M. M.

10.1101/152975 — neuroscience — Posted on 2017-07-31

34 Are allocentric spatial reference frames compatible with theories of Enactivism?

Konig, S. U.; Goeke, C.; Meilinger, T.; Konig, P.

10.1101/170316 — neuroscience — Posted on 2017-07-31

35 Impact of spatial scale and edge weight on predictive power of cortical thickness networks

Raamana, P. R.; Strother, S. C.

10.1101/170381 — neuroscience — Posted on 2017-07-31

36 Reconsolidation-disruption diminishes spontaneous and stress-induced cocaine seeking

Exton-McGuinness, M. T. J.; Drame, M. L.; Flavell, C. R.; Lee, J. L. C.

10.1101/169839 — neuroscience — Posted on 2017-07-31

37 DNA copy number gains of TCF4 (E2-2) are associated with poor outcome and the activated B-cell-like subtype of diffuse large B-cell lymphoma

Hartert, K.; Tadros, S.; Bouska, A.; Moore, D.; Heavican, T.; Pak, C.; Liu, C. L.; Gentles, A.; Hartmann, E.; Kridel, R.; Ekstrom-Smedby, K.; Juliusson, G.; Klinkebiel, D.; Rosenquist, R.; Gascoyne, R.; Rosenwald, A.; Bast, M.; Vose, J.; Lunning, M.; Greiner, T.; Rodig, S.; Iqbal, J.; Alizadeh, A.; Green, M.

10.1101/170605 — genomics — Posted on 2017-07-31

38 Hidden diversity and macroevolutionary mode of Caulimoviridae uncovered by euphyllophyte paleoviruses

Gong, Z.; Han, G.-Z.

10.1101/170415 — evolutionary biology — Posted on 2017-07-31

39 Species composition and environmental adaptation of indigenous Chinese cattle

Gao, Y.; Gautier, M.; Ding, X.; Zhang, H.; Wang, Y.; Wang, X.; Faruque, M. O.; Li, J.; Ye, S.; Gou, X.; Han, J.; Lenstra, J. A.; Zhang, Y.

10.1101/170449 — evolutionary biology — Posted on 2017-07-31

40 The dynamics of adaptive genetic diversity during the early stages of clonal evolution

Blundell, J. R.; Schwartz, K.; Francois, D.; Fisher, D. S.; Sherlock, G. J.; Levy, S. F.

10.1101/170589 — evolutionary biology — Posted on 2017-07-31

41 Supervised machine learning reveals introgressed loci in the genomes of Drosophila simulans and D. sechellia

Schrider, D.; Ayroles, J.; Matute, D. R.; Kern, A. D.

10.1101/170670 — evolutionary biology — Posted on 2017-07-31

42 Using competition assays to quantitatively model cooperative binding by transcription factors and other ligands

Peacock, J.; Jaynes, J. B.

10.1101/170340 — biochemistry — Posted on 2017-07-31

43 Fundamental limits on dynamic inference from single cell snapshots

Weinreb, C.; Wolock, S.; Tusi, B. K.; Socolovsky, M.; Klein, A. M.

10.1101/170118 — systems biology — Posted on 2017-07-31

44 Anti-mutagenic and synergistic cytotoxic effect of cisplatin and Honey Bee venom on 4T1 invasive mammary carcinoma cell line

Shiassi Arani, F.; Karimzadeh, L.; Ghafoori, M.; Nabiuni, M.

10.1101/168542 — pharmacology and toxicology — Posted on 2017-07-31

45 Identification of single pair of interneurons for bitter taste processing in the Drosophila brain

Bohra, A. A.; Kallman, B. R.; Reichert, H. R.; VijayRaghavan, K.

10.1101/170464 — neuroscience — Posted on 2017-07-31

46 Microbial-host metabolic systems interactions and the gut-brain axis: protective effects of microbial propionate upon the blood-brain barrier

Hoyles, L.; Snelling, T.; Umlai, U.-K.; Nicholson, J. K.; Carding, S. R.; Glen, R. C.; McArthur, S.

10.1101/170548 — neuroscience — Posted on 2017-07-31

47 A parametric texture model based on deep convolutional features closely matches texture appearance for humans

Wallis, T. S. A.; Funke, C. M.; Ecker, A. S.; Gatys, L. A.; Wichmann, F. A.; Bethge, M.

10.1101/165761 — neuroscience — Posted on 2017-07-31

48 Activation of serotonin neurons promotes active exploitation in a probabilistic foraging task

Lottem, E.; Banerjee, D.; Vertechi, P.; Sarra, D.; oude Lohuis, M.; Mainen, Z. F.

10.1101/170472 — neuroscience — Posted on 2017-07-31

49 Increasing suppression of saccade-related transients along the human visual hierarchy

Golan, T.; Davidesco, I.; Meshulam, M.; Groppe, D. M.; Megevand, P.; Yeagle, E. M.; Goldfinger, M. S.; Harel, M.; Melloni, L.; Schroeder, C. E.; Deouell, L. Y.; Mehta, A. D.; Malach, R.

10.1101/124867 — neuroscience — Posted on 2017-07-31

50 Improving the quality of combined EEG-TMS neural recordings: Introducing the ‘Coil Spacer’

Ruddy, K. L.; Woolley, D. G.; Mantini, D.; Balsters, J.; Wenderoth, N.

10.1101/170431 — neuroscience — Posted on 2017-07-31

51 SOD1A4V aggregation alters ubiquitin homeostasis in a cell model of ALS

Farrawell, N. E.; Lambert-Smith, I.; Mitchell, K.; McKenna, J.; McAlary, L.; Ciryam, P.; Vine, K. L.; Saunders, D.; Yerbury, J. J.

10.1101/166165 — molecular biology — Posted on 2017-07-31

52 The global biogeography of amino acid variants within a single SAR11 population is governed by natural selection

Delmont, T. O.; Kiefl, E.; Kilinc, O.; Esen, O. C.; Uysal, I.; Rappe, M. S.; Giovannoni, S.; Eren, A. M.

10.1101/170639 — microbiology — Posted on 2017-07-31

53 Lymphopenic community acquired pneumonia, an unnoticed phenotype associated to mortality in non immuno-suppressed patients: a retrospective cohort study

Bermejo-Martin, J. F.; Cilloniz, C.; Mendez, R.; Almansa, R.; Gabarrus, A.; Ceccato, A.; Torres, A.; Menendez, R.

10.1101/170530 — immunology — Posted on 2017-07-31

54 Linear Assembly of a Human Y Centromere using Nanopore Long Reads

Jain, M.; Olsen, H. E.; Turner, D. J.; Stoddart, D.; Bulazel, K. V.; Paten, B.; Haussler, D.; Willard, H.; Akeson, M.; Miga, K. H.

10.1101/170373 — genomics — Posted on 2017-07-31

55 Challenges and advances for transcriptome assembly in non-model species

Ungaro, A.; Pech, N.; Martin, J.-F.; McCairns, S. R.; Mevy, J.-P.; Chappaz, R.; Gilles, A.

10.1101/084145 — genomics — Posted on 2017-07-31

56 Causal Analyses, Statistical Efficiency And Phenotypic Precision Through Recall-By-Genotype Study Design

Corbin, L. J.; Tan, V. Y.; Hughes, D. A.; Wade, K. H.; Paul, D. S.; Tansey, K. E.; Butcher, F.; Dudbridge, F.; Howson, J. M.; Jallow, M. W.; John, C.; Kingston, N.; Lindgren, C. M.; O'Donavan, M.; O'Rahilly, S.; Owen, M. J.; Palmer, C. N. A.; Pearson, E. R.; Scott, R. A.; van Heel, D. A.; Whittaker, J.; Frayling, T.; Tobin, M. D.; Wain, L. V.; Evans, D. M.; Karpe, F.; McCarthy, M. I.; Danesh, J.; Franks, P. W.; Timpson, N. J.

10.1101/124586 — genetics — Posted on 2017-07-31

57 Ants express risk-adjusted sanitary care

Konrad, M.; Pull, C. D.; Seif, K.; Metzler, S.; Grasse, A. V.; Cremer, S.

10.1101/170365 — evolutionary biology — Posted on 2017-07-31

58 Population and conservation genomics of the world's rarest hyena species, the brown hyena (Parahyena brunnea)

Westbury, M.; Hartmann, S.; Barlow, A.; Wiesel, I.; Leo, V.; Welch, R.; Parker, D. M.; Sicks, F.; Ludwig, A.; Dalen, L.; Hofreiter, M.

10.1101/170621 — evolutionary biology — Posted on 2017-07-31

59 Population turnover reverses classic island biogeography predictions in river-like landscapes

Harvey, E.; Gounand, I.; Fronhofer, E. A.; Altermatt, F.

10.1101/170563 — ecology — Posted on 2017-07-31

60 Opposing effects of floral visitors and soil conditions on the determinants of competitive outcomes maintain species diversity in heterogeneous landscapes

Lanuza, J. B.; Bartomeus, I.; Godoy, O.

10.1101/170423 — ecology — Posted on 2017-07-31

61 Advanced processing and analysis of conventional confocal microscopy generated scanning FCS data

Waithe, D.; Schneider, F.; Chojnacki, J.; Clausen, M. P.; Shrestha, D.; Bernardino de la Serna, J.; Eggeling, C.

10.1101/163766 — biophysics — Posted on 2017-07-31

62 Protein classification using modified n-gram and skip-gram models

Islam, S. M. A.; Heil, B. J.; Kearney, C. M.; Baker, E. J.

10.1101/170407 — bioinformatics — Posted on 2017-07-31

63 RAPID: Real-time image-based autofocus for all wide-field optical microscopy systems

Silvestri, L.; Muellenbroich, M. C.; Costantini, I.; Di Giovanna, A. P.; Sacconi, L.; Pavone, F. S.

10.1101/170555 — bioengineering — Posted on 2017-07-31

64 The High-resolution Timeline of Expression of Ribosomal Protein Genes in Yeast

Li, X.; Chen, G.; Fongang, B.; Homouz, D.; Rowicka, M.; Kudlicki, A.

10.1101/170399 — biochemistry — Posted on 2017-07-31

65 Cell cycle time series gene expression data encoded as cyclic attractors in Hopfield systems

Szedlak, A.; Sims, S.; Smith, N.; Paternostro, G.; Piermarocchi, C.

10.1101/170027 — systems biology — Posted on 2017-07-31

66 Multivariate association between single-nucleotide polymorphisms in Alzgene linkage regions and structural changes in the brain: discovery, refinement and validation

Szefer, E.; Lu, D.; Nathoo, F.; Beg, M. F.; Graham, J.; Alzheimer's Disease Neuroimaging Initiative,

10.1101/088310 — neuroscience — Posted on 2017-07-31

67 dropClust: Efficient clustering of ultra-large scRNA-seq data

Sinha, D.; Kumar, A.; Kumar, H.; Bandyopadhyay, S.; Sengupta, D.

10.1101/170308 — genomics — Posted on 2017-07-31

68 Inferring proteome dynamics during yeast cell cycle using gene expression data

Kuchta, K.; Towpik, J.; Biernacka, A.; Kutner, J.; Kudlicki, A.; Ginalski, K.; Rowicka, M.

10.1101/170332 — bioinformatics — Posted on 2017-07-31

69 Heterochronic Developmental Shifts Underlie Floral Diversity within Jaltomata (Solanaceae)

Kostyun, J. L.; Preston, J. C.; Moyle, L. C.

10.1101/169060 — developmental biology — Posted on 2017-07-30

70 PTSD Blood Transcriptome Mega-Analysis: Shared Inflammatory Pathways Across Biological Sex And Modes Of Trauma

Breen, M. S.; Tylee, D. S.; Maihofer, A. X.; Neylan, T. C.; Mehta, D.; Binder, E.; Chandler, S. D.; Hess, J. L.; Kremen, W. S.; Risbrough, V. B.; Woelk, C. H.; Baker, D. G.; Nievergelt, C. M.; Tsuang, M. T.; Buxbaum, J. D.; Glatt, S. J.

10.1101/123182 — neuroscience — Posted on 2017-07-30

71 Genomics of Mesolithic Scandinavia reveal colonization routes and high-latitude adaptation

Günther, T.; Malmström, H.; Svensson, E.; Omrak, A.; Sanchez-Quinto, F.; Kılınc, G. M.; Krzewinska, M.; Eriksson, G.; Fraser, M.; Edlund, H.; Munters, A. R.; Coutinho, A.; Simoes, L. G.; Vicente, M.; Sjölander, A.; Jansen Sellevold, B.; Jorgensen, R.; Claes, P.; Shriver, M. D.; Valdiosera, C.; Netea, M. G.; Apel, J.; Liden, K.; Skar, B.; Stora, J.; Götherström, A.; Jakobsson, M.

10.1101/164400 — genomics — Posted on 2017-07-30

72 Contemporary evolution of a Lepidopteran species, Heliothis virescens, in response to modern agricultural practices

Fritz, M. L.; DeYonke, A. M.; Papanicolaou, A.; Micinski, S.; Westbrook, J.; Gould, F.

10.1101/103382 — evolutionary biology — Posted on 2017-07-30

73 Local differentiation in the defensive morphology of an invasive zooplankton species is not genetically based

Fiorino, G. E.; McAdam, A. G.

10.1101/098707 — evolutionary biology — Posted on 2017-07-30

74 Cell code: the evolving arrangement of molecules that perpetuates life

Jose, A. M.

10.1101/149294 — developmental biology — Posted on 2017-07-30

75 Compositional Mediation Analysis for Microbiome Studies

Sohn, M. B.; Li, H.

10.1101/149419 — bioinformatics — Posted on 2017-07-30

76 Maize leaf functional responses to drought episode and rewatering

Song, H.; Li, Y.; Zhou, L.; Xu, Z.; Zhou, G.

10.1101/170258 — plant biology — Posted on 2017-07-30

77 Harnessing the Cross-talk between Tumor Cells and Tumor-associated Macrophages with a Nano-drug for modulation of Glioblastoma Immune Microenvironment

Li, T.-F.; Li, K.; Wang, C.; Liu, X.; Wen, Y.; Xu, Y.-H.; Zhang, Q.; Zhao, Q.-Y.; Shao, M.; Li, Y.-Z.; Han, M.; Komatsu, N.; Zhao, L.; Chen, X.

10.1101/170282 — pharmacology and toxicology — Posted on 2017-07-30

78 Exploring repositioning opportunities and side-effects of statins: a Mendelian randomization study of HMG-CoA reductase inhibition with 55 complex traits

So, H.-C.

10.1101/170241 — genetics — Posted on 2017-07-30

79 Single-molecule force spectroscopy of protein-membrane interactions

Ma, L.; Cai, Y.; Li, Y.; Jiao, J.; Wu, Z.; O'Shaughnessy, B.; Karatekin, E.; De Camilli, P.; Zhang, Y.

10.1101/170290 — biophysics — Posted on 2017-07-30

80 HapCHAT: Adaptive haplotype assembly for efficiently leveraging high coverage in long reads

Beretta, S.; Patterson, M.; Zaccaria, S.; Della Vedova, G.; Bonizzoni, P.

10.1101/170225 — bioinformatics — Posted on 2017-07-30

81 Automatic OpenAPI to Bio.tools Conversion

Willighagen, E.; Melius, J.

10.1101/170274 — bioinformatics — Posted on 2017-07-30

82 Flipping the odds of drug development success through human genomics

Hingorani, A. D.; Kuan, V.; Finan, C.; Kruger, F. A.; Gaulton, A.; Chopade, S.; Sofat, R.; MacAllister, R. J.; Overington, J.; Hemingway, H.; Denaxas, S.; Prieto-Merino, D.; Casas, J. P.

10.1101/170142 — genomics — Posted on 2017-07-30

83 Chitosan perception in Arabidopsis requires the chitin receptor AtCERK1 suggesting an improved model for receptor structure and function

Gubaeva, E.; Gubaev, A.; Melcher, R.; Cord-Landwehr, S.; Singh, R.; El Gueddari, N. E.; Moerschbacher, B. M.

10.1101/170092 — biochemistry — Posted on 2017-07-30

84 Social learning strategies for matters of taste

Analytis, P. P.; Barkoczi, D.; Herzog, S. M.

10.1101/170191 — animal behavior and cognition — Posted on 2017-07-30

85 Fundamental limits on dynamic inference from single cell snapshots

Weinreb, C.; Wolock, S.; Tusi, B. K.; Socolovsky, M.; Klein, A. M.

10.1101/170118 — systems biology — Posted on 2017-07-30

86 3’UTR Remodelling of Axonal Transcripts in Sympathetic Neurons

Andreassi, C.; Luisier, R.; Crerar, H.; Franke, S.; Luscombe, N. M.; Cuda, G.; Gaspari, M.; Riccio, A.

10.1101/170100 — neuroscience — Posted on 2017-07-30

87 Towards an Unconscious Neurotherapy for Common Fears

Taschereau-Dumouchel, V.; Cortese, A.; Chiba, T.; Knotts, J. D.; Kawato, M.; Lau, H.

10.1101/170183 — neuroscience — Posted on 2017-07-30

88 Thalamocortical transmission of visual information in awake mice involves phase synchronization and spike synchrony at high gamma frequencies

McAfee, S. S.; Liu, Y.; Dhamala, M.; Heck, D. H.

10.1101/170167 — neuroscience — Posted on 2017-07-30

89 The ANTs Longitudinal Cortical Thickness Pipeline

Tustison, N. J.; Holbrook, A. J.; Avants, B. B.; Roberts, J. M.; Cook, P. A.; Reagh, Z. M.; Stone, J. R.; Gillen, D. L.; Yassa, M. A.

10.1101/170209 — neuroscience — Posted on 2017-07-30

90 The contribution of genetic variation of Streptococcus pneumoniae to the clinical manifestation of invasive pneumococcal disease

Cremers, A. J. H.; Mobegi, F. M.; van der Gaast-de Jongh, C.; Van Weert, M.; van Opzeeland, F.; Vehkala, M.; Knol, M. J.; Bootsma, H. J.; Valimaki, N.; Meis, J. F.; Bentley, S.; van Hijum, S. A. F. T.; Corander, J.; Zomer, A. L.; Ferwerda, G.; de Jonge, M. I.

10.1101/169722 — microbiology — Posted on 2017-07-30

91 Nanopore sequencing of full-length BRCA1 mRNA transcripts reveals co-occurrence of known exon skipping events

de Jong, L.; Cree, S.; Lattimore, V.; Wiggins, G.; Spurdle, A.; kConFab Investigators, ; Miller, A.; Kennedy, M. A.; Walker, L. C.

10.1101/169755 — genomics — Posted on 2017-07-30

92 miRNAtools: advanced training using the miRNA web of knowledge

Enguita, F. J.

10.1101/170126 — bioinformatics — Posted on 2017-07-30

93 Drosophila embryonic type II neuroblasts: origin, temporal patterning, and contribution to the adult central complex

Walsh, K. T.; Doe, C. Q.

10.1101/170043 — developmental biology — Posted on 2017-07-30

94 De novo Clustering Nanopore Long Reads of Transcriptomics Data by Gene

Marchet, C.; Lecompte, L.; Da Silva, C.; Cruaud, C.; Aury, J. M.; Nicolas, J.; Peterlongo, P.

10.1101/170035 — bioinformatics — Posted on 2017-07-30

95 Cerebellar learning using perturbations

Bouvier, G.; Aljadeff, J.; Clopath, C.; Bimbard, C.; Nadal, J.-P.; Brunel, N.; Hakim, V.; Barbour, B.

10.1101/053785 — neuroscience — Posted on 2017-07-29

96 A transcallosal fiber network between left and right homotopic inferior frontal regions supports complex linguistic processing

Kellmeyer, P.; Vry, M.-S.; Ball, T.

10.1101/079244 — neuroscience — Posted on 2017-07-29

97 SMC Progressively Aligns Chromosomal Arms In Caulobacter crescentus But Is Antagonized By Convergent Transcription

Tran, N. T.; Laub, M. T.; Le, T. B. K.

10.1101/125344 — microbiology — Posted on 2017-07-29

98 Genome variation and conserved regulation identify genomic regions responsible for strain specific phenotypes in rat

Martin-Galvez, D.; Dunoyer de Segonzac, D.; Ma, M. C. J.; Kwitek, A. E.; Thybert, D.; Flicek, P.

10.1101/169748 — genomics — Posted on 2017-07-29

99 Selection On Morphological Traits And Fluctuating Asymmetry By A Fungal Parasite In The Yellow Dung Fly

Blanckenhorn, W. U.

10.1101/136325 — evolutionary biology — Posted on 2017-07-29

100 Restoration of Eastern oyster populations with positive density dependence

Moore, J.; Puckett, B.; Schreiber, S. J.

10.1101/169540 — ecology — Posted on 2017-07-29

101 Human microcephaly ASPM protein is a spindle pole-focusing factor that functions redundantly with CDK5RAP2

Tungadi, E. A.; Ito, A.; Kiyomitsu, T.; Goshima, G.

10.1101/102236 — cell biology — Posted on 2017-07-29

102 Enzyme-Free Nucleic Acid Dynamical Systems

Srinivas, N.; Parkin, J.; Seelig, G.; Winfree, E.; Soloveichik, D.

10.1101/138420 — bioengineering — Posted on 2017-07-29

103 Interplay of cis and trans mechanisms driving transcription factor binding and gene expression evolution

Wong, E. S.; Schmitt, B. M.; Kazachenka, A.; Thybert, D.; Redmond, A.; Connor, F.; Rayner, T. F.; Feig, C.; Ferguson-Smith, A. C.; Marioni, J. C.; Odom, D. T.; Flicek, P.

10.1101/059873 — genomics — Posted on 2017-07-29

104 The white gene controls copulation success in Drosophila melanogaster

Xiao, C.; Qiu, S.; Robertson, R. M.

10.1101/072710 — animal behavior and cognition — Posted on 2017-07-29

105 The Na+(K+)/H+ exchanger Nhx1 controls multivesicular body-vacuolar lysosome fusion

Karim, M. A.; Brett, C.

10.1101/170175 — cell biology — Posted on 2017-07-29

106 Estrogen represses Tgfbr1 and Bmpr1a expression via estrogen receptor beta in MC3T3-E1 cells

He, H.; Wang, C.; Tang, Q.; Yang, F.; Xu, Y.

10.1101/170084 — biochemistry — Posted on 2017-07-29

107 Notes On Synthesis Of Perdeutero-5-13C,5,5,5-Trifluoroisoleucine VI

Naugler, D.; Prosser, R. S.

10.1101/140681 — molecular biology — Posted on 2017-07-28

108 sNucDrop-Seq: Dissecting cell-type composition and neuronal activity state in mammalian brains by massively parallel single-nucleus RNA-Seq

Hu, P.; Fabyanic, E.; Zhou, Z.; Wu, H.

10.1101/154476 — genomics — Posted on 2017-07-28

109 Epidemiology and antimicrobial resistance characteristics of the ST131-H30 subclone among extraintestinal Escherichia coli collected from US children

Miles-Jay, A.; Weissman, S. J.; Adler, A. L.; Tchesnokova, V.; Sokurenko, E. V.; Baseman, J. G.; Zerr, D. M.

10.1101/122416 — epidemiology — Posted on 2017-07-28

110 EMHP: An accurate automated hole masking algorithm for single-particle cryo-EM image processing

Berndsen, Z.; Bowman, C.; Jang, H.; Ward, A. B.

10.1101/154211 — bioinformatics — Posted on 2017-07-28

111 Molecular characterization of latent GDF8 reveals mechanisms of activation

Walker, R. G.; McCoy, J. C.; Czepnik, M.; Mills, M. J.; Hagg, A.; Walton, K. L.; Cotton, T.; Hyvonen, M.; Lee, R. T.; Gregorevic, P.; Harrison, C. A.; Thompson, T.

10.1101/155614 — biochemistry — Posted on 2017-07-28

112 Identifying the dynamic contact network of infectious disease spread

Sah, P.; Bansal, S.

10.1101/169573 — epidemiology — Posted on 2017-07-28

113 Redesigning chromosomes to optimize conformation capture (Hi-C) assays

Muller, H.; Scolari, V.; Mercy, G.; Agier, N.; Descorps-Declere, S.; Fischer, G.; Mozziconacci, J.; Koszul, R.

10.1101/169847 — synthetic biology — Posted on 2017-07-28

114 Neuronal origin of the temporal dynamics of spontaneous BOLD activity correlation

Matsui, T.; Murakami, T.; Ohki, K.

10.1101/169698 — neuroscience — Posted on 2017-07-28

115 Decline of auditory-motor speech processing in older adults with hearing loss

Panouilleres, M.; Mottonen, R.

10.1101/169235 — neuroscience — Posted on 2017-07-28

116 Efficient hydrogen-dependent carbon dioxide reduction by Escherichia coli

Roger, M.; Brown, F.; Gabrielli, W.; Sargent, F.

10.1101/169854 — microbiology — Posted on 2017-07-28

117 Antisense transcriptional interference mediates condition-specific gene repression in budding yeast

Nevers, A.; Doyen, A.; Malabat, C.; Neron, B.; Kergrohen, T.; Jacquier, A.; Badis, G.

10.1101/169730 — genomics — Posted on 2017-07-28

118 Mechanistic view and genetic control of DNA recombination during meiosis

Marsolier-Kergoat, M.-C.; Khan, M. M.; Schott, J.; Zhu, X.; Llorente, B.

10.1101/169870 — genetics — Posted on 2017-07-28

119 How evolution draws trade-offs

Bourg, S.; Jacob, L.; Menu, F.; Rajon, E.

10.1101/169904 — evolutionary biology — Posted on 2017-07-28

120 riboWaltz: optimization of ribosome P-site positioning in ribosome profiling data

Lauria, F.; Tebaldi, T.; Bernabo, P.; Groen, E. J. N.; Gillingwater, T. H.; Viero, G.

10.1101/169862 — bioinformatics — Posted on 2017-07-28

121 Biphasic, Switch-Like Isothermal DNA Amplification

Ozay, B.; Robertus, C. M.; Negri, J. L.; McCalla, S.

10.1101/169805 — bioengineering — Posted on 2017-07-28

122 Assaying uptake of endocrine disruptor compounds in zebrafish embryos and larvae

Souder, J. P.; Gorelick, D. A.

10.1101/169987 — pharmacology and toxicology — Posted on 2017-07-28

123 Intrinsically photosensitive retinal ganglion cell mediated pupil function is impaired in Parkinson’s disease

Joyce, D. S.; Feigl, B.; Kerr, G.; Roeder, L.; Zele, A. J.

10.1101/169946 — neuroscience — Posted on 2017-07-28

124 The nucleoid as a scaffold for the assembly of bacterial signaling complexes

Moine, A.; Espinosa, L.; Martineau, E.; Byrne, D.; Biondi, E. G.; Notomista, E.; Brilli, M.; Molle, V.; Mignot, T.; Mauriello, E. M.

10.1101/169912 — microbiology — Posted on 2017-07-28

125 Anticipating complexity in the deployment of gene drive insects in agriculture

Baltzegar, J.; Cavin Barnes, J.; Elsensohn, J. E.; Gutzmann, N.; Jones, M. S.; King, S.; Sudweeks, J.

10.1101/169938 — ecology — Posted on 2017-07-28

126 Image velocimetry and spectral analysis enable quantitative characterization of larval zebrafish gut motility

Ganz, J.; Baker, R. P.; Hamilton, M. K.; Melancon, E.; Diba, P.; Eisen, J. S.; Parthasarathy, R.

10.1101/169979 — developmental biology — Posted on 2017-07-28

127 Loss Of PTEN Promotes Formation Of Signaling-Capable Clathrin-Coated Pits

Rosselli-Murai, L. K.; Yates, J. A.; Yoshida, S.; Bourg, J. T.; Ho, K. K. Y.; White, M.; Prisby, J.; Tan, X.; Altemus, M.; Bao, L.; Wu, Z.-F.; Veatch, S. L.; Swanson, J. A.; Merajver, S. D.; Liu, A. P.

10.1101/137760 — cell biology — Posted on 2017-07-28

128 RNA structure inference through chemical mapping after accidental or intentional mutations

Cheng, C.; Kladwang, W.; Yesselman, J.; Das, R.

10.1101/169953 — biochemistry — Posted on 2017-07-28

129 Genomics-enabled analysis of the emergent disease cotton bacterial blight

Phillips, A. Z.; Berry, J. C.; Wilson, M. C.; Vijayaraghavan, A.; Burke, J.; Bunn, J. I.; Allen, T. W.; Wheeler, T.; Bart, R.

10.1101/127670 — plant biology — Posted on 2017-07-28

130 Response to Editas and Intellia: Unexpected mutations after CRISPR-Cas9 editing in vivo

Schaefer, K. A.; Wu, W.-H.; Darbro, B. W.; Colgan, D. F.; Tsang, S. H.; Bassuk, A. G.; Mahajan, V. B.

10.1101/154450 — bioengineering — Posted on 2017-07-28

131 Genome variation and conserved regulation identify genomic regions responsible for strain specific phenotypes in rat

Martin-Galvez, D.; Dunoyer-de-Segonzac, D.; Ma, M. C. J.; Kwitek, A. E.; Thybert, D.; Flicek, P.

10.1101/169748 — genomics — Posted on 2017-07-28

132 Tropomyosin and a-actinin cooperation inhibits fimbrin association with actin filament networks in fission yeast

Christensen, J.; Homa, K.; O'Connell, M.; Kovar, D. R.

10.1101/169961 — cell biology — Posted on 2017-07-28

133 Development of a targeted sequencing approach to identify prognostic, predictive and diagnostic markers in paediatric solid tumours

Izquierdo, E.; Yuan, L.; George, S.; Hubank, M.; Jones, C.; Proszek, P.; Shipley, J.; Gatz, S. A.; Stinson, C.; Moore, A. S.; Clifford, S. C.; Hicks, D.; Lindsey, J.; Hill, R.; Jacques, T. S.; Chalker, J.; Thway, K.; O'Connor, S.; Marshall, L.; Moreno, L.; Pearson, A. D. J.; Chesler, L.; Walker, B. A.; Gonzalez De Castro, D.

10.1101/165746 — genomics — Posted on 2017-07-28

134 Exploring the limits of learning: segregation of information integration and response selection is required for learning a serial reversal task

Mininni, C. J.; Zanutto, B. S.

10.1101/163725 — neuroscience — Posted on 2017-07-28

135 Very low depth whole genome sequencing in complex trait association studies

Gilly, A.; Kuchenbaecker, K.; Southam, L.; Suveges, D.; Moore, R.; Melloni, G.; Hatzikotoulas, K.; Farmaki, A.-E.; Ritchie, G.; Schwartzentruber, J.; Danecek, P.; Kilian, B.; Pollard, M.; Ge, X.; Elding, H.; Astle, W.; Jiang, T.; Butterworth, A.; Soranzo, N.; Tsafantakis, E.; Karaleftheri, M.; Dedoussis, G.; Zeggini, E.

10.1101/169789 — genetics — Posted on 2017-07-28

136 GDSCTools for Mining Pharmacogenomic Interactions in Cancer

Cokelaer, T.; Chen, E.; Iorio, F.; Menden, M. P.; Lightfoot, H.; Saez-Rodriguez, J.; Mathew, G. J.

10.1101/166223 — cancer biology — Posted on 2017-07-28

137 Glioma CpG Island Methylator Phenotype (G-CIMP): Biological and Clinical Implications

Malta, T. M.; Souza, C. F.; Sabedot, T. S.; Silva, T. C.; Mosella, M. Q. S.; Kalkanis, S. N.; Snyder, J.; Castro, A. V. B.; Noushmehr, H.

10.1101/169680 — cancer biology — Posted on 2017-07-28

138 PhaMers identifies novel bacteriophage sequences from thermophilic hot springs

Deaton, J.; Yu, F.; Quake, S.

10.1101/169672 — bioinformatics — Posted on 2017-07-28

139 Structure of the human pro-myostatin precursor and determinants of growth factor latency

Cotton, T. R.; Fischer, G.; Wang, X.; McCoy, J. C.; Czepnik, M.; Thompson, T. B.; Hyvonen, M.

10.1101/153403 — biochemistry — Posted on 2017-07-28

140 Double-digest RAD sequencing outperforms microsatellite loci at assigning paternity and estimating relatedness: a proof of concept in a highly promiscuous bird

Thrasher, D. J.; Butcher, B. G.; Campagna, L.; Webster, M. S.; Lovette, I. J.

10.1101/169144 — animal behavior and cognition — Posted on 2017-07-28

141 Emphasizing the ‘positive’ in positive reinforcement: Using non-binary rewarding for training monkeys on cognitive tasks

Fischer, B.; Wegener, D.

10.1101/169201 — animal behavior and cognition — Posted on 2017-07-28

142 Computational design of Small Transcription Activating RNAs (STARs) for versatile and dynamic gene regulation

Chappell, J.; Westbrook, A.; Verosloff, M.; Lucks, J.

10.1101/169391 — synthetic biology — Posted on 2017-07-28

143 Parallel loss of symbiosis genes in relatives of nitrogen-fixing non-legume Parasponia

Van Velzen, R.; Holmer, R.; Bu, F.; Rutten, L.; Van Zeijl, A.; Liu, W.; Santuari, L.; Cao, Q.; Sharma, T.; Shen, D.; Roswanjaya, Y.; Wardhani, T.; Seifi Kalhor, M.; Jansen, J.; Van den Hoogen, J.; Gungor, B.; Hartog, M.; Hontelez, J.; Verver, J.; Yang, W.-C.; Schijlen, E.; Repin, R.; Schilthuizen, M.; Schranz, E.; Heidstra, R.; Miyata, K.; Fedorova, E.; Kohlen, W.; Bisseling, T.; Smit, S.; Geurts, R.

10.1101/169706 — plant biology — Posted on 2017-07-28

144 Paradoxical Associations Between Higher Familial Warmth, Lower Stress, And Increased Amygdala Reactivity To Interpersonal Threat

Farber, M. J.; Romer, A. L.; Kim, J. M.; Knodt, A. R.; Elsayed, N.; Williamson, D. E.; Hariri, A. R.

10.1101/169383 — neuroscience — Posted on 2017-07-28

145 Robust Averaging Protects Decisions from Noise in Neural Computations

Li, V. L.; Herce Castanon, S.; Solomon, J. A.; Vandormael, H.; Summerfield, C.

10.1101/147744 — neuroscience — Posted on 2017-07-28

146 Altered Expression Of A Unique Set Of Genes Reveals Complex Etiology Of Schizophrenia

Kumar, A.; Singh, H. N.; Pareek, V.; Raza, K.; Kumar, P.; Faiq, M. A.; Mochan, S.; Dantham, S.; Upadhyaya, A. D.

10.1101/131623 — neuroscience — Posted on 2017-07-28

147 Translational regulation by bacterial small RNAs via an unusual Hfq-dependent mechanism

Azam, M. S.; Vanderpool, C. K.

10.1101/169359 — microbiology — Posted on 2017-07-28

148 Primary souring: a novel bacteria-free method for sour beer production

Osburn, K.; Amaral, J.; Metcalf, S. R.; Nickens, D. M.; Rogers, C. M.; Sausen, C.; Caputo, R.; Miller, J.; Li, H.; Tennessen, J. M.; Bochman, M. L.

10.1101/121103 — microbiology — Posted on 2017-07-28

149 Genetics of vaccination-related narcolepsy

Ollila, H. M.; Wennerstrom, A.; Partinen, M.; Mignot, E.; Saarela, J.; Kirjavainen, T.; Hublin, C.; Schneider, L. D.; Himanen, S.-L.; Saarenpaa-Heikkila, O.; Saavalainen, P.; Tienari, P. J.; Vaarala, O.; Perola, M.

10.1101/169623 — genetics — Posted on 2017-07-28

150 116 independent genetic variants influence the neuroticism personality trait in over 329,000 UK Biobank individuals.

Luciano, M.; Hagenaars, S. P.; Davies, G.; Hill, W. D.; Clarke, T.-K.; Shirali, M.; Marioni, R.; Harris, S. E.; Liewald, D. C.; Fawns-Ritchie, C.; Adams, M. J.; Howard, D. M.; Lewis, C. M.; Gale, C. R.; McIntosh, A. M.; Deary, I. J.

10.1101/168906 — genetics — Posted on 2017-07-28

151 Identification And Characterization Of Domesticated Bacterial Transposases

Bertels, F.; Gallie, J.; Rainey, P. B.

10.1101/119735 — evolutionary biology — Posted on 2017-07-28

152 Insulin Does Not Augment In Vitro Tumor Growth Under A Hyperglycemia-Mimicking Milieu And In A Calorie Restriction-Resembling Manner

Liao, T.; Li, X.-H.; Chen, Y.-P.; Tan, L.-L.; Zhang, J.-D.; Huang, X.-A.; Xu, Q.; Huang, S.-Q.; Li, C.-Q.; Zeng, Q.-P.

10.1101/169664 — cancer biology — Posted on 2017-07-28

153 Recasting the cancer stem cell hypothesis: unification using a continuum model of microenvironmental forces

Scott, J. G.; Dhawan, A.; Hjelmeland, A.; Lathia, J.; Hitomi, M.; Fletcher, A. G.; Maini, P. K.; Anderson, A. R. A.

10.1101/169615 — cancer biology — Posted on 2017-07-28

154 A Framework to Simulate Cortical microtubule Dynamics inArbitrary Shaped Plant Cells

Chakrabortty, B.; Scheres, B.; Mulder, B.

10.1101/169797 — systems biology — Posted on 2017-07-28

155 Conventional and hyperspectral time-series imagingof maize lines widely used in field trials

Liang, Z.; Pandey, P.; Stoerger, V.; Xu, Y.; Qiu, Y.; Ge, Y.; Schnable, J. C.

10.1101/169045 — plant biology — Posted on 2017-07-28

156 Endogenous synthesis of pyrethrins by cannabis

Devitt-Lee, A.; Smith, D.; Chen, D.; McKernan, K.; Groves, S.; McCarthy, C.

10.1101/169417 — plant biology — Posted on 2017-07-28

157 Restoration of Eastern oyster populations with positive density dependence

Moore, J.; Schreiber, S. J.

10.1101/169540 — ecology — Posted on 2017-07-28

158 A molecular dynamics investigation of CDK8/CycC and ligand binding: conformational flexibility and implication in drug discovery

Chen, W.; Tang, Z.; Cholko, T.; Chang, C.-e.

10.1101/169581 — biophysics — Posted on 2017-07-28

159 Energy Barriers, Molecular Motions, and Residence Time in Ligand Dissociation: A Computational Study on Type II Inhibitors Binding to CDK8/CycC

Tang, Z.; Chang, C.-e.

10.1101/169607 — biophysics — Posted on 2017-07-28

160 A QM/MM Study of Biomimetic Catalysis of Diels-Adler reactions Using Cyclodextrins

Chen, W.; Sun, L.; Tang, Z.; Chang, C.-e.

10.1101/169565 — biophysics — Posted on 2017-07-28

161 Evaluating the accuracy of the umbrella sampling plots with different dissociation paths, conformational changes, and structure preparation

You, W.; Tang, Z.; Chang, C.-e.

10.1101/169532 — biophysics — Posted on 2017-07-28

162 Creating a highly directional anti-tumor immunity

Buts, V. A.; Skibenko, K. P.

10.1101/169227 — biophysics — Posted on 2017-07-28

163 Identification of disease resistance genes from a Chinese wild grapevine (Vitis davidii) by analysing grape transcriptomes and transgenic Arabidopsis

Zhang, Y.; Yao, J.-L.; Feng, H.; Jiang, J.; Fan, X.; Sun, H.; Jia, Y.-F.; Zhu, Y.; Wang, R.; Liu, C.

10.1101/169631 — molecular biology — Posted on 2017-07-28

164 HPCDb: an integrated database of pancreatic cancer

Tan, Y.; Tan, Y.; Lu, L.; Zhang, H.; Sun, C.; Liang, Y.; Zeng, J.; Yang, X.; Li, D.; Zou, H.

10.1101/169771 — bioinformatics — Posted on 2017-07-28

165 Evolving Bacterial Fitness with an Expanded Genetic Code

Tack, D.; Cole, A.; Shroff, R.; Morrow, B. R.; Ellington, A.

10.1101/169409 — evolutionary biology — Posted on 2017-07-28

166 Computational design of Small Transcription Activating RNAs (STARs) for versatile and dynamic gene regulation

Chappell, J.; Westbrook, A.; Verosloff, M.; Lucks, J.

10.1101/169391 — synthetic biology — Posted on 2017-07-28

167 Rapid and scalable characterization of CRISPR technologies using an E. coli cell-free transcription-translation system

Marshall, R.; Maxwell, C. S.; Collins, S. P.; Luo, M. L.; Jacobsen, T.; Beisel, C.; Noireaux, V.

10.1101/169441 — synthetic biology — Posted on 2017-07-28

168 Comprehensive Characterization of Toxicity of Fermentative Metabolites on Microbial Growth

Wilbanks, B.; Trinh, C. T.

10.1101/169482 — physiology — Posted on 2017-07-28

169 Rule Activation and Ventromedial Prefrontal Engagement Support Accurate Stopping in Self-Paced Learning

O'Bryan, S.; Walden, E.; Serra, M. J.; Davis, T.

10.1101/169110 — neuroscience — Posted on 2017-07-28

170 Discrete confidence levels revealed by sequential decisions

Lisi, M.; Mongillo, G.; Gorea, A.

10.1101/169243 — neuroscience — Posted on 2017-07-28

171 Convis: A Toolbox To Fit and Simulate Filter-based Models of Early Visual Processing

Huth, J.; Masquelier, T.; Arleo, A.

10.1101/169284 — neuroscience — Posted on 2017-07-28

172 Vibrio cholerae genomic diversity within and between patients

Levade, I.; Terrat, Y.; Leducq, J.-B.; Weil, A. A.; Mayo-Smith, L. M.; Chowdhury, F.; Khan, A. I.; Boncy, J.; Buteau, J.; Ivers, L. C.; Ryan, E. T.; Charles, R. C.; Calderwood, S. B.; Qadri, F.; Harris, J. B.; LaRocque, R. C.; Shapiro, B. J.

10.1101/169292 — microbiology — Posted on 2017-07-28

173 Mammalian Orthoreovirus Factories Modulate Stress Granule Protein Localization by Interaction with G3BP1

Choudhury, P.; Bussiere, L.; Miller, C. L.

10.1101/169433 — microbiology — Posted on 2017-07-28

174 Experience-dependent translational state defined by cell type-specific ribosome profiling

Eacker, S. M.; Crawford, K.; Brichta, L.; Riessland, M.; Ingolia, N. T.; Greengard, P.; Dawson, T. M.; Dawson, V. L.

10.1101/169425 — genomics — Posted on 2017-07-28

175 Divergent gene expression levels between diploid and autotetraploid Tolmiea (Saxifragaceae) relative to the total transcriptome, the cell, and biomass

Visger, C.; Wong, G. K.-S.; Zhang, Y.; Soltis, P. S.; Soltis, D. E.

10.1101/169367 — genomics — Posted on 2017-07-28

176 ciRS-7 exonic sequence is embedded in a long-noncoding RNA locus

Barrett, S.; Parker, K. R.; Horn, C.; Mata, M.; Salzman, J.

10.1101/169508 — genetics — Posted on 2017-07-28

177 Budding yeast Wpl1p regulates cohesin functions in cohesion, condensation and DNA repair by a common mechanism

Bloom, M. S.; Guacci, V.; Koshland, D.

10.1101/169474 — genetics — Posted on 2017-07-28

178 Suppression of Transposable Elements in Leukemic Stem Cells

Colombo, A. R.; Zubair, A.; Thiagarajan, D.; Nuzhdin, S.; Triche, T. J.; Ramsingh, G.

10.1101/169524 — cancer biology — Posted on 2017-07-28

179 Beyond the Hype: Deep Neural Networks Outperform Established Methods Using A ChEMBL Bioactivity Benchmark Set

Lenselink, E. B.; ten Dijke, N.; Bongers, B.; Papadatos, G.; van Vlijmen, H. W. T.; Kowalczyk, W.; IJzerman, A. P.; van Westen, G. J. P.

10.1101/168914 — bioinformatics — Posted on 2017-07-28

180 Accurate detection of complex structural variations using single molecule sequencing

Sedlazeck, F. J.; Rescheneder, P.; Smolka, M.; Fang, H.; Nattestad, M.; von Haeseler, A.; Schatz, M.

10.1101/169557 — bioinformatics — Posted on 2017-07-28

181 Chemical Gating of the Mechanosensitive Piezo1 Channel by Asymmetric Binding of its Agonist Yoda1

Lacroix, J. J.; Botello-Smith, W. M.; Luo, Y.

10.1101/169516 — biochemistry — Posted on 2017-07-28

182 Binding Thermodynamics and Kinetics Calculations Using Chemical Host and Guest: A Comprehensive Picture of Molecular Recognition

Tang, Z.; Chang, C.-e.

10.1101/155275 — biophysics — Posted on 2017-07-27

183 PinAPL-Py: A comprehensive web-application for the analysis of CRISPR/Cas9 screens

Spahn, P. N.; Bath, T.; Weiss, R. J.; Kim, J.; Esko, J. D.; Lewis, N. E.; Harismendy, O.

10.1101/147462 — bioinformatics — Posted on 2017-07-27

184 Functional significance of spectrotemporal response functions obtained using magnetoencephalography

Cervantes Constantino, F.; Villafane-Delgado, M.; Camenga, E.; Dombrowski, K.; Walsh, B.; Simon, J. Z.

10.1101/168997 — neuroscience — Posted on 2017-07-27

185 Expanding the Atlas of Functional Missense Variation for Human Genes

Weile, J.; Sun, S.; Cote, A. G.; Knapp, J.; Verby, M.; Mellor, J. C.; Wu, Y.; Pons, C.; Wong, C.; van Lieshout, N.; Yang, F.; Tasan, M.; Tan, G.; Yang, S.; Fowler, D. M.; Nussbaum, R.; Bloom, J. D.; Vidal, M.; Hill, D. E.; Aloy, P.; Roth, F. P.

10.1101/166595 — molecular biology — Posted on 2017-07-27

186 Enrichment of the HIV reservoir in CD32+ CD4 T cells occurs early in blood and tissue

Martin, G.; Pace, M.; Thornhill, J.; Phetsouphanh, C.; Meyerowitz, J.; Gossez, M.; Hopkins, E.; Brown, H.; Robinson, N.; Olejniczak, N.; Ramjee, G.; Kaleebu, P.; Porter, K.; Willberg, C.; Klenerman, P.; Nwokolo, N.; Fox, J.; Fidler, S.; Frater, J.

10.1101/169342 — immunology — Posted on 2017-07-27

187 Is having more than one CRISPR array adaptive?

Weissman, J. L.; Fagan, W. F.; Johnson, P. L. F.

10.1101/148544 — evolutionary biology — Posted on 2017-07-27

188 Avoidance of toxic misfolding does not explain the sequence constraints of highly expressed proteins across organisms

Plata, G.; Vitkup, D.

10.1101/168963 — evolutionary biology — Posted on 2017-07-27

189 The ABC transporter Snu drives formation of the lipid-based inward and outward barrier in the skin of Drosophila

Zuber, R.; Norum, M.; Wang, Y.; Oehl, K.; Accardi, D.; Bartoszewski, S.; Gehring, N.; Berger, J.; Flotenmeyer, M.; Moussian, B.

10.1101/169466 — cell biology — Posted on 2017-07-27

190 Alpha-synuclein fibrils induce autophagy in microglial cells as a consequence of lysosomal damage.

Bussi, C.; Peralta Ramos, J. M.; Arroyo, D. S.; Gallea, J. I.; Ronchi, P.; Kolovou, A.; Wang, J. M.; Florey, O.; Celej, M. S.; Schwab, Y.; Ktistakis, N. T.; Iribarren, P.

10.1101/169375 — cell biology — Posted on 2017-07-27

191 Trajectory-Based Parameterization of a Coarse-Grained Forcefield for High-Throughput Protein Simulation

Jumper, J. M.; Freed, K. F.; Sosnick, T. R.

10.1101/169326 — biophysics — Posted on 2017-07-27

192 HiCRep: assessing the reproducibility of Hi-C data using a stratum-adjusted correlation coefficient

Yang, T.; Zhang, F.; Yardimci, G. G.; Song, F.; Hardison, R. C.; Noble, W. S.; Yue, F.; Li, Q.

10.1101/101386 — bioinformatics — Posted on 2017-07-27

193 Evaluation of machine learning methods to predict peptide binding to MHC Class I proteins

Bhattacharya, R.; Sivakumar, A.; Tokheim, C.; Guthrie, V. B.; Anagnostou, V.; Velculescu, V. E.; Karchin, R.

10.1101/154757 — bioinformatics — Posted on 2017-07-27

194 Phenotypic associations of consensus driver genes in hepatocellular carcinoma

Chaudhary, K.; Lu, L.; Poirion, O. B.; Ching, T.; Garmire, L. X.

10.1101/166090 — bioinformatics — Posted on 2017-07-27

195 Conjunction of Factors Triggering Waves of Seasonal Influenza

Chattopadhyay, I.; Kiciman, E.; Elliott, J.; Shaman, J.; Rzhetsky, A.

10.1101/168476 — epidemiology — Posted on 2017-07-27

196 Maternal alcohol consumption during pregnancy and offspring epigenome-wide DNA methylation: findings from six general population-based birth cohorts

Sharp, G. C.; Arathimos, R.; The PACE Consortium, ; Zuccolo, L.

10.1101/167791 — epidemiology — Posted on 2017-07-27

197 Determining whether a class of random graphs is consistent with an observed contact network

Nath, M.; Ren, Y.; Khorramzadeh, Y.; Eubank, S.

10.1101/168047 — epidemiology — Posted on 2017-07-27

198 Using epidemiological principles to explain fungicide resistance management strategies: why do mixtures outperform alternations?

