bioRxiv directory

Piotrowski, J. S.; Li, S. C.; Deshpande, R.; Simpkins, S. W.; Nelson, J.; Yashiroda, Y.; Barber, J.; Safizadeh, H.; Wilson, E.; Okada, H.; Gebre, A.; Kubo, K.; Torres, N.; LeBlanc, M.; Andrusiak, K.; Okamoto, R.; Yoshimura, M.; DeRango-Adem, E.; van Leeuwen, J.; Shirahige, K.; Baryshnikova, A.; Brown, G. W.; Hirano, H.; Costanzo, M.; Andrews, B.; Ohya, Y.; Osada, H.; Yoshida, M.; Myers, C. L.; Boone, C.

10.1101/112557 — systems biology — Posted on 2017-02-28

13 Active and poised promoter states drive folding of the extended HoxB locus in mouse embryonic stem cells

Barbieri, M.; Xie, S. Q.; Torlai Triglia, E.; de Santiago, I.; Branco, M. R.; Rueda, D.; Nicodemi, M.; Pombo, A.

10.1101/111773 — systems biology — Posted on 2017-02-28

14 Cohesion: A method for quantifying the connectivity of microbial communities

Herren, C.; McMahon, K.

10.1101/112391 — microbiology — Posted on 2017-02-28

15 A maternal-effect genetic incompatibility in Caenorhabditis elegans

Ben-David, E.; Burga, A.; Kruglyak, L.

10.1101/112524 — evolutionary biology — Posted on 2017-02-28

16 Analyzing ecological networks of species interactions

Delmas, E.; Besson, M.; Brice, M.-H.; Burkle, L.; Dalla Riva, G. V.; Fortin, M.-J.; Gravel, D.; Guimaraes, P.; Hembry, D.; Newman, E.; Olesen, J. M.; Pires, M.; Yeakel, J. D.; Poisot, T.

10.1101/112540 — ecology — Posted on 2017-02-28

17 A Bayesian Framework for Estimating Cell Type Composition from DNA Methylation Without the Need for Methylation Reference

Rahmani, E.; Schweiger, R.; Shenhav, L.; Eskin, E.; Halperin, E.

10.1101/112417 — bioinformatics — Posted on 2017-02-28

18 GMPR: A novel normalization method for microbiome sequencing data

Chen, J.; Chen, L.

10.1101/112565 — bioinformatics — Posted on 2017-02-28

19 A data-driven model for the assessment of age-dependent patterns of Tuberculosis burden and impact evaluation of novel vaccines.

Arregui, S.; Sanz, J.; Marinova, D.; Iglesias, M. J.; Samper, S.; Martin, C.; Moreno, Y.

10.1101/112409 — epidemiology — Posted on 2017-02-28

20 The Transcriptome of the Avian Malaria Parasite Plasmodium ashfordi Displays Host-Specific Gene Expression

Videvall, E.; Cornwallis, C. K.; Ahren, D.; Palinauskas, V.; Valkiūnas, G.; Hellgren, O.

10.1101/072454 — microbiology — Posted on 2017-02-28

21 Resource Competition Shapes the Response of Genetic Circuits

Qian, Y.; Huang, H.-H.; Jimenez, J.; Del Vecchio, D.

10.1101/091306 — synthetic biology — Posted on 2017-02-28

22 Specific effect of a dopamine partial agonist on counterfactual learning: evidence from Gilles de la Tourette syndrome

Salvador, A.; Worbe, Y.; Delorme, C.; Coricelli, G.; Gaillard, R.; Robbins, T. W.; Hartmann, A.; Palminteri, S.

10.1101/064345 — neuroscience — Posted on 2017-02-28

23 Size-Dependent Accumulation of the Mitotic Activator Cdc25 as a Mechanism of Size Control in Fission Yeast

Keifenheim, D.; Sun, X.-M.; D'Souza, E.; Ohira, M. J.; Magner, M.; Mayhew, M. B.; Marguerat, S.; Rhind, N.

10.1101/078592 — cell biology — Posted on 2017-02-28

24 Pan-cancer scale landscape of simple somatic mutations

Zhou, N.; Gallego, B.; Bao, J.; Tsafnat, G.

10.1101/112367 — genomics — Posted on 2017-02-28

25 Holocene selection for variants associated with cognitive ability: Comparing ancient and modern genomes.

Woodley of Menie, M. A.; Younuskunju, S.; Balan, B.; Piffer, D.

10.1101/109678 — genomics — Posted on 2017-02-28

26 Allopatric divergence, local adaptation, and multiple Quaternary refugia in a long-lived tree (Quercus spinosa) from subtropical China

Feng, L.; Zhang, Y.-P.; Chen, X.-D.; Yang, J.; Zhou, T.; Bai, G.-Q.; Yang, J.; Li, Z.-H.; Peng, C.-I.; Zhao, G.-F.

10.1101/112375 — evolutionary biology — Posted on 2017-02-28

27 Towards standard practices for sharing computer code and programs in neuroscience

Eglen, S.; Marwick, B.; Halchenko, Y.; Hanke, M.; Sufi, S.; Gleeson, P.; Silver, R. A.; Davison, A.; Lanyon, L.; Abrams, M.; Wachtler, T.; Willshaw, D. J.; Pouzat, C.; Poline, J.-B.

10.1101/045104 — neuroscience — Posted on 2017-02-28

28 High quality frozen extracts of Xenopus laevis eggs reveal size-dependent control of metaphase spindle micromechanics

Takagi, J.; Shimamoto, Y.

10.1101/112334 — cell biology — Posted on 2017-02-28

29 A global perspective on bioinformatics training needs

Brazas, M. D.; Brooksbank, C.; Jimenez, R. C.; Blackford, S.; Palagi, P. M.; De Las Rivas, J.; Ouellette, B. F. F.; Kumuthini, J.; Korpelainen, E.; Lewitter, F.; van Gelder, C. W. G.; Mulder, N.; Corpas, M.; Schneider, M. V.; Tan, T. W.; Clements, D.; Davies, A.; Attwood, T. K.

10.1101/098996 — scientific communication and education — Posted on 2017-02-27

30 Tracing the influence of land-use change on water quality and coral reefs using a Bayesian model

Brown, C. J.; Jupiter, S. D.; Albert, S.; Klein, C. J.; Mangubhai, S.; Mbui, M.; Mumby, P.; Olley, J.; Stewart-Koster, B.; Tulloch, V.; Wenger, A.

10.1101/112250 — ecology — Posted on 2017-02-27

31 Concern noted: A descriptive study of editorial expressions of concern in PubMed and PubMed Central.

Vaught, M.; Jordan, D. C.; Bastian, H.

10.1101/106757 — scientific communication and education — Posted on 2017-02-27

32 Improving data availability for brain image biobanking in healthy subjects: practice-based suggestions from an international multidisciplinary working group

Shenkin, S. D.; Pernet, C.; Nichols, T. E.; Poline, J.-B.; Matthews, P. M.; van der Lugt, A.; Mackay, C.; Linda, L.; Mazoyer, B.; Boardman, J. P.; Thompson, P. M.; Fox, N.; Marcus, D. S.; Sheikh, A.; Cox, S. R.; Anblagan, D.; Job, D. E.; Dickie, D. A.; Rodriguez, D.; Wardlaw, J. M.

10.1101/110460 — neuroscience — Posted on 2017-02-27

33 Particle Tracking facilitates real time Motion Compensation in 2D or 3D two-photon imaging of neuronal activity

Aghayee, S.; Bowen, Z.; Winkowski, D. E.; Harrington, M.; Kanold, P.; Losert, W.

10.1101/112284 — neuroscience — Posted on 2017-02-27

34 The mechanism of sphingolipid processing revealed by a GALC-SapA complex structure

Hill, C. H.; Cook, G. M.; Spratley, S. J.; Graham, S. C.; Deane, J. E.

10.1101/112029 — molecular biology — Posted on 2017-02-27

35 Granatum: a graphical single-cell RNA-seq analysis pipeline for genomics scientists

Zhu, X.; Wolfgruber, T.; Tasato, A.; Garmire, L.

10.1101/110759 — bioinformatics — Posted on 2017-02-27

36 The 3D Genome Browser: a web-based browser for visualizing 3D genome organization and long-range chromatin interactions

Wang, Y.; Zhang, B.; Zhang, L.; An, L.; Xu, J.; Li, D.; Choudhary, M. N.; Li, Y.; Hu, M.; Hardison, R.; Wang, T.; Yue, F.

10.1101/112268 — bioinformatics — Posted on 2017-02-27

37 Comparative genomics approaches accurately predict deleterious variants in plants

Kono, T. J. Y.; Lei, L.; Shih, C.-H.; Hoffman, P. J.; Morrell, P. L.; Fay, J. C.

10.1101/112318 — bioinformatics — Posted on 2017-02-27

38 BRD4 inhibitors block telomere elongation

Wang, S.; Pike, A.; Lee, S.; Connelly, C.; Greider, C. W.

10.1101/112169 — molecular biology — Posted on 2017-02-27

39 Identifying tagging SNPs for African specific genetic variation from the African Diaspora Genome

Johnston, H. R.; Hu, Y.-J.; Gao, J.; O'Connor, T. D.; Abecasis, G.; Wojcik, G. L.; Gignoux, C. R.; Gourraud, P.-A.; Lizee, A.; Hansen, M.; Genuario, R.; Bullis, D.; Lawley, C.; Kenny, E. E.; Bustamante, C.; Beaty, T. H.; Mathias, R. A.; Barnes, K. C.; Qin, Z. S.

10.1101/112235 — genomics — Posted on 2017-02-27

40 Gene editing in rat embryonic stem cells to produce in vitro models and in vivo reporters

Chen, Y.; Spitzer, S.; Agathou, S.; Karadottir, R. T.; Smith, A.

10.1101/112276 — developmental biology — Posted on 2017-02-27

41 dMARCH8, a Drosophila ubiquitin ligase, regulates polymodifications of tubulin in the spermiogenic pathway

Gosavi, U.; Nyachhyon, U.; Chatterjee, N.; Pearce, B.; Harvey, R.; Bazinet, C. W.

10.1101/112243 — cell biology — Posted on 2017-02-27

42 Enabling cross-study analysis of RNA-Sequencing data

Wang, Q.; Armenia, J.; Zhang, C.; Penson, A. V.; Reznik, E.; Zhang, L.; Ochoa, A.; Gross, B. E.; Iacobuzio-Donahue, C. A.; Betel, D.; Taylor, B. S.; Gao, J.; Schultz, N.

10.1101/110734 — bioinformatics — Posted on 2017-02-27

43 Integrating tissue specific mechanisms into GWAS summary results

Barbeira, A.; Dickinson, S. P.; Torres, J. M.; Torstenson, E. S.; Zheng, J.; Wheeler, H. E.; Shah, K. P.; Edwards, T.; GTEx Consortium, ; Nicolae, D.; Cox, N. J.; Im, H. K.

10.1101/045260 — genomics — Posted on 2017-02-27

44 Integrative cross tissue analysis of gene expression identifies novel type 2 diabetes genes

Torres, J. M.; Barbeira, A. N.; Bonazzola, R.; Morris, A. P.; Shah, K. P.; Wheeler, H. E.; Bell, G.; Cox, N. J.; Im, H. K.

10.1101/108134 — genetics — Posted on 2017-02-27

45 CAR T Cells Secreting IL18 Augment Antitumor Immunity and Increase T Cell Proliferation and Costimulation

Hu, B.; Ren, J.; Luo, Y.; Keith, B.; Young, R. M.; Scholler, J.; Zhao, Y.; June, C. H.

10.1101/111260 — synthetic biology — Posted on 2017-02-27

46 Environmental cholera (Vibrio cholerae) dynamics in an estuarine system in southern coastal Ecuador

Ryan, S. J.; Stewart-Ibarra, A. M.; Ordonez, E.; Chu, W.; Finkelstein, J. L.; King, C. A.; Escobar, L. E.; Lupone, C.; Heras, F.; Tauzer, E.; Waggoner, E.; James, T. G.; Cardenas, W.; Polhemus, M.

10.1101/110189 — epidemiology — Posted on 2017-02-27

47 The social and spatial ecology of dengue presence and burden during an outbreak in Guayaquil, Ecuador, 2012

Lippi, C. A.; Stewart-Ibarra, A. M.; Muňoz, A. G.; Borbor-Cordova, M. J.; Mejia, R.; Rivero, K.; Castillo, K.; Cardenas, W. B.; Ryan, S. J.

10.1101/112185 — epidemiology — Posted on 2017-02-27

48 Emergence and persistence of the Chikungunya virus East-Central-South-African genotype in Northeast Brazil

Costa, A. C. d.; Theze, J.; Komninakis, S. C. V.; Sanz-Duro, R. L.; Felinto, M. R. L.; Moura, L. C. C.; Barroso, I. M. d. O.; Santos, L. E. C.; Nunes, M. A. d. L.; Moura, A. A.; Lourenco, J.; Deng, X.; Delwart, E. L.; Guimaraes, M. R. d. A. S.; Pybus, O. G.; Sabino, E. C.; Faria, N. R.

10.1101/111948 — epidemiology — Posted on 2017-02-27

49 Rule-based modeling using wildcards

Andrews, S. S.

10.1101/112052 — systems biology — Posted on 2017-02-27

50 Revealing Age-Related Changes of Adult Hippocampal Neurogenesis

Ziebell, F.; Dehler, S.; Martin-Villalba, A.; Marciniak-Czochra, A.

10.1101/112128 — systems biology — Posted on 2017-02-27

51 A microfluidic biodisplay

Volpetti, F.; Petrova, E.; Maerkl, S. J.

10.1101/112110 — synthetic biology — Posted on 2017-02-27

52 Reverse inference via connectivity fingerprinting: task sensitivity, task specificity, and task potency

Chauvin, R.; Mennes, M.; Buitelaar, J.; Beckmann, C.

10.1101/111187 — neuroscience — Posted on 2017-02-27

53 Dynamics of ASC speck formation during skin inflammatory responses in vivo

Kuri Rodriguez, P. S.; Schieber, N.; Thumberger, T.; Wittbrodt, J.; Schwab, Y.; Leptin, M.

10.1101/111542 — immunology — Posted on 2017-02-27

54 Functional genomic analysis of corals from natural CO2-seeps reveal core molecular responses involved in acclimatization to ocean acidification

Kenkel, C.; Moya, A.; Strahl, J.; Humphrey, C.; Bay, L.

10.1101/112045 — genomics — Posted on 2017-02-27

55 STPGA: Selection of training populations with a genetic algorithm

Akdemir, D.

10.1101/111989 — genetics — Posted on 2017-02-27

56 Demographic inference through approximate-Bayesian-computation skyline plots

Navascues, M.; Leblois, R.; Burgarella, C.

10.1101/112060 — evolutionary biology — Posted on 2017-02-27

57 The recombination landscape in wild house mice inferred using population genomic data

Booker, T. R.; Ness, R. W.; Keightley, P. D.

10.1101/112094 — evolutionary biology — Posted on 2017-02-27

58 Signaling architectures that transmit unidirectional information despite retroactivity

Shah, R.; Del Vecchio, D.

10.1101/111971 — biophysics — Posted on 2017-02-27

59 Understanding inhibitor resistance in Mps1 kinase through novel biophysical assays and structures

Hiruma, Y.; Koch, A.; Hazraty, N.; Joosten, R.; Medema, R.; Perrakis, A.

10.1101/112086 — biochemistry — Posted on 2017-02-27

60 Payoff-biased social learning underlies the diffusion of novel extractive foraging traditions in a wild primate

Barrett, B. J.; McElreath, R.; Perry, S.

10.1101/110221 — animal behavior and cognition — Posted on 2017-02-27

61 Post-selection Inference Following Aggregate Level Hypothesis Testing in Large Scale Genomic Data

Heller, R.; Chatterjee, N.; Krieger, A.; Shi, J.

10.1101/058404 — bioinformatics — Posted on 2017-02-27

62 Exhaustively Identifying Cross-Linked Peptideswith a Linear Computational Complexity

Yu, F.; Li, N.; Yu, W.

10.1101/097089 — bioinformatics — Posted on 2017-02-27

63 Genome-wide phenotypic analysis of growth, cell morphogenesis and cellcycle events in Escherichia coli.

Campos, M.; Dobihal, G. S.; Jacobs-Wagner, C.

10.1101/101832 — microbiology — Posted on 2017-02-27

64 MiR-126 impairs the intestinal barrier function via inhibiting S1PR2 mediated activation of PI3K/AKT signaling pathway

Chen, T.; Xue, H.; Lin, R.; Huang, Z.

10.1101/110338 — cell biology — Posted on 2017-02-27

65 MiR-126 impairs the intestinal barrier function via inhibiting S1PR2 mediated activation of PI3K/AKT signaling pathway

Chen, T.; Xue, H.; Lin, R.; Huang, Z.

10.1101/110338 — cell biology — Posted on 2017-02-27

66 TOWARDS COORDINATED INTERNATIONAL SUPPORT OF CORE DATA RESOURCES FOR THE LIFE SCIENCES

Anderson, W.; Apweiler, R.; Bateman, A.; Bauer, G. A.; Berman, H.; Blake, J. A.; Blomberg, N.; Burley, S. K.; Cochrane, G.; Di Francesco, V.; Donohue, T.; Durinx, C.; Game, A.; Green, E.; Gojobori, T.; Goodhand, P.; Hamosh, A.; Hermjakob, H.; Kanehisa, M.; Kiley, R.; McEntyre, J.; McKibbin, R.; Miyano, S.; Pauly, B.; Perrimon, N.; Ragan, M. A.; Richards, G.; Teo, Y.-Y.; Westerfield, M.; Westhof, E.; Lasko, P. F.

10.1101/110825 — scientific communication and education — Posted on 2017-02-27

67 Genomic epidemiology of global Klebsiella pneumoniae carbapenemase (KPC)-producing E. coli

Stoesser, N.; Sheppard, A. E.; Peirano, G.; Anson, L. W.; Pankhurst, L.; Sebra, R.; Phan, H. T.; Kasarskis, A.; Mathers, A. J.; Peto, T. E.; Bradford, P.; Motyl, M.; The Modernising Medical Microbiology Informatics G, ; Walker, A. S.; Crook, D. W.; Pitout, J.

10.1101/111914 — microbiology — Posted on 2017-02-27

68 Free ISG15 as a dimer generates IL-1β-producing CD8α+ dendritic cells at the site of infection

Napolitano, A.; van der Veen, A. G.; Bunyan, M.; Borg, A.; Kjaer, S.; Beling, A.; Knobeloch, K.-P.; Frickel, E.

10.1101/111658 — immunology — Posted on 2017-02-27

69 Novel CRISPR/Cas9 gene drive constructs in Drosophila reveal insights into mechanisms of resistance allele formation and drive efficiency in genetically diverse populations

Champer, J.; Reeves, R.; Oh, S. Y.; Liu, C.; Liu, J.; Clark, A. G.; Messer, P. W.

10.1101/112011 — genetics — Posted on 2017-02-27

70 Decoding temporal interpretation of the morphogen Bicoid in the early Drosophila embryo

Huang, A.; Amourda, C.; Zhang, S.; Tolwinski, N. S.; Saunders, T. E.

10.1101/110841 — developmental biology — Posted on 2017-02-27

71 A fluorogenic nanobody array tag for prolonged single molecule imaging in live cells

Ghosh, R.; Draper, W.; Franklin, J. M.; Shi, Q.; Liphardt, J.

10.1101/111690 — biophysics — Posted on 2017-02-27

72 Estimating the implicit component of visuomotor rotation learning by constraining movement preparation time.

Leow, L.-A.; Marinovic, W.; Gunn, R.; Carroll, T. J.

10.1101/082420 — neuroscience — Posted on 2017-02-26

73 Thermal transients excite neurons through universalintramembrane mechano-electrical effects

Plaksin, M.; Kimmel, E.; Shoham, S.

10.1101/111724 — neuroscience — Posted on 2017-02-26

74 The Reading Frame Surveillance Hypothesis

Gray, J. T.

10.1101/071985 — molecular biology — Posted on 2017-02-26

75 Engineering pulsatile communication in bacterial consortia

Parkin, J.; Hsiao, V.; Murray, R. M.

10.1101/111906 — synthetic biology — Posted on 2017-02-26

76 The emerging British Verticillium longisporum population consists of aggressive Brassica pathogens

Depotter, J.; Rodriguez-Moreno, L.; Thomma, B.; Wood, T.

10.1101/111922 — plant biology — Posted on 2017-02-26

77 No effect of hippocampal lesions on stimulus-response bindings

Henson, R.; Horner, A.; Greve, A.; Cooper, E.; Gregori, M.; Simons, J.; Erzinclioglu, S.; Browne, G.; Kapur, N.

10.1101/111898 — neuroscience — Posted on 2017-02-26

78 A common haplotype lowers SPI1 (PU.1) expression in myeloid cells and delays age at onset for Alzheimer’s disease

Huang, K.-l.; Marcora, E.; Pimenova, A.; Di Narzo, A.; Kapoor, M.; Jin, S. C.; Harari, O.; Bertelsen, S.; Fairfax, B.; Czajkowski, J.; Chouraki, V.; Grenier-Boley, B.; Bellenguez, C.; Deming, Y.; McKenzie, A.; Raj, T.; Renton, A.; Budde, J.; Smith, A.; Fitzpatrick, A.; Bis, J.; DeStefano, A.; Adams, H.; Ikram, M. A.; van der Lee, S.; Del-Aguila, J.; Fernandez, M.; Ibanez, L.; The International Genomics of Alzheimer's Project, ; The Alzheimer's Disease Neuroimaging Initiative, ; Sims, R.; Escott-Price, V.; Mayeux, R.; Haines, J.; Farrer, L.; Pericak-Vance, M.; Lambert, J. C.; van Duijn, C.; L

10.1101/110957 — neuroscience — Posted on 2017-02-26

79 Short DNA sequence patterns accurately identify broadlyactive human enhancers

Colbran, L. L.; Chen, L.; Capra, J. A.

10.1101/111955 — genomics — Posted on 2017-02-26

80 CAR T Cells Secreting IL18 Augment Antitumor Immunity and Increase T Cell Proliferation and Costimulation

Hu, B.; Ren, J.; Luo, Y.; Keith, B.; Young, R. M.; Scholler, J.; Zhao, Y.; June, C. H.

10.1101/111260 — synthetic biology — Posted on 2017-02-26

81 Adaptive and Non-adaptive Responses of Populations to Environmental Change

Coulson, T.; Kendall, B. E.; Barthold, J.; Plard, F.; Schindler, S.; Ozgul, A.; Gaillard, J.-M.

10.1101/090894 — evolutionary biology — Posted on 2017-02-26

82 Costs and benefits of sub-lethal Drosophila C virus infection

Vale, P. F.; Gupta, V.; Stewart, C. O.; Rund, S. S. C.; Monteith, K. M.

10.1101/111930 — evolutionary biology — Posted on 2017-02-26

83 PHESANT: a tool for performing automated phenome scans in UK Biobank

Millard, L.; Davies, N. M.; Gaunt, T.; Davey Smith, G.; Tilling, K.

10.1101/111500 — epidemiology — Posted on 2017-02-26

84 Shorter season options through transplanted fodder beet

Khaembah, E. N.; Maley, S.; Nelson, W.

10.1101/090738 — plant biology — Posted on 2017-02-25

85 On the transdiagnostic nature of peripheral biomarkers in major psychiatric disorders: a systematic review

Pinto, J. V.; Moulin, T. C.; Amaral, O. B.

10.1101/086124 — neuroscience — Posted on 2017-02-25

86 Echo state networks with multiple read-out modules

Laan, A.; Vicente, R.

10.1101/017558 — neuroscience — Posted on 2017-02-25

87 Evolutionary dynamics of male reproductive genes in the Drosophila virilis subgroup

Ahmed-Braimah, Y. H.; Unckless, R. L.; Clark, A. G.

10.1101/111377 — evolutionary biology — Posted on 2017-02-25

88 A Probabilistic Approach To The Diagnosis Of Obstructive Sleep Apnea

Ramnani, R.; Tripathi, A.

10.1101/080515 — biophysics — Posted on 2017-02-25

89 Deconvolution of multiple infections in Plasmodium falciparum from high throughput sequencing data

Zhu, S. J.; Almagro-Garcia, J.; McVean, G.

10.1101/099499 — bioinformatics — Posted on 2017-02-25

90 Laminar organization of encoding and memory reactivation in the parietal cortex

Wilber, A.; Skelin, I.; McNaughton, B. L.

10.1101/110684 — neuroscience — Posted on 2017-02-25

91 Subdomains of the Pol V largest subunit CTD mediate locus-specific RNA-directed DNA methylation

Wendte, J.; Haag, J.; Singh, J.; McKinlay, A.; Pontes, O.; Pikaard, C.

10.1101/111831 — molecular biology — Posted on 2017-02-25

92 Multiplexed confocal and super-resolution fluorescence imaging of cytoskeletal and neuronal synapse proteins

Guo, S.-M.; Veneziano, R.; Gordonov, S.; Li, L.; Park, D.; Kulesa, A. B.; Blainey, P. C.; Cottrell, J. R.; Boyden, E. S.; Bathe, M.

10.1101/111625 — bioengineering — Posted on 2017-02-25

93 Limits on prediction in language comprehension: A multi-lab failure to replicate evidence for probabilistic pre-activation of phonology

Nieuwland, M.; Politzer-Ahles, S.; Heyselaar, E.; Segaert, K.; Darley, E.; Kazanina, N.; Von Grebmer Zu Wolfsthurn, S.; Bartolozzi, F.; Kogan, V.; Ito, A.; Meziere, D.; Barr, D. J.; Rousselet, G.; Ferguson, H. J.; Busch-Moreno, S.; Fu, X.; Tuomainen, J.; Kulakova, E.; Husband, E. M.; Donaldson, D. L.; Kohut, Z.; Rueschemeyer, S.-A.; Huettig, F.

10.1101/111807 — neuroscience — Posted on 2017-02-25

94 Comparing arenavirus infection patterns in experimentally and naturally infected rodent hosts

Marien, J.; Borremans, B.; Gryseels, S.; Vanden Broecke, B.; Becker-Ziaja, B.; Makundi, R.; Massawe, A.; Reijniers, J.; Leirs, H.

10.1101/111732 — immunology — Posted on 2017-02-25

95 Distorted Biologic Mechanisms in Evolution and Model Extrapolation

Diaz Ochoa, J. G.

10.1101/111666 — biophysics — Posted on 2017-02-25

96 Constraint-based modeling identifies new putative targets to fight colistin-resistant A. baumannii infections.

Presta, L.; Bosi, E.; Mansouri, L.; Dijkshoorn, L.; Fani, R.; Fondi, M.

10.1101/111765 — systems biology — Posted on 2017-02-25

97 Thermal transients excite neurons through universalintramembrane mechano-electrical effects

Plaksin, M.; Kimmel, E.; Shoham, S.

10.1101/111724 — neuroscience — Posted on 2017-02-25

98 A unifying mechanism for the biogenesis of prokaryotic membrane proteins co-operatively integrated by the Sec and Tat pathways

Palmer, T.; Tooke, F. J.; Babot, M.; Chandra, G.; Buchanan, G.

10.1101/111781 — microbiology — Posted on 2017-02-25

99 An alternative STAT signaling pathway acts in antiviral immunity in Caenorhabditis elegans

Tanguy, M.; Veron, L.; Stempor, P.; Ahringer, J.; Sarkies, P.; Miska, E. A.

10.1101/110940 — immunology — Posted on 2017-02-25

100 Bacterial tail anchors can target to the mitochondrial outer membrane

Bal, G. L.; Keskin, A.; Seferoglu, A. B.; Dunn, C. D.

10.1101/111716 — evolutionary biology — Posted on 2017-02-25

101 The reactivation of reprogramming factors within human blastocysts by using ATP contribute to human blastocyst development

Takemura, T.; Okabe, M.

10.1101/111708 — developmental biology — Posted on 2017-02-25

102 Releasing potential power of terpene synthases by a robust precursor supply platform

Bian, G.; Han, Y.; Hou, A.; Yuan, Y.; Liu, X.; Deng, Z.; Liu, T.

10.1101/105247 — biochemistry — Posted on 2017-02-25

103 Inferring individual-level processes from population-level patterns in cultural evolution

Kandler, A.; Wilder, B.; Fortunato, L.

10.1101/111575 — evolutionary biology — Posted on 2017-02-25

104 Community selection increases biodiversity effects

van Moorsel, S. J.; Hahl, T.; Wagg, C.; De Deyn, G. B.; Flynn, D. F. B.; Yadav, V.; Zuppinger-Dingley, D.; Schmid, B.

10.1101/111617 — ecology — Posted on 2017-02-25

105 Evidence-based gene models for structural and functional annotations of the oil palm genome

Lim, C. K.; Tatarinova, T. V.; Rosli, R.; Amiruddin, N.; Azizi, N.; Halim, M. A. A.; Shazana, N.; Sanusi, N. M.; Nagappan, J.; Ponomarenko, P.; Triska, M.; Solovyev, V.; Firdaus-Raih, M.; Sambanthamurthi, R.; Murphy, D.; Low Eng Ti, L.

10.1101/111120 — bioinformatics — Posted on 2017-02-25

106 BECon: A tool for interpreting DNA methylation findings from blood in the context of brain

Edgar, R. D.; Jones, M. J.; Meaney, M. J.; Turecki, G.; Kobor, M. S.

10.1101/111609 — genetics — Posted on 2017-02-25

107 Clay-induced DNA double-strand breaks underlay genetic diversity, antibiotic resistance and molecular basis of asbestosis

Rodriguez-Rojas, A.; Radek, R.; Rodriguez-Beltran, J.; Blazquez, J.; Rolff, J.

10.1101/111534 — evolutionary biology — Posted on 2017-02-25

108 MAGIC: A diffusion-based imputation method reveals gene-gene interactions in single-cell RNA-sequencing data

van Dijk, D.; Nainys, J.; Sharma, R.; Kathail, P.; Carr, A. J.; Moon, K. R.; Mazutis, L.; Wolf, G.; Krishnaswamy, S.; Pe'er, D.

10.1101/111591 — bioinformatics — Posted on 2017-02-25

109 Controlling cell shape on hydrogels using lift-off patterning

Moeller, J.; Denisin, A. K.; Sim, J. Y.; Wilson, R. E.; Ribeiro, A. J. S.; Pruitt, B. L.

10.1101/111195 — bioengineering — Posted on 2017-02-24

110 The Sequence of 1504 Mutants in the Model Rice Variety Kitaake Facilitates Rapid Functional Genomic Studies

Li, G.; Jain, R.; Chern, M.; Pham, N. T.; Martin, J. A.; Wei, T.; Schackwitz, W. S.; Lipzen, A. M.; Duong, P. Q.; Jones, K. C.; Jiang, L.; Ruan, D.; Bauer, D.; Peng, Y.; Barry, K. W.; Schmutz, J.; Ronald, P. C.

10.1101/111237 — plant biology — Posted on 2017-02-24

111 p53 dynamically directs TFIID assembly on target gene promoters

Coleman, R. A.; Qiao, Z.; Singh, S. K.; Peng, C. S.; Cianfrocco, M.; Zhang, Z.; Piasecka, A.; Aldeborgh, H.; Basishvili, G.; Liu, W.-L.

10.1101/083014 — biochemistry — Posted on 2017-02-24

112 High-throughput live-imaging of embryos in microwell arrays using a modular, inexpensive specimen mounting system

Donoughe, S.; Kim, C.; Extavour, C.

10.1101/111583 — developmental biology — Posted on 2017-02-24

113 A recurrence based approach for validating structural variation using long-read sequencing technology.

Zhao, X.; Weber, A. M.; Mills, R. E.

10.1101/105817 — bioinformatics — Posted on 2017-02-24

114 Genomic insights into adaptive divergence and speciation between malaria vectors of the Anopheles nili group

Kamdem, C.; Fouet, C.; Gamez, S.; White, B. J.

