bioRxiv directory

Ittiprasert, W.; Mann, V. H.; Karinshak, S. E.; Coghlan, A.; Rinaldi, G.; Sankaranarayanan, G.; Chaidee, A.; Tanno, T.; Kumkhaek, C.; Prangtaworn, P.; Mentink-Kane, M. J.; Cochran, C. J.; Driguez, P.; Holroyd, N.; Tracey, A.; Rodpai, R. H.; Everts, B.; Hokke, C. H.; Hoffmann, K. F.; Brindley, P. J.

10.1101/358424 — molecular biology — Posted on 2018-07-31

3 Embracing scale-dependence to achieve a deeper understanding of biodiversity and its change across communities

Chase, J.; McGill, B.; McGlinn, D. J.; May, F.; Blowes, S. A.; Xiao, X.; Knight, T. M.; Purschke, O.; Gotelli, N. J.

10.1101/275701 — ecology — Posted on 2018-07-31

4 Towards fast and reliable simultaneous EEG-fMRI analysis of epilepsy with automatic spike detection

Omidvarnia, A.; Kowalczyk, M.; Pedersen, M.; Jackson, G.

10.1101/361113 — neuroscience — Posted on 2018-07-31

5 Short term depression shapes information transmission in a constitutively active GABAergic synapse

Lavian, H.; Korngreen, A.

10.1101/370833 — neuroscience — Posted on 2018-07-31

6 Genetic discovery and translational decision support from exome sequencing of 20,791 type 2 diabetes cases and 24,440 controls from five ancestries

Flannick, J. A.; Mercader, J. M. M.; Fuchsberger, C.; Udler, M. S.; Mahajan, A.; Wessel, J.; DiscovEHR Collaboration, ; CHARGE, ; LuCamp, ; ProDiGY, ; GoT2D, ; ESP, ; SIGMA-T2D, ; T2D-GENES, ; AMP-T2D-GENES, ; Altshuler, D.; Burtt, N. P.; Scott, L.; Morris, A.; Florez, J.; McCarthy, M.; Boehnke, M.

10.1101/371450 — genetics — Posted on 2018-07-31

7 Astrocytes integrate local sensory and brain-wide neuromodulatory signals.

Slezak, M.; Kandler, S.; Van Veldhoven, P. P.; Bonin, V.; Holt, M. G.

10.1101/381434 — neuroscience — Posted on 2018-07-31

8 Robust dynamical invariants in sequential neural activity

Elices, I.; Levi, R.; Arroyo, D.; Rodriguez, F. d. B. B.; Varona, P.

10.1101/379909 — neuroscience — Posted on 2018-07-31

9 The genetic prehistory of the Andean highlands 7,000 Years BP though European contact

Lindo, J.; Haas, R.; Hofman, C.; Apata, M.; Moraga, M.; Verdugo, R.; Watson, J. T.; Llave, C.; Witonsky, D.; Pacheco, E.; Villena, M.; Soria, R.; Beall, C.; Warinner, C.; Novembre, J.; Aldenderfer, M.; Di Rienzo, A.

10.1101/381905 — genomics — Posted on 2018-07-31

10 Torsional stress generated by ADF/cofilin on cross-linked actin filaments boosts their severing

Wioland, H.; Jegou, A.; Romet-Lemonne, G.

10.1101/380113 — biophysics — Posted on 2018-07-31

11 A Robust Method to Estimate the Largest Lyapunov Exponent of Noisy Signals: A Revision to the Rosenstein’s Algorithm

Mehdizadeh, S.

10.1101/381111 — biophysics — Posted on 2018-07-31

12 Lesion Attributes Segmentation for Melanoma Detection with Deep Learning

Chen, E. Z.; Dong, X.; Wu, J.; Jiang, H.; Li, X.; Rong, R.

10.1101/381855 — bioinformatics — Posted on 2018-07-31

13 Biotrophic interactions disentangled: In-situ localisation of mRNAs to decipher plant and algal pathogen - host interactions at single cell level.

Badstoeber, J.; Gachon, C. M. M.; Sandbichler, A. M.; Neuhauser, S.

10.1101/378794 — plant biology — Posted on 2018-07-31

14 Test-Retest Reliability of Task-based and Resting-state Blood Oxygen Level Dependence and Cerebral Blood Flow measures

Holiga, S.; Sambataro, F.; Lucy, C.; Greig, G.; Sarkar, N.; Renken, R. J.; Marsman, J.-B. C.; Schobel, S. A.; Bertolino, A.; Dukart, J.

10.1101/381251 — neuroscience — Posted on 2018-07-31

15 Assembly of Mb-size genome segments from linked read sequencing of CRISPR DNA targets

Shin, G.; Greer, S. U.; Xia, L. C.; Lee, H.; Zhou, J.; Boles, T. C.; Ji, H. P.

10.1101/373142 — genomics — Posted on 2018-07-31

16 Dissecting transcriptomic signatures of neuronal differentiation and maturation using iPSCs

Burke, E. E.; Chenoweth, J. G.; Shin, J. H.; Collado-Torres, L.; Kim, S. K.; Micali, N.; Wang, Y.; Straub, R. E.; Hoeppner, D. J.; Chen, H.-Y.; Lescure, A.; Shibbani, K.; Hamersky, G. R.; Phan, B. N.; Ulrich, W. S.; Valencia, C.; Jaishankar, A.; Price, A. J.; Rajpurohit, A.; Semick, S. A.; Bürli, R.; Barrow, J. C.; Hiler, D. J.; Page, S. C.; Martinowich, K.; Hyde, T. M.; Kleinman, J. E.; Berman, K. F.; Apud, J. A.; Cross, A. J.; Brandon, N. J.; Weinberger, D. R.; Maher, B. J.; McKay, R. D.; Jaffe, A. E.

10.1101/380758 — genomics — Posted on 2018-07-31

17 Analysis of microbial community structure of pit mud for Chinese strong-flavor liquor fermentation using next generation DNA sequencing of full-length 16S rRNA

Liu, Z.; Han, Y.; Li, J.; Cao, R.; He, H.; Li, A.; Zhang, Z.

10.1101/380949 — molecular biology — Posted on 2018-07-31

18 Insecticide-Releasing LLDPE Films as Greenhouse Cover Materials

Avaz Seven, S.; Tastan, O. F.; Tas, C. E.; Unal, H.; Ince, I. A.; Menceloglu, Y. Z.

10.1101/381426 — microbiology — Posted on 2018-07-31

19 Lewis rat NLRP1 inflammasome activation is mediated by three Toxoplasma gondii dense granule proteins

Wang, Y.; Cirelli, K. M.; Barros, P. D.; Sangare, L. O.; Butty, V.; Hassan, M. A.; Pesavento, P. A.; Mete, A.; Saeij, J. P.

10.1101/381202 — microbiology — Posted on 2018-07-31

20 A novel bioactive molecule 5-β-Hydroxyltridecanyl benzoate identified in Pedalium Murex L. (Gokhru) fruit extracts showed antifungal activity against Sclerotinia sclerotiorum

Chaudhary, G.; Kaushik, N.; Reddy, P. M.

10.1101/381244 — microbiology — Posted on 2018-07-31

21 Single-cell copy number variant detection reveals the dynamics and diversity of adaptation

Lauer, S.; Avecilla, G.; Spealman, P.; Sethia, G.; Brandt, N.; Levy, S.; Gresham, D.

10.1101/381590 — evolutionary biology — Posted on 2018-07-31

22 The Cdc42 GEF, Gef1, promotes uniform protein distribution along the actomyosin ring to enable concentric furrowing

Onwubiko, U.; Mlynarczyk, P. J.; Wei, B.; Habiyaremye, J.; Clack, A.; Abel, S. M.; Das, M.

10.1101/381863 — cell biology — Posted on 2018-07-31

23 Heterozygous mutations in p97 and resistance to p97 inhibitors

Bastola, P.; Minn, K.; Chien, J.

10.1101/380964 — cancer biology — Posted on 2018-07-31

24 Effect of de novo transcriptome assembly on transcript quantification

Hsieh, P.-H.; Oyang, Y.-J.; Chen, C.-Y.

10.1101/380998 — bioinformatics — Posted on 2018-07-31

25 Batch Effect Removal via Batch-Free Encoding

Shaham, U.

10.1101/380816 — bioinformatics — Posted on 2018-07-31

26 Alcohol-responsive genes identified in human iPSC-derived neural cultures

Jensen, K.; Lieberman, R.; Kranzler, H.; Gelernter, J.; Covault, J.

10.1101/381673 — neuroscience — Posted on 2018-07-31

27 Mnemonic introspection in macaques is dependent on dorsolateral prefrontal but not orbitofrontal cortex

Kwok, S. C.; Cai, Y.; Buckley, M. J.

10.1101/381293 — neuroscience — Posted on 2018-07-31

28 Rudhira/BCAS3 couples microtubules and intermediate filaments to promote cell migration for angiogenic remodeling

Joshi, D.; Inamdar, M. S.

10.1101/381384 — molecular biology — Posted on 2018-07-31

29 Statistical optimization of culture conditions to improve cell density of Komagataeibacter medellinensis NBRC 3288: the first step towards to optimize bacterial cellulose production

Molina-Ramirez, C.; Zuluaga, R.; Castro, C.; Ganan, P.

10.1101/381186 — microbiology — Posted on 2018-07-31

30 Quick and efficient approach to develop genomic resources in orphan species: application in Lavandula angustifolia

Fopa Fomeju, B.; Brunel, D.; Berard, A.; Rivoal, J.-B.; Gallois, P.; Le Paslier, M.-C.; Bouverat-Bernier, J.-P.

10.1101/381400 — genomics — Posted on 2018-07-31

31 Fitness-dependent recombination can be evolutionarily advantageous in diploids: a deterministic mutation-selection balance model

Rybnikov, S. R.; Frenkel, Z. M.; Korol, A. B.

10.1101/381228 — evolutionary biology — Posted on 2018-07-31

32 The Integrated Rapid Infectious Disease Analysis (IRIDA) Platform

Matthews, T. C.; Bristow, F. R.; Griffiths, E. J.; Petkau, A.; Adam, J.; Dooley, D.; Kruczkiewicz, P.; Curatcha, J.; Cabral, J.; Fornika, D.; Winsor, G. L.; Courtot, M.; Bertelli, C.; Roudgar, A.; Feijao, P.; Mabon, P.; Enns, E.; Thiessen, J.; Keddy, A.; Isaac-Renton, J.; Gardy, J. L.; Tang, P.; The IRIDA Consortium, ; Carrico, J. A.; Chindelevitch, L.; Chauve, C.; Graham, M. R.; McArthur, A. G.; Taboada, E. N.; Beiko, R. G.; Brinkman, F. S.; Hsiao, W. W.; Van Domselaar, G.

10.1101/381830 — bioinformatics — Posted on 2018-07-31

33 Investigating the unknown functions in the minimal bacterial genome reveals many transporter proteins

Antczak, M.; Michaelis, M.; Wass, M.

10.1101/381657 — synthetic biology — Posted on 2018-07-31

34 Selective auxin agonists induce specific AUX/IAA protein degradation to modulate plant development

Vain, T.; Raggi, S.; Ferro, N.; Barange, D. K.; Kieffer, M.; Ma, Q.; Doyle, S. M.; Thelander, M.; Parizkova, B.; Novak, O.; Ismail, A.; Enquist, P. A.; Rigal, A.; Łangowska, M.; Harborough, S. R.; Zhang, Y.; Ljung, K.; Callis, J.; Almqvist, F.; Kepinski, S.; Estelle, M.; Pauwels, L.; Robert, S.

10.1101/381608 — plant biology — Posted on 2018-07-31

35 IPSE, a urogenital parasite-derived immunomodulatory protein, ameliorates ifosfamide-induced hemorrhagic cystitis through downregulation of pro-inflammatory pathways

Mbanefo, E.; Le, L.; Zee, R.; Banskota, N.; Ishida, K.; Pennington, L.; Odegaard, J.; Jardetzky, T.; Alouffi, A.; Falcon, F.; Hsieh, M.

10.1101/381764 — immunology — Posted on 2018-07-31

36 The C-type lectin Schlaff ensures epidermal barrier compactness in Drosophila

Zuber, R.; Shaik, K. S.; Meyer, F.; Ho, H.-N.; Speidel, A.; Gehring, N.; Bartoszewski, S.; Schwarz, H.; Moussian, B.

10.1101/381491 — cell biology — Posted on 2018-07-31

37 A positive feedback loop drives centrosome maturation in flies

Alvarez Rodrigo, I.; Conduit, P. T.; Baumbach, J.; Novak, Z. A.; Aydogan, M. G.; Wainman, A.; Raff, J. W.

10.1101/380907 — cell biology — Posted on 2018-07-31

38 Mitochondrial biogenesis is transcriptionally repressed in lysosomal lipid storage diseases

Yambire, K. F.; Fernandez-Mosquera, L.; Steinfeld, R.; Muehle, C.; Ikonen, E.; Milosevic, I.; Raimundo, N.

10.1101/381376 — cell biology — Posted on 2018-07-31

39 High-throughput Automated Single Cell Imaging Analysis Reveals Dynamics Of Glioblastoma Stem Cell Population During State Transition

Chumakova, A. P.; Hitomi, M.; Sulman, E. P.; Lathia, J. D.

10.1101/381715 — cancer biology — Posted on 2018-07-31

40 Coherent-hybrid STED: a tunable photo-physical pinhole for super-resolution imaging at high contrast

Pereira, A. J.; Sousa, M.; Almeida, A. C.; Ferreira, L. T.; Costa, A. R.; Novais-Cruz, M.; Ferras, C.; Sousa, M. M.; Sampaio, P.; Belsley, M.; Maiato, H.

10.1101/381343 — biophysics — Posted on 2018-07-31

41 Using machine learning to predict antimicrobial minimum inhibitory concentrations and associated genomic features for nontyphoidal Salmonella

Nguyen, M.; Long, S. W.; McDermott, P. F.; Olsen, R. J.; Olson, R.; Stevens, R. L.; Tyson, G. H.; Zhao, S.; Davis, J. J.

10.1101/380782 — bioinformatics — Posted on 2018-07-31

42 FASTCAR: Rapid alignment-free prediction of sequence alignment identity scores

James, B. T.; Luczak, B. B.; Girgis, H. Z.

10.1101/380824 — bioinformatics — Posted on 2018-07-31

43 Urinary protein changes in the early phase of smoking-induced Chronic Obstructive Pulmonary Disease in a rat model

Huang, H.; Wang, T.; Gao, Y.

10.1101/381053 — biochemistry — Posted on 2018-07-31

44 In silico prioritization of transporter-drug relationships from drug sensitivity screens

Cesar-Razquin, A.; Girardi, E.; Yang, M.; Brehme, M.; Saez-Rodriguez, J.; Superti-Furga, G.

10.1101/381335 — pharmacology and toxicology — Posted on 2018-07-31

45 How do dopamine neurons resolve a tradeoff between performance and energy?

Song, M. R.; Lee, S. W. W.

10.1101/381103 — neuroscience — Posted on 2018-07-31

46 Sexually dimorphic gene expression and transcriptome evolution provides mixed evidence for a fast-Z effect in Heliconius

Pinharanda, A.; Rousselle, M.; Martin, S. H.; Hanly, J. J.; Davey, J. W.; Kumar, S.; Galtier, N.; Jiggins, C. D.

10.1101/380030 — evolutionary biology — Posted on 2018-07-31

47 Triple A patient cells suffering from mitotic defects fail to localize PGRMC1 to mitotic kinetochore fibers

Jühlen, R.; Landgraf, D.; Hübner, A.; Köhler, K.

10.1101/381541 — cell biology — Posted on 2018-07-31

48 The BK channel gating ring is strongly coupled to the voltage sensor

Miranda, P.; Holmgren, M.; Giraldez, T.

10.1101/381319 — biophysics — Posted on 2018-07-31

49 Designing robust N-of-1 studies for precision medicine

Percha, B.; Baskerville, E. B.; Johnson, M.; Dudley, J.; Zimmerman, N.

10.1101/380980 — bioinformatics — Posted on 2018-07-31

50 Spontaneous network activity accounts for variability in stimulus-induced gamma responses

Hirschmann, J.; Baillet, S.; Schnitzler, A.; Woolrich, M.; Vidaurre, D.; Esther, F.

10.1101/381236 — neuroscience — Posted on 2018-07-31

51 Resolving the complex Bordetella pertussis genome using barcoded nanopore sequencing

Ring, N.; Abrahams, J.; Jain, M.; Olsen, H.; Preston, A.; Bagby, S.

10.1101/381640 — microbiology — Posted on 2018-07-31

52 Quantitative approaches to variant classification increase the yield and precision of genetic testing in Mendelian diseases: The case of hypertrophic cardiomyopathy

Walsh, R.; Mazzarotto, F.; Whiffin, N.; Buchan, R.; Midwinter, W.; Wilk, A.; Li, N.; Felkin, L.; Ingold, N.; Govind, R.; Ahmad, M.; Mazaika, E.; Allouba, M.; Zhang, X.; de Marvao, A.; Day, S. M.; Ashley, E.; Colan, S. D.; Michels, M.; Pereira, A. C.; Jacoby, D.; Ho, C. Y.; Thomson, K. L.; Watkins, H.; Barton, P. J.; Olivotto, I.; Cook, S. A.; Ware, J. S.

10.1101/381467 — genetics — Posted on 2018-07-31

53 Low genetic variation is associated with low mutation rate in the giant duckweed

Xu, S.; Stapley, J.; Gablenz, S.; Boyer, J.; Appenroth, K. J.; Sree, S. K.; Gershenzon, J.; Widmer, A.; Huber, M. S. C.

10.1101/381574 — genetics — Posted on 2018-07-31

54 Ral signals through a MAP4 Kinase-p38 MAP kinase cascade in C. elegans cell fate patterning.

Shin, H.; Kaplan, R. E. W.; Duong, T.; Fakieh, R.; Reiner, D. J.

10.1101/381707 — developmental biology — Posted on 2018-07-31

55 Quantitative Interactome Proteomics Reveals a Molecular Basis for ATF6-Dependent Regulation of a Destabilized Amyloidogenic Protein

Plate, L.; Rius, B.; Nguyen, B.; Genereux, J.; Kelly, J. W.; Wiseman, R. L.

10.1101/381525 — cell biology — Posted on 2018-07-31

56 Genome-wide silencing screen in mesothelioma cells reveals that loss of function of BAP1 induces chemoresistance to ribonucleotide reductase inhibition: implication for therapy

Okonska, A.; Buehler, S.; Rao, V.; Ronner, M.; Blijlevens, M.; Van der Meulen-Muileman, I.; de Menezes, R.; Smit, E.; Weder, W.; Stahel, R.; Penengo, L.; van Beusechem, V.; Felley-Bosco, E.

10.1101/381533 — cancer biology — Posted on 2018-07-31

57 Application of an Interpretable Classification Model on Early Folding Residues during Protein Folding

Bittrich, S.; Kaden, M.; Leberecht, C.; Kaiser, F.; Villmann, T.; Labudde, D.

10.1101/381483 — bioinformatics — Posted on 2018-07-31

58 The CMG helicase bypasses DNA protein cross-links to facilitate their repair

Sparks, J. L.; Gao, A. O.; Raschle, M.; Larsen, N. B.; Mann, M.; Duxin, J. P.; Walter, J. C.

10.1101/381582 — biochemistry — Posted on 2018-07-31

59 Quantifying the effects of head movement on magnetic resonance spectroscopy estimates of gamma-aminobutyric acid

Cui, E. D.; Maddock, R. J.; Buonocore, M. H.; Ozturk, M.; Yoon, J. H.

10.1101/381699 — neuroscience — Posted on 2018-07-31

60 Architecture of parallel adaptation to freshwater in multiple populations of threespine stickleback

Terekhanova, N. V.; Barmintseva, A. E.; Kondrashov, A. S.; Bazykin, G. A.; Mugue, N. S.

10.1101/381723 — evolutionary biology — Posted on 2018-07-31

61 Modelling bistable tumour population dynamics to design effective treatment strategies

Akhmetzhanov, A. R.; Kim, J. W.; Sullivan, R.; Beckman, R. A.; Tamayo, P.; Yeang, C.-H.

10.1101/381418 — cancer biology — Posted on 2018-07-31

62 The patterns of vascular plant discoveries in China

Lu, M.; He, F.

10.1101/381731 — plant biology — Posted on 2018-07-31

63 The Evolution of White Matter Changes After Mild Traumatic Brain Injury: A DTI and NODDI Study

Palacios, E.; Owen, J. P.; Yuh, E. L.; Wang, M. B.; Vassar, M. J.; Ferguson, A. R.; Diaz-Arrastia, R.; Giacino, J. T.; Okonkwo, D. O.; Robertson, C. S.; Stein, M. B.; Temkin, N.; Jain, S.; McCrea, M.; Mac Donald, C. L.; Levin, H. S.; Manley, G. T.; Mukherjee, P.; TRACK-TBI Investigators,

10.1101/345629 — neuroscience — Posted on 2018-07-31

64 New de novo assembly of the Atlantic bottlenose dolphin (Tursiops truncatus) improves genome completeness and provides haplotype phasing.

Martinez-Viaud, K. A.; Lawley, C. T.; Vergara, M. M.; Ben-Zvi, G.; Biniashvili, T.; Baruch, K.; St. Leger, J.; Le, J.; Natarjan, A.; Rivera, M.; Gillergan, N.; Jaeger, E.; Steffy, B.; Zimin, A.

10.1101/376301 — genomics — Posted on 2018-07-31

65 Structural insights on TRPV5 gating by endogenous modulators

Hughes, T. E. T.; Pumroy, R. A.; Yazici, A. T.; Kasimova, M. A.; Fluck, E. C.; Huynh, K. W.; Samanta, A.; Molugu, S.; Zhou, Z. H.; Carnevale, V.; Rohacs, T.; Moiseenkova-Bell, V. Y.

10.1101/338798 — biophysics — Posted on 2018-07-31

66 An automated, machine learning-based detection algorithm for spike-wave discharges (SWDs) in a mouse model of absence epilepsy

Pfammatter, J. A.; Maganti, R. K.; Jones, M. V.

10.1101/309146 — neuroscience — Posted on 2018-07-31

67 RppH can faithfully replace TAP to allow cloning of 5’-triphosphate carrying small RNAs

V. Almeida, M.; de Jesus Domingues, A. M.; Lukas, H.; Mendez-Lago, M.; Ketting, R. F.

10.1101/283077 — molecular biology — Posted on 2018-07-31

68 Human noise blindness drives suboptimal cognitive inference

Herce Castanon, S.; Bang, D.; Moran, R.; Ding, J.; Egner, T.; Summerfield, C.

10.1101/268045 — neuroscience — Posted on 2018-07-31

69 Auxiliary subunits keep AMPA receptors compact during activation and desensitization

Baranovic, J.; Plested, A. J. R.

10.1101/295105 — biophysics — Posted on 2018-07-31

70 Livestock genome annotation: transcriptome and chromatin structure profiling in cattle, goat, chicken and pig

Foissac, S.; Djebali, S.; Munyard, K.; Vialaneix, N.; Rau, A.; Muret, K.; Esquerre, D.; Zytnicki, M.; Derrien, T.; Bardou, P.; Blanc, F.; Cabau, C.; Crisci, E.; Dhorne-Pollet, S.; Drouet, F.; Gonzalez, I.; Goubil, A.; Lacroix-Lamande, S.; Laurent, F.; Marthey, S.; Marti-Marimon, M.; Momal-Leisenring, R.; Mompart, F.; Quere, P.; Robelin, D.; San Cristobal, M.; Tosser-Klopp, G.; Vincent-Naulleau, S.; Fabre, S.; Pinard-Van der Laan, M.-H.; Klopp, C.; Tixier-Boichard, M.; Acloque, H.; Lagarrigue, S.; Giuffra, E.

10.1101/316091 — genomics — Posted on 2018-07-31

71 Group size effects in social evolution

Pena, J.; Nöldeke, G.

10.1101/319350 — evolutionary biology — Posted on 2018-07-31

72 Acute inflammation sensitizes knee-innervating sensory neurons and decreases mouse digging behavior in a TRPV1-dependent manner

Chakrabarti, S.; Pattison, L. A.; Singhal, K.; Hockley, J. R.; Callejo, G.; Smith, E. S. J.

10.1101/350637 — neuroscience — Posted on 2018-07-31

73 Hook-length of the bacterial flagellum is optimized for maximal stability of the flagellar bundle

Spöring, I.; Martinez, V. A.; Hotz, C.; Schwarz-Linek, J.; Grady, K. L.; Nava-Sedeno, J. M.; Vissers, T.; Singer, H. M.; Rohde, M.; Bourquin, C.; Hatzikirou, H.; Poon, W. C.; Dufour, Y.; Erhardt, M.

10.1101/336602 — microbiology — Posted on 2018-07-31

74 Positive-feedback defines the timing and robustness of angiogenesis

Page, D. J.; Thuret, R.; Venkatraman, L.; Takahashi, T.; Bentley, K.; Herbert, S. P.

10.1101/374389 — developmental biology — Posted on 2018-07-31

75 Mitochondrial RNA capping: highly efficient 5’-RNA capping with NAD+ and NADH by yeast and human mitochondrial RNA polymerase

Bird, J. G.; Basu, U.; Kuster, D.; Ramachandran, A.; Grudzien-Nogalska, E.; Kiledjian, M.; Temiakov, D.; Patel, S. S.; Ebright, R. H.; Nickels, B. E.

10.1101/381160 — biochemistry — Posted on 2018-07-31

76 Negative memory engrams in the hippocampus enhance the susceptibility to chronic social defeat stress

Zhang, T. R.; Larosa, A.; Di Raddo, M.-E.; Wong, V.; Wong, A. S.; Wong, T. P.

10.1101/379669 — animal behavior and cognition — Posted on 2018-07-31

77 A chromosome scale assembly of the model desiccation tolerant grass Oropetium thomaeum

VanBuren, R.; Wai, C. M.; Keilwagen, J.; Pardo, J.

10.1101/378943 — plant biology — Posted on 2018-07-31

78 Modeling the MYC-driven normal-to-tumour switch in breast cancer.

Lourenco, C.; Kalkat, M.; Houlahan, K. E.; De Melo, J.; Longo, J.; Done, S. J.; Boutros, P. C.; Penn, L. Z.

10.1101/380931 — cancer biology — Posted on 2018-07-31

79 Effects of depression on prefrontal striatal goal directed and habitual control

Heo, S.; Lee, S. W.

10.1101/381152 — neuroscience — Posted on 2018-07-31

80 How optimal foragers should respond to habitat changes? On the consequences of habitat conversion.

Calcagno, V.; Hamelin, F.; Mailleret, L.; Grognard, F.

10.1101/273557 — ecology — Posted on 2018-07-31

81 Polygenic scores for UK Biobank scale data

Mak, T.; Porsch, R. M.; Choi, S. W.; Sham, P. C.

10.1101/252270 — genomics — Posted on 2018-07-31

82 Loss of generalist plant species and functional diversity decreases the robustness of a seed dispersal network

Bastazini, V. A. G.; Debastiani, V. J.; Azambuja, B. O.; Guimaraes, P. R.; Pillar, V. D.

10.1101/187179 — ecology — Posted on 2018-07-31

83 Molecular Diversity of Intrinsically Photosensitive Ganglion Cells

Berg, D.; Kartheiser, K.; Leyrer, M.; Saali, A.; Berson, D.

10.1101/381004 — neuroscience — Posted on 2018-07-31

84 Modeling the MYC-driven normal-to-tumour switch in breast cancer.

Lourenco, C.; Kalkat, M.; Houlahan, K. E.; De Melo, J.; Longo, J.; Done, S. J.; Boutros, P. C.; Penn, L. Z.

10.1101/380931 — cancer biology — Posted on 2018-07-31

85 Precision measurement of cis-regulatory energetics in living cells

Forcier, T.; Ayaz, A.; Gill, M. S.; Jones, D.; Phillips, R.; Kinney, J. B.

10.1101/380972 — biophysics — Posted on 2018-07-31

86 Instilling Good Knowledge, Attitude and Practices among the Indigenous People of Malaysia Concerning Dog Associated Zoonotic Infections

rashid, a.; Fong, L. S.; Megat Abd Rani, P. A.; Kader Maideen, S. F.; Shafie, I. N. F.; Ahmad, N. I.; Mustaffa Kamal, F.; Ajat, M.; Omar, S.

10.1101/381350 — epidemiology — Posted on 2018-07-31

87 High-resolution 4D spatiotemporal analysis reveals the contributions of local growth dynamics to contrasting maize root system architectures

Jiang, N.; Floro, E.; Bray, A. L.; Laws, B.; Topp, C. N.

10.1101/381046 — plant biology — Posted on 2018-07-31

88 Structural basis of ECF-sigma-factor-dependent transcription initiation.

Lin, W.; Mandal, S.; Degen, D.; Cho, M.; Feng, Y.; Das, K.; Ebright, R. H.

10.1101/381020 — molecular biology — Posted on 2018-07-31

89 Evolution of limb development in cephalopod mollusks

Tarazona, O. A.; Lopez, D. H.; Slota, L. A.; Cohn, M. J.

10.1101/379735 — developmental biology — Posted on 2018-07-31

90 Developmental fidelity imposed by the RGL-1 balanced switch mediating opposing signals

Shin, H.; Braendle, C.; Monahan, K. B.; Kaplan, R. E. W.; Zand, T. P.; Mote, F. S.; Craig, D. R.; Peters, E.; Reiner, D. J.

10.1101/381012 — genetics — Posted on 2018-07-31

91 Robust representation of natural images by sparse and variable population of active neurons in visual cortex

Yoshida, T.; Ohki, K.

10.1101/300863 — neuroscience — Posted on 2018-07-30

92 Suppressor analysis uncovers that MAPs and microtubule dynamics balance with the Cut7/Kinesin-5 motor for mitotic spindle assembly in Schizosaccharomyces pombe

Toda, T.; Yukawa, M.; Yamada, Y.

10.1101/380493 — genetics — Posted on 2018-07-30

93 Multi-SKAT: General framework to test multiple phenotype associations of rare variants

Dutta, D.; Scott, L.; Boehnke, M.; Lee, S.

10.1101/229583 — genetics — Posted on 2018-07-30

94 Bumblebee visual allometry results in locally improved resolution and globally improved sensitivity

Taylor, G. J.; Tichit, P.; Schmidt, M. D.; Bodey, A. J.; Rau, C.; Baird, E.

10.1101/380527 — neuroscience — Posted on 2018-07-30

95 Exogenous attention facilitates performance through dissociable sensitivity and bias mechanisms

Sagar, V.; Sengupta, R.; Sridharan, D.

10.1101/380659 — neuroscience — Posted on 2018-07-30

96 Human Sound Localization Depends on Sound Intensity: Implications for Sensory Coding

Ihlefeld, A.; Alamatsaz, N.; Shapley, R. M.

10.1101/378505 — neuroscience — Posted on 2018-07-30

97 Connectivity dynamics from wakefulness to sleep

Damaraju, E.; Tagliazucchi, E.; Laufs, H.; Calhoun, V.

10.1101/380741 — neuroscience — Posted on 2018-07-30

98 Studying the fate of tumor extracellular vesicles at high spatio-temporal resolution using the zebrafish embryo

Hyenne, V.; Ghoroghi, S.; Collot, M.; Harlepp, S.; Bauer, J.; Mercier, L.; Busnelli, I.; Lefebvre, O.; Fekonja, N.; Machado, P.; Bons, J.; Delalande, F.; Amor, A. I.; Silva, S. G.; Verweij, F. J.; Van Niel, G.; Schwab, Y.; Peinado, H.; Carapito, C.; Klymchenko, A. S.; Goetz, J. G.

10.1101/380238 — cell biology — Posted on 2018-07-30

99 Genome sequence of the wheat stem sawfly, Cephus cinctus, a primitive hymenopteran and wheat pest, illuminates evolution of hymenopteran chemoreceptors

Robertson, H. M.; Waterhouse, R. M.; Walden, K. K.; Ruzzante, L.; Reijnders, M. J.; Coates, B. S.; Legeai, F.; Gress, J. C.; Biyiklioglu, S.; Weaver, D. K.; Wanner, K. W.; Budak, H.

10.1101/380873 — genomics — Posted on 2018-07-30

100 Considerations for imaging thick, low contrast, and beam sensitive samples with liquid cell transmission electron microscopy

Moser, T. H.; Shokuhfar, T.; Evans, J. E.

10.1101/380923 — cell biology — Posted on 2018-07-30

101 polyRAD: Genotype calling with uncertainty from sequencing data in polyploids and diploids

Clark, L. V.; Lipka, A. E.; Sacks, E. J.

10.1101/380899 — bioinformatics — Posted on 2018-07-30

102 Continuous State HMMs for Modeling Time Series Single Cell RNA-Seq Data

Lin, C.; Bar-Joseph, Z.

10.1101/380568 — systems biology — Posted on 2018-07-30

103 Predicting negative control drugs to support research in drug safety

Hao, Y.; Tatonetti, N. P.

10.1101/380832 — pharmacology and toxicology — Posted on 2018-07-30

104 Measurement of vaccine direct effects under the test-negative design

Lewnard, J. A.; Tedijanto, C.; Cowling, B. J.; Lipsitch, M.

10.1101/237503 — epidemiology — Posted on 2018-07-30

105 Two case studies detailing Bayesian parameter inference for dynamic energy budget models

Boersch-Supan, P. H.; Johnson, L. R.

10.1101/259705 — physiology — Posted on 2018-07-30

106 Generative adversarial networks simulate gene expression and predict perturbations in single cells

Ghahramani, A.; Watt, F. M.; Luscombe, N. M.

10.1101/262501 — genomics — Posted on 2018-07-30

107 Transdiagnostic characterization of neuropsychiatric disorders by hyperexcitation-induced immaturity

Murano, T.; Hagihara, H.; Tajinda, K.; Matsumoto, M.; Miyakawa, T.

10.1101/376962 — neuroscience — Posted on 2018-07-30

108 Precise Slow Oscillation-Spindle Coupling Promotes Memory Consolidation in Younger and Older Adults

Muehlroth, B. E.; Sander, M. C.; Fandakova, Y.; Grandy, T. H.; Rasch, B.; Shing, Y. L.; Werkle-Bergner, M.

10.1101/268474 — neuroscience — Posted on 2018-07-30

109 Polycomb repressive complex 1 shapes the nucleosome landscape but not accessibility at target genes.

King, H. W.; Fursova, N. A.; Blackledge, N. P.; Klose, R. J.

10.1101/280305 — genomics — Posted on 2018-07-30

110 A vital dye method in nematodes reveals age is a critical parameter in density-dependent plasticity

Werner, M. S.; Claassen, M.; Renahan, T.; Dardiry, M.; Sommer, R. J.

10.1101/291591 — developmental biology — Posted on 2018-07-30

111 Characterizing the relation of functional and Early Folding Residues in protein structures using the example of aminoacyl-tRNA synthetases

Bittrich, S.; Schroeder, M.; Labudde, D.

10.1101/290627 — bioinformatics — Posted on 2018-07-30

112 Fast and flexible bacterial genomic epidemiology with PopPUNK

Lees, J. A.; Harris, S. R.; Tonkin-Hill, G.; Gladstone, R. A.; Lo, S. W.; Weiser, J. N.; Corander, J.; Bentley, S. D.; Croucher, N. J.

10.1101/360917 — genomics — Posted on 2018-07-30

113 Haplotypes spanning centromeric regions reveal persistence of large blocks of archaic DNA

Langley, S. A.; Miga, K.; Karpen, G. H.; Langley, C. H.

10.1101/351569 — genomics — Posted on 2018-07-30

114 Discovery of psychoactive plant and mushroom alkaloids in behavior-modifying fungal cicada pathogens

Boyce, G.; Gluck-Thaler, E.; Slot, J. C.; Stajich, J. E.; Davis, W. J.; James, T. Y.; Cooley, J. R.; Panaccione, D. G.; Eilenberg, J.; De Fine Licht, H. H.; Macias, A. M.; Berger, M. C.; Wickert, K. L.; Stauder, C. M.; Spahr, E. J.; Maust, M. D.; Metheny, A. M.; Simon, C.; Kritsky, G.; Hodge, K. T.; Humber, R. A.; Gullion, T.; Short, D. P. G.; Kijimoto, T.; Mozgai, D.; Arguedas, N.; Kasson, M. T.

10.1101/375105 — ecology — Posted on 2018-07-30

115 The USTC complex co-opts an ancient machinery to drive piRNA transcription in C. elegans

Weng, C.; Kosalka, A.; Berkyurek, A. C.; Stempor, P.; Feng, X.; Mao, H.; Zeng, C.; Li, W.-J.; Yan, Y.-H.; Dong, M.-Q.; Zuliani, C.; Barabas, O.; Ahringer, J.; Guang, S.; Miska, E.

10.1101/377390 — developmental biology — Posted on 2018-07-30

116 Degeneracy in hippocampal physiology and plasticity

Rathour, R. K.; Narayanan, R.

10.1101/203943 — neuroscience — Posted on 2018-07-30

117 Noise-driven Cell Differentiation and the Emergence of Organization

Safdari, H.; Kalirad, A.; Picioreanu, C.; Tusserkani, R.; Goliaei, B.; Sadeghi, M.

10.1101/220525 — developmental biology — Posted on 2018-07-30

118 Living Neural Networks: Dynamic Network Analysis of Developing Neural Progenitor Cells

Mahadevan, A. S.; Grandel, N. E.; Robinson, J. T.; Francis, K. R.; Qutub, A. A.

10.1101/055533 — neuroscience — Posted on 2018-07-30

119 Zelda potentiates transcription factor binding to zygotic enhancers by increasing local chromatin accessibility during early Drosophila melanogaster embryogenesis.

Li, X.-Y.; Eisen, M. B.

10.1101/380857 — developmental biology — Posted on 2018-07-30

120 Ecological Representations

Golonka, S.; Wilson, A. D.

10.1101/058925 — animal behavior and cognition — Posted on 2018-07-30

121 Whole genome screen reveals a novel relationship between Wolbachia and Drosophila host translation

Grobler, Y.; Yun, C. Y.; Kahler, D. J.; Bergman, C. M.; Lee, H.; Oliver, B.; Lehmann, R.

10.1101/380485 — microbiology — Posted on 2018-07-30

122 Haplotype-phased Callithrix jacchus embryonic stem cell line for genome editing using CRISPR/Cas9

Zhou, B.; Ho, S. S.; Leung, L. C.; Ward, T. R.; Ho, M.; Plastini, M. J.; Vermilyea, S. C.; Emborg, M. E.; Golos, T. G.; Mourrain, P.; Perrin, D.; Parker, K. J.; Urban, A. E.

10.1101/373886 — genetics — Posted on 2018-07-30

123 Stress response, behavior, and development are shaped by transposable element-induced mutations in Drosophila

Rech, G. E.; Bogaerts-Marquez, M.; Barron, M. G.; Merenciano, M.; Villanueva-Canas, J. L.; Horvath, V.; Fiston-Lavier, A.-S.; Luyten, I.; Venkataram, S.; Quesneville, H.; Petrov, D. A.; Gonzalez, J.

10.1101/380618 — evolutionary biology — Posted on 2018-07-30

124 Clownfishes are a genetic model of exceptional longevity and reveal molecular convergence in the evolution of lifespan

Sahm, A.; Almaida-Pagan, P.; Bens, M.; Mutalipassi, M.; Lucas-Sanchez, A.; de Costa Ruiz, J.; Goerlach, M.; Cellerino, A.

10.1101/380709 — evolutionary biology — Posted on 2018-07-30

125 SREBP1 drives KRT80-dependent cytoskeletal changes and invasive behavior in endocrine resistant ERα breast cancer

Magnani, L.; Perone, Y.; Farrugia, A.; Meira, A.; Gyorffy, B.; Ion, C.; Uggetti, A.; Patten, D.; Chronopoulos, A.; Faronato, M.; Shousha, S.; Steel, J.; Davies, C.; Patel, N.; del Rio Hernandez, A.; Coombes, R.; Pruneri, G.; Lim, A.; Calvo, F.

10.1101/380634 — cancer biology — Posted on 2018-07-30

126 Sibe: a computation tool to apply protein sequence statistics to folding and design

Cheung, N. J.; Yu, W.

10.1101/380576 — bioinformatics — Posted on 2018-07-30

127 Ring nucleases deactivate Type III CRISPR ribonucleases by degrading cyclic oligoadenylate

Athukoralage, J. S.; Rouillon, C.; Graham, S.; Grueschow, S.; White, M. F.

10.1101/380436 — biochemistry — Posted on 2018-07-30

128 Choline Transporter in α/β core neurons of Drosophila mushroom body non-canonically regulates pupal eclosion and maintains neuromuscular junction integrity

Hamid, R.; Hajirnis, N.; Kushwaha, S.; Saleem, S.; Kumar, V.; Mishra, R. K.

10.1101/380519 — developmental biology — Posted on 2018-07-30

129 Drosophila insulin-like peptide dilp1 increases lifespan and glucagon-like Akh expression epistatic to dilp2

Post, S.; Liao, S.; Yamamoto, R.; Vennstra, J. A.; Nässel, D. R.; Tatar, M.

10.1101/380410 — physiology — Posted on 2018-07-30

130 Imaging the evolution of visual specializations in fungus gnats

Taylor, G. J.; Hall, S. A.; Gren, J. A.; Baird, E.

10.1101/290841 — evolutionary biology — Posted on 2018-07-30

131 Detecting within-host interactions using genotype combination prevalence data

Alizon, S.; Murall, C. L.; Saulnier, E.; Sofonea, M. T.

10.1101/256586 — epidemiology — Posted on 2018-07-30

132 Functional Testing of Thousands of Osteoarthritis-Associated Variants for Regulatory Activity

Klein, J. C.; Keith, A.; Rice, S.; Shepherd, C.; Loughlin, J.; Shendure, J.

10.1101/379727 — genomics — Posted on 2018-07-30

133 A weighted burden test using logistic regression for integrated analysis of sequence variants, copy number variants and polygenic risk score

Curtis, D.

10.1101/306191 — genetics — Posted on 2018-07-30

134 Mapping and Analysis of QTL for Early Maturity Trait in Tetraploid Potato (Solanum tuberosum L.)

Jin, L.; Li, G.; Li, X.; Xu, J.; Duan, S.; Zhang, J.; Bian, C.; Hu, J.

10.1101/380501 — genetics — Posted on 2018-07-30

135 Suppressor analysis uncovers that MAPs and microtubule dynamics balance with the Cut7/Kinesin-5 motor for mitotic spindle assembly in Schizosaccharomyces pombe

Toda, T.; Yukawa, M.; Yamada, Y.

10.1101/380493 — genetics — Posted on 2018-07-30

136 Lemon: a modern C++ tool for the rapid development of structural benchmarking datasets

Fine, J.; Chopra, G.

10.1101/379891 — bioinformatics — Posted on 2018-07-30

137 Characterizing drug resistance using geometric ensembles from HIV protease dynamics

Sheik Amamuddy, O.; Bishop, N. T.; Tastan Bishop, O.

10.1101/379958 — bioinformatics — Posted on 2018-07-30

138 Performance of gene expression analyses using de novo assembled transcripts in polyploid species

Chen, L.-Y.; Morales-Briones, D. F.; Passow, C. N.; Yang, Y.

10.1101/380063 — bioinformatics — Posted on 2018-07-30

139 PBLR: an accurate single cell RNA-seq data imputation tool considering cell heterogeneity and prior expression level of dropouts

Zhang, L.; Zhang, S.

10.1101/379883 — bioinformatics — Posted on 2018-07-30

140 Pannexin-1 mediated ATP release in adipocytes is sensitive to glucose and insulin and modulates lipolysis and macrophage migration

Tozzi, M.; Hansen, J. B.; Novak, I.

10.1101/380469 — physiology — Posted on 2018-07-30

141 MemBright: a Family of Fluorescent Membrane Probes for Advanced Cellular Imaging and Neuroscience

Collot, M.; ashokkumar, p.; Anton, H.; Boutant, E.; Faklaris, O.; Galli, T.; Mely, Y.; Danglot, L.; Klymchenko, A. S.

10.1101/380451 — neuroscience — Posted on 2018-07-30

142 Phylodynamic analysis of the historical spread of Toscana virus around the Mediterranean

CUSI, M. G.; Gandolfo, C.; Gori Savellini, G.; Terrosi, C.; Sadler, R. A.; Gatherer, D.

10.1101/380477 — microbiology — Posted on 2018-07-30

143 Quantifying GC-biased gene conversion in great ape genomes using polymorphism-aware models

Borges, R.; Szöllosi, G.; Kosiol, C.

10.1101/380246 — genetics — Posted on 2018-07-30

144 Link Your Sites (LYS.py): Coupling your PAML codeml results and homologous protein structures in PyMOL

Sanz Moreta, L.; Rodrigues da Fonseca, R. A.

10.1101/380394 — bioinformatics — Posted on 2018-07-30

145 Hif-1alpha induced expression of Il-1beta protects against mycobacterial infection in zebrafish

Ogryzko, N. V.; Lewis, A.; Wilson, H. L.; Meijer, A. H.; Renshaw, S. A.; Elks, P. M.

10.1101/306506 — immunology — Posted on 2018-07-30

146 Selection for protein stability enriches for epistatic interactions

Posfai, A.; Zhou, J.; Plotkin, J. B.; Kinney, J. B.; McCandlish, D. M.

10.1101/338004 — evolutionary biology — Posted on 2018-07-30

147 A re-inducible gap gene cascade patterns the anterior-posterior axis of insects in a threshold-free fashion

Boos, A.; Distler, J.; Rudolf, H.; Klingler, M.; El-Sherif, E.

10.1101/321786 — developmental biology — Posted on 2018-07-30

148 Transient DNA Binding Induces RNA Polymerase II Compartmentalization During Herpesviral Infection Distinct From Phase Separation

McSwiggen, D. T.; Hansen, A. S.; Marie-Nelly, H.; Teves, S.; Heckert, A.; Dugast-Darzacq, C.; Hao, Y.; Umemoto, K. K.; Tjian, R.; Darzacq, X.

10.1101/375071 — biophysics — Posted on 2018-07-30

149 Functionally distinct ERAP1 and ERAP2 are a hallmark of HLA-A29-(Birdshot) Uveitis.

Kuiper, J. J.; Setten, J. v.; Devall, M.; Cretu-Stancu, M.; Hiddingh, S.; Ophoff, R. A.; Missotten, T.; Velthoven, M. v.; Hollander, A. D.; Hoyng, C.; James, E.; Reeves, E.; Cordero-Coma, M.; Fonollosa, A.; Adan, A.; Martin, J.; Koeleman, B. P.; de Boer, J. H.; Pulit, S. L.; Marquez, A. M.; Radstake, T. R.

10.1101/338228 — genetics — Posted on 2018-07-30

150 How exerting control over outcomes affects the neural coding of tasks and outcomes

Wisniewski, D.; Forstmann, B.; Brass, M.

10.1101/375642 — neuroscience — Posted on 2018-07-30

151 Offline impact of transcranial focused ultrasound on cortical activation in primates

Verhagen, L.; Gallea, C.; Folloni, D.; Constans, C.; Jensen, D.; Ahnine, H.; Roumazeilles, L.; Santin, M.; Ahmed, B.; Lehericy, S.; Klein-Flugge, M.; Krug, K.; Mars, R. B.; Rushworth, M. F.; Pouget, P.; Aubry, J.-F.; Sallet, J.

10.1101/342337 — neuroscience — Posted on 2018-07-30

152 Universal metabolic constraints on the thermal tolerance of marine phytoplankton

Barton, S.; Jenkins, J.; Buckling, A.; Schaum, C.- E.; Smirnoff, N.; Yvon-Durocher, G.

10.1101/358002 — ecology — Posted on 2018-07-30

153 Every which way? On predicting tumor evolution using cancer progression models

Diaz-Uriarte, R.; Vasallo Vega, C.

10.1101/371039 — bioinformatics — Posted on 2018-07-30

154 Transdiagnostic characterization of neuropsychiatric disorders by hyperexcitation-induced immaturity

Murano, T.; Hagihara, H.; Tajinda, K.; Matsumoto, M.; Miyakawa, T.

10.1101/376962 — neuroscience — Posted on 2018-07-30

155 The Project MinE databrowser: bringing large-scale whole-genome sequencing in ALS to researchers and the public

van der Spek, R. A. A.; van Rheenen, W.; Pulit, S. L.; Kenna, K. P.; McLaughlin, R. L.; Moisse, M.; Dekker, A. M.; Tazelaar, G. H. P.; Kenna, B.; van Eijk, K. R.; van Vugt, J. J. F. A.; van Doormaal, P. T. C.; Middelkoop, B.; Schellevis, R. D.; Brands, W. J.; Byrne, R.; Cooper-Knock, J.; Al Khleifat, A.; Campos, Y.; Vural, A.; Glass, J. D.; Iacoangeli, A.; Shatunov, A.; Sproviero, W.; Kavak, E.; Seker, T.; Akcimen, F.; Kocoglu, C.; Tunca, C.; Ticozzi, N.; Kooyman, M.; Redondo, A. G.; Blair, I.; Wray, N. R.; Kiernan, M. C.; de Carvalho, M.; Drory, V.; Gotkine, M.; Andersen, P. M.; Corcia, P.; C

10.1101/377911 — genomics — Posted on 2018-07-30

156 Identification of a primitive intestinal transcription factor network shared between oesophageal adenocarcinoma and its pre-cancerous precursor state

Rogerson, C.; Britton, E.; Withey, S.; Hanley, N.; Ang, Y.; Sharrocks, A. D.

10.1101/373068 — cancer biology — Posted on 2018-07-30

157 Comprehensive analysis of retinal development at single cell resolution identifies NFI factors as essential for mitotic exit and specification of late-born cells

Clark, B.; Stein-O'Brien, G.; Shiau, F.; Cannon, G.; Davis, E.; Sherman, T.; Rajaii, F.; James-Esposito, R.; Gronostajski, R.; Fertig, E.; Goff, L.; Blackshaw, S.

10.1101/378950 — developmental biology — Posted on 2018-07-30

158 How do citizens perceive farm animal welfare conditions in Brazil?

Queiroz, R. G. d.; Domingues, C. H. d. F.; Canozzi, M. E. A.; Garcia, R. G.; Ruviaro, C. F.; Barcellos, J. O. J.; Borges, J. A. R.

10.1101/380550 — scientific communication and education — Posted on 2018-07-30

159 A Mouse Model Of Binge Alcohol Consumption and Burkholderia Infection

Jimenez, V.; Moreno, R.; Settles, E.; Currie, B. J.; Keim, P.; Monroy, F.

10.1101/380683 — immunology — Posted on 2018-07-30

160 Mucosal immunoglobulins protect the olfactory organ of teleost fish against parasitic infection

Yu, Y.; Kong, W.; Yin, Y.; Dong, F.; Huang, Z.; Yin, G.; Dong, S.; Salinas, I.; Zhang, Y.-A.; xu, z.

10.1101/380691 — immunology — Posted on 2018-07-30

161 Competition for a limited pool of cohesin between centromeres and the rDNA triggers chromosomal instability that shortens replicative lifespan

Fine, R.; Maqani, N.; Li, M.; Franck, E.; Smith, J. S.

10.1101/380675 — genetics — Posted on 2018-07-30

162 Female vocalizations predict reproductive output in Brown-headed Cowbirds (Molothrus ater)

Kohn, G. M.

10.1101/380642 — animal behavior and cognition — Posted on 2018-07-30

163 Cross-species alcohol dependence-associated gene networks: Co-analysis of mouse brain gene expression and human genome-wide association data

Mignogna, K. M.; Bacanu, S. A.; Riley, B. P.; Wolen, A. R.; Miles, M. F.

10.1101/380584 — genetics — Posted on 2018-07-30

164 The Structural Extraction of Chinese Medical Narratives

Zhang, R.; Yao, Z.; Zhang, H.; Huang, Z.

10.1101/380626 — bioinformatics — Posted on 2018-07-30

165 On the Depth of Deep Learning Models for Splice Site Identification

Elsousy, R.; Kathiresan, N.; Boughorbel, S.

10.1101/380667 — bioinformatics — Posted on 2018-07-30

166 Measurements of maize root plasticity under water stress in hydroponic chamber

Jubery, T. Z.; Liu, S.; Lubberstedt, T.; Ganapathysubramanian, B.; Attinger, D.

10.1101/380592 — physiology — Posted on 2018-07-30

167 Oncogenic effects of germline mutations in lysosomal storage disease genes

Shin, J.; Kim, D.; Kim, H.-L.; Choi, M.; Korbel, J.; Yoon, S.-S.; Koh, Y.; ICGC/TCGA Pan-Cancer Analysis of Whole Genomes Network,

10.1101/380121 — genetics — Posted on 2018-07-30

168 The tumor suppressor p53 promotes carcinoma invasion and collective cellular migration

HE, S.; Carman, C. V.; Lee, J. H.; Lan, B.; Koehler, S.; Atia, L.; Park, C. Y.; Kim, J. H.; Mitchel, J. A.; Park, J.-A.; Butler, J. P.; Lee, S. W.; Fredberg, J.

10.1101/380600 — cancer biology — Posted on 2018-07-30

169 Natural selection on TMPRSS6 associated with the blunted erythropoiesis and improved blood viscosity in Tibetan Pigs

Kong, X.; Dong, X.; Yang, S.; Qian, J.; Yang, J.; Jiang, Q.; Li, X.; Wang, B.; Yan, D.; Lu, S.; Mao, H.; Gou, X.

10.1101/380543 — physiology — Posted on 2018-07-30

170 Drug adaptation influences cardiotoxicity caused by tyrosine kinase inhibitors in iPSC-derived human cardiomyocytes

Wang, H.; Sheehan, R. P.; Palmer, A. C.; Everley, R. A.; Boswell, S. A.; Ron-Harel, N.; Holton, K. M.; Jacobson, C. A.; Erickson, A.; Maliszewski, L.; Haigis, M. C.; Sorger, P. K.

10.1101/365841 — pharmacology and toxicology — Posted on 2018-07-30

171 Frugivory and seed dispersal by chelonians: A review and synthesis

Falcon, W.; Hansen, D. M.; Moll, D.

10.1101/379933 — ecology — Posted on 2018-07-30

172 Live tracking of inter-organ communication by endogenous exosomes in vivo

Verweij, F. J.; Revenu, C.; Arras, G.; Dingli, F.; Damarys, L.; Follain, G.; Allio, G.; Goetz, J.; Herbomel, P.; Del Bene, F.; Raposo, G.; van Niel, G.

10.1101/380311 — cell biology — Posted on 2018-07-30

173 Overexpression of Arabidopsis ubiquitin ligase AtPUB46 enhances tolerance to drought and oxidative stress

Adler, G.; Mishra, A. K.; Maymon, T.; Raveh, D.; Bar-Zvi, D.

10.1101/379859 — plant biology — Posted on 2018-07-30

174 A single cis-element that controls cell-type specific expression in Arabidopsis

Knerova, J.; Dickinson, P. J.; Szecowka, M.; Burgess, S. J.; Mulvey, H.; Bagman, A.-M.; Gaudinier, A.; Brady, S. M.; Hibberd, J. M.

10.1101/380188 — plant biology — Posted on 2018-07-30

175 A practical guide to linking brain-wide gene expression and neuroimaging data

Arnatkeviciute, A.; Fulcher, B. D.; Fornito, A.

10.1101/380089 — neuroscience — Posted on 2018-07-30

176 Detecting clinically actionable variants in the 3’ exons of PMS2 via a reflex workflow based on equivalent hybrid capture of the gene and its pseudogene

Gould, G. M.; Grauman, P. V.; Theilmann, M. R.; Spurka, L.; Wang, I. E.; Melroy, L. M.; Chin, R. G.; Hite, D. H.; Chu, C. S.; Maguire, J. R.; Hogan, G. J.; Muzzey, D.

10.1101/379693 — genomics — Posted on 2018-07-30

177 The macrocyclizing protease butelase 1 remains auto-catalytic and reveals the structural basis for ligase activity

James, A. M.; Haywood, J.; Leroux, J.; Ignasiak, K.; Elliott, A. G.; Schmidberger, J. W.; Fisher, M. F.; Nonis, S. G.; Fenske, R.; Bond, C. S.; Mylne, J. S.

10.1101/380295 — biophysics — Posted on 2018-07-30

178 SuperFreq: Integrated mutation detection and clonal tracking in cancer

Flensburg, C.; Sargeant, T.; Oshlack, A.; Majewski, I.

10.1101/380097 — bioinformatics — Posted on 2018-07-30

179 Genetics of mouse Tas1r3-independent sucrose intake

Lin, C.; Bachmanov, A. A.; Tordoff, M. G.; Beauchamp, G. K.; Reed, D. R.

10.1101/379347 — animal behavior and cognition — Posted on 2018-07-30

180 Glutathione-S-transferase from the arsenic hyperaccumulator fern Pteris vittata can confer increased arsenate resistance in Escherichia coli

Khan, A. A.; Ellis, D. R.; Huang, X.; Norton, G. J.; Meharg, A. A.; Salt, D. E.; Csonka, L. N.

10.1101/379511 — plant biology — Posted on 2018-07-30

181 Evolution of neocortical folding: A phylogenetic comparative analysis of MRI from 33 primate species

Heuer, K.; Gulban, O. F.; Bazin, P.-L.; Osoianu, A.; Valabregue, R.; Santin, M.; Herbin, M.; Toro, R.

10.1101/379750 — neuroscience — Posted on 2018-07-30

182 Brain dynamics and temporal trajectories during task and naturalistic processing

Venkatesh, M.; Jaja, J.; Pessoa, L.

10.1101/380402 — neuroscience — Posted on 2018-07-30

183 Constitutively active RAS in S. pombe causes persistent Cdc42 signalling but only transient MAPK activation

Kelsall, E. J.; Vertesy, A.; Straatman, K.; Tariq, M.; Gadea, R.; Parmar, C.; Schreiber, G.; Randhawa, S.; Dominguez, C.; Klipp, E.; Tanaka, K.

10.1101/380220 — molecular biology — Posted on 2018-07-30

184 Repeated Measures Regression In Laboratory, Clincal And Enviromental Research - Different Between/Within Subject Slopes And Common Misconceptions

Hoover, D. R.; Shi, Q.; Anastos, K.

10.1101/374124 — epidemiology — Posted on 2018-07-30

185 Bangers and cash: Baiting efficiency in a heterogeneous population.

Indigo, N. L.; Smith, J.; Webb, J. K.; Phillips, B.

10.1101/379743 — ecology — Posted on 2018-07-30

186 Strategies to improve photosynthetic nitrogen-use efficiency with no yield penalty: lessons from late-sown winter wheat

Yin, L.; Xu, H.; Dong, S.; Chu, J.; Dai, X.; He, M.

10.1101/379552 — cell biology — Posted on 2018-07-30

187 Asymmetric Distribution of Glucose Transporter mRNA Provides Growth Advantage

Stahl, T.; Hümmer, S.; Ehrenfeuchter, N.; Fucile, G.; Spang, A.

10.1101/380279 — cell biology — Posted on 2018-07-30

188 A framework for analysis of real-time nucleic acid amplification data using novel multidimensional standard curves

Moniri, A.; Rodriguez-Manzano, J.; Georgiou, P.

10.1101/379180 — bioinformatics — Posted on 2018-07-30

189 Explore or reset? Pupil diameter transiently increases in self-chosen switches between cognitive labor and leisure in either direction

Algermissen, J.; Bijleveld, E.; Jostmann, N. B.; Holland, R. W.

10.1101/379214 — neuroscience — Posted on 2018-07-30

190 Probing the limits of activity-silent non-conscious working memory

Trübutschek, D.; Marti, S.; Ueberschär, H.; Dehaene, S.

10.1101/379537 — neuroscience — Posted on 2018-07-30

191 Polymer Simulations of Heteromorphic Chromatin Predict the 3-D Folding of Complex Genomic Loci

Buckle, A.; Brackley, C. A.; Boyle, S.; Marenduzzo, D.; Gilbert, N.

10.1101/380196 — molecular biology — Posted on 2018-07-30

192 Association Between Rare Copy Number Variation and Response to Social Skills Training in Autism Spectrum Disorder

Tammimies, K.; Li, D.; Rabkina, I.; Stamouli, S.; Becker, M.; Nicolaou, V.; Berggren, S.; Coco, C.; Falkmer, T.; Jonsson, U.; Choque-Olsson, N.; Bolte, S.

10.1101/380147 — genetics — Posted on 2018-07-30

193 Adaptive introgression: an untapped evolutionary mechanism for crop adaptation

Burgarella, C.; Barnaud, A.; Kane, N. A.; Jankowsky, F.; Scarcelli, N.; Billot, C.; Vigouroux, Y.; Berthouly-Salazar, C.

10.1101/379966 — evolutionary biology — Posted on 2018-07-30

194 Responses of ground-dwelling spider assemblages to changes in vegetation from wet oligotrophic habitats of Western France

Lafage, D.; Djoudi, E. A.; Perrin, G.; Gallet, S.; Petillon, J.

10.1101/380212 — ecology — Posted on 2018-07-30

195 Management performance mapping: the value of information for regional prioritization of project interventions

Buddenhagen, C.; Andrade Piedra, J.; Forbes, G.; Kromann, P.; Navarrete, I.; Thomas-Sharma, S.; Xing, Y.; Garrett, K.

10.1101/380352 — ecology — Posted on 2018-07-30

196 Decreased snow cover stimulates under ice primary producers, but impairs methanotrophic capacity

Garcia, S. L.; Szekely, A. J.; Bergvall, C.; Schattenhofer, M.; Peura, S.

10.1101/380170 — ecology — Posted on 2018-07-30

197 A centrosome calcium signal is essential for mammalian cell mitosis

Helassa, N.; Nugues, C.; Burgoyne, R. D.; Haynes, L. P.

10.1101/379792 — cell biology — Posted on 2018-07-30

198 Osteoblastic PLEKHO1 contributes to joint inflammation in rheumatoid arthritis

He, X.; Liu, J.; Liang, C.; Shaikh, A. B.; Zheng, K.; Dang, L.; Guo, B.; Li, D.; Lu, C.; Guo, Q.; Fan, D.; Bian, Y.; Feng, H.; Xiao, L.; Pan, X.; Xiao, C.; Zhang, B.-T.; Zhang, G.; Lu, A.

10.1101/380303 — cell biology — Posted on 2018-07-30

199 Molecular interaction and transport limitation in macromolecular binding to surfaces.

Hemker, P. W.; Miszta, A.; Hemker, C.; Hermens, W.

10.1101/380337 — biophysics — Posted on 2018-07-30

200 Hybrid sequence-structure based HMM models leverage theidentification of homologous proteins: the example of class II fusion

Tetley, R.; Guardado-Calvo, P.; Fedry, J.; Rey, F.; Cazals, F.

10.1101/379800 — bioinformatics — Posted on 2018-07-30

201 Negative memory engrams in the hippocampus enhance the susceptibility to chronic social defeat stress

Zhang, T. R.; Larosa, A.; Di Raddo, M.-E.; Wong, V.; Wong, A. S.; Wong, T. P.

10.1101/379669 — animal behavior and cognition — Posted on 2018-07-30

202 Perceptual grouping in the cocktail party: contributions of voice-feature continuity

Kreitewolf, J.; Mathias, S. R.; Trapeau, R.; Obleser, J.; Schönwiesner, M.

10.1101/379545 — neuroscience — Posted on 2018-07-30

203 Explaining Visual Cortex Phenomena using Recursive Cortical Network

Lavin, A.; Guntupalli, J. S.; Lazaro-Gredilla, M.; Lehrach, W.; George, D.

10.1101/380048 — neuroscience — Posted on 2018-07-30

204 Predicting Individual Psychotic Experiences on a Continuum Using Machine Learning

Taylor, J. A.; Larsen, K. M.; Dzafic, I.; Garrido, M. I.

10.1101/380162 — neuroscience — Posted on 2018-07-30

205 Weak electric fields promote resonance in neuronal spiking activity: analytical results from two-compartment cell and network models

Ladenbauer, J.; Obermayer, K.

10.1101/379560 — neuroscience — Posted on 2018-07-30

206 Mitochondrial acetyl-CoA reversibly regulates locus-specific histone acetylation and gene expression

Lozoya, O.; Wang, T.; Grenet, D.; Wolfgang, T.; Sobhany, M.; Ganini da Silva, D.; Riadi, G.; Chandel, N. S.; Woychik, R.; Santos, J.

10.1101/380261 — genomics — Posted on 2018-07-30

207 Need for high-resolution Genetic Analysis in iPSC: Results and Lessons from the ForIPS Consortium

Popp, B.; Krumbiegel, M.; Grosch, J.; Sommer, A.; Uebe, S.; Kohl, Z.; Ploetz, S.; Farrell, M.; Trautmann, U.; Kraus, C.; Ekici, A. B.; Asadollahi, R.; Regensburger, M.; Guenther, K.; Rauch, A.; Edenhofer, F.; Winkler, J.; Winner, B.; Reis, A.

10.1101/379818 — genomics — Posted on 2018-07-30

208 An amphipathic helix enables septins to sense micron-scale membrane curvature

Cannon, K. S.; Woods, B. L.; Crutchley, J. M.; Gladfelter, A. S.

10.1101/379982 — cell biology — Posted on 2018-07-30

209 Mice developing mammary tumors evolve T cell sequences shared with human breast cancer patients

Gordin, M.; Philip, H.; Zilberberg, A.; Cohen Gidon, M.; Margalit, R.; Clouser, C.; Adams, K.; Vigneault, F.; R. Cohen, I.; Yaari, G.; Efroni, S.

10.1101/371260 — cancer biology — Posted on 2018-07-30

210 Magnetic Polymer Models for Epigenomic Organisation and Phase Separation

Coli, D.; Michieletto, D.; Marenduzzo, D.; Orlandini, E.

10.1101/379941 — biophysics — Posted on 2018-07-30

211 Tensor decomposition--based unsupervised feature extraction for integrated analysis of TCGA data on microRNA expression and promoter methylation of genes in ovarian cancer

Taguchi, Y.-h.; Ng, K.-L.

10.1101/380071 — bioinformatics — Posted on 2018-07-30

212 Mechanical Behavior Of Axonal Microtubules; The Effect Of Fluid On The Rupture Of Axonal Microtubules

Manuchehrfar, F.; Shamloo, A.

10.1101/378455 — bioengineering — Posted on 2018-07-30

213 An actuated neural probe architecture for reducing gliosis-induced recording degradation

Massey, T. L.; Kuo, L. S.; Fan, J. L.; Maharbiz, M. M.

10.1101/380006 — bioengineering — Posted on 2018-07-30

214 Phosphatidylinositol 4,5-Bisphosphate (PIP2) Regulate KCNQ3 K+ Channels Via Multiple Sites Of Action

Choveau, F.; De La Rosa, V.; Bierbower, S. M.; Hernandez, C. Q.; Shapiro, M. S.

10.1101/380287 — neuroscience — Posted on 2018-07-30

215 Image content is more important than Bouma’s Law for scene metamers

Wallis, T. S. A.; Funke, C. M.; Ecker, A. S.; Gatys, L. A.; Wichmann, F. A.; Bethge, M.

10.1101/378521 — neuroscience — Posted on 2018-07-30

216 Damage-induced reactive oxygen species enable regenerative signalling by the rapid repositioning of Hedgehog expressing cells.

Roehl, H.; Romero, M. G.; McCathie, G.; Jankun, P.

10.1101/380378 — developmental biology — Posted on 2018-07-30

217 Divalent cation and chloride ion sites of chicken acid sensing ion channel 1a elucidated by x-ray crystallography

Yoder, N.; Gouaux, E.

10.1101/379685 — biophysics — Posted on 2018-07-30

218 Mutation of sequences flanking and separating transcription factor binding sites in a Drosophila enhancer significantly alter its output

Li, X.-Y.; Eisen, M.

10.1101/379974 — developmental biology — Posted on 2018-07-30

219 Activin signaling informs the graded pattern of terminal mitosis and hair cell differentiation in the mammalian cochlea

Prajapati-DiNubila, M.; Benito-Gonzalez, A.; Golden, E. J.; Zhang, S.; Doetzlhofer, A.

10.1101/380055 — developmental biology — Posted on 2018-07-30

220 Topological segregation of functional networks increases in developing brains

He, W.; Sowman, P. F.; Brock, J.; Etchell, A. C.; Stam, C. J.; Hillebrand, A.

10.1101/378562 — neuroscience — Posted on 2018-07-29

221 Experimental demonstration that screening can enable the environmental recruitment of a defensive microbiome

Innocent, T.; Holmes, N.; Al Bassam, M.; Schiott, M.; Scheuring, I.; Wilkinson, B.; Hutchings, M. I.; Boomsma, J. J.; Yu, D.

10.1101/375634 — microbiology — Posted on 2018-07-29

222 The structural basis for activation of voltage sensor domains in an ion channel TPC1

Kintzer, A. F.; Green, E.; Dominik, P.; Bridges, M.; Armache, J.-p.; Deneka, D.; Kim, S.; Hubbell, W.; Kossiakoff, A.; Cheng, Y.; Stroud, R.

10.1101/373860 — biophysics — Posted on 2018-07-29

223 A theoretical approach for discriminating accurately intrinsic pattern of biological systems and recognizing three kind soybean proteomes

Zou, H.

10.1101/379701 — bioinformatics — Posted on 2018-07-29

224 The necessary component of regulatory interactions: identification and characterization of putative regulatory motifs. Case study on the control of seminal fluid proteins through regulatory hubs in D. melanogaster

Mohorianu, I.

10.1101/379610 — bioinformatics — Posted on 2018-07-29

225 Characterizing molecular flexibility by combining lRMSD measures

Cazals, F.; Tetley, R.

10.1101/379784 — bioinformatics — Posted on 2018-07-29

226 Maintaining gene expression levels by positive feedback in burst size in the presence of infinitesimal delay

Bokes, P.

10.1101/379602 — systems biology — Posted on 2018-07-29

227 RNA-Seq and Protein Mass Spectrometry in Microdissected Kidney Tubules Reveal Signaling Processes that Initiate Lithium-Induced Diabetes Insipidus

Sung, C.-C.; Chen, L.; Limbutara, K.; Jung, H. J.; Gilmer, G. G.; Yang, C.-R.; Khositseth, S.; Lin, S.-H.; Chou, C.; Knepper, M. A.

10.1101/379875 — systems biology — Posted on 2018-07-29

228 RNAlater and flash freezing storage methods nonrandomly influence observed gene expression in RNAseq experiments

Passow, C. N.; Kono, T. J. Y.; Stahl, B. A.; Jaggard, J. B.; Keene, A. C.; McGaugh, S. E.

10.1101/379834 — genomics — Posted on 2018-07-29

229 Replicability of introgression under linked, polygenic selection

Sachdeva, H.; Barton, N. H.

10.1101/379578 — evolutionary biology — Posted on 2018-07-29

230 A Fast Likelihood Method to Reconstruct and Visualize Ancestral Scenarios

Ishikawa, S.; Zhukova, A.; Iwasaki, W.; Gascuel, O.

10.1101/379529 — evolutionary biology — Posted on 2018-07-29

231 Non-heritable variation in individual fitness adds stability to neutral theories in ecology and evolution

Gomes, G.; King, J.; Nunes, A.; Colegrave, N.; Hoffmann, A.

10.1101/379776 — ecology — Posted on 2018-07-29

232 Multiscale analysis of structurally conserved motifs

Cazals, F.; Tetley, R.

10.1101/379768 — bioinformatics — Posted on 2018-07-29

233 Expression of the Phosphatase Ppef2 Controls Survival and Function of CD8+ Dendritic Cells

Zwick, M.; Ulas, T.; Cho, Y.-L.; Ried, C.; Grosse, L.; Simon, C.; Bernhard, C.; Busch, D. H.; Schulze, J. L.; Buchholz, V.; Stutte, S.; Brocker, T.

10.1101/374652 — immunology — Posted on 2018-07-29

234 A comparative study of machine learning algorithms in predicting severe complication after bariatric surgery

Cao, Y.; Fang, X.; Ottosson, J.; Naslund, E.; Stenberg, E.

10.1101/376038 — epidemiology — Posted on 2018-07-29

235 Genome-scale sequence disruption following biolistic transformation in rice and maize

Liu, J.; Nannas, N. J.; Fu, F.-f.; Shi, J.; Aspinwall, B.; Parrott, W. A.; Dawe, R. K.

10.1101/379644 — plant biology — Posted on 2018-07-29

236 Loss of function mutations in epaR confer resistance to phage NPV1 infection in Enterococcus faecalis OG1RF

Ho, K.; Huo, W.; Pas, S.; Dao, R.; Palmer, K.

10.1101/301929 — microbiology — Posted on 2018-07-29

237 Human posterior parietal cortex responds to visual stimuli as early as peristriate occipital cortex

Regev, T. I.; Winawer, J.; Gerber, E. M.; Knight, R. T.; Deouell, L. Y.

10.1101/377887 — neuroscience — Posted on 2018-07-29

238 Gene expression profiling of The Cancer Genome Atlas supports an inverse association between body mass index (BMI) and major oesophageal tumour subtypes

Seim, I.; Jeffery, P. L.; Chopin, L. K.

10.1101/378778 — genetics — Posted on 2018-07-29

239 Characterizing animal movement patterns across different scales and habitats using information theory

Owoeye, K. A.; Musolesi, M.; Hailes, S.

10.1101/311241 — ecology — Posted on 2018-07-29

240 A Freeloader?: The Highly Eroded Yet Large Genome of the Serratia symbiotica symbiont of Cinara strobi

Manzano-Marin, A.; Coeur d'acier, A.; Clamens, A.-L.; Orvain, C.; Cruaud, C.; Barbe, V.; Jousselin, E.

10.1101/305458 — genomics — Posted on 2018-07-29

241 Primary neurons can enter M-phase

Walton, C. C.; Zhang, W.; Patino-Parrado, I.; Barrio-Alonso, E.; Garrido, J.-J.; Frade, J. M.

10.1101/288589 — cell biology — Posted on 2018-07-29

242 The critical role of ASD-related gene CNTNAP3 in regulating synaptic development and social behavior in mice

Tong, D.; Chen, R.; Lu, Y.; Li, W.; Zhang, Y.; Lin, J.; He, L.; Dang, T.; Shan, S.; Xu, X.; Zhang, Y.; Zhang, C.; Du, Y.; Zhou, W.-H.; Wang, X.; Qiu, Z.

10.1101/260083 — neuroscience — Posted on 2018-07-29

243 Common Garlic (Allium sativum L.) has Potent Anti-Bacillus anthracis Activity

Kaur, R.; Tiwari, A.; Manish, M.; Maurya, I. K.; Bhatnagar, R.; Singh, S.

10.1101/162214 — microbiology — Posted on 2018-07-29

244 Inhibition of Early Response Genes Prevents Changes in Global Joint Metabolomic Profiles in Mouse Post-Traumatic Osteoarthritis

Haudenschild, D. R.; Carlson, A. K.; Zignego, D. L.; Yik, J. H. N.; Hilmer, J. K.; June, R.

10.1101/379370 — pathology — Posted on 2018-07-29

245 Plasticity in Escherichia coli cell wall metabolism promotes fitness and mediates intrinsic antibiotic resistance across environmental conditions

Mueller, E. A.; Levin, P. A.

10.1101/379271 — microbiology — Posted on 2018-07-29

246 Discovery of a bacterial peptide as a modulator of GLP-1 and metabolic disease

Tomaro-Duchesneau, C.; LeValley, S. L.; Röth, D.; Sun, L.; Horrigan, F. T.; Kalkum, M.; Hyser, J. M.; Britton, R. A.

10.1101/379503 — microbiology — Posted on 2018-07-29

247 Migration rather than proliferation transcriptomic signatures are strongly associated with breast cancer patient survival

Nair, N. U.; Das, A.; Rogkoti, V.-M.; Fokkelman, M.; Marcotte, R.; Jong, C.; Lee, J. S.; Meilijson, I.; Hannenhalli, S.; Neel, B.; Water, B. v. d.; Devedec, S. E. L.; Ruppin, E.

10.1101/379123 — bioinformatics — Posted on 2018-07-29

248 Identifying Genes in Published Pathway Figure Images

Riutta, A.; Hanspers, K.; Pico, A. R.

10.1101/379446 — bioinformatics — Posted on 2018-07-29

249 Quantitative comparison of the anterior-posterior patterning system in the embryos of five Drosophila species

Wunderlich, Z.; Fowlkes, C. C.; Eckenrode, K. B.; Bragdon, M. D. J.; Abiri, A.; DePace, A. H.