Elderfield, J. A. D.; Lopez-Ruiz, F. J.; van den Bosch, F.; Cunniffe, N. J.

10.1101/168831 — epidemiology — Posted on 2017-07-27

199 Identification of β-synuclein on secretory granules in chromaffin cells and the effects of α- and β-synuclein on BDNF discharge following fusion

Bittner, M. A.; Bohannon, K. P.; Axelrod, D.; Holz, R. W.

10.1101/158220 — neuroscience — Posted on 2017-07-27

200 Drug Target Ontology to Classify and Integrate Drug Discovery Data

Lin, Y.; Mehta, S.; McGinty, H. K.; Turner, J. P.; Vidovic, D.; Forlin, M.; Koleti, A.; Nguyen, D.-T.; Jensen, L. J.; Guha, R.; Mathias, S. L.; Ursu, O.; Stathias, V.; Duan, J.; Nabizadeh, N.; Chung, C.; Mader, C.; Visser, U.; Yang, J. J.; Bologa, C. G.; Oprea, T.; Schurer, S. C.

10.1101/117564 — bioinformatics — Posted on 2017-07-27

201 Human infants’ understanding of social imitation: Inferences of affiliation from third party observations

Powell, L. J.; Spelke, E. S.

10.1101/050385 — animal behavior and cognition — Posted on 2017-07-27

202 A clinical-anatomical signature of Parkinson’s Disease identified with partial least squares and magnetic resonance imaging

Zeighami, Y.; Fereshtehnejad, S.-M.; Dadar, M.; Collins, D. L.; Postuma, R. B.; Misic, B.; Dagher, A.

10.1101/168989 — neuroscience — Posted on 2017-07-27

203 Integration of visual information in auditory cortex promotes auditory scene analysis through multisensory binding

Atilgan, H.; Town, S.; Wood, K.; Jones, G.; Maddox, R.; Lee, A.; Bizley, J. K.

10.1101/098798 — neuroscience — Posted on 2017-07-27

204 Designing an intuitive web application for drug discovery scientists

Karamanis, N.; Carvalho-Silva, D.; Cham, J. A.; Fumis, L.; Hasan, S.; Hulcoop, D.; Koscielny, G.; Maguire, M.; Newell, W.; Ong, C.; Papa, E.; Pierleoni, A.; Pignatelli, M.; Pundir, S.; Rowland, F.; Vamathevan, J.; Watkins, X.; Barrett, J. C.; Dunham, I.

10.1101/169193 — bioinformatics — Posted on 2017-07-27

205 Insects and incest: field evidence for dangerous liaisons in a parasitoid wasp

Collet, M.; Amat, I.; Sauzet, S.; Auguste, A.; Fauvergue, X.; Mouton, L.; Desouhant, E.

10.1101/169268 — animal behavior and cognition — Posted on 2017-07-27

206 The Generalized Quantitative Model of antibody homeostasis: maintenance of global antibody equilibrium by effector functions

Prechl, J.

10.1101/169276 — immunology — Posted on 2017-07-27

207 Development of a targeted sequencing approach to identify prognostic, predictive and diagnostic markers in paediatric solid tumours

Izquierdo, E.; Yuan, L.; George, S.; Hubank, M.; Jones, C.; Proszek, P.; Shipley, J.; Gatz, S. A.; Stinson, C.; Moore, A. S.; Clifford, S. C.; Hicks, D.; Lindsey, J.; Hill, R.; Jacques, T. S.; Chalker, J.; Thaway, K.; O'Connor, S.; Marshall, L.; Moreno, L.; Pearson, A. D. J.; Chesler, L.; Walker, B. A.; Gonzalez De Castro, D.

10.1101/165746 — genomics — Posted on 2017-07-27

208 Neuronal adaptation and optimal coding in economic decisions

Rustichini, A.; Conen, K. E.; Cai, X.; Padoa-Schioppa, C.

10.1101/147900 — neuroscience — Posted on 2017-07-27

209 Connectome-harmonic decomposition of human brain activity reveals dynamical repertoire re-organisation under LSD

Atasoy, S.; Roseman, L.; Kaelen, M.; Kringelbach, M. L.; Deco, G.; Carhart-Harris, R. L.

10.1101/163667 — neuroscience — Posted on 2017-07-27

210 Replication defective viral genomes exploit a cellular pro-survival mechanism to establish paramyxovirus persistence

Xu, J.; Sun, Y.; Li, Y.; Ruthel, G.; Weiss, S. R.; Raj, A.; Beiting, D.; Lopez, C. B.

10.1101/120766 — microbiology — Posted on 2017-07-27

211 CIDER-Seq: unbiased virus enrichment and single-read, full length genome sequencing

Mehta, D.; Hirsch-Hoffmann, M.; Patrignani, A.; Gruissem, W.; Vanderschuren, H.

10.1101/168724 — genomics — Posted on 2017-07-27

212 Mapping Quantitative Trait Loci Underlying Circadian Light Sensitivity In Drosophila

Adewoye, A. B.; Nuzhdin, S.; Tauber, E.

10.1101/135129 — genetics — Posted on 2017-07-27

213 Avoidance of toxic misfolding does not explain the sequence constrains of highly expressed proteins across organisms

Plata, G.; Vitkup, D.

10.1101/168963 — evolutionary biology — Posted on 2017-07-27

214 "Opposite-of"-information improves similarity calculations in phenotype ontologies

Koehler, S.; Robinson, P. N.; Mungall, C. J.

10.1101/108977 — bioinformatics — Posted on 2017-07-27

215 Beyond Homology Transfer: Deep Learning for Automated Annotation of Proteins

Nauman, M.; Ur Rehman, H.; Politano, G.; Benso, A.

10.1101/168120 — bioinformatics — Posted on 2017-07-27

216 Catecholaminergic Manipulation Alters Dynamic Network Topology Across Behavioral States

Shine, J.; van den Brink, R.; Hernaus, D.; Nieuwenhuis, S.; Poldrack, R.

10.1101/169102 — neuroscience — Posted on 2017-07-27

217 Comparison of decision-related signals in sensory and motor preparatory responses of neurons in Area LIP

Shushruth, S.; Mazurek, M. E.; Shadlen, M. N.

10.1101/169219 — neuroscience — Posted on 2017-07-27

218 The hippocampus as a predictive map

Stachenfeld, K. L.; Botvinick, M. M.; Gershman, S. J.

10.1101/097170 — neuroscience — Posted on 2017-07-27

219 Functional corticostriatal connection topographies predict goal directed behaviour in humans

Marquand, A. F.; Haak, K. V.; Beckmann, C. F.

10.1101/169151 — neuroscience — Posted on 2017-07-27

220 Microsaccadic sampling of moving image information provides Drosophila hyperacute vision

Juusola, M.; Dau, A.; Song, Z.; Solanki, N.; Rien, D.; Jaciuch, D.; Dongre, S.; Blanchard, F.; de Polavieja, G. G.; Hardie, R. C.; Takalo, J.

10.1101/083691 — neuroscience — Posted on 2017-07-27

221 INO80 Chromatin Remodelling Coordinates Metabolic Homeostasis with Cell Division

Gowans, G. J.; Schep, A. N.; Wong, K. M.; King, D. A.; Greenleaf, W.; Morrison, A. J.

10.1101/169128 — molecular biology — Posted on 2017-07-27

222 Determining the Specificity of Cascade Binding, Interference, and Priming in vivo

Cooper, L.; Stringer, A.; Wade, J.

10.1101/169011 — microbiology — Posted on 2017-07-27

223 Multiplexed nanopore sequencing of HLA-B locus in Maori and Polynesian samples

Ton, K. N. T.; Cree, S. L.; Gronert-Sum, S. J.; Merriman, T. R.; Stamp, L. K.; Kennedy, M. A.

10.1101/169078 — genetics — Posted on 2017-07-27

224 SPECTRE: a Suite of PhylogEnetiC Tools for Reticulate Evolution

Bastkowski, S.; Mapleson, D.; Spillner, A.; Wu, T.; Balvociute, M.; Moulton, V.

10.1101/169177 — bioinformatics — Posted on 2017-07-27

225 VPS18 recruits VPS41 to the human HOPS complex via a RING-RING interaction

Hunter, M. R.; Scourfield, E. J.; Emmott, E.; Graham, S. C.

10.1101/169185 — biochemistry — Posted on 2017-07-27

226 Double-digest RAD sequencing outperforms microsatellite loci at assigning paternity and estimating relatedness: a proof of concept in a highly promiscuous bird

Thrasher, D. J.; Butcher, B. G.; Campagna, L.; Webster, M. S.; Lovette, I. J.

10.1101/169144 — animal behavior and cognition — Posted on 2017-07-27

227 Assessment of clonal kinetics reveals multiple trajectories of dendritic cell development

Lin, D.; Kan, A.; Gao, J.; Crampin, E.; Hodgkin, P. D.; Naik, S. H.

10.1101/167635 — systems biology — Posted on 2017-07-27

228 Native or promiscuous? Analyzing putative dimethylsulfoniopropionate lyases using a substrate proofing approach

Lei, L.; Cherukuri, K. P.; Meltzer, D.; Alcolombri, U.; Tawfik, D.

10.1101/168930 — biochemistry — Posted on 2017-07-27

229 Mapping Movement, Mood, Motivation, and Mentation in the Subthalamic Nucleus

Gourisankar, A.; Eisenstein, S. A.; Trapp, N. T.; Koller, J. M.; Campbell, M. C.; Ushe, M.; Perlmutter, J. S.; Hershey, T.; Black, K. J.

10.1101/168302 — neuroscience — Posted on 2017-07-27

230 Reinforced Random Walker meets Spike Timing Dependent Plasticity

Soltanipour, M. R.; Seyed-allaei, H.

10.1101/168401 — neuroscience — Posted on 2017-07-27

231 Experimental evolution and genome data analysis of Candida albicans reveals cryptic bacteria in single yeast colonies

Bruno, D. C. F.; Bartelli, T. F.; Rodrigues, C. R.; Briones, M. R. S.

10.1101/168500 — microbiology — Posted on 2017-07-27

232 Quartet-based computations of internode certainty provide accurate and robust measures of phylogenetic incongruence

Zhou, X.; Lutteropp, S.; Czech, L.; Stamatakis, A.; von Looz, M.; Rokas, A.

10.1101/168526 — evolutionary biology — Posted on 2017-07-27

233 DiGeST: Distributed Computing for Scalable Gene and Variant Ranking with Hadoop/Spark

Le Borgne, Y.-A.; Helaers, R.; Lenaerts, T.; Abramowicz, M.; Smits, G.; Bontempi, G.

10.1101/168633 — bioinformatics — Posted on 2017-07-27

234 Is coding a relevant metaphor for the brain?

Brette, R.

10.1101/168237 — neuroscience — Posted on 2017-07-27

235 Acute stress induces long-lasting alterations in the dopaminergic system of female mice

Wichmann, R.; Vander Weele, C. M.; Yosafat, A. S.; Schut, E. H. S.; Verharen, J. P. H.; Sridharma, S.; Siciliano, C. A.; Izadmehr, E. M.; Farris, K. M.; Wildes, C. P.; Kimchi, E. Y.; Tye, K. M.

10.1101/168492 — neuroscience — Posted on 2017-07-27

236 Genome-wide association study of depression phenotypes in UK Biobank (n = 322,580) identifies the enrichment of variants in excitatory synaptic pathways

Howard, D. M.; Adams, M. J.; Shirali, M.; Clarke, T.-K.; Marioni, R. E.; Davies, G.; Coleman, J. R. I.; Alloza, C.; Shen, X.; Barbu, M. C.; Wigmore, E. M.; Hagenaars, S.; Lewis, C. M.; Smith, D. J.; Sullivan, P. F.; Haley, C. S.; Breen, G.; Deary, I. J.; McIntosh, A. M.

10.1101/168732 — genetics — Posted on 2017-07-27

237 Maternal Effects and Parent-Offspring Conflict

Kuijper, B.; Johnstone, R. A.

10.1101/168310 — evolutionary biology — Posted on 2017-07-27

238 Effects of population- and seed bank noise on neutral evolution and efficacy of natural selection

Heinrich, L.; Mueller, J.; Tellier, A.; Zivkovic, D.

10.1101/168682 — evolutionary biology — Posted on 2017-07-27

239 An in vivo binding assay for RNA-binding proteins based on repression of a reporter gene

Katz, N.; Kaufmann, B.; Cohen, R.; Solomon, O.; Atar, O.; Yakhini, Z.; Goldberg, S.; Amit, R.

10.1101/168625 — synthetic biology — Posted on 2017-07-26

240 Vacuolar invertase activity shapes photosynthetic stress response of Arabidopsis thaliana and stabilizes central energy supply

Weiszmann, J.; Fuertauer, L.; Weckwerth, W.; Naegele, T.

10.1101/168617 — plant biology — Posted on 2017-07-26

241 Modeling mesoscopic cortical dynamics using a mean-field model of conductance-based networks of adaptive exponential integrate-and-fire neurons

Zerlaut, Y.; Chemla, S.; Chavane, F.; Destexhe, A.

10.1101/168385 — neuroscience — Posted on 2017-07-26

242 CIDER-Seq: unbiased virus enrichment and single-read, full length genome sequencing

Mehta, D.; Hirsch-Hoffmann, M.; Patrignani, A.; Gruissem, W.; Vanderschuren, H.

10.1101/168724 — genomics — Posted on 2017-07-26

243 Causal associations between risk factors and common diseases inferred from GWAS summary data

Zhu, Z.; Zheng, Z.; Zhang, F.; Wu, Y.; Trzaskowski, M.; Maier, R.; Robinson, M.; McGrath, J.; Visscher, P.; Wray, N.; Yang, J.

10.1101/168674 — genetics — Posted on 2017-07-26

244 CINNA: Deciphering Central Informative Nodes in Network Analysis

Ashtiani, M.; Jafari, M.

10.1101/168757 — systems biology — Posted on 2017-07-26

245 Trade-off and flexibility in the dynamic regulation of the cullin-RING ubiquitin ligase repertoire

Straube, R.; Flockerzi, D.; Wolf, D. A.

10.1101/168898 — systems biology — Posted on 2017-07-26

246 High-throughput profiling and analysis of plant responses over time to abiotic stress

Veley, K. M.; Berry, J. C.; Fentress, S. J.; Schachtman, D. P.; Baxter, I.; Bart, R.

10.1101/132787 — plant biology — Posted on 2017-07-26

247 Exosomes regulate Neurogenesis and Circuit Assembly in a Model of Rett Syndrome

Sharma, P.; Mesci, P.; Carromeu, C.; McClatchy, D.; Schiapparelli, L.; Yates, J.; Muotri, A.; Cline, H. T.

10.1101/168955 — neuroscience — Posted on 2017-07-26

248 Polar-angle representation of saccadic eye movements in human superior colliculus

Savjani, R. R.; Halfen, E.; Kim, J. H.; Ress, D.

10.1101/169003 — neuroscience — Posted on 2017-07-26

249 Facilitation of motor excitability during listening to spoken sentences is not modulated by noise or semantic coherence

Panouilleres, M. T.; Boyles, R.; Chesters, J.; Watkins, K. E.; Mottonen, R.

10.1101/168864 — neuroscience — Posted on 2017-07-26

250 Functional significance of spectrotemporal response functions obtained using magnetoencephalography

Cervantes Constantino, F.; Villafane-Delgado, M.; Camenga, E.; Dombrowski, K.; Walsh, B.; Simon, J. Z.

10.1101/168997 — neuroscience — Posted on 2017-07-26

251 High throughput amplicon sequencing to assess within- and between-host genetic diversity in plant viruses

Piry, S.; Wipf-Scheibel, C.; Martin, J.-F.; Galan, M.; Berthier, K.

10.1101/168773 — molecular biology — Posted on 2017-07-26

252 RhlR, but not RhlI, allows P. aeruginosa bacteria to evade Drosophila Tep4- mediated opsonization

Haller, S.; Franchet, A.; Hakkim, A.; Chen, J.; Drenkard, E.; Yu, S.; Schirmeier, S.; Li, Z.; Ausubel, F. M.; Liegeois, S.; Ferrandon, D.

10.1101/165530 — immunology — Posted on 2017-07-26

253 Contemporary evolution of a Lepidopteran species, Heliothis virescens, in response to modern agricultural practices

Fritz, M. L.; Deyonke, A. M.; Papanicolaou, A.; Micinski, S.; Westbrook, J.; Gould, F.

10.1101/103382 — evolutionary biology — Posted on 2017-07-26

254 PFKFB4 control of Akt signaling is essential for premigratory and migratory neural crest formation.

Figueiredo, A. L.; Maczkowiak, F.; Borday, C.; Pla, P.; Sittewelle, M.; Pegoraro, C.; Monsoro-Burq, A. H.

10.1101/168807 — developmental biology — Posted on 2017-07-26

255 A human-specific switch of alternatively spliced AFMID isoforms contributes to TP53 mutations and tumor recurrence in hepatocellular carcinoma

Lin, K.-T.; Ma, W.-K.; Scharner, J.; Liu, Y.-R.; Krainer, A. R.

10.1101/169029 — bioinformatics — Posted on 2017-07-26

256 Phenotypic associations of consensus driver genes in hepatocellular carcinoma

Chaudhary, K.; Lu, L.; Poirion, O. B.; Ching, T.; Garmire, L. X.

10.1101/166090 — bioinformatics — Posted on 2017-07-26

257 Improved Split Fluorescent Proteins For Endogenous Protein Labeling

Feng, S.; Sekine, S.; Pessino, V.; Li, H.; Leonetti, M. D.; Huang, B.

10.1101/137059 — bioengineering — Posted on 2017-07-26

258 Evaluation of Topramezone on Zebrafish Retinoid Signaling

Liu, H.; Xu, P.; Fan, Y.; Zhang, W.

10.1101/167296 — molecular biology — Posted on 2017-07-26

259 Cytokinin signaling alters acid-fast staining of Mycobacterium tuberculosis

Samanovic, M. I.; Hsu, H.-C.; Jones, M. B.; Jones, V.; McNeil, M. R.; Becker, S. H.; Zhang, S.; Jordan, A. T.; Strnad, M.; Jackson, M.; Li, H.; Darwin, K. H.

10.1101/168815 — microbiology — Posted on 2017-07-26

260 GUIDES: sgRNA design for loss-of-function screens

Meier, J. A.; Zhang, F.; Sanjana, N.

10.1101/168849 — genetics — Posted on 2017-07-26

261 Avoidance of toxic misfolding does not explain the sequence constrains of highly expressed proteins across organisms

Plata, G.; Vitkup, D.

10.1101/168963 — evolutionary biology — Posted on 2017-07-26

262 A compartmentalized, self-extinguishing signaling network mediates crossover control in meiosis

Zhang, L.; Koehler, S.; Rillo-Bohn, R.; Dernburg, A. F.

10.1101/168948 — cell biology — Posted on 2017-07-26

263 Identifying Simultaneous Rearrangements in Cancer Genomes

Oesper, L.; Dantas, S.; Raphael, B. J.

10.1101/164855 — bioinformatics — Posted on 2017-07-26

Wang, S.; MacLean, A.; Nie, Q.

10.1101/168922 — bioinformatics — Posted on 2017-07-26

265 R2s for Correlated Data: Phylogenetic Models, LMMs, and GLMMs

Ives, A.

10.1101/144170 — evolutionary biology — Posted on 2017-07-26

266 Safety and Lack of Negative Effects of Wearable Augmented-Reality Social Communication Aid for Children and Adults with Autism

Sahin, N. T.; Keshav, N. U.; Salisbury, J. P.; Vahabzadeh, A.

10.1101/164335 — neuroscience — Posted on 2017-07-26

267 Information topology of gene expression profile in dopaminergic neurons

Tapia Pacheco, M.; Baudot, P.; Dufour, M. A.; Formisano-Treziny, C.; Temporal, S.; Lasserre, M.; Gabert, J.; Kobayashi, K.; Goaillard, J.-M.

10.1101/168740 — systems biology — Posted on 2017-07-26

268 Reduced order modeling and analysis of the human complement system

Sagar, A.; Dai, W.; Minot, M.; LeCover, R.; Varner, J. D.

10.1101/059386 — systems biology — Posted on 2017-07-26

269 Antidepressant-like effect of losartan involves TRKB transactivation from angiotensin receptor type 2 (AGTR2) and recruitment of FYN

Alves Faria Diniz, C. R.; Casarotto, P.; Fred, S. M.; Biojone, C.; Castren, E.; Joca, S. R. L.

10.1101/168708 — pharmacology and toxicology — Posted on 2017-07-26

270 P53 toxicity is a hurdle to CRISPR/CAS9 screening and engineering in human pluripotent stem cells

Ihry, R. J.; Worringer, K. A.; Salick, M. R.; Frias, E.; Ho, D.; Theriault, K.; Kommineni, S.; Chen, J.; Sondey, M.; Ye, C.; Randhawa, R.; Kulkarni, T.; Yang, Z.; McAllister, G.; Russ, C.; Reece-Hoyes, J.; Forrester, W.; Hoffman, G. R.; Dolmetsch, R.; Kaykas, A.

10.1101/168443 — molecular biology — Posted on 2017-07-26

271 Noise control is a primary function of microRNAs and post-transcriptional regulation

Schmiedel, J.; Marks, D. S.; Lehner, B.; Bluthgen, N.

10.1101/168641 — genetics — Posted on 2017-07-26

272 Relationships between clans and genetic kin explain cultural similarities over vast distances: the case of Yakutia

Zvenigorosky, V.; Duchesne, S.; Gerard, P.; Alexeev, A.; Kirianov, N.; Nikolaeva, D.; Popov, V.; Petit, C.; Guilaine, J.; Kodolesnikov, S.; Petit, M.; Romanova, L.; Riberon, A.; Geraut, A.; Cannet, C.; Fausser, J.-L.; Pereda, V.; Meniltchuk, O.; Mata, X.; Theves, C.; Bravina, R.; Orlando, L.; Keyser, C.; Ludes, B.; Crubezy, E.

10.1101/168658 — genetics — Posted on 2017-07-26

273 Causal Associations Between Body Mass Index and Mental Health: A Mendelian Randomization Study

van den Broek, N.; Treur, J.; Larsen, J.; Verhagen, M.; Verweij, K.; Vink, J.

10.1101/168690 — genetics — Posted on 2017-07-26

274 Mathematical modeling of tumor-tumor distant interactions supports a systemic control of tumor growth

Benzekry, S.; Lamont, C.; Barbolosi, D.; Hlatky, L.; Hahnfeldt, P.

10.1101/168823 — cancer biology — Posted on 2017-07-26

275 Synthetic single domain antibodies for the conformational trapping of membrane proteins

Zimmermann, I.; Egloff, P.; Hutter, C.; Stohler, P.; Bocquet, N.; Hug, M.; Siegrist, M.; Svacha, L.; Gera, J.; Gmuer, S.; Spies, P.; Gygax, D.; Geertsma, E. R.; Dawson, R. J. P.; Seeger, M. A.

10.1101/168559 — bioengineering — Posted on 2017-07-26

276 Dynamical origins of heat capacity changes in enzyme catalysed reactions

van der Kamp, M. W.; Prentice, E. J.; Kraakman, K. L.; Connolly, M.; Mulholland, A. J.; Arcus, V. L.

10.1101/165324 — biochemistry — Posted on 2017-07-26

277 Quantifying homologous proteins and proteoforms

Malioutov, D.; Chen, T.; Jaffe, J.; Airoldi, E.; Carr, S.; Budnik, B.; Slavov, N.

10.1101/168765 — systems biology — Posted on 2017-07-26

278 Harmonic brain modes: a unifying framework for linking space and time in brain dynamics

Atasoy, S.; Deco, G.; Kringelbach, M. L.; Pearson, J.

10.1101/162040 — neuroscience — Posted on 2017-07-26

279 The first near-complete assembly of the hexaploid bread wheat genome, Triticum aestivum

Zimin, A. V.; Puiu, D.; Hall, R.; Kingan, S.; Clavijo, B. J.; Salzberg, S. L.

10.1101/159111 — genomics — Posted on 2017-07-26

280 c-Myc Represses Transcription of the Epstein-Barr Virus Latent Membrane Protein 1 Early After Primary B Cell Infection

Price, A. M.; Messinger, J. E.; Luftig, M.

10.1101/168484 — cancer biology — Posted on 2017-07-26

281 zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs

Parekh, S.; Ziegenhain, C.; Vieth, B.; Enard, W.; Hellmann, I.

10.1101/153940 — bioinformatics — Posted on 2017-07-26

282 Text mining of disease-lifestyle associations to explain comorbidities in electronic health registries

Jensen, L. J.

10.1101/168211 — bioinformatics — Posted on 2017-07-26

283 Architecture of TAF11/TAF13/TBP complex suggests novel regulatory state in General Transcription Factor TFIID function

Gupta, K.; Watson, A. A.; Baptista, T.; Scheer, E.; Chambers, A. L.; Koehler, C.; Zou, J.; Obong-Ebong, I.; Kandiah, E.; Temblador, A.; Round, A.; Forest, E.; Man, P.; Bieniossek, C.; Laue, E. D.; Lemke, E. A.; Rappsilber, J.; Robinson, C. V.; Devys, D.; Tora, L.; Berger, I.

10.1101/168716 — biochemistry — Posted on 2017-07-26

284 Mutual Information Estimation For Transcriptional Regulatory Network Inference

Ish-Horowicz, J.; Reid, J.

10.1101/132647 — genomics — Posted on 2017-07-26

285 Inferring cell state by quantitative motility analysis reveals a dynamic state system and broken detailed balance

Kimmel, J. C.; Chang, A. Y.; Brack, A. S.; Marshall, W. F.

10.1101/168534 — cell biology — Posted on 2017-07-26

286 The genomic footprint of climate adaptation in Chironomus riparius

Oppold, A.-M.; Wieser, A.; Schell, T.; Patel, S.; Schmidt, H.; Hankeln, T.; Feldmeyer, B.; Pfenninger, M.

10.1101/118190 — evolutionary biology — Posted on 2017-07-26

287 A GAL80 collection to nullify transgenes in Drosophila olfactory sensory neurons

Eliason, J.; Afify, A.; Potter, C.; Matsumura, I.

10.1101/168468 — neuroscience — Posted on 2017-07-26

288 An updated infrageneric classification of the oaks: review of previous taxonomic schemes and synthesis of evolutionary patterns

Denk, T.; Grimm, G. W.; Manos, P. S.; Deng, M.; Hipp, A.

10.1101/168146 — plant biology — Posted on 2017-07-25

289 Probabilistic language models in cognitive neuroscience: promises and pitfalls

Armeni, K.; Willems, R. M.; Frank, S.

10.1101/168161 — neuroscience — Posted on 2017-07-25

290 Dynamic semantic cognition: Characterising coherent and controlled conceptual retrieval through time using magnetoencephalography and chronometric transcranial magnetic stimulation

Teige, C.; Mollo, G.; Millman, R.; Savill, N.; Smallwood, J.; Cornelissen, P.; Jefferies, E.

10.1101/168203 — neuroscience — Posted on 2017-07-25

291 Mechanical Activation Of Piezo1 But Not Nav1.2 Channels By Ultrasound

Prieto, M. L.; Firouzi, K.; Khuri-Yakub, B. T.; Maduke, M.

10.1101/136994 — neuroscience — Posted on 2017-07-25

292 Genomic landscape of oxidative DNA damage and repair reveals regioselective protection from mutagenesis

Poetsch, A. R.; Boulton, S. J.; Luscombe, N.

10.1101/168153 — genomics — Posted on 2017-07-25

293 A homozygous variant in mitochondrial RNase P subunit PRORP is associated with Perrault syndrome characterized by hearing loss and primary ovarian insufficiency

Hochberg, I.; Demain, L. A. M.; Urquhart, J. E.; Amberger, A.; Deutschmann, A. J.; Demetz, S.; Thompson, K.; O'Sullivan, J.; Belyantseva, I. A.; Barzik, M.; Williams, S. G.; Bhaskar, S. S.; Jenkinson, E. M.; AlSheqaih, N.; Blumenfeld, Z.; Yalonetsky, S.; Oerum, S.; Rossmanith, W.; Yue, W. W.; Zschocke, J.; Taylor, R. W.; Friedman, T. B.; Munro, K. J.; O'Keefe, R. T.; Newman, W. G.

10.1101/168252 — genetics — Posted on 2017-07-25

294 Flexible, multi-use, PCR-based nucleic acid integrity assays based on the ubiquitin C gene

Van Poucke, M.; Peelman, L.

10.1101/168195 — genetics — Posted on 2017-07-25

295 Remodeling of ER-exit sites initiates a membrane supply pathway forautophagosome biogenesis

Ge, L.; Zhang, M.; Kenny, S.; Liu, D.; Maeda, M.; Saito, K.; Marthur, A.; Xu, K.; Schekman, R.

10.1101/168518 — cell biology — Posted on 2017-07-25

296 Objective, Quantitative, Data-Driven Assessment of Chemical Probes

Antolin, A. A.; Tym, J. E.; Komianou, A.; Collins, I.; Workman, P.; Al-Lazikani, B.

10.1101/168369 — bioinformatics — Posted on 2017-07-25

297 Text mining of disease-lifestyle associations to explain comorbidities in electronic health registries

Jensen, L. J.

10.1101/168211 — bioinformatics — Posted on 2017-07-25

298 Imaging action potential in single mammalian neurons by tracking the accompanying sub-nanometer mechanical motion

Yang, Y.; Liu, X.-W.; Yu, H.; Guan, Y.; Wang, S.; Tao, N.

10.1101/168054 — bioengineering — Posted on 2017-07-25

299 Identification of Pathways Associated with Chemosensitivity through Network Embedding

Wang, S.; Huang, E.; Cairns, J.; Peng, J.; Wang, L.; Sinha, S.

10.1101/168450 — pharmacology and toxicology — Posted on 2017-07-25

300 Discovery of novel representatives of bilaterian neuropeptide families and reconstruction of neuropeptide precursor evolution in ophiuroid echinoderms

Zandawala, M.; Moghul, I.; Yanez Guerra, L. A.; Delroisse, J.; Abylkassimova, N.; Hugall, A. F.; O'Hara, T. D.; Elphick, M. R.

10.1101/129783 — neuroscience — Posted on 2017-07-25

301 A large kinome in a large cell: Stentor coeruleus possesses highly expanded kinase families and novel domain architectures

Reiff, S. B.; Marshall, W. F.

10.1101/168187 — genomics — Posted on 2017-07-25

302 Rare genetic variants in the endocannabinoid system genes CNR1 and DAGLA are associated with neurological phenotypes in humans

Smith, D. R.; Stanley, C. M.; Foss, T.; Boles, R. G.; McKernan, K.

10.1101/168435 — genetics — Posted on 2017-07-25

303 Conservation of a gene cluster reveals novel cercosporin biosynthetic mechanisms and extends production to the genus Colletotrichum

de Jonge, R.; Ebert, M. K.; Huitt-Roehl, C. R.; Pal, P.; Suttle, J. C.; Spanner, R. E.; Neubauer, J. D.; Jurick, W. M.; Stott, K. A.; Secor, G. A.; Thomma, B. P.; Van de Peer, Y.; Townsend, C. A.; Bolton, M. D.

10.1101/100545 — evolutionary biology — Posted on 2017-07-25

304 Computational proteogenomic identification and functional interpretation of translated fusions and micro structural variations in cancer

Lin, Y.-Y.; Gawronski, A.; Hach, F.; Li, S.; Numanagic, I.; Sarrafi, I.; Mishra, S.; McPherson, A. W.; Collins, C. C.; Radovich, M.; Tang, H.; Sahinalp, S. C.

10.1101/168377 — bioinformatics — Posted on 2017-07-25

305 PhenoSpD: an integrated toolkit for phenotypic correlation estimation and multiple testing correction using GWAS summary statistics

Zheng, J.; Richardson, T.; Millard, L.; Hemani, G.; Raistrick, C.; Vilhjalmsson, B.; Haycock, P.; Gaunt, T.

10.1101/148627 — bioinformatics — Posted on 2017-07-25

306 Impaired social contacts with familiar anesthetized conspecific in CA3-restricted BDNF knockout mice

Ito, W.; Huang, H.; Brayman, V.; Morozov, A.

10.1101/168229 — animal behavior and cognition — Posted on 2017-07-25

307 Secretion of redox-active metabolites as a general strategy for iron acquisition in plants

Rajniak, J.; Giehl, R. F.; Chang, E.; Murgia, I.; von Wiren, N.; Sattely, E. S.

10.1101/168104 — plant biology — Posted on 2017-07-25

308 FaStore - a space-saving solution for raw sequencing data

Roguski, Łukasz; Ochoa, I.; Hernaez, M.; Deorowicz, S.

10.1101/168096 — bioinformatics — Posted on 2017-07-25

309 Pollen tube growth and guidance: Occam’s razor sharpened on a molecular AGP Rosetta Stone

Lamport, D. T. A.; Tan, L.; Held, M.; Kieliszewski, M. J.

10.1101/167890 — biochemistry — Posted on 2017-07-25

310 Introgression patterns between house mouse subspecies and species reveal genomic windows offrequent exchange

Ullrich, K. K.; Linnenbrink, M.; Tautz, D.

10.1101/168328 — evolutionary biology — Posted on 2017-07-25

311 Convergent evolution as an indicator for selection during acute HIV-1 infection

Bertels, F.; Metzner, K. J.; Regoes, R. R.

10.1101/168260 — evolutionary biology — Posted on 2017-07-25

312 Beyond Homology Transfer: Deep Learning for Automated Annotation of Proteins

Nauman, M.; Ur Rehman, H.; Politano, G.; Benso, A.

10.1101/168120 — bioinformatics — Posted on 2017-07-25

313 Long-term consolidation switches goal proximity coding from hippocampus to retrosplenial cortex

Patai, E. Z.; Javadi, A.-H.; Ozubko, J. D.; O'Callaghan, A.; Ji, S.; Robin, J.; Grady, C.; Winocur, G.; Rosenbaum, S. R.; Moscovitch, M.; Spiers, H. J.

10.1101/167882 — neuroscience — Posted on 2017-07-25

314 Extracellular monomeric and aggregated tau efficiently enter human neurons through overlapping but distinct pathways

Wassmer, T.; Evans, L.; Fraser, G.; Smith, J.; Perkinton, M.; Billinton, A.; Livesey, F.

10.1101/168294 — neuroscience — Posted on 2017-07-25

315 Long-term consolidation switches goal proximity coding from hippocampus to retrosplenial cortex

Patai, E. Z.; Javadi, A.-H.; Ozubko, J. D.; Ji, S.; O'Callaghan, A.; Robin, J.; Grady, C.; Winocur, G.; Rosenbaum, S. R.; Moscovitch, M.; Spiers, H. J.

10.1101/167882 — neuroscience — Posted on 2017-07-25

316 Overexpression of Channelrhodopsin 2 interferes with the GABAb receptor-mediated depression of GABA release from the somatostatin-containing interneurons of the prefrontal cortex

Liu, L.; Ito, W.; Morozov, A.

10.1101/168245 — neuroscience — Posted on 2017-07-25

317 High-yield methods for accurate two-alternative visual psychophysics in head-fixed mice

Burgess, C. P.; Lak, A.; Steinmetz, N.; Zatka-Haas, P.; Bai Reddy, C.; Jacobs, E. A. K.; Linden, J. F.; Paton, J. J.; Ranson, A.; Schroeder, S.; Soares, S.; Wells, M. J.; Wool, L. E.; Harris, K. D.; Carandini, M.

10.1101/051912 — neuroscience — Posted on 2017-07-25

318 Activated CD8 T cells express two distinct P-Selectin Ligands

Carlow, D. A.; Tra, M. C.; Ziltener, H. J.

10.1101/167957 — immunology — Posted on 2017-07-25

319 AKT isoforms have distinct hippocampal expression and roles in synaptic plasticity

Levenga, J.; Wong, H.; Milstead, R. A.; Keller, B. N.; LaPlante, L. E.; Hoeffer, C. A.

10.1101/168336 — cell biology — Posted on 2017-07-25

320 Dystroglycan Maintains Inner Limiting Membrane Integrity To Coordinate Retinal Development

Clements, R.; Turk, R.; Campbell, K.; Wright, K. M.

10.1101/121756 — neuroscience — Posted on 2017-07-25

321 Exclusive functional subnetworks of intracortical projection neurons in primary visual cortex

Kim, M.-H.; Znamenskiy, P.; Iacaruso, M. F.; Mrsic-Flogel, T. D.

10.1101/153247 — neuroscience — Posted on 2017-07-25

322 Computational Foundations of Natural Intelligence

van Gerven, M.

10.1101/166785 — neuroscience — Posted on 2017-07-25

323 The effect of common inversion polymorphisms In(2L)t and In(3R)Mo on patterns of transcriptional variation in Drosophila melanogaster

Lavington, E.; Kern, A. D.

10.1101/128926 — genomics — Posted on 2017-07-25

324 Memory retrieval recruits both innate and learned olfactoryprocessing centres in Drosophila

Dolan, M.-J.; Belliart-Guerin, G.; Aso, Y.; Bates, A. S.; Frechter, S.; Wong, A.; Hammad, A.; Rubin, G. M.; Preat, T.; Placais, P.-Y.; Jefferis, G. S. X. E.

10.1101/167312 — neuroscience — Posted on 2017-07-25

325 Ancient genomic variation underlies recent and repeated ecological adaptation

Nelson, T. C.; Cresko, W. A.

10.1101/167981 — evolutionary biology — Posted on 2017-07-25

326 The cytoplasmic DNA sensor cGAS promotes mitotic cell death

Zierhut, C.; Funabiki, H.

10.1101/168070 — cell biology — Posted on 2017-07-25

327 The human auditory brainstem response to running speech reveals a subcortical mechanism for selective attention

Forte, A. E.; Etard, O.; Reichenbach, T.

10.1101/167718 — neuroscience — Posted on 2017-07-25

328 Quorum sensing integrates environmental cues, cell density and cell history to control bacterial competence

Moreno-Gamez, S.; Sorg, R.; Domenech, A.; Kjos, M.; Weissing, F. J.; van Doorn, G. S.; Veening, J.-W.

10.1101/075762 — microbiology — Posted on 2017-07-25

329 Neotrygon vali, a new species of the blue-spotted maskray complex (Myliobatoidei: Dasyatidae)

Borsa, P.

10.1101/106682 — zoology — Posted on 2017-07-25

330 Costing ‘the’ MTD

Norris, D. C.

10.1101/150821 — pharmacology and toxicology — Posted on 2017-07-25

331 Molecular Correlate of Mouse Executive Function. Top-Down and Bottom-Up Complementations by Presynaptic Vertebrate-Specific Gene Paralogs

Prosselkov, P.; Zhang, Q.; Goto, H.; Polygalov, D.; McHugh, T. J.; Itohara, S.

10.1101/139444 — neuroscience — Posted on 2017-07-25

332 Meta-analysis of exome array data identifies six novel genetic loci for lung function

Jackson, V. E.; Latourelle, J. C.; Wain, L. V.; Smith, A. V.; Grove, M. L.; Bartz, T. M.; Obeidat, M.; Province, M. A.; Gao, W.; Qaiser, B.; Porteous, D. J.; Cassano, P. A.; Ahluwalia, T. S.; Grarup, N.; Li, J.; Altmaier, E.; Marten, J.; Harris, S. E.; Manichaikul, A.; Pottinger, T. D.; Li-Gao, R.; Lind-Thomsen, A.; Mahajan, A.; Lahousse, L.; Imboden, M.; Teumer, A.; Prins, B.; Lyytikäinen, L.-P.; Eiriksdottir, G.; Franceschini, N.; Sitlani, C. M.; Brody, J. A.; Bosse, Y.; Timens, W.; Kraja, A.; Loukola, A.; Tang, W.; Liu, Y.; Bork-Jensen, J.; Justesen, J. M.; Linneberg, A.; Lange, L.

10.1101/164426 — genetics — Posted on 2017-07-25

333 Sonic Kayaks: Environmental monitoring and experimental music by citizens

Griffiths, A.; Kemp, K.; Matthews, K.; Garrett, J.; Griffiths, D.

10.1101/167833 — ecology — Posted on 2017-07-25

334 A cross-validation-based approach for delimiting reliable home range estimates

Dougherty, E. R.; Carlson, C. J.; Blackburn, J. K.; Getz, W. M.

10.1101/168021 — ecology — Posted on 2017-07-25

335 Bioengineered intestinal muscularis complexes with long-term spontaneous and periodic contractions

Wang, Q.; Wang, K.; Solorzano-Vargas, R. S.; Lin, P.-Y.; Walthers, C. M.; Thomas, A.-L.; Martin, M. G.; Dunn, J. C. Y.

10.1101/152132 — bioengineering — Posted on 2017-07-25

336 Intrinsic brain connectivity after partial sleep deprivation in young and older adults: results from the Stockholm Sleepy Brain study

Nilsonne, G.; Tamm, S.; Schwarz, J.; Almeida, R.; Fischer, H.; Kecklund, G.; Lekander, M.; Fransson, P.; Akerstedt, T.

10.1101/073494 — neuroscience — Posted on 2017-07-25

337 Modulation of Body Mass Composition using Vestibular Nerve Stimulation

McGeoch, P. D.; McKeown, J.; Peterson, H.; Ramachandran, V. S.

10.1101/087692 — neuroscience — Posted on 2017-07-25

338 The hippocampus as a predictive map

Stachenfeld, K. L.; Botvinick, M. M.; Gershman, S. J.

10.1101/097170 — neuroscience — Posted on 2017-07-25

339 Whole genome and RNA sequencing of 1,220 cancers reveals hundreds of genes deregulated by rearrangement of cis-regulatory elements

Zhang, Y.; Chen, F.; Fonseca, N. A.; He, Y.; Fujita, M.; Nakagawa, H.; Zhang, Z.; Brazma, A.; Creighton, C.

10.1101/099861 — genomics — Posted on 2017-07-25

340 Tagmentation-Based Mapping (TagMap) of Mobile DNA Genomic Insertion Sites

Stern, D. L.

10.1101/037762 — molecular biology — Posted on 2017-07-25

341 A direct approach to estimating false discovery rates conditional on covariates

Boca, S. M.; Leek, J. T.

10.1101/035675 — bioinformatics — Posted on 2017-07-25

342 A Biomaterial Screening Approach to Reveal Microenvironmental Mechanisms of Drug Resistance

Schwartz, A. D.; Barney, L. E.; Jansen, L. E.; Nguyen, T. V.; Hall, C. L.; Meyer, A. S.; Peyton, S.

10.1101/168039 — bioengineering — Posted on 2017-07-25

343 Profiling of accessible chromatin regions across multiple plant species and cell types reveals common gene regulatory principles and new control modules

Maher, K. A.; Bajic, M.; Kajala, K.; Reynoso, M.; Pauluzzi, G.; West, D. A.; Zumstein, K.; Woodhouse, M.; Bubb, K.; Dorrity, M.; Queitsch, C.; Bailey-Serres, J.; Sinha, N.; Brady, S. M.; Deal, R. B.

10.1101/167932 — plant biology — Posted on 2017-07-24

344 Operating regimes of covalent modification cycles at high enzyme concentrations

Straube, R.

10.1101/167825 — systems biology — Posted on 2017-07-24

345 Capturing the diversity of biological tuning curves using generative adversarial networks

Arakaki, T.; Barello, G.; Ahmadian, Y.

10.1101/167916 — neuroscience — Posted on 2017-07-24

346 Activated CD8 T cells express two distinct P-Selectin Ligands

Carlow, D. A.; Tra, M. C.; Ziltener, H. J.

10.1101/167957 — immunology — Posted on 2017-07-24

347 High-depth whole genome sequencing of a large population-specific reference panel: Enhancing sensitivity, accuracy, and imputation

Lencz, T.; Yu, J.; Palmer, C.; Carmi, S.; Ben-Avraham, D.; Barzilai, N.; Bressman, S.; Darvasi, A.; Cho, J.; Clark, L.; Gumus, Z.; Joseph, V.; Klein, R.; Lipkin, S.; Offit, K.; Ostrer, H.; Ozelius, L.; Peter, I.; Atzmon, G.; Pe'er, I.

10.1101/167924 — genomics — Posted on 2017-07-24

348 Insights into global planktonic diatom diversity:Comparisons between phylogenetically meaningful unitsthat account for time

Nakov, T.; Beaulieu, J.; Alverson, A.

10.1101/167809 — evolutionary biology — Posted on 2017-07-24

349 Metabolism constrains bird and mammal ranges and predicts shifts in response to climate change

Buckley, L.; Khaliq, I.; Swanson, D.; Hof, C.

10.1101/167973 — ecology — Posted on 2017-07-24

350 Characterizing and Managing Missing Structured Data in Electronic Health Records

Beaulieu-Jones, B. K.; Lavage, D. R.; Snyder, J. W.; Moore, J. H.; Pendergrass, S. A.; Bauer, C. R.

10.1101/167858 — bioinformatics — Posted on 2017-07-24

351 Low Rate of Somatic Mutations in a Long-Lived Oak Tree

Sarkar, N.; Schmid-Siegert, E.; Iseli, C.; Calderon, S.; Gouhier-Darimont, C.; Chrast, J.; Cattaneo, P.; Schutz, F.; Farinelli, L.; Pagni, M.; Schneider, M.; Voumard, J.; Jaboyedoff, M.; Fankhauser, C.; Hardtke, C. S.; Keller, L.; Pannell, J. R.; Reymond, A.; Robinson-Rechavi, M.; Xenarios, I.; Reymond, P.

10.1101/149203 — plant biology — Posted on 2017-07-24

352 Splicing-dependent NMD requires Prp17 in Saccharomyces cerevisiae

Wen, J.; Marzi, L.; Wang, J.; Ye, J.; Brogna, S.

10.1101/149245 — molecular biology — Posted on 2017-07-24

353 Polioviruses that bind a chimeric Pvr-nectin-2 protein identify capsid residues involved in receptor interaction

Lin, Y.; Racaniello, V. R.

10.1101/162800 — microbiology — Posted on 2017-07-24

354 The IFN response in bat cells consists of canonical and non-canonical ISGs with unique temporal expression kinetics

De La Cruz-Rivera, P. C.; Kanchwala, M.; Liang, H.; Kumar, A.; Wang, L.-F.; Xing, C.; Schoggins, J.

10.1101/167999 — immunology — Posted on 2017-07-24

355 Temperature selection drives evolution of function-valued traits in a marine diatom

O'Donnell, D. R.; Hamman, C. R.; Johnson, E. C.; Klausmeier, C. A.; Litchman, E.

10.1101/167817 — evolutionary biology — Posted on 2017-07-24

356 Coexistence of complete competitors with fitness inequality

Kalmykov, L.; Kalmykov, V.

10.1101/160986 — ecology — Posted on 2017-07-24

357 Estimating Muricid abundances from trapping methods used in Mediterranean Tyrian Purple industry

Coston-Guarini, J.; Guarini, J.-M.; Boehm, F. R.; Kerkhove, T. R. H.; Rivera, F. C.; Erzini, K.; Charles, F.; Deprez, T.; Chauvaud, L.

10.1101/167387 — ecology — Posted on 2017-07-24

358 The mitotic spindle is chiral due to torques generated by motor proteins

Novak, M.; Polak, B.; Simunic, J.; Boban, Z.; Kuzmic, B.; Thomae, A.; Tolic, I. M.; Pavin, N.

10.1101/167437 — cell biology — Posted on 2017-07-24

359 Temporal expression divergence of network modules

Park, Y.; Kang, T.-H.; Friedmann, T.; Bader, J.

10.1101/167734 — bioinformatics — Posted on 2017-07-24

360 beachmat: a Bioconductor C++ API for accessing single-cell genomics data from a variety of R matrix types

Lun, A. T. L.; Pages, H.; Smith, M. L.

10.1101/167445 — bioinformatics — Posted on 2017-07-24

361 Grid-based computational methods for the design of constraint-based parsimonious chemical reaction networks to simulate metabolite production: GridProd

Tamura, T.

10.1101/166777 — bioinformatics — Posted on 2017-07-24

362 Best Practice Data Life Cycle Approaches for the Life Sciences

Griffin, P. C.; Khadake, J.; LeMay, K. S.; Lewis, S. E.; Orchard, S.; Pask, A.; Pope, B.; Roessner, U.; Russell, K.; Seemann, T.; Treloar, A.; Tyagi, S.; Christiansen, J. H.; Dayalan, S.; Gladman, S.; Hangartner, S. B.; Hayden, H. L.; Ho, W. W. H.; Keeble-Gagnere, G.; Korhonen, P. K.; Neish, P.; Prestes, P. R.; Richardson, M. F.; Watson-Haigh, N. S.; Wyres, K. L.; Young, N. D.; Schneider, M. V.

10.1101/167619 — bioinformatics — Posted on 2017-07-24

363 Neotrygon vali, a new blue-spotted maskray complex (Myliobatoidei: Dasyatidae)

Borsa, P.

10.1101/106682 — zoology — Posted on 2017-07-24

364 The Reproducibility Of Research And The Misinterpretation Of P Values

Colquhoun, D.

10.1101/144337 — scientific communication and education — Posted on 2017-07-24

365 Mutations in the pantothenate kinase of Plasmodium falciparum confer diverse sensitivity profiles to antiplasmodial pantothenate analogues

Tjhin, E. T.; Spry, C.; Sewell, A. L.; Hoegl, A.; Barnard, L.; Sexton, A. E.; Howieson, V. M.; Maier, A. G.; Creek, D. J.; Strauss, E.; Marquez, R.; Auclair, K.; Saliba, K. J.

10.1101/137182 — pharmacology and toxicology — Posted on 2017-07-24

366 Tau Internalization is Regulated by 6-O Sulfation on Heparan Sulfate Proteoglycans (HSPGs)

Rauch, J.; Chen, J. J.; Sorum, A. W.; Miller, G. M.; Sharf, T.; See, S. K.; Hsieh-Wilson, L. C.; Kampmann, M.; Kosik, K. S.