10.1101/068239 — evolutionary biology — Posted on 2017-02-24

115 How to name and classify your phage: an informal guide

Adriaenssens, E. M.; Brister, J. R.

10.1101/111526 — microbiology — Posted on 2017-02-24

116 Oxygen consumption rate in Gasterosteus aculeatus-Schistocephalus solidus system from a non-migratory naturally infected population.

Tarallo, A.; D'Onofrio, G.; Agnisola, C.

10.1101/111112 — zoology — Posted on 2017-02-24

117 Beyond the limitation of randomized controlled trials (RCTs)-current drug repositioning by using human induced pluripotent stem (iPS) cells technology-

Okabe, M.; Reproductive Medicine Institute Japan,

10.1101/111435 — scientific communication and education — Posted on 2017-02-24

118 Poly(A)-ClickSeq: click-chemistry for next-generation 3´-end sequencing without RNA enrichment or fragmentation

Routh, A.; Ji, P.; Jaworski, E.; Xia, Z.; Li, W.; Wagner, E. J.

10.1101/109272 — molecular biology — Posted on 2017-02-24

119 Stable association of a Drosophila-derived microbiota with its animal partner and the nutritional environment upon transfer between populations and generations

Tefit, M.; Gillet, B.; Joncour, P.; Hughes, S.; Leulier, F.

10.1101/111492 — microbiology — Posted on 2017-02-24

120 Eelgrass leaf surface microbiomes are locally variable and highlycorrelated with epibiotic eukaryotes

Bengtsson, M. M.; Buhler, A.; Brauer, A.; Dahlke, S.; Schubert, H.; Blindow, I.

10.1101/111559 — microbiology — Posted on 2017-02-24

121 Evolutionary dynamics of male reproductive genes in the Drosophila virilis subgroup

Ahmed-Braimah, Y. H.; Unckless, R. L.; Clark, A. G.

10.1101/111377 — evolutionary biology — Posted on 2017-02-24

122 Widespread impact of DNA replication on mutational mechanisms in cancer

Tomkova, M.; Tomek, J.; Kriaucionis, S.; Schuster-Boeckler, B.

10.1101/111302 — cancer biology — Posted on 2017-02-24

123 MRIQC: Predicting Quality in Manual MRI Assessment Protocols Using No-Reference Image Quality Measures

Esteban, O.; Birman, D.; Schaer, M.; Koyejo, O. O.; Poldrack, R. A.; Gorgolewski, K. J.

10.1101/111294 — bioinformatics — Posted on 2017-02-24

124 Improved LC-MS chromatographic alignment increases the accuracy of label-free quantitative proteomics: Comparison of spectral counting versus ion intensity-based proteomic quantification strategies.

Ng, D. H. J.; Humphries, J. D.; Selley, J. N.; Warwood, S.; Knight, D.; Byron, A.; Humphries, M. J.

10.1101/111476 — bioinformatics — Posted on 2017-02-24

125 Conserved changes in secondary structure and aggregation properties of in vitro evolved proteins for thermo stability

Kundharapu, S.

10.1101/111443 — bioinformatics — Posted on 2017-02-24

126 16GT: a fast and sensitive variant caller using a 16-genotype probabilistic model

Luo, R.; Schatz, M. C.; Salzberg, S.

10.1101/111393 — bioinformatics — Posted on 2017-02-24

127 PGC-1α coordinates with Bcl-2 to control cell cycle in U251 cells through reducing ROS

Yao, K.; Fu, X.; Du, X.; Li, Y.; Han, B.; Chen, Z.; Yang, S.; Wei, R.; Zhou, J.; Cui, Q.

10.1101/111567 — biochemistry — Posted on 2017-02-24

128 α-tubulin acetylation and detyrosination correlate with starvation-induced autophagy in tobacco cells

Lytvyn, D.; Yemets, A.; Blume, Y.

10.1101/111484 — plant biology — Posted on 2017-02-24

129 Modern machine learning far outperforms GLMs at predicting spikes

Benjamin, A. S.; Fernandes, H. L.; Tomlinson, T.; Ramkumar, P.; VerSteeg, C.; Miller, L.; Kording, K. P.

10.1101/111450 — neuroscience — Posted on 2017-02-24

130 Accumulation of sensory evidence is impaired in Parkinson’s disease with visual hallucinations

O'Callaghan, C.; Hall, J.; Tomassini, A.; Muller, A.; Walpola, I.; Moustafa, A.; Shine, J.; Lewis, S.

10.1101/111278 — neuroscience — Posted on 2017-02-24

131 A genome-wide interactome of DNA-associated proteins in the human liver

Ramaker, R. C.; Savic, D.; Hardigan, A. A.; Newberry, K.; Cooper, G. M.; Myers, R. M.; Cooper, S. J.

10.1101/111385 — genomics — Posted on 2017-02-24

132 RNA Stores Tau Reversibly in Complex Coacervates

Zhang, X.; Eschmann, N. E.; Lin, Y.; Zhou, H.; Rauch, J.; Hernandez, I.; Guzman, E.; Kosik, K. S.; Han, S.

10.1101/111245 — biophysics — Posted on 2017-02-24

133 Flexibility to contingency changes distinguishes habitual and goal-directed strategies in humans

Lee, J.; Keramati, M.

10.1101/107078 — animal behavior and cognition — Posted on 2017-02-24

134 The high burden of dengue and chikungunya in southern coastal Ecuador: Epidemiology, clinical presentation, and phylogenetics from a prospective study in Machala in 2014 and 2015

Stewart-Ibarra, A. M.; Kenneson, A.; King, C. A.; Abbott, M.; Barbachano-Guerrero, A.; Beltran-Ayala, E.; Borbor-Cordova, M. J.; Cardenas, W. B.; Cueva, C.; Finkelstein, J. L.; Lupone, C. D.; Jarman, R. G.; Maljkovic Berry, I.; Mehta, S.; Polhemus, M.; Silva, M.; Ryan, S. J.; Endy, T. P.

10.1101/102004 — epidemiology — Posted on 2017-02-24

135 Functional Connectivity Dynamics of the Resting State across the Human Adult Lifespan

Battaglia, D.; Thomas, B.; Hansen, E. C.; Chettouf, S.; Daffertshofer, A.; McIntosh, A. R.; Zimmermann, J.; Ritter, P.; Jirsa, V.

10.1101/107243 — neuroscience — Posted on 2017-02-24

136 Learning place cells, grid cells and invariances: A unifying model

Weber, S. N.; Sprekeler, H.

10.1101/102525 — neuroscience — Posted on 2017-02-24

137 Dynactin has two antagonistic regulatory domains and exerts opposing effects on dynein motility

Kobayashi, T.; Miyashita, T.; Murayama, T.; Toyoshima, Y. Y.

10.1101/110775 — biophysics — Posted on 2017-02-24

138 MEACA: efficient gene-set interpretation of expression data using mixed models

Zhuo, B.; Jiang, D.

10.1101/106781 — bioinformatics — Posted on 2017-02-24

139 Family history and APOE4 risk for Alzheimer’s Disease impact the neural correlates of episodic memory by early midlife

Rajah, M. N.; Wallace, L. M. K.; Ankudowich, E.; Yu, E.; Swierkot, A.; Patel, R.; Chakravarty, M.; Naumova, D.; Pruessner, J. C.; Joober, R.; Gauthier, S.; Pasvanis, S.

10.1101/102699 — neuroscience — Posted on 2017-02-23

140 Immune Loss as a Driver of Coexistence During Host-Phage Coevolution

Weissman, J. L.; Holmes, R.; Barrangou, R.; Moineau, S.; Fagan, W. F.; Levin, B.; Johnson, P. L.

10.1101/105908 — ecology — Posted on 2017-02-23

141 Payoff-biased social learning underlies the diffusion of novel extractive foraging traditions in a wild primate

Barrett, B. J.; McElreath, R.; Perry, S.

10.1101/110221 — animal behavior and cognition — Posted on 2017-02-23

142 Predictive representations can link model-based reinforcement learning to model-free mechanisms

Russek, E. M.; Momennejad, I.; Botvinick, M. M.; Gershman, S. J.; Daw, N. D.

10.1101/083857 — neuroscience — Posted on 2017-02-23

143 Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and brain anatomy

Warrier, V.; Grasby, K.; Uzefovsky, F.; Toro, R.; Smith, P.; Chakrabarti, B.; Khadake, J.; Litterman, N.; Hottenga, J.-J.; Lubke, G.; Boomsma, D. I.; Martin, N. G.; Hatemi, P. K.; Medland, S. E.; Hinds, D. A.; Bourgeron, T.; Baron-Cohen, S.

10.1101/081844 — genetics — Posted on 2017-02-23

144 The E. coli molecular phenotype under different growth conditions

Caglar, M. U.; Houser, J. R.; Barnhart, C. S.; Boutz, D. R.; Carroll, S. M.; Dasgupta, A.; Lenoir, W. F.; Smith, B. L.; Sridhara, V.; Sydykova, D. K.; Wood, D. V.; Marx, C. J.; Marcotte, E. M.; Barrick, J. E.; Wilke, C. O.

10.1101/082032 — bioinformatics — Posted on 2017-02-23

145 A Spatially Localized Architecture for Fast and Modular Computation at the Molecular Scale

Chatterjee, G.; Dalchau, N.; Muscat, R. A.; Phillips, A.; Seelig, G.

10.1101/110965 — synthetic biology — Posted on 2017-02-23

146 The Sequence of 1504 Mutants in the Model Rice Variety Kitaake Facilitates Rapid Functional Genomic Studies

10.1101/111237 — plant biology — Posted on 2017-02-23

147 TOWARDS A GLOBAL SUPPORT OF CORE DATA RESOURCES FOR THE LIFE SCIENCES

10.1101/110825 — scientific communication and education — Posted on 2017-02-23

148 Preprinting Microbiology

Schloss, P. D.

10.1101/110858 — microbiology — Posted on 2017-02-23

149 Adaptation of the FADS gene family in Europe: Variation across time, geography and subsistence

Ye, K.; Gao, F.; Wang, D.; Bar-Yosef, O.; Keinan, A.

10.1101/111229 — genomics — Posted on 2017-02-23

150 Profiling metabolic flux modes by enzyme cost reveals variable trade-offs between growth and yield in Escherichia coli.

Wortel, M. T.; Noor, E.; Ferris, M.; Bruggeman, F. J.; Liebermeister, W.

10.1101/111161 — systems biology — Posted on 2017-02-23

151 A non-invasive, quantitative study of broadband spectral responses in human visual cortex

Kupers, E. R.; Wang, H. X.; Amano, K.; Kay, K. N.; Heeger, D. J.; Winawer, J.

10.1101/108993 — neuroscience — Posted on 2017-02-23

152 The genomic architecture of flowering time varies across space and time in Mimulus guttatus

Monnahan, P.; Kelly, J. K.

10.1101/111203 — genomics — Posted on 2017-02-23

153 Genome-wide analyses of empathy and systemizing: correlations with psychiatric conditions, psychological traits, and education

Warrier, V.; Toro, R.; Chakrabarti, B.; Litterman, N.; Hinds, D.; Bourgeron, T.; Baron-Cohen, S.

10.1101/050682 — genomics — Posted on 2017-02-23

154 TeachEnG: a Teaching Engine for Genomics

Kim, M.; Kim, Y.; Qian, L.; Song, J.

10.1101/111054 — bioinformatics — Posted on 2017-02-23

155 Mobility as the purpose of postural control

Le Mouel, C.; Brette, R.

10.1101/110932 — neuroscience — Posted on 2017-02-23

156 Foreground Enhancement and Background Suppression in Human Early Visual System During Passive Perception of Natural Images

Papale, P.; Leo, A.; Cecchetti, L.; Handjaras, G.; Kay, K.; Pietrini, P.; Ricciardi, E.

10.1101/109496 — neuroscience — Posted on 2017-02-23

157 Observation of histone nuclear import in living cells: implications in the processing of newly synthesised H3.1 & H4

Bowman, A. J.; Smith, M. J.

10.1101/111096 — molecular biology — Posted on 2017-02-23

158 CLEAR: Composition of Likelihoods for Evolve And Resequence Experiments

Iranmehr, A.; Akbari, A.; Schlotterer, C.; Bafna, V.

10.1101/080085 — evolutionary biology — Posted on 2017-02-23

159 The spatial and metabolic basis of colony size variation

Chacon, J.; Moebius, W.; Harcombe, W.

10.1101/111153 — ecology — Posted on 2017-02-23

160 Real-time chromatin dynamics at the single gene levelduring transcription activation

Germier, T.; Kocanova, S.; Walther, N.; Bancaud, A.; Shaban, H. A.; Sellou, H.; Politi, A.; Ellenberg, J.; Gallardo, F.; Bystricky, K.

10.1101/111179 — cell biology — Posted on 2017-02-23

161 Structurally distinct oligomers of islet amyloid polypeptide mediate toxic and non-toxic membrane poration

Birol, M.; Kumar, S.; Rhoades, E.; Miranker, A. D.

10.1101/095158 — cell biology — Posted on 2017-02-23

162 Human PGBD5 DNA transposase promotes site-specific oncogenic mutations in rhabdoid tumors

Henssen, A.; Koche, R.; Zhuang, J.; Jiang, E.; Reed, C.; Eisenberg, A.; Still, E.; MacArthur, I.; Rodriguez-Fos, E.; Gonzalez, S.; Puiggros, M.; Blackford, A.; Mason, C.; De Stanchina, E.; Gonen, M.; Emde, A.-K.; Shah, M.; Arora, K.; Reeves, C.; Socci, N.; Perlman, E.; Antonescu, C.; Roberts, C.; Steen, H.; Mullen, E.; Jackson, S.; Torrents, D.; Weng, Z.; Armstrong, S.; Kentsis, A.

10.1101/111138 — cancer biology — Posted on 2017-02-23

163 EXTRACT 2.0: text-mining-assisted interactive annotation of biomedical named entities and ontology terms

Pafilis, E.; Berzins, R.; Jensen, L. J.

10.1101/111088 — bioinformatics — Posted on 2017-02-23

164 Literature Consistency of Bioinformatics Sequence Databases is Effective for Assessing Record Quality

Bouadjenek, M. R.; Verspoor, K.; Zobel, J.

10.1101/101873 — bioinformatics — Posted on 2017-02-23

165 Dissociable effects of surprising rewards on learning and memory

Rouhani, N.; Norman, K. A.; Niv, Y.

10.1101/111070 — animal behavior and cognition — Posted on 2017-02-23

166 A practical guide for inferring reliable dominance hierarchies and estimating their uncertainty

Sanchez-Tojar, A.; Schroeder, J.; Farine, D. R.

10.1101/111146 — animal behavior and cognition — Posted on 2017-02-23

167 The recombinase protein is a torque sensitive molecular switch.

Atwell, S. X.; Dupont, A.; Migliozzi, D.; Viovy, J.-L.; Cappello, G.

10.1101/111104 — biophysics — Posted on 2017-02-23

168 MetaCherchant - an algorithm for analyzing genomicenvironment of antibiotic resistance genein gut microbiota

Olekhnovich, E. I.; Vasilyev, A. T.; Ulyantsev, V. I.; Tyakht, A. V.

10.1101/106161 — bioinformatics — Posted on 2017-02-23

169 Sensitivity of Neurons in the Middle Temporal Area of Marmoset Monkeys to Random Dot Motion

Chaplin, T. A.; Allitt, B. J.; Hagan, M. A.; Price, N. S. C.; Rajan, R.; Rosa, M. G. P.; Lui, L. L.

10.1101/104117 — neuroscience — Posted on 2017-02-23

170 TeachEnG: a Teaching Engine for Genomics

Kim, M.; Kim, Y.; Qian, L.; Song, J.

10.1101/111054 — bioinformatics — Posted on 2017-02-23

171 AspWood: High-spatial-resolution transcriptome profiles reveal uncharacterized modularity of wood formation in Populus tremula

Sundell, D.; Street, N. R.; Kumar, M.; Mellerowicz, E. J.; Kucukoglu, M.; Johnsson, C.; Kumar, V.; Mannapperuma, C.; Delhomme, N.; Nilsson, O.; Tuominen, H.; Pesquet, E.; Fischer, U.; Niittyla, T.; Sundberg, B.; Hvidsten, T. R.

10.1101/094060 — plant biology — Posted on 2017-02-23

172 Genetic Architecture and Molecular Networks Underlying Leaf Thickness in Desert-Adapted Tomato Solanum pennellii

Coneva, V.; Frank, M. H.; de Luis Balaguer, M. A.; Li, M.; Sozzani, R.; Chitwood, D. H.

10.1101/111005 — plant biology — Posted on 2017-02-22

173 Correspondence of Resting State and Task Brain Networks: Reproducibility and New Insights

Nickerson, L. D.

10.1101/111021 — neuroscience — Posted on 2017-02-22

174 Do maternal antibodies facilitate hemagglutinin imprinting to influenza A viruses encountered early in childhood?

Gostic, K. M.; Ambrose, M.; Worobey, M.; Lloyd-Smith, J. O.

10.1101/110981 — immunology — Posted on 2017-02-22

175 Evaluating the clinical validity of gene-disease associations: an evidence-based framework developed by the Clinical Genome Resource

Strande, N. T.; Riggs, E. R.; Buchanan, A. H.; Ceyhan-Birsoy, O.; Dwight, S. T.; Dwight, S. S.; Goldstein, J. L.; Ghosh, R.; Seifert, B. A.; Sneddon, T. P.; Wright, M. W.; Milko, L. V.; Giovanni, M. A.; Murray, M. F.; O'Daniel, J. M.; Ramos, E. M.; Santani, A. B.; Scott, A. F.; Cherry, J. M.; Plon, S. E.; Rehm, H. L.; Martin, C. L.; Berg, J. S.

10.1101/111039 — genetics — Posted on 2017-02-22

176 W2RAP: a pipeline for high quality, robust assemblies of large complex genomes from short read data

Clavijo, B.; Garcia Accinelli, G.; Wright, J.; Heavens, D.; Barr, K.; Yanes, L.; Di Palma, F.

10.1101/110999 — bioinformatics — Posted on 2017-02-22

177 The evolution of queen control over worker reproduction in the social Hymenoptera

Olejarz, J.; Veller, C.; Nowak, M. A.

10.1101/110973 — evolutionary biology — Posted on 2017-02-22

178 An allosteric theory of transcription factor induction

Razo-Mejia, M.; Barnes, S. L.; Belliveau, N. M.; Chure, G.; Einav, T.; Phillips, R.

10.1101/111013 — biophysics — Posted on 2017-02-22

179 mTORC1 in AGRP neurons integrates exteroceptive and interoceptive food-related cues in the modulation of adaptive energy expenditure in mice

Burke, L.; Darwish, T.; Cavanaugh, A.; Virtue, S.; Roth, E.; Moro, J.; Liu, S.-M.; Xia, J.; Dalley, J.; Burling, K.; Chua, S.; Vidal-Puig, T.; Schwartz, G.; Blouet, C.

10.1101/110544 — neuroscience — Posted on 2017-02-22

180 Environmental cholera (Vibrio cholerae) dynamics in an estuarine system in southern coastal Ecuador

Ryan, S. J.; Stewart-Ibarra, A. M.; Ordonez, E.; Chu, W.; Finkelstein, J. L.; King, C. A.; Escobar, L. E.; Lupone, C.; Heras, F.; Tauzer, E.; Wagonner, E.; James, T. G.; Cardenas, W.; Polhemus, M.

10.1101/110189 — epidemiology — Posted on 2017-02-22

181 Fitting mechanistic epidemic models to data: a comparison of simple Markov chain Monte Carlo approaches

Li, M.; Dushoff, J.; Bolker, B. M.

10.1101/110767 — epidemiology — Posted on 2017-02-22

182 From Sequence to Function: Coevolving Amino Acids Encode Structural and Functional Domains

Granata, D.; Ponzoni, L.; Micheletti, C.; Carnevale, V.

10.1101/109397 — bioinformatics — Posted on 2017-02-22

183 An attempt to replicate a dissociation between syntax and semantics during sentence comprehension reported by Dapretto & Bookheimer (1999, Neuron)

Siegelman, M.; Mineroff, Z.; Blank, I.; Fedorenko, E.

10.1101/110791 — neuroscience — Posted on 2017-02-22

184 Genetic variation for mitochondrial function in the New Zealand freshwater snail Potamopyrgus antipodarum

Sharbrough, J.; Cruise, J. L.; Beetch, M.; Enright, N. M.; Neiman, M.

10.1101/087155 — evolutionary biology — Posted on 2017-02-22

185 The risk of sustained sexual transmission of Zika is underestimated

Allard, A.; Althouse, B. M.; Hebert-Dufresne, L.; Scarpino, S. V.

10.1101/090324 — epidemiology — Posted on 2017-02-22

186 A Mixture Copula Bayesian Network Model for Multimodal Genomic Data

Zhang, Q.; Shi, X.

10.1101/110288 — bioinformatics — Posted on 2017-02-22

187 Scalable genomics: from raw data to aligned reads on Apache YARN

Versaci, F.; Pireddu, L.; Zanetti, G.

10.1101/071092 — bioinformatics — Posted on 2017-02-22

188 GCalignR: An R package for aligning Gas-Chromatography data

Ottensmann, M.; Stoffel, M. A.; Hoffman, J. I.

10.1101/110494 — animal behavior and cognition — Posted on 2017-02-22

189 Locomotion enhances neural encoding of visual stimuli in mouse V1

Dadarlat, M. C.; Stryker, M. P.

10.1101/102673 — neuroscience — Posted on 2017-02-22

190 Fitting mechanistic epidemic models to data: a comparison of simple Markov chain Monte Carlo approaches

Li, M.; Dushoff, J.; Bolker, B. M.

10.1101/110767 — epidemiology — Posted on 2017-02-22

191 Comparative insights to the transportome of Nosema: a genus of parasitic microsporidians

Chetia, H.; Kabiraj, D.; Sharma, S.; Bora, U.

10.1101/110809 — bioinformatics — Posted on 2017-02-22

192 Locomotion induces stimulus-specific response enhancementin adult visual cortex

Kaneko, M.; Fu, Y.; Stryker, M. P.

10.1101/109660 — neuroscience — Posted on 2017-02-22

193 Mitochondrial impairment and rescue in riboflavin responsive neuropathy

Manole, A.; Jaunmuktane, Z.; Hargreaves, I.; Pandraud, A.; Salpietro, V.; Pope, S.; Ludtmann, M. H. R.; Horga, A.; Renata, R. S.; Li, A.; Ashokkumar, B.; Lourenco, C. M.; Heales, S.; Horvath, R.; Chinnery, P. F.; Toro, C.; Singleton, A. B.; Jacques, T. S.; Abramov, A. Y.; Muntoni, F.; Hanna, M. G.; Reilly, M. M.; Revesz, T.; Kullmann, D. M.; Jepson, J. E. C.; Houlden, H.

10.1101/110890 — neuroscience — Posted on 2017-02-22

194 Functional Connectivity Between Somatosensory and Motor Brain Areas Predicts Individual Differences in Motor Learning by Observing

McGregor, H. R.; Gribble, P. L.

10.1101/110924 — neuroscience — Posted on 2017-02-22

195 Gal4 activation domain 9aaTAD could be inactivated by adjacent mini-inhibitory domain and reactivated by distal re-activation domain

Piskacek, M.; Havelka, M.; Rezacova, M.; Knight, A.

10.1101/110882 — molecular biology — Posted on 2017-02-22

196 Novel blood pressure locus and gene discovery using GWAS and expression datasets from blood and the kidney

International Consortium for Blood Pressure GWAS, ; Ehret, G.; Wain, L.

10.1101/110833 — genomics — Posted on 2017-02-22

197 The monoplastidic bottleneck in algae and plant evolution

de Vries, J.; Gould, S. B.

10.1101/109975 — evolutionary biology — Posted on 2017-02-22

198 HIV population-level adaptation can rapidly diminish the impact of a partially effective vaccine

Herbeck, J.; Peebles, K.; Edlefsen, P.; Rolland, M.; Murphy, J.; Gottlieb, G.; Abernethy, N.; Mullins, J.; Mittler, J.; Goodreau, S.

10.1101/110783 — evolutionary biology — Posted on 2017-02-22

199 Decoding temporal interpretation of the morphogen Bicoid in the early Drosophila embryo

Huang, A.; Amourda, C.; Zhang, S.; Tolwinski, N. S.; Saunders, T. E.

10.1101/110841 — developmental biology — Posted on 2017-02-22

200 Anoxia-Induced VEGF-Release from Rat Cardiomyocites Promotes VascularDifferentiation of Human Mesenchymal Stem Cells.

Gutierrez_Lanza, R.; Campa, V. M.

10.1101/110908 — cell biology — Posted on 2017-02-22

201 Dynactin has two antagonistic regulatory domains and exerts opposing effects on dynein motility

Kobayashi, T.; Miyashita, T.; Murayama, T.; Toyoshima, Y. Y.

10.1101/110775 — biophysics — Posted on 2017-02-22

202 Strategic exploration in human adaptive control

Schulz, E.; Klenske, E.; Bramley, N.; Speekenbrink, M.

10.1101/110486 — animal behavior and cognition — Posted on 2017-02-22

203 Resolving Rapid Radiations Within Angiosperm Families Using Anchored Phylogenomics

Leveille-Bourret, E.; Starr, J. R.; Ford, B. A.; Lemmon, E. M.; Lemmon, A. R.

10.1101/110296 — plant biology — Posted on 2017-02-22

204 The Pax9/Wnt pathway regulates secondary palate formation in mice

Jia, S.; Zhou, J.; Fanelli, C.; Wee, Y.; Bonds, J.; Schneider, P.; Mues, G.; D'Souza, R. N.

10.1101/110692 — developmental biology — Posted on 2017-02-22

205 Modeling heterogeneous populations using Boolean networks

Ross, B. C.; Boguslav, M.; Weeks, H.; Costello, J.

10.1101/110817 — systems biology — Posted on 2017-02-22

206 Low Dimensional Activity in Spiking Neuronal Networks

Waernberg, E.; Kumar, A.

10.1101/109900 — neuroscience — Posted on 2017-02-22

207 Granatum: a graphical single-cell RNA-seq analysis pipeline for genomics scientists

Zhu, X.; Wolfgruber, T.; Tasato, A.; Garmire, L.

10.1101/110759 — bioinformatics — Posted on 2017-02-22

208 Cas9-Assisted Targeting of CHromosome segments (CATCH) for targeted nanopore sequencing and optical genome mapping

Gabrieli, T.; Sharim, H.; Michaeli, Y.; Ebenstein, Y.

10.1101/110163 — genomics — Posted on 2017-02-22

209 Consensus rank orderings of molecular fingerprints illustrate the most genuine similarities between marketed drugs and small endogenous human metabolites, but highlight exogenous natural products as the most important natural drug transporter substrates. bioRxiv version.

O'Hagan, S.; Kell, D. B.

10.1101/110437 — pharmacology and toxicology — Posted on 2017-02-22

210 Biologically plausible learning in recurrent neural networks reproduces neural dynamics observed during cognitive tasks

Miconi, T.

10.1101/057729 — neuroscience — Posted on 2017-02-22

211 mTORC1 in AGRP neurons integrates exteroceptive and interoceptive food-related cues in the modulation of adaptive energy expenditure in mice

Blouet, C.; Burke, L.; Darwish, T.; Cavanaugh, A.; Virtue, S.; Roth, E.; Moro, J.; Liu, S.-M.; Xia, J.; Dalley, J.; Burling, K.; Chua, S.; Vidal-Puig, T.; Schwartz, G.

10.1101/110544 — neuroscience — Posted on 2017-02-22

212 Developmental cognitive neuroscience using Latent Change Score models: A tutorial and applications

Kievit, R.; Brandmaier, A.; Ziegler, G.; van Harmelen, A.-L.; Mooij, S. d.; Moutoussis, M.; Goodyer, I.; Bullmore, E.; Jones, P.; Fonagy, P.; NSPN Consortium, ; Lindenberger, U.; Dolan, R.

10.1101/110429 — neuroscience — Posted on 2017-02-22

213 Evolution and manipulation of vector host choice

Gandon, S.

10.1101/110577 — evolutionary biology — Posted on 2017-02-22

214 Modeling mechanical interactions in growing populations of rod-shaped bacteria

Winkle, J. J.; Igoshin, O. A.; Bennett, M. R.; Josić, K.; Ott, W.

10.1101/110742 — synthetic biology — Posted on 2017-02-21

215 Resolving Rapid Radiations Within Families Using Anchored Phylogenomics

Leveille-Bourret, E.; Starr, J. R.; Ford, B. A.; Lemmon, E. M.; Lemmon, A. R.

10.1101/110296 — plant biology — Posted on 2017-02-21

216 Heritability of the structures and 13C fractionation in tomato leaf wax alkanes: a genetic model system to inform paleoenvironmental reconstructions

Bender, A. L. D.; Chitwood, D. H.; Bradley, A. S.

10.1101/110718 — plant biology — Posted on 2017-02-21

217 The Sorghum bicolor reference genome: improved assembly and annotations, a transcriptome atlas, and signatures of genome organization

McCormick, R. F.; Truong, S. K.; Sreedasyam, A.; Jenkins, J.; Shu, S.; Sims, D.; Kennedy, M.; Amirebrahimi, M.; Weers, B.; McKinley, B.; Mattison, A.; Morishige, D.; Grimwood, J.; Schmutz, J.; Mullet, J.

10.1101/110593 — plant biology — Posted on 2017-02-21

218 Recurrent inhibition in striatum enables transfer of time-flexible skills to basal ganglia

Murray, J. M.; Escola, G. S.

10.1101/110072 — neuroscience — Posted on 2017-02-21

219 Soil classification predicts differences in prokaryotic communities across a range of geographically distant soils once pH is accounted for

Kaminsky, R.; Trouche, B.; Morales, S. E.

10.1101/110726 — microbiology — Posted on 2017-02-21

220 GRIDSS: sensitive and specific genomic rearrangement detection using positional de Bruijn graph assembly

Cameron, D. L.; Schroeder, J.; Penington, J. S.; Do, H.; Molania, R.; Dobrovic, A.; Speed, T. P.; Papenfuss, A. T.

10.1101/110387 — bioinformatics — Posted on 2017-02-21

221 Structural covariance networks in children with autism or ADHD

Bethlehem, R. A. I.; Romero-Garcia, R.; Mak, E.; Bullmore, E.; Baron-Cohen, S.

10.1101/110643 — neuroscience — Posted on 2017-02-21

222 Understanding Tissue-specific Gene Regulation

Sonawane, A. R.; Platig, J.; Fagny, M.; Chen, C.-Y.; Paulson, J. N.; Lopes-Ramos, C. M.; DeMeo, D. L.; Quackenbush, J.; Glass, K.; Kuijjer, M. L.

10.1101/110601 — genomics — Posted on 2017-02-21

223 Reversed graph embedding resolves complex single-cell developmental trajectories

Qiu, X.; Mao, Q.; Tang, Y.; Wang, L.; Chawla, R.; Pliner, H.; Trapnell, C.

10.1101/110668 — genomics — Posted on 2017-02-21

224 Strength of functional signature correlates with effect size in autism

Ballouz, S.; Gillis, J.

10.1101/043422 — genetics — Posted on 2017-02-21

225 Sequence properties underlying gene regulatory enhancers are conserved across mammals

Chen, L.; Fish, A. E.; Capra, J. A.

10.1101/110676 — evolutionary biology — Posted on 2017-02-21

226 COPII-coated membranes function as transport carriers of intracellular procollagen-1

Gorur, A.; Yuan, L.; Kenny, S. J.; Baba, S.; Xu, K.; Schekman, R.