10.1101/378430 — systems biology — Posted on 2018-07-29

250 The molecular signatures of compatible and incompatible pollination

Kodera, C.; Just, J.; Da Rocha, M.; Larrieu, A.; Riglet, L.; Legrand, J.; Rozier, F.; Gaude, T.; Fobis-Loisy, I.

10.1101/374843 — plant biology — Posted on 2018-07-29

251 Dietary long-chain omega-3 fatty acids are related to impulse control and anterior cingulate function in adolescents

Darcey, V. L.; McQuaid, G. A.; Fishbein, D. H.; VanMeter, J. W.

10.1101/379263 — neuroscience — Posted on 2018-07-29

252 Analysis of the impact of molecular motions on the efficiency of XL-MS and the distance restraints in hybrid structural biology

Svetlov, V.; Nudler, E.

10.1101/379289 — molecular biology — Posted on 2018-07-29

253 Chromulinavorax destructans, a pathogenic TM6 bacterium with an unusual replication strategy targeting protist mitochondrion

Deeg, C. M.; Zimmer, M. M.; George, E.; Husnik, F.; Keeling, P. J.; Suttle, C. A.

10.1101/379388 — microbiology — Posted on 2018-07-29

254 High efficiency genomic editing in Epstein-Barr virus-transformed lymphoblastoid B cells.

Johnston, A. D.; Simoes-Pires, C.; Suzuki, M.; Greally, J.

10.1101/379461 — genomics — Posted on 2018-07-29

255 Two Novel α-L-Arabinofuranosidases from Bifidobacterium longum subsp. longum belonging to Glycoside Hydrolase Family 43 Cooperatively Degrade Arabinan

Ashida, H.; Komeno, M.; Hayamizu, H.; Fujita, K.

10.1101/379495 — biochemistry — Posted on 2018-07-29

256 Gene cluster conservation identifies melanin and perylenequinone biosynthesis pathways in multiple plant pathogenic fungi

Ebert, M.; Spanner, R.; de Jonge, R.; Smith, D.; Holthusen, J.; Secor, G.; Thomma, B.; Bolton, M.

10.1101/379305 — microbiology — Posted on 2018-07-29

257 De novo mutations in the GTP/GDP-binding region of RALA, a RAS-like small GTPase, cause intellectual disability and developmental delay

Hiatt, S.; Neu, M. B.; Ramaker, R. C.; Hardigan, A. A.; Prokop, J. W.; Hancarova, M.; Prchalova, D.; Havlovicova, M.; Prchal, J.; Stranecky, V.; Yim, D. K.; Powis, Z.; Keren, B.; Nava, C.; Mignot, C.; Rio, M.; Revah-Politi, A.; Hemati, P.; Stong, N.; Iglesias, A. D.; Suchy, S. F.; Willaert, R.; Wentzensen, I. M.; Wheeler, P. G.; Brick, L.; Kozenko, M.; Hurst, A. C.; Wheless, J. W.; Lacassie, Y.; Sedlacek, Z.; Myers, R. M.; Barsh, G. S.; Cooper, G. M.

10.1101/378349 — genetics — Posted on 2018-07-29

258 MOVIE: Multi-Omics VIsualization of Estimated contributions

McCabe, S. D.; Lin, D.-Y.; Love, M. I.

10.1101/379115 — bioinformatics — Posted on 2018-07-29

259 The Nucleome of Developing Murine Rod Photoreceptors

Al Diri, I.; Valentine, M.; Xu, B.; Putnam, D.; Griffiths, L.; Lupo, M.; Norrie, J.; Zhang, J.; Johnson, D.; Easton, J.; Shirinifard, A.; Shao, Y.; Honnell, V.; Frase, S.; Miller, S.; Stewart, V.; Chen, X.; Dyer, M.

10.1101/369702 — neuroscience — Posted on 2018-07-29

260 MYCN Amplification and ATRX Mutations are Incompatible in Neuroblastoma

Zeineldin, M.; Federico, S.; Chen, X.; Fan, Y.; Xu, B.; Stewart, E.; Zhou, X.; Jeon, J.; Griffiths, L.; Easton, J.; Mulder, H.; Yergeau, D.; Liu, Y.; Wu, J.; Van Ryn, C.; Naranjo, A.; Hogarty, M.; Kaminski, M.; Valentine, M.; Miller, S.; Pappo, A.; Zhang, J.; Clay, M.; Bahrami, A.; Lee, S.; Shelat, A.; George, R.; Mardis, E.; Wilson, R.; Downing, J.; Dyer, M.

10.1101/379636 — cancer biology — Posted on 2018-07-29

261 Monkey Features Location Identification Using Convolutional Neural Networks

Labuguen, R.; Gaurav, V.; Negrete Blanco, S.; Matsumoto, J.; Inoue, K.; Shibata, T.

10.1101/377895 — animal behavior and cognition — Posted on 2018-07-29

262 Deep Bidirectional Recurrent Neural Networks as End-To-End Models for Smoking Status Extraction from Clinical Notes in Spanish.

Esteban, S.; Rodriguez Tablado, M.; Peper, F. E.; Terrasa, S. A.; Kopitowski, K. S.

10.1101/320846 — bioinformatics — Posted on 2018-07-28

263 Walking along chromosomes with super-resolution imaging, contact maps, and integrative modeling

Nir, G.; Farabella, I.; Perez Estrada, C.; Ebeling, C. G.; Beliveau, B. J.; Sasaki, H. M.; Lee, S. H.; Nguyen, S. C.; McCole, R. B.; Chattoraj, S.; Erceg, J.; AlHaj Abed, J.; Martins, N. M. C.; Nguyen, H. Q.; Hannan, M. A.; Russell, S.; Durand, N. C.; Rao, S. S. P.; Kishi, J. Y.; Soler-Vila, P.; Di Pierro, M.; Onuchic, J. N.; Callahan, S.; Schreiner, J.; Stuckey, J.; Yin, P.; Lieberman Aiden, E.; Marti-Renom, M. A.; Wu, C.- t.

10.1101/374058 — genetics — Posted on 2018-07-28

264 A unifying model to predict multiple object orienting behaviors in tethered flies

Poehlmann, A.; Soselisa, S.; Fenk, L. M.; Straw, A. D.

10.1101/379651 — neuroscience — Posted on 2018-07-28

265 microRNA regulation of persistent stress-enhanced memory

Sillivan, S. E.; Jamieson, S.; de Nijs, L.; Jones, M.; Snijders, C.; Klengel, T.; Joseph, N. F.; Krauskopf, J.; Kleinjans, J.; Vinkers, C. H.; Boks, M. P.; Geuze, E.; Vermetten, E.; Ressler, K. J.; Rutten, B. P.; Rumbaugh, G.; Miller, C.

10.1101/379594 — neuroscience — Posted on 2018-07-28

266 Initial Characterization of the Two ClpP Paralogs of Chlamydia trachomatis Suggests Unique Functionality for Each

Wood, N. A.; Chung, K.; Rodrigues de Almeida, N.; Conda-Sheridan, M.; Fisher, D. J.; Ouellette, S. P.

10.1101/379487 — microbiology — Posted on 2018-07-28

267 Consistent pre-stimulus influences on auditory perception across the lifespan

McNair, S. W.; Kayser, S. J.; Kayser, C.

10.1101/378851 — neuroscience — Posted on 2018-07-28

268 Gene expression profiling of The Cancer Genome Atlas supports an inverse association between body mass index (BMI) and major oesophageal tumour subtypes

Seim, I.; Jeffery, P. L.; Chopin, L. K.

10.1101/378778 — genetics — Posted on 2018-07-28

269 Breaking the ladder: Evolution of the ventral nerve cord in Annelida

Helm, C.; Beckers, P.; Bartolomaeus, T.; Drukewitz, S. H.; Kourtesis, I.; Weigert, A.; Purschke, G.; Worsaae, K.; Struck, T. H.; Bleidorn, C.

10.1101/378661 — evolutionary biology — Posted on 2018-07-28

270 Climate, human influence, and the distribution limits of the invasive European earwig, Forficula auricularia, in Australia

Hill, M.; Binns, M.; Umina, P.; Hoffmann, A.; Macfadyen, S.

10.1101/378570 — ecology — Posted on 2018-07-28

271 Hitchhiking, collapse and contingency in phage infections of migrating bacterial populations

Ping, D.; Wang, T.; Fraebel, D. T.; Maslov, S.; Sneppen, K.; Kuehn, S.

10.1101/378596 — ecology — Posted on 2018-07-28

272 Extracting human data from published figures: implications for data science and bioethics

Cox, B. J.

10.1101/376848 — bioinformatics — Posted on 2018-07-28

273 A junction coverage compatibility score to quantify the reliability of transcript abundance estimates and annotation catalogs

Soneson, C.; Love, M. I.; Patro, R.; Hussain, S.; Malhotra, D.; Robinson, M. D.

10.1101/378539 — bioinformatics — Posted on 2018-07-28

274 Rosetta FunFolDes - a general framework for the computational design of functional proteins

Bonet, J.; Wehrle, S.; Schriever, K.; Yang, C.; Billet, A.; Sesterhenn, F.; Scheck, A.; Sverrisson, F.; Vollers, S.; Lourman, R.; Villard, M.; Rosset, S.; Correia, B. E.

10.1101/378976 — bioinformatics — Posted on 2018-07-28

275 3D-Printed Biodegradable Microswimmer for Drug Delivery and Targeted Cell Labeling

Ceylan, H.; Yasa, I. C.; Yasa, O.; Tabak, A. F.; Giltinan, J.; Sitti, M.

10.1101/379024 — bioengineering — Posted on 2018-07-28

276 Sleep/wake synchronization across latitude

Martin-Olalla, J. M.

10.1101/378737 — physiology — Posted on 2018-07-28

277 Transdiagnostic characterization of neuropsychiatric disorders by hyperexcitation-induced immaturity

Murano, T.; Hagihara, H.; Tajinda, K.; Matsumoto, M.; Miyakawa, T.

10.1101/376962 — neuroscience — Posted on 2018-07-28

278 Does Adaptive Protein Evolution Proceed by Large or Small Steps at the Amino Acid Level?

Bergman, J.; Eyre-Walker, A.

10.1101/379073 — evolutionary biology — Posted on 2018-07-28

279 A test of the general occurrence and predictive utility of isochronal, equiproportional, ‘variable proportional’, and ‘mixed’ development among arthropods

Quinn, B.

10.1101/379164 — developmental biology — Posted on 2018-07-28

280 SymSim: simulating multi-faceted variability in single cell RNA sequencing

Zhang, X.; Xu, C.; Yosef, N.

10.1101/378646 — bioinformatics — Posted on 2018-07-28

281 Quantitative evaluation of ontology design patterns for combining pathology and anatomy ontologies

Alghamdi, S. M.; Sundberg, B. A.; Sundberg, J. P.; Schofield, P. N.; Hoehndorf, R.

10.1101/378927 — bioinformatics — Posted on 2018-07-28

282 Songbird ventral basal ganglia sends performance error signals to dopaminergic midbrain

Chen, R.; Puzerey, P. A.; Roeser, A. C.; Riccelli, T. E.; Podury, A.; Maher, K.; Farhang, A.; Goldberg, J. H.

10.1101/346841 — neuroscience — Posted on 2018-07-28

283 Identification of a primitive intestinal transcription factor network shared between oesophageal adenocarcinoma and its pre-cancerous precursor state.

Rogerson, C.; Britton, E.; Withey, S.; Hanley, N.; Ang, Y.; Sharrocks, A. D.

10.1101/373068 — cancer biology — Posted on 2018-07-28

284 A Moonlighting Role for SPCA2 in E-cadherin Biogenesis and Suppression of Epithelial-Mesenchymal Transition

Dang, D. K.; Llongueras, J. P.; Prasad, H.; Ogunmola, I.; Makena, M. R.; Rao, R.

10.1101/379586 — cancer biology — Posted on 2018-07-28

285 Commonly-used FRET fluorophores promote collapse of an otherwise disordered protein.

Riback, J. A.; Bowman, M. A.; Zmyslowski, A. M.; Plaxco, K. W.; Clark, P. L.; Sosnick, T. R.

10.1101/376632 — biophysics — Posted on 2018-07-28

286 Integrative proteomics and bioinformatic prediction enable a high-confidence apicoplast proteome in malaria parasites

Boucher, M. J.; Ghosh, S.; Zhang, L.; Lal, A.; Jang, S. W.; Ju, A.; Zhang, S.; Wang, X.; Ralph, S. A.; Zou, J.; Elias, J. E.; Yeh, E.

10.1101/265967 — microbiology — Posted on 2018-07-28

287 Short-term insurance versus long-term bet-hedging strategies as adaptations to variable environments

Haaland, T. R.; Wright, J.; Tufto, J.; Ratikainen, I. I.

10.1101/378091 — evolutionary biology — Posted on 2018-07-28

288 Subunit exchange enhances information retention by CaMKII in dendritic spines

Singh, D.; Bhalla, U. S.

10.1101/372748 — neuroscience — Posted on 2018-07-28

289 Hotspot mutations and ColE1 plasmids contribute to the fitness of Salmonella Heidelberg in poultry litter

Oladeinde, A.; Cook, K.; Orlek, A.; Zock, G.; Herrington, K.; Cox, N.; Plumblee Lawrence, J.; Hall, C.

10.1101/312322 — ecology — Posted on 2018-07-28

290 Positional information encoded in the dynamic differences between neighbouring oscillators during vertebrate segmentation.

Boareto, M.; Tomka, T.; Iber, D.

10.1101/286328 — developmental biology — Posted on 2018-07-28

291 Analysis of Local Variability and Allostery in Macromolecular Assemblies using Cryo-EM and Focused Classification

Zhang, C.; Cantara, W.; Jeon, Y.; Musier-Forsyth, K.; Grigorieff, N.; Lyumkis, D.

10.1101/365940 — biophysics — Posted on 2018-07-28

292 Heterogeneous local dynamics revealed by classification analysis of spatially disaggregated time series data

Perkins, A.; Rodriguez-Barraquer, I.; Manore, C.; Siraj, A.; Espana, G.; Barker, C.; Johansson, M.; Reiner, R.

10.1101/276006 — epidemiology — Posted on 2018-07-28

293 Computationally Reconstructing Cotranscriptional RNA Folding Pathways from Experimental Data Reveals Rearrangement of Non-Native Folding Intermediates

Yu, A. M.; Gasper, P. M.; Strobel, E. J.; Watters, K. E.; Chen, A. A.; Lucks, J. B.

10.1101/379222 — biochemistry — Posted on 2018-07-28

294 A synthetic microbial loop for modelling heterotroph-phototroph metabolic interactions

Fondi, M.; Di Patti, F.

10.1101/379131 — systems biology — Posted on 2018-07-28

295 Spatial moment description of birth-death-movementprocesses incorporating the effects of crowding andobstacles

Surendran, A.; Plank, M.; Simpson, M. J.

10.1101/267708 — biophysics — Posted on 2018-07-28

296 TNF-α induces reactivation of human cytomegalovirus independently of myeloid cell differentiation following post-transcriptional establishment of latency

Forte, E.; Swaminathan, S.; Schroeder, M. W.; Kim, J. Y.; Terhune, S. S.; Hummel, M.

10.1101/298547 — microbiology — Posted on 2018-07-27

297 Comprehensive analysis of retinal development at single cell resolution identifies NFI factors as essential for mitotic exit and specification of late-born cells.

Clark, B.; Stein-O'Brien, G.; Shiau, F.; Cannon, G.; Davis, E.; Sherman, T.; Rajaii, F.; James-Esposito, R.; Gronostajski, R.; Fertig, E.; Goff, L.; Blackshaw, S.

10.1101/378950 — developmental biology — Posted on 2018-07-27

298 Chronic inflammatory pain drives alcohol drinking in a sex-dependent manner

Yu, W.; Hwa, L. S.; Makhijani, V. H.; Besheer, J.; Kash, T. L.

10.1101/379362 — animal behavior and cognition — Posted on 2018-07-27

299 Sex-specific memory deficits after subchronic immune challenge

Tchessalova, D.; Tronson, N. C.

10.1101/379339 — animal behavior and cognition — Posted on 2018-07-27

300 Prospects for enhancing leaf photosynthetic capacity by manipulating mesophyll cell morphology

Ren, T.; Weraduwage, S. M.; Sharkey, T. D.

10.1101/379065 — plant biology — Posted on 2018-07-27

301 Topological segregation of functional networks increases in developing brains

He, W.; Sowman, P. F.; Brock, J.; Etchell, A. C.; Stam, C. J.; Hillebrand, A.

10.1101/378562 — neuroscience — Posted on 2018-07-27

302 An Atlas of Human and Murine Genetic Influences on Osteoporosis

Morris, J. A.; Kemp, J. P.; Youlten, S. E.; Laurent, L.; Logan, J. G.; Chai, R.; Vulpescu, N. A.; Forgetta, V.; Kleinman, A.; Mohanty, S.; Sergio, C. M.; Quinn, J.; Nguyen-Yamamoto, L.; Luco, A.-L.; Vijay, J.; Simon, M.-M.; Pramatarova, A.; Medina-Gomez, C.; Trajanoska, K.; Ghirardello, E. J.; Butterfield, N. C.; Curry, K. F.; Leitch, V. D.; Sparkes, P. C.; Adoum, A.-T.; Mannan, N. S.; Komla-Ebri, D.; Pollard, A. S.; Dewhurst, H. F.; Hassell, T.; Beltejar, M.-J. G.; Adams, D. J.; Vaillancourt, S. M.; Kaptoge, S.; Baldock, P.; Cooper, C.; Reeve, J.; Ntzani, E.; Evangelou, E.; Ohlsson, C.; Karas

10.1101/338863 — genomics — Posted on 2018-07-27

303 Shortened lifespan and other age-related defects in bang sensitive mutants of Drosophila melanogaster

Reynolds, E. R.

10.1101/379321 — genetics — Posted on 2018-07-27

304 Neurons of the inferior olive respond to broad classes of sensory input while subject to homeostatic control

Ju, C.; Bosman, L. W.; Hoogland, T. M.; Velauthapillai, A.; Murugesan, P.; Warnaar, P.; Negrello, M.; De Zeeuw, C. I.

10.1101/379149 — neuroscience — Posted on 2018-07-27

305 Peptidoglycan precursor synthesis along the sidewall of pole-growing mycobacteria

Garcia-Heredia, A.; Pohane, A. A.; Melzer, E. S.; Carr, C. R.; Fiolek, T. J.; Rundell, S. R.; Lim, H. C.; Wagner, J.; Morita, Y. S.; Swarts, B. M.; Siegrist, M. S.

10.1101/292607 — microbiology — Posted on 2018-07-27

306 Targeting Wnt Signaling To Overcome PARP Inhibitor Resistance

Yamamoto, T. M.; McMellen, A.; Watson, Z. L.; Aguilera, J.; Sikora, M. J.; Ferguson, R.; Nurmemmedov, E.; Thakar, T.; George-Lucian, M.; Kim, H.; Cittelly, D. M.; Wilson, H.; Behbakht, K.; Bitler, B. G.

10.1101/378463 — cancer biology — Posted on 2018-07-27

307 Dynamic recovery from depression enables rate encoding in inhibitory synapses

Huang, S.; Bridi, M.; Kirkwood, A.

10.1101/379081 — neuroscience — Posted on 2018-07-27

308 Memory sequencing reveals heritable single cell gene expression programs associated with distinct cellular behaviors

Shaffer, S. M.; Emert, B. L.; Sizemore, A. E.; Gupte, R.; Torre, E.; Bassett, D. S.; Raj, A.

10.1101/379016 — systems biology — Posted on 2018-07-27

309 Structure-function analysis of 1-hydroxypioglitazone, a major in vivo metabolite of the PPARγ agonist pioglitazone

Mosure, S.; Shang, J.; Brust, R.; Zheng, J.; Griffin, P.; Kojetin, D.

10.1101/351346 — biochemistry — Posted on 2018-07-27

310 An synthetic microbial loop for modelling heterotroph-phototroph metabolic interactions

Fondi, M.; Di Patti, F.

10.1101/379131 — systems biology — Posted on 2018-07-27

311 Active intermixing of indirect and direct neurons builds the striatal mosaic

Tinterri, A.; Mendary, F.; Diana, M. A.; Lokmane, L.; Keita, M.; Coulpier, F.; Lemoine, S.; Mailhes, C.; Mathieu, B.; Marchan-Sala, P.; Campbell, K.; Gyory, I.; Grosschedl, R.; Popa, D.; Garel, S.

10.1101/378372 — neuroscience — Posted on 2018-07-27

312 A Mechanism for Synaptic Copy between Neural Circuits

Shao, Y.; Wang, B.; Sornborger, A.; Tao, L.

10.1101/351114 — neuroscience — Posted on 2018-07-27

313 Single-cell molecular connectomics of intracortically-projecting neurons

Klingler, E.; Prados, J.; Kebschull, J. M.; Dayer, A.; Zador, A. M.; Jabaudon, D.

10.1101/378760 — neuroscience — Posted on 2018-07-27

314 Mutations in ELAC2 associated with hypertrophic cardiomyopathy impair mitochondrial tRNA 3’-end processing

Saoura, M.; Powell, C. A.; Kopajtich, R.; Alahmad, A.; AL-Balool, H. H.; Albash, B.; Alfadhel, M.; Alston, C. L.; Bertini, E.; Bonnen, P.; Bratkovic, D.; Carrozzo, R.; Donati, M. A.; Di Nottia, M.; Ghezzi, D.; Goldstein, A.; Haan, E.; Horvath, R.; Hughes, J.; Invernizzi, F.; Lamantea, E.; Lucas, B.; Pinnock, K.-G.; Pujantell, M.; Rahman, S.; Rebelo-Guiomar, P.; Santra, S.; Verrigni, D.; McFarland, R.; Prokisch, H.; Taylor, R. W.; Levinger, L.; Minczuk, M.

10.1101/378448 — genetics — Posted on 2018-07-27

315 Stabilizing Obligatory Non-native Intermediates Along Co-transcriptional Folding Trajectories of SRP RNA Affects Cell Viability

Fukuda, S.; Yan, S.; Komi, Y.; Sun, M.; Gabizon, R.; Bustamante, C.

10.1101/378745 — biophysics — Posted on 2018-07-27

316 Using multiple measurements of tissue to estimate individual- and cell-type-specific gene expression via deconvolution

Wang, J.; Devlin, B.; Roeder, K.

10.1101/379099 — bioinformatics — Posted on 2018-07-27

317 Probing the Modularity of Megasynthases by Rational Engineering of a Fatty Acid Synthase (FAS) Type I

Rittner, A.; Paithankar, K. S.; Drexler, D.; Himmler, A.; Grininger, M.

10.1101/379156 — biochemistry — Posted on 2018-07-27

318 Proximal recolonization by self-renewing microglia re-establishes microglial homeostasis in the adult mouse brain

Zhan, L.; Krabbe, G.; Du, F.; Jones, I.; Reichert, M. C.; Telpoukhovskaia, M.; Kodama, L.; Wang, C.; Cho, S.-h.; Sayed, F.; Li, Y.; Le, D.; Zhou, Y.; Shen, Y.; West, B.; Gan, L.

10.1101/378547 — neuroscience — Posted on 2018-07-27

319 Medial prefrontal cortex population activity is plastic irrespective of learning

Singh, A.; Peyrache, A.; Humphries, M. D.

10.1101/027102 — neuroscience — Posted on 2018-07-27

320 Radial Glia cell infection by Toxoplasma gondii disrupts brain microvascular endothelial cell integrity

Adesse, D.; Marcos, A. C.; Siqueira, M.; Cascabulho, C. M.; Waghabi, M. C.; Barbosa, H. S.; Stipursky, J.

10.1101/378588 — neuroscience — Posted on 2018-07-27

321 Intragenus variation in a Chemokine Receptor Gene (CCR5) in Homo

Hoover, K. C.

10.1101/195081 — genetics — Posted on 2018-07-27

322 Prospects for enhancing leaf photosynthetic capacity by manipulating mesophyll cell morphology

Ren, T.; Weraduwage, S. M.; Sharkey, T. D.

10.1101/379065 — plant biology — Posted on 2018-07-27

323 Entorhinal cortex minimises uncertainty for optimal behaviour

Navarro Schroeder, T.; Towse, B. W.; Nau, M.; Burgess, N.; Barry, C.; Doeller, C. F.

10.1101/166306 — neuroscience — Posted on 2018-07-27

324 A Cytoplasmic GOLD Protein Controls Cell Polarity

Stefan, C. J.; Omnus, D. J.; Cadou, A.; Chung, G. H.; Bader, J. M.

10.1101/379057 — cell biology — Posted on 2018-07-27

325 A novel enhancer RNA, Hmrhl, positively regulates its host gene, phkb, in Chronic Myelogenous Leukemia

Fatima, R.; Choudhury, S. R.; Rajendran, D. T.; Bhaduri, U.; Rao, S. M. R.

10.1101/378984 — cancer biology — Posted on 2018-07-27

326 Cryptic Promoter Activation Drives POU5F1 (OCT4) Expression in Renal Cell Carcinoma

Siebenthall, K. T.; Miller, C. P.; Vierstra, J. D.; Mathieu, J.; Tretiakova, M.; Reynolds, A.; Sandstrom, R.; Rynes, E.; Neph, S. J.; Haugen, E.; Johnson, A.; Nelson, J.; Bates, D.; Diegel, M.; Dunn, D.; Frerker, M.; Buckley, M.; Kaul, R.; Zheng, Y.; Himmelfarb, J.; Ruohola-Baker, H.; Akilesh, S.

10.1101/379198 — cancer biology — Posted on 2018-07-27

327 Learning-based screening of hematologic disorders using quantitative phase imaging of individual red blood cells

Kim, G.; Jo, Y.; Cho, H.; Min, H.-s.; Park, Y.

10.1101/091983 — biophysics — Posted on 2018-07-27

328 Computer simulation of knotted proteins unfold and translocation through nano-pores

Shahzad, M. A.

10.1101/378901 — biophysics — Posted on 2018-07-27

329 The permeabilized SecY protein-translocation channel can serve as a nonspecific sugar transporter

Mei, S.; Xie, C.; Mi, H.; Xue, C.; Guo, Q.; Du, G.-Q.; Li, G.-B.; Li, C.-X.; Qu, Y.-N.; Xiong, M.-H.; Jiang, Y.; Tan, T.-W.; Yang, S.-T.; Fan, L.-H.

10.1101/378786 — bioengineering — Posted on 2018-07-27

330 Migration and Differentiation of Osteoclast Precursors under Gradient Fluid Shear Stress

Gao, Y.; Li, Y. T.; Sun, Q.; Ye, Y. C.; Guo, M. M.; Chen, B. Z.; Chen, J.; Huo, B.

10.1101/379032 — cell biology — Posted on 2018-07-27

331 AGO CLIP reveals an activated network for acute regulation of brain glutamate homeostasis after ischemic stroke

Kobayashi, M.; Benakis, C.; Anderson, C.; Moore, M. J.; Poon, C.; Uekawa, K.; Dyke, J. P.; Mele, A.; Fak, J. J.; Park, C. Y.; Zhou, P.; Anrather, J.; Iadecola, C.; Darnell, R. B.

10.1101/245928 — molecular biology — Posted on 2018-07-27

332 A mathematical approach to differentiate spontaneous and induced evolution to drug resistance during cancer treatment

Greene, J. M.; Gevertz, J. L.; Sontag, E. D.

10.1101/235150 — cancer biology — Posted on 2018-07-27

333 Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry

Pulit, S. L.; Stoneman, C.; Morris, A. P.; Wood, A. R.; Glastonbury, C. A.; Tyrrell, J.; Yengo, L.; Ferreira, T.; Marouli, E.; Ji, Y.; Yang, J.; Jones, S.; Beaumont, R.; Croteau-Chonka, D. C.; Winkler, T. W.; GIANT Consortium, ; Hattersley, A. T.; Loos, R. J. F.; Hirschhorn, J. N.; Visscher, P. M.; Frayling, T. M.; Yaghootkar, H.; Lindgren, C. M.

10.1101/304030 — genetics — Posted on 2018-07-27

334 Telomeres as integrative markers of exposure to stress and adversity: A systematic review and meta-analysis

Pepper, G. V.; Bateson, M.; Nettle, D.

10.1101/320150 — epidemiology — Posted on 2018-07-27

335 Re-annotated Nicotiana benthamiana gene models for enhanced proteomics and reverse genetics

Kourelis, J.; Kaschani, F.; Grosse-Holz, F. M.; Homma, F.; Kaiser, M.; van der Hoorn, R. A. L.

10.1101/373506 — plant biology — Posted on 2018-07-27

336 Convergent evolution of psilocybin biosynthesis by psychedelic mushrooms

Awan, A. R.; Winter, J. M.; Turner, D.; Shaw, W. M.; Suz, L. M.; Bradshaw, A. J.; Ellis, T.; Dentinger, B.

10.1101/374199 — evolutionary biology — Posted on 2018-07-27

337 Mechanisms of Kinesin-1 activation by Ensconsin/MAP7 in vivo

Metivier, M.; Monroy, B.; Gallaud, E.; Caous, R.; Pascal, A.; Richard-Parpaillon, L.; Guichet, A.; Ori-McKenney, K.; Giet, R.

10.1101/325035 — cell biology — Posted on 2018-07-27

338 Flux, toxicity and protein expression costs shape genetic interaction in a metabolic pathway

Kemble, H. E.; Eisenhauer, C.; Couce, A.; Chapron, A.; Magnan, M.; Gautier, G.; Le Nagard, H.; Nghe, P.; Tenaillon, O.

10.1101/362327 — genetics — Posted on 2018-07-27

339 Targeting a Therapy-Resistant Cancer Cell State Using Masked Electrophiles as GPX4 Inhibitors

Eaton, J. K.; Furst, L.; Ruberto, R. A.; Moosmayer, D.; Hillig, R. C.; Hilpmann, A.; Zimmermann, K.; Ryan, M. J.; Niehues, M.; Badock, V.; Kramm, A.; Chen, S.; Clemons, P. A.; Gradl, S.; Montagnon, C.; Lazarski, K. E.; Christian, S.; Bajrami, B.; Neuhaus, R.; Eheim, A. L.; Viswanathan, V. S.; Schreiber, S. L.

10.1101/376764 — biochemistry — Posted on 2018-07-27

340 Molecular dissection of early defense signaling underlying volatile-mediated defense priming and herbivore resistance in rice

Ye, M.; Glauser, G.; Lou, Y.; Erb, M.; Hu, L.

10.1101/378752 — plant biology — Posted on 2018-07-27

341 A novel maize gene, glossy6 involved in epicuticular wax deposition and drought tolerance

Li, L.; Du, Y.; He, C.; Dietrich, C. R.; Li, J.; Ma, X.; Wang, R.; Liu, Q.; Liu, S.; Wang, G.; Schnable, P. S.; Zheng, J.

10.1101/378687 — plant biology — Posted on 2018-07-27

342 How do alterations in root cap structure and integrity impact root responses to an increase in medium strength?

Roue, J.; Chauvet, H.; Badel, E.; Bizet, F.; Moulia, B.; Legue, V.

10.1101/378828 — plant biology — Posted on 2018-07-27

343 Environment-driven genomic and trait divergence in a neotropical mangrove highlight differential sensitivities to climate change

Cruz, M. V.; Mori, G. M.; Müller, C. S.; Silva, C. C.; Oh, D.-H.; Dassanayake, M.; Zucchi, M. I.; Oliveira, R. S.; de Souza, A.

10.1101/378612 — plant biology — Posted on 2018-07-27

344 Meiotic Double-Strand Break Proteins Influence Repair Pathway Utilization

Yanowitz, J. L.; Macaisne, N.; Kessler, Z.

10.1101/376582 — genetics — Posted on 2018-07-27

345 A subfunctionalization epistasis model to evaluate homeologous gene interactions in allopolyploid wheat

Santantonio, N.; Jannink, J.-L.; Sorrells, M.

10.1101/376731 — genetics — Posted on 2018-07-27

346 Prediction of subgenome additive and interaction effects in allohexaploid wheat

Santantonio, N.; Jannink, J.-L.; Sorrells, M. E.

10.1101/373605 — genetics — Posted on 2018-07-27

347 A low resolution epistasis mapping approach to identify chromosome arm interactions in allohexaploid wheat

Santantonio, N.; Jannink, J.-L.; Sorrells, M. E.

10.1101/377713 — genetics — Posted on 2018-07-27

348 A comparative study of machine learning algorithms in predicting severe complication after bariatric surgery

Cao, Y.; Fang, X.; Ottosson, J.; Näslund, E.; Stenberg, E.

10.1101/376038 — epidemiology — Posted on 2018-07-27

349 A computational observer model of spatial contrast sensitivity: Effects of wavefront-based optics, cone mosaic structure, and inference engine

Cottaris, N.; Jiang, H.; Ding, X.; Wandell, B.; Brainard, D. H.

10.1101/378323 — neuroscience — Posted on 2018-07-27

350 Haplotype-resolved and integrated genome analysis of ENCODE cell line HepG2

Zhou, B.; Ho, S. S.; Greer, S. U.; Spies, N.; Bell, J. M.; Zhang, X.; Zhu, X.; Arthur, J. G.; Byeon, S.; Pattni, R.; Saha, I.; Song, G.; Ji, H. P.; Perrin, D.; Wong, W. H.; Abyzov, A.; Urban, A. E.

10.1101/378497 — genomics — Posted on 2018-07-27

351 COMPASS: An Open-Source, General-Purpose Software Toolkit for Computational Psychiatry

Yousefi, A.; Paulk, A. C.; Basu, I.; Dougherty, D. D.; Eskandar, E. N.; Eden, U. T.; Widge, A. S.

10.1101/377556 — bioengineering — Posted on 2018-07-27

352 Social information impairs reward learning in depressive subjects: behavioral and computational characterization

Safra, L.; Chevallier, C.; Palminteri, S.

10.1101/378281 — neuroscience — Posted on 2018-07-27

353 Disentangling the Role of Face Typicality and Affect in Emotional Face Processing: Self-reported and Electrophysiological Evidence

Pereira, M. R.; Paiva, T. O.; Barbosa, F.; Almeida, P. R.; Costa Martins, E. C.; Baldeweg, T.; de Haan, M.; Ferreira-Santos, F.

10.1101/378224 — neuroscience — Posted on 2018-07-27

354 The role of rare copy number variants in depression

Kendall, K. M.; Rees, E.; Bracher-Smith, M.; Riglin, L.; Zammit, S.; O'Donovan, M. C.; Owen, M. J.; Jones, I.; Kirov, G.; Walters, J. T.

10.1101/378307 — neuroscience — Posted on 2018-07-27

355 Uninterpretable interactions: epistasis as uncertainty

Sailer, Z. R.; Harms, M. J.

10.1101/378489 — genetics — Posted on 2018-07-27

356 Monarch butterfly and milkweed declines substantially predate the use of genetically modified crops

Boyle, J. H.; Dalgleish, H. J.; Puzey, J.

10.1101/378299 — ecology — Posted on 2018-07-27

357 Identifying alternative splicing isoforms in the human proteome with small proteotranscriptomic databases

Lau, E.; Lam, M. P. Y.

10.1101/372995 — bioinformatics — Posted on 2018-07-27

358 Mobility in Osteogenesis Imperfecta: A Multicenter North American Study

Kruger, K. M.; Caudill, A.; Rodriguez Celin, M.; Nagamani, S. C.; Shapiro, J. R.; Steiner, R. D.; Bober, M. B.; Hart, T.; Cuthbertson, D.; Krischer, J.; Byers, P.; Durigova, M.; Glorieux, F.; Rauch, F.; Sutton, V. R.; Lee, B.; Rush, E. T.; Smith, P. A.; Harris, G. F.

10.1101/378190 — bioengineering — Posted on 2018-07-27

359 Identifying Gait Phases from Joint Kinematics during Walking with Switched Linear Dynamical Systems

Drnach, L.; Essa, I.; Ting, L. H.

10.1101/378380 — bioengineering — Posted on 2018-07-27

360 Sagittal Subtalar and Talocrural Joint Assessment Between Barefoot and Shod Walking: A Fluoroscopic Study

McHenry, B. D.; Kruger, K. M.; Exton, E. L.; Tarima, S.; Harris, G. F.

10.1101/378216 — bioengineering — Posted on 2018-07-27

361 Microbial composition of enigmatic bird parasites: Wolbachia and Spiroplasma are the most important bacterial associates of quill mites (Acari:Syringophilidae)

Glowska, E.; Filutowska, Z. K.; Dabert, M.; Gerth, M.

10.1101/377218 — evolutionary biology — Posted on 2018-07-27

362 Overlap graph-based generation of haplotigs for diploids and polyploids

Baaijens, J.; Schoenhuth, A.

10.1101/378356 — bioinformatics — Posted on 2018-07-27

363 WEScover: whole exome sequencing vs. gene panel testing

Alvarez, W. J.; Lee, I.-H.; Hernandez-Ferrer, C.; Negron La Rosa, J.; Mandl, K.; Kong, S. W.

10.1101/367607 — bioinformatics — Posted on 2018-07-27

364 Step-wise evolution of temperature-mediated phenotypic plasticity in eyespot size across nymphalid butterflies

Bhardwaj, S.; Jolander, L. S. H.; Wenk, M. R.; Oliver, J. C.; Nijhout, H. F.; Monteiro, A.

10.1101/378836 — evolutionary biology — Posted on 2018-07-27

365 Electrophysiological characterization and MCH/orexin neuronal distribution in the lateral hypothalamus of naked mole-rats (Heterocephalus glaber)

Husson, Z.; Apergis-Schoute, J.; Smith, E.

10.1101/299818 — neuroscience — Posted on 2018-07-27

366 Infectious bursal disease virus suppresses H9N2 avian influenza viral shedding in broiler chickens

Ranjbar, V. R.; Mohammadi, A.; Dadras, H.; Bidadkosh, A.

10.1101/378703 — microbiology — Posted on 2018-07-27

367 Out of Africa by spontaneous migration waves

Bons, P. D.; Bauer, C. C.; Bocherens, H.; de Riese, T.; Drucker, D. G.; Francken, M.; Menendez, L.; Uhl, A.; van Milligen, B. P.; Wissing, C.

10.1101/378695 — evolutionary biology — Posted on 2018-07-27

368 Thrombocyte inhibition restores protective immunity to mycobacterial infection

Hortle, E.; Johnson, K. E.; Johansen, M. D.; Nguyen, T.; Shavit, J. A.; Britton, W. J.; Tobin, D. M.; Oehlers, S. H.

10.1101/338111 — immunology — Posted on 2018-07-27

369 Discovery of biased orientation of human DNA motif sequences affecting enhancer-promoter interactions and transcription of genes

Osato, N.

10.1101/290825 — bioinformatics — Posted on 2018-07-27

370 Convergent evolution of effector protease recognition by Arabidopsis and barley

Carter, M. E.; Helm, M.; Chapman, A.; Wan, E.; Restrepo Sierra, A. M.; Innes, R. W.; Bogdanove, A. J.; Wise, R. P.

10.1101/374264 — plant biology — Posted on 2018-07-26

371 Massive single-cell RNA-seq analysis and imputation via deep learning

Deng, Y.; Bao, F.; Dai, Q.; Wu, L.; Altschuler, S.

10.1101/315556 — bioinformatics — Posted on 2018-07-26

372 A draft single-cell atlas of human glioblastoma reveals a single axis of phenotype in tumor-propagating cells.

Muller, S.; Di Lullo, E.; Bhaduri, A.; Alvarado, B.; Yagnik, G.; Kohanbash, G.; Aghi, M.; Diaz, A.

10.1101/377606 — cancer biology — Posted on 2018-07-26

373 Tiling light sheet selective plane illumination microscopy using discontinuous light sheets

Gao, L.

10.1101/378232 — biophysics — Posted on 2018-07-26

374 LOPIT-DC: A simpler approach to high-resolution spatial proteomics

Geladaki, A.; Kocevar Britovsek, N.; Breckels, L. M.; Smith, T. S.; Mulvey, C. M.; Crook, O. M.; Gatto, L.; Lilley, K. S.

10.1101/378364 — biochemistry — Posted on 2018-07-26

375 Lamin A/C controls nuclear matrin-3 levels and localization, but not alternative splicing of cassette exons

Rajgor, D.; Gooding, C.; Hayward, R.; Coelho, M. B.; Smith, C. W.; Shanahan, C. M.

10.1101/378240 — cell biology — Posted on 2018-07-26

376 Salinity shock in Jatropha curcas leaves is more pronounced during recovery than during stress time

Silva-Santos, L.; Corte-Real, N.; Dias-Pereira, J.; Figueiredo, R. C. B. Q.; Endres, L.; Pompelli, M. F.

10.1101/378208 — plant biology — Posted on 2018-07-26

377 Discovering epistatic feature interactions from neural network models of regulatory DNA sequences

Greenside, P. G.; Shimko, T.; Fordyce, P.; Kundaje, A.

10.1101/302711 — bioinformatics — Posted on 2018-07-26

378 Acetic acid activates distinct taste pathways in Drosophila to elicit opposing, state-dependent feeding responses

Devineni, A. V.; Sun, B.; Zhukovskaya, A.; Axel, R.

10.1101/378414 — neuroscience — Posted on 2018-07-26

379 Sex differences in hippocampal cytokines after systemic immune challenge

Speirs, I. C.; Tronson, N. C.

10.1101/378257 — neuroscience — Posted on 2018-07-26

380 Multiple Mechanisms Inactivate the LIN-41 RNA-Binding Protein to Ensure A Robust Oocyte-to-Embryo Transition in Caenorhabditis elegans

Greenstein, D. I.; Spike, C.; Huelgas-Morales, G.; Tsukamoto, T.

10.1101/378398 — developmental biology — Posted on 2018-07-26

381 Tbx1 and Foxi3 genetically interact in the third pharyngeal pouch endoderm required for thymus and parathyroid development

Hasten, E.; MORROW, B. E.

10.1101/378182 — developmental biology — Posted on 2018-07-26

382 Mechanisms for zinc and proton inhibition of the GluN1/GluN2A NMDA receptor

Jalali-Yazdi, F.; Chowdhury, S.; Yoshioka, C.; Gouaux, E.

10.1101/378422 — biophysics — Posted on 2018-07-26

383 Crossmodal congruency effect scores decrease with repeat test exposure

Gill, S.; Blustein, D.; Wilson, A.; Sensinger, J.

10.1101/186825 — neuroscience — Posted on 2018-07-26

384 CRISPR-induced deletion with SaCas9 restores dystrophin expression in dystrophic models in vitro and in vivo.

Duchene, B. L.; Cherif, K.; Iyombe-Engembe, J.-P.; Guyon, A.; Rousseau, J.; Ouellet, D. L.; Barbeau, X.; Lague, P.; Tremblay, J. P.

10.1101/378331 — molecular biology — Posted on 2018-07-26

385 Limited One-time Sampling Irregularity Age Map (LOTS-IAM): Automatic Unsupervised Detection of Brain White Matter Abnormalities in Structural Magnetic Resonance Images

Rachmadi, M. F.; Valdes Hernandez, M.; Li, H.; Guerrero, R.; Zhang, J.; Rueckert, D.; Komura, T.

10.1101/334292 — neuroscience — Posted on 2018-07-26

386 Fungal chromatin mapping identifies BasR, as the regulatory node of bacteria-induced fungal secondary metabolism

Fischer, J.; Mueller, S. Y.; Netzker, T.; Jaeger, N.; Gacek-Matthews, A.; Scherlach, K.; Stroe, M. C.; Garcia-Altares, M.; Pezzini, F.; Schoeler, H.; Reichelt, M.; Gershenzon, J.; Krespach, M. K. C.; Shelest, E.; Schroeckh, V.; Valiante, V.; Heinzel, T.; Hertweck, C.; Strauss, J.; Brakhage, A. A.

10.1101/211979 — microbiology — Posted on 2018-07-26

387 Pan-cancer analysis of whole genomes reveals driver rearrangements promoted by LINE-1 retrotransposition in human tumours

Rodriguez-Martin, B.; Alvarez, E. G.; Baez-Ortega, A.; Zamora, J.; Supek, F.; Demeulemeester, J.; Santamarina, M.; Ju, Y. S.; Temes, J.; Garcia-Souto, D.; Detering, H.; Li, Y.; Rodriguez-Castro, J.; Dueso-Barroso, A.; Bruzos, A. L.; Dentro, S. C.; Blanco, M. G.; Contino, G.; Ardeljan, D.; Tojo, M.; Roberts, N. D.; Zumalave, S.; Edwards, P. A. W.; Weischenfeldt, J.; Puiggros, M.; Chong, Z.; Chen, K.; Lee, E. A.; Wala, J. A.; Raine, K.; Butler, A.; Waszak, S. M.; Navarro, F. C. P.; Schumacher, S. E.; Monlong, J.; Maura, F.; Bolli, N.; Bourque, G.; Gerstein, M.; Park, P. J.; Wedge, D.; Berroukhim

10.1101/179705 — genomics — Posted on 2018-07-26

388 A Comparison Between Scalp- And Source-Reconstructed EEG Networks

Lai, M.; Demuru, M.; Hillebrand, A.; Fraschini, M.

10.1101/121764 — neuroscience — Posted on 2018-07-26

389 Optical excitation and detection of neuronal activity

Hu, C.; Sam, R.; Shan, M.; Nastasa, V.; Wang, M.; Kim, T.; Gillette, M.; Sengupta, P.; Popescu, G.

10.1101/209759 — bioengineering — Posted on 2018-07-26

390 Protein identification with a nanopore and a binary alphabet

Sampath, G.

10.1101/119313 — bioengineering — Posted on 2018-07-26

391 Temporal scaling of ageing as an adaptive strategy of Escherichia coli

Yang, Y.; Santos, A. L.; Xu, L.; Lotton, C.; Taddei, F.; Lindner, A. B.

10.1101/376566 — evolutionary biology — Posted on 2018-07-26

392 The Rhodobacter sphaeroides methionine sulfoxide reductase MsrP can reduce R- and S- diastereomers of methionine sulfoxide from a broad-spectrum of protein substrates.

Tarrago, L.; Grosse, S.; Siponen, M. I.; Lemaire, D.; Alonso, B.; Miotello, G.; Armengaud, J.; Arnoux, P.; Pignol, D.; Sabaty, M.

10.1101/243626 — biochemistry — Posted on 2018-07-26

393 Plasmodium falciparum Niemann-Pick Type C1-Related Protein is a Druggable Target Required for Parasite Membrane Homeostasis

Istvan, E. S.; Das, S.; Bhatnagar, S.; Beck, J. R.; Owen, E.; LLinas, M.; Ganesan, S. M.; Niles, J. C.; Winzeler, E. A.; Vaidya, A. B.; Goldberg, D. E.

10.1101/371484 — microbiology — Posted on 2018-07-26

394 A systematic review of Drosophila short-term-memory genetics: meta-analysis reveals robust reproducibility

Tumkaya, T.; Ott, S.; Claridge-Chang, A.

10.1101/247650 — animal behavior and cognition — Posted on 2018-07-26

395 No Evidence for Communication in the Complete Locked-in State

Spueler, M.

10.1101/287631 — neuroscience — Posted on 2018-07-26

396 Host-derived population genomics data provides insights into bacterial and diatom composition of the killer whale skin

Hooper, R.; Brealey, J.; van der Valk, T.; Alberdi, A.; Durban, J. W.; Fearnbach, H.; Robertson, K. M.; Baird, R. W.; Hanson, M. B.; Wade, P.; Gilbert, M. T. P.; Morin, P. A.; Wolf, J. B. W.; Foote, A. D.; Guschanski, K.

10.1101/282038 — evolutionary biology — Posted on 2018-07-26

397 Virtual navigation tested on a mobile app is predictive of real-world wayfinding navigation performance

Coutrot, A.; Schmidt, S.; Coutrot, L.; Pittman, J.; Hong, L.; Wiener, J. M.; Holscher, C.; Dalton, R. C.; Hornberger, M.; Spiers, H. J.

10.1101/305433 — neuroscience — Posted on 2018-07-26

398 Decline in pneumococcal disease in unimmunized adults is associated with vaccine-associated protection against colonization in toddlers and preschool-aged children

Weinberger, D. M.; Pitzer, V. E.; Regev-Yochay, G.; Givon-Lavi, N.; Dagan, R.

10.1101/293266 — epidemiology — Posted on 2018-07-26

399 Psychophysiological interaction and beta series correlation for task modulated connectivity: modeling considerations and their relationships

Di, X.; Zhang, Z.; Biswal, B. B.

10.1101/322073 — neuroscience — Posted on 2018-07-26

400 Impaired hematopoiesis and leukemia development in mice with a conditional \"knock-in\" allele of a mutant splicing factor gene U2af1

Fei, D. L.; Zhen, T.; Durham, B.; Ferrarone, J.; Zhang, T.; Garrett, L.; Yoshimi, A.; Abdel-Wahab, O.; Bradley, R.; Liu, P.; Varmus, H.

10.1101/345538 — cancer biology — Posted on 2018-07-26

401 Evolutionary highways to persistent bacterial infection

Bartell, J. A.; Sommer, L. M.; Haagensen, J. A.; Loch, A.; Espinosa, R.; Molin, S.; Johansen, H. K.

10.1101/326025 — evolutionary biology — Posted on 2018-07-26

402 Compulsivity and impulsivity are linked to distinct aberrant developmental trajectories of fronto-striatal myelination

Ziegler, G.; Hauser, T.; Moutoussis, M.; Bullmore, E. T.; Goodyer, I. M.; Fonagy, P.; Jones, P. B.; NSPN Consortium, ; Lindenberger, U.; Dolan, R. J.

10.1101/328146 — neuroscience — Posted on 2018-07-26

403 Can model-free reinforcement learning operate over information stored in working-memory?

Feher da Silva, C.; Yao, Y.-W.; Hare, T. A.

10.1101/107698 — neuroscience — Posted on 2018-07-26

404 A scalable method for parameter-free simulation and validation of mechanistic cellular signal transduction network models

Romers, J. C.; Thieme, S.; Muenzner, U.; Krantz, M.

10.1101/107235 — systems biology — Posted on 2018-07-26

405 Coordinated electrical activity in the olfactory bulb gates the oscillatory entrainment of entorhinal networks in neonatal mice

Gretenkord, S.; Kostka, J. K.; Hartung, H.; Watznauer, K.; Fleck, D.; Minier-Toribio, A.; Spehr, M.; Hanganu-Opatz, I. L.

10.1101/352054 — neuroscience — Posted on 2018-07-26

406 Is it actionable? An Evaluation of the Rapid PCR-Based Blood Culture Identification Panel on the Management of Gram-Positive and Gram-Negative Blood Stream Infection

Tseng, A. S.; Kasule, S. N.; Rice, F.; Mi, L.; Chan, L.; Seville, M. T.; Grys, T. E.

10.1101/375477 — microbiology — Posted on 2018-07-26

407 Diversity and stability of microbiota are key factors associated to healthy and diseased Crassostrea gigas oysters

Clerissi, C.; de Lorgeril, J.; Petton, B.; Lucasson, A.; Escoubas, J.-M.; Gueguen, Y.; Mitta, G.; Toulza, E.

10.1101/378125 — microbiology — Posted on 2018-07-26

408 Venoms of related mammal-eating species of taipans (Oxyuranus) and brown snakes (Pseudonaja) differ in composition of toxins involved in mammal poisoning

Skejic, J.; Steer, D. L.; Dunstan, N.; Hodgson, W. C.

10.1101/378141 — evolutionary biology — Posted on 2018-07-26

409 Short hairpin RNAs artifactually impair cell growth and suppress clustered microRNA expression.

Powers, J.; da Rocha, E. L.; Pearson, D.; Missios, P.; de Soysa, T. Y.; Barragan, J.; Cahan, P.; Daley, G.

10.1101/372920 — cancer biology — Posted on 2018-07-26

410 Frictional effects on RNA folding: Speed limit and Kramers turnover

Hori, N.; Denesyuk, N. A.; Thirumalai, D.

10.1101/376558 — biophysics — Posted on 2018-07-26

411 Building comprehensive MS-friendly databases for proteomic analysis of bacterial species of unknown genetic background

Machado, K. C.; Fortuin, S.; Tomazella, G. G.; Fonseca, A. F.; Warren, R.; Wiker, H. G.; de Souza, S. J.; de Souza, G. A.

10.1101/378117 — bioinformatics — Posted on 2018-07-26

412 Differential T cell reactivity to hypocretin and flu antigen epitopes provides clues to the pathophysiology of Type 1 narcolepsy

Luo, G.; Ambati, A.; Lin, L.; Bonvalet, M.; Ji, X.; Maecker, H. T.; Mignot, E.

10.1101/378109 — immunology — Posted on 2018-07-26

413 ALSgeneScanner: a pipeline for the analysis and interpretation of DNA NGS data of ALS patients

Iacoangeli, A.; Al Khleifat, A.; Sproviero, W.; Shatunov, A.; Jones, A. R.; Opie-Martin, S.; Naselli, E.; Fogh, I.; Hodges, A. K.; Dobson, R. J.; Newhouse, S. J.; Al-Chalabi, A.

10.1101/378158 — bioinformatics — Posted on 2018-07-26

414 Functional cross-talk between allosteric effects of activating and inhibiting ligands underlies PKM2 regulation

Macpherson, J. A.; Theisen, A.; Masino, L.; Fets, L.; Driscoll, P. C.; Encheva, V.; Snijders, A. P.; Martin, S. R.; Kleinjung, J.; Barran, P. E.; Fraternali, F.; Anastasiou, D.

10.1101/378133 — biochemistry — Posted on 2018-07-26

415 Composition and consistence of the bacterial microbiome in upper, middle and lower esophagus before and after Lugol’s iodine staining

Yin, J.; Dong, L.; Zhao, J.; Shao, D.; liu, A.; Li, J.; Yu, A.; Wei, W.-q.; Chen, W.

10.1101/375469 — epidemiology — Posted on 2018-07-26

416 A low resolution epistasis mapping approach to identify chromosome arm interactions in allohexaploid wheat

Santantonio, N.; Jannink, J.-L.; Sorrells, M. E.

10.1101/377713 — genetics — Posted on 2018-07-26

417 Short-term insurance versus long-term bet-hedging strategies as adaptations to variable environments

Haaland, T. R.; Wright, J.; Tufto, J.; Ratikainen, I. I.

10.1101/378091 — evolutionary biology — Posted on 2018-07-26

418 Cell morphological motif detector for high-resolution 3D microscopy images

Driscoll, M. K.; Welf, E. S.; Dean, K. M.; Fiolka, R.; Danuser, G.

10.1101/376608 — cell biology — Posted on 2018-07-26

419 DeepSeqPan, a novel deep convolutional neural network model for pan-specific class I HLA-peptide binding affinity prediction

LIU, Z.; Cui, Y.; Xiong, Z.; Nasiri, A.; Zhang, A.; Hu, J.

10.1101/299412 — bioinformatics — Posted on 2018-07-26

420 In Vitro Assay for the Detection of Network Connectivity in Embryonic Stem Cell-Derived Cultures

Gamble, J. R.; Zhang, E. T.; Iyer, N.; Sakiyama-Elbert, S.; Barbour, D. L.

10.1101/377689 — bioengineering — Posted on 2018-07-26

421 Exploration of plant biodiversity to investigate regulation of photosynthesis in natural environment

Sello, S.; Alboresi, A.; Baldan, B.; Morosinotto, T.

10.1101/368852 — plant biology — Posted on 2018-07-26

422 ACBD3 is an essential pan-enterovirus host factor that mediates the interaction between viral 3A protein and cellular protein PI4KB

van Kuppeveld, F. J. M.; Lyoo, H.; van der Schaar, H. M.; Dorobantu, C. M.; Strating, J. R. P. M.

10.1101/375550 — microbiology — Posted on 2018-07-26

423 The Project MinE databrowser: bringing large-scale whole-genome sequencing in ALS to researchers and the public.

10.1101/377911 — genomics — Posted on 2018-07-26

424 Introduce a New Approach to Detect Genes Associated to Oral Squamous Cell Carcinoma

Li, J.; Yang, C.; Yang, J.-J.; Chen, S.; Wang, Q.; Pan, H.; Liang, S.; Qiu, W.

10.1101/377788 — genetics — Posted on 2018-07-26

425 Unraveling the genetic architecture of grain size in einkorn wheat through linkage and homology mapping, and transcriptomic profiling

Yu, K.; Liu, D.; Chen, Y.; Wang, D.; Yang, W.; Yang, W.; Yin, L.; Zhang, C.; Zhao, S.; Sun, J.; Liu, C.; Zhang, A.

10.1101/377820 — genetics — Posted on 2018-07-26

426 Bio-optical properties and radiative energy budgets in fed and starved scleractinian corals (Pocillopora damicornis) during thermal bleaching

Lyndby, N. H.; Holm, J. B.; Wangpraseurt, D.; Ferrier-Pages, C.; Kühl, M.

10.1101/377937 — biophysics — Posted on 2018-07-26

427 The R package Rsubread is easier, faster, cheaper and better for alignment and quantification of RNA sequencing reads

Liao, Y.; Smyth, G. K.; Shi, W.

10.1101/377762 — bioinformatics — Posted on 2018-07-26

428 Social and nutritional factors shape larval aggregation, foraging, and body mass in a polyphagous fly

Morimoto, J.; Nguyen, B.; Tarahi Tabrizi, S.; Ponton, F.; Taylor, P. W.

10.1101/377986 — zoology — Posted on 2018-07-26

429 Transforming Insect Population Control with Precision Guided Sterile Males

Kandul, N. P.; Liu, J.; Sanchez, H. M.; Wu, S. L.; Marshall, J. M.; Akbari, O. S.

10.1101/377721 — synthetic biology — Posted on 2018-07-26

430 PIF transcription factors link a neighbor threat cue to accelerated reproduction in Arabidopsis

Costa Galvao, V.; Fiorucci, A.-S.; Trevisan, M.; Franco-Zorrilla, J. M.; Goyal, A.; Schmid-Siegert, E.; Solano, R.; Fankhauser, C.

10.1101/377663 — plant biology — Posted on 2018-07-26

431 Auditory and Language Contributions to Neural Encoding of Speech Features in Noisy Environments

Zou, J.; Feng, J.; Xu, T.; Jin, P.; Luo, C.; Chen, F.; Zhang, J.; Ding, N.

10.1101/377838 — neuroscience — Posted on 2018-07-26

432 Human posterior parietal cortex responds to visual stimuli as early as peristriate occipital cortex

Regev, T. I.; Winawer, J.; Gerber, E. M.; Knight, R. T.; Deouell, L. Y.

10.1101/377887 — neuroscience — Posted on 2018-07-26

433 Stavudine Reduces NLRP3-Inflammasome Activation and Upregulates Aβ-Autophagy

La Rosa, F.; Saresella, M.; Marventano, I.; Piancone, F.; Ripamonti, E.; Zoia, C. P.; Conti, E.; Ferrarese, C.; Clerici, M.

10.1101/377945 — molecular biology — Posted on 2018-07-26

434 A dual motif mediates outer-membrane translocation and packing of glycosidases into Bacteroides Outer Membrane Vesicles.

Valguarnera, E.; Scott, N. E.; Feldman, M.

10.1101/377861 — microbiology — Posted on 2018-07-26

435 Sympatric and allopatric evolutionary contexts shape differential immune response in Biomphalaria / Schistosoma interaction

Portet, A.; Pinaud, S.; Chaparro, C.; Galinier, R.; Charriere, G.; Allienne, J.-F.; Duval, D.; Gourbal, B.

10.1101/378034 — immunology — Posted on 2018-07-26

436 Genotype-covariate correlation and interaction disentangled by a whole-genome multivariate reaction norm model

Ni, G.; van der Werf, J.; Zhou, X.; Hypponen, E.; Wray, N. R.; Lee, S. H.

10.1101/377796 — genetics — Posted on 2018-07-26

437 The humungous fungus of Michigan three decades on

Anderson, J. B.; Bruhn, J. N.; Kasimer, D.; Wang, H.; Rodrigue, N.; Smith, M. L.

10.1101/377234 — evolutionary biology — Posted on 2018-07-26

438 Effect of feeding and thermal stress on photosynthesis, respiration and the carbon budget of the scleractinian coral Pocillopora damicornis

Lyndby, N.; Holm, J. B.; Wangpraseurt, D.; Grover, R.; Rottier, C.; Kühl, M.; Ferrier-Pages, C.

10.1101/378059 — ecology — Posted on 2018-07-26

439 BASILIScan: a tool for high-throughput analysis of intrinsic disorder patterns in homologous proteins

Barski, M.

10.1101/378018 — bioinformatics — Posted on 2018-07-26

440 A nonlinear simulation framework supports adjusting for age when analyzing BrainAGE.

Le, T. T.; Kuplicki, R.; McKinney, B. A.; Yeh, H.-w.; Thompson, W. K.; Tulsa 1000 Investigators, ; Paulus, M. P.

10.1101/377648 — bioinformatics — Posted on 2018-07-26

441 Sexual behavior of the desert locust during intra- and inter-phase interactions

Golov, Y.; Rillich, J.; Douek, M.; Harari, A. R.; Ayali, A.

10.1101/377903 — animal behavior and cognition — Posted on 2018-07-26

442 Increased α-2,8-sialyltransferase 8B (ST8SIA2) expression in schizophrenia superior temporal gyrus

Mueller, T.; Yates, S. D.; Meador-Woodruff, J. H.

10.1101/377770 — neuroscience — Posted on 2018-07-26

443 Human cytomegalovirus RNA2.7 regulates host cell cycle and facilitates viral DNA replication by inhibiting RNA polymerase II phosphorylation

Huang, Y.; Zhang, J.; Guo, X.; Wang, Q.; Liu, Z.; Ma, Y.; Qi, Y.; Ruan, Q.

10.1101/378083 — microbiology — Posted on 2018-07-26

444 Water quality and microbial load: a double-threshold identification procedure intended for space applications

Amalfitano, S.; Levantesi, C.; Garrelly, L.; Giacosa, D.; Bersani, F.; Rossetti, S.

10.1101/377697 — microbiology — Posted on 2018-07-26

445 Filopodome mapping identifies p130Cas as a mechanosensitive regulator of filopodia stability

Jacquemet, G.; Saup, R.; Hamidi, H.; Miihkinen, M.; Ivaska, J.

10.1101/377879 — cell biology — Posted on 2018-07-26

446 Moving beyond P values: Everyday data analysis with estimation plots

Ho, J.; Tumkaya, T.; Aryal, S.; Choi, H.; Claridge-Chang, A.

10.1101/377978 — bioinformatics — Posted on 2018-07-26

447 An open source platform for analyzing and sharing worm behavior data

Javer, A.; Currie, M.; Lee, C. W.; Hokanson, J.; Li, K.; Martineau, C. N.; Yemini, E.; Grundy, L. J.; Li, C.; Chng, Q.; Schafer, W. R.; Nollen, E. A.; Kerr, R.; Brown, A. E.

10.1101/377960 — animal behavior and cognition — Posted on 2018-07-26

448 Structural insight into the mechanism of neuraminidase inhibitor-resistant mutations in human-infecting H10N8 Influenza A virus

Oladejo, B. O.; Bi, Y.; Vavricka, C. J.; Li, C.; Chai, Y.; Xu, K.; Li, L.; Lu, Z.; Li, J.; Wong, G.; Mohan, S.; Pinto, B. M.; Jiang, H.; Qi, J.; Gao, G. F.; Tien, P.; WU, Y.

10.1101/378075 — microbiology — Posted on 2018-07-26

449 Knowledge and self-care practice of leprosy patients at ALERT Hospital, Ethiopia

Girma, L.; Bobosha, K.; Hailu, T.; Negera, E.

10.1101/378067 — epidemiology — Posted on 2018-07-26

450 Desensitization of NMDA receptors depends of their association with plasma membrane sodium-calcium exchangers in lipid nanoclasters

Sibarov, D. A.; Poguzhelskaya, E. E.; Antonov, S. M.

10.1101/378026 — neuroscience — Posted on 2018-07-26

451 Inferring interaction partners from protein sequences using mutual information

Bitbol, A.-F.

10.1101/378042 — bioinformatics — Posted on 2018-07-26

452 Opposing effects of impulsivity and mindset on sources of science self-efficacy and STEM interest in adolescents

Marriott, L. K.; Coppola, L. K.; Mitchell, S. H.; Bouwma-Gearhart, J.; Chen, Z.; Shifrer, D.; Shannon, J. K.

10.1101/377994 — scientific communication and education — Posted on 2018-07-26

453 Assessment of Auditable Pharmaceutical Transactions at Public Hospitals in Gamo Gofa, Southern Ethiopia, a Comparative cross-sectional study, July 2017

sorato, m. m.; Mesfin, A. A.; sorato, B. W.

10.1101/378000 — epidemiology — Posted on 2018-07-26

454 Direct purification of CRISPR/Cas ribonucleoprotein from E. coli in a single step

lin, s.; qiao, j.; ma, l.; liu, y.

10.1101/377366 — synthetic biology — Posted on 2018-07-26

455 Development and Application of a High-Content Virion Display Human GPCR Array

Syu, G.-D.; Wang, S.-C.; Ma, G.; Liu, S.; Pearce, D.; Prakash, A.; Henson, B.; Weng, L.-C.; Ghosh, D.; Ramos, P.; Eichinger, D.; Pino, I.; Dong, X.; Xiao, J.; Wang, S.; Tao, N.; Kim, K. S.; Desai, P. J.; Zhu, H.

10.1101/377754 — pharmacology and toxicology — Posted on 2018-07-26

456 AKT, NOTCH and GSK3β interact to trigger early myogenesis in vertebrate embryos.

Lebrun, D.; Rahal, P.; MORIN, V.; Marcelle, C.

10.1101/377804 — developmental biology — Posted on 2018-07-26

457 Modelling Intrinsically Disordered Protein Dynamics as Networks of Transient Secondary Structure

Wayment-Steele, H. K.; Hernandez, C. X.; Pande, V. S.

10.1101/377564 — biophysics — Posted on 2018-07-26

458 Dynamic multifactor hubs interact transiently with sites of active transcription in Drosophila embryos

Mir, M.; Stadler, M. R.; Ortiz, S. A.; Harrison, M. M.; Darzacq, X.; Eisen, M. B.

10.1101/377812 — developmental biology — Posted on 2018-07-26

459 Measurement invariance explains the universal law of generalization for psychological perception

Frank, S. A.

10.1101/341305 — animal behavior and cognition — Posted on 2018-07-25

460 Temporal scaling of ageing as an adaptive strategy of Escherichia coli

Yang, Y.; Santos, A. L.; Xu, L.; Lotton, C.; Taddei, F.; Lindner, A. B.

10.1101/376566 — evolutionary biology — Posted on 2018-07-25

461 Detecting tandem repeat expansions in cohorts sequenced with short-read sequencing data

Tankard, R. M.; Bennett, M. F.; Degorski, P.; Delatycki, M. B.; Lockhart, P. J.; Bahlo, M.

10.1101/157792 — bioinformatics — Posted on 2018-07-25

462 Repeated Measures Regression In Laboratory, Clincal And Enviromental Research - Different Between/Within Subject Slopes And Common Misconceptions

Hoover, D. R.; Shi, Q.; Anastos, K.

10.1101/374124 — epidemiology — Posted on 2018-07-25

463 Molecular typing and macrolide resistance analyses of Treponema pallidumin heterosexuals and men who have sex with men communities in Japan, 2017.

Kanai, M.; Arima, Y.; Nishiki, S.; Shimuta, K.; Itoda, I.; Matsui, T.; Oishi, K.; Ohnishi, M.; Nakayama, S.-i.

10.1101/375485 — epidemiology — Posted on 2018-07-25

464 Predicting HIV Incidence in the SEARCH Trial: A Mathematical Modelling Study

Jewell, B. L.; Bershteyn, A.

10.1101/376244 — epidemiology — Posted on 2018-07-25

465 High resolution discovery of chromatin interactions

Guo, Y.; Krismer, K.; Closser, M.; Wichterle, H.; Gifford, D. K.

10.1101/376194 — bioinformatics — Posted on 2018-07-25

466 Do city cachers store less? The effect of urbanization and exploration on spatial memory in individual scatter hoarders

Thompson, M. J.; Morand-Ferron, J.

10.1101/377143 — animal behavior and cognition — Posted on 2018-07-25

467 A robust image registration interface for large volume brain atlas

Ni, H.; Tan, C.; Feng, Z.; Chen, S.; Zhang, Z.; Li, W.; Guan, Y.; Gong, H.; Luo, Q.; Li, A.

10.1101/377044 — neuroscience — Posted on 2018-07-25

468 Complexity of Brain Activity and Connectivity in Functional Neuroimaging

Dimitriadis, S. I.

10.1101/377028 — neuroscience — Posted on 2018-07-25

469 Regulation of T cell expansion by antigen presentation dynamics

Mayer, A.; Zhang, Y.; Perelson, A. S.; Wingreen, N. S.

10.1101/377036 — immunology — Posted on 2018-07-25

470 Convergent evolution of psilocybin biosynthesis by psychedelic mushrooms

Awan, A. R.; Winter, J. M.; Turner, D.; Shaw, W. M.; Suz, L. M.; Bradshaw, A. J.; Ellis, T.; Dentinger, B.

10.1101/374199 — evolutionary biology — Posted on 2018-07-25

471 SOCIAL STRESS AS A PRIMING MECHANISM FOR THERMAL TOLERANCE DURING A POLEWARD RANGE SHIFT

Wood, C.; Fitt, R.; Lancaster, L.

10.1101/377283 — evolutionary biology — Posted on 2018-07-25

472 DTK-Dengue: A new agent-based model of dengue virus transmission dynamics

Soda, K. J.; Moore, S. M.; Espana, G.; Bloedow, J.; Raybaud, B.; Althouse, B.; Johansson, M.; Wenger, E.; Welkhoff, P.; Perkins, A.; ten Bosch, Q. A.

10.1101/376533 — epidemiology — Posted on 2018-07-25

473 Rethinking the efficacy of acellular pertussis vaccines for primary immunization

Domenech de Celles, M.; Rohani, P.; King, A. A.

10.1101/376947 — epidemiology — Posted on 2018-07-25

474 Fundamental and realized feeding niche breadths of sexual and asexual stick-insects

Larose, C.; Parker, D. J.; Schwander, T.

10.1101/377176 — ecology — Posted on 2018-07-25

475 Interaction modifications lead to greater robustness than pairwise non-trophic effects in ecological networks

Terry, J. C.; Morris, R. J.; Bonsall, M.

10.1101/377473 — ecology — Posted on 2018-07-25

476 PhISCS - A Combinatorial Approach for Sub-perfect Tumor Phylogeny Reconstruction via Integrative use of Single Cell and Bulk Sequencing Data

Malikic, S.; Ciccolella, S.; Rashidi Mehrabadi, F.; Ricketts, C.; Rahman, M. K.; Haghshenas, E.; Seidman, D.; Hach, F.; Hajirasouliha, I.; Sahinalp, S. C.

10.1101/376996 — bioinformatics — Posted on 2018-07-25

477 The application of Hadoop in Structural Bioinformatics

Alnasir, J.; Shanahan, H.

10.1101/376467 — bioinformatics — Posted on 2018-07-25

478 Exchange catalysis during anaerobic methanotrophy revealed by 12CH2D2 & 13CH3D in methane

Ash, J. L.; Egger, M.; Treude, T.; Kohl, I.; Cragg, B.; Parkes, R. J.; Slomp, C. P.; Sherwood Lollar, B.; Young, E. D.

10.1101/377531 — biochemistry — Posted on 2018-07-25

479 Re-annotated Nicotiana benthamiana gene models for enhanced proteomics and reverse genetics

Kourelis, J.; Kaschani, F.; Grosse-Holz, F. M.; Homma, F.; Kaiser, M.; van der Hoorn, R. A. L.

10.1101/373506 — plant biology — Posted on 2018-07-25

480 Narcolepsy type 1 patients have abnormal brain activation to neutral-rated movies in humor-paradigm

Juvodden, H. T.; Alnaes, D.; Lund, M. J.; Dietrichs, E.; Thorsby, P. M.; Westlye, L. T.; Knudsen, S.

10.1101/377499 — neuroscience — Posted on 2018-07-25

481 Evaluation of InSeq to Identify Genes Essential for Pseudomonas aeruginosa PGPR2 Corn Root Colonization

Sivakumar, R.; Ranjani, J.; Vishnu, U. S.; Jayashree, S.; Lozano, G. L.; Miles, J.; Broderick, N.; Guan, C.; Gunasekaran, P.; Handelsman, J.; Rajendhran, J.

10.1101/377168 — genomics — Posted on 2018-07-25

482 Fine-scale Inference of Ancestry Segments without Prior Knowledge of Admixing Groups

Salter-Townshend, M.; Myers, S.

10.1101/376137 — genomics — Posted on 2018-07-25

483 Mendelian Randomization integrating GWAS and eQTL data reveals genetic determinants of complex and clinical traits

Porcu, E.; Rüeger, S.; eQTLGen Consortium, ; Santoni, F. A.; Reymond, A.; Kutalik, Z.

10.1101/377267 — genetics — Posted on 2018-07-25

484 Diversity-dependent plant-soil feedbacks underlie long-term plant diversity effects on primary productivity

Guerrero-Ramirez, N. R.; Reich, P. B.; Wagg, C.; Ciobanu, M.; Eisenhauer, N.

10.1101/376269 — ecology — Posted on 2018-07-25

485 Cancer evolution in a changing microenvironment

Jiang, X.; Tomlinson, I. P. M.

10.1101/377226 — cancer biology — Posted on 2018-07-25

486 CellFishing.jl: an ultrafast and scalable cell search method for single-cell RNA-sequencing

Sato, K.; Tsuyuzaki, K.; Shimizu, K.; Nikaido, I.

10.1101/374462 — bioinformatics — Posted on 2018-07-25

487 Towards an autologous iPSC-derived patient-on-a-chip

Ramme, A. P.; Koenig, L.; Hasenberg, T.; Schwenk, C.; Magauer, C.; Faust, D.; Lorenz, A. K.; Krebs, A.-C.; Drewell, C.; Schirrmann, K.; Vladetic, A.; Lin, G.-C.; Pabinger, S.; Neuhaus, W.; Bois, F.; Lauster, R.; Marx, U.; Dehne, E.-M.

10.1101/376970 — bioengineering — Posted on 2018-07-25

488 PABA Release from Chitosan-PCL with Induced Electric Current

Miller, J. M.; de Guzman, R. C.

10.1101/377481 — bioengineering — Posted on 2018-07-25

489 Identifying the cognitive processes underpinning hippocampal-dependent tasks

Clark, I. A.; Hotchin, V.; Monk, A.; Pizzamiglio, G.; Liefgreen, A.; Maguire, E. A.

10.1101/377408 — neuroscience — Posted on 2018-07-25

490 Homeostatic and Interferon-induced gene expression represent different states of promoter-associated transcription factor ISGF3

Platanitis, E.; Demiroz, D.; Capelle, C.; Schneller, A.; Hartl, M.; Gossenreiter, T.; Mueller, M.; Novatchkova, M.; Decker, T.

10.1101/377275 — immunology — Posted on 2018-07-25

491 A genetic variant at coronary artery disease and ischemic stroke locus 1p32.2 regulates endothelial responses to hemodynamics

Krause, M. D.; Huang, R.-T.; Wu, D.; Shentu, T.-P.; Harrison, D. L.; Whalen, M. B.; Stolze, L. K.; Di Rienzo, A.; Moskowitz, I. P.; Civelek, M.; Romanoski, C. E.; Fang, Y.

10.1101/377549 — genomics — Posted on 2018-07-25

492 Heterochromatin-enriched assemblies reveal the sequence and organization of the Drosophila melanogaster Y chromosome

Chang, C.-H.; Larracuente, A. M.

10.1101/363101 — genomics — Posted on 2018-07-25

493 Subdivision of ancestral scale genetic program underlies origin of feathers and avian scutate scales

Musser, J. M.; Wagner, G. P.; Liang, C.; Stabile, F. A.; Cloutier, A.; Baker, A. J.; Prum, R. O.

10.1101/377358 — evolutionary biology — Posted on 2018-07-25

494 M3C: A Monte Carlo reference-based consensus clustering algorithm

John, C. R.; Watson, D.; Russ, D.; Goldmann, K.; Ehrenstein, M.; Lewis, M.; Pitzalis, C.; Barnes, M.