10.1101/167874 — neuroscience — Posted on 2017-07-24

367 Common patterns of gene regulation associated with Cesarean section and the development of islet autoimmunity -- indications of immune cell activation

Laimighofer, M.; Lickert, R.; Fürst, R.; Theis, F.; Winkler, C.; Bonifacio, E.; Ziegler, A.-G.; Krumsiek, J.

10.1101/167676 — genomics — Posted on 2017-07-24

368 Disparity, Diversity, And Duplications In The Caryophyllales

Smith, S.; Brown, J. W.; Yang, Y.; Brockington, S. F.; Bruenn, R.; Drummond, C. P.; Walker, J. F.; Last, N.; Douglas, N. A.; Moore, M.

10.1101/132878 — evolutionary biology — Posted on 2017-07-24

369 Whole-body single-cell sequencing of the Platynereis larva reveals a subdivision into apical versus non-apical tissues

Achim, K.; Eling, N.; Martinez Vergara, H.; Bertucci, P. Y.; Brunet, T.; Collier, P.; Benes, V.; Marioni, J. C.; Arendt, D.

10.1101/167742 — evolutionary biology — Posted on 2017-07-24

370 Nonparametric Bayesian inference of transcriptional branching and recombination identifies regulators of early human germ cell development

Penfold, C. A.; Sybirna, A.; Reid, J.; Huang, Y.; Wernisch, L.; Ghahramani, Z.; Grant, M.; Surani, M. A.

10.1101/167684 — developmental biology — Posted on 2017-07-24

371 Patient-derived xenografts undergo murine-specific tumor evolution

Ben-David, U.; Ha, G.; Tseng, Y.-Y.; Greenwald, N. F.; Oh, C.; Shih, J.; McFarland, J. M.; Wong, B.; Boehm, J. S.; Beroukhim, R.; Golub, T. R.

10.1101/167767 — cancer biology — Posted on 2017-07-24

372 Diagnostic and Prognostic Implications of Ribosomal Protein Transcript Coordination in Human Cancers

Dolezal, J. M.; Dash, A. P.; Prochownik, E. V.

10.1101/167940 — cancer biology — Posted on 2017-07-24

373 SNP genotyping and parameter estimation in polyploids using low-coverage sequencing data

Blischak, P.; Kubatko, L.; Wolfe, A.

10.1101/120261 — bioinformatics — Posted on 2017-07-24

374 TiSAn: Estimating Tissue Specific Effects of Genetic Variants

Vervier, K.; Michaelson, J. J.

10.1101/141408 — bioinformatics — Posted on 2017-07-24

375 Prominent Features Of The Amino Acid Mutation Landscape In Cancer

Szpiech, Z. A.; Strauli, N. B.; White, K. A.; Ruiz, D. G.; Jacobson, M. P.; Barber, D. L.; Hernandez, R. D.

10.1101/136002 — bioinformatics — Posted on 2017-07-24

376 Signatures of long-term balancing selection in human genomes

Bitarello, B. D.; de Filippo, C.; Teixeira, J. C.; Schmidt, J.; Kleinert, P.; Meyer, D.; Andres, A. M.

10.1101/119529 — genetics — Posted on 2017-07-24

377 Assessing the relationship of ancient and modern populations

Schraiber, J. G.

10.1101/113779 — evolutionary biology — Posted on 2017-07-24

378 Parasite mediated competition facilitates invasion

Yitbarek, S.

10.1101/167254 — ecology — Posted on 2017-07-24

379 The CURE for Culturing Fastidious Microbes

Bakshi, A.; Webber, A. T.; Patrick, L. E.; Wischusen, E. W.; Thrash, J. C.

10.1101/167130 — scientific communication and education — Posted on 2017-07-24

380 The human auditory brainstem response to running speech reveals a subcortical mechanism for selective attention

Forte, A.; Etard, O.; Reichenbach, T. J. D.

10.1101/167718 — neuroscience — Posted on 2017-07-24

381 The Correlation between MicroRNA-199a and White Adipose Tissue in C57/BL6J Mice with High-Fat Diet

Liu, D.; Wang, X.; Lin, X.; Zhang, B.; Wang, S.; Bao, W.

10.1101/167783 — molecular biology — Posted on 2017-07-24

382 Cyanophages exhibit rhythmic infection patterns under light-dark cycles

Liu, R.; Chen, Y.; Zhang, R.; Liu, Y.; Jiao, N.; Zeng, Q.

10.1101/167650 — microbiology — Posted on 2017-07-24

383 Distinct antibody-mediated selection in a narrow-source HIV-1 outbreak among Chinese former plasma donors

Andrews, S. M.; Zhang, Y.; Dong, T.; Rowland-Jones, S. L.; Gupta, S.; Esbjornsson, J.

10.1101/167510 — immunology — Posted on 2017-07-24

384 Correcting for batch effects in case-control microbiome studies

Gibbons, S.; Duvallet, C.; Alm, E. J.

10.1101/165910 — bioinformatics — Posted on 2017-07-24

385 Conformational dynamics of Cas9 governing DNA cleavage revealed by single molecule FRET

Yang, M.; Peng, S.; Sun, R.; Lin, J.; Wang, N.; Chen, C.

10.1101/167627 — biophysics — Posted on 2017-07-24

386 A transcription factor binding atlas for photosynthesis in cereals identifies a key role for coding sequence in the regulation of gene expression

Burgess, S. J.; Reyna-Llorens, I.; Jaeger, K.; Hibberd, J. M.

10.1101/165787 — plant biology — Posted on 2017-07-24

387 A neural network model for the orbitofrontal cortex and task space acquisition during reinforcement learning

Zhang, Z.; Cheng, Z.; Lin, Z.; Nie, C.; Yang, T.

10.1101/116608 — neuroscience — Posted on 2017-07-24

388 The York Gospels: a one thousand year biological palimpsest

Teasdale, M. D.; Fiddyment, S.; Vnoucek, J.; Mattiangeli, V.; Speller, C.; Binois, A.; Carver, M.; Dand, C.; Newfield, T. P.; Webb, C. C.; Bradley, D. G.; Collins, M. J.

10.1101/146324 — genomics — Posted on 2017-07-24

389 Termite communities along a disturbance gradient in a West African savanna

Schyra, J.; Korb, J.

10.1101/167692 — ecology — Posted on 2017-07-24

390 The TAF10-containing TFIID and SAGA transcriptional complexes are dispensable for early somitogenesis in the mouse embryo

Bardot, P.; Vincent, S. D.; Fournier, M.; Hubaud, A.; Joint, M.; Tora, L.; Pourquie, O.

10.1101/071324 — developmental biology — Posted on 2017-07-24

391 Splatter: Simulation Of Single-Cell RNA Sequencing Data

Zappia, L.; Phipson, B.; Oshlack, A.

10.1101/133173 — bioinformatics — Posted on 2017-07-24

392 Detection and antibiotic susceptibility of pathogenic Escherichia coli isolated from the final effluent of two wastewater treatment plants in the Eastern Cape Province of South Africa

Osuolale, O. O.; Okoh, A. I.

10.1101/160697 — microbiology — Posted on 2017-07-24

393 Schizophrenia Exhibits Bi-Directional Brain-Wide Alterations in Cortico-Striato-Cerebellar Circuits

Ji, J. L.; Diehl, C.; Schleifer, C.; Pearlson, G.; Yang, G.; Creatura, G.; Krystal, J.; Repovs, G.; Murray, J. D.; Winkler, A.; Anticevic, A.

10.1101/166728 — neuroscience — Posted on 2017-07-24

394 Conditionally Redundant Bacteriocin Targeting by Pseudomonas syringae

Hockett, K. L.; Clark, M.; Scott, S.; Baltrus, D. A.

10.1101/167593 — microbiology — Posted on 2017-07-24

395 Genome-wide association analyses identify 44 risk variants and refine the genetic architecture of major depression

- Major Depressive Disorder Working Group of the PGC, ; Wray, N. R.; Sullivan, P. F.

10.1101/167577 — genetics — Posted on 2017-07-24

396 Mosquito Mapper: a phone application to map urban mosquitoes

Guilbaud, C. S. E.; Guilbaud, T. G. D. P. V.

10.1101/167486 — ecology — Posted on 2017-07-24

397 Self-organization mechanism of distinct microtubule orientations in axons and dendrites

Naoki, H.; Uegaki, K.; Ishii, S.

10.1101/163014 — neuroscience — Posted on 2017-07-23

398 Splicing-dependent NMD requires Prp17 in Saccharomyces cerevisiae

Wen, J.; Marzi, L.; Wang, J.; Ye, J.; Brogna, S.

10.1101/149245 — molecular biology — Posted on 2017-07-23

399 Pseudopaline, a staphylopine-like metallophore involved in zinc and nickel uptake in Pseudomonas aeruginosa

Lhospice, S.; Gomez, N. O.; Ouerdane, L.; Brutesco, C.; Ghssein, G.; Hajjar, C.; Liratni, A.; Wang, S.; Richaud, P.; Bleves, S.; Ball, G.; Borezee-Durant, E.; Lobinski, R.; Pignol, D.; Arnoux, P.; Voulhoux, R.

10.1101/165571 — microbiology — Posted on 2017-07-23

400 Response to Editas and Intellia: Unexpected mutations after CRISPR-Cas9 editing in vivo

Schaefer, K. A.; Wu, W.-H.; Darbro, B. W.; Colgan, D. F.; Tsang, S. H.; Bassuk, A. G.; Mahajan, V. B.

10.1101/154450 — bioengineering — Posted on 2017-07-23

401 Platelet phosphorylated TDP-43: An exploratory study for a peripheral surrogate biomarker development for Alzheimer’s disease

Wilhite, R.; Sage, J. M.; Bouzid, A.; Primavera, T.; Agbas, A.

10.1101/132837 — neuroscience — Posted on 2017-07-23

402 Large scale and significant expression from pseudogenes in Sodalis glossinidius - a facultative bacterial endosymbiont

Goodhead, I.; Blow, F.; Brownridge, P.; Hughes, M.; Kenny, J.; Krishna, R.; McLean, L.; Pongchaikul, P.; Beynon, R.; Darby, A. C.

10.1101/124388 — genomics — Posted on 2017-07-23

403 The Evolutionary Dynamics Of The Odorant Receptor Gene Family In Corbiculate Bees

Brand, P.; Ramirez, S. R.

10.1101/130781 — evolutionary biology — Posted on 2017-07-23

404 Paleo-Oscillomics: Reconstructing Language-Relevant Computational Capacities in Neanderthals from the Molecular Basis of Neural Oscillations

Murphy, E.; Benitez-Burraco, A.

10.1101/167528 — neuroscience — Posted on 2017-07-23

405 Risk factor profile of different clinical manifestations of cerebral small vessel disease - data from SHEF-CSVD Study.

Staszewski, J.; Skrobowska, E.; Piusinska-Macoch, R.; Brodacki, B.; Stepien, A.

10.1101/167221 — neuroscience — Posted on 2017-07-23

406 Harmonic brain modes: a unifying framework for linking space and time in brain dynamics

Atasoy, S.; Deco, G.; Kringelbach, M. L.; Pearson, J.

10.1101/162040 — neuroscience — Posted on 2017-07-23

407 Blockade of insulin-like growth factors increases efficacy of paclitaxel in metastatic breast cancer.

Ireland, L.; Santos, A.; Campbell, F.; Figueiredo, C.; Ellies, L.; Weyer-Czernilofsky, U.; Bogenrieder, T.; Schmid, M.; Mielgo, A.

10.1101/165068 — cancer biology — Posted on 2017-07-23

408 Towards a highly efficient diversity census of the prokaryotic biosphere: a group testing approach

Shalem, B.; Amir, A.; Porat, E.; Shental, N.

10.1101/167502 — microbiology — Posted on 2017-07-23

409 Polygenic Adaptation has Impacted Multiple Anthropometric Traits

Berg, J. J.; Zhang, X.; Coop, G.

10.1101/167551 — evolutionary biology — Posted on 2017-07-23

410 The photocycle of orange carotenoid protein conceals distinct intermediates and asynchronous changes in the carotenoid and protein components

Maksimov, E. G.; Sluchanko, N. N.; Slonimskiy, Y. B.; Stepanov, A. V.; Shirshin, E. A.; Tsoraev, G. V.; Klementiev, K. E.; Slatinskaya, O. V.; Lukashev, E. P.; Friedrich, T.; Paschenko, V. Z.; Rubin, A. B.

10.1101/167478 — biophysics — Posted on 2017-07-23

411 Dynamic clustering of dynamin-amphiphysin rings regulates membrane constriction and fission coupled with GTP hydrolysis

Takeda, T.; Ando, T.; Takei, K.; Kozai, T.; Ishikuro, D.; Kumagai, Y.; Uchihashi, T.; Yang, H.; Seyama, K.; Abe, T.; Yamada, H.

10.1101/167262 — biophysics — Posted on 2017-07-23

412 Cross-linking BioThings APIs through JSON-LD to facilitate knowledge exploration

Xin, J.; Afrasiabi, C.; Lelong, S.; Adesara, J.; Tsueng, G.; Su, A. I.; Wu, C.

10.1101/167353 — bioinformatics — Posted on 2017-07-23

413 TruePaiR: Software for the Accurate Identification of Complementary piRNA Read Pairs in High-Throughput Sequencing Data

Schreiner, P. A.; Atkinson, P. W.

10.1101/167452 — bioinformatics — Posted on 2017-07-23

414 Chance, long tails, and inference: a non-Gaussian, Bayesian theory of vocal learning in songbirds

Zhou, B.; Hofmann, D.; Pinkoviezky, I.; Sober, S. J.; Nemenman, I.

10.1101/167460 — animal behavior and cognition — Posted on 2017-07-23

415 The influence of landscape and environmental factors on ranavirus epidemiology in amphibian assemblages

Tornabene, B. J.; Blaustein, A. R.; Briggs, C. J.; Calhoun, D. M.; Johnson, P. T. J.; McDevitt-Galles, T.; Rohr, J. R.; Hoverman, J. T.

10.1101/167395 — ecology — Posted on 2017-07-23

416 Transmitter Co-Expression Reveals Key Organizational Principles of Local Interneuron Heterogeneity in the Olfactory System

Lizbinski, K. M.; Marsat, G. F.; Dacks, A. M.

10.1101/167403 — neuroscience — Posted on 2017-07-23

417 A descending pathway facilitates undulatory wave propagation in Caenorhabditis elegans through gap junctions

Xu, T.; Huo, J.; Shao, S.; Po, M.; Kawano, T.; Lu, Y.; Wu, M.; Zhen, M.; Wen, Q.

10.1101/131490 — neuroscience — Posted on 2017-07-23

418 Diversity of translation initiation mechanisms across bacterial species is driven by environmental conditions and growth demands

Hockenberry, A. J.; Stern, A. J.; Amaral, L. A.; Jewett, M. C.

10.1101/167429 — systems biology — Posted on 2017-07-23

419 Naked mole-rat acid-sensing ion channel 3 forms non-functional homomers, but functional heteromers

Schuhmacher, L.-N.; Srivats, S.; Callejo, G.; Smith, E. S. J.

10.1101/166272 — neuroscience — Posted on 2017-07-22

420 Long-time analytic approximation of large stochastic oscillators: simulation, analysis and inference

Minas, G.; Rand, D. A.

10.1101/068148 — systems biology — Posted on 2017-07-22

421 Preliminary Report on the Impact of Smartglasses-based Behavioral and Social Communication Aid on Hyperactivity in Children and Adults with Autism.

Vahabzadeh, A.; Keshav, N. U.; Salisbury, J. P.; Sahin, N. T.

10.1101/165514 — neuroscience — Posted on 2017-07-22

422 An Augmented Reality Social Communication Aid for Children and Adults with Autism: User and caregiver report of safety and lack of negative effects.

Sahin, N. T.; Keshav, N. U.; Salisbury, J. P.; Vahabzadeh, A.

10.1101/164335 — neuroscience — Posted on 2017-07-22

423 Cytosine methylation within marine sediment microbial communities: potential epigenetic adaptation to the environment

Rambo, I. M.; Marsh, A.; Biddle, J. F.

10.1101/167189 — microbiology — Posted on 2017-07-22

424 Experimental evolution of Candida albicans under hypoxia and heat shock reveals nuclear genome variants and mitochondrial methylome alterations

Bartelli, T. F.; Bruno, D. C.; Lichtenstein, F.; Briones, M. R.

10.1101/167338 — genomics — Posted on 2017-07-22

425 The emergence of words from vocal imitations

Edmiston, P.; Lupyan, G.; Perlman, M.

10.1101/149708 — evolutionary biology — Posted on 2017-07-22

426 The mitotic spindle is chiral due to torques generated by motor proteins

Novak, M.; Polak, B.; Simunic, J.; Boban, Z.; Kuzmic, B.; Thomae, A.; Tolic, I. M.; Pavin, N.

10.1101/167437 — cell biology — Posted on 2017-07-22

427 ESCRT-Independent Surface Receptor And Transporter Protein Degradation By The ILF Pathway

McNally, E. K.; Brett, C.

10.1101/167411 — cell biology — Posted on 2017-07-22

428 Langevin Dynamics Simulation of AKAP-PKA Complex: Re-Envisioning the Local Concentration Mechanism for Directing PKA Phosphorylation

Rigatti, M.; Michalski, P. J.; Dodge-Kafka, K. L.; Moraru, I.

10.1101/161760 — cell biology — Posted on 2017-07-22

429 piClusterBusteR: Software For Automated Classification And Characterization Of piRNA Cluster Loci

Schreiner, P. A.; Atkinson, P.

10.1101/133009 — bioinformatics — Posted on 2017-07-22

430 Functional Diversification of Tripeptidylpeptidase and Endopeptidase Sedolisins in Fungi

Orts, F.; ten Have, A.

10.1101/167379 — bioinformatics — Posted on 2017-07-22

Mills, B. D.; Grayson, D.; Shunmugavel, A.; Miranda-Dominguez, O.; Feczko, E.; Earl, E.; Neve, K.; Fair, D.

10.1101/167304 — neuroscience — Posted on 2017-07-22

432 Repositioning the Sm-binding site in S. cerevisiae telomerase RNA reveals RNP organizational flexibility and Sm-directed 3′-end formation

Hass, E. P.; Zappulla, D. C.

10.1101/167361 — molecular biology — Posted on 2017-07-22

433 Modest static pressure suppresses columnar epithelial cell proliferation in association with cell shape and cytoskeletal modifications

Hagiyama, M.; Yabuta, N.; Okuzaki, D.; Inoue, T.; Takashima, Y.; Kimura, R.; Ri, A.; Ito, A.

10.1101/167270 — molecular biology — Posted on 2017-07-22

434 A novel flatworm-specific gene family implicated in reproduction in Macrostomum lignano

Grudniewska, M.; Mouton, S.; Grelling, M.; Wolters, A. H. G.; Kuipers, J.; Giepmans, B. N. G.; Berezikov, E.

10.1101/167346 — developmental biology — Posted on 2017-07-22

435 The transcriptionally permissive chromatin state of ES cells is acutely tuned totranslational output

Bulut-Karslioglu, A.; Macrae, T. A.; Oses-Prieto, J. A.; Covarrubias, S.; Percharde, M.; Ku, G.; Diaz, A.; McManus, M. T.; Burlingame, A. L.; Ramalho-santos, M.

10.1101/167239 — molecular biology — Posted on 2017-07-22

436 Maternal obesity alters uterine NK cell activity through a functional KIR2DL1/S1 imbalance

Castellana, B.; Perdu, S.; Kim, Y.; Chan, K.; Atif, J.; Marziali, M.; Beristain, A. G.

10.1101/167213 — immunology — Posted on 2017-07-22

437 HID-1 controls cargo sorting and dense core formation by influencing trans- Golgi network acidification in neuroendocrine cells

Hummer, B. H.; de Leeuw, N. F.; Hosford, B.; Burns, C.; Joens, M. S.; Fitzpatrick, J. A.; Asensio, C. S.

10.1101/156794 — cell biology — Posted on 2017-07-22

438 Learning RNA secondary structure (only) from structure probing data

Foo, C.-S.; Pop, C.

10.1101/152629 — bioinformatics — Posted on 2017-07-22

439 Hierarchical Analysis of Multi-mapping RNA-Seq Reads Improves the Accuracy of Allele-specific Expression

Raghupathy, N.; Choi, K.; Vincent, M. J.; Beane, G. L.; Sheppard, K.; Munger, S. C.; Korstanje, R.; Pardo Manuel de Villena, F.; Churchill, G. A.

10.1101/166900 — bioinformatics — Posted on 2017-07-22

440 Spatiotemporal DNA Methylome Dynamics of the Developing Mammalian Fetus

He, Y.; Hariharan, M.; Gorkin, D. U.; Dickel, D. E.; Luo, C.; Castanon, R. G.; Nery, J. R.; Lee, A. Y.; Williams, B. A.; Trout, D.; Amrhein, H.; Fang, R.; Chen, H.; Li, B.; Visel, A.; Pennacchio, L. A.; Ren, B.; Ecker, J. R.

10.1101/166744 — genomics — Posted on 2017-07-21

441 Estimating inflation in GWAS summary statistics due to variance distortion from cryptic relatedness

Holland, D.; Fan, C.-C.; Frei, O.; Shadrin, A. A.; Smeland, O. B.; Sundar, V. S.; Andreassen, O. A.; Dale, A. M.

10.1101/164939 — genomics — Posted on 2017-07-21

442 But will they even wear it? Exploring the tolerability of social communication coaching smartglasses in children and adults with autism.

Keshav, N. U.; Salisbury, J. P.; Vahabzadeh, A.; Sahin, N. T.

10.1101/164376 — neuroscience — Posted on 2017-07-21

443 An Augmented Reality Social Communication Aid for Children and Adults with Autism: User and caregiver report of safety and lack of negative effects.

Sahin, N. T.; Keshav, N. U.; Salisbury, J. P.; Vahabzadeh, A.

10.1101/164335 — neuroscience — Posted on 2017-07-21

444 Ankyrin-1 gene exhibits allelic heterogeneity in conferring protection against malaria

Huang, H. M.; Bauer, D.; Lelliott, P.; Dixon, M.; Tilley, L.; McMorran, B.; Foote, S.; Burgio, G.

10.1101/114959 — microbiology — Posted on 2017-07-21

445 Pathogenic Amino Acid Variants In Mitochondrial Proteins More Frequently Arise In Lineages Closely Related To Human Than In Distant Lineages

Klink, G. V.; Golovin, A. V.; Bazykin, G. A.

10.1101/119792 — evolutionary biology — Posted on 2017-07-21

446 Maximal growth rate requires minimal metabolic complexity

de Groot, D. H.; Planque, R.; van Boxtel, C.; Bruggeman, F. J.; Teusink, B.

10.1101/167171 — systems biology — Posted on 2017-07-21

447 Understanding the dynamics of scaffold-mediated signaling

Suderman, R.; Schauer, A.; Deeds, E.

10.1101/167205 — systems biology — Posted on 2017-07-21

448 Systems-level identification of transcription factors critical for mouse embryonic development

Zhang, K.; Wang, M.; Zhao, Y.; Wang, W.

10.1101/167197 — bioinformatics — Posted on 2017-07-21

449 Printed Droplet Microfluidics for on demand dispensing of picoliter droplets and cells

Cole, R. H.; Tang, S.-Y.; Siltanen, C. A.; Shahi, P.; Zhang, J. Q.; Poust, S.; Gartner, Z. J.; Abate, A. R.

10.1101/167163 — bioengineering — Posted on 2017-07-21

450 RECoN: Rice Environment Coexpression Network for Systems Level Analysis of Abiotic-Stress Response

Krishnan, A.; Gupta, C.; Ambavaram, M. M. R.; Pereira, A.

10.1101/166694 — systems biology — Posted on 2017-07-21

451 Biomass increase under zinc deficiency caused by delay of early flowering in Arabidopsis

Chen, X.; Ludewig, U.

10.1101/166884 — plant biology — Posted on 2017-07-21

452 Progesterone regulates hypothalamic-pituitary-thyroid axis

Zhong, C.; Xiong, K.; Wang, X.

10.1101/166702 — pharmacology and toxicology — Posted on 2017-07-21

453 Competition for a limited supply of synaptic building blocks predicts multiplicative synaptic normalization and heterosynaptic plasticity

Triesch, J.; Hafner, A.-S.

10.1101/166819 — neuroscience — Posted on 2017-07-21

454 Large scale in vivo recording of sensory neuron activity with GCaMP6

Chisholm, K. I.; Khovanov, N.; Lopes, D. M.; La Russa, F.; McMahon, S. B.

10.1101/166959 — neuroscience — Posted on 2017-07-21

455 Inter-subject phase synchronization and the dynamics of human cognition

Bolt, T. S.; Nomi, J.; Vij, S.; Chang, C.; Uddin, L.

10.1101/167072 — neuroscience — Posted on 2017-07-21

Hoffman, P.; Morcom, A. M.

10.1101/167064 — neuroscience — Posted on 2017-07-21

457 The effect of an 8-week mindful eating intervention on anticipatory reward responses in the midbrain

Janssen, L. K.; Duif, I.; Speckens, A. E.; van Loon, I.; de Vries, J. H.; Cools, R.; Aarts, E.

10.1101/165845 — neuroscience — Posted on 2017-07-21

458 Computational Foundations of Natural Intelligence

van Gerven, M.

10.1101/166785 — neuroscience — Posted on 2017-07-21

459 Using MinION to characterize dog skin microbiota through full-length 16S rRNA gene sequencing approach

Cusco, A.; Vines, J.; D'Andreano, S.; Riva, F.; Casellas, J.; Sanchez, A.; Francino, O.

10.1101/167015 — microbiology — Posted on 2017-07-21

460 Systematic mapping of chromatin state landscapes during mouse development

Gorkin, D.; Barozzi, I.; Zhang, Y.; Lee, A. Y.; Lee, B.; Zhao, Y.; Wildberg, A.; Ding, B.; Zhang, B.; Wang, M.; Strattan, J. S.; Davidson, J. M.; Qiu, Y.; Afzal, V.; Akiyama, J. A.; Plajzer-Frick, I.; Pickle, C. S.; Kato, M.; Garvin, T. H.; Pham, Q. T.; Harrington, A. N.; Mannion, B. J.; Lee, E. A.; Fukuda-Yuzawa, Y.; He, Y.; Preissl, S.; Chee, S.; Williams, B. A.; Trout, D.; Amrhein, H.; Yang, H.; Cherry, J. M.; Shen, Y.; Ecker, J. R.; Wang, W.; Dickel, D. E.; Visel, A.; Pennacchio, L. A.; Ren, B.

10.1101/166652 — genomics — Posted on 2017-07-21

461 Identification of 55,000 Replicated DNA Methylation QTL

McRae, A.; Marioni, R. E.; Shah, S.; Yang, J.; Powell, J. E.; Harris, S. E.; Gibson, J.; Henders, A. K.; Bowdler, L.; Painter, J. N.; Murphy, L.; Martin, N. G.; Starr, J. M.; Wray, N. R.; Deary, I. J.; Visscher, P. M.; Montgomery, G. W.

10.1101/166710 — genomics — Posted on 2017-07-21

462 Spatiotemporal DNA Methylome Dynamics of the Developing Mammalian Fetus

10.1101/166744 — genomics — Posted on 2017-07-21

463 Chromatin loop anchors are associated with genome instability in cancer and recombination hotspots in the germline.

Kaiser, V. B.; Semple, C. A.

10.1101/166934 — genomics — Posted on 2017-07-21

464 Varying-Censoring Aware Matrix Factorization for Single Cell RNA-Sequencing

Townes, F. W.; Hicks, S. C.; Aryee, M. J.; Irizarry, R. A.

10.1101/166736 — genomics — Posted on 2017-07-21

465 Regulating the UAS/GAL4 system in adult Drosophila with Tet-off GAL80 transgenes

Barwell, T.; DeVeale, B.; Poirier, L.; Zheng, J.; Seroude, F.; Seroude, L.

10.1101/167056 — genetics — Posted on 2017-07-21

466 Developmental transcriptomics of the brittle star Amphiura filiformis reveals gene regulatory network rewiring in echinoderm larval skeleton evolution

Dylus, D. V.; Blowes, L. M.; Czarkwiani, A.; Elphick, M. R.; Oliveri, P.

10.1101/166991 — evolutionary biology — Posted on 2017-07-21

467 Multiple Geographical Origins of Environmental Sex Determination enhanced the diversification of Darwins Favourite Orchids

Perez-Escobar, O. A.; Chomicki, G.; Condamine, F. L.; de Vos, J. M.; Martins, A. C.; Smidt, E.; Klitgaard, B. B.; Gerlach, G.; Heinrichs, J.

10.1101/167098 — evolutionary biology — Posted on 2017-07-21

468 Limited genetic variation for male mating success reveals low evolutionary potential for thermal plasticity in Drosophila melanogaster

Waller, J. T.; Kell, A.; Ballesta, M.; Giraud, A.; Abbott, J.; Svensson, E.

10.1101/166801 — evolutionary biology — Posted on 2017-07-21

469 De Novo Genes are "Frozen Accidents" whichEscaped Rapid Turnover of Pervasively TranscribedORFs

Schmitz, J. F.; Ullrich, K.; Bornberg-Bauer, E.

10.1101/166827 — evolutionary biology — Posted on 2017-07-21

470 Persistent patterns of high alpha and low beta diversity in tropical parasitic and free-living protists

Lentendu, G.; Mahe, F.; Bass, D.; Rueckert, S.; Stoeck, T.; Dunthorn, M.

10.1101/166892 — ecology — Posted on 2017-07-21

471 Endophyte Chaetomium globosum D38 and its elicitors promote tanshinones accumulation of Salvia miltiorrhiza

Zhai, X.; Luo, D.; Li, X. Q.; Han, T.; Kong, Z. Y.; Ji, J. C.; Qin, L. P.; Zheng, C. J.

10.1101/167007 — developmental biology — Posted on 2017-07-21

472 BRG1/BRM-associated factor complex subunit diversity promotes temporally distinct gene expression programs in cardiogenesis

Hota, S.; Johnson, J.; Verschueren, E.; Zhu, Y.; Sun, X.; Pennacchio, L.; Rossant, J.; Krogan, N.; Bruneau, B.

10.1101/166983 — developmental biology — Posted on 2017-07-21

473 Modelling glioblastoma tumour-host cell interactions using adult brain organotypic slice co-culture

Marques, M. A.; Gangoso, E.; Pollard, S.

10.1101/166967 — cancer biology — Posted on 2017-07-21

474 Switchable amplification of fluoresence from a photosynthetic microbe

Bose, A.; Raja, S. O.; Chowdhury, R.; Nandi, S.; Ray, S.; Bhattacharyya, K.; DASGUPTA, A. K.

10.1101/167122 — biophysics — Posted on 2017-07-21

475 Conformational Dynamics and Energy Landscapes of Ligand Binding in RyR1

Dashti, A.; Ben Hail, D.; Mashayekhi, G.; Schwander, P.; des Georges, A.; Frank, J.; Ourmazd, A.

10.1101/167080 — biophysics — Posted on 2017-07-21

476 Probing tissue-scale deformation by in vivo force application reveals a fast tissue softening during early embryogenesis

D'Angelo, A.; Dierkes, K.; Carolis, C.; Salbreux, G.; Solon, J.

10.1101/167155 — bioinformatics — Posted on 2017-07-21

477 Effective normalization for copy number variation in Hi-C data

Servant, N.; Varoqaux, N.; Heard, E.; Vert, J.-P.; Emmanuel, B.

10.1101/167031 — bioinformatics — Posted on 2017-07-21

478 Fast and memory-efficient noisy read overlapping with KD-trees

Parkhomchuk, D.; Bremges, A.; McHardy, A. C.

10.1101/166835 — bioinformatics — Posted on 2017-07-21

479 BGP: Branched Gaussian processes for identifying gene-specific branching dynamics in single cell data

Boukouvalas, A.; Hensman, J.; Rattray, M.

10.1101/166868 — bioinformatics — Posted on 2017-07-21

480 Shifts in temperature influence how Batrachochytrium dendrobatidis infects amphibian larvae

Bradley, P. W.; Brawner, M. D.; Raffel, T. R.; Rohr, J. R.; Olson, D. H.; Blaustein, A. R.

10.1101/165985 — zoology — Posted on 2017-07-21

481 HOMINID: A framework for identifying associations between host genetic variation and microbiome composition

Lynch, J.; Tang, K.; Priya, S.; Sands, J.; Sands, M.; Tang, E.; Mukherjee, S.; Knights, D.; Blekhman, R.

10.1101/081323 — genomics — Posted on 2017-07-21

482 Quartz-Seq2: a high-throughput single-cell RNA-sequencing method that effectively uses limited sequence reads

Sasagawa, Y.; Danno, H.; Takada, H.; Ebisawa, M.; Hayashi, T.; Kurisaki, A.; Nikaido, I.

10.1101/159384 — genomics — Posted on 2017-07-21

483 Selection on non-antigenic gene segments of seasonal influenza A virus and its impact on adaptive evolution

Raghwani, J.; Thompson, R.; Koelle, K.

10.1101/166082 — evolutionary biology — Posted on 2017-07-21

484 Exact graph-based analysis of scientific articles on clinical trials

Levin, I.

10.1101/164475 — bioinformatics — Posted on 2017-07-21

485 Decision and navigation in mouse parietal cortex

Krumin, M.; Harris, K. D.; Carandini, M.

10.1101/166413 — neuroscience — Posted on 2017-07-21

486 Cortical Representations of Speech in a Multi-talker Auditory Scene

Puvvada, K. C.; Simon, J. Z.

10.1101/124750 — neuroscience — Posted on 2017-07-21

487 A 340/380 nm Light Emitting Diode Illuminator For Fura-2 AM Ratiometric Ca2+ Imaging Of Live Cells With Better Than 5 nM Precision

Tinning, P. W.; Franssen, A. J. P. M.; Hridi, S. U.; Bushell, T. J.; McConnell, G.

10.1101/138495 — neuroscience — Posted on 2017-07-21

488 Metabolic Network Analysis and Metatranscriptomics Reveals Auxotrophies and Nutrient Sources of the Cosmopolitan Freshwater Microbial Lineage acI

Hamilton, J. J.; Garcia, S. L.; Brown, B. S.; Oyserman, B. O.; Moya-Flores, F.; Bertilsson, S.; Malmstrom, R. R.; Forest, K. T.; McMahon, K. D.

10.1101/106856 — microbiology — Posted on 2017-07-21

489 A Specific Non-Bisphosphonate Inhibitor Of The Bifunctional Farnesyl/Geranylgeranyl Diphosphate Synthase In Malaria Parasites

Gisselberg, J. E.; Herrera, Z.; Orchard, L.; Llinas, M.; Yeh, E.

10.1101/134338 — microbiology — Posted on 2017-07-21

490 Evolutionary genetic analysis uncovers multiple species with distinct habitat preferences and antibiotic resistance phenotypes in the Stenotrophomonas maltophilia complex

Ochoa-Sanchez, L. E.; Vinuesa, P.

10.1101/138990 — microbiology — Posted on 2017-07-21

491 Large scale and significant expression from pseudogenes in Sodalis glossinidius - a facultative bacterial endosymbiont

Goodhead, I.; Blow, F.; Brownridge, P.; Hughes, M.; Kenny, J.; Krishna, R.; MacLean, L.; Pongchaikul, P.; Beynon, R.; Darby, A. C.

10.1101/124388 — genomics — Posted on 2017-07-21

492 Tracheophyte genomes keep track of the deep evolution of the Caulimoviridae

Diop, S.; Geering, A. D. W.; Alfama-Depauw, F.; Loaec, M.; Teycheney, P.-Y.; Maumus, F.

10.1101/158972 — evolutionary biology — Posted on 2017-07-21

493 Intracellular Passage Of Na+ In An Active State G Protein Coupled Receptor

Vickery, o. N.; Carvalheda, C. A.; Zaidi, S. A.; Pisliakov, A. V.; Katritch, V.; Zachariae, U.

10.1101/124420 — biophysics — Posted on 2017-07-21

494 scmap - A tool for unsupervised projection of single cell RNA-seq data

Kiselev, V. Y.; Hemberg, M.

10.1101/150292 — bioinformatics — Posted on 2017-07-21

495 Structural covariance networks are coupled to expression of genes enriched in supragranular layers of the human cortex

Romero Garcia, R.; Whitaker, K.; Vasa, F.; Seidlitz, J.; Shinn, M.; Fonagy, P.; Dolan, R.; Jones, P.; Goodyer, I.; Bullmore, E.; Vertes, P.

10.1101/163758 — neuroscience — Posted on 2017-07-21

496 Naked mole-rat acid-sensing ion channel 3 forms non-functional homomers, but functional heteromers

Schuhmacher, L.-N.; Srivats, S.; Callejo, G.; Smith, E. S. J.

10.1101/166272 — neuroscience — Posted on 2017-07-21

497 Metagenomic sequencing suggests arthropod antiviral RNA interference is highly derived, and identifies novel viral small RNAs in a mollusc and a brown alga

Waldron, F. M.; Stone, G. N.; Obbard, D. J.

10.1101/166488 — evolutionary biology — Posted on 2017-07-21

498 A MODULAR PHOTOSYNTHETIC MICROBIAL FUEL CELL WITH INTERCHANGEABLE ALGAESOLAR COMPARTMENTS

Fleury, D.

10.1101/166793 — ecology — Posted on 2017-07-21

499 Differential epigenetic landscapes and transcription factors explain X-linked gene behaviours during X-chromosome reactivation in the mouse inner cell mass

Borensztein, M.; Okamoto, I.; Syx, L.; Guilbaud, G.; Picard, C.; Ancelin, K.; Galupa, R.; Dianbangouaya, P.; Servant, N.; Barillot, E.; Surani, A.; Saitou, M.; Chen, C.-J.; Anastassiadis, K.; Heard, E.

10.1101/166249 — developmental biology — Posted on 2017-07-21

500 A real-time compression library for microscopy images

Balazs, B.; Deschamps, J.; Albert, M.; Ries, J.; Hufnagel, L.

10.1101/164624 — bioinformatics — Posted on 2017-07-21

501 Coat color allele and mtDNA haplotype distributions in Russian cat populations: a citizen-science research

Tsepilov, Y. A.; Zaytseva, O.; Yudayeva, E.; Kasianov, A.; Kulakovskiy, I.; Logacheva, M.; Belayeva, D.; Gracheva, A.; Homenko, K.; Knyazeva, A.; Kolesnikova, E.; Nikolayeva, D.; Bevova, M.; Borodin, P.; Aulchenko, Y.

10.1101/165555 — genetics — Posted on 2017-07-21

502 Linguistically deprived children: meta-analysis of published research underlines the importance of early syntactic language use for normal brain development

Vyshedskiy, A.; Mahapatra, S.; Dunn, R.

10.1101/166538 — developmental biology — Posted on 2017-07-21

503 Frank-Starling Mechanism and Short-Term Adjustment of Cardiac Flow

Chaui-Berlinck, J. G.; Monteiro, L. H. A.

10.1101/166470 — physiology — Posted on 2017-07-21

504 Three-dimensional mobility and muscle attachments in the pectoral limb of the Triassic cynodont Massetognathus pascuali

Lai, P. H.; Pierce, S.; Biewener, A.

10.1101/166587 — paleontology — Posted on 2017-07-21

505 Temporal transitions of spontaneous brain activity in awake rats

Ma, Z.; Zhang, N.

10.1101/166512 — neuroscience — Posted on 2017-07-21

506 Predicting eye movements from deep neural network activity decoded from fMRI responses to natural scenes

O'Connell, T. P.; Chun, M.

10.1101/166421 — neuroscience — Posted on 2017-07-21

507 Machine Learning for Large-Scale Quality Control of 3D Shape Models in Neuroimaging

Petrov, D. M.; Gutman, B. A.; Yu, S.-H.; van Erp, T. G. M.; Turner, J. A.; Schmaal, L.; Veltman, D.; Wang, L.; Alpert, K.; Isaev, D.; Zavaliangos-Petropulu, A.; Ching, C. R. K.; Calhoun, V.; Glahn, D.; Sattertwaite, T.; Andreasen, O. A.; Borgwardt, S.; Howells, F.; Groenewold, N.; Voineskos, A.; Radua, J.; Potkin, S. G.; Crespo-Facorro, B.; Tordesillas-Gutierrez, D.; Shen, L.; Lebedeva, I.; Spalletta, G.; Donohoe, G.; Kochunov, P.; Rosa, P. G. P.; James, A.; Dannlowski, U.; Baune, B. T.; Aleman, A.; Gotlib, I. H.; Walter, H.; Walter, M.; Soares, J. C.; Gur, R. C.; Doan, N. T.; Agartz, I.; West

10.1101/166496 — neuroscience — Posted on 2017-07-21

508 Dramatic expansion of microbial groups that shape the global sulfur cycle

Anantharaman, K.; Jungbluth, S. P.; Kantor, R. S.; Lavy, A.; Warren, L. A.; Rappe, M. S.; Thomas, B. C.; Banfield, J. F.

10.1101/166447 — microbiology — Posted on 2017-07-21

509 Asymmetric compression of representational space for object animacy categorization under degraded viewing conditions

Grootswagers, T.; Ritchie, J. B.; Wardle, S.; Heathcote, A.; Carlson, T. A.

10.1101/166660 — neuroscience — Posted on 2017-07-21

510 When the ostrich-algorithm fails: Blanking method affects spike train statistics

Mottaghi, S.; Joseph, K.; Christ, O.; Feuerstein, T. J.; Hofmann, U. G.

10.1101/166611 — neuroscience — Posted on 2017-07-21

511 Enhancing the Representational Similarity Between Execution and Imagination of Movement Using Network-Based Brain Computer Interfacing

Kordjazi, N.; Koravand, A.; Sveistrup, H.

10.1101/166603 — bioinformatics — Posted on 2017-07-21

512 PaSD-qc: Quality control for single cell whole-genome sequencing data using power spectral density estimation

Sherman, M. A.; Barton, A. R.; Lodato, M.; Vitzthum, C.; Coulter, M.; Walsh, C.; Park, P.

10.1101/166637 — bioinformatics — Posted on 2017-07-21

513 Screening and directed evolution of transporters to improve xylodextrin utilization in the yeast Saccharomyces cerevisiae

Zhang, C.; Acosta-Sampson, L.; Yu, V. Y.; Cate, J. H. D.

10.1101/166678 — synthetic biology — Posted on 2017-07-21

514 Zinc availability modulates plant growth and immune responses via AZI1

Bouain, N.; Satbhai, S. B.; Saenchai, C.; Desbrosses, G.; Berthomieu, P.; Busch, W.; Rouached, H.

10.1101/166645 — plant biology — Posted on 2017-07-21

515 Loss of CHIP Expression Perturbs Glucose Homeostasis and Leads to Type II Diabetes through Defects in Microtubule Polymerization and Glucose Transporter Localization

McDonough, H.; Lenhart, K. C.; Ronnebaum, S. M.; Zhang, C.; An, J.; Portbury, A.; Newgard, C. B.; Willis, M. S.; Patterson, C.; Schisler, J. C.

10.1101/166389 — physiology — Posted on 2017-07-21

516 Locomotor and Reinforcing Effects of Pentedrone, Pentylone and Methylone in Rats

Javadi-Paydar, M.; Nguyen, J. D.; Vandewater, S. A.; Dickerson, T. J.; Taffe, M. A.

10.1101/166579 — neuroscience — Posted on 2017-07-21

517 ISG15 induces IL-10 production in human monocytes and is a biomarker of disease severity during active tuberculosis

dos Santos, P. F.; Van Weyenbergh, J.; Delgobo, M.; Patricio, D. d. O.; Ferguson, B. J.; Guabiraba, R.; Dierckx, T.; Menezes, S. M.; Bafica, A.; Mansur, D. S.

10.1101/166553 — immunology — Posted on 2017-07-21

518 Quantifying cell adhesion dynamics using a custom-made fluid shear device: experiments and model

Maan, R.; Menon, G. I.; Pullarkat, P. A.

10.1101/166371 — biophysics — Posted on 2017-07-21

519 Automated analysis of internally programmed grooming behavior in Drosophila using a k-nearest neighbors classifier

Qiao, B.; Li, C.; Allen, V.; Shirasu-Hiza, M. M.; Syed, S.

10.1101/166561 — bioinformatics — Posted on 2017-07-21

520 Time-gated detection of protein-protein interactions with transcriptional readout

Kim, M. W.; Wang, W.; Sanchez, M. I.; Coukos, R.; Von Zastrow, M.; Ting, A.

10.1101/166462 — bioengineering — Posted on 2017-07-21

521 Two Chinese medicine species constants and the accurate identification of Chinese medicines

zou, h.

10.1101/166140 — pharmacology and toxicology — Posted on 2017-07-20

522 The Latent Semantic Space and Corresponding Brain Regions of the Functional Neuroimaging Literature

Alhazmi, F.; Beaton, D.; Abdi, H.

10.1101/157826 — neuroscience — Posted on 2017-07-20

523 Common neural responses to narrative speech indisorders of consciousness

Iotzov, I.; Fidali, B. C.; Petroni, A.; Conte, M. M.; Schiff, N. D.; Parra, L. C.

10.1101/166405 — neuroscience — Posted on 2017-07-20

524 Context-dependent Requirements for FimH and Other Canonical Virulence Factors in Gut Colonization by Extraintestinal Pathogenic Escherichia coli

Russell, C. W.; Fleming, B. A.; Stenquist, A. T.; Wambaugh, M. A.; Bronner, M. P.; Mulvey, M. A.

10.1101/166108 — microbiology — Posted on 2017-07-20

525 The largest SWI/SNF polyglutamine domain is a pH sensor

Gutierrez, J. I.; Brittingham, G.; Wang, X.; Fenyo, D.; Holt, L. J.

10.1101/165043 — genetics — Posted on 2017-07-20

526 A genetic-based algorithm for recovery: A pilot study

Pickering, C.; Kiely, J.; Suraci, B.; Quigley, C.; Watson, J.

10.1101/166181 — genetics — Posted on 2017-07-20

527 Genome-wide genetic data on ~500,000 UK Biobank participants

Bycroft, C.; Freeman, C.; Petkova, D.; Band, G.; Elliott, L. T.; Sharp, K.; Motyer, A.; Vukcevic, D.; Delaneau, O.; O'Connell, J.; Cortes, A.; Welsh, S.; McVean, G.; Leslie, S.; Donnelly, P.; Marchini, J.

10.1101/166298 — genetics — Posted on 2017-07-20

528 Evolutionary origins and diversification of testis-specific short histone H2A variants in mammals

Molaro, A.; Young, J. M.; Malik, H. S.

10.1101/165936 — evolutionary biology — Posted on 2017-07-20

529 Language evolution to revolution: from a slowly developing finite communication system with many words to infinite modern language

Vyshedskiy, A.

10.1101/166520 — evolutionary biology — Posted on 2017-07-20

530 Detailed Analyses Of Stall Force Generation In Mycoplasma mobile Gliding

Mizutani, M.; Tulum, I.; Kinosita, Y.; Nishizaka, T.; Miyata, M.

10.1101/142133 — biophysics — Posted on 2017-07-20

531 Fusion detection and quantification by pseudoalignment

Melsted, P.; Hateley, S.; Joseph, I. C.; Pimentel, H.; Bray, N. L.; Pachter, L.

10.1101/166322 — bioinformatics — Posted on 2017-07-20

532 An Automated Approach to the Quantitation of Vocalizations and Vocal Learning in the Songbird

Mets, D. G.; Brainard, M. S.

10.1101/166124 — animal behavior and cognition — Posted on 2017-07-20

533 Spatial and temporal distribution of genome divergence among California populations of Aedes aegypti.

Lee, Y.; Collier, T. C.; Conner, W. R.; Hanemaaijer, M. J.; Smartt, C. T.; Slatkin, M.; Chiu, J. C.; Lanzaro, G. C.; Mulligan, F. S.; Cornel, A. J.

10.1101/166629 — genomics — Posted on 2017-07-20

534 Use of a Sibling Subtraction Method (SSM) for Identifying Causal Mutations in C. elegans by Whole-Genome Sequencing

Joseph, B. B.; Blouin, N. A.; Fay, D. S.

10.1101/166355 — genetics — Posted on 2017-07-20

535 A geography aware reconciliation method to investigate host/parasite cospeciation

Berry, V.; Chevenet, F.; Doyon, J.-P.; Jousselin, E.

10.1101/166215 — evolutionary biology — Posted on 2017-07-20

536 Genome expansion and lineage-specific genetic innovations in the world’s largest organisms (Armillaria)

Sipos, G.; Prasanna, A. N.; Walther, M. C.; O'Connor, E.; Balint, B.; Krizsan, K.; Kiss, B.; Hess, J.; Slot, J.; Riley, R.; Boka, B.; Rigling, D.; Barry, K.; Lee, J.; Mihaltseva, S.; Labutti, K.; Lipzen, A.; Waldron, R.; Moloney, N.; Sperisen, C.; Kredics, L.; Vagvolgyi, C.; Patrigniani, A.; Fitzpatrick, D.; Nagy, I.; Doyle, S.; Anderson, J. B.; Grigoriev, I. V.; Guldener, U.; Munsterkotter, M.; Varga, T.; Nagy, L. G.

10.1101/166231 — evolutionary biology — Posted on 2017-07-20

537 Epidemic network analysis for mitigation of invasive pathogens in seed systems: Potato in Ecuador

Buddenhagen, C. E.; Hernandez Nopsa, J. F.; Andersen, K. F.; Andrade-Piedra, J.; Forbes, G. A.; Kromann, P.; Thomas-Sharma, S.; Useche, P.; Garrett, K. A.

10.1101/107367 — ecology — Posted on 2017-07-20

538 GDSCTools for Mining Pharmacogenomic Interactions in Cancer

Cokelaer, T.; Chen, E.; Iorio, F.; Menden, M. P.; Lightfoot, H.; Saez-Rodriguez, J.; Mathew, G. J.