10.1101/110700 — cell biology — Posted on 2017-02-21

227 Mapping Autosomal Recessive Intellectual Disability: Combined Microarray and Exome Sequencing Identifies 26 Novel Candidate Genes in 192 Consanguineous Families

Harripaul, R.; Vasli, N.; Mikhailov, A.; Rafiq, M. A.; Mittal, K.; Windpassinger, C.; Sheikh, T.; Noor, A.; Mahmood, H.; Downey, S.; Johnson, M.; Vleuten, K.; Bell, L.; Ilyas, M.; Khan, F. S.; Khan, V.; Moradi, M.; Ayaz, M.; Naeem, F.; Heidari, A.; Ahmed, I.; Ghadami, S.; Agha, Z.; Zeinali, S.; Qamar, R.; Mozhdehipanah, H.; John, P.; Mir, A.; Ansar, M.; French, L.; Ayub, M.; Vincent, J. B.

10.1101/092346 — genetics — Posted on 2017-02-21

228 Environmental cholera (Vibrio cholerae) dynamics in an estuarine system in southern coastal Ecuador

Ryan, S. J.; Stewart-Ibarra, A. M.; Ordonez, E.; Chu, W.; Finkelstein, J. L.; King, C. A.; Escobar, L. E.; Lupone, C.; Heras, F.; Tauzer, E.; Wagonner, E.; James, T. G.; Cardenas, W.; Polhemus, M.

10.1101/110189 — epidemiology — Posted on 2017-02-21

229 Variability of quantal NMDA to AMPA current ratio in nucleus tractus solitarii neurons

Strube, C.; Gackiere, F.; Saliba, L.; Tell, F.; KESSLER, J.-P.

10.1101/110569 — neuroscience — Posted on 2017-02-21

230 SAVE: A secure cloud-based pipeline for CRISPR pooled screen deconvolution

Jeong, H.-h.; Kim, S. Y.; Rosseaux, M. W.; Zoghbi, H. Y.; Liu, Z.

10.1101/110262 — bioinformatics — Posted on 2017-02-21

231 Payoff-biased social learning underlies the diffusion of novel extractive foraging traditions in a wild primate

Barrett, B. J.; McElreath, R.; Perry, S.

10.1101/110221 — animal behavior and cognition — Posted on 2017-02-21

232 Repressing Integrase attachment site operation with CRISPR-Cas9 in E. coli

Shur, A.; Murray, R. M.

10.1101/110254 — synthetic biology — Posted on 2017-02-21

233 Broad-spectrum inhibition of Phytophthora infestans by root endophytes

de Vries, S.; von Dahlen, J. K.; Schnake, A.; Ginschel, S.; Schulz, B.; Rose, L. E.

10.1101/107052 — plant biology — Posted on 2017-02-21

234 The mutation rates and mutational bias of influenza A virus

Pauly, M. D.; Procario, M.; Lauring, A. S.

10.1101/110197 — microbiology — Posted on 2017-02-21

235 Large scale variation in the rate of de novo mutation in humans and its relationship to divergence and diversity.

Smith, T.; Eyre-Walker, A.

10.1101/110452 — genomics — Posted on 2017-02-21

236 Single-cell epigenomics maps the continuous regulatory landscape of human hematopoietic differentiation

Buenrostro, J. D.; Corces, R.; Wu, B.; Schep, A. N.; Lareau, C.; Majeti, R.; Chang, H.; Greenleaf, W.

10.1101/109843 — genomics — Posted on 2017-02-21

237 Replication and characterization of CADM2 and MSRA genes on human behavior

Boutwell, B.; Hinds, D.; the 23andMe Research Team, ; Tielbeek, J.; Ong, K.; Day, F.; Perry, J.

10.1101/110395 — genetics — Posted on 2017-02-21

238 chromVAR: Inferring transcription factor variation from single-cell epigenomic data

Schep, A. N.; Wu, B.; Buenrostro, J. D.; Greenleaf, W. J.

10.1101/110346 — bioinformatics — Posted on 2017-02-21

239 Atomic resolution structure of serine protease proteinase K at ambient temperature

Masuda, T.; Suzuki, M.; Inoue, S.; Song, C.; Nakane, T.; Nango, E.; Tanaka, R.; Tono, K.; Joti, Y.; Kameshima, T.; Hatsui, T.; Yabashi, M.; Mikami, B.; Nureki, O.; Numata, K.; Iwata, S.; Sugahara, M.

10.1101/110361 — biochemistry — Posted on 2017-02-21

240 A tutorial on Gaussian process regression with a focus on exploration-exploitation scenarios

Schulz, E.; Speekenbrink, M.; Krause, A.

10.1101/095190 — animal behavior and cognition — Posted on 2017-02-21

241 Boron Hyperaccumulation Mechanisms in Puccinellia distans as Revealed by Transcriptomic Analysis

Ozturk, S. E.; Goktay, M.; Has, C.; Babaoglu, M.; Allmer, J.; Doganlar, S.; Frary, A.

10.1101/110403 — plant biology — Posted on 2017-02-21

242 Sweep Dynamics (SD) plots: Computational identification of selective sweeps to monitor the adaptation of influenza A viruses

Klingen, T. R.; Reimering, S.; Loers, J.; Mooren, K.; Klawonn, F.; Krey, T.; Gabriel, G.; McHardy, A.

10.1101/110528 — bioinformatics — Posted on 2017-02-21

243 Performance Evaluation of Empirical Mode Decomposition Algorithms for Mental Task Classification

Gupta, A.; Kumar, D.; Chakraborti, A.; Sharma, K.

10.1101/076646 — bioinformatics — Posted on 2017-02-21

244 Genome-wide protein phylogenies for four African cichlid species

Varadarajan, A. R.; Mopuri, R.; Streelman, J. T.; McGrath, P. T.

10.1101/110510 — genomics — Posted on 2017-02-21

245 Parsing propagule pressure: Number, not size, of introductions drives colonization success in a novel environment

Koontz, M. J.; Oldfather, M. F.; Melbourne, B. A.; Hufbauer, R. A.

10.1101/108324 — ecology — Posted on 2017-02-21

246 Micromanagment of stem cell proliferation by the Drosophila testis stem cell niche

Puretskaia, O. A.; Albert, E. A.; Terekhanova, N. V.; Boekel, C.

10.1101/110619 — developmental biology — Posted on 2017-02-21

247 IcyTree: Rapid browser-based visualization for phylogenetic trees and networks

Vaughan, T. G.

10.1101/110213 — bioinformatics — Posted on 2017-02-21

248 A coarse-graining, ultrametric approach to resolve the phylogenyof prokaryotic strains with frequent recombination

Pang, T. Y.

10.1101/094599 — bioinformatics — Posted on 2017-02-21

249 Histone H3 Lysine 4 methyltransferases MLL3 and MLL4 Modulate Long-range Chromatin Interactions at Enhancers

Yan, J.; Chen, S.-A. A.; Local, A.; Liu, T.; Qiu, Y.; Lee, A.-Y.; Jung, I.; Preissl, S.; Rivera, C. M.; Wang, C.; Ishii, H.; Fang, R.; Ye, Z.; Ge, K.; Hu, M.; Ren, B.

10.1101/110239 — genomics — Posted on 2017-02-21

250 Holocene selection for variants associated with cognitive ability: Comparing ancient and modern genomes.

Woodley of Menie, M. A.; Younuskunja, S.; Balan, B.; Piffer, D.

10.1101/109678 — genomics — Posted on 2017-02-21

251 The house spider genome reveals an ancient whole-genome duplication during arachnid evolution

Schwager, E. E.; Sharma, P. P.; Clarke, T.; Leite, D. J.; Wierschin, T.; Pechmann, M.; Akiyama-Oda, Y.; Esposito, L.; Bechsgaard, J.; Bilde, T.; Buffry, A. D.; Chao, H.; Dinh, H.; Doddapaneni, H.; Dugan, S.; Eibner, C.; Extavour, C. G.; Funch, P.; Garb, J.; Gonzalez, L.; Gonzalez, V. L.; Griffiths-Jones, S.; Han, Y.; Hayashi, C.; Hilbrant, M.; Hughes, D. S. T.; Janssen, R.; Lee, S. L.; Maeso, I.; Murali, S. C.; Muzny, D. M.; Nunes da Fonseca, R.; Paese, C. L. B.; Qu, J.; Ronshaugen, M.; Schomburg, C.; Schoenauer, A.; Stollewerk, A.; Torres-Oliva, M.; Turetzek, N.; Vanthournout, B.; Werren, J.

10.1101/106385 — genomics — Posted on 2017-02-21

252 Single-cell epigenomics maps the continuous regulatory landscape of human hematopoietic differentiation

Buenrostro, J. D.; Greenleaf, W.; Corces, R.; Wu, B.; Schep, A. N.; Lareau, C.; Majeti, R.; Chang, H.

10.1101/109843 — genomics — Posted on 2017-02-21

253 Mass spectrometrists should search for all peptides, but assess only the ones they care about

Sticker, A.; Martens, L.; Clement, L.

10.1101/094581 — bioinformatics — Posted on 2017-02-21

254 Modeling the dynamics of mouse iron body distribution: hepcidin is necessary but not sufficient

Parmar, J. H.; Davis, G.; Shevchuk, H.; Mendes, P.

10.1101/062901 — systems biology — Posted on 2017-02-21

255 Multiple Demand (MD) system’s activity predicts individual differences in working memory and fluid intelligence

Assem, M.; Blank, I. A.; Mineroff, Z.; Ademoglu, A.; Fedorenko, E.

10.1101/110270 — neuroscience — Posted on 2017-02-21

256 Global Proteomic Analyses of Macrophage Response to Mycobacterium tuberculosis Infection

Poirier, V.; Av-Gay, G.; Av-Gay, Y.

10.1101/110304 — microbiology — Posted on 2017-02-21

257 Metabarcoding of unfractionated water samples relates phyto-, zoo- and bacterioplankton dynamics and reveals a single-taxon bacterial bloom

Wurzbacher, C.; Attermeyer, K.; Kettner, M. T.; Flintrop, C.; Warthmann, N.; Hilt, S.; Grossart, H.-P.; Monaghan, M. T.

10.1101/058628 — ecology — Posted on 2017-02-21

258 A novel method for single whitefly (Bemisia tabaci) transcriptomes reveals an eleven amino acid deletion in the NusG protein in the bacterial endosymbiont Portiera aleyrodidarum

Sseruwagi, P.; Wainaina, J.; Ndunguru, J.; Tumuhimbise, R.; Tairo, F.; Guo, J.; Vrielink, A.; Blythe, A.; Kinene, T.; De Marchi, B.; Kehoe, M. A.; Tanz, S. K.; Boykin, L. M.

10.1101/110353 — genetics — Posted on 2017-02-21

259 Cas9-Assisted Targeting of CHromosome segments (CATCH) for targeted nanopore sequencing and optical genome mapping

Gabrieli, T.; Sharim, H.; Michaeli, Y.; Ebenstein, Y.

10.1101/110163 — genomics — Posted on 2017-02-20

260 Evolinc: a comparative transcriptomics and genomics pipeline for quickly identifyingsequence conserved lincRNAs for functional analysis.

Nelson, A. D. L.; Devisetty, U. K.; Palos, K.; Haug-Baltzell, A. K.; Lyons, E.; Beilstein, M. A.

10.1101/110148 — bioinformatics — Posted on 2017-02-20

261 Genome-wide regulatory model from MPRA data predicts functional regions, eQTLs, and GWAS hits

Li, Y.; Shi, A.; Tewhey, R.; Sabeti, P.; Ernst, J.; Kellis, M.

10.1101/110171 — bioinformatics — Posted on 2017-02-20

Madani Tonekaboni, S. A.; Manem, V. S. K.; El-Hachem, N.; Haibe-Kains, B.

10.1101/110130 — bioinformatics — Posted on 2017-02-20

263 The impact factor fallacy

Paulus, F. M.; Cruz, N.; Krach, S.

10.1101/108027 — scientific communication and education — Posted on 2017-02-20

264 Effective synaptic interactions in subsampled nonlinear networks with strong coupling

Brinkman, B. A. W.; Rieke, F.; Shea-Brown, E.; Buice, M. A.

10.1101/105510 — neuroscience — Posted on 2017-02-20

265 Feedforward inhibition allows input summation to vary in recurrent cortical networks

Histed, M. H.

10.1101/109736 — neuroscience — Posted on 2017-02-20

266 High-Throughput Metabolic Network Analysis and Metatranscriptomics of a Cosmopolitan and Streamlined Freshwater Lineage

Hamilton, J. J.; Garcia, S. L.; Brown, B. S.; Oyserman, B. O.; Moya-Flores, F.; Bertilsson, S.; Malmstrom, R. R.; Forest, K. T.; McMahon, K. D.

10.1101/106856 — microbiology — Posted on 2017-02-20

267 A high-resolution mRNA expression time course of embryonic development in zebrafish

White, R. J.; Collins, J. E.; Sealy, I. M.; Wali, N.; Dooley, C. M.; Digby, Z.; Stemple, D. L.; Murphy, D. N.; Hourlier, T.; Fullgrabe, A.; Davis, M. P.; Enright, A. J.; Busch-Nentwich, E. M.

10.1101/107631 — developmental biology — Posted on 2017-02-20

268 Beyond spike-timing-dependent plasticity: a computational study of plasticity gradients across basal dendrites.

Bono, J.; Clopath, C.

10.1101/063719 — neuroscience — Posted on 2017-02-20

269 Visual processing mode switching regulated by VIP cells

Lee, J. H.; Mihalas, S.

10.1101/084632 — neuroscience — Posted on 2017-02-20

270 Real-time decoding of bladder pressure from pelvic nerve activity

Lubba, C.; Mitrani, E.; Hokanson, J.; Grill, W.; Schultz, S. R.

10.1101/109942 — neuroscience — Posted on 2017-02-20

271 Meiotic recombination modulates the structure and dynamics of the synaptonemal complex during C. elegans meiosis

Pattabiraman, D.; Roelens, B.; Woglar, A.; Villeneuve, A. M.

10.1101/110064 — genetics — Posted on 2017-02-20

272 Complete mitochondrial genome of golden silk producer Antheraea assamensis and its comparative analysis with other lepidopteran insects

Singh, D.; Kabiraj, D.; Chetia, H.; Sharma, P.; Neog, K.; Bora, U.

10.1101/110031 — evolutionary biology — Posted on 2017-02-20

273 Estimation of the dispersal distances of an aphid-borne virus in a patchy landscape

Pleydell, D. R. J.; Soubeyrand, S.; Dallot, S.; Labonne, G.; Chadoeuf, J.; Jacquot, E.; Thebaud, G.

10.1101/109561 — epidemiology — Posted on 2017-02-20

Brieno-Enriquez, M. A.; Moak, S. L.; Holloway, J. K.; Cohen, P. E.

10.1101/110098 — cell biology — Posted on 2017-02-20

275 FUMA: Functional mapping and annotation of genetic associations

Watanabe, K.; Taskesen, E.; van Bochoven, A.; Posthuma, D.

10.1101/110023 — bioinformatics — Posted on 2017-02-20

276 Precise insertion and guided editing of higher plant genomes using Cpf1 CRISPR nucleases

Begemann, M. B.; Gray, B. N.; January, E.; Gordon, G. C.; He, Y.; Liu, H.; Wu, X.; Brutnell, T. P.; Mockler, T. C.; Oufattole, M.

10.1101/109983 — plant biology — Posted on 2017-02-20

277 Effective connectivity inferred from fMRI transition dynamics during movie viewing points to a balanced reconfiguration of cortical interactions

Gilson, M.; Deco, G.; Friston, K.; Hagmann, P.; Mantini, D.; Betti, V.; Romani, G. L.; Corbetta, M.

10.1101/110015 — neuroscience — Posted on 2017-02-20

278 Local interactions lead to spatially correlated gene expression levels in bacterial groups.

van Vliet, S.; Dal Co, A.; Winkler, A. R.; Spriewald, S.; Stecher, B.; Ackermann, M.

10.1101/109991 — microbiology — Posted on 2017-02-20

279 A fast and accurate algorithm to test for binary phenotypes and its application to PheWAS

Dey, R.; Schmidt, E. M.; Abecasis, G. R.; Lee, S.

10.1101/109876 — genomics — Posted on 2017-02-20

280 Bird interactions with drones, from individuals to large colonies

Lyons, M.; Brandis, K.; Callaghan, C.; McCann, J.; Mills, C.; Ryall, S.; Kingsford, R.

10.1101/109926 — ecology — Posted on 2017-02-20

281 Can the location of a trophectoderm biopsy contribute to human blastocyst development ?

Takano, T.; Funabiki, M.; Taguchi, S.; Saji, F.; Amano, N.; Young, K. L.; Nakamura, Y.

10.1101/109298 — developmental biology — Posted on 2017-02-20

282 A cell based, high throughput assay for quantitative analysis of Hedgehog pathway activation using a Smoothened phosphorylation sensor

Albert, E. A.; Boekel, C.

10.1101/110056 — cell biology — Posted on 2017-02-20

283 A cautionary tale on using tumour growth rate to predict survival

Mistry, H.; Ortega, F.

10.1101/109934 — cancer biology — Posted on 2017-02-20

284 Stochastic model of contact inhibition and the proliferation of melanoma in situ

Morais, M. C. C.; Stuhl, I.; Sabino, A. U.; Lautenschlager, W. W.; Queiroga, A. S.; Tortelli, T. C.; Chammas, R.; Suhov, Y.; Ramos, A. F.

10.1101/110007 — cancer biology — Posted on 2017-02-20

285 CRISPRAnalyzeR: Interactive analysis, annotation and documentation of pooled CRISPR screens

Winter, J.; Schwering, M.; Pelz, O.; Rauscher, B.; Zhan, T.; Heigwer, F.; Boutros, M.

10.1101/109967 — bioinformatics — Posted on 2017-02-20

286 Automated 3D Neuron Tracing with Precise Branch Erasing and Confidence Controlled Back-Tracking

Liu, S.; Zhang, D.; Song, Y.; Peng, H.; Cai, W.

10.1101/109892 — neuroscience — Posted on 2017-02-20

287 New insights on the pharmacogenomics of antidepressant response from the GENDEP and STAR*D studies: rare variant analysis and high-density imputation

Fabbri, C.; Tansey, K.; Perlis, R.; Hauser, J.; Henigsberg, N.; Maier, W.; Mors, O.; Placentino, A.; Rietschel, M.; Souery, D.; Breen, G.; Curtis, C.; Sang-Hyuk, L.; Newhouse, S.; Patel, H.; Guipponi, M.; Perroud, N.; Bondolfi, G.; O'Donovan, M.; Lewis, G.; Biernacka, J.; Weinshilboum, R.; Farmer, A.; Aitchison, K.; Craig, I.; McGuffin, P.; Uher, R.; Lewis, C.

10.1101/109827 — genomics — Posted on 2017-02-20

288 Creating a Community of Data Champions

Higman, R.; Teperek, M.; Kingsley, D.

10.1101/104661 — scientific communication and education — Posted on 2017-02-20

289 The impact factor fallacy

Paulus, F. M.; Cruz, N.; Krach, S.

10.1101/108027 — scientific communication and education — Posted on 2017-02-20

290 Reason’s Enemy Is Not Emotion: Engagement of Cognitive Control Networks Explains Biases in Gain/Loss Framing

Li, R.; Smith, D. V.; Clithero, J. A.; Venkatraman, V.; Carter, R. M.; Huettel, S. A.

10.1101/109819 — neuroscience — Posted on 2017-02-20

291 Model-based spike sorting with a mixture of drifting t-distributions

Shan, K. Q.; Lubenov, E. V.; Siapas, A. G.

10.1101/109850 — neuroscience — Posted on 2017-02-20

292 Do Candidate Genes Affect the Brain’s White Matter Microstructure? Large-Scale Evaluation of 6,165 Diffusion MRI Scans

Jahanshad, N.; Ganjgahi, H.; Bralten, J.; den Braber, A.; Faskowitz, J.; Knodt, A.; Lemaitre, H.; Nir, T.; Patel, B.; Richie, S.; Sprooten, E.; van Hulzen, K.; Zavaliangos-Petropulu, A.; Zwiers, M.; Almasy, L.; Bastin, M.; Bernstein, M.; Blangero, J.; Curran, J.; Deary, I. J.; de Zubicary, G.; Duggirala, R.; Fisher, S.; Franke, B.; Fox, P.; Goldman, D.; Haberg, A.; Hariri, A.; Hong, L. E.; Hoogman, M.; Huentelman, M.; Martin, N.; Martinot, J.-L.; McIntosh, A.; McMahon, K.; Medland, S.; Mitchell, B.; Munoz-Maniega, S.; Olvera, R.; Oosterlaan, J.; Peterson, C.; Royle, N.; Saykin, A.; Schumann, G

10.1101/107987 — neuroscience — Posted on 2017-02-20

293 Bacterial outer membrane homeostasis via retrograde phospholipid transport

Shrivastava, R.; Jiang, X.; Chng, S.-S.

10.1101/109884 — microbiology — Posted on 2017-02-20

294 Are oceanic fronts ecotones? Seasonal changes along the Subtropical Front show fronts as bacterioplankton transition zones but not diversity hotspots

Morales, S. E.; Meyer, M.; Currie, K.; Baltar, F.

10.1101/109868 — microbiology — Posted on 2017-02-20

295 Using eDNA to Detect the Distribution and Density of Invasive Crayfish in the Honghe-Hani Rice Terrace World Heritage Site

Cai, W.; Ma, Z.; Yang, C.; Wang, L.; Wang, W.; Zhao, G.; Geng, Y.; Yu, D. W.

10.1101/109074 — ecology — Posted on 2017-02-20

296 Genetic and transgenic reagents for Drosophila simulans, D.mauritiana, D. yakuba, D. santomea and D. virilis

Stern, D.; Crocker, J.; Ding, Y.; Frankel, N.; Kappes, G.; Kim, E.; Kuzmickas, R.; Lemire, A.; Mast, J.; Picard, S.

10.1101/096644 — genetics — Posted on 2017-02-20

297 Open Design 3D-Printable Adjustable Micropipette that meets ISO Standard for Accuracy

Brennan, M.; Bokhari, F.; Eddington, D.

10.1101/109231 — bioengineering — Posted on 2017-02-20

298 Disrupted cholinergic modulation can underlie abnormal gamma rhythms in schizophrenia and and auditory hallucination

Lee, J. H.

10.1101/072504 — pathology — Posted on 2017-02-20

299 Detecting large-scale networks in the human brain using high-density electroencephalography

Lu, Q.; Farahibozorg, S.; Porcaro, C.; Wenderoth, N.; Mantini, D.

10.1101/077107 — neuroscience — Posted on 2017-02-20

300 The house spider genome reveals an ancient whole-genome duplication during arachnid evolution

10.1101/106385 — genomics — Posted on 2017-02-20

301 The NCA-1 and NCA-2 ion channels function downstream of Gq and Rho to regulate locomotion in C. elegans

Topalidou, I.; Chen, P.-A.; Cooper, K.; Watanabe, S.; Jorgensen, E. M.; Ailion, M.

10.1101/090514 — genetics — Posted on 2017-02-20

302 Approximate Bayesian bisulphite sequencing analysis (ABBA) for analysis of WGBS in disease

Rackham, O. J. L.; Langley, S. R.; Oates, T.; Vradi, E.; Harmston, N.; Srivastava, P. K.; Behmoaras, J.; Dellaportas, P.; Bottolo, L.; Petretto, E.

10.1101/041715 — bioinformatics — Posted on 2017-02-20

303 Simulation Framework for Generating Intratumor Heterogeneity Patterns in a Cancer Cell Population

Iwasaki, W. M.; Innan, H.

10.1101/109801 — cancer biology — Posted on 2017-02-19

304 A Probabilistic Approach to the Diagnosis of Obstructive Sleep Apnea and an Analysis of Factors Affecting it Using Chest Movement Analysis, Recursive Noise Reduction and Self-Learning Algorithms.

Ramnani, R.; Tripathi, A.

10.1101/080515 — biophysics — Posted on 2017-02-19

305 Constraining CD45 exclusion at close-contacts provides a mechanism for discriminatory T-cell receptor signalling

Fernandes, R. A.; Ganzinger, K. A.; Tzou, J.; Jonsson, P.; Lee, S. F.; Palayret, M.; Santos, A. M.; Chang, V. T.; Macleod, C.; Lagerholm, B. C.; Lindsay, A. E.; Dushek, O.; Tilevik, A.; Davis, S. J.; Klenerman, D.

10.1101/109785 — immunology — Posted on 2017-02-19

306 Gene knockout shows that PML (TRIM19) does not restrict the early stages of HIV-1 infection in human cell lines

Masroori, N.; Cherry, P.; Merindol, N.; Li, J.-x.; Poulain, L.; Plourde, M. B.; Berthoux, L.

10.1101/109769 — immunology — Posted on 2017-02-19

307 Stroke-associated pattern of gene expression previously identified by machine-learning is diagnostically robust in an independent patient population.

O'Connell, G.; Chantler, P. D.; Barr, T. L.

10.1101/109777 — genomics — Posted on 2017-02-19

308 Niche construction in evolutionary theory: the construction of an academic niche?

Gupta, M.; Prasad, N. G.; Dey, S.; Joshi, A.; Vidya, T. N. C.

10.1101/109793 — evolutionary biology — Posted on 2017-02-19

309 Heterogeneity of normal human breast stem and progenitor cells as revealed by transcriptional profiling

Colacino, J.; Azizi, E.; Brooks, M.; Fouladdel, S.; McDermott, S. P.; Lee, M.; Hill, D.; Sartor, M.; Rozek, L.; Wicha, M.

10.1101/109751 — developmental biology — Posted on 2017-02-18

310 An icosahedral virus as a fluorescent calibration standard: methods for counting protein molecules in cells by fluorescence microscopy

Murray, J. M.

10.1101/088617 — cell biology — Posted on 2017-02-18

311 Monitoring large populations of locus coeruleus neurons reveals the non-global nature of the norepinephrine neuromodulatory system

Totah, N. K.; Neves, R. M.; Panzeri, S.; Logothetis, N. K.; Eschenko, O.

10.1101/109710 — neuroscience — Posted on 2017-02-18

312 Feedforward inhibition allows input summation to vary in recurrent cortical networks

Histed, M. H.

10.1101/109736 — neuroscience — Posted on 2017-02-18

313 Metagenomic DNA sequencing for the diagnosis of intraocular infections

Doan, T.; Acharya, N.; Pinsky, B.; Sahoo, M.; Chow, E.; Banaei, N.; Budvytiene, I.; Cevallos, V.; Zhong, L.; Zhou, Z.; Lietman, T.; DeRisi, J. L.

10.1101/109686 — genomics — Posted on 2017-02-18

314 Intervene: a tool for intersection and visualization of multiple gene or genomic region sets

Khan, A.; Mathelier, A.

10.1101/109728 — bioinformatics — Posted on 2017-02-18

315 Long-term taxonomic and functional divergence from donor bacterial strains following fecal microbiota transplantation in immunocompromised patients

Moss, E.; Falconer, S.; Tkachenko, E.; Wang, M.; Systrom, H.; Mahabamunuge, J.; Relman, D.; Hohmann, E.; Bhatt, A.

10.1101/109645 — genomics — Posted on 2017-02-18

316 Comprehensive Analysis of Constraint on the Spatial Distribution of Missense Variants in Human Protein Structures

Sivley, R. M.; Kropski, J.; Sheehan, J.; Cogan, J.; Dou, X.; Blackwell, T. S.; Phillips, J. A.; Meiler, J.; Bush, W. S.; Capra, J. A.

10.1101/109652 — genetics — Posted on 2017-02-18

317 Bayesian inference of transcription dynamics from population snapshots of single-molecule RNA FISH in single cells

Gomez-Schiavon, M.; Chen, L.-F.; West, A. E.; Buchler, N. E.

10.1101/109603 — systems biology — Posted on 2017-02-18

318 Genome sequencing reveals Zika virus diversity and spread in the Americas

Metsky, H. C.; Matranga, C. B.; Wohl, S.; Schaffner, S. F.; Freije, C. A.; Winnicki, S. M.; West, K.; Qu, J.; Baniecki, M. L.; Gladden-Young, A.; Lin, A. E.; Tomkins-Tinch, C. H.; Park, D. J.; Luo, C. Y.; Barnes, K. G.; Chak, B.; Barbosa-Lima, G.; Delatorre, E.; Vieira, Y. R.; Paul, L. M.; Tan, A. L.; Porcelli, M. C.; Vasquez, C.; Cannons, A. C.; Cone, M. R.; Hogan, K. N.; Kopp, E. W.; Anzinger, J. J.; Garcia, K. F.; Parham, L. A.; Gelvez Ramirez, R. M.; Miranda Montoya, M. C.; Rojas, D. P.; Brown, C. M.; Hennigan, S.; Sabina, B.; Scotland, S.; Gangavarapu, K.; Grubaugh, N. D.; Oliveira, G.; R

10.1101/109348 — genomics — Posted on 2017-02-18

319 Functional brain segmentation using inter-subject correlation in fMRI

Kauppi, J.-P.; Pajula, J.; Niemi, J. A.; Hari, R.; Tohka, J.

10.1101/057620 — neuroscience — Posted on 2017-02-17

320 Viral coinfection is shaped by host ecology and virus-virus interactions across diverse microbial taxa and environments

Diaz-Munoz, S. L.

10.1101/038877 — microbiology — Posted on 2017-02-17

321 Multivalency drives the neutralizing activity of antibodies against the Plasmodium falciparum circumsporozoite protein

Fisher, C. R.; Kaczmarski, J. A.; Sutton, H. J.; Clifton, B.; Mitchell, J.; Cai, Y.; Dups, J. N.; Darcy, N. J.; Singh, M.; McNamara, H. A.; Chuah, A.; Peat, T.; Jackson, C. J.; Cockburn, I. A.

10.1101/108746 — immunology — Posted on 2017-02-17

322 Systematic analysis of cell phenotypes and cellular social networks in tissues using the multiplexed image cytometry analysis toolbox (miCAT)

Schapiro, D.; Jackson, H. W.; Raghuraman, S.; Zanotelli, V. R. T.; Fischer, J. R. R.; Schulz, D.; Giesen, C.; Catena, R.; Varga, Z.; Bodenmiller, B.

10.1101/109207 — systems biology — Posted on 2017-02-17

323 A Fluorescent Split Aptamer for Visualizing RNA-RNA Assembly In Vivo

Alam, K. K.; Tawiah, K. D.; Lichte, M. F.; Porciani, D.; Burke, D. H.

10.1101/109306 — synthetic biology — Posted on 2017-02-17

324 Simulating retinal encoding: factors influencing Vernier acuity

Jiang, H.; Cottaris, N.; Golden, J.; Brainard, D.; Farrell, J.; Wandell, B.

10.1101/109405 — neuroscience — Posted on 2017-02-17

325 Distinct neural systems for the production of communicative vocal behaviors

Agnew, Z. K.; Ward, L.; McGettigan, C.; Josephs, O.; Scott, S. K.

10.1101/107441 — neuroscience — Posted on 2017-02-17

326 Linking soil biology and chemistry using bacterial isolate exometabolite profiles

Swenson, T. L.; Karaoz, U.; Swenson, J. M.; Bowen, B. P.; Northen, T. R.

10.1101/109330 — microbiology — Posted on 2017-02-17

327 MinE recruits, stabilizes, releases, and inhibits MinD interactions with membrane to drive oscillation

Vecchiarelli, A. G.; Li, M.; Mizuuchi, M.; Ivanov, V.; Mizuuchi, K.

10.1101/109637 — microbiology — Posted on 2017-02-17

328 Studies in Particle Sorting by Paramecium Cilia Arrays

Mayne, R.; Whiting, J.; Wheway, G.; Melhuish, C.; Adamatzky, A.

10.1101/109470 — microbiology — Posted on 2017-02-17

329 Toxicity and applications of internalised magnetite nanoparticles within live Paramecium caudatum cells

Mayne, R.; Whiting, J.; Melhuish, C.; Adamatzky, A.

10.1101/109488 — microbiology — Posted on 2017-02-17

330 Whole exome sequencing reveals a mutation in ARMC9 as a cause of mental retardation, ptosis and polydactyly

Kar, A.; Phadke, S. R.; Bhowmik, A. D.; Dalal, A.