10.1101/377002 — bioinformatics — Posted on 2018-07-25

495 Assessing sub-cellular resolution in spatial proteomics experiments

Gatto, L.; Breckels, L. M.; Lilley, K. S.

10.1101/377630 — bioinformatics — Posted on 2018-07-25

496 Gene expression patterns in synchronized islet populations

Mukhitov, N.; Roper, M.

10.1101/377317 — systems biology — Posted on 2018-07-25

497 Distinct timescales of RNA regulators enable the construction of a genetic pulse generator

Westbrook, A.; Tang, X.; Marshall, R.; Maxwell, C.; Chappell, J.; Agrawal, D.; Dunlop, M.; Noireaux, V.; Beisel, C.; Lucks, J.; Franco, E.

10.1101/377572 — synthetic biology — Posted on 2018-07-25

498 Enforced expression of phosphatidylinositol 4-phosphate 5-kinase homolog (PIPKH) alters phosphatidylinositol 4,5-bisphosphate distribution and the localization of small G-proteins

Yang, Y.; Park, M.; Fairn, G.

10.1101/377465 — cell biology — Posted on 2018-07-25

499 PDEδ inhibition impedes the proliferation and survival of human colorectal cancer cell lines harboring oncogenic KRas

Klein, C. H.; Truxius, D. C.; Vogel, H. A.; Harizanova, J.; Murarka, S.; Martin-Gago, P.; Bastiaens, P.

10.1101/377259 — cell biology — Posted on 2018-07-25

500 Tsc1-mTOR signaling controls the structure and function of midbrain dopamine neurons

Kosillo, P.; Doig, N.; Agopyan-Miu, A.; Ahmed, K.; Conyers, L.; Threlfell, S.; Magill, P.; Bateup, H.

10.1101/376814 — neuroscience — Posted on 2018-07-25

501 Does the heart forget? Modulation of cardiac activity induced by inhibitory control over emotional memories

Legrand, N.; Etard, O.; Vandevelde, A.; Pierre, M.; Viader, F.; Clochon, P.; Doidy, F.; Peschanski, D.; Eustache, F.; Gagnepain, P.

10.1101/376954 — neuroscience — Posted on 2018-07-25

502 Overdosage of balanced protein complexes reduces proliferation rate in aneuploid cells

Chen, Y.; Chen, S.; Li, K.; Zhang, Y.; Huang, X.; Li, T.; Wu, S.; Wang, Y.; Carey, L. B.; Qian, W.

10.1101/376988 — systems biology — Posted on 2018-07-25

503 3D-printable tools for developmental biology: Improving embryo injection and screening techniques through 3D-printing technology

Truchado-Garcia, M.; Harland, R. M.; Abrams, M. J.

10.1101/376657 — developmental biology — Posted on 2018-07-25

504 Quantitative single-molecule three-color Förster resonance energy transfer by photon distribution analysis

Barth, A.; Voith von Voithenberg, L.; Lamb, D.

10.1101/372730 — biophysics — Posted on 2018-07-25

505 In situ protein micro-crystal fabrication by cryo-FIB for electron diffraction

Li, X.; Zhang, S.; Sun, F.

10.1101/377192 — biophysics — Posted on 2018-07-25

506 Comparison of the 3D-IR-BTFE method and the conventional method in the head MRI contrast

Hirahara, D.

10.1101/211763 — bioengineering — Posted on 2018-07-25

507 Early identity recognition of familiar faces is not dependent on holistic processing

Mohr, S.; Wang, A.; Engell, A. D.

10.1101/287466 — neuroscience — Posted on 2018-07-25

508 Extreme genetic structure and dynamic range evolution in a montane passerine bird: implications for tropical diversification

Cadena, D.; Perez-Eman, J. L.; Cuervo, A. M.; Cespedes, L. N.; Epperly, K. L.; Klicka, J. T.

10.1101/376681 — evolutionary biology — Posted on 2018-07-25

509 TUBA1A mutations identified in lissencephaly patients dominantly disrupt neuronal migration and impair dynein activity

Aiken, J.; Moore, J.; Bates, E. A.

10.1101/377440 — developmental biology — Posted on 2018-07-25

510 Compensatory mechanisms render Tcf7l1a dispensable for eye formation despite its requirement in eye field specification

Young, R. M.; Cavodeassi, F.; Hawkins, T. A.; Stickney, H. L.; Schwarz, Q.; Lawrence, L. M.; Wierzbicki, C.; Gestri, G.; Ambrosio, E. M.; Klosner, A.; Rowell, J.; Bianco, I. H.; Allende, M. L.; Wilson, S. W.

10.1101/377119 — developmental biology — Posted on 2018-07-25

511 Microscale light management and inherent optical properties of intact corals studied with optical coherence tomography

Wangpraseurt, D.; Jacques, S. L.; Lyndby, N.; Holm, J. B.; Ferrier Pages, C.; Kuhl, M.

10.1101/376723 — biophysics — Posted on 2018-07-25

512 Late cortical tracking of ignored speech facilitates neural selectivity in acoustically challenging conditions

Fiedler, L.; Woestmann, M.; Herbst, S. K.; Obleser, J.

10.1101/238642 — neuroscience — Posted on 2018-07-25

513 Simple statistical identification and removal of contaminant sequences in marker-gene and metagenomics data

Davis, N. M.; Proctor, D.; Holmes, S. P.; Relman, D. A.; Callahan, B. J.

10.1101/221499 — bioinformatics — Posted on 2018-07-25

514 Comparison of the 3D-IR-BTFE method and the conventional method in the head MRI contrast

Hirahara, D.

10.1101/211763 — bioengineering — Posted on 2018-07-25

515 Muscle nonshivering thermogenesis in a feral mammal

Nowack, J.; Vetter, S.; Stalder, G.; Painer, J.; Kral, M.; Smith, S.; Le, M. H.; Jurcevic, P.; Bieber, C.; Arnold, W.; Ruf, T.

10.1101/377051 — physiology — Posted on 2018-07-25

516 A common representation of time across visual and auditory modalities

Barne, L. C.; Sato, J. R.; Camargo, R. Y.; Claessens, P. M. E.; Caetano, M. S.; Cravo, A. M.

10.1101/183426 — neuroscience — Posted on 2018-07-25

517 Neural Circuit Mechanism of Decision Uncertainty and Change-of-Mind

Atiya, N. A. A.; Rano, I.; Prasad, G.; Wong-Lin, K.

10.1101/377432 — neuroscience — Posted on 2018-07-25

518 The USTC complex co-opts an ancient machinery to drive piRNA transcription in C. elegans

Weng, C.; Kosalka, A.; Berkyurek, A. C.; Stempor, P.; Feng, X.; Mao, H.; Zeng, C.; Li, W.-J.; Yan, Y.-H.; Dong, M.-Q.; Zuliani, C.; Barabas, O.; Ahringer, J.; Guang, S.; Miska, E.

10.1101/377390 — developmental biology — Posted on 2018-07-25

519 Platypus Induced Pluripotent Stem Cells: the Unique Pluripotency Signature of a Monotreme

Whitworth, D. J.; Limnios, I.; Gauthier, M.; Weeratunga, P.; Ovchinnikov, D.; Baillie, G.; Grimmond, S.; Graves, J.; Wolvetang, E. J.

10.1101/377010 — cell biology — Posted on 2018-07-25

520 Estimating DNA-DNA interaction frequency from Hi-C data at restriction-fragment resolution

Cameron, C. J.; Dostie, J.; Blanchette, M.

10.1101/377523 — bioinformatics — Posted on 2018-07-25

521 SANe: The Seed Active Network for Discovering Transcriptional Regulatory Programs of Seed Development.

Gupta, C.; Krishnan, A.; Schneider, A.; Denbow, C.; Collakova, E.; Wolinski, P.; Pereira, A.

10.1101/165894 — systems biology — Posted on 2018-07-25

522 Drug treatment efficiency depends on the initial state of activation in nonlinear pathways

Doldan-Martelli, V. L.; Miguez, D. G.

10.1101/153981 — systems biology — Posted on 2018-07-25

523 No compelling evidence that more physically attractive young adult women have higher estradiol or progesterone

Jones, B. C.; Hahn, A. C.; Fisher, C. I.; Wang, H.; Kandrik, M.; Lao, J.; Han, C.; Lee, A. J.; Holzleitner, I. J.; DeBruine, L. M.

10.1101/136515 — animal behavior and cognition — Posted on 2018-07-25

524 Idiosyncratic, retinotopic bias in face identification modulated by familiarity

Visconti di Oleggio Castello, M.; Taylor, M.; Cavanagh, P.; Gobbini, M. I.

10.1101/253468 — neuroscience — Posted on 2018-07-25

525 The accumulation of N6-methyl-2-deoxyadenosine in DNA drives activity-induced gene expression and is required for the extinction of conditioned fear

Li, X.; Zhao, Q.; Wei, W.; Lin, Q.; Magnan, C.; Emami, M.; Wearick-Silva, L. E.; Viola, T.; Marshall, P.; Madugalle, S. U.; Nainar, S.; Vagbo, C. B.; Leighton, L.; Zajaczkowski, E. L.; Ke, K.; Grassi-Oliveira, R.; Bjoras, M.; Baldi, P. F.; Spitale, R. C.; Bredy, T. W.

10.1101/059972 — neuroscience — Posted on 2018-07-25

526 A transcallosal fiber system between left and right homotopic inferior frontal regions supports complex linguistic processing

Kellmeyer, P.; Vry, M.-S.; Ball, T.

10.1101/079244 — neuroscience — Posted on 2018-07-25

527 Representation of real-world event schemas during narrative perception

Baldassano, C.; Hasson, U.; Norman, K. A.

10.1101/252718 — neuroscience — Posted on 2018-07-25

528 Cerebellar learning using perturbations

Bouvier, G.; Aljadeff, J.; Clopath, C.; Bimbard, C.; Ranft, J.; Blot, A.; Nadal, J.-P.; Brunel, N.; Hakim, V.; Barbour, B.

10.1101/053785 — neuroscience — Posted on 2018-07-25

529 Estimating the timing of multiple admixture pulses during local ancestry inference.

Medina, P.; Thornlow, B.; Nielsen, R.; Corbett-Detig, R.

10.1101/314617 — evolutionary biology — Posted on 2018-07-25

530 BEL Commons: an environment for exploration and analysis of networks encoded in Biological Expression Language

Hoyt, C. T.; Domingo-Fernandez, D.; Hofmann-Apitius, M.

10.1101/288274 — systems biology — Posted on 2018-07-25

531 Live Zika virus chimeric vaccine candidate based on a yellow fever 17-D attenuated backbone

Touret, F.; Gilles, M.; Klitting, R.; Aubry, F.; de Lamballerie, X.; Nougairede, A.

10.1101/272625 — microbiology — Posted on 2018-07-25

532 Ground-truthing environmental DNA metabarcoding for ecological hypothesis testing at the pondscape

Harper, L. R.; Lawson Handley, L.; Hahn, C.; Boonham, N.; Rees, H. C.; Lewis, E.; Adams, I. P.; Brotherton, P.; Phillips, S.; Hänfling, B.

10.1101/278309 — ecology — Posted on 2018-07-25

533 SGC-GAK-1: a chemical probe for cyclin G associated kinase (GAK)

Asquith, C. R. M.; Berger, B.-T.; Wan, J.; Bennett, J. M.; East, M. P.; Elkins, J. M.; Fedorov, O.; Godoi, P. H.; Hunter, D. M.; Knapp, S.; Mueller, S.; Wells, C. I.; Earp, H. S.; Willson, T. M.; Zuercher, W. J.

10.1101/376772 — cell biology — Posted on 2018-07-25

534 Consolidation alters motor sequence-specific distributed representations

Pinsard, B.; Boutin, A.; Gabitov, E.; Lungu, O.; Benali, H.; Doyon, J.

10.1101/376053 — neuroscience — Posted on 2018-07-25

535 Identification of Significant Computational Building Blocks through Comprehensive Investigation of NGS Secondary Analysis Methods

Vasimuddin, M.; Misra, S.; Aluru, S.

10.1101/301903 — genomics — Posted on 2018-07-25

536 Arginine to glutamine mutation in olfactomedin-like 3 (OLFML3) is a candidate for severe goniodysgenesis and glaucoma in the Border Collie dog breed.

Pugh, C. A.; Farrell, L. L.; Carlisle, A. J.; Bush, S. J.; Trejo-Reveles, V.; Matika, O.; de Kloet, A.; Walsh, C.; Bishop, S. C.; Prendergast, J. G.; Schoenebeck, J. J.; Rainger, J.; Summers, K. M.

10.1101/321406 — genetics — Posted on 2018-07-25

537 Attentional Bias Modification is associated with fMRI Response towards Negative Stimuli in Residual Depression: A Randomized Controlled Trial

Hilland, E.; Landro, N. I.; Harmer, C.; Browning, M.; Maglanoc, L. A.; Jonassen, R.

10.1101/322842 — clinical trials — Posted on 2018-07-25

538 Short-term plasticity of the human adult visual cortex measured with 7T BOLD

Binda, P.; Kurzawski, J. W.; Lunghi, C.; Biagi, L.; Tosetti, M.; Morrone, M. C.

10.1101/323741 — neuroscience — Posted on 2018-07-25

539 Cofactors revisited - predicting the impact of flavoprotein-related diseases on a genome scale

Wegrzyn, A. B.; Stolle, S.; Rienksma, R. A.; Martins dos Santos, V. A. P.; Bakker, B. M.; Suarez-Diez, M.

10.1101/343624 — systems biology — Posted on 2018-07-25

540 Unified Analysis of Global and Focal Aspects of Absence Epilepsy via Neural Field Theory of the Corticothalamic System

Yang, D.-P.; Robinson, P. A.

10.1101/339366 — neuroscience — Posted on 2018-07-25

541 Optogenetic silencing of immature and mature neurons in dentate gyrus to assess their roles in memory discriminations

van Dijk, M. T.; Yu, Z. A.; Lim, Y.; Hen, R.; Fenton, A. A.

10.1101/335992 — neuroscience — Posted on 2018-07-25

542 A comprehensive anatomical map of the peripheral octopaminergic/tyraminergic system of Drosophila melanogaster

Pauls, D.; Blechschmidt, C.; Frantzmann, F.; el Jundi, B.; Selcho, M.

10.1101/368803 — neuroscience — Posted on 2018-07-25

543 Improving the diagnostic yield of exome-sequencing, by predicting gene-phenotype associations using large-scale gene expression analysis

Deelen, P.; van Dam, S.; Herkert, J. C.; Karjalainen, J. M.; Brugge, H.; Abbott, K. M.; van Diemen, C. C.; van der Zwaag, P. A.; Gerkes, E. H.; Folkertsma, P.; Gillett, T.; van der Velde, K. J.; Kanninga, R.; van den Akker, P.; Jan, S. Z.; Hoorntje, E. T.; te Rijdt, W. P.; Vos, Y. J.; Jongbloed, J. D. H.; van Ravenswaaij-Arts, C. M. A.; Sinke, R.; Sikkema-Raddatz, B.; Kerstjens-Frederikse, W. S.; Swertz, M. A.; Franke, L.

10.1101/375766 — genetics — Posted on 2018-07-25

544 Adaptation of Bacillus subtilis upon interaction with Setophoma terrestris results in loss of surfactin and plipastatin production

Albarracin Orio, A. G.; Tobares, R. A.; Petras, D.; Sayago, P.; Juncosa, F.; Dorrestein, P.; Smania, A. M.; Ducasse, D.

10.1101/376590 — microbiology — Posted on 2018-07-25

545 Identification of evolutionarily conserved virulence factor by selective pressure analysis of Streptococcus pneumoniae

Yamaguchi, M.; Goto, K.; Hirose, Y.; Yamaguchi, Y.; Sumitomo, T.; Nakata, M.; Nakano, K.; Kawabata, S.

10.1101/356212 — microbiology — Posted on 2018-07-25

546 Tracking key virulence loci encoding aerobactin and salmochelin siderophore synthesis in Klebsiella pneumoniae

Lam, M. M. C.; Wyres, K. L.; Judd, L. M.; Wick, R. R.; Jenney, A.; Brisse, S.; Holt, K. E.

10.1101/376236 — genomics — Posted on 2018-07-25

547 Persistent Gamma Spiking in Non-Sensory Fast-Spiking Cells Predicts Perceptual Success

Shin, H.; Moore, C. I.

10.1101/374314 — neuroscience — Posted on 2018-07-25

548 A retrieval-counterconditioning procedure diminishes reinstatement of appetitive memories in humans

Gera, R.; Barak, S.; Schonberg, T.

10.1101/376392 — neuroscience — Posted on 2018-07-25

549 An orderly single-trial organization of population dynamics in premotor cortex predicts behavioral variability

Wei, Z.; Inagaki, H.; Li, N.; Svoboda, K.; Druckmann, S.

10.1101/376830 — neuroscience — Posted on 2018-07-25

550 Body mass aging trajectory is modulated by environmental conditions but independent of lifespan

Briga, M.; Jimeno, B.; Verhulst, S.

10.1101/376327 — ecology — Posted on 2018-07-25

551 Metagenomic screening of global microbiomes identifies pathogen-enriched environments

Li, X.

10.1101/376855 — ecology — Posted on 2018-07-25

552 Joint Speed Discrimination and Augmentation For Prosthesis Feedback

Earley, E. J.; Johnson, R. E.; Hargrove, L. J.; Sensinger, J. W.

10.1101/376574 — neuroscience — Posted on 2018-07-25

553 Fast-backward replay of sequentially memorized items in humans

Huang, Q.; Jia, J.; Han, Q.; Luo, H.

10.1101/376202 — neuroscience — Posted on 2018-07-25

554 Molecular layer interneurons shape the spike activity of cerebellar Purkinje cells

Brown, A. M.; Arancillo, M.; Lin, T.; Catt, D. R.; Zhou, J.; Lackey, E. P.; Stay, T. L.; Zuo, Z.; White, J. J.; Sillitoe, R. V.

10.1101/376517 — neuroscience — Posted on 2018-07-25

555 Temporal Small RNA Expression Profiling Under Drought Reveals a Potential Regulatory Role of snoRNAs in Drought Responses of Maize

Zheng, J.; Zeng, E.; Du, Y.; Hu, Y.; He, C.; Jiao, Z.; Wang, K.; Li, W.; Ludens, M.; Wang, H.; White, F. F.; Fu, J.; Wang, G.; Liu, S.

10.1101/376004 — genomics — Posted on 2018-07-25

556 Comparative genomics-first approach to understand diversification of secondary metabolite biosynthetic pathways in symbiotic dinoflagellates

Beedessee, G.; Hisata, K.; C. Roy, M.; Van Dolah, F.; Satoh, N.; Shoguchi, E.

10.1101/376251 — genomics — Posted on 2018-07-25

557 Expression profile analysis of circular RNAs in essential hypertension by microarray and bioinformatics.

Bao, X.; He, X.; Zheng, S.; Luo, Y.; Gu, T.; Tan, R.; Sun, J.; Zhao, J.; Zhang, L.

10.1101/376178 — genetics — Posted on 2018-07-25

558 Genetics & the Geography of Health, Behavior, and Attainment

Belsky, D. W.; Caspi, A.; Arseneault, L.; Corcoran, D.; Domingue, B. W.; Mullan Harris, K.; Houts, R.; Mill, J.; Moffitt, T. E.; Prinz, J.; Sugden, K.; Wertz, J.; Williams, B.; Odgers, C.

10.1101/376897 — genetics — Posted on 2018-07-25

559 A subfunctionalization epistasis model to evaluate homeologous gene interactions in allopolyploid wheat

Santantonio, N.; Jannink, J.-L.; Sorrells, M.

10.1101/376731 — genetics — Posted on 2018-07-25

560 Extreme genetic structure and dynamic range evolution in a montane passerine bird: implications for tropical diversification

Cadena, D.; Perez-Eman, J. L.; Cuervo, A. M. E.; Cespedes, L. N.; Epperly, K. L.; Klicka, J. T.

10.1101/376681 — evolutionary biology — Posted on 2018-07-25

561 Cardiac myocyte microtissue aggregates broadcast local field potentials

Serruya, M. D.; Das, S.; Katiyar, K. S.; Struzyna, L.; Burrell, J. C.; Cullen, D. K.

10.1101/376418 — bioengineering — Posted on 2018-07-25

562 Does the interaction between partnership status and average progesterone level reliably predict women’s preferences for facial masculinity? Comment on Marcinkowska et al. (2018)

DeBruine, L. M.; Hahn, A.; Jones, B.

10.1101/376350 — animal behavior and cognition — Posted on 2018-07-25

563 High-density extracellular probes reveal dendritic backpropagation and facilitate neuron classification

Jia, X.; Siegle, J.; Bennett, C.; Gale, S.; Denman, D.; Koch, C.; Olsen, S.

10.1101/376863 — neuroscience — Posted on 2018-07-25

564 Substantia nigra dopamine neurons evoke a delayed excitation in lateral dorsal striatal cholinergic interneurons via glutamate cotransmission

Chuhma, N.; Mingote, S.; Yetnikoff, L.; Kalmbach, A.; Ma, T.; Ztaou, S.; Sienna, A.-C.; Tepler, S.; Poulin, J.-F.; Ansorge, M.; Awatramani, R.; Kang, U. J.; Rayport, S.

10.1101/377150 — neuroscience — Posted on 2018-07-25

565 Absence of GdX/UBL4A protects against inflammatory bowel diseases by regulating NF-κB signaling in DCs and macrophages

Liu, C.; Zhou, Y.; Li, M.; Wang, Y.; Yang, L.; Yang, S.; Feng, Y.; Wang, Y.; Wang, Y.; Ren, F.; Li, J.; Dong, Z.; Chin, Y. E.; Fu, X.; Wu, L.; Chang, Z.

10.1101/376103 — immunology — Posted on 2018-07-25

566 Divergent receptor proteins confer responses to different karrikins in two ephemeral weeds

Sun, Y. K.; Scaffidi, A.; Yao, J.; Melville, K.; Smith, S. M.; Flematti, G. R.; Waters, M. T.

10.1101/376939 — plant biology — Posted on 2018-07-25

567 Cell-type specific patterned stimulus-independent neuronal activity in the Drosophila visual system during synapse formation

Akin, O.; Bajar, B. T.; Keles, M. F.; Frye, M. A.; Zipursky, S. L.

10.1101/376871 — neuroscience — Posted on 2018-07-25

568 Multiple roles of the non-structural protein 3 (nsP3) alphavirus unique domain (AUD) during Chikungunya virus genome replication and transcription

Gao, Y.; Goonawardane, N.; Tuplin, A.; Harris, M.

10.1101/377127 — microbiology — Posted on 2018-07-25

569 A comprehensive ensemble model for comparing the allosteric effect of ordered and disordered proteins

Zhang, L.; Li, M.; Liu, Z.

10.1101/377135 — biophysics — Posted on 2018-07-25

570 Methods for computing the maximum performance of computational models of fMRI responses

Lage-Castellanos, A.; Valente, G.; Formisano, E.; De Martino, F.

10.1101/377101 — neuroscience — Posted on 2018-07-25

571 Effects of endophyte infected tall fescue seed and red clover isoflavones on rumen microbial populations, fiber fermentation, and volatile fatty acids in vitro

Melchior, E. A.; Mulliniks, J. T.; Smith, J. K.; Bates, G. E.; Schneider, L. G.; McFarlane, Z. D.; Flythe, M. D.; Klotz, J. L.; Goodman, J. P.; Ji, H.; Myer, P.

10.1101/377085 — microbiology — Posted on 2018-07-25

572 How symbiosis and ecological context influence the variable expression of transgenerational wing induction upon fungal infection of aphids

Tan, W.-H.; Reyes, M. L.; Hoang, K. L.; Acevedo, T.; Leon, F.; Barbosa, J. D.; Gerardo, N. M.

10.1101/377077 — evolutionary biology — Posted on 2018-07-25

573 The effects and mechanism of peiminine-induced apoptosis in human hepatocellular carcinoma HepG2 cells

Chao, X.; Wang, G.; Tang, Y.; Dong, C.; Li, H.; Wang, B.; Wu, J.; Zhao, J.

10.1101/377069 — cancer biology — Posted on 2018-07-25

574 SGC-GAK-1: a chemical probe for cyclin G associated kinase (GAK)

10.1101/376772 — cell biology — Posted on 2018-07-25

575 In renal cell carcinoma, cancerous phenotypes linked to hypoxia-inducible factors are insensitive to the volatile anesthetic isoflurane

Sumi, C.; Matsuo, Y.; Iwai, T.; Bono, H.; Hirota, K.

10.1101/375311 — cancer biology — Posted on 2018-07-25

576 Accelerated FRET-PAINT Microscopy

Lee, J.; Park, S.; Hohng, S.

10.1101/376913 — biophysics — Posted on 2018-07-25

577 Altered trajectories in the dynamical repertoire of functional network states under psilocybin

Lord, L.-D.; Expert, P.; Atasoy, S.; Roseman, L.; Rapuano, K.; Lambiotte, R.; Nutt, D. J.; Deco, G.; Carhart-Harris, R.; Kringelbach, M. L.; Cabral, J.

10.1101/376491 — neuroscience — Posted on 2018-07-25

578 Assessing protein dynamics on low complexity single-strand DNA curtains

Schaub, J. M.; Zhang, H.; Soniat, M. M.; Finkelstein, I. J.

10.1101/376798 — biophysics — Posted on 2018-07-25

579 Yeast Chd1p remodels nucleosomes with unique DNA unwrapping and translocation dynamics

Kirk, J.; Lee, J. Y.; Lee, Y.; Shin, S.; Lee, E.; Song, J.-J.; Hohng, S.

10.1101/376806 — biophysics — Posted on 2018-07-25

580 An unbiased template of the Drosophila brain and ventral nerve cord

Bogovic, J. A.; Otsuna, H.; Heinrich, L.; Ito, M.; Jeter, J.; Meissner, G. W.; Nern, A.; Colonell, J.; Malkesman, O.; Ito, K.; Saalfeld, S.

10.1101/376384 — neuroscience — Posted on 2018-07-25

581 Frictional effects on RNA folding: Speed limit and Kramers turnover

Hori, N.; Denesyuk, N. A.; Thirumalai, D.

10.1101/376558 — biophysics — Posted on 2018-07-25

582 Targeting a Therapy-Resistant Cancer Cell State Using Masked Electrophiles as GPX4 Inhibitors

10.1101/376764 — biochemistry — Posted on 2018-07-24

583 A regulatory-sequence classifier with a neural network for genomic information processing

Onimaru, K.; Nishimura, O.; Kuraku, S.

10.1101/355974 — bioinformatics — Posted on 2018-07-24

584 A comparison of tests for quantifying sensory eye dominance

Bossi, M.; Hamm, L.; Dahlmann-Noor, A.; Dakin, S. C.

10.1101/219816 — neuroscience — Posted on 2018-07-24

585 Variation at the TRIM11 locus modifies Progressive Supranuclear Palsy phenotype

Jabbari, E.; John, W.; Tan, M. M.; Maryam, S.; Pittman, A.; Ferrari, R.; Mok, K. Y.; Zhang, D.; Reynolds, R. H.; de Silva, R.; Grimm, M.-J.; Respondek, G.; Muller, U.; Al-Sarraj, S.; Gentleman, S. M.; Lees, A. J.; Warner, T. T.; Hardy, J.; Revesz, T.; PROSPECT-UK consortium, ; Hoglinger, G. U.; Holton, J. L.; Ryten, M.; Morris, H. R.

10.1101/333195 — neuroscience — Posted on 2018-07-24

586 Transcription promotes the interaction of the FAcilitates Chromatin Transactions (FACT) complex with nucleosomes in S. cerevisiae

Howe, L. J.; Martin, B. J. E.; Chruscicki, A. T.

10.1101/376129 — genetics — Posted on 2018-07-24

587 The structural basis for activation of voltage sensor domains in an ion channel TPC1

Kintzer, A. F.; Green, E.; Dominik, P.; Bridges, M.; Armache, J.-p.; Deneka, D.; Kim, S.; Hubbell, W.; Kossiakoff, A.; Cheng, Y.; Stroud, R.

10.1101/373860 — biophysics — Posted on 2018-07-24

588 Excretion initiates walking in the cricket Gryllus bimaculatus

Naniwa, K.; Sugimoto, Y.; Osuka, K.; Aonuma, H.

10.1101/362723 — animal behavior and cognition — Posted on 2018-07-24

589 High-resolution regulatory maps connect cardiovascular risk variants to disease related pathways

Akerborg, O.; Spalinskas, R.; Pradhananga, S.; Anil, A.; Höjer, P.; Poujade, F.-A.; Folkersen, L.; Eriksson, P.; Sahlen, P.

10.1101/376699 — genomics — Posted on 2018-07-24

590 Exact distribution of divergence times under the birth-death-sampling model

Didier, G.

10.1101/376756 — evolutionary biology — Posted on 2018-07-24

591 Repeats Of Unusual Size in Plant Mitochondrial Genomes: Identification, Incidence and Evolution

Wynn, E. L.; Christensen, A. C.

10.1101/376020 — genomics — Posted on 2018-07-24

592 Discovery of psychoactive plant and mushroom alkaloids in ancient fungal cicada pathogens

10.1101/375105 — ecology — Posted on 2018-07-24

593 NAD consumption by PARP1 in response to DNA damage triggers metabolic shift critical for damaged cell survival

Murata, M.; Kong, X.; Moncada, E.; Chen, Y.; Wang, P. H.; Berns, M. W.; Yokomori, K.; Digman, M.

10.1101/375212 — cell biology — Posted on 2018-07-24

594 Regional collapsing of rare variation implicates specific genic regions in ALS

Gelfman, S.; Dugger, S. A.; Araujo Martins Moreno, C.; Ren, Z.; Wolock, C. J.; Shneider, N. A.; Phatnani, H.; Cirulli, E. T.; Lasseigne, B. N.; Harris, T.; Maniatis, T.; Rouleau, G. A.; Brown, R. H.; Gitler, A. D.; Myers, R. M.; Petrovski, S.; Allen, A.; Harms, M. B.; Goldstein, D. B.

10.1101/375774 — genetics — Posted on 2018-07-24

595 Permeation of cisplatin through the membranes of normal and cancer cells: a molecular dynamics study

Rivel, T.; Ramseyer, C.; Yesylevskyy, S.

10.1101/375980 — biophysics — Posted on 2018-07-24

596 The role of UV-B light on small RNA activity during grapevine berry development

Sunitha, S.; Loyola, R.; Alcalde, J. A.; Arce-Johnson, P.; Matus, T.; Rock, C. D.

10.1101/375998 — plant biology — Posted on 2018-07-24

597 The Relationship Between the Cervical Microbiome, HIV Status, and Pre-Cancerous Lesions

Klein, C.; Gonzalez, D.; Kahesa, C.; Mwaiselage, J.; Aluthge, N.; Fernando, S.; West, J. T.; Wood, C.; Angeletti, P. C.

10.1101/375592 — cancer biology — Posted on 2018-07-24

598 Bed nucleus of the stria terminalis mediates fear to ambiguous threat signals

Goode, T. D.; Ressler, R. L.; Acca, G. M.; Maren, S.

10.1101/376228 — neuroscience — Posted on 2018-07-24

599 APP-induced patterned neurodegeneration exacerbated by APOE4 in C. elegans

Sae-Lee, W.; Scott, L. L.; Encarnacion, A. J.; Kore, P.; Oyibo, L. O.; Ye, C.; Pierce, J. T.

10.1101/376095 — neuroscience — Posted on 2018-07-24

600 Temporal and spatial variation in distribution of fish environmental DNA in England’s largest lake

Lawson Handley, L. J.; Read, D.; Winfield, I.; Kimbell, H.; Johnson, H.; Li, J.; Hahn, C.; Blackman, R.; Wilcox, R.; Donnelly, R.; Szitenberg, A.; Haenfling, B.

10.1101/376400 — ecology — Posted on 2018-07-24

601 Developmental Regulation of an Organelle Tether Coordinates Mitochondrial Remodeling in Meiosis

Sawyer, E.; Joshi, P.; Berchowitz, L.; Unal, E.

10.1101/376509 — cell biology — Posted on 2018-07-24

602 Attention samples objects held in working memory at a theta rhythm

Peters, B.; Rahm, B.; Kaiser, J.; Bledowski, C.

10.1101/369652 — neuroscience — Posted on 2018-07-24

603 RNA polymerase mapping in plants identifies enhancers enriched in causal variants

Lozano, R.; Booth, G. T.; Omar, B. Y.; Li, B.; Buckler, E. S.; Lis, J. T.; Jannink, J.-L.; Pino Del Carpio, D.

10.1101/376640 — genomics — Posted on 2018-07-24

604 Gene-expression profiling of single cells from archival tissue with laser-capture microdissection and Smart-3SEQ

Foley, J. W.; Zhu, C.; Jolivet, P.; Zhu, S. X.; Lu, P.; Meaney, M. J.; West, R. B.

10.1101/207340 — genomics — Posted on 2018-07-24

605 New de novo assembly of the Atlantic bottlenose dolphin (Tursiops truncatus) improves genome completeness and provides haplotype phasing.

Martinez-Viaud, K. A.; Lawley, C. T.; Vergara, M. M.; Ben-Zvi, G.; Biniashvili, T.; Baruch, K.; St. Leger, J.; Le, J.; Natarjan, A.; Rivera, M.; Gillergan, N.; Jaeger, E.; Steffy, B.; Zimin, A.

10.1101/376301 — genomics — Posted on 2018-07-24

606 Improving the diagnostic yield of exome-sequencing, by predicting gene-phenotype associations using large-scale gene expression analysis

10.1101/375766 — genetics — Posted on 2018-07-24

607 Endoreduplication in Drosophila melanogaster progeny after exposure to acute γ-irradiation

Skorobagatko, D. A.; Mazilov, A. A.; Strashnyuk, V. Y.

10.1101/376145 — genetics — Posted on 2018-07-24

608 Combinatorial Genetic Control of Rpd3S through histone H3K4 and H3K36 Methylation in Budding Yeast

Meneghini, M. D.; Lee, K. Y.; Ranger, M.

10.1101/376046 — genetics — Posted on 2018-07-24

609 Evaluation of the antifibrotic potency by knocking down SPARC, CCR2 and SMAD3

Ding, W.; Pu, W.; Jiang, S.; Ma, Y.; Liu, Q.; Wu, W.; Chu, H.; Zou, H.; Jin, L.; Wang, J.; Zhou, X.

10.1101/376459 — molecular biology — Posted on 2018-07-24

610 RNA-DEPENDENT AMPLIFICATION OF MAMMALIAN mRNA ENCODING EXTRACELLULAR MATRIX COMPONENTS: IDENTIFICATION OF CHIMERIC RNA INTERMEDIATES FOR alpha1, beta1, AND gamma1 CHAINS OF LAMININ.

Volloch, V.; Rits, S.; Olsen, B. R.

10.1101/376293 — molecular biology — Posted on 2018-07-24

611 Transcription promotes the interaction of the FAcilitates Chromatin Transactions (FACT) complex with nucleosomes in S. cerevisiae

Howe, L. J.; Martin, B. J. E.; Chruscicki, A. T.

10.1101/376129 — genetics — Posted on 2018-07-24

612 The Drosophila chromodomain protein Kismet activates steroid hormone receptor transcription to govern axon pruning and memory in vivo.

Latcheva, N. K.; Viveiros, J. M.; Marenda, D. R.

10.1101/376335 — neuroscience — Posted on 2018-07-24

613 Neuronal population mechanisms of lightness perception

Ruff, D. A.; Brainard, D. H.; Cohen, M. R.

10.1101/294280 — neuroscience — Posted on 2018-07-24

614 Dengue virus infection changes Aedes aegypti oviposition olfactory preferences

Gaburro, J.; Paradkar, P. N.; Klein, M.; Bhatti, A.; Nahavandi, S.; Duchemin, J.-B.

10.1101/375972 — animal behavior and cognition — Posted on 2018-07-24

615 Interplay of primary sequence and RNA secondary structure in determining 5′ splice site choice

Tosto, F. A.; Shilo, A.; Rausch, J. W.; Le Grice, S. F. J.; Misteli, T.

10.1101/376343 — molecular biology — Posted on 2018-07-24

616 Rapid Eye Movement sleep deprivation of rat generates ROS in the hepatocytes and make them more susceptible to oxidative stress

Pandey, A.; Kar, S.

10.1101/375683 — molecular biology — Posted on 2018-07-24

617 The Site Frequency Spectrum under Finite and Time-Varying Mutation Rates

Melfi, A.; Viswanath, D.

10.1101/375907 — genetics — Posted on 2018-07-24

618 Temporal scaling of ageing as an adaptive strategy of Escherichia coli

Yang, Y.; Santos, A. L.; Xu, L.; Lotton, C.; Taddei, F.; Lindner, A. B.

10.1101/376566 — evolutionary biology — Posted on 2018-07-24

619 Antiviral Response by Plasmacytoid Dendritic Cells via Interferogenic Synapse with Infected Cells

Assil, S.; Coleon, S.; Decembre, E.; Sherry, L.; Allatif, O.; Webster, B.; Dreux, M.

10.1101/374496 — microbiology — Posted on 2018-07-24

620 Costimulation through TLR2 drives polyfunctional CD8+ T cell responses

Salerno, F.; Freen, J. J.; Guislain, A.; Wolkers, M.

10.1101/375840 — immunology — Posted on 2018-07-24

621 The Drosophila Cortactin Binding Protein 2 homolog, Nausicaa, regulates lamellipodial actin dynamics in a Cortactin-dependent manner.

O'Connell, M. E.; Sridharan, D.; Driscoll, T.; Krishnamurthy, I.; Perry, W. G.; Applewhite, D. A.

10.1101/376665 — cell biology — Posted on 2018-07-24

622 Cellular acidosis triggers MondoA transcriptional activity by driving mitochondrial ATP production

Ayer, D. E.; Wilde, B. R.; Ye, Z.

10.1101/376368 — cancer biology — Posted on 2018-07-24

623 Hierarchical multiscale simulation of DNA condensation

Sun, T.; Mirzoev, A.; Korolev, N.; Lyubartsev, A. P.; Nordenskioeld, L.

10.1101/375626 — biophysics — Posted on 2018-07-24

624 Guanabenz treatment improves Oculopharyngeal muscular dystrophy phenotype

Malerba, A.; Roth, F.; Harish, P.; Dhiab, J.; Lu-Nguyen, N.; Cappellari, O.; Jarmin, S.; Mahoudeau, A.; Ythier, V.; Laine, J.; Negroni, E.; Abgueguen, E.; Simonelig, M.; Guedat, P.; Mouly, V.; Butler-Browne, G.; Voisset, C.; Dickson, G.; Trollet, C.

10.1101/375758 — pathology — Posted on 2018-07-24

625 \"DoC-feeling\": a new behavioural tool to help diagnose the Minimally Conscious State.

Hermann, B.; Goudard, G.; Courcoux, K.; Valente, M.; Labat, S.; Despois, L.; Bourmaleau, J.; Richard Gillis, L.; Faugeras, F.; Demeret, S.; Sitt, J. D.; Naccache, L.; Rohaut, B.

10.1101/370775 — neuroscience — Posted on 2018-07-24

626 Developmental Regulation of an Organelle Tether Coordinates Mitochondrial Remodeling in Meiosis

Unal, E.; Sawyer, E.; Joshi, P.; Berchowitz, L.

10.1101/376509 — cell biology — Posted on 2018-07-24

627 Extracellular matrix regulates morphogenesis and function of ciliated sensory organs in Caenorhabditis elegans

Barr, M. M.; De Vore, D. M.; Knobel, K. M.; Nguyen, K. C. Q.; Hall, D. H.

10.1101/376152 — cell biology — Posted on 2018-07-24

628 Glucose intake hampers PKA-regulated HSP90 chaperone activity

Chen, Y.-C.; Jiang, P.-H.; Chen, H.-M.; Chen, C.-H.; Wang, Y.-T.; Chen, Y.-J.; Yu, C.-J.; Teng, S.-C.

10.1101/376186 — cell biology — Posted on 2018-07-24

629 Polycomb Group protein EZH2-mediated transcriptional repression of microRNA-338/-421 drives SPINK1-positive prostate cancer

Bhatia, V.; Yadav, A.; Tiwari, R.; Nigam, S.; Goel, S.; Carskadon, S.; Gupta, N.; Goel, A.; Palanisamy, N.; Ateeq, B.

10.1101/376277 — cancer biology — Posted on 2018-07-24

630 Integrated sequence and gene expression analysis of mouse models of breast cancer reveals critical events with human parallels

Rennhack, J.; Swiatnicki, M.; Zhang, Y.; Li, C.; Bylett, E.; Ross, C.; Szczepanek, K.; Hanrahan, W.; Jayatissa, M.; Hunter, K.; Andrechek, E.

10.1101/375154 — cancer biology — Posted on 2018-07-24

631 Cycling with blood flow restriction improves performance and muscle K+ regulation and blunts the effect of antioxidant infusion in humans

Christiansen, D.; Bangsbo, J.

10.1101/375881 — physiology — Posted on 2018-07-24

632 Are we overestimating the utility of hair glucocorticoids? A systematic review exploring the empirical evidence supporting hair glucocorticoids as a measure of stress

Kalliokoski, O.; Jellestad, F. K.; Murison, R.

10.1101/375667 — physiology — Posted on 2018-07-24

633 The Nonstructural Proteins 3 And 5 From Flavivirus Modulate Nuclear-Cytoplasmic Transport And Innate Immune Response Targeting Nuclear Proteins

Cervantes-Salazar, M.; Gutierrez-Escolano, A. L.; Reyes-Ruiz, J. M.; del Angel, R. M.

10.1101/375899 — molecular biology — Posted on 2018-07-24

634 Rapid eye movement sleep deprivation causes apoptotic cell-death of the hepatocytes in rat

Pandey, A.; Kumar, D.; Ray, G.; Kar, S.

10.1101/375717 — molecular biology — Posted on 2018-07-24

635 IL-2 Modulates Th2 cell Responses to Glucocorticoid: A Cause of Persistent Type 2 Inflammation?

Kanagalingam, T.; Vijeyakumaran, M.; Palikhe, N. S.; Solomon, L. A.; Vliagoftis, H.; Cameron, L.

10.1101/365783 — immunology — Posted on 2018-07-24

636 Polygenic predictors of age-related decline in cognitive ability

Ritchie, S. J.; Hill, W. D.; Marioni, R. E.; Davies, G.; Hagenaars, S. P.; Harris, S. E.; Cox, S. R.; Taylor, A. M.; Corley, J.; Pattie, A.; Redmond, P.; Starr, J. M.; Deary, I.

10.1101/375691 — genomics — Posted on 2018-07-24

637 Lactate dehydrogenases amplify reactive oxygen species in cancer cells in response to oxidative stimuli

Hu, X.; Wu, H.; Wang, Y.; Ying, M.

10.1101/376210 — cancer biology — Posted on 2018-07-24

638 Scedar: a scalable Python package for single-cell RNA-seq exploratory data analysis

Zhang, Y.; Taylor, D. M.

10.1101/375196 — bioinformatics — Posted on 2018-07-24

639 CorShrink : Empirical Bayes shrinkage estimation of correlations, with applications

Dey, K. K.; Stephens, M.

10.1101/368316 — genetics — Posted on 2018-07-24

640 High-density linkage map and QTLs for growth in snapper (Chrysophrys auratus)

Ashton, D. T.; Ritchie, P. A.; Wellenreuther, M.

10.1101/376012 — evolutionary biology — Posted on 2018-07-24

641 Gene body methylation is involved in coarse genome-wide adjustment of gene expression during acclimatization

Dixon, G. B.; Liao, Y.; Bay, L. K.; Matz, M. V.

10.1101/184457 — ecology — Posted on 2018-07-24

642 Basal Forebrain Deep Brain Stimulation Impacts the Regulation of Extracellular Vesicle Related Proteins in the Rat Brain

Li, W.; Montes, L. L.; Nair, J.; Dimanico, M.; Mazloum, R.; Hu, Z.; Scolari, B.; Denjel, J.; Zheilig, F.; Harvey, M.; Zhang, X.; Rainer, G.

10.1101/374256 — neuroscience — Posted on 2018-07-24

643 Developing a modern data workflow for evolving data

Yenni, G. M.; Christensen, E. M.; Bledsoe, E. K.; Supp, S. R.; Diaz, R. M.; White, E. P.; Ernest, S. K. M.

10.1101/344804 — ecology — Posted on 2018-07-24

644 Ectopic expression of Hoxb1 induces cardiac and craniofacial malformations

Zaffran, S.; Odelin, G.; Stefanovic, S.; Lescroart, F.; Etchevers, H. C.

10.1101/300368 — developmental biology — Posted on 2018-07-24

645 Distributed alpha networks underlie individual differences in memory performance

Cox, R.; Schapiro, A. C.; Stickgold, R.

10.1101/095430 — neuroscience — Posted on 2018-07-24

646 Physiological Significance of R-fMRI Indices: Can Functional Metrics Differentiate Structural Lesions (Brain Tumors)?

Fan, Z.; Chen, X.; Qi, Z.-X.; Li, L.; Lu, B.; Jiang, C.-L.; Zhu, R.-Q.; Chen, L.; Yan, C.-G.

10.1101/281352 — neuroscience — Posted on 2018-07-24

647 Natural variation in arsenic toxicity is explained by differences in branched chain amino acid catabolism

Zdraljevic, S.; Fox, B. W.; Strand, C.; Panda, O.; Tenjo-Castano, F. J.; Brady, S. C.; Crombie, T. A.; Doench, J. G.; Schroeder, F. C.; Andersen, E. C.

10.1101/373787 — genetics — Posted on 2018-07-24

648 Many rice genes are differentially spliced between roots and shoots but cytokinin has minimal effect on splicing

Freese, N. H.; Estrada, A. R.; Blakley, I. C.; Duan, J.; Loraine, A. E.

10.1101/293217 — molecular biology — Posted on 2018-07-24

649 A rationally designed mimotope library for profiling of the human IgM repertoire

Pashov, A. D.; Shivarov, V.; Hadzhieva, M.; Kostov, V.; Ferdinandov, D.; Heinz, K.-M.; Pashova, S.; Todorova, M.; Vassilev, T. L.; Kieber-Emmons, T.; Meza-Zepeda, L. A.; Hovig, E.

10.1101/308973 — immunology — Posted on 2018-07-24

650 Addressing Confounding Factors in Algal Phosphorus Limitation Experiments

Beck, W. S.; Hall, E. K.

10.1101/298281 — ecology — Posted on 2018-07-24

651 Effects of protein size, thermodynamic stability, and net charge on cotranslational folding on the ribosome

Farias-Rico, J. A.; Ruud Selin, F.; Myronidi, I.; Frühauf, M.; Von Heijne, G.

10.1101/303784 — biochemistry — Posted on 2018-07-24

652 On the molecular filters in cochlea transduction

Goussev, V.

10.1101/374363 — biophysics — Posted on 2018-07-24

653 Transfer learning with deep convolutional neural networks for classifying cellular morphological changes

Kensert, A.; Harrison, P. J.; Spjuth, O.

10.1101/345728 — bioinformatics — Posted on 2018-07-24

654 Scaling accurate genetic variant discovery to tens of thousands of samples

Poplin, R.; Ruano-Rubio, V.; DePristo, M. A.; Fennell, T. J.; Carneiro, M. O.; Van der Auwera, G. A.; Kling, D. E.; Gauthier, L. D.; Levy-Moonshine, A.; Roazen, D.; Shakir, K.; Thibault, J.; Chandran, S.; Whelan, C.; Lek, M.; Gabriel, S.; Daly, M. J.; Neale, B.; MacArthur, D. G.; Banks, E.

10.1101/201178 — genomics — Posted on 2018-07-24

655 Very low depth whole genome sequencing in complex trait association studies

Gilly, A.; Southam, L.; Suveges, D.; Kuchenbaecker, K.; Moore, R.; Melloni, G.; Hatzikotoulas, K.; Farmaki, A.-E.; Ritchie, G.; Schwartzentruber, J.; Danecek, P.; Kilian, B.; Pollard, M.; Ge, X.; Tsafantakis, E.; Dedoussis, G.; Zeggini, E.

10.1101/169789 — genetics — Posted on 2018-07-24

656 Emergence of Multidrug-Resistant Uropathogens harboring ESBL, Carbapenem, Aminoglycosides and AmpC resistant genes from Northern India

Gajamer, V. R.; Bhattacharjee, A.; Paul, D.; Ingti, B.; Sarkar, A.; Kapil, J.; Singh, A. K.; Pradhan, N.; Tiwari, H. K.

10.1101/375501 — microbiology — Posted on 2018-07-24

657 Rootstocks shape the rhizobiome: Rhizosphere and endosphere bacterial communities in the grafted tomato system

Poudel, R.; Jumpponen, A. M.; Kennelly, M.; Rivard, C.; Gomez-Montano, L.; Garrett, K.

10.1101/375444 — microbiology — Posted on 2018-07-24

658 Point of care influenza testing using Alere-i Influenza A & B assay: a practical assessment

Blackmore, T.; Taylor, J.; Kelly, M.; Buckley, J.; Corban, K.; Tan, C. E.; Balm, M.

10.1101/375493 — microbiology — Posted on 2018-07-24

659 Kipoi: accelerating the community exchange and reuse of predictive models for genomics

Avsec, Z.; Kreuzhuber, R.; Israeli, J.; Xu, N.; Cheng, J.; Shrikumar, A.; Banerjee, A.; Kim, D. S.; Urban, L.; Kundaje, A.; Stegle, O.; Gagneur, J.

10.1101/375345 — bioinformatics — Posted on 2018-07-24

660 Microfluidic study of effects of flow velocity and nutrient concentration on biofilm accumulation and adhesive strength in microchannels

Liu, N.; Skauge, T.; Landa-Marban, D.; Hovland, B.; Thorbjornsen, B.; Radu, F. A.; Vik, B. F.; Baumann, T.; Bodtker, G.

10.1101/375451 — bioengineering — Posted on 2018-07-24

661 A Ubiquitin-Binding Domain that Does Not Bind Ubiquitin

Lim, M.; Newman, J. A.; Williams, H. L.; Aitkenhead, H.; Gileadi, O.; Svejstrup, J.

10.1101/375832 — biochemistry — Posted on 2018-07-24

662 Examination of Australian Streptococcus suis Isolates From Clinically Affected Pigs in a Global Context and the Genomic Characterisation of ST1 as a Predictor of Virulence

O'Dea, M. A.; Laird, T.; Abraham, R.; Jordan, D.; Lugsomya, K.; Fitt, L.; Gotschalk, M.; Truswell, A.; Abraham, S.

10.1101/375543 — microbiology — Posted on 2018-07-24

663 DNA Methylation by Restriction Modification Systems Affects the Global Transcriptome Profile in Borrelia burgdorferi

Casselli, T.; Tourand, Y.; Scheidegger, A.; Arnold, W.; Proulx, A.; Stevenson, B.; Brissette, C. A.

10.1101/375352 — microbiology — Posted on 2018-07-24

664 Refined detection and phasing of structural aberrations in pediatric acute lymphoblastic leukemia by linked-read whole genome sequencing

Nordlund, J.; Marincevic-Zuniga, Y.; Cavelier, L.; Raine, A.; Martin, T.; Lundmark, A.; Abrahamsson, J.; Noren-Nystrom, U.; Lonnerholm, G.; Syvanen, A.-C.

10.1101/375659 — genomics — Posted on 2018-07-24

665 Modeling functional enrichment improves polygenic prediction accuracy in UK Biobank and 23andMe data sets

Marquez-Luna, C.; Gazal, S.; Loh, P.-R.; Furlotte, N.; Auton, A.; 23andMe Research Team, ; Price, A. L.

10.1101/375337 — genetics — Posted on 2018-07-24

666 Recombination suppression in heterozygotes for a pericentric inversion induces interchromosomal effect on crossovers in Arabidopsis

Termolino, P.; Falque, M.; Cremona, G.; Paparo, R.; Ederveen, A.; Martin, O.; Consiglio, F. M.; Conicella, C.

10.1101/376376 — genetics — Posted on 2018-07-24

667 High Genetic Potential for Proteolytic Decomposition in Northern Peatland Ecosystems

Graham, E. B.; Yang, F.; Bell, S.; Hofmockel, K.

10.1101/375428 — ecology — Posted on 2018-07-24

668 The Effect of Phylogenetic Uncertainty and Imputation on EDGE Scores

Weedop, K. B.; Mooers, A. O.; Tucker, C. M.; Pearse, W. D.

10.1101/375246 — zoology — Posted on 2018-07-24

669 Activation of 2,4-diaminoquinazoline in Mycobacterium tuberculosis by Rv3161c, a putative dioxygenase

Melief, E.; Bonnett, S. A.; Zuniga, E. S.; Parish, T.

10.1101/375519 — microbiology — Posted on 2018-07-24

670 Conjugation dynamics of self-transmissible and mobilisable plasmids into E. coli O157:H7 on Arabidopsis thaliana rosettes

Remus-Emsermann, M. N.; Pelludat, C.; Gisler, P.; Drissner, D.

10.1101/375402 — microbiology — Posted on 2018-07-24

671 A new actin depolymerase: a catch bond Myosin 1 motor

Pernier, J.; Kusters, R.; Bousquet, H.; Lagny, T.; Morchain, A.; Joanny, J.-F.; Bassereau, P.; Coudrier, E.

10.1101/375923 — biophysics — Posted on 2018-07-24

672 A method for genome editing in the anaerobic magnetotactic bacterium Desulfovibrio magneticus RS-1

Grant, C. R.; Rahn-Lee, L.; LeGault, K. N.; Komeili, A.

10.1101/375410 — microbiology — Posted on 2018-07-24

673 CexE Is A Virulence Factor of Citrobacter rodentium And Present In Enteric Pathogens Of Humans

Rivas, Z. P.; McCormack, R.; Adkins, B.; Munson, G. P.

10.1101/375527 — microbiology — Posted on 2018-07-24

674 Rewiring of transcription factor binding in differentiating human embryonic stem cells is constrained by DNA sequence repeat symmetry

Goldshtein, M.; Lukatsky, D. B.

10.1101/375956 — genomics — Posted on 2018-07-24

675 Experimental demonstration that screening can enable the environmental recruitment of a defensive microbiome

Innocent, T.; Holmes, N.; Al Bassam, M.; Schiott, M.; Scheuring, I.; Wilkinson, B.; Hutchings, M. I.; Boomsma, J. J.; Yu, D.

10.1101/375634 — evolutionary biology — Posted on 2018-07-24

676 LRScaf: Improving Draft Genomes Using Long Noisy Reads

Qin, M.; Wu, S.; Li, A.; Zhao, F.; Feng, H.; Ding, L.; Chang, Y.; Ruan, J.

10.1101/374868 — bioinformatics — Posted on 2018-07-24

677 How exerting control over outcomes affects the neural coding of tasks and outcomes

Wisniewski, D.; Forstmann, B.; Brass, M.

10.1101/375642 — neuroscience — Posted on 2018-07-24

678 Virtual navigation tested on a mobile app is predictive of real-world wayfinding navigation performance

Coutrot, A.; Schmidt, S.; Coutrot, L.; Pittman, J.; Hong, L.; Wiener, J. M.; Holscher, C.; Dalton, R. C.; Hornberger, M.; Spiers, H. J.

10.1101/305433 — neuroscience — Posted on 2018-07-24

679 Task-evoked pupil responses reflect internal belief states

Colizoli, O.; de Gee, J. W.; Urai, A.; Donner, T. H.

10.1101/275776 — neuroscience — Posted on 2018-07-24

680 Twenty-Five Cohorts of Major Depressive Disorder in China: Evidence for Reduced but not Enhanced Default Mode Network Functional Connectivity

Yan, C.-G.; Chen, X.; Li, L.; Castellanos, F. X.; Bai, T.-J.; Bo, Q.-J.; Chen, G.-M.; Chen, N.-X.; Chen, W.; Cheng, C.; Cheng, Y.-Q.; Cui, X.-L.; Duan, J.; Fang, Y.-R.; Gong, Q.-Y.; Guo, W.-B.; Hou, Z.-H.; Hu, L.; Kuang, L.; Li, F.; Li, K.-M.; Li, T.; Liu, Y.-S.; Liu, Z.-N.; Long, Y.-C.; Luo, Q.-H.; Meng, H.-Q.; Peng, D.-H.; Qiu, H.-T.; Qiu, J.; Shen, Y.-D.; Shi, Y.-S.; Si, T.-M.; Wang, C.-Y.; Wang, F.; Wang, K.; Wang, L.; Wang, X.; Wang, Y.; Wu, X.-P.; Wu, X.-R.; Xie, G.-R.; Xie, H.-Y.; Xie, P.; Xu, X.-F.; Yang, H.; Yang, J.; Yao, J.-S.; Yao, S.-Q.; Yin, Y.-Y.; Yuan, Y.-G.; Zhang, A.-X.; Zhan

10.1101/321745 — neuroscience — Posted on 2018-07-24

681 Early life stress impairs postnatal oligodendrogenesis and adult behavior through activity-dependent mechanisms

TEISSIER, A.; Le Magueresse, C.; Andrade-da-Costa, B. L. d. S.; Olusakin, J.; de Stasi, A.; Bacci, A.; Kawasawa, Y. I.; Vaidya, V. V.; Gaspar, P.

10.1101/369660 — animal behavior and cognition — Posted on 2018-07-24

682 Robust detection of tandem repeat expansions from long DNA reads

Mitsuhashi, S.; Frith, M. C.; Mizuguchi, T.; Miyatake, S.; Toyota, T.; Adachi, H.; Oma, Y.; Kino, Y.; Mitsuhashi, H.; Matsumoto, N.

10.1101/356931 — genetics — Posted on 2018-07-24

683 AKT regulates mitotic progression of mammalian cells by phosphorylating MASTL

Reshi, I.; Nisa, M. U.; Farooq, U.; Gillani, S. Q.; Bhat, S. A.; Sarwar, Z.; Fazili, K.; Andrabi, S.

10.1101/375618 — cancer biology — Posted on 2018-07-24

684 A generic widefield topographical and chemical photopatterning method for hydrogels.

Pasturel, A.; Strale, P.-O.; Studer, V.

10.1101/370882 — bioengineering — Posted on 2018-07-24

685 Inhibition of proteasomal degradation rescues a pathogenic variant of mitochondrial Respiratory chain assembly 1 factor

Mohanraj, K.; Wasilewski, M.; Beninca, C.; Cysewski, D.; Poznanski, J.; Sakowska, P.; Deckers, M.; Dennerlein, S.; Fernandez-Vizarra, E.; Rehling, P.; Dadlez, M.; Zeviani, M.; Chacinska, A.

10.1101/375725 — biochemistry — Posted on 2018-07-24

686 A conserved mechanism for meiotic chromosome organization through self-assembly of a filamentous chromosome axis core

West, A. M. V.; Rosenberg, S. C.; Ur, S. N.; Lehmer, M. K.; Ye, Q.; Hagemann, G.; Caballero, I.; Uson, I.; Herzog, F.; Corbett, K. D.

10.1101/375220 — biochemistry — Posted on 2018-07-24

687 High-level expression of STING restricts susceptibility to HBV by mediating type III IFN induction

Dansako, H.; Imai, H.; Ueda, Y.; Satoh, S.; Shimotohno, K.; Kato, N.

10.1101/375782 — microbiology — Posted on 2018-07-24

688 Vertical transmission of Zika virus from orally infected Aedes aegypti produces infectious adult progeny.

Comeau, G.; Zinna, R. A.; Scott, T.; Ernst, K.; Walker, K.; Carriere, Y.; Riehle, M. A.

10.1101/375964 — epidemiology — Posted on 2018-07-24

689 Early genome activation in Drosophila is extensive with an initial tendency for aborted transcripts and retained introns

Kwasnieski, J. C.; Orr-Weaver, T. L.; Bartel, D. P.

10.1101/375204 — developmental biology — Posted on 2018-07-24

690 Lysosome exocytosis is required for mitosis

Nugues, C.; Helassa, N.; Haynes, L.

10.1101/375816 — cell biology — Posted on 2018-07-24

691 Lipids are the preferred substrate of the protist Naegleria gruberi, relative of a human brain pathogen

Bexkens, M.; Zimorski, V.; Sarink, M. J.; Wienk, H.; Brouwers, J. F.; De Jonckheere, J. F.; Martin, W. F.; Opperdoes, F. R.; van Hellemond, J. J.; Tielens, A. G. M.

10.1101/370890 — biochemistry — Posted on 2018-07-24

692 Long-range memory of growth and cycle progression correlates cell cycles in lineage trees

Kuchen, E. E.; Becker, N.; Claudino, N.; Hofer, T.

10.1101/373258 — systems biology — Posted on 2018-07-24

693 Diallel Analysis for Morphological and Biochemical Traits in Tomato Cultivated Under the Influence of Tomato Leaf Curl Virus

Kaushik, P.; Dhaliwal, M. S.

10.1101/371013 — plant biology — Posted on 2018-07-24

694 Formulation, Evaluation and Antibacterial Efficiency of water-based herbal Hand Sanitizer Gel

Balkrishna, A.; Ghosh, S.; Yadaw, G.; Sharma, K.; Ghosh, S.; Joshi, S.

10.1101/373928 — microbiology — Posted on 2018-07-24

695 Multiscale analysis of 3D nuclear morphology reveals new insights into growth plate organization in mice

Rubin, S.; Stern, T.; Villoutreix, P.; Stegmaier, J.; Addadi, Y.; Zelzer, E.

10.1101/375949 — developmental biology — Posted on 2018-07-24

696 Stochastic temporal timing for intracellular events to cross dynamically fluctuating thresholds

Qiu, B.; Zhang, J.; Zhou, T.

10.1101/375915 — systems biology — Posted on 2018-07-24

697 Balance of Mechanical Forces Drives Endothelial Gap Formation and May Facilitate Cancer and Immune-Cell Extravasation

Escribano, J.; Chen, M.; Moeendarbary, E.; Cao, X.; Shenoy, V.; Garcia-Aznar, J. M.; Kamm, R.; Spill, F.

10.1101/375931 — bioengineering — Posted on 2018-07-24

698 A genome-wide screen identifies genes in rhizosphere-associated Pseudomonas required to evade plant defenses

Liu, Z.; Beskrovnaya, P.; Melnyk, R. A.; Hossain, S. S.; Khorasani, S.; O'Sullivan, L. R.; Wiesmann, C. L.; Bush, J.; Richard, J. D.; Haney, C. H.

10.1101/375568 — microbiology — Posted on 2018-07-24

699 Influence of food and Nosema ceranae infection on the gut microbiota of Apis cerana workers

Huang, S. K.; Ye, K. T.; Huang, W.-F.; Ying, B.; Su, X.; Lin, L. H.; Li, J. H.; Chen, Y. P.; Li, J. L.; Bao, X.; Hu, J.

10.1101/375576 — microbiology — Posted on 2018-07-24

700 Fungal polysaccharopeptides reduce obesity by richness of specific microbiota and modulation of lipid metabolism

Li, X.; Chen, P.; Zhang, P.; Chang, Y.; Cui, M.; Duan, J. y.

10.1101/375584 — microbiology — Posted on 2018-07-24

701 Specific activation of HIV-1 from monocytic reservoir cells by bromodomain inhibitor in humanized mice in vivo

Su, L.; Li, G.; Zhang, Z.; Reszka-Blanco, N. J.; Li, F.; Chi, L.; Ma, J.; Jeffrey, J.; Cheng, L.

10.1101/375535 — immunology — Posted on 2018-07-24

702 MEG sensor patterns reflect perceptual but not categorical similarity of animate and inanimate objects

Proklova, D.; Kaiser, D.; Peelen, M. V.

10.1101/238584 — neuroscience — Posted on 2018-07-24

703 Avoiding sedentary behaviors requires more cortical resources than avoiding physical activity: An EEG study

Cheval, B.; Tipura, E.; Burra, N.; Frossard, J.; Chanal, J.; Orsholits, D.; Radel, R.; Boisgontier, M. P.

10.1101/277988 — neuroscience — Posted on 2018-07-24

704 A reference haplotype panel for genome-wide imputation of short tandem repeats

Saini, S.; Mitra, I.; Mousavi, N.; Feupe Fotsing, S.; Gymrek, M.

10.1101/277673 — genomics — Posted on 2018-07-24

705 Clinical Impact and Cost-Effectiveness of a 176-Condition Expanded Carrier Screen

Beauchamp, K. A.; Johansen Taber, K. A.; Muzzey, D.

10.1101/372334 — genetics — Posted on 2018-07-24

Choy, C. T.; Wong, C. H.; Chan, S. L.

10.1101/362848 — cancer biology — Posted on 2018-07-24

707 FMRIPrep: a robust preprocessing pipeline for functional MRI

Esteban, O.; Markiewicz, C.; Blair, R. W.; Moodie, C.; Isik, A. I.; Erramuzpe Aliaga, A.; Kent, J.; Goncalves, M.; DuPre, E.; Snyder, M.; Oya, H.; Ghosh, S.; Wright, J.; Durnez, J.; Poldrack, R.; Gorgolewski, K. J.

10.1101/306951 — bioinformatics — Posted on 2018-07-24

708 A Metagenomic Comparison of Tracheal Aspirate and Mini-Bronchial Alveolar Lavage for Assessment of Respiratory Microbiota

Kalantar, K.; Moazed, F.; Christenson, S.; Wilson, J.; Deiss, T.; Belzer, A.; Vessell, K.; Jauregui, A.; Boulourchi, S.; DeRisi, J. L.; Calfee, C.; Langelier, C.

10.1101/375360 — microbiology — Posted on 2018-07-24

709 A screen for gene regulators encoded by Kaposi’s sarcoma-associated herpesvirus uncovers a novel role for the ORF42 protein in regulating the production of cellular and viral proteins

Butnaru, M.; Rivas, H. G.; Gaglia, M. M.

10.1101/375386 — microbiology — Posted on 2018-07-24

710 Climate, habitat, and geographic range overlap drive plumage evolution

Miller, E. T.; Leighton, G. M.; Freeman, B. G.; Lees, A. C.; Ligon, R. A.

10.1101/375261 — evolutionary biology — Posted on 2018-07-24

711 Diallel Analysis for Morphological and Biochemical Traits in Tomato Cultivated Under the Influence of Tomato Leaf Curl Virus

Kaushik, P.; Dhaliwal, M. S.

10.1101/371013 — plant biology — Posted on 2018-07-23

712 Determining the Mutation Bias of Favipiravir in Influenza Using Next-generation Sequencing

Goldhill, D.; Langat, P.; Xie, H.; Galiano, M.; Miah, S.; Kellam, P.; Zambon, M.; Lackenby, A.; Barclay, W. S.

10.1101/375378 — microbiology — Posted on 2018-07-23

713 Development of a vanillate biosensor for the vanillin biosynthesis pathway in E. coli

Kunjapur, A. M.; Prather, K. L. J.

10.1101/375287 — synthetic biology — Posted on 2018-07-23

714 Dynamic recruitment of single RNAs to processing bodies depends on RNA functionality

Pitchiaya, S.; Mourao, M. D. A.; Jalihal, A. P.; Xiao, L.; Jiang, X.; Chinnaiyan, A. M.; Schnell, S.; Walter, N. G.

10.1101/375295 — molecular biology — Posted on 2018-07-23

715 CHD8 Regulates Cellular Homeostasis and Neuronal Function Genes Across Multiple Models of CHD8 Haploinsufficiency

Wade, A. A.; Lim, K. J.; Catta-Preta, R.; Nord, A. S.

10.1101/375238 — neuroscience — Posted on 2018-07-23

716 Challenges and perspectives of functional sodium imaging (fNaI)

Gandini Wheeler-Kingshott, C.; Reimer, F.; Palesi, F.; Ricciardi, A.; Castellazzi, G.; Golay, X.; Prados, F.; Solanky, B.; D'Angelo, E.

10.1101/375055 — neuroscience — Posted on 2018-07-23

717 A natural killer cell gene signature predicts melanoma patient survival

Cursons, J.; Souza Fonseca Guimaraes, F.; Anderson, A.; Foroutan, M.; Hediyeh Zadeh, S.; Behren, A.; Huntington, N. D.; Davis, M. J.

10.1101/375253 — cancer biology — Posted on 2018-07-23

718 DECODER: A probabilistic approach to integrate big data reveals mitochondrial Complex I as a potential therapeutic target for Alzheimer’s disease

Celik, S.; Russell, J. C.; Pestana, C. R.; Lee, T.-I.; Mukherjee, S.; Crane, P. K.; Keene, D.; Bobb, J. F.; Kaeberlein, M.; Lee, S.-I.

10.1101/302737 — systems biology — Posted on 2018-07-23

719 Predicting division planes of three-dimensional cells by soap-film minimization

Martinez, P.; Allsman, L.; Brakke, K. A.; Hoyt, C.; Hayes, J.; Liang, H.; Neher, W.; Rui, Y.; Roberts, A.; Moradifam, A.; Goldstein, B.; Anderson, C.; Rasmussen, C. G.

10.1101/199885 — plant biology — Posted on 2018-07-23

720 Combining multiple functional annotation tools increases coverage of metabolic annotation

Griesemer, M.; Kimbrel, J. A.; Zhou, C. E.; Navid, A.; D'haeseleer, P.

10.1101/160887 — bioinformatics — Posted on 2018-07-23

721 Scedar: a scalable Python package for single-cell RNA-seq exploratory data analysis

Zhang, Y.; Taylor, D. M.

10.1101/375196 — bioinformatics — Posted on 2018-07-23

722 The limitations of correlation-based inference in complex virus-microbe communities

Coenen, A. R.; Weitz, J. S.

10.1101/176628 — ecology — Posted on 2018-07-23

723 Cryo-EM Reveals Ligand Induced Allostery Underlying InsP3R Channel Gating

Fan, G.; Baker, M. R.; Wang, Z.; Serysheva, A. B.; Ludtke, S. J.; Baker, M. L.; Serysheva, I. I.

10.1101/374041 — biophysics — Posted on 2018-07-23

724 Transient DNA Binding Induces RNA Polymerase II Compartmentalization During Herpesviral Infection Distinct From Phase Separation

McSwiggen, D. T.; Hansen, A. S.; Marie-Nelly, H.; Teves, S.; Heckert, A.; Dugast-Darzacq, C.; Hao, Y.; Umemoto, K. K.; Tjian, R.; Darzacq, X.

10.1101/375071 — bioinformatics — Posted on 2018-07-23

725 Expression of the Phosphatase Ppef2 Controls Survival and Function of CD8+ Dendritic Cells

Brocker, T.; Zwick, M.; Ried, C.; Grosse, L.; Simon, C.; Stutte, S.; Ulas, T.; Schulze, J. L.; Bernhard, C.; Buchholz, V. R.; Cho, Y.-L.; Busch, D.

10.1101/374652 — immunology — Posted on 2018-07-23

726 Survival of the frequent at finite population size and mutation rate: filing the gap between quasispecies and monomorphic regimes

Khatri, B. S.

10.1101/375147 — evolutionary biology — Posted on 2018-07-23

727 Dynamic functional connectivity changes in dementia with Lewy bodies and Alzheimer’s disease

Schumacher, J.; Peraza, L. R.; Firbank, M.; Thomas, A. J.; Kaiser, M.; Gallagher, P.; O'Brien, J. T.; Blamire, A. M.; Taylor, J.-P.

10.1101/374538 — neuroscience — Posted on 2018-07-23

728 Using eDNA to biomonitor the fish community in a tropical oligotrophic lake

Valdez-Moreno, M.; Ivanova, N. V.; Elias-Gutierrez, M.; Pedersen, S. L.; Bessonov, K.; Hebert, P. D. N.

10.1101/375089 — molecular biology — Posted on 2018-07-23

729 Protein Structural Biology Using Cell-Free Platform from Wheat Germ

Novikova, I. V.; Sharma, N.; Moser, T.; Sontag, R.; Liu, Y.; Collazo, M. J.; Cascio, D.; Shokuhfar, T.; Hellmann, H.; Knoblauch, M.; Evans, J. E.

10.1101/375188 — molecular biology — Posted on 2018-07-23

730 Fast and general-purpose linear mixed models for genome-wide genetics

Runcie, D. E.; Crawford, L.

10.1101/373902 — genomics — Posted on 2018-07-23

731 Gene-Based Analysis in HRC Imputed Genome Wide Association Data Identifies Three Novel Genes For Alzheimer’s Disease

Baker, E.; Sims, R.; Leonenko, G.; Frizzati, A.; Harwood, J.; Grozeva, D.; Genetic and Environmental Risk in Alzheimer's Disease (GERAD) Consortium, ; PERADES consortium, ; IGAP consortia, ; Morgan, K.; Passmore, P.; Holmes, C.; Powell, J.; Brayne, C.; Gill, M.; Mead, S.; Heun, R.; Bossu, P.; Spalletta, G.; Goate, A.; Cruchaga, C.; van Duijn, C.; Maier, W.; Ramirez, A.; Jones, L.; Hardy, J.; Ivanov, D.; Hill, M.; Holmans, P.; Allen, N.; Morgan, P.; Williams, J.; Escott-Price, V.

10.1101/374876 — genetics — Posted on 2018-07-23

732 F1FO ATP synthase responds to glycolysis inhibition by localization into the inner boundary membrane

Zalyevskiy, K.; Rieger, B.; Hager, F.; Richter, C. P.; Psathaki, K.; Appelhans, T.; Busch, K. B.

10.1101/374967 — cell biology — Posted on 2018-07-23

733 Individual differences in cortical processing speed predict cognitive abilities: a model-based cognitive neuroscience account

Schubert, A.-L.; Nunez, M. D.; Hagemann, D.; Vandekerckhove, J.

10.1101/374827 — neuroscience — Posted on 2018-07-23

734 Fast Optical Sectioning for Widefield Fluorescence Mesoscopy with the Mesolens based on HiLo Microscopy

Schniete, J.; Franssen, A.; Dempster, J.; Bushell, T.; Amos, W. B.; McConnell, G.

10.1101/374884 — biophysics — Posted on 2018-07-23

735 Carnelian: alignment-free functional binning and abundance estimation of metagenomic reads

Nazeen, S.; Berger, B.

10.1101/375121 — bioinformatics — Posted on 2018-07-23

736 Atropselective Oxidation of 2,2′,3,3′,4,6′-Hexachlorobiphenyl (PCB 132) to Hydroxylated Metabolites by Human Liver Microsomes: Involvement of Arene Oxide Intermediates

Uwimana, E.; Li, X.; Yeung, C.; Patterson, E. V.; Lehmler, H.-J.

10.1101/373837 — pharmacology and toxicology — Posted on 2018-07-23

737 Species Designations Belie Phenotypic and Genotypic Heterogeneity in Oral Streptococci

Velsko, I. M.; Chakraborty, B.; Nascimento, M. M.; Burne, R. A.; Richards, V. P.

10.1101/375139 — microbiology — Posted on 2018-07-23

738 Targeting hepatitis C virus p7 channel activity reveals prospect for bimodal antiviral prophylaxis

Shaw, J.; Gosein, R.; Kalita, M. M.; Kankanala, J.; Mahato, D. R.; Foster, T.; Scott, C.; Bentham, M.; Wetherill, L.; Bloy, A.; Samson, A.; Harris, M.; Macdonald, A.; Rowlands, D.; Mankouri, J.; Fischer, W.; Foster, R.; Griffin, S.

10.1101/374793 — microbiology — Posted on 2018-07-23

739 Genome-wide Marginal Epistatic Association Mapping in Case-Control Studies

Crawford, L.; Zhou, X.

10.1101/374983 — genetics — Posted on 2018-07-23

740 Perspective: Genomic inference using diffusion models and the allele frequency spectrum

Ragsdale, A. P.; Moreau, C.; Gravel, S.

10.1101/375048 — genetics — Posted on 2018-07-23

741 CorrTest: A new method for detecting correlation of evolutionary rates in a phylogenetic tree

Tao, Q.; Tamura, K.; Battistuzzi, F.; Kumar, S.

10.1101/346635 — evolutionary biology — Posted on 2018-07-23

742 Contrasting patterns of divergence at the regulatory and sequence level in European Daphnia galeata natural populations

Ravindran, S. P.; Herrmann, M.; Cordellier, M.

10.1101/374991 — evolutionary biology — Posted on 2018-07-23

743 ReaDDy 2: Fast and flexible software framework for interacting-particle reaction dynamics

Hoffmann, M.; Fröhner, C.; Noe, F.