10.1101/166223 — cancer biology — Posted on 2017-07-20

539 Pitch discrimination performance of ferrets and humans on a go/no-go task.

Walker, K. M.; Davies, A.; Bizley, J. K.; Schnupp, J. W.; King, A. J.

10.1101/165852 — animal behavior and cognition — Posted on 2017-07-20

540 Optimal decision making using grid cells under spatial uncertainty

Navarro Schroeder, T.; Towse, B. W.; Burgess, N.; Barry, C.; Doeller, C. F.

10.1101/166306 — neuroscience — Posted on 2017-07-20

541 Distinct roles of cohesin-SA1 and cohesin-SA2 in 3D chromosome organization

Kojic, A.; Ana, C.; De Koninck, M.; Gomez-Lopez, G.; Rodriguez-Corsino, M.; Le Dily, F.; Marti-Renom, M.; Losada, A.

10.1101/166264 — genomics — Posted on 2017-07-20

542 The Emergence of Egalitarianism in a Model of Early Human Societies

Calmettes, G.; Weiss, J.

10.1101/166116 — evolutionary biology — Posted on 2017-07-20

543 Prominent Features Of The Amino Acid Mutation Landscape In Cancer

Szpiech, Z. A.; Strauli, N. B.; White, K. A.; Ruiz, D. G.; Jacobson, M. P.; Barber, D. L.; Hernandez, R. D.

10.1101/136002 — bioinformatics — Posted on 2017-07-20

544 Vermont: a multi-perspective visual interactiveplatform for mutational analysis

Fassio, A.; Martins, P.; Guimaraes, S.; Junior, S.; Ribeiro, V.; de Melo-Minardi, R.; Silveira, S.

10.1101/166348 — bioinformatics — Posted on 2017-07-20

545 Regulatory coiled-coil domains promote head-to-head assemblies of AAA+ chaperones essential for tunable activity control

Mogk, A.

10.1101/166256 — biochemistry — Posted on 2017-07-20

546 The neural representational space of social memory

Dziura, S. L.; Thompson, J. C.

10.1101/130351 — neuroscience — Posted on 2017-07-20

547 SOD1A4V aggregation alters ubiquitin homeostasis in ALS

Farrawell, N. E.; Lambert-Smith, I.; Mitchell, K.; McKenna, J.; McAlary, L.; Ciryam, P.; Vine, K. L.; Saunders, D.; Yerbury, J. J.

10.1101/166165 — molecular biology — Posted on 2017-07-20

548 Whole genome optical mapping reveals multiple fusion events chained by large novel sequences in cancer

Chan, E. K. F.; Petersen, D. C.; Lyons, R. J.; Baldi, B. F.; Papenfuss, T. T.; Thomas, D. M.; Hayes, V. M.

10.1101/166173 — genomics — Posted on 2017-07-20

549 Fantastic beasts and how to sequence them: genomic approaches for obscure model organisms.

Matz, M. V.

10.1101/165928 — genomics — Posted on 2017-07-20

550 Spores and soil from six sides: interdisciplinarity and the environmental biology of anthrax (Bacillus anthracis)

Carlson, C. J.; Getz, W.; Kausrud, K.; Cizauskas, C.; Blackburn, J.; Bustos Carrillo, F. A.; Colwell, R.; Easterday, W. R.; Ganz, H.; Kamath, P.; Okstad, O. A.; Turner, W.; Kolsto, A.-B.; Stenseth, N. C.

10.1101/165548 — ecology — Posted on 2017-07-20

551 Prioritizing 2nd order interactions via support vector ranking using sensitivity indices on time series Wnt measurements

sinha, s.

10.1101/060228 — systems biology — Posted on 2017-07-20

552 Multinucleotide mutations cause false inferences of positive selection

Venkat, A.; Hahn, M. W.; Thornton, J. W.

10.1101/165969 — evolutionary biology — Posted on 2017-07-20

553 Fibroblasts cell lines misclassified as cancer cell lines

de Weck, A.; Bitter, H.; Kauffmann, A.

10.1101/166199 — cancer biology — Posted on 2017-07-20

554 Phenotypic associations of consensus driver genes in hepatocellular carcinoma

Chaudhary, K.; Lu, L.; Poirion, O. B.; Ching, T.; Garmire, L. X.

10.1101/166090 — bioinformatics — Posted on 2017-07-20

555 SQUID: Transcriptomic Structural Variation Detection from RNA-seq

Ma, C.; Shao, M.; Kingsford, C.

10.1101/162776 — bioinformatics — Posted on 2017-07-20

556 Functional network community detection can disaggregate and filter multiple underlying pathways in enrichment analyses

Harrington, L. X.; Way, G. P.; Doherty, J. A.; Greene, C. S.

10.1101/166207 — bioinformatics — Posted on 2017-07-20

557 Monomerization of Far-Red Fluorescent Proteins

Wannier, T. M.; Gillespie, S.; Hutchins, N.; McIsaac, R. S.; Brown, K. S.; Mayo, S. L.

10.1101/162842 — biochemistry — Posted on 2017-07-20

558 Suite2p: beyond 10,000 neurons with standard two-photon microscopy

Pachitariu, M.; Stringer, C.; Dipoppa, M.; Schröder, S.; Rossi, L. F.; Dalgleish, H.; Carandini, M.; Harris, K. D.

10.1101/061507 — neuroscience — Posted on 2017-07-20

559 Ras/MAPK modifier loci revealed by eQTL in C. elegans

Sterken, M. G.; Van Bemmelen van der Plaat, L.; Riksen, J. A. G.; Rodriguez, M.; Schmid, T.; Hajnal, A.; Kammenga, J. E.; Snoek, B. L.

10.1101/127274 — genetics — Posted on 2017-07-20

560 Selection on non-antigenic gene segments of seasonal influenza A virus and its impact on adaptive evolution

Raghwani, J.; Thompson, R.; Koelle, K.

10.1101/166082 — evolutionary biology — Posted on 2017-07-20

561 Evolutionary origins and diversification of testis-specific short histone H2A variants in mammals

Molaro, A.; Young, J. M.; Malik, H. S.

10.1101/165936 — evolutionary biology — Posted on 2017-07-20

562 Procedures for enumerating and uniformly sampling transmission trees for a known phylogeny

Hall, M. D.

10.1101/160812 — evolutionary biology — Posted on 2017-07-20

563 Molecular Dynamics Simulations Of Membrane Deformation Induced By The Amphiphilic Helices Of Epsin, Sar1p And Arf1

Li, Z.-L.

10.1101/140970 — biophysics — Posted on 2017-07-20

564 Detection of long repeat expansions from PCR-free whole-genome sequence data

Dolzhenko, E.; van Vugt, J. J. F. A.; Shaw, R. J.; Bekritsky, M. A.; van Blitterswijk, M.; Narzisi, G.; Ajay, S. J.; Rajan, V.; Kingsbury, Z.; Humphray, S. J.; Schellevis, R. D.; Brands, W. J.; Baker, M.; Rademakers, R.; Kooyman, M.; Tazelaar, G. H. P.; van Es, M. A.; McLaughlin, R.; Sproviero, W.; Shatunov, A.; Jones, A.; Al Khleifat, A.; Pittman, A.; Morgan, S.; Hardiman, O.; Al-Chalabi, A.; Shaw, C.; Smith, B.; Neo, E. J.; Morrison, K.; Shaw, P. J.; Reeves, C.; Winterkorn, L.; Wexler, N. S.; - The US-Venezuela Collaborative Research Group, ; Housman, D. E.; Ng, C.; Li, A.; Taft, R. J.; van

10.1101/093831 — bioinformatics — Posted on 2017-07-20

565 Elemental Accumulation in Kernels of the Maize Nested Association Mapping Panel Reveals Signals of Gene by Environment Interactions

Ziegler, G.; Kear, P.; Wu, D.; Ziyomo, C.; Lipka, A.; Gore, M.; Hoekenga, O.; Baxter, I.

10.1101/164962 — plant biology — Posted on 2017-07-20

566 Multinucleotide mutations cause false inferences of positive selection

Venkat, A.; Hahn, M. W.; Thornton, J. W.

10.1101/165969 — evolutionary biology — Posted on 2017-07-20

567 Genome-wide strategies identify molecular niches regulated by connective tissue-associated transcription factors

Orgeur, M.; Martens, M.; Leonte, G.; Nassari, S.; Bonnin, M.-A.; Börno, S. T.; Timmermann, B.; Hecht, J.; Duprez, D.; Stricker, S.

10.1101/165837 — developmental biology — Posted on 2017-07-20

568 HTSSIP: an R package for analysis of high throughput sequencing data from nucleic acid stable isotope probing (SIP) experiments

Youngblut, N. D.; Barnett, S. E.; Buckley, D. H.

10.1101/166009 — bioinformatics — Posted on 2017-07-20

569 MediSyn: uncertainty-aware visualization of multiple biomedical datasets to support drug treatment selection

He, C.; Micallef, L.; Tanoli, Z.-u.-R.; Kaski, S.; Aittokallio, T.; Jacucci, G.

10.1101/165878 — bioinformatics — Posted on 2017-07-20

570 Shifts in temperature influence how Batrachochytrium dendrobatidis infects amphibian larvae

Bradley, P. W.; Brawner, M. D.; Raffel, T. R.; Rohr, J. R.; Olson, D. H.; Blaustein, A. R.

10.1101/165985 — zoology — Posted on 2017-07-20

571 Whole genome bisulfite sequencing reveals a sparse, but robust pattern of DNA methylation in the Dictyostelium discoideum genome

Steenwyk, J.; St. Denis, J.; Dresch, J.; Larochelle, D.; Drewell, R.

10.1101/166033 — genomics — Posted on 2017-07-20

572 Reverse immunodynamics: a new method to identifying targets of protective immunity.

Spensley, K. J.; Lourenco, J.; Wikramaratna, P. S.; Penman, B. S.; Walker, A.; Smith, A. L.; Pybus, O. G.; Jean, L.; Gupta, S.

10.1101/159483 — epidemiology — Posted on 2017-07-20

573 Practical unidentifiability of a simple vector-borne disease model: implications for parameter estimation and intervention assessment

Kao, Y.-H.; Eisenberg, M. C.

10.1101/164079 — epidemiology — Posted on 2017-07-20

574 Autistic traits and suicidal thoughts, plans and self-harm in late adolescence: population based cohort study

Culpin, I.; Mars, B.; Pearson, R. M.; Golding, J.; Heron, J.; Bubak, I.; Carpenter, P.; Magnusson, C.; Gunnell, D. J.; Rai, D.

10.1101/165860 — epidemiology — Posted on 2017-07-20

575 SANe: The Seed Active Network For Mining Transcriptional Regulatory Programs of Seed Development

Gupta, C.; Krishnan, A.; Collakova, E.; Wolinski, P.; Pereira, A.

10.1101/165894 — bioinformatics — Posted on 2017-07-20

576 Allele-specific multi-sample copy number segmentation

Ross, E. M.; Haase, K.; Van Loo, P.; Markowetz, F.

10.1101/166017 — bioinformatics — Posted on 2017-07-20

577 Inherited chromosomally integrated human herpesvirus 6 genomes are ancient, intact and potentially able to reactivate from telomeres

Zhang, E. J.; Bell, A. J.; Wilkie, G. S.; Suarez, N. M.; Batini, C.; Veal, C. D.; Armendariz-Castillo, I.; Neumann, R.; Cotton, V. E.; Huang, Y.; Porteous, D. J.; Jarrett, R. F.; Davison, A. J.; Royle, N. J.

10.1101/166041 — evolutionary biology — Posted on 2017-07-20

578 The cis-regulatory dynamics of embryonic development at single cell resolution

Cusanovich, D. A.; Reddington, J. P.; Garfield, D. A.; Daza, R.; Marco-Ferreres, R.; Christiansen, L.; Qiu, X.; Steemers, F.; Trapnell, C.; Shendure, J.; Furlong, E. E. M.

10.1101/166066 — genomics — Posted on 2017-07-20

579 PI3Kδ inhibition supports memory T cells with enhanced antitumor fitness

Bowers, J. S.; Majchrzak, K.; Nelson, M. H.; Aksoy, B. A.; Wyatt, M. M.; Smith, A. S.; Bailey, S. R.; Neal, L.; Hammerbacher, J.; Paulos, C. M.

10.1101/166074 — cancer biology — Posted on 2017-07-20

580 A model-based clustering method to detect infectious disease transmission outbreaks from sequence variation

McCloskey, R. M.; Poon, A.

10.1101/165357 — epidemiology — Posted on 2017-07-19

581 Molecular Recognition of Dopamine with Dual Near Infrared Excitation-Emission Two-Photon Microscopy

Del Bonis-O'Donnell, J. T.; Page, R. H.; Beyene, A. G.; Tindall, E. G.; McFarlane, I. R.; Landry, M. P.

10.1101/145912 — neuroscience — Posted on 2017-07-19

582 Nuclease escape elements protect messenger RNA against cleavage by multiple viral endonucleases

Muller, M.; Glaunsinger, B. A.

10.1101/155457 — molecular biology — Posted on 2017-07-19

583 Cooperating yet distinct brain networks engaged during naturalistic paradigms: A meta-analysis of functional MRI results

Bottenhorn, K. L.; Flannery, J. S.; Boeving, E. R.; Riedel, M. C.; Eickhoff, S. B.; Sutherland, M. T.; Laird, A. R.

10.1101/165951 — neuroscience — Posted on 2017-07-19

584 The electron transport chain sensitises Staphylococcus aureus and Enterococcus faecalis to the oxidative burst

Painter, K. L.; Hall, A.; Ha, K. P.; Edwards, A. M.

10.1101/165589 — microbiology — Posted on 2017-07-19

585 Same law, different results: comparative analysis of Endangered Species Act consultations by two federal agencies

Evansen, M.; Li, Y.-W.; Malcom, J.

10.1101/165647 — ecology — Posted on 2017-07-19

586 Effects of agrochemicals on disease severity of Acanthostomum burminis infections (Digenea: Trematoda) in the Asian common toad, Duttaphrynus melanostictus

Jayawardena, U. A.; Rohr, J. R.; Amerasinghe, P. H.; Navaratne, A. N.; Rajakaruna, R. S.

10.1101/165795 — ecology — Posted on 2017-07-19

587 Integrated Human-Virus Metabolic Modelling Predicts Host-Based Antiviral Targets Against Chikungunya, Dengue and Zika Viruses

Aller, S.; Scott, A. E.; Sarkar-Tyson, M.; Soyer, O.

10.1101/165605 — systems biology — Posted on 2017-07-19

588 A parametric texture model based on deep convolutional features closely matches texture appearance for humans

Wallis, T. S. A.; Funke, C. M.; Ecker, A. S.; Gatys, L. A.; Wichmann, F. A.; Bethge, M.

10.1101/165761 — neuroscience — Posted on 2017-07-19

589 Electroencephalographic markers of brain development during sevoflurane anesthesia in children aged 0 to 3 years old

Cornelissen, L.; Kim, S.-E.; Lee, J. M.; Purdon, P. L.; Brown, E. N.; Berde, C. B.

10.1101/165902 — neuroscience — Posted on 2017-07-19

590 Dethroning the Fano Factor: a flexible, model-based approach to partitioning neural variability

Charles, A. S.; Park, M.; Weller, J. P.; Horwitz, G. D.; Pillow, J. W.

10.1101/165670 — neuroscience — Posted on 2017-07-19

591 Dendritic processing of spontaneous neuronal sequences for one-shot learning

Haga, T.; Fukai, T.

10.1101/165613 — neuroscience — Posted on 2017-07-19

592 But will they even wear it? Exploring the tolerability of social communication coaching smartglasses in children and adults with autism.

Keshav, N. U.; Salisbury, J. P.; Vahabzadeh, A.; Sahin, N. T.

10.1101/164376 — neuroscience — Posted on 2017-07-19

593 High-alpha band synchronization across frontal, parietal and visual cortex mediates behavioral and neuronal effects of visuospatial attention

Lobier, M.; Palva, J. M.; Palva, S.

10.1101/165563 — neuroscience — Posted on 2017-07-19

594 Suboptimality in Perceptual Decision Making

Rahnev, D.; Denison, R.

10.1101/060194 — neuroscience — Posted on 2017-07-19

595 Are Caenorhabditis elegans magnetoreceptive?

Keays, D. A.; Landler, L.; Nimpf, S.; Nordmann, G.; Papadaki-Anastasopoulou, A.; Hochstoeger, T.

10.1101/165738 — neuroscience — Posted on 2017-07-19

596 Preliminary Report on the Impact of Smartglasses-based Behavioral and Social Communication Aid on Hyperactivity in Children and Adults with Autism.

Vahabzadeh, A.; Keshav, N. U.; Salisbury, J. P.; Sahin, N. T.

10.1101/165514 — neuroscience — Posted on 2017-07-19

597 An Augmented Reality Social Communication Aid for Children and Adults with Autism: User and caregiver report of safety and lack of negative effects.

Sahin, N. T.; Keshav, N. U.; Salisbury, J. P.; Vahabzadeh, A.

10.1101/164335 — neuroscience — Posted on 2017-07-19

598 Pseudopaline, a staphylopine-like metallophore involved in zinc and nickel uptake in Pseudomonas aeruginosa

Lhospice, S.; Gomez, N. O.; Ouerdane, L.; Brutesco, C.; Ghssein, G.; Hajjar, C.; Liratni, A.; Wang, S.; Richaud, P.; Bleves, S.; Ball, G.; borezee-durant, E.; Lobinski, R.; Pignol, D.; Arnoux, P.; Voulhoux, R.

10.1101/165571 — microbiology — Posted on 2017-07-19

599 Systematic selection of reference genes for normalization of circulating RNA transcripts in pregnant women based on RNA-seq data

Chim, S. S. C.; Wong, K. K. W.; Chung, C. Y. L.; Lam, S. K. W.; Kwok, J. S. L.; Lai, C.-Y.; Cheng, Y. K. Y.; Hui, A. S. Y.; Meng, M.; Chan, O.-K.; Tsui, S. K. W.; Lee, K.-Y.; Chan, T.-F.; Leung, T.-Y.

10.1101/165654 — genomics — Posted on 2017-07-19

600 Measurement Error Correction of Genome-Wide Polygenic Scores in Prediction Samples

Tucker-Drob, E. M.

10.1101/165472 — genetics — Posted on 2017-07-19

601 Extent of adaptation is not limited by unpredictability of the environment in laboratory populations of Escherichia coli

Karve, S. M.; Bhave, D.; Dey, S.

10.1101/165696 — evolutionary biology — Posted on 2017-07-19

602 The Influence of Pesticide Use on Amphibian Chytrid Fungal Infections Varies with Host Life Stage

Rumschlag, S.; Rohr, J. R.

10.1101/165779 — ecology — Posted on 2017-07-19

603 Optimal Point Process Filtering for Birth-Death Model Estimation

Parag, K. V.; Pybus, O.

10.1101/165712 — ecology — Posted on 2017-07-19

604 Zebra diel migrations reduce encounter risk with lions over selection for safe habitats

Courbin, N.; Loveridge, A.; Fritz, H.; Macdonald, D.; Patin, R.; Valeix, M.; Chamaille-Jammes, S.

10.1101/165597 — ecology — Posted on 2017-07-19

605 Chemotherapeutic dose scheduling based on tumor growth rates: the case for low dose metronomic high entropy therapies

West, J.; Newton, P. K.

10.1101/166058 — cancer biology — Posted on 2017-07-19

606 Wisdom of artificial crowds feature selection in untargeted metabolomics: An application to the development of a blood-based diagnostic test for thrombotic myocardial infarction

Trainor, P. J.; Yampolskiy, R. V.; DeFilippis, A. P.

10.1101/165977 — bioinformatics — Posted on 2017-07-19

607 Optimization of Alginante- poly-L-lysine Microencapsules Strength by Box-Behnken Model for CHO Culture in Stirred Tank Bioreactor

Wang, Y.; Li, N.; Sun, D.; He, S.; Mou, L.

10.1101/165464 — bioengineering — Posted on 2017-07-19

608 Compositional shifts in the root microbiota track the life-cycle of field-grown rice plants

Edwards, J.; Santos-Medellin, C.; Liechty, Z.; Nguyen, B.; Lurie, E.; Eason, S.; Phillips, G.; Sundaresan, V.

10.1101/166025 — plant biology — Posted on 2017-07-19

609 Orientation-dependent Dxz4 contacts shape the 3D structure of the inactive X chromosome

Bonora, G.; Deng, X.; Fang, H.; Ramani, V.; Qui, R.; Berletch, J.; Filippova, G. N.; Duan, Z.; Schendure, J.; Noble, W. S.; Disteche, C. M.

10.1101/165340 — molecular biology — Posted on 2017-07-19

610 Transcription start site profiling uncovers divergent transcription and enhancer-associated RNAs in Drosophila melanogaster

Meers, M. P.; Adelman, K.; Duronio, R. J.; Strahl, B. D.; McKay, D. J.; Matera, A. G.

10.1101/165639 — molecular biology — Posted on 2017-07-19

611 Genetics and genomics of social behaviour in a chicken model

Johnsson, M.; Henriksen, R.; Fogelholm, J.; Höglund, A.; Jensen, P.; Wright, D.

10.1101/165167 — genetics — Posted on 2017-07-19

612 Single-Cell RNAseq analysis of infiltrating neoplastic cells at the migrating front of human glioblastoma

Darmanis, S.; Sloan, S. A.; Croote, D.; Mignardi, M.; Chernikova, S.; Samghababi, P.; Zhang, Y.; Neff, N.; Kowarsky, M.; Caneda, C.; Li, G.; Chang, S.; Connolly, I. D.; Li, Y.; Barres, B.; Hayden Gephart, M.; Quake, S. R.

10.1101/165811 — cancer biology — Posted on 2017-07-19

613 SnakeChunks: modular blocks to build Snakemakeworkflows for reproducible NGS analyses

Rioualen, C.; Charbonnier-Khamvongsa, L.; van Helden, J.

10.1101/165191 — bioinformatics — Posted on 2017-07-19

614 Structure of the deactive state of mammalian respiratory complex I

Blaza, J. N.; Vinothkumar, K. R.; Hirst, J.

10.1101/165753 — biochemistry — Posted on 2017-07-19

615 Connectome-harmonic decomposition of human brain activity reveals dynamical repertoire re-organisation under LSD

Atasoy, S.; Roseman, L.; Kaelen, M.; Kringelbach, M. L.; Deco, G.; Carhart-Harris, R.

10.1101/163667 — neuroscience — Posted on 2017-07-19

616 A 340/380 nm Light Emitting Diode Illuminator For Fura-2 AM Ratiometric Ca2+ Imaging Of Live Cells With Better Than 5 nM Precision

Tinning, P. W.; Franssen, A. J. P. M.; Hridi, S. U.; Bushell, T. J.; McConnell, G.

10.1101/138495 — neuroscience — Posted on 2017-07-19

617 Procedures for enumerating and uniformly sampling transmission trees for a known phylogeny

Hall, M. D.

10.1101/160812 — evolutionary biology — Posted on 2017-07-19

618 Evolutionary rewiring of the human regulatory network by waves of genome expansion

Marnetto, D.; Mantica, F.; Molineris, I.; Grassi, E.; Pesando, I.; Provero, P.

10.1101/164434 — evolutionary biology — Posted on 2017-07-19

619 Integrating movement behavior with sexual selection in the lizard Anolis sagrei.

Kamath, A.; Losos, J.

10.1101/164863 — ecology — Posted on 2017-07-19

620 Filopodyan: An Open-Source Pipeline For The Analysis Of Filopodia

Urbancic, V.; Butler, R.; Richier, B.; Peter, M.; Mason, J.; Livesey, F. J.; Holt, C. E.; Gallop, J. L.

10.1101/138610 — cell biology — Posted on 2017-07-19

621 Association Mapping From Sequencing Reads Using K-mers

Rahman, A.; Hallgrimsdottir, I.; Eisen, M. B.; Pachter, L.

10.1101/141267 — bioinformatics — Posted on 2017-07-19

622 Juxtacap Nucleotide Sequence Modulates eIF4E Binding and Translation

Keys, H. R.; Sabatini, D. M.

10.1101/165142 — biochemistry — Posted on 2017-07-19

623 Persistent one-way walking in a circular arena in Drosophila melanogaster Canton-S strain

Xiao, C.; Qiu, S.; Robertson, R. M.

10.1101/145888 — animal behavior and cognition — Posted on 2017-07-19

624 Trial-by-trial neural variability is an individual human trait

Arazi, A.; Gonen-Yaacovi, G.; Dinstein, I.

10.1101/096198 — neuroscience — Posted on 2017-07-19

625 Sub-minute phosphoregulation of cell-cycle systems during Plasmodium gamete formation

Invergo, B.; Brochet, M.; Yu, L.; Choudhary, J.; Beltrao, P.; Billker, O.

10.1101/126276 — microbiology — Posted on 2017-07-19

626 Identification and Functional Characterization of Muscle SatelliteCells in Drosophila

Chaturvedi, D.; Reichert, H.; GUNAGE, R.; VijayRaghavan, K.

10.1101/037838 — developmental biology — Posted on 2017-07-19

627 Causal role of beta oscillations in time estimation

Wiener, M.; Parikh, A.; Krakow, A.; Coslett, H. B.

10.1101/165233 — neuroscience — Posted on 2017-07-19

628 Serial dependence transfers between perceptual objects

Huffman, G.; Pratt, J.; Honey, C. J.

10.1101/165399 — neuroscience — Posted on 2017-07-19

629 Revelation of the Genetic Basis for Convergent Innovative Anal Fin Pigmentation Patterns in Cichlid Fishes

Gu, L.; Zhang, C.; Xia, C.

10.1101/165217 — evolutionary biology — Posted on 2017-07-19

630 LINE-1 repression attenuates degeneration in adult dopaminergic neurons

Blaudin de The, F.-X.; Rekaik, H.; Peze-Heidsieck, E.; Massiani-Beaudoin, O.; Joshi, R. L.; Fuchs, J.; Prochiantz, A.

10.1101/164608 — neuroscience — Posted on 2017-07-19

631 Dynamics of brain activity reveal a unitary recognition memory signal

Weidemann, C. T.; Kahana, M. J.

10.1101/165225 — neuroscience — Posted on 2017-07-19

632 Collaborative environmental DNA sampling from petal surfaces of flowering cherry Cerasus ×- yedoensis 'Somei-yoshino' across the Japanese archipelago

Ohta, T.; Kawashima, T.; Shinozaki, N. O.; Dobashi, A.; Hiraoka, S.; Hoshino, T.; Kanno, K.; Kataoka, T.; Kawashima, S.; Matsui, M.; Nemoto, W.; Nishijima, S.; Suganuma, N.; Suzuki, H.; Taguchi, Y.-h.; Takenaka, Y.; Tanigawa, Y.; Tsuneyoshi, M.; Yoshitake, K.; Sato, Y.; Yamashita, R.; Arakawa, K.; Iwasaki, W.

10.1101/165522 — microbiology — Posted on 2017-07-19

633 Integrative meta-analysis reveals that most yeast proteins are very stable

Wiechecki, K.; Manohar, S.; Silva, G.; Tchourine, K.; Jacob, S.; Valleriani, A.; Vogel, C.

10.1101/165290 — systems biology — Posted on 2017-07-19

634 RhlR, but not RhlI, allows P. aeruginosa bacteria to evade Drosophila Tep4- mediated opsonization

Haller, S.; Franchet, A.; Hakkim, A.; Chen, J.; Drenkard, E.; Yu, S.; Schirmeier, S.; Li, Z.; Ausubel, F. M.; Liegeois, S.; Ferrandon, D.

10.1101/165530 — immunology — Posted on 2017-07-19

635 Polygenic Risk Score of Sporadic Late Onset Alzheimer Disease Reveals a Shared Architecture with the Familial and Early Onset Forms

Del Aguila, J. L.; Saef, B.; Black, K.; Fernandez, M.-V.; John Budde, J.; Ibanez, L.; Kapoor, M.; Tosto, G.; Mayeux, R. P.; Holtzman, D. M.; Fagan, A. M.; Morris, J. C.; Bateman, R. J.; Goate, A. M.; Cruchaga, C.; Harari, O.

10.1101/165209 — genetics — Posted on 2017-07-19

636 ssbio: A Python Framework for Structural Systems Biology

Mih, N.; Brunk, E.; Chen, K.; Catoiu, E.; Sastry, A.; Kavvas, E.; Monk, J. M.; Zhang, Z.; Palsson, B. O.

10.1101/165506 — systems biology — Posted on 2017-07-18

637 TDCPP exposure affects the concentrations of thyroid hormones in zebrafish

Song, J.

10.1101/146092 — pharmacology and toxicology — Posted on 2017-07-18

638 The largest SWI/SNF polyglutamine domain is a pH sensor

Gutierrez, J. I.; Brittingham, G.; Wang, X.; Fenyo, D.; Holt, L. J.

10.1101/165043 — genetics — Posted on 2017-07-18

639 Polygenic hazard score: an enrichment marker for Alzheimer’s associated amyloid and tau deposition

Tan, C. H.; Fan, C. C.; Mormino, E. C.; Sugrue, L. P.; Broce, I. J.; Hess, C. P.; Dillion, W. P.; Bonham, L. W.; Yokoyama, J. S.; Karch, C. M.; Brewer, J. B.; Rabinovici, G. D.; Miller, B. L.; Schellenberg, G. D.; Kauppi, K.; Feldman, H. A.; Holland, D.; McEvoy, L. K.; Hyman, B. T.; Andreassen, O. A.; Dale, A. M.; Desikan, R. S.

10.1101/165373 — genetics — Posted on 2017-07-18

640 Analysis of Ultrafast Transient Absorption Spectroscopy Data using Integrative Data Analysis Platform: 1. Data Processing, Fitting, and Model Selection

Kovrigin, E. L.

10.1101/165498 — biophysics — Posted on 2017-07-18

641 Interplay between antibiotic efficacy and drug-induced lysis underlies enhanced biofilm formation at subinhibitory drug concentrations

Yu, W.; Hallinen, K.; Wood, K.

10.1101/163733 — microbiology — Posted on 2017-07-18

642 l1kdeconv: an R package for peak calling analysis with LINCS L1000 data

Li, Z.; Li, J.; Yu, P.

10.1101/165258 — bioinformatics — Posted on 2017-07-18

643 Widespread sampling biases in herbaria revealed from large-scale digitization

Daru, B. H.; Park, D. S.; Primack, R.; Willis, C. G.; Barrington, D. S.; Whitfeld, T. J. S.; Seidler, T. G.; Sweeney, P. W.; Foster, D. R.; Ellison, A. M.; Davis, C. C.

10.1101/165480 — plant biology — Posted on 2017-07-18

644 Cellular reductase activity in uncultivated Thiomargarita spp. assayed using a redox-sensitive dye

Bailey, J.; Flood, B.; Ricci, E.; Delherbe, N.

10.1101/165381 — microbiology — Posted on 2017-07-18

645 Comparison of whole-genome bisulfite sequencing library preparation strategies identifies sources of biases affecting DNA methylation data

Olova, N.; Krueger, F.; Andrews, S.; Oxley, D. O.; Branco, M. R.; Reik, W.

10.1101/165449 — genomics — Posted on 2017-07-18

646 Drosophila Kruppel homolog 1 represses lipolysis through interaction with dFOXO

Kang, P.; Chang, K.; Liu, Y.; Bousk, M.; Karashchuk, G.; Thakore, R.; Zheng, W.; Post, S.; Brent, C.; Li, S.; Tatar, M.; Bai, H.

10.1101/165456 — genetics — Posted on 2017-07-18

647 Prodomain-Growth Factor Swapping in the Structure of pro-TGF-β1

Zhao, B.; Xu, S.; Dong, X.; Lu, C.; Springer, T. A.

10.1101/165415 — biochemistry — Posted on 2017-07-18

648 Wikipedia as a gateway to biomedical research: The relative distribution and use of citations in the English Wikipedia

Maggio, L. A.; Willinsky, J.; Steinberg, R.; Mietchen, D.; Wass, J.; Dong, T.

10.1101/165159 — scientific communication and education — Posted on 2017-07-18

649 Abnormal Speech Motor Control in Individuals with 16p11.2 Deletions

Demopoulos, C.; Kothare, H.; Mizuiri, D.; Henderson-Sabes, J.; Fregeau, B.; Tjernagel, J.; Houde, J.; Sherr, E.; Nagarajan, S. S.

10.1101/165316 — neuroscience — Posted on 2017-07-18

650 Dynamic cortical representations of perceptual filling-in for missing acoustic rhythm

Cervantes Constantino, F.; Simon, J. Z.

10.1101/165332 — neuroscience — Posted on 2017-07-18

651 Exploring the limits of learning: segregation of information integration and response selection is required for learning a serial reversal task

Mininni, C. J.; Zanutto, B. S.

10.1101/163725 — neuroscience — Posted on 2017-07-18

652 A functional connectome phenotyping dataset including cognitive state and personality measures

Mendes, N.; Oligschlaeger, S.; Lauckner, M. E.; Golchert, J.; Huntenburg, J. M.; Falkiewicz, M.; Ellamil, M.; Krause, S.; Baczkowski, B. M.; Cozatl, R.; Osoianu, A.; Kumral, D.; Pool, J.; Golz, L.; Dreyer, M.; Haueis, P.; Jost, R.; Kramarenko, Y.; Engen, H.; Ohrnberger, K.; Gorgolewski, K. J.; Farrugia, N.; Babayan, A.; Reiter, A.; Schaare, H. L.; Reinelt, J.; Roebbig, J.; Uhlig, M.; Erbey, M.; Gaebler, M.; Smallwood, J.; Villringer, A.; Margulies, D. S.

10.1101/164764 — neuroscience — Posted on 2017-07-18

653 The genetics of the human face: identification of large effect single gene variants

Crouch, D. J.; Winney, B.; Koppen, W. P.; Christmas, W. J.; Hutnik, K.; Day, T.; Meena, D.; Boumertit, A.; Hysi, P.; Nessa, A.; Spector, T. D.; Kittler, J.; Bodmer, W. F.

10.1101/165266 — genetics — Posted on 2017-07-18

654 Are the adverse effects of stressors on amphibians mediated by their effects on stress hormones?

Gabor, C.; Knutie, S.; Roznik, E.; Rohr, J. R.

10.1101/165282 — ecology — Posted on 2017-07-18

655 unitas: the universal tool for annotation of small RNAs

Gebert, D.; Hewel, C.; Rosenkranz, D.

10.1101/165175 — bioinformatics — Posted on 2017-07-18

656 Bayesian Unidimensional Scaling for visualizing uncertainty in high dimensional datasets with latent ordering of observations

Nguyen, L. H.; Holmes, S.

10.1101/163915 — bioinformatics — Posted on 2017-07-18

657 Unexpected Properties of Short Genomic Tandem Repeats

Glotova, I.; Molla, M.; Delcher, A. L.; Kasif, S.

10.1101/165308 — bioinformatics — Posted on 2017-07-18

658 Modeling positional effects of regulatory sequences with spline transformations increases prediction accuracy of deep neural networks

Avsec, Z.; Barekatain, M.; Cheng, J.; Gagneur, J.

10.1101/165183 — bioinformatics — Posted on 2017-07-18

659 Platform for Closed Loop Neuromodulation Based on Dual Mode Biosignals

Mirza, K. B.; Kulasekeram, N.; Cork, S. C.; Bloom, S.; Nikolic, K.; Toumazou, C.

10.1101/163329 — bioengineering — Posted on 2017-07-18

660 Relevance learning via inhibitory plasticity and its implications for schizophrenia

Insel, N.; Richards, B.

10.1101/161331 — neuroscience — Posted on 2017-07-18

661 Vision and locomotion shape the interactions between neuron types in mouse visual cortex

Dipoppa, M.; Ranson, A.; Krumin, M.; Pachitariu, M.; Carandini, M.; Harris, K. D.

10.1101/058396 — neuroscience — Posted on 2017-07-18

662 Final amendment: A plausible explanation for in silico reporting of erroneous MET gene expression in tumor-educated platelets (TEP) intended for "liquid biopsy" of non-small cell lung carcinoma still refutes the TEP-study

Chakraborty, S.

10.1101/148718 — genomics — Posted on 2017-07-18

663 Final amendment: Ambiguous specification of EGFR mutations compounded by nil or negligible fragmented gene counts and erroneous application of the Kappa statistic reiterates doubts on the veracity of the TEP-study

Chakraborty, S.

10.1101/150904 — genomics — Posted on 2017-07-18

664 panX: pan-genome analysis and exploration

Ding, W.; Baumdicker, F.; Neher, R. A.

10.1101/072082 — evolutionary biology — Posted on 2017-07-18

665 Eco-evolutionary buffering: rapid evolution facilitates regional species coexistence despite local priority effects

Wittmann, M. J.; Fukami, T.

10.1101/040659 — ecology — Posted on 2017-07-18

666 Understanding inhibitor resistance in Mps1 kinase through novel biophysical assays and structures

Hiruma, Y.; Koch, A.; Hazraty, N.; Tsakou, F.; Medema, R. H.; Joosten, R. P.; Perrakis, A.

10.1101/112086 — biochemistry — Posted on 2017-07-18

667 Synaptic mechanisms of interference in working memory

Kilpatrick, Z. P.

10.1101/149435 — neuroscience — Posted on 2017-07-18

668 A Comprehensive Assessment of Reproducibility of R-fMRI Metrics on the Impact of Different Strategies for Multiple Comparison Correction and Sample Sizes

Chen, X.; Lu, B.; Yan, C.-G.

10.1101/128645 — neuroscience — Posted on 2017-07-18

669 Gene flow between divergent cereal- and grass-specific lineages of the rice blast fungus Magnaporthe oryzae

Gladieux, P.; Condon, B.; Ravel, S.; Soanes, D.; Nunes Maciel, J. L.; Nhani, A.; Terauchi, R.; Lebrun, M.-H.; Tharreau, D.; Mitchell, T.; Pedley, K. F.; Valent, B.; Talbot, N.; Farman, M.; Fournier, E.

10.1101/161513 — microbiology — Posted on 2017-07-18

670 DroNc-Seq: Deciphering cell types in human archived brain tissues by massively-parallel single nucleus RNA-seq

Habib, N.; Basu, A.; Avraham-Davidi, I.; Burks, T.; Choudhury, S. R.; Aguet, F.; Gelfand, E.; Ardlie, K.; Weitz, D. A.; Rozenblatt-Rosen, O.; Zhang, F.; Regev, A.

10.1101/115196 — genomics — Posted on 2017-07-18

671 TreeTime: maximum likelihood phylodynamic analysis

Sagulenko, P.; Puller, V.; Neher, R.

10.1101/153494 — evolutionary biology — Posted on 2017-07-18

672 Sweep Dynamics (SD) plots: Computational identification of selective sweeps to monitor the adaptation of influenza A viruses

Klingen, T. R.; Reimering, S.; Loers, J.; Mooren, K.; Klawonn, F.; Krey, T.; Gabriel, G.; McHardy, A.

10.1101/110528 — bioinformatics — Posted on 2017-07-18

673 Combining multiple functional annotation tools increases completeness of metabolic annotation

Griesemer, M.; Kimbrel, J. A.; Zhou, C. E.; Navid, A.; D'haeseleer, P.

10.1101/160887 — bioinformatics — Posted on 2017-07-18

674 Full-length mRNA sequencing uncovers a widespread coupling between transcription and mRNA processing

Anvar, S. Y.; Allard, G.; Tseng, E.; Sheynkman, G. M.; de Klerk, E.; Vermaat, M.; Yin, R. H.; Johansson, H. E.; Ariyurek, Y.; den Dunnen, J. T.; Turner, S. W.; 't Hoen, P. A. C.

10.1101/165092 — molecular biology — Posted on 2017-07-18

675 Integrated analysis of single cell transcriptomic data across conditions, technologies, and species

Butler, A.; Satija, R.

10.1101/164889 — genomics — Posted on 2017-07-18

676 Innovative assembly strategy contributes to the understanding of evolution and conservation genetics of the critically endangered Solenodon paradoxus from the island of Hispaniola

Grigorev, K.; Kliver, S.; Dobrynin, P.; Komissarov, A.; Wolfsberger, W.; Krasheninnikova, K.; Afanador-Hernandez, Y. M.; Paulino, L. A.; Carreras, R.; Rodriguez, L. E.; Nunez, A.; Silva, F.; Hernandez-Martich, D.; Majeske, A. J.; Antunes, A.; Roca, A. L.; O'Brien, S. J.; Martinez-Cruzado, J. C.; Oleksyk, T. K.

10.1101/164574 — evolutionary biology — Posted on 2017-07-18

677 A floristic survey of Fair Isle

Quinteros Penafiel, C. V.; Riddiford, N. J.; Twyford, A. D.

10.1101/164566 — ecology — Posted on 2017-07-18

678 Atrazine and amphibians: Data re-analysis and a summary of the controversy

Rohr, J. R.

10.1101/164673 — ecology — Posted on 2017-07-18

679 Drones count wildlife more accurately and precisely than humans

Hodgson, J. C.; Mott, R.; Baylis, S. M.; Pham, T. T.; Wotherspoon, S.; Kilpatrick, A. D.; Raja Segaran, R.; Reid, I.; Terauds, A.; Koh, L. P.

10.1101/165019 — ecology — Posted on 2017-07-18

680 Mono-ubiquitination of syntaxin 3 leads to retrieval from the basolateral plasma membrane and facilitates cargo recruitment to exosomes

Giovannone, A. J.; Reales, E.; Bhattaram, P.; Fraile-Ramos, A.; Weimbs, T.

10.1101/164996 — cell biology — Posted on 2017-07-18

681 Juxtacap Nucleotide Sequence Modulates eIF4E Binding and Translation

Keys, H. R.; Sabatini, D. M.

10.1101/165142 — biochemistry — Posted on 2017-07-18

682 Engineered CRISPR-Cas9 system enables noiseless, fine-tuned and multiplexed repression of bacterial genes

Vigouroux, A.; Oldewurtel, E.; Cui, L.; van Teeffelen, S.; Bikard, D.

10.1101/164384 — synthetic biology — Posted on 2017-07-18

683 Conditionally rare taxa contribute but do not account for prokaryotic community changes in soils

Kaminsky, R.; Morales, S. E.

10.1101/165001 — microbiology — Posted on 2017-07-18

684 Isolation and characterization of BpL1, a broad acting lytic bacteriophage against Brucella

Gupta, V.; Saxena, H. M.

10.1101/165076 — microbiology — Posted on 2017-07-18

685 Phylogenomics illuminates the backbone of the Myriapoda Tree of Life and reconciles morphological and molecular phylogenies

Fernandez, R.; Edgecombe, G. D.; Giribet, G.

10.1101/164616 — evolutionary biology — Posted on 2017-07-18

686 Multimodal Sensorimotor System in Unicellular Zoospores of a Fungus

Swafford, A.; Oakley, T.

10.1101/165027 — cell biology — Posted on 2017-07-18

687 VolcanoR - web service to produce volcano plots and do basic enrichment analysis

Naumov, V.; Balashov, I.; Lagutin, V.; Borovikov, P.; Alexeev, A.

10.1101/165100 — bioinformatics — Posted on 2017-07-18

688 Sensitive and robust assessment of ChIP-seq read distribution using a strand-shift profile

Nakato, R.; Shirahige, K.

10.1101/165050 — bioinformatics — Posted on 2017-07-18

689 Correcting batch effects in single-cell RNA sequencing data by matching mutual nearest neighbours.

Haghverdi, L.; Lun, A. T. L.; Morgan, M. D.; Marioni, J. C.

10.1101/165118 — bioinformatics — Posted on 2017-07-18

690 The influence of higher-order epistasis on biological fitness landscape topography

Weinreich, D. M.; Lan, Y.; Jaffe, J.; Heckendorn, R. B.

10.1101/164798 — evolutionary biology — Posted on 2017-07-18

691 A central role for boom-bust cycles in maintaining genetic variation in fluctuating environments

Bertram, J.; Masel, J.

10.1101/164723 — evolutionary biology — Posted on 2017-07-18

692 A global synthesis of phenological responses to climate change

Cohen, J.; Lajeunesse, M.; Rohr, J. R.

10.1101/164806 — ecology — Posted on 2017-07-18

693 Thermal mismatches explain how climate change and infectious disease drove widespread amphibian extinctions

Cohen, J.; Civitello, D. J.; Venesky, M. D.; McMahon, T. A.; Rohr, J. R.

10.1101/164814 — ecology — Posted on 2017-07-18

694 Principles of transcription factor traffic on folded chromatin

Cortini, R.; Filion, G.

10.1101/164541 — biophysics — Posted on 2017-07-18

695 Three Decades as an NSF REU Site: Lessons and Recommendations

McDevitt, A. L.; Patel, M. V.; Ellison, A.

10.1101/162289 — scientific communication and education — Posted on 2017-07-18

696 In Rift Valley settings with a feedback loop, assortative mating for versatility predicts hominin brain enlargement in some detail

Calvin, W. H.

10.1101/164780 — neuroscience — Posted on 2017-07-18

697 Imaging of neural oscillations with embedded inferential and group prevalence statistics.

Donhauser, P. W.; Florin, E.; Baillet, S.

10.1101/164731 — neuroscience — Posted on 2017-07-18

698 Hepatitis B Virus Infection as a Neglected Tropical Disease

O'Hara, G. A.; McNaughton, A. L.; Maponga, T.; Jooste, P.; Ocama, P.; Chilengi, R.; Mokaya, J.; Liyayi, M. I.; Wachira, T.; Gikungi, D.; Burbridge, L.; O'Donnell, D.; Akiror, C. S.; Sloan, D.; Torimiro, J.; Yindom, L.-M.; Walton, R.; Andersson, M.; Marsh, K.; Newton, R.; Matthews, P. C.

10.1101/164491 — microbiology — Posted on 2017-07-18

699 PIK3CAH1047R-induced paradoxical ERK activation results in resistance to BRAFV600E specific inhibitors in BRAFV600E PIK3CAH1047R double mutant thyroid tumors.

Roelli, M. A.; Ruffieux-Daidie, D.; Stooss, A.; ElMokh, O.; Phillips, W. A.; Dettmer, M. S.; Charles, R.-P.

10.1101/164533 — cancer biology — Posted on 2017-07-18

700 OPUS-CSF: A C-atom-based Scoring Function for Ranking Protein Structural Models

Xu, G.; Ma, T.; Zang, T.; Wang, Q.; Ma, J.

10.1101/163972 — biophysics — Posted on 2017-07-18

701 Defining the synaptic mechanisms that tune CA3-CA1 reactivation during sharp-wave ripples.

Malerba, P.; Jones, M. W.; Bazhenov, M.

10.1101/164699 — neuroscience — Posted on 2017-07-18

702 Neural network models of the tactile system develop first-order units with spatially complex receptive fields

Zhao, C. W.; Daley, M. J.; Pruszynski, J. A.

10.1101/164954 — neuroscience — Posted on 2017-07-17

703 The RacGAP βChimaerin is essential for cerebellar granule cell migration

Estep, J. A.; Wong, W.; Wong, Y.-C. E.; Loui, B. M.; Riccomagno, M. M.

10.1101/164897 — neuroscience — Posted on 2017-07-17

704 Cortical Tonic Inhibition Regulates the Expression of Spike-and-Wave Discharges Associated with Absence Epilepsy.

Mangan, K. P.; Nelson, A. B.; Petrou, S.; Cirelli, C.; Jones, M. V.

10.1101/164947 — neuroscience — Posted on 2017-07-17

705 Narrow-sense heritability estimation of complex traits using identity-by-descent information.

Evans, L.; Tahmasbi, R.; Jones, M.; Vrieze, S.; Abecasis, G.; Das, S.; Bjelland, D.; deCandia, T.; - Haplotype Reference Consortium, ; Yang, J.; Goddard, M.; Visscher, P.; Keller, M.

10.1101/164848 — genetics — Posted on 2017-07-17

706 ShinyGPAS: Interactive genomic prediction accuracy simulator based on deterministic formulas

Morota, G.

10.1101/164772 — genetics — Posted on 2017-07-17

707 Integrating movement behavior with sexual selection in the lizard Anolis sagrei.

Kamath, A.; Losos, J.

10.1101/164863 — ecology — Posted on 2017-07-17

708 A Mixed Periodic Paralysis & Myotonia Mutant, P1158S, Imparts pH Sensitivity in Skeletal Muscle Voltage-gated Sodium Channels

Ghovanloo, M.-R.; Abdelsayed, M.; Peters, C. H.; Ruben, P. C.

10.1101/164988 — biophysics — Posted on 2017-07-17

709 Excitatory Motor Neurons are Local Central Pattern Generators in an Anatomically Compressed Motor Circuit for Reverse Locomotion

Gao, S.; Guan, S. A.; Fouad, A. D.; Meng, J.; Huang, Y.-C.; Li, Y.; Alcaire, S.; Hung, W.; Kawano, T.; Lu, Y.; Qi, Y. B.; Jin, Y.; Alkema, M.; Fang-Yen, C.; Zhen, M.

10.1101/135418 — neuroscience — Posted on 2017-07-17

710 Cell Type Specific Survey of Epigenetic Modifications by Tandem Chromatin Immunoprecipitation Sequencing

Mito, M.; Kadota, M.; Tanaka, K.; Furuta, Y.; Abe, K.; Iwasaki, S.; Nakagawa, S.

10.1101/163568 — molecular biology — Posted on 2017-07-17

711 Beta-Band Oscillations without Pathways: the opposing Roles of D2 and D5 Receptors

Lienard, J. F.; Cos, I.; Girard, B.