10.1101/109124 — genetics — Posted on 2017-02-17

331 Molecular evidence for the early evolution of photosynthetic water oxidation

Cardona, T.; Sanchez-Baracaldo, P.; Rutherford, A. W.; Larkum, A.

10.1101/109447 — evolutionary biology — Posted on 2017-02-17

332 HistMapR: Rapid digitization of historical land-use maps in R

Auffret, A. G.; Kimberley, A.; Plue, J.; Skanes, H.; Jakobsson, S.; Walden, E.; Wennbom, M.; Wood, H.; Bullock, J. M.; Cousins, S. A. O.; Gartz, M.; Hooftman, D. A. P.; Trank, L.

10.1101/109504 — ecology — Posted on 2017-02-17

333 Using remote camera traps to assess mammal and bird assemblages across a complex environmental landscape

Cloyed, C. S.; Cappelli, L. R.; Tilson, D. A.; Crawford, J. A.; Dell, A. I.

10.1101/109538 — ecology — Posted on 2017-02-17

334 Analysis of the Quality of Macromolecular Structures

Salunke, D. M.

10.1101/108456 — biophysics — Posted on 2017-02-17

335 Strategies for analyzing bisulfite sequencing data

Wreczycka, K.; Gosdschan, A.; Yusuf, D.; Gruening, B.; Assenov, Y.; Akalin, A.

10.1101/109512 — bioinformatics — Posted on 2017-02-17

336 Mass spectrometrists should search for all peptides, but assess only the ones they care about

Sticker, A.; Clement, L.; Martens, L.

10.1101/094581 — bioinformatics — Posted on 2017-02-17

337 The erratic and contingent progression of research on territoriality: a case study.

Kamath, A.; Losos, J.

10.1101/107664 — animal behavior and cognition — Posted on 2017-02-17

338 Individual differences in responsivity to social rewards: Insights from two eye-tracking tasks

Chakrabarti, B.; Haffey, A.; Canzano, L.; Taylor, C.; McSorley, E.

10.1101/108894 — animal behavior and cognition — Posted on 2017-02-17

339 Activation of the hypothalamic feeding centre upon visual prey detection

Muto, A.; Lal, P.; Ailani, D.; Abe, G.; Itoh, M.; Kawakami, K.

10.1101/078527 — neuroscience — Posted on 2017-02-17

340 Verification of Arabidopsis stock collections using SNPmatch - an algorithm for genotyping high-plexed samples

Pisupati, R.; Reichardt, I.; Seren, U.; Korte, P.; Nizhynska, V.; Kerdaffrec, E.; Uzunova, K.; Rabanal, F.; Filiault, D. L.; Nordborg, M.

10.1101/109520 — genomics — Posted on 2017-02-17

341 Modeling allele-specific gene expression by single-cell RNA sequencing

Jiang, Y.; Zhang, N. R.; Li, M.

10.1101/109629 — genomics — Posted on 2017-02-17

342 The third moments of the site frequency spectrum

Klassmann, A.; Ferretti, L.

10.1101/109579 — genetics — Posted on 2017-02-17

343 Proper experimental design requires randomization/balancing of molecular ecology experiments

Balint, M.; Marton, O.; Schatz, M.; Duering, R.-A.; Grossart, H.-P.

10.1101/109280 — ecology — Posted on 2017-02-17

344 A novel mitochondrial enriched antioxidant protects neurons against acute oxidative stress

Drummond, N. J.; Davies, N. O.; Lovett, J. E.; Miller, M. R.; Cook, G.; Becker, T.; Becker, C. G.; McPhail, D. B.; Kunath, T.

10.1101/109439 — cell biology — Posted on 2017-02-17

345 Harnessing optogenetics to probe sub-cellular mechanics

Oakes, P. W.; Wagner, E.; Brand, C. A.; Probst, D.; Linke, M.; Schwarz, U. S.; Glotzer, M.; Gardel, M. L.

10.1101/109595 — biophysics — Posted on 2017-02-17

346 Emergent community agglomeration from data set geometry

Zhao, C.; Song, J. S.

10.1101/109587 — bioinformatics — Posted on 2017-02-17

347 From Sequence to Function: Coevolving Amino Acids Encode Structural and Functional Domains

Granata, D.; Ponzoni, L.; Micheletti, C.; Carnevale, V.

10.1101/109397 — bioinformatics — Posted on 2017-02-17

348 High-confidence Coding and Noncoding Transcriptome Maps

You, B.-H.; Yoon, S.-H.; Nam, J.-W.

10.1101/109363 — bioinformatics — Posted on 2017-02-17

349 Significance estimation for large scale untargeted metabolomics annotations

Scheubert, K.; Hufsky, F.; Petras, D.; Wang, M.; Nothias, L.-F.; Duehrkop, K.; Bandeira, N.; Dorrestein, P.; Boecker, S.

10.1101/109389 — bioinformatics — Posted on 2017-02-17

350 Patterns of shared signatures of recent positive selection across human populations

Johnson, K. E.; Voight, B. F.

10.1101/109371 — genetics — Posted on 2017-02-17

351 The Bayesian-Laplacian Brain

Zeki, S.; Chen, O. Y.

10.1101/094516 — neuroscience — Posted on 2017-02-17

352 Zebrafish models for human ALA-dehydratase-deficient porphyria (ADP) and hereditary coproporphyria (HCP) generated with TALEN and CRISPR-Cas9

Zhang, S.; Meng, J.; Niu, Z.; Huang, Y.; Wang, J.; Su, X.; Zhou, Y.; Wang, H.

10.1101/109553 — genetics — Posted on 2017-02-17

353 Integrating tissue specific mechanisms into GWAS summary results

Barbeira, A.; Dickinson, S. P.; Torres, J. M.; Torstenson, E. S.; Zheng, J.; Wheeler, H. E.; Shah, K. P.; Edwards, T.; GTEx Consortium, ; Nicolae, D.; Cox, N. J.; Im, H. K.

10.1101/045260 — bioinformatics — Posted on 2017-02-17

354 plantiSMASH: automated identification, annotation and expression analysis of plant biosynthetic gene clusters

Kautsar, S. A.; Suarez Duran, H. G.; Blin, K.; Osbourn, A.; Medema, M. H.

10.1101/083535 — bioinformatics — Posted on 2017-02-17

355 gene-cocite: a web application for extracting, visualising and assessing the cocitations of a list of genes

Newton, R.; Wernisch, L.

10.1101/109173 — bioinformatics — Posted on 2017-02-17

356 NoRMCorre: An online algorithm for piecewise rigid motion correction of calcium imaging data

Pnevmatikakis, E. A.; Giovannucci, A.

10.1101/108514 — neuroscience — Posted on 2017-02-17

357 An Estradiol-Inducible Promoter Enables Fast, Graduated Control of Gene Expression in Fission Yeast

Ohira, M. J.; Hendrickson, D. G.; McIsaac, R. S.; Rhind, N.

10.1101/092338 — cell biology — Posted on 2017-02-17

358 Variable species densities are induced by volume exclusion interactions upon domain growth.

Ross, R.; Yates, C.; Baker, R.

10.1101/061341 — systems biology — Posted on 2017-02-17

359 Improved assemblies and comparison of two ancient Yersinia pestis genomes

Luhmann, N.; Doerr, D.; Chauve, C.

10.1101/073445 — bioinformatics — Posted on 2017-02-17

360 Structural and Functional View of Polypharmacology

Moya Garcia, A.; Adeyelu, T.; Dawson, N. L.; Kruger, F. A.; Lees, J.; Overington, J.; Orengo, C.; Garcia Ranea, J. A.

10.1101/044289 — bioinformatics — Posted on 2017-02-17

361 Learning place cells, grid cells and invariances: A unifying model

Weber, S. N.; Sprekeler, H.

10.1101/102525 — neuroscience — Posted on 2017-02-17

362 Commentary on Sanborn and Chater: Posterior Modes are Attractor Basins

Alday, P.; Schlesewsky, M.; Bornkessel-Schlesewsky, I.

10.1101/109355 — neuroscience — Posted on 2017-02-17

Vij, S. G.; Nomi, J.; Dajani, D. R.; Uddin, L. Q.

10.1101/109181 — neuroscience — Posted on 2017-02-17

364 The Stochastic Early Reaction, Inhibition, and Late Action (SERIA) Model for Antisaccades SERIA - A model for errors and reaction times in the antisaccade task

Aponte Perez, E. A.; Schobi, D.; Stephan, K. E.; Heinzle, J.

10.1101/109090 — neuroscience — Posted on 2017-02-17

365 Laboratory cultivation of acidophilic nanoorganisms. Physiological and bioinformatic dissection of a stable laboratory co-culture.

Krause, S.; Bremges, A.; Muench, P. C.; McHardy, A. C.; Gescher, J.

10.1101/103150 — microbiology — Posted on 2017-02-17

366 Darker eggs resist more to desiccation: the case of melanin in Aedes, Anopheles and Culex mosquito vectors

Farnesi, L. C.; Vargas, H. C. M.; Valle, D.; Rezende, G. L.

10.1101/109223 — evolutionary biology — Posted on 2017-02-17

367 Parsing propagule pressure: Simulated and experimental disentanglement of introduction size and number of introductions for colonizing individuals

Koontz, M. J.; Oldfather, M. F.; Melbourne, B. A.; Hufbauer, R. A.

10.1101/108324 — ecology — Posted on 2017-02-17

368 Reproducibility2020: Progress and Priorities

Freedman, L.; Venugopalan, G.; Wisman, R.

10.1101/109017 — scientific communication and education — Posted on 2017-02-16

369 Holographic deep learning for rapid optical screening of anthrax spores

Jo, Y.; Park, S.; Jung, J.; Yoon, J.; Joo, H.; Kim, M.-h.; Jo, S.-J.; Choi, M. C.; Lee, S. Y.; Park, Y.

10.1101/109108 — microbiology — Posted on 2017-02-16

370 A signal detection theoretic argument against claims of unmeritocratic faculty hiring

Miuccio, M. T.; Liu, K.-y.; Lau, H.; Peters, M. A. K.

10.1101/061200 — scientific communication and education — Posted on 2017-02-16

371 Modelling Competition for Nutrients between MicrobialPopulations Growing on a Solid Agar Surface

Boocock, D.; Lawless, C.

10.1101/086835 — microbiology — Posted on 2017-02-16

372 "Opposite-of"-information improves similarity calculations in phenotype ontologies

Koehler, S.; Robinson, P. N.; Mungall, C. J.

10.1101/108977 — bioinformatics — Posted on 2017-02-16

373 Parametrically scalable memory reactivation using multiple object tracking

Poppenk, J.; Norman, K. A.

10.1101/109256 — neuroscience — Posted on 2017-02-16

374 Cyanophage-encoded lipid-desaturases: oceanic distribution, diversity and function

Roitman, S.; Hornung, E.; Flores-Uribe, J.; Sharon, I.; Feussner, I.; Beja, O.

10.1101/109157 — microbiology — Posted on 2017-02-16

375 Spatial Variation of Soil Moisture and its Effect on Lint Yield in a Deficit Irrigated Cotton Field

Wen, Y.

10.1101/109025 — ecology — Posted on 2017-02-16

376 mTORC1 controls cytoplasmic crowding by regulating ribosome concentration

Delarue, M.; Brittingham, G.; Surovtsev, I.; Kennedy, K. J.; Gutierrez, I.; Chung, J.; Groves, J. T.; Jacobs-Wagner, C.; Holt, L. J.

10.1101/073866 — cell biology — Posted on 2017-02-16

377 Translation efficiency is maintained at elevated temperature in E. coli

Morgan, G. J.; Burkhardt, D. H.; Kelly, J. W.; Powers, E. T.

10.1101/109264 — biochemistry — Posted on 2017-02-16

378 Evaluating the diagnostic utility of applying a machine learning algorithm to diffusion tensor MRI measures in individuals with major depressive disorder

Schnyer, D. M.; Clasen, P. G.; Gonzalez, C.; Beevers, C. G.

10.1101/061119 — neuroscience — Posted on 2017-02-16

379 Broadband spectral responses in visual cortex revealed by a new MEG denoising algorithm

Kupers, E. R.; Wang, H. X.; Amano, K.; Kay, K. N.; Heeger, D. J.; Winawer, J.

10.1101/108993 — neuroscience — Posted on 2017-02-16

380 Sanctions, partner recognition, and variation in mutualistic symbiosis

Yoder, J. B.; Tiffin, P.

10.1101/049593 — evolutionary biology — Posted on 2017-02-16

381 Harnessing sleep/wake state tracking by olfactory bulb oscillations to perform fully brain-based sleep scoring in mice

Bagur, S.; Lacroix, M. M.; de Lavilleon, G.; Lefort, J. M.; Geoffroy, H.; Benchenane, K.

10.1101/109033 — neuroscience — Posted on 2017-02-16

382 Treatment of Graft-versus-Host Disease by Echinomycin in a New Humanized Mouse Model

Liu, Y.; Bailey, C.; Lazarski, C.; Wong, C.-S.; Zheng, P.; Liu, Y.; Wang, Y.

10.1101/108951 — immunology — Posted on 2017-02-16

383 A new model for ancient DNA decay based on paleogenomic meta-analysis

Kistler, L.; Ware, R.; Smith, O.; Collins, M.; Allaby, R. G.

10.1101/109140 — genomics — Posted on 2017-02-16

384 Estimating environmental suitability

Drake, J.; Richards, R.

10.1101/109041 — ecology — Posted on 2017-02-16

385 A general and powerful stage-wise testing procedure for differential expression and differential transcript usage

Van den Berge, K.; Soneson, C.; Robinson, M. D.; Clement, L.

10.1101/109082 — bioinformatics — Posted on 2017-02-16

386 Hypoxia has lasting effects on fast startle behavior of a tropical fish, (Haemulon plumieri)

Sanchez-Garcia, M. A.; Zottoli, S. J.; Roberson, L. M.

10.1101/109066 — animal behavior and cognition — Posted on 2017-02-16

387 Maintaining the provenance of microscopy metadata using OMERO.forms software

Russell, D. P.; Sorger, P. K.

10.1101/109199 — scientific communication and education — Posted on 2017-02-16

388 Developmental Downregulation of LIS1 Expression Limits Axonal Extension and Allows Axon Pruning

Tagawa, H.; Kumamoto, K.; Iguchi, T.; Sato, M.; Uemura, T.

10.1101/109132 — neuroscience — Posted on 2017-02-16

389 Uncertainty in perceptual representations

Rahnev, D.

10.1101/108944 — neuroscience — Posted on 2017-02-16

390 Assessment of asymmetric cell divisions in the early development of Caenorhabditis elegans

Fickentscher, R.; Weiss, M.

10.1101/109215 — developmental biology — Posted on 2017-02-16

391 Small molecule-mediated reprogramming of epithelial-mesenchymal transition thereby blocking fibrosis

Kim, H.-S.; Kim, J.-H.; Lee, J. Y.; Yoon, Y.-M.; Kim, I.-H.; Yoon, H.-S.; Youn, B.-S.

10.1101/106591 — cell biology — Posted on 2017-02-16

392 CircularLogo: A lightweight web application to visualize intra-motif dependencies

Ye, Z.; Ma, T.; Kalmbach, M. T.; Dasari, S.; Kocher, J.-P. A.; Wang, L.

10.1101/098327 — bioinformatics — Posted on 2017-02-16

393 PhageTerm: a Fast and User-friendly Software to Determine Bacteriophage Termini and Packaging Mode using randomly fragmented NGS data

Garneau, J. R.; Depardieu, F.; Fortier, L.-C.; Bikard, D.; Monot, M.

10.1101/108100 — microbiology — Posted on 2017-02-16

394 A Central Limit Theorem for Punctuated Equilibrium

Bartoszek, K.

10.1101/039867 — evolutionary biology — Posted on 2017-02-16

395 Accuracy of demographic inferences from Site Frequency Spectrum: The case of the Yoruba population

Lapierre, M.; Lambert, A.; Achaz, G.

10.1101/078618 — evolutionary biology — Posted on 2017-02-16

396 GenoGAM: Genome-wide generalized additivemodels for ChIP-seq analysis

Stricker, G.; Engelhardt, A.; Schulz, D.; Schmid, M.; Tresch, A.; Gagneur, J.

10.1101/047464 — bioinformatics — Posted on 2017-02-16

397 Inference of maternal allele inheritance via Bayesian hierarchical model in noninvasive prenatal diagnosis

Shao, C.

10.1101/051995 — bioinformatics — Posted on 2017-02-16

398 MITE-based drives to transcriptional control of genome host

Vaschetto, L. M.

10.1101/108332 — genetics — Posted on 2017-02-16

399 Recent Regulatory Changes Shaped Human Facial and Vocal Anatomy

Gokhman, D.; Agranat-Tamir, L.; Housman, G.; Nissim-Rafinia, M.; Nieves-Colon, M.; Gu, H.; Ferrando-Bernal, M.; Gelabert, P.; Lipende, I.; Quillen, E. E.; Meissner, A.; Stone, A. C.; Pusey, A. E.; Mjungu, D.; Kandel, L.; Liebergall, M.; Prada, M. E.; Vidal, J. M.; Krause, J.; Yakir, B.; Paabo, S.; Reich, D.; Lalueza-Fox, C.; Marques-Bonet, T.; Meshorer, E.; Carmel, L.

10.1101/106955 — evolutionary biology — Posted on 2017-02-16

400 Exploring the Complex Dynamics of an Ion Channel Voltage Sensor Domain via Computation

Delemotte, L.; Kasimova, M. A.; Sigg, D.; Klein, M. L.; Carnevale, V.; TAREK, M.

10.1101/108217 — biophysics — Posted on 2017-02-16

401 The HTM Spatial Pooler: a neocortical algorithm for online sparse distributed coding

Cui, Y.; Ahmad, S.; Hawkins, J.

10.1101/085035 — neuroscience — Posted on 2017-02-16

402 LEM2 recruits CHMP7 for ESCRT-mediated nuclear envelope closure in fission yeast and human cells

Gu, M.; LaJoie, D.; Chen, O. S.; Von Appen, A.; Ladinsky, M. S.; Redd, M. J.; Nikolova, L.; Bjorkman, P. J.; Sundquist, W. I.; Ullman, K. S.; Frost, A.

10.1101/049312 — cell biology — Posted on 2017-02-16

403 Drosophila Mutants that Are Motile but Respond Poorly to All Stimuli Tested

Vang, L. L.; Adler, J.

10.1101/066423 — animal behavior and cognition — Posted on 2017-02-16

404 Impacts of Bisphenol A and Ethinyl Estradiol on Male and Female CD-1 Mouse Spleen

Gear, R. B.; Belcher, S.

10.1101/109009 — pharmacology and toxicology — Posted on 2017-02-15

405 Broadband spectral responses in visual cortex revealed by a new MEG denoising algorithm

Kupers, E. R.; Wang, H. X.; Amano, K.; Kay, K. N.; Heeger, D. J.; Winawer, J.

10.1101/108993 — neuroscience — Posted on 2017-02-15

406 Estimation of Pairwise Genetic Distances Under Independent Sampling of Segregating Sites vs. Haplotype Sampling

Shpak, M.; Ni, Y.; Lu, J.; Mueller, P.

10.1101/108928 — genetics — Posted on 2017-02-15

407 On the heritability of criminal justice processing

Boutwell, B. B.; Connolly, E.

10.1101/107748 — epidemiology — Posted on 2017-02-15

408 Unmet Needs for Analyzing Biological Big Data: A Survey of 704 NSF Principal Investigators

Barone, L.; Williams, J.; Micklos, D.

10.1101/108555 — scientific communication and education — Posted on 2017-02-15

409 A SUPERNOVA AT 50 PC: EFFECTS ON THE EARTHS ATMOSPHERE AND BIOTA

Melott, A.; Thomas, B.; Kachelriess, M.; Semikoz, D.; Overholt, A.

10.1101/108936 — paleontology — Posted on 2017-02-15

410 An encoding model of temporal processing in human visual cortex

Stigliani, A.; Jeska, B.; Grill-Spector, K.

10.1101/108985 — neuroscience — Posted on 2017-02-15

411 RNA polymerases IV and V influence the 3’ boundaries of Polymerase II transcription units in Arabidopsis

McKinlay, A.; Podicheti, R.; Cocklin, R.; Pikaard, C. S.; Rusch, D. B.

10.1101/108902 — plant biology — Posted on 2017-02-15

412 Speaker gaze changes information coupling between infant and adult brains

Leong, V.; Byrne, E.; Clackson, K.; Lam, S.; Wass, S.

10.1101/108878 — neuroscience — Posted on 2017-02-15

413 Frequency-specific directed interactions in the human brain network for language

Schoffelen, J. M.; Hulten, A.; Lam, N.; Marquand, A.; Udden, J.; Hagoort, P.

10.1101/108753 — neuroscience — Posted on 2017-02-15

414 Optimization of a free water elimination two-compartment model for diffusion tensor imaging.

Neto Henriques, R.; Rokem, A.; Garyfallidis, E.; St-Jean, S.; Peterson, E. T.; Correia, M.

10.1101/108795 — neuroscience — Posted on 2017-02-15

415 A computational model of shared fine-scale structure in the human connectome

Guntupalli, J. S.; Haxby, J. V.

10.1101/108738 — neuroscience — Posted on 2017-02-15

416 Infants’ neural oscillatory processing of theta-rate speech patterns exceeds adults’

Leong, V.; Byrne, E.; Clackson, K.; Harte, N.; Lam, S.; de Barbaro, K.; Wass, S.

10.1101/108852 — neuroscience — Posted on 2017-02-15

417 A first-in-class inhibitor of parasite FtsH disrupts plastid biogenesis in human pathogens

Amberg-Johnson, K.; Ganesan, S. M.; Lorenzi, H. A.; Niles, J. C.; Yeh, E.

10.1101/108910 — microbiology — Posted on 2017-02-15

418 PhageTerm: a Fast and User-friendly Software to Determine Bacteriophage Termini and Packaging Mode using randomly fragmented NGS data

Garneau, J. R.; Depardieu, F.; Fortier, L.-C.; Bikard, D.; Monot, M.

10.1101/108100 — microbiology — Posted on 2017-02-15

419 Multivalency drives the neutralizing activity of antibodies against the Plasmodium falciparum circumsporozoite protein

Fisher, C. R.; Kaczmarski, J. A.; Sutton, H. J.; Clifton, B.; Mitchell, J.; Cai, Y.; Dumps, J. N.; Darcy, N. J.; Singh, M.; McNamara, H. A.; Chug, A.; Peat, T.; Jackson, C. J.; Cockburn, I. A.

10.1101/108746 — immunology — Posted on 2017-02-15

420 Genome-scale genetic interactions position the Mitotic Exit Network as a major antagonist of transient Topoisomerase II deficiency.

Ramos-Perez, C.; Ayra-Plasencia, J.; Matos-Perdomo, E.; Lisby, M.; Brown, G. W.; Machin, F.

10.1101/108761 — genetics — Posted on 2017-02-15

421 Thermal adaptation constrains the temperature dependence of ecosystem metabolism

Padfield, D.; Lowe, C.; Buckling, A.; Ffrench-Constant, R.; Schaum, E.; Jennings, S.; Shelley, F.; Olafsson, J.; Yvon-Durocher, G.; Students of BIO244 Iceland Field Course,

10.1101/108696 — ecology — Posted on 2017-02-15

422 Health quality of seed potato and yield losses in Ecuador

Navarrete, I.; Panchi, N.; Kromann, P.; Forbes, G.; Andrade-Piedra, J.

10.1101/108712 — ecology — Posted on 2017-02-15

423 Integrated growth factor signaling promotes lung epithelial progenitor cell expansion and maintenance in mice and humans

Miller, A.; Dye, B.; Nagy, M.; Tsai, Y.-H.; Huang, S.; Ferguson, M.; Spence, J.

10.1101/108845 — developmental biology — Posted on 2017-02-15

424 Glycerophosphodiesterase GDE2 affects pancreas differentiation in zebrafish

van Veen, M.; van Pelt, J.; Mans, L. A.; Moolenaar, W. H.; Haramis, A.-P.

10.1101/108779 — developmental biology — Posted on 2017-02-15

425 Novel methods of isolation and amplification of progenitor cells applied to avian primordial germ cells

Lopez Diaz, M.

10.1101/108571 — developmental biology — Posted on 2017-02-15

426 Versatile Multicolor Nanodiamond Probes for Intracellular Imaging and Targeted Labeling

Shimoni, O.; Bray, K.; Cheung, L.; Aharanovich, I.; Valenzuela, S.

10.1101/108720 — biochemistry — Posted on 2017-02-15

427 Recent Regulatory Changes Shaped Human Facial and Vocal Anatomy

Gokhman, D.; Agranat Tamir, L.; Housman, G.; Nissim Rafinia, M.; Nieves Colon, M.; Gu, H.; Ferrando, M.; Gelabert, P.; Lipende, I.; Quillen, E. E.; Meissner, A.; Stone, A. C.; Pusey, A. E.; Mjungu, D.; Kandel, L.; Liebergall, M.; Prada, M. E.; Vidal, J. M.; Krause, J.; Yakir, B.; Paabo, S.; Reich, D.; Lalueza Fox, C.; Marques-Bonet, T.; Meshorer, E.; Carmel, L.

10.1101/106955 — evolutionary biology — Posted on 2017-02-15

428 What’s past is present: Reminders of past choices bias decisions for reward in humans

Bornstein, A. M.; Khaw, M. W.; Shohamy, D.; Daw, N. D.

10.1101/033910 — neuroscience — Posted on 2017-02-15

429 VREX: An Open-Source Toolbox for Creating 3D Virtual Reality Experiments

Vasser, M.; Kangsepp, M.; Magomedkerimov, M.; Kilvits, K.; Stafinjak, V.; Kivisik, T.; Vicente, R.; Aru, J.

10.1101/105858 — neuroscience — Posted on 2017-02-15

430 Antisocial rewarding in structured populations

dos Santos, M.; Pena, J.

10.1101/092932 — evolutionary biology — Posted on 2017-02-15

431 Putting value in context: A role for context memory in decisions for reward.

Bornstein, A. M.; Norman, K. A.

10.1101/033662 — neuroscience — Posted on 2017-02-15

432 An oscillopathic approach to developmental dyslexia: from genes to speech processing

Jimenez-Bravo, M.; Marrero, V.; Benitez-Burraco, A.

10.1101/108704 — neuroscience — Posted on 2017-02-14

433 Individual nucleotide resolution UV cross-linking and immunoprecipitation (iCLIP) to determine protein-RNA interactions.

Sibley, C. R.

10.1101/108118 — genomics — Posted on 2017-02-14

434 Biomedical Text Mining for Research Rigor and Integrity: Tasks, Challenges, Directions

Kilicoglu, H.

10.1101/108480 — scientific communication and education — Posted on 2017-02-14

435 Unmet Needs for Analyzing Biological Big Data: A Survey of 704 NSF Principal Investigators

Barone, L.; Williams, J.; Micklos, D.

10.1101/108555 — scientific communication and education — Posted on 2017-02-14

436 Systematic changes in temporal summation across human visual cortex

Zhou, J.; Benson, N. C.; Kay, K.; Winawer, J.

10.1101/108639 — neuroscience — Posted on 2017-02-14

437 Rapid Automated Large Structural Variation Detection in a Diploid Genome by NanoChannel Based Next-Generation Mapping

Hastie, A. R.; Lam, E. T.; Pang, A. W. C.; Zhang, X.; Andrews, W.; Lee, J.; Liang, T. Y.; Wang, J.; Zhou, X.; Zhu, Z.; Anantharaman, T.; Zdzakula, Z.; Bocklandt, S.; Surti, U.; Saghbini, M.; Austin, M.; Borodkin, M.; Holmlin, R. E.; Cao, H.

10.1101/102764 — genomics — Posted on 2017-02-14

438 Distinct DNA-binding surfaces in the ATPase and linker domains of MutLγ determine its substrate specificities and exert separable functions in meiotic recombination and mismatch repair

Claeys Bouuaert, C.; Keeney, S.

10.1101/108647 — genetics — Posted on 2017-02-14

439 Prospects for genomic selection in cassava breeding

Wolfe, M. D.; Pino Del Carpio, D.; Alabi, O.; Egesi, C.; Ezenwaka, L. C.; Ikeogu, U. N.; Kawuki, R. S.; Kayondo, I. S.; Kulakow, P.; Lozano, R.; Rabbi, I. Y.; Williams, E.; Ozimati, A. A.; Jannink, J.-L.

10.1101/108662 — genetics — Posted on 2017-02-14

440 Inferring demographic history using two-locus statistics

Ragsdale, A. P.; Gutenkunst, R. N.

10.1101/108688 — genetics — Posted on 2017-02-14

441 G protein-coupled estrogen receptor regulates heart rate and heart valve thickness in zebrafish

Romano, S. N.; Edwards, H. E.; Souder, J. P.; Cui, X.; Gorelick, D. A.

10.1101/088955 — pharmacology and toxicology — Posted on 2017-02-14

442 Single or Multi-Frequency Generators in On-going Brain Activity:a Mechanistic Whole-Brain Model of empirical MEG data

Deco, G.; Cabral, J.; Woolrich, M.; Stevner, A.; van Hartevelt, T.; Kringelbach, M.

10.1101/084103 — neuroscience — Posted on 2017-02-14

443 The regulation of tDNA transcription during the directed differentiation of stem cells.

Woolnough, J. L.; Schneider, D. A.; Giles, K. E.

10.1101/108472 — molecular biology — Posted on 2017-02-14

444 Minimal Tool Set for a Prokaryotic Circadian Clock

Schmelling, N. M.; Lehmann, R.; Chaudhury, P.; Beck, C.; Albers, S.-V. V.; Axmann, I. M. M.; Wiegard, A.

10.1101/075291 — microbiology — Posted on 2017-02-14

445 Repli-seq: genome-wide analysis of replication timing by next-generation sequencing

Marchal, C.; Sasaki, T.; Vera, D.; Wilson, K.; Sima, J.; Rivera-Mulia, J.-C.; Trevilla Garcia, C.; Nogues, C.; Nafie, E.; Gilbert, D. M.

10.1101/104653 — genomics — Posted on 2017-02-14

446 Can Ebola Virus evolve to be less virulent in humans?

Sofonea, M. T.; Aldakak, L.; Boullosa, L. F. V. V.; Alizon, S.

10.1101/108589 — evolutionary biology — Posted on 2017-02-14

447 Hosts, parasites, and their interactions respond to different climatic variables

Poisot, T.; Gueveneux-Julien, C.; Fortin, M.-J.; Gravel, D.; Legendre, P.

10.1101/079780 — ecology — Posted on 2017-02-14

448 Decoupling global biases and local interactions between cell biological variables

Zaritsky, A.; Obolski, U.; Gan, Z.; Reis, C. R.; Kadlecova, Z.; Du, Y.; Schmid, S. L.; Danuser, G.

10.1101/038059 — cell biology — Posted on 2017-02-14

449 A generator of morphological clones for plant species

Potapov, I.; Jarvenpaa, M.; Akerblom, M.; Raumonen, P.; Kaasalainen, M.

10.1101/108530 — systems biology — Posted on 2017-02-14

450 Identification of the primary peptide inhibitor contaminant of fibrillation and toxicity in synthetic Amyloid-β42

Adams, D. J.; Nemkov, T. G.; Mayer, J. P.; Old, W. M.; Stowell, M. H. B.

10.1101/108563 — neuroscience — Posted on 2017-02-14

451 Schizophrenia and human self-domestication: an evolutionary linguistics approach

Benitez-Burraco, A.; Di Pietro, L.; Barba, M.; Lattanzi, W.

10.1101/072751 — neuroscience — Posted on 2017-02-14

452 Spatial tuning shifts increase the discriminability and fidelity of population codes in visual cortex

Vo, V. A.; Sprague, T.; Serences, J.

10.1101/086892 — neuroscience — Posted on 2017-02-14

453 Cardiac events after macrolides or fluoroquinolones in patients hospitalized for community-acquired pneumonia: post-hoc analysis of a cluster-randomized trial

Postma, D. F.; Spitoni, C.; van Werkhoven, C. H.; van Elden, L. J. R.; Oosterheert, J. J.; Bonten, M. J. M.