10.1101/374942 — biophysics — Posted on 2018-07-23

744 PathwayMatcher: multi-omics pathway mapping and proteoform network generation

Hernandez Sanchez, L. F.; Burger, B.; Horro, C.; Fabregat, A.; Johansson, S.; Njolstad, P. R.; Barsnes, H.; Hermjakob, H.; Vaudel, M.

10.1101/375097 — bioinformatics — Posted on 2018-07-23

745 iOmicsPASS: a novel method for integration of multi-omics data over biological networks and discovery of predictive subnetworks

Koh, H. W.; Fermin, D.; Choi, K. P.; Ewing, R.; Choi, H.

10.1101/374520 — systems biology — Posted on 2018-07-23

746 Cortical Column and Whole Brain Imaging of Neural Circuits with Molecular Contrast and Nanoscale Resolution

Gao, R.; Asano, S. M.; Upadhyayula, S.; Pisarev, I.; Milkie, D. E.; Liu, T.-L.; Singh, V.; Graves, A.; Huynh, G. H.; Zhao, Y.; Bogovic, J.; Colonell, J.; Ott, C. M.; Zugates, C.; Tappan, S.; Rodriguez, A.; Mosaliganti, K. R.; Megason, S. G.; Lippincott-Schwartz, J.; Hantman, A.; Rubin, G. M.; Kirchhausen, T.; Saalfeld, S.; Aso, Y.; Boyden, E. S.; Betzig, E.

10.1101/374140 — neuroscience — Posted on 2018-07-23

747 Schizophrenia-associated genomic copy number variants and subcortical brain volumes in the UK Biobank

Warland, A.; Kendall, K.; Rees, E.; Kirov, G.; Caseras, X.

10.1101/374678 — neuroscience — Posted on 2018-07-23

748 Detecting T-cell receptors involved in immune responses from single repertoire snapshots

Pogorelyy, M. V.; Minervina, A. A.; Shugay, M.; Chudakov, D. M.; Lebedev, Y. B.; Mora, T.; Walczak, A. M.

10.1101/375162 — immunology — Posted on 2018-07-23

749 How many individuals share a mitochondrial genome?

Andersen, M. M.; Balding, D. J.

10.1101/374686 — genetics — Posted on 2018-07-23

750 Evolutionary parallelisms of pectoral and pelvic network-anatomy from fins to limbs

Esteve-Altava, B.; Pierce, S. E.; Molnar, J. L.; Johnston, P.; Diogo, R.; Hutchinson, J. R.

10.1101/374504 — evolutionary biology — Posted on 2018-07-23

751 Longitudinal Epidemiological Study of Autism Subgroups Using Autism Treatment Evaluation Checklist (ATEC) Score

Mahapatra, S.; Khokhlovich, E.; Martinez, S.; Kannel, B.; Edelson, S. M.; Vyshedskiy, A.

10.1101/266221 — epidemiology — Posted on 2018-07-23

752 Genome-scale metabolic network reconstruction of the chloroform-respiring Dehalobacter restrictus strain CF

Correia, K.; Ho, H.; Mahadevan, R.

10.1101/375063 — systems biology — Posted on 2018-07-23

753 Improving Whole-Brain Neural Decoding of fMRI with Domain Adaptation

Zhou, S.; Cox, C. R.; Lu, H.

10.1101/375030 — neuroscience — Posted on 2018-07-23

754 Asgard archaea are diverse, ubiquitous, and transcriptionally active microbes

Cai, M.; Liu, Y.; Zhou, Z.; Yang, Y.; Pan, J.; Gu, J.-D.; Li, M.

10.1101/374165 — microbiology — Posted on 2018-07-23

755 Mitochondrial proline catabolism activates Ras1/cAMP/PKA-induced filamentation in Candida albicans

Silao, F. G. S.; Ward, M.; Ryman, K.; Wallstrom, A.; Brindefalk, B.; Udekwu, K.; Ljungdahl, P. O.

10.1101/374777 — microbiology — Posted on 2018-07-23

756 SMRT long-read sequencing and Direct Label and Stain optical maps allow the generation of a high-quality genome assembly for the European barn swallow (Hirundo rustica rustica)

Formenti, G.; Chiara, M.; Poveda, L.; Francoijs, K.-J.; Bonisoli-Alquati, A.; Canova, L.; Gianfranceschi, L. E. A.; Horner, D.; Saino, N.

10.1101/374512 — genomics — Posted on 2018-07-23

757 Genome-wide association meta-analysis of cocaine dependence: shared genetics with comorbid conditions

Cabana-Dominguez, J.; Shivalikanjli, A.; Fernandez-Castillo, N.; Cormand, B.

10.1101/374553 — genetics — Posted on 2018-07-23

758 Local adaptation under gene flow: Recombination, conditional neutrality and genetic trade-offs shape genomic patterns in Arabidopsis lyrata

Hämälä, T.; Savolainen, O.

10.1101/374900 — evolutionary biology — Posted on 2018-07-23

759 Regulatory mechanism predates the evolution of ant-like swarm intelligence in simulated robots

Fujisawa, R.; Ichinose, G.; Dobata, S.

10.1101/372391 — evolutionary biology — Posted on 2018-07-23

760 Feasibility of automated insulin delivery guided by continuous glucose monitoring in extremely preterm infants

Beardsall, K.; Thomson, L.; Elleri, D.; Dunger, D.; Hovorka, R.

10.1101/374801 — bioinformatics — Posted on 2018-07-23

761 Transient DNA Binding Induces RNA Polymerase II Compartmentalization During Herpesviral Infection Distinct From Phase Separation

McSwiggen, D. T.; Hansen, A. S.; Marie-Nelly, H.; Teves, S.; Heckert, A. B.; Dugast-Darzacq, C.; Hao, Y.; Umemoto, K. K.; Tjian, R.; Darzacq, X.

10.1101/375071 — bioinformatics — Posted on 2018-07-23

762 Free-ranging dogs understand human intentions and adjust their behavioral responses accordingly

Bhattacharjee, D.; Sau, S.; Bhadra, A.

10.1101/374595 — animal behavior and cognition — Posted on 2018-07-23

763 Stabilization / destabilization of the APP transmembrane domain by mutations in the di-glycine hinge alter helical structure and dynamics, and impair cleavage by γ-secretase

Goetz, A.; Mylonas, N.; Hoegel, P.; Silber, M.; Heinel, H.; Menig, S.; Vogel, A.; Freyrer, H.; Huster, D.; Luy, B.; Langosch, D.; Scharnagl, C.; Muhle-Goll, C.; Kamp, F.; Steiner, H.

10.1101/375006 — biophysics — Posted on 2018-07-23

764 Disentangling reporting and disease transmission

O'Dea, E. B.; Drake, J. M.

10.1101/234658 — epidemiology — Posted on 2018-07-23

765 Alternative splicing links histone modifications to stem cell fate decision

Xu, Y.; Zhao, W.; Olson, S. D.; Prabhakara, K. S.; Zhou, X.

10.1101/181875 — bioinformatics — Posted on 2018-07-23

766 Radial F-actin Organization During Early Neuronal Development

Meka, D. P.; Scharrenberg, R.; Zhao, B.; Koenig, T.; Schaefer, I.; Schwanke, B.; Kobler, O.; Klykov, S.; Richter, M.; Eggert, D.; Windhorst, S.; Dotti, C. G.; Kreutz, M. R.; Mikhaylova, M.; Calderon de Anda, F.

10.1101/372813 — neuroscience — Posted on 2018-07-23

767 Heat-stress triggers MAPK crosstalk to turn on the hyper-osmotic response pathway

Dunayevich, P.; Baltanas, R.; Clemente, J.; Couto, A.; Sapochnik, D.; Colman-Lerner, A.

10.1101/374918 — cell biology — Posted on 2018-07-23

768 Tumor extracellular vesicles are required for tumor-associated macrophage programming

Rabe, D. C.; Rustandy, F. D.; Lee, J.; Rosner, M. R.

10.1101/375022 — cancer biology — Posted on 2018-07-23

769 BET inhibition induces HEXIM1- and RAD51-dependent conflicts between transcription and replication

Bowry, A.; Piberger, A. L.; Petermann, E.

10.1101/374660 — molecular biology — Posted on 2018-07-23

770 Synthetic mRNA expressed Cas13a mitigates RNA virus infections

Bawage, S.; Tiwari, P.; Santangelo, P.

10.1101/370460 — molecular biology — Posted on 2018-07-23

771 Comparison of human and murine enteroendocrine cells by transcriptomic and peptidomic profiling

Roberts, G. P.; Larraufie, P.; Richards, P.; Kay, R. G.; Galvin, S. G.; Miedzybrodzka, E. L.; Leiter, A.; Li, J. H.; Glass, L. L.; Ma, M. K.; Lam, B.; Yeo, G. S.; Scharfmann, R.; Chiarugi, D.; Hardwick, R. H.; Reimann, F.; Gribble, F. M.

10.1101/374579 — cell biology — Posted on 2018-07-23

772 HOPS-dependent endosomal fusion required for efficient cytosolic delivery of therapeutic peptides and small proteins

Steinauer, A.; LaRochelle, J.; Wissner, R.; Berry, S.; Schepartz, A.

10.1101/374926 — biochemistry — Posted on 2018-07-23

773 On the molecular filters in cochlea transduction

Goussev, V.

10.1101/374363 — biophysics — Posted on 2018-07-23

774 A Sensory Processing Hierarchy for Thermal Touch: Thermal Adaptation Occurs Prior to Thermal-Tactile Integration

Ho, H.-N.; Chow, H. M.; Tsunokake, S.; Roseboom, W.

10.1101/374447 — neuroscience — Posted on 2018-07-23

775 Genetic differentiation is determined by geographic distance in Clarkia pulchella

Bontrager, M.; Angert, A. L.

10.1101/374454 — evolutionary biology — Posted on 2018-07-23

776 Static stability predicts the continuum of interleg coordination patterns in Drosophila

Szczecinski, N. S.; Bockemuhl, T.; Chockley, A. S.; Buschges, A.

10.1101/374272 — animal behavior and cognition — Posted on 2018-07-23

777 Perineuronal nets set the strength of thalamic recruitment of interneurons in the adult visual cortex

Faini, G.; Aguirre, A.; Landi, S.; Pizzorusso, T.; Ratto, G. M.; Deleuze, C.; Bacci, A.

10.1101/374587 — neuroscience — Posted on 2018-07-23

778 Basal Forebrain Deep Brain Stimulation Impacts the Regulation of Extracellular Vesicle Related Proteins in the Rat Brain

Li, W. V.; Montes, L. L.; Nair, J.; Dimanico, M.; Mazloum, R.; Hu, Z.; Scolari, B.; Denjel, J.; Zheilig, F.; Harvey, M.; Zhang, X.; Rainer, G.

10.1101/374256 — neuroscience — Posted on 2018-07-23

779 Antibiotic resistance evasion is explained by rare mutation frequency and not by lack of compensatory mechanisms

Carvalho, L. P.; Evangelopoulos, D.; Prosser, G.; Rodgers, A.; Dagg, B.; Khatri, B.; Ho, M. M.; Gutierrez, M.; Cortes, T.

10.1101/374215 — microbiology — Posted on 2018-07-23

780 Prediction of subgenome additive and interaction effects in allohexaploid wheat

Santantonio, N.; Jannink, J.-L.; Sorrells, M. E.

10.1101/373605 — genetics — Posted on 2018-07-23

781 Pathologically distinct fibroblast subsets drive inflammation and tissue damage in arthritis

Croft, A.; Campos, J.; Jansen, K.; Turner, J.; Marshall, J.; Attar, M.; Savary, L.; Perlman, H.; Barone, F.; McGettrick, H.; Fearon, D.; Wei, K.; Raychaudhuri, S.; Lorsunsky, I.; Brenner, M.; Coles, M.; Sansom, S.; Filer, A.; Buckley, C. D.

10.1101/374330 — immunology — Posted on 2018-07-23

782 Longevity defined as top 10% survivors is transmitted as a quantitative genetic trait: results from large three-generation datasets

van den Berg, N.; Rodriguez-Girondo, M.; van Dijk, I. K.; Mourits, R. J.; Mandemakers, K.; Janssens, A. A. P. O.; Beekman, M.; Smith, K. R.; Slagboom, P. E.

10.1101/373274 — genetics — Posted on 2018-07-23

783 Different processes shape prokaryotic and picoeukaryotic assemblages in the sunlit ocean microbiome

Logares, R.; Deutschmann, I. M.; Giner, C. R.; Krabberod, A. K.; Schmidt, T. S. B.; Rubinat-Ripoll, L.; Mestre, M.; Salazar, G.; Ruiz Gonzalez, C.; Sebastian, M.; de Vargas, C.; Acinas, S. G.; Duarte, C. M.; Gasol, J. M.; Massana, R.

10.1101/374298 — ecology — Posted on 2018-07-23

784 Addressing challenges of high spatial resolution, UHF field fMRI for group analysis of higher-order cognitive tasks; an inter-sensory task directing attention between visual and somatosensory domains.

Aquino, K. M.; Sokoliuk, R.; Pakenham, D.; Sanchez, R.; Hanslmayr, S.; Mayhew, S.; Mullinger, K.; Francis, S.

10.1101/373977 — neuroscience — Posted on 2018-07-23

785 Limited One-time Sampling Irregularity Age Map (LOTS-IAM): Automatic Unsupervised Detection of Brain White Matter Abnormalities in Structural Magnetic Resonance Images

Rachmadi, M. F.; Valdes Hernandez, M.; Li, H.; Guerrero, R.; Zhang, J.; Rueckert, D.; Komura, T.

10.1101/334292 — neuroscience — Posted on 2018-07-23

786 Systematic classification of shared components of genetic risk for common human diseases

Cortes, A.; Dendrou, C.; Fugger, L.; McVean, G.

10.1101/374207 — genetics — Posted on 2018-07-23

787 Clinical Impact and Cost-Effectiveness of a 176-Condition Expanded Carrier Screen

Beauchamp, K. A.; Muzzey, D.; Johansen Taber, K. A.

10.1101/372334 — genetics — Posted on 2018-07-23

788 EIPR1 controls dense-core vesicle cargo sorting and EARP complex localization in insulinoma cells

Topalidou, I.; Cattin-Ortola, J.; Ailion, M.

10.1101/374488 — cell biology — Posted on 2018-07-23

789 The Association between Alcohol Consumption and Telomere Length: A Meta-Analysis Focusing on Observational Studies

Li, J.; Guan, Y.; Akhtar, F.; Xu, X.; Yang, J.-J.; Chen, S.; Wang, Q.; Pan, H.; Qiu, W.

10.1101/374280 — cancer biology — Posted on 2018-07-23

790 ParGenes: a tool for massively parallel model selection and phylogenetic tree inference on thousands of genes.

Morel, B.; Kozlov, A. M.; Stamatakis, A.

10.1101/373449 — bioinformatics — Posted on 2018-07-23

791 The impact of different sources of heterogeneity on loss of accuracy from genomic prediction models

Zhang, Y.; Bernau, C.; Parmigiani, G.; Waldron, L.

10.1101/374355 — bioinformatics — Posted on 2018-07-23

792 A new normalization for the Nanostring nCounter gene expression assay

Molania, R.; Gagnon-Bartsch, J. A.; Dobrovic, A.; Speed, T. P.

10.1101/374173 — bioinformatics — Posted on 2018-07-23

793 A one penny imputed genome from next generation reference panels

Browning, B. L.; Zhou, Y.; Browning, S. R.

10.1101/357806 — bioinformatics — Posted on 2018-07-23

794 The PedS2/PedR2 two-component system is crucial for the rare earth element switch in Pseudomonas putida KT2440

Wehrmann, M.; Berthelot, C.; Billard, P.; Klebensberger, J.

10.1101/364661 — microbiology — Posted on 2018-07-23

795 Continuous single cell transcriptome dynamics from pluripotency to hemangiogenic lineage

Zhao, H.; Choi, K.

10.1101/374629 — developmental biology — Posted on 2018-07-23

796 Neutral tumor evolution?

Tarabichi, M.; Martincorena, I.; Gerstung, M.; Leroi, A. M.; Markowetz, F.; Spellman, P. T.; Morris, Q. D.; Lingjaerde, O. C.; Wedge, D. C.; Van Loo, P.; PCAWG Evolution and Heterogeneity Working Group,

10.1101/158006 — cancer biology — Posted on 2018-07-23

797 Robust Design for Coalescent Model Inference

Parag, K. V.; Pybus, O. G.

10.1101/317438 — bioinformatics — Posted on 2018-07-23

798 The Saccharomyces cerevisiae Hrq1 and Pif1 DNA helicases synergistically modulate telomerase activity in vitro

Nickens, D. G.; Rogers, C. M.; Bochman, M. L.

10.1101/327320 — biochemistry — Posted on 2018-07-23

799 Recording from the same neuron with high-density CMOS probes and patch-clamp: a ground-truth dataset and an experiment in collaboration.

Marques-Smith, A.; Neto, J. P.; Lopes, G.; Nogueira, J.; Calcaterra, L.; Frazao, J.; Kim, D.; Phillips, M. G.; Dimitriadis, G.; Kampff, A.

10.1101/370080 — neuroscience — Posted on 2018-07-23

800 Panoptic vDISCO imaging reveals neuronal connectivity, remote trauma effects and meningeal vessels in intact transparent mice

Cai, R.; Pan, C.; Ghasemigharagoz, A.; Todorov, M. I.; Foerstera, B.; Zhao, S.; Bhatia, H. S.; Mrowka, L.; Theodorou, D.; Rempfler, M.; Xavier, A.; Kress, B. T.; Benakis, C.; Liesz, A.; Menze, B.; Kerschensteiner, M.; Nedergaard, M.; Erturk, A.

10.1101/374785 — neuroscience — Posted on 2018-07-23

801 Information theoretic analysis of hyperspectralimaging systems with applications to fluorescencemicroscopy

Ram, S.

10.1101/373894 — bioengineering — Posted on 2018-07-23

802 Sapropterin Treatment Prevents Congenital Heart Defects Induced by Pregestational Diabetes in Mice

Engineer, A.; Saiyin, T.; Lu, X.; Kucey, A. S.; Urquhart, B. L.; Drysdale, T. A.; Norozi, K.; Feng, Q.

10.1101/304006 — pharmacology and toxicology — Posted on 2018-07-23

803 Uncovering the interplay between epigenome editing efficiency and sequence context using a novel inducible targeting system

Yang, B.; Borgeaud, A. C.; Aeschbach, L.; Dion, V.

10.1101/368480 — molecular biology — Posted on 2018-07-23

804 The molecular logic of Nanog-induced self-renewal

Heurtier, V.; Owens, N.; Gonzalez, I.; Mueller, F.; Proux, C.; Mornico, D.; Clerc, P.; Dubois, A.; Navarro, P.

10.1101/374371 — genomics — Posted on 2018-07-23

805 Exploring the Genetic Basis of Human Population Differences in DNA Methylation and their Causal Impact on Immune Gene Regulation

Husquin, L. T.; Rotival, M.; Fagny, M.; Quach, H.; Zidane, N.; McEwen, L. M.; MacIsaac, J. L.; Kobor, M. S.; Aschard, H.; Patin, E.; Quintana-Murci, L.

10.1101/371872 — genomics — Posted on 2018-07-23

806 Non-synonymous to synonymous substitutions suggest that orthologs tend to keep their functions, while paralogs are a source of functional novelty

Esposito, M.; Moreno-Hagelsieb, G.

10.1101/354704 — evolutionary biology — Posted on 2018-07-23

807 mRNA localisation in endothelial cells regulates blood vessel sprouting

Costa, G.; Tarannum, N.; Herbert, S.

10.1101/374850 — developmental biology — Posted on 2018-07-23

808 A rationally designed mimotope library for profiling of the human IgM repertoire

Pashov, A. D.; Shivarov, V.; Hadzhieva, M.; Kostov, V.; Ferdinandov, D.; Heinz, K.-M.; Pashova, S.; Todorova, M.; Vassilev, T. L.; Kieber-Emmons, T.; Meza-Zepeda, L. A.; Hovig, E.

10.1101/308973 — immunology — Posted on 2018-07-23

809 Long non-coding RNAs are largely dispensable for zebrafish embryogenesis, viability and fertility

Goudarzi, M.; Berg, K.; Pieper, L. M.; Schier, A. F.

10.1101/374702 — developmental biology — Posted on 2018-07-23

810 Thresholding of cryo-EM density maps by false discovery rate control

Beckers, M.; Jakobi, A.; Sachse, C.

10.1101/374546 — biophysics — Posted on 2018-07-23

811 Vpr drives massive cellular proteome remodelling in HIV-1 infection

Greenwood, E. J.; Williamson, J. C.; Sienkiewicz, A.; Naamati, A.; Matheson, N. J.; Lehner, P. J.

10.1101/364067 — microbiology — Posted on 2018-07-23

812 Biotinylation by proximity labelling favours unfolded proteins

Minde, D.-P.; Ramakrishna, M.; Lilley, K. S.

10.1101/274761 — cell biology — Posted on 2018-07-23

813 Did position-effect guide the evolutionary dynamics of developmental gene expression?

Bagadia, M.; Chandradoss, K. R.; Jain, Y.; Singh, H.; Lal, M.; Sandhu, K. S.

10.1101/127563 — genomics — Posted on 2018-07-23

814 Increased γ-Site H-Bond Stability Relates to Altered ε-Efficiency and Aβ Levels in the I45T Familial Alzheimer’s Disease Mutant of APP

Götz, A.; Högel, P.; Silber, M.; Chaitoglou, I.; Luy, B.; Muhle-Goll, C.; Scharnagl, C.; Langosch, D.

10.1101/372698 — biophysics — Posted on 2018-07-23

815 The wheat Sr22, Sr33, Sr35 and Sr45 genes confer resistance against stem rust in barley

Md. Hatta, M. A.; Johnson, R.; Matny, O.; Smedley, M. A.; Yu, G.; Chakraborty, S.; Bhatt, D.; Xia, X.; Arora, S.; Steuernagel, B.; Richardson, T.; Mago, R.; Lagudah, E. S.; Patron, N.; Ayliffe, M.; Rouse, M. N.; Harwood, W. A.; Periyannan, S. K.; Steffenson, B. J.; Wulff, B. B. H.

10.1101/374637 — plant biology — Posted on 2018-07-23

816 Convergent evolution of effector protease recognition by Arabidopsis and barley

Carter, M. E.; Helm, M.; Chapman, A.; Wan, E.; Restrepo Sierra, A. M.; Innes, R. W.; Bogdanove, A. J.; Wise, R. P.

10.1101/374264 — plant biology — Posted on 2018-07-23

817 NF-Y Controls Fidelity of Transcription Initiation at Gene Promoters Through Maintenance of the Nucleosome-Depleted Region

Oldfield, A. J.; Henriques, T.; Burkholder, A. B.; Paulet, D.; Cinghu, S.; Yang, P.; Scruggs, B. S.; Lavender, C. A.; Kumar, D.; Bennett, B.; Rivals, E.; Adelman, K.; Jothi, R.

10.1101/369389 — genomics — Posted on 2018-07-23

818 Implementation of the Water Framework Directive: Lessons learned and future perspectives for an ecologically meaningful classification of the status of Greek lakes, Mediterranean region

Moustaka-Gouni, M.; Sommer, U.; Economou-Amilli, A.; Arhonditsis, G. B.; Katsiapi, M.; Papastergiadou, E.; Kormas, K. A.; Vardaka, E.; Karayanni, H.; Papadimitriou, T.

10.1101/371799 — ecology — Posted on 2018-07-23

819 Incomplete information about the partner affects the development of collaborative strategies in joint action

Chackochan, V. T.; Sanguineti, V.

10.1101/374769 — neuroscience — Posted on 2018-07-23

820 Two central pattern generators from the crab, Cancer borealis, respond robustly and differentially to extreme extracellular pH

Haley, J. A.; Hampton, D.; Marder, E.

10.1101/374405 — neuroscience — Posted on 2018-07-22

821 Sulci of the canine brain: a review of terminology

Czeibert, K.; Piotti, P.; Petnehazy, O.; Kubinyi, E.

10.1101/374744 — neuroscience — Posted on 2018-07-23

822 MagicplexTM Sepsis real-time test for the rapid diagnosis of bloodstream infections in adults

Zboromyrska, Y.; Cilloniz, C.; Cobos-Trigueros, N.; Almela, M.; Hurtado, J. C.; Vergara, A.; Mata, C.; Soriano, A.; Mensa, J.; Marco, F.; Vila, J.

10.1101/374736 — microbiology — Posted on 2018-07-23

823 Analysis of mycobacterial infection-induced changes to host lipid metabolism in a zebrafish infection model reveals a conserved role for LDLR in infection susceptibility

Johansen, M. D.; Hortle, E.; Kasparian, J. A.; Romero, A.; Novoa, B.; Figueras, A.; Britton, W. J.; de Silva, K.; Purdie, A. C.; Oehlers, S. H.

10.1101/250548 — immunology — Posted on 2018-07-23

824 Positive-feedback defines the timing and robustness of angiogenesis

Page, D. J.; Thuret, R.; Venkatraman, L.; Takahashi, T.; Bentley, K.; Herbert, S. P.

10.1101/374389 — developmental biology — Posted on 2018-07-22

825 Toward deciphering developmental patterning with deep neural network

Shen, J.; Liu, F.; Tang, C.

10.1101/374439 — developmental biology — Posted on 2018-07-22

826 Neural crest cells regulate optic cup morphogenesis by promoting extracellular matrix assembly

Bryan, C. D.; Pfeiffer, R. L.; Jones, B. W.; Kwan, K. M.

10.1101/374470 — developmental biology — Posted on 2018-07-22

827 Context-explorer: Analysis of spatially organized protein expression in high-throughput screens

Ostblom, J.; Nazareth, E.; Tewary, M.; Zandstra, P.

10.1101/374751 — cell biology — Posted on 2018-07-23

828 Highly efficient scarless knock-in of reporter genes into human and mouse pluripotent stem cells via transient antibiotic selection

Sluch, V. M.; Chamling, X.; Wenger, C.; Duan, Y.; Rice, D. S.; Zack, D. J.

10.1101/374728 — cell biology — Posted on 2018-07-23

829 Different subtypes of EGFR exon19 mutation can affect prognosis of patients with non-small cell lung adenocarcinoma

Tian, Y.; Zhao, J.; Ren, P.; Wang, B.; Zhao, C.; Shi, C.; Wei, B.; Ma, J.; guo, y.

10.1101/374710 — cancer biology — Posted on 2018-07-23

830 Information-rich localization microscopy through machine learning

Kim, T.; Moon, S.; Xu, K.

10.1101/373878 — biophysics — Posted on 2018-07-22

831 On the molecular filters in cochlea transduction

Goussev, V.

10.1101/374363 — biophysics — Posted on 2018-07-22

832 Flexibility and rigidity index for chromosome packing, flexibility and dynamics analysis

Peng, J.; Yang, J.; Xia, K.

10.1101/374132 — bioinformatics — Posted on 2018-07-22

833 A biophysical model of molecular clusters: interplay of multivalency, membrane localization, steric hindrance, molecular flexibility and intracellular crowding

Chattaraj, A.; Youngstrom, M.; Loew, L. M.

10.1101/373084 — biophysics — Posted on 2018-07-22

834 Formulation, Evaluation and Antibacterial Efficiency of water-based herbal Hand Sanitizer Gel

Balkrishna, A.; Ghosh, S.; Yadaw, G.; Sharma, K.; Ghosh, S.; Joshi, S.

10.1101/373928 — microbiology — Posted on 2018-07-22

835 Natural variation in arsenic toxicity is explained by differences in branched chain amino acid catabolism

Zdraljevic, S.; Fox, B. W.; Strand, C.; Panda, O.; Tenjo-Castano, F. J.; Brady, S. C.; Crombie, T. A.; Doench, J. G.; Schroeder, F. C.; Andersen, E. C.

10.1101/373787 — genetics — Posted on 2018-07-22

836 Non-Parametric Analysis of Thermal Proteome Profiles Reveals Novel Drug-Binding Proteins

Childs, D.; Bach, K.; Franken, H.; Anders, S.; Kurzawa, N.; Bantscheff, M.; Mikhail, S.; Huber, W.

10.1101/373845 — bioinformatics — Posted on 2018-07-22

837 Spectral fingerprints or spectral tilt? Evidence for distinct oscillatory signatures of memory formation

Fellner, M.-C.; Gollwitzer, S.; Rampp, S.; Kreiselmeyer, G.; Bush, D.; Diehl, B.; Axmacher, N.; Hamer, H.; Hanslmayr, S.

10.1101/373514 — neuroscience — Posted on 2018-07-22

838 Narcolepsy risk loci are enriched in immune cells and suggest autoimmune modulation of the T cell receptor repertoire

Ollila, H.; Sharon, E.; Lin, L.; Sinnott-Armstrong, N.; Ambati, A.; Hillary, R. P.; Jolanki, O.; Faraco, J.; Einen, M.; Luo, G.; Zhang, J.; Han, F.; Yan, H.; Dong, X. S.; Li, J.; Hong, S.-C.; Kim, T. W.; Dauvilliers, Y.; Barateau, L.; Lammers, G. J.; Fronczek, R.; Mayer, G.; Santamaria, J.; Arnulf, I.; Knudsen, S.; Lyamouri-Bredahl, M. K.; Thorsby, P. M.; Plazzi, G.; Pizza, F.; Moresco, M.; Crowe, C.; Van-den-Eeden, S. K.; Lecendreux, M.; Bourgin, P.; Kanbayashi, T.; Peraita-Adrados, R.; Martinez-Orozco, F. J.; Beneto, A.; Montplaisir, J.; Desautels, A.; Huang, Y.-S.; Jennum, P.; Nevsimalova,

10.1101/373555 — genetics — Posted on 2018-07-22

839 Domestic gardens as favorable pollinator habitats in impervious landscapes

Leve, M.; Baudry, E.; Bessa-Gomes, C.

10.1101/374116 — ecology — Posted on 2018-07-22

840 TCRex: a webtool for the prediction of T-cell receptor sequence epitope specificity

Gielis, S.; Moris, P.; De Neuter, N.; Bittremieux, W.; Ogunjimi, B.; Laukens, K.; Meysman, P.

10.1101/373472 — bioinformatics — Posted on 2018-07-22

841 The landscape of coadaptation in Vibrio parahaemolyticus

Cui, Y.; Yang, C.; Qiu, H.; Wang, H.; Yang, R.; Falush, D.

10.1101/373936 — microbiology — Posted on 2018-07-22

842 ROSeq: A rank based approach to modelling gene expression in single cells

Lalit, M.; Biswas, A.; Ghosh, A.; Sengupta, D.

10.1101/374025 — genomics — Posted on 2018-07-22

843 Sexual Dichromatism Drives Diversification Within a Major Radiation of African Amphibians

Portik, D. M.; Bell, R. C.; Blackburn, D. C.; Bauer, A. M.; Barratt, C. D.; Branch, W. R.; Burger, M.; Channing, A.; Colston, T. J.; Conradie, W.; Dehling, J. M.; Drewes, R. C.; Ernst, R.; Greenbaum, E.; Gvozdik, V.; Harvey, J.; Hillers, A.; Hirschfeld, M.; Jongsma, G.; Kielgast, J.; Kouete, M. T.; Lawson, L. P.; Leache, A. D.; Loader, S. P.; Lötters, S.; van der Meijden, A.; Menegon, M.; Müller, S.; Nagy, Z. T.; Ofori-Boateng, C.; Ohler, A.; Papenfuss, T. J.; Rössler, D.; Sinsch, U.; Rödel, M.-O.; Veith, M.; Vindum, J.; Zassi-Boulou, A.-G.; McGuire, J. A.

10.1101/372250 — evolutionary biology — Posted on 2018-07-22

844 Co-occurring genetic alterations in the RAS pathway promote resistance to MET inhibitor treatment in non-small cell lung cancer with a MET exon 14 skipping mutation

Rotow, J. K.; Gui, P.; Wu, W.; Raymond, V. M.; Lanman, R. B.; Kaye, F. J.; Peled, N.; Fece de la Cruz, F.; Nadres, B.; Corcoran, R. B.; Yeh, I.; Bastian, B. C.; Starostik, P.; Newsom, K.; Olivas, V. R.; Wolff, A. M.; Fraser, J. S.; Collisson, E. A.; McCoach, C. E.; Blakely, C. M.; Bivona, T. G.

10.1101/374181 — cancer biology — Posted on 2018-07-22

845 Long-range memory of growth and cycle progression correlates cell cycles in lineage trees

Kuchen, E. E.; Becker, N.; Claudino, N.; Hoefer, T.

10.1101/373258 — systems biology — Posted on 2018-07-22

846 Components of Executive Function Predict Regional Prefrontal Volumes

Mace, R. A.; Waters, A. B.; Sawyer, K. S.; Turrisi, T.; Gansler, D. A.

10.1101/374009 — neuroscience — Posted on 2018-07-22

847 Regression of solid breast tumours in mice by Newcastle disease virus is associated with production of apoptosis related-cytokines

Ahmad, U.; Raihan, J.; Yong, Y. K.; Eshak, Z.; Othman, F.; Ideris, A.

10.1101/374157 — immunology — Posted on 2018-07-22

848 Web-based design and analysis tools for CRISPR base editing

Hwang, G.-h.; Park, J.; Lim, K.; Kim, S.; Yu, J.; Kim, S.-T.; Eils, R.; Kim, J.-S.; Bae, S.

10.1101/373944 — bioinformatics — Posted on 2018-07-22

849 In vivo Effects of Temperature on the Heart and Pyloric Rhythms in the Crab, Cancer borealis

Kushinsky, D.; Morozova, E.; Marder, E.

10.1101/249631 — neuroscience — Posted on 2018-07-22

850 Parallel natural selection in the cold-adapted crop-wild relative Tripsacum dactyloides and artificial selection in temperate adapted maize

Yan, L.; Kenchanmane Raju, S. K.; Lai, X.; Zhang, Y.; Dai, X.; Rodriguez, O.; Mahboub, S.; Roston, R. L.; Schnable, J. C.

10.1101/187575 — plant biology — Posted on 2018-07-22

851 NFTsim: Theory and Simulation of Multiscale Neural Field Dynamics

Sanz-Leon, P.; Robinson, P. A.; Knock, S. A.; Drysdale, P. D.; Abeysuriya, R. G.; Fung, P. K.; Rennie, C. J.; Zhao, X.

10.1101/237032 — neuroscience — Posted on 2018-07-22

852 Tissue-specific actions of Pax6 on proliferation-differentiation balance in the developing forebrain are Foxg1-dependent

Quintana-Urzainqui, I.; Kozic,, Z.; Mitra, S.; Tian, T.; Manuel, M.; Mason, J. O.; Price, D. J.

10.1101/374074 — developmental biology — Posted on 2018-07-22

853 High-dimensional geometry of population responses in visual cortex

Stringer, C.; Pachitariu, M.; Steinmetz, N.; Carandini, M.; Harris, K. D.

10.1101/374090 — neuroscience — Posted on 2018-07-22

854 Accurate transmission of IGF-I into AKT signaling activity in individual cells

Gross, S. M.; Dane, M. A.; Bucher, E.; Heiser, L. M.

10.1101/373993 — cell biology — Posted on 2018-07-21

855 Nuclear pore density controls heterochromatin reorganization during senescence

Bickmore, W.; Boumendil, C.; Hari, P.; Olsen, K.; Acosta, J.-C.

10.1101/374033 — cell biology — Posted on 2018-07-21

856 The structural basis for activation of voltage sensor domains in an ion channel TPC1

Kintzer, A. F.; Green, E.; Dominik, P.; Bridges, M.; Armache, J.-p.; Deneka, D.; Kim, S.; Hubbell, W.; Kossiakoff, A.; Cheng, Y.; Stroud, R.

10.1101/373860 — biophysics — Posted on 2018-07-21

857 Self-healing dyes for super-resolution microscopy

van der Velde, J.; Smit, J.; Punter, M.; Cordes, T.

10.1101/373852 — biophysics — Posted on 2018-07-21

858 Minerva: An Alignment and Reference Free Approach to Deconvolve Linked-Reads for Metagenomics

Danko, D. C.; Meleshko, D.; Bezdan, D.; Mason, C.; Hajirasouliha, I.

10.1101/217869 — bioinformatics — Posted on 2018-07-21

859 Robust Mouse Tracking in Complex Environments using Neural Networks

Geuther, B. Q.; Deats, S. P.; Fox, K. J.; Murray, S. A.; Braun, R. E.; White, J. K.; Chesler, E. J.; Lutz, C. M.; Kumar, V.

10.1101/336685 — animal behavior and cognition — Posted on 2018-07-21

860 Inhibition and excitation shape activity selection: effect of oscillations in a decision-making circuit

Bose, T.; Reina, A.; Marshall, J. A. R.

10.1101/373282 — neuroscience — Posted on 2018-07-21

861 Increased GITRL impairs the function of MDSCs and exacerbates primary Sjögren’s syndrome

Tian, J.; Rui, K.; Hong, Y.; Lin, X.; Wang, X.; Xiao, F.; Xu, H.; Lu, L.; Wang, S.

10.1101/373753 — immunology — Posted on 2018-07-21

862 Novel platelet-neutrophil interaction via activated αIIbβ3 mediates NETosis under flow

Constantinescu-Bercu, A.; Salles-Crawley, I. I.; Woollard, K. J.; Crawley, J. T.

10.1101/373670 — cell biology — Posted on 2018-07-21

863 Impaired miRNA processing by DICER1 downregulation endows thyroid cancer with increased aggressiveness

Ramirez-Moya, J.; Wert-Lamas, L.; Riesco-Eizaguirre, G.; Santisteban, P.

10.1101/373746 — cancer biology — Posted on 2018-07-21

864 Identification and characterization of yeast and human glycosphingolipid flippases

Roland, B. P.; Naito, T.; Best, J. T.; Arnaiz-Yepez, C.; Takatsu, H.; Yu, R. J.; Shin, H.-W.; Graham, T. R.

10.1101/373712 — biochemistry — Posted on 2018-07-21

865 Recent mixing of Vibrio parahaemolyticus populations

Yang, C.; Pei, X.; Wu, Y.; Yan, L.; Yan, Y.; Song, Y.; Coyle, N.; Martinez-Urtaza, J.; Quince, C.; Hu, Q.; Jiang, M.; Feil, E.; Yang, D.; Song, Y.; Zhou, D.; Yang, R.; Falush, D.; Cui, Y.

10.1101/354761 — microbiology — Posted on 2018-07-20

866 6mer seed toxicity in tumor suppressive microRNAs

Gao, Q. Q.; Putzbach, W. E.; Murmann, A. E.; Chen, S.; Sarshad, A. A.; Peter, J. M.; Bartom, E. T.; Hafner, M.; Peter, M. E.

10.1101/284406 — cell biology — Posted on 2018-07-20

867 GIMLET: Identifying Biological Modulators in Context-Specific Gene Regulation Using Local Energy Statistics

Shimamura, T.; Matsui, Y.; Kajino, T.; Ito, S.; Takahashi, T.; Miyano, S.

10.1101/349928 — bioinformatics — Posted on 2018-07-20

868 The prokaryotic SPHINX 1.8 REP protein is tissue-specific and expressed in human germline cells

Manuelidis, L.

10.1101/373803 — cell biology — Posted on 2018-07-20

869 EphB2 and ERK signaling are required for heterotypic contact inhibition of locomotion to drive cell sorting

Brayford, S.; Serna-Morales, E.; Luchici, A.; Hiratsuka, T.; Stramer, B.

10.1101/373696 — cell biology — Posted on 2018-07-20

870 Protein aggregation and membrane bending govern nanotube morphology.

Alimohamadi, H.; Ovryn, B.; Rangamani, P.

10.1101/373811 — biophysics — Posted on 2018-07-20

871 A GYS2/p53 negative feedback loop restricts tumor growth in HBV-related hepatocellular carcinoma

Chen, S.-L.; Zhang, C. Z.; Liu, L.-L.; Lu, S.-X.; Pan, Y.-H.; Wang, C.-H.; He, Y.-F.; Lin, C.-S.; Yang, X.; Xie, D.; Yun, J.-P.

10.1101/373761 — pathology — Posted on 2018-07-20

872 The RNA-binding proteins CELF1 and ELAVL1 cooperatively control alternative splicing

David, G.; Deschamps, S.; Padilla-Parra, S.; Tramier, M.; Audic, Y.; Paillard, L.

10.1101/373704 — molecular biology — Posted on 2018-07-20

873 PIP4Ks Suppress Insulin Signaling Through a Catalytic-Independent Mechanism

Wang, D. G.; Paddock, M. N.; Lundquist, M. R.; Sun, J. Y.; Mashadova, O.; Amadiume, S.; Bumpus, T. W.; Hodakoski, C.; Hopkins, B. D.; Fine, M.; Hill, A.; Yang, T. J.; Baskin, J. M.; Dow, L. E.; Cantley, L. C.

10.1101/370544 — cell biology — Posted on 2018-07-20

874 Unidirectional monosynaptic connections from auditory areas to the primary visual cortex in the marmoset monkey

Rosa, M. G. P.; Majka, P.; Bai, S.; Chan, J. M.; Huo, B.-X.; Jermakow, N.; Lin, M. K.; Takahashi, Y. S.; Wolkowicz, I. H.; Worthy, K. H.; Rajan, R.; Reser, D. H.; Wojcik, D. K.; Okano, H.; Mitra, P. P.

10.1101/373779 — neuroscience — Posted on 2018-07-20

875 An automated workflow for the discovery and docking simulation of the protein-protein complexes using in vivo chemical cross-linking

Svetlov, V.; Nudler, E.

10.1101/373829 — molecular biology — Posted on 2018-07-20

876 Coordinative Metabolism of Glutamine Carbon and Nitrogen in proliferating Cancer Cells Under Hypoxia

Wang, Y.; Bai, C.; Ruan, Y.; Liu, M.; Chu, Q.; Qiu, L.; Yang, C.; Li, B.

10.1101/373720 — biochemistry — Posted on 2018-07-20

877 Discovery of biased orientation of human DNA motif sequences affecting enhancer-promoter interactions and transcription of genes

Osato, N.

10.1101/290825 — bioinformatics — Posted on 2018-07-20

878 Solid immersion microscopy readily and inexpensively enables 12 nm resolution on plunge-frozen cells

Martin-Fernandez, M. L.; Wang, L.; Bateman, B.; Zanetti-Domingues, L. C.; Moores, A.; Needham, S. R.; Rolfe, D.; Astbury, S.; Spindloe, C.; Darrow, M.; Romano, M.; Beis, K.; Clarke, D.

10.1101/373647 — biophysics — Posted on 2018-07-20

879 Genome-scale metabolic construction of the stress-tolerant hybrid yeast Zygosaccharomyces parabailii

Di Filippo, M.; Ortiz-Merino, R. A.; Damiani, C.; Frascotti, G.; Porro, D.; Wolfe, K. H.; Branduardi, P.; Pescini, D.

10.1101/373621 — systems biology — Posted on 2018-07-20

880 Parkinson’s disease-linked Parkin mutations impair glutamatergic synaptic transmission and plasticity

Zhu, M.; Cortese, G.; Waites, C.

10.1101/373597 — neuroscience — Posted on 2018-07-20

881 A Chromosome-Scale Assembly of the Enormous (32 Gb) Axolotl Genome

Smith, J. J.; Timoshevskaya, N.; Timoshevskiy, V. A.; Keinath, M. C.; Hardy, D.; Voss, S. R.

10.1101/373548 — genomics — Posted on 2018-07-20

882 De Novo assembly of the goldfish (Carassius auratus) genome and the evolution of genes after whole genome duplication

Chen, Z.; Omori, Y.; Koren, S.; Shirokiya, T.; Kuroda, T.; Miyamoto, A.; Wada, H.; Fujiyama, A.; Toyoda, A.; Zhang, S.; Wolfsberg, T. G.; Kawakami, K.; Phillippy, A. M.; NISC Comparative Sequencing Program, ; Mullikin, J. C.; Burgess, S. M.

10.1101/373431 — genomics — Posted on 2018-07-20

883 Mother centrioles are dispensable for deuterosome formation and function during basal body amplification

Zhao, H.; Chen, Q.; Huang, Q.; Yan, X.; Zhu, X.

10.1101/373662 — cell biology — Posted on 2018-07-20

884 Human Cervical Keratinocyte-Derived Monolayer and Organoid Cultures for Disease Modelling and Drug Screening

Villa, P. L.; Jackson, R.; Eade, S.; Escott, N.; Zehbe, I.

10.1101/373456 — cancer biology — Posted on 2018-07-20

885 Kinase Driver Mutations in Protein-protein Structure may associate to Disease by Effecting Kinase Stability

Chen, J.; Xu, Y.; Gao, Y.; Lu, X.

10.1101/373613 — biochemistry — Posted on 2018-07-20

886 Pkd2l1 is required for mechanoception in cerebrospinal fluid-contacting neurons and maintenance of spine curvature

Sternberg, J.; Prendergast, A. E.; Brosse, L.; Cantaut-Belarif, Y.; Thouvenin, O.; Orts-Del'Immagine, A.; Castillo, L.; Djenoune, L.; Kurisu, S.; McDearmid, J. R.; Bardet, P.-L.; Boccara, C.; Okamoto, H.; Delmas, P.; Wyart, C.

10.1101/373589 — neuroscience — Posted on 2018-07-20

887 Subjective perceptual experience tracks the neural signature of sensory evidence accumulation during decision formation

Tagliabue, C. F.; Veniero, D.; Benwell, C. S.; Cecere, R.; Savazzi, S.; Thut, G.

10.1101/373464 — neuroscience — Posted on 2018-07-20

888 5-HAYED peptide can protect AD brain by scavenging the redundant iron ions and the catalyzed radicals

Zou, Z.; Shao, S.; Li, L.; Cheng, X.; Shen, Q.

10.1101/373639 — neuroscience — Posted on 2018-07-20

889 Native RNA sequencing on nanopore arrays redefines the transcriptional complexity of a viral pathogen

Depledge, D. P.; Kalanghad Puthankalam, S.; Sadaoka, T.; Beady, D.; Mori, Y.; Placantonakis, D.; Mohr, I.; Wilson, A.

10.1101/373522 — microbiology — Posted on 2018-07-20

890 The Subtype Specificity of Genetic Loci Associated with Stroke in 16,664 cases and 32,792 controls

Traylor, M.; Anderson, C.; Rutten-Jacobs, L.; Falcone, G.; Comeau, M.; Ay, H.; Sudlow, C.; Xu, H.; Mitchell, B.; Cole, J.; Rexrode, K.; Jimenez-Conde, J.; Schmidt, R.; Grewal, R.; Sacco, R.; Ribases, M.; Rundek, T.; Rosand, J.; Dichgans, M.; Lee, J.-M.; Langefeld, C.; Kittner, S.; Markus, H.; Woo, D.; Malik, R.

10.1101/371153 — genetics — Posted on 2018-07-20

891 Quantitative, real-time, single cell analysis in tissue reveals expression dynamics of neurogenesis

Manning, C. S.; Biga, V.; Boyd, J.; Kursawe, J.; Ymisson, B.; Spiller, D. G.; Sanderson, C. M.; Galla, T.; Rattray, M.; Papalopulu, N.

10.1101/373407 — developmental biology — Posted on 2018-07-20

892 Structural determinants and genetic modifications enhance BMP2 stability and extracellular secretion

Ponnazhagan, S.; Khattar, V.; Lee, J. H.; Wang, H.; Bastola, S.

10.1101/373654 — cell biology — Posted on 2018-07-20

893 Fusion of a functional glutaredoxin to the radical-generating subunit of ribonucleotide reductase

Rozman Grinberg, I.; Lundin, D.; Sahlin, M.; Crona, M.; Berggren, G.; Hofer, A.; Sjöberg, B.-M.

10.1101/373563 — biochemistry — Posted on 2018-07-20

894 Modelling predation and mortality rates from the fossil record of gastropods

Budd, G.; Mann, R. P.

10.1101/373399 — paleontology — Posted on 2018-07-20

895 A Predictive Epilepsy Index Based on Probabilistic Classification of Interictal Spike Waveforms

Pfammatter, J. A.; Bergstrom, R. A.; Wallace, E. P.; Maganti, R. K.; Jones, M. V.

10.1101/373571 — neuroscience — Posted on 2018-07-20

896 Sensitivity to Affective Touch Depends on Adult Attachment Style

Krahe, C.; von Mohr, M.; Gentsch, A.; Guy, L.; Vari, C.; Nolte, T.; Fotopoulou, A.

10.1101/373415 — neuroscience — Posted on 2018-07-20

897 Signalling pathways drive heterogeneity of ground state pluripotency

McEwen, K. R.; Linnett, S.; Leitch, H. G.; Srivastava, P.; Al-Zouabi, L.; Huang, T.-C.; Rotival, M.; Sardini, A.; Chan, T. E.; Filippi, S.; Stumpf, M.; Petretto, E.; Hajkova, P.

10.1101/373373 — molecular biology — Posted on 2018-07-20

898 The soil microbial foodweb revisited with metatranscriptomics - predatory Myxobacteria as keystone taxon?

Petters, S.; Soellinger, A.; Bengtsson, M. M.; Urich, T.

10.1101/373365 — microbiology — Posted on 2018-07-20

899 The IκB-Protein BCL-3 Controls MAPK Activity by Promoting TPL-2 Degradation in the Nucleus.

Collins, P. E.; Somma, D.; Kerrigan, D.; Herrington, F.; Keeshan, K. R.; Nibbs, R. J.; Carmody, R. J.

10.1101/373209 — immunology — Posted on 2018-07-20

900 DNA Methylation Explains a Subset of Placental Gene Expression Differences Based on Ancestry and Altitude

Gundling, W. E.; Pantham, P.; Illsley, N. P.; Echalar, L.; Zamudio, S.; Wildman, D. E.

10.1101/261974 — genomics — Posted on 2018-07-20

901 Y-profile evidence: close paternal relatives and mixtures

Andersen, M. M.; Balding, D. J.

10.1101/373423 — genetics — Posted on 2018-07-20

902 A generic widefield topographical and chemical photopatterning method for hydrogels.

Pasturel, A.; Strale, P.-O.; Studer, V.

10.1101/370882 — bioengineering — Posted on 2018-07-20

903 NF-Y Controls Fidelity of Transcription Initiation at Gene Promoters Through Maintenance of the Nucleosome-Depleted Region

Oldfield, A. J.; Henriques, T.; Burkholder, A. B.; Paulet, D.; Cinghu, S.; Yang, P.; Scruggs, B. S.; Lavender, C. A.; Kumar, D.; Bennett, B.; Rivals, E.; Adelman, K.; Jothi, R.

10.1101/369389 — genomics — Posted on 2018-07-20

904 Evidence for Miocene overwater colonization in Caribbean Cyrtognatha spiders

Candek, K.; Agnarsson, I.; Binford, G.; Kuntner, M.

10.1101/372979 — evolutionary biology — Posted on 2018-07-20

905 Surveying insect flower visitors to crops in New Zealand and Australia

Howlett, B. G.; Evans, L. J.; Kendall, L. K.; Rader, R.; McBrydie, H. M.; Read, S. F. J.; Cutting, B. T.; Robson, A.; Pattemore, D. E.; Willcox, B. K.

10.1101/373126 — ecology — Posted on 2018-07-20

906 The taxonomic and functional biogeographies of phytoplankton and zooplankton communities across boreal lakes

St-Gelais, N. F.; Vogt, R. J.; del Giorgio, P. A.; Beisner, B. E.

10.1101/373332 — ecology — Posted on 2018-07-20

907 Automated 3-D mapping of single neurons in the standard brain atlas using single brain slices

Song, J. H.; Song, Y.-H.; Kim, J.-H.; Choi, W.; Lee, S.-H.; Paik, S.-B.

10.1101/373134 — neuroscience — Posted on 2018-07-20

908 Outcome of TMS-based motor mapping depends on TMS current direction

Vink, J. J.; Petrov, P. I.; Mandija, S.; Dijkhuizen, R. M.; Neggers, S. F.

10.1101/371997 — neuroscience — Posted on 2018-07-20

909 The adaptation of muscle activity during split-belt walking reveals age-dependent decline of motor learning

Iturralde, P. A.; Torres-Oviedo, G.

10.1101/372359 — neuroscience — Posted on 2018-07-20

910 Evaluating the diversity of maternal age effects upon neonatal survival across animal species

Ivimey-Cook, E. R.; Moorad, J.

10.1101/373340 — evolutionary biology — Posted on 2018-07-20

911 Improvements in the fossil record may largely resolve the conflict between morphological and molecular estimates of mammal phylogeny

Beck, R. M. D.; Baillie, C.

10.1101/373191 — evolutionary biology — Posted on 2018-07-20

912 The genome of the jellyfish Clytia hemisphaerica and the evolution of the cnidarian life-cycle

Leclere, L.; Horin, C.; Chevalier, S.; Lapebie, P.; Dru, P.; Peron, S.; Jager, M.; Condamine, T.; Pottin, K.; Romano, S.; Steger, J.; Sinigaglia, C.; Barreau, C.; Quiroga-Artigas, G.; Ruggiero, A.; Fourrage, C.; Kraus, J.; Poulain, J.; Aury, J.-M.; Wincker, P.; Queinnec, E.; Technau, U.; Manuel, M.; Momose, T.; Houliston, E.; Copley, R.

10.1101/369959 — evolutionary biology — Posted on 2018-07-20

913 Rampant hybrid misexpression in craniofacial tissues within a recent adaptive radiation of Cyprinodon pupfishes

McGirr, J. A.; Martin, C. H.

10.1101/372912 — evolutionary biology — Posted on 2018-07-20

914 Dispersers are more likely to follow mucus trails in the land snail Cornu aspersum

Vong, A.; Ansart, A.; Dahirel, M.

10.1101/373001 — ecology — Posted on 2018-07-20

915 sigfit: flexible Bayesian inference of mutational signatures

Gori, K.; Baez-Ortega, A.

10.1101/372896 — cancer biology — Posted on 2018-07-20

916 Suppressive waves disambiguate the representation of long-range apparent motion in awake monkey V1

Chemla, S.; Reynaud, A.; diVolo, M.; Zerlaut, Y.; Perrinet, L.; Destexhe, A.; Chavane, F.

10.1101/372763 — neuroscience — Posted on 2018-07-20

917 Tracking Activity In A Deformable Nervous System With Motion Correction And Point-Set Registration

Lagache, T.; Lansdell, B.; Tang, J.; Yuste, R.; Fairhall, A.

10.1101/373035 — neuroscience — Posted on 2018-07-20

918 GC content shapes mRNA decay and storage in human cells

Courel, M.; Clement, Y.; Foretek, D.; Vidal, O.; Yi, Z.; Kress, M.; Vindry, C.; Benard, M.; Bossevain, C.; Antoniewski, C.; Morillon, A.; Brest, P.; Hubstenberger, A.; Roest Crollius, H.; Standart, N.; Weil, D.

10.1101/373498 — molecular biology — Posted on 2018-07-20

919 Antibiotic treatment protocols revisited: The challenges of a conclusive assessment by mathematical modeling

Uecker, H.; Bonhoeffer, S.

10.1101/372938 — evolutionary biology — Posted on 2018-07-20

920 A new lipid force field (FUJI)

Kamiya, N.; Shinoda, K.; Fujitani, H.

10.1101/373183 — biophysics — Posted on 2018-07-20

921 MetaMaps - Strain-level metagenomic assignment and compositional estimation for long reads

Dilthey, A.; Jain, C.; Koren, S.; Phillippy, A.

10.1101/372474 — bioinformatics — Posted on 2018-07-20

922 FleN contributes to heterogeneous swimming at high temperatures in Pseudomonas syringae

Hockett, K. L.; Lindow, S. E.

10.1101/372060 — microbiology — Posted on 2018-07-20

923 A Virus-Packageable CRISPR Screen Identifies Host Factors Mediating Interferon Inhibition of HIV

Ohainle, M.; Pendergast, L.; Vermeire, J.; Roesch, F.; Humes, D.; Basom, R.; Delrow, J. J.; Overbaugh, J.; Emerman, M.

10.1101/363432 — microbiology — Posted on 2018-07-20

924 Q-FADD: A mechanistic approach for modeling the accumulation of proteins at sites of DNA damage by free diffusion

Mahadevan, J.; Rudolph, J.; Jha, A.; Tay, J. W.; Dragavon, J.; Grumstrup, E. M.; Luger, K.

10.1101/373043 — biochemistry — Posted on 2018-07-20

925 Plasticity in the glucagon interactome reveals novel proteins that regulate glucagon secretion in alpha TC1-6 cells

Asadi, F.; Dhanvantari, S.

10.1101/373118 — cell biology — Posted on 2018-07-20

926 Different Effects of Three Types of Water on Developmental Behaviors, Lipid Metabolism and Antioxidant Capacity of Juvenile Zebrafish

Zhu, J.; Chang, C.

10.1101/373381 — developmental biology — Posted on 2018-07-20

927 Is it possible to reconstruct an accurate cell lineage using CRISPR recorders?

Salvador-Martinez, I.; Grillo, M.; Averof, M.; Telford, M. J.

10.1101/373357 — developmental biology — Posted on 2018-07-20

928 An alternative membrane topology permits lipid droplet localization of peroxisomal fatty acyl-CoA reductase 1

Exner, T.; Romero-Brey, I.; Yifrach, E.; Rivera-Monroy, J.; Schrul, B.; Zouboulis, C. C.; Stremmel, W.; Honsho, M.; Bartenschlager, R.; Zalckvar, E.; Poppelreuther, M.; Fuellekrug, J.

10.1101/373530 — cell biology — Posted on 2018-07-20

929 Dynamics of Cas10 Govern Discrimination between Self and Nonself in Type III CRISPR-Cas Immunity

Wang, L.; Mo, C. Y.; Wasserman, M. R.; Rostol, J. T.; Marraffini, L. A.; Liu, S.

10.1101/369744 — biophysics — Posted on 2018-07-20

930 In vivo fate of free and encapsulated iron oxide nanoparticles after injection of labelled stem cells

Ashraf, S.; Taylor, A.; Sharkey, J.; Barrow, M.; Murray, P.; Wilm, B.; Poptani, H.; Rosseinsky, M. J.; Adams, D. J.; Levy, R.

10.1101/366518 — biochemistry — Posted on 2018-07-20

931 Synthetic mammalian pattern formation driven by differential diffusivity of Nodal and Lefty

Sekine, R.; Shibata, T.; Ebisuya, M.

10.1101/372490 — synthetic biology — Posted on 2018-07-20

932 Short hairpin RNAs artifactually impair cell growth and suppress clustered microRNA expression.

Powers, J.; da Rocha, E.; Pearson, D.; Missios, P.; de Soysa, T. Y.; Barragan, J.; Cahan, P.; Daley, G.

10.1101/372920 — cancer biology — Posted on 2018-07-20

933 Long-term blooming filamentous calcareous alga provides substrate for other coral-competitive macroalgae in the degraded lagoon of Dongsha Atoll (Pratas), Taiwan

Nieder, C.; Chen, C. A.; Liu, S.-L.

10.1101/363796 — ecology — Posted on 2018-07-20

934 Accounting for taste: A multi-attribute neurocomputational model explains the neural dynamics of choices for self and others

Harris, A.; Clithero, J. A.; Hutcherson, C. A.

10.1101/329391 — neuroscience — Posted on 2018-07-20

935 Hyd ubiquitinates the NF-κB co-factor Akirin to activate an effective immune response in Drosophila

Cammarata-Mouchtouris, A.; Nguyen, X.-H.; Bonnay, F.; Goto, A.; Orian, A.; Fauvarque, M.-O.; Boutros, M.; Reichhart, J.-M.; Matt, N.

10.1101/323170 — immunology — Posted on 2018-07-20

936 Direct Observation of Topoisomerase IA Gate Dynamics

Mills, M.; Tse-Dinh, Y.-C.; Neuman, K. C.

10.1101/356659 — biophysics — Posted on 2018-07-20

937 A skin pigment compound that also functions as sunglasses for birds

Zawadzka, M.; Racz, B.; Ambrosini, D.; Gorbitz, C. H.; Morth, J. P.; Lundanes, E.; Rise, F.; Ringvold, A.; Wilson, S. R.

10.1101/336644 — biochemistry — Posted on 2018-07-20

938 Spatial and Temporal Cortical Variability Track with Age and Affective Experience During Emotion Regulation in Youth

Guassi Moreira, J. F.; McLaughlin, K. A.; Silvers, J. A.

10.1101/291245 — neuroscience — Posted on 2018-07-20

939 Isolation, Detection and Characterization of Aerobic Bacteria from Honey Samples of Bangladesh

Saha, S.

10.1101/298695 — microbiology — Posted on 2018-07-20

940 Tissue flow induces cell shape changes during organogenesis

Erdemci-Tandogan, G.; Clark, M. J.; Amack, J. D.; Manning, M. L.

10.1101/295840 — biophysics — Posted on 2018-07-20

941 Helmsman: fast and efficient generation of input matrices for mutation signature analysis

Carlson, J.; Li, J.; Zöllner, S.

10.1101/373076 — bioinformatics — Posted on 2018-07-20

942 JEPEGMIX2-P: Novel pathway transcriptomic method greatly increases detection of molecular pathways in cosmopolitan cohorts

Chatzinakos, C.; Lee, D.; Na, C.; Docherty, A.; Vladimirov, V.; Webb, B.; Riley, B.; Flint, J.; Kendler, K.; Bacanu, S.-A.

10.1101/373050 — bioinformatics — Posted on 2018-07-20

943 Hif-1alpha induced expression of Il-1beta protects against mycobacterial infection in zebrafish.

Ogryzko, N. V.; Lewis, A.; Wilson, H. L.; Meijer, A. H.; Renshaw, S. A.; Elks, P. M.

10.1101/306506 — immunology — Posted on 2018-07-20

944 The unique tropism of Mycobacterium leprae to the nasal epithelial cells can be explained by the mammalian cell entry protein 1A

FADLITHA, V. B.; YAMAMOTO, F.; IDRIS, I.; DAHLAN, H.; SATO, N.; AFTITAH, V. B.; FEBRIYANDA, A.; Fujimura, T.; TAKIMOTO, H.

10.1101/373324 — microbiology — Posted on 2018-07-20

945 Recent outbreaks of chikungunya virus (CHIKV) in Africa and Asia are driven by a variant carrying mutations associated with increased fitness for Aedes aegypti

Maljkovic Berry, I.; Eyase, F.; Pollett, S.; Konongoi, L. S.; Figueroa, K.; Ofula, V.; Koka, H.; Koskei, E.; Nyunja, A.; Mancuso, J. D.; Jarman, R. G.; Sang, R.

10.1101/373316 — evolutionary biology — Posted on 2018-07-20

946 Determinants of early afterdepolarization properties in ventricular myocyte models

Huang, X.; Song, Z.; Qu, Z.

10.1101/373266 — biophysics — Posted on 2018-07-20

947 Response to early drought stress and identification of QTLs controlling biomass production under drought in pearl millet

Debieu, M.; Sine, B.; Passot, S.; Grondin, A.; Akata, E.; Gangashetty, P.; Vadez, V.; Gantet, P.; Fonceka, D.; Cournac, L.; Hash, C. T.; Kane, N.; Vigouroux, Y.; Laplaze, L.

10.1101/373233 — plant biology — Posted on 2018-07-20

948 Inhibition and excitation shape activity selection: effect of oscillations in a decision-making circuit

Bose, T.; Reina, A.; Marshall, J. A. R.

10.1101/373282 — neuroscience — Posted on 2018-07-20

949 Inferring the nature of missing heritability in human traits

Lopez-Cortegano, E.; Caballero, A.

10.1101/373290 — genetics — Posted on 2018-07-20

950 The cis-regulatory logic underlying abdominal Hox-mediated repression versus activation of regulatory elements in Drosophila

Zandvakili, A.; Uhl, J.; Campbell, I.; Song, Y. C.; Gebelein, B.

10.1101/373308 — developmental biology — Posted on 2018-07-20

951 The GRE Over the Entire Range of Scores Lacks Predictive Ability for PhD Outcomes in the Biomedical Sciences

Sealy, L.; Saunders, C.; Blume, J.; Chalkley, R.

10.1101/373225 — scientific communication and education — Posted on 2018-07-20

952 Association between activities outside work and presenteeism among Korean wage workers : using nationwide survey

Jung, S. W.; Lee, J.-H.; Lee, K.-J.

10.1101/373241 — epidemiology — Posted on 2018-07-20

953 How fluorescent tags modify oligomer size distributions of the Alzheimer-peptide Aβ(1-40)

Wägele, J.; De Sio, S.; Bruno, V.; Jochen, B.; Ott, M.

10.1101/372136 — biophysics — Posted on 2018-07-20

954 Large-Scale Structure and Individual Fingerprints of Locally Coupled Sleep Oscillations

Cox, R.; Mylonas, D. S.; Manoach, D. S.; Stickgold, R.

10.1101/289157 — neuroscience — Posted on 2018-07-20

955 Decline of auditory-motor speech processing in older adults with hearing loss

Panouilleres, M. T.; Mottonen, R.

10.1101/169235 — neuroscience — Posted on 2018-07-20

956 CRISPR/Cas9 Targeted Capture Of Mammalian Genomic Regions For Characterization By NGS

Slesarev, A.; Viswanathan, L.; Tang, Y.; Borgschulte, T.; Achtien, K.; Razafsky, D.; Onions, D.; Chang, A.; Cote, C.

10.1101/372987 — genomics — Posted on 2018-07-20

957 A biophysical model of molecular clusters: interplay of multivalency, membrane localization, steric hindrance, molecular flexibility and intracellular crowding

Chattaraj, A.; Youngstrom, M.; Loew, L. M.

10.1101/373084 — biophysics — Posted on 2018-07-20

958 G protein-coupled estrogen receptor is not required for sex determination or ovary function in zebrafish

Crowder, C. M.; Romano, S. N.; Gorelick, D. A.

10.1101/373092 — developmental biology — Posted on 2018-07-20

959 Glycolytic flux in Saccharomyces cerevisiae is dependent on RNA polymerase III and its negative regulator Maf1

Szatkowska, R.; Garcia-Albornoz, M.; Roszkowska, K.; Holman, S.; Hubbard, S.; Beynon, R.; Adamczyk, M.

10.1101/372946 — cell biology — Posted on 2018-07-20

960 In vitro and in vivo phasor analysis of stoichiometry and pharmacokinetics using short lifetime near-infrared dyes and time-gated imaging

Chen, S.-J. K.; Sinsuebphon, N.; Rudkouskaya, A.; Barroso, M.; Intes, X.; Michalet, X.

10.1101/212977 — bioengineering — Posted on 2018-07-19

961 Customizing material into embodied cap by sponge crab

Harada, K.; Kagaya, K.

10.1101/330787 — animal behavior and cognition — Posted on 2018-07-19

962 Base-pairing requirements for small RNA-mediated gene silencing of recessive self-incompatibility alleles in Arabidopsis halleri.

Burghgraeve, N.; Simon, S.; Barral, S.; Fobis-Loisy, I.; Holl, A.-C.; Ponitzki, C.; Schmitt, E.; Vekemans, X.; Castric, V.

10.1101/370239 — genetics — Posted on 2018-07-19

963 Reconciling disparate estimates of viral genetic diversity during human influenza infections

Xue, K. S.; Bloom, J. D.

10.1101/364430 — evolutionary biology — Posted on 2018-07-19

964 Adaptation of olfactory receptor abundances for efficient coding

Tesileanu, T.; Cocco, S.; Monasson, R.; Balasubramanian, V.

10.1101/255547 — neuroscience — Posted on 2018-07-19

965 Chromatin conformation analysis of primary patient tissue using a low input Hi-C method

Diaz Blanco, N.; Kruse, K.; Erdmann, T.; Staiger, A. M.; Ott, G.; Lenz, G.; Vaquerizas, J. M.

10.1101/372789 — genomics — Posted on 2018-07-19

966 Transcriptional crosstalk varies between regulatory strategies

Grah, R.; Friedlander, T.

10.1101/372672 — systems biology — Posted on 2018-07-19

967 Human hippocampal theta oscillations reflect sequential dependencies during spatial planning.

Kaplan, R.; Tauste Campo, A.; Bush, D.; King, J.; Principe, A.; Koster, R.; Ley-Nacher, M.; Rocamora, R.; Friston, K. J.

10.1101/372011 — neuroscience — Posted on 2018-07-19

968 Simultaneous multi-area recordings suggest a novel hypothesis about how attention improves performance

Ruff, D. A.; Cohen, M. R.

10.1101/372888 — neuroscience — Posted on 2018-07-19

969 Evolution of the embryonic cis-regulatory landscapes between divergent Phallusia and Ciona ascidians.

Madgwick, A.; Magri, M. S.; Dantec, C.; Gailly, D.; Fiuza, U.-M.; Guignard, L.; Hettinger, S.; Gomez-Skarmeta, J. L.; Lemaire, P.

10.1101/371005 — genomics — Posted on 2018-07-19

970 Chromatin conformation analysis of primary patient tissue using a low input Hi-C method

Diaz Blanco, N.; Kruse, K.; Erdmann, T.; Staiger, A. M.; Ott, G.; Lenz, G.; Vaquerizas, J. M. M.

10.1101/372789 — genomics — Posted on 2018-07-19

971 Single-Cell Analysis Identifies Thymic Maturation Delay in Growth-Restricted Neonatal Mice

Bacon, W. A.; Hamilton, R. S.; Yu, Z.; Kieckbuscha, J.; Hawkesa, D.; Krzaka, A.; Abell, C.; Colucci, F.; Charnock-Jones, D. S.

10.1101/372862 — developmental biology — Posted on 2018-07-19

972 Increased γ-Site H-Bond Stability Relates to Altered ε-Efficiency and Aβ Levels in the I45T Familial Alzheimer’s Disease Mutant of APP

Goetz, A.; Hoegel, P.; Silber, M.; Chaitoglou, I.; Luy, B.; Muhle-Goll, C.; Scharnagl, C.; Langosch, D.

10.1101/372698 — biophysics — Posted on 2018-07-19

973 Tissue architectural cues drive organ targeting of human tumor cells in zebrafish

Paul, C. D.; Bishop, K.; Devine, A.; Paine, E. L.; Staunton, J. R.; Thomas, S. M.; Miller Jenkins, L. M.; Morgan, N. Y.; Sood, R.; Tanner, K.

10.1101/233361 — biophysics — Posted on 2018-07-19

974 A Reconsideration of the Effect of Procyanidin on the Assembly of Collagen Type I

Wang, Y.; Jin, L.

10.1101/372847 — biochemistry — Posted on 2018-07-19

975 ERNIE: A Data Platform for Research Assessment

Keserci, S.; Davey, A.; Pico, A. R.; Korobskiy, D.; Chacko, G.

10.1101/371955 — scientific communication and education — Posted on 2018-07-19

976 Irrelevant speech disrupts memory more when spoken by a familiar talker

Kreitewolf, J.; Wöstmann, M.; Tune, S.; Plöchl, M.; Obleser, J.

10.1101/372508 — neuroscience — Posted on 2018-07-19

977 Do We See Scale?

Linton, P.

10.1101/371948 — neuroscience — Posted on 2018-07-19

978 A global genomic approach uncovers novel components for twitching motility-mediated biofilm expansion in Pseudomonas aeruginosa

Nolan, L. M.; Whitchurch, C. B.; Barquist, L.; Katrib, M.; Boinett, C. J.; Mayho, M.; Goulding, D.; Charles, I.; Filloux, A.; Parkhill, J.; Cain, A. K.

10.1101/372805 — genomics — Posted on 2018-07-19

979 Drought adaptation in nature by extensive genetic loss-of-function

Monroe, J. G.; Powell, T.; Price, N.; Mullen, J.; Howard, A.; Evans, K.; Lovell, J.; McKay, J.

10.1101/372854 — evolutionary biology — Posted on 2018-07-19

980 Maternal effects influence temperature-dependent offspring survival in Drosophila melanogaster

Mohan, S.; Groothuis, T.; Vinke, C.; Billeter, J.-C.

10.1101/372870 — ecology — Posted on 2018-07-19

981 Non-host and poor-host resistance against aphids may reside in different plant cell layers depending on the plant species-aphid species interaction

Escudero-Martinez, C.; Leybourne, D.; Bos, J.

10.1101/372839 — ecology — Posted on 2018-07-19

982 Diffusion of exit sites on the endoplasmic reticulum - a random walk on a shivering backbone

Stadler, L.; Speckner, K.; Weiss, M.

10.1101/372821 — biophysics — Posted on 2018-07-19

983 Reducing effects of particle adsorption to the air-water interface in cryoEM

Noble, A. J.; Wei, H.; Dandey, V. P.; Zhang, Z.; Tan, Y. Z.; Potter, C. S.; Carragher, B.

10.1101/288340 — biophysics — Posted on 2018-07-19

984 DoubletFinder: Doublet detection in single-cell RNA sequencing data using artificial nearest neighbors

McGinnis, C. S.; Murrow, L. M.; Gartner, Z. J.

10.1101/352484 — bioinformatics — Posted on 2018-07-19

985 A different state of mind: neural activity related to volitionally up- versus downregulating cortical excitability

Ruddy, K. L.; Balsters, J.; Mantini, D.; Liu, Q.; Kassraian-Fard, P.; Enz, N.; Mihelj, E.; Subhash Chander, B.; Soekadar, S. R.; Wenderoth, N.

10.1101/370130 — neuroscience — Posted on 2018-07-19

986 Sensorimotor characteristics of sign translations modulate EEG when deaf signers read English

Quandt, L. C.; Kubicek, E.

10.1101/337170 — neuroscience — Posted on 2018-07-19

987 Oxytocin modulates the intrinsic dynamics between attention-related large scale networks

Xin, F.; Zhou, F.; Zhou, X.; Ma, X.; Geng, Y.; Zhao, W.; Yao, S.; Dong, D.; Biswal, B.; Kendrick, K.; Becker, B.

10.1101/371971 — neuroscience — Posted on 2018-07-19

988 CRISPR-bind: a simple, custom CRISPR/dCas9-mediated labeling of genomic DNA for mapping in nanochannel arrays

Zhang, D.; Chan, S.; Sugerman, K.; Lee, J.; Lam, E. T.; Bocklandt, S.; Cao, H.; Hastie, A. R.

10.1101/371518 — genomics — Posted on 2018-07-19

989 Methanomethylophilus alvus Mx1201 provides basis for mutual orthogonal pyrrolysyl tRNA/aminoacyl-tRNA synthetase pairs in mammalian cells

Meineke, B.; Heimgärtner, J.; Lafranchi, L.; Elsässer, S. J.

10.1101/371757 — synthetic biology — Posted on 2018-07-19

990 Multivariate Stochastic Volatility Modeling of Neural Data

Phan, T. D.; Wachter, J. A.; Kahana, M. J.

10.1101/371203 — neuroscience — Posted on 2018-07-19

991 First- and second-order contributions to depth perception in anti-correlated random dot stereograms

Asher, J. M.; Hibbard, P. B.

10.1101/372169 — neuroscience — Posted on 2018-07-19

992 Evidence for an Integrated Gene Repression Mechanism based on mRNA Isoform Switching in Human Cells

Hollerer, I.; Barker, J. C.; Jorgensen, V.; Tresenrider, A.; Dugast-Darzacq, C.; Darzacq, X.; Chan, L. Y.; Tjian, R.; Unal, E.; Brar, G. A.

10.1101/264721 — genetics — Posted on 2018-07-19

993 Integration and modularity in Procrustes shape data: is there a risk of spurious results?

Cardini, A.

10.1101/371187 — evolutionary biology — Posted on 2018-07-19

994 New criteria for sympatric speciation in the genomic era

Richards, E.; Servedio, M.; Martin, C.

10.1101/367623 — evolutionary biology — Posted on 2018-07-19

995 The Neutral Metaorganism

Sieber, M.; Pita, L.; Weiland-Bräuer, N.; Dirksen, P.; Wang, J.; Mortzfeld, B.; Franzenburg, S.; Schmitz, R. A.; Baines, J. F.; Fraune, S.; Hentschel, U.; Schulenburg, H.; Bosch, T. C. G.; Traulsen, A.

10.1101/367243 — ecology — Posted on 2018-07-19

996 Phosphorylation of Arp2 is not essential for Arp2/3 complex activity in fission yeast

Epstein, A. E.; Espinoza Sanchez, S. V.; Pollard, T. D.