10.1101/161661 — neuroscience — Posted on 2017-07-17

712 Delineating the macroscale areal organization of the macaque cortex in vivo

Xu, T.; Falchier, A.; Sullivan, E.; Linn, G.; Ramirez, J.; Ross, D.; Feczko, E.; Opitz, A.; Bagley, J.; Sturgeon, D.; Earl, E.; Miranda-Domingue, O.; Perrone, A.; Craddock, C.; Schroeder, C.; Colcombe, S.; Fair, D.; Milham, M.

10.1101/155952 — neuroscience — Posted on 2017-07-17

713 The Cryo-Electron Microscopy Structure of the Type 1 Chaperone-Usher Pilus Rod

Hospenthal, M. K.; Costa, T. R.; Redzej, A.; Lillington, J.; Waksman, G.

10.1101/164657 — molecular biology — Posted on 2017-07-17

714 Resilience mechanisms of small intestinal lactobacilli to the toxicity of soybean oil fatty acids

Di Rienzi, S. C.; Jacobson, J.; Kennedy, E. A.; Bell, M. E.; Shi, Q.; Waters, J. L.; Lawrence, P.; Brenna, J. T.; Walter, J.; Ley, R. E.

10.1101/164715 — microbiology — Posted on 2017-07-17

715 Degradation of benzene by the heavy-metal resistant bacterium Cupriavidus metallidurans CH34 reveals its catabolic potential for aromatic compounds

Millacura, F. A.; Cardenas, F.; Mendez, V.; Seeger, M.; Rojas, L. A.

10.1101/164517 — microbiology — Posted on 2017-07-17

716 Dissecting Population Substructure in India via Correlation Optimization of Genetics and Geodemographics

Bose, A.; Platt, D. E.; Parida, L.; Paschou, P.; Drineas, P.

10.1101/164640 — genomics — Posted on 2017-07-17

717 Estimating inflation in GWAS summary statistics due to variance distortion from cryptic relatedness

Holland, D.; Fan, C.-C.; Frei, O.; Shadrin, A. A.; Smeland, O. B.; Sundar, V. S.; Andreassen, O. A.; Dale, A. M.

10.1101/164939 — genomics — Posted on 2017-07-17

718 Resolving systematic errors in widely-used enhancer activity assays in human cells enables genome-wide functional enhancer characterization

Muerdter, F.; Boryn, Łukasz M.; Woodfin, A. R.; Neumayr, C.; Rath, M.; Zabidi, M. A.; Pagani, M.; Haberle, V.; Kazmar, T.; Catarino, R. R.; Schernhuber, K.; Arnold, C. D.; Stark, A.

10.1101/164590 — genomics — Posted on 2017-07-17

719 DNA barcoding British Euphrasia reveals deeply divergent polyploids but lack of species-level resolution

Wang, X.; Gussarova, G.; Ruhsam, M.; de Vere, N.; Metherell, C.; Hollingsworth, P. M.; Twyford, A. D.

10.1101/164681 — evolutionary biology — Posted on 2017-07-17

720 Questioning the role of selected somatic PIK3C2B mutations in squamous non-small cell lung cancer oncogenesis.

Kind, M.; Klukowska-Rötzler, J.; Berezowska, S.; Arcaro, A.; Charles, R.-P.

10.1101/164749 — cancer biology — Posted on 2017-07-17

721 TASI: A software tool for spatial-temporal quantification of tumor spheroid dynamics

Hou, Y.; Konen, J.; Brat, D. J.; Marcus, A. I.; Cooper, L. A.

10.1101/164921 — bioinformatics — Posted on 2017-07-17

722 Mechanosensing of Integrin α6 and EGFR Converges atCalpain 2

Schwartz, A. D.; Hall, C. L.; Barney, L. E.; Babbitt, C. C.; Peyton, S. R.

10.1101/164525 — bioengineering — Posted on 2017-07-17

723 Double-strand breaks are not the main cause of spontaneous sister chromatid exchange in wild-type yeast cells

Claussin, C.; Porubsky, D.; Spierings, D. C. J.; Halsema, N.; Rentas, S.; Guryev, V.; Lansdorp, P.; Chang, M.

10.1101/164756 — molecular biology — Posted on 2017-07-17

724 Evolution within the fungal genus Verticillium is characterized by chromosomal rearrangement and gene loss

Shi, X.; Faino, L.; van den Berg, G.; Thomma, B.; Seidl, M.

10.1101/164665 — microbiology — Posted on 2017-07-17

725 Exact graph-based analysis of scientific articles on clinical trials

Levin, I.

10.1101/164475 — bioinformatics — Posted on 2017-07-17

726 Transition metal binding selectivity in proteins and its correlation with the phylogenomic classification of the cation diffusion facilitator protein family

Barber-Zucker, S.; Shaanan, B.; Zarivach, R.

10.1101/164509 — biochemistry — Posted on 2017-07-17

727 Engineering post-translational proofreading to discriminate non-standard amino acids

Kunjapur, A. M.; Stork, D. A.; Kuru, E.; Vargas-Rodriguez, O.; Landon, M.; Söll, D.; Church, G. M.

10.1101/158246 — synthetic biology — Posted on 2017-07-17

728 An open resource for transdiagnostic research in pediatric mental health and learning disorders

Alexander, L. M.; Escalera, J.; Ai, L.; Andreotti, C.; Febre, K.; Mangone, A.; Vega Potler, N.; Langer, N.; Alexander, A.; Kovacs, M.; Litke, S.; O'Hagan, B.; Andersen, J.; Bronstein, B.; Bui, A.; Bushey, M.; Butler, H.; Castagna, V.; Camacho, N.; Chan, E.; Citera, D.; Clucas, J.; Cohen, S.; Dufek, S.; Eaves, M.; Fradera, B.; Gardner, J.; Grant-Villegas, N.; Green, G.; Gregory, C.; Hart, E.; Horton, M.; Harris, S.; Lord, C.; Kahn, D.; Kabotyanski, K.; Karmel, B.; Kelly, S. P.; Kleinman, K.; Koo, B.; Kramer, E.; Lennon, E.; Mantello, G.; Margolis, A.; Merikangas, K.; Milham, J.; Minniti, G.; Ne

10.1101/149369 — neuroscience — Posted on 2017-07-17

729 The effect of depth variation on disparity tasks in natural scenes

Iyer, A. V.; Burge, J.

10.1101/162222 — neuroscience — Posted on 2017-07-17

730 Diverse Streptococcus pneumoniae strains drive a MAIT cell response through MR1-dependent and cytokine-driven pathways

Kurioka, A.; van Wilgenburg, B.; Javan, R. R.; Hoyle, R.; van Tonder, A. J.; Harrold, C. L.; Leng, T.; Howson, L. J.; Shepherd, D.; Cerundolo, V.; Brueggemann, A. B.; Klenerman, P.

10.1101/158204 — immunology — Posted on 2017-07-17

731 Why are tropical mountain passes ‘low’ for some species? Genetic and stable-isotope tests for differentiation, migration, and expansion in elevational generalist songbirds

Gadek, C. R.; Newsome, S. D.; Beckman, E. J.; Chavez, A. N.; Galen, S. C.; Bautista, E.; Witt, C. C.

10.1101/161380 — evolutionary biology — Posted on 2017-07-17

732 Genealogical properties of subsamples in highly fecund populations

Eldon, B.; Freund, F.; Etheridge, A. M.

10.1101/164418 — evolutionary biology — Posted on 2017-07-17

733 Hitchhiking on the Frontier: Accelerating Eusociality and other Improbable Evolutionary Outcomes by Trait Hitchhiking in a Boom-and-Bust Feedback Loop

Calvin, W. H.

10.1101/053819 — evolutionary biology — Posted on 2017-07-17

734 Cell-nonautonomously tunable actomyosin flowsorient distinct cell division axes

Sugioka, K.; Bowerman, B.

10.1101/164186 — cell biology — Posted on 2017-07-17

735 NanoJ-SQUIRREL: quantitative mapping and minimisation of super-resolution optical imaging artefacts

Culley, S.; Albrecht, D.; Jacobs, C.; Pereira, P. M.; Leterrier, C.; Mercer, J.; Henriques, R.

10.1101/158279 — biophysics — Posted on 2017-07-17

736 Prioritizing 2nd and 3rd order interactions via support vector ranking using sensitivity indices on time series Wnt measurements

Sinha, S.

10.1101/060228 — systems biology — Posted on 2017-07-17

737 Meta-analysis of exome array data identifies six novel genetic loci for lung function

10.1101/164426 — genetics — Posted on 2017-07-17

738 Knowledge-guided gene prioritization reveals new insights into the mechanisms of chemoresistance

Emad, A.; Cairns, J.; Kalari, K. R.; Wang, L.; Sinha, S.

10.1101/090027 — bioinformatics — Posted on 2017-07-17

739 Songbird organotypic culture as an in vitro model for interrogating sparse sequencing networks

Shen, J.; Blute, T.; Liberti, W. A.; Yen, W.; Liberti, D. C.; Kotten, D. N.; Cruz-Martin, A.; Gardner, T.

10.1101/164228 — neuroscience — Posted on 2017-07-17

740 Reconstruction and visualization of large-scale volumetric models of neocortical circuits for physically-plausible in silico optical studies

Abdellah, M.; Hernando, J.; Antille, N.; Eilemann, S.; Markram, H.; Schurmann, F.

10.1101/164483 — neuroscience — Posted on 2017-07-17

741 NMR Analysis Of The Interaction Of Ethanol With The Nicotinic Acetylcholine Receptor

Naugler, D.; Cushley, R. J.; Clark-Lewis, I.

10.1101/139717 — molecular biology — Posted on 2017-07-17

742 Notes On Synthesis Of Perdeutero-5-13C,5,5,5-Trifluoroisoleucine VI

Naugler, D.; Prosser, R. S.

10.1101/140681 — molecular biology — Posted on 2017-07-17

743 Sub-kb resolution Hi-C in D. melanogaster reveals conserved characteristics of TADs between insect and mammalian cells

Wang, Q.; Sun, Q.; Czajkowsky, D. M.; Shao, Z.

10.1101/164467 — genomics — Posted on 2017-07-17

744 Genomics of Mesolithic Scandinavia reveal colonization routes and high-latitude adaptation

10.1101/164400 — genomics — Posted on 2017-07-17

745 A High HIV-1 Strain Variability in London, UK, Revealed by Full-Genome Analysis: Results from the ICONIC Project

Yebra, G.; Frampton, D.; Gallo Cassarino, T.; Raffle, J.; Hubb, J.; Ferns, B.; Kozlakidis, Z.; Hayward, A.; Kellam, P.; Pillay, D.; Clark, D.; Nastouli, E.; Leigh Brown, A. J.

10.1101/139642 — genomics — Posted on 2017-07-17

746 Genome-wide Association Studies Reveal Similar Genetic Architecture with Shared and Unique QTL for Bacterial Cold Water Disease Resistance in Two Rainbow Trout Breeding Populations

Vallejo, R. L.; Gao, G.; Liu, S.; Fragomeni, B. O.; Hernandez, A. G.; Parsons, J. E.; Martin, K. E.; Evenhuis, J. P.; Welch, T. J.; Leeds, T. D.; Wiens, G. D.; Palti, Y.

10.1101/163964 — genetics — Posted on 2017-07-17

747 Evolutionary rewiring of the human regulatory network by waves of genome expansion

Marnetto, D.; Mantica, F.; Molineris, I.; Grassi, E.; Pesando, I.; Provero, P.

10.1101/164434 — evolutionary biology — Posted on 2017-07-17

748 Genealogical properties of subsamples in highly fecund populations

Eldon, B.; Freund, F.; Etheridge, A. M.

10.1101/164418 — evolutionary biology — Posted on 2017-07-17

749 Mitochondrial genomes infer phylogenetic relationships among the oldest extant winged insects (Palaeoptera)

Rutschmann, S.; Chen, P.; Zhou, C.; Monaghan, M. T.

10.1101/164459 — evolutionary biology — Posted on 2017-07-17

750 Model-based analysis of experimental hut data elucidates multifaceted effects of a volatile chemical on Aedes aegypti mosquitoes

ten Bosch, Q. A.; Castro-Llanos, F.; Manda, H.; Morrison, A. C.; Grieco, J. P.; Achee, N. L.; Perkins, A.

10.1101/164293 — ecology — Posted on 2017-07-17

751 Compensation For Chronic Oxidative Stress In ALADIN Null Mice

Jühlen, R.; Peitzsch, M.; Gärtner, S.; Landgraf, D.; Eisenhofer, G.; Huebner, A.; Koehler, K.

10.1101/164442 — cell biology — Posted on 2017-07-17

752 Cell-nonautonomously tunable actomyosin flowsorient distinct cell division axes

Sugioka, K.; Bowerman, B.

10.1101/164186 — cell biology — Posted on 2017-07-17

753 Rapid DNA Replication Origin Licensing Protects Stem Cell Pluripotency

Matson, J. P.; Dumitru, R.; Coryell, P.; Baxley, R. M.; Chen, W.; Twaroski, K.; Webber, B. R.; Tolar, J.; Bielinsky, A.-K.; Purvis, J.; Cook, J. G.

10.1101/164368 — cell biology — Posted on 2017-07-17

754 Collective membrane dynamics emerging from curvature-dependent spatial coupling

Wu, Z.; Su, M.; Tong, C.; Wu, M.; Liu, J.

10.1101/164392 — biophysics — Posted on 2017-07-17

755 pyABC: distributed, likelihood-free inference

Klinger, E.; Rickert, D.; Hasenauer, J.

10.1101/162552 — bioinformatics — Posted on 2017-07-17

756 The neural basis of precise visual short-term memory for complex recognisable objects

Veldsman, M.; Mitchell, D. J.; Cusack, R.

10.1101/085068 — neuroscience — Posted on 2017-07-17

757 NextSV: a computational pipeline for structural variation analysis from low-coverage long-read sequencing

Fang, L.; Hu, J.; Wang, D.; Wang, K.

10.1101/092544 — genomics — Posted on 2017-07-17

758 Genome-Wide Mechanisms of Lifespan Extension by Dietary Restriction in Yeast

Campos, S. E.; Garay, E.; Avelar-Rivas, J. A.; Juarez-Reyes, A.; DeLuna, A.

10.1101/126797 — genetics — Posted on 2017-07-17

759 The combinatorics of discrete time-trees: theory and open problems

Gavryushkin, A.; Whidden, C.; Matsen, F.

10.1101/063362 — evolutionary biology — Posted on 2017-07-17

760 GAS Power Calculator: web-based power calculator for genetic association studies

Johnson, J. L.; Abecasis, G. R.

10.1101/164343 — bioinformatics — Posted on 2017-07-17

761 Comparative genomic analyses highlight the contribution of pseudogenized protein-coding genes to human lincRNAs

Liu, W.-H.; Tsai, Z. T.-Y.; Tsai, H.-K.

10.1101/163626 — bioinformatics — Posted on 2017-07-17

762 Intraclass correlation: improved modeling approaches and applications for neuroimaging

Chen, G.; Taylor, P. A.; Haller, S. P.; Kircanski, K.; Stoddard, J.; Pine, D. S.; Leibenluft, E.; Brotman, M. A.; Cox, R. W.

10.1101/164327 — neuroscience — Posted on 2017-07-16

763 Voltage-gated sodium channels in neocortical pyramidal neurons display Cole-Moore activation kinetics

Almog, M.; Barkai, T.; Lampert, A.; Korngreen, A.

10.1101/164210 — neuroscience — Posted on 2017-07-16

764 Effect of the Sex Chromosomes on Trait Dominance in the Shape of the Copulatory System in Drosophila virilis x D. lummei Progenies

Kulikov, A.; Sorokina, S.; Melnikov, A.; Gornostaev, N.; Lazebny, O.

10.1101/161224 — evolutionary biology — Posted on 2017-07-16

765 Conformational changes in Arp2/3 complex induced by ATP, WASp-VCA and actin filaments

Espinoza Sanchez, S.; Metskas, L. A.; Chou, S. Z.; Rhoades, E.; Pollard, T. D.

10.1101/164319 — biophysics — Posted on 2017-07-16

766 Complexity-Entropy maps as a tool for the characterization of the clinical electrophysiological evolution of patients under pharmacological treatment with psychotropic drugs

Diaz, J. M.; Mateos, D. M.; Boyallian, C.

10.1101/164236 — neuroscience — Posted on 2017-07-16

767 Additive genetic and environmental contributions to the longitudinal association between violent victimization and depression

Kavish, N. A.; Connolly, E. J.; Boutwell, B. B.

10.1101/164194 — genetics — Posted on 2017-07-16

768 Natural Selection has Shaped Coding and Non-coding Transcription in Primate CD4+ T-cells

Danko, C. G.; Choate, L. A.; Marks, B. A.; Rice, E. J.; Wang, Z.; Chu, T.; Martins, A. L.; Dukler, N.; Coonrod, S. A.; Tait Wojno, E. D.; Lis, J. T.; Kraus, W. L.; Siepel, A.

10.1101/083212 — genomics — Posted on 2017-07-16

769 Intrinsically disordered linkers determine the interplay between phase separation and gelation in multivalent proteins

Harmon, T. S.; Holehouse, A. S.; Rosen, M. K.; Pappu, R. V.

10.1101/164301 — cell biology — Posted on 2017-07-16

770 An efficient experiment design helps to identify differential expressed genes (DEGs) in RNA-seq data in studies of plant qualitative traits

Li, X.; Song, Z.; Bao, Y.; Wang, H.

10.1101/164202 — plant biology — Posted on 2017-07-16

771 siRNA biogenesis, DNA methylation and target locus silencing are distinct and separable Pol IV sub-functions differentially dependent on the largest subunit's CTD

Wendte, J.; Haag, J.; Pontes, O.; Singh, J.; Metcalf, S.; Pikaard, C. S.

10.1101/164285 — molecular biology — Posted on 2017-07-16

772 The activation loop residue serine 173 of S.pombe Chk1 kinase is critical for the response to DNA replication stress

Coulton, N.; Caspari, T.

10.1101/164244 — cell biology — Posted on 2017-07-16

773 Modelling neuroanatomical variation due to age and sex during childhood and adolescence

Ball, G.; Adamson, C.; Beare, R.; Seal, M. L.; - the Pediatric Imaging, Neurocognition and Genetics,

10.1101/126441 — neuroscience — Posted on 2017-07-16

774 Local-Global Parcellation of the Human Cerebral Cortex From Intrinsic Functional Connectivity MRI

Schaefer, A.; Kong, R.; Gordon, E. M.; Laumann, T. O.; Zuo, X.-N.; Holmes, A.; Eickhoff, S. B.; Yeo, B. T. T.

10.1101/135632 — neuroscience — Posted on 2017-07-16

775 A CRISPR-Based Yeast Two-Hybrid System For Investigating RNA-Protein Interactions

Hass, E. P.; Zappulla, D. C.

10.1101/139600 — molecular biology — Posted on 2017-07-16

776 Hemagglutinin Glycan Clock Guides Human Influenza A Virus Evolution

Altman, M. O.; Angel, M.; Kosik, I.; Gibbs, J. S.; Trovao, N. S.; Nelson, M. I.; Yewdell, J. W.

10.1101/163345 — microbiology — Posted on 2017-07-16

777 Host population structure and treatment frequency maintain balancing selection on drug resistance

Cobey, S.; Baskerville, E. B.; Colijn, C.; Hanage, W.; Fraser, C.; Lipsitch, M.

10.1101/128967 — evolutionary biology — Posted on 2017-07-16

778 Characteristics of functional enrichment and gene expression level of human putative transcriptional target genes

Osato, N.

10.1101/085654 — bioinformatics — Posted on 2017-07-16

779 A novel Word2vec based tool to estimate semantic similarity of genes by using Gene Ontology terms

Duong, D.; Eskin, E.; Li, J.

10.1101/103648 — bioinformatics — Posted on 2017-07-16

780 Prognostic biomarkers in oral squamous cell carcinoma: a systematic review

Rivera, C.; de Oliveira, A. K.; Pereira e Costa, R. A.; De Rossi, T.; Paes Leme, A. F.

10.1101/164111 — pathology — Posted on 2017-07-16

781 Histopathological Effects of Therapeutic Doses of Combined XO-Inhibitors and ACE-Inhibitors on the Expression of VEGF-A in the Myocardium and Renal Cortex in Chronic Hypertensive Albino Rats

Rezk, H. M.; Ibraheim, A.

10.1101/163824 — pathology — Posted on 2017-07-15

782 Using Arterial Spin Labelling to Investigate Spontaneous and Evoked Ongoing Musculoskeletal Pain

Wartolowska, K. A.; Bulte, D. P.; Chappell, M. A.; Jenkinson, M.; Okell, T. W.; Webster, M.; Carr, A. J.

10.1101/163196 — neuroscience — Posted on 2017-07-15

783 Resting-state connectivity and its association with cognitive performance, educational attainment, and household income in UK Biobank (N = 3,950)

Shen, X.; Cox, S. R.; Adams, M. J.; Howard, D. M.; Lawrie, S. M.; Ritchie, S. J.; Bastin, M. E.; Deary, I. J.; McIntosh, A. M.; Whalley, H. C.

10.1101/164053 — neuroscience — Posted on 2017-07-15

784 Repeated translocation of a gene cassette drives sex chromosome turnover in strawberries

Tennessen, J. A.; Wei, N.; Straub, S.; Govindarajulu, R.; Liston, A.; Ashman, T.-L.

10.1101/163808 — evolutionary biology — Posted on 2017-07-15

785 Selection and neutral mutations drive pervasive mutability losses in long-lived B cell lineages

Costa Vieira, M.; Zinder, D.; Cobey, S.

10.1101/163741 — evolutionary biology — Posted on 2017-07-15

786 Seeing spots: Measuring, quantifying heritability, and assessing fitness consequences of coat pattern traits in a wild population of giraffes (Giraffa camelopardalis)

Lee, D. E.; Cavener, D. R.; Bond, M. L.

10.1101/161281 — evolutionary biology — Posted on 2017-07-15

787 Paleophenotype Reconstruction Of Carbon Fixation Proteins As A Window Into Historic Biological States

Kacar, B.; Guy, L.; Smith, E.; Baross, J. A.

10.1101/164038 — evolutionary biology — Posted on 2017-07-15

788 β-catenin has both conserved and novel functions in the sponge Ephydatia muelleri

Schippers, K. J.; Nichols, S. A.

10.1101/164012 — evolutionary biology — Posted on 2017-07-15

789 The prevalence and impact of transient species in ecological communities

Snell, S.; Evans, B.; White, E.; Hurlbert, A.

10.1101/163816 — ecology — Posted on 2017-07-15

790 Repeated regime shifts in a desert rodent community

Christensen, E.; Harris, D.; Ernest, M.

10.1101/163931 — ecology — Posted on 2017-07-15

791 Ecological selection of siderophore-producing microbial taxa in response to heavy metal contamination

Hesse, E.; O'Brien, S.; Tromas, N.; Bayer, F.; Lujan, A.; van Veen, E.; Hodgson, D.; Buckling, A.

10.1101/163774 — ecology — Posted on 2017-07-15

792 Disequilibrium of fire-prone forests sets the stage for a rapid decline in conifer dominance during the 21st century

Serra-Diaz, J. M.; Maxwell, C.; Lucash, M. S.; Scheller, R.; Laflower, D. M.; Miller, A.; Tepley, A.; Epstein, H.; Anderson-Teixeira, K.; Thompson, J. R.

10.1101/163899 — ecology — Posted on 2017-07-15

793 Quantius: Generic, high-fidelity human annotation of scientific images at 105-clicks-per-hour

Hughes, A.; Mornin, J. D.; Biswas, S. K.; Bauer, D. P.; Bianco, S.; Gartner, Z. J.

10.1101/164087 — bioinformatics — Posted on 2017-07-15

794 Tissue Folding by Mechanical Compaction of the Mesenchyme

Hughes, A. J.; Miyazaki, H.; Coyle, M. C.; Zhang, J.; Laurie, M. T.; Chu, D.; Vavrusova, Z.; Schneider, R. A.; Klein, O. D.; Gartner, Z. J.

10.1101/164020 — bioengineering — Posted on 2017-07-15

795 IW-Scoring: an Integrative Weighted Scoring framework for annotating and prioritizing genetic variations in the noncoding genome

Wang, J.; Ullah, D.; Chelala, C.

10.1101/163311 — bioinformatics — Posted on 2017-07-15

796 Physical activity unveils the relationship between mitochondrial energetics, muscle quality and physical function in older adults

Distefano, G.; Standley, R. A.; Zhang, X.; Carnero, E. A.; Yi, F.; Cornnell, H. H.; Coen, P. M.

10.1101/164160 — physiology — Posted on 2017-07-15

797 Characterization of a set of abdominal neuroendocrine cells that regulate stress physiology using colocalized diuretic peptides in Drosophila

Zandawala, M.; Marley, R.; Davies, S. A.; Nassel, D. R.

10.1101/164178 — neuroscience — Posted on 2017-07-15

798 Fast and accurate edge orientation processing during object manipulation

Pruszynski, J. A.; Flanagan, J. R.; Johansson, R. S.

10.1101/163790 — neuroscience — Posted on 2017-07-15

799 Cytosolic proteins can exploit membrane localization to trigger functional assembly

Yogurtcu, O. N.; Johnson, M. E.

10.1101/164152 — biophysics — Posted on 2017-07-15

800 Dependence of Intravoxel Incoherent Motion MR threshold b-value selection for separating perfusion and diffusion compartment and liver fibrosis diagnostic performance.

Li, Y.; Lu, P.-X.; Huang, H.; Leung, J.; Chen, W.; Wang, Y.-X.

10.1101/164129 — biophysics — Posted on 2017-07-15

801 Multiplexed and multivariate representations of sound identity during perceptual constancy

Town, S.; Wood, K. C.; Bizley, J. K.

10.1101/102889 — neuroscience — Posted on 2017-07-15

802 Environmental DNA metabarcoding of rivers: Not all eDNA is everywhere, and not all the time

Macher, J.-N.; Leese, F.

10.1101/164046 — molecular biology — Posted on 2017-07-15

803 A phylogenetic and evolutionary analysis of antimycin biosynthesis

Joynt, R.; Seipke, R. F.

10.1101/164145 — microbiology — Posted on 2017-07-15

804 Interplay between antibiotic efficacy and drug-induced lysis underlies enhanced biofilm formation at subinhibitory drug concentrations

Yu, W.; Hallinen, K.; Wood, K.

10.1101/163733 — microbiology — Posted on 2017-07-15

805 A mathematical model relates intracellular TLR4 oscillations to sepsis progression

Stan, R.; Soriano, F.; Camargo, M. M.

10.1101/164137 — immunology — Posted on 2017-07-15

806 The diversity, structure and function of heritable adaptive immunity sequences in the Aedes aegypti genome

Whitfield, Z.; Dolan, P. T.; Kunitomi, M.; Tassetto, M.; Seetin, M. G.; Oh, S.; Heiner, C.; Paxinos, E.; Andino, R.

10.1101/127498 — genomics — Posted on 2017-07-15

807 A Resource For The Allele-Specific Analysis Of DNA Methylation At Multiple Genomically Imprinted Loci In Mice

Wasson, J. A.; Birol, O.; Katz, D.

10.1101/163832 — genetics — Posted on 2017-07-15

808 Genetic costs of domestication and improvement

Moyers, B. T.; Morrell, P. L.; McKay, J. K.

10.1101/122093 — evolutionary biology — Posted on 2017-07-15

809 MRIQC: Advancing the Automatic Prediction of Image Quality in MRI from Unseen Sites

Esteban, O.; Birman, D.; Schaer, M.; Koyejo, O. O.; Poldrack, R. A.; Gorgolewski, K. J.

10.1101/111294 — bioinformatics — Posted on 2017-07-15

810 Three-dimensional single cell patterning for mid- to high-throughput studies of tumor cell and extracellular matrix heterogeneity

Gong, X.; Mills, K. L.

10.1101/163881 — bioengineering — Posted on 2017-07-15

811 Dark period transcriptomic and metabolic profiling of two diverse Eutrema salsugineum accessions

Yin, J.; Gosney, M. J.; Dilkes, B.; Mickelbart, M.

10.1101/163980 — plant biology — Posted on 2017-07-15

812 Exploration of Western Himalayan region for identification of gold nanoparticles synthesizing bacteria

Thakur, R. K.; Shirkot, P.

10.1101/164103 — microbiology — Posted on 2017-07-15

813 Interferon Regulatory Factor 5 (IRF5) Interacts with the Translation Initiation Complex and Promotes mRNA Translation During the Integrated Stress Response to Amino Acid Deprivation

Warner, J. D.; Wiley, M.; Wu, Y.-Y.; Wen, F.; Kinter, M.; Yanagiya, A.; Tessneer, K. L.; Gaffney, P. M.

10.1101/163998 — biochemistry — Posted on 2017-07-15

814 Cell Type Specific Survey of Epigenetic Modifications by Tandem Chromatin Immunoprecipitation Sequencing

Mito, M.; Kadota, M.; Tanaka, K.; Furuta, Y.; Abe, K.; Iwasaki, S.; Nakagawa, S.

10.1101/163568 — molecular biology — Posted on 2017-07-14

815 Interplay between antibiotic efficacy and drug-induced lysis underlie enhanced biofilm formation at subinhibitory drug concentrations

Yu, W.; Hallinen, K.; Wood, K.

10.1101/163733 — microbiology — Posted on 2017-07-14

816 Orb-web spider color polymorphism through the eyes of multiple prey and predators

Goncalves, N. X.; Gawryszewski, F. M.

10.1101/160341 — animal behavior and cognition — Posted on 2017-07-14

817 Temperature and Light Effects on Germination of Peronospora effusa Sporangia

Choudhury, R. A.; McRoberts, N.

10.1101/163923 — plant biology — Posted on 2017-07-14

818 Synthetic analysis of natural variants yields insights into the evolution and function of auxin signaling F-box proteins in Arabidopsis thaliana

Wright, R. C.; Zahler, M. L.; Gerben, S. R.; Nemhauser, J. L.

10.1101/115667 — plant biology — Posted on 2017-07-14

819 ScreenCube: A 3D Printed System For Rapid and Cost-Effective Chemical Screening in Adult Zebrafish

Monstad-Rios, A. T.; Watson, C. J.; Kwon, R. Y.

10.1101/163469 — pharmacology and toxicology — Posted on 2017-07-14

820 Age and sex modulate the variability of neural responses to naturalistic videos

Petroni, A.; Cohen, S. S.; Ai, L.; Langer, N.; Henin, S.; Vanderwal, T.; Milham, M. P.; Parra, L. C.

10.1101/089060 — neuroscience — Posted on 2017-07-14

821 A random-matrix theory of the number sense

Hannagan, T.; Nieder, A.; Viswanathan, P.; Dehaene, S.

10.1101/160895 — neuroscience — Posted on 2017-07-14

822 Genomic architecture of codfishes featured by expansions of innate immune genes and short tandem repeats

Torresen, O. K.; Brieuc, M. S. O.; Solbakken, M. H.; Sorhus, E.; Nederbragt, A. J.; Jakobsen, K. S.; Meier, S.; Edvardsen, R. B.; Jentoft, S.

10.1101/163949 — genomics — Posted on 2017-07-14

823 Single-cell replication profiling reveals stochastic regulation of the mammalian replication-timing program.

Dileep, V.; Gilbert, D. M.

10.1101/158352 — genomics — Posted on 2017-07-14

824 Light and growth form interact to shape stomatal ratio among British angiosperms

Muir, C. D.

10.1101/163873 — evolutionary biology — Posted on 2017-07-14

825 Multi-scale immune selection and the transmission-diversity feedback of Plasmodium falciparum malaria

Holding, T.; Valletta, J. J.; Recker, M.

10.1101/163584 — epidemiology — Posted on 2017-07-14

826 Online resources for PCAWG data exploration, visualization, and discovery

Goldman, M; Zhang, J; Fonseca, N; Xiang, Q; Craft, B; Piñeiro-Yáñez, E; O'Connor, B; Bazant, W; Barrera, E; Muñoz, A; Petryszak, R; Füllgrabe, A; Al-Shahrour, F; Keays, M; Haussler, D; Weinstein, J; Huber, W; Valencia, A; Papatheodorou, I; Zhu, J; Ferreti, V; Vazquez, M

10.1101/163907 — bioinformatics — Posted on 2017-07-14

827 Comparing Caenorhabditis elegans gentle and harsh touch response behavior using a multiplexed hydraulic microfluidic device

McClanahan, P.; Xu, J.; Fang-Yen, C.

10.1101/162990 — bioengineering — Posted on 2017-07-14

828 Platform for Closed Loop Neuromodulation Based on Dual Mode Biosignals

Mirza, K. B.; Kulasekeram, N.; Cork, S. C.; Bloom, S.; Nikolic, K.; Toumazou, C.

10.1101/163329 — bioengineering — Posted on 2017-07-14

829 Advanced processing and analysis of conventional confocal microscopy generated scanning FCS data

Waithe, D.; Schneider, F.; Chojnacki, J.; Shrestha, D.; Bernardino de la Serna, J.; Eggeling, C.

10.1101/163766 — biophysics — Posted on 2017-07-14

830 InDel assembly: A novel framework for engineering protein loops through length and compositional variation

Tizei, P. A. G.; Harris, E.; Renders, M.; Pinheiro, V. B.

10.1101/127829 — bioengineering — Posted on 2017-07-14

831 Characterising maize viruses associated with maize lethal necrosis symptoms in sub Saharan Africa

Adams, I.; Braidwood, L.; Stomeo, F.; Phiri, N.; Uwumukiza, B.; Feyissa, B.; Mahuku, G.; Wangai, A.; Smith, J.; Mumford, R.; Boonham, N.

10.1101/161489 — microbiology — Posted on 2017-07-14

832 Evidence for functional and non-functional classes of peptides translated from long non-coding RNAs

Ruiz-Orera, J.; Verdaguer-Grau, P.; Villanueva-Canas, J. L.; Messeguer, X.; Alba, M. M.

10.1101/064915 — evolutionary biology — Posted on 2017-07-14

833 Habitat preference of an herbivore shapes the habitat distribution of its host plant

Alexandre, N. M.; Humphrey, P. T.; Frazier, J.; Gloss, A. D.; Lee, J.; Affeldt, H. A.; Whiteman, N. K.

10.1101/156240 — ecology — Posted on 2017-07-14

834 riboSeed: leveraging prokaryotic genomic architecture to assemble across ribosomal regions

Waters, N. R.; Abram, F.; Brennan, F.; Holmes, A.; Pritchard, L.

10.1101/159798 — bioinformatics — Posted on 2017-07-14

835 Bifurcation analysis of metabolic pathways: an illustration from yeast glycolysis

Overal, G.; Teusink, B.; Bruggeman, F. J.; Hulshof, J.; Planque, R.

10.1101/163600 — systems biology — Posted on 2017-07-14

836 Inert and seed-competent tau monomers elucidate the structural origins of aggregation

Mirbaha, H.; Morozova, O. A.; Ruff, K. M.; Sharma, A.; Pappu, R. V.; Colby, D. W.; Mirzaei, H.; Joachimiak, L. A.; Diamond, M. I.

10.1101/163394 — neuroscience — Posted on 2017-07-14

837 Connectome-harmonic decomposition of human brain activity reveals dynamical repertoire re-organisation under LSD

Atasoy, S.; Roseman, L.; Kaelen, M.; Kringelbach, M. L.; Deco, G.; Carhart-Harris, R.

10.1101/163667 — neuroscience — Posted on 2017-07-14

838 Noise Gated by Dendrosomatic Interactions Increases Information Transmission

Naud, R.; Payeur, A.; Longtin, A.

10.1101/163261 — neuroscience — Posted on 2017-07-14

839 A naturalistic assay for measuring behavioral responses to aversive stimuli at millisecond timescale

Schoonover, C. E.; Fink, A. J. P.; Axel, R.

10.1101/161885 — neuroscience — Posted on 2017-07-14

840 Reconfiguration of brain network architectures between resting state and complexity-dependent cognitive reasoning

Hearne, L. J.; Cocchi, L.; Zalesky, A.; Mattingley, J. B.

10.1101/163022 — neuroscience — Posted on 2017-07-14

841 Disentangling metabolic functions of bacteria in the honey bee gut

Kesnerova, L.; Mars, R. A. T.; Ellegaard, K. M.; Troilo, M.; Sauer, U.; Engel, P.

10.1101/157461 — microbiology — Posted on 2017-07-14

842 Genome-wide identification and analysis of transcribed enhancers during macrophage polarization

Denisenko, E.; Guler, R.; Mhlanga, M.; Suzuki, H.; Brombacher, F.; Schmeier, S.

10.1101/163519 — bioinformatics — Posted on 2017-07-14

843 confFuse: high-confidence fusion gene detection across tumor entities

Huang, Z.; Jones, D. T. W.; Wu, Y.; Lichter, P.; Zapatka, M.

10.1101/163675 — bioinformatics — Posted on 2017-07-14

844 Subgenual anterior cingulate cortex controls sadness-induced modulations of cognitive and emotional network hubs

Ramirez-Mahaluf, J. P.; Perramon, J.; Otal, B.; Villoslada, P.; Compte, A.

10.1101/163709 — neuroscience — Posted on 2017-07-14

845 Duplex Proximity Sequencing (Pro-Seq): A method to improve DNA sequencing accuracy without the cost of molecular barcoding redundancy

Pel, J.; Choi, W. W. Y.; Leung, A. O.; Shibahara, G.; Gelinas, L.; Despotovic, M.; Ung, W. L.; Marziali, A.

10.1101/163444 — genomics — Posted on 2017-07-14

846 A mutation in the LMOD1 actin-binding domain segregating with disease in a large British family with thoracic aortic aneurysms and dissections

Wan, Y. B. A.; Simpson, M. A.; Aragon-Martin, J. A.; Osborn, D. P. S.; Regalado, E. S.; Guo, D.; Boileau, C.; Jondeau, G.; Benarroch, L.; Isekame, Y.; Bharj, J.; Sneddon, J.; Fisher, E. M.; Dean, J.; Tome Esteban, M. T.; Saggar, A.; Milewicz, D.; Jahangiri, M.; Behr, E. R.; Smith, A.; Child, A. H.

10.1101/153452 — genetics — Posted on 2017-07-14

847 HAM-TBS: High accuracy methylation measurements via targeted bisulfite sequencing

Roeh, S.; Provencal, N.; Wiechmann, T.; Koedel, M.; Sauer, S.; Binder, E. B.

10.1101/163535 — genetics — Posted on 2017-07-14

848 Mechanism of genome interrogation: How CRISPR RNA-guided Cas9 proteins locate specific targets on DNA

Shvets, A.; Kolomeisky, A.

10.1101/163501 — biophysics — Posted on 2017-07-14

849 Intragenic differential expression in archaea transcriptomes revealed by computational analysis of tiling microarrays

Khan, A.; Z. N. Vencio, R.

10.1101/163436 — bioinformatics — Posted on 2017-07-14

850 Picky: a simple method designer for targeted proteomics

Zauber, H.; Selbach, M.

10.1101/163154 — biochemistry — Posted on 2017-07-14

851 Heterozygous RFX6 protein truncating variants cause Maturity-Onset Diabetes of the Young (MODY) with reduced penetrance

Patel, K. A.; Kettunen, J.; Laakso, M.; Stancakova, A.; Laver, T. W.; Colclough, K.; Johnson, M. B.; Abramowicz, M.; Groop, L.; Miettinen, P. J.; Shepherd, M. H.; Flanagan, S. E.; Ellard, S.; Inagaki, N.; Hattersley, A. T.; Tuomi, T.; Cnop, M.; Weedon, M. N.

10.1101/101881 — genetics — Posted on 2017-07-14

852 Targeted re-sequencing of coding DNA sequences for SNP discovery in non-model species

Foerster, D.; Bull, J. K.; Lenz, D.; Autenrieth, M.; Paijmans, J. L. A.; Kraus, R. H. S.; Nowak, C.; Bayerl, H.; Kuehn, R.; Saveljev, A. P.; Sindicic, M.; Hofreiter, M.; Schmidt, K.; Fickel, J.

10.1101/163659 — genetics — Posted on 2017-07-14

853 HtrA1 activation is driven by an allosteric mechanism of inter-monomer communication

Cortes Cabrera, A.; Melo, E.; Roth, D.; Topp, A.; Delobel, F.; Stucki, C.; Chen, C.-y.; Jakob, P.; Banfai, B.; Dunkley, T.; Schilling, O.; Huber, S.; Iacone, R.; Petrone, P.

10.1101/163717 — biophysics — Posted on 2017-07-14

854 C-State: An interactive web app for simultaneous multi-gene visualization and comparative epigenetic pattern search

Sowpati, D. T.; Srivastava, S.; Dhawan, J.; Mishra, R. K.

10.1101/163634 — bioinformatics — Posted on 2017-07-14

855 Multiplexed Gene Synthesis in Emulsions for Exploring Protein Functional Landscapes

Plesa, C.; Sidore, A. M.; Lubock, N.; Zhang, D.; Kosuri, S.

10.1101/163550 — biochemistry — Posted on 2017-07-14

856 Rice TSV3 Encoding Obg-like GTPase Protein is Essential for Chloroplast Development during the Early Leaf Stage under Cold Stress

Lin, D.; Jiang, Q.; Ma, X.; Zheng, K.; Gong, X.; Teng, S.; Xu, J.; Dong, Y.

10.1101/163576 — plant biology — Posted on 2017-07-14

857 Specification of the germline by Nanos-dependent down-regulation of the somatic synMuvB transcription factor LIN-15B

Lee, C.-Y. S.; Lu, T.; Seydoux, G.

10.1101/163642 — cell biology — Posted on 2017-07-14

858 Low-cost HPV testing and the prevalence of cervical infection in asymptomatic populations in Guatemala

Lou, H.; Gharzouzi, E.; Guerra, S. P.; Domgue, J. F.; Sawitzke, J.; Villagran, G.; Garland, L.; Boland, J.; Wagner, S.; Martinez, J.; Rosas, H.; Troxler, J.; McMillen, H.; Kessing, B.; Alvirez, E.; Castillo, M.; Morales, H.; Argueta, V.; Rosingh, A.; van Aerde-van Nunen, F. J. H. B.; Lopez, G.; Pinedo, H. M.; Schiffman, M.; Dean, M.; Orozco, R.

10.1101/134775 — molecular biology — Posted on 2017-07-13

859 In vitro evaluation of antagonism by Trichoderma spp. towards Phellinus noxius associated with rain tree (Samanea saman) and Senegal mahogany (Khaya senegalensis) in Singapore

Burcham, D. C.; Wong, J. Y.; Abarrientos, N. V.; Mohamed Ali, M. I.; Fong, Y. K.; Schwarze, F. W. M. R.

10.1101/151753 — ecology — Posted on 2017-07-13

860 Widespread dysregulation of the circadian clock in human cancer

Shilts, J.; Chen, G.; Hughey, J.

10.1101/130765 — cancer biology — Posted on 2017-07-13

861 Repliscan: a tool for classifying replication timing regions

Zynda, G. J.; Song, J.; Concia, L.; Wear, E. E.; Hanley-Bowdoin, L.; Thompson, W. F.; Vaughn, M. W.

10.1101/094177 — bioinformatics — Posted on 2017-07-13

862 CellNetVis: a web tool for visualization of biological networks using force-directed layout constrained by cellular components

Heberle, H.; Falsarella Carazzolle, M.; Telles, G. P.; Vaz Meirelles, G.; Minghim, R.

10.1101/163410 — systems biology — Posted on 2017-07-13

863 DUSP1 promotes apoptosis and suppresses cell migration, while leaving the JIP1-protected cytokine production intact, during paramyxovirus infection.

Robitaille, A. C.; Caron, E.; Zucchini, N.; Mukawera, E.; Adam, D.; Mariani, M. K.; Gelinas, A.; Fortin, A.; Brochiero, E.; Grandvaux, N.

10.1101/163360 — microbiology — Posted on 2017-07-13

864 Heterogeneous Responses of Hematopoietic Stem Cells to Inflammatory Stimuli are Altered with Age

Mann, M.; Mehta, A.; de Boer, C.; Kowalczyk, M. S.; Lee, K.; Farouq, D.; Regev, A.; Baltimore, D.

10.1101/163402 — immunology — Posted on 2017-07-13

865 Forward Genetic ENU Mutagenesis Screen for Mouse Models of Chronic Fatigue Identifies a Novel Mutation in Slc2a4 (GLUT4)

de Groot, M. H. M.; Castorena, C. M.; Kumar, V.; Mohawk, J. A.; Ahmed, N. I.; Takahashi, J. S.

10.1101/163378 — genetics — Posted on 2017-07-13

866 Networks of VTA neurons encode real-time information about uncertain numbers of actions executed to earn a reward

Wood, J.; Simon, N. W.; Koerner, S.; Kass, R. E.; Moghaddam, B.

10.1101/084970 — neuroscience — Posted on 2017-07-13

867 Audio-visual synchrony and spatial attention enhance processing of dynamic visual stimulation independently and in parallel: a frequency-tagging study

Covic, A.; Keitel, C.; Porcu, E.; Schröger, E.; Müller, M. M.

10.1101/128918 — neuroscience — Posted on 2017-07-13

868 Hemagglutinin Glycan Clock Guides Human Influenza A Virus Evolution

Altman, M. O.; Angel, M.; Kosik, I.; Gibbs, J. S.; Trovao, N. S.; Nelson, M. I.; Yewdell, J. W.

10.1101/163345 — microbiology — Posted on 2017-07-13

869 The Multiple Sclerosis Genomic Map: Role of peripheral immune cells and resident microglia in susceptibility

- International Multiple Sclerosis Genetics Consorti, ; Patsopoulos, N.; Baranzini, S. E.; Santaniello, A.; Shoostari, P.; Cotsapas, C.; Wong, G.; Beecham, A. H.; James, T.; Replogle, J.; Vlachos, I.; McCabe, C.; Pers, T.; Brandes, A.; White, C.; Keenan, B.; Cimpean, M.; Winn, P.; Panteliadis, I.-P.; Robbins, A.; Andlauer, T. F. M.; Zarzycki, O.; Dubois, B.; Goris, A.; Bach Sondergaard, H.; Sellebjerg, F.; Soelberg Sorensen, P.; Ullum, H.; Wegner Thoerner, L.; Saarela, J.; Cournu-Rebeix, I.; Damotte, V.; Fontaine, B.; Guillot-Noel, L.; Lathrop, M.; Vukusik, S.; Berthele, A.; Biberacher, V.; B

10.1101/143933 — genetics — Posted on 2017-07-13

870 Parallel Altitudinal Clines Reveal Adaptive Evolution Of Genome Size In Zea mays

Bilinski, P.; Albert, P. S.; Berg, J. J.; Birchler, J.; Grote, M.; Lorant, A.; Quezada, J.; Swarts, K.; Yang, J.; Ross-Ibarra, J.

10.1101/134528 — evolutionary biology — Posted on 2017-07-13

871 Membrane bending begins at any stage of clathrin-coat assembly and defines endocytic dynamics

Scott, B. L.; Sochacki, K. A.; Low-Nam, S. T.; Bailey, E. M.; Luu, Q.; Hor, A.; Dickey, A. M.; Smith, S.; Kerkvliet, J. G.; Taraska, J. W.; Hoppe, A. D.

10.1101/163303 — cell biology — Posted on 2017-07-13

872 Immature HIV-1 Lattice Assembly Dynamics are Regulated by Scaffolding from Nucleic Acid and the Plasma Membrane

Pak, A. J.; Grime, J. M. A.; Sengupta, P.; Chen, A. K.; Durumeric, A. E. P.; Srivastava, A.; Yeager, M.; Briggs, J. A. G.; Lippincott-Schwartz, J.; Voth, G. A.

10.1101/163295 — biophysics — Posted on 2017-07-13

873 Incomplete inhibition of HIV infection results in more HIV infected lymph node cells by reducing cell death

Jackson, L.; Hunter, J.; Cele, S.; Ferreira, I. M.; Young, A.; Karim, F.; Madansein, R.; Dullabh, K. J.; Chen, C.-Y.; Buckels, N. J.; Ganga, Y.; Khan, K.; Boulle, M.; Lustig, G.; Neher, R. A.; Sigal, A.

10.1101/163352 — bioinformatics — Posted on 2017-07-13

874 Proposal for minimum information guidelines to report and reproduce results of particle tracking and motion analysis

Rigano, A.; Strambio De Castillia, C.

10.1101/155036 — bioinformatics — Posted on 2017-07-13

875 Mixtures are more salient stimuli in olfaction

Chan, H. K.; Nowotny, T.

10.1101/163238 — neuroscience — Posted on 2017-07-13

876 The Reconstruction of 2,631 Draft Metagenome-Assembled Genomes from the Global Oceans

Tully, B. J.; Graham, E. D.; Heidelberg, J. F.

10.1101/162503 — microbiology — Posted on 2017-07-13

877 Functionally Convergent B Cell Receptor Sequences in Transgenic Rats Expressing a Human B Cell Repertoire in Response to Tetanus Toxoid and Measles Antigens

Buerckert, J.-P.; Dubois, A. R. S. X.; Faison, W. J.; Farinelle, S.; Charpentier, E.; Sinner, R.; Wienecke-Baldacchino, A.; Muller, C. P.

10.1101/159368 — immunology — Posted on 2017-07-13

878 Exon-based phylogenomics strengthens the phylogeny of Neotropical cichlids and identifies remaining conflicting clades (Cichliformes: Cichlidae: Cichlinae)

Ilves, K. L.; Torti, D.; Lopez-Fernandez, H.

10.1101/133512 — evolutionary biology — Posted on 2017-07-13

879 Cadmium Disrupts Vestibular Function by Interfering with Otolith Formation

Green, A. J.; Mattingly, C. J.; Planchart, A.

10.1101/162347 — developmental biology — Posted on 2017-07-13

880 The Reproducibility Of Research And The Misinterpretation Of P Values

Colquhoun, D.

10.1101/144337 — scientific communication and education — Posted on 2017-07-13

881 Mice use robust and common strategies to discriminate natural scenes

Yu, Y.; Hira, R.; Stirman, J. N.; Yu, W.; Smith, I. T.; Smith, S. L.