10.1101/108407 — epidemiology — Posted on 2017-02-14

454 Synthetic DNA templates for the production of in situ hybridization probes

Jarvis, B. R.; Condie, B. G.

10.1101/108613 — developmental biology — Posted on 2017-02-14

455 A Sign of Disparity: Racial/Ethnic Composition of Treatment Centers is an Independent Risk Factor in SPRINT Trial

Matlock, M.; Dang, N. L.; Brown, D.; Swamidass, S. J.

10.1101/102111 — clinical trials — Posted on 2017-02-14

456 Knock down of Calcineurin-B2, a calcium binding regulatory subunit of Calcineurin, gives rise to hypercontraction myopathy in indirect flight muscles of Drosophila through dysregulation of calcium homeostasis

Jhonsa, R.; Nongthomba, U.

10.1101/108605 — cell biology — Posted on 2017-02-14

457 Evaluation of anticancer and anti-mitotic properties of quinazoline and quinazolino-benzothiadiazine derivatives

Shaik, T. B.; Malik, M. S.; Seddigi, Z. S.; Rani, S.; Kamal, A.

10.1101/108654 — cancer biology — Posted on 2017-02-14

458 mixOmics: an R package for ‘omics feature selection and multiple data integration

Rohart, F.; Gautier, B.; Singh, A.; Le Cao, K.-A.

10.1101/108597 — bioinformatics — Posted on 2017-02-14

459 Adaptation of the Arizona Cognitive Task Battery for use with the Ts65Dn Mouse Model of Down Syndrome

Hunsaker, M. R.; Smith, G. K.; Kesner, R. P.

10.1101/061754 — animal behavior and cognition — Posted on 2017-02-14

460 Sparse synaptic connectivity is required for decorrelation and pattern separation in feedforward networks

Cayco-Gajic, A.; Clopath, C.; Silver, R. A.

10.1101/108431 — neuroscience — Posted on 2017-02-14

461 A minimal set of internal control genes for gene expression studies in head and neck squamous cell carcinoma

Palve, V.; Pareek, M.; Krishnan, N. M.; Siddappa, G.; Suresh, A.; Kuriakose, M. A.; Panda, B.

10.1101/108381 — cancer biology — Posted on 2017-02-14

462 Neutrophil elastase inhibitor sivelestat ameliorates gefitinib-naphthalene-induced acute pneumonitis in mice

Mikumo, H.; Yanagihara, T.; Hamada, N.; Harada, E.; Suetsugu, S. O.; Harada, C. I.; Omori, M. A.; Suziki, K.; Yokoyama, T.; Nakanishi, Y.

10.1101/108464 — pharmacology and toxicology — Posted on 2017-02-14

463 NoRMCorre: An online algorithm for piecewise rigid motion correction of calcium imaging data

Pnevmatikakis, E. A.; Giovannucci, A.

10.1101/108514 — neuroscience — Posted on 2017-02-14

464 Resting-state network dysfunction in Alzheimer’s disease: a systematic review and meta-analysis

Badhwar, A.; Tam, A.; Dansereau, C.; Orban, P.; Hoffstaedter, F.; Bellec, P.

10.1101/108282 — neuroscience — Posted on 2017-02-14

465 The regulation of tDNA transcription during the directed differentiation of stem cells.

Woolnough, J. L.; Schneider, D. A.; Giles, K. E.

10.1101/108472 — molecular biology — Posted on 2017-02-14

466 Ongoing human chromosome end extension driven by a primate ancestral genomic region revealed by analysis of BioNano genomics data

Shao, H.; Zhou, C.; Cao, M. D.; Coin, L.

10.1101/108365 — genomics — Posted on 2017-02-14

467 A rare IL2RA haplotype identifies SNP rs61839660 as causal for autoimmunity

Rainbow, D. B.; Pekalski, M. L.; Cutler, A.; Burren, O. S.; Walker, N.; Todd, J.; Wallace, C.; Wicker, L.

10.1101/108126 — genetics — Posted on 2017-02-14

468 mlh3 separation of function and endonuclease defective mutants display an unexpected effect on meiotic recombination outcomes

Al-Sweel, N.; Raghavan, V.; Dutta, A.; Ajith, V.; Di Vietro, L.; Khondakar, N.; Manhart, C.; Surtees, J.; Nishant, K.; Alani, E.

10.1101/108498 — genetics — Posted on 2017-02-14

469 Biological invasions in rodent communities: from ecological interactions to zoonotic bacterial infection issues

Diagne, C. A.; Galan, M.; Tamisier, L.; d'Ambrosio, J.; Dalecky, A.; Ba, K.; Kane, M.; Niang, Y.; Diallo, M.; Sow, A.; Loiseau, A.; Tatard, C.; Fossati-Gaschignard, O.; Sembene, M.; Cosson, J.-F.; Charbonnel, N.; Brouat, C.

10.1101/108423 — ecology — Posted on 2017-02-14

470 Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica

Zhou, Z.; Lundstrom, I.; Tran-Dien, A.; Duchene, S.; Alikhan, N.-F.; Sergeant, M. J.; Langridge, G.; Fotakis, A. K.; Nair, S.; Stenoien, H. K.; Hamre, S. S.; Casjens, S.; Christophersen, A.; Quince, C.; Thomson, N. R.; Weill, F.-X.; Ho, S. Y. W.; Gilbert, M. T. P.; Achtman, M.

10.1101/105759 — microbiology — Posted on 2017-02-14

471 A whole-genome-based approach for estimation and characterization of individual inbreeding

Druet, T.; Gautier, M.

10.1101/106765 — genetics — Posted on 2017-02-14

472 Evaluating Methods of Updating Training Data in Long-Term Genomewide Selection

Neyhart, J. L.; Tiede, T.; Lorenz, A. J.; Smith, K. P.

10.1101/087163 — genetics — Posted on 2017-02-14

473 Recent Regulatory Changes Shaped the Human Facial and Vocal Anatomy

10.1101/106955 — evolutionary biology — Posted on 2017-02-14

474 Disentangling the Relative Strength of Niche Competition from Grazing-Induced Phytoplankton Mortality

Beckett, S. J.; Weitz, J. S.

10.1101/072231 — ecology — Posted on 2017-02-14

475 Fidelity of parent-offspring transmission and the evolution of social behavior in structured populations

Debarre, F.

10.1101/082503 — evolutionary biology — Posted on 2017-02-14

476 Direct estimation of the spontaneous mutation rate by short-term mutation accumulation lines in Chironomus riparius

Oppold, A.-M.; Pfenninger, M.

10.1101/086207 — evolutionary biology — Posted on 2017-02-14

477 McClintock: An integrated pipeline for detecting transposable element insertions in whole genome shotgun sequencing data.

Nelson, M. G.; Linheiro, R. S.; Bergman, C. M.

10.1101/095372 — bioinformatics — Posted on 2017-02-14

478 In vivo structures of an intact type VI secretion system revealed by electron cryotomography

Chang, Y.-W.; Rettberg, L. A.; Jensen, G. J.

10.1101/108233 — microbiology — Posted on 2017-02-14

479 Extremely rare variants reveal patterns of germline mutation rate heterogeneity in humans

Carlson, J.; Scott, L. J.; Locke, A. E.; Flickinger, M.; Levy, S.; The BRIDGES Consortium, ; Myers, R. M.; Boehnke, M.; Kang, H. M.; Li, J. Z.; Zollner, S.

10.1101/108290 — genomics — Posted on 2017-02-14

480 Modeling prediction error improves power of transcriptome-wide association studies

Bhutani, K.; Sarkar, A.; Park, Y.; Kellis, M.; Schork, N. J.

10.1101/108316 — genetics — Posted on 2017-02-14

481 microCT-Based Skeletal Phenomics in Zebrafish Reveals Virtues of Deep Phenotyping at the Whole-Organism Scale

Hur, M.; Gistelinck, C. A.; Huber, P.; Lee, J.; Thompson, M. H.; Monstad-Rios, A. T.; Watson, C. J.; McMenamin, S. K.; Willaert, A.; Parichy, D. M.; Coucke, P.; Kwon, R. Y.

10.1101/105569 — genetics — Posted on 2017-02-14

482 MITE-based drives to transcriptional control of genome host

Vaschetto, L. M.

10.1101/108332 — genetics — Posted on 2017-02-14

483 The Rise of the Middle Author: Investigating Collaboration and Division of Labor in Biomedical Research using Partial Alphabetical Authorship

Mongeon, P.; Smith, E.; Joyal, B.; Lariviere, V.

10.1101/108357 — scientific communication and education — Posted on 2017-02-14

484 Oestrogenic vascular effects are diminished by ageing

Nicholson, C. J.; Sweeney, M.; Robson, S. C.; Taggart, M. J.

10.1101/108274 — physiology — Posted on 2017-02-14

485 The power of a multivariate approach to genome-wide association studies: an example with Drosophila melanogaster wing shape

Pitchers, W. R.; Nye, J.; Marquez, E. J.; Kowalski, A.; Dworkin, I.; Houle, D.

10.1101/108308 — genetics — Posted on 2017-02-14

486 The transcriptional basis of quantitative behavioral variation

Benowitz, K. M.; McKinney, E. C.; Cunningham, C. B.; Moore, A. J.

10.1101/108266 — genetics — Posted on 2017-02-14

487 Shifting microbial communities sustain multi-year iron reduction and methanogenesis in ferruginous sediment incubations

Bray, M. S.; Wu, J.; Reed, B. C.; Kretz, C. B.; Belli, K. M.; Simister, R. L.; Henny, C.; Stewart, F. J.; DiChristina, T. J.; Brandes, J. A.; Fowle, D. A.; Crowe, S. A.; Glass, J. B.

10.1101/087783 — microbiology — Posted on 2017-02-13

488 Rubin-vase percept is predicted by prestimulus coupling of category-sensitive occipital regions with frontal cortex

Peatfield, N.; Muller, N.; Ruhnau, P.; Weisz, N.

10.1101/107714 — neuroscience — Posted on 2017-02-13

489 Spodoptera exigua caterpillar feeding induces rapid defense responses in maize leaves

Tzin, V.; Hojo, Y.; Strickler, S. R.; Bartsch, L. J.; Archer, C. M.; Ahern, K. R.; Christensen, S. A.; Galis, I.; Mueller, L. A.; Jander, G.

10.1101/108076 — plant biology — Posted on 2017-02-13

490 Uncharacterized bacterial structures revealed by electron cryotomography

Dobro, M. J.; Oikonomou, C. M.; Piper, A.; Cohen, J.; Guo, K.; Jensen, T.; Tadayon, J.; Donermeyer, J.; Park, Y.; Solis, B. A.; Kjaer, A.; Jewett, A. I.; McDowall, A. W.; Chen, S.; Chang, Y.-W.; Shi, J.; Subramanian, P.; Iancu, C. V.; Li, Z.; Briegel, A.; Tocheva, E. I.; Pilhofer, M.; Jensen, G. J.

10.1101/108191 — microbiology — Posted on 2017-02-13

491 HIC1 links retinoic acid signalling to group 3 innate lymphoid cell-dependent regulation of intestinal immunity and homeostasis

Burrows, K.; Antignano, F.; Chenery, A.; Korinek, V.; Underhill, T. M.; Zaph, C.

10.1101/108241 — immunology — Posted on 2017-02-13

492 Caenorhabditis elegans BMP Transcriptional ProgramImplicates Collagen Genes in Body Size Regulation

Madaan, U.; Yzeiraj, E.; Meade, M.; Rushlow, C. A.; Savage-Dunn, C.

10.1101/108225 — genetics — Posted on 2017-02-13

493 Exploring the Complex Dynamics of an Ion Channel Voltage Sensor Domain via Computation

Delemotte, L.; Kasimova, M.; Sigg, D.; Klein, M. L.; Carnevale, V.; TAREK, M.

10.1101/108217 — biophysics — Posted on 2017-02-13

494 Short term changes in the proteome of human cerebral organoids induced by 5-methoxy-N,N-dimethyltryptamine

Dakic, V.; Nascimento, J. M.; Sartore, R. C.; de Moraes Maciel, R.; de Araujo, D. B.; Ribeiro, S.; Martins-de-Souza, D.; Rehen, S. K.

10.1101/108159 — neuroscience — Posted on 2017-02-13

495 Structure of the archaellar motor and associated cytoplasmic cone in Thermococcus kodakaraensis

Briegel, A.; Oikonomou, C. M.; Chang, Y.-W.; Kjaer, A.; Huang, A. N.; Kim, K. W.; Ghosal, D.; Gunsalus, R. P.; Jensen, G. J.

10.1101/108209 — cell biology — Posted on 2017-02-13

496 Iroki: automatic customization for phylogenetic trees

Moore, R. M.; Harrison, A. O.; McAllister, S. M.; Marine, R. L.; Chan, C.; Wommack, K. E.

10.1101/106138 — bioinformatics — Posted on 2017-02-13

497 Ciliomotor circuitry underlying whole-body coordination of ciliary activity in the Platynereis larva

Veraszto, C.; Ueda, N.; Bezares-Calderon, L. A.; Panzera, A.; Williams, E. A.; Shahidi, R.; Jekely, G.

10.1101/108035 — neuroscience — Posted on 2017-02-13

498 Single cell transcriptome analysis of human pancreas reveals transcriptional signatures of aging and somatic mutation patterns.

Enge, M.; Arda, H. E.; Mignardi, M.; Beausang, J.; Bottino, R.; Kim, S. K.; Quake, S. R.

10.1101/108043 — genomics — Posted on 2017-02-13

499 Population dynamics of mutualism and intraspecific density dependence:how θ-logistic-like density dependence affects mutualistic positive feedback

Moore, C. M.; Catella, S. A.; Abbott, K. C.

10.1101/108175 — ecology — Posted on 2017-02-13

500 The rapid evolution of alternative splicing in plants

Ling, Z.; Brockmoeller, T.; Baldwin, I. T.; Xu, S.

10.1101/107938 — plant biology — Posted on 2017-02-13

501 Spodoptera exigua caterpillar feeding induces rapid defense responses in maize leaves

Tzin, V.; Hojo, Y.; Strickler, S. R.; Bartsch, L. J.; Archer, C. M.; Ahern, K. R.; Christensen, S. A.; Galis, I.; Mueller, L. A.; Jander, G.

10.1101/108076 — plant biology — Posted on 2017-02-13

502 Inferring decoding strategies for multiple correlated neural populations

Lakshminarasimhan, K.; Pouget, A.; DeAngelis, G.; Angelaki, D.; Pitkow, X.

10.1101/108019 — neuroscience — Posted on 2017-02-13

503 Plaques formed by mutagenized viral populations have elevated co-infection frequencies

Aguilera, E. R.; Erickson, A. K.; Jesudhasan, P. R.; Robinson, C. M.; Pfeiffer, J. K.

10.1101/108092 — microbiology — Posted on 2017-02-13

504 Integrative cross tissue analysis of gene expression identifies novel type 2 diabetes genes

Torres, J. M.; Barbeira, A. N.; Bonazzola, R.; Morris, A. P.; Shah, K. P.; Wheeler, H. E.; Bell, G.; Cox, N. J.; Im, H. K.

10.1101/108134 — genetics — Posted on 2017-02-13

505 Function of the Arabidopsis kinesin-4, FRA1, requires abundant processive motility

Ganguly, A.; DeMott, L.; Dixit, R.

10.1101/107870 — cell biology — Posted on 2017-02-13

506 dRep: A tool for fast and accurate genome de-replication that enables tracking of microbial genotypes and improved genome recovery from metagenomes

Olm, M. R.; Brown, C. T.; Brooks, B.; Banfield, J. F.

10.1101/108142 — bioinformatics — Posted on 2017-02-13

507 Physiological and biochemical changes associated with experimental dehydration in the desert adapted cactus mouse, Peromyscus eremicus

Kordonowy, L.; Lombardo, K.; Green, H. L.; Dawson, M.; LaCourse, S.; Bolton, E.; MacManes, M. D.

10.1101/047704 — zoology — Posted on 2017-02-13

508 Intron Length and Recursive Sites are Major Determinants of Splicing Efficiency in Flies

Pai, A. A.; Henriques, T.; Paggi, J.; Burkholder, A.; Adelman, K.; Burge, C. B.

10.1101/107995 — genomics — Posted on 2017-02-13

509 Duplication events downstream of IRX1 cause North Carolina macular dystrophy at the MCDR3 locus

Cipriani, V.; Silva, R. S.; Arno, G.; Pontikos, N.; Kalhoro, A.; Valeina, S.; Inashkina, I.; Audere, M.; Rutka, K.; Puech, B.; Michaelides, M.; van Heyningen, V.; Lace, B.; Webster, A. R.; Moore, A. T.

10.1101/107573 — genomics — Posted on 2017-02-13

510 Field-based species identification in eukaryotes using single molecule, real-time sequencing.

Parker, J.; Helmstetter, A. J.; Devey, D. S.; Papadopulos, A. S. T.

10.1101/107656 — evolutionary biology — Posted on 2017-02-13

511 Bursting on a two states stochastic model for gene transcription in Drosophila embryos

Yvinec, R.; da Silva, L. G. S.; Prata, G. N.; Reinitz, J.; Ferreira Ramos, A.

10.1101/107979 — developmental biology — Posted on 2017-02-13

512 The Deubiquitylating Enzyme Ubp12 Regulates Rad23-Dependent Substrate Delivery at the Proteasome

Godderz, D.; Dantuma, N. P.

10.1101/108068 — cell biology — Posted on 2017-02-13

513 Functional determinants of protein assembly into homomeric complexes

Bergendahl, T.; Marsh, J. A.

10.1101/081745 — bioinformatics — Posted on 2017-02-13

514 Topslam: Waddington Landscape Recovery for SingleCell Experiments

Zwiessele, M.; Lawrence, N. D.

10.1101/057778 — bioinformatics — Posted on 2017-02-13

515 The critical role of composition-independent temporal and autism pathologic changes in the human brain transcriptome

Yu, Q.; He, Z.

10.1101/065292 — bioinformatics — Posted on 2017-02-12

516 NeuroGFX: a graphical functional explorer for fruit fly brain circuits

Yeh, C.-H.; Zhou, Y.; Ukani, N. H.; Lazar, A. A.

10.1101/092437 — neuroscience — Posted on 2017-02-12

517 Regulation of the JMJD3 (KDM6B) histone demethylase in glioblastoma stem cells by STAT3

Sherry-Lynes, M. M.; Sengupta, S.; Kulkarni, S.; Cochran, B. H.

10.1101/063040 — cancer biology — Posted on 2017-02-12

518 Neural decoding of visual stimuli varies with fluctuations in global network efficiency

Cocchi, L.; Yang, Z.; Zalesky, A.; Stelzer, J.; Hearne, L.; Gollo, L. L.; Mattingley, J. B.

10.1101/107888 — neuroscience — Posted on 2017-02-12

519 Response to nitrogen addition reveals metabolic and ecological strategies of soil bacteria

Samad, M. S.; Johns, C.; Richards, K. G.; Lanigan, G. J.; de Klein, C. A. M.; Clough, T. J.; Morales, S. E.

10.1101/107961 — microbiology — Posted on 2017-02-12

520 Eye-Movement Reinstatement and Neural Reactivation: Testing the Hebbian Theory of Mental Imagery

Bone, M. B.; St-Laurent, M.; Dang, C.; McQuiggan, D. A.; Ryan, J. D.; Buchsbaum, B. R.

10.1101/107953 — neuroscience — Posted on 2017-02-12

521 Denitrification of water in a microbial fuel cell (MFC) using seawater bacteria

Maruvada V.V., N. S.; Kaza, K. R.; Ruggeri, B.; Tommasi, T.

10.1101/107904 — bioengineering — Posted on 2017-02-12

522 Response Adjusted for Days of Antibiotic Risk (RADAR): evaluation of a novel method to analyze antibiotic stewardship interventions

Schweitzer, V. A.; van Smeden, M.; Postma, D. F.; Oosterheert, J. J.; Bonten, M. J. M.; van Werkhoven, C. H.

10.1101/107300 — epidemiology — Posted on 2017-02-12

523 Inferring a qualitative contact rate index of uncertain epidemics

Angulo, M. T.; Velasco-Hernandez, J. X.

10.1101/107474 — epidemiology — Posted on 2017-02-12

524 Neutral and niche dynamics in a synthetic microbial community

Cira, N. J.; Pearce, M. T.; Quake, S. R.

10.1101/107896 — microbiology — Posted on 2017-02-12

525 Duplication events downstream of IRX1 cause North Carolina macular dystrophy at the MCDR3 locus

10.1101/107573 — genomics — Posted on 2017-02-12

526 A sensitized mutagenesis screen in Factor V Leiden mice identifies novel thrombosis suppressor loci

Westrick, R. J.; Tomberg, K.; Siebert, A. E.; Zhu, G.; Winn, M. E.; Dobies, S. L.; Manning, S. L.; Brake, M. A.; Cleuren, A.; Hobbls, L. M.; Mishack, L. M.; Johnston, A.; Kotnik, E. N.; Siemieniak, D. R.; Xu, J.; Li, J. Z.; Saunders, T. L.; Ginsburg, D.

10.1101/080432 — genetics — Posted on 2017-02-12

527 Highly efficient maternal-fetal Zika virus transmission in pregnant rhesus macaques

Nguyen, S. M.; Antony, K. M.; Dudley, D. M.; Kohn, S.; Simmons, H.; Wolfe, B.; Salamat, M. S.; Teixeira, L. B.; Wiepz, G. J.; Thoong, T. H.; Aliota, M. T.; Weiler, A. M.; Barry, G. L.; Weisgrau, K. L.; Vosler, L. J.; Mohns, M. S.; Breitbach, M. E.; Stewart, L. M.; Rasheed, M. N.; Newman, C. M.; Graham, M. E.; Wieben, O. E.; Turski, P. A.; Johnson, K. M.; Post, J.; Hayes, J. M.; Schultz-Darken, N.; Schotzko, M. L.; Eudailey, J. A.; Permar, S. R.; Rakasz, E. G.; Mohr, E. L.; Capuano, S.; Tarantal, A. F.; Osorio, J. E.; O'Connor, S. L.; Friedrich, T. C.; O'Connor, D. H.; Golos, T. G.

10.1101/106674 — pathology — Posted on 2017-02-11

528 Pattern separation of spiketrains by individual granule cells of the dentate gyrus

Madar, A. D.; Ewell, L. A.; Jones, M. V.

10.1101/107706 — neuroscience — Posted on 2017-02-11

529 Model-free reinforcement learning operates over information stored in working-memory to drive human choices

Feher da Silva, C.; Yao, Y.-W.; Hare, T. A.

10.1101/107698 — neuroscience — Posted on 2017-02-11

530 The effect of smoking on the brain revealed by using electronic cigarettes with concurrent fMRI

Wall, M. B.; Mentink, A.; Lyons, G.; Kowalczyk, O. S.; Demetriou, L.; Newbould, R. D.

10.1101/107771 — neuroscience — Posted on 2017-02-11

531 Rubin-vase percept is predicted by prestimulus coupling of category-sensitive occipital regions with frontal cortex

Peatfield, N.; Muller, N.; Ruhnau, P.; Weisz, N.

10.1101/107714 — neuroscience — Posted on 2017-02-11

532 VICTOR: Genome-based Phylogeny and Classification of Prokaryotic Viruses

Meier-Kolthoff, J. P.; Goeker, M.

10.1101/107862 — evolutionary biology — Posted on 2017-02-11

533 Variability in fitness effects and the limitations of lineage selection

Graves, C. J.; Weinreich, D. M.

10.1101/107847 — evolutionary biology — Posted on 2017-02-11

534 Rapid evolution slows extinctions in food webs

Zee, P. C.; terHorst, C. P.; Schreiber, S. J.

10.1101/107763 — ecology — Posted on 2017-02-11

535 Short CT-rich motifs encoded within σ54 promoters insulate downstream genes from transcriptional read-through

Levy, L.; Anavy, L.; Solomon, O.; Cohen, R.; Ohayon, S.; Atar, O.; Goldberg, S.; Yakhini, Z.; Amit, R.

10.1101/086108 — systems biology — Posted on 2017-02-11

536 Recovery of genomes from metagenomes via a dereplication, aggregation, and scoring strategy

Sieber, C. M. K.; Probst, A. J.; Sharrar, A.; Thomas, B. C.; Hess, M.; Tringe, S. G.; Banfield, J. F.

10.1101/107789 — microbiology — Posted on 2017-02-11

537 Label-free identification of non-activated lymphocytes using three-dimensional refractive index tomography and machine learning

Yoon, J.; Jo, Y.; Kim, M.-h.; Kim, K.; Lee, S.; Kang, S.-J.; Park, Y.

10.1101/107805 — immunology — Posted on 2017-02-11

538 I3S Classic and Insect Species Identification of Diptera and Hymenoptera (Mosquitoes and Bees).

Vyas-Patel, N.; Mumford, J. D.

10.1101/090621 — ecology — Posted on 2017-02-11

539 SIRT3-dependent mitochondrial oxidative stress in sodium fluoride-induced hepatotoxicity and salvage by melatonin

Song, C.; Zhao, J.; Zhang, J.; Mao, T.; Fu, B.; Wu, H.; Zhang, Y.

10.1101/107813 — cell biology — Posted on 2017-02-11

540 HTSvis: A web app for exploratory data analysis and visualization of arrayed high-throughput screens

Scheeder, C.; Heigwer, F.; Boutros, M.

10.1101/107821 — bioinformatics — Posted on 2017-02-11

541 Drosophila Mutants that Are Motile but Respond Poorly to All Stimuli Tested

Vang, L. L.; Adler, J.

10.1101/066423 — animal behavior and cognition — Posted on 2017-02-11

542 Inferring intracellular signal transduction circuitry from molecular perturbation experiments

Wynn, M. L.; Egber, M.; Consul, N.; Chang, J.; Wu, Z.-F.; Meravjer, S. D.; Schnell, S.

10.1101/107730 — systems biology — Posted on 2017-02-10

543 Contextual diversity of the human cell-essential proteome

Bertomeu, T.; Coulombe-Huntington, J.; Chatr-Aryamontri, A.; Bourdages, K.; Xia, Y.; Tyers, M.

10.1101/107797 — genomics — Posted on 2017-02-10

544 SUPERMAN prevents stamen formation and promotes stem cell termination in the fourth whorl of the Arabidopsis flower

Prunet, N.; Yang, W.; Das, P.; Meyerowitz, E. M.; Jack, T. P.

10.1101/107722 — developmental biology — Posted on 2017-02-10

545 A simple centrifugation protocol leads to a 55-fold mitochondrial DNA enrichment and paves the way for future mitogenomic research

Macher, J. N.; Zizka, V.; Weigand, A. M.; Leese, F.

10.1101/106583 — molecular biology — Posted on 2017-02-10

546 Single-Neuron Gene Expression Analysis Using the Maxwell 16 LEV System in the Neural Systems and Behavior Course

Harris, R. M.; Otopalik, A. G.; Smith, C. J.; Bucher, D.; Golowasch, J.; Hofmann, H. A.; Promega Corporation,

10.1101/107342 — neuroscience — Posted on 2017-02-10

547 Targeted sequencing of venom genes from cone snail genomes reveals coupling between dietary breadth and conotoxin diversity

Phuong, M. A.; Mahardika, G. N.

10.1101/107672 — evolutionary biology — Posted on 2017-02-10

548 Stochastic satisficing account of choice and confidence in uncertain value-based decisions

Hertz, U.; Bahrami, B.; Keramati, M.

10.1101/107532 — neuroscience — Posted on 2017-02-10

549 A memory of recent oxygen experience switches pheromone valence in C. elegans

Fenk, L. A.; de Bono, M.

10.1101/107524 — neuroscience — Posted on 2017-02-10

550 Inhibition of histone deacetylase 1 or 2 reduces microglia activation through a gene expression independent mechanism.

Durham, B. S.; Grigg, R.; Wood, I. C.

10.1101/107649 — neuroscience — Posted on 2017-02-10

551 Multidimensional encoding of brain connectomes

Caiafa, C. F.; Pestilli, F.

10.1101/107607 — neuroscience — Posted on 2017-02-10

552 An Organelle-like Structure Correlated with the Quiescent State of Bacterial Cells

Yu, J.; Liu, Y.; Chang, Z.

10.1101/107466 — microbiology — Posted on 2017-02-10

553 Engineering Microbial Physiology with Synthetic Polymers: Cationic Polymers Induce Biofilm Formation in Vibrio cholerae and Downregulate the Expression of Virulence Genes.

Perez-Soto, N.; Moule, L.; Crisan, D. N.; Insua, I.; Taylor-Smith, L. M.; Voelz, K.; Fernandez-Trillo, F.; Krachler, A.

10.1101/066563 — microbiology — Posted on 2017-02-10

554 Stratified Linkage Disequilibrium Score Regression reveals enrichment of eQTL effects on complex traits is not tissue specific

Ip, H.; Jansen, R.; Abdellaoui, A.; Bartels, M.; Boomsma, D. I.; Nivard, M. G.

10.1101/107482 — genomics — Posted on 2017-02-10

555 Neo-sex chromosomes in the Monarch butterfly, Danaus plexippus

Mongue, A. J.; Nguyen, P.; Volenikova, A.; Walters, J. R.

10.1101/036483 — genomics — Posted on 2017-02-10

556 Single-cell transcriptomics of malaria parasites

Reid, A. J.; Talman, A. M.; Bennett, H. M.; Gomes, A. R.; Sanders, M. J.; Illingworth, C. J. R.; Billker, O.; Berriman, M.; Lawniczak, M. K. N.

10.1101/105015 — genomics — Posted on 2017-02-10

557 Wild tobacco genomes reveal the evolution of nicotine biosynthesis

Xu, S.; Brockmoeller, T.; Navarro-Quezada, A.; Kuhl, H.; Gase, K.; Ling, Z.; Zhou, W.; Kreitzer, C.; Stanke, M.; Tang, H.; Lyons, E.; Pandey, P.; Pandey, S. P.; Timmermann, B.; Gaquerel, E.; Baldwin, I. T.

10.1101/107565 — genomics — Posted on 2017-02-10

558 Multi-tissue polygenic models for transcriptome-wide association studies

Park, Y.; Sarkar, A. K.; Bhutani, K.; Kellis, M.

10.1101/107623 — genetics — Posted on 2017-02-10

559 The maternal genetic make-up of the Iberian Peninsula between the Neolithic and the Early Bronze Age

Szecsenyi-Nagy, A.; Roth, C.; Guido, B.; Rihuete-Herrada, C.; Tejedor-Rodriguez, C.; Held, P.; Garcia-Martinez-de-Lagran, I.; Arcusa Magallon, H.; Zesch, S.; Knipper, C.; Banffy, E.; Friedrich, S.; Meller, H.; Bueno-Ramirez, P.; Barroso Bermejo, R.; de Balbin Behrmann, R.; Herrero-Coral, A. M.; Flores Fernandez, R.; Alonso Fernandez, C.; Jimenez Echevarria, J.; Rindlisbacher, L.; Oliart, C.; Fregeiro, M.-I.; Soriano, I.; Vincente, O.; Mico, R.; Lull, V.; Soler Diaz, J.; Lopez Padilla, J. A.; Roca de Togores Munoz, C.; Hernandez Perez, M. S.; Jover Maestre, F. J.; Lomba Maurandi, J.; Aviles Fer

10.1101/106963 — genetics — Posted on 2017-02-10

560 Field-based species identification in eukaryotes using single molecule, real-time sequencing.

Parker, J.; Helmstetter, A. J.; Devey, D. S.; Papadopulos, A. S. T.

10.1101/107656 — evolutionary biology — Posted on 2017-02-10

561 Genomic contingencies and beak shape variation in a hybrid species

Runemark, A.; Pineiro Fernandez, L.; Eroukhmanoff, F.; Saetre, G.-P.