10.1101/372706 — cell biology — Posted on 2018-07-19

997 Towards personalized computer simulation of breast cancer treatment: a multi-scale pharmacokinetic and pharmacodynamic model informed by multi-type patient data

Lai, X.; Geier, O.; Fleischer, T.; Garred, O.; Borgen, E. F.; Funke, S.; Kumar, S.; Rognes, M. E.; Seierstad, T.; Boerresen-Dale, A.-L.; Kristensen, V. N.; Engebraaten, O.; Kohn-Luque, A.; Frigessi, A.

10.1101/371369 — cancer biology — Posted on 2018-07-19

998 Overview of the SAMPL6 host-guest binding affinity prediction challenge

Rizzi, A.; Murkli, S.; McNeill, J. N.; Yao, W.; Sullivan, M.; Gilson, M. K.; Chiu, M. W.; Isaacs, L.; Gibb, B. C.; Mobley, D. L.; Chodera, J. D.

10.1101/371724 — biophysics — Posted on 2018-07-19

999 TGFam-Finder: An optimal solution for target-gene family annotation in eukaryotic genomes

Kim, S.; Cheong, K.; Park, J.; Kim, M.-S.; Kim, J.-H.; Seo, M.-K.; Kwon, S.-H.; Kim, Y.-M.; Koo, N.; Kim, K.-S.; Oh, N.; Kim, K.-T.; Jeon, J.; Kim, H.; Lee, Y.-Y.; Sohn, K.-H.; McCann, H.; Ye, S.-K.; Park, K.-S.; Lee, Y.-H.; Choi, D.

10.1101/372433 — bioinformatics — Posted on 2018-07-19

1000 Multi-omic and multi-view clustering algorithms: review and cancer benchmark

Rappoport, N.; Shamir, R.

10.1101/371120 — bioinformatics — Posted on 2018-07-19

1001 Systems analysis by mass cytometry identifies susceptibility of latent HIV-infected T cells to targeting of p38 and mTOR pathways

Fong, L. E.; Bass, V. L.; Spudich, S.; Miller-Jensen, K.

10.1101/371922 — systems biology — Posted on 2018-07-19

1002 Luigi: Large-scale histopathological image retrieval system using deep texture representations

Komura, D.; Fukuta, K.; Tominaga, K.; Kawabe, A.; Koda, H.; Suzuki, R.; Konishi, H.; Umezaki, T.; Harada, T.; Ishikawa, S.

10.1101/345785 — pathology — Posted on 2018-07-19

1003 A genome-wide association study of mitochondrial DNA copy number in two population-based cohorts

Guyatt, A. L.; Brennan, R. R.; Burrows, K.; Guthrie, P. A. I.; Ascione, R.; Ring, S. M.; Gaunt, T. R.; Pyle, A.; Cordell, H. J.; Lawlor, D. A.; Chinnery, P.; Hudson, G.; Rodriguez, S.

10.1101/372177 — genomics — Posted on 2018-07-19

1004 Aminoglycoside ribosome interactions reveal novel conformational states at ambient temperature

O'Sullivan, M. E.; Poitevin, F.; Sierra, R. G.; Gati, C.; Dao, E. H.; Rao, Y.; Aksit, F.; Ciftci, H.; Corsepius, N.; Greenhouse, R.; Hayes, B.; Hunter, M. S.; Liang, M.; McGurk, A.; Mbgam, P.; Obrinsky, T.; Pardo-Avila, F.; Seaberg, M.; Cheng, A. G.; Ricci, A. J.; DeMirci, H.

10.1101/372144 — biophysics — Posted on 2018-07-19

1005 Assessing taxonomic metagenome profilers with OPAL

Meyer, F.; Bremges, A.; Belmann, P.; Janssen, S.; McHardy, A. C.; Koslicki, D.

10.1101/372680 — bioinformatics — Posted on 2018-07-19

1006 Defining common principles of gene co-expression refines molecular stratification in cancer

Care, M. A.; Westhead, D. R.; Tooze, R. M.

10.1101/372557 — bioinformatics — Posted on 2018-07-19

1007 RecNW: A fast pairwise aligner for targeted sequencing

Yahi, A.; Lappalainen, T.; Mohammadi, P.; Tatonetti, N.

10.1101/371989 — bioinformatics — Posted on 2018-07-19

1008 Architecture of functional lateralisation in the human brain

Karolis, V.; Corbetta, M.; Thiebaut de Schotten, M.

10.1101/372300 — neuroscience — Posted on 2018-07-19

1009 Effects of early life stress on biochemical indicators of the dopaminergic system: a 3 level meta-analysis of rodent studies

Bonapersona, V.; Joels, M.; Sarabdjitsingh, R.

10.1101/372441 — neuroscience — Posted on 2018-07-19

1010 Ventromedial prefrontal cortex is not critical for behavior change without external reinforcement

Aridan, N.; Pelletier, G.; Fellows, L.; Schonberg, T.

10.1101/372185 — neuroscience — Posted on 2018-07-19

1011 Differential morphological changes in response to environmental stimuli in a fungal plant pathogen

Francisco, C. S.; Ma, X.; Zwyssig, M. M.; McDonald, B. A.; Palma-Guerrero, J.

10.1101/372078 — microbiology — Posted on 2018-07-19

1012 Genetic evidence for two carbon fixation pathways in symbiotic and free-living bacteria: The Calvin-Benson-Bassham cycle and the reverse tricarboxylic acid cycle

Rubin Blum, M.; Dubilier, N.; Kleiner, M.

10.1101/363564 — microbiology — Posted on 2018-07-19

1013 Quantifying the contribution of four resistance mechanisms to ciprofloxacin minimum inhibitory concentration in Escherichia coli: a systematic review

van der Putten, B. C.; Pasquini, G.; Remondini, D.; Janes, V. A.; Matamoros, S.; Schultsz, C.

10.1101/372086 — microbiology — Posted on 2018-07-19

1014 Geographic and climatic drivers of reproductive assurance in Clarkia pulchella

Bontrager, M.; Muir, C. D.; Angert, A.

10.1101/372375 — ecology — Posted on 2018-07-19

1015 The Role of Proton Transport in Gating Current in a Voltage Gated Ion Channel, as Shown by Quantum Calculations

Kariev, A. M.; Green, M. E.

10.1101/371914 — biophysics — Posted on 2018-07-19

1016 A comprehensive suite of measures to quantify cell shape and actin organization

Alizadeh, E.; Xu, W.; Castle, J.; Foss, J.; Prasad, A.

10.1101/372755 — bioengineering — Posted on 2018-07-19

1017 Engineered cell-to-cell signalling within growing bacterial cellulose pellicles

Walker, K. T.; Goosens, V. J.; Das, A.; Graham, A. E.; Ellis, T.

10.1101/372797 — synthetic biology — Posted on 2018-07-19

1018 Development of an imaging toolbox to assess the therapeutic potential and biodistribution of macrophages in a mouse model of multiple organ dysfunction

Sharkey, J.; Ressel, L.; Brillant, N.; Wilm, B.; Park, K.; Murray, P.

10.1101/372482 — pharmacology and toxicology — Posted on 2018-07-19

1019 State-specific individualized functional networks form a predictive signature of brain state

Salehi, M.; Karbasi, A.; Barron, D. S.; Scheinost, D.; Constable, R. T.

10.1101/372110 — neuroscience — Posted on 2018-07-19

1020 Phase-dependent suppression of beta oscillations in Parkinson’s disease patients

Holt, A. B.; Kormann, E.; Gulberti, A.; Pötter-Nerger, M.; McNamara, C. G.; Cagnan, H.; Little, S.; Köppen, J. A.; Buhmann, C.; Westphal, M.; Gerloff, C.; Engel, A. K.; Brown, P.; Hamel, W.; Moll, C. K. E.; Sharott, A.

10.1101/372599 — neuroscience — Posted on 2018-07-19

1021 Neural signatures of classical conditioning during human sleep

Canales-Johnson, A. F.; Bekinschtein, T. A.; Arzi, A.

10.1101/372037 — neuroscience — Posted on 2018-07-19

1022 Large propulsion demands increase locomotor learning at the expense of step length asymmetry

Sombric, C.; Calvert, J. S.; Torres-Oviedo, G.

10.1101/372425 — neuroscience — Posted on 2018-07-19

1023 Evolutionarily informed deep learning methods: Predicting transcript abundance from DNA sequence

Washburn, J. D.; Mejia Guerra, M. K.; Ramstein, G.; Kremling, K. A.; Valluru, R.; Buckler, E. S.; Wang, H.

10.1101/372367 — molecular biology — Posted on 2018-07-19

1024 Implementation of the Water Framework Directive: Lessons learned and future perspectives for an ecologically meaningful classification of the status of Greek lakes, Mediterranean region

Moustaka-Gouni, M.; Sommer, U.; Ekonomou-Amilli, A.; Arhonditsis, G. B.; Katsiapi, M.; Papastergiadou, E.; Kormas, K. A.; Vardaka, E.; Karayanni, H.; Papadimitriou, T.

10.1101/371799 — ecology — Posted on 2018-07-19

1025 Compensatory and additive helper effects in the cooperatively breeding Seychelles warbler (Acrocephalus sechellensis).

van Boheemen, L. A.; Hammers, M.; Kingma, S. A.; Richardson, D. S.; Burke, T.; Komdeur, J.; Dugdale, H. L.

10.1101/372722 — animal behavior and cognition — Posted on 2018-07-19

1026 Translation Attenuation by Minocycline Increases Lifespan and Improves Proteostasis in Old Post-Stress-Responsive Organisms

Solis, G. M.; Kardakaris, R.; Valentine, E. R.; Bar-Peled, L.; Chen, A. L.; Blewett, M. M.; McCormick, M. A.; Williamson, J. R.; Kennedy, B. K.; Cravatt, B. F.; Petrascheck, M.

10.1101/372326 — physiology — Posted on 2018-07-19

1027 Subunit exchange enhances information retention by CaMKII in dendritic spines

Singh, D.; Bhalla, U. S.

10.1101/372748 — neuroscience — Posted on 2018-07-19

1028 Spatial frequency tuning of perceptual learning and transfer in global motion

Asher, J. M.; Romei, V.; Hibbard, P. B.

10.1101/372458 — neuroscience — Posted on 2018-07-19

1029 Transcriptome and histone epigenome of Plasmodium vivax salivary-gland sporozoites point to tight regulatory control and potential mechanisms for liver-stage differentiation.

Jex, A.; Mueller, I.; Kappe, S.; Mikolajcjak, S.; Sattabongkot, J.; Patrapuvich, R.; Lindner, S.; Flannery, E.; Koepfli, C.; Ansell, B.; Lerch, A.; Swearingen, K. E.; Emery-Corbin, S. J.; Charnaud, S.; Smith, J.; Merrienne, N.; Moritz, R. L.; Petter, M.; Duffy, M.; Chuenchob, V.

10.1101/145250 — microbiology — Posted on 2018-07-19

1030 Whole-Genome Genomics Correlates of Response To Anti-PD1 Therapy in Relapsed/Refractory Natural Killer/T Cell Lymphoma

Lim, J. Q.; Tang, T.; Cai, Q.-q.; Tan, D.; Nairismagi, M.-L.; Laurensia, Y.; Chia, B. K. H.; Peng, R.-J.; Iqbal, J.; Huang, D.; Song, T.; Pang, W. L.; Cheah, D. M. Z.; Ng, C. C. Y.; Rajasegaran, V.; Hong, H.; Tse, E.; Mow, B.; Cai, Q.-C.; Poon, L.-M.; Tan, J.; Grigoropoulos, N. F.; Goh, Y. T.; Phipps, C.; Rotzschke, O.; Cheng, C. L.; Lee, Y. S.; Loh, Y.; Tao, M.; Farid, M.; Au-Yeung, R.; Chan, T. S.-Y.; Ng, S.-B.; Kwong, Y.-L.; Hwang, W.; Chng, W.-J.; Tousseyn, T.; Tan, P.; Teh, B. T.; Khor, C. C.; Rozen, S.; Bei, J.-X.; Lin, T.; Lim, S. T.; Ong, C. K.

10.1101/372383 — genomics — Posted on 2018-07-19

1031 YB-1 Is Critical For The Genesis And Progression Of KRAS Mutated Human Breast Cancer

Lefort, S.; El-Naggar, A.; Tan, S.; Colborne, S.; Negri, G. L.; Pellacani, D.; Hirst, M.; Gusterson, B.; Morin, G. B.; Sorensen, P. H.; Eaves, C. J.

10.1101/372524 — cancer biology — Posted on 2018-07-19

1032 Nepotism masks evidence for reciprocity in cooperation networks

Carter, G.; Schino, G.; Farine, D.

10.1101/372516 — animal behavior and cognition — Posted on 2018-07-19

1033 A systematic review of Hepatitis B virus (HBV) drug and vaccine escape mutations in Africa: a call for urgent action

Mokaya, J.; McNaughton, A. L.; Hadley, M.; Beloukas, A.; Geretti, A.-M.; Goedhals, D.; Matthews, P. C.

10.1101/258350 — epidemiology — Posted on 2018-07-19

1034 Poor codon optimality as a signal to degrade transcripts with frameshifts

Schikora Tamarit, M. A.; Carey, L.

10.1101/345595 — genomics — Posted on 2018-07-19

1035 CONSERVATION AND VARIATIONS OF BIMODAL HoxD GENE REGULATION DURING TETRAPOD LIMB DEVELOPMENT

Yakushiji-Kaminatsui, N.; Lopez-Delisle, L.; Bolt, C. C.; Andrey, G.; Beccari, L.; Duboule, D.

10.1101/372664 — developmental biology — Posted on 2018-07-19

1036 The Feeding Connectome: Convergence of Monosynaptic and Polysynaptic Sensory Paths onto Common Motor Outputs

Miroschnikow, A.; Schlegel, P.; Schoofs, A.; Hueckesfeld, S.; Li, F.; Schneider-Mizell, C. M.; Fetter, R. D.; Truman, J.; Cardona, A.; Pankratz, M. J.

10.1101/368878 — neuroscience — Posted on 2018-07-19

1037 SLIC-CAGE: high-resolution transcription start site mapping using nanogram-levels of total RNA

Cvetesic, N.; Leitch, H. G.; Borkowska, M.; Müller, F.; Carninci, P.; Hajkova, P.; Lenhard, B.

10.1101/368795 — genomics — Posted on 2018-07-19

1038 Mutational signature analysis of Asian OSCCs reveals novel mutational signature with exceptional sequence context specificity

Boot, A.; Ng, A. W. T.; Chong, F. T.; Tan, D. S. W.; Iyer, N. G.; Rozen, S. G.

10.1101/368753 — genomics — Posted on 2018-07-19

1039 Loss of synteny to conserved noncoding elements impact the fetus-specific gene expression in mammalian brain

Bagadia, M.; Chandradoss, K. R.; Jain, Y.; Singh, H.; Lal, M.; Sandhu, K. S.

10.1101/127563 — genomics — Posted on 2018-07-19

1040 Nucleotide-pair encoding of 16S rRNA sequences for host phenotype and biomarker detection

Asgari, E.; Münch, P. C.; Lesker, T. R.; McHardy, A. C.; Mofrad, M. R. K.

10.1101/334722 — bioinformatics — Posted on 2018-07-19

1041 Zebrafish duox mutations provide a model for human congenital hypothyroidism

Chopra, K.; Ishibashi, S.; Amaya, E.

10.1101/372003 — developmental biology — Posted on 2018-07-19

1042 Extreme allelic heterogeneity at a Caenorhabditis elegans beta-tubulin locus explains natural resistance to benzimidazoles

Hahnel, S. R.; Zdraljevic, S.; Rodriguez, B. C.; Zhao, Y.; McGrath, P. T.; Andersen, E. C.

10.1101/372623 — genetics — Posted on 2018-07-19

1043 The respiratory microbiome and susceptibility to influenza virus infection

Lee, K. H.; Gordon, A.; Shedden, K.; Kuan, G.; Ng, S.; Balmaseda, A.; Foxman, B.

10.1101/372649 — epidemiology — Posted on 2018-07-19

1044 CONSERVATION AND VARIATIONS OF BIMODAL HoxD GENE REGULATION DURING TETRAPOD LIMB DEVELOPMENT

Yakushiji-Kaminatsui, N.; Lopez-Delisle, L.; Bolt, C. C.; Andrey, G.; Beccari, L.; Duboule, D.

10.1101/372664 — developmental biology — Posted on 2018-07-19

Baker, C.; Ebsch, C.; Lampl, I.; Rosenbaum, R.

10.1101/372607 — neuroscience — Posted on 2018-07-19

1046 Caspase-mediated cleavage of Murine Norovirus NS1/2 potentiates apoptosis and is required for persistent infection

Robinson, B. A.; McCune, B. T.; Peters, A. M.; Nice, T.

10.1101/372615 — microbiology — Posted on 2018-07-19

1047 Simulated trawling: Exhaustive swimming followed by extreme crowding as contributing reasons to variable fillet quality in trawl-caught Atlantic cod (Gadus morhua)

SVALHEIM, R. A.; Aas-Hansen, O.; Heia, K.; Drangsholt-Karlsson, A.; Olsen, S.-H.; Johnsen, H. K.

10.1101/372581 — physiology — Posted on 2018-07-19

1048 The distribution of large floating seagrass (Zostera marina) clumps in northern temperate zones of Bohai Bay in the Bohai Sea, China

Xu, M.; Zhou, y.; Zhang, T.; Zhang, l. y.

10.1101/372565 — ecology — Posted on 2018-07-19

1049 Requirements for efficient cotranscriptional regulatory switching in designed variants of the Bacillus subtilis pbuE adenine-responsive riboswitch

Drogalis, L. K.; Batey, R. T.

10.1101/372573 — biochemistry — Posted on 2018-07-19

1050 A randomised controlled trial of an Intervention to Improve Compliance with the ARRIVE guidelines (IICARus)

Hair, K.; Macleod, M. R.; Sena, E. S.; IICARus Collaboration,

10.1101/370874 — scientific communication and education — Posted on 2018-07-19

1051 Applying Inter-rater Reliability to Improve Consistency in Classifying PhD Career Outcomes

Stayart, C. A.; Brandt, P.; Brown, A.; Hutto, T.; Layton, R.; Petrie, K. A.; Flores-Kim, E. N.; Pena, C. G.; Fuhrmann, C. N.; Monsalve, G. C.

10.1101/370783 — scientific communication and education — Posted on 2018-07-19

1052 Making headlines: An analysis of US government-funded cancer research mentioned in online media

Maggio, L. A.; Ratcliff, C. L.; Krakow, M.; Moorhead, L. L.; Enkhbayar, A.; Alperin, J. P.

10.1101/370973 — scientific communication and education — Posted on 2018-07-19

1053 Mutational signature analysis of Asian OSCCs reveals novel mutational signature with exceptional sequence context specificity

Boot, A.; Ng, A. W. T.; Chong, F. T.; Tan, D. S. W.; Iyer, N. G.; Rozen, S. G.

10.1101/368753 — genomics — Posted on 2018-07-19

1054 Live imaging of Aiptasia larvae, a model system for studying coral bleaching, using a simple microfluidic device

Van Treuren, W.; Brower, K.; Labanieh, L.; Hunt, D.; Lensch, S.; Cruz, B.; Cartwright, H. N.; Tran, C.; Fordyce, P. M.

10.1101/370478 — ecology — Posted on 2018-07-19

1055 Metabolic deregulation in prostate cancer

Srihari, S.; Tattam, P.; Simpson, R.; Smith, E.

10.1101/371567 — bioinformatics — Posted on 2018-07-18

1056 The impact of 10-valent Pneumococcal Conjugate Vaccine on the incidence of radiologically-confirmed pneumonia and clinically-defined pneumonia in Kenyan children.

Silaba, M.; Ooko, M.; Bottomley, C.; Sande, J.; Benamore, R.; Park, K.; Ignas, J.; Maitland, K.; Mturi, N.; Makumi, A.; Otiende, M.; Kagwanja, S.; Safari, S.; Ochola, V.; Bwanaali, T.; Bauni, E.; Gleeson, F.; Deloria Knoll, M.; Adetifa, I.; Marsh, K.; Williams, T. N.; Kamau, T.; Sharif, S.; Levine, O. S.; Hammitt, L. L.; Scott, J. A. G.

10.1101/369686 — epidemiology — Posted on 2018-07-18

1057 Drug susceptibility testing and mortality in patients treated for tuberculosis in high-burden countries

Zuercher, K.; Ballif, M.; Fenner, L.; Borrell, S.; Keller, P. M.; Gnokoro, J.; Marcy, O.; Yotebieng, M.; Diero, L.; Carter, E. J.; Rockwood, N.; Wilkinson, R. J.; Cox, H.; Ezati, N.; Abimiku, A. l. G.; Collantes, J.; Avihingsanon, A.; Kawkitinarong, K.; Reinhard, M.; Hoemke, R.; Huebner, R.; Gagneux, S.; Boettger, E. C.; Egger, M.; on behalf of the International Epidemiology Databases to Evaluate AIDS (IeDEA),

10.1101/370056 — epidemiology — Posted on 2018-07-18

1058 A web-based, branching logic questionnaire for the automated classification of migraine

Kaiser, E. A.; Igdalova, A.; Aguirre, G. K.; Cucchiara, B.

10.1101/369827 — epidemiology — Posted on 2018-07-18

1059 Impact of 10-valent pneumococcal conjugate vaccine on invasive pneumococcal disease and nasopharyngeal carriage in Kenya

Hammitt, L.; Etyang, A. O.; Morpeth, S. C.; Ojal, J.; Mutuku, A.; Mturi, N.; Moisi, J.; Adetifa, I.; Karani, A.; Akech, D.; Otiende, M.; Bwanaali, T.; Wafula, J.; Mataza, C.; Mumbo, E.; Tabu, C.; Deloria Knoll, M.; Bauni, E.; Marsh, K.; Williams, T.; Kamau, T.; Sharif, S.; Levine, O.; Scott, J. A. G.

10.1101/369876 — epidemiology — Posted on 2018-07-18

1060 The merits of sustaining pneumococcal vaccination after transitioning from Gavi support - a modelling and cost-effectiveness study for Kenya

Ojal, J.; Griffiths, U.; Hammitt, L. L.; Adetifa, I.; Akech, D.; Tabu, C.; Scott, J. A. G.; Flasche, S.

10.1101/369603 — epidemiology — Posted on 2018-07-18

1061 Vaccination and the evolution of seasonal influenza

Wen, F. T.; Malani, A.; Cobey, S.

10.1101/162545 — evolutionary biology — Posted on 2018-07-18

1062 Regeneration of the zebrafish retinal pigment epithelium after widespread genetic ablation

Hanovice, N.; Leach, L.; Slater, K.; Gabriel, A.; Romanovicz, D.; Shao, E.; Collery, R.; Burton, E.; Lathrop, K.; Link, B.; Gross, J.

10.1101/372151 — developmental biology — Posted on 2018-07-18

1063 Conserved and divergent development of brainstem vestibuloacoustic nuclei

Lipovsek, M.; Wingate, R. J.

10.1101/372243 — developmental biology — Posted on 2018-07-18

1064 Spatial Control of Neuronal Metabolism Through Glucose-Mediated Mitochondrial Transport Regulation

Agrawal, A.; Pekkurnaz, G.; Koslover, E. F.

10.1101/372284 — biophysics — Posted on 2018-07-18

1065 Identifying, understanding, and correcting technical biases on the sex chromosomes in next-generation sequencing data

Webster, T. H.; Couse, M.; Grande, B. M.; Karlins, E.; Phung, T. N.; Richmond, P. A.; Whitford, W.; Wilson Sayres, M. A.

10.1101/346940 — bioinformatics — Posted on 2018-07-18

1066 Structure analysis of human Prion protein involved in Sporadic Fatal Insomnia

Camp, P. J.; Tabaee Damavandi, P.; Pickersgill, R. W.; Dove, M. T.

10.1101/314625 — bioinformatics — Posted on 2018-07-18

1067 Maize defective kernel5 is a bacterial tamB homolog required for chloroplast envelope biogenesis

Zhang, J.; Wu, S.; Boehlein, S. K.; McCarty, D. R.; Song, G.; Walley, J. W.; Myers, A.; Settles, A. M.

10.1101/372045 — plant biology — Posted on 2018-07-18

1068 The high abortion cost of human reproduction

Rice, W. R.

10.1101/372193 — physiology — Posted on 2018-07-18

1069 Efficient propagation of misfolded tau between individual neurons occurs in absence of degeneration

Hallinan, G. I.; Vargas-Caballero, M.; West, J.; Deinhardt, K.

10.1101/372029 — neuroscience — Posted on 2018-07-18

1070 Macroecological relationships in the dynamics of gut microbiota

Ji, B. W.; Sheth, R. U.; Dixit, P. D.; Vitkup, D.

10.1101/370676 — microbiology — Posted on 2018-07-18

1071 Modern wolves trace their origin to a late Pleistocene expansion from Beringia

Loog, L.; Thalmann, O.; Sinding, M.-H. S.; Schuenemann, V. J.; Perri, A.; Germonpre, M.; Bocherens, H.; Witt, K. E.; Samaniego Castruita, J. A.; Velasco, M. S.; Lundstrom, I. K. C.; Wales, N.; Sonet, G.; Frantz, L.; Schroeder, H.; Budd, J.; Jimenez, E.-L.; Fedorov, S.; Gasparyan, B.; Kandel, A. W.; Laznickova-Galetova, M.; Napierala, H.; Uerpmann, H.-P.; Nikolskiy, P. A.; Pavlova, E. Y.; Pitulko, V. V.; Herzig, K.-H.; Malhi, R. S.; Willerslev, E.; Hansen, A. J.; Dobney, K.; Gilbert, M. T. P.; Krause, J.; Larson, G.; Eriksson, A.; Manica, A.

10.1101/370122 — evolutionary biology — Posted on 2018-07-18

1072 qPCR assays for the detection of two western North American freshwater mussel species, Anodonta nuttalliana and Anodonta oregonensis, from environmental DNA

Rodgers, T. W.; Mock, K. E.

10.1101/372219 — zoology — Posted on 2018-07-18

1073 HP1B is a euchromatic Drosophila HP1 homolog with links to metabolism

Mills, B. B.; Thomas, A. D.; Riddle, N. C.

10.1101/372094 — genetics — Posted on 2018-07-18

1074 An ancient genome duplication in the speciose reef-building coral genus, Acropora

Mao, Y.; Shinzato, C.; Satoh, N.

10.1101/366435 — evolutionary biology — Posted on 2018-07-18

1075 Nested phylogenetic conflicts and deep phylogenomics in plants

Smith, S. A.; Walker, J. F.; Brown, J.; Walker-Hale, N.

10.1101/371930 — evolutionary biology — Posted on 2018-07-18

1076 Studies of NH4+ and NO3- uptake ability of subalpine plants and resource-use strategy identified by their functional traits.

Grassein, F.; Legay, N.; Arnoldi, C.; Raphael, S.; Philippe, L.; Lavorel, S.; Clement, J.-C.

10.1101/372235 — ecology — Posted on 2018-07-18

1077 Zebrafish duox mutations provide a model for human congenital hypothyroidism

Amaya, E.; Ishibashi, S.; Chopra, K.

10.1101/372003 — developmental biology — Posted on 2018-07-18

1078 Mouse REC114 is essential for meiotic DNA double-strand break formation and forms a complex with MEI4

Kumar, R.; Oliver, C.; Brun, C.; Juarez-Martinez, A. B.; Tarabay, Y.; Kaldec, j.; de Massy, B.

10.1101/372052 — molecular biology — Posted on 2018-07-18

1079 Exploring the unmapped DNA and RNA reads in a songbird genome

Laine, V.; Gossmann, T. I.; van Oers, K.; Visser, M. E.; Groenen, M. A. M.

10.1101/371963 — genomics — Posted on 2018-07-18

1080 Genome-wide scan and fine-mapping of rare nonsynonymous associations implicates intracellular lipolysis genes in fat distribution and cardio-metabolic risk

Lotta, L. A.; Dong, L.; Li, C.; Patel, S.; Stewart, I. D.; Lim, K.; Day, F. R.; Wheeler, E.; Glastonbury, C. A.; Van de Streek, M.; Sharp, S. J.; Luan, J.; Bowker, N.; Schweiger, M.; Wittemans, L. B.; Kerrison, N.; Cai, L.; Lucarelli, D. M.; Barroso, I.; McCarthy, M. I.; Scott, R. A.; Zechner, R.; Perry, J. R.; Saudek, V.; Small, K. S.; O'Rahilly, S.; Wareham, N. J.; Savage, D. B.; Langenberg, C.

10.1101/372128 — genetics — Posted on 2018-07-18

1081 The equivocal \"mean age of parents in a cohort\"

Bienvenu, F.

10.1101/371245 — ecology — Posted on 2018-07-18

1082 Analysis and Engineering of Substrate Shuttling by the Acyl Carrier Protein (ACP) in Fatty Acid Synthases (FASs)

Rossini, E.; Gajewski, J.; Klaus, M.; Hummer, G.; Grininger, M.

10.1101/371880 — bioengineering — Posted on 2018-07-18

1083 A hippocampal model for behavioral time acquisition and fast bidirectional replay of spatio-temporal memory sequences

Matheus Gauy, M.; Lengler, J.; Einarsson, H.; Meier, F.; Weissenberger, F.; Fatih Yanik, M.; Steger, A.

10.1101/343988 — neuroscience — Posted on 2018-07-18

1084 Dynamics of PAR proteins explain the oscillation and ratcheting mechanisms in dorsal closure

Durney, C. H.; Harris, T. J. C.; Feng, J. J.

10.1101/348540 — developmental biology — Posted on 2018-07-18

1085 Bayesian Analysis of Retinotopic Maps

Benson, N. C.; Winawer, J.

10.1101/325597 — neuroscience — Posted on 2018-07-18

1086 Mechanosensitive clathrin platforms anchor desmin intermediate filaments in skeletal muscle

Franck, A.; Laine, J.; Moulay, G.; Trichet, M.; Gentil, C.; Fongy, A.; Bigot, A.; Benkhelifa-Ziyyat, S.; Lacene, E.; Thao Bui, M.; Brochier, G.; Guicheney, P.; Sacconi, S.; Mouly, V.; Romero, N. B.; Coirault, C.; Bitoun, M.; Vassilopoulos, S.

10.1101/321885 — cell biology — Posted on 2018-07-18

1087 Discovery and Characterization of Novel Lignocellulose-Degrading Enzymes from the Porcupine Microbiome by Synthetic Metagenomics

Thornbury, M.; Sicheri, J.; Slaine, P.; Getz, L.; Finlayson-Trick, E.; Cook, J.; Guinard, C.; Boudreau, N.; Jakeman, D.; Rohde, J.; McCormick, C.

10.1101/288985 — synthetic biology — Posted on 2018-07-18

1088 Natural variation in stomata size contributes to the local adaptation of water-use efficiency in Arabidopsis thaliana

Dittberner, H.; Korte, A.; Mettler-Altmann, T.; Weber, A.; Monroe, G.; de Meaux, J.

10.1101/253021 — plant biology — Posted on 2018-07-18

1089 Computational investigation of protein surface polarity and pH-dependence: application to antibodies shows that antibody-antigen interfaces tend to be relatively polar.

Hebditch, M.; Warwicker, J.

10.1101/345231 — bioinformatics — Posted on 2018-07-18

1090 Not one hormone or another: Aggression differentially affects progesterone and testosterone in a South American ovenbird

Adreani, N. M.; Goymann, W.; Mentesana, L.

10.1101/371690 — physiology — Posted on 2018-07-18

1091 A neural basis of probabilistic computation in visual cortex

Walker, E. Y.; Cotton, R. J.; Ma, W. J.; Tolias, A. S.

10.1101/365973 — neuroscience — Posted on 2018-07-18

1092 Characterization of the role of glycine lipids in Bacteroides thetaiotaomicron

Lynch, A.; Tammireddy, S. R.; Doherty, M. K.; Whitfield, P. D.; Clarke, D.

10.1101/371807 — microbiology — Posted on 2018-07-18

1093 Specific histone modifications associate with alternative exon selection during mammalian development

Hu, Q.; Greene, C.; Heller, E.

10.1101/361816 — bioinformatics — Posted on 2018-07-18

1094 The ecological cocktail party: Measuring brain activity during an auditory oddball task with background noise

Scanlon, J. E. M.; Cormier, D. L.; Townsend, K. A.; Kuziek, J. W. P.; Mathewson, K. E.

10.1101/371435 — neuroscience — Posted on 2018-07-18

1095 Complementary topology of maintenance and manipulation brain networks in working memory

Davis, S. W.; Crowell, C.; Beynel, L.; Deng, L.; Lakhlani, D.; Hilbig, S.; Lim, W.; Nguyen, D.; Palmer, H.; Peterchev, A.; Luber, B.; Lisanby, S.; Appelbaum, G.; Cabeza, R.

10.1101/371294 — neuroscience — Posted on 2018-07-18

1096 Entomophthovirus: An insect-derived iflavirus that infects a behavior manipulating fungal pathogen of dipterans

Coyle, M. C.; Elya, C. N.; Bronski, M. J.; Eisen, M. B.

10.1101/371526 — microbiology — Posted on 2018-07-18

1097 Programmatic Detection of Diploid-Triploid Mixoploidy via Whole Genome Sequencing

Holt, J. M.; Birch, C. L.; Brown, D. M.; Cogan, J.; Hamid, R.; Dorrani, N.; Herzog, M. R.; Lee, H.; Martinez, J.; Undiagnosed Diseases Network, ; Dipple, K.; Vilain, E.; Phillips, J.; Worthey, E. A.

10.1101/371468 — genomics — Posted on 2018-07-18

1098 Skull base invasive low-grade meningiomas, a distinct genetic subgroup: A microarray gene expression profile analysis.

Sakuma, J.; Fujii, M.; Kishida, Y.; Iwami, K.; Oda, K.; Iwatate, K.; Ichikawa, M.; Bakhit, M.; Sato, T.; Waguri, S.; Watanabe, S.; Saito, K.

10.1101/371716 — genomics — Posted on 2018-07-18

1099 Sex makes them sleepy: change in host reproductive status induces diapause in parasitoids

Tougeron, K.; Brodeur, J.; van Baaren, J.; Renault, D.; Le Lann, C.

10.1101/371385 — ecology — Posted on 2018-07-18

1100 A novel generic dictionary-based denoising method for improving noisy and densely packed nuclei segmentation in 3D time-lapse fluorescence microscopy images

Nasser, L.; Boudier, T.

10.1101/371641 — cell biology — Posted on 2018-07-18

1101 On the impact of competing intra- and intermolecular triplet-state quenching on photobleaching and photoswitching kinetics of organic fluorophores

Smit, J.; van der Velde, J.; Huang, J.; Trauschke, V.; Henrikus, S.; Chen, S.; Eleftheriadis, N.; Warszawik, E.; Herrmann, A.; Cordes, T.

10.1101/371443 — biophysics — Posted on 2018-07-18

1102 Metabolic deregulation in prostate cancer

Srihari, S.; Tattam, P.; Simpson, R.; Smith, E.

10.1101/371567 — bioinformatics — Posted on 2018-07-18

1103 Drugs modulating stochastic gene expression affect the erythroid differentiation process

Guillemin, A.; Duchesne, R.; Crauste, F.; Gonin-Giraud, S.; Gandrillon, O.

10.1101/371666 — systems biology — Posted on 2018-07-18

1104 Maternal immunity and antibodies to dengue promote Zika virus-induced microcephaly in fetuses

Rathore, A. P. S.; Saron, W. A. A.; Lim, T.; Jahan, N.; St. John, A.

10.1101/371864 — immunology — Posted on 2018-07-18

1105 The most primitive extant ancestor of organisms and discovery of definitive evolutionary equations

Sorimachi, K.

10.1101/371575 — evolutionary biology — Posted on 2018-07-18

1106 Universal MHC binding prediction

Phloyphisut, P.; Pornputtanapong, N.; Sriswasdi, S.; Chuangsuwanich, E.

10.1101/371591 — bioinformatics — Posted on 2018-07-18

1107 Comprehensive functional screening of taste sensation in vivo

Han, J.; Choi, M.

10.1101/371682 — neuroscience — Posted on 2018-07-18

1108 Bcl6 promotes neurogenic conversion through transcriptional repression of multiple self-renewal-promoting extrinsic pathways.

Bonnefont, J.; Tiberi, L.; van den Ameele, J.; Potier, D.; Gaber, Z.; Lin, X.; Bilheu, A.; Herpoel, A.; Velez Bravo, F.; Guillemot, F.; Aerts, S.; Vanderhaeghen, P.

10.1101/370999 — neuroscience — Posted on 2018-07-18

1109 γ-proteobacteria eject their polar flagella under nutrient depletion, retaining flagellar motor relic structures

Ferreira, J. L.; Gao, F. Z.; Rossmann, F. M.; Nans, A.; Brenzinger, S.; Hosseini, R.; Briegel, A.; Thormann, K. M.; Rosenthal, P. B.; Beeby, M.

10.1101/367458 — microbiology — Posted on 2018-07-18

1110 High-throughput retrieval of physical DNA for NGS-identifiable clones in phage display library

Noh, J.; Kim, O.; Jung, Y.; Han, H.; Kim, J.-E.; Kim, S.; Lee, S.; Park, J.; Jung, R. H.; Kim, S. i.; Park, J.; Han, J.; Lee, H.; Yoo, D. K.; Lee, A. C.; Kwon, E.; Ryu, T.; Chung, J.; Kwon, S.

10.1101/370809 — bioengineering — Posted on 2018-07-18

1111 Drosophila CaV2 Channels Harboring Human Migraine Mutations Cause Synapse Hyperexcitability That Can Be Suppressed By Inhibition Of A Ca2+ Store Release Pathway

Brusich, D. J.; Spring, A. M.; James, T. D.; Yeates, C. J.; Helms, T. H.; Frank, C. A.

10.1101/141366 — neuroscience — Posted on 2018-07-18

1112 Exploring tRNA gene cluster in archaea

Morgado, S.; Vicente, A.

10.1101/370668 — genomics — Posted on 2018-07-18

1113 Nocturnal expression of Crassulacean acid metabolism (CAM) genes predates the origin of CAM in the genus Yucca.

Heyduk, K.; Ray, J. N.; Ayyampalayam, S.; Moledina, N.; Borland, A.; Harding, S.; Tsai, C.-J.; Leebens-Mack, J.

10.1101/371344 — plant biology — Posted on 2018-07-18

1114 Topographical and spectral signatures of infant and adult movement artifacts in naturalistic EEG

Georgieva, S.; Lester, S.; Yilmaz, M.; Wass, S.; Leong, V.

10.1101/206029 — neuroscience — Posted on 2018-07-18

1115 Stout camphor tree genome fills gaps in understanding of flowering plant genome and gene family evolution

Chaw, S.-M.; Liu, Y.-C.; Wang, H.-Y.; Wu, Y.-W.; Lin, C.-Y. I.; Wu, C.-S.; Ke, H.-M.; Chang, L.-Y.; Hsu, C.-Y.; Yang, H.-T.; Sudianto, E.; Hsu, M.-H.; Wu, K.-P.; Wang, N.-N.; Leebens-Mack, J.; Tsai, I. J. J.

10.1101/371112 — genomics — Posted on 2018-07-18

1116 Variable costs of eavesdropping a green leaf volatile on two plant species in a common garden experiment

Freundlich, G. E.; Frost, C.

10.1101/370692 — ecology — Posted on 2018-07-18

1117 Comparative analysis of anther development in natural populations indicate premature degradation of sporogenous tissue as a cause of male sterility in Gaultheria fragrantissima

Langstang, W.; Kharshiing, E.; Venugopal, N.

10.1101/368886 — plant biology — Posted on 2018-07-18

1118 Chicken uric acid elimination via the uric acid transporters BCRP and MRP4 in the liver, kidneys, and intestines

Ding, X.; Wu, J.; Li, M.; Qian, S.; Ma, Y.; Fang, T.; Li, X.; Liu, H.; Feng, S.; Li, Y.; Wang, X.; Li, J.

10.1101/358994 — physiology — Posted on 2018-07-18

1119 MICU1 modulates MCU ion selectivity and tolerance to manganese stress

Wettmarshausen, J.; Goh, V.; Tripathi, U.; Leimpek, A.; Cheng, Y.; Pittis, A. A.; Gabaldon, T.; Mokranjac, D.; Perocchi, F.

10.1101/371419 — cell biology — Posted on 2018-07-18

1120 Alternative splicing and translation play important roles in parallel with transcriptional regulation during rice hypoxic germination

Chen, M.-X.; Zhu, F.-Y.; Wang, F.-Z.; Ye, N.-H.; Gao, B.; Chen, X.; Zhao, S.-S.; Fan, T.; Cao, Y.-Y.; Liu, T.-Y.; Su, Z.-Z.; Xie, L.-J.; Hu, Q.-J.; Wu, H.-J.; Xiao, S.; Zhang, J.; Liu, Y.-G.

10.1101/371583 — plant biology — Posted on 2018-07-18

1121 Transcriptome analysis of early stage of neurogenesis reveals temporal-specific gene network for preplate neuron differentiation and Cajal-Retzius cell specification

Li, J.; Sun, L.; Peng, X.-L.; Yu, X.-M.; Qi, S.-J.; Lu, Z. J.; Han, J.-D. J.; Shen, Q.

10.1101/331900 — neuroscience — Posted on 2018-07-18

1122 Immuno-suppressive Virus-like particles of Drosophila parasitoids derive from the domestication of a behaviour-manipulating virus relative

Di Giovanni, D.; Lepetit, D.; Boulesteix, M.; Ravallec, M.; Varaldi, J.

10.1101/342758 — evolutionary biology — Posted on 2018-07-18

1123 Modeling Cellular Resource Allocation Reveals Low Phenotypic Plasticity of C4 Plants and Infers Environments of C4 Photosynthesis Evolution

Sundermann, E.; Lercher, M.; Heckmann, D.

10.1101/371096 — plant biology — Posted on 2018-07-18

1124 Global DNA methylation remodeling during direct reprogramming of fibroblasts to neurons

Luo, C.; Lee, Q. Y.; Wapinski, O. L.; Castanon, R.; Nery, J. R.; Cullen, S. M.; Goodell, M. A.; Chang, H.; Wernig, M.; Ecker, J. R.

10.1101/371427 — neuroscience — Posted on 2018-07-18

1125 Estimates of Introgression as a Function of Pairwise Distances

Pfeifer, B.; Kapan, D. D.

10.1101/154377 — bioinformatics — Posted on 2018-07-18

1126 Native Mass Spectrometry Reveals the Conformational Diversity of the UVR8 Photoreceptor

Camacho, I. S.; Theisen, A.; Johannissen, L. O.; Diaz-Ramos, L. A.; Christie, J. M.; Jenkins, G. I.; Bellina, B.; Barran, P.; Jones, A. R.

10.1101/371658 — biochemistry — Posted on 2018-07-18

1127 Apigenin relaxes rat intrarenal arteries: involvement of Cl- channels and K+ channels

Jing, Y.; Dong, M.; Liu, Y.; Hou, X.; Guo, P.; Li, W.; Zhang, M.; Lv, J.

10.1101/371849 — pharmacology and toxicology — Posted on 2018-07-18

1128 Identification of salivary and plasma biomarkers for obesity in children by non-targeted metabolomic analysis

Goodson, J. M.; Hardt, M.; Hartman, M.-L.; Schulte, F.; Tavares, M.; Al-Mutawa, S.; Ariga, J.; Soparkar, P.; Behbehani, J.; Behbehani, K.; Razzaque, M.

10.1101/371815 — epidemiology — Posted on 2018-07-18

1129 Survival and development of potato psyllid (Hemiptera: Triozidae) on Convolvulaceae: effects of a plant-fungus symbiosis (Periglandula)

Kaur, N.; Cooper, W. R.; Duringer, J. M.; Badillo-Vargas, I. E.; Esparza-Diaz, G.; Rashed, A.; Horton, D.

10.1101/371823 — ecology — Posted on 2018-07-18

1130 25-HYDROXYL-CHOLESTEROL BINDS AND ENHANCE ANTI-VIRAL EFFECTS OF ZEBRAFISH MONOMERIC C-REACTIVE PROTEINS

Bello-Perez, M.; Falco, A.; Encinar, J. A.; novoa, b.; perez, l.; Coll, J.

10.1101/371856 — immunology — Posted on 2018-07-18

1131 Head-to-Head Comparison of Three Methods of Quantifying Competitive Fitness in C. elegans

Crombie, T. A.; Saber, S.; Saxena, A. S.; Egan, R.; Baer, C. F.

10.1101/371831 — evolutionary biology — Posted on 2018-07-18

1132 Plasmodium falciparum Niemann-Pick Type C1-Related Protein is a Druggable Target Required for Parasite Membrane Homeostasis

Istvan, E. S.; Das, S.; Bhatnagar, S.; Beck, J. R.; Owen, E.; LLinas, M.; Ganesan, S. M.; Niles, J. C.; Winzeler, E. A.; Vaidya, A. B.; Goldberg, D. E.

10.1101/371484 — microbiology — Posted on 2018-07-18

1133 Sulforaphane Alters the Acidification of the Vacuole to Trigger Cell Death

Wilcox, A.; Murphy, M.; Tucker, D.; Laprade, D.; Roussel, B.; Hallisey, V.; Chin, C.; Brass, A.; Austriaco, N.

10.1101/371534 — cell biology — Posted on 2018-07-18

1134 The splicing factor U2AF1 contributes to cancer progression through a non-canonical role in translation regulation

Palangat, M.; Anastsakis, D.; Liang, F.; Lindblad, K.; Bradley, R.; Hourigan, C.; Hafner, M.; Larson, D.

10.1101/371492 — cell biology — Posted on 2018-07-18

1135 Preservation of cellular nano-architecture by the process of chemical fixation for nanopathology

Zhou, X.; Almassalha, L.; Li, Y.; Eshein, A.; Cherkezyan, L.; Viswanathan, P.; Subramanian, H.; Szleifer, I.; Backman, V.

10.1101/371286 — biophysics — Posted on 2018-07-18

1136 Using SMOG 2 to simulate complex biomolecular assemblies

Levi, M.; Bandarkar, P.; Yang, H.; Wang, A.; Mohanty, U.; Noel, J. K.; Whitford, P. C.

10.1101/371617 — biophysics — Posted on 2018-07-18

1137 Short-term plasticity of the human adult visual cortex measured with 7T BOLD

Binda, P.; Kurzawski, J. W.; Lunghi, C.; Biagi, L.; Tosetti, M.; Morrone, M. C.

10.1101/323741 — neuroscience — Posted on 2018-07-17

1138 Computational complexity is an ultimate constraint on evolution

Kaznatcheev, A.

10.1101/187682 — evolutionary biology — Posted on 2018-07-17

1139 Hyperparameter-free optimizer of gradient-descent method incorporating unit correction and moment estimation

Yamada, K. D.

10.1101/348557 — bioinformatics — Posted on 2018-07-17

1140 Gene-regulatory independent functions for insect DNA methylation

Bewick, A. J.; Sanchez, Z.; Mckinney, E. C.; Moore, A. J.; Moore, P. J.; Schmitz, R. J.

10.1101/355669 — genetics — Posted on 2018-07-17

1141 Mitochondrial genetics of exceptional longevity in multigeneration matrilineages

Kerber, R. A.; O'Brien, E.; Munger, R.; Smith, K. R.; Cawthon, R. M.

10.1101/361899 — genetics — Posted on 2018-07-17

1142 A Computational Model of Bidirectional Axonal Growth in Micro-Tissue Engineered Neuronal Networks (micro-TENNs)

Marinov, T.; Yuchi, L.; Adewole, D. O.; Cullen, D. K.; Kraft, R. H.

10.1101/369843 — bioengineering — Posted on 2018-07-17

1143 MICU1 modulates MCU ion selectivity and tolerance to manganese stress

Perocchi, F.; Wettmarshausen, J.; Goh, V.; Tripathi, U.; Leimpek, A.; Cheng, Y.; Pittis, A. A.; Gabaldon, T.; Mokranjac, D.

10.1101/371419 — cell biology — Posted on 2018-07-17

1144 Metabolically activated macrophages in mammary adipose tissue link obesity to triple-negative breast cancer

Tiwari, P.; Blank, A.; Cui, C.; Schoenfelt, K.; Zhou, G.; Xu, Y.; Shah, A.; Khan, S.; Rosner, M. R.; Becker, L.

10.1101/370627 — cancer biology — Posted on 2018-07-17

1145 gpps: An ILP-based approach for inferringcancer progression with mutation losses fromsingle cell data

Ciccolella, S.; Soto Gomez, M.; Patterson, M.; Della Vedova, G.; Hajirasouliha, I.; Bonizzoni, P.

10.1101/365635 — cancer biology — Posted on 2018-07-17

1146 Classification of electrophysiological and morphological types in mouse visual cortex

Gouwens, N. W.; Sorensen, S. A.; Berg, J.; Lee, C.; Jarsky, T.; Ting, J.; Sunkin, S. M.; Feng, D.; Anastassiou, C.; Barkan, E.; Bickley, K.; Blesie, N.; Braun, T.; Brouner, K.; Budzillo, A.; Caldejon, S.; Casper, T.; Casteli, D.; Chong, P.; Crichton, K.; Cuhaciyan, C.; Daigle, T.; Dalley, R.; Dee, N.; Desta, T.; Dingman, S.; Doperalski, A.; Dotson, N.; Egdorf, T.; Fisher, M.; de Frates, R. A.; Garren, E.; Garwood, M.; Gary, A.; Gaudreault, N.; Godfrey, K.; Gorham, M.; Gu, H.; Habel, C.; Hadley, K.; Harrington, J.; Harris, J.; Henry, A.; Hill, D.; Josephsen, S.; Kebede, S.; Kim, L.; Kroll, M.;

10.1101/368456 — neuroscience — Posted on 2018-07-17

1147 A neuron-optimized CRISPR/dCas9 activation system for robust and specific gene regulation

Savell, K. E.; Bach, S. V.; Zipperly, M. E.; Revanna, J. S.; Goska, N. A.; Tuscher, J. J.; Duke, C. G.; Sultan, F. A.; Burke, J. N.; Williams, D. M.; Ianov, L.; Day, J. J.

10.1101/371500 — neuroscience — Posted on 2018-07-17

1148 Cell-type specific eQTL of primary melanocytes facilitates identification of melanoma susceptibility genes

Zhang, T.; Choi, J.; Kovacs, M. A.; Shi, J.; Xu, M.; NISC Comparative Sequencing Program, ; Melanoma Meta-Analysis Consortium, ; Goldstein, A. M.; Iles, M. M.; Duffy, D.; MacGregor, S.; Amundadottir, L. T.; Law, M. H.; Loftus, S. K.; Pavan, W. J.; Brown, K. M.

10.1101/231423 — genetics — Posted on 2018-07-17

1149 Chromatin Blueprint Of Glioblastoma Stem Cells Reveals Common Drug Candidates For Distinct Subtypes

Guilhamon, P.; Kushida, M. M.; MacLeod, G.; Tonekaboni, S. A. M.; Cavalli, F. M.; Coutinho, F. J.; Rajakulendran, N.; Che, X.; Rastegar, N.; Meyer, M.; Lan, X.; Nunes, N. M.; Tabori, U.; Taylor, M. D.; Haibe-Kains, B.; Angers, S.; Dirks, P.; Lupien, M.

10.1101/370726 — cancer biology — Posted on 2018-07-17

1150 Ultra-sensitive proteome profiling of FACS-isolated cell populations by data-independent acquisition-MS: Application to human hematopoietic stem and progenitor cells

Amon, S.; Meier-Abt, F.; Gillet, L. C.; Dimitrieva, S.; Theocharides, A. P.; Manz, M. G.; Aebersold, R.

10.1101/371161 — systems biology — Posted on 2018-07-17

1151 Using GPUs to accelerate computational diffusion MRI: From microstructure estimation to tractography and connectomes

Hernandez-Fernandez, M.; Reguly, I.; Jbabdi, S.; Giles, M.; Smith, S.; Sotiropoulos, S. N.

10.1101/371278 — neuroscience — Posted on 2018-07-17

1152 Epigenome-based prediction of gene expression across species

Ebert, P.; Lengauer, T.; Bock, C.

10.1101/371146 — genomics — Posted on 2018-07-17

1153 A simple and effective method to isolate germ nuclei from C. elegans for genomic assays.

Han, M.; Wei, G.; McManus, C. E.; Reinke, V.

10.1101/371351 — genomics — Posted on 2018-07-17

1154 Matched-filter based algorithm for sub- to multi-cellular classification of myocyte tubule-system

Colli, D. F.; Blood, R.; Sankarankutty, A. C.; Sachse, F. B.; Frisk, M.; Louch, W. E.; Kekenes-Huskey, P. M.

10.1101/371328 — biophysics — Posted on 2018-07-17

1155 Panoramic stitching of heterogeneous single-cell transcriptomic data

Hie, B. L.; Bryson, B.; Berger, B.

10.1101/371179 — bioinformatics — Posted on 2018-07-17

1156 Architectural Features of 3D Genome Organization Revealed by Counting CTCF and Cohesin Molecules

Cattoglio, C.; Pustova, I.; Ho, J. J.; Inouye, C. J.; Dailey, G. M.; Darzacq, X.; Tjian, R.; Hansen, A. S.

10.1101/370650 — biophysics — Posted on 2018-07-17

1157 Global Adoption of High-Sensitivity Cardiac Troponins and the Universal Definition of Myocardial Infarction

Anand, A.; Shah, A. S.; Beshiri, A.; Jaffe, A. S.; Mills, N. L.

10.1101/371138 — biochemistry — Posted on 2018-07-17

1158 Enhancer RNAs are necessary and sufficient for activity-dependent neuronal gene transcription

Carullo, N. V. N.; Simon, R. C.; Salisbury, A. J.; Revanna, J. S.; Bunner, K. D.; Savell, K. E.; Sultan, F. A.; Gersbach, C. A.; Day, J. J.

10.1101/270967 — neuroscience — Posted on 2018-07-17

1159 Cellular responses to reactive oxygen species can be predicted on multiple biological scales from molecular mechanisms

Yang, L.; Mih, N.; Anand, A.; Park, J. H.; Tan, J.; Yurkovich, J. T.; Monk, J. M.; Lloyd, C. J.; Sandberg, T. E.; Seo, S. W.; Kim, D.; Sastry, A. V.; Phaneuf, P.; Gao, Y.; Broddrick, J. T.; Chen, K.; Heckmann, D.; Szubin, R.; Hefner, Y.; Feist, A. M.; Palsson, B. O.

10.1101/227892 — systems biology — Posted on 2018-07-17

1160 Lack of dynamic balance between vesicle transport and microtubule growth in neurite outgrowth enables formation of dystrophic bulbs

Yadaw, A. S.; Siddiq, M. M.; Rabinovich, V.; Tolentino, R.; Iyengar, R.; Hansen, J.

10.1101/153569 — systems biology — Posted on 2018-07-17

1161 Long term impact of intensive post graduate laboratory training at the Cold Spring Harbor Neurobiology of Drosophila summer course

Ly, S.; Kaun, K.; Lee, C.-h.; Stewart, D.; Pulver, S. R.; Keene, A. C.

10.1101/369892 — scientific communication and education — Posted on 2018-07-17

1162 Effects of acclimation time and epigenetic mechanisms on growth of Neurospora in fluctuating environments

Kronholm, I.; Ketola, T.

10.1101/234971 — genetics — Posted on 2018-07-17

1163 Control of flagellum length by a grow-and-lock model

Bertiaux, E.; Morga, B.; Blisnick, T.; Rotureau, B.; Bastin, P.

10.1101/266759 — cell biology — Posted on 2018-07-17

1164 The cytoskeleton as a smart composite material: A unified pathway linking microtubules, myosin-II filaments and integrin adhesions

Mohd Rafiq, N.; Nishimura, Y.; Plotnikov, S. V.; Thiagarajan, V.; Zhang, Z.; Natarajan, M.; Shi, S.; Viasnoff, V.; Jones, G. E.; Kanchanawong, P.; Bershadsky, A. D.

10.1101/195495 — cell biology — Posted on 2018-07-17

1165 Single molecule analysis of lamin dynamics

Serebryannyy, L.; Ball, D. A.; Karpova, T. S.; Misteli, T.

10.1101/371104 — cell biology — Posted on 2018-07-17

1166 Reproducible functional connectivity alterations are associated with autism spectrum disorder

Holiga, S.; Hipp, J. F.; Chatham, C. H.; Garces, P.; Spooren, W.; Logier D'Ardhuy, X.; Bertolino, A.; Bouquet, C.; Buitelaar, J. K.; Bours, C.; Rausch, A.; Oldehinkel, M.; Bouvard, M.; Amestoy, A.; Caralp, M.; Gueguen, S.; Ly-Le Moal, M.; Houenou, J.; Beckmann, C. F.; Loth, E.; Murphy, D.; Charman, T.; Tillmann, J.; Laidi, C.; Delorme, R.; Beggiato, A.; Gaman, A.; Scheid, I.; Leboyer, M.; d'Albis, M.-A.; Sevigny, J.; Czech, C.; Bolognani, F.; Honey, G. D.; Dukart, J.

10.1101/303115 — neuroscience — Posted on 2018-07-17

1167 Demographic determinants of biometric heritability

Jones, J.; Plard, F.; Gaillard, J.-M.; Coulson, T.; Tuljapurkar, S.

10.1101/370866 — ecology — Posted on 2018-07-17

1168 Radiosensitivity is an acquired vulnerability of PARPi-resistant BRCA1-deficient tumors

Barazas, M.; Gasparini, A.; Huang, Y.; Kucukosmanoglu, A.; Annunziato, S.; Bouwman, P.; Sol, W.; Kersbergen, A.; Proost, N.; van de Ven, M.; Jonkers, J.; Borst, G.; Rottenberg, S.

10.1101/370577 — cancer biology — Posted on 2018-07-17

1169 Every which way? On predicting tumor evolution using cancer progression models

Diaz-Uriarte, R.; Vasallo Vega, C.

10.1101/371039 — bioinformatics — Posted on 2018-07-17

1170 A nucleus-like compartment shields bacteriophage DNA from CRISPR-Cas and restriction nucleases

Mendoza, S. D.; Berry, J. D.; Nieweglowska, E. S.; Leon, L. M.; Agard, D.; Bondy-Denomy, J.

10.1101/370791 — microbiology — Posted on 2018-07-17

1171 Novel Wolbachia strains in Anopheles malaria vectors from Sub-Saharan Africa

Jeffries, C. L.; Lawrence, G. G.; Golovko, G.; Kristan, M.; Orsborne, J.; Spence, K.; Hurn, E.; Bandibabone, J.; Tantely, L. M.; Raharimalala, F. N.; Keita, K.; Camara, D.; Barry, Y.; Watsenga, F.; Manzambi, E. Z.; Afrane, Y. A.; Mohammed, A. R.; Abeku, T. A.; Hegde, S.; Khanipov, K.; Pimenova, M.; Fofanov, Y.; Boyer, S.; Irish, S. R.; Hughes, G. L.; Walker, T.

10.1101/338434 — microbiology — Posted on 2018-07-17

1172 Epithelial control of colonisation by Streptococcus pneumoniae at the human mucosal surface

Weight, C. M.; Venturini, C.; Pojar, S.; Jochems, S.; Reine, J.; Nikolaou, E.; Solorzano, C.; Noursadeghi, M.; Brown, J. S.; Ferreira, D. M.; Heyderman, R. S.

10.1101/281576 — immunology — Posted on 2018-07-17

1173 PIKfyve/Fab1 is required for efficient V-ATPase and hydrolase delivery to phagosomes, phagosomal killing, and restriction of Legionella infection

Buckley, C. M.; Heath, V. L.; Gueho, A.; Bosmani, C.; Knobloch, P.; Sikakana, P.; Personnic, N.; Dove, S. K.; Michell, R. H.; Meier, R.; Hilbi, H.; Soldati, T.; Insall, R. H.; King, J.

10.1101/343301 — cell biology — Posted on 2018-07-17

1174 Discovery of biased orientation of human DNA motif sequences affecting enhancer-promoter interactions and transcription of genes

Osato, N.

10.1101/290825 — bioinformatics — Posted on 2018-07-17

1175 Analysis of P granules in vivo and ex vivo

Putnam, A.; Cassani, M.; Smith, J.; Seydoux, G.

10.1101/245878 — molecular biology — Posted on 2018-07-17

1176 Conflict of evolutionary interests between plants and pollinators revealed through functional exploration of flower morphospace

Peng, F.; Campos, E. O.; Sullivan, J. G.; Berry, N.; Song, B. B.; Daniel, T. L.; Bradshaw, H. D.

10.1101/370700 — ecology — Posted on 2018-07-17

1177 HiPLA: High-throughput imaging Proximity Ligation Assay

Serebryannyy, L.; Misteli, T.

10.1101/371062 — cell biology — Posted on 2018-07-17

1178 The palmitoyl acyltransferase DHHC5 mediates beta-adrenergic signaling in the heart by targeting Gα proteins and G protein-coupled receptor kinase 2

Chen, J. J.; Marsden, A. N.; Akimzhanov, A. M.; Boehning, D.

10.1101/371211 — cell biology — Posted on 2018-07-17

1179 Costing ‘the’ MTD … in 2-D

Norris, D. C.

10.1101/370817 — pharmacology and toxicology — Posted on 2018-07-17

1180 Pathogen diversity drives the evolution of promiscuous peptide binding of human MHC-II alleles

Manczinger, M.; Boross, G.; Kemeny, L.; Muller, V.; Lenz, T.; Papp, B.; Pal, C.

10.1101/371054 — evolutionary biology — Posted on 2018-07-17

1181 Chronic infections can shape epidemic exposure: Pathogen co-occurrence networks in the Serengeti lions

Fountain-Jones, N. M.; Packer, C.; Jacquot, M.; Blanchet, G.; Terio, K.; Craft, M.

10.1101/370841 — ecology — Posted on 2018-07-17

1182 Chromatin Blueprint Of Glioblastoma Stem Cells Reveals Common Drug Candidates For Distinct Subtypes

Lupien, M.; Guilhamon, P.; Kushida, M. M.; MacLeod, G.; Tonekaboni, S. A. M.; Cavalli, F. M.; Coutinho, F. J.; Rajakulendran, N.; Che, X.; Rastegar, N.; Meyer, M.; Nunes, N. M.; Tabori, U.; Taylor, M. D.; Haibe-Kains, B.; Angers, S.; Dirks, P.; Lan, X.

10.1101/370726 — cancer biology — Posted on 2018-07-17

1183 Loss of vimentin intermediate filaments decreases peri-nuclear stiffness and enhances cell motility through confined spaces

Patteson, A. E.; Pogoda, K.; Byfield, F. J.; Charrier, E. E.; Galie, P. A.; Deptuła, P.; Bucki, R.; Janmey, P. A.

10.1101/371047 — biophysics — Posted on 2018-07-17

1184 A Comprehensive Approach Characterizing Fusion Proteins and Their Interactions Using Biomedical Literature

Tagore, S.; Gorohovski, A.; Jensen, L. J.; Frenkel-Morgenstern, M.

10.1101/371088 — bioinformatics — Posted on 2018-07-17

1185 BodyMap transcriptomes reveal unique circular RNA features across tissue types and developmental stages

Zhou, T.; Xie, X.; Li, M.; Shi, J.; Zhou, J. J.; Knox, K. S.; Wang, T.; Chen, Q.; Gu, W.

10.1101/370718 — bioinformatics — Posted on 2018-07-17

1186 Lipids are the preferred substrate of the protist Naegleria gruberi, relative of a human brain pathogen

Bexkens, M.; Zimorski, V.; Sarink, M. J.; Wienk, H.; Brouwers, J. F.; De Jonckheere, J. F.; Martin, W. F.; Opperdoes, F. R.; van Hellemond, J. J.; Tielens, A. G. M.

10.1101/370890 — biochemistry — Posted on 2018-07-17

1187 Novel cytonuclear combinations modify Arabidopsis seed physiology and vigor

Boussardon, C.; Martin-Magniette, M.-L.; Godin, B.; Benamar, A.; Vittrant, B.; Citerne, S.; Mary-Huard, T.; Macherel, D.; Rajjou, L.; Budar, F.

10.1101/370098 — plant biology — Posted on 2018-07-17

1188 Identification of Transcription Factor Binding Sites using ATAC-seq

Li, Z.; Schulz, M. H.; Zenke, M.; Gesteira Costa Filho, I.

10.1101/362863 — bioinformatics — Posted on 2018-07-17

1189 Information transmission in a constitutively active GABAergic synapse

Lavian, H.; Korngreen, A.

10.1101/370833 — neuroscience — Posted on 2018-07-17

1190 p130Cas contributes to cellular mechanosensing and force exertion.

van Hoorn, H.; Donato, D. M.; Balcioglu, H. E.; Danen, E. H.; Schmidt, T.

10.1101/371021 — biophysics — Posted on 2018-07-17

1191 Linking Retinal, Neural, and Perceptual Measures of Glaucoma with Diffusion Magnetic Resonance Imaging (dMRI)

Miller, N. P.; Liu, Y.; Krivochenitser, R.; Rokers, B.

10.1101/370643 — neuroscience — Posted on 2018-07-17

1192 Sleep selectively stabilizes contextual aspects of negative memories

Cox, R.; Van Bronkhorst, M. L.; Bayda, M.; Gomillion, H.; Cho, E.; Parr, E.; Manickas-Hill, O. P.; Schapiro, A. C.; Stickgold, R.

10.1101/370965 — neuroscience — Posted on 2018-07-17

1193 DoubletDecon: Cell-State Aware Removal of Single-Cell RNA-Seq Doublets

DePasquale, E. A. K.; Schnell, D. J.; Valiente, I.; Blaxall, B. C.; Grimes, H. L.; Singh, H.; Salomonis, N.

10.1101/364810 — bioinformatics — Posted on 2018-07-17

1194 Proteogenomics of adenosine-to-inosine RNA editing in the fruit fly

Kuznetsova, K. G.; Kliuchnikova, A. A.; Ilina, I. Y.; Chernobrovkin, A. L.; Novikova, S. E.; Farafonova, T. E.; Karpov, D. S.; Ivanov, M. V.; Goncharov, A. O.; Voronko, O. E.; Nasaev, S. S.; Ilgisonis, E. V.; Zgoda, V. G.; Zubarev, R. A.; Gorshkov, M. V.; Moshkovskii, S. A.

10.1101/101949 — biochemistry — Posted on 2018-07-17

1195 A feeding aggregation of Omura‘s whale Balaenoptera omurai off Nosy Be, Mozambique Channel

Laboute, P.; Borsa, P.

10.1101/311043 — zoology — Posted on 2018-07-17

1196 Experimental and computational framework for a dynamic protein atlas of human cell division

Cai, Y.; Hossain, M. J.; Heriche, J.-K.; Politi, A. Z.; Walther, N.; Koch, B.; Wachsmuth, M.; Nijmeijer, B.; Kueblbeck, M.; Martinic Kavur, M.; Ladurner, R.; Alexander, S.; Peters, J.-M.; Ellenberg, J.

10.1101/227751 — systems biology — Posted on 2018-07-17

1197 An expectation-maximization-like algorithm enables accurate ecological modeling using longitudinal metagenome sequencing data

Li, C.; Chng, K. R.; Av-Shalom, T. V.; Tucker-Kellogg, L.; Nagarajan, N.

10.1101/288803 — systems biology — Posted on 2018-07-17

1198 fluxweb: a package to easily estimate energy fluxes in food webs

Gauzens, B.; Barnes, A.; Jochum, M.; Hines, J.; Wang, S.; Lefcheck, J. S.; Giling, D.; Rosenbaum, B.; Brose, U.

10.1101/229450 — ecology — Posted on 2018-07-17

1199 Characterization of P. falciparum dipeptidyl aminopeptidase 3 specificity reveals structural factors responsible for differences in amino acid preferences between peptide-based substrates and covalent inhibitors.

de Vries, L. E.; Sanchez, M. I.; Groborz, K.; Kuppens, L.; Poreba, M.; Lehmann, C.; Yuan, F.; Arastu-Kapur, S.; Horn, M.; Mares, M.; Bogyo, M.; Drag, M.; Deu, E.

10.1101/246124 — biochemistry — Posted on 2018-07-17

1200 Estimating energy expenditure from wrist and thigh accelerometry in free-living adults: a doubly labelled water study

White, T.; Westgate, K.; Hollidge, S.; Venables, M.; Olivier, P.; Wareham, N.; Brage, S.

10.1101/370247 — epidemiology — Posted on 2018-07-17

1201 Mutational interactions define novel cancer subgroups

Kuipers, J.; Thurnherr, T.; Moffa, G.; Suter, P.; Behr, J.; Goosen, R.; Christofori, G.; Beerenwinkel, N.

10.1101/187260 — cancer biology — Posted on 2018-07-17

1202 An interdisciplinary study around the reliquary of the late cardinal Jacques de Vitry

Decorte, R.; Polet, C.; Boudin, M.; Tilquin, F.; Matroule, J.-Y.; Dieu, M.; Charles, C.; Carlier, A.; Lebecque, F.; Deparis, O.

10.1101/370908 — genetics — Posted on 2018-07-17

1203 Neuronal overexpression of DYRK1A/minibrain alters motor decline, neurodegeneration and synaptic plasticity in Drosophila

Lowe, S.; Usowicz, M.; Hodge, J. J.

10.1101/370924 — neuroscience — Posted on 2018-07-17

1204 Host adaptation and convergent evolution increases antibiotic resistance without loss of virulence in a major human pathogen

Fajardo-Lubian, A.; Ben Zakour, N. L.; Agyekum, A.; Iredell, J. R.

10.1101/370940 — microbiology — Posted on 2018-07-17

1205 Phosphorylation of the Type VI secretion system sheath controls Francisella virulence

Ziveri, J.; Cchuon, C.; Jamet, A.; Prigent, G.; Tros, F.; Barel, M.; Lays, C.; Henry, T.; Keep, N.; Guerrera, C. I.; Charbit, A.

10.1101/370957 — microbiology — Posted on 2018-07-17

1206 Primacy coding facilitates effective odor discrimination when receptor sensitivities are tuned

Zwicker, D.

10.1101/370916 — neuroscience — Posted on 2018-07-17

1207 The dengue virus non-structural protein 1 (NS1) is secreted from mosquito cells in association with the intracellular cholesterol transporter chaperone caveolin complex

Rosales Ramirez, R.; Ludert, J. E.

10.1101/370932 — microbiology — Posted on 2018-07-17

1208 Penalized matrix decomposition for denoising, compression, and improved demixing of functional imaging data

Buchanan, E. K.; Kinsella, I.; Zhou, D.; Zhu, R.; Zhou, P.; Gerhard, F.; Ferrante, J.; Ma, Y.; Kim, S.; Shaik, M.; Liang, Y.; Lu, R.; Reimer, J.; Fahey, P.; Muhammad, T.; Dempsey, G.; Hillman, E.; Ji, N.; Tolias, A.; Paninski, L.

10.1101/334706 — neuroscience — Posted on 2018-07-16

1209 Distinct Cortical-Thalamic-Striatal Circuits Through the Parafascicular Nucleus

Mandelbaum, G.; Taranda, J.; Haynes, T.; Hochbaum, D.; Huang, K. W.; Hyun, M.; Venkataraju, K. U.; Straub, C.; Wang, W.; Robertson, K.; Osten, P.; Sabatini, B.

10.1101/370734 — neuroscience — Posted on 2018-07-16

1210 Extended regions of suspected mis-assembly in the rat reference genome

Ramdas, S.; Ozel, A. B.; Holl, K.; Mandell, M.; Solberg Woods, L.; Li, J. Z.

10.1101/332932 — genomics — Posted on 2018-07-16

1211 Theta bursts precede, and spindles follow, cortical and thalamic downstates in human NREM sleep

Gonzalez, C. E.; Mak-McCully, R.; Rosen, B. Q.; Cash, S.; Chauvel, P.; Bastuji, H.; Rey, M.; Halgren, E.

10.1101/260786 — neuroscience — Posted on 2018-07-16

1212 The Genetic Basis for the Cooperative Bioactivation of Plant Lignans by a Human Gut Bacterial Consortium

Bess, E. N.; Bisanz, J. E.; Spanogiannopoulos, P.; Ang, Q. Y.; Bustion, A.; Kitamura, S.; Alba, D. L.; Wolan, D. W.; Koliwad, S. K.; Turnbaugh, P. J.

10.1101/357640 — microbiology — Posted on 2018-07-16

1213 Toxoplasma does not secrete the GRA16 and GRA24 effectors beyond the parasitophorous vacuole membrane of tissue cysts

Krishnamurthy, S.; Saeij, J.

10.1101/370502 — microbiology — Posted on 2018-07-16

1214 Cell-type specific D1 dopamine receptor modulation of projection neurons and interneurons in the prefrontal cortex

Anastasiades, P.; Boada, C.; Carter, A.

10.1101/370536 — neuroscience — Posted on 2018-07-16

1215 How do your genetics compare to the world’s elite marathoners?

Sims, G. E.; Zheng, X.-P.; Falk, J.; Nova, M.

10.1101/369066 — genetics — Posted on 2018-07-16

1216 Forecasting autism gene discovery with machine learning and genome-scale data

Brueggeman, L.; Koomar, T.; Michaelson, J.

10.1101/370601 — bioinformatics — Posted on 2018-07-16

1217 Zika Virus Infection At Different Pregnancy Stages: Anatomopathological Findings, Target Cells And Viral Persistence In Placental Tissues

Noronha, L.; Zanluca, C.; Burger, M.; Suzukawa, A. A.; Azevedo, M.; Rebutini, P.; Novadzki, I. M.; Tanabe, L. S.; Presibella, M. M.; Duarte dos Santos, C. N.

10.1101/370528 — pathology — Posted on 2018-07-16

1218 Gfi1-expressing Paneth cells revert to stem cells following intestinal injury

Chen, M.-S.; Lo, Y.-H.; Butkus, J.; Zou, W.; Tseng, Y.-J.; Jen, H.-I.; Patel, S.; Groves, A.; Estes, M.; Sahin, E.; Frey, M.; Dempsey, P.; Shroyer, N.

10.1101/364133 — cell biology — Posted on 2018-07-16

1219 Growth Factor Independent 1 is a tumor suppressor gene in colorectal cancer

Chen, M.-S.; Lo, Y.-H.; Chen, X.; Williams, C.; Donnelly, J.; Criss, Z.; Patel, S.; Butkus, J.; Shroyer, N.

10.1101/370585 — cancer biology — Posted on 2018-07-16

1220 BAR scaffolds drive membrane fission by crowding disordered domains

Snead, W. T.; Zeno, W. F.; Kago, G.; Perkins, R. W.; Richter, J. B.; Zhao, C.; Lafer, E. M.; Stachowiak, J. C.

10.1101/276147 — biophysics — Posted on 2018-07-16

1221 Long term impact of intensive post graduate laboratory training at the Cold Spring Harbor Neurobiology of Drosophila summer course

Ly, S.; Kaun, K.; Li, C.-h.; Stewart, D.; Pulver, S. R.; Keene, A. C.

10.1101/369892 — scientific communication and education — Posted on 2018-07-16

1222 The contribution of mitochondrial metagenomics to largescale data mining and phylogenetic analysis of Coleoptera

Linard, B.; Crampton-Platt, A.; Moriniere, J.; Timmermans, M. J.; Andujar, C.; Arribas, P.; Miller, K. E.; Lipecki, J.; Favreau, E.; Hunter, A.; Gomez-Rodriguez, C.; Barton, C.; Nie, R.; Gillett, C. P.; Breeschoten, T.; Bocak, L.; Vogler, A. P.

10.1101/280792 — evolutionary biology — Posted on 2018-07-16

Nagy, O.; Nuez, I.; Savisaar, R.; Peluffo, A. E.; Yassin, A.; Lang, M.; Stern, D. L.; Matute, D.; David, J. R.; Courtier-Orgogozo, V.

10.1101/313197 — evolutionary biology — Posted on 2018-07-16

1224 Long-read sequencing technology indicates genome-wide effects of non-B DNA on polymerization speed and error rate

Guiblet, W. M. F.; Cremona, M. A.; Cechova, M.; Harris, R. S.; Kejnovska, I.; Kejnovsky, E.; Eckert, K.; Chiaromonte, F.; Makova, K. D.

10.1101/237461 — genomics — Posted on 2018-07-16

1225 For comparing phylogenetic diversity among communities, go ahead and use synthesis phylogenies

Li, D.; Trotta, L.; Marx, H. E.; Allen, J. M.; Sun, M.; Soltis, D. E.; Soltis, P. S.; Guralnick, R. P.; Baiser, B. H.