10.1101/156653 — neuroscience — Posted on 2017-07-13

882 Capture and Purification of Plant Genomic DNA on a Readily-available Cellulose Matrix

Thompson, M.; Hrabak, E.

10.1101/163212 — molecular biology — Posted on 2017-07-13

883 Assembly of hundreds of microbial genomes from the cow rumen reveals novel microbial species encoding enzymes with roles in carbohydrate metabolism

Stewart, R.; Auffret, M.; Warr, A.; Snelling, T.; Dewhurst, R.; Walker, A.; Roehe, R.; Watson, M.

10.1101/162578 — genomics — Posted on 2017-07-13

884 The Detection of Phase Amplitude Coupling During Sensory Processing

Seymour, R. A.; Rippon, G.; Kessler, K.

10.1101/163006 — neuroscience — Posted on 2017-07-13

885 Homeostatic normalization of sensory gain in auditory corticofugal feedback neurons

Asokan, M.; Williamson, R. S.; Hancock, K. E.; Polley, D. B.

10.1101/162909 — neuroscience — Posted on 2017-07-13

886 A mental number line in human newborns

Rugani, R.; Lunghi, M.; Di Giorgio, E.; Regolin, L.; Dalla Barba, B.; Vallortigara, G.; Simion, F.

10.1101/159335 — neuroscience — Posted on 2017-07-13

887 A Radically New Theory of how the Brain Represents and Computes with Probabilities

Rinkus, R.

10.1101/162941 — neuroscience — Posted on 2017-07-13

888 Network Curvature as a Hallmark of Brain Structural Connectivity

Farooq, H.; Chen, Y.; Georgiou, T. T.; Tannenbaum, A. R.; Lenglet, C.

10.1101/162875 — neuroscience — Posted on 2017-07-13

889 Anterolateral entorhinal-hippocampal imbalance in older adults disrupts object pattern separation

Reagh, Z. M.; Noche, J. A.; Tustison, N.; Delisle, D.; Murray, E. A.; Yassa, M. A.

10.1101/162925 — neuroscience — Posted on 2017-07-13

890 Qinichelins, novel catecholate-hydroxamate siderophores synthesized via a multiplexed convergent biosynthesis pathway

Gubbens, J.; Wu, C.; Zhu, H.; Filippov, D. V.; Florea, B. I.; Rigali, S.; Overkleeft, H. S.; van Wezel, G. P.

10.1101/163170 — microbiology — Posted on 2017-07-13

891 Resequencing the Escherichia coli genome by GenoCare single molecule sequencing platform

Zhao, L.; Deng, L.; Li, G.; Jin, H.; Cai, J.; Shang, H.; Li, Y.; Yang, A. X.; Chen, F.; Zhao, Z.; Xu, G.; Liu, W.; Liu, S.; Xiang, G.; Liu, B.; Xu, W.; Zeng, L.; Zhang, R.; Zhao, H.; Wu, P.; Zhou, Z.; Zheng, J.; Ezanno, P.; Chen, W.; Yan, Q.; Deem, M.; Yu, J.; He, J.

10.1101/163089 — genomics — Posted on 2017-07-13

892 A comprehensive map of genetic variation in the world’s largest ethnic group - Han Chinese

Chiang, C. W. K.; Mangul, S.; Robles, C. R.; Kretzschmar, W. W.; Cai, N.; Kendler, K. S.; Sankararam, S.; Flint, J.

10.1101/162982 — genetics — Posted on 2017-07-13

893 The amount of nitrogen used for photosynthesis governs molecular evolution in plants

Kelly, S.

10.1101/162693 — evolutionary biology — Posted on 2017-07-13

894 The path to re-evolve cooperation is constrained in Pseudomonas aeruginosa

Granato, E. T.; Kümmerli, R.

10.1101/163048 — evolutionary biology — Posted on 2017-07-13

895 Phylogenomics of the olive tree (Olea europaea) disentangles ancient allo- and autopolyploidizations in Lamiales.

Julca, I.; Marcet-Houben, M.; Vargas, P.; Gabaldon, T.

10.1101/163063 — evolutionary biology — Posted on 2017-07-13

896 Environmental engineering is an emergent feature of diverse ecosystems and drives community structure

Advani, M.; Bunin, G.; Mehta, P.

10.1101/162966 — ecology — Posted on 2017-07-13

897 An exact transformation of convolutional kernels applied directly to DNA/RNA sequences

Ding, Y.; Li, J.; Wang, M.; Gao, G.

10.1101/163220 — bioinformatics — Posted on 2017-07-13

898 HECIL: A Hybrid Error Correction Algorithm for Long Reads with Iterative Learning

Choudhury, O.; Chakrabarty, A.; Emrich, S.

10.1101/162917 — bioinformatics — Posted on 2017-07-13

899 TriPoly: a haplotype estimation approach for polyploids using sequencing data of related individuals

Motazedi, E.; de Ridder, D.; Finkers, R.; Maliepaard, C.

10.1101/163162 — bioinformatics — Posted on 2017-07-13

900 Principal Metabolic Flux Mode Analysis

Bhadra, S.; Blomberg, P.; Castillo, S.; Rousu, J.

10.1101/163055 — bioinformatics — Posted on 2017-07-13

901 The WYL domain of the Thermotoga elfii PIF1 helicase is an accessory single-stranded DNA binding module

Andis, N. M.; Sausen, C. W.; Alladin, A.; Bochman, M.

10.1101/163188 — biochemistry — Posted on 2017-07-13

902 Wide sampling of natural diversity identifies novel molecular signatures of C4 photosynthesis

Kelly, S.; Covshoff, S.; Wanchana, S.; Thakur, V.; Quick, P.; Wang, Y.; Ludwig, M.; Bruskiewich, R.; Fernie, A.; Sage, R.; Tian, Z.; Yan, Z.; Wang, J.; Zhang, Y.; Zhu, X.-G.; Ka-Shu Wong, G.; Hibberd, J.

10.1101/163097 — plant biology — Posted on 2017-07-13

903 The Evolution of Fair Offers with Low Rejection Thresholds in the Ultimatum Game

Schank, J. C.; Miller, M. L.; Smaldino, P. E.

10.1101/162313 — evolutionary biology — Posted on 2017-07-13

904 DNA 5-Hydroxymethylcytosines from Cell-free Circulating DNA as Diagnostic Biomarkers for Human Cancers

Li, W.; Zhang, X.; Lu, X.; You, L.; Song, Y.; Luo, Z.; Zhang, J.; Nie, J.; Zheng, W.; Xu, D.; Wang, Y.; Dong, Y.; Yu, S.; Hong, J.; Shi, J.; Hao, H.; Luo, F.; Hua, L.; Wang, P.; Qian, X.; Yuan, F.; Wei, L.; Cui, M.; Zhang, T.; Liao, Q.; Dai, M.; Liu, Z.; Chen, G.; Meckel, K.; Adhikari, S.; Jia, G.; Bissonnette, M. B.; Zhang, X.; Zhao, Y.; Zhang, W.; He, C.; Liu, J.

10.1101/163204 — cancer biology — Posted on 2017-07-13

905 Improving Gene Regulatory Network Inference by Incorporating Rates of Transcriptional Change

Desai, J.; Sartor, R. C.; Lawas, L. M.; Jagadish, K. S. V.; Doherty, C. J.

10.1101/093807 — bioinformatics — Posted on 2017-07-13

906 Self-organization mechanism of distinct microtubule orientations in axons and dendrites

Naoki, H.; Uegaki, K.; Ishii, S.

10.1101/163014 — neuroscience — Posted on 2017-07-13

907 Non-cell autonomous Otx2 homeoprotein regulates visual cortex plasticity through Gadd45b

Apulei, J.; Kim, N.; Testa, D.; Ribot, J.; Bernard, C.; Di Nardo, A. A.; Prochiantz, A.

10.1101/163071 — neuroscience — Posted on 2017-07-13

908 Thrombopoietin signaling to chromatin elicits rapid and pervasive epigenome remodeling within poised chromatin architectures

Comoglio, F.; Park, H. J.; Schoenfelder, S.; Barozzi, I.; Bode, D.; Fraser, P.; Green, A. R.

10.1101/163113 — genomics — Posted on 2017-07-13

909 A comprehensive characterization of cis-acting splicing-associated variants in human cancer

Shiraishi, Y.; Kataoka, K.; Chiba, K.; Okada, A.; Koure, Y.; Tanaka, H.; Ogawa, S.; Miyano, S.

10.1101/162560 — genomics — Posted on 2017-07-13

910 Key role of piRNAs in telomeric chromatin maintenance and telomere nuclear positioning in Drosophila germline

Radion, E.; Morgunova, V.; Ryazansky, S.; Akulenko, N.; Lavrov, S.; Abramov, Y.; Olovnikov, I.; Kalmykova, A.

10.1101/163030 — genomics — Posted on 2017-07-13

911 Soluble Syntaxin 3 Functions as a Transcription Regulator

Giovannone, A. J.; Winterstein, C.; Bhattaram, P.; Reales, E.; Low, S. H.; Baggs, J. E.; Xu, M.; Lalli, M. A.; Hogenesch, J. B.; Weimbs, T.

10.1101/162958 — cell biology — Posted on 2017-07-13

912 An Algorithm for Cellular Reprogramming

Ronquist, S.; Patterson, G.; Brown, M.; Lindsly, S.; Chen, H.; Muir, L.; Wicha, M.; Bloch, A.; Brockett, R.; Rajapakse, I.

10.1101/162974 — bioinformatics — Posted on 2017-07-13

913 Ancestral Reconstruction and C3 Bundle Sheath Transcript Abundance in the Paniceae Grasses Indicate the Foundations for all Three Biochemical C4 Sub-Types Were Likely Present in the Most Recent Ancestor

Washburn, J. D.; Kothapalli, S. S.; Brose, J. M.; Covshoff, S.; Hibberd, J. M.; Conant, G. C.; Pires, J. C.

10.1101/162644 — plant biology — Posted on 2017-07-13

914 Aether: Leveraging Linear Programming For Optimal Cloud Computing In Genomics

Luber, J. M.; Tierney, B. T.; Cofer, E. M.; Patel, C. J.; Kostic, A. D.

10.1101/162883 — bioinformatics — Posted on 2017-07-13

915 Consensus on Molecular Subtypes of Ovarian Cancer

Chen, G. M.; Kannan, L.; Geistlinger, L.; Kofia, V.; Safikhani, Z.; Gendoo, D. M. A.; Parmigiani, G.; Birrer, M.; Haibe-Kains, B.; Waldron, L.

10.1101/162685 — cancer biology — Posted on 2017-07-12

916 The rumen microbiome: an underexplored resource for novel antimicrobial discovery

Oyama, L. B.; Girdwood, S.; Cookson, A.; Fernandez-Fuentes, N.; Prive, F.; Vallin, H.; Wilkinson, T.; Golyshin, P.; Golyshina, O.; Mikut, R.; Hilpert, K.; Richards, J.; Wootton, M.; Edwards, J.; Maresca, M.; Perrier, J.; Lundy, F.; Luo, Y.; Zhou, M.; Hess, M.; Mantovani, H.; Creevey, C.; Huws, S. A.

10.1101/148221 — microbiology — Posted on 2017-07-12

917 Bayesian inference of agent-based models: a tool for studying kidney branching morphogenesis

Lambert, B.; MacLean, A. L.; Fletcher, A. G.; Combes, A. N.; Little, M. H.; Byrne, H. M.

10.1101/096032 — developmental biology — Posted on 2017-07-12

918 Why Does the Neocortex Have Layers and Columns, A Theory of Learning the 3D Structure of the World

Hawkins, J.; Ahmad, S.; Cui, Y.

10.1101/162263 — neuroscience — Posted on 2017-07-12

919 Sensory discrimination by isolated feeding tentacles in Sanderia malayensis

Mori, K.; Sullivan, M.; Ayers, J.

10.1101/162867 — neuroscience — Posted on 2017-07-12

920 Polioviruses that bind a chimeric Pvr-nectin-2 protein identify capsid residues involved in receptor interaction

Lin, Y.; Racaniello, V. R.

10.1101/162800 — microbiology — Posted on 2017-07-12

921 Toward Rapid Sequenced-Based Detection and Characterization of Causative Agents of Bacteremia

Hewitt, F. C.; Guertin, S. L.; Ternus, K. L.; Schulte, K.; Kadavy, D. R.

10.1101/162735 — genomics — Posted on 2017-07-12

922 Vaccination and the evolution of seasonal influenza

Wen, F. T.; Malani, A.; Cobey, S.

10.1101/162545 — evolutionary biology — Posted on 2017-07-12

923 Phylogenetic turnover during subtropical forest succession across environmental and phylogenetic scales

Purschke, O.; Michalski, S. G.; Bruelheide, H.; Durka, W.

10.1101/162727 — ecology — Posted on 2017-07-12

924 Pan-cancer analysis of whole genomes

Campbell, P. J.; Getz, G.; Stuart, J. M.; Korbel, J. O.; Stein, L. D.; - ICGC/TCGA Pan-Cancer Analysis of Whole Genomes Net,

10.1101/162784 — cancer biology — Posted on 2017-07-12

925 SQUID: Transcriptomic Structural Variation Detection from RNA-seq

Ma, C.; Shao, M.; Kingsford, C.

10.1101/162776 — bioinformatics — Posted on 2017-07-12

926 Sequanix: A Dynamic Graphical Interface for Snakemake Workflows

Desvillechabrol, D.; Legendre, R.; Rioualen, C.; Bouchier, C.; van Helden, J.; Kennedy, S.; Cokelaer, T.

10.1101/162701 — bioinformatics — Posted on 2017-07-12

927 CRAVAT 4: Cancer-Related Analysis of Variants Toolkit

Masica, D.; Douville, C.; Tokheim, C.; Bhattacharya, R.; Kim, R.; Moad, K.; Ryan, M. C.; Karchin, R.

10.1101/162859 — bioinformatics — Posted on 2017-07-12

928 Blazing Signature Filter: a library for fast pairwise similarity comparisons

Lee, J.-Y.; Fujimoto, G. M.; Wilson, R.; Wiley, H. S.; Payne, S. H.

10.1101/162750 — bioinformatics — Posted on 2017-07-12

929 Rapid and scalable preparation of bacterial lysates for cell-free gene expression

Didovyk, A.; Tonooka, T.; Tsimring, L.; Hasty, J.

10.1101/162768 — synthetic biology — Posted on 2017-07-12

930 AMP-activated protein kinase protects against anoxia in Drosophila melanogaster

Evans, J. J.; Xiao, C.; Robertson, M.

10.1101/162719 — physiology — Posted on 2017-07-12

931 The non-homologous end joining factor Ku orchestrates replication fork resection and fine-tunes Rad51-mediated fork restart

Teixeira-Silva, A.; Ait Saada, A.; Iraqui, I.; Nocente, M. C.; Freon, K.; Hardy, J.; Lambert, S.

10.1101/162677 — genetics — Posted on 2017-07-12

932 Long-term adaptive evolution of genomically recoded Escherichia coli

Wannier, T. M.; Kunjapur, A. M.; Rice, D. P.; McDonald, M. J.; Desai, M. M.; Church, G. M.

10.1101/162834 — evolutionary biology — Posted on 2017-07-12

933 cAMP Signaling Regulates DNA Demethylation by Augmenting the Intracellular Labile Ferrous Iron Pool

Camarena, V.; Sant, D. W.; Huff, T.; Mustafi, S.; Muir, R. K.; Renslo, A. R.; Monje, P.; Wang, G.

10.1101/162743 — cell biology — Posted on 2017-07-12

934 wft4galaxy: A Workflow Tester for Galaxy

Piras, M. E.; Pireddu, L.; Zanetti, G.

10.1101/132001 — bioinformatics — Posted on 2017-07-12

935 Deep convolutional neural networks allow analysis of cell motility during stem cell differentiation and neoplastic transformation

Kimmel, J.; Brack, A.; Marshall, W. F.

10.1101/159202 — bioinformatics — Posted on 2017-07-12

936 The origin of animal multicellularity and cell differentiation

Brunet, T.; King, N.

10.1101/161695 — evolutionary biology — Posted on 2017-07-12

937 Working memory implements distinct maintenance mechanisms depending on task goals

Fahrenfort, J. J.; van Leeuwen, J.; Foster, J.; Awh, E.; Olivers, C. N. L.

10.1101/162537 — neuroscience — Posted on 2017-07-12

938 Collective excitability in a mesoscopic neuronal model of epileptic activity

Jedynak, M.; Pons, A. J.; Garcia-Ojalvo, J.

10.1101/162636 — neuroscience — Posted on 2017-07-12

939 Utilising a Cohort Study of Hepatitis B Virus (HBV) Vaccine-Mediated Immunity in South African Children to Model Infection Dynamics: Can We Meet Global Targets for Elimination by 2030?

McNaughton, A.; Lourenco, J.; Hattingh, L.; Adland, E.; Daniels, S.; van Zyl, A.; Akiror, C. S.; Wareing, S.; Jeffery, K.; Ansari, A.; Klenerman, P.; Goulder, P.; Gupta, S.; Jooste, P.; Matthews, P. C.

10.1101/162594 — microbiology — Posted on 2017-07-12

940 New insights from Thailand into the maternal genetic history of Mainland Southeast Asia

Kutanan, W.; Kampuansai, J.; Brunelli, A.; Ghirotto, S.; Pittayaporn, P.; Ruangchai, S.; Schroder, R.; Macholdt, E.; Srikummool, M.; Kangwanpong, D.; Hubner, A.; Arias Alvis, L.; Stoneking, M.

10.1101/162610 — genetics — Posted on 2017-07-12

941 Developmental constraints on genome evolution in four bilaterian model species

Liu, J.; Robinson-Rechavi, M.

10.1101/161679 — evolutionary biology — Posted on 2017-07-12

942 Adaptive evolution of proteins expressed in late and post-embryonic development in animals

Liu, J.; Robinson-Rechavi, M.

10.1101/161711 — evolutionary biology — Posted on 2017-07-12

943 CRISPR/Cas9-mediated Knock-in of an Optimized TetO Repeat for Live Cell Imaging of Endogenous Loci

Tasan, I.; Sustackova, G.; Zhang, L.; Kim, J.; Sivaguru, M.; HamediRad, M.; Wang, Y.; Genova, J.; Ma, J.; Belmont, A. S.; Zhao, H.

10.1101/162156 — cell biology — Posted on 2017-07-12

944 A Careful Consideration of the Influence of Structure, Partial charges and Basis Sets on Collision Cross Sections of Monosaccharides when Comparing Values from DFT Calculated Conformers to those Obtained Experimentally

Migas, L. G.; Gray, C. J.; Flitsch, S.; Barran, P. E.

10.1101/162305 — biochemistry — Posted on 2017-07-12

945 Advances And Perspectives In Tissue Clearing Using CLARITY

Jensen, K. H. R.; Berg, R. W.

10.1101/144378 — neuroscience — Posted on 2017-07-12

946 Systematic Genetic Dissection Of Chitin Degradation And Uptake In Vibrio cholerae

Hayes, C. A.; Dalia, T. N.; Dalia, A. B.

10.1101/137042 — microbiology — Posted on 2017-07-12

947 In vitro induction and in vivo engraftment of lung bud tip progenitor cells derived from human pluripotent stem cells

Miller, A. J.; Hill, D. R.; Nagy, M. S.; Aoki, Y.; Dye, B. R.; Chin, A. M.; Huang, S.; Zhu, F.; White, E. S.; Lama, V.; Spence, J. R.

10.1101/108845 — developmental biology — Posted on 2017-07-12

948 Improving Gene Regulatory Network Inference by Incorporating Rates of Transcriptional Change

Desai, J.; Sartor, R. C.; Lawas, L. M.; Jagadish, K. S. V.; Doherty, C. J.

10.1101/093807 — bioinformatics — Posted on 2017-07-12

949 QuASAR-MPRA: Accurate allele-specific analysis for massively parallel reporter assays

Kalita, C. A.; Moyerbrailean, G. A.; Brown, C.; Wen, X.; Luca, F.; Pique-Regi, R.

10.1101/105627 — bioinformatics — Posted on 2017-07-12

950 5-Hydroxymethylcytosine signatures in cell-free DNA provide information about tumor types and stages

Song, C.-X.; Yin, S.; Ma, L.; Wheeler, A.; Chen, Y.; Zhang, Y.; Liu, B.; Xiong, J.; Zhang, W.; Hi, J.; Zhou, Z.; Dong, B.; Tian, Z.; Jeffrey, S. S.; Chua, M.-S.; So, S.; Li, W.; Wei, Y.; Diao, J.; Xie, D.; Quake, S. R.

10.1101/162081 — genomics — Posted on 2017-07-12

951 Assembly of hundreds of microbial genomes from the cow rumen reveals novel microbial species encoding enzymes with roles in carbohydrate metabolism

Stewart, R.; Auffret, M.; Warr, A.; Snelling, T.; Dewhurst, R.; Walker, A.; Roehe, R.; Watson, M.

10.1101/162578 — genomics — Posted on 2017-07-12

952 A Strategy for Large-Scale Systematic Pan-Cancer Germline Rare Variation Analysis

Artomov, M.; Joseph, V.; Tiao, G.; Thomas, T.; Schrader, K.; Klein, R.; Kiezun, A.; Gupta, N.; Margolin, L.; Stratigos, A. J.; Kim, I.; Shannon, K.; Ellisen, L. W.; Haber, D.; Getz, G.; Tsao, H.; Lipkin, S.; Altshuler, D.; Offit, K.; Daly, M. J.

10.1101/162479 — genetics — Posted on 2017-07-12

953 A Comparison of Methods for Estimating Substitution Rates from Ancient DNA Sequence Data

Tong, K. J.; Duchene, D. A.; Duchene, S.; Geohegan, J. L.; Ho, S. Y. W.

10.1101/162529 — evolutionary biology — Posted on 2017-07-12

954 The relationship between the spatial scaling of biodiversity and ecosystem stability

Delsol, R.; Loreau, M.; Haegeman, B.

10.1101/162511 — ecology — Posted on 2017-07-12

955 Rapid isolation of functionally intact nuclei from the yeast Saccharomyces

Niepel, M.; Farr, J.; Rout, M. P.; Strambio De Castillia, C.

10.1101/162388 — cell biology — Posted on 2017-07-12

956 Isoflurane reduces feedback in the fruit fly brain

Cohen, D.; van Swinderen, B.; Tsuchiya, N.

10.1101/161976 — neuroscience — Posted on 2017-07-12

957 Laterality of the frontal aslant tract (FAT) explains externalizing behaviors through its association with executive function.

Garic, D.; Broce, I.; Graziano, P.; Mattfeld, A.; Dick, A. S.

10.1101/162495 — neuroscience — Posted on 2017-07-12

958 Why Does the Neocortex Have Layers and Columns, A Theory of Learning the 3D Structure of the World

Hawkins, J.; Ahmad, S.; Cui, Y.

10.1101/162263 — neuroscience — Posted on 2017-07-12

959 The Evolution of Fair Offers with Low Rejection Thresholds in the Ultimatum Game

Schank, J. C.; Miller, M. L.; Smaldino, P. E.

10.1101/162313 — evolutionary biology — Posted on 2017-07-12

960 Human activities influence the direction and magnitude of local biodiversity change over time

Dunic, J. C.; Elahi, R.; Hensel, M. J. S.; Kearns, P. J.; O'Connor, M. I.; Acuna, D.; Honig, A.; Wilson, A. R.; Byrnes, J. E. K.

10.1101/162362 — ecology — Posted on 2017-07-12

961 Rapid Detection of Norovirus Using Paper-based Microfluidic Device

Weng, X.; Neethirajan, S.

10.1101/162396 — bioengineering — Posted on 2017-07-12

962 Self-assembled Star-shaped Chiroplasmonic Gold Nanoparticles for Ultrasensitive Chiro-immunosensor of Viruses

Ahmed, S. R.; Nagy, E.; Neethirajan, S.

10.1101/162412 — bioengineering — Posted on 2017-07-12

963 Chitozyme: First Peroxidase-like Activity of Chitosan for Multiplexed Visual Detection of H2O2, Glucose and Lactate on Paper-based Device

Ahmed, S. R.; Weng, X.; Neethirajan, S.

10.1101/162446 — bioengineering — Posted on 2017-07-12

964 Paper based microfluidic aptasensor for food safety

Weng, X.; Neethirajan, S.

10.1101/162438 — bioengineering — Posted on 2017-07-12

965 Drivers of genetic diversity in secondary metabolic gene clusters in a fungal population

Lind, A. L.; Wisecaver, J. H.; Lameiras, C.; Wiemann, P.; Palmer, J. M.; Keller, N. P.; Rodrigues, F.; Goldman, G. H.; Rokas, A.

10.1101/149856 — genomics — Posted on 2017-07-11

966 A broad role for YBX1 in defining the small non-coding RNA composition of exosomes

Shurtleff, M. J.; Yao, J.; Qin, Y.; Nottingham, R. M.; Temoche-Diaz, M.; Schekman, R.; Lambowitz, A.

10.1101/160556 — cell biology — Posted on 2017-07-11

967 The medial frontal cortex generates rhythmic activity that encodes reward value

Amarante, L. M.; Caetano, M. A.; Laubach, M.

10.1101/144550 — neuroscience — Posted on 2017-07-11

968 Discrete dynamical model of mechanisms determining the relations of biodiversity and stability at different levels of organization of living matter

Bespalov, Y.; Nosov, K.; Kabalyants, P.

10.1101/161687 — systems biology — Posted on 2017-07-11

969 GPS2 regulates mitochondria biogenesis via mitochondrial retrograde signaling and chromatin remodeling of nuclear-encoded mitochondrial genes

Cardamone, M. D.; Tanasa, B.; Cederquist, C.; Huang, J.; Mahdaviani, K.; Li, W.; Rosenfeld, M. G.; Liesa, M.; Perissi, V.

10.1101/162297 — molecular biology — Posted on 2017-07-11

970 Sex- and genotype-effects on nutrient-dependent fitness landscapes in Drosophila melanogaster

Camus, M. F.; Fowler, K.; Piper, M. W. D.; Reuter, M.

10.1101/162107 — evolutionary biology — Posted on 2017-07-11

971 Detecting environment-dependent diversification from phylogenies: a simulation study and some empirical illustrations

Lewitus, E.; Morlon, H.

10.1101/162248 — evolutionary biology — Posted on 2017-07-11

972 Feedback regulation of steady-state epithelial turnover and organ size

Liang, J.; Balachandra, S.; Ngo, S.; O'Brien, L. E.

10.1101/161943 — developmental biology — Posted on 2017-07-11

973 Curvature regulates subcellular organelle location to control intracellular signal propagation

Calizo, R. C.; Ron, A.; Hu, M.; Bhattacharya, S.; Janssen, W. G. M.; Hone, J.; Scarlata, S.; Rangamani, P.; Iyengar, R.

10.1101/161950 — cell biology — Posted on 2017-07-11

974 Conformational locking of Ufm1 upon binding to the Ufm1-interacting sequence of Uba5

Kelly, R. T.; Oweis, W.; Wiener, R.; Berndsen, C. E.

10.1101/161802 — biochemistry — Posted on 2017-07-11

975 A Careful Consideration of the Influence of Structure, Partial charges and Basis Sets on Collision Cross Sections of Monosaccharides when Comparing Values from DFT Calculated Conformers to those Obtained Experimentally

Migas, L. G.; Gray, C. J.; Flitsch, S.; Barran, P. E.

10.1101/162305 — biochemistry — Posted on 2017-07-11

976 The effect of depth variation on disparity tasks in natural scenes

Iyer, A. V.; Burge, J. D.

10.1101/162222 — neuroscience — Posted on 2017-07-11

977 Common Garlic (Allium sativum) has Potent Anti-Bacillus anthracis Activity among Various Commonly Used Spices and Herbs

Kaur, R.; Tiwari, A.; Manish, M.; Maurya, I. K.; Bhatnagar, R.; Singh, S.

10.1101/162214 — microbiology — Posted on 2017-07-11

978 Synthetically Engineered Medea Gene Drive System in the Worldwide Crop Pest, D. suzukii

Buchman, A.; Marshall, J.; Ostrovski, D.; Yang, T.; Akbari, O. S.

10.1101/162255 — genetics — Posted on 2017-07-11

979 The maternal genetic history of the Angolan Namib Desert: a key region for understanding the peopling of southern Africa

Oliveira, S.; Fehn, A.-M.; Aco, T.; Lages, F.; Gaya-Vidal, M.; Pakendorf, B.; Stoneking, M.; Rocha, J.

10.1101/162230 — genetics — Posted on 2017-07-11

980 The evolutionary history of 2,658 cancers

Gerstung, M.; Jolly, C.; Leshchiner, I.; Dentro, S. C.; Gonzalez, S.; Mitchell, T. J.; Rubanova, Y.; Anur, P.; Rosebrock, D.; Yu, K.; Tarabichi, M.; Deshwar, A.; Wintersinger, J.; Kleinheinz, K.; Vazquez-Garcia, I.; Haase, K.; Sengupta, S.; Macintyre, G.; Malikic, S.; Donmez, N.; Livitz, D. G.; Cmero, M.; Demeulemeester, J.; Schumacher, S.; Fan, Y.; Yao, X.; Lee, J.; Schlesner, M.; Boutros, P. C.; Bowtell, D. D.; Zhu, H.; Getz, G.; Imielinski, M.; Beroukhim, R.; Sahinalp, S. C.; Ji, Y.; Peifer, M.; Markowetz, F.; Mustonen, V.; Yuan, K.; Wang, W.; Morris, Q. D.; Spellman, P. T.; Wedge, D. C.; V

10.1101/161562 — cancer biology — Posted on 2017-07-11

981 Reducing Pyrrolysine tRNA Copy Number Improves the Performance of Genetic Code Expansion in Live Cell Imaging of Bioorthogonally Labeled Proteins

Aloush, N.; Schvartz, T.; König, A.; Cohen, S.; Nachmias, D.; Ben-David, O.; Elia, N.; Arbely, E.

10.1101/161984 — synthetic biology — Posted on 2017-07-11

982 Chill coma in the locust, Locusta migratoria, is initiated by spreading depolarization in the central nervous system

Robertson, M.; Spong, K. E.; Srithiphaphirom, P.

10.1101/162198 — physiology — Posted on 2017-07-11

983 Multi-method brain imaging reveals impaired representations as well as altered connectivity in adults with dyscalculia

Bulthe, J.; Prinsen, J.; Vanderauwera, J.; Duyck, S.; Daniels, N.; Gillebert, C. R.; Mantini, D.; Op de Beeck, H. P.; De Smedt, B.

10.1101/162115 — neuroscience — Posted on 2017-07-11

984 Heterogeneity of cognitive decline in dementia: a failed attempt to take into account variable time-zero severity

Kiddle, S. J.; Parodi, A.; Johnston, C.; Wallace, C.; Dobson, R.

10.1101/060830 — neuroscience — Posted on 2017-07-11

985 Discovery-oriented teaching: The use of chimeric proteorhodopsins for the development of a lab curriculum in marine microbiology and for the discovery of natural red-shifted proteorhodopsins

Pushkarev, A.; Hevroni, G.; Roitman, S.; Shim, J.-g.; Choi, A.; Jung, K.-H.; Beja, O.

10.1101/162016 — microbiology — Posted on 2017-07-11

986 The Nuclear And Mitochondrial Genomes Of The Facultatively Eusocial Orchid Bee Euglossa dilemma

Brand, P.; Saleh, N.; Pan, H.; Li, C.; Kapheim, K.; Ramirez, S.

10.1101/123687 — genomics — Posted on 2017-07-11

987 Genome-Wide Analysis Of Repetitive Elements Associated With Gene Regulation

Zeng, L.; Pederson, S.; Cao, D. F.; Qu, Z. P.; Hu, Z. Q.; Adelson, D.; Wei, C. C.

10.1101/142018 — genomics — Posted on 2017-07-11

988 Comprehensive Pathway Analyses Of Schizophrenia Risk Loci Point To Dysfunctional Postsynaptic Signaling

Schijven, D.; Kofink, D.; Tragante, V.; Verkerke, M.; Pulit, S. L.; Kahn, R. S.; Veldink, J. H.; Vinkers, C. H.; Boks, M. P.; Luykx, J. J.

10.1101/117481 — genetics — Posted on 2017-07-11

989 Procedures for enumerating and uniformly sampling transmission trees for a known phylogeny

Hall, M. D.

10.1101/160812 — evolutionary biology — Posted on 2017-07-11

990 Flat-to-curved transition during clathrin-mediated endocytosis correlates with a change in clathrin-adaptor ratio and is regulated by membrane tension

Bucher, D.; Frey, F.; Sochacki, K. A.; Kummer, S.; Bergeest, J.-P.; Godinez, W. J.; Kraeusslich, H.-G.; Rohr, K.; Taraska, J. W.; Schwarz, U. S.; Boulant, S.

10.1101/162024 — cell biology — Posted on 2017-07-11

991 TumorFusions: an integrative resource for reporting cancer-associated transcript fusions in 33 tumor types

Hu, X.; Wang, Q.; Barthel, F. P.; Tang, M.; Amin, S.; Yoshihara, K.; Lang, F. M.; Lee, S. H.; Zheng, S.; Verhaak, R.

10.1101/162180 — cancer biology — Posted on 2017-07-11

992 Traction force screening enabled by compliant PDMS elastomers

Yoshie, H.; Koushki, N.; Kaviani, R.; Rajendran, K.; Dang, Q.; Husain, A.; Yao, S.; Li, C.; Sullivan, J. K.; Saint-Geniez, M.; Krishnan, R.; Ehrlicher, A.

10.1101/162206 — biophysics — Posted on 2017-07-11

993 Text mining of 15 million full-text scientific articles

Westergaard, D.; Staerfeldt, H.-H.; Tonsberg, C.; Jensen, L. J.; Brunak, S.

10.1101/162099 — bioinformatics — Posted on 2017-07-11

994 A dual-mode mobile phone microscope using integrated and ambient light

Orth, A.; Wilson, E.; Thompson, J.; Gibson, B. C.

10.1101/162008 — bioengineering — Posted on 2017-07-11

995 Isoflurane produces antidepressant effects and induces TrkB signaling in rodents

Antila, H.; Ryazantseva, M.; Popova, D.; Sipila, P.; Guirado, R.; Kohtala, S.; Yalcin, I.; Lindholm, J.; Vesa, L.; Sato, V.; Cordeira, J.; Autio, H.; Kislin, M.; Rios, M.; Joca, S.; Casarotto, P.; Khiroug, L.; Lauri, S.; Taira, T.; Castren, E.; Rantamaki, T.

10.1101/084525 — neuroscience — Posted on 2017-07-11

996 Methyl donor deficient diets cause distinct alterations in lipid metabolism but are poorly representative of human NAFLD

Lyall, M. J.; Cartier, J.; Richards, J. A.; Cobice, D.; Thomson, J. P.; Meehan, R. R.; Anderton, S. M.; Drake, A. J.

10.1101/162131 — molecular biology — Posted on 2017-07-11

997 When rarity has costs: coexistence under positive frequency-dependence and environmental stochasticity

Schreiber, S.; Yamamichi, M.; Strauss, S.

10.1101/161919 — ecology — Posted on 2017-07-11

998 Sympathetic Transmitters Controlling Thermogenic Efficacy of Brown Adipocytes by Modulating Mitochondrial Complex V

Xie, T.-R.; Liu, C.-F.; Kang, J.-S.

10.1101/161968 — cell biology — Posted on 2017-07-11

999 2-Way k-Means as a Model for Microbiome Samples

Jackson, W. J.; Agarwal, I.; Pe'er, I.

10.1101/161935 — bioinformatics — Posted on 2017-07-11

1000 Bending of the BST-2 coiled-coil during viral budding

Ozcan, K. A.; Berndsen, C.

10.1101/160242 — biochemistry — Posted on 2017-07-11

1001 Personalized intrinsic network topography mapping and functional connectivity deficits in Autism Spectrum Disorder

Dickie, E. W.; Ameis, S. H.; Viviano, J. D.; Smith, D. E.; Calarco, N.; Shahab, S.; Voineskos, A.

10.1101/161893 — neuroscience — Posted on 2017-07-11

1002 Agrochemical pollution increases risk of human exposure to schistosome parasites

Halstead, N.; Hoover, C.; Arakala, A.; Civitello, D. J.; De Leo, G.; Gambhir, M.; Johnson, S. A.; Loerns, K. A.; McMahon, T. A.; Nguyen, K.; Raffel, T. R.; Remais, J. V.; Sokolow, S. H.; Rohr, J. R.

10.1101/161901 — ecology — Posted on 2017-07-11

1003 omniCLIP: Bayesian identification of protein-RNA interactions from CLIP-Seq data

Drewe-Boss, P.; Wessels, H.-H.; Ohler, U.

10.1101/161877 — bioinformatics — Posted on 2017-07-11

1004 A Synthetic Microbial Operational Amplifier

Zeng, J.; Kim, J.; Banerjee, A.; Sarpeshkar, R.

10.1101/161828 — synthetic biology — Posted on 2017-07-10

1005 Diabetes and dementia incidence in Latin America; a 10/66 population-based cohort study

Salas, A.; Acosta, D. M.; Guerra, M.; Huang, Y.; Jimenez-Velazquez, I. Z.; Llibre Rodriguez, J. J.; Sosa, A. L.; Dewey, M. E.; Gaona, C.; Guerchet, M. M.; Gonzalez, L. M.; Liu, Z.; Luchsinger, J. A.; Lopez Medina, A. M.; Salinas, R. M.; Prince, M. J.

10.1101/148155 — epidemiology — Posted on 2017-07-10

1006 Pediatric hospitalizations associated with respiratory syncytial virus (RSV) and influenza, and the frequency of asthma as a secondary diagnosis

Goldstein, E.

10.1101/161067 — epidemiology — Posted on 2017-07-10

1007 The causal direction in the association between Parkinson’s disease and cigarette or nicotine use

Grzesiak, N.

10.1101/161240 — epidemiology — Posted on 2017-07-10

1008 Sexually divergent DNA methylation programs with hippocampal aging

Masser, D.; Hadad, N.; Porter, H.; Mangold, C.; Unnikrishnan, A.; Ford, M.; Giles, C.; Georgescu, C.; Dozmorov, M.; Wren, J.; Richardson, A.; Stanford, D.; Freeman, W.

10.1101/161752 — neuroscience — Posted on 2017-07-10

1009 Geospatial statistics of high field functional MRI reveal topographical clustering for binocular stereo depth in early visual cortex

Parker, A. J.; Coullon, G.; Sanchez-Panchuelo, R.; Francis, S.; Clare, S.; Kay, D.; Duff, E.; Minini, L.; Jbabdi, S.; Schluppeck, D.; Bridge, H.

10.1101/160788 — neuroscience — Posted on 2017-07-10

1010 Quantitating Translational Control: mRNA Abundance-Dependent and Independent Contributions and the mRNA Sequences That Specify Them

Li, J. J.; Chew, G.-L.; Biggin, M. D.

10.1101/116913 — genomics — Posted on 2017-07-10

1011 Sequential regulatory activity prediction across chromosomes with convolutional neural networks

Kelley, D. R.; Reshef, Y. A.

10.1101/161851 — genomics — Posted on 2017-07-10

1012 microCT-Based Phenomics in the Zebrafish Skeleton Reveals Virtues of Deep Phenotyping in a Distributed Organ System

Hur, M.; Gistelinck, C. A.; Huber, P.; Lee, J.; Thompson, M. H.; Monstad-Rios, A. T.; Watson, C. J.; McMenamin, S. K.; Willaert, A.; Parichy, D. M.; Coucke, P.; Kwon, R. Y.

10.1101/105569 — genetics — Posted on 2017-07-10

1013 Parallel use of a shared genomic island of speciation in clinal and mosaic hybrid zones between cryptic seahorse lineages

Riquet, F.; Liautard-Haag, C.; Woodall, L.; Bouza, C.; Louisy, P.; Hamer, B.; Otero-Ferrer, F.; Aublanc, P.; Beduneau, V.; Briard, O.; El Ayari, T.; Hochscheid, S.; Belkhir, K.; Arnaud-Haond, S.; Gagnaire, P.-A.; Bierne, N.

10.1101/161786 — evolutionary biology — Posted on 2017-07-10

1014 Adaptive evolution of proteins expressed in late and post-embryonic development in animals

Liu, J.; Robinson-Rechavi, M.

10.1101/161711 — evolutionary biology — Posted on 2017-07-10

1015 Climate-driven shifts in sediment chemistry enhance methane production in northern lakes

Emilson, E. J.; Carson, M. A.; Yakimovich, K. M.; Gunn, J. M.; Mykytczuk, N. C.; Basiliko, N.; Tanentzap, A. J.

10.1101/161653 — ecology — Posted on 2017-07-10

1016 Socio-affective touch expression database

Lee Masson, H.; Op de Beeck, H.

10.1101/161729 — neuroscience — Posted on 2017-07-10

1017 Beta-Band Oscillations without Pathways: the opposing Roles of D2 and D5 Receptors

Lienard, J. F.; Cos, I.; Girard, B.

10.1101/161661 — neuroscience — Posted on 2017-07-10

1018 Investigating the occurrence of E. coli O157:H7 in the final effluents of two wastewater treatment plants

Osuolale, O.; Okoh, A. I.

10.1101/161737 — microbiology — Posted on 2017-07-10

1019 Neurotropism of enterovirus D68 isolates is independent of sialic acid and is not a recently acquired phenotype

Rosenfeld, A. B.; Warren, A. L.; Racaniello, V. R.

10.1101/161778 — microbiology — Posted on 2017-07-10

1020 Transcriptional responses of Escherichia coli during recovery from inorganic or organic mercury exposure

LaVoie, S. P.; Summers, A. O.

10.1101/161646 — microbiology — Posted on 2017-07-10

1021 Computational correction of copy-number effect improves specificity of CRISPR-Cas9 essentiality screens in cancer cells

Meyers, R. M.; Bryan, J. G.; McFarland, J. M.; Weir, B. A.; Sizemore, A. E.; Xu, H.; Dharia, N. V.; Montgomery, P. G.; Cowley, G. S.; Pantel, S.; Goodale, A.; Lee, Y.; Ali, L. D.; Jiang, G.; Lubonja, R.; Harrington, W. F.; Strickland, M.; Wu, T.; Hawes, D. C.; Zhivich, V. A.; Wyatt, M. R.; Kalani, Z.; Chang, J. J.; Okamoto, M.; Golub, T. R.; Boehm, J. S.; Vazquez, F.; Root, D. E.; Hahn, W. C.; Tsherniak, A.

10.1101/160861 — genomics — Posted on 2017-07-10

1022 Large-Scale Uniform Analysis of Cancer Whole Genomes in Multiple Computing Environments

Yung, C. K.; O'Connor, B. D.; Yakneen, S.; Zhang, J.; Ellrott, K.; Kleinheinz, K.; Miyoshi, N.; Raine, K. M.; Royo, R.; Saksena, G. B.; Schlesner, M.; Shorser, S. I.; Vazquez, M.; Weischenfeldt, J.; Yuen, D.; Butler, A. P.; Davis-Dusenbery, B. N.; Eils, R.; Ferretti, V.; Grossman, R. L.; Harismendy, O.; Kim, Y.; Nakagawa, H.; Newhouse, S. J.; Torrents, D.; Stein, L. D.; - PCAWG Technical Working Group,

10.1101/161638 — genomics — Posted on 2017-07-10

1023 Developmental constraints on genome evolution in four bilaterian model species

Liu, J.; Robinson-Rechavi, M.

10.1101/161679 — evolutionary biology — Posted on 2017-07-10

1024 Dissecting causal pathways using Mendelian randomization with summarized genetic data: application to age at menarche and risk of breast cancer

Burgess, S.; Thompson, D. J.; Rees, J. M. B.; Day, F. R.; Perry, J. R.; Ong, K. K.

10.1101/160663 — epidemiology — Posted on 2017-07-10

1025 pulse2percept: A Python-based simulation framework for bionic vision

Beyeler, M.; Boynton, G. M.; Fine, I.; Rokem, A.

10.1101/148015 — neuroscience — Posted on 2017-07-10

1026 On the mechanism of long-range alignment order of fibroblasts

Li, X.; Balagam, R.; He, T.-F.; Lee, P. P.; Igoshin, O. A.; Levine, H.

10.1101/119669 — biophysics — Posted on 2017-07-10

1027 A Novel Nasal Brush-based Classifier of Asthma Identified by Machine Learning Analysis of Nasal RNA Sequence Data

Pandey, G.; Pandey, O. P.; Rogers, A. J.; Hoffman, G. E.; Raby, B. A.; Weiss, S. T.; Schadt, E. E.; Bunyavanich, S.

10.1101/145771 — systems biology — Posted on 2017-07-10

1028 Quantitating Translational Control: mRNA Abundance-Dependent and Independent Contributions and the mRNA Sequences That Specify Them

Li, J. J.; Chew, G.-L.; Biggin, M. D.

10.1101/116913 — genomics — Posted on 2017-07-10

1029 Transcriptional decomposition reveals active chromatin architectures and cell specific regulatory interactions

Rennie, S.; Dalby, M.; van Duin, L.; Andersson, R.

10.1101/130070 — genomics — Posted on 2017-07-10

1030 Immune Loss as a Driver of Coexistence During Host-Phage Coevolution

Weissman, J. L.; Holmes, R.; Barrangou, R.; Moineau, S.; Fagan, W. F.; Levin, B. R.; Johnson, P. L.

10.1101/105908 — ecology — Posted on 2017-07-10

1031 A preferred curvature-based continuum mechanics framework for modeling embryogenesis with application to Drosophila mesoderm invagination

Khairy, K.; Lemon, W.; Amat, F.; Keller, P.

10.1101/029355 — biophysics — Posted on 2017-07-10

1032 Science Game Lab: tool for the unification of biomedical games with a purpose

Good, B.; Santini, S.; Wallace, M.; Fortugno, N.; Szeder, J.; Mooney, P.; Waldispuhl, J.; Tsueng, G.; Su, A. I.

10.1101/156141 — bioinformatics — Posted on 2017-07-10

1033 Protein identification with a nanopore and a binary alphabet

Sampath, G.

10.1101/119313 — bioengineering — Posted on 2017-07-10

1034 The experimental design and data interpretation in “Unexpected mutations after CRISPR–Cas9 editing in vivo” by Schaefer et al. are insufficient to support the conclusions drawn by the authors

Wilson, C. J.; Fennell, T.; Bothmer, A.; Maeder, M. L.; Reyon, D.; Cotta-Ramusino, C.; Fernandez, C. A.; Marco, E.; Barrera, L. A.; Jayaram, H.; Albright, C. F.; Cox, G. F.; Church, G. M.; Myer, V. E.

10.1101/153338 — genetics — Posted on 2017-07-10

1035 Procedures for enumerating and uniformly sampling transmission trees for a known phylogeny

Hall, M. D.

10.1101/160812 — evolutionary biology — Posted on 2017-07-10

1036 Aerobiosis Decreases the Genomic GC content in Prokaryotes by Guanine Oxidation

Aslam, S.; Lan, X.-R.; Niu, D.-K.

10.1101/154534 — evolutionary biology — Posted on 2017-07-10

1037 Mutation-Profile-Based Methods for Understanding Selection Forces in Cancer Somatic Mutations: A Comparative Analysis

Zhou, Z.; Zou, Y.; Liu, G.; Zhou, J.; Wu, J.; Zhao, S.; Su, Z.; Gu, X.

10.1101/021147 — cancer biology — Posted on 2017-07-10

1038 GEM: A manifold learning based framework for reconstructing spatial organizations of chromosomes

Zhu, G.; Deng, W.; Hu, H.; Ma, R.; Zhang, S.; Yang, J.; Peng, J.; Kaplan, T.; Zeng, J.

10.1101/161208 — bioinformatics — Posted on 2017-07-10

1039 LM6-M: a high avidity rat monoclonal antibody to pectic α-1,5-L-arabinan

Cornuault, V.; Buffetto, F.; Marcus, S. E.; Crepeau, M.-J.; Guillon, F.; Ralet, M.-C.; Knox, P.

10.1101/161604 — plant biology — Posted on 2017-07-10

1040 CropQuant: An automated and scalable field phenotyping platform for crop monitoring and trait measurements to facilitate breeding and digital agriculture

Zhou, J.; Reynolds, D.; Websdale, D.; Le Cornu, T.; Gonzalez-Navarro, O.; Lister, C.; Orford, S.; Laycock, S.; Finlayson, G.; Stitt, T.; Clark, M.; Bevan, M.; Griffiths, S.

10.1101/161547 — plant biology — Posted on 2017-07-10

1041 Relevance learning via inhibitory plasticity and its implications for schizophrenia

Insel, N.; Richards, B.

10.1101/161331 — neuroscience — Posted on 2017-07-10

1042 Disrupted modular organization of primary sensory brain areas in schizophrenics

Bordier, C.; Nicolini, C.; Bifone, A.

10.1101/161521 — neuroscience — Posted on 2017-07-10

1043 Gene flow between divergent cereal- and grass-specific lineages of the rice blast fungus Magnaporthe oryzae

10.1101/161513 — microbiology — Posted on 2017-07-10

1044 Maize Phyllosphere Microbial Community Niche Development Across Stages of Host Leaf Growth

Manching, H.; Carlson, K.; Kosowsky, S.; Smitherman, C. T.; Stapleton, A. E.

10.1101/161158 — microbiology — Posted on 2017-07-10

1045 The Acquisition of Resistance to Carbapenem and Macrolide-mediated Quorum Sensing Inhibition by Pseudomonas aeruginosa via a Novel Integrative and Conjugative Element ICETn43716385

Ding, Y.; Teo, J.; Drautz-Moses, D. I.; Schuster, S. C.; Givskov, M.; Yang, L.