10.1101/107490 — evolutionary biology — Posted on 2017-02-10

562 Variation and constraints in hybrid genome formation

Runemark, A.; Trier, C. N.; Eroukhmanoff, F.; Hermansen, J. S.; Matschiner, M.; Ravinet, M.; Elgvin, T. O.; Saetre, G.-P.

10.1101/107508 — evolutionary biology — Posted on 2017-02-10

563 Global cropland connectivity: A risk factor for invasion and saturation by emerging pathogens and pests

Xing, Y.; Hernandez Nopsa, J.; Andrade-Piedra, J.; Beed, F.; Blomme, G.; Carvajal Yepes, M.; Coyne, D.; Forbes, G.; Kreuze, J.; Kroschel, J.; Kumar, L.; Legg, J.; Parker, M.; Schulte-Geldermann, E.; Garrett, K.

10.1101/106542 — ecology — Posted on 2017-02-10

564 Pathogen mitigation in an Ecuadorian potato seed system: Insights from network analysis

Hernandez Nopsa, J.; Buddenhagen, C.; Andersen, K.; Andrade-Piedra, J.; Forbes, G.; Kromann, P.; Thomas-Sharma, S.; Useche, P.; Garrett, K.

10.1101/107367 — ecology — Posted on 2017-02-10

565 Analyzing Key Nodes and Epidemic Risk in Seed Networks: Sweetpotato in Northern Uganda

Andersen, K.; Buddenhagen, C.; Rachkara, P.; Gibson, R.; Kalule, S.; Phillips, D.; Garrett, K.

10.1101/107359 — ecology — Posted on 2017-02-10

566 A high-resolution mRNA expression time course of embryonic development in zebrafish

White, R. J.; Collins, J. E.; Sealy, I. M.; Wali, N.; Dooley, C. M.; Digby, Z.; Murphy, D. N.; Hourlier, T.; Fullgrabe, A.; Davis, M. P.; Enright, A. J.; Busch-Nentwich, E. M.

10.1101/107631 — developmental biology — Posted on 2017-02-10

567 Multiscale quantification of tissue behavior during amniote embryo axis elongation

Benazeraf, B.; Beaupeux, M.; Tchernookov, M.; Wallingford, A.; Salisbury, T.; Shirtz, A.; Shirtz, A.; Huss, D.; Pourquie, O.; Francois, P.; Lansford, R.

10.1101/053124 — developmental biology — Posted on 2017-02-10

568 Viscoelastic dissipation stabilizes cell shape changes during tissue morphogenesis

Clement, R.; Collinet, C.; Dehapiot, B.; Lecuit, T.; Lenne, P.-F.

10.1101/107557 — developmental biology — Posted on 2017-02-10

569 Enzymatic production of single molecule FISH and RNA capture probes

Gaspar, I.; Wippich, F.; Ephrussi, A.

10.1101/107599 — cell biology — Posted on 2017-02-10

570 High-Throughput Controlled Mechanical Stimulation and Functional Imaging In Vivo

Cho, Y.; Porto, D. A.; Hwang, H.; Grundy, L. J.; Schafer, W. R.; Lu, H.

10.1101/107318 — bioengineering — Posted on 2017-02-10

571 Early transcriptome analysis of the brown streak virus-cassava pathosystem provides molecular insights into virus susceptibility and resistance

Anjanappa, R. B.; Mehta, D.; Okoniewski, M. J.; Szabelska, A.; Gruissem, W.; Vanderschuren, H.

10.1101/100552 — plant biology — Posted on 2017-02-10

572 Between semelparity and iteroparity: empirical evidence for a continuum of modes of parity

Hughes, P. W.

10.1101/107268 — evolutionary biology — Posted on 2017-02-10

573 The systematic conservation planning for intraspecific genetic diversity.

Paz-Vinas, I.; Loot, G.; Hermoso, V.; Veyssiere, C.; Poulet, N.; Grenouillet, G.; Blanchet, S.

10.1101/105544 — ecology — Posted on 2017-02-10

574 Myotome adaptability confers developmental robustness to somitic myogenesis in response to fibre number alteration.

Roy, S. D.; Williams, V. C.; Pipalia, T. G.; Hammond, C. L.; Li, K.; Knappe, S.; Knight, R. D.; Hughes, S. M.

10.1101/095554 — developmental biology — Posted on 2017-02-10

575 Sorting of molecular shuttles by designing electrical and mechanical properties of microtubules

Isozaki, N.; Shintaku, H.; Kotera, H.; Hawkins, T. L.; Ross, J. L.; Yokokawa, R.

10.1101/107458 — bioengineering — Posted on 2017-02-10

576 Resistance to malaria through structural variation of red blood cell invasion receptors

Leffler, E. M.; Band, G.; Busby, G. B.; Kivinen, K.; Le, Q. S.; Clarke, G. M.; Bojang, K. A.; Conway, D. J.; Jallow, M.; Sisay-Joof, F.; Bougouma, E. C.; Mangano, V. D.; Modiano, D.; Sirima, S. B.; Achidi, E.; Apinjoh, T. O.; Marsh, K.; Ndila, C. M.; Peshu, N.; Williams, T. N.; Drakeley, C.; Manjurano, A.; Reyburn, H.; Riley, E.; Kachala, D.; Molyneux, M.; Nyirongo, V.; Taylor, T.; Thornton, N.; Tilley, L.; Grimsley, S.; Drury, E.; Stalker, J.; Cornelius, V.; Hubbart, C.; Jeffreys, A. E.; Rowlands, K.; Rockett, K. A.; Spencer, C. C.; Kwiatkowski, D. P.; Malaria Genomic Epidemiology Network,

10.1101/083634 — genomics — Posted on 2017-02-10

577 Topological and Kinetic Determinants of the Modal Matrices of Dynamic Models of Metabolism

Du, B.; Zielinski, D. C.; Palsson, B. O.

10.1101/107425 — systems biology — Posted on 2017-02-09

578 Evidence for time division multiplexing of multiple simultaneous itemsin a sensory coding bottleneck

Caruso, V. C.; Mohl, J. T.; Glynn, C.; Lee, J.; Willett, S. M.; Zaman, A.; Estrada, R.; Tokdar, S.; Groh, J. M.

10.1101/107185 — neuroscience — Posted on 2017-02-09

579 Tex19.1 Restricts LINE-1 Mobilisation in Mouse Embryonic Stem Cells

MacLennan, M.; Garcia-Canadas, M.; Reichmann, J.; Khazina, E.; Salvador-Palomeque, C.; Mann, A.; Peressini, P.; Sanchez, L.; Playfoot, C. J.; Read, D.; Hung, C.-C.; Eskeland, R.; Meehan, R. R.; Weichenrieder, O.; Garcia- Perez, J. L.; Adams, I. R.

10.1101/102442 — genetics — Posted on 2017-02-09

580 Sorting of molecular shuttles by designing electrical and mechanical properties of microtubules

Isozaki, N.; Shintaku, H.; Kotera, H.; Hawkins, T. L.; Ross, J. L.; Yokokawa, R.

10.1101/107458 — bioengineering — Posted on 2017-02-09

581 Strong selection at the level of codon usage bias: evidence against the Li-Bulmer model.

Machado, H. E.; Lawrie, D. S.; Petrov, D. A.

10.1101/106476 — evolutionary biology — Posted on 2017-02-09

582 Using high-throughput barcode sequencing to efficiently map connectomes

Peikon, I. D.; Kebschull, J. M.; Vagin, V. V.; Ravens, D. I.; Sun, Y.-C.; Brouzes, E.; Correa, I. R.; Bressan, D.; Zador, A.

10.1101/099093 — neuroscience — Posted on 2017-02-09

583 Chromosome Number of the Monarch Butterfly, Danaus plexippus (Linnaeus 1758) and the Danainae

Hamm, C. A.

10.1101/107144 — evolutionary biology — Posted on 2017-02-09

584 Bipartite Boolean modelling - a method for mechanistic simulation and validation of large-scale signal transduction networks

Thieme, S.; Romers, J. C.; Muenzner, U.; Krantz, M.

10.1101/107235 — systems biology — Posted on 2017-02-09

585 SBpipe: a collection of pipelines for automating repetitive simulation and analysis tasks

Dalle Pezze, P.; Le Novere, N.

10.1101/107250 — systems biology — Posted on 2017-02-09

586 Investigating circadian rhythmicity in pain sensitivity using a neural circuit model for spinal cord processing of pain

Crodelle, J. A.; Piltz, S. H.; Booth, V.; Hagenauer, M. H.

10.1101/107375 — synthetic biology — Posted on 2017-02-09

587 Computational Analysis of Lifespan Experiment Reproducibility

Petrascheck, M.; Miller, D.

10.1101/107417 — physiology — Posted on 2017-02-09

588 Functional Connectivity Dynamics of the Resting State across the Human Adult Lifespan

Battaglia, D.; Thomas, B.; Hansen, E. C.; Chettouf, S.; Daffertshofer, A.; McIntosh, A. R.; Zimmermann, J.; Ritter, P.; Jirsa, V.

10.1101/107243 — neuroscience — Posted on 2017-02-09

589 Inhibition of DNA2 nuclease as a therapeutic strategy targeting replication stress in cancer cells.

Ira, G.; Kumar, S.; Peng, X.; Daley, J.; Yang, L.; Shen, J.; Nguyen, N.; Bae, G.; Niu, H.; Peng, Y.; Hsieh, H.-J.; Wang, L.; Rao, C.; Stephan, C.; Sung, P.; Peng, G.

10.1101/107383 — molecular biology — Posted on 2017-02-09

590 Pairwise comparisons are problematic when analyzing functional genomic data across species

Dunn, C. W.; Zapata, F.; Munro, C.; Siebert, S.; Hejnol, A.

10.1101/107177 — genomics — Posted on 2017-02-09

591 A machine-learning heuristic to improve gene score prediction of polygenic traitsShort title: Machine-learning boosted gene scores

Pare, G.; Mao, S.; Deng, W. Q.

10.1101/107409 — genetics — Posted on 2017-02-09

592 Analysis of genetic similarity among friends and schoolmates in the National Longitudinal Study of Adolescent to Adult Health (Add Health)

Domingue, B. W.; Belsky, D.; Fletcher, J.; Conley, D.; Boardman, J. D.; Harris, K. M.

10.1101/107045 — genetics — Posted on 2017-02-09

593 Functional Bias and Demographic History Obscure Patterns of Selection among Single-Copy Genes in a Fungal Species Complex

Sanchez-Ramirez, S.; Moncalvo, J.-M.

10.1101/107326 — evolutionary biology — Posted on 2017-02-09

594 Between semelparity and iteroparity: empirical evidence for a continuum of modes of parity

Hughes, P. W.

10.1101/107268 — evolutionary biology — Posted on 2017-02-09

595 PhyD3: a phylogenetic tree viewer with extended phyloXML support for functional genomics data visualization

Kreft, L.; Botzki, A.; Coppens, F.; Vandepoele, K.; Van Bel, M.

10.1101/107276 — bioinformatics — Posted on 2017-02-09

596 On the relationship between indenation hardness and modulus, and the damage resistance of biological materials.

Labonte, D.; Lenz, A.-K.; Oyen, M. L.

10.1101/107284 — bioengineering — Posted on 2017-02-09

597 A simple centrifugation protocol leads to a 55-fold mitochondrial DNA enrichment and paves the way for future mitogenomic research

Macher, J. N.; Zizka, V.; Weigand, A. M.; Leese, F.

10.1101/106583 — molecular biology — Posted on 2017-02-09

598 Chlamydomonas reinhardtii formin and profilin are optimized for acute rapid actin filament assembly

Christensen, J. R.; Glista, M. J.; Mueller, D. M.; Li, Y.; Sees, J. A.; Skau, C. T.; Mets, L. J.; Avasthi, P.; Kovar, D. R.

10.1101/096008 — cell biology — Posted on 2017-02-09

599 Polarity sensitive probes for super resolution STED microscopy

Sezgin, E.; Schneider, F.; Zilles, V.; Garcia, E.; Waithe, D.; Klymchenko, A. S.; Eggeling, C.

10.1101/107334 — biophysics — Posted on 2017-02-09

600 High-throughput annotation of full-length long noncoding RNAs with Capture Long-Read Sequencing (CLS)

Lagarde, J.; Uszczynska-Ratajczak, B.; Carbonell, S.; Davis, C.; Gingeras, T. R.; Frankish, A.; Harrow, J.; Guigo, R.; Johnson, R.

10.1101/105064 — genomics — Posted on 2017-02-09

601 Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica

10.1101/105759 — microbiology — Posted on 2017-02-09

602 Small teams of myosin Vc coordinate their stepping for efficient cargo transport on actin bundles

Krementsova, E. B.; Furuta, K.; Oiwa, K.; Trybus, K. M.; Ali, M. Y.

10.1101/106658 — biophysics — Posted on 2017-02-09

603 Gene ORGANizer: Linking Genes to the Organs They Affect

Gokhman, D.; Kelman, G.; Amartely, A.; Gershon, G.; Tsur, S.; Carmel, L.

10.1101/106948 — bioinformatics — Posted on 2017-02-09

604 OptiClust: Improved method for assigning amplicon-based sequence data to operational taxonomic units

Westcott, S. L.; Schloss, P. D.

10.1101/096537 — microbiology — Posted on 2017-02-09

605 The House Fly Y Chromosome is Young and Minimally Differentiated from its Ancient X Chromosome Partner

Meisel, R.; Gonzales, C. A.; Luu, H.

10.1101/073023 — genomics — Posted on 2017-02-09

606 A metric on phylogenetic tree shapes

Colijn, C.; Plazzotta, G.

10.1101/054544 — evolutionary biology — Posted on 2017-02-09

607 BCFtools/csq: Haplotype-aware variant consequences

Danecek, P.; McCarthy, S. A.

10.1101/090811 — bioinformatics — Posted on 2017-02-09

608 Evolutionary and functional data power search for obsessive-compulsive disorder genes

Noh, H. J.; Tang, R.; Flannick, J.; O Dushlaine, C.; Swofford, R.; Howrigan, D.; Genereux, D. P.; Johnson, J.; van Grootheest, G.; Grunblatt, E.; Andersson, E.; Djurfeldt, D. R.; Patel, P. D.; Koltookian, M.; Hultman, C.; Pato, M. T.; Pato, C. N.; Rasmussen, S. A.; Jenike, M. A.; Hanna, G. L.; Stewart, S. E.; Knowles, J. A.; Ruhrmann, S.; Grabe, H.-J.; Wagner, M.; Ruck, C.; Mathews, C. A.; Walitza, S.; Cath, D. C.; Feng, G.; Karlsson, E. K.; Lindblad-Toh, K.

10.1101/107193 — genomics — Posted on 2017-02-09

609 MEF2C phosphorylation is required for chemotherapy resistance in acute myeloid leukemia

Brown, F.; Still, E.; Cifani, P.; Takao, S.; Reed, C.; Ficarro, S.; Koche, R.; Romanienko, P.; Mark, W.; O'Donnell, C.; Spitzer, B.; Stutzke, C.; Krivtsov, A.; Pouliot, G.; Marto, J.; Armstrong, S.; Kentsis, A.

10.1101/107201 — cancer biology — Posted on 2017-02-09

610 Symmetry broken and rebroken during the ATP hydrolysis cycle of the mitochondrial Hsp90 TRAP1

Elnatan, D.; Betegon, M.; Liu, Y.; Ramelot, T.; Kennedy, M. A.; Agard, D.

10.1101/107094 — molecular biology — Posted on 2017-02-09

611 A target-specific assay for rapid and quantitative detection of Mycobacterium chimaera DNA in environmental and clinical specimens

Zozaya-Valdes, E.; Porter, J. L.; Coventry, J.; Fyfe, J. A. M.; Carter, G. P.; Goncalves da Silva, A.; Seemann, T.; Johnson, P. D. R.; Stewardson, A. J.; Bastian, I.; Roberts, S. A.; Howden, B. P.; Williamson, D. A.; Stinear, T.

10.1101/105213 — microbiology — Posted on 2017-02-09

612 Integrative analysis and refined design of CRISPR knockout screens

Chen, C.-H.; Li, W.; Xiao, T.; Xu, H.; Jiang, P.; Meyer, C. A.; Brown, M.; Liu, X. S.

10.1101/106534 — bioinformatics — Posted on 2017-02-09

613 Refining the role of de novo protein truncating variants in neurodevelopmental disorders using population reference samples

Kosmicki, J.; Samocha, K.; Howrigan, D.; Sanders, S.; Slowikowski, K.; Lek, M.; Karczewski, K.; Cutler, D.; Devlin, B.; Roeder, K.; Buxbaum, J.; Neale, B.; MacArthur, D.; Wall, D.; Robinson, E.; Daly, M.

10.1101/052886 — genetics — Posted on 2017-02-08

614 rxncon 2.0: a language for executable molecular systems biology

Romers, J. C.; Krantz, M.

10.1101/107136 — systems biology — Posted on 2017-02-08

615 The Integrative Role of Frontopolar Cortex in Rule-Based Category Learning

Paniukov, D.; Davis, T.

10.1101/107110 — neuroscience — Posted on 2017-02-08

616 Division of labor, bet hedging, and the evolution of mixed biofilm investment strategies

Lowery, N. V.; McNally, L.; Ratcliff, W. C.; Brown, S. P.

10.1101/107102 — microbiology — Posted on 2017-02-08

617 Oropharyngeal mucosal transmission of Zika virus in rhesus macaques

Newman, C. M.; Dudley, D. M.; Aliota, M. T.; Weiler, A. M.; Barry, G. L.; Mohns, M. S.; Breitbach, M. E.; Stewart, L. M.; Buechler, C. R.; Graham, M. E.; Post, J.; Schultz-Darken, N.; Peterson, E.; Newton, W.; Mohr, E. L.; Capuano, S.; O'Connor, D. H.; Friedrich, T. C.

10.1101/107128 — microbiology — Posted on 2017-02-08

618 Genomic analysis of P elements in natural populations of Drosophila melanogaster

Bergman, C. M.; Nelson, M. G.; Bondarenko, V.; Kozeretska, I.

10.1101/107169 — genomics — Posted on 2017-02-08

619 Chromosome Number of the Monarch Butterfly, Danaus plexippus (Linnaeus 1758) and the Danainae

Hamm, C. A.

10.1101/107144 — evolutionary biology — Posted on 2017-02-08

620 Problems with Estimating Anthesis Phenology Parameters in Zea mays: Consequences for Combining Ecophysiological Models with Genetics

Lamsal, A.; Welch, S.; White, J.; Thorp, K.; Bello, N.

10.1101/087742 — genetics — Posted on 2017-02-08

621 A Multi-Parameter Analysis of Cellular Coordination of Major Transcriptome Regulation Mechanisms

Jiang, W.; Guo, Z.; Lages, N.; Zheng, W. J.; Feliers, D.; Zhang, F.; Wang, D.

10.1101/104901 — systems biology — Posted on 2017-02-08

622 Impact of gray matter signal regression in resting state and language task functional networks

Herrera, L. C. T.; Coan, A.; Marenco, L.; Cesar, C. L.; Castellano, G.

10.1101/094078 — neuroscience — Posted on 2017-02-08

623 Salmonella enterica genomes recovered from victims of a major 16th century epidemic in Mexico

Vagene, A. J.; Campana, M. G.; Robles Garcia, N. M.; Warinner, C.; Spyrou, M. A.; Andrades Valtuena, A.; Huson, D.; Tuross, N.; Herbig, A.; Bos, K. I.; Krause, J.

10.1101/106740 — genomics — Posted on 2017-02-08

624 Recent Regulatory Changes Shaped the Human Facial and Vocal Anatomy

10.1101/106955 — evolutionary biology — Posted on 2017-02-08

625 Incorporating the Rate of Transcriptional Change Improves Construction of Gene Regulatory Networks

Desai, J.; Sartor, R. C.; Lawas, L. M.; Jagadish SV, K.; Doherty, C. J.

10.1101/093807 — bioinformatics — Posted on 2017-02-08

626 Broad-spectrum inhibition of Phytophthora infestans by root endophytes

de Vries, S.; von Dahlen, J. K.; Schnake, A.; Ginschel, S.; Schulz, B.; Rose, L. E.

10.1101/107052 — plant biology — Posted on 2017-02-08

627 Robust and efficient coding with grid cells

Vago, L.; Ujfalussy, B. B.

10.1101/107060 — neuroscience — Posted on 2017-02-08

628 Validation and Implementation of CLIA-Compliant Whole Genome Sequencing (WGS) in Public Health Laboratory

Kozyreva, V. K.; Truong, C.-L.; Greninger, A. L.; Crandall, J.; Mukhopadhyay, R.; Chaturvedi, V.

10.1101/107003 — microbiology — Posted on 2017-02-08

629 FAM83G/PAWS1 controls cytoskeletal dynamics and cell migration through association with the SH3 adaptor CD2AP

Sapkota, G. P.; Cummins, T. D.; Wu, K. Z. L.; Bozatzi, P.; Dingwell, K. S.; Macartney, T. J.; Wood, N. T.; Varghese, J.; Gourlay, R.; Campbell, D. G.; Prescott, A.; Griffis, E.; Smith, J. C.

10.1101/106971 — cell biology — Posted on 2017-02-08

630 Collective effects of common SNPs and improved risk prediction in lung cancer

Lei, X.; Yuan, D.; Zhu, Z.; Huang, S.

10.1101/106864 — cancer biology — Posted on 2017-02-08

631 Genome-wide analysis of differential translation and differential translational buffering using anota2seq

Oertlin, C.; Lorent, J.; Gandin, V.; Murie, C.; Masvidal, L.; Cargnello, M.; Furic, L.; Topisirovic, I.; Larsson, O.

10.1101/106922 — bioinformatics — Posted on 2017-02-08

632 Accumulation of Minor Alleles of Common SNPs in Schizophrenia

He, P.; Lei, X.; Yuan, D.; Zhu, Z.; Huang, S.

10.1101/106815 — pathology — Posted on 2017-02-08

633 Antibacterial nucleoside-analog inhibitor of bacterial RNA polymerase: pseudouridimycin

Maffioli, S.; Zhang, Y.; Degen, D.; Carzaniga, T.; Del Gatto, G.; Serina, S.; Monciardini, P.; Mazzetti, C.; Guglierame, P.; Candiani, G.; Chiriac, A. I.; Facchetti, G.; Kaltofen, P.; Sahl, H.-G.; Deho, G.; Donadio, S.; Ebright, R. H.

10.1101/106906 — molecular biology — Posted on 2017-02-08

634 Taenia solium TAF6 and TAF9 binds to a putative Downstream Promoter Element present in TsTBP1 gene core promoter

Rodriguez Lima, O.; Garcia-Gutierrez, P.; Jimenez, L.; Zarain-Herzberg, A.; Lazarini, R.; Landa, A.

10.1101/106997 — molecular biology — Posted on 2017-02-08

635 Habitat generalists or specialists, insights from comparative genomic analyses of Thermosipho lineages

Haverkamp, T. H. A.; Geslin, C.; Lossouarn, J.; Podosokorskaya, O. A.; Kublanov, I.; Nesbo, C. L.

10.1101/106989 — microbiology — Posted on 2017-02-08

636 High-Throughput Metabolic Network Analysis and Metatranscriptomics of a Cosmopolitan and Streamlined Freshwater Lineage

Hamilton, J. J.; Garcia, S. L.; Brown, B. S.; Oyserman, B. O.; Moya-Flores, F.; Bertilsson, S.; Malmstrom, R. R.; Forest, K. T.; McMahon, K. D.

10.1101/106856 — microbiology — Posted on 2017-02-08

637 Quantitative characterization of CTLA4 trafficking and turnover using a combined in vitro and in silico approach

Khailaie, S.; Rowshanravan, B.; Robert, P. A.; Walker, L. S. K.; Sansom, D. M.; Meyer-Hermann, M.

10.1101/106898 — immunology — Posted on 2017-02-08

638 The house spider genome reveals an ancient whole-genome duplication during arachnid evolution

Schwager, E. E.; Sharma, P. P.; Clarke, T.; Leite, D. J.; Wierschin, T.; Pechmann, M.; Akiyama-Oda, Y.; Esposito, L.; Bechsgaard, J.; Bilde, T.; Buffry, A. D.; Chao, H.; Dinh, H.; Doddapaneni, H.; Dugan, S.; Eibner, C.; Extavour, C. G.; Funch, P.; Garb, J.; Gonzalez, V. L.; Griffiths-Jones, S.; Han, Y.; Hayashi, C.; Hilbrant, M.; Hughes, D. S. T.; Janssen, R.; Lee, S. L.; Maeso, I.; Murali, S. C.; Muzny, D. M.; Nunes da Fonseca, R.; Qu, J.; Ronshaugen, M.; Schomburg, C.; Schoenauer, A.; Stollewerk, A.; Torres-Oliva, M.; Turetzek, N.; Vanthournout, B.; Werren, J.; Wolff, C.; Worley, K. C.; Buch

10.1101/106385 — genomics — Posted on 2017-02-08

639 Genome-wide identification of lineage and locus specific variation associated with pneumococcal carriage duration

Lees, J. A.; Croucher, N. J.; Goldblatt, D.; Nosten, F.; Parkhill, J.; Turner, C.; Turner, P.; Bentley, S. D.

10.1101/107086 — genomics — Posted on 2017-02-08

640 Salmonella enterica genomes recovered from victims of a major 16th century epidemic in Mexico

Vagene, A. J.; Campana, M. G.; Robles Garcia, N. M.; Warinner, C.; Spyrou, M. A.; Andrades Valtuena, A.; Huson, D.; Tuross, N.; Herbig, A.; Bos, K. I.; Krause, J.

10.1101/106740 — genomics — Posted on 2017-02-08

641 CpG methylation accounts for genome-wide C>T mutation variation and cancer driver formation across cancer types

Poulos, R. C.; Olivier, J.; Wong, J. W. H.

10.1101/106872 — genomics — Posted on 2017-02-08

642 Cigarette smoking increases coffee consumption: findings from a Mendelian randomisation analysis

Bjorngaard, J.; Nordestgaard, A.; Taylor, A.; Treur, J.; Gabrielsen, M.; Munafo, M. R.; Nordestgaard, B.; Asvold, B.; Romundstad, P.; Davey Smith, G.

10.1101/107037 — genetics — Posted on 2017-02-08

643 An efficient FLP-based toolkit for spatiotemporal control of gene expression in Caenorhabditis elegans

Munoz-Jimenez, C. M.; Ayuso, C.; Dobrzynska, A.; Torres, A.; Cruz-Ruiz, P. d. l.; Askjaer, P.

10.1101/107029 — genetics — Posted on 2017-02-08

644 What shapes the continuum of reproductive isolation? Lessons from Heliconius butterflies.

Merot, C.; Salazar, C.; Merrill, R. M.; Jiggins, C. D.; Joron, M.

10.1101/107011 — evolutionary biology — Posted on 2017-02-08

645 Recent Regulatory Changes Shaped the Human Facial and Vocal Anatomy

10.1101/106955 — evolutionary biology — Posted on 2017-02-08

646 Re-evaluating inheritance in genome evolution: widespread transfer of LINEs between species

Ivancevic, A.; Kortschak, D.; Bertozzi, T.; Adelson, D.

10.1101/106914 — evolutionary biology — Posted on 2017-02-08

647 A nanobody-based toolset to investigate the role of protein localization and dispersal in Drosophila

Harmansa, S.; Alborelli, I.; Caussinus, E.; Affolter, M.

10.1101/106930 — developmental biology — Posted on 2017-02-08

648 Small teams of myosin Vc coordinate their stepping for efficient cargo transport on actin bundles

Krementsova, E. B.; Furuta, K.; Oiwa, K.; Trybus, K. M.; Ali, M. Y.

10.1101/106658 — biophysics — Posted on 2017-02-08

649 Gene ORGANizer: Linking Genes to the Organs They Affect

Gokhman, D.; Kelman, G.; Amartely, A.; Gershon, G.; Tsur, S.; Carmel, L.

10.1101/106948 — bioinformatics — Posted on 2017-02-08

650 A simple centrifugation protocol leads to a 55-fold mitochondrial DNA enrichment and paves the way for future mitogenomic research

Macher, J. N.; Zizka, V.; Weigand, A. M.; Leese, F.

10.1101/106583 — molecular biology — Posted on 2017-02-08

651 Watching the clock for 25 years in FlyClockbase: Variability in circadian clocks of Drosophila melanogaster as uncovered by biological model curation

Scheuer, K. S.; Hanlon, B.; Dresel, J. W.; Nolan, E. D.; Davis, J. C.; Loewe, L.

10.1101/099192 — genetics — Posted on 2017-02-08

652 Quantifying climate change impacts emphasises the importance of managing regional threats in the endangered Yellow-eyed penguin

Mattern, T.; Meyer, S.; Ellenberg, U.; Houston, D. M.; Darby, J. T.; Young, M. J.; van Heezik, Y.; Seddon, P. J.

10.1101/066696 — zoology — Posted on 2017-02-08

653 Morphological plant modeling: Unleashing geometric and topological potential within the plant sciences

Bucksch, A.; Atta-Boateng, A.; Azihou, A. F.; Balduzzi, M.; Battogtokh, D.; Baumgartner, A.; Binder, B.; Braybrook, S.; Chang, C.; Coneva, V.; DeWitt, T.; Fletcher, A.; Gehan, M.; Hernan Diaz Martinez, D.; Hong, L.; Iyer-Pascuzzi, A.; Klein, L.; Leiboff, S.; Li, M.; Lynch, J.; Maizel, A.; Maloof, J.; Markelz, R. C.; Martinez, C.; Miller, L.; Mio, W.; Palubicki, W.; Poorter, H.; Pradal, C.; Price, C.; Puttonen, E.; Reese, J.; Rellan-Alvarez, R.; Spalding, E.; Sparks, E.; Topp, C.; Williams, J.; Chitwood, D.

10.1101/078832 — plant biology — Posted on 2017-02-08

654 Structural covariance networks across the lifespan, from 6-94 years of age

DuPre, E.; Spreng, R. N.

10.1101/090233 — neuroscience — Posted on 2017-02-08

655 Reduced protein expression in a virus attenuated by codon deoptimization

Jack, B. R.; Boutz, D. R.; Paff, M. L.; Smith, B. L.; Bull, J. J.; Wilke, C. O.

10.1101/106799 — systems biology — Posted on 2017-02-07

656 How much research is spurred when a gene is associated with a complex disease?

Struck, T. J.; Mannakee, B. K.; Gutenkunst, R.

10.1101/106773 — genetics — Posted on 2017-02-07

657 The depletion of MARVELD1 leads to placenta accreta via integrin β4-dependent trophoblast cell invasion

Chen, Y.; Zhang, H.; Han, F.; Yue, L.; Qiao, C.; Zhang, Y.; Dou, P.; Liu, W.; Li, Y.

10.1101/106807 — developmental biology — Posted on 2017-02-07

658 MEACA: efficient gene-set interpretation of expression data using mixed models

Jiang, D.; Zhuo, B.

10.1101/106781 — bioinformatics — Posted on 2017-02-07

659 Age-based partitioning of individual genomic inbreeding using an exponential mixture model

Druet, T.; Gautier, M.

10.1101/106765 — genetics — Posted on 2017-02-07

660 Quantitative analysis of population-scale family trees using millions of relatives

Kaplanis, J.; Gordon, A.; Wahl, M.; Gershovits, M.; Markus, B.; Sheikh, M.; Gymrek, M.; Bhatia, G.; MacArthur, D. G.; Price, A.; Erlich, Y.

10.1101/106427 — genomics — Posted on 2017-02-07

661 A simple centrifugation protocol leads to a 55-fold mitochondrial DNA enrichment and paves the way for future mitogenomic research

Macher, J. N.; Zizka, V.; Weigand, A. M.; Leese, F.

10.1101/106583 — molecular biology — Posted on 2017-02-07

662 Disease implications of animal social organization and network structure - a quantitative analysis

Sah, P.; Mendez, J. D.; Bansal, S.