10.1101/370353 — ecology — Posted on 2018-07-16

1226 Drosophila ovarian germline stem cell cytocensor projections dynamically receive and attenuate BMP signalling

Wilcockson, S. G.; Ashe, H. L.

10.1101/370486 — developmental biology — Posted on 2018-07-16

1227 Yield performance of chromosomally engineered durum wheat-Thinopyrum ponticum recombinant lines in a range of contrasting rain-fed environments across three countries

Kuzmanovic, L.; Ruggeri, R.; Able, J. A.; Bassi, F. M.; Maccaferri, M.; Tuberosa, R.; De Vita, P.; Rossini, F.; Ceoloni, C.

10.1101/313825 — genetics — Posted on 2018-07-16

1228 Endogenous amdoparvovirus-related elements reveal insights into the biology and evolution of vertebrate parvoviruses.

Penzes, J.; Marsile-Medun, S.; Agbandje-Mckenna, M.; Gifford, R. J.

10.1101/224584 — evolutionary biology — Posted on 2018-07-16

1229 Creative Minds Are Out of Control: Mid Frontal Theta and Creative Thinking

Wokke, M. E.; Ridderinkhof, K. R.; Padding, L.

10.1101/370494 — animal behavior and cognition — Posted on 2018-07-16

1230 Common object representations for visual production and recognition

Fan, J. E.; Yamins, D. L. K.; Turk-Browne, N. B.

10.1101/097840 — neuroscience — Posted on 2018-07-16

1231 A large-scale genome-wide enrichment analysis identifies new trait-associated genes, pathways and tissues across 31 human phenotypes

Zhu, X.; Stephens, M.

10.1101/160770 — genomics — Posted on 2018-07-16

1232 Tensional homeostasis in multicellular clusters: effects of geometry and traction force dynamics

Stamenovic, D.; Li, J.; Barbone, P. E.; Smith, M. L.

10.1101/370437 — biophysics — Posted on 2018-07-16

1233 MSTD: an efficient method for detecting multi-scale topological domains from symmetric and asymmetric 3D genomic maps

Ye, Y.; Gao, L.; Zhang, S.

10.1101/370338 — bioinformatics — Posted on 2018-07-16

1234 Cis-topic modelling of single cell epigenomes

Bravo Gonzalez-Blas, C.; Minnoye, L.; Papasokrati, D.; Aibar, S.; Hulselmans, G.; Christiaens, V.; Davie, K.; Wouters, J.; Aerts, S.

10.1101/370346 — bioinformatics — Posted on 2018-07-16

1235 MSPminer: abundance-based reconstitution of microbial pan-genomes from shotgun metagenomic data

Plaza Onate, F.; Le Chatelier, E.; Almeida, M.; Cervino, A. C. L.; Gauthier, F.; Magoules, F.; Ehrlich, S. D.; Pichaud, M.

10.1101/173203 — bioinformatics — Posted on 2018-07-16

1236 PANOPLY: Omics-guided drug prioritization method tailored to an individual patient

Kalari, K. R.; Sinnwell, J. P.; Thompson, K. J.; Tang, X.; Carlson, E. E.; Yu, J.; Vedell, P. T.; Ingle, J. N.; Weinshilboum, R.; Wang, L.; Boughey, J. C.; Goetz, M. P.; Suman, V. J.

10.1101/176396 — bioinformatics — Posted on 2018-07-16

1237 Functional phenomics: An emerging field integrating high-throughput phenotyping, physiology, and bioinformatics

York, L. M.

10.1101/370288 — plant biology — Posted on 2018-07-16

1238 Toxoplasma does not secrete the GRA16 and GRA24 effectors beyond the parasitophorous vacuole membrane of tissue cysts

Krishnamurthy, S.; Saeij, J.

10.1101/370502 — microbiology — Posted on 2018-07-16

1239 A novel virulence phenotype rapidly assesses Candida fungal pathogenesis in healthy and immunocompromised Caenorhabditis elegans hosts

Feistel, D. J.; Elmostafa, R.; Nguyen, N.; Penley, M.; Morran, L.; Hickman, M. A.

10.1101/370403 — microbiology — Posted on 2018-07-16

1240 Genome-wide analysis in UK Biobank identifies over 100 QTLs associated with muscle mass variability in middle age individuals

Hernandez Cordero, A. I.; Gregory, J. S.; Douglas, A.; Lionikas, A.

10.1101/370312 — genetics — Posted on 2018-07-16

1241 Patterns of speciation and parallel genetic evolution under adaptation from standing variation

Thompson, K. A.; Osmond, M. M.; Schluter, D.

10.1101/368324 — evolutionary biology — Posted on 2018-07-16

1242 Study of Sterilization Effects on Marine Vibrio sp. using Interaction of Cavitation with Shock Wave in a Narrow Water Chamber

Wang, J.; Wang, Y.; Abe, A.; Sun, M.; Koita, T.; Huang, C.

10.1101/370445 — biophysics — Posted on 2018-07-16

1243 Modifying Reaction Diffusion: A Numerical Model for Turing Morphogenesis, Ben Jacob Patterns, and Cancer Growth

Trepka, K.

10.1101/370304 — biophysics — Posted on 2018-07-16

1244 The phospholamban pentamer interacts with the sarcoplasmic reticulum calcium pump SERCA.

Young, H. S.; Glaves, J. P.; Primeau, J.; Lemieux, J.; Espinoza-Fonseca, L. M.

10.1101/370387 — biophysics — Posted on 2018-07-16

1245 Thermal Denaturation of DNA G-Quadruplexes and their Complexes with Ligands: Thermodynamic Analysis of the Multiple States Revealed by Native Mass Spectrometry

Marchand, A.; Rosu, F.; Zenobi, R.; Gabelica, V.

10.1101/370254 — biophysics — Posted on 2018-07-16

1246 Proteogenomics of adenosine-to-inosine RNA editing in the fruit fly

10.1101/101949 — biochemistry — Posted on 2018-07-16

1247 Mild drought induces phenotypic and DNA methylation plasticity but no transgenerational effects in Arabidopsis

Van Dooren, T.; Silveira, A.; Gilbaut, E.; Jimenez-Gomez, J. M.; Martin, A.; Bach, L.; Tisne, S.; Quadrana, L.; Loudet, O.; Colot, V.

10.1101/370320 — plant biology — Posted on 2018-07-16

1248 Parameterized expertise: Evidence for gradations of musical expertise from electroencephalographic monitoring of auditory decision-making

Sherwin, J.; Sajda, P.

10.1101/370379 — neuroscience — Posted on 2018-07-16

1249 Massively parallel characterization of regulatory dynamics during neural induction

Inoue, F.; Kreimer, A.; Ashuach, T.; Ahituv, N.; Yosef, N.

10.1101/370452 — genomics — Posted on 2018-07-16

1250 A robust phylogenomic timetree for biotechnologically and medically important fungi from Aspergillaceae (Eurotiomycetes, Ascomycota)

Steenwyk, J. L.; Shen, X.-X.; Lind, A. L.; Goldman, G. G.; Rokas, A.

10.1101/370429 — evolutionary biology — Posted on 2018-07-16

1251 Receptor-ligand rebinding kinetics in confinement

Erbas, A.; Olvera de la Cruz, M.; Marko, J.

10.1101/370395 — biophysics — Posted on 2018-07-16

1252 Porcine circovirus 2 particles use distinct binding modes for cellular attachment

Dhindwal, S.; Avila, B.; Khayat, R.

10.1101/370411 — biophysics — Posted on 2018-07-16

1253 Early life stress impairs postnatal oligodendrogenesis and adult behavior through activity-dependent mechanisms

TEISSIER, A.; Le Magueresse, C.; Andrade-da-Costa, B. L. d. S.; Olusakin, J.; de Stasi, A.; Bacci, A.; Kawasawa, I.; Vaidya, V.; Gaspar, P.

10.1101/369660 — animal behavior and cognition — Posted on 2018-07-16

1254 Illuminating spatial A-to-I RNA editing signatures within the Drosophila brain

Sapiro, A. L.; Shmueli, A.; Henry, G. L.; Li, Q.; Shalit, T.; Yaron, O.; Paas, Y.; Li, J. B.; Shohat-Ophir, G.

10.1101/370296 — neuroscience — Posted on 2018-07-16

1255 Nuclear polymorphism and non-proliferative adult neurogenesis in human neural crest-derived cells.

Bueno, C.; Martinez-Morga, M.; Martinez, S.

10.1101/325613 — neuroscience — Posted on 2018-07-16

1256 ProfPPIdb: pairs of physical protein-protein interactions predicted for entire proteomes

Tran, L.; Hamp, T.; Rost, B.

10.1101/332510 — bioinformatics — Posted on 2018-07-16

1257 Effect of temporal and spatial asymmetries to the neuromuscular control of the lower limbs during stationary cycling

Zych, M.; Rankin, I.; Holland, D.; Severini, G.

10.1101/370262 — neuroscience — Posted on 2018-07-16

1258 Sonic stimulation, and low power microwave radiation can modulate bacterial virulence towards Caenorhabditis elegans

Patel, P.; Patel, H.; Vekariya, D.; Joshi, C.; Patel, P.; Muskal, S.; Kothari, V.

10.1101/351924 — microbiology — Posted on 2018-07-16

1259 The ecology of the Chloroflexi in full-scale activated sludge wastewater treatment plants

Nierychlo, M.; Miłobedzka, A.; Petriglieri, F.; McIlroy, B.; Nielsen, P. H.; McIlroy, S. J.

10.1101/335752 — microbiology — Posted on 2018-07-16

1260 Species-level bacterial community profiling of the healthy sinonasal microbiome using Pacific Biosciences sequencing of full-length 16S rRNA genes

Earl, J. P.; Adappa, N. D.; Krol, J.; Bhat, A. S.; Balashov, S.; Ehrlich, R. L.; Palmer, J. N.; Workman, A. D.; Blasetti, M.; Hammond, J.; Cohen, N. A.; Ehrlich, G. D.; Mell, J. C.

10.1101/338731 — bioinformatics — Posted on 2018-07-16

1261 Thy1 (CD90) expression is regulated by DNA methylation during adipogenesis

Flores, E. M.; Woeller, C. F.; Falsetta, M. L.; Susiarjo, M.; Phipps, R. P.

10.1101/365809 — molecular biology — Posted on 2018-07-16

1262 YAP/TAZ-TEAD Activity Links Mechanical Cues To Specific Cell Fate Within The Hindbrain Boundaries

Voltes, A.; Hevia, C. F.; Dingare, C.; Calzolari, S.; Terriente, J.; Norden, C.; Lecaudey, V.; Pujades, C.

10.1101/366351 — developmental biology — Posted on 2018-07-16

1263 Structure probing data enhances RNA-RNA interaction prediction

Miladi, M.; Montaseri, S.; Backofen, R.; Raden, M.

10.1101/359323 — bioinformatics — Posted on 2018-07-16

1264 Causal relationships between blood lipids and depression phenotypes: A Mendelian randomization analysis

So, H.-C.; Cheng, Y.-y.; Chau, C. K.-l.

10.1101/363119 — genetics — Posted on 2018-07-16

1265 Diversity of acquired adaptation to fluconazole is influenced by genetic background and ancestral fitness in Candida albicans

Gerstein, A. C.; Berman, J.

10.1101/360347 — evolutionary biology — Posted on 2018-07-16

1266 Soft Substrate Maintains Proliferative and Multi-lineage Potential of Human Mesenchymal Stem Cells on Long Term Expansion

Kureel, S. K.; Mogha, P.; Khadpekar, A.; Kumar, V.; Joshi, R.; Das, S.; Bellare, J.; Majumder, A.

10.1101/364059 — bioengineering — Posted on 2018-07-16

1267 Synchronised brood transport by ants occurs without communication

Mersch, D. P.; Eckmann, J.-P.; Crespi, A.; Keller, L.

10.1101/364273 — animal behavior and cognition — Posted on 2018-07-16

1268 Kinetic analysis of yeast-yeast interactions in oenological conditions

Harle, O.; Legrand, J.; Tesniere, C.; Pradal, M.; Mouret, J.-R.; Nidelet, T.

10.1101/363531 — microbiology — Posted on 2018-07-16

1269 Comprehensive analysis of immune evasion in breast cancer by single-cell RNA-seq

Yin, J.; Li, Z.; Yan, C.; Fang, E.; Wang, T.; Zhou, H.; Luo, W.; Zhou, Q.; Zhang, J.; Hu, J.; Jin, H.; Wang, L.; Zhao, X.; Li, J.; Qi, X.; Zhou, W.; Huang, C.; He, C.; Yang, H.; Kristiansen, K.; Hou, Y.; Zhu, S.; Zhou, D.; Wang, L.; Dean, M.; Wu, K.; Hu, H.; Li, G.

10.1101/368605 — cancer biology — Posted on 2018-07-16

1270 Base-pairing requirements for small RNA mediated gene silencing of recessive self incompatibility alleles in Arabidopsis halleri.

Burghgraeve, N.; Simon, S.; Barral, S.; Fobis-Loisy, I.; Holl, A.-C.; Ponitzki, C.; Schmitt, E.; Vekemans, X.; Castric, V.

10.1101/370239 — genetics — Posted on 2018-07-16

1271 MuSCA: a multi-scale model to explore carbon allocation in plants

Reyes, F.; Pallas, B.; Pradal, C.; Vaggi, F.; Zanotelli, D.; Tagliavini, M.; Gianelle, D.; Costes, E.

10.1101/370189 — plant biology — Posted on 2018-07-16

1272 Speed breeding in growth chambers and glasshouses for crop breeding and model plant research

Ghosh, S.; Watson, A.; Gonzalez-Navarro, O. E.; Ramirez-Gonzalez, R. H.; Yanes, L.; Mendoza-Suarez, M.; Simmonds, J.; Wells, R.; Rayner, T.; Green, P.; Hafeez, A.; Hayta, S.; Melton, R. E.; Steed, A.; Sarkar, A.; Carter, J.; Perkins, L.; Lord, J.; Tester, M.; Osbourn, A.; Moscou, M. J.; Nicholson, P.; Harwood, W.; Martin, C.; Domoney, C.; Uauy, C.; Hazard, B.; Wulff, B. B. H.; Hickey, L. T.

10.1101/369512 — plant biology — Posted on 2018-07-16

1273 Plasma metabolomics and incidence of atrial fibrillation: the Atherosclerosis Risk in Communities (ARIC) Study

Alonso, A.; Yu, B.; Sun, Y. V.; Chen, L. Y.; Loehr, L. R.; O'Neal, W. T.; Soliman, E. Z.; Boerwinkle, E.

10.1101/368118 — epidemiology — Posted on 2018-07-16

1274 A broad-host-range event detector: expanding and quantifying performance across bacterial species

Khan, N.; Yeung, E.; Farris, Y.; Fansler, S. J.; Bernstein, H. C.

10.1101/369967 — synthetic biology — Posted on 2018-07-16

1275 Seeing versus Knowing: The Temporal Dynamics of Real and Implied Colour Processing in the Human Brain

Teichmann, L.; Grootswagers, T.; Carlson, T.; Rich, A.

10.1101/369926 — neuroscience — Posted on 2018-07-16

1276 Dynamic plant height QTL revealed in maize through remote sensing phenotyping using a high-throughput unmanned aerial vehicle (UAV)

Wang, X.; Zhang, R.; Han, L.; Song, W.; Liu, X.; Sun, X.; Luo, M.; Chen, K.; Zhang, Y.; Yang, G.; Zhao, Y.; Zhao, J.

10.1101/369884 — genetics — Posted on 2018-07-16

1277 Mining functional annotations across species

Warris, S.; Dijkxhoorn, S.; van Sloten, T.; van de Vossenberg, B. T. L. H.

10.1101/369785 — bioinformatics — Posted on 2018-07-16

1278 Combinatorial Detection of Conserved Alteration Patterns for Identifying Cancer Subnetworks

Hodzic, E.; Shrestha, R.; Zhu, K.; Cheng, K.; Collins, C. C.; Sahinalp, S. C.

10.1101/369850 — systems biology — Posted on 2018-07-16

1279 Endogenous controllability of closed-loop brain-machine interfaces for pain.

Zhang, S.; Yoshida, W.; Mano, H.; Yanagisawa, T.; Shibata, K.; Kawato, M.; Seymour, B.

10.1101/369736 — neuroscience — Posted on 2018-07-16

1280 Local Attachment Explains Small-World-Like Properties of Fibroblastic Reticular Cell Networks in Lymph Nodes

Soekarjo, K. M. W.; Textor, J.; De Boer, R. J.

10.1101/369801 — immunology — Posted on 2018-07-16

1281 The landscape of S100B+ and HLA-DR+ dendritic cell subsets in tonsils at the single cell level via high-parameter mapping

Bolognesi, M. M.; Bosisio, F. M.; Manzoni, M.; Schapiro, D.; Tagliabue, R.; Faretta, M.; Parravicini, C.; Haberman, A. M.; Cattoretti, G.

10.1101/369983 — immunology — Posted on 2018-07-16

1282 A Computational Model of Bidirectional Axonal Growth in Micro-Tissue Engineered Neuronal Networks (micro-TENNs)

Marinov, T.; Yuchi, L.; Adewole, D. O.; Cullen, D. K.; Kraft, R. H.

10.1101/369843 — bioengineering — Posted on 2018-07-16

1283 How molecular mechanisms of resistance affect resistance evolution

Clarelli, F.; Singh, B.; Palmer, A.; Abel, S.; Cohen, T.; Abel zur Wiesch, P.

10.1101/369975 — biochemistry — Posted on 2018-07-16

1284 Dynamic modelling suggests differential mechanisms for initiation of non-selective autophagy and mitophagy

Dalle Pezze, P.; Karanasios, E.; Kandia, V.; Walker, S.; Ktistakis, N.; Le Novere, N.

10.1101/370114 — systems biology — Posted on 2018-07-16

1285 Datamining a medieval medical text reveals patterns in ingredient choice that reflect biological activity against the causative agents of specified infections

Connelly, E.; del Genio, C. I.; Harrison, F.

10.1101/368779 — scientific communication and education — Posted on 2018-07-16

1286 Moderate developmental alcohol exposure reduces repetitive alternation in a zebrafish model of fetal alcohol spectrum disorders.

Cleal, M.; Parker, M. O.

10.1101/370072 — pharmacology and toxicology — Posted on 2018-07-16

1287 The trichotomy of pneumococcal infection outcomes

Almocera, A. E. S.; Hernandez-Mejia, G.; Parra-Rojas, C.; Hernandez-Vargas, E. A.

10.1101/370007 — microbiology — Posted on 2018-07-16

1288 Engrafted parenchymal brain macrophages differ from host microglia in transcriptome, epigenome and responsiveness to challenge

Shemer, A.; Grozovski, J.; Leng Tay, T.; Tao, J.; Volaski, A.; Suess, P.; Ardura-Fabregat, A.; Gross, M.; Kim, J.-S.; David, E.; Chappell-Maor, L.; Thielecke, L.; Glass, C. K.; Cornils, K.; Prinz, M.; Jung, S.

10.1101/369942 — immunology — Posted on 2018-07-16

1289 High-resolution mapping of cancer cell networks using co-functional interactions

Boyle, E. A.; Pritchard, J. K.; Greenleaf, W. J.

10.1101/369751 — genomics — Posted on 2018-07-16

1290 Parallel Evolution and the Emergence of Highly Pathogenic Avian Influenza A Viruses

Escalera-Zamudio, M.; Gutierrez, B.; Theze, J.; Russell Keown, J.; Carrique, L.; Bowden, T. A.; Pybus, O. G.

10.1101/370015 — evolutionary biology — Posted on 2018-07-16

1291 Predicting the Outcomes of New Short-Course Regimens for Multi-Drug Resistant Tuberculosis Using Intrahost and Pharmacokinetic-Pharmacodynamic Modelling

Doan, T.; Cao, P.; Emeto, T. I.; McCaw, J. M.; McBryde, E. S.

10.1101/369991 — systems biology — Posted on 2018-07-16

1292 Novel cytonuclear combinations modify Arabidopsis seed physiology and vigor

Boussardon, C.; Martin-Magniette, M.-L.; Godin, B.; Benamar, A.; Vittrant, B.; Citerne, S.; Mary-Huard, T.; Macherel, D.; Rajjou, L.; Budar, F.

10.1101/370098 — plant biology — Posted on 2018-07-16

1293 Anticlastogenic Effect of Ulva Fasciata, Against Cyclophosphamide and Mitomycin C Induced Chromosomal Damage in Swiss Albino Mice

Dolpady, J.; KK, V.

10.1101/370031 — pharmacology and toxicology — Posted on 2018-07-16

1294 Comparing fMRI inter-subject correlations between groups

Tohka, J.; Pollick, F. E.; Pajula, J.; Kauppi, J.-P.

10.1101/370023 — neuroscience — Posted on 2018-07-16

1295 The integration of visual and target signals in V4 and IT during visual object search

Roth, N. C.; Rust, N.

10.1101/370049 — neuroscience — Posted on 2018-07-16

1296 Non-parametric polygenic risk prediction using partitioned GWAS summary statistics

Chun, S.; Imakaev, M.; Stitziel, N. O.; Sunyaev, S. R.

10.1101/370064 — bioinformatics — Posted on 2018-07-16

1297 Probabilistic graphical models and computational metabolic models applied to the analysis of metabolomics data in breast cancer

Trilla-Fuertes, L.; Gamez-Pozo, A.; M Arevalillo, J.; Prado-Vazquez, G.; Zapater-Moros, A.; Diaz-Almiron, M.; Navarro, H.; Main, P.; Espinosa, E.; Zamora, P.; Fresno Vara, J. A.

10.1101/370221 — systems biology — Posted on 2018-07-16

1298 Influence of Shea Tree (Vitellaria Paradoxa) on Maize and Soybean Production

Alele, P. O.

10.1101/370155 — plant biology — Posted on 2018-07-16

1299 Comparative structural dynamic analysis of GTPases

Li, H.; Yao, X.-Q.; Grant, B. J.

10.1101/370197 — bioinformatics — Posted on 2018-07-16

1300 The finite state projection based Fisher information matrix approach to estimate and maximize the information in single-cell experiments

Fox, Z. R.; Munsky, B.

10.1101/370205 — systems biology — Posted on 2018-07-16

1301 Accelerated detection of Gram negative bacteria in blood culture by enhanced acoustic flow cytometry (AFC) following peptide nucleic acid fluorescence in situ hybridization (PNA-FISH)

Huang, X. X.; Urosevic, N.; Inglis, T. J.

10.1101/370171 — microbiology — Posted on 2018-07-16

1302 Morphofunctional analysis of antigen uptake mechanisms following sublingual immunotherapy with beads in mice

Elewa, Y.; Mizoguchi, T.; Ichii, O.; Nakamura, T.; Kon, Y.

10.1101/370163 — immunology — Posted on 2018-07-16

1303 Characterisation of morphological differences in well-differentiated nasal epithelial cell cultures from preterm and term infants at birth and one-year.

Groves, H.; Guo-Parke, H.; Broadbent, L.; Shields, M.; Power, U.

10.1101/370148 — immunology — Posted on 2018-07-16

1304 The regulatory control of Cebpa enhancers and silencers in the myeloid and red-blood cell lineages

Repele, A.; Krueger, S.; Tuineau, M. Y.; Manu, M.

10.1101/369553 — developmental biology — Posted on 2018-07-16

1305 Simultaneous production of diverse neuronal subtypes during early corticogenesis

Magrinelli, E.; Wagener, R. J.; Jabaudon, D.

10.1101/369678 — developmental biology — Posted on 2018-07-16

1306 Model testing for distinctive functional connectivity gradients with resting-state fMRI data

O'Rawe, J. F.; Ide, J. S.; Leung, H.-C.

10.1101/298752 — neuroscience — Posted on 2018-07-15

1307 Neurotransmitter imbalance in the brain and Alzheimer’s pathology

Snowden, S. G.; Ebshiana, A.; Hye, A.; Yang, A.; Pletnikova, O.; O'Brien, R.; Troncoso, J.; Legido-Quigley, C.; Thambisetty, M.

10.1101/220699 — neuroscience — Posted on 2018-07-15

1308 Creating Standards for Evaluating Tumour Subclonal Reconstruction

Salcedo, A.; Tarabichi, M.; Espiritu, S. M. G.; Deshwar, A. G.; David, M.; Wilson, N. M.; Dentro, S.; Wintersinger, J. A.; Liu, L. Y.; Ko, M.; Sivanandan, S.; Zhang, H.; Zhu, K.; Ou Yang, T.-H.; Chilton, J. M.; Buchanan, A.; Lalansingh, C. M.; P'ng, C.; Anghel, C. V.; Umar, I.; Lo, B.; DREAM SMC-Het Participants, ; Simpson, J. T.; Stuart, J. M.; Anastassiou, D.; Guan, Y.; Ewing, A.; Ellrott, K.; Wedge, D. C.; Morris, Q. D.; Van Loo, P.; Boutros, P. C.

10.1101/310425 — bioinformatics — Posted on 2018-07-15

1309 A cell cycle-coordinated nuclear compartment for Polymerase II transcription encompasses the earliest gene expression before global genome activation

Hadzhiev, Y.; Qureshi, H.; Wheatley, L.; Cooper, L.; Jasiulewicz, A.; Van Nguyen, H.; Wragg, J.; Poovathumkadavil, D.; Conic, S.; Bajan, S.; Sik, A.; Hutvagner, G.; Tora, L.; Gambus, A.; Fossey, J. S.; Mueller, F.

10.1101/366468 — developmental biology — Posted on 2018-07-15

1310 Segregational drift and the interplay between plasmid copy number and evolvability

Ilhan, J.; Kupczok, A.; Woehle, C.; Wein, T.; Huelter, N. F.; Rosenstiel, P.; Landan, G.; Mizrahi, I.; Dagan, T.

10.1101/369579 — microbiology — Posted on 2018-07-15

1311 SLIC-CAGE: high-resolution transcription start site mapping using nanogram-levels of total RNA

Cvetesic, N.; Leitch, H. G.; Borkowska, M.; Müller, F.; Carninci, P.; Hajkova, P.; Lenhard, B.

10.1101/368795 — genomics — Posted on 2018-07-15

1312 Reply to Cross-Contamination Explains \"Inter and Intraspecific Horizontal Genetic Transfers\" between Asexual Bdelloid Rotifers (Wilson, Nowell & Barraclough 2018)

Flot, J.-F.; Debortoli, N.; Hallet, B.; Narayan, J.; Van Doninck, K.

10.1101/368209 — evolutionary biology — Posted on 2018-07-15

1313 Black swimming dots in cell culture: the identity, detection method and judging criteria

Tang, S.; Yang, X.; Jiang, X.; An, W.; Li, X.; Wang, S.; Li, H.; Wu, Z.; Su, F.; Ma, S.

10.1101/366906 — cell biology — Posted on 2018-07-15

1314 Next Generation-Targeted Amplicon Sequencing (NG-TAS): An optimised protocol and computational pipeline for cost-effective profiling of circulating tumour DNA

Gao, M.; Callari, M.; Beddowes, E.; Sammut, S.-J.; Grzelak, M.; Biggs, H.; Jones, L.; Boumertit, A.; Linn, S. C.; Cortes, J.; Baird, R.; Chin, S.-F.; Caldas, C.

10.1101/366534 — genomics — Posted on 2018-07-15

1315 The Evolution of SlyA/RovA Transcription Factors From Repressors to Counter-Silencers in Enterobacteriaceae

Will, W. R.; Brzovic, P.; Le Trong, I.; Stenkamp, R. E.; Lawrenz, M. B.; Navarre, W. W.; Main-Hester, K.; Miller, V. L.; Libby, S. J.; Fang, F. C.

10.1101/369546 — microbiology — Posted on 2018-07-15

1316 scPred: Single cell prediction using singular value decomposition and machine learning classification

Alquicira-Hernandez, J.; Nguyen, Q.; Powell, J. E.

10.1101/369538 — genomics — Posted on 2018-07-15

1317 Connectivity and network state-dependent recruitment of long-range VIP-GABAergic neurons in the mouse hippocampus

Francavilla, R.; Villette, V.; Luo, X.; Chamberland, S.; Munoz-Pino, E.; Camire, O.; Wagner, K.; Kis, V.; Somogyi, P.; Topolnik, L.

10.1101/364547 — neuroscience — Posted on 2018-07-15

1318 Facile real time detection of membrane colocalization of RAS superfamily GTPase proteins in living cells

Li, Y.-C.; Wang, L.; Hayes, T. K.; Sutton, M. N.; Bast, R. C.; McCormick, F.; Der, C. J.; Wahl, G. M.

10.1101/369587 — cancer biology — Posted on 2018-07-15

1319 Context-specific regulation of monocyte surface IL7R expression and soluble receptor secretion by a common autoimmune risk allele

Al-Mossawi, H.; Yager, N.; Taylor, C.; Lau, E.; Danielli, S.; de Wit, J.; Makino, S.; Gilchrist, J.; Lee, W.; Nassiri, I.; Mahe, E. A.; Rizvi, L.; Cheeseman, J.; Neville, M.; Knight, J. C.; Bowness, P.; Fairfax, B. P.

10.1101/262410 — immunology — Posted on 2018-07-15

1320 Nucleotide sequence and DNaseI sensitivity are predictive of 3D chromatin architecture

Schreiber, J.; Libbrecht, M.; Bilmes, J.; Noble, W.

10.1101/103614 — bioinformatics — Posted on 2018-07-15

1321 The Enzymes that beyond Non-Oxidative Glycolysis

Xu, Z.; Wu, Q.; Zhu, D.

10.1101/362269 — synthetic biology — Posted on 2018-07-15

1322 The role of the gustatory cortex in incidental experience-evoked enhancement of later taste learning

Flores, V. L.; Parmet, T.; Mukherjee, N.; Nelson, S. B.; Katz, D. B.; Levitan, D.

10.1101/369520 — neuroscience — Posted on 2018-07-14

1323 CBD-1 scaffolds two independent complexes required for eggshell vitelline layer formation and egg activation in C. elegans

Gonzalez, D. P.; Lamb, H. V.; Partida, D.; Wilson, Z. T.; Harrison, M.-C.; Prieto, J. A.; Moresco, J. J.; Diedrich, J. K.; Yates, J. R.; Olson, S. K.

10.1101/369504 — developmental biology — Posted on 2018-07-14

1324 Genetic and environmental perturbations lead to regulatory decoherence

Lea, A.; Subramaniam, M.; Ko, A.; Lehtimäki, T.; Raitoharju, E.; Kähönen, M.; Seppälä, I.; Mononen, N.; Raitakari, O.; Ala-Korpela, M.; Pajukanta, P.; Zaitlen, N.; Ayroles, J.

10.1101/369306 — genomics — Posted on 2018-07-14

1325 Backward evolution from gene network dynamics

Belete, M. K.; Charlebois, D. A.; Balazsi, G.

10.1101/369371 — evolutionary biology — Posted on 2018-07-14

1326 Population assignment from cancer genome profiling data

Huang, Q.; Baudis, M.

10.1101/368647 — bioinformatics — Posted on 2018-07-14

1327 The impact of cigarette smoke exposure, and COPD or asthma status on ABC transporter gene expression in human airway epithelial cells

Aguiar, J. A.; Tamminga, A.; Lobb, B.; Huff, R. D.; Nguyen, J.; Kim, Y.; Dvorkin-Gheva, A.; Stampfli, M. R.; Doxey, A. C.; Hirota, J. A.

10.1101/369355 — bioinformatics — Posted on 2018-07-14

1328 Using taxon resampling to identify species with contrasting phylogenetic signals: an empirical example in Terrabacteria

Superson, A.; Phelan, D.; Dekovich, A.; Battistuzzi, F. U.

10.1101/369264 — bioinformatics — Posted on 2018-07-14

1329 Apomixis-related genes identified from a coexpression network in Paspalum notatum, a Neotropical grass

Oliveira, F. A. d.; Vigna, B. B. Z.; Silva, C. C. d.; Favero, A. P.; Matta, F. d. P.; Azevedo, A. L. S.; Souza, A. P. d.

10.1101/369280 — plant biology — Posted on 2018-07-14

1330 Genetic Diversity Patterns and Domestication Origin of Soybean

Jeong, S.-C.; Moon, J.-K.; Soo-Kwon Park, S.-K. P.; Kim, M.-S.; Lee, K.; Lee, S. R.; Jeong, N.; Choi, M. S.; Kim, N.; Kang, S.-T.; Park, E.

10.1101/369421 — plant biology — Posted on 2018-07-14

1331 It takes a dimer to tango: Oligomeric small heat-shock proteins dissociate to capture substrate

Santhanagopalan, I.; Degiacomi, M. T.; Shepherd, D. A.; Hochberg, G. K. A.; Benesch, J. L. P.; Vierling, E.

10.1101/369454 — molecular biology — Posted on 2018-07-14

1332 High-risk human papillomaviruses down-regulate expression of the Ste20 family kinase MST1 to inhibit the Hippo pathway and promote transformation

Morgan, E.; Patterson, M.; Lee, S. Y.; Wasson, C.; Macdonald, A.

10.1101/369447 — microbiology — Posted on 2018-07-14

1333 Multi-omics analysis of AML cells treated with azacitidine reveals highly variable cell surface proteome remodeling

Leung, K. K.; Nguyen, A.; Shi, T.; Tang, L.; Ni, X.; Escoubet, L.; MacBeth, K. J.; DiMartino, J.; Wells, J. A.

10.1101/369322 — cancer biology — Posted on 2018-07-14

1334 Theoretical Insights from Binding of Neigleria fowleri Cell Division Proteins with Amoebicidal Quassinoids

Basharat, Z.; Zaib, S.; Yasmin, A.

10.1101/367912 — bioinformatics — Posted on 2018-07-14

1335 A comprehensive anatomical map of the peripheral octopaminergic/tyraminergic system of Drosophila melanogaster

Pauls, D.; Blechschmidt, C.; Frantzmann, F.; el Jundi, B.; Selcho, M.

10.1101/368803 — neuroscience — Posted on 2018-07-14

1336 Stable sub-complexes observed in situ suggest a modular assembly pathway of the bacterial flagellar motor

Kaplan, M.; Subramanian, P.; Ghosal, D.; Oikonomou, C. M.; Pirbadian, S.; Starwalt-Lee, R.; Gralnick, J. A.; El-Naggar, M. Y.; Jensen, G. J.

10.1101/369405 — microbiology — Posted on 2018-07-14

1337 The structural complexity of the Gammaproteobacteria flagellar motor is related to the type of its torque-generating stators

Kaplan, M.; Ghosal, D.; Subramanian, P.; Oikonomou, C. M.; Kjaer, A.; Pirbadian, S.; Ortega, D. R.; El-Naggar, M. Y.; Jensen, G. J.

10.1101/369397 — microbiology — Posted on 2018-07-14

1338 Reconstitution of a flexible SYCP3-DNA fibre suggests a mechanism for SYCP3 coating of the meiotic chromosome axis

Bollschweiler, D.; Radu, L.; Plitzko, J. M.; Henderson, R. M.; Mela, I.; Pellegrini, L.

10.1101/369439 — biophysics — Posted on 2018-07-14

1339 Structural determinants of the interactions between Influenza A Virus Matrix protein M1 and lipid membranes

Hoefer, C. T.; Di Lella, S.; Dahmani, I.; Jungnick, N.; Bordag, N.; Bobone, S.; Huang, Q.; Keller, S.; Herrmann, A.; Chiantia, S.

10.1101/369462 — biophysics — Posted on 2018-07-14

1340 CNTN5-/+ or EHMT2-/+ iPSC-Derived Neurons from Individuals with Autism Develop Hyperactive Neuronal Networks

Deneault, E.; Faheem, M.; White, S. H.; Rodrigues, D. C.; Sun, S.; Wei, W.; Piekna, A.; Thompson, T.; Howe, J. L.; Chalil, L.; Kwan, V.; Walker, S.; Pasceri, P.; Roth, F. P.; Yuen, R. K.; Singh, K. K.; Ellis, J.; Scherer, S. W.

10.1101/368928 — neuroscience — Posted on 2018-07-14

1341 Asymmetric effective connectivity between primate anterior cingulate and lateral prefrontal cortex revealed by electrical microstimulation.

Nacher, V.; Hassani, S. A.; Womelsdorf, T.

10.1101/369488 — neuroscience — Posted on 2018-07-14

1342 Double Dissociation of Nicotinic alpha-7 and alpha-4/beta-2 Sub-receptor Agonists for Enhancing Learning and Attentional Filtering of Distraction

Azimi, M.; Oemisch, M.; Womelsdorf, T.

10.1101/369496 — neuroscience — Posted on 2018-07-14

1343 Glycosylation enzyme mRNA expression in dorsolateral prefrontal cortex of elderly patients with schizophrenia: Evidence for dysregulation of multiple glycosylation pathways

Mueller, T. M.; Simmons, M. S.; Helix, A. T.; Haroutunian, V.; Meador-Woodruff, J. H.

10.1101/369314 — neuroscience — Posted on 2018-07-14

1344 Context-specific regulation of monocyte surface IL7R expression and soluble receptor secretion by a common autoimmune risk allele

10.1101/262410 — immunology — Posted on 2018-07-14

1345 Parallel pattern of differentiation at a genomic island shared between clinal and mosaic hybrid zones in a complex of cryptic seahorse lineages

Riquet, F.; Liautard-Haag, C.; Woodall, L.; Bouza, C.; Louisy, P.; Hamer, B.; Otero-Ferrer, F.; Aublanc, P.; Beduneau, V.; Briard, O.; El Ayari, T.; Hochscheid, S.; Belkhir, K.; Arnaud-Haond, S.; Gagnaire, P.-A.; Bierne, N.

10.1101/161786 — evolutionary biology — Posted on 2018-07-14

1346 Reactivation of TAp73 tumor suppressor by protoporphyrin IX, a metabolite ofaminolevulinic acid, induces apoptosis in TP53-deficient cancer cells.

Sznarkowska, A.; Kostecka, A.; Koczergo, K.; Kawiak, A.; Acedo, P.; Lion, M.; Inga, A.; Zawacka-Pankau, J.

10.1101/357293 — cancer biology — Posted on 2018-07-14

1347 Mutant lamins cause mechanically-induced nuclear envelope rupture, DNA damage, and DNA-PK activation in muscle

Earle, A. J.; Kirby, T. J.; Fedorchak, G. R.; Isermann, P.; Patel, J.; Iruvanti, S.; Bonne, G.; Wallrath, L. L.; Lammerding, J.

10.1101/364778 — cell biology — Posted on 2018-07-14

1348 Delayed differentiation of vaginal and uterine microbiomes in dairy cows developing postpartum endometritis

Miranda-CasoLuengo, R.; Lu, J.; Williams, E. J.; Miranda-CasoLuengo, A.; Carrington, S. D.; Evans, A. C. O.; Meijer, W. G.

10.1101/365346 — microbiology — Posted on 2018-07-14

1349 Transcriptome analysis of Pv11 cells infers the mechanism of desiccation tolerance and recovery

Yamada, T. G.; Suetsugu, Y.; Deviatiiarov, R.; Gusev, O.; Cornette, R.; Nesmelov, A.; Hiroi, N.; Kikawada, T.; Funahashi, A.

10.1101/368175 — genomics — Posted on 2018-07-14

1350 McImpute: Matrix completion based imputation for single cell RNA-seq data

Mongia, A.; Sengupta, D.; Majumdar, A.

10.1101/361980 — bioinformatics — Posted on 2018-07-14

1351 Bayesian Model Selection Maps for group studies using M/EEG data

Harris, C. D.; Rowe, E. G.; Randeniya, R.; Garrido, M. I.

10.1101/365056 — neuroscience — Posted on 2018-07-13

1352 Open Force Field Consortium: Escaping atom types using direct chemical perception with SMIRNOFF v0.1

Mobley, D.; Bannan, C. C.; Rizzi, A.; Bayly, C. I.; Chodera, J. D.; Lim, V. T.; Lim, N. M.; Beauchamp, K. A.; Shirts, M. R.; Gilson, M. K.; Eastman, P. K.

10.1101/286542 — biophysics — Posted on 2018-07-13

1353 Using machine learning to guide targeted and locally-tailored empiric antibiotic prescribing in a children’s hospital in Cambodia

Oonsivilai, M.; Yin, M.; Luangasanatip, N.; Lubell, Y.; Miliya, T.; Tan, P.; Loeuk, L.; Turner, P.; Cooper, B. S.

10.1101/367037 — epidemiology — Posted on 2018-07-13

1354 Neuropsychological Test Performance of Cognitively Healthy Centenarians: Normative data from the Dutch 100-plus Study

Beker, N.; Sikkes, S.; Hulsman, M.; Schmand, B.; Scheltens, P.; Holstege, H.

10.1101/366328 — epidemiology — Posted on 2018-07-13

1355 Short cracks in knee meniscus tissue cause strain concentrations, but do not reduce ultimate stress, in single-cycle uniaxial tension

Peloquin, J. M.; Santare, M. H.; Elliott, D. M.

10.1101/292623 — bioengineering — Posted on 2018-07-13

1356 A novel virtual plus-maze for studying electrophysiological correlates of spatial reorientation

Torok, A.; Kobor, A.; Honbolygo, F.; Baker, T.

10.1101/369207 — neuroscience — Posted on 2018-07-13

1357 CRISPR-Cas9 human gene replacement and phenomic characterization in Caenorhabditis elegans to understand the functional conservation of human genes and decipher variants of uncertain significance

McDiarmid, T. A.; Au, V.; Loewen, A.; Liang, J. J. H.; Mizumoto, K.; Moerman, D. G.; Rankin, C. H.

10.1101/369249 — molecular biology — Posted on 2018-07-13

1358 Brd4 and P300 regulate zygotic genome activation through histone acetylation

Chan, S. H.; Tang, Y.; Miao, L.; Darwich-Codore, H.; Vejnar, C. E.; Beaudoin, J.-D.; Musaev, D.; Fernandez, J. P.; Moreno-Mateos, M. A.; Giraldez, A. J.

10.1101/369231 — developmental biology — Posted on 2018-07-13

1359 Complement C3-targeted gene therapy restricts onset and progression of neurodegeneration in chronic mouse glaucoma

Bosco, A.; Anderson, S. R.; Breen, K. T.; Romero, C. O.; Steele, M. R.; Chiodo, V. A.; Boye, S. L.; Hauswirth, W. W.; Tomlinson, S.; Vetter, M. L.

10.1101/369181 — neuroscience — Posted on 2018-07-13

1360 Individual variations of the human corticospinal tract and its hand-related motor fibers using diffusion MRI tractography

Dalamagkas, K.; Tsintou, M.; Rathi, Y.; O'Donnell, L. J.; Pasternak, O.; Gong, X.; Zhu, A.; Savadjiev, P.; Papadimitriou, G. M.; Kubicki, M.; Yeterian, E. H.; Makris, N.

10.1101/369199 — neuroscience — Posted on 2018-07-13

1361 transcranial Direct Current Stimulation Studies Open Database (tDCS-OD)

Grossman, P.; Alekseichuk, I.; de Lara, G.; Paneri, K.; Kunz, P.; Turi, Z.; Bikson, M.; Paulus, W.; Antal, A.

10.1101/369215 — neuroscience — Posted on 2018-07-13

1362 Distribution and asymptotic behavior of the phylogenetic transfer distance

Davila Felipe, M.; Domelevo Entfellner, J.-B.; Lemoine, F.; Truszkowski, J.; Gascuel, O.

10.1101/368993 — evolutionary biology — Posted on 2018-07-13

1363 Replisome preservation by a single-stranded DNA gate in the CMG helicase

Wasserman, M. R.; Schauer, G. D.; O'Donnell, M. E.; Liu, S.

10.1101/368472 — biophysics — Posted on 2018-07-13

1364 Portraits of genetic intra-tumour heterogeneity and subclonal selection across cancer types

Dentro, S. C.; Leshchiner, I.; Haase, K.; Tarabichi, M.; Wintersinger, J.; Deshwar, A. G.; Yu, K.; Rubanova, Y.; Macintyre, G.; Vazquez-Garcia, I.; Kleinheinz, K.; Livitz, D. G.; Malikic, S.; Donmez, N.; Sengupta, S.; Demeulemeester, J.; Anur, P.; Jolly, C.; Cmero, M.; Rosebrock, D.; Schumacher, S.; Fan, Y.; Fittall, M.; Drews, R. M.; Yao, X.; Lee, J.; Schlesner, M.; Zhu, H.; Adams, D. J.; Getz, G.; Boutros, P. C.; Imielinski, M.; Beroukhim, R.; Sahinalp, S. C.; Ji, Y.; Peifer, M.; Martincorena, I.; Markowetz, F.; Mustonen, V.; Yuan, K.; Gerstung, M.; Spellman, P. T.; Wang, W.; Morris, Q. D.;

10.1101/312041 — cancer biology — Posted on 2018-07-13

1365 An important role for periplasmic storage in Pseudomonas aeruginosa copper homeostasis revealed by a combined experimental and computational modeling study

Parmar, J. H.; Quintana, J.; Ramirez, D.; Laubenbacher, R.; Argüello, J. M.; Mendes, P.

10.1101/301002 — microbiology — Posted on 2018-07-13

1366 Female ornamentation and the fecundity trade-off in a sex-role reversed pipefish

Mobley, K. B.; Morrongiello, J. R.; Warr, M.; Bray, D.; Wong, B. B. M.

10.1101/290387 — evolutionary biology — Posted on 2018-07-13

1367 Genome-Wide Association Study of Body Fat Distribution identifies Novel Adiposity Loci and Sex-Specific Genetic Effects

Rask-Andersen, M.; Karlsson, T.; Ek, W. E.; Johansson, A.

10.1101/207498 — genetics — Posted on 2018-07-13

1368 Baldspot/ELOVL6 is a conserved modifier of disease and the ER stress response

Palu, R.; Chow, C. Y.

10.1101/261206 — genetics — Posted on 2018-07-13

1369 Interoperable and scalable data analysis with microservices: Applications in Metabolomics

Emami Khoonsari, P.; Moreno, P.; Bergmann, S.; Burman, J.; Capuccini, M.; Carone, M.; Cascante, M.; de Atauri, P.; Foguet, C.; Gonzalez-Beltran, A.; Hankemeier, T.; Haug, K.; He, S.; Herman, S.; Johnson, D.; Kale, N.; Larsson, A.; Neumann, S.; Peters, K.; Pireddu, L.; Rocca-Serra, P.; Roger, P.; Rueedi, R.; Ruttkies, C.; Sadawi, N.; Salek, R. M.; Sansone, S.-A.; Schober, D.; Selivanov, V.; Thevenot, E. A.; van Vliet, M.; Zanetti, G.; Steinbeck, C.; Kultima, K.; Spjuth, O.

10.1101/213603 — bioinformatics — Posted on 2018-07-13

1370 Guanine-nucleotide Exchange Modulator, GIV/Girdin, Serves as a Tunable Valve for Growth Factor-Stimulated Cyclic AMP Signals

Getz, M.; Swanson, L.; Sahoo, D.; Ghosh, P.; Rangamani, P.

10.1101/149781 — systems biology — Posted on 2018-07-13

1371 Male and female mice demonstrate divergent cellular responses in the bed nucleus of stria terminalis (BNST) following morphine withdrawal

Luster, B. R.; Cogan, E. S.; Schmidt, K. T.; Pati, D.; Pina, M. M.; Dange, K.; McElligott, Z. A.

10.1101/369173 — neuroscience — Posted on 2018-07-13

1372 Floral herbivory does not reduce pollination-mediated fitness in shelter rewarding Royal Irises

Ghara, M.; Ewerhardy, C.; Yardeni, G.; Matzliach, M.; Sapir, Y.

10.1101/184382 — ecology — Posted on 2018-07-13

1373 High JNK following Ras/Rpr/Tak1 over-expression in imaginal discs of Drosophila reduces post-pupariation ecdysone via Dilp8 resulting in early pupal death

Ray, M.; Lakhotia, S. C.

10.1101/049882 — developmental biology — Posted on 2018-07-13

1374 Computational fluid dynamic analysis reveals the underlying physical forces playing a role in 3D multiplex brain organoid cultures

Goto-Silva, L.; Ayad, N.; Herzog, I.; Silva, N.; Lamien, B.; Orlande, H.; da Costa Souza, A.; Ribeiro, S.; Martins, M.; Domont, G.; Junqueira, M.; Tovar-Moll, F.; Rehen, S.

10.1101/369082 — bioengineering — Posted on 2018-07-13

1375 Mammalian vesicular glutamate transporter VGLUT1 reduces synaptic vesicle superpool size and spontaneous release frequency.

Zhang, X. M.; Francois, U.; Silm, K.; Angelo, M. F.; Fernandez Busch, M. V.; Maged, M.; Martin, C.; Cordelieres, F. P.; Deshors, M.; Pons, S.; Maskos, U.; Bemelmans, A. P.; Wojcik, S. M.; El Mestikawy, S.; Humeau, Y.; Herzog, E.

10.1101/368811 — neuroscience — Posted on 2018-07-13

1376 Multiscale Adaptive Gabor Expansion (MAGE): Improved Detection of Transient Oscillatory Burst Amplitude and Phase

Canolty, R. T.; Womelsdorf, T.

10.1101/369116 — neuroscience — Posted on 2018-07-13

1377 Confidence boosts serial dependence in orientation estimation

Samaha, J.; Switzky, M.; Postle, B. R.

10.1101/369140 — neuroscience — Posted on 2018-07-13

1378 Diversification rates and phylogenies: what are we estimating, and how good are the estimates?

Title, P. O.; Rabosky, D.

10.1101/369124 — evolutionary biology — Posted on 2018-07-13

1379 Estrogen-independent molecular actions of mutant estrogen receptor alpha in endometrial cancer

Blanchard, Z.; Vahrenkamp, J. M.; Berrett, K. C.; Arnesen, S.; Gertz, J.

10.1101/369165 — cancer biology — Posted on 2018-07-13

1380 Spatio-Temporal Network Dynamics of Genes Underlying Schizophrenia

Chellappa S, A.; Pathak, A. K.; Sinha, P.; Jainarayanan, A. K.; Jain, S.; Brahmachari, S. K.

10.1101/369090 — bioinformatics — Posted on 2018-07-13

1381 Underlying mechanisms and ecological consequences of variation in exploratory behavior of the Argentine ant, Linepithema humile

Pinter-Wollman, N.; Page, H.; Sweeney, A.; Pilko, A.

10.1101/369132 — animal behavior and cognition — Posted on 2018-07-13

1382 Modeling second-order boundary perception: A machine learning approach

DiMattina, C.; Baker, C. L.

10.1101/369041 — neuroscience — Posted on 2018-07-13

1383 Tau protein aggregation induces cellular senescence in the brain.

Musi, N.; Valentine, J. M.; Sickora, K. R.; Baeuerle, E.; Thompson, C. S.; Zapata, A.; Shen, Q.; Orr, M. E.

10.1101/369074 — neuroscience — Posted on 2018-07-13

1384 Stimulus statistics and HCN current mediated resonance sets the scale of input-output mapping in Stellate cells of the Medial Entorhinal Cortex

Katyare, N.; Sikdar, S.

10.1101/369025 — neuroscience — Posted on 2018-07-13

1385 Apparent thinning of visual cortex during childhood is associated with myelination, not pruning

Natu, V. S.; Gomez, J.; Barnett, M.; Jeska, B.; Kirilina, E.; Jaeger, C.; Zhen, Z.; Cox, S.; Weiner, K. S.; Weiskopf, N.; Grill-Spector, K.

10.1101/368274 — neuroscience — Posted on 2018-07-13

1386 Differential retention of transposable element-derived sequences in outcrossing Arabidopsis genomes

Legrand, S.; Caron, T.; Maumus, F.; Schvartzman, S.; Quadrana, L.; Durand, E.; Gallina, S.; Pauwels, M.; Mazoyer, C.; Huyghe, L.; Colot, V.; Hanikenne, M.; Castric, V.

10.1101/368985 — evolutionary biology — Posted on 2018-07-13

1387 Preventing photomorbidity in long-term multi-color fluorescence imaging of S. cerevisiae and S. pombe

Schmidt, G. W.; Cuny, A. P.; Fabian, R.

10.1101/180018 — cell biology — Posted on 2018-07-13

1388 G-quadruplex dynamics contribute to epigenetic regulation of mitochondrial function

Falabella, M.; Kolesar, J. E.; Xiang, I. M.; Wang, T.; Horne, W.; Wallace, C.; Sun, L.; Taguchi, Y.; Wang, C.; Turek-Herman, J.; St Croix, C.; Sondheimer, N.; Yatsunyk, L.; Johnson, F. B.; Kaufman, B.

10.1101/359703 — molecular biology — Posted on 2018-07-13

1389 Using the Wax moth larva Galleria mellonella infection model to detect emerging waterborne bacterial pathogens

Hernandez, R.; Hesse, E.; Dowling, A.; Coyle, N.; Feil, E.; Gaze, W.; Vos, M.

10.1101/327015 — microbiology — Posted on 2018-07-13

1390 Accuracy, limitations and cost-efficiency of eDNA-based community survey in tropical frogs

Balint, M.; Nowak, C.; Marton, O.; Pauls, S.; Wittwer, C.; Aramayo, J. L.; Schulze, A.; Chambert, T.; Cocchiararo, B.; Jansen, M.

10.1101/176065 — ecology — Posted on 2018-07-13

1391 An Indexing Theory for Working Memory based on Fast Hebbian Plasticity

Fiebig, F.; Herman, P.; Lansner, A.

10.1101/334821 — neuroscience — Posted on 2018-07-13

1392 A transition from SoxB1 to SoxE transcription factors is essential for progression from pluripotent blastula cells to neural crest cells

Buitrago-Delgado, E.; Schock, E.; Nordin, K.; LaBonne, C.

10.1101/359752 — developmental biology — Posted on 2018-07-13

1393 Faces and voices in the brain: a modality-general person-identity representation in superior temporal sulcus

Tsantani, M.; Kriegeskorte, N.; McGettigan, C.; Garrido, L.

10.1101/338475 — neuroscience — Posted on 2018-07-13

1394 Is coding a relevant metaphor for the brain?

Brette, R.

10.1101/168237 — neuroscience — Posted on 2018-07-13

1395 Transcriptome analysis of Pv11 cells infers the mechanism of desiccation tolerance and recovery

Yamada, T. G.; Suetsugu, Y.; Deviatiiarov, R.; Gusev, O.; Cornette, R.; Nesmelov, A.; Hiroi, N.; Kikawada, T.; Funahashi, A.

10.1101/368175 — genomics — Posted on 2018-07-13

1396 Transgenic Zebrafish Models Reveal Distinct Molecular Mechanisms for Cataract-linked αA-Crystallin Mutants

Wu, S.-Y.; Zou, P.; Mishra, S.; Mchaourab, H. S.

10.1101/364125 — genetics — Posted on 2018-07-13

1397 Super-resolution fight club: A broad assessment of 2D & 3D single-molecule localization microscopy software

Sage, D.; Pham, T.-A.; Babcock, H.; Lukes, T.; Pengo, T.; Chao, J.; Velmurugan, R.; Herbert, A.; Agrawal, A.; Colabrese, S.; Wheeler, A.; Archetti, A.; Rieger, B.; Ober, R.; Hagen, G. M.; Sibarita, J.-B.; Ries, J.; Henriques, R.; Unser, M.; Holden, S.

10.1101/362517 — biophysics — Posted on 2018-07-13

1398 pKa measurements for the SAMPL6 prediction challenge for a set of kinase inhibitor-like fragments

Isık, M.; Levorse, D.; Rustenburg, A. S.; Ndukwe, I. E.; Wang, H.; Wang, X.; Reibarkh, M.; Martin, G. E.; Makarov, A. A.; Mobley, D. L.; Rhodes, T.; Chodera, J. D.

10.1101/368787 — biophysics — Posted on 2018-07-13

1399 Whole genome sequencing identifies high-impact variants in well-known pharmacogenomic genes

Choi, J.; Tantisira, K.; Duan, Q.

10.1101/368225 — bioinformatics — Posted on 2018-07-13

1400 Comparative analyses of anther development in natural populations indicate premature degradation of sporogenous tissue as a cause of male sterility in Gaultheria fragrantissima

Langstang, W.; Kharshiing, E.; Venugopal, N.

10.1101/368886 — plant biology — Posted on 2018-07-13

1401 A central control circuit for encoding perceived food value

Crossley, M.; Staras, K.; Kemenes, G.

10.1101/368969 — neuroscience — Posted on 2018-07-13

1402 CorShrink : Empirical Bayes shrinkage estimation of correlations, with applications

dey, k. K.; Stephens, M.

10.1101/368316 — genetics — Posted on 2018-07-13

1403 The malaria-protective human glycophorin structural variant DUP4 shows somatic mosaicism and association with hemoglobin levels

Algady, W.; Louzada, S.; Carpenter, D.; Brajer, P.; Färnert, A.; Rooth, I.; Yang, F.; Shaw, M.-A.; Hollox, E.

10.1101/360453 — genetics — Posted on 2018-07-13

1404 Evaluation of habitat protection under the European Natura 2000 conservation network - the example for Germany

Friedrichs, M.; Hermoso, V.; Bremerich, V.; Langhans, S. D.

10.1101/359125 — ecology — Posted on 2018-07-13

1405 VarSome: The Human Genomic Variant SearchEngine

Kopanos, C.; Tsiolkas, V.; Kouris, A.; Chapple, C. E.; Albarca Aguilera, M.; Meyer, R.; Massouras, A.

10.1101/367359 — bioinformatics — Posted on 2018-07-13

1406 A regulatory-sequence classifier with a neural network for genomic information processing

Onimaru, K.; Nishimura, O.; Kuraku, S.

10.1101/355974 — bioinformatics — Posted on 2018-07-13

1407 The Female Heart: Sex Differences in the Signal Dynamics of ECG in Response to Stress

Adjei, T.; Xue, J.; Mandic, D.

10.1101/368845 — bioengineering — Posted on 2018-07-13

1408 High cost of bias: Diminishing marginal returns on NIH grant funding to institutions

Wahls, W. P.

10.1101/367847 — scientific communication and education — Posted on 2018-07-13

1409 Identification of novel RNA viruses associated to bird’s-foot trefoil (Lotus corniculatus)

Debat, H. J.; Bejerman, N.

10.1101/368944 — plant biology — Posted on 2018-07-13

1410 Transcriptome analysis of Pv11 cells infers the mechanism of desiccation tolerance and recovery

Yamada, T. G.; Suetsugu, Y.; Deviatiiarov, R.; Gusev, O.; Cornette, R.; Nesmelov, A.; Hiroi, N.; Kikawada, T.; Funahashi, A.

10.1101/368175 — genomics — Posted on 2018-07-13

1411 A fish rots from the head down: how to use the leading digits of ecological data to detect their falsification.

Cerri, J.

10.1101/368951 — ecology — Posted on 2018-07-13

1412 NG-meta-profiler: fast processing of metagenomes using NGLess, a domain-specific language

Coelho, L. P.; Alves, R.; Monteiro, P.; Huerta-Cepas, J.; Freitas, A. T.; Bork, P.

10.1101/367755 — bioinformatics — Posted on 2018-07-13

1413 Dynamic Distribution Decomposition for Single-Cell Snapshot Time Series Identifies Subpopulations and Trajectories during iPSC Reprogramming

Taylor-King, J.; Riseth, A.; Claassen, M.

10.1101/367789 — systems biology — Posted on 2018-07-13

1414 SosA inhibits cell division in Staphylococcus aureus in response to DNA damage

Bojer, M. S.; Wacnik, K.; Kjelgaard, P.; Gallay, C.; Bottomley, A. L.; Cohn, M. T.; Lindahl, G.; Frees, D.; Veening, J.-W.; Foster, S. J.; Ingmer, H.

10.1101/364299 — microbiology — Posted on 2018-07-13

1415 Screening of candidate substrates and coupling ions of transporters by thermostability shift assays

Majd, H.; King, M.; Palmer, S. M.; Smith, A.; Elbourne, L.; Paulsen, I.; Sharples, D.; Henderson, P.; Kunji, E. R. S.

10.1101/367805 — biophysics — Posted on 2018-07-13

1416 Muscleblind regulates Drosophila Dscam2 cell-type-specific alternative splicing

Li, J. S. S.; Millard, S. S.

10.1101/297101 — neuroscience — Posted on 2018-07-13

1417 An adipocyte light-Opsin 3 pathway regulates the circadian clock and energy balance.

Vemaraju, S.; Nayak, G.; Buhr, E. D.; Odaka, Y.; Zhang, K. X.; Mocko, J. A.; Smith, A. N.; Upton, B. A.; Zhan, J. J.; Borra, V. J.; Bernhard, E.; Murakami, K.; Nguyen, M.-t.; Gordon, S. A.; Wu, G.; Schmidt, R.; Mei, X.; Petts, N. T.; Batie, M.; Rao, S.; Hogenesch, J. B.; Nakamura, T.; Van Gelder, R. N.; Lang, R. A.

10.1101/368373 — physiology — Posted on 2018-07-13

1418 A hybrid de novo genome assembly of the honeybee, Apis mellifera, with chromosome-length scaffolds

Wallberg, A.; Bunikis, I.; Vinnere Pettersson, O.; Mosbech, M.-B.; Childers, A. K.; Evans, J. D.; Mikheyev, A. S.; Robertson, H. M.; Robinson, G. E.; Webster, M. T.

10.1101/361469 — genomics — Posted on 2018-07-13

1419 Reconstruction of the Decidual Pathways in Human Endometrial Cells Using Single-Cell RNA-Seq

Lucas, E. S.; Vrljicak, P.; Diniz da Costa, M. M.; Brighton, P. J.; Kong, C. S.; Lipecki, J.; Fishwick, K.; Muter, J.; Ott, S.; Brosens, J. J.

10.1101/368829 — systems biology — Posted on 2018-07-13

1420 Analysis of Local Variability and Allostery in Macromolecular Assemblies using Cryo-EM and Focused Classification

Zhang, C.; Cantara, W.; Jeon, Y.; Musier-Forsyth, K.; Grigorieff, N.; Lyumkis, D.

10.1101/365940 — biophysics — Posted on 2018-07-13

1421 N-terminal BRCT domains of the DNA damage checkpoint proteins TOPBP1/Rad4 display distinct specificities for phosphopeptide ligands

Day, M.; Rappas, M.; Ptasinska, K.; Boos, D.; Oliver, A.; Pearl, L.

10.1101/368936 — biochemistry — Posted on 2018-07-13

1422 Regional diversity in the postsynaptic proteome of the mouse brain

Roy, M.; Sorokina, O.; McLean, C.; Tapia-Gonzalez, S.; DeFelipe, J.; Armstrong, J. D.; Grant, S. G. N.

10.1101/368910 — neuroscience — Posted on 2018-07-13

1423 The Feeding Connectome: Convergence of Monosynaptic and Polysynaptic Sensory Paths onto Common Motor Outputs

Miroschnikow, A.; Schlegel, P.; Schoofs, A.; Hueckesfeld, S.; Li, F.; Schneider-Mizell, C. M.; Fetter, R. D.; Truman, J.; Cardona, A.; Pankratz, M. J.

10.1101/368878 — neuroscience — Posted on 2018-07-13

1424 A mathematical model of the effect of natural selection on adaptation forms that implemented by disruptive coloration of Taurotragus oryx

Bespalov, Y.; Nosov, K.; Kabalyants, P.

10.1101/368084 — systems biology — Posted on 2018-07-13

1425 The hippocampus and neocortical inhibitory engrams protect against memory interference

Koolschijn, R. S.; Emir, U. E.; Pantelides, A. C.; Nili, H.; Behrens, T. E. J.; Barron, H. C.

10.1101/366377 — neuroscience — Posted on 2018-07-13

1426 PhyloPi: an affordable, purpose built phylogenetic pipeline for the HIV drug resistance testing facility

Bester, P. A.; De Vries, A.; Riekert, S. J.; Steegen, K.; van Zyl, G.; Goedhals, D.

10.1101/367946 — bioinformatics — Posted on 2018-07-13

1427 Fibroblast growth factor is predicted to dominate MAPK activation by pro-angiogenic factors

Song, M.; Finley, S. D.

10.1101/368415 — systems biology — Posted on 2018-07-13

1428 Asymmetric perirenal brown adipose dormancy in adult humans is defined by local sympathetic activity

Jespersen, N. Z.; Feizi, A.; Andersen, E. S.; Heywood, S.; Hattel, H. B.; Daugaard, S.; Bagi, P.; Feldt-Rasmussen, B.; Schultz, H. S.; Hansen, N. S.; Krogh-Madsen, R.; Pedersen, B. K.; Petrovic, N.; Nielsen, S.; Scheele, C.

10.1101/368621 — physiology — Posted on 2018-07-13

1429 Reduced repertoire of cortical microstates and neuronal ensembles in medically-induced loss of consciousness

Wenzel, M.; Han, S.; Smith, E. H.; Erik, H.; Greger, B.; House, P. A.; Yuste, R.

10.1101/358168 — neuroscience — Posted on 2018-07-13

1430 Mendelian Randomization Analysis Using Mixture Models (MRMix) for Genetic Effect-Size-Distribution Leads to Robust Estimation of Causal Effects

Qi, G.; Chatterjee, N.

10.1101/367821 — genetics — Posted on 2018-07-13

1431 Detecting adaptive differentiation in structured populations with genomic data and common gardens

Josephs, E. B.; Berg, J. J.; Ross-Ibarra, J.; Coop, G.

10.1101/368506 — evolutionary biology — Posted on 2018-07-13

1432 Expansion of a core regulon in specialized metabolism by mobile genetic elements promotes chemical diversity in Arabidopsis thaliana

Barco, B.; Kim, Y.; Clay, N. K.

10.1101/368340 — evolutionary biology — Posted on 2018-07-13

1433 Exocyst subunit Sec6 is positioned by microtubule overlaps in the moss phragmoplast prior to the arrival of cell plate membrane

Tang, H.; de Keijzer, J.; Overdijk, E.; Sweep, E.; Steentjes, M.; Vermeer, J.; Janson, M.; Ketelaar, T.

10.1101/368860 — cell biology — Posted on 2018-07-13

1434 MTrack: Automated Detection, Tracking, and Analysis of Dynamic Microtubules

Kapoor, V.; Hirst, W. G.; Hentschel, C.; Preibisch, S.; Reber, S.

10.1101/368191 — biophysics — Posted on 2018-07-13

1435 Parameterization of Proximal Humerus Locking Plate Impingement with In Vitro, In Silico, and In Vivo Techniques

Bachner, E. M.; Schmidt, E. C.; Chine, M.; Namdari, S.; Baxter, J. R.; Hast, M. W.

10.1101/368258 — bioengineering — Posted on 2018-07-13

1436 Mapping In Vivo O-Glycoproteome Using Site-specific Extraction of O-linked glycopeptides (EXoO)

Yang, W.; Ao, M.; Hu, Y.; Li, Q.; Zhang, H.

10.1101/368282 — systems biology — Posted on 2018-07-13

1437 Objective Evaluation of Multiple Sclerosis Lesion Segmentation using a Data Management and Processing Infrastructure

Commowick, O.; Istace, A.; Kain, M.; Laurent, B.; Leray, F.; Simon, M.; Camarasu-Pop, S.; Girard, P.; Ameli, R.; Ferre, J.-C.; Kerbrat, A.; Tourdias, T.; Cervenansky, F.; Glatard, T.; Beaumont, J.; Doyle, S.; Forbes, F.; Knight, J.; Khademi, A.; Mahbod, A.; Wang, C.; McKinley, R.; Wagner, F.; Muschelli, J.; Sweeney, E.; Roura, E.; Llado, X.; Santos, M. M.; Santos, W. P.; Silva-Filho, A. G.; Tomas-Fernandez, X.; Urien, H.; Bloch, I.; Valverde, S.; Cabezas, M.; Vera-Olmos, F. J.; Malpica, N.; Guttmann, C.; Vukusic, S.; Edan, G.; Dojat, M.; Styner, M.; Warfield, S. K.; Cotton, F.; Barillot, C.

10.1101/367557 — neuroscience — Posted on 2018-07-13

1438 Two Sides of the Same Coin: The Hippocampus as a Common Neural Substrate for Model-Based Planning and Spatial Memory

Vikbladh, O. M.; Meager, M. R.; King, J.; Blackmon, K.; Devinsky, O.; Shohamy, D.; Burgess, N.; Daw, N. D.

10.1101/359232 — neuroscience — Posted on 2018-07-13

1439 Motor cortex can modulate somatosensory processing via cortico-thalamo-cortical pathway

Lohse, M.; Cooper, M.; Sader, E. N.; Langfelder, A.; Kahn, M. C.; Baxter, L.; Bartram, J.; Phillips, J. W.; Upton, A. L.; Mann, E. O.

10.1101/366567 — neuroscience — Posted on 2018-07-13

1440 Motion and physiological noise effects on amygdala real-time fMRI neurofeedback learning

Hellrung, L.; Borchardt, V.; Gotting, F. N.; Stadler, J.; Tempelmann, C.; Tobler, P.; Walter, M.; van der Meer, J.

10.1101/366138 — neuroscience — Posted on 2018-07-13

1441 Dorsal Premotor Contributions to Auditory Rhythm Perception: Causal Transcranial Magnetic Stimulation Studies of Interval, Tempo, and Phase

Ross, J. M.; Iversen, J. R.; Balasubramaniam, R. R.

10.1101/368597 — neuroscience — Posted on 2018-07-13

1442 Effects of thermal stress on amount, composition, and antibacterial properties of coral mucus

Wright, R. M.; Strader, M.; Genuise, H. M.; Matz, M.

10.1101/368332 — molecular biology — Posted on 2018-07-13

1443 Parl Deficiency In Mouse Causes Coenzyme Q Depletion, Complex III Defects, And Leigh-Like Syndrome

Spinazzi, M.; Radaelli, E.; Horre, K.; Arranz, A.; Gounko, N.; Agostinis, P.; Impens, F.; Morais, V.; Lopez-Lluch, G.; Serneels, L.; Navas, P.; De Strooper, B.

10.1101/368654 — molecular biology — Posted on 2018-07-13

1444 Varicose veins of lower extremities: insights from the first large-scale genetic study

Shadrina, A. S.; Sharapov, S. Z.; Shashkova, T. I.; Tsepilov, Y. A.

10.1101/368365 — genomics — Posted on 2018-07-13

1445 Concordance Of Genetic Variation That Increases Risk For Tourette Syndrome And That Influences Its Underlying Neurocircuitry

Mufford, M. S.; Cheung, J.; Jahanshad, N.; Ding, L.; van der Merwe, C.; Groenewold, N.; Koen, N.; Chimusa, E. R.; Dalvie, S.; Ramesar, R.; Psychiatric Genomics Consortium - Tourette Syndrome working group, ; Knowles, J. A.; Lochner, C.; Hibar, D. P.; Paschou, P.; van den Heuvel, O. A.; Medland, S. E.; Scharf, J. M.; Mathews, C. A.; Thompson, P. M.; Stein, D. J.

10.1101/366294 — genomics — Posted on 2018-07-13

1446 Epi-fluorescence Microscopy of Single Molecule DNA Denaturation in situ

Sharma, P.

10.1101/368423 — genomics — Posted on 2018-07-13

1447 Dispersal-dependent juvenile survival in a sexually dimorphic long-lived bird, the Greater Flamingo Phoenicopterus roseus

Souchay, G.; Barbraud, C.; Germain, C.; Bechet, A.

10.1101/368068 — ecology — Posted on 2018-07-13

1448 Integrating global patterns and drivers of tree diversity across a continuum of spatial grains

Keil, P.; Chase, J.

10.1101/367961 — ecology — Posted on 2018-07-13

1449 The effect of spatial variation for predicting aphid epidemics

Damgaard, C.; Bruus, M.; Axelsen, J. A.

10.1101/367953 — ecology — Posted on 2018-07-13

1450 A cell cycle-coordinated nuclear compartment for Polymerase II transcription encompasses the earliest gene expression before global genome activation

10.1101/366468 — developmental biology — Posted on 2018-07-13

1451 Myoglianin triggers the pre-metamorphosis stage in hemimetabolan insects

Kamsoi, O.; Belles, X.

10.1101/368746 — developmental biology — Posted on 2018-07-13

1452 Quantification of differential transcription factor activity and multiomic-based classification into activators and repressors: diffTF

Berest, I.; Arnold, C.; Reyes-Palomares, A.; Palla, G.; Rasmussen, K. D.; Helin, K.; Zaugg, J.

10.1101/368498 — bioinformatics — Posted on 2018-07-13

1453 PLUG (Pruning of Local Unrealistic Geometries) removes restrictions on biophysical modeling for protein design

Hallen, M.

10.1101/368522 — bioinformatics — Posted on 2018-07-13

1454 A systems and treatment perspective of models of influenza virus-induced host responses

Mochan, E.; Ackerman, E. E.; Shoemaker, J. E.

10.1101/368241 — synthetic biology — Posted on 2018-07-13

1455 Golden Orbweavers Ignore Biological Rules: Phylogenomic and Comparative Analyses Unravel a Complex Evolution of Sexual Size Dimorphism

Kuntner, M.; Hamilton, C. A.; Cheng, R.-C.; Gregoric, M.; Lupse, N.; Lokovsek, T.; Lemmon, E.; Lemmon, A.; Agnarsson, I.; Coddington, J. A.; Bond, J. E.

10.1101/368233 — evolutionary biology — Posted on 2018-07-13

1456 Transgenerational effect of adult density through paternal effect in Drosophila melanogaster

Dasgupta, P.; Sarkar, S.; Das, A. A.; Verma, T.; Nandy, B.

10.1101/368613 — evolutionary biology — Posted on 2018-07-13

1457 Reversible solidification of fission yeast cytoplasm after prolonged nutrient starvation

Heimlicher, M. B.; Bächler, M.; Ibeneche-Nnewihe, C.; Florin, E.-L.; Hoenger, A.; Brunner, D.

10.1101/368076 — cell biology — Posted on 2018-07-13

1458 Lmx1a drives Cux2 expression in the cortical hem through activation of a conserved intronic enhancer.

Fregoso, S. P.; Dwyer, B. E.; Franco, S. J.

10.1101/368555 — neuroscience — Posted on 2018-07-13

1459 Transcriptional Profiling of Patient Isolates Identifies a Novel TOR Regulatory Pathway in Cryptococcal Virulence

Park, Y.-D.; Jarvis, J. N.; Hu, G.; Davis, S. E.; Qiu, J.; Zhang, N.; Hollingsworth, C.; Loyse, A.; Gardina, P. J.; Valyi-Nagy, T.; Myers, T. G.; Harrison, T. S.; Bicanic, T.; Williamson, P. R.

10.1101/368738 — microbiology — Posted on 2018-07-13

1460 Marker-assisted pyramiding of two major broad-spectrum bacterial blight resistance genes, Xa21 and Xa33 into an elite maintainer line of rice, DRR17B

CH, B.; Naik, B. S.; Kumar, A. V.; G, H.; Swamy, M. H.; Masood, H. S.; Kumar, D. T.; Miriyala, A.; Kale, R.; A, Y.; Pranathi, K.; Koushik, M. B.; Kota, S.; Bhadana, V.; Hariprasad, A. S.; Laha, G. S.; Rekha, G.; Balachandran, S. M.; Madav, S. M.; Senguttuvel, P.; Fiyaz, A. R.; Viraktamath, B. C.; Giri, A.; Swamy, M. B.; Ali, J.; Sundram, R. M.

10.1101/368712 — plant biology — Posted on 2018-07-13

1461 High-throughput yeast two-hybrid library screening using next generation sequencing

Goossens, A.; Erffelinck, M.-L.; Ribeiro, B.; Perassolo, M.; Pauwels, L.; Pollier, J.; Storme, V.

10.1101/368704 — molecular biology — Posted on 2018-07-13

1462 Occidiofungin, an actin binding antifungal with in vivo efficacy in a vulvovaginal candidiasis infection

Ravichandran, A.; Geng, M.; Hull, K. G.; Romo, D.; Lu, S.-E.; Albee, A.; Nutter, C.; Gordon, D.; Ghannoum, M. A.; Lockless, S. W.; Smith, L.

10.1101/368720 — microbiology — Posted on 2018-07-13

1463 KS-Burden: Assessing distributional differences of rare variants in dichotomous traits

Porsch, R. M.; Mak, T.; Tang, C.; Sham, P.