10.1101/161497 — genomics — Posted on 2017-07-10

1046 Whole exome sequencing study of colorectal cancer in Chinese population reveals novel prevalently mutated genes and decreased mutation frequency of APC and Wnt signaling in lymph node positive cancer

Liu, Z.; Yang, C.; Yang, M.; Zhou, Y.; Li, X.; Luo, W.; Roy, B.; Xiong, T.; Zhang, X.; Yang, H.; Wang, J.; Ye, Z.; Chen, Y.; Fang, X.; Du, J.

10.1101/155671 — genomics — Posted on 2017-07-10

1047 Why are tropical mountain passes ‘low’ for some species? Genetic and stable-isotope tests for differentiation, migration, and expansion in elevational generalist songbirds

Gadek, C. R.; Newsome, S. D.; Beckman, E. J.; Chavez, A. C.; Galen, S. C.; Bautista, E.; Witt, C. C.

10.1101/161380 — evolutionary biology — Posted on 2017-07-10

1048 Why acute infections by human papillomaviruses matter

Alizon, S.; Murall, C. L.; Bravo, I. G.

10.1101/144576 — epidemiology — Posted on 2017-07-10

1049 Molluscs community associated with the brown algae of the genus Cystoseira in the Gulf of Naples (South Tyrrhenian Sea)

Chiarore, A.; Fioretti, S.; Meccariello, A.; Saccone, G.; Patti, F. P.

10.1101/160200 — ecology — Posted on 2017-07-10

1050 Toxicity of 2 pg ethynylestradiol in brown trout embryos (Salmo trutta)

Marques da Cunha, L.; Uppal, A.; Seddon, E.; Nusbaumer, D.; Vermeirssen, E.; Wedekind, C.

10.1101/161570 — ecology — Posted on 2017-07-10

1051 De novo organelle biogenesis in the cyanobacterium TDX16 released from the green alga Haematococcus pluvialis

Dong, Q.-l.; Xing, X.-y.; Han, Y.; Wei, X.-l.; Zhang, S.

10.1101/161463 — cell biology — Posted on 2017-07-10

1052 Improving Phenotypic Measurements in High-Content Imaging Screens

Ando, D. M.; McLean, C.; Berndl, M.

10.1101/161422 — cell biology — Posted on 2017-07-10

1053 SRSF shape analysis for sequencing data reveal newdifferentiating patterns

Wesolowski, S.; Vera, D.; Wu, W.

10.1101/161448 — bioinformatics — Posted on 2017-07-10

1054 Overcoming insecticide resistance through computational inhibitor design

Correy, G.; Zaidman, D.; Carvalho, S.; Mabbitt, P. D.; James, P. J.; Kotze, A. C.; London, N.; Jackson, C. J.

10.1101/161430 — biochemistry — Posted on 2017-07-10

1055 Virtual Reality system for freely-moving rodents.

Del Grosso, N. A.; Graboski, J. J.; Chen, W.; Blanco Hernandez, E.; Sirota, A.

10.1101/161232 — animal behavior and cognition — Posted on 2017-07-10

1056 Imprinted loci may be more widespread in humans than previously appreciated and enable limited assignment of parental allelic transmissions in unrelated individuals

Cuellar Partida, G.; Laurin, C.; Ring, S.; Gaunt, T. R.; Relton, C. L.; Davey Smith, G.; Evans, D.

10.1101/161471 — genomics — Posted on 2017-07-10

1057 The coefficient of determination R2 and intra-class correlation coefficient from generalized linear mixed-effects models revisited and expanded

Nakagawa, S.; Johnson, P. C. D.; Schielzeth, H.

10.1101/095851 — ecology — Posted on 2017-07-10

1058 Drosophila PLP forms centriolar-clouds that promote centriole stability, cohesion and MT nucleation

Roque, H.; Pratt, M.; Johnson, E.; Raff, J.

10.1101/161554 — cell biology — Posted on 2017-07-10

1059 Development and molecular characterization of wheat-Aegilops peregrina Introgression Lines with resistance to leaf rust and stripe rust

Narang, D.; Kaur, S.; Saini, J.; Chhuneja, P.

10.1101/160648 — genetics — Posted on 2017-07-10

1060 FAM192A/PIP30 regulates Cajal body dynamics by antagonizing PA28γ/coilin interaction

Jonik-Nowak, B.; Fesquet, D.; Baldin, V.; Mechali, F.; Bonne-Andrea, C.; De Rossi, S.; Lamond, A. I.; Boulon, S.; Coux, O.

10.1101/160739 — cell biology — Posted on 2017-07-10

1061 Scientific Theories and Artificial Intelligence

Desjardins-Proulx, P.; Poisot, T.; Gravel, D.

10.1101/161125 — scientific communication and education — Posted on 2017-07-10

1062 Skin photoreceptors in the leopard frog

Wald, G.; Rayport, S.

10.1101/161364 — neuroscience — Posted on 2017-07-09

1063 Development and molecular characterization of wheat-Aegilops peregrina Introgression Lines with resistance to leaf rust and stripe rust

Narang, D.; Kaur, S.; Saini, J.; Chhuneja, P.

10.1101/160648 — genetics — Posted on 2017-07-09

1064 Genome-wide Association Study of Clinical Features in the Schizophrenia Psychiatric Genomics Consortium: Confirmation of Polygenic Effect on Negative Symptoms

Bigdeli, T.; Peterson, R.; Ripke, S.; Bacanu, S.-A.; Amdur, R.; Gejman, P.; Levinson, D.; Riley, B.; St. Clair, D.; Rietschel, M.; Walters, J.; Ophoff, R.; McQuillin, A.; Gurling, H.; Rujescu, D.; Sullivan, P.; Kirov, G.; Pato, M.; Pato, C.; Andreassen, O.; Owen, M.; O'Donovan, M.; Corvin, A.; Malhotra, A.; Mowry, B.; Esko, T.; Werge, T.; Kendler, K.; - Schizophrenia Working Group, Psychiatric Genomics, ; Fanous, A.

10.1101/161349 — genetics — Posted on 2017-07-09

1065 Adaptations of an RNA virus to increasing thermal stress

Singhal, S.; Leon Guerrero, C. M.; Whang, S. G.; McClure, E. M.; Busch, H. G.; Kerr, B.

10.1101/160549 — evolutionary biology — Posted on 2017-07-09

1066 GEM: A manifold learning based framework for reconstructing spatial organizations of chromosomes

Zhu, G.; Deng, W.; Hu, H.; Ma, R.; Zhang, S.; Yang, J.; Peng, J.; Kaplan, T.; Zeng, J.

10.1101/161208 — bioinformatics — Posted on 2017-07-09

1067 DddY is a bacterial dimethylsulfoniopropionate lyase representing a new cupin enzyme superfamily with unknown primary function

Lei, L.; Alcolombri, U.; Tawfik, D. S.

10.1101/161257 — biochemistry — Posted on 2017-07-09

1068 Adhesion of dry and wet cribellate capture silk

Elettro, H.; Neukirch, S.; Antkowiak, A.; Vollrath, F.

10.1101/160408 — zoology — Posted on 2017-07-09

1069 Ecological suicide in microbes

Ratzke, C.; Denk, J. S.; Gore, J.

10.1101/161398 — systems biology — Posted on 2017-07-09

1070 Automated Parameterization of Predictive Kinetic Metabolic Models from Sparse Datasets for Efficient Optimization of Many-Enzyme Heterologous Pathways

Halper, S. M.; Farasat, I.; Salis, H. M.

10.1101/161372 — synthetic biology — Posted on 2017-07-09

1071 Additive Dose Response Models: Explicit Formulations and the Loewe Additivity Consistency Condition

Lederer, S.; Dijkstra, T. M. H.; Heskes, T.

10.1101/161059 — pharmacology and toxicology — Posted on 2017-07-09

1072 Episodic, Semantic, Pavlovian, and Procedural Cognitive Maps

Ribas Fernandes, J. J. F.; Holroyd, C. B.

10.1101/161141 — neuroscience — Posted on 2017-07-09

1073 Accurate Immune Repertoire Sequencing Reveals Malaria Infection Driven Antibody Lineage Diversification in Young Children

Wendel, B. S.; He, C.; Qu, M.; Wu, D.; Hernandez, S. M.; Ma, K.-Y.; Liu, E. W.; Xiao, J.; Crompton, P. D.; Pierce, S. K.; Ren, P.; Chen, K.; Jiang, N.

10.1101/160978 — immunology — Posted on 2017-07-09

1074 Revisiting the phylogeny of Zoanthidea (Cnidaria: Anthozoa): staggered alignment of hypervariable sequences improves species tree inference

Swain, T. D.

10.1101/161117 — evolutionary biology — Posted on 2017-07-09

1075 Facilitation between plants shapes pollination networks

Losapio, G.; Fortuna, M.; Bascompte, J.; Schmid, B.; Michalet, R.; Neumeyer, R.; Castro, L.; Cerretti, P.; Germann, C.; Haenni, J.-P.; Klopfstein, S.; Ortiz, J.; Pont, A. C.; Rousse, P.; Schmid, J.; Sommaggio, D.; Schöb, C.

10.1101/161034 — ecology — Posted on 2017-07-09

1076 Investigating termite nest thermodynamics using a quick-look method and the heat equation

Gouttefarde, R.; Bon, R.; Fourcassie, V.; Arrufat, P.; Haifig, I.; Baehr, C.; Jost, C.

10.1101/161075 — ecology — Posted on 2017-07-09

1077 Lineage: Visualizing Multivariate Clinical Data in Genealogy Graphs

Nobre, C.; Gehlenborg, N.; Coon, H.; Lex, A.

10.1101/128579 — bioinformatics — Posted on 2017-07-09

1078 Precision genome editing using synthesis-dependent repair of Cas9-induced DNA breaks

Paix, A.; Folkmann, A.; Goldman, D. H.; Kulaga, H.; Grzelak, M.; Rasoloson, D.; Paidemarry, S.; Green, R.; Reed, R.; Seydoux, G.

10.1101/161109 — synthetic biology — Posted on 2017-07-09

1079 Speed breeding: a powerful tool to accelerate crop research and breeding

Watson, A.; Ghosh, S.; Williams, M.; Cuddy, W. S.; Simmonds, J.; Rey, M.-D.; Hatta, M. A. M.; Hinchliffe, A.; Steed, A.; Reynolds, D.; Adamski, N.; Breakspear, A.; Korolev, A.; Rayner, T.; Dixon, L. E.; Riaz, A.; Martin, W.; Ryan, M.; Edwards, D.; Batley, J.; Raman, H.; Rogers, C.; Domoney, C.; Moore, G.; Harwood, W.; Nicholson, P.; Dieters, M. J.; DeLacy, I. H.; Zhou, J.; Uauy, C.; Boden, S. A.; Park, R. F.; Wulff, B. B. H.; Hickey, L. T.

10.1101/161182 — plant biology — Posted on 2017-07-09

1080 A Supervised Statistical Learning Approach For Accurate Legionella pneumophila Source Attribution During Outbreaks

Buultjens, A.; Chua, K.; Baines, S.; Kwong, J.; Gao, W.; Cutcher, Z.; Adcock, S.; Ballard, S.; Schultz, M. B.; Tomita, T.; Subasinghe, N.; Carter, G.; Pidot, S.; Franklin, L.; Seemann, T.; Goncalves Da Silva, A.; Howden, B.; Stinear, T.

10.1101/133033 — microbiology — Posted on 2017-07-09

1081 Comprehensive Molecular Characterization of Mitochondrial Genomes in Human Cancers

Yuan, Y.; Ju, Y. S.; Kim, Y.; Li, J.; Wang, Y.; Yang, Y.; Martincorena, I.; Creighton, C.; Weinstein, J. N.; Xu, Y.; Han, L.; Kim, H.-L.; Nakagawa, H.; Park, K.; Campbell, P. J.; Liang, H.; - PCAWG Network,

10.1101/161356 — genomics — Posted on 2017-07-09

1082 Habitat diversification promotes environmental selection in planktonic prokaryotes and ecological drift in microbial eukaryotes

Logares, R.; Tesson, S. V. M.; Canbäck, B.; Pontarp, M.; Hedlund, K.; Rengefors, K.

10.1101/161091 — ecology — Posted on 2017-07-09

1083 Coexistence of complete competitors with fitness inequality

Kalmykov, L.; Kalmykov, V.

10.1101/160986 — ecology — Posted on 2017-07-09

1084 A computational modelling framework to quantify the effects of passaging cell lines

Jin, W.; Penington, C. J.; McCue, S. W.; Simpson, M. J.

10.1101/161265 — biophysics — Posted on 2017-07-09

Yu, H.; Spangler, M. L.; Lewis, R. M.; Morota, G.

10.1101/130138 — genetics — Posted on 2017-07-09

1086 Divergence times in demosponges (Porifera): first insights from new mitogenomes and the inclusion of fossils in a birth-death clock model

Schuster, A.; Vargas, S.; Knapp, I.; Pomponi, S. A.; Toonen, R. J.; Erpenbeck, D.; Woerheide, G.

10.1101/159806 — evolutionary biology — Posted on 2017-07-09

1087 Enhancing Ebola Virus Disease Surveillance And Prevention In Counties Without Confirmed Cases In Rural Liberia: Experiences From Sinoe County During The Flare-Up In Monrovia, April To June, 2016

Weah, V. D.; Doedeh, J. S.; Wiah, S. Q.; Nyema, E.; Lombeh, S.; Naiene, J.

10.1101/139154 — epidemiology — Posted on 2017-07-09

1088 Some reasons why latent period should not be considered constant over the course of a plant disease epidemic

Suffert, F.

10.1101/148619 — epidemiology — Posted on 2017-07-09

1089 Genetic Diversity in Circulating Tumor Cell Clusters

Ahmed, Z.; Gravel, S.

10.1101/113480 — cancer biology — Posted on 2017-07-09

1090 HiPiler: Visual Exploration Of Large Genome Interaction Matrices With Interactive Small Multiples

Lekschas, F.; Bach, B.; Kerpedjiev, P.; Gehlenborg, N.; Pfister, H.

10.1101/123588 — bioinformatics — Posted on 2017-07-09

1091 Cyanobacterial Growth on Municipal Wastewater Requires Low Temperatures

Korosh, T. C.; Dutcher, A.; Pfleger, B. F.; McMahon, K.

10.1101/161166 — microbiology — Posted on 2017-07-08

1092 Positive Feedback Between Contractile Ring Myosin and Ring-Directed Cortical Flow Drives Cytokinesis

Khaliullin, R.; Green, R.; Shi, L.; Berns, M.; Gomez-Cavazos, J. S.; Desai, A.; Oegema, K.

10.1101/161133 — cell biology — Posted on 2017-07-08

1093 AmoA-targeted polymerase chain reaction primers for the specific detection and quantification of comammox Nitrospira in the environment

Pjevac, P.; Schauberger, C.; Poghosyan, L.; Herbold, C. W.; van Kessel, M. A. H. J.; Daebeler, A.; Steinberger, M.; Jetten, M. S. M.; Lücker, S.; Wagner, M.; Daims, H.

10.1101/096891 — microbiology — Posted on 2017-07-08

1094 SMELL-S and SMELL-R: olfactory tests not influenced by odor-specific insensitivity or prior olfactory experience

Hsieh, J. W.; Keller, A.; Wong, M.; Jiang, R.-S.; Vosshall, L. B.

10.1101/161000 — neuroscience — Posted on 2017-07-08

1095 No cause for pause: new analyses of ramping and stepping dynamics in LIP (Rebuttal to Response to Reply to Comment on Latimer et al. 2015)

Latimer, K. W.; Huk, A. C.; Pillow, J. W.

10.1101/160994 — neuroscience — Posted on 2017-07-08

1096 Leg Length, Skull Circumference, And The Incidence Of Dementia In Latin America And China; A 10/66 Population-Based Cohort Study

Prince, M. J.; Acosta, D.; Guerra, M.; Huang, Y.; Jimenez-Velazquez, I. Z.; Llibre Rodriguez, J. J.; Salas, A.; Sosa, A. L.; Dewey, M. E.; Guerchet, M. M.; Liu, Z.; Llibre-Guerra, J. J.; Prina, M. A.

10.1101/140129 — epidemiology — Posted on 2017-07-08

1097 A random-matrix theory of the number sense

Hannagan, T.; Nieder, A.; Viswanathan, P.; Dehaene, S.

10.1101/160895 — neuroscience — Posted on 2017-07-08

1098 Nucleosomes and DNA methylation shape meiotic DSB frequency in Arabidopsis transposons and gene regulatory regions

Choi, K.; Zhao, X.; Lambing, C.; Underwood, C. J.; Hardcastle, T. J.; Serra, H.; Tock, A. J.; Ziolkowski, P. A.; Yelina, N. E.; Martienssen, R. A.; Henderson, I. R.

10.1101/160911 — genomics — Posted on 2017-07-08

1099 A large-scale genome-wide enrichment analysis identifies new trait-associated genes, pathways and tissues across 31 human phenotypes

Zhu, X.; Stephens, M.

10.1101/160770 — genomics — Posted on 2017-07-08

1100 Epigenetic activation of meiotic recombination in Arabidopsis centromeres via loss of H3K9me2 and non-CG DNA methylation

Underwood, C. J.; Choi, K.; Lambing, C.; Zhao, X.; Serra, H.; Borges, F.; Simorowski, J.; Ernst, E.; Jacob, Y.; Henderson, I. R.; Martienssen, R. A.

10.1101/160929 — genomics — Posted on 2017-07-08

1101 Procedures for enumerating and uniformly sampling transmission trees for a known phylogeny

Hall, M. D.

10.1101/160812 — evolutionary biology — Posted on 2017-07-08

1102 Pan-cancer analysis reveals complex tumor-specific alternative polyadenylation

Xue, Z.; Warren, R. L.; Gibb, E. A.; MacMillan, D.; Wong, J.; Chiu, R.; Hammond, S. A.; Ennis, C. A.; Hahn, A.; Reynolds, S.; Birol, I.

10.1101/160960 — genomics — Posted on 2017-07-08

1103 The genomic architecture of a rapid island radiation: mapping chromosomal rearrangements and recombination rate variation in Laupala

Blankers, T.; Oh, K. P.; Bombarely, A.; Shaw, K. L.

10.1101/160952 — evolutionary biology — Posted on 2017-07-08

1104 Gene isoforms as expression-based biomarkers predictive of drug response in vitro

Safikhani, Z.; Thu, K. L.; Silvester, J.; Smirnov, P.; Lupien, M.; Mak, T. W.; Cescon, D.; Haibe-Kains, B.

10.1101/160937 — bioinformatics — Posted on 2017-07-08

1105 Improving Designer Glycan Production in Escherichia coli through Model-Guided Metabolic Engineering

Wayman, J. A.; Glasscock, C.; Mansell, T.; DeLisa, M. P.; Varner, J.

10.1101/160853 — systems biology — Posted on 2017-07-08

1106 Versatile open software to quantify cardiomyocyte and cardiac muscle contraction in vitro and in vivo

Sala, L.; van Meer, B. J.; Tertoolen, L. G. J.; Bakkers, J.; Bellin, M.; Davis, R.; Denning, C.; Dieben, M. A. E.; Eschenhagen, T.; Giacomelli, E.; Grandela, C.; Hansen, A.; Holman, E. R.; Jongbloed, M. R. M.; Kamel, S. M.; Koopman, C. D.; Lachaud, Q.; Mannhardt, I.; Mol, M. P. H.; Orlova, V. V.; Passier, R.; Ribeiro, M. C.; Saleem, U.; Smith, G. L.; Mummery, C. L.; Burton, F. L.

10.1101/160754 — physiology — Posted on 2017-07-08

1107 Translational and HIF1α-dependent metabolic reprograming underpin oncometabolomeplasticity and synergy between oncogenic kinase inhibitors and biguanides.

Hulea, L.; Gravel, S.-P.; Morita, M.; Cargnello, M.; Uchenunu, O.; Im, Y. K.; McLaughlan, S.; Larsson, O.; Ohh, M.; Ferreira, T.; Greenwood, C.; Bridon, G.; Avizonis, D.; Ursini-Siegel, J.; St-Pierre, J.; Pollak, M.; Topisirovic, I.

10.1101/160879 — cancer biology — Posted on 2017-07-08

1108 The most developmentally truncated fishes show extensive Hox gene loss and miniaturized genomes

Malmstrom, M.; Britz, R.; Matschiner, M.; Torresen, O. K.; Hadiaty, R. K.; Yaakob, N.; Tan, H. H.; Jakobsen, K. S.; Salzburger, W.; Rüber, L.

10.1101/160168 — genomics — Posted on 2017-07-07

1109 A combined analysis of genetically correlated traits identifies 107 loci associated with intelligence

Hill, W. D.; Davies, G.; McIntosh, A. M.; Gale, C. R.; Deary, I. J.

10.1101/160291 — genetics — Posted on 2017-07-07

1110 Brain xQTL Map: Integrating The Genetic Architecture Of The Human Brain Transcriptome And Epigenome

Ng, B.; White, C. C.; Klein, H. U.; Sieberts, S. K.; McCabe, C.; Patrick, E.; Xu, J.; Yu, L.; Gaiteri, C.; Bennett, D. A.; Mostafavi, S.; De Jager, P. L.

10.1101/142927 — bioinformatics — Posted on 2017-07-07

1111 Early postnatal brain overgrowth and gene expression changes prefigure functional over-connectivity of the cortex in Chd8 haploinsufficient mice

Suetterlin, P.; Hurley, S.; Mohan, C.; Riegman, K. L. H.; Pagani, M.; Caruso, A.; Ellegood, J.; Galbusera, A.; Crespo-Enriquez, I.; Michetti, C.; Ellingford, R.; Brock, O.; Delogu, A.; Francis-West, P.; Lerch, J. P.; Scattoni, M. L.; Gozzi, A.; Fernandes, C.; Basson, A.

10.1101/143552 — neuroscience — Posted on 2017-07-07

1112 HyperTRIBE identifies many more in vivo targets of a RNA-binding protein than TRIBE

Xu, W.; Rahman, R.; Rosbash, M.

10.1101/156828 — molecular biology — Posted on 2017-07-07

1113 Fractional Field Theory Approach to Protein Folding Dynamics

Nasrolahpour, H.

10.1101/153999 — biophysics — Posted on 2017-07-07

1114 Separable Fully Connected Layers Improve Deep Learning Models For Genomics

Alexandari, A. M.; Shrikumar, A.; Kundaje, A.

10.1101/146431 — bioinformatics — Posted on 2017-07-07

1115 A spiral attractor network drives rhythmic locomotion

Bruno, A. M.; Frost, W. N.; Humphries, M. D.

10.1101/104562 — neuroscience — Posted on 2017-07-07

1116 Learning of Active Binocular Vision in a Biomechanical Model of the Oculomotor System

Klimmasch, L.; Lelais, A.; Lichtenstein, A.; Shi, B. E.; Triesch, J.

10.1101/160721 — neuroscience — Posted on 2017-07-07

1117 Rapid, parallel identification of pathways for catabolism of lignin-derived aromatic compounds

Cecil, J. H.; Michener, J.

10.1101/160747 — microbiology — Posted on 2017-07-07

1118 New mutations, old statistical challenges

Barrett, J. C.; Buxbaum, J.; Cutler, D.; Daly, M.; Devlin, B.; Gratten, J.; Hurles, M. E.; Kosmicki, J. A.; Lander, E. S.; MacArthur, D. G.; Neale, B. M.; Roeder, K.; Visscher, P. M.; Wray, N. R.

10.1101/115964 — genetics — Posted on 2017-07-07

1119 A broad role for YBX1 in defining the small non-coding RNA composition of exosomes

Shurtleff, M. J.; Yao, J.; Qin, Y.; Nottingham, R. M.; Temoche-Diaz, M.; Schekman, R.; Lambowitz, A.

10.1101/160556 — cell biology — Posted on 2017-07-07

1120 Pavement cells and the topology puzzle

Carter, R.; Sanchez-Corrales, Y. E.; Grieneisen, V. A.; Maree, A. F. M.

10.1101/160762 — biophysics — Posted on 2017-07-07

1121 Combining multiple functional annotation tools increases completeness of metabolic annotation

Griesemer, M.; Kimbrel, J. A.; Zhou, C. E.; Navid, A.; D'haeseleer, P.

10.1101/160887 — bioinformatics — Posted on 2017-07-07

1122 Integrated time-course omics analysis distinguishes immediate therapeutic response from acquired resistance

Stein-O'Brien, G.; Kagohara, L. T.; Li, S.; Thakar, M.; Ranaweera, R.; Ozawa, H.; Cheng, H.; Considine, M.; Favorov, A.; Danilova, L.; Califano, J. A.; Izumchenko, E.; Gaykalova, D. A.; Chung, C. H.; Fertig, E. J.

10.1101/136564 — systems biology — Posted on 2017-07-07

1123 Predicting serious rare adverse reactions of novel chemicals

Poleksic, A.; Xie, L.

10.1101/160473 — pharmacology and toxicology — Posted on 2017-07-07

1124 Imaging and dynamic causal modelling reveal brain-wide changes in effective connectivity and synaptic dynamics during epileptic seizures.

Rosch, R. E.; Hunter, P.; Baldeweg, T.; Friston, K.; Meyer, M.

10.1101/160259 — neuroscience — Posted on 2017-07-07

1125 A common neural network among state, trait, and pathological anxiety from whole-brain functional connectivity

Takagi, Y.; Sakai, Y.; Abe, Y.; Nishida, S.; Harrison, B. J.; Martinez-Zalacain, I.; Soriano-Mas, C.; Narumoto, J.; Tanaka, S. C.

10.1101/158055 — neuroscience — Posted on 2017-07-07

1126 Toward leveraging big data in human functional connectomics: Generalization of brain graphs across scanners, sessions, and paradigms

Cao, H.; McEwen, S.; Bearden, C.; Addington, J.; Goodyear, B.; Cadenhead, K.; Mirzakhanian, H.; Cornblatt, B.; Olvet, D.; Mathalon, D.; McGlashan, T.; Perkins, D.; Belger, A.; Seidman, L.; Thermenos, H.; Tsuang, M.; van Erp, T.; Walker, E.; Hamann, S.; Woods, S.; Cannon, T.

10.1101/160440 — neuroscience — Posted on 2017-07-07

1127 A Novel, Fast and Efficient Single-Sensor Automatic Sleep-Stage Classification Based on Complementary Cross-Frequency Coupling Estimates

Dimitriadis, S. I.; Salis, C.; Linden, D. E.

10.1101/160655 — neuroscience — Posted on 2017-07-07

1128 Whole Genome Sequencing in Psychiatric Disorders: the WGSPD Consortium

Sanders, S. J.; Neale, B. M.; Huang, H.; Werling, D. M.; An, J.-Y.; Dong, S.; - Whole Genome Sequencing for Psychiatric Disorders, ; Abecasis, G.; Arguello, P. A.; Blangero, J.; Boehnke, M.; Daly, M.; Eggan, K.; Geschwind, D. H.; Glahn, D.; Goldstein, D. B.; Gur, R. E.; Handsaker, R. E.; McCarroll, S. A.; Ophoff, R. A.; Palotie, A.; Pato, C.; Sabatti, C.; State, M. W.; Willsey, A. J.; Hyman, S. E.; Addington, A.; Lehner, T.; Freimer, N. B.

10.1101/160499 — genomics — Posted on 2017-07-07

1129 Assessing Runs of Homozygosity: A comparison of SNP Array and Whole Genome Sequence low coverage data

Ceballos, F. C.; Hazelhurst, S.; Ramsay, M.

10.1101/160705 — genomics — Posted on 2017-07-07

1130 Ancestrally Shared Regenerative Mechanisms Across the Metazoa: A Transcriptomic Case Study in the Demosponge Halisarca caerulea

Kenny, N. J.; de Goeij, J. M.; de Bakker, D. M.; Whalen, C. G.; Berezikov, E.; Riesgo, A.

10.1101/160689 — genomics — Posted on 2017-07-07

1131 A combined analysis of genetically correlated traits identifies 107 loci associated with intelligence

Hill, W. D.; Davies, G.; McIntosh, A. M.; Gale, C. R.; Deary, I. J.

10.1101/160291 — genetics — Posted on 2017-07-07

1132 Divergence times in demosponges (Porifera): firstinsights from new mitogenomes and the inclusion offossils in a birth-death clock model

Schuster, A.; Vargas, S.; Knapp, I.; Pomponi, S. A.; Toonen, R. J.; Erpenbeck, D.; Woerheide, G.

10.1101/159806 — evolutionary biology — Posted on 2017-07-07

1133 Solution structure of sperm lysin yields novel insights into molecular dynamics of rapid protein evolution

Wilburn, D. B.; Tuttle, L. M.; Klevit, R. E.; Swanson, W. J.

10.1101/160580 — evolutionary biology — Posted on 2017-07-07

1134 Intraspecific variation in indirect plant-soil feedbacks as a driver of a wetland plant invasion

Allen, W. J.; Meyerson, L. A.; Flick, A. J.; Cronin, J. T.

10.1101/160523 — ecology — Posted on 2017-07-07

1135 Measuring the gut microbiome in birds: comparison of faecal and cloacal sampling

Videvall, E.; Strandh, M.; Engelbrecht, A.; Cloete, S.; Cornwallis, C. K.

10.1101/160564 — ecology — Posted on 2017-07-07

1136 Cortical area and subcortical volume mediate the effect of parental education and adverse experiences on cognitive performance in youth

Mehta, C. M.; Malins, J. G.; Noble, K. G.; Gruen, J. R.

10.1101/160424 — developmental biology — Posted on 2017-07-07

1137 Axe: rapid, competitive sequence read demultiplexing using a trie

Murray, K. D.; Borevitz, J. O.

10.1101/160606 — bioinformatics — Posted on 2017-07-07

1138 Completing bacterial genome assemblies with multiplex MinION sequencing

Wick, R. R.; Judd, L. M.; Gorrie, C. L.; Holt, K. E.

10.1101/160614 — bioinformatics — Posted on 2017-07-07

1139 Flexible Analysis of Electronic Medical Record Data with Composite Mixture Models

Mayhew, M. B.; Petersen, B. K.; Sales, A. P.; Greene, J. D.; Liu, V. X.; Wasson, T. S.

10.1101/160465 — bioinformatics — Posted on 2017-07-07

1140 Association of Vancomycin with Lipid Vesicles

Hu, X.; Tam, K. Y.

10.1101/160572 — biochemistry — Posted on 2017-07-07

1141 Bayesian inference and simulation approaches improve the assessment of Elo-scores in the analysis of social behaviour

Goffe, A. S.; Fischer, J.; Sennhenn-Reulen, H.

10.1101/160671 — animal behavior and cognition — Posted on 2017-07-07

1142 Variational Bayesian parameter estimation techniques for the general linear model

Starke, L.; Ostwald, D.

10.1101/077461 — neuroscience — Posted on 2017-07-07

1143 Control of Hox transcription factor concentration and cell-to-cell variability by an auto-regulatory switch

Papadopoulos, D. K.; Skouloudaki, K.; Engstrom, Y.; Terenius, L.; Rigler, R.; Zechner, C.; Vukojevic, V.; Tomancak, P.

10.1101/115220 — genetics — Posted on 2017-07-07

1144 Cell-free and in vivo characterization of Lux, Las, and Rpa quorum activation systems in E. coli

Halleran, A.; Murray, R. M.

10.1101/159988 — synthetic biology — Posted on 2017-07-07

1145 An aggrecan fragment drives osteoarthritis pain through Toll-like receptor 2

Miller, R.; Miller, R. J.; Ishihara, S.; Tran, P. B.; Golub, S. B.; Last, K.; Fosang, A. J.; Malfait, A.-M.

10.1101/160432 — neuroscience — Posted on 2017-07-07

1146 NMDA-receptor antibodies alter cortical microcircuit dynamics

Rosch, R. E.; Wright, S.; Cooray, G.; Papadopoulou, M.; Goyal, S.; Lim, M.; Vincent, A.; Upton, L. A.; Baldeweg, T.; Friston, K. J.

10.1101/160309 — neuroscience — Posted on 2017-07-07

1147 Orb-web spider color polymorphism through the eyes of multiple prey and predators

Goncalves, N. X.; Gawryszewski, F. M.

10.1101/160341 — animal behavior and cognition — Posted on 2017-07-07

1148 Integrated time-course omics analysis distinguishes immediate therapeutic response from acquired resistance

10.1101/136564 — systems biology — Posted on 2017-07-06

1149 Enhanced skeletal muscle ribosome biogenesis, yet attenuated mTORC1 and ribosome biogenesis-related signalling, with concurrent versus single-mode resistance training

Fyfe, J. J.; Bishop, D. J.; Bartlett, J. D.; Hanson, E. D.; Anderson, M. J.; Garnham, A. P.; Stepto, N. K.

10.1101/115212 — physiology — Posted on 2017-07-06

1150 Nutrient dynamics and stream order influence microbial community patterns along a 2914 km transect of the Mississippi River

Henson, M. W.; Hanssen, J.; Spooner, G.; Flemming, P.; Pukonen, M.; Stahr, F.; Thrash, J. C.

10.1101/091512 — microbiology — Posted on 2017-07-06

1151 Single nucleus analysis of the chromatin landscape in mouse forebrain development

Preissl, S.; Fang, R.; Zhao, Y.; Raviram, R.; Zhang, Y.; Sos, B. C.; Huang, H.; Gorkin, D. U.; Afzal, V.; Dickel, D. E.; Kuan, S.; Visel, A.; Pennacchio, L. A.; Zhang, K.; Ren, B.

10.1101/159137 — genomics — Posted on 2017-07-06

1152 Salicylic acid perturbs small RNA-gibberellin regulatory network in immune response of potato to Potato virus Y infection and renders plants tolerant to the pathogen

Kriznik, M.; Petek, M.; Dobnik, D.; Ramsak, Z.; Baebler, S.; Pollmann, S.; Kreuze, J.; Zel, J.; Gruden, K.

10.1101/130757 — plant biology — Posted on 2017-07-06

1153 The Neurocognitive Architecture of Individual Differences in Math Anxiety in Typical Children

Hartwright, C. E.; Looi, C. Y.; Sella, F.; Inuggi, A.; Santos, F. H.; Gonzalez-Salinas, C.; Garcia Santos, J. M.; Cohen Kadosh, R.; Fuentes, L. J.

10.1101/160234 — neuroscience — Posted on 2017-07-06

1154 Disorder and the neural representation of complex odors: smelling in the real world

Krishnamurthy, K.; Hermundstad, A. M.; Mora, T.; Walczak, A. M.; Balasubramanian, V.

10.1101/160382 — neuroscience — Posted on 2017-07-06

1155 Interhemispheric specialization in the rodent hippocampus: Implications for storage and retrieval of short- and long-term memories

Jordan, J. T.; Pytte, C. L.

10.1101/150193 — neuroscience — Posted on 2017-07-06

1156 Classifiers with limited connectivity

Kushnir, L.; Fusi, S.

10.1101/157289 — neuroscience — Posted on 2017-07-06

1157 Cortical neural activity predicts sensory acuity under optogenetic manipulation.

Briguglio, J.; Aizenberg, M.; Balasubramanian, V.; Geffen, M. N.

10.1101/119453 — neuroscience — Posted on 2017-07-06

1158 Adaptive gain control in the human dorsal anterior cingulate cortex

Li, V.; Michael, E.; Balaguer, J.; Herce Castanon, S.; Summerfield, C.

10.1101/160143 — neuroscience — Posted on 2017-07-06

1159 Genetic variation and gene expression across multiple tissues and developmental stages in a non-human primate

Jasinska, A. J.; Zelaya, I.; Service, S. K.; Peterson, C.; Cantor, R. M.; Choi, O.-W.; DeYoung, J.; Eskin, E.; Fairbanks, L. A.; Fears, S.; Furterer, A.; Huang, Y. S.; Ramensky, V.; Schmitt, C. A.; Svardal, H.; Jorgensen, M. J.; Kaplan, J. R.; Villar, D.; Aken, B. L.; Flicek, P.; Nag, R.; Wong, E. S.; Blangero, J.; Dyer, T. D.; Bogomolov, M.; Benjamini, Y.; Weinstock, G. M.; Dewar, K.; Sabatti, C.; Wilson, R. K.; Jentsch, J. D.; Warren, W.; Coppola, G.; Woods, R. P.; Freimer, N. B.

10.1101/092874 — genetics — Posted on 2017-07-06

1160 High Resolution Mitochondrial DNA Analysis Sheds Light On Human Diversity, Cultural Interactions And Population Mobility In Northwestern Amazonia

Arias, L.; Barbieri, C.; Barreto, G.; Stoneking, M.; Pakendorf, B.

10.1101/160218 — evolutionary biology — Posted on 2017-07-06

1161 Aging As A Defense Strategy Against Parasites

Chin, R. Y.

10.1101/143362 — evolutionary biology — Posted on 2017-07-06

1162 Robust and Bright Genetically Encoded Fluorescent Markers for Highlighting Structures and Compartments in Mammalian Cells

Chertkova, A. O.; Mastop, M.; Postma, M.; van Bommel, N.; van der Niet, S.; Batenburg, K. L.; Joosen, L.; Gadella, T. W. J.; Okada, Y.; Goedhart, J.

10.1101/160374 — cell biology — Posted on 2017-07-06

1163 Toward A Scalable Exploratory Framework for Complex High-Dimensional Phenomics Data

Kamruzzaman, M.; Kalyanaraman, A.; Krishnamoorthy, B.; Schnable, P. S.

10.1101/159954 — bioinformatics — Posted on 2017-07-06

1164 GROOLS: reactive graph reasoning for genome annotation through biological processes

Mercier, J.; Josso, A.; Medigue, C.; Vallenet, D.

10.1101/117994 — bioinformatics — Posted on 2017-07-06

1165 PIVOT: Platform for Interactive Analysis and Visualization of Transcriptomics Data

Zhu, Q.; Fisher, S. A.; Dueck, H.; Middleton, S.; Khaladkar, M.; Kim, J.

10.1101/053348 — bioinformatics — Posted on 2017-07-06

1166 Classifying smartphone-based accelerometer data to obtain validated measures of subject activity status, step count, and gait speed

Kwon, Y. J.; Aung, T.; Synovec, S. M.; Oberle, A. D.; Rye-Hanton, C.; Whittington, J.; Goulding, E. H.; Witbrodt, B. C.; B, S.; Schenk, A. K.

10.1101/160317 — bioengineering — Posted on 2017-07-06

1167 Invasion and migration of self-limiting gene drives: a comparative analysis

Dhole, S.; Vella, M. R.; Lloyd, A. L.; Gould, F.

10.1101/159855 — bioengineering — Posted on 2017-07-06

1168 Enhanced proofreading governs CRISPR-Cas9 targeting accuracy

Chen, J. S.; Dagdas, Y. S.; Kleinstiver, B. P.; Welch, M. M.; Harrington, L. B.; Sternberg, S. H.; Joung, J. K.; Yildiz, A.; Doudna, J. A.

10.1101/160036 — biochemistry — Posted on 2017-07-06

1169 In vivo calcium imaging visualizes peripheral neuron sensitization in murine osteoarthritis

Miller, R.; Kim, Y. S.; Tran, P. B.; Dong, X.; Miller, R. J.; Malfait, A.-M.

10.1101/160416 — neuroscience — Posted on 2017-07-06

1170 Building a high-resolution in vivo minimum deformation average model of the human hippocampus

Jacobsen, N.; Munk, J. B.; Plocharski, M.; Ostergaard, L. R.; Marstaller, L.; Reutens, D.; Barth, M.; Janke, A.; Bollmann, S.

10.1101/160176 — neuroscience — Posted on 2017-07-06

1171 SLFL Genes Participate in the Ubiquitination and Degradation of S-RNase in Self-Compatible Chinese Peach

Chen, Q.; Meng, D.; Li, W.; Gu, Z.; Yuan, H.; Duan, X.; Yang, Q.; Li, Y.; Li, T.

10.1101/160267 — molecular biology — Posted on 2017-07-06

1172 Enhanced neuronal regeneration in the CAST/Ei mouse strain is linked to expression of differentiation markers after injury

Lisi, V.; Singh, B.; Giroux, M.; Guzman, E.; Painter, M. W.; Cheng, Y.-C.; Huebner, E. W.; Coppola, G.; Costigan, M.; Woolf, C. J.; Kosik, K. S.

10.1101/160366 — molecular biology — Posted on 2017-07-06

1173 Diverse Streptococcus pneumoniae strains drive a MAIT cell response through MR1-dependent and cytokine-driven pathways

Kurioka, A.; van Wilgenburg, B.; Javan, R. R.; Hoyle, R.; van Tonder, A. J.; Harrold, C. L.; Leng, T.; Phalora, P.; Howson, L. J.; Shepherd, D.; Cerundolo, V.; Brueggemann, A. B.; Klenerman, P.

10.1101/158204 — immunology — Posted on 2017-07-06

1174 Psychosis and the level of mood incongruence in Bipolar Disorder are related to genetic liability for Schizophrenia

Allardyce, J.; Leonenko, G.; Hamshere, M.; Pardinas, A.; Forty, L.; Knott, S.; Gordon-Smith, K.; Porteous, D.; Hayward, C.; Di Florio, A.; Jones, L.; McIntosh, A.; Owen, M. J.; Holmans, P.; Walters, J.; Craddock, N.; Jones, I.; O'Donovan, M. C.; Escott-Price, V.

10.1101/160119 — genetics — Posted on 2017-07-06

1175 Distinctive desmoplastic 3D morphology associated with BRAFV600E in papillary thyroid cancers

Tarabichi, M.; Antoniou, A.; Le Pennec, S.; Gacquer, D.; de Saint Aubain, N.; Craciun, L.; Cielen, T.; Laios, I.; Larsimont, D.; Andry, G.; Dumont, J. E.; Maenhaut, C.; Detours, V.

10.1101/160127 — cancer biology — Posted on 2017-07-06

1176 Mechanics of Hydra Detachment from Subrates: The Role of Substrate Rigidity and Starvation

Khetan, N.; Maheshwari, S.; Athale, C. A.

10.1101/160028 — biophysics — Posted on 2017-07-06

1177 Genotype, nitrogen and herbivory shape plant defense: the case of a vitamin-enriched maize

Ardanuy, A.; Pastor, V.; Glauser, G.; Christou, P.; Turlings, T.; Albajes, R.

10.1101/160333 — plant biology — Posted on 2017-07-06

1178 Recurrent excitation between motoneurones propagates across segments and is purely glutamatergic

Bhumbra, G. S.; Beato, M.

10.1101/160150 — neuroscience — Posted on 2017-07-06

1179 Versatile approach for functional analysis of human proteins and efficient stable cell line generation using FLP-mediated recombination system

Szczesny, R. J.; Kowalska, K.; Klosowska-Kosicka, K.; Chlebowski, A.; Owczarek, E. P.; Warkocki, Z.; Kulinski, T. M.; Adamska, D.; Affek, K.; Jedroszkowiak, A.; Kotrys, A. V.; Cysewski, D.; Tomecki, R.; Krawczyk, P. S.; Borowski, L. S.; Dziembowski, A.

10.1101/160101 — molecular biology — Posted on 2017-07-06

1180 The most developmentally truncated fishes show extensive Hox gene loss and miniaturized genomes

Malmstrom, M.; Britz, R.; Matschiner, M.; Torresen, O. K.; Hadiaty, R. K.; Yaakob, N.; Tan, H. H.; Jakobsen, K. S.; Salzburger, W.; Ruber, L.

10.1101/160168 — genomics — Posted on 2017-07-06

1181 JASPAR RESTful API: accessing JASPAR data from any programming language

Khan, A.; Mathelier, A.

10.1101/160184 — bioinformatics — Posted on 2017-07-06

1182 Linking Normative Models of Natural Tasks to Descriptive Models of Neural Response

Jaini, P.; Burge, J.

10.1101/158741 — neuroscience — Posted on 2017-07-06

1183 A reanalysis of Schaefer et al. does not indicate extensive CRISPR/Cas9 mediated off-target editing events

Lescarbeau, R. M.; Murray, B. A.; Barnes, T. M.; Bermingham, N.

10.1101/159608 — genomics — Posted on 2017-07-06

1184 Quantitative RNAseq Meta Analysis Of Alternative Exon Usage In C. elegans

Tourasse, N. J.; Millet, J. R. M.; Dupuy, D.

10.1101/134718 — genomics — Posted on 2017-07-06

1185 Unleashing meiotic crossovers in hybrid plants

Fernandes, J. B.; Seguela-Arnaud, M.; Larcheveque, C.; Lloyd, A. H.; Mercier, R.

10.1101/159640 — genetics — Posted on 2017-07-06

1186 Despite reproductive interference, the net outcome of reproductive interactions among spider mite species is not necessarily costly

Clemente, S. H.; Santos, I.; Ponce, A. R.; Rodrigues, L. R.; Varela, S. A. M.; Magalhaes, S.

10.1101/113274 — ecology — Posted on 2017-07-06

1187 Metabolic process of raffinose family oligosacharrides during cold stress and recovery in cucumber leaves

Lu, M.; Zhang, Z.; Xu, J.; Cao, W.; Miao, M.

10.1101/160051 — plant biology — Posted on 2017-07-06

1188 Common Piezo1 allele in African populations causes xerocytosis and attenuates Plasmodium infection

Ma, S.; Cahalan, S.; Lohia, R.; LaMonte, G.; Zeng, W.; Murthy, S.; Paytas, E.; Grubaugh, N. D.; Gamini, R.; Berry, L.; Lukacs, V.; Whitwam, T.; Loud, M.; Su, A. I.; Andersen, K. G.; Winzeler, E. A.; Honore, E.; Wengelnik, K.; Patapoutian, A.

10.1101/159830 — physiology — Posted on 2017-07-06

1189 Non-linear Auto-Regressive Models for Cross-Frequency Coupling in Neural Time Series

Dupre la Tour, T.; Tallot, L.; Grabot, L.; Doyere, V.; van Wassenhove, V.; Grenier, Y.; Gramfort, A.

10.1101/159731 — neuroscience — Posted on 2017-07-06

1190 Reactive Oxygen Species-Dependent Essential Genes in Salmonella Typhimurium

Karash, S.; Kwon, Y. M.

10.1101/159921 — microbiology — Posted on 2017-07-06

1191 Massive crossover elevation via combination of HEI10 and recq4a recq4b during Arabidopsis meiosis

Serra, H.; Lambing, C.; Griffin, C. H.; Topp, S. D.; Seguela-Arnaud, M.; Fernandes, J.; Mercier, R.; Henderson, I. R.

10.1101/159764 — genetics — Posted on 2017-07-06

1192 Using Structural Equation Modeling to Jointly Estimate Maternal and Foetal Effects on Birthweight in the UK Biobank

Warrington, N.; Freathy, R.; Neale, M. C.; Evans, D. M.

10.1101/160044 — genetics — Posted on 2017-07-06

1193 FIGL1 and its novel partner FLIP form a conserved complex that regulates homologous recombination.

Fernandes, J.; Duhamel, M.; Seguela-Arnaud, M.; Froger, N.; Girard, C.; Choinard, S.; De Winne, N.; De Jaeger, G.; Gevaert, K.; Guerois, R.; Kumar, R.; Mercier, R.

10.1101/159657 — genetics — Posted on 2017-07-06

1194 The global impact of Wolbachia on mitochondrial diversity and evolution

Cariou, M.; Duret, L.; Charlat, S.

10.1101/160226 — evolutionary biology — Posted on 2017-07-06

1195 Repeated co-option of a conserved gene regulatory module underpins the evolution of the crustacean carapace, insect wings and other flat outgrowths

Shiga, Y.; Kato, Y.; Aragane-Nomura, Y.; Haraguchi, T.; Saridaki, T.; Watanabe, H.; Iguchi, T.; Yamagata, H.; Averof, M.

10.1101/160010 — developmental biology — Posted on 2017-07-06

1196 Ponatinib shows potent antitumor activity in small cell carcinoma of the ovary hypercalcemic type (SCCOHT) through multi-kinase inhibition

Lang, J. D.; Hendricks, W. P. D.; Yin, H.; Kiefer, J.; Ramos, P.; Sharma, R.; Pirrotte, P.; Raupach, E. A.; Sereduk, C.; Tang, N.; Liang, W. S.; Washington, M.; Facista, S. J.; Zismann, V. L.; Cousins, E. M.; Major, M. B.; Wang, Y.; Karnezis, A. N.; Orlando, K. A.; Sekulic, A.; Hass, R.; Vanderhyden, B. C.; Praveen, K.; Weissman, B. E.; Huntsman, D. G.; Trent, J. M.

10.1101/159905 — cancer biology — Posted on 2017-07-06

1197 Dissecting targeted therapy resistance: Integrating models to quantify environment mediated drug resistance

Picco, N.; Sahai, E.; Maini, P.; Anderson, A.

10.1101/156547 — cancer biology — Posted on 2017-07-06

1198 Uncovering genomic trajectories with heterogeneous genetic and environmental backgrounds across single-cells and populations

Campbell, K.; Yau, C.

10.1101/159913 — bioinformatics — Posted on 2017-07-06

1199 RNA Transcriptome Mapping with GraphMap

Krizanovic, K.; Sovic, I.; Krpelnik, I.; Sikic, M.

10.1101/160085 — bioinformatics — Posted on 2017-07-06

1200 High-Throughput Characterization of Protein-Protein Interactions by Reprogramming Yeast Mating

Younger, D.; Berger, S.; Baker, D.; Klavins, E.

10.1101/122143 — synthetic biology — Posted on 2017-07-05

1201 Cortical circuits implement optimal context integration

Iyer, R.; Mihalas, S.

10.1101/158360 — neuroscience — Posted on 2017-07-05

1202 Alterations in striato-thalamo-pallidal intrinsic functional connectivity as a prodrome of Parkinson’s disease

Dayan, E.; Browner, N.