10.1101/106633 — epidemiology — Posted on 2017-02-07

663 Measuring changes in transmission of neglected tropical diseases, malaria, and enteric pathogens from quantitative antibody levels

Arnold, B.; van der Laan, M. J.; Hubbard, A. E.; Steel, C.; Kubofcik, J.; Hamlin, K. L.; Moss, D. M.; Nutman, T. B.; Priest, J. W.; Lammie, P. J.

10.1101/106708 — epidemiology — Posted on 2017-02-07

664 Active diffusion and advection in the Drosophila ooplasm result from the interplay of the actin and microtubule cytoskeletons

Drechsler, M.; Giavazzi, F.; Cerbino, R.; Palacios, I. M.

10.1101/098590 — biophysics — Posted on 2017-02-07

665 Neotrygon vali (Myliobatoidei: Dasyatidae), a new blue-spotted maskray from the Solomon archipelago described from its DNA barcode

Borsa, P.

10.1101/106682 — zoology — Posted on 2017-02-07

666 COBRAme: A Computational Framework for Building and Manipulating Models of Metabolism and Gene Expression

Lloyd, C. J.; Ebrahim, A.; Yang, L.; King, Z. A.; Catoiu, E.; O'Brien, E. J.; Liu, J. K.; Palsson, B. O.

10.1101/106559 — systems biology — Posted on 2017-02-07

667 A simple centrifugation protocol leads to a 55-fold mitochondrial DNA enrichment and paves the way for future mitogenomic research

Macher, J. N.; Zizka, V.; Weigand, A. M.; Leese, F.

10.1101/106583 — molecular biology — Posted on 2017-02-07

668 Strong purifying selection on codon usage bias

Machado, H. E.; Lawrie, D. S.; Petrov, D. A.

10.1101/106476 — evolutionary biology — Posted on 2017-02-07

669 Hitchhiking and epistasis give rise to cohort dynamics in adapting populations

Buskirk, S. W.; Peace, R. E.; Lang, G. I.

10.1101/106732 — evolutionary biology — Posted on 2017-02-07

670 Engineered shell proteins confer improved encapsulated pathway behavior in a bacterial microcompartment

Slininger Lee, M. F.; Jakobson, C. M.; Tullman-Ercek, D.

10.1101/106716 — synthetic biology — Posted on 2017-02-07

671 Synaptic input sequence discrimination on behavioral time-scales mediated by reaction-diffusion chemistry in dendrites

Bhalla, U. S.

10.1101/106567 — neuroscience — Posted on 2017-02-07

672 Neural Encoding of Auditory Features during Music Perception and Imagery: Insight into the Brain of a Piano Player

Martin, S.; Mikutta, C.; Leonard, M. K.; Hungate, D.; Koelsch, S.; Chang, E. F.; Millan, J. d. R.; Knight, R. T.; Pasley, B. N.

10.1101/106617 — neuroscience — Posted on 2017-02-07

673 A probabilistic approach to discovering dynamic full-brain functional connectivity patterns

Manning, J.; Zhu, X.; Willke, T.; Ranganath, R.; Stachenfeld, K.; Hasson, U.; Blei, D. M.; Norman, K. A.

10.1101/106690 — neuroscience — Posted on 2017-02-07

674 BRAPH: A Graph Theory Software for the Analysis of Brain Connectivity

Mijalkov, M.; Kakaei, E.; Pereira, J. B.; Westman, E.; Volpe, G.

10.1101/106625 — neuroscience — Posted on 2017-02-07

675 RNPP-type quorum sensing regulates solvent formation and sporulation in Clostridium acetobutylicum

Kotte, A.-K.; Severn, O.; Bean, Z.; Schwarz, K.; Minton, N. P.; Winzer, K.

10.1101/106666 — microbiology — Posted on 2017-02-07

676 High rates of human faecal carriage of mcr-1-positive multi-drug resistant isolates emerge in China in association with successful plasmid families

Zhong, L.-L.; Phan, H. T.; Huang, X.; Vihta, K.-D.; Sheppard, A. E.; Zheng, K.-J.; Li, H.-Y.; Zhang, X.-F.; Patil, S.; Zhang, Y.-F.; Shen, C.; Crook, D. W.; Walker, A. S.; Xing, Y.; Chen, Q.-y.; Lin, J.-l.; Feng, L.-Q.; Doi, Y.; Stoesser, N.; Tian, G.-B.

10.1101/106575 — microbiology — Posted on 2017-02-07

677 Determining the impact of putative loss-of-function variants in protein-coding genes

Balasubramanian, S.; Fu, Y.; Pawashe, M.; McGillivray, P.; Jin, M.; Liu, J.; Karczewski, K. J.; MacArthur, D. G.; Gerstein, M.

10.1101/106468 — genomics — Posted on 2017-02-07

678 Quantitative analysis of population-scale family trees using millions of relatives

Kaplanis, J.; Gordon, A.; Wahl, M.; Gershovits, M.; Markus, B.; Sheikh, M.; Gymrek, M.; Bhatia, G.; MarArthur, D. G.; Price, A.; Erlich, Y.

10.1101/106427 — genomics — Posted on 2017-02-07

679 Tex19.1 Regulates Acetylated SMC3 Cohesin and Prevents Aneuploidy in Mouse Oocytes

Reichmann, J.; Dobie, K.; Lister, L. M.; Best, D.; Crichton, J. H.; MacLennan, M.; Read, D.; Raymond, E. S.; Hung, C.-C.; Boyle, S.; Shirahige, K.; Cooke, H. J.; Bickmore, W. A.; Herbert, M.; Adams, I. R.

10.1101/102285 — genetics — Posted on 2017-02-07

680 Resistance genes in global crop breeding networks

Garrett, K.; Andersen, K.; Bowden, R.; Forbes, G.; Kulakow, P.; Zhou, B.

10.1101/106484 — genetics — Posted on 2017-02-07

681 Composite Likelihood Method for Inferring Local Pedigrees

Ko, A.; Nielsen, R.

10.1101/106492 — genetics — Posted on 2017-02-07

682 Genetic basis of melanin pigmentation in butterfly wings

Zhang, L.; Martin, A.; Perry, M. W.; van der Burg, K. R. L.; Matsuoka, Y.; Monteiro, A.; Reed, R. D.

10.1101/102632 — genetics — Posted on 2017-02-07

683 Multiple factors influence population sex ratios in the Mojave Desert moss Syntrichia caninervis

Baughman, J. T.; Payton, A. C.; Paasch, A. E.; Fisher, K. M.; McDaniel, S. F.

10.1101/075861 — evolutionary biology — Posted on 2017-02-07

684 Density-dependent selection in evolutionary genetics: a lottery model of Grime’s triangle

Bertram, J.; Masel, J.

10.1101/102087 — evolutionary biology — Posted on 2017-02-07

685 Approximate Bayesian Computation Algorithms for Estimating Network Model Parameters

Zheng, Y.; Aris-Brosou, S.

10.1101/106450 — evolutionary biology — Posted on 2017-02-07

686 Evolution of the α2-adrenoreceptors in vertebrates: ADRA2D is absent in mammals and crocodiles

Cespedes, H. A.; Zavala, K.; Opazo, J.

10.1101/106526 — evolutionary biology — Posted on 2017-02-07

687 Disproportional distribution of radioactive elements in the marine ecosystems surrounding the accident site of the Fukushima Daiichi Nuclear Power Plant

Moriya, S.; Otsu, H.; Kihara, K.; Kato, Y.; Itouga, M.; Sakata, K.; Kikuchi, J.; Yamakawa, H.; Suga, J.

10.1101/106211 — ecology — Posted on 2017-02-07

688 Deconvolution of membrane currents for low-crosstalk high-resolution membrane capacitance measurements

Hotka, M.; Zahradnik, I.

10.1101/106641 — biophysics — Posted on 2017-02-07

689 The Rosetta all-atom energy function for macromolecular modeling and design

Alford, R. F.; Leaver-Fay, A.; Jeliazkov, J. R.; O'Meara, M. J.; DiMaio, F. P.; Park, H.; Shapovalov, M. V.; Renfrew, P. D.; Mulligan, V. K.; Kappel, K.; Labonte, J. W.; Pacella, M. S.; Bonneau, R.; Bradley, P.; Dunbrack, R. L.; Das, R.; Baker, D.; Kuhlman, B.; Kortemme, T.; Gray, J. J.

10.1101/106054 — biophysics — Posted on 2017-02-07

690 Free energy calculations suggest a mechanism for Na+/K+-ATPase ion selectivity

Razavi, A. M.; Delemotte, L.; Berlin, J. R.; Carnevale, V.; Voelz, V. A.

10.1101/106724 — biophysics — Posted on 2017-02-07

691 Phenotype and gene ontology enrichment as guides for disease modeling in C. elegans

Angeles-Albores, D.; Lee, R. Y.; Chan, J.; Sternberg, P. W.

10.1101/106369 — bioinformatics — Posted on 2017-02-07

692 Optimal Response Vigor and Choice Under Non-stationary Outcome Values

Dezfouli, A.; Balleine, B. W.; Nock, R.

10.1101/106500 — animal behavior and cognition — Posted on 2017-02-07

693 Translational contributions to tissue-specificity in rhythmic and constitutive gene expression.

Castelo-Szekely, V.; Arpat, A. B.; Janich, P.; Gatfield, D.

10.1101/060368 — genomics — Posted on 2017-02-07

694 Neural correlate of relief in the anterior cingulate cortex and ventral tegmental area

Elston, T. W.; Bilkey, D. K.

10.1101/102178 — neuroscience — Posted on 2017-02-07

695 Cerebellar volume in autism: Meta-analysis and analysis of the ABIDE cohort

Traut, N.; Beggiato, A.; Bourgeron, T.; Delorme, R.; Rondi-Reig, L.; Paradis, A.-L.; Toro, R.

10.1101/104984 — neuroscience — Posted on 2017-02-07

696 Spiraling complexity: a test of the snowball effect in a computational model of RNA folding

Kalirad, A.; Azevedo, R. B. R.

10.1101/076232 — evolutionary biology — Posted on 2017-02-07

697 Real-time changepoint detection for noisy biological time series

Gold, N.; Frasch, M. G.; Herry, C.; Richardson, B. S.; Seely, A. J. E.; Wang, X.

10.1101/106088 — bioinformatics — Posted on 2017-02-07

698 In culture cross-linking of bacterial cells reveals proteome scale dynamic protein-protein interactions at the peptide level

de Jong, L.; de Koning, E. A.; Roseboom, W.; Buncherd, H.; Wanner, M. J.; Jansen, P. J.; Dapic, I.; van Maarseveen, J. H.; Corthals, G. L.; Lewis, P. J.; Hamoen, L. W.; de Koster, C. G.

10.1101/094961 — biochemistry — Posted on 2017-02-07

699 Visibility graphs for fMRI data: multiplex temporal graphs and their modulations across resting state networks

Sannino, S.; stramaglia, s.; Lacasa, L.; Marinazzo, D.

10.1101/106443 — neuroscience — Posted on 2017-02-06

700 Working memory and decision making in a fronto-parietal circuit model

Murray, J. D.; Jaramillo, J. H.; Wang, X.-J.

10.1101/104802 — neuroscience — Posted on 2017-02-06

701 Education and coronary heart disease: a Mendelian randomization study

Tillmann, T.; Vaucher, J.; Okbay, A.; Pikhart, H.; Peasey, A.; Kubinova, R.; Pajak, A.; Tamosiunas, A.; Malyutina, S.; Fischer, K.; Veronesi, G.; Palmer, T.; Bowden, J.; Davey Smith, G.; Bobak, M.; Holmes, M. V.

10.1101/106237 — epidemiology — Posted on 2017-02-06

702 Daisyfield gene drive systems harness repeated genomic elements as a generational clock to limit spread

Min, J.; Noble, C.; Najjar, D.; Esvelt, K. M.

10.1101/104877 — synthetic biology — Posted on 2017-02-06

703 The Bayesian-Laplacian Brain

Zeki, S.; Chen, O. Y.

10.1101/094516 — neuroscience — Posted on 2017-02-06

704 Reward and punishment enhance motor adaptation in stroke

Quattrocchi, G.; Greenwood, R.; Rothwell, J. C.; Galea, J. M.; Bestmann, S.

10.1101/106377 — neuroscience — Posted on 2017-02-06

705 WheatNet: A genome-scale functional network for hexaploid bread wheat, Triticum aestivum

Lee, T.; Hwang, S.; Kim, C. Y.; Shim, H.; Kim, H.; Ronald, P.; Marcotte, E.; Lee, I.

10.1101/105098 — genetics — Posted on 2017-02-06

706 The improbable journeys of epiphytic plants across the Andes: Historical biogeography of Cycnoches (Catasetinae, Orchidaceae)

Perez-Escobar, O. A.; Gottschling, M.; Chomicki, G.; Condamine, F. L.; Klitgaard, B.; Pansarin, E.; Gerlach, G.

10.1101/106393 — evolutionary biology — Posted on 2017-02-06

707 aBayesQR: A Bayesian method for reconstruction of viral populations characterized by low diversity

Ahn, S.; Vikalo, H.

10.1101/103630 — bioinformatics — Posted on 2017-02-06

708 Promoter and transcription factor dynamics tune protein mean and noise strength in a quorum sensing-based feedback synthetic circuit

Boada, Y.; Vignoni, A.; Pico, J.

10.1101/106229 — synthetic biology — Posted on 2017-02-06

709 Very Early Responses to Colour Stimuli Detected in Prestriate Visual Cortex by Magnetoencephalography (MEG)

Shigihara, Y.; Hoshi, H.; Zeki, S.

10.1101/106047 — neuroscience — Posted on 2017-02-06

710 Clusterization in head and neck squamous carcinomas based on lncRNA expression: molecular and clinical correlates

Gonzalez de Lena, P.; Paz-Gallardo, A.; Paramio, J. M.; Garcia-Escudero, R.

10.1101/105999 — genomics — Posted on 2017-02-06

711 Whole genome linkage analysis in a large Brazilian multigenerational family reveals distinct linkage signals for Bipolar Disorder and Depression.

Diniz, M. J. A.; Rodrigues, A. C. S.; Gadelha, A.; Alsabban, S.; Guindalini, C.; Paya-Cano, J.; de Jong, S.; McGuffin, P.; Bressan, R. A.; Breen, G.

10.1101/106260 — genetics — Posted on 2017-02-06

712 Bayesian molecular dating as a "doubly intractable" problem

Guindon, S.

10.1101/106310 — evolutionary biology — Posted on 2017-02-06

713 Recent origin of Neotropical orchids in the world’s richest plant biodiversity hotspot

Perez-Escobar, O. A.; Chomicki, G.; Condamine, F. L.; Karremans, A. P.; Bogarin, D.; Matzke, N.; Silvestro, D.; Antonelli, A.

10.1101/106302 — evolutionary biology — Posted on 2017-02-06

714 Iroki: automatic customization for phylogenetic trees

Moore, R. M.; Harrison, A. O.; McAllister, S. M.; Marine, R.; Chan, C.; Wommack, K. E.

10.1101/106138 — bioinformatics — Posted on 2017-02-06

715 Linking circadian time to growth rate quantitatively via carbon metabolism

Chew, Y. H.; Seaton, D. D.; Mengin, V.; Flis, A.; Mugford, S. T.; Smith, A. M.; Stitt, M.; Millar, A. J.

10.1101/105437 — systems biology — Posted on 2017-02-06

716 The GridCAT: A toolbox for automated analysis of human grid cell codes in fMRI

Stangl, M.; Shine, J.; Wolbers, T.

10.1101/106096 — neuroscience — Posted on 2017-02-06

717 Histone H3 threonine 11 phosphorylation is catalyzed directly by the meiosis-specific kinase Mek1 and provides a molecular readout of Mek1 activity in vivo

Kniewel, R.; Murakami, H.; Liu, Y.; Hollingsworth, N. M.; Keeney, S.

10.1101/106245 — molecular biology — Posted on 2017-02-06

718 Genomic analysis of family data reveals additional genetic effects on intelligence and personality

Hill, W. D.; Arslan, R. C.; Xia, C.; Luciano, M.; Amador, C.; Navarro, P.; Hayward, C.; Nagy, R.; Porteous, D.; McIntosh, A. M.; Deary, I. J.; Haley, C. S.; Penke, L.

10.1101/106203 — genetics — Posted on 2017-02-06

719 A pooled sequencing approach identifies a candidate meiotic driver in Drosophila

Wei, K.; Reddy, H.; Rathnam, C.; Lee, J.; Lin, D.; Ji, S.; Mason, J. M.; Clark, A. G.; Barbash, D. A.

10.1101/106336 — genetics — Posted on 2017-02-06

720 Evaluating Bayesian spatial methods for modelling species distributions with clumped and restricted occurrence data

Redding, D. W.; Lucas, T.; Blackburn, T.; Jones, K. E.

10.1101/105742 — ecology — Posted on 2017-02-06

721 Refractive index as an intrinsic imaging contrast for 3-D label-free live cell imaging

Kim, D.; Lee, S.; Lee, M.; Oh, J.; Yang, S.-A.; Park, Y.

10.1101/106328 — cell biology — Posted on 2017-02-06

722 Prediction of Molecular Mechanisms of Breast Cancer Metastasis

Siwo, G. H.; Stolovitzky, G. A.; Assefa, S.

10.1101/106179 — cancer biology — Posted on 2017-02-06

723 Morphologically Constrained and Data Informed Cell Segmentation of Budding Yeast

Bakker, E.; Swain, P. S.; Crane, M.

10.1101/105106 — bioinformatics — Posted on 2017-02-06

724 Data-driven identification of potential Zika virus vectors

Evans, M.; Dallas, T. A.; Han, B. A.; Murdock, C. C.; Drake, J. M.

10.1101/077966 — bioinformatics — Posted on 2017-02-06

725 Non Hybrid Long Read Consensus Using Local De Bruijn Graph Assembly

Tischler, G.; Myers, E. W.

10.1101/106252 — bioinformatics — Posted on 2017-02-06

726 Unsupervised idealization of ion channel recordings by Minimum Description Length: Application to human PIEZO1-channels

Gnanasambandam, R.; Nielsen, M. S.; Nicolai, C.; Sachs, F.; Hofgaard, J. P.; Dreyer, J.

10.1101/106187 — bioinformatics — Posted on 2017-02-06

727 Advanced Protection Against Marine Biofouling Using Solar Light

Scandura, G.; Ciriminna, R.; Ozer, L. Y.; Meneguzzo, F.; Palmisano, G.; Pagliaro, M.

10.1101/106195 — bioengineering — Posted on 2017-02-06

728 Mapping the unknown: The spatially correlated multi-armed bandit

Wu, C. M.; Schulz, E.; Speekenbrink, M.; Nelson, J. D.; Meder, B.

10.1101/106286 — animal behavior and cognition — Posted on 2017-02-06

729 Inferring hidden causal relations between pathway members using reduced Google matrix of directed biological networks

Lages, J.; Shepelyansky, D.; Zinovyev, A.

10.1101/096362 — systems biology — Posted on 2017-02-06

730 A potential mechanism for the first-person inner sensation of memory provides evidence for a relationship between learning and LTP induction

Vadakkan, K. I.

10.1101/085589 — neuroscience — Posted on 2017-02-06

731 AmoA-targeted polymerase chain reaction primers for the specific detection and quantification of comammox Nitrospira in the environment

Pjevac, P.; Schauberger, C.; Poghosyan, L.; Herbold, C. W.; van Kessel, M. A.; Daebeler, A.; Steinberger, M.; Jetten, M. S.; Lucker, S.; Wagner, M.; Daims, H.

10.1101/096891 — microbiology — Posted on 2017-02-06

732 Applying polygenic risk scoring for psychiatric disorders within a family context

de Jong, S.; Abdalla Diniz, M. J.; Saloma Rodrigues, A. C.; Gadelha, A.; Santoro, M. L.; Ota, V. K.; Noto, C.; MDD & BIP groups of Psychiatric Genomics Consortiu, ; Curtis, C.; Patel, H.; Hall, L. S.; O'Reilly, P. F.; Belangero, S. I.; Bressan, R.; Breen, G.

10.1101/103713 — genetics — Posted on 2017-02-06

733 Network analysis of the hominin origin of Herpes Simplex virus 2 from fossil data

Underdown, S.; Kumar, K.; Houldcroft, C.

10.1101/105007 — evolutionary biology — Posted on 2017-02-06

734 Preprint: Environmentally-Friendly Workflow Based on Supercritical Fluid Chromatography and Tandem Mass Spectrometry Molecular Networking For the Discovery of Potent Anti-Viral Leads From Plants

Nothias, L.-F.; Boutet-Mercey, S.; Cachet, X.; De La Torre, E.; Laboureur, L.; Gallard, J.-F.; Retailleau, P.; Brunelle, A.; Dorrestein, P. C.; Costa, J.; Bedoya, L. M.; Roussi, F.; Leyssen, P.; Alcami, J.; Paolini, J.; Litaudon, M.; Touboul, D.

10.1101/106153 — pharmacology and toxicology — Posted on 2017-02-05

735 Hallmarks of early sex-chromosome evolution in the dioecious plant Mercurialis annua revealed by de novo genome assembly, genetic mapping and transcriptome analysis

Ridout, K. E.; Veltsos, P.; Muyle, A.; Emery, O.; Rastas, P.; Marais, G. A.; Filatov, D. A.; Pannell, J. R.

10.1101/106120 — genomics — Posted on 2017-02-05

736 Heterogeneity in polygenic scores for common human traits

Ware, E. B.; Schmitz, L. L.; Faul, J. D.; Gard, A.; Mitchell, C.; Smith, J. A.; Zhao, W.; Weir, D.; Kardia, S. L.

10.1101/106062 — genetics — Posted on 2017-02-05

737 Real-time changepoint detection for noisy biological time series

Gold, N.; Frasch, ; Herry, C.; Richardson, B. S.; Seely, A. J. E.; Wang, X.

10.1101/106088 — bioinformatics — Posted on 2017-02-05

738 Spatial tuning shifts increase the discriminability and fidelity of population codes in visual cortex

Vo, V. A.; Sprague, T.; Serences, J.

10.1101/086892 — neuroscience — Posted on 2017-02-05

739 An inducible CRISPR-ON system for controllable gene activation in human pluripotent stem cells

Guo, J.; Ma, D.; Huang, R.; Ming, J.; Ye, M.; Kee, K.; Xie, Z.; Na, J.

10.1101/106112 — cell biology — Posted on 2017-02-05

740 Quantitative Analysis of Dopamine Neuron Subtypes Generated from Mouse Embryonic Stem Cells

Dingle, Y.-T. L.; Xiong, K.; Machan, J. T.; Seymour, K. A.; Ellisor, D.; Hoffman-Kim, D.; Zervas, M.

10.1101/093419 — neuroscience — Posted on 2017-02-05

741 Multiple roles of PIWIL1 in mouse neocorticogenesis

Viljetic, B.; Diao, L.; Liu, J.; Krsnik, Z.; Wijeratne, S. H. R.; Kristopovich, R.; Dutre-Clarke, M.; Kraushar, M. L.; Song, J.; Xing, J.; Chen, K.; Rasin, M.-R.

10.1101/106070 — neuroscience — Posted on 2017-02-05

742 Multiple factors influence population sex ratios in the Mojave Desert moss Syntrichia caninervis

Baughman, J. T.; Payton, A. C.; Paasch, A. E.; Fisher, K. M.; McDaniel, S. F.

10.1101/075861 — evolutionary biology — Posted on 2017-02-05

743 Partial duplication of the CRYBB1-CRYBA4 locus is associated with autosomal dominant congenital cataract

Siggs, O. M.; Javadiyan, S.; Sharma, S.; Souzeau, E.; Lower, K. M.; Taranath, D. A.; Black, J.; Pater, J.; Willoughby, J. G.; Burdon, K. P.; Craig, J. E.

10.1101/042515 — genetics — Posted on 2017-02-05

744 Optimization of lag phase shapes the evolution of a bacterial enzyme

Adkar, B. V.; Manhart, M.; Bhattacharyya, S.; Tian, J.; Musharbash, M.; Shakhnovich, E. I.

10.1101/088013 — evolutionary biology — Posted on 2017-02-05

745 Logistic proliferation of cells in scratch assays is delayed

Jin, W.; Shah, E. T.; Penington, C. J.; McCue, S. W.; Maini, P. K.; Simpson, M. J.

10.1101/077388 — biophysics — Posted on 2017-02-05

746 Widespread patterns of sexually dimorphic gene expression in an avian hypothalamic-pituitary-gonadal (HPG) axis

MacManes, M.; Austin, S.; Lang, A.; Booth, A.; Farrar, V.; Calisi, R. M.

10.1101/085365 — neuroscience — Posted on 2017-02-04

747 Astral microtubule dynamics regulate anaphase oscillation onset and set a robust final position of the C. elegans zygote spindle.

Bouvrais, H.; Chesneau, L.; Pastezeur, S.; Delattre, M.; Pecreaux, J.

10.1101/103937 — biophysics — Posted on 2017-02-04

748 Nutrition Outweighs Defense: Myzus persicae (Green Peach Aphid) Prefers and Performs Better on Young Leaves of Cabbage

Cao, H.-H.; Zhang, Z.-F.; Wang, X.-F.; Liu, T.-X.

10.1101/085159 — ecology — Posted on 2017-02-04

749 Mindfulness and dynamic functional neural connectivity in children and adolescents

Marusak, H. A.; Thomason, M. E.; Elrahal, F.; Peters, C. A.; Kundu, P.; Lombardo, M. V.; Calhoun, V. D.; Goldberg, E. K.; Cohen, C.; Taub, J. W.; Rabinak, C. A.

10.1101/106021 — neuroscience — Posted on 2017-02-04

750 How activity dependent feedback inhibition may maintain head direction signals in mouse presubiculum

Simonnet, J.; Nassar, M.; Stella, F.; Cohen, I.; Mathon, B.; Boccara, C. N.; Miles, R.; Fricker, D.

10.1101/106005 — neuroscience — Posted on 2017-02-04

751 A performance assessment of relatedness inference methods using genome-wide data from thousands of relatives

Ramstetter, M.; Dyer, T. D.; Lehman, D. M.; Curran, J. E.; Duggirala, R.; Blangero, J.; Mezey, J. G.; Williams, A. L.

10.1101/106013 — genetics — Posted on 2017-02-04

752 Genetic analysis reveals efficient sexual spore dispersal at a fine spatial scale in Armillaria ostoyae, the causal agent of root-rot disease in conifers

Dutech, C.; Labbe, F.; Capedevielle, X.; Lung, B.

10.1101/105825 — evolutionary biology — Posted on 2017-02-04

753 Genome-Wide Association Analysis Identifies Genetic Correlates of Immune Infiltrates in Solid Tumors.

Siemers, N.; Holloway, J. L.; Chang, H.; Chasalow, S. D.; Ross-MacDonald, P. B.; Voliva, C. F.; Szustakowski, J. D.

10.1101/106039 — cancer biology — Posted on 2017-02-04

754 Structure of a AAA+ unfoldase in the process of unfolding substrate

Ripstein, Z. A.; Huang, R.; Augustyniak, R.; Kay, L. E.; Rubinstein, J. L.

10.1101/105866 — biochemistry — Posted on 2017-02-04

755 The Potential Role of Genetic Assimilation during Maize Domestication

Lorant, A.; Perdersen, S.; Holst, I.; Hufford, M. B.; Winter, K.; Piperno, D.; Ross-Ibarra, J.

10.1101/105940 — genomics — Posted on 2017-02-03

756 Maximum Entropy Methods for Extracting the Learned Features of Deep Neural Networks

Finnegan, A. I.; Song, J. S.

10.1101/105957 — bioinformatics — Posted on 2017-02-03

757 The mammalian kinetochore independently regulates its passive and active force-generating interfaces with microtubules

Long, A. F.; Udy, D. B.; Dumont, S.

10.1101/105916 — cell biology — Posted on 2017-02-03

758 Lipid order degradation in autoimmune demyelination probed by polarization resolved coherent Raman microscopy

Gasecka, P.; Jaouen, A.; Bioud, F.-Z.; De Aguiar, H. B.; Duboisset, J.; Ferrand, P.; Rigneault, H.; Balla, N. K.; Debarbieux, F.; Brasselet, S.

10.1101/105965 — biophysics — Posted on 2017-02-03

759 Structure of a AAA+ unfoldase in the process of unfolding substrate

Ripstein, Z. A.; Huang, R.; Augustyniak, R.; Kay, L. E.; Rubinstein, J. L.

10.1101/105866 — biochemistry — Posted on 2017-02-03

760 A scalable Bayesian method for integrating functional information in genome-wide association studies

Yang, J.; Fritsche, L. G.; Zhou, X.; Abecasis, G.; IAMDGC,

10.1101/101691 — genetics — Posted on 2017-02-03

761 Imputation aware tag SNP selection to improve power for multi-ethnic association studies

Wojcik, G. L.; Fuchsberger, C.; Taliun, D.; Welch, R.; Martin, A. R.; Shringarpure, S.; Carlson, C. S.; Abecasis, G.; Kang, H. M.; Boehnke, M.; Bustamante, C. D.; Gignoux, C. R.; Kenny, E. E.

10.1101/105551 — genomics — Posted on 2017-02-03

762 First indication of acetylcholine-based communication in honeybee haemocytes and its modulation by a neonicotinoid insecticide

Pamminger, T.; Basley, K.; Goulson, D.; Hughes, W. O.

10.1101/105700 — ecology — Posted on 2017-02-03

763 Immune Loss as a Driver of Coexistence During Host-Phage Coevolution

Weissman, J. L.; Holmes, R.; Barrangou, R.; Moineau, S.; Fagan, W. F.; Levin, B.; Johnson, P. L.

10.1101/105908 — ecology — Posted on 2017-02-03

764 A conserved signaling network monitors delivery of sphingolipids to the plasma membrane in budding yeast

Clarke, J. C.; Dephoure, N.; Horecka, I.; Gygi, S.; Kellogg, D.

10.1101/105841 — cell biology — Posted on 2017-02-03

765 Normalization of Mass Spectrometry Data (NOMAD)

Murie, C.; Sandri, B.; Griffin, T. J.; Wendt, C.; Larsson, O.

10.1101/105783 — bioinformatics — Posted on 2017-02-03

766 Persistent homology: a tool to universally measure plant morphologies across organs and scales

Li, M.; Frank, M. H.; Coneva, V.; Mio, W.; Topp, C. N.; Chitwood, D. H.

10.1101/104141 — plant biology — Posted on 2017-02-03

767 Acetazolamide reduces exercise capacity following a five-day ascent to 4559 m on Monte Rosa

Bradwell, A.; Ashdown, K.; Gallagher, C.; Delamere, J.; Thomas, O.; Lucas, S.; Wright, A.; Harris, S.; Myers, S.

10.1101/105726 — physiology — Posted on 2017-02-03

768 Effective synaptic interactions in subsampled nonlinear networks with strong coupling

Brinkman, B. A. W.; Rieke, F.; Shea-Brown, E.; Buice, M.

10.1101/105510 — neuroscience — Posted on 2017-02-03

769 Filter-banks and artificial intelligence in seizure detection using electroencephalograms

Pinto Orellana, M.; Ribeiro Cerqueira, F.

10.1101/105650 — neuroscience — Posted on 2017-02-03

770 Cocaine place conditioning strengthens location-specific hippocampal inputs to the nucleus accumbens

Sjulson, L.; Peyrache, A.; Cumpelik, A.; Cassataro, D.; Buzsaki, G.

10.1101/105890 — neuroscience — Posted on 2017-02-03

771 A population MRI brain template and analysis tools for the macaque

Seidlitz, J.; Sponheim, C.; Glen, D.; Ye, F. Q.; Saleem, K. S.; Leopold, D. A.; Ungerleider, L.; Messinger, A.

10.1101/105874 — neuroscience — Posted on 2017-02-03

772 VREX: An Open-Source Toolbox for Creating 3D Virtual Reality Experiments

Vasser, M.; Kangsepp, M.; Magomedkerimov, M.; Kilvits, K.; Stafinjak, V.; Kivisik, T.; Zafra, R. V.; Aru, J.