10.1101/368696 — bioinformatics — Posted on 2018-07-13

1464 SOD1 activity thresholds and TOR signalling modulate VAP(P58S) aggregation via ROS-induced proteasomal degradation in a Drosophila model of Amyotrophic Lateral Sclerosis

Chaplot, K.; Pimpale, L.; Ramalingam, B.; Deivasigamani, S.; Kamat, S.; Ratnaparkhi, G. S.

10.1101/368100 — neuroscience — Posted on 2018-07-13

1465 Local Enrichment of HP1alpha at Telomeres Alters Their Structure and Regulation of Telomere Protection

Chow, T. T.; Shi, X.; Wei, J.-H.; Guan, J.; Stadler, G.; Huang, B.; Blackburn, E. H.

10.1101/368464 — cell biology — Posted on 2018-07-13

1466 Inducing controlled cell cycle arrest and re-entry during asexual proliferation of Plasmodium falciparum malaria parasites.

Van Biljon, R. A.; Niemand, J.; van Wyk, R. D.; Clark, K.; Brider, B.; Abrie, C.; Von Gruning, H.; Smidt, W.; Smit, A.; Reader, J.; Painter, H.; Llinas, M.; Doerig, C.; Birkholtz, L.-M.

10.1101/368431 — cell biology — Posted on 2018-07-13

1467 Comprehensive analysis of immune evasion in breast cancer by single-cell RNA-seq

10.1101/368605 — cancer biology — Posted on 2018-07-13

1468 Covalent Modification and Regulation of the Nuclear Receptor Nurr1 by a Dopamine Metabolite

Bruining, J. M.; Wang, Y.; Oltrabella, F.; Tian, B.; Liu, H.; Bhattacharya, P.; Guo, S.; Holton, J. M.; Fletterick, R. J.; Jacobson, M. P.; England, P. M.

10.1101/368399 — biophysics — Posted on 2018-07-13

1469 Dynamic Measurements of Bovine Serum Albumin Aggregation Using Small Angle Neutron Scattering

Austerberry, J. I.; Belton, D.

10.1101/368092 — biophysics — Posted on 2018-07-13

1470 CRISPR/Cas9 gene editing for the creation of an MGAT1 deficient CHO cell line to control HIV-1 vaccine glycosylation

Byrne, G.; O'Rourke, S. M.; Alexander, D. L.; Yu, B.; Doran, R.; Wright, M.; Chen, Q.; Azadi, P.; Berman, P. W.

10.1101/368357 — bioengineering — Posted on 2018-07-13

1471 Saccharomyces cerevisiae adapted to grow in the presence of low-dose rapamycin exhibit altered amino acid metabolism

Dikicioglu, D.; Dereli Eke, E.; Eraslan, S.; Oliver, S. G.; Kirdar, B.

10.1101/368266 — biochemistry — Posted on 2018-07-13

1472 Fluoxetine effects on behavior and adult hippocampal neurogenesis in female C57BL/6J mice across the estrous cycle

Yohn, C. N.; Shifman, S.; Garino, A.; Diethorn, E.; Bokka, L.; Ashamalla, S. A.; Samuels, B. A.

10.1101/368449 — neuroscience — Posted on 2018-07-13

1473 Towards fast and reliable simultaneous EEG-fMRI analysis of epilepsy with automatic spike detection

Omidvarnia, A.; Kowalczyk, M.; Pedersen, M.; Jackson, G.

10.1101/361113 — neuroscience — Posted on 2018-07-12

1474 Mutators as drivers of adaptation in pathogenic bacteria and a risk factor for host jumps and vaccine escape: insights into evolutionary epidemiology of the global aquatic pathogen Streptococcus iniae

Silayeva, O.; Engelstaedter, J.; Barnes, A. C.

10.1101/355412 — microbiology — Posted on 2018-07-12

1475 Utilizing random regression models for genomic prediction of a longitudinal trait derived from high-throughput phenotyping

Campbell, M. T.; Walia, H.; Morota, G.

10.1101/319897 — genomics — Posted on 2018-07-12

1476 Measuring genetic differentiation from Pool-seq data

Hivert, V.; Leblois, R.; Petit, E.; Gautier, M.; Vitalis, R.

10.1101/282400 — evolutionary biology — Posted on 2018-07-12

1477 Individuals with clinically relevant autistic traits tend to have an eye for detail

Alink, A.; Charest, I.

10.1101/367532 — neuroscience — Posted on 2018-07-12

1478 RNASeq analysis of Aedes albopictus mosquitoes during chikungunya virus infection

Vedururu, R.; Neave, M. J.; Tachedjian, M.; Gorry, P. R.; Duchemin, J.-B.; Paradkar, P. N.

10.1101/367235 — microbiology — Posted on 2018-07-12

1479 A bacterial display system for effective selection of protein-biotin ligase BirA variants with novel peptide specificity

Granhoej, J.; Dimke, H.; Svenningsen, P.

10.1101/367730 — bioengineering — Posted on 2018-07-12

1480 Lineage tracing using a Cas9-deaminase barcoding system targeting endogenous L1 elements

Hwang, B.; Lee, W.; Yum, S.; Jeon, Y.; Cho, N.; Jang, G.; Bang, D.

10.1101/367177 — genomics — Posted on 2018-07-12

1481 Rheumatoid arthritis heritability is concentrated in regulatory elements with CD4+ T cell-state-specific transcription factor binding profiles

Amariuta, T.; Luo, Y.; Gazal, S.; Davenport, E. E.; van de Geijn, B.; Westra, H.-J.; Teslovich, N.; Okada, Y.; Yamamoto, K.; RACI Consortium, ; GARNET Consortium, ; Price, A.; Raychaudhuri, S.

10.1101/366864 — genetics — Posted on 2018-07-12

1482 A novel interplay between GEFs orchestrates Cdc42 activation in cell polarity and cytokinesis

Hercyk, B.; Rich, J.; Das, M. E.

10.1101/364786 — cell biology — Posted on 2018-07-12

1483 Quantitative behavior of protein complexes in human cells

Hajkarim, M. C.; Tsiamis, V.; Käll, L.; Vandin, F.; Schwämmle, V.

10.1101/367227 — bioinformatics — Posted on 2018-07-12

1484 Transcriptional regulatory mechanisms of fibrosis development in mouse lung tissue exposed to carbon nanotubes

Zhernovkov, V.; Santra, T.; Cassidy, H.; Rukhlenko, O.; Matallanas, D.; Krstic, A.; Kolch, W.; Lobaskin, V.; Kholodenko, B. N.

10.1101/363762 — pharmacology and toxicology — Posted on 2018-07-12

1485 A hybrid de novo genome assembly of the honeybee, Apis mellifera, with chromosome-length scaffolds

Wallberg, A.; Bunikis, I.; Vinnere Pettersson, O.; Mosbech, M.-B.; Childers, A. K.; Evans, J. D.; Mikheyev, A. S.; Robertson, H. M.; Robinson, G. E.; Webster, M. T.

10.1101/361469 — genomics — Posted on 2018-07-12

1486 MVSE: an R-package that estimates a climate-driven mosquito-borne viral suitability index.

Obolski, U.; Perez, P. N.; Villabona-Arenas, C. J.; Faria, N. R.; Lourenco, J.

10.1101/360701 — epidemiology — Posted on 2018-07-12

1487 meaRtools: an R Package for the Analysis of Neuronal Networks Recorded on Microelectrode Arrays

Gelfman, S.; Wang, Q.; Lu, Y.-F.; Hall, D.; Bostick, C.; Dhindsa, R.; Halvorsen, M.; McSweeney, K. M.; Cotterill, E.; Edinburgh, T.; Beaumont, M. A.; Frankel, W. N.; Petrovski, S.; Allen, A. S.; Boland, M. J.; Goldstein, D. B.; Eglen, S. J.

10.1101/242065 — neuroscience — Posted on 2018-07-12

1488 Influence of deterministic and stochastic processes on microbial community assembly during aerobic granulation

Liebana, R.; Modin, O.; Persson, F.; Szabo, E.; Hermansson, M.; Wilen, B.-M.

10.1101/356303 — microbiology — Posted on 2018-07-12

1489 Probabilistic variable-length segmentation of protein sequences for discriminative motif mining (DiMotif) and sequence embedding (ProtVecX)

Asgari, E.; McHardy, A.; Mofrad, M. R. K.

10.1101/345843 — bioinformatics — Posted on 2018-07-12

1490 An Indexing Theory for Working Memory based on Fast Hebbian Plasticity

Fiebig, F.; Herman, P.; Lansner, A.

10.1101/334821 — neuroscience — Posted on 2018-07-12

1491 Developing NMR methods for macromolecular machines: Measurement of residual dipolar couplings to probe dynamic regions of the ribosome

Wang, X.; Kirkpatrick, J. P.; Launay, H. M. M.; de Simone, A.; Häussinger, D.; Dobson, C. M.; Vendruscolo, M.; Cabrita, L. D.; Waudby, C.; Christodoulou, J.

10.1101/319251 — biophysics — Posted on 2018-07-12

1492 Evaluation of Methods for Cell Nuclear Structure Analysis from Microscopy Data

Kalinin, A. A.; Athey, B. D.; Dinov, I. D.

10.1101/254219 — bioinformatics — Posted on 2018-07-12

1493 Association mapping identified novel candidate loci affecting wood formation in Norway spruce

Baison, J.; Vidalis, A.; Zhou, L.; Chen, Z.-Q.; Li, Z.; Sillanpää, M. J.; Bernahrdsson, C.; Scofield, D. G.; Forsberg, N.; Olsson, L.; Karlsson, B.; Wu, H.; Ingvarsson, P. K.; Lundqvist, S.-O.; Niittylä, T.; Garcia Gil, R. M.

10.1101/292847 — genetics — Posted on 2018-07-12

1494 Coordinated cerebellar climbing fiber activity signals learned sensorimotor predictions

Heffley, W.; Song, E. Y.; Xu, Z.; Taylor, B.; Hughes, M. A.; McKinney, A.; Joshua, M.; Hull, C.

10.1101/281055 — neuroscience — Posted on 2018-07-12

1495 Immuno-genomic Pan-cancer Landscape Reveals Diverse Immune Escape Mechanisms and Immuno-Editing Histories

Mizuno, S.; Yamaguchi, R.; Hasegawa, T.; Hayashi, S.; Fujita, M.; Zhang, F.; Koh, Y.; Lee, S.-Y.; Yoon, S.-S.; Shimizu, E.; Komura, M.; Fujimoto, A.; Nagai, M.; Kato, M.; Liang, H.; Miyano, S.; Zhang, Z.; Nakagawa, H.; Imoto, S.

10.1101/285338 — genomics — Posted on 2018-07-12

1496 Decomposing the subclonal structure of tumors with two-way mixture models on copy number aberrations

Tai, A.-S.; Peng, C.-H.; Hsieh, W.-P.

10.1101/278887 — bioinformatics — Posted on 2018-07-12

1497 Offline coil position denoising enhances detection of TMS effects

Claudino, L.; Hussain, S. J.; Buch, E. R.; Cohen, L. G.

10.1101/256081 — neuroscience — Posted on 2018-07-12

1498 Intrinsic equivalence between developmental prosopagnosia questionnaires

Matsuyoshi, D.; Watanabe, K.

10.1101/267351 — neuroscience — Posted on 2018-07-12

1499 Posttranscriptional regulation of intestinal epithelial cell repair by RNA binding protein IMP1

Chatterji, P.; Whelan, K. A.; Andres, S. F.; Samper, F. C.; Simon, L. A.; Mizuno, R.; Lundsmith, E. T.; Lee, D. S. M.; Liang, S.; Wijeratne, H. R. S.; Marti, S.; Chau, L.; Williams, P. A.; Giroux, V.; Wilkins, B. J.; Wu, G. D.; Shah, P.; Tartaglia, G. G.; Hamilton, K. E.

10.1101/368050 — physiology — Posted on 2018-07-12

1500 Basal forebrain and brainstem cholinergic neurons differentially impact amygdala circuits and learning-related behavior

Aitta-aho, T.; Hay, Y. A.; Phillips, B. U.; Saksida, L. M.; Bussey, T. J.; Paulsen, O.; Apergis-Schoute, J.

10.1101/368134 — neuroscience — Posted on 2018-07-12

1501 miR-263b controls circadian rhythms and structural plasticity of small ventral lateral neurons by inhibition of Beadex

Nian, X.; Chen, W.; Bai, W.; Zhao, Z.; Zhang, Y.

10.1101/368043 — neuroscience — Posted on 2018-07-12

1502 Cell-type specific visualization and biochemical isolation of endogenous synaptic proteins in mice

Zhu, F.; Collins, M. O.; Harmse, J.; Choudhary, J. S.; Grant, S. G. N.; Komiyama, N. H.

10.1101/363614 — neuroscience — Posted on 2018-07-12

1503 Dynamic Distribution Decomposition for Single-Cell Snapshot Time Series Identifies Subpopulations and Trajectories during iPSC Differentiation

Taylor-King, J.; Riseth, A.; Claassen, M.

10.1101/367789 — systems biology — Posted on 2018-07-12

1504 Towards fast and reliable simultaneous EEG-fMRI analysis of epilepsy with automatic spike detection

Omidvarnia, A.; Kowalczyk, M.; Pedersen, M.; Jackson, G.

10.1101/361113 — neuroscience — Posted on 2018-07-12

1505 Interocular Symmetry and Repeatability of Foveal Outer Nuclear Layer Thickness in Congenital Achromatopsia

Mastey, R.; Litts, K. M.; Langlo, C. S.; Patterson, E. J.; Strampe, M. R.; Carroll, J.

10.1101/367813 — neuroscience — Posted on 2018-07-12

1506 Functionally redundant forms of extended-spectrum beta-lactamases and aminoglycoside modifying enzymes drive the evolution of two distinct multidrug resistance gene clusters in clinical populations of EXPEC

Kim, J. W.; Mira, P.; Chan, P. P.; Lowe, T. M.; Barlow, M.; Camps, M.

10.1101/367938 — microbiology — Posted on 2018-07-12

1507 Model-based analysis of positive selection significantly expands the list of cancer driver genes, including RNA methyltransferases

Zhao, S.; Liu, J.; Nanga, P.; Liu, Y.; Cicek, E.; Knoblauch, N.; He, C.; Stephens, M.; He, X.

10.1101/366823 — genomics — Posted on 2018-07-12

1508 A hybrid de novo genome assembly of the honeybee, Apis mellifera, with chromosome-length scaffolds

Wallberg, A.; Bunikis, I.; Vinnere Pettersson, O.; Mosbech, M.-B.; Childers, A. K.; Evans, J. D.; Mikheyev, A. S.; Robertson, H. M.; Robinson, G. E.; Webster, M. T.

10.1101/361469 — genomics — Posted on 2018-07-12

1509 Listeria monocytogenes cell-to-cell spread in epithelia is heterogeneous and dominated by rare pioneer bacteria

Ortega, F. E.; Koslover, E. F.; Theriot, J. A.

10.1101/367797 — microbiology — Posted on 2018-07-12

1510 Neuroglial Remodeling After Various Ocular Injuries is Regulated by Microglia

Paschalis, E. I.; Lei, D.; Zhou, C.; Chen, X.; Kapoulea, V.; Dana, R.; Chodosh, J.; Vavvas, D.; Dohlman, C. H.

10.1101/366310 — immunology — Posted on 2018-07-12

1511 The draft genome sequence of mandrill (Mandrillus sphinx)

Yin, Y.; Yang, T.; Liu, H.; Huang, Z.; Zhang, Y.; Song, Y.; Wang, W.; Kristiansen, K.

10.1101/367870 — genomics — Posted on 2018-07-12

1512 Mitochondrial genetics of exceptional longevity in multigeneration matrilineages

Kerber, R. A.; O'Brien, E.; Munger, R.; Smith, K. R.; Cawthon, R. M.

10.1101/361899 — genetics — Posted on 2018-07-12

1513 High-frequency temperature variability mirrors fixed differences in thermal limits of the massive coral Porites lobata (Dana, 1846)

Barshis, D. J.; Birkeland, C.; Toonen, R. J.; Gates, R. D.; Stillman, J. H.

10.1101/367763 — evolutionary biology — Posted on 2018-07-12

1514 Comprehensive analysis of potential immunotherapy genomic biomarkers in 1,000 Chinese patients with cancer

Jiao, S.; Zang, Y.; Dai, C.; Xu, X.; Cai, X.; Wang, G.; Wei, J.; Wu, B.; Sun, W.; Xu, Q.

10.1101/366062 — cancer biology — Posted on 2018-07-12

1515 An Efficient Strategy to Estimate Thermodynamics and Kinetics of G Protein-Coupled Receptor Activation Using Metadynamics and Maximum Caliber.

Meral, D.; Provasi, D.; Filizola, M.

10.1101/367888 — biophysics — Posted on 2018-07-12

1516 Hydrogen sulfide promotes nodulation and nitrogen fixation in soybean-rhizobia symbiotic system

Zou, H.; Zhang, N.-N.; Pan, Q.; Zhang, J.-H.; Chen, J.; Wei, G.-H.

10.1101/367896 — plant biology — Posted on 2018-07-12

1517 Coxiella burnetii blocks intracellular IL-17 signaling in macrophages

Clemente, T. M.; Mulye, M.; Justis, A.; Nallandhighal, S.; Tran, T. M.; Gilk, S. D.

10.1101/367920 — microbiology — Posted on 2018-07-12

1518 A macrophage-pericyte axis directs tissue restoration via Amphiregulin-induced TGFβ activation

Modak, R.; Minutti, C.; Macdonald, F.; Li, F.; Smyth, D.; Dorward, D.; Blair, N.; Husovsky, C.; Muir, A.; Dobie, R.; Maizels, R.; Kendall, T.; Griggs, D.; Kopf, M.; Henderson, N.; Zaiss, D.

10.1101/367474 — immunology — Posted on 2018-07-12

1519 DNA Methylation Network Estimation with Sparse Latent Gaussian Graphical Model

Ng, B.; Jafarzadeh, S.; Cole, D.; Goldenberg, A.; Mostafavi, S.

10.1101/367748 — genomics — Posted on 2018-07-12

1520 Application of clinical genomic sequencing among Chinese advanced cancer patients to guide precision medicine decisions

Jiao, S.; Bai, Y.; Dai, C.; Xu, X.; Cai, X.; Wang, G.; Wei, J.; Wu, B.; Sun, W.; Xu, Q.

10.1101/367854 — cancer biology — Posted on 2018-07-12

1521 Screening of candidate substrates and coupling ions of transporters by thermostability shift assays

Majd, H.; King, M. S.; Palmer, S. M.; Smith, A. C.; Elbourne, L. D.; Paulsen, I. T.; Sharples, D.; Henderson, P. J. F.; Kunji, E. R. S.

10.1101/367805 — biophysics — Posted on 2018-07-12

1522 Evidence for a potential role of miR-1908-5p and miR-3614-5p in autoimmune disease risk using genome-wide analyses

Wohlers, I.; Bertram, L.; Lill, C.

10.1101/286260 — bioinformatics — Posted on 2018-07-12

1523 OLGA: fast computation of generation probabilities of B- and T-cell receptor amino acid sequences and motifs

Sethna, Z.; Elhanati, Y.; Callan, C. G.; Mora, T.; Walczak, A. M.

10.1101/367904 — bioinformatics — Posted on 2018-07-12

1524 Gut microbiota density influences host physiology and is shaped by host and microbial factors

Contijoch, E. J.; Britton, G. J.; Yang, C.; Mogno, I.; Li, Z.; Ng, R.; Llewellyn, S. R.; Hira, S.; Johnson, C.; Rabinowitz, K. M.; Barkan, R.; Dotan, I.; Hirten, R. P.; Fu, S.-C.; Luo, Y.; Yang, N.; Luong, T.; Labrias, P. R.; Lira, S.; Peter, I.; Grinspan, A.; Clemente, J. C.; Kosoy, R.; Kim-Schulze, S.; Qin, X.; Castillo, A.; Hurley, A.; Atreja, A.; Rogers, J.; Fasihuddin, F.; Saliaj, M.; Nolan, A.; Reyes-Mercedes, P.; Rodriguez, C.; Aly, S.; Santa-Cruz, K.; Peters, L. A.; Suarez-Farinas, M.; Huang, R.; Hao, K.; Zhu, J.; Zhang, B.; Losic, B.; Irizar, H.; Song, W.-M.; Di Narzo, A.; Wang, W.; C

10.1101/277095 — microbiology — Posted on 2018-07-12

1525 LDJump: Estimating Variable Recombination Rates from Population Genetic Data

Hermann, P.; Heissl, A.; Tiemann-Boege, I.; Futschik, A.

10.1101/190876 — bioinformatics — Posted on 2018-07-12

1526 TP53 mutations as potential prognostic markers for specific cancers: Analysis of data from The Cancer Genome Atlas and the International Agency for Research on Cancer TP53 Database

Li, V. D.; Li, K. H.; Li, J. T.

10.1101/368027 — cancer biology — Posted on 2018-07-12

1527 Gap junctions set the speed and nucleation rate of stage I retinal waves

Kähne, M.; Rüdiger, S.; Kihara, A.; Lindner, B.

10.1101/368019 — neuroscience — Posted on 2018-07-12

1528 Noninvasive Vagus Nerve Stimulation Alters Neural Response and Physiological Autonomic Tone to Noxious Thermal Challenge

Lerman, I.; Davis, B.; Huang, M.; Huang, C.; Sorkin, L.; Proudfoot, J.; Zhong, E.; Kimball, D.; Rao, R.; Simon, B.; Spadoni, A.; Strigo, I.; Baker, D.; Simmons, A.

10.1101/367979 — neuroscience — Posted on 2018-07-12

1529 Prediction and final temporal errors are used for trial-to-trial motor corrections

Lopez-Moliner, J.; Vullings, C.; Madelain, L.; van Beers, R. J.

10.1101/368001 — neuroscience — Posted on 2018-07-12

1530 Zelda and the evolution of insect metamorphosis

Ventos-Alfonso, A.; Ylla, G.; Belles, X.

10.1101/368035 — evolutionary biology — Posted on 2018-07-12

1531 Dynamics of the p53 response to ionizing and ultraviolet radiation

Fedak, E.; Adler, F.; Young, E.; Abegglen, L.; Schiffman, J.

10.1101/367995 — cancer biology — Posted on 2018-07-12

1532 Hydrodynamics of transient cell-cell contact: The role of membrane permeability and active protrusion length

Liu, K.; Chu, B.; Newby, J.; Read, E.; Lowengrub, J.; Allard, J.

10.1101/367987 — biophysics — Posted on 2018-07-12

Oliynyk, R. T.

10.1101/349019 — genomics — Posted on 2018-07-11

1534 High-resolution analysis of the pneumococcal transcriptome under a wide range of infection-relevant conditions

Aprianto, R.; Slager, J.; Holsappel, S.; Veening, J.-W.

10.1101/283739 — microbiology — Posted on 2018-07-11

1535 Coherent feedforward regulation of gene expression by Caulobacter σT and GsrN during hyperosmotic stress

Tien, M. Z.; Stein, B. J.; Crosson, S.

10.1101/344820 — microbiology — Posted on 2018-07-11

1536 Regulation of cell fate in neurodevelopment and oligodendroglioma by the transcriptional repressor Capicua

Ahmad, S. T.; Rogers, A. D.; Chen, M. J.; Dixit, R.; Adnani, L.; Frankiw, L.; Lawn, S. O.; Blough, M. D.; Alshehri, M.; Wu, W.; Robbins, S. M.; Cairncross, G.; Schuurmans, C.; Chan, J.

10.1101/335984 — cancer biology — Posted on 2018-07-11

1537 A GAL80 collection to inhibit GAL4 transgenes in Drosophila olfactory sensory neurons

Eliason, J.; Afify, A.; Potter, C.; Matsumura, I.

10.1101/168468 — neuroscience — Posted on 2018-07-11

Oliynyk, R. T.

10.1101/349019 — genomics — Posted on 2018-07-11

1539 Polymorphism within the mitochondrial genome of the ctenophore, Pleurobrachia bachei, and its ongoing rapid evolution

Kohn, A. B.; Moroz, L. L.

10.1101/366880 — evolutionary biology — Posted on 2018-07-11

1540 A molecular phylogeny of bedbugs elucidates the evolution of host associations and sex-reversal of reproductive trait diversification

Roth, S.; Balvin, O.; Di Iorio, O.; Siva-Jothy, M. T.; Petr, B.; Calva, O.; Faundez, E. I.; McFadzen, M.; Lehnert, M. P.; Khan, F. A. A.; Naylor, R.; Simov, N.; Morrow, E.; Willassen, E.; Reinhardt, K.

10.1101/367425 — ecology — Posted on 2018-07-11

1541 Deep Learning Based Tumor Type Classification Using GeneExpression Data

Lyu, B.; Haque, A.

10.1101/364323 — bioinformatics — Posted on 2018-07-11

1542 Interplay between the epigenetic enzyme lysine (K)-specific demethylase 2B and Epstein-Barr virus infection.

Vargas-Ayala, R. C.; Jay, A.; Hernandez-Vargas, H.; Diederichs, A.; Robitaille, A.; Sirand, C.; Ceraolo, M. G.; Romero, M.; Cros, M. P.; Cuenin, C.; Durand, G.; Le Calvez-Kelm, F.; Mundo, L.; Maroui, M. A.; Leoncini, L.; Manet, E.; Herceg, Z.; Gruffat, H.; Accardi, R.

10.1101/367094 — microbiology — Posted on 2018-07-11

1543 Genetic data and cognitively-defined late-onset Alzheimer’s disease subgroups

Mukherjee, S.; Mez, J.; Trittschuh, E.; Saykin, A. J.; Gibbons, L. E.; Fardo, D. W.; Wessels, M.; Bauman, J.; Moore, M.; Choi, S.-E.; Gross, A. L.; Rich, J.; Louden, D. K.; Sanders, R. E.; Grabowski, T. J.; Bird, T. D.; McCurry, S. M.; Snitz, B. E.; Kamboh, M. I.; Lopez, O. L.; De Jager, P. L.; Bennett, D. A.; Keene, C. D.; Larson, E. B.; Crane, P. K.

10.1101/367615 — genetics — Posted on 2018-07-11

1544 Feasibility of Functional MRI at Ultralow Magnetic Field via Changes in Cerebral Blood Volume

Buckenmaier, K.; Pedersen, A.; SanGiorgio, P.; Scheffler, K.; Clarke, J.; Inglis, B.

10.1101/366955 — neuroscience — Posted on 2018-07-11

1545 Quality control implementation for universal characterization of DNA and RNA viruses in clinical respiratory samples using single metagenomic next-generation sequencing workflow

Bal, A.; Pichon, M.; Picard, C.; Casalegno, J.-S.; Valette, M.; Scuffenecker, I.; Billard, L.; Vallet, S.; Vilchez, G.; Cheynet, V.; Oriol, G.; Trouillet-assant, S.; Gillet, Y.; Lina, B.; Brengel-pesce, K.; Morfin-sherpa, F.; Josset, L.

10.1101/367367 — microbiology — Posted on 2018-07-11

1546 Evolutionary dynamics of specialization in herbivorous stick insects

Larose, C.; Rasmann, S.; Schwander, T.

10.1101/367706 — evolutionary biology — Posted on 2018-07-11

1547 De novo Gene Signature Identification from Single-Cell RNA-Seq with Hierarchical Poisson Factorization

Levitin, H. M.; Yuan, J.; Cheng, Y. L.; Ruiz, F. J. R.; Bush, E. C.; Bruce, J. N.; Canoll, P.; Iavarone, A.; Lasorella, A.; Blei, D. M.; Sims, P. A.

10.1101/367003 — systems biology — Posted on 2018-07-11

1548 GEESE: Metabolically driven latent space learning for gene expression data

Barsacchi, M.; Andres-Terre, H.; Lio, P.

10.1101/365643 — systems biology — Posted on 2018-07-11

1549 Adolescent Cognitive Control, Theta Oscillations, and Social Motivation

Buzzell, G. A.; Barker, T. V.; Troller-Renfree, S. V.; Bernat, E. M.; Bowers, M. E.; Morales, S.; Bowman, L. C.; Henderson, H. A.; Pine, D. S.; Fox, N. A.

10.1101/366831 — neuroscience — Posted on 2018-07-11

1550 Neurocomputational mechanisms underlying motivated seeing

Leong, Y. C.; Hughes, B. L.; Wang, Y.; Zaki, J.

10.1101/364836 — neuroscience — Posted on 2018-07-11

1551 SP1433-1438 operon of Streptococcuspneumoniae regulates metal homeostasis and cellular metabolism during zinc-stress

Burcham, L. R.; Hill, R. A.; Caulkins, R. C.; Emerson, J. P.; Nanduri, B.; Rosch, J. W.; Fitzkee, N. C.; Thornton, J. A.

10.1101/367086 — microbiology — Posted on 2018-07-11

1552 Non-canonical role of E3 ligase RIPLET in innate immunity as a co-receptor for RIG-I

Cadena, C.; Ahmad, S.; Xavier, A.; Park, J. W.; Oh, S.-W.; Fujita, T.; Hou, F.; Hur, S.

10.1101/367656 — immunology — Posted on 2018-07-11

1553 Genomic signatures of honey bee association in an acetic acid symbiont

Smith, E. A.; Newton, I. L. G.

10.1101/367490 — genomics — Posted on 2018-07-11

1554 Fooling the classifier: Ligand antagonism and adversarial examples

Rademaker, T. J.; Bengio, E.; Francois, P.

10.1101/366724 — biophysics — Posted on 2018-07-11

1555 Differential metabolic activity and discovery of therapeutic targets using summarized metabolic pathway models

Cubuk, C.; Hidalgo, M. R.; Amadoz, A.; Rian, K.; Salavert, F.; Pujana, M. A.; Mateo, F.; Herranz, C.; Carbonell Caballero, J.; Dopazo, J.

10.1101/367334 — bioinformatics — Posted on 2018-07-11

1556 A harmonized meta-knowledgebase of clinical interpretations of cancer genomic variants

Wagner, A. H.; Walsh, B.; Mayfield, G.; Tamborero, D.; Sonkin, D.; Krysiak, K.; Deu Pons, J.; Duren, R.; Gao, J.; McMurry, J.; Patterson, S.; Del Vecchio Fitz, C.; Sezerman, O. U.; Warner, J.; Rieke, D. T.; Aittokallio, T.; Cerami, E.; Ritter, D.; Schriml, L. M.; Haendel, M.; Raca, G.; Madhavan, S.; Baudis, M.; Beckmann, J. S.; Dienstmann, R.; Chakravarty, D.; Li, X. S.; Mockus, S. M.; Elemento, O.; Schultz, N.; Lopez-Bigas, N.; Lawler, M.; Goecks, J.; Griffith, M.; Griffith, O. L.; Margolin, A.

10.1101/366856 — bioinformatics — Posted on 2018-07-11

1557 A bacterial display system for effective selection of protein-biotin ligase BirA variants with novel peptide specificity

Granhoej, J.; Dimke, H.; Svenningsen, P.

10.1101/367730 — bioengineering — Posted on 2018-07-11

1558 Selective Permeability of Carboxysome Shell Pores to Anionic Molecules

Mahinthichaichan, P.; Morris, D. M.; Wang, Y.; Jensen, G. J.; Tajkhorshid, E.

10.1101/367714 — biochemistry — Posted on 2018-07-11

1559 Memory Image Completion (MIC): Establishing a task to behaviorally assess pattern completion in humans

Vieweg, P.; Riemer, M.; Berron, D.; Wolbers, T.

10.1101/366203 — animal behavior and cognition — Posted on 2018-07-11

1560 Individuals with clinically relevant autistic traits tend to have an eye for detail

Alink, A.; Charest, I.

10.1101/367532 — neuroscience — Posted on 2018-07-11

1561 Enhancing microRNA activity through increased endosomal release mediated by nigericin

Orellana, E. A.; Rangasamy, L.; Tenneti, S.; Abdelaal, A. M.; Low, P. S.; Kasinski, A. L.

10.1101/367672 — molecular biology — Posted on 2018-07-11

1562 Olive fruit fly rearing procedures affect the vertical transmission of the bacterial symbiont Candidatus Erwinia dacicola

Sacchetti, P.; Pastorelli, R.; Bigiotti, G.; Guidi, R.; Ruschioni, S.; Viti, C.; Belcari, A.

10.1101/367417 — microbiology — Posted on 2018-07-11

1563 Identification of Novel Genes and Variations Associated to Glycolytic Potential Based on Pig Model

Wu, W.; Zhang, Z.; Chao, Z.; Li, B.; Ning, C.; Jiang, A.; Dong, C.; Wei, W.; Chen, J.; Liu, H.

10.1101/367581 — genomics — Posted on 2018-07-11

1564 Identifying Lineage-specific Targets of Darwinian Selection by a Bayesian Analysis of Genomic Polymorphisms and Divergence from Multiple Species

Zhao, S.; Zhang, T.; Liu, Q.; Liu, Y.; Wu, H.; Su, B.; Shi, P.; Chen, H.

10.1101/367482 — genomics — Posted on 2018-07-11

1565 Presence of causative mutations affecting prolificacy in the Noire du Velay and Mouton Vendeen sheep breeds

Chantepie, L.; Bodin, L.; Sarry, J.; Woloszyn, F.; Ruesche, J.; Drouilhet, L.; FABRE, S.

10.1101/367383 — genetics — Posted on 2018-07-11

1566 Transitions in interaction landscapes of multidrug combinations

Kang, T.; Otsman, B.; Cruz-Loya, M.; Lozano, N. A.; Damoiseaux, R.; Savage, V. M.; Yeh, P. J.

10.1101/367664 — evolutionary biology — Posted on 2018-07-11

1567 Gut microbiome meta-analysis reveals dysbiosis is independent of body mass index in predicting risk of obesity-associated CRC

Greathouse, K. L.; White, J. R.; Padgett, R. N.; Perrotta, B. G.; Jenkins, G. D.; Chia, N.; Chen, J.

10.1101/367466 — cancer biology — Posted on 2018-07-11

1568 Triflic acid treatment enables LC-MS/MS analysis of insoluble bacterial biomass

Wang, A. Y.; Thuy-Boun, P. S.; Stupp, G. S.; Su, A. I.; Wolan, D. W.

10.1101/367599 — systems biology — Posted on 2018-07-11

1569 Does gender influence cardiovascular remodeling in C57BL/6J mice fed a high-fat, high-sucrose, high-salt diet?

Pereira-Silva, D. C.; Machado-Silva, R. P.; Castro-Pinheiro, C.; Fernandes-Santos, C.

10.1101/367524 — pathology — Posted on 2018-07-11

1570 Neurotensin and Dynorphin Bi-Directionally Modulates CeA Inhibition of oval BNST Neurons in Male Mice

Normandeau, C. P.; Torruella Suarez, M. L.; Sarret, P.; McElligott, Z.; Dumont, E. C.

10.1101/367649 — neuroscience — Posted on 2018-07-11

1571 Corticospinal neuroplasticity and sensorimotor recovery in rats treated by infusion of neurotrophin-3 into disabled forelimb muscles started 24 h after stroke

Duricki, D. A.; Drndarski, S.; Bernanos, M.; Wood, T.; Bosch, K.; Chen, Q.; Shine, H. D.; Simmonds, C.; Williams, S. C. R.; McMahon, S. B.; Begley, D. J.; Cash, D.; Moon, L. D. F.

10.1101/367573 — neuroscience — Posted on 2018-07-11

1572 Novel mutations associated with autosomal dominant congenital cataract are identified in Chinese families

Wang, Z.; Huang, C.; Sun, Y.; Lv, H.; Zhang, M.; Li, X.

10.1101/367516 — genomics — Posted on 2018-07-11

1573 The role of Aβ circRNA in Alzheimer’s disease: alternative mechanism of Aβ biogenesis from Aβ circRNA translation

Mo, D.; Cui, D.; Li, X.

10.1101/260968 — neuroscience — Posted on 2018-07-11

1574 Visual and auditory brain areas share a neural code for perceived emotion

Sievers, B.; Parkinson, C.; Kohler, P. J.; Hughes, J.; Fogelson, S. V.; Wheatley, T.

10.1101/254961 — neuroscience — Posted on 2018-07-11

1575 From proteins to polysaccharides: lifestyle and genetic evolution of Coprothermobacter proteolyticus.

Kunath, B.; Delogu, F.; Naas, A.; Arntzen, M.; Eijsink, V. G. H.; Henrissat, B.; Hvidsten, T. R.; Pope, P. B.

10.1101/280602 — microbiology — Posted on 2018-07-11

1576 6mer seed toxicity in tumor suppressive microRNAs

Gao, Q. Q.; Putzbach, W. E.; Murmann, A. E.; Chen, S.; Sarshad, A. A.; Peter, J. M.; Bartom, E. T.; Hafner, M.; Peter, M. E.

10.1101/284406 — cell biology — Posted on 2018-07-11

1577 Entropic Forces Drive Clustering and Spatial Localization of Influenza A M2 During Viral Budding

Madsen, J. J.; Grime, J. M. A.; Rossman, J. S.; Voth, G. A.

10.1101/291120 — biophysics — Posted on 2018-07-11

1578 Human Sensitivity to Perturbations Constrained by a Model of the Natural Image Manifold

Fruend, I.; Stalker, E. D.

10.1101/320531 — neuroscience — Posted on 2018-07-11

1579 Measurement of infection efficiency of a major wheat pathogen using time-resolved imaging of disease progress

Karisto, P.; Dora, S.; Mikaberidze, A.

10.1101/318204 — epidemiology — Posted on 2018-07-11

1580 Inhibitory and excitatory populations in parietal cortex are equally selective for decision outcome in both novices and experts

Najafi, F.; Elsayed, G. F.; Pnevmatikakis, E.; Cunningham, J.; Churchland, A. K.

10.1101/354340 — neuroscience — Posted on 2018-07-11

1581 Memote: A community-driven effort towards a standardized genome-scale metabolic model test suite

Lieven, C.; Beber, M. E.; Olivier, B. G.; Bergmann, F. T.; Ataman, M.; Babaei, P.; Bartell, J. A.; Blank, L. M.; Chauhan, S.; Correia, K.; Diener, C.; Dräger, A.; Ebert, B. E.; Edirisinghe, J. N.; Faria, J. P.; Feist, A.; Fengos, G.; Fleming, R. M. T.; Garcia-Jimenez, B.; Hatzimanikatis, V.; van Helvoirt, W.; Henry, C.; Hermjakob, H.; Herrgard, M. J.; Kim, H. U.; King, Z.; Koehorst, J. J.; Klamt, S.; Klipp, E.; Lakshmanan, M.; Le Novere, N.; Lee, D.-Y.; Lee, S. Y.; Lee, S.; Lewis, N. E.; Ma, H.; Machado, D.; Mahadevan, R.; Maia, P.; Mardinoglu, A.; Medlock, G. L.; Monk, J.; Nielsen, J.; Niels

10.1101/350991 — systems biology — Posted on 2018-07-11

1582 Axon-seq decodes the motor axon transcriptome and its modulation in response to ALS

Nijssen, J.; Aguila Benitez, J. C.; Hoogstraaten, R.; Kee, N.; Hedlund, E.

10.1101/321596 — neuroscience — Posted on 2018-07-11

1583 ERVcaller: Identifying and genotyping unfixed endogenous retrovirus (ERV) and other transposable element (TE) insertions using next-generation sequencing data

Chen, X.; Li, D.

10.1101/332833 — bioinformatics — Posted on 2018-07-11

1584 High-resolution genetic map and QTL analysis of growth-related traits of Hevea brasiliensis cultivated under suboptimal temperature and humidity conditions

Conson, A. R. O.; Taniguti, C. H.; Amadeu, R. R.; Andreotti, I. A. A.; de Souza, L. M.; dos Santos, L. H. B.; Rosa, J. R. B. F.; Mantello, C. C.; da Silva, C. C.; Scaloppi Junior, E. J.; Ribeiro, R. V.; Le Guen, V.; Garcia, A. A. F.; Goncalves, P. d. S.; de Souza, A. P.

10.1101/355008 — plant biology — Posted on 2018-07-11

1585 Endo-lysosomal sorting and degradation of Tau mediates glucocorticoid-driven hippocampalmalfunction

Vaz-Silva, J.; Zhu, M.; Jin, Q.; Zhuravleva, V.; Gomes, P.; Quintremil, S.; Meira, T.; Silva, J.; Dioli, C.; Soares-Cunha, C.; Daskalakis, N.; Sousa, N.; Sotiropoulos, I.; Waites, C. L.

10.1101/352724 — neuroscience — Posted on 2018-07-11

1586 Human Macrophage-Dependent Remodeling of the Basement Membrane-Interstitial Matrix Interface

Bahr, J. C.; Weiss, S. J.

10.1101/364422 — immunology — Posted on 2018-07-11

1587 Resource limitation modulates the fate of dissimilated nitrogen in a dual-pathway Actinobacterium

Vuono, D. C.; Read, R. W.; Hemp, J.; Sullivan, B. W.; Arnone, J. A.; Neveux, I.; Blank, B.; Staub, C.; Loney, E.; Miceli, D.; Winkler, M.; Chakraborty, R.; Stahl, D. A.; Grzymski, J. J.

10.1101/364331 — microbiology — Posted on 2018-07-11

1588 Regulating prospero mRNA Stability Determines When Neural Stem Cells Stop Dividing

Yang, L.; Samuels, T. J.; Arava, Y.; Robertson, F.; Järvelin, A. I.; Yang, C.-P.; Lee, T.; Ish-Horowicz, D.; Davis, I.

10.1101/135848 — developmental biology — Posted on 2018-07-11

1589 CTCF sites display cell cycle dependent dynamics in factor binding and nucleosome positioning

Oomen, M. E.; Hansen, A.; Liu, Y.; Darzacq, X.; Dekker, J.

10.1101/365866 — genomics — Posted on 2018-07-11

1590 Probabilistic variable-length segmentation of protein sequences for discriminative motif mining (DiMotif)and sequence embedding (ProtVecX)

Asgari, E.; McHardy, A.; Mofrad, M. R. K.

10.1101/345843 — bioinformatics — Posted on 2018-07-11

1591 Excretion initiates walking in the cricket Gryllus bimaculatus

Naniwa, K.; Sugimoto, Y.; Osuka, K.; Aonuma, H.

10.1101/362723 — animal behavior and cognition — Posted on 2018-07-11

1592 JNK-mediated spindle reorientation in stem cells promotes dysplasia in the aging intestine

Hu, D.; Jasper, H.

10.1101/365981 — cell biology — Posted on 2018-07-11

1593 Metabolic adaptability in metastatic breast cancer by AKR1B10-dependent balancing of glycolysis and fatty acid oxidation

van Weverwijk, A.; Koundouros, N.; Iravani, M.; Ashenden, M.; Gao, Q.; Poulogiannis, G.; Jungwirth, U.; Isacke, C.

10.1101/365528 — cancer biology — Posted on 2018-07-11

1594 Short-term aerobic training does not improve memory functioning in relapsing remitting multiple sclerosis - a randomized controlled trial

Baquet, L.; Hasselmann, H.; Patra, S.; Stellmann, J. P.; Vettorazzi, E.; Engel, A. K.; Rosenkranz, S.; Poettgen, J.; Gold, S. M.; Schulz, K. H.; Heesen, C.

10.1101/366161 — clinical trials — Posted on 2018-07-11

1595 Perinatal outcomes, maternal age, parity and fetal sex - searching for the \"optimal\" maternal age

Kankova, S.; Flegr, J.; Kuba, R.; Calda, P.

10.1101/365502 — epidemiology — Posted on 2018-07-11

1596 Exploring the effects of BCG vaccination in patients diagnosed with tuberculosis: observational study using the Enhanced Tuberculosis Surveillance system

Abbott, S.; Christensen, H.; Lalor, M. K.; Zennor, D.; Campbell, C. N.; Ramsay, M. E.; Brooks-Pollock, E.

10.1101/366476 — epidemiology — Posted on 2018-07-11

1597 Risk of bias in Cochrane systematic reviews: assessments of risk related to attrition bias are highly inconsistent

Babic, A.; Tokalic, R.; Silva Cunha, J. A.; Novak, I.; Suto, J.; Vidak, M.; Miosic, I.; Vuka, I.; Poklepovic Pericic, T.; Puljak, L.

10.1101/366658 — epidemiology — Posted on 2018-07-11

1598 Selection of an Appropriate Empiric Antibiotic Regimen in Culture-Negative Hematogenous Vertebral Osteomyelitis

Park, K.-H.; Kim, D. Y.; Lee, Y.; Lee, M. S.; Kang, K.-C.; Lee, J. H.; Park, S. Y.; Moon, C.; Chong, Y. P.; Kim, S.-H.; Lee, S.-O.; Choi, S.-H.; Kim, Y. S.; Woo, J. H.; Bae, I.-G.; Cho, O.-H.

10.1101/363549 — epidemiology — Posted on 2018-07-11

1599 Learning from Longitudinal Data in Electronic Health Record and Genetic Data to Improve Cardiovascular Event Prediction

Zhao, J.; Feng, Q.; Wu, P.; Lupu, R.; Wilke, R. A.; Wells, Q. S.; Denny, J.; Wei, W.-Q.

10.1101/366682 — epidemiology — Posted on 2018-07-11

1600 Model-based assessment of public health impact and cost-effectiveness of dengue vaccination following screening for prior exposure

Espana, G.; Yao, Y.; Anderson, K. B.; Fitzpatrick, M. C.; Smith, D. L.; Morrison, A. C.; Wilder-Smith, A.; Scott, T. W.; Perkins, A.

10.1101/367060 — epidemiology — Posted on 2018-07-11

1601 Judgments of risk of bias associated with random sequence generation in trials included in Cochrane systematic reviews are frequently erroneous

Barcot, O.; Boric, M.; Poklepovic Pericic, T.; Cavar, M.; Dosenovic, S.; Vuka, I.; Puljak, L.

10.1101/366674 — epidemiology — Posted on 2018-07-11

1602 Judgments of other bias in Cochrane systematic reviews of interventions are highly inconsistent and thus hindering use and comparability of evidence

Babic, A.; Pijuk, A.; Brazdilova, L.; Georgieva, Y.; Raposo Pereira, M. A.; Poklepovic, T.; Puljak, L.

10.1101/366591 — epidemiology — Posted on 2018-07-11

1603 Alzheimer’s disease risk SNPs show no strong effect on miRNA expression in human lymphoblastoid cell lines

Wohlers, I.; Schulz, C.; Kilpert, F.; Bertram, L.

10.1101/367318 — genetics — Posted on 2018-07-11

1604 Adaptive Phenotypic Plasticity for Life History and Less Fitness-Related Traits

Acasuso-Rivero, C.; Murren, C. J.; Schlichting, C. D.; Steiner, U. K.

10.1101/367284 — evolutionary biology — Posted on 2018-07-11

1605 Probing chemotaxis activity in Escherichia coli using fluorescent protein fusions

Roggo, C.; van der Meer, J. R.

10.1101/367110 — microbiology — Posted on 2018-07-11

1606 Acinetobacter baumannii detected on mCCDA medium in a waste stabilisation pond

Stratton, H. M.; Katouli, M.; Sheludchenko, M. S.; Padovan, A.; Roiko, A.

10.1101/367128 — microbiology — Posted on 2018-07-11

1607 Association of Facial Aging with DNA Methylation and Epigenetic Age Predictions

Marioni, R. E.; Belsky, D. W.; Deary, I. J.; Wagner, W.

10.1101/367326 — genetics — Posted on 2018-07-11

1608 A genetic perspective on Longobard-Era migrations

Vai, S.; Brunelli, A.; Modi, A.; Tassi, F.; Vergata, C.; Pilli, E.; Lari, M.; Susca, R. R.; Giostra, C.; Pejrani Baricco, L.; Bedini, E.; Koncz, I.; Vidar, T.; Mende, B. G.; Winger, D.; Loskotova, Z.; Veeramah, K.; Geary, P.; Barbujani, G.; Caramelli, D.; Ghirotto, S.

10.1101/367201 — genetics — Posted on 2018-07-11

1609 The creation of sexual dimorphism in Drosophila gonad stem cell niches

Camara, N.; Whitworth, C.; Van Doren, M.

10.1101/367268 — developmental biology — Posted on 2018-07-11

1610 Structures and functions linked to genome-wide adaptation of human influenza A viruses

Klingen, T. R.; Loers, J.; Stanelle-Bertram, S.; Gabriel, G.; McHardy, A. C.

10.1101/367169 — bioinformatics — Posted on 2018-07-11

1611 Lineage tracing using a Cas9-deaminase barcoding system targeting endogenous L1 elements

Hwang, B.; Lee, W.; Yum, S.; Jeon, Y.; Cho, N.; Jang, G.; Bang, D.

10.1101/367177 — bioengineering — Posted on 2018-07-11

1612 Regeneration of dopaminergic neurons in adult zebrafish depends on immune system activation and differs for distinct populations

Caldwell, L. J.; Davies, N. O.; Cavone, L.; Mysiak, K. S.; Semenova, S. A.; Panula, P.; Armstrong, J. D.; Becker, C. G.; Becker, T.

10.1101/367151 — neuroscience — Posted on 2018-07-11

1613 Temporal Multiple Kernel Learning (tMKL) model for predicting resting state FC via characterizing fMRI connectivity dynamics

Surampudi, S. G.; Misra, J.; Deco, G.; Surampudi, R. B.; Sharma, A.; Roy, D.

10.1101/367276 — neuroscience — Posted on 2018-07-11

1614 The Biological Basis of Mathematical Beauty

Zeki, S.; Chen, O. Y.; Romaya, J. P.

10.1101/367185 — neuroscience — Posted on 2018-07-11

1615 acI Actinobacteria Assemble a Functional Actinorhodopsin with Natively-synthesized Retinal

Dwulit-Smith, J. R.; Hamilton, J. J.; Stevenson, D. M.; He, S.; Oyserman, B. O.; Moya-Flores, F.; Amador-Noguez, D.; McMahon, K.; Forest, K. T.

10.1101/367102 — microbiology — Posted on 2018-07-11

1616 Phenogenon: Gene to Phenotype Associations for Rare Genetic Diseases

Murphy, C.; Moghul, I.; Pontikos, N.; Phenopolis Consortium, ; UK Inherited Retinal Dystrophy Consortium, ; UCLex Consortium, ; Yu, J.

10.1101/367292 — bioinformatics — Posted on 2018-07-11

1617 Inferring Disease Risk Genes from Sequencing Data in Multiplex Pedigrees Through Sharing of Rare Variants

Bureau, A.; Begum, F.; Taub, M. A.; Hetmanski, J.; Parker, M. M.; Albacha-Hejazi, H.; Scott, A. F.; Murray, J. C.; Marazita, M. L.; Bailey-Wilson, J. E.; Beaty, T. H.; Ruczinski, I.

10.1101/285874 — genetics — Posted on 2018-07-11

1618 The evolutionary game theory of interspecific mutualism in the multi-species model

Shibasaki, S.

10.1101/335133 — evolutionary biology — Posted on 2018-07-11

1619 Metagenomic analysis with strain-level resolution reveals fine-scale variation in the human pregnancy microbiome

Goltsman, D. S. A.; Sun, C. L.; Proctor, D. M.; DiGiulio, D. B.; Robaczewska, A.; Thomas, B. C.; Shaw, G. M.; Stevenson, D. K.; Holmes, S. P.; Banfield, J. F.; Relman, D. A.

10.1101/266700 — microbiology — Posted on 2018-07-11

1620 RAD51 Enhances Zygotic Interhomolog Repair

Wilde, J. J.; Aida, T.; Wienisch, M.; Zhang, Q.; Qi, P.; Feng, G.

10.1101/263699 — molecular biology — Posted on 2018-07-11

1621 Structured illumination microscopy combined with machine learning enables the high throughput analysis and classification of virus structure

Laine, R. F.; Goodfellow, G.; Young, L. J.; Travers, J.; Carroll, D.; Dibben, O.; Bright, H.; Kaminski, C. F.

10.1101/266551 — biophysics — Posted on 2018-07-11

1622 ProGeM: A framework for the prioritisation of candidate causal genes at molecular quantitative trait loci

Stacey, D.; Fauman, E.; Ziemek, D.; Sun, B.; Harshfield, E.; Wood, A.; Butterworth, A.; Suhre, K.; Paul, D.

10.1101/230094 — bioinformatics — Posted on 2018-07-11

1623 Impacts of Recurrent Hitchhiking on Divergence and Demographic Inference in Drosophila

Lange, J. D.; Pool, J. E.

10.1101/187633 — evolutionary biology — Posted on 2018-07-11

1624 Cicada endosymbionts have tRNAs that are correctly processed despite having genomes that do not encode all of the tRNA processing machinery

Van Leuven, J. T.; Mao, M.; Bennett, G. M.; McCutcheon, J.

10.1101/365791 — evolutionary biology — Posted on 2018-07-11

1625 FAM35A co-operates with REV7 to coordinate DNA double-strand break repair pathway choice.

Orthwein, A.; Findlay, S.; Heath, J.; Luo, V.; Malina, A.; Li, Z.; Samiei, A.; Cheyou, E. S.; Karam, M.; Bagci, H.; Rahat, D.; Grapton, D.; Lavoie, E. G.; Dove, C.; Khaled, H.; Mann, K.; Klein, K. O.; Tabach, Y.; Cote, J.-F.; Marechal, A.; Morin, T.; Djerir, B.; Park, M. M.; Kuasne, H.

10.1101/365460 — cancer biology — Posted on 2018-07-11

1626 Chemical Characterization of Interacting Genes in Few Subnetworks of Alzheimer’s Disease

Sengupta, A.; Pal Choudhury, P.; Manners, H. N.; Roy, S.

10.1101/364802 — synthetic biology — Posted on 2018-07-11

1627 TnClone: high-throughput clonal analysis usingTn5-mediated library construction and de novo assembly

Hwang, B.; Heo, S.; Cho, N.; Bang, D.

10.1101/367045 — synthetic biology — Posted on 2018-07-11

1628 Addition of Degenerate Bases to DNA-based Data Storage for Increased Information Capacity

Choi, Y.; Ryu, T.; Lee, A.; Choi, H.; Lee, H.; Park, J.; Song, S.-H.; Kim, S.; Kim, H.; Park, W.; Kwon, S.

10.1101/367052 — synthetic biology — Posted on 2018-07-11

1629 Multi-stage chemical heating for instrument-free biosensing

Goertz, J. P.; Colvin, K. M.; Lippe, A. B.; Daristotle, J. L.; Kofinas, P.; White, I. M.

10.1101/367029 — bioengineering — Posted on 2018-07-11

1630 RNASeq analysis of Aedes albopictus mosquitoes during chikungunya virus infection

Vedururu, R.; Neave, M. J.; Tachedjian, M.; Gorry, P. R.; Duchemin, J.-B.; Paradkar, P. N.

10.1101/367235 — microbiology — Posted on 2018-07-11

1631 Detection of Mycobacterium leprae DNA in soil; Multiple needles in the haystack?

Tio-Coma, M.; Wijnands, T.; Pierneef, L.; Schilling, A. K.; Alam, K.; Roy, J. C.; Faber, W. R.; Menke, H.; Pieters, T.; Stevenson, K.; Richardus, J. H.; Geluk, A.

10.1101/367219 — microbiology — Posted on 2018-07-11

1632 Quantitative behavior of protein complexes in human cells

Hajkarim, M. C.; Tsiamis, V.; Käll, L.; Vandin, F.; Schwämmle, V.

10.1101/367227 — bioinformatics — Posted on 2018-07-11

1633 Single-cell and neuronal network alterations in an in vitro model of Fragile X syndrome

Moskalyuk, A.; Kooy, F. R.; Giugliano, M.

10.1101/366997 — neuroscience — Posted on 2018-07-10

1634 Stable memory and computation in randomly rewiring neural networks

Acker, D.; Paradis, S.; Miller, P.

10.1101/367011 — neuroscience — Posted on 2018-07-10

1635 The many nuanced evolutionary consequences of duplicated genes

Teufel, A. I.; Johnson, M. M.; Laurent, J. M.; Kachroo, A. H.; Marcotte, E. M.; Wilke, C. O.

10.1101/366971 — evolutionary biology — Posted on 2018-07-10

1636 cis-regulatory architecture of a short-range EGFR organizing center in the Drosophila melanogaster leg.

Newcomb, S.; Voutev, R.; Jory, A.; Delker, R. K.; Slattery, M.; Mann, R. S.

10.1101/366948 — developmental biology — Posted on 2018-07-10

1637 A transition from SoxB1 to SoxE transcription factors is essential for progression from pluripotent blastula cells to neural crest cells

Buitrago-Delgado, E.; Schock, E.; Nordin, K.; LaBonne, C.

10.1101/359752 — developmental biology — Posted on 2018-07-10

1638 Processivity, velocity and universal characteristics of nucleic acidunwinding by helicases

Chakrabarti, S.; Jarzynski, C.; Thirumalai, D.

10.1101/366914 — biophysics — Posted on 2018-07-10

1639 Infection of highly insecticide-resistant malaria vector Anopheles coluzzii with an environmentally friendly entomopathogenic bacteria Chromobacterium violaceum reduces its survival, blood feeding propensity and fecundity

Gnambani, E. J.; Bilgo, E.; Sanou, A.; Dabire, R. K.; Diabate, A.

10.1101/366484 — microbiology — Posted on 2018-07-10

1640 Interspecies interactions mediated by conductive minerals in the sediments of the ferruginous Lake La Cruz, Spain

Rotaru, A.-E.; Posth, N. R.; Loescher, C.; Miracle, M. R.; Vincente, E.; Cox, R. P.; Thompson, J.; Poulton, S. W.; Thamdrup, B.

10.1101/366542 — microbiology — Posted on 2018-07-10

1641 Towards a pragmatic use of statistics in ecology

Castilho, L.; Prado, P.

10.1101/366815 — ecology — Posted on 2018-07-10

1642 Determinants of invasive species policy: print media and agriculture determine United States invasive wild pig policy

Miller, R. S.; Opp, S. M.; Webb, C. T.

10.1101/364372 — ecology — Posted on 2018-07-10

1643 Deepbinner: Demultiplexing barcoded Oxford Nanopore reads with deep convolutional neural networks

Wick, R. R.; Judd, L. M.; Holt, K. E.

10.1101/366526 — bioinformatics — Posted on 2018-07-10

1644 Computer Assisted Localization of a Heart Arrhythmia

Vogl, C.; Peng, Z.; Seslar, S.; Aravkin, A.

10.1101/365932 — bioengineering — Posted on 2018-07-10

1645 Changes in the urinary proteome in a Patient-Derived Xenograft model

Liu, Y.; Wang, Y.; Cao, Z.; Gao, Y.

10.1101/365999 — biochemistry — Posted on 2018-07-10

1646 Penetration Assessment of Dietary Supplements and Drugs through the Blood-Brain Barrier for Potential Treatment of Parkinson ‘s disease

Chevalier, R.

10.1101/362541 — neuroscience — Posted on 2018-07-10

1647 The role of meaning in visual memory: Face-selective brain activity predicts memory for ambiguous face stimuli

Brady, T. F.; Alvarez, G. A.; Stoermer, V.

10.1101/366641 — neuroscience — Posted on 2018-07-10

1648 Expression estimation and eQTL mapping for HLA genes with a personalized pipeline

Aguiar, V. R. C.; Cesar, J. E.; Delaneau, O.; Dermitzakis, E. T.; Meyer, D.

10.1101/365957 — genomics — Posted on 2018-07-10

1649 Discontinuities in quinoa biodiversity in the dry Andes: an 18-century perspective based on allelic genotyping

Winkel, T.; Aguirre, M. G.; Arizio, C. M.; Aschero, C. A.; Babot, M. d. P.; Benoit, L.; Burgarella, C.; Costa-Tartara, S.; Dubois, M.-P.; Gay, L.; Hocsman, S.; Jullien, M.; Lopez Campeny, S. M. L.; Manifesto, M. M.; Navascues, M.; Oliszewski, N.; Pintar, E.; Zenboudji, S.; Bertero, H. D.; Joffre, R.

10.1101/366286 — ecology — Posted on 2018-07-10

1650 Deep Semantic Protein Representation for Annotation, Discovery, and Engineering

Schwartz, A. S.; Hannum, G. J.; Dwiel, Z. R.; Smoot, M. E.; Grant, A. R.; Knight, J. M.; Becker, S. A.; Eads, J. R.; LaFave, M. C.; Eavani, H.; Liu, Y.; Bansal, A. K.; Richardson, T. H.

10.1101/365965 — bioinformatics — Posted on 2018-07-10

1651 Smart bone plates can monitor fracture healing

Lin, M. C.; Hu, D.; Marmor, M.; Herfat, S. T.; Bahney, C. S.; Maharbiz, M. M.

10.1101/366039 — bioengineering — Posted on 2018-07-10

1652 Closed-Loop Control of Active Sensing Movements Regulates Sensory Slip.

Biswas, D.; Arend, L. A.; Stamper, S. A.; Vagvölgyi, B. P.; Fortune, E. S.; Cowan, N. J.

10.1101/366609 — animal behavior and cognition — Posted on 2018-07-10

1653 What is a cognitive map? Organising knowledge for flexible behaviour

Behrens, T. E. J.; Muller, T. H.; Whittington, J. C. R.; Mark, S.; Baram, A. B.; Stachenfeld, K. L.; Kurth-Nelson, Z.

10.1101/365593 — neuroscience — Posted on 2018-07-10

1654 Do we predict upcoming speech content in naturalistic environments?

Heyselaar, E.; Peeters, D.; Hagoort, P.

10.1101/366427 — neuroscience — Posted on 2018-07-10

1655 Reference Repulsion Is Not a Perceptual Illusion

Fritsche, M.; de Lange, F. P.

10.1101/366393 — neuroscience — Posted on 2018-07-10

1656 Ecological analyses of mycobacteria in showerhead biofilms and their relevance to human health

Gebert, M.; Delgado-Baquerizo, M.; Oliverio, A.; Webster, T.; Nichols, L.; Honda, J.; Chan, E.; Adjemian, J.; Dunn, R.; Fierer, N.

10.1101/366088 — microbiology — Posted on 2018-07-10

1657 The Molecular Epidemiology and Mechanisms of Antibiotic Resistance in Gram-positive Bacteria in Africa: A Systematic Review and Meta-Analysis from a One Health Perspective

Osei Sekyere, J.; Mensah, E. A.

10.1101/366807 — microbiology — Posted on 2018-07-10

1658 Extensive Myzus cerasi transcriptional changes associated with detoxification genes upon primary to secondary host alternation

Thorpe, P.; Escudero-Martinez, C.; Eves-van den Akker, S.; Bos, J.

10.1101/366450 — genomics — Posted on 2018-07-10

1659 Cancer eQTLs can be determined from heterogeneous tumor gene expression data by modeling variation in tumor purity

Geeleher, P.; Nath, A.; Wang, F.; Zhang, Z.; Barbeira, A. N.; Fessler, J.; Grossman, R. L.; Seoighe, C.; Huang, R. S.

10.1101/366922 — genomics — Posted on 2018-07-10

1660 Rheumatoid arthritis heritability is concentrated in regulatory elements with CD4+ T cell-state-specific transcription factor binding profiles

Amariuta, T.; Luo, Y.; Gazal, S.; Davenport, E. E.; van de Geijn, B.; Westra, H.-J.; Teslovich, N.; Okada, Y.; Yamamoto, K.; RACI Consortium, ; GARNET Consortium, ; Price, A.; Raychaudhuri, S.

10.1101/366864 — genetics — Posted on 2018-07-10

1661 The Genetic Landscape of Diamond-Blackfan Anemia

Ulirsch, J. C.; Verboon, J. M.; Kazerounian, S.; Guo, M. H.; Yuan, D.; Ludwig, L. S.; Handsaker, R. E.; Abdulhay, N. J.; Fiorini, C.; Genovese, G.; Lim, E. T.; Cheng, A.; Cummings, B. B.; Chao, K. R.; Beggs, A. H.; Genetti, C. A.; Sieff, C. A.; Newburger, P. E.; Niewiadomska, E.; Matysiak, M.; Vlachos, A.; Lipton, J. M.; Atsidaftos, E.; Glader, B.; Narla, A.; Gleizes, P.-E.; O'Donohue, M.-F.; Montel-Lehry, N.; Amor, D. J.; McCarroll, S. A.; O'Donnell-Luria, A. H.; Gupta, N.; Gabriel, S. B.; MacArthur, D. G.; Lander, E. S.; Lek, M.; Da Costa, L.; Nathan, D. G.; Korostelev, A. K.; Do, R.; Sank

10.1101/365890 — genetics — Posted on 2018-07-10

1662 Defining the genetic control of human blood plasma N-glycome using genome-wide association study

Sharapov, S.; Tsepilov, Y.; Klaric, L.; Mangino, M.; Thareja, G.; Simurina, M.; Dagostino, C.; Dmitrieva, J.; Vilaj, M.; Vuckovic, F.; Pavic, T.; Stambuk, J.; Trbojevic-Akmacic, I.; Kristic, J.; Simunovic, J.; Momcilovic, A.; Campbell, H.; Dunlop, M.; Farrington, S.; Pucic-Bakovic, M.; Gieger, C.; Allegri, M.; Louis, E.; Georges, M.; Suhre, K.; Spector, T.; Williams, F.; Lauc, G.; Aulchenko, Y.

10.1101/365486 — genetics — Posted on 2018-07-10

1663 Structured environments fundamentally alter dynamics and stability of ecological communities

Vallespir Lowery, N.; Ursell, T.

10.1101/366559 — ecology — Posted on 2018-07-10

1664 Diagnosis of Osteoarthritis Subtypes with Blood Biomarkers

Zhao, K.; Lin, J.; Wu, B.; Sun, G.; An, C.; Paul, E. M.; Hongwei, O.

10.1101/366047 — bioinformatics — Posted on 2018-07-10

1665 Can we obtain in vivo transmural mean hoop stress of the aortic wall without knowing patient-specific material properties and residual deformations?

Liu, M.; Liang, L.; Liu, H.; Zhang, M.; Martin, C.; Sun, W.

10.1101/366849 — bioengineering — Posted on 2018-07-10

1666 Multipurpose virtual reality environment for biomedical and health applications

Torner, J.; Skouras, S.; Gispert, J. D.; Molinuevo, J. L.; Alpiste, F.

10.1101/366302 — bioengineering — Posted on 2018-07-10

1667 Neural structure mapping in human probabilistic reward learning

Luyckx, F.; Nili, H.; Spitzer, B.; Summerfield, C.

10.1101/366757 — neuroscience — Posted on 2018-07-10

1668 Shared Song Object Detector Neurons in Drosophila Male and Female Brains Drive Divergent, Sex-Specific Behaviors

Clemens, J.; Deutsch, D.; Thiberge, S. Y.; Murthy, M.

10.1101/366765 — neuroscience — Posted on 2018-07-10

1669 Influenza A(H1N1)pdm09 M and HA segments sequences from Rio Grande do Sul, Brazil

Matias, F.; Kretzmann, N. A.; Bisognin, C.; Teixeira, K.; Trevizan, L.; Vieira, P.; Ikuta, N.; Gregianini, T. S.; Veiga, A. B. G.; d'Azevedo, P.

10.1101/347229 — microbiology — Posted on 2018-07-10

1670 Hidden in plain sight - highly abundant and diverse planktonic freshwater Chloroflexi

Mehrshad, M.; Salcher, M. M.; Okazaki, Y.; Nakano, S.-i.; Simek, K.; Andrei, A.-S.; Ghai, R.

10.1101/366732 — microbiology — Posted on 2018-07-10

1671 The expanded universe of prokaryotic Argonaute proteins

Ryazansky, S.; Kulbachinskiy, A.; Aravin, A.

10.1101/366930 — genomics — Posted on 2018-07-10

1672 A hybrid de novo genome assembly of the honeybee, Apis mellifera, with chromosome-length scaffolds

Wallberg, A.; Bunikis, I.; Vinnere Pettersson, O.; Mosbech, M.-B.; Childers, A. K.; Evans, J. D.; Mikheyev, A. S.; Robinson, G. E.; Robertson, H. M.; Webster, M. T.

10.1101/361469 — genomics — Posted on 2018-07-10

1673 SigLASSO: a LASSO approach jointly optimizing sampling likelihood and cancer mutation signatures

Li, S.; Crawford, F. W.; Gerstein, M.

10.1101/366740 — bioinformatics — Posted on 2018-07-10

1674 Estimation of in vivo constitutive parameters of the aortic wall: a machine learning approach

Liu, M.; Liang, L.; Sun, W.

10.1101/366963 — bioengineering — Posted on 2018-07-10

1675 Socially regulated estrogen in an eavesdropping brood parasite

Lynch, K.; Azieva, G.; Pellicano, A.

10.1101/366799 — animal behavior and cognition — Posted on 2018-07-10

1676 Orienting to Polarized Light at Night-Matching Lunar Skylight to Performance in a Nocturnal Beetle

Foster, J. J.; Kirwan, J. D.; el Jundi, B.; Smolka, J.; Khaldy, L.; Baird, E. J.; Byrne, M.; Nilsson, D.-E.; Johnsen, S.; Dacke, M.

10.1101/366583 — animal behavior and cognition — Posted on 2018-07-10

1677 Translational initiation factor eIF5 replaces eIF1 on the 40S ribosomal subunit to promote start-codon recognition

Llacer, J. L.; Hussain, T.; Saini, A. K.; Nanda, J. D.; Kaur, S.; Gordiyenko, Y.; Kumar, R.; Hinnebusch, A. G.; Lorsch, J. R.; Ramakrishnan, V.

10.1101/366500 — biophysics — Posted on 2018-07-10

1678 The autism-associated gene Scn2a plays an essential role in synaptic stability and learning

Spratt, P.; Ben-Shalom, R.; Keeshen, C.; Burke, K.; Clarkson, R.; Sanders, S.; Bender, K.

10.1101/366781 — neuroscience — Posted on 2018-07-10

1679 Structural differences between pri-miRNA paralogs promotes alternative Drosha cleavage and expands target repertoires

Bofill De Ros, X.; Kasprzak, W. K.; Bhandari, Y.; Fan, L.; Cavanaugh, Q.; Jiang, M.; Dai, L.; Yang, A.; Shao, T.-J.; Shapiro, B. A.; Wang, Y.-X.; Gu, S.

10.1101/366492 — molecular biology — Posted on 2018-07-10

1680 Macrophage-Dependent Trafficking and Remodeling of the Basement Membrane-Interstitial Matrix Interface

Bahr, J. C.; Weiss, S. J.

10.1101/364422 — immunology — Posted on 2018-07-10

1681 Cicada endosymbionts have tRNAs that are correctly processed despite having genomes that do not encode all of the tRNA processing machinery

Van Leuven, J. T.; Mao, M.; Bennett, G. M.; McCutcheon, J.

10.1101/365791 — evolutionary biology — Posted on 2018-07-10

1682 Intentional gestures predict complex sociality in wild chimpanzee

Roberts, A.; Roberts, S.

10.1101/365858 — animal behavior and cognition — Posted on 2018-07-10

1683 Uric acid lowering treatment alleviates perivascular carotid collar placement induced neointimal lesions in Uricase knockout mice

Lu, J.; Sun, M.-S.; Wu, X.-J.; Yuan, X.; Liu, Z.; Qu, X.-J.; Ji, X.-P.; Merriman, T.; Li, C.-G.

10.1101/366096 — physiology — Posted on 2018-07-10

1684 Phosphoregulation of Cdt1 in G2 and M phases prevents re-replication independently of Geminin

Zhou, Y.; Stone, H. M.; Oh, S.; Pozo, P. N.; Cook, J. G.

10.1101/366666 — molecular biology — Posted on 2018-07-10

1685 mRNP architecture in translating and stress conditions reveals an ordered pathway of mRNP compaction

Khong, A.; Parker, R.

10.1101/366690 — molecular biology — Posted on 2018-07-10

1686 Comprehensive analysis of potential immunotherapy genomic biomarkers in 1,000 Chinese patients with cancer

Jiao, S.; Zang, Y.; Dai, C.; Xu, X.; Cai, X.; Wang, G.; Wei, J.; Wu, B.; Sun, W.; Xu, Q.

10.1101/366062 — cancer biology — Posted on 2018-07-10

1687 Computing Signal Transduction in signaling networks modeled as Boolean Networks, Petri Nets and hypergraphs

Sordo Vieira, L.; Vera-Licona, P.

10.1101/272344 — systems biology — Posted on 2018-07-10

1688 Identification of pyroptosis inhibitors that target a reactive cysteine in gasdermin D

Hu, J. J.; Liu, X.; Zhao, J.; Xia, S.; Ruan, J.; Luo, X.; Kim, J.; Lieberman, J.; Wu, H.

10.1101/365908 — immunology — Posted on 2018-07-10

1689 Functional characterization of peroxisome biogenic proteins Pex5 and Pex7 of Drosophila

Di Cara, F.; Rachubinski, R. A.; Simmonds, A. J.

10.1101/366633 — cell biology — Posted on 2018-07-10

1690 Inversion and computational maturation of drug response using human stem cell derived cardiomyocytes in microphysiological systems

Tveito, A.; Jaeger, K. H.; Huebsch, N.; Charrez, B.; Edwards, A. G.; Wall, S.; Healy, K. E.

10.1101/366617 — biophysics — Posted on 2018-07-10

1691 Taking a Dive: Experiments in Deep Learning for Automatic Ontology-based Annotation of Scientific Literature

Manda, P.; Beasley, L.; Mohanty, S.

10.1101/365874 — bioinformatics — Posted on 2018-07-10

1692 Map segmentation, automated model-building and their application to the Cryo-EM Model Challenge

Terwilliger, T.; Adams, P. D.; Afonine, P.; Sobolev, O. V.

10.1101/310268 — biophysics — Posted on 2018-07-10

1693 Chromomycin A2 potently inhibits glucose-stimulated insulin secretion from pancreatic β cells.

Kalwat, M. A.; Hwang, I. H.; Macho, J.; Grzemska, M. G.; Yang, J. Z.; McGlynn, K.; MacMillan, J. B.; Cobb, M. H.

10.1101/337113 — cell biology — Posted on 2018-07-10

1694 Low-dose cadmium potentiates lung inflammatory response to 2009 pandemic H1N1 influenza virus in mice

Chandler, J. D.; Hu, X.; Ko, E.; Park, S.; Fernandes, J.; Lee, Y.-T.; Orr, M.; Hao, L.; Smith, M. R.; Nujahr, D.; Uppal, K.; Kang, S.-M.; Jones, D.; Go, Y.-M.

10.1101/346866 — pharmacology and toxicology — Posted on 2018-07-10

1695 Unbiased whole genomes from mammalian feces using fluorescence-activated cell sorting

Orkin, J. D.; de Manuel, M.; Krawetz, R.; del Campo, J.; Fontsere, C.; Kuderna, L. F. K.; Lizano, E.; Tang, J.; Marques-Bonet, T.; Melin, A. D.

10.1101/366112 — genomics — Posted on 2018-07-10

1696 The impacts of landscape composition, marginality, and climatic stability on the patterns of endemism of Cerrado woody plants

Vidal, J. d. D.; de Souza, A. P.; Koch, I.

10.1101/362475 — ecology — Posted on 2018-07-10

1697 An integrative systems biology and experimental approach identifies convergence of epithelial plasticity, metabolism, and autophagy to promote chemoresistance

Xu, S.; Ware, K. E.; Ding, Y.; Kim, S. Y.; Sheth, M.; Rao, S.; Chan, W.; Armstrong, A. J.; Eward, W. C.; Jolly, M. K.; Somarelli, J. A.

10.1101/365833 — cancer biology — Posted on 2018-07-10

1698 Dominance rank-associated immune gene expression is widespread, sex-specific, and a precursor to high social status in wild male baboons

Lea, A. J.; Akinyi, M. Y.; Nyakundi, R.; Mareri, P.; Nyundo, F.; Kariuki, T.; Alberts, S.; Archie, E.; Tung, J.

10.1101/366021 — evolutionary biology — Posted on 2018-07-10

1699 Transient Hsp90 suppression promotes a heritable change in protein translation

Tsvetkov, P.; Brune, Z.; Eisen, T. J.; Heinrich, S.; Newby, G. A.; Hallacli, E.; Kayatekin, C.; Pincus, D.; Lindquist, S.

10.1101/366070 — cell biology — Posted on 2018-07-10

1700 ERVcaller: Identifying and genotyping unfixed endogenous retrovirus (ERV) and other transposable element (TE) insertions using next-generation sequencing data

Chen, X.; Li, D.