10.1101/140830 — neuroscience — Posted on 2017-07-05

1203 Evolutionary genetic analysis uncovers multiple sympatric species with distinct habitat preferences and antibiotic resistance phenotypes among aquaticStenotrophomonas maltophilia complex isolates

Ochoa-Sanchez, L. E.; Vinuesa, P.

10.1101/138990 — microbiology — Posted on 2017-07-05

1204 Gated Coupling of Dopamine and Neuropeptide Signaling Underlies Perceptual Processing of Appetitive Odors in Drosophila

Pu, Y.; Masserant Palombo, M. M.; Zhang, Y.; Shen, P.

10.1101/159897 — neuroscience — Posted on 2017-07-05

1205 Effects of autozygosity and schizophrenia polygenic risk on cognitive and brain developmental trajectories

Cordova-Palomera, A.; Kaufmann, T.; Bettella, F.; Wang, Y.; Doan, N. T.; van der Meer, D.; Alnaes, D.; Rokicki, J.; Moberget, T.; Sonderby, I. E.; Andreassen, O. A.; Westlye, L. T.

10.1101/159939 — neuroscience — Posted on 2017-07-05

1206 CRF1 receptor-dependent increases in irritability-like behavior during abstinence from chronic intermittent ethanol vapor exposure

Kimbrough, A.; de Guglielmo, G.; Kononoff, J.; Kallupi, M.; Zorrilla, E. P.; George, O.

10.1101/159871 — neuroscience — Posted on 2017-07-05

1207 Dynamics of venom composition across a complex life cycle

Columbus-Shenkar, Y. Y.; Sachkova, M. Y.; Fridrich, A.; Modepalli, V.; Sunagar, K.; Moran, Y.

10.1101/159889 — evolutionary biology — Posted on 2017-07-05

1208 Toward A Scalable Exploratory Framework for Complex High-Dimensional Phenomics Data

Kamruzzaman, M.; Kalyanaraman, A.; Krishnamoorthy, B.; Schnable, P. S.

10.1101/159954 — bioinformatics — Posted on 2017-07-05

1209 Invasion and migration of self-limiting gene drives: a comparative analysis

Dhole, S.; Vella, M. R.; Lloyd, A. L.; Gould, F.

10.1101/159855 — bioengineering — Posted on 2017-07-05

1210 Developing a 670k genotyping array to tag ~2M SNPs across 24 horse breeds

Schaefer, R. J.; Schubert, M.; Bailey, E.; Bannasch, D. L.; Barrey, E.; Kahila Bar-Gal, G.; Brem, G.; Brooks, S. A.; Distl, O.; Fries, R.; Finno, C. J.; Gerber, V.; Haase, B.; Jagannathan, V.; Kalbfleisch, T.; Leeb, T.; Lindgren, G.; Susana Lopes, M.; Mach, N.; da Camara Machado, A.; MacLeod, J. N.; McCoy, A.; Metzger, J.; Penedo, C.; Polani, S.; Rieder, S.; Tammen, I.; Tetens, J.; Thaller, G.; Verini-Supplizi, A.; Wade, C. M.; Wallner, B.; Orlando, L.; Mickelson, J. R.; McCue, M. E.

10.1101/112979 — genomics — Posted on 2017-07-05

1211 Despite egg-adaptive mutations, the 2012-13 H3N2 influenza vaccine induced comparable antibody titers to the intended strain

Cobey, S.; Parkhouse, K.; Chambers, B. S.; Ertl, H. C.; Schmader, K. E.; Halpin, R. A.; Lin, X.; Stockwell, T. B.; Das, S. R.; Landon, E.; Tesic, V.; Youngster, I.; Pinsky, B.; Wentworth, D. E.; Hensley, S. E.; Grad, Y. H.

10.1101/158550 — epidemiology — Posted on 2017-07-05

1212 Increased risk of many early-life diseases after surgical removal of adenoids and tonsils in childhood

Byars, S. G.; Stearns, S. C.; Boomsma, J. J.

10.1101/158691 — epidemiology — Posted on 2017-07-05

1213 Phenology supports the eco-environmental hypothesis for Ebola spillover events

Wollenberg Valero, K. C.; Isokpehi, R.; Douglas, N. E.; Sivasundaram, S.; Johnson, B.; Wootson, K.; McGill, A.

10.1101/158568 — epidemiology — Posted on 2017-07-05

1214 Improving the accuracy of two-sample summary data Mendelian randomization: moving beyond the NOME assumption

Bowden, J.; Del Greco M, F.; Minelli, C.; Lawlor, D.; Sheehan, N.; Thompson, J.; Davey Smith, G.

10.1101/159442 — epidemiology — Posted on 2017-07-05

1215 Activation and desensitization mechanism of AMPA receptor-TARP complex by cryo-EM

Chen, S.; Zhao, Y.; Wang, Y. S.; Shekhar, M.; Tajkhorshid, E.; Gouaux, E.

10.1101/158402 — biophysics — Posted on 2017-07-05

1216 Privacy-preserving generative deep neural networks support clinical data sharing

Beaulieu-Jones, B. K.; Wu, Z. S.; Williams, C.; Greene, C. S.

10.1101/159756 — bioinformatics — Posted on 2017-07-05

1217 Striatal cholinergic receptor activation causes a rapid, selective, & state-dependent rise in corticostriatal β activity.

Pittman-Polletta, B. R.; Quach, A.; Mohammed, A. I.; Romano, M.; Kondabolou, K.; Kopell, N. J.; Han, X.; McCarthy, M. M.

10.1101/148551 — neuroscience — Posted on 2017-07-05

1218 Neurocalcin acts in a clock- and light-modulated dopaminergic pathway to promote night sleep in Drosophila

Chen, K.-F.; Lamaze, A.; Kratschmer, P.; Jepson, J. E. C.

10.1101/159772 — neuroscience — Posted on 2017-07-05

1219 Characterizing and interpreting the influence of internal variables on sensory activity

Lange, R. D.; Haefner, R. M.

10.1101/114439 — neuroscience — Posted on 2017-07-05

1220 "Unexpected mutations after CRISPR-Cas9 editing in vivo" are most likely pre-existing sequence variants and not nuclease-induced mutations

Lareau, C.; Clement, K.; Hsu, J. Y.; Pattanayak, V.; Joung, J. K.; Aryee, M. J.; Pinello, L.

10.1101/159707 — molecular biology — Posted on 2017-07-05

1221 Gene family information facilitates variant interpretation and identification of disease-associated genes

Lal, D.; May, P.; Samocha, K.; Kosmicki, J.; Robinson, E. B.; Moller, R.; Krause, R.; Nuernberg, P.; Weckhuysen, S.; De Jonghe, P.; Guerrini, R.; Neupert, L.-M.; Du, J.; Perez-Palma, E.; Marini, C.; - EuroEpinomics-RES Consortium, ; Ware, J.; Kurki, M.; Gormley, P.; Tang, S.; Wu, S.; Biskup, S.; Poduri, A.; Neubauer, B.; Koeleman, B.; Helbig, K.; Weber, Y.; Helbig, I.; Majithia, A.; Palotie, A.; Daly, M. J.

10.1101/159780 — genetics — Posted on 2017-07-05

1222 Abelson tyrosine-protein kinase 2 Regulates Myoblast Proliferation and Controls Muscle Fiber Length

Burden, S. J.; Lee, J. K.

10.1101/159822 — developmental biology — Posted on 2017-07-05

1223 Nuclear androgen receptor regulates testes organization and oocyte maturation in zebrafish

Crowder, C. M.; Lassiter, C. S.; Gorelick, D. A.

10.1101/159848 — developmental biology — Posted on 2017-07-05

1224 Single-cell absolute contact probability detection reveals that chromosomes are organized by modulated stochasticity

Cattoni, D. I.; Cardozo Gizzi, A. M.; Georgieva, M.; Di Stefano, M.; Valeri, A.; Chamousset, D.; Houbron, C.; Dejardin, S.; Fiche, J.-B.; Marti-Renom, M. A.; Bantignies, F.; Cavalli, G.; Nollmann, M.

10.1101/159814 — biophysics — Posted on 2017-07-05

1225 riboSeed: leveraging prokaryotic genomic architecture to assemble across ribosomal regions

Waters, N. R.; Abram, F.; Brennan, F.; Holmes, A.; Pritchard, L.

10.1101/159798 — bioinformatics — Posted on 2017-07-05

1226 Identification of Animal Behavioral Strategies by Inverse Reinforcement Learning

Yamaguchi, S.; Naoki, H.; Ikeda, M.; Tsukada, Y.; Nakano, S.; Mori, I.; Ishii, S.

10.1101/129007 — neuroscience — Posted on 2017-07-05

1227 Mobility as the purpose of postural control

Le Mouel, C.; Brette, R.

10.1101/110932 — neuroscience — Posted on 2017-07-05

1228 Oblique light-sheet tomography: fast and high resolution volumetric imaging of mouse brains

Narasimhan, A.; Umadevi Venkataraju, K.; Mizrachi, J.; Albeanu, D. F.; Osten, P.

10.1101/132423 — neuroscience — Posted on 2017-07-05

1229 Detecting Long-term Balancing Selection using Allele Frequency Correlation

Siewert, K. M.; Voight, B. F.

10.1101/112870 — evolutionary biology — Posted on 2017-07-05

1230 Software Application Profile: mrrobust - A Tool For Performing Two-Sample Summary Mendelian Randomization Analyses

Spiller, W.; Davies, N. M.; Palmer, T. M.

10.1101/142125 — epidemiology — Posted on 2017-07-05

1231 Hes1 oscillations synchronize and refine condensation formation and patterning of the avian limb skeleton

Bhat, R.; Glimm, T.; Linde-Medina, M.; Cui, C.; Newman, S.

10.1101/157446 — developmental biology — Posted on 2017-07-05

1232 Deep convolutional neural networks allow analysis of cell motility during stem cell differentiation and neoplastic transformation

Kimmel, J.; Brack, A.; Marshall, W. F.

10.1101/159202 — bioinformatics — Posted on 2017-07-05

1233 Efficient strategies for screening large-scale genetic interaction networks

Deshpande, R.; Nelson, J.; Simpkins, S. W.; Costanzo, M.; Piotrowski, J. S.; Li, S. C.; Boone, C.; Myers, C. L.

10.1101/159632 — systems biology — Posted on 2017-07-05

1234 Quantifying 35 transcripts in a single tube: Model-based calibration of the GeXP RT-PCR assay

Marquardt, P.; Werthmann, B.; Raetzel, V.; Haas, M.; Marwan, W.

10.1101/159723 — systems biology — Posted on 2017-07-05

1235 Improved accuracy of lesion to symptom mapping with multivariate sparse canonical correlations

Pustina, D.; Avants, B.; Faseyitan, O.; Medaglia, J.; Coslett, H. B.

10.1101/149260 — neuroscience — Posted on 2017-07-05

1236 Data-driven subtyping of behavioural problems associated with ADHD in children

Bathelt, J.; Holmes, J.; - the CALM team, ; Astle, D. E.

10.1101/158949 — neuroscience — Posted on 2017-07-05

1237 Mind-wandering in people with hippocampal amnesia

McCormick, C.; Rosenthal, C. R.; Miller, T. D.; Maguire, E.

10.1101/159681 — neuroscience — Posted on 2017-07-05

1238 Mapping-based all-RNA-information sequencing analysis (ARIseq) pipeline simultaneously revealed taxonomic composition, gene expression, and their correlation in an acidic stream ecosystem

Tsuboi, A.; Itouga, M.; Hongoh, Y.; Moriya, S.

10.1101/159293 — microbiology — Posted on 2017-07-05

1239 Quartz-Seq2: a high-throughput single-cell RNA-sequencing method that effectively uses limited sequence reads

Sasagawa, Y.; Danno, H.; Takada, H.; Ebisawa, M.; Hayashi, T.; Kurisaki, A.; Nikaido, I.

10.1101/159384 — genomics — Posted on 2017-07-05

1240 Invasion fitness for gene-culture co-evolution in family-structured populations and an application to cumulative culture under vertical transmission

Mullon, C.; Lehmann, L.

10.1101/102624 — evolutionary biology — Posted on 2017-07-05

1241 Lineage structure of Streptococcus pneumoniae is driven by immune selection on the groEL heat-shock protein.

Lourenco, J.; Watkins, E. R.; Obolski, U.; Peacock, S. J.; Morris, C.; Maiden, M. C. J.; Gupta, S.

10.1101/082990 — epidemiology — Posted on 2017-07-05

1242 Privacy-preserving generative deep neural networks support clinical data sharing

Beaulieu-Jones, B. K.; Wu, Z. S.; Williams, C.; Greene, C. S.

10.1101/159756 — bioinformatics — Posted on 2017-07-05

1243 In vivo Imaging β-cell Function Reveals Two Waves of β-cell Maturation

Zhao, J.; Zong, W.; Wu, Y.; Shen, J.; Gou, D.; Zhao, Y.; Wu, R.; Niu, F.; Wang, X.; Zheng, X.; Wang, A.; Zhang, Y.; Xiong, J.-W.; Chen, L.; Liu, Y.

10.1101/159673 — developmental biology — Posted on 2017-07-05

1244 Network simulations of interneuron circuits in the honeybee primary auditory center

Kumaraswamy, A.; Maksutov, A.; Kai, K.; Ai, H.; Ikeno, H.; Wachtler, T.

10.1101/159533 — bioinformatics — Posted on 2017-07-05

1245 Evidence of compensation in the brain networks of Lewy body dementia and Alzheimer’s disease patients

Peraza, L. R.; Cromarty, R.; Kobeleva, X.; Firbank, M. J.; Killen, A.; Graziadio, S.; Thomas, A. J.; O'Brien, J. T.; Taylor, J.-P.

10.1101/159491 — neuroscience — Posted on 2017-07-04

1246 Heritability of the Symbiodinium community in vertically- and horizontally-transmitting broadcast spawning corals

Quigley, K.; Willis, B.; Bay, L.

10.1101/100453 — molecular biology — Posted on 2017-07-04

1247 SParticle, an algorithm for the analysis of filamentous microorganisms in submerged cultures

Willemse, J.; Buke, F.; van Dissel, D.; Grevink, S.; Claessen, D.; van Wezel, G. P.

10.1101/159475 — microbiology — Posted on 2017-07-04

1248 Zinc storage granules in the Malpighian tubules of Drosophila melanogaster

Tejeda-Guzman, C.; Rosas-Arellano, A.; Kroll, T.; Webb, S. M.; Barajas-Aceves, M.; Osorio, B.; Missirlis, F.

10.1101/159558 — genetics — Posted on 2017-07-04

1249 Morphology-driven downscaling of Streptomyces lividans to micro-cultivation

van Dissel, D.; van Wezel, G.

10.1101/159509 — bioengineering — Posted on 2017-07-04

1250 RXFP1 expression is regulated by miR-144-3p in Fibroblasts from Patients with Idiopathic Pulmonary Fibrosis

Bahudhanapati, H.; Tan, J.; Dutta, J. A.; Strock, S. B.; Zhang, Y.; Kass, D. J.

10.1101/159459 — biochemistry — Posted on 2017-07-04

1251 CRISPR/Cas9-APEX-mediated proximity labeling enables discovery of proteins associated with a predefined genomic locus in living cells

Myers, S. A.; Wright, J.; Zhang, F.; Carr, S. A.

10.1101/159517 — biochemistry — Posted on 2017-07-04

1252 Genome-wide identification of intrasplicing events in the human transcriptome and hints to their regulatory potential

Radtke, M.; Srndic, I.; Schroeder, R.

10.1101/159350 — biochemistry — Posted on 2017-07-04

1253 Modelling of the cardiopulmonary responses to maximal aerobic exercise in patients with cystic fibrosis

Williams, C. A.; Wedgwood, K. C. A.; Mohammadi, H.; Tomlinson, O. W.; Tsaneva-Atanasova, K.

10.1101/155713 — physiology — Posted on 2017-07-04

1254 The successor representation in human reinforcement learning

Momennejad, I.; Russek, E. M.; Cheong, J. H.; Botvinick, M. M.; Daw, N.; Gershman, S. J.

10.1101/083824 — neuroscience — Posted on 2017-07-04

1255 Genome-wide association mapping and genomic prediction unravels CBSD resistance in a Manihot esculenta breeding population

Kayondo, S. I.; Pino Del Carpio, D.; Lozano, R.; Ozimati, A.; Wolfe, M. D.; Baguma, Y.; Gracen, V.; Samuel, O.; Ferguson, M.; Kawuki, R.; Jannink, J.-L.

10.1101/158543 — genetics — Posted on 2017-07-04

1256 Tissue-specific downregulation of EDTP suppresses polyglutamine protein aggregates and extends lifespan in Drosophila

Xiao, C.; Qiu, S.; Robertson, R. M.; Seroude, L.

10.1101/130559 — genetics — Posted on 2017-07-04

1257 Biomechanical control of lysosomal secretion via the VAMP7 hub: a tug-of-war mechanism between VARP and LRRK1

Wang, G.; Nola, S.; Bovio, S.; Coppey-Moisan, M.; Lafont, F.; Galli, T.

10.1101/159285 — cell biology — Posted on 2017-07-04

1258 Neuromodulatory circuit effects on Drosophila feeding behaviour and metabolism

Eriksson, A.; Raczkowska, M.; Navawongse, R.; Choudhury, D.; Stewart, J.; Tang, Y. L.; Wang, Z.; Claridge-Chang, A.

10.1101/086413 — animal behavior and cognition — Posted on 2017-07-04

1259 ShapeRotator: an R package for standardised rigid rotations of articulated Three-Dimensional structures with application for geometric morphometrics

Vidal-Garcia, M.; Bandara, L.; Keogh, J. S.

10.1101/159392 — evolutionary biology — Posted on 2017-07-04

1260 Revisiting Chemoaffinity Theory: Chemotactic Implementation Of Topographic Axonal Projection

Naoki, H.

10.1101/136291 — neuroscience — Posted on 2017-07-04

1261 Mechanisms of surface antigenic variation in the human pathogenic fungus Pneumocystis jirovecii

Schmid-Siegert, E.; Richard, S.; Luraschi, A.; Muehlethaler, K.; Pagni, M.; Hauser, P.

10.1101/158881 — microbiology — Posted on 2017-07-04

1262 Nucleus Specific Expression In The Multinucleated Mushroom-Forming Fungus Agaricus bisporus Reveals Different Nuclear Regulatory Programs

Gehrmann, T.; Pelkmans, J. F.; Ohm, R. A.; Vos, A. M.; Sonnenberg, A. S. M.; Baars, J. J. P.; Wosten, H. A. B.; Reinders, M. J. T.; Abeel, T.

10.1101/141689 — microbiology — Posted on 2017-07-04

1263 The sek-1 p38 MAP kinase pathway modulates Gq signaling in C. elegans

Hoyt, J. M.; Wilson, S. K.; Kasa, M.; Rise, J. S.; Topalidou, I.; Ailion, M.

10.1101/093252 — genetics — Posted on 2017-07-04

1264 Accumulation and retention of radioactive elements in biofilm communities surrounding the accident site of the Fukushima Daiichi Nuclear Power Plant

Moriya, S.; Otsu, H.; Kihara, K.; Kato, Y.; Itouga, M.; Sakata, K.; Kikuchi, J.; Yamakawa, H.; Suga, J.

10.1101/106211 — ecology — Posted on 2017-07-04

1265 Optical inhibition of zebrafish behavior with anion channelrhodopsins

Mohamed, G. A.; Cheng, R.-K.; Ho, J.; Krishnan, S.; Mohammad, F.; Claridge-Chang, A.; Jesuthasan, S.

10.1101/158899 — neuroscience — Posted on 2017-07-04

1266 MCE domain proteins: conserved inner membrane lipid-binding proteins required for outer membrane homeostasis

Isom, G.; Davies, N.; Chong, Z.-S.; Bryant, J.; Jamshad, M.; Sharif, M.; Cunningham, A.; Knowles, T.; Chng, S.-S.; Cole, J.; Henderson, I.

10.1101/159053 — microbiology — Posted on 2017-07-04

Broce, I.; Karch, C. M.; Wen, N.; Fan, C. C.; Wang, Y.; Hong Tan, C.; Kouri, N.; Ross, O. A.; Höglinger, G. U.; Muller, U.; Hardy, J.; - International FTD-Genomics Consortium (IFGC), ; Momeni, P.; Hess, C. P.; Dillon, W. P.; Miller, Z. A.; Bonham, L. W.; Rabinovici, G. D.; Rosen, H. J.; Schellenberg, G. D.; Franke, A.; Karlsen, T. H.; Veldink, J. H.; Ferrari, R.; Yokoyama, J. S.; Miller, B. L.; Andreassen, O. A.; Dale, A. M.; Desikan, R. S.; Sugrue, L. P.

10.1101/157875 — genetics — Posted on 2017-07-04

1268 Three-dimensional cell neighbourhood impacts differentiation in the inner mass cells of the mouse blastocyst

Fischer, S. C.; Corujo-Simon, E.; Lilao-Garzon, J.; Stelzer, E. H. K.; Munoz-Descalzo, S.

10.1101/159301 — developmental biology — Posted on 2017-07-04

1269 Context-dependent deposition and regulation of mRNAs in P-bodies

Wang, C.; Schmich, F.; Weidner, J.; Beerenwinkel, N.; Spang, A.

10.1101/159376 — cell biology — Posted on 2017-07-04

1270 Biomechanical control of lysosomal secretion via the VAMP7 hub: a tug-of-1 war mechanism between VARP and LRRK1

Wang, G.; Nola, S.; Bovio, S.; Coppey-Moisan, M.; Lafont, F.; Galli, T.

10.1101/159285 — cell biology — Posted on 2017-07-04

1271 Action potential counting at giant mossy fiber terminals gates information transfer in the hippocampus

Chamberland, S.; Timofeeva, Y.; Evstratova, A.; Volynski, K.; Toth, K.

10.1101/158444 — neuroscience — Posted on 2017-07-04

1272 Single nucleus analysis of the chromatin landscape in mouse forebrain development

Preissl, S.; Fang, R.; Zhao, Y.; Raviram, R.; Zhang, Y.; Sos, B. C.; Huang, H.; Gorkin, D. U.; Afzal, V.; Dickel, D. E.; Kuan, S.; Visel, A.; Pennacchio, L. A.; Zhang, K.; Ren, B.

10.1101/159137 — genomics — Posted on 2017-07-04

1273 Functional dissection of the enhancer repertoire in human embryonic stem cells

Barakat, T. S.; Halbritter, F.; Zhang, M.; Rendeiro, A. F.; Bock, C.; Chambers, I.

10.1101/146696 — genomics — Posted on 2017-07-04

1274 Fixed effect variance and the estimation of the heritability: Issues and solutions

de Villemereuil, P.; Morrissey, M. B.; Nakagawa, S.; Schielzeth, H.

10.1101/159210 — evolutionary biology — Posted on 2017-07-04

1275 Tracheophyte genomes keep track of the deep evolution of the Caulimoviridae

Diop, S.; Geering, A. D. W.; Alfama-Depauw, F.; Loaec, M.; Teycheney, P.-Y.; Maumus, F.

10.1101/158972 — evolutionary biology — Posted on 2017-07-04

1276 Physiological tolerance of the early life history stages of fresh water prawn (Macrobrachium rosenbergii De Man, 1879) to environmental stress

John, J.; Siva, V. S.; Kumar, A.; Ebenezer, V.; Raika, P.; Khalifa, U.; Thanumalya, S.; Sanjeevi, P.

10.1101/159244 — developmental biology — Posted on 2017-07-04

1277 Anti-HIV activity prediction and enrichment identify novel human targets for Anti-HIV therapy

Dai, S.-X.; Li, W.-X.; Li, H.-J.; Liu, J.-Q.; Zheng, J.-J.; Wang, Q.; Chen, B.-W.; Gao, Y.-D.; Li, G.-H.; Huang, J.-F.

10.1101/159236 — bioinformatics — Posted on 2017-07-04

1278 STRetch: detecting and discovering pathogenic short tandem repeats expansions

Dashnow, H.; Lek, M.; Phipson, B.; Halman, A.; Davis, M.; Lamont, P.; Laing, N.; MacArthur, D.; Oshlack, A.

10.1101/159228 — bioinformatics — Posted on 2017-07-04

1279 C3G dynamically associates with Nuclear speckles and regulates mRNA splicing

Shakyawar, D. K.; Bhattiprolu, M.; Radha, V.

10.1101/159269 — cell biology — Posted on 2017-07-04

1280 Risk factor analysis of equine strongyle resistance to anthelmintics

Salle, G.; Cortet, J.; Bois, I.; Dubes, C.; Guyot-Sionest, Q.; Larrieu, C.; Landrin, V.; Majorel, G.; Wittreck, S.; Woringer, E.; Courouce-Malblanc, A.; Guillot, J.; Jacquiet, P.; Guegnard, F.; Blanchard, A.; Leblond, A.

10.1101/158105 — zoology — Posted on 2017-07-03

1281 Is obesity a genetic disease? Human obese transcriptome analysis in monozygotic twins

Font-Clos, F.; Zapperi, S.; La Porta, C. A. M.

10.1101/159186 — systems biology — Posted on 2017-07-03

1282 Cas Adaptor Proteins Coordinate Sensory Axon Fasciculation

Vahedi-Hunter, T. A.; Riccomagno, M. M.

10.1101/159194 — neuroscience — Posted on 2017-07-03

1283 Deep convolution neural networks allow analysis of cell motility during stem cell differentiation and neoplastic transformation

Kimmel, J.; Brack, A.; Marshall, W. F.

10.1101/159202 — bioinformatics — Posted on 2017-07-03

1284 Signatures of the evolution of parthenogenesis and cryptobiosis in the genomes of panagrolaimid nematodes

Schiffer, P. H.; Danchin, E.; Burnell, A. M.; Schiffer, A.-M.; Creevey, C.; Wong, S.; Dix, I.; O'Mahony, G.; Culleton, B. A.; Rancurel, C.; Stier, G.; Martinez-Salazar, E. A.; Marconi, A.; Trivedi, U.; Kroiher, M.; Thorne, M. A. S.; Schierenberg, E.; Wiehe, T.; Blaxter, M.

10.1101/159152 — evolutionary biology — Posted on 2017-07-03

1285 Comparison of fine-scale recombination maps in fungal plant pathogens reveals dynamic recombination landscapes and intragenic hotspots

Stukenbrock, E. H.; Dutheil, J. Y.

10.1101/158907 — evolutionary biology — Posted on 2017-07-03

1286 MCE domain proteins: conserved inner membrane lipid-binding proteins required for outer membrane homeostasis

Isom, G.; Davies, N.; Chong, Z.-S.; Bryant, J.; Jamshad, M.; Sharif, M.; Cunningham, A.; Knowles, T.; Chng, S.-S.; Cole, J.; Henderson, I.

10.1101/159053 — microbiology — Posted on 2017-07-03

1287 MTAG: Multi-Trait Analysis of GWAS

Turley, P.; Walters, R. K.; Maghzian, O.; Okbay, A.; Lee, J. J.; Fontana, M. A.; Nguyen-Viet, T. A.; Wedow, R.; Zacher, M.; Furlotte, N. A.; - 23andMe Research Team, ; - Social Science Genetic Association Consortium, ; Magnusson, P.; Oskarsson, S.; Johannesson, M.; Visscher, P. M.; Laibson, D.; Cesarini, D.; Neale, B.; Benjamin, D. J.

10.1101/118810 — genomics — Posted on 2017-07-03

1288 Estimates of Introgression as a Function of Pairwise Distances

Pfeifer, B.; Kapan, D. D.

10.1101/154377 — evolutionary biology — Posted on 2017-07-03

1289 Molecular structures enumeration and virtual screening in the chemical space with RetroPath2.0

Koch, M.; Duigou, T.; Carbonell, P.; Faulon, J.-L.

10.1101/158147 — systems biology — Posted on 2017-07-03

1290 Genetic Architecture and Molecular Networks Underlying Leaf Thickness in Desert-Adapted Tomato Solanum pennellii

Coneva, V.; Frank, M. H.; de Luis Balaguer, M. A.; Li, M.; Sozzani, R.; Chitwood, D. H.

10.1101/111005 — plant biology — Posted on 2017-07-03

1291 Light-dependent decomposition of FICZ, an endogenous ligand of the aryl hydrocarbon receptor

Zhang, C.; Creech, K. L.; Zuercher, W. J.; Willson, T. M.

10.1101/158980 — pharmacology and toxicology — Posted on 2017-07-03

1292 Saccades phase-locked to alpha oscillations in the occipital and medial temporal lobe enhance memory encoding

Staudigl, T.; Hartl, E.; Noachtar, S.; Doeller, C. F.; Jensen, O.

10.1101/158758 — neuroscience — Posted on 2017-07-03

1293 Optical inhibition of zebrafish behavior with anion channelrhodopsins

Mohamed, G. A.; Cheng, R.-K.; Ho, J.; Krishnan, S.; Mohammad, F.; Claridge-Chang, A.; Jesuthasan, S.

10.1101/158899 — neuroscience — Posted on 2017-07-03

1294 Reinforcement learning over time: spaced versus massed training establishes stronger value associations

Wimmer, G. E.; Poldrack, R. A.

10.1101/158964 — neuroscience — Posted on 2017-07-03

1295 Small subsets of highly connected taxa predict compositional change in microbial communities

Herren, C.; McMahon, K. D.

10.1101/159087 — microbiology — Posted on 2017-07-03

1296 Mechanisms of surface antigenic variation in the human pathogenic fungus Pneumocystis jirovecii

Schmid-Siegert, E.; Richard, S.; Luraschi, A.; Muehlethaler, K.; Pagni, M.; Hauser, P.

10.1101/158881 — microbiology — Posted on 2017-07-03

1297 Whippet: an efficient method for the detection and quantification of alternative splicing reveals extensive transcriptomic complexity

Sterne-Weiler, T.; Weatheritt, R. J.; Best, A.; Ha, K. C. H.; Blencowe, B. J.

10.1101/158519 — genomics — Posted on 2017-07-03

1298 Porcine commensal Escherichia coli: A reservoir for class 1 integrons associated with IS26

Reid, C. J.; Wyrsch, E. R.; Roy Chowdhury, P.; Zingali, T.; Liu, M.; Darling, A. E.; Chapman, T. A.; Djordjevic, S. P.

10.1101/158808 — genomics — Posted on 2017-07-03

1299 Magic pools: parallel assessment of transposon delivery vectors in bacteria

Liu, H.; Price, M.; Waters, R. J.; Ray, J.; Carlson, H. K.; Lamson, J. S.; Chakraborty, R.; Arkin, A. P.; Deutschbauer, A. M.

10.1101/158840 — genomics — Posted on 2017-07-03

1300 The first near-complete assembly of the hexaploid bread wheat genome, Triticum aestivum

Zimin, A. V.; Puiu, D.; Hall, R.; Kingan, S.; Salzberg, S. L.

10.1101/159111 — genomics — Posted on 2017-07-03

1301 Mapping transcription factor occupancy using minimal numbers of cells in vitro and in vivo

Tosti, L.; Ashmore, J.; Tan, B. S. N.; Carbone, B.; Mistri, T. K.; Wilson, V.; Tomlinson, S. R.; Kaji, K.

10.1101/158931 — genomics — Posted on 2017-07-03

1302 Widespread intronic polyadenylation diversifies immune cell transcriptomes

Singh, I.; Lee, S.-H.; Samur, M. K.; Tai, Y.-T.; Munshi, N.; Mayr, C.; Leslie, C.

10.1101/158998 — genomics — Posted on 2017-07-03

1303 The pomegranate (Punica granatum L.) genome provides insights into fruit quality and ovule developmental biology

Yuan, Z.; Fang, Y.; Zhang, T.; Fei, Z.; Han, F.; Liu, C.; Liu, M.; Xiao, W.; Zhang, W.; Zhang, M.; Ju, Y.; Xu, H.; Dai, H.; Liu, Y.; Chen, Y.; Wang, L.; Zhou, J.; Guan, D.; Yan, M.; Xia, Y.; Huang, X.; Liu, D.; Wei, H.; Zheng, H.

10.1101/158857 — genomics — Posted on 2017-07-03

1304 Type 2 Diabetes Risk Alleles Reveal a Role for Peptidylglycine Alpha-amidating Monooxygenase in Beta Cell Function

Raimondo, A.; Thomsen, S. K.; Hastoy, B.; Umapathysivam, M. M.; Dai, X.-Q.; Manning Fox, J. E.; Barrett, A.; Groves, C. J.; Bautista, A.; Beer, N. L.; Clark, A.; MacDonald, P. E.; Rorsman, P.; Gloyn, A. L.

10.1101/158642 — genetics — Posted on 2017-07-03

1305 Complex genetic patterns in human arise from a simple range-expansion model over continental landmasses

Kanitz, R.; Guillot, E.; Antoniazza, S.; Neuenschwander, S.; Goudet, J.

10.1101/158923 — genetics — Posted on 2017-07-03

1306 Hes1 oscillations synchronize and refine condensation formation and patterning of the avian limb skeleton

Bhat, R.; Glimm, T.; Linde-Medina, M.; Cui, C.; Newman, S.

10.1101/157446 — developmental biology — Posted on 2017-07-03

1307 A Fluorogenic Array Tag for Temporally Unlimited Single Molecule Tracking

Ghosh, R. P.; Franklin, M. J.; Draper, W. E.; Shi, Q.; Liphardt, J. T.

10.1101/159004 — biophysics — Posted on 2017-07-03

1308 MassBlast: A workflow to accelerate RNA-seq and DNA database analysis

Verissimo, A.; Bassard, J.-E.; Julien-Laferriere, A.; Sagot, M.-F.; Vinga, S.

10.1101/131953 — bioinformatics — Posted on 2017-07-03

1309 Column subset selection for single-cell RNA-Seq clustering

McCurdy, S.; Ntranos, V.; Pachter, L.

10.1101/159079 — bioinformatics — Posted on 2017-07-03

1310 KinFin: Software for taxon-aware analysis of clustered protein sequences

Laetsch, D. R.; Blaxter, M. L.

10.1101/159145 — bioinformatics — Posted on 2017-07-03

1311 Do Sigmoidal Acquisition Curves Indicate Conformity?

Smaldino, P. E.; Aplin, L. M.; Farine, D. R.

10.1101/159038 — animal behavior and cognition — Posted on 2017-07-03

1312 The quality of social relationships affects male health in a complex bird society

Wascher, C. A. F.; Robles, H.; Canestrari, D.; Baglione, V.

10.1101/159129 — animal behavior and cognition — Posted on 2017-07-03

1313 Gene length as a regulator for ribosome recruitment and protein synthesis: theoretical insights

Fernandes, L. D.; de Moura, A.; Ciandrini, L.

10.1101/105296 — systems biology — Posted on 2017-07-03

1314 Mechanistic Modeling Quantifies The Influence Of Tumor Growth Kinetics On The Response To Anti-Angiogenic Treatment

Gaddy, T. D.; Arnheim, A. D.; Finley, S. D.

10.1101/136531 — systems biology — Posted on 2017-07-03

1315 Parent-progeny imputation from pooled samples forcost-efficient genotyping in plant breeding

Technow, F.; Gerke, J.

10.1101/157883 — genetics — Posted on 2017-07-03

1316 The emergence, maintenance and demise of diversity in a spatially variable antibiotic regime

Leale, A. M.; Kassen, R.

10.1101/158337 — evolutionary biology — Posted on 2017-07-03

1317 Evaluating Metagenome Assembly on a Simple Defined Community with Many Strain Variants

Awad, S.; Irber, L.; Brown, C. T.

10.1101/155358 — bioinformatics — Posted on 2017-07-03

1318 Trait Heritability in Major Transitions

Herron, M. D.; Ratcliff, W. C.

10.1101/041830 — evolutionary biology — Posted on 2017-07-03

1319 Changes in extracellular matrix cause RPE cells to make basal deposits and activate the alternative complement pathway.

Fernandez-Godino, R.; Bujakowska, K. M.; Pierce, E. A.

10.1101/152835 — cell biology — Posted on 2017-07-03

1320 Biochemical characterization and essentiality of Plasmodium fumarate hydratase

Jayaraman, V.; Suryavanshi, A.; Kalale, P.; Kunala, J.; Balaram, H.

10.1101/158956 — biochemistry — Posted on 2017-07-03

1321 Divergent leaf shapes among Passiflora species arise from a shared juvenile morphology

Chitwood, D. H.; Otoni, W. C.

10.1101/067520 — plant biology — Posted on 2017-07-03

1322 Cortical circuit based lossless neural integrator for perceptual decision-making

Lee, J. H.; Tsunada, J.; Vijayan, S.; Cohen, Y. E.

10.1101/158865 — neuroscience — Posted on 2017-07-03

1323 Variation in recombination rate and its genetic determinism in sheep (Ovis aries) populations from combining multiple genome-wide datasets

Petit, M.; Astruc, J.-M.; Sarry, J.; Drouilhet, L.; Fabre, S.; Moreno, C.; Servin, B.

10.1101/104976 — genetics — Posted on 2017-07-03

1324 Facultative adjustment of paternal care in the face of female infidelity in dunnocks

Santos, E. S. A.; Nakagawa, S.

10.1101/158816 — animal behavior and cognition — Posted on 2017-07-03

1325 Motor expertise facilitates the precision of state extrapolation in perception

Ludolph, N.; Plöger, J.; Giese, M. A.; Ilg, W.

10.1101/158469 — neuroscience — Posted on 2017-07-03

1326 PHASIS: A computational suite for de novo discovery and characterization of phased, siRNA-generating loci and their miRNA triggers

Kakrana, A.; Li, P.; Patel, P.; Hammond, R.; Anand, D.; Mathioni, S.; Meyers, B.

10.1101/158832 — bioinformatics — Posted on 2017-07-03

1327 MS Western, a method of multiplexed absolute protein quantification is a practical alternative to western blotting

Kumar, M.; Joseph, S. R.; Augsburg, M.; Bogdanova, A.; Drechsel, D.; Vastenhouw, N. L.; Buchholz, F.; Gentzel, M.; Shevchenko, A.

10.1101/156943 — biochemistry — Posted on 2017-07-03

1328 A mouse model of necrotic biliary pancreatitis induced by combining gallstone formation and ligation of the biliary-pancreatic duct

Yuan, Z.; Zheng, J.; Mei, Z.; Hu, G.; Zeng, Y.

10.1101/158915 — pathology — Posted on 2017-07-03

1329 Reliability of fMRI time series:Similarity of neural processing during movie viewing

Schmaelzle, R.; Imhof, M. A.; Grall, C.; Flaisch, T.; Schupp, H. T.

10.1101/158188 — neuroscience — Posted on 2017-07-03

1330 Robust diagnosis of Ewing sarcoma by immunohistochemical detection of super-enhancer-driven EWSR1-ETS targets

Baldauf, M. C.; Orth, M. F.; Dallmayer, M.; Marchetto, A.; Gerke, J. S.; Alba Rubio, R.; Kiran, M. M.; Musa, J.; Knott, M. M. L.; Ohmura, S.; Li, J.; Akpolat, N.; Akatli, A. N.; Ozen, O.; Dirksen, U.; Hartmann, W.; de Alava, E.; Baumhoer, D.; Sannino, G.; Kirchner, T.; Grunewald, T. G. P.

10.1101/158766 — pathology — Posted on 2017-07-02

1331 Selection in response to community diversity alters plant performance in newly assembled test communities

van Moorsel, S. J.; Schmid, M. W.; Hahl, T.; Zuppinger-Dingley, D.; Schmid, B.

10.1101/158709 — ecology — Posted on 2017-07-02

1332 Race Model for the Stop Signal Paradigm Revisited: Perfect Negative Dependence

Colonius, H.; Diederich, A.

10.1101/158485 — neuroscience — Posted on 2017-07-02

1333 Deconstructing multivariate decoding for the study of brain function

Hebart, M. N.; Baker, C. I.

10.1101/158493 — neuroscience — Posted on 2017-07-02

1334 Cerebral ischemia-induced genes are increased in acute schizophrenia: An opportunity for clinical translation of genomic research findings

Moises, H. W.; Hess, M.; Binder, H.

10.1101/158436 — neuroscience — Posted on 2017-07-02

1335 Cortical circuits implement optimal context integration

Yier, R.; Mihalas, S.

10.1101/158360 — neuroscience — Posted on 2017-07-02

1336 Sensitivity to sequential regularities in risky decision making

Kobor, A.; Takacs, A.; Janacsek, K.; Kardos, Z.; Csepe, V.; Nemeth, D.

10.1101/158253 — neuroscience — Posted on 2017-07-02

1337 Linking Normative Models of Natural Tasks to Descriptive Models of Neural Response

Jaini, P.; Burge, J.

10.1101/158741 — neuroscience — Posted on 2017-07-02

1338 Nonpolio enteroviruses can also be recovered from non-reproducible cytopathology in L20B cell line.

Adeniji, J. A.; Ibok, U. I.; Ayinde, O. T.; Oragwa, A. O.; George, U. E.; Faleye, T. O. C.; Adewumi, M. O.

10.1101/158626 — microbiology — Posted on 2017-07-02

1339 Continuous generation of tandem transposable elements in Drosophila populations provides a substrate for the evolution of satellite DNA

McGurk, M. P.; Barbash, D. A.

10.1101/158386 — genomics — Posted on 2017-07-02

1340 sNucDrop-Seq: Dissecting cell-type composition and neuronal activity state in mammalian brains by massively parallel single-nucleus RNA-Seq

Hu, P.; Fabyanic, E.; Zhou, Z.; Wu, H.

10.1101/154476 — genomics — Posted on 2017-07-02

1341 Genome-wide association mapping and genomic prediction unravels CBSD resistance in a Manihot esculenta breeding population

Kayondo, S. I.; Pino Del Carpio, D.; Lozano, R.; Ozimati, A.; Wolfe, M. D.; Baguma, Y.; Gracen, V.; Samuel, O.; Ferguson, M.; Kawuki, R.; Jannink, J.-L.

10.1101/158543 — genetics — Posted on 2017-07-02

1342 Energy metabolites mediated cross-protection to heat, drought and starvation induced plastic responses in tropical D. ananassae of wet-dry seasons

Lambhod, C.; Pathak, A.; Munjal, A. K.; Parkash, R.

10.1101/158634 — evolutionary biology — Posted on 2017-07-02

1343 Spring frost controls spring tree phenology along elevational gradients on the southeastern Tibetan Plateau

Wang, Y.; Case, B.; Rossi, S.; Zhu, L.; Liang, E.; Ellison, A.

10.1101/158733 — ecology — Posted on 2017-07-02

1344 Fibronectin type III and intracellular domains of Toll-like receptor 4 interactor with leucine-rich repeats (Tril) are required for developmental signaling

Kim, H.-S.; McKnite, A.; Xie, Y.; Christian, J. L.

10.1101/158782 — cell biology — Posted on 2017-07-02

1345 NanoJ-SQUIRREL: quantitative mapping and minimisation of super-resolution optical imaging artefacts

Culley, S.; Albrecht, D.; Jacobs, C.; Pereira, P. M.; Leterrier, C.; Mercer, J.; Henriques, R.

10.1101/158279 — biophysics — Posted on 2017-07-02

1346 Transferable tICA-Metadynamics: Efficient sampling of protein mutants by transferring information from the wild type’s Markov state model

Sultan, M. M.; Pande, V.

10.1101/158592 — biophysics — Posted on 2017-07-02

1347 Receptor-Based Mechanism of Relative Sensing in Mammalian Signaling Networks

Lyashenko, E.; Niepel, M.; Dixit, P.; Lim, S. K.; Sorger, P.; Vitkup, D.

10.1101/158774 — systems biology — Posted on 2017-07-02

1348 The plant circadian clock influences rhizosphere community structure and function

Hubbard, C.; Brock, M. T.; van Diepen, L.; Maignien, L.; Ewers, B.; Weinig, C.

10.1101/158576 — plant biology — Posted on 2017-07-02

1349 The genetic architecture of recurrent segregation distortion in Arabidopsis thaliana

Seymour, D. K.; Chae, E.; Ariöz, B. I.; Koenig, D.; Weigel, D.

10.1101/158527 — plant biology — Posted on 2017-07-02

1350 Easyml: Easily Build And Evaluate Machine Learning Models

Hendricks, P.; Ahn, W.-Y.

10.1101/137240 — neuroscience — Posted on 2017-07-02

1351 Using mathematical modeling to define kinetic properties of HIV-specific CD8+ T-cell responses

Yang, Y.; Ganusov, V. V.

10.1101/158683 — immunology — Posted on 2017-07-02

1352 Community evolution increases plant productivity at low diversity

van Moorsel, S. J.; Hahl, T.; Wagg, C.; De Deyn, G. B.; Flynn, D. F. B.; Zuppinger-Dingley, D.; Schmid, B.

10.1101/111617 — ecology — Posted on 2017-07-02

1353 Host Microbiome Richness Predicts Resistance to Disturbance by Pathogenic Infection in a Vertebrate Host

Harrison, X. A.; Price, S. J.; Hopkins, K.; Leung, W. T. M.; Sergeant, C.; Garner, T.

10.1101/158428 — ecology — Posted on 2017-07-02

1354 No supporting evidence of classification based on FFPE samples, ambiguity in classification of EGFR mutants, and inclusion of bona-fide platelet genes in discriminator sets indicate no biological basis for using RNA-seq from tumor-educated platelets as a source in "liquid biopsy"

Chakraborty, S.

10.1101/146134 — cancer biology — Posted on 2017-07-02

1355 Evaluating Metagenome Assembly on a Simple Defined Community with Many Strain Variants

Awad, S.; Irber, L.; Brown, C. T.

10.1101/155358 — bioinformatics — Posted on 2017-07-02

1356 Genetic-metabolic coupling for targeted metabolic engineering

Cardinale, S.; Tueros Farfan, F. G.; Sommer, M. O. A.

10.1101/156927 — bioengineering — Posted on 2017-07-02

1357 Integration of multiple data sources for gene network inference using genetic perturbation data

Liang, X.; Young, W. C.; Hung, L.-H.; Raftery, A. E.; Yeung, K. Y.

10.1101/158394 — systems biology — Posted on 2017-07-02

1358 Spatiotemporal Dynamics of the Bacterial Microbiota on Lacustrine Cladophora glomerata (Chlorophyta)

Braus, M. J.; Graham, L.; Whitman, T.

10.1101/096347 — microbiology — Posted on 2017-07-02

1359 Repeat associated mechanisms of genome evolution and function revealed by the Mus caroli and Mus pahari genomes

Thybert, D.; Roller, M.; Navarro, F. C. P.; Fiddes, I.; Streeter, I.; Feig, C.; Martin-Galvez, D.; Kolmogorov, M.; Janousek, V.; Akanni, W.; Aken, B.; Aldridge, S.; Chakrapani, V.; Chow, W.; Clarke, L.; Cummins, C.; Doran, A.; Dunn, M.; Goodstadt, L.; Howe, K.; Howell, M.; Josselin, A.-A.; Karn, R. C.; Laukaitis, C. M.; Jingtao, L.; Martin, F.; Muffato, M.; Quail, M. A.; Sisu, C.; Stanke, M.; Stefflova, K.; Van Oosterhout, C.; Veyrunes, F.; Ward, B.; Yang, F.; Yazdanifar, G.; Zadissa, A.; Adams, D.; Brazma, A.; Gerstein, M.; Paten, B.; Pham, S.; Keane, T.; Odom, D. T.; Flicek, P.

10.1101/158659 — genomics — Posted on 2017-07-02

1360 Long non-coding RNA repertoire and regulation by nuclear exosome, cytoplasmic exonuclease and RNAi in fission yeast

Atkinson, S. R.; Marguerat, S.; Bitton, D. A.; Rodriguez-Lopez, M.; Rallis, C.; Lemay, J.-F.; Cotobal, C.; Malecki, M.; Mata, J.; Bachand, F.; Bahler, J.

10.1101/158477 — genomics — Posted on 2017-07-02

1361 A Cautionary Tail: Changes in Integrin Behavior with Labeling

Galbraith, C. G.; Davidson, M. W.; Galbraith, J. A.

10.1101/158618 — cell biology — Posted on 2017-07-02

1362 Lingering single-strand breaks trigger Rad51-independent homology-directed repair of collapsed replication forks in polynucleotide kinase/phosphatase mutant of fission yeast

Sanchez, A.; Gadaleta, M. C.; Limbo, O.; Russell, P.

10.1101/157354 — cell biology — Posted on 2017-07-02

1363 Mutation-Profile-Based Methods for Understanding Selection Forces in Cancer Somatic Mutations: A Comparative Analysis

Zhou, Z.; Zou, Y.; Liu, G.; Zhou, J.; Wu, J.; Zhao, S.; Su, Z.; Gu, X.

10.1101/021147 — cancer biology — Posted on 2017-07-02

1364 Resources For Interpreting Variants In Precision Genomic Oncology Applications

Tsang, H.; Addepalli, K.; Davis, S. R.

10.1101/144766 — bioinformatics — Posted on 2017-07-02

1365 NMR Analysis Of The Interaction Of Ethanol With The Nicotinic Acetylcholine Receptor

Naugler, D.; Cushley, R. J.; Clark-Lewis, I.

10.1101/139717 — molecular biology — Posted on 2017-07-01

1366 Morphogen And Community Effects Determine Cell Fates In Response To BMP4 Signaling In Human Embryonic Stem Cells

Nemashkalo, A.; Ruzo, A.; Heemskerk, I.; Warmflash, A.

10.1101/125989 — developmental biology — Posted on 2017-07-01

1367 Dynamic expression of tRNA-derived small RNAs define cellular states

Yim, D.; Krishna, S.; Lakshmanan, V.; Koh, J.; Park, J. E.; Cheong, J. K.; Low, J. L.; Lim, M.; Ip, J.; Nah, J. M.; Tan, I.; Iyer, N. G.; Guo, H.; Sze, S. K.; Raghavan, S.; Palakodeti, D.; DasGupta, R.