10.1101/105858 — neuroscience — Posted on 2017-02-03

773 Impact of hypoxia induced VEGF and its signaling during caudal fin regeneration in Zebrafish

sagayaraj, v.; Ragunathan, M.

10.1101/105767 — molecular biology — Posted on 2017-02-03

774 Patterns of genomic variation in the opportunistic pathogen Candida glabrata suggest the existence of mating and a secondary association to the human host

Carrete, L.; Ksiezopolska, E.; Pequeroles, C.; Gomez-Molero, E.; Saus, E.; Iraola-Guzman, S.; Loska, D.; Bader, O.; Fairhead, C.; Gabaldon, T.

10.1101/105791 — microbiology — Posted on 2017-02-03

775 Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica

10.1101/105759 — microbiology — Posted on 2017-02-03

776 Predicting susceptibility to tuberculosis based on gene expression profiling in dendritic cells

Blischak, J. D.; Tailleux, L.; Myrthil, M.; Charlois, C.; Bergot, E.; Dinh, A.; Morizot, G.; Cheny, O.; Von Platen, C.; Herrmann, J.-L.; Brosch, R.; Barreiro, L. B.; Gilad, Y.

10.1101/104729 — genomics — Posted on 2017-02-03

777 Free energy based high-resolution modeling of CTCF-mediated chromatin loops for human genome

Dawson, W.; Plewczynski, D.

10.1101/105676 — genomics — Posted on 2017-02-03

778 Reliable CRISPR/Cas9 genome engineering in Caenorhabiditis elegans using a single efficient sgRNA and an easily selectable phenotype

El Mouridi, S.; Lecroisey, C.; Tardy, P.; Mercier, M.; Leclercq-Blondel, A.; Zariohi, N.; Boulin, T.

10.1101/105718 — genetics — Posted on 2017-02-03

779 Interactions between genetic variation and cellular environment in skeletal muscle gene expression

Taylor, D. L.; Knowles, D. A.; Scott, L. J.; Ramirez, A. H.; Casale, F. P.; Wolford, B. N.; Guan, L.; Varshney, A.; Albanus, R. D.; Parker, S. C. J.; Narisu, N.; Chines, P. S.; Erdos, M. R.; Welch, R. P.; Kinnunen, L.; Saramies, J.; Sundvall, J.; Lakka, T. A.; Laakso, M.; Tuomilehto, J.; Koistinen, H. A.; Stegle, O.; Boehnke, M.; Birney, E.; Collins, F. S.

10.1101/105429 — genetics — Posted on 2017-02-03

780 Efficiency of genome-wide association study in random cross populations

Viana, J. M. S.; Mundim, G. B.; Pereira, H. D.; Andrade, A. C. B.; Silva, F. F.

10.1101/105833 — genetics — Posted on 2017-02-03

781 North Andean origin and diversification of the largest ithomiine butterfly genus

De-Silva, D. L.; Mota, L. L.; Chazot, N.; Mallarino, R.; Silva-Brandao, K. L.; Gomez Pinerez, L. M.; Freitas, A. V. L.; Lamas, G.; Joron, M.; Mallet, J.; Giraldo, C. E.; Uribe, S.; Sarkinen, T.; Knapp, S.; Jiggins, C. D.; Willmott, K. R.; Elias, M.

10.1101/105882 — evolutionary biology — Posted on 2017-02-03

782 Extensive Copy Number Variation in Fermentation-Related Genes among Saccharomyces cerevisiae Wine Strains

Steenwyk, J.; Rokas, A.

10.1101/105502 — evolutionary biology — Posted on 2017-02-03

783 The systematic conservation planning for intraspecific genetic diversity.

Paz-Vinas, I.; Loot, G.; Hermoso, V.; Veyssiere, C.; Poulet, N.; Grenouillet, G.; Blanchet, S.

10.1101/105544 — evolutionary biology — Posted on 2017-02-03

784 Bounds to Parapatric Speciation: A Dobzhansky-Muller incompatibility model involving autosomes, X chromosomes and mitochondria

Hoellinger, I.; Hermisson, J.

10.1101/104489 — evolutionary biology — Posted on 2017-02-03

785 Asian lineage of Zika virus RNA pseudoknot may induce ribosomal frameshift and produce a new neuroinvasive protein ZIKV-NS1’

Tambonis, T.; Contessoto, V.; Bittar, C.; Calmon, M. F.; Nogueira, M. L.; Rahal, P.; Leite, V. B. P.

10.1101/105809 — epidemiology — Posted on 2017-02-03

786 A risk assessment framework for seed degeneration: Informing an integrated seed health strategy for vegetatively-propagated crops

Thomas-Sharma, S.; Andrade-Piedra, J.; Carvajal Yepes, M.; Hernandez Nopsa, J.; Jeger, M.; Jones, R.; Kromann, P.; Legg, J.; Yuen, J.; Forbes, G.; Garrett, K. A.

10.1101/105361 — epidemiology — Posted on 2017-02-03

787 Assessment of the World Largest Afforestation Program: Success, Failure, and Future Directions

Zhu, J. J.; Zheng, X.; Wang, G. G.; Wu, B. F.; Liu, S. R.; Yan, C. Z.; Li, Y.; Sun, Y. R.; Yan, Q. L.; Zeng, Y.; Lu, S. L.; Li, X. F.; Song, L. N.; Hu, Z. B.; Yang, K.; Yan, N. N.; Li, X. S.; Gao, T.; Zhang, J. X.; Ellison, A.

10.1101/105619 — ecology — Posted on 2017-02-03

788 Hybridization affects life-history traits and host specificity in Diorhabda spp.

Bitume, E.; Bean, D.; Stahlke, A.; Hufbauer, R.

10.1101/105494 — ecology — Posted on 2017-02-03

789 CAFE MOCHA: An Integrated Platform for Discovering Clinically Relevant Molecular Changes in Cancer; an Example of Distant Metastasis and Recurrence-linked Classifiers in Head and Neck Squamous Cell Carcinoma

Krishnan, N. M.; I, M.; Hariharan, J.; Panda, B.

10.1101/105577 — cancer biology — Posted on 2017-02-03

790 VaPoR: a high-speed validation approach for structural variation using long-read sequencing technology.

Mills, R.; Zhao, X.; Weber, A. M.

10.1101/105817 — bioinformatics — Posted on 2017-02-03

791 QuASAR-MPRA: Accurate allele-specific analysis for massively parallel reporter assays

Kalita, C. A.; Moyerbrailean, G. A.; Brown, C.; Wen, X.; Luca, F.; Pique-Regi, R.

10.1101/105627 — bioinformatics — Posted on 2017-02-03

792 An Evaluation of Machine-learning for Predicting Phenotype: studies in yeast and wheat

Grinberg, N. F.; King, R. D.

10.1101/105528 — bioinformatics — Posted on 2017-02-03

793 The Dense-Core Vesicle Maturation Protein CCCP-1 Binds both RAB-2 and Membranes through a Conserved C-terminal Coiled-coil Domain

Cattin-Ortola, J.; Topalidou, I.; Dosey, A.; Merz, A. J.; Ailion, M.

10.1101/105668 — biochemistry — Posted on 2017-02-03

794 The promise of disease gene discovery in South Asia

Nakatsuka, N. J.; Moorjani, P.; Rai, N.; Sarkar, B.; Tandon, A.; Patterson, N.; Bhavani, G. S.; Girisha, K. M.; Mustak, M. S.; Srinivasan, S.; Kaushik, A.; Vahab, S. A.; Jagadeesh, S. M.; Satyamoorthy, K.; Singh, L.; Reich, D.; Thangaraj, K.

10.1101/047035 — evolutionary biology — Posted on 2017-02-03

795 Riparian vegetation limits oxidation of thermodynamically unfavorable bound-carbon stocks along an aquatic interface

Graham, E. B.; Tfaily, M.; Crump, A. R.; Goldman, A. E.; Arntzen, E.; Romero, E.; Resch, C. T.; Kennedy, D. W.; Stegen, J. C.

10.1101/105486 — ecology — Posted on 2017-02-03

796 Focus: The interface between data collection and data processing in cryo-EM

Biyani, N.; Righetto, R. D.; McLeod, R.; Caujolle-Bert, D.; Castano-Diez, D.; Goldie, K. N.; Stahlberg, H.

10.1101/105452 — biophysics — Posted on 2017-02-03

797 Microvessel Chaste: An Open Library for Spatial Modelling of Vascularized Tissues

Grogan, J.; Connor, A. J.; Markelc, B.; Muschel, R. J.; Maini, P. K.; Byrne, H. M.; Pitt-Francis, J. M.

10.1101/105692 — systems biology — Posted on 2017-02-03

798 Takeover times for a simple model of network infection

Ottino-Loffler, B.; Scott, J. G.; Strogatz, S. H.

10.1101/105585 — evolutionary biology — Posted on 2017-02-03

799 Epidemic establishment and cryptic transmission of Zika virus in Brazil and the Americas

Faria, N. R.; Quick, J.; Morales, I.; Theze, J.; de Jesus, J. G.; Giovanetti, M.; Kraemer, M. U. G.; Hill, S. C.; Black, A.; da Costa, A. C.; Franco, L. C.; Silva, S. P.; Wu, C.-H.; Ragwhani, J.; Cauchemez, S.; du Plessis, L.; Verotti, M. P.; Oliveira, W. K.; Carmo, E. H.; Coelho, G. E.; Santelli, A. C. F. E. S.; Vinhal, L. C.; Henriques, C. M. P.; Simpson, J.; Loose, M.; Andersen, K. G.; Grubaugh, N.; Somasekar, S.; Chiu, C. Y.; Lewis-Ximenez, L. L.; Baylis, S. A.; Chieppe, A. O.; Aguiar, S. F.; Fernandes, C. A.; Lemos, P. d. S.; Nascimento, B. L. S.; Monteiro, H. A. d. O.; Siqueira, I. C.; Q

10.1101/105171 — genomics — Posted on 2017-02-03

800 Spindle assembly checkpoint satisfaction occurs through end-on but not lateral kinetochore-microtubule interactions under tension

Kuhn, J. A.; Dumont, S.

10.1101/105460 — cell biology — Posted on 2017-02-03

801 Chromatin tethering to the nuclear envelope by nuclear actin filaments: a novel role of the actin cytoskeleton in the Xenopus blastula

Oda, H.; Shirai, N.; Ura, N.; Ohsumi, K.; Iwabuchi, M.

10.1101/105593 — cell biology — Posted on 2017-02-03

802 Cerebellar volume in autism: Meta-analysis and analysis of the ABIDE cohort

Traut, N.; Beggiato, A.; Bourgeron, T.; Delorme, R.; Rondi-Reig, L.; Paradis, A.-L.; Toro, R.

10.1101/104984 — neuroscience — Posted on 2017-02-03

803 TriPer, an optical probe tuned to the endoplasmic reticulum, tracks H2O2 consumption by glutathione

Melo, E. P.; Lopes, C.; Gollwitzer, P.; Lortz, S.; Lenzen, S.; Mehmeti, I.; Kaminski, C. F.; Ron, D.; Avezov, E.

10.1101/088351 — cell biology — Posted on 2017-02-03

804 BGDMdocker: an workflow base on Docker for analysis and visualization pan-genome and biosynthetic gene clusters of bacterial

Cheng, G.; Quan, L.; Zhou, Z.; Ma, L.; Zhang, G.; WU, Y.; Chen, C.

10.1101/098392 — bioinformatics — Posted on 2017-02-03

805 Meta-analysis of the variance ratio

Traut, N.

10.1101/104695 — bioinformatics — Posted on 2017-02-03

806 Multiple introductions of Zika virus into the United States revealed through genomic epidemiology

Grubaugh, N. D.; Ladner, J. T.; Kraemer, M. U.; Dudas, G.; Tan, A. L.; Gangavarapu, K.; Wiley, M. R.; White, S.; Theze, J.; Magnani, D. M.; Prieto, K.; Reyes, D.; Bingham, A.; Paul, L. M.; Robles-Sikisaka, R.; Oliveira, G.; Pronty, D.; Metsky, H. C.; Baniecki, M. L.; Barnes, K. G.; Chak, B.; Freije, C. A.; Gladden-Young, A.; Gnirke, A.; Luo, C.; MacInnis, B.; Matranga, C. B.; Park, D. J.; Qu, J.; Schaffner, S. F.; Tomkins-Tinch, C.; West, K. L.; Winnicki, S. M.; Wohl, S.; Yozwiak, N. L.; Quick, J.; Fauver, J. R.; Khan, K.; Brent, S. E.; Reiner, R. C.; Lichtenberger, P. N.; Ricciardi, M.; Baile

10.1101/104794 — epidemiology — Posted on 2017-02-03

807 Mendelian randomization: a novel approach for the prediction of adverse drug events and drugrepurposing opportunities

Walker, V. M.; Davey Smith, G.; Davies, N. M.; Martin, R. M.

10.1101/105338 — pharmacology and toxicology — Posted on 2017-02-02

808 Data-Driven Extraction of a Nested Structure of Human Cognition

Bolt, T.; Nomi, J.; Yeo, T.; Uddin, L.

10.1101/105403 — neuroscience — Posted on 2017-02-02

809 Sex chromosome evolution, heterochiasmy and physiological QTL in the salmonid Brook Charr Salvelinus fontinalis

Sutherland, B. J. G.; Rico, C.; Audet, C.; Bernatchez, L.

10.1101/105411 — genomics — Posted on 2017-02-02

810 Riparian vegetation limits oxidation of thermodynamically unfavorable bound-carbon stocks along an aquatic interface

Graham, E. B.; Tfaily, M.; Crump, A. R.; Goldman, A. E.; Arntzen, E.; Romero, E.; Resch, C. T.; Kennedy, D. W.; Stegen, J. C.

10.1101/105486 — ecology — Posted on 2017-02-02

811 Dynamic species classification of microorganisms across time, abiotic and biotic environments - a sliding window approach

Pennekamp, F.; Griffiths, J. I.; Fronhofer, E. A.; Seymour, M.; Garnier, A.; Altermatt, F.; Petchey, O. L.

10.1101/105395 — ecology — Posted on 2017-02-02

812 Cancer Cell Line Profiler (CCLP): a webserver for the prediction of compound activity across the NCI60 panel

Cortes-Ciriano, I.; Murrell, D.; Chetrit, B.; Bender, A.; Malliavin, T.; Ballester, P.

10.1101/105478 — bioinformatics — Posted on 2017-02-02

813 Two stochastic processes shape diverse senescence patterns in a single-cell organism

Steiner, U. K.; Lenart, A.; Ni, M.; Chen, P.; Song, X.; Taddei, F.; Lindner, A.; Vaupel, J.

10.1101/105387 — systems biology — Posted on 2017-02-02

814 Glucocorticoids change neural decoding in the middle cingulate cortex accompanied by a reduction of subjective fear in patients with spider phobia

Schwab, S.; Federspiel, A.; Morishima, Y.; Nakataki, M.; Strik, W.; Wiest, R.; Heinrichs, M.; de Quervain, D.; Soravia, L. M.

10.1101/099697 — neuroscience — Posted on 2017-02-02

815 Genomic insights and temperature-dependent transcriptional responses of Kosmotoga olearia, a deep-biosphere bacterium that can grow from 20°C to 79°C

Pollo, S. M. J.; Adebusuy, A. A.; Straub, T. J.; Foght, J. M.; Zhaxybayeva, O.; Nesbo, C. L.

10.1101/060053 — microbiology — Posted on 2017-02-02

816 It’s okay to be green: Draft genome of the North American bullfrog (Rana [Lithobates] catesbeiana)

Hammond, S. A.; Warren, R. L.; Vandervalk, B. P.; Kucuk, E.; Khan, H.; Gibb, E. A.; Pandoh, P.; Kirk, H.; Zhao, Y.; Jones, M.; Mungall, A. J.; Coope, R.; Pleasance, S.; Moore, R. A.; Holt, R. A.; Round, J. M.; Ohora, S.; Walle, B. V.; Veldhoen, N.; Helbing, C. C.; Birol, I.

10.1101/100149 — genomics — Posted on 2017-02-02

817 De Novo PacBio long-read and phased avian genome assemblies correct and add to genes important in neuroscience research

Korlach, J.; Gedman, G.; Kingan, S.; Chin, J.; Howard, J.; Cantin, L.; Jarvis, E. D.

10.1101/103911 — genomics — Posted on 2017-02-02

818 Modern human origins: multiregional evolution of autosomes and East Asia origin of Y and mtDNA

Yuan, D.; Lei, X.; Gui, Y.; Zhu, Z.; Wang, D.; Yu, J.; Huang, S.

10.1101/101410 — evolutionary biology — Posted on 2017-02-02

819 Demographic variability and heterogeneity among individuals within and among clonal bacteria strains

Jouvet, L.; Rodriguez-Rojas, A.; Steiner, U. K.

10.1101/105353 — evolutionary biology — Posted on 2017-02-02

820 Unifying concepts of biological function from molecules to ecosystems.

Farnsworth, K. D.; Albantakis, L.; Caruso, T.

10.1101/105320 — ecology — Posted on 2017-02-02

821 ATLAS: Analysis Tools for Low-depth and Ancient Samples

Link, V.; Kousathanas, A.; Veeramah, K.; Sell, C.; Scheu, A.; Wegmann, D.

10.1101/105346 — bioinformatics — Posted on 2017-02-02

822 Efficient Detection of Communities in Biological Bipartite Networks

Pesantez-Cabrera, P.; Kalyanaraman, A.

10.1101/105197 — bioinformatics — Posted on 2017-02-02

823 FecalSeq: methylation-based enrichment for noninvasive population genomics from feces

Chiou, K. L.; Bergey, C. M.

10.1101/032870 — genomics — Posted on 2017-02-02

824 Gene length as a regulator for ribosome recruitmentand protein synthesis: theoretical insights

D. Fernandes, L.; de Moura, A.; Ciandrini, L.

10.1101/105296 — systems biology — Posted on 2017-02-02

825 Inhibitory neuron diversity originates from cardinal classes shared across germinal zones.

Mayer, C.; Hafemeister, C.; Bandler, R. C.; Machold, R.; Fishell, G.; Satija, R.

10.1101/105312 — neuroscience — Posted on 2017-02-02

826 Progressive alterations in brain connectivity patterns revealed by diffusion-tensor brain networks across severity stages in Alzheimer’s disease

Rasero, J.; Alonso-Montes, C.; Diez, I.; Olabarrieta-Landa, L.; Remaki, L.; Escudero, I.; Mateos Goni, B.; Bonifazi, P.; Fernandez Martinez, M.; Arango-Lasprilla, J. C.; Stramaglia, S.; Cortes, J. M.

10.1101/105270 — neuroscience — Posted on 2017-02-02

827 Music-induced analgesia in chronic pain conditions: a systematic review and meta-analysis

Garza-Villarreal, E. A.; Pando, V.; Parsons, C.; Vuust, P.

10.1101/105148 — neuroscience — Posted on 2017-02-02

828 Cinnamon hydro alcoholic extract increased expression level of UCP3 gene in skeletal muscle of obese male Wistar Rats

Golmohammadi, E.; Mahmazi, S.; Rahnema, M.

10.1101/105155 — molecular biology — Posted on 2017-02-02

829 Scaling single cell transcriptomics through split pool barcoding

Rosenberg, A. B.; Roco, C.; Muscat, R. A.; Kuchina, A.; Mukherjee, S.; Chen, W.; Peeler, D. J.; Yao, Z.; Tasic, B.; Sellers, D. L.; Pun, S. H.; Seelig, G.

10.1101/105163 — genomics — Posted on 2017-02-02

830 Analysis and prediction of super-enhancers using sequence and chromatin signatures

Khan, A.; Zhang, X.

10.1101/105262 — genomics — Posted on 2017-02-02

831 Integrative genomics study of microglial transcriptome reveals effect of DLG4 (PSD95) on white matter in preterm infants.

Krishnan, M. L.; Van Steenwinckel, J.; Schang, A.-L.; Yan, J.; Arnadottir, J.; Le Charpentier, T.; Csaba, Z.; Dournaud, P.; Cipriani, S.; Auvynet, C.; Titomanlio, L.; Pansiot, J.; Ball, G.; Boardman, J. P.; Walley, A. J.; Saxena, A.; Mirza, G.; Fleiss, B.; Edwards, A. D.; Petretto, E. G.; Gressens, P.

10.1101/105288 — genomics — Posted on 2017-02-02

832 Epidemic establishment and cryptic transmission of Zika virus in Brazil and the Americas

10.1101/105171 — genomics — Posted on 2017-02-02

833 Comparative analysis of protein abundance studies to quantify the Saccharomyces cerevisiae proteome

Ho, B.; Baryshnikova, A.; Brown, G. W.

10.1101/104919 — bioinformatics — Posted on 2017-02-02

834 The rhythm of attentional stimulus selection during visual competition

Crouzet, S. M.; VanRullen, R.

10.1101/105239 — neuroscience — Posted on 2017-02-02

835 Phenoplasm: a database of disruption phenotypes for malaria parasite genes

Sanderson, T.; Rayner, J. C.

10.1101/101717 — genetics — Posted on 2017-02-02

836 Genetic equidistance at the nucleotide level

Yuan, D.; Huang, S.

10.1101/105072 — evolutionary biology — Posted on 2017-02-02

837 Metaviz: interactive statistical and visual analysis of metagenomic data

Wagner, J.; Chelaru, F.; Kancherla, J.; Paulson, J. N.; Felix, V.; Mahurkar, A.; Corrada Bravo, H.

10.1101/105205 — bioinformatics — Posted on 2017-02-02

838 Comprehensive single cell transcriptional profiling of a multicellular organism by combinatorial indexing

Cao, J.; Packer, J. S.; Ramani, V.; Cusanovich, D. A.; Huynh, C.; Daza, R.; Qiu, X.; Lee, C.; Furlan, S. N.; Steemers, F. J.; Adey, A.; Waterston, R. H.; Trapnell, C.; Shendure, J.

10.1101/104844 — genomics — Posted on 2017-02-02

839 p53 binding sites in normal and cancer cells are characterized by distinct chromatin context

Bao, F.; LoVerso, P. R.; Fisk, J. N.; Zhurkin, V. B.; Cui, F.

10.1101/105221 — genomics — Posted on 2017-02-02

840 Network analysis of the hominin origin of Herpes Simplex virus 2 from fossil data

Underdown, S.; Kumar, K.; Houldcroft, C.

10.1101/105007 — evolutionary biology — Posted on 2017-02-02

841 Insights on the importance of salinity from the first cultured freshwater SAR11 (LD12) representative

Henson, M. W.; Lanclos, V. C.; Thrash, J. C.

10.1101/093567 — microbiology — Posted on 2017-02-02

842 Insights into the genetic determinism and evolution of recombination rates from combining multiple genome-wide datasets in Sheep

Petit, M.; Astruc, J.-M.; Sarry, J.; Drouilhet, L.; Fabre, S.; Moreno, C.; Servin, B.

10.1101/104976 — genetics — Posted on 2017-02-02

843 A self-initiated two-alternative forced choice paradigm for head-fixed mice

Marbach, F.; Zador, A. M.

10.1101/073783 — neuroscience — Posted on 2017-02-02

844 High-throughput annotation of full-length long noncoding RNAs with Capture Long-Read Sequencing (CLS)

Lagarde, J.; Uszczynska-Ratajczak, B.; Carbonell, S.; Davis, C.; Gingeras, T. R.; Frankish, A.; Harrow, J.; Guigo, R.; Johnson, R.

10.1101/105064 — genomics — Posted on 2017-02-01

845 Effects of Historical Coinfection on Host Shift Abilities of Exploitative and Competitive Viruses

Singhal, S.; Turner, P.

10.1101/105114 — evolutionary biology — Posted on 2017-02-01

846 SkinnerTrax: high-throughput behavior-dependent optogenetic stimulation of Drosophila

Stern, U.; Yang, C.-H.

10.1101/080614 — neuroscience — Posted on 2017-02-01

847 Cerebellar volume in autism: Meta-analysis and analysis of the ABIDE cohort

Traut, N.; Beggiato, A.; Bourgeron, T.; Delorme, R.; Rondi-Reig, L.; Paradis, A.-L.; Toro, R.

10.1101/104984 — neuroscience — Posted on 2017-02-01

848 The effect of crack cocaine addiction and age on the microstructure and morphology of the human striatum and thalamus using shape analysis and fast diffusion kurtosis imaging.

Garza-Villarreal, E. A.; Chakravarty, M. M.; Hansen, B.; Eskildsen, S. F.; Devenyi, G. A.; Castillo-Padilla, D.; Balducci-Garcia, T.; Reyes-Zamorano, E.; Jespersen, S. N.; Perez-Palacios, P.; Patel, R.; Gonzalez-Olvera, J. J.

10.1101/066647 — neuroscience — Posted on 2017-02-01

849 Chromosomal rearrangements are commonly post-transcriptionally attenuated in cancer

Goncalves, E.; Fragoulis, A.; Garcia-Alonso, L.; Cramer, T.; Saez-Rodriguez, J.; Beltrao, P.

10.1101/093369 — genomics — Posted on 2017-02-01

850 Genome-wide detection of structural variants and indels by local assembly

Wala, J.; Bandopadhayay, P.; Greenwald, N.; O'Rourke, R.; Sharpe, T.; Stewart, C.; Schumacher, S. E.; Li, Y.; Weischenfeldt, J.; Yao, X.; Nusbaum, C.; Campbell, P.; Meyerson, M.; Zhang, C.-Z.; Imielinski, M.; Beroukhim, R.

10.1101/105080 — genomics — Posted on 2017-02-01

851 Insights into the genetic determinism andevolution of recombination rates fromcombining multiple genome-wide datasets inSheep

Petit, M.; Astruc, J.-M.; Sarry, J.; Drouilhet, L.; Fabre, S.; Moreno, C.; Servin, B.

10.1101/104976 — genetics — Posted on 2017-02-01

852 Bayesian analysis of genetic association across tree-structured routine healthcare data in the UK Biobank

Cortes, A.; Dendrou, C.; Motyer, A.; Jostins, L.; Vukcevic, D.; Dilthey, A.; Donnelly, P.; Leslie, S.; Fugger, L.; McVean, G.

10.1101/105122 — genetics — Posted on 2017-02-01

853 Partitioning the effects of eco-evolutionary feedbacks on community stability

Patel, S.; Cortez, M. H.; Schreiber, S. J.

10.1101/104505 — ecology — Posted on 2017-02-01

854 Unifying Population and Landscape Ecology with Spatial Capture-recapture

Royle, J. A.; Fuller, A. K.; Sutherland, C.

10.1101/103341 — ecology — Posted on 2017-02-01

855 Compaction of Duplex Nucleic Acids upon Native Electrospray Mass Spectrometry

Porrini, M.; Rosu, F.; Rabin, C.; Darre, L.; Gomez, H.; Orozco, M.; Gabelica, V.

10.1101/105049 — biophysics — Posted on 2017-02-01

856 Accurate prediction of single-cell DNA methylation states using deep learning

Angermueller, C.; Lee, H.; Reik, W.; Stegle, O.

10.1101/055715 — bioinformatics — Posted on 2017-02-01

857 Exploiting the sequence diversity of TALE-like repeats to vary the strength of dTALE-promoter interactions

de Lange, O.; Schandry, N.; Wunderlich, M.; Berendzen, K. W.; Lahaye, T.

10.1101/068908 — bioengineering — Posted on 2017-02-01

858 A Multi-Parameter Analysis of Cellular Coordination of Multiple Transcriptome Regulation Mechanisms

Jiang, W.; Guo, Z.; Lages, N.; Zheng, W. J.; Feliers, D.; Zhang, F.; Wang, D.

10.1101/104901 — systems biology — Posted on 2017-02-01

859 Modern human origins: multiregional evolution of autosomes and East Asia origin of Y and mtDNA

Yuan, D.; Lei, X.; Gui, Y.; Zhu, Z.; Wang, D.; Yu, J.; Huang, S.

10.1101/101410 — evolutionary biology — Posted on 2017-02-01

860 Applying Corrections in Single-Molecule FRET

Ingargiola, A.

10.1101/083287 — biophysics — Posted on 2017-02-01

861 annotatr: Genomic regions in context

Cavalcante, R. G.; Sartor, M. A.

10.1101/039685 — bioinformatics — Posted on 2017-02-01

862 Multi-ethnic polygenic risk scores improve risk prediction in diverse populations.

Marquez-Luna, C.; Loh, P.-R.; South Asian Type 2 Diabetes (SAT2D) Consortium, ; The SIGMA Type 2 Diabetes Consortium, ; Price, A. L.

10.1101/051458 — bioinformatics — Posted on 2017-02-01

863 Conserved properties of Drosophila Insomniac link sleep regulation and synaptic function

Li, Q.; Kellner, D. A.; Hatch, H. A. M.; Yumita, T.; Sanchez, S.; Machold, R. P.; Frank, C. A.; Stavropoulos, N.

10.1101/104893 — neuroscience — Posted on 2017-02-01

864 Antibiotic resistance genes in agriculture and urban influenced watersheds in southwestern British Columbia

Uyaguari, M. I.; Croxen, M. A.; Luo, Z.; Cronin, K.; Chan, M.; Baticados, W. N.; Nesbitt, M. J.; Li, S.; Miller, K.; Dooley, D.; Hsiao, W.; Isaac-Renton, J. L.; Tang, P.; Prystajecky, N.

10.1101/104851 — microbiology — Posted on 2017-02-01

865 CRISPR-Cas9 targeted disruption of the yellow ortholog in the housefly identifies the brown body locus

Heinze, S. D.; Kohlbrenner, T.; Ippolito, D.; Meccariello, A.; Burger, A.; Mosimann, C.; Saccone, G.; Bopp, D.

10.1101/105023 — genetics — Posted on 2017-02-01

866 propr: An R-package for Identifying Proportionally Abundant Features Using Compositional Data Analysis

Quinn, T.; Richardson, M. F.; Lovell, D.; Crowley, T.

10.1101/104935 — bioinformatics — Posted on 2017-02-01

867 Task learning reveals neural signatures of internal models in rodent prefrontal cortex

Singh, A.; Peyrache, A.; Humphries, M. D.

10.1101/027102 — neuroscience — Posted on 2017-02-01

868 Polysome-profiling in small tissue samples

Liang, S.; Bellato, H.; Lorent, J.; Lupinacci, F.; Van Hoef, V.; Masvidal, L.; Hajj, G.; Larsson, O.

10.1101/104596 — molecular biology — Posted on 2017-02-01

869 An annotated draft genome for Radix auricularia(Gastropoda, Mollusca)

Schell, T.; Feldmeyer, B.; Schmidt, H.; Greshake, B.; Tills, O.; Truebano, M.; Rundle, S. D.; Paule, J.; Ebersberger, I.; Pfenninger, M.

10.1101/087254 — genomics — Posted on 2017-02-01

870 Rapid Automated Large Structural Variation Detection in a Diploid Genome by NanoChannel Based Next-Generation Mapping

Hastie, A. R.; Lam, E. T.; Pang, A. W. C.; Zhang, L. X.; Andrews, W.; Lee, J.; Liang, T. Y.; Wang, J.; Zhou, X.; Zhu, Z.; Anantharaman, T.; Zdzakula, Z.; Bocklandt, S.; Surti, U.; Saghbini, M.; Austin, M.; Borodkin, M.; Holmlin, R. E.; Cao, H.

10.1101/102764 — genomics — Posted on 2017-02-01

871 Morphogen signalling patterns calcium waves in the Drosophila wing disc

Wu, Q.; Brodskiy, P.; Narciso, C.; Levis, M.; Arredondo-Walsh, N.; Zartman, J. J.

10.1101/104745 — developmental biology — Posted on 2017-02-01

872 BMP signaling orchestrates a transcriptional network to control the fate of mesenchymal stem cells (MSCs)

Feng, J.; Jing, J.; Li, J.; Zhao, H.; Punj, V.; Zhang, T.; Xu, J.; Chai, Y.

10.1101/104927 — developmental biology — Posted on 2017-02-01

Archive, 2017-02