10.1101/332833 — bioinformatics — Posted on 2018-07-10

1701 Home ground advantage: selection against dispersers promotes local adaptation in wild Atlantic salmon

Mobley, K. B.; Granroth-Wilding, H.; Ellmen, M.; Vaha, J.-P.; Aykanat, T.; Johnston, S. E.; Orell, P.; Erkinaro, J.; Primmer, C. R.

10.1101/311258 — evolutionary biology — Posted on 2018-07-10

1702 Rapid sex-specific evolution of age at maturity is shaped by genetic architecture in Atlantic salmon

Czorlich, Y.; Aykanat, T.; Erkinaro, J.; Orell, P.; Primmer, C. R.

10.1101/317255 — evolutionary biology — Posted on 2018-07-10

1703 Combining accurate tumour genome simulation with crowd sourcing to benchmark somatic structural variant detection

Lee, A. Y.-W.; Ewing, A. D.; Ellrott, K.; Hu, Y.; Houlahan, K. E.; Bare, J. C.; Espiritu, S. M. G.; Huang, V.; Dang, K.; Chong, Z.; Caloian, C.; Yamaguchi, T. N.; ICGC-TCGA DREAM Somatic Mutation Calling Challenge Participants, ; Kellen, M. R.; Chen, K.; Norman, T. C.; Friend, S. H.; Guinney, J.; Stolovitzky, G.; Haussler, D.; Margolin, A. A.; Stuart, J. M.; Boutros, P. C.

10.1101/224733 — bioinformatics — Posted on 2018-07-10

1704 DeepRibo: precise gene annotation of prokaryotes using deep learning and ribosome profiling data

Clauwaert, J.; Menschaert, G.; Waegeman, W.

10.1101/317180 — bioinformatics — Posted on 2018-07-10

1705 Confidence Analysis of DEER Data and its Structural Interpretation with Ensemble-Biased Metadynamics

Hustedt, E. J.; Martinelli, F.; Stein, R. A.; Faraldo-Gomez, J.; Mchaourab, H.

10.1101/299941 — biophysics — Posted on 2018-07-10

1706 Nucleotide sequence and DNaseI sensitivity are predictive of 3D chromatin architecture

Schreiber, J.; Libbrecht, M.; Bilmes, J.; Noble, W.

10.1101/103614 — bioinformatics — Posted on 2018-07-10

1707 Memote: A community-driven effort towards a standardized genome-scale metabolic model test suite

10.1101/350991 — systems biology — Posted on 2018-07-10

1708 Exacerbation of blood brain barrier dysfunction and brain injury after aneurysmal subarachnoid hemorrhage in endothelial specific S1PR1 knock out mice.

Ito, A.; Yuan, H.; Lee, Y.; Kim, G. S.; Faraco, G.; Proia, R.; Niizuma, K.; Tominaga, T.; Anrather, J.; Iadecola, C.; Kluk, M.; Sanchez, T.

10.1101/357236 — neuroscience — Posted on 2018-07-10

1709 LEAFY maintains apical stem cell activity during shoot development in the fern Ceratopteris richardii

Langdale, J.; Di Stilio, V. S.; Plackett, A. R. G.; Conway, S. J.; Hewett Hazelton, K. D.; Rabbinowitsch, E. H.

10.1101/360107 — plant biology — Posted on 2018-07-10

1710 Matrilineal Transmission of Familial Excess Longevity (mtFEL): Effects on Cause-specific Mortality in Utah, 1904-2002

O'Brien, E.; Cawthon, R. M.; Smith, K. R.; Kerber, R. A.

10.1101/361881 — epidemiology — Posted on 2018-07-10

1711 A common neural substrate for elevated PTSD symptoms and reduced pulse rate variability in combat-exposed veterans

Grupe, D. W.; Imhoff-Smith, T.; Wielgosz, J.; Nitschke, J. B.; Davidson, R. J.

10.1101/364455 — neuroscience — Posted on 2018-07-10

1712 Delayed differentiation of vaginal and uterine microbiomes in dairy cows developing postpartum endometritis

Miranda-CasoLuengo, R.; Lu, J.; Williams, E. J.; Miranda-CasoLuengo, A. A.; Carrington, S. D.; Evans, A. C. O.; Meijer, W. G.

10.1101/365346 — microbiology — Posted on 2018-07-10

1713 Subunit redundancy within the NuRD complex ensures fidelity of ES cell lineage commitment

Burgold, T.; Barber, M.; Kloet, S.; Cramard, J.; Gharbi, S.; Floyd, R.; Kinoshita, M.; Ralser, M.; Vermeulen, M.; Reynolds, N.; Dietmann, S.; Hendrich, B.

10.1101/362988 — developmental biology — Posted on 2018-07-10

1714 Robust manipulation of the behavior of Drosophila melanogaster by a fungal pathogen in the laboratory

Elya, C.; Lok, T. C.; Spencer, Q. E.; McCausland, H.; Martinez, C. C.; Eisen, M. B.

10.1101/232140 — animal behavior and cognition — Posted on 2018-07-10

1715 A quasi-integral controller for adaptation of genetic modules to variable ribosome demand

Huang, H.-H.; Qian, Y.; Del Vecchio, D.

10.1101/336271 — synthetic biology — Posted on 2018-07-10

1716 Function of BriC Peptide in the Pneumococcal Competence and Virulence Portfolio

Aggarwal, S. D.; Eutsey, R.; West-Roberts, J.; Domenech, A.; Xu, W.; Abdullah, I. T.; Mitchell, A. P.; Veening, J.-W.; Yesilkaya, H.; Hiller, N. L.

10.1101/245902 — microbiology — Posted on 2018-07-10

1717 Multivariate genotypic analyses that identify specific genotypes to characterize disease and control groups in ADNI

Beaton, D.; Rieck, J.; Alhazmi, F.; the Alzheimer's Disease Neuroimaging Initiative, ; Abdi, H.

10.1101/235945 — genomics — Posted on 2018-07-10

1718 Dead or Alive? Molecular life-dead distinction in human stool samples reveals significantly different composition of the microbial community

Perras, A.; Koskinen, K.; Mora, M.; Beck, M.; Wink, L.; Moissl-Eichinger, C.

10.1101/343194 — microbiology — Posted on 2018-07-10

1719 A Reproducible Triple-Network Neurobiology of Depressive Rumination

Pisner, D.; Shumake, J.; Beevers, C.; Schnyer, D.

10.1101/365759 — neuroscience — Posted on 2018-07-10

1720 Resource limitation modulates the fate of dissimilated nitrogen in a dual-pathway Actinobacterium

Vuono, D. C.; Read, R. W.; Hemp, J.; Sullivan, B. W.; Arnone, J. A.; Neveux, I.; Blank, B.; Staub, C.; Loney, E.; Miceli, D.; Winkler, M.; Chakraborty, R.; Stahl, D. A.; Grzymski, J. J.

10.1101/364331 — microbiology — Posted on 2018-07-10

1721 YAP/TAZ-TEAD Activity Links Mechanical Cues To Specific Cell Fate Within The Hindbrain Boundaries

Voltes, A.; Hevia, C. F.; Dingare, C.; Calzolari, S.; Terriente, J.; Norden, C.; Lecaudey, V.; Pujades, C.

10.1101/366351 — developmental biology — Posted on 2018-07-10

1722 How Mg2+ stimulates DNA repair in prokaryotic (6-4) photolyases

Lamparter, T.; Ma, H.; Käser, G.; Thoulass, K.; Krauss, N.; Gillet, N.; Elstner, M.; Holub, D.

10.1101/366252 — biochemistry — Posted on 2018-07-10

1723 QTL mapping and identification of corresponding genomic regions for black pod disease resistance to three Phytophthora species in Theobroma cacao L.

Barreto, M. A.; Rosa, J. R. B. F.; Holanda, I. S. A.; Cardoso-Silva, C. B.; Aguilar-Vildoso, C. I.; Ahnert, D.; Souza, M. M.; Correa, R. X.; Royaert, S.; Marelli, J.-P.; Santos, E. S. L.; Luz, E. D. M. N.; Garcia, A. A. F.; de Souza, A. P.

10.1101/366054 — plant biology — Posted on 2018-07-10

1724 Reconstitution of mammalian Cleavage Factor II involved in 3’ processing of mRNA precursors

Schaefer, P.; Tueting, C.; Schoenemann, L.; Kuehn, U.; Treiber, T.; Treiber, N.; Ihling, C.; Graber, A.; Keller, W.; Meister, G.; Sinz, A.; Wahle, E.

10.1101/366336 — biochemistry — Posted on 2018-07-10

1725 MicroRNA miR-7 and miR-17-92 in POMC neurons are associated with sex-specific regulation of diet-induced obesity

Sun, T.; Gao, Y.; Li, J.; Zhang, Z.; Zhang, R.; Pollock, A.

10.1101/366419 — neuroscience — Posted on 2018-07-10

1726 Multi-protein Bridging Factor 1(Mbf1), Rps3 and Asc1 prevent stalled ribosomes from frameshifting

Wang, J.; Zhou, J.; Yang, Q.; Grayhack, E.

10.1101/366344 — molecular biology — Posted on 2018-07-10

1727 In Vitro Potentiation of Carbapenems with Tannic Acid Against Carbapenemase Producing Enterobacteriaceae: Exploring Natural Products as Potential Carbapenemase Inhibitors

Somboro, A. M.; OSEI SEKYERE, J.; Amoako, D. G.; Kumalo, H. M.; Khan, R.; Bester, L. A.; Essack, S. Y.

10.1101/366104 — microbiology — Posted on 2018-07-10

1728 Evaluation of 1, 4, 7-Triazacyclononane (TACN) as a potential Metallo-B-Lactamase inhibitor in Enterobacteriaceae: Restoring the Activity of B-lactams

Somboro, A. M.; Amoako, D. G.; Osei Sekyere, J.; Kumalo, H. M.; Khan, R.; Bester, L.; Essack, S.

10.1101/366146 — microbiology — Posted on 2018-07-10

1729 Silencing of ANKRD12 circRNA induces molecular and functional changes associated with invasive phenotypes

Karedath, T.; Ahmed, I.; Al Ameri, W.; Al-Dasim, F.; Andrews, S. S.; Samuel, S.; Al Azwani, I. K.; Ali Mohamoud, Y.; Rafii, A.; Malek, J. A.

10.1101/366245 — cancer biology — Posted on 2018-07-10

1730 Selective axonal translation of prenylated Cdc42 mRNA isoform supports axon growth

Lee, S. J.; Kar, A. N.; Kawaguchi, R.; Patel, P.; Sahoo, P. K.; Aguilar, B.; Lanz, K. D.; McCain, C.; Coppola, G.; Lu, Q.; Twiss, J. L.

10.1101/366369 — neuroscience — Posted on 2018-07-10

1731 ROCK1/Drp1-mediated aberrant mitochondrial fission is crucial for dopaminergic nerve cell apoptosis

Zhang, Q.; Hu, C.; Huang, J.; Liu, W.; Lai, W.; Leng, F.; Tang, Q.; Liu, Y.; Wang, Q.; Zhou, M.; Sheng, F.; Li, G.; Zhang, R.

10.1101/366401 — neuroscience — Posted on 2018-07-10

1732 Bloodstream Infection with Extended-spectrum Beta-lactamase-producing Escherichia coli: the role of virulence genes

Hung, W.-T.; Cheng, M.-F.; Tseng, F.-C.; Chen, Y.-S.; Lee, S. S.-J.; Chang, T.-H.; Lin, H.-H.; Hung, C.-H.; Wang, J.-L.

10.1101/366187 — microbiology — Posted on 2018-07-10

1733 Asymmetric Diversification of Mating Pheromones in Fission Yeast

Seike, T.; Shimoda, C.; Niki, H.

10.1101/366260 — microbiology — Posted on 2018-07-10

1734 P2X antagonists inhibit HIV-1 productive infection and inflammatory cytokines IL-10 and IL-1β in a human tonsil explant model

Soare, A. Y.; Durham, N.; Gopal, R.; Tweel, B.; Hoffman, K. W.; Brown, J. A.; O'Brien, M.; Bhardwaj, N.; Lim, J. K.; Chen, B. K.; Swartz, T. H.

10.1101/366179 — immunology — Posted on 2018-07-10

1735 Unbiased whole genomes from mammalian feces using fluorescence-activated cell sorting

Orkin, J. D.; de Manuel, M.; Krawetz, R.; del Campo, J.; Fontsere, C.; Kuderna, L. F. K.; Lizano, E.; Tang, J.; Marques-Bonet, T.; Melin, A. D.

10.1101/366112 — genomics — Posted on 2018-07-10

1736 C. elegans Mediator 15 permits low temperature-induced longevity via regulation of lipid and protein homeostasis

Lee, D.; An, S. W. A.; Jung, Y.; Yamaoka, Y.; Ryu, Y.; Goh, G. Y. S.; Beigi, A.; Ma, D.; Ha, C. M.; Taubert, S.; Lee, Y.; Lee, S.-J. V.

10.1101/366153 — developmental biology — Posted on 2018-07-10

1737 Simvastatin mediates inhibition of exosome synthesis, localization, and secretion via multicomponent interventions.

Kulshreshtha, A.; Singh, S.; Khanna, K.; Agrawal, A.; Ghosh, B.

10.1101/366211 — cell biology — Posted on 2018-07-10

1738 Osmia bicornis is rarely an adequate regulatory surrogate species. Comparing its acute sensitivity towards multiple insecticides with regulatory Apis mellifera endpoints.

Uhl, P.; Awanbor, O.; Schulz, R. S.; Brühl, C. A.

10.1101/366237 — ecology — Posted on 2018-07-10

1739 The first genetic linkage map for Fraxinus pennsylvanica and syntenic relationships with four related species

Wu, D.; Koch, J.; Coggeshall, M.; Carlson, J. E.

10.1101/365676 — plant biology — Posted on 2018-07-09

1740 Heliaphen, an outdoor high-throughput phenotyping platform designed to integrate genetics and crop modeling

Gosseau, F.; Blanchet, N.; Vares, D.; Burger, P.; Campergue, D.; Colombet, C.; Gody, L.; Lievin, J.-F.; Mangin, B.; Tison, G.; Vincourt, P.; Casadebaig, P.; Langlade, N.

10.1101/362715 — plant biology — Posted on 2018-07-09

1741 Pulses of melanopsin-directed contrast produce highly reliable pupil responses that are insensitive to a change in background radiance

McAdams, H.; Igdaolva, A. S.; Spitschan, M.; Brainard, D. H.; Aguirre, G. K.

10.1101/365718 — neuroscience — Posted on 2018-07-09

1742 Characterising the short-term habituation of event-related evoked potentials

Mancini, F.; Pepe, A.; Bernacchia, A.; Di Stefano, G.; Mouraux, A.; Iannetti, G. D.

10.1101/153387 — neuroscience — Posted on 2018-07-09

1743 A Reproducible, Multimodal, Triple-Network Neurobiology of Depressive Rumination

Pisner, D.; Shumake, J.; Beevers, C.; Schnyer, D.

10.1101/365759 — neuroscience — Posted on 2018-07-09

1744 Changes in neuronal immunofluorescence in the C- versus N-terminal domains of hnRNP H following D1 dopamine receptor activation

Ruan, Q. T.; Yazdani, N.; Beierle, J. A.; Hixson, K. M.; Hokenson, K. E.; Apicco, D. J.; Luttik, K.; Zheng, K.; Maziuk, B. F.; Ash, P. E.; Szumlinski, K.; Russek, S.; Wolozin, B.; Bryant, C. D.

10.1101/305565 — neuroscience — Posted on 2018-07-09

1745 Differential impact of reward and punishment on functional connectivity after skill learning

Steel, A.; Silson, E. H.; Stagg, C. J.; Baker, C. I.

10.1101/243899 — neuroscience — Posted on 2018-07-09

1746 Biophysical basis of alpha rhythm disruption in Alzheimer’s disease

Sharma, R.; Nadkarni, S.

10.1101/335471 — neuroscience — Posted on 2018-07-09

1747 Neural signatures of detours, shortcuts and back-tracking during navigation

Patai, E. Z.; Javadi, A.-H.; Margois, A.; Tan, H.-R.; Kumaran, D.; Nardini, M.; Penny, W.; Duzel, E.; Dayan, P.; Spiers, H. J.

10.1101/362319 — neuroscience — Posted on 2018-07-09

1748 Activated Protein C blocks the inhibitory effect on neurite outgrowth by extracellular histones that mediates its inhibition through a retrograde YB-1 signal

Siddiq, M. M.; Hannila, S. S.; Zorina, Y.; Nikulina, E.; Rabinovich, V.; Hou, J.; Huq, R.; Richman, E. L.; Tolentino, R. E.; Tsirka, S. E.; Maze, I.; Iyengar, R.; Filbin, M. T.

10.1101/365825 — neuroscience — Posted on 2018-07-09

1749 Spatial organization of single mRNPs at different stages of the gene expression pathway

Adivarahan, S.; Livingston, N.; Nicholson, B.; Rahman, S.; Wu, B.; Rissland, O.; Zenklusen, D.

10.1101/237008 — molecular biology — Posted on 2018-07-09

1750 Personalized expression of bitter ‘taste’ receptors in human skin

Shaw, L.; Mansfield, C.; Colquitt, L.; Lin, C.; Emmetsberger, J.; Ferreira, J.; Reed, D. R.

10.1101/364901 — molecular biology — Posted on 2018-07-09

1751 Thy1 (CD90) expression is regulated by DNA methylation during adipogenesis

Flores, E. M.; Woeller, C. F.; Falsetta, M. L.; Susiarjo, M.; Phipps, R.

10.1101/365809 — molecular biology — Posted on 2018-07-09

1752 Proteolytic processing of LRP2 on RPE cells regulates BMP activity to control eye size and refractive error

Collery, R. F.; Link, B. A.

10.1101/365817 — molecular biology — Posted on 2018-07-09

1753 Yeast Genomic Screens Identify Kinesins as Potential Targets of the Pseudomonas syringae Type III Effector, HopZ1a

Lee, A. H.; Bastedo, D. P.; Lo, T.; Middleton, M. A.; Youn, J.-Y.; Kireeva, I.; Lee, J. Y.; Sharifpoor, S.; Baryshnikova, A.; Zhang, J.; Wang, P. W.; Peisajovich, S. G.; Costanzo, M.; Andrews, B. J.; Boone, C.; Desveaux, D.; Guttman, D. S.

10.1101/365692 — microbiology — Posted on 2018-07-09

1754 Genomic inversion drives small colony variant formation and increased virulence in P. aeruginosa

Irvine, S.; Bunk, B.; Bayes, H.; Spröer, C.; Connolly, J. P. R.; Six, A.; Evans, T. J.; Roe, A. J.; Overmann, J.; Walker, D.

10.1101/356386 — microbiology — Posted on 2018-07-09

1755 High degree of virulence gene diversity in Streptococcus pyogenes isolated in Central Italy

Bencardino, D.; Di Luca, M. C.; Petrelli, D.; Prenna, M.; Vitali, L. A.

10.1101/207803 — microbiology — Posted on 2018-07-09

1756 Microbial community structure and microbial networks correspond to nutrient gradients within coastal wetlands of the Laurentian Great Lakes

Horton, D. J.; Theis, K. R.; Uzarski, D. G.; Learman, D. R.

10.1101/217919 — microbiology — Posted on 2018-07-09

1757 Protection against repeated vaginal SHIV challenges by a combination of VRC01 and an anti-α4β7 antibody

Calenda, G.; Frank, I.; Arrode-Bruses, G.; Pegu, A.; Wang, K.; Arthos, J.; Cicala, C.; Grasperge, B.; Blanchard, J. L.; Maldonado, S.; Roberts, K.; Gettie, A.; Fauci, A. S.; Mascola, J. R.; Martinelli, E.

10.1101/365551 — immunology — Posted on 2018-07-09

1758 CTCF sites display cell cycle dependent dynamics in factor binding and nucleosome positioning

Oomen, M. E.; Hansen, A.; Liu, Y.; Darzacq, X.; Dekker, J.

10.1101/365866 — genomics — Posted on 2018-07-09

1759 PBMC Fixation and Processing for Chromium Single-Cell RNA Sequencing

Chen, J.; Cheung, F.; Shi, R.; Zhou, H.; Lu, W.; Stagliano, K.

10.1101/315267 — genomics — Posted on 2018-07-09

1760 Integration of phased Hi-C and molecular phenotype data to study genetic and epigenetic effects on chromatin looping

Greenwald, W. W.; Li, H.; Benaglio, P.; Jakubosky, D.; Matsui, H.; Schmitt, A.; Selvaraj, S.; D'Antonio, M.; D'Antonio-Chronowska, A.; Smith, E. N.; Frazer, K. A.

10.1101/352682 — genomics — Posted on 2018-07-09

1761 Expression reflects population structure

Brown, B. C.; Bray, N. L.; Pachter, L.

10.1101/364448 — genomics — Posted on 2018-07-09

1762 Fallen Pillars: The Past, Present, and Future Population Dynamics of a Rare, Specialist Coral-Algal Symbiosis

Chan, A.; Lewis, C. L.; Neely, K. L.; Baums, I. B.

10.1101/365650 — genetics — Posted on 2018-07-09

1763 Both rare and common genetic variants contribute to autism in the Faroe Islands

Leblond, C.; Cliquet, F.; Carton, C.; Huguet, G.; Mathieu, A.; Kergrohen, T.; Buratti, J.; Lemiere, N.; Cuisset, L.; Bienvenu, T.; Boland, A.; Deleuze, J.-F.; Stora, T.; Biskupstoe, R.; Halling, J.; Andorsdottir, G.; Billstedt, E.; Gillberg, C.; Bourgeron, T.

10.1101/363853 — genetics — Posted on 2018-07-09

1764 Genes involved in the convergent evolution of asexuality in stick insects

Parker, D. J.; Bast, J.; Jalvingh, K.; Dumas, Z.; Robinson-Rechavi, M.; Schwander, T.

10.1101/364869 — evolutionary biology — Posted on 2018-07-09

1765 Adaptive strategies of the candidate probiotic E. coli Nissle in the mammalian gut

Crook, N.; Ferreiro, A.; Gasparrini, A.; Pesesky, M.; Gibson, M.; Wang, B.; Sun, X.; Condiotte, Z.; Dobrowolski, S.; Peterson, D.; Dantas, G.

10.1101/364505 — evolutionary biology — Posted on 2018-07-09

1766 Signals of polygenic adaptation on height have been overestimated due to uncorrected population structure in genome-wide association studies

Sohail, M.; Maier, R. M.; Ganna, A.; Bloemendal, A.; Martin, A. R.; Turchin, M. C.; Chiang, C. W. K.; Hirschhorn, J. N.; Daly, M. J.; Patterson, N.; Neale, B. M.; Mathieson, I.; Reich, D.; Sunyaev, S. R.

10.1101/355057 — evolutionary biology — Posted on 2018-07-09

Ghosh, S.

10.1101/364539 — epidemiology — Posted on 2018-07-09

1768 Data-based, synthesis-driven: setting the agenda for computational ecology

Poisot, T.; Labrie, R.; Larson, E.; Rahlin, A.

10.1101/150128 — ecology — Posted on 2018-07-09

1769 Machine learning to classify animal species in camera trap images: applications in ecology

Tabak, M. A.; Norouzzadeh, M. S.; Wolfson, D. W.; Sweeney, S. J.; VerCauteren, K. C.; Snow, N. P.; Halseth, J. M.; Di Salvo, P. A.; Lewis, J. S.; White, M. D.; Teton, B.; Beasley, J. C.; Schlichting, P. E.; Boughton, R. K.; Wight, B.; Newkirk, E. S.; Ivan, J. S.; Odell, E. A.; Brook, R. K.; Lukacs, P. M.; Moeller, A. K.; Mandeville, E. G.; Clune, J.; Miller, R. S.

10.1101/346809 — ecology — Posted on 2018-07-09

1770 Single-cell transcriptome analysis during cardiogenesis reveals basis for organ level developmental anomalies

de Soysa, T. Y.; Ranade, S.; Okawa, S.; Ravichandran, S.; Huang, Y.; Salunga, H.; Schricker, A.; del Sol, A.; Gifford, C.; Srivastava, D.

10.1101/365734 — developmental biology — Posted on 2018-07-09

1771 Extreme nuclear branching in healthy epidermal cells of the Xenopus tail fin

Arbach, H. E.; Harland-Dunaway, M.; Chang, J. K.; Wills, A. E.

10.1101/364471 — cell biology — Posted on 2018-07-09

1772 Chromatin Condensation Fluctuations Rather Than Steady-State Predict Chromatin Accessibility

Auduge, N.; Padilla-Parra, S.; Tramier, M.; Borghi, N.; Coppey-Moisan, M.

10.1101/365700 — cell biology — Posted on 2018-07-09

1773 Mutant lamins cause mechanically-induced nuclear envelope rupture, DNA damage, and DNA-PK activation in muscle

Earle, A. J.; Kirby, T. J.; Fedorchak, G. R.; Isermann, P.; Patel, J.; Iruvanti, S.; Bonne, G.; Wallrath, L. L.; Lammerding, J.

10.1101/364778 — cell biology — Posted on 2018-07-09

1774 Pharmacologic activation of G protein-coupled estrogen receptor inhibits pancreatic ductal adenocarcinoma

Natale, C.; Li, J.; Dentchev, T.; Capell, B.; Seykora, J.; Stanger, B.; Ridky, T.

10.1101/365668 — cancer biology — Posted on 2018-07-09

1775 Effects of passive phospholipid flip-flop and asymmetric external fields on bilayer phase equilibria

Williamson, J. J.; Olmsted, P.

10.1101/365577 — biophysics — Posted on 2018-07-09

1776 How small-molecule inhibitors of dengue-virus infection interfere with viral membrane fusion

Chao, L. H.; Jang, J.; Johnson, A.; Nguyen, A.; Gray, N. S.; Yang, P. L.; Harrison, S. C.

10.1101/286955 — biophysics — Posted on 2018-07-09

1777 Analysis of Local Variability and Allostery in Macromolecular Assemblies using Cryo-EM and Focused Classification

Zhang, C.; Cantara, W.; Jeon, Y.; Musier-Forsyth, K.; Grigorieff, N.; Lyumkis, D.

10.1101/365940 — biophysics — Posted on 2018-07-09

1778 Functional grading of pericellular matrix surrounding chondrocytes: potential roles in signaling and fluid transport

Saadat, F.; Lagieski, M. J.; Birman, V.; Thomopoulos, S.; Genin, G. M.

10.1101/365569 — bioengineering — Posted on 2018-07-09

1779 Structural and Functional Consequences of Age-Related Isomerization in α Crystallins

Lyon, Y.; Riggs, D.; Collier, M.; Degiacomi, M.; Benesch, J.; Julian, R.

10.1101/364497 — biochemistry — Posted on 2018-07-09

1780 Phosphatidic acid inhibits SNARE priming by inducing conformational changes in Sec18 protomers

Starr, M. L.; Sparks, R. A.; Hurst, L. R.; Zhao, Z.; Arango, A.; Lihan, M.; Jenkins, J. L.; Tajkhorshid, E.; Fratti, R. A.

10.1101/365775 — biochemistry — Posted on 2018-07-09

1781 Single-cell transcriptomics characterizes cell types in the subventricular zone and uncovers molecular defects underlying impaired adult neurogenesis

Zywitza, V.; Misios, A.; Bunatyan, L.; Willnow, T. E.; Rajewsky, N.

10.1101/365619 — systems biology — Posted on 2018-07-09

1782 Joint analysis of matched tumor samples with varying tumor contents improves somatic variant calling in the absence of a germline sample

Halperin, R. F.; Liang, W. S.; Kulkarni, S.; Tassone, E. E.; Adkins, J.; Enriquez, D.; Tran, N. L.; Hank, N. C.; Newell, J.; Kodira, C.; Korn, R.; Berens, M. E.; Kim, S.; Byron, S. A.

10.1101/364943 — bioinformatics — Posted on 2018-07-09

1783 Estimating recent migration and population size surfaces

Al-Asadi, H.; Petkova, D.; Stephens, M.; Novembre, J.

10.1101/365536 — bioinformatics — Posted on 2018-07-09

1784 The Stress-Chip: A microfluidic platform for stress analysis in Caenorhabditis elegans

Banse, S. A.; Blue, B. W.; Robinson, K. J.; Jarrett, C. M.; Phillips, P. C.

10.1101/285163 — physiology — Posted on 2018-07-09

1785 Connections between freshwater carbon and nutrient cycles revealed through reconstructed population genomes

Linz, A.; He, S.; Stevens, S. L.; Anantharaman, K.; Rohwer, R. R.; Malmstrom, R.; Bertilsson, S.; McMahon, K. D.

10.1101/365627 — microbiology — Posted on 2018-07-09

1786 Optical and physical mapping with local finishing enables megabase-scale resolution of agronomically important regions in the wheat genome

Keeble-Gagnere, G.; Rigault, P.; Tibbits, J.; Pasam, R.; Hayden, M.; Forrest, K.; Frenkel, Z.; Korol, A.; Huang, E.; Cavanagh, C.; Taylor, J.; Abrouk, M.; Sharpe, A.; Konkin, D.; Sourdille, P.; Darrier, B.; Choulet, F.; Bernard, A.; Rochfort, S.; Dimech, A.; Watson-Haigh, N.; Baumann, U.; Fleury, D.; Eckermann, P.; Juhasz, A.; Boisvert, S.; Nolin, M.-A.; Dolezel, J.; Simkova, H.; Toegelova, H.; Safar, J.; Luo, M.-C.; Camara, F.; Pfeifer, M.; Isdale, D.; Nyström-Persson, J.; International Wheat Genome Sequencing Consortium, ; Koo, D.-H.; Tinning, M.; Cui, D.; Ru, Z.; Appels, R.

10.1101/363465 — genomics — Posted on 2018-07-09

1787 Autism-associated Shank3 is essential for homeostatic plasticity and neuronal circuit stability

Tatavarty, V.; Torrado Pacheco, A.; Lin, H.; Miska, N. J.; Hengen, K. B.; Wagner, F. F.; Turrigiano, G. G.

10.1101/365445 — neuroscience — Posted on 2018-07-09

1788 A novel truncating variant of GLI2 associated with Culler-Jones syndrome impairs Hedgehog signalling

Valenza, F.; Cittaro, D.; Stupka, E.; Biancolini, D.; Patricelli, M. G.; Bonanomi, D.; Lazarevic, D.

10.1101/365494 — genetics — Posted on 2018-07-09

1789 Orthogonal Representations of Reward Magnitude, Certainty, and Volatility in the Macaque Orbitofrontal Cortex

Yang, T.; Murray, E. A.

10.1101/365080 — neuroscience — Posted on 2018-07-09

1790 BCG overexpressing an endogenous STING agonist provides enhanced protection against pulmonary tuberculosis

Bishai, W. R.; Dey, R. J.; Dey, B.; Singh, A. K.; Praharaj, M.

10.1101/365411 — microbiology — Posted on 2018-07-09

1791 Molecular function limits divergent protein evolution on planetary timescales

Konate, M.; Plata, G.; Park, J.; Wang, H. H.; Vitkup, D.

10.1101/198663 — evolutionary biology — Posted on 2018-07-09

1792 Recentrifuge: robust comparative analysis and contamination removal for metagenomics

Marti, J. M.

10.1101/190934 — bioinformatics — Posted on 2018-07-09

1793 Do below-ground genotypes influence above-ground microbiomes of grafted tomato plants?

Toju, H.; Okayasu, K.; Notaguchi, M.

10.1101/365023 — plant biology — Posted on 2018-07-09

1794 Structural connectivity facilitates functional connectivity of auditory prediction error generation within a fronto-temporal network

Oestreich, L. K. L.; Randeniya, R.; Garrido, M.

10.1101/365072 — neuroscience — Posted on 2018-07-09

1795 Amyloid-β promotes neurotoxicity by Cdk5-induced p53 stabilization

Lapresa, R.; Agulla, J.; Sanchez-Moran, I.; Bolanos, J. P.; Almeida, A.

10.1101/365437 — neuroscience — Posted on 2018-07-09

1796 Circuit and cellular mechanisms facilitate the transformation from dense to sparse coding in the insect olfactory system

Betkiewicz, R. L.; Lindner, B.; Nawrot, M. P.

10.1101/240671 — neuroscience — Posted on 2018-07-09

1797 Social status alters chromatin accessibility and the gene regulatory response to glucocorticoid stimulation in rhesus macaques

Snyder-Mackler, N.; Sanz, J.; Kohn, J. N.; Voyles, T. N.; Pique-Regi, R.; Wilson, M. E.; Barreiro, L. B.; Tung, J.

10.1101/365049 — genomics — Posted on 2018-07-09

1798 Evolution of dispersal syndrome and its corresponding metabolomic changes

Tung, S.; Mishra, A.; Gogna, N.; Sadiq, M. A.; Shreenidhi, P. M.; Shree Sruti, V. R.; Dorai, K.; Dey, S.

10.1101/178715 — evolutionary biology — Posted on 2018-07-09

1799 De novo Transcriptome Analyses Provide Insights into Opsin-based Photoreception in the Lantern shark Etmopterus spinax

Delroisse, J.; Duchatelet, L.; Flammang, P.; Mallefet, J.

10.1101/364992 — evolutionary biology — Posted on 2018-07-09

1800 Sexually dimorphic recombination can facilitate the establishment of sexually antagonistic polymorphisms in guppies

Bergero, R.; Gardner, J.; Bader, B.; Yong, L.; Charlesworth, D.

10.1101/365114 — evolutionary biology — Posted on 2018-07-09

1801 Blood flow-induced Notch activation and endothelial migration enable embryonic vascular remodeling.

Weijts, B.; Gutierrez, E.; Saikin, S. K.; Ablooglu, A. J.; Traver, D.; Groisman, A.; Tkachenko, E.

10.1101/095307 — developmental biology — Posted on 2018-07-09

1802 Circadian gene Clock regulates mitochondrial morphology and functions by posttranscriptional way

Xu, L.; Lu, C.; Qian, R.; Cheng, Q.; Hua, B.; Cai, T.; Lin, J.; Yuan, G.; Yan, Z.; Li, X.; Sun, N.

10.1101/365452 — cell biology — Posted on 2018-07-09

1803 DeepStomata: Facial Recognition Technology for Automated Stomatal Aperture Measurement

Toda, Y.; Toh, S.; Bourdais, G.; Robatzek, S.; Maclean, D.; Kinoshita, T.

10.1101/365098 — bioinformatics — Posted on 2018-07-09

1804 Glutamic acid is a carrier for hydrazine during the biosyntheses of fosfazinomycin and kinamycin

Wang, K.-K. A.; Ng, T. L.; Wang, P.; Huang, Z.; Balskus, E. P.; van der Donk, W.

10.1101/365031 — biochemistry — Posted on 2018-07-09

1805 Loss of CG methylation in Marchantia polymorpha causes disorganization of cell division and reveals unique DNA methylation regulatory mechanisms of non-CG methylation.

Ikeda, Y.; Nishihama, R.; Yamaoka, S.; Arteaga-Vazquez, M. A.; Aguilar-Cruz, A.; Grimanelli, D.; Pogorelcnik, R.; Martienssen, R. A.; Yamato, K. T.; Kohchi, T.; Hirayama, T.; Mathieu, O.

10.1101/363937 — plant biology — Posted on 2018-07-09

1806 Transcriptional regulatory mechanisms of fibrosis development in mouse lung tissue exposed to carbon nanotubes

Zhernovkov, V.; Santra, T.; Cassidy, H.; Rukhlenko, O.; Matallanas, D.; Krstic, A.; Kolch, W.; Lobaskin, V.; Kholodenko, B. N.

10.1101/363762 — pharmacology and toxicology — Posted on 2018-07-09

1807 White matter connectivity disruptions in the pre-clinical continuum of psychosis: A connectome study

Oestreich, L. K. L.; Randeniya, R.; Garrido, M.

10.1101/365064 — neuroscience — Posted on 2018-07-09

1808 Bayesian Model Selection Maps for group studies using M/EEG data

Harris, C. D.; Rowe, E. G.; Randeniya, R.; Garrido, M. I.

10.1101/365056 — neuroscience — Posted on 2018-07-09

1809 A statistical note on the detection of autoassociative dynamics in hippocampal place-cell sequences

Goenner, L.; Vitay, J.; Hamker, F. H.

10.1101/365239 — neuroscience — Posted on 2018-07-09

1810 Scrublet: computational identification of cell doublets in single-cell transcriptomic data

Wolock, S. L.; Lopez, R.; Klein, A. M.

10.1101/357368 — bioinformatics — Posted on 2018-07-09

1811 A three year follow-up study of gadolinium enhanced and non-enhanced regions in multiple sclerosis lesions using a multi-compartment T2 relaxometry model

Chatterjee, S.; Commowick, O.; Afacan, O.; Combes, B.; Warfield, S. K.; Barillot, C.

10.1101/365379 — neuroscience — Posted on 2018-07-09

1812 RNAi screening identifies a new Toll from shrimp that restricts WSSV infection through activating Dorsal to induce antimicrobial peptides

Li, C.; Li, H.; Yin, B.; Wang, S.; Fu, Q.; Xiao, B.; L?, K.; He, J.

10.1101/365197 — immunology — Posted on 2018-07-09

1813 The short-sequence design of human chromosomes

Lamolle, G.; Sabia, V.; Musto, H.; Bernardi, G.

10.1101/365262 — genomics — Posted on 2018-07-09

1814 Aptamer-based biosensor for food allergen determination using graphene oxide/gold nanocomposite on a paper-assisted analytical device

Tah, A.; Corderos, J. O.; Weng, X.; Neethirajan, S.

10.1101/343368 — bioengineering — Posted on 2018-07-09

1815 Lineage tracing of Notch1-expressing cells in intestinal tumours reveals a distinct population of cancer stem cells.

Mourao, L.; Jacquemin, G.; Huyghe, M.; Nawrocki, W. J.; Menssouri, N.; Servant, N.; Fre, S.

10.1101/364349 — cancer biology — Posted on 2018-07-09

1816 A common neural substrate for elevated PTSD symptoms and reduced pulse rate variability in combat-exposed veterans

Grupe, D. W.; Imhoff-Smith, T.; Wielgosz, J.; Nitschke, J. B.; Davidson, R. J.

10.1101/364455 — neuroscience — Posted on 2018-07-09

1817 Algorithm for Reliable Detection of Beat Onsets in Cerebral Blood Flow Velocity Signals

Canac, N.; Ranjbaran, M.; O'Brien, M.; Asgari, S.; Scalzo, F.; Thorpe, S.; Jalaleddini, K.; Thibeault, C.; Wilk, S.; Hamilton, R.

10.1101/364356 — bioinformatics — Posted on 2018-07-09

1818 Conserved SQ and QS motifs in bacterial effectors suggest pathogen interplay with the ATM kinase family during infection

Sampietro, D.; Samano-Sanchez, H.; Davey, N. E.; Sharan, M.; Meszaros, B.; Gibson, T. J.; Kumar, M.

10.1101/364117 — bioinformatics — Posted on 2018-07-09

1819 Long non-coding RNAs defining major subtypes of B cell precursor acute lymphoblastic leukemia

Rani James, A.; Schroeder, M. P.; Neumann, M.; Bastian, L.; Eckert, C.; Gökbuget, N.; Tanchez, J. O.; Schlee, C.; Isaakidis, K.; Schwartz, S.; Burmeister, T.; Stackelberg, A. v.; Rieger, M. A.; Göllner, S.; Horstman, M.; Schrappe, M.; Kirschner-Schwabe, R.; Brüggemann, M.; Müller-Tidow, C.; Serve, H.; Akalin, A.; Baldus, C. D.

10.1101/365429 — cancer biology — Posted on 2018-07-09

1820 RepB C-terminus mutation of an ori pRi vector affects plasmid copy number in Agrobacterium and transgene copy number in plants

Zarir, V.; Radke, S.; Nagy, E.; Russell, M. L.; Johnson, S.; Gelvin, S. B.; Gilbertson, L. A.; Ye, X.

10.1101/365320 — molecular biology — Posted on 2018-07-09

1821 Quantitative and qualitative evaluation of the impact of the G2 enhancer, bead sizes and lysing tubes on the bacterial community composition during DNA extraction from recalcitrant soil core samples based on community sequencing and qPCR

Gobbi, A.; Santini, R. G.; Filippi, E.; Ellegaard-Jensen, L.; Jacobsen, C. S.; Hansen, L.

10.1101/365395 — microbiology — Posted on 2018-07-09

1822 Delayed differentiation of vaginal and uterine microbiomes in dairy cows developing postpartum endometritis

Miranda-CasoLuengo, R.; Lu, J.; Williams, E. J.; Miranda-CasoLuengo, A. A.; Carrington, S. D.; Evans, A. C. O.; Meijer, W. G.

10.1101/365346 — microbiology — Posted on 2018-07-09

1823 Impact of acetolactate synthase inactivation on 1,3-propanediol fermentation by Klebsiella pneumoniae

Zhou, S.; Huang, Y.; Mao, X.; Li, L.; Guo, C.; Gao, Y.; Qin, Q.

10.1101/365387 — microbiology — Posted on 2018-07-09

1824 Integrative data analysis predicts YY1 as a Cis-regulator in the 3D Cell Culture Models of MCF10A at the Stiffness Level of High Mammographic Density

Cheng, Q.; Khoshdeli, M.; Zang, C.; Parvin, B.

10.1101/365403 — cancer biology — Posted on 2018-07-09

1825 Young Children Integrate Current Observations, Priors and Agent Information to Build Predictive Models of Others’ Actions

Kayhan, E.; Heil, L.; Kwisthout, J.; van Rooij, I.; Hunnius, S.; Bekkering, H.

10.1101/365361 — neuroscience — Posted on 2018-07-09

1826 A three year follow-up study of gadolinium enhanced and non-enhanced regions in multiple sclerosis lesions using a multi-compartment T2 relaxometry model

Chatterjee, S.; Commowick, O.; Afacan, O.; Combes, B.; Warfield, S. K.; Barillot, C.

10.1101/365379 — neuroscience — Posted on 2018-07-09

1827 Design, optimization and validation of genes commonly used in expression studies on DMH/AOM rat colon carcinogenesis model

Bars-Cortina, D.; Riera, A.; Gou, G.; Pinol-Felis, M. C.; Motilva, M.-J.

10.1101/365353 — cancer biology — Posted on 2018-07-09

1828 Familiarity modulates social approach toward stressed conspecifics in female rats

Rogers-Carter, M. M.; Djerdjaj, A.; Culp, A. R.; Elbaz, J. A.; Christianson, J. P.

10.1101/365312 — animal behavior and cognition — Posted on 2018-07-09

1829 Measuring Orangutan nest structure using Unmanned Aerial Vehicle (UAV) and ImageJ

Fadzly, N.; Kamaruszaman, S. A.; Abd Mutalib, A. H.; Muslim, A. M.; Atmoko, S. S. U.; Mansor, M.; Mansor, A.; Ruppert, N.; Zakaria, R.; Hashim, Z. H.; Md Sah, A. S. R.; Jamsari, F. F.

10.1101/365338 — zoology — Posted on 2018-07-09

1830 Modulation of ADARs mRNA expression in congenital heart defect patients

tariq, a.; Altaf, F.; Vesely, C.; Sheikh, A. M.; Munir, R.; Shah, S. T. A.

10.1101/365288 — molecular biology — Posted on 2018-07-09

1831 Survey of bacteria associated with western corn rootworm life stages reveals no difference between insects reared in different soils

Ludwick, D. C.; Ericsson, A. C.; Miehls, L. N.; Gregory, M. L. J.; Finke, D. L.; Coudron, T. A.; Hibbard, B. E.; Shelby, K. S.

10.1101/365296 — microbiology — Posted on 2018-07-09

1832 Elevated plasma ceramide levels in post-menopausal women

Vozella, V.; Basit, A.; Piras, F.; Realini, N.; Armirotti, A.; Bossu, P.; Assogna, F.; Sensi, S. L.; Spalletta, G.; Piomelli, D.

10.1101/365304 — biochemistry — Posted on 2018-07-09

1833 Effect of PPARGC1A Gly428Ser (rs8192678) polymorphism on athletic sports performance: A meta-analysis

Tharabenjasin, P.; Pabalan, N.; Jarjanazi, H.

10.1101/365270 — genetics — Posted on 2018-07-09

1834 Drosophila ZDHHC8 palmitoylates scribble and Ras64B and controls growth and viability

Strassburger, K.; Kang, E.; Teleman, A. A.

10.1101/365247 — molecular biology — Posted on 2018-07-09

1835 Effect of NaCl-Stressed Bt Cotton on the Feeding Behaviors and Nutritional Parameters of Helicoverpa armigera

Cui, J.-J.; Luo, J.-Y.; Zhang, S.; Zhu, X.-Z.; Ji, J.-C.; Zhang, K.-X.; Wang, C.-Y.; Zhang, L.-J.; Wang, L.; Cui, J.-J.

10.1101/365213 — ecology — Posted on 2018-07-09

1836 Analysis of head and neck carcinoma progression reveals novel and relevant stage-specific genetic changes associated with immortalisation and malignancy.

Veeramachaneni, R.; Walker, T.; de Weck, A.; Revil, T.; Badescu, D.; O'Sullivan, J.; Higgins, C.; Elliott, L.; Liloglou, T.; Risk, J. M.; Shaw, R.; Hampson, L.; Hampson, I.; Dearden, S.; Woodwards, R.; Prime, S.; Hunter, K.; Parkinson, E. K.; Ragoussis, I.; Thakker, N.

10.1101/365205 — cancer biology — Posted on 2018-07-09

1837 Inferring the presence of aflatoxin-producing Aspergillus flavus strains using RNA sequencing and electronic probes as a transcriptomic screening tool

Espindola, A.; Schneider, W. D.; Cardwell, K. F.; Carrillo, Y. D.; Hoyt, P. D.; Marek, S. M.; Melouk, H. D.; Garzon, C. D.

10.1101/365254 — bioinformatics — Posted on 2018-07-09

1838 Extensive recoding of dengue virus type 2 specifically reduces replication in primate cells without gain-of-function in Aedes aegypti mosquitoes

Stauft, C. B.; Shen, S. H.; Song, Y.; Gorbatsevych, O.; Asare, E.; Futcher, B.; Mueller, S.; Payne, A.; Brecher, M.; Kramer, L.; Wimmer, E.

10.1101/365189 — microbiology — Posted on 2018-07-09

1839 Psychosocial stress and central adiposity: A Brazilian study with users of the public health system

Freitas, F. V.; Barbosa, W.; Silva, L.; Garozi, M.; Pinheiro, J.; Borcoi, A.; Conti, C.; Arpini, J.; Paula, H.; Oliveira, M.; Archanjo, A.; Freitas, E.; Oliveira, D.; Borloti, E.; Louro, I. D.; Alvares-da-Silva, A.

10.1101/365130 — genetics — Posted on 2018-07-09

1840 Quantification of permethrin resistance and kdr alleles in Florida strains of Aedes aegypti (L.) and Aedes albopictus (Skuse)

Estep, A.; Sanscrainte, N. D.; Waits, C. M.; Bernard, S. J.; Lloyd, A. M.; Lucas, K. J.; Buckner, E. A.; Vaidyanathan, R.; Morreale, R.; Conti, L. A.; Becnel, J. J.

10.1101/365171 — genetics — Posted on 2018-07-09

1841 Retention of adults from fishing communities in an HIV vaccine preparedness study in Masaka, Uganda

Bahemuka, U. M.; Abaasa, A.; Ruzagira, E.; Lindan, C.; Price, M. A.; Kamali, A.; Fast, P.

10.1101/365148 — epidemiology — Posted on 2018-07-09

1842 Modeling Zika Virus Spread in Colombia Using Google Search Queries and Logistic Power Models

Brown, M.; Cain, C.; Whitfield, J.; Ding, E.; Del Valle, S.; Manore, C. A.

10.1101/365155 — epidemiology — Posted on 2018-07-09

1843 Alternative (backdoor) androgen production and masculinization in the human fetus

O'Shaughnessy, P. J.; Antignac, J. P.; Le Bizec, B.; Morvan, M.-L.; Svecvhnikov, K.; Soder, O.; Savchuk, I.; Monteiro, A.; Soffientini, U.; Johnston, Z.; Bellingham, M.; Hough, D.; Bhattacharya, S.; Walker, N.; Filis, P.; Fowler, P.

10.1101/365122 — physiology — Posted on 2018-07-09

1844 The Miniature-chemostat Aging Device: A new experimental platform facilitates assessment of the transcriptional and chromatin landscapes of replicatively aging yeast

Hendrickson, D. G.; Soifer, I.; Wranik, B. J.; Kim, G.; Robles, M.; Gibney, P. A.; McIsaac, R. S.

10.1101/363523 — systems biology — Posted on 2018-07-08

1845 A non-coding genetic variant maximally associated with serum urate levels is functionally linked to HNF4A-dependent PDZK1 expression

Ketharnathan, S.; Leask, M.; Boocock, J.; Phipps-Green, A.; Antony, J.; O'Sullivan, J.; Merriman, T.; Horsfield, J.

10.1101/362277 — cell biology — Posted on 2018-07-08

1846 Molecular simulations of the monovalent-ion dependent Folding Thermodynamics of RNA

Thirumalai, D.; Denesyuk, N. A.

10.1101/364935 — biophysics — Posted on 2018-07-08

1847 CancerMine: A literature-mined resource for drivers, oncogenes and tumor suppressors in cancer

Lever, J.; Zhao, E. Y.; Grewal, J.; Jones, M. R.; Jones, S. J.

10.1101/364406 — bioinformatics — Posted on 2018-07-08

1848 Substrate-assisted Enzymatic Formation of Lysinoalanine in Duramycin

An, L.; Cogan, D.; Navo, C.; Jimenez-Oses, G.; Nair, S.; van der Donk, W.

10.1101/358382 — biochemistry — Posted on 2018-07-08

1849 CNNC: Convolutional Neural Networks for Co-Expression Analysis

Yuan, Y.; Bar-Joseph, Z.

10.1101/365007 — systems biology — Posted on 2018-07-08

1850 Single-cell isoform RNA sequencing (ScISOr-Seq) across thousands of cells reveals isoforms of cerebellar cell types.

Gupta, I.; Collier, P. G.; Haase, B.; Mahfouz, A.; Joglekar, A.; Floyd, T.; Koopmans, F.; Barres, B.; Smit, A. B.; Sloan, S.; Luo, W.; Fedrigo, O.; Ross, M. E.; Tilgner, H. U.

10.1101/364950 — molecular biology — Posted on 2018-07-08

1851 Reconciling disparate estimates of viral genetic diversity during human influenza infections

Xue, K. S.; Bloom, J. D.

10.1101/364430 — evolutionary biology — Posted on 2018-07-08

1852 YBX2 Dysregulation is a Potential Cause for Late Maturation Arrest in Men with Non-Obstructive Azoospermia

Flannigan, R.; Mielnik, A.; Robinson, B. D.; Khani, F.; Bolyakov, A.; Schlegel, P. N.; Paduch, D. A.

10.1101/364968 — developmental biology — Posted on 2018-07-08

1853 Identification of Transcription Factor Binding Sites using ATAC-seq

Li, Z.; Schulz, M. H.; Zenke, M.; Gesteira Costa Filho, I.

10.1101/362863 — bioinformatics — Posted on 2018-07-08

1854 Multi-scale deep tensor factorization learns a latent representation of the human epigenome

Schreiber, J.; Durham, T. J.; Bilmes, J.; Noble, W. S.

10.1101/364976 — bioinformatics — Posted on 2018-07-08

1855 Expression reflects population structure

Brown, B. C.; Bray, N. L.; Pachter, L.

10.1101/364448 — genomics — Posted on 2018-07-08

1856 Representation Learning of Genomic Sequence Motifs with Convolutional Neural Networks

Koo, P. K.; Eddy, S. R.

10.1101/362756 — genomics — Posted on 2018-07-08

1857 Testing Causal Bidirectional Influences between Physical Activity and Depression using Mendelian Randomization

Choi, K.; Chen, C.-Y.; Stein, M.; Klimentidis, Y.; Wang, M.-J.; Major Depressive Disorder Working Group of the Psychiatric Genomics Consortium, ; Koenen, K.; Smoller, J.

10.1101/364232 — genetics — Posted on 2018-07-08

1858 Scoring of pathogenic non-coding variants in Mendelian diseases through supervised learning on ancient, recent and ongoing purifying selection signals in human

Caron, B.; Luo, Y.; Rausell, A.

10.1101/363903 — bioinformatics — Posted on 2018-07-08

1859 Fast and interpretable alternative splicing and differential gene-level expression analysis using transcriptome segmentation with Yanagi

Gunady, M. K.; Mount, S.; Corrada Bravo, H.

10.1101/364281 — bioinformatics — Posted on 2018-07-08

1860 A potential role for epigenetic processes in the acclimation response to elevated pCO2 in the model diatom Phaeodactylum tricornutum

Huang, R.; Ding, J.; Gao, K.; de Carvalho, M. H. C.; Bowler, C.; Tirichine, L.; Lin, X.

10.1101/364604 — microbiology — Posted on 2018-07-08

1861 Considerations in using recurrent neural networks to probe neural dynamics

Kao, J. C.

10.1101/364489 — neuroscience — Posted on 2018-07-08

1862 A Multiplex Droplet Digital PCR Assay for Quantification of HTLV-1c DNA Proviral Load and T-Cells from Blood and Respiratory Exudates Sampled in a Remote Setting

Yurick, D.; Khoury, G.; Clemens, B.; Loh, L.; Pham, H.; Kedzierska, K.; Einsiedel, L.; Purcell, D. F. J.

10.1101/364570 — microbiology — Posted on 2018-07-08

1863 Genome-wide characterization of the Fur regulatory network reveals a link between catechol degradation and bacillibactin metabolism in Bacillus subtilis

Pi, H.; Helmann, J. D.

10.1101/364588 — microbiology — Posted on 2018-07-08

1864 Host Enzymes Heparanase and Cathepsin L Promote Herpes Simplex Virus-2 Release from Cells

Hopkins, J.; Yadavalli, T.; Agelidis, A.; Shukla, D.

10.1101/364562 — microbiology — Posted on 2018-07-08

1865 Differential screening identifies molecules specifically inhibiting CCR5 transport to the cell surface and HIV infection

Boncompain, G.; Herit, F.; Tessier, S.; Lescure, A.; Del Nery, E.; Gestraud, P.; Staropoli, I.; Fukata, Y.; Fukata, M.; Brelot, A.; Niedergang, F.; Perez, F.

10.1101/364927 — cell biology — Posted on 2018-07-08

1866 Internal noise in contrast discrimination propagates forwards from early visual cortex

Vilidaite, G.; Marsh, E.; Baker, D.

10.1101/364612 — neuroscience — Posted on 2018-07-08

1867 Unifying Temporal Phenomena in Human Visual Cortex

Zhou, J.; Benson, N. C.; Kay, K.; Winawer, J.

10.1101/108639 — neuroscience — Posted on 2018-07-08

1868 Multiparametric Signature of Glioblastoma Differentiation Revealed by Imaging of Cellular Epigenetic Landscapes

Farhy, C.; Hariharan, S.; Ylanko, J.; van Woudenberg, L.; Cimadamore, F.; Ugarte, F.; Forsberg, C.; Huang, C.-T.; Andrews, D.; Terskikh, A.

10.1101/348888 — cancer biology — Posted on 2018-07-08

1869 DoubletDecon: Cell-State Aware Removal of Single-Cell RNA-Seq Doublets

DePasquale, E. A. K.; Schnell, D. J.; Valiente, I.; Blaxall, B. C.; Grimes, H. L.; Singh, H.; Salomonis, N.

10.1101/364810 — bioinformatics — Posted on 2018-07-08

1870 Generating Realistic Morphologies of Neurons in Rodent Hippocampus with DCGAN

Hadjiabadi, D. H.

10.1101/363481 — bioengineering — Posted on 2018-07-08

1871 Estimating DSM validity for Attention Deficit/Hyperactivity Disorder Based on Neurophysiological, Psychological, and Behavioral Correlates

Abramov, D. M.; Gomes-Junior, S.-C.; Mourao-Junior, C. A.; Pontes, A. T.; Rodrigues, C. Q. C.; Pontes, M. C.; Vieira, J.; Galhanone, P. R.; deAzevedo, L. C.; Lazarev, V. V.

10.1101/126433 — neuroscience — Posted on 2018-07-08

1872 Pseudomonas aeruginosa inhibits Rhizopus microsporus germination through sequestration of free environmental iron

Kousser, C.; Clark, C.; Voelz, K.; Hall, R. A.

10.1101/364877 — microbiology — Posted on 2018-07-08

1873 Megadomains and superloops form dynamically but are dispensable for X chromosome inactivation and gene escape

Froberg, J. E.; Pinter, S. F.; Kriz, A. J.; Jegu, T.; Lee, J. T.

10.1101/364893 — genomics — Posted on 2018-07-08

1874 Ad-Seq, a genome-wide DNA-adduct profiling assay

Harismendy, O.; Howell, S.

10.1101/364794 — genomics — Posted on 2018-07-08

1875 Adaptive strategies of the candidate probiotic E. coli Nissle in the mammalian gut

Crook, N.; Ferreiro, A.; Gasparrini, A.; Pesesky, M.; Gibson, M.; Wang, B.; Sun, X.; Condiotte, Z.; Dobrowolski, S.; Peterson, D.; Dantas, G.

10.1101/364505 — evolutionary biology — Posted on 2018-07-08

1876 Genes involved in the convergent evolution of asexuality in stick insects

Parker, D.; Bast, J.; Jalvingh, K.; Dumas, Z.; Robinson-Rechavi, M.; Schwander, T.

10.1101/364869 — evolutionary biology — Posted on 2018-07-08

1877 Non-adhesive alginate hydrogels support growth of pluripotent stem cell-derived intestinal organoids

Capeling, M. M.; Czerwinski, M.; Huang, S.; Tsai, Y.-H.; Wu, A.; Nagy, M. S.; Juliar, B.; Song, Y.; Sundaram, N.; Takayama, S.; Alsberg, E.; Helmrath, M.; Putnam, A. J.; Spence, J. R.

10.1101/364885 — developmental biology — Posted on 2018-07-08

1878 Accurate Prediction of Antibody Resistance in Clinical HIV-1 Isolates

Rawi, R.; Mall, R.; Shen, C.-H.; Doria-Rose, N. A.; Farney, S. K.; Shiakolas, A.; Zhou, J.; Chun, T.-W.; Lynch, R. M.; Mascola, J. R.; Kwong, P. D.; Chuang, G.-Y.

10.1101/364828 — bioinformatics — Posted on 2018-07-08

1879 SequencEnG: an Interactive Knowledge Base of Sequencing Techniques

Zhang, Y.; Manjunath, M.; Kim, Y.; Heintz, J.; Song, J. S.

10.1101/319079 — bioinformatics — Posted on 2018-07-08

1880 Intragenomic Conflict over Bet-Hedging

Wilkins, J. F.; Bhattacharya, T.

10.1101/364190 — evolutionary biology — Posted on 2018-07-08

1881 Structural and Functional Consequences of Age-Related Isomerization in α Crystallins

Lyon, Y.; Riggs, D.; Collier, M.; Degiacomo, M.; Benesch, J.; Julian, R.

10.1101/364497 — biochemistry — Posted on 2018-07-08

1882 Resource limitation modulates the fate of dissimilated nitrogen in a dual-pathway Actinobacterium

Vuono, D. C.; Read, R. W.; Hemp, J.; Sullivan, B. W.; Arnone, J. A.; Neveux, I.; Blank, B.; Staub, C.; Loney, E.; Miceli, D.; Winkler, M.; Chakraborty, R.; Stahl, D. A.; Grzymski, J. J.

10.1101/364331 — microbiology — Posted on 2018-07-08

1883 SosA inhibits cell division in Staphylococcus aureus in response to DNA damage

Bojer, M. S.; Wacnik, K.; Kjelgaard, P.; Gallay, C.; Bottomley, A. L.; Cohn, M. T.; Lindahl, G.; Frees, D.; Veening, J.-W.; Foster, S. J.; Ingmer, H.

10.1101/364299 — microbiology — Posted on 2018-07-08

1884 Contribution of common and rare variants to bipolar disorder susceptibility in extended pedigrees from population isolates

Sul, J. H.; Service, S. K.; Huang, A. Y.; Ramensky, V.; Hwang, S.-G.; Teshiba, T. M.; Park, Y.; Ori, A. P. S.; Zhang, Z.; Mullins, N.; Olde Loohuis, L. M.; Fears, S. C.; Araya, C.; Araya, X.; Spesny, M.; Bejarano, J.; Ramirez, M.; Castrillon, G.; Gomez-Makhinson, J.; Lopez, M. C.; Montoya, G.; Montoya, C. P.; Aldana, I.; Escobar, J. I.; Ospina-Duque, J.; Kremeyer, B.; Bedoya, G.; Ruiz-Linares, A.; Cantor, R. M.; Molina, J.; Coppola, G.; Ophoff, R. A.; Macaya, G.; Lopez-Jaramillo, C.; Reus, V.; Bearden, C.; Sabatti, C.; Freimer, N. B.

10.1101/363267 — genetics — Posted on 2018-07-08

1885 Parkinson-associated SNCA enhancer variants revealed by open chromatin in mouse dopamine neurons

McClymont, S. A.; Hook, P. W.; Soto, A. I.; Reed, X.; Law, W. D.; Kerans, S. J.; Waite, E. L.; Briceno, N. J.; Thole, J. F.; Heckman, M. G.; Diehl, N. N.; Wszolek, Z. K.; Moore, C. D.; Zhu, H.; Akiyama, J. A.; Dickel, D. E.; Visel, A.; Pennacchio, L. A.; Ross, O. A.; Beer, M. A.; McCallion, A. S.

10.1101/364257 — genetics — Posted on 2018-07-08

1886 A conserved genetic interaction between Spt6 and Set2 regulates H3K36 methylation

Gopalakrishnan, R.; Winston, F.

10.1101/364521 — genetics — Posted on 2018-07-08

1887 Dynamics of genomic change during evolutionary rescue in the seed beetle Callosobruchus maculatus

Rego, A.; Messina, F. J.; Gompert, Z.

10.1101/364158 — evolutionary biology — Posted on 2018-07-08

1888 Predation risk and resource abundance mediate foraging behaviour and intraspecific resource partitioning among consumers in dominance hierarchies

Naman, S.; Ueda, R.; Sato, T.

10.1101/364182 — ecology — Posted on 2018-07-08

1889 Curvature Dependent constraints drive remodeling of epithelia

Maechler, F.; Allier, C.; Roux, A.; Tomba, C.

10.1101/364208 — bioengineering — Posted on 2018-07-08

1890 Synchronised brood transport by ants occurs without communication

Mersch, D. P.; Eckmann, J.-P.; Crespi, A.; Keller, L.

10.1101/364273 — animal behavior and cognition — Posted on 2018-07-08

1891 Life history of the Rio Grande leopard frog (Lithobates berlandieri) in Texas

Hughes, D. F.; Meshaka, W. E.

10.1101/364141 — zoology — Posted on 2018-07-08

1892 Transgenic Zebrafish Models Reveal Distinct Molecular Mechanisms for Cataract-linked alphaA-Crystallin Mutants

Wu, S.-Y.; Zou, P.; Mishra, S.; Mchaourab, H. S.

10.1101/364125 — genetics — Posted on 2018-07-08

1893 Profiling of urine bacterial DNA to identify an oncobiome in a mouse model of bladder cancer

Forster, C. S.; Cody, J.; Banskota, N.; Stroud, C.; Hsieh, Y.-J.; Farah, D.; Lamanna, O.; Hammam, O.; Caldovic, L.; Hsieh, M. H.

10.1101/364000 — cancer biology — Posted on 2018-07-08

1894 Stochastic Variational Inference of Mixture Models inPhylogenetics

Dang, T.; Kishino, H.

10.1101/358747 — bioinformatics — Posted on 2018-07-08

1895 The immune cell landscape in kidneys of lupus nephritis patients

Arazi, A.; Rao, D. A.; Berthier, C. C.; Davidson, A.; Liu, Y.; Hoover, P. J.; Chicoine, A.; Eisenhaure, T. M.; Jonsson, A. H.; Li, S.; Lieb, D. J.; Browne, E. P.; Noma, A.; Sutherby, D.; Steelman, S.; Smilek, D. E.; Tosta, P.; Apruzzese, W.; Massarotti, E.; Dall'Era, M.; Park, M.; Kamen, D. L.; Furie, R. A.; Payan-Schober, F.; Buyon, J. P.; Petri, M. A.; Putterman, C.; Kalunian, K. C.; Woodle, E. S.; Lederer, J. A.; Hildeman, D. A.; Nusbaum, C.; Wofsy, D.; Kretzler, M.; Anolik, J. H.; Brenner, M. B.; The Accelerating Medicines Partnership in RA/SLE network, ; Hacohen, N.; Diamond, B.

10.1101/363051 — immunology — Posted on 2018-07-07

1896 Disparate expression specificities coded by a shared Hox-C enhancer

Miller, S. W.; Posakony, J. W.

10.1101/364216 — developmental biology — Posted on 2018-07-07

1897 Self-assembling Manifolds in Single-cell RNA Sequencing Data

Tarashansky, A. J.; Xue, Y.; Quake, S. R.; Wang, B.

10.1101/364166 — bioinformatics — Posted on 2018-07-07

1898 Heterogeneity of transposon expression and activation of the repressive network in human fetal germ cells

Reznik, B.; Cincotta, S. A.; Jaszczak, R. G.; Mateo, L. J.; Shen, J.; Cao, M.; Bascin, L.; Ye, P.; An, W.; Laird, D.

10.1101/364315 — developmental biology — Posted on 2018-07-07

1899 Insulin signalling activates multiple feedback loops to elicit hunger-induced feeding in Drosophila

Sudhakar, S. R.; Varghese, J.

10.1101/364554 — developmental biology — Posted on 2018-07-07

1900 The Human Kinesin Kif18A’s Neck Linker Permits Navigation of Microtubule Bound Obstacles within the Mitotic Spindle

Malaby, H. L. H.; Lessard, D. V.; Berger, C. L.; Stumpff, J.

10.1101/364380 — cell biology — Posted on 2018-07-07

1901 NHA2 promotes cyst development in an in vitro model of polycystic kidney disease

Prasad, H.; Dang, D. K.; Kondapalli, K. C.; Natarajan, N.; Cebotaru, V.; Rao, R.

10.1101/364679 — physiology — Posted on 2018-07-07

1902 Comprehensive transcriptional profiling of the gastrointestinal tract of ruminants from birth to adulthood reveals strong developmental stage specific gene expression

Bush, S. J.; McCulloch, M. E.; Muriuki, C.; Salavati, M.; Davis, G. M.; Farquhar, I. L.; Lisowski, Z. M.; Archibald, A.; Hume, D. A.; Clark, E. L.

10.1101/364752 — genomics — Posted on 2018-07-07

1903 Mushroom body specific transcriptome analysis reveals dynamic regulation of learning and memory genes after acquisition of long-term courtship memory in Drosophila

Jones, S. G.; Nixon, K. C.; Kramer, J. M.

10.1101/364745 — genomics — Posted on 2018-07-07

1904 A smartphone-based tool for rapid, portable, and automated wide-field retinal imaging

Kim, T.; Myers, F.; Reber, C.; Loury, P.; Loumou, P.; Webster, D.; Echanique, C.; Li, P.; Davila, J.; Maamari, R.; Switz, N.; Keenan, J.; Woodward, M.; Paulus, Y.; Margolis, T.; Fletcher, D.

10.1101/364265 — bioengineering — Posted on 2018-07-07

1905 Flexible resonance in prefrontal networks with strong feedback inhibition

Sherfey, J. S.; Ardid, S.; Hass, J.; Hasselmo, M. E.; Kopell, N. J.

10.1101/364729 — neuroscience — Posted on 2018-07-07

1906 Expression and role of Galectin-3 in the postnatal development of the cerebellum

Gonzalez-Calvo, I.; Selimi, F.

10.1101/364760 — neuroscience — Posted on 2018-07-07

1907 The PedS2/PedR2 two-component system is crucial for the rare earth element switch in Pseudomonas putida KT2440

Wehrmann, M.; Berthelot, C.; Billard, P.; Klebensberger, J.

10.1101/364661 — microbiology — Posted on 2018-07-07

1908 pymfinder: a tool for the motif analysis of binary and quantitative complex networks

Bramon Mora, B.; Cirtwill, A. R.; Stouffer, D. B.

10.1101/364703 — ecology — Posted on 2018-07-07

1909 Mutant lamins cause mechanically-induced nuclear envelope rupture, DNA damage, and DNA-PK activation in muscle

Earle, A. J.; Kirby, T. J.; Fedorchak, G. R.; Isermann, P.; Patel, J.; Iruvanti, S.; Bonne, G.; Wallrath, L. L.; Lammerding, J.

10.1101/364778 — cell biology — Posted on 2018-07-07

1910 Dissociable forms of uncertainty-driven representational change across the human brain.

Nassar, M. R.; McGuire, J. T.; Ritz, H.; Kable, J.

10.1101/364638 — neuroscience — Posted on 2018-07-07

1911 Metabolic diversity of bacteria and yeast from commercial probiotic products illustrated by phenotypic profiling

Ansari, J. M.; Colasacco, C.; Emmanouil, E.; Kohlhepp, S.; Harriott, O.

10.1101/364687 — microbiology — Posted on 2018-07-07

1912 A new reporter cell line for studies with proteasome inhibitors in Trypanosoma brucei

Moura, D. M.; de Melo Neto, O. P.; Carrington, M.

10.1101/364646 — microbiology — Posted on 2018-07-07

1913 Cascading regime shifts within and across scales

Rocha, J. C.; Peterson, G. D.; Bodin, O.; Levin, S. A.

10.1101/364620 — ecology — Posted on 2018-07-07

1914 Non-random associations of maternally transmitted symbionts in insects: The roles of drift versus co-transmission and selection

Mathe-Hubert, H.; Kaech, H.; Hertaeg, C.; Vorburger, C.

10.1101/364653 — ecology — Posted on 2018-07-07

1915 Two essential replicative DNA polymerases exchange dynamically during DNA replication and after replication fork arrest

Li, Y.; Chen, Z.; Matthews, L. A.; Simmons, L.; Biteen, J.

10.1101/364695 — biophysics — Posted on 2018-07-07

1916 A novel interplay between GEFs orchestrates Cdc42 activation in cell polarity and cytokinesis

Hercyk, B.; Rich, J.; Das, M. E.

10.1101/364786 — cell biology — Posted on 2018-07-07

1917 Deriving general conditions and mechanisms for division of labor using the cell-based simulator gro

Gregorio-Godoy, P.; Perez del Pulgar, G.; Rodriguez-Regueira, M.; Rodriguez-Paton, A.

10.1101/363093 — evolutionary biology — Posted on 2018-07-07

1918 Transcriptomic analysis with the progress of symbiosis in ‘crack-entry’ legume Arachis hypogaea highlights its contrast with ‘infection thread’ adapted legumes

Karmakar, K.; Kundu, A.; Rizvi, A. Z.; Dubois, E.; Severac, D.; Czernic, P.; Cartieaux, F.; DasGupta, M.

10.1101/251181 — plant biology — Posted on 2018-07-07

1919 Immuno-genomic PanCancer Landscape Reveals Diverse Immune Escape Mechanisms and Immuno-Editing Histories

10.1101/285338 — genomics — Posted on 2018-07-07

1920 Super-Mendelian inheritance mediated by CRISPR/Cas9 in the female mouse germline

Grunwald, H. A.; Gantz, V. M.; Poplawski, G.; Xu, X.-r. S.; Bier, E.; Cooper, K. L.

10.1101/362558 — genetics — Posted on 2018-07-07

1921 Characterizing protein-DNA binding event subtypes in ChIP-exo data

Yamada, N.; Lai, W. K.; Farrell, N.; Pugh, B. F.; Mahony, S.

10.1101/266536 — bioinformatics — Posted on 2018-07-07

1922 Gene body methylation is involved in coarse genome-wide adjustment of gene expression during acclimatization

Dixon, G. B.; Liao, Y.; Bay, L. K.; Matz, M. V.

10.1101/184457 — ecology — Posted on 2018-07-07

1923 Investigating the occurrence of E. coli O157:H7 in the final effluents of two wastewater treatment plants

Osuolale, O.; Okoh, A. I.

10.1101/161737 — microbiology — Posted on 2018-07-07

1924 Whole genome sequences of Malawi cichlids reveal multiple radiations interconnected by gene flow

Malinsky, M.; Svardal, H.; Tyers, A. M.; Miska, E. A.; Genner, M. J.; Turner, G. F.; Durbin, R.

10.1101/143859 — evolutionary biology — Posted on 2018-07-07

1925 PI31 is an adaptor protein for proteasome transport in axons

Liu, K.; Jones, S.; Minis, A.; Rodriguez, J.; Molina, H.; Steller, H.

10.1101/364463 — cell biology — Posted on 2018-07-07

1926 Validation of Prostate Cancer Risk Variants by CRISPR/Cas9 Mediated Genome Editing

Wang, X.; Hayes, J.; Xu, D.; Gao, X.; Mehta, D.; Lilja, H.; Klein, R.

10.1101/337022 — genetics — Posted on 2018-07-06

1927 Fast and flexible bacterial genomic epidemiology with PopPUNK

Lees, J. A.; Harris, S. R.; Tonkin-Hill, G.; Gladstone, R. A.; Lo, S.; Weiser, J. N.; Corander, J.; Bentley, S. D.; Croucher, N. J.

10.1101/360917 — genomics — Posted on 2018-07-06

1928 Changes in excitability and ion channel expression in neurons of the major pelvic ganglion in female type II diabetic mice

Gray, M.; Lett, K. M.; Garcia, V. B.; Kyi, C.; Pennington, K. A.; Schulz, L. C.; Schulz, D.

10.1101/360826 — neuroscience — Posted on 2018-07-06

1929 Neurotransmitter imbalance in the brain and Alzheimer’s pathology

Snowden, S. G.; Ebshiana, A.; Hye, A.; Yang, A.; Pletnikova, O.; O'Brien, R.; Troncoso, J.; Legido-Quigley, C.; Thambisetty, M.

10.1101/220699 — neuroscience — Posted on 2018-07-06

1930 Genome location dictates the transcriptional response to sub-inhibitory concentrations of PolC-inhibitors in Clostridium difficile

van Eijk, E.; Boekhoud, I. M.; Kuijper, E. J.; Bos-Sanders, I. M. J. G.; Wright, G.; Smits, W. K.

10.1101/362137 — microbiology — Posted on 2018-07-06

1931 Allele-specific NKX2-5 binding underlies multiple genetic associations with human EKG traits

Benaglio, P.; D'Antonio-Chronowska, A.; Greenwald, W. W.; DeBoever, C.; Li, H.; Drees, F.; Singhal, S.; Matsui, H.; D'Antonio, M.; Smith, E. N.; Frazer, K. A.

10.1101/351411 — genomics — Posted on 2018-07-06

1932 Some generic measures of the extent of chemical disequilibrium applied to living and abiotic systems

Intoy, B. F.; Halley, J. W.

10.1101/327783 — biophysics — Posted on 2018-07-06

1933 Specific histone modifications associate with alternative exon selection during mammalian development

Hu, Q.; Greene, C.; Heller, E.

10.1101/361816 — bioinformatics — Posted on 2018-07-06

1934 Multiple prebiotic metals mediate translation

Bray, M. S.; Lenz, T. K.; Bowman, J. C.; Petrov, A. S.; Reddi, A. R.; Hud, N. V.; Williams, L. D.; Glass, J. B.

10.1101/256958 — biochemistry — Posted on 2018-07-06

1935 Combining citizen science and deep learning to amplify expertise in neuroimaging

Keshavan, A.; Yeatman, J.; Rokem, A.

10.1101/363382 — neuroscience — Posted on 2018-07-06

1936 Kinetic analysis of yeast-yeast interactions in oenological conditions

Harle, O.; Legrand, J.; Tesniere, C.; Pradal, M.; Mouret, J.-R.; Nidelet, T.

10.1101/363531 — microbiology — Posted on 2018-07-06

1937 Development of a genetically encoded sensor for endogenous CaMKII activity

Ardestani, G.; West, M.; Maresca, T. J.; Fissore, R. A.; Stratton, M. M.

10.1101/359398 — biochemistry — Posted on 2018-07-06

1938 Latitudinal Variation in Life History Reveals a Reproductive Disadvantage in the Texas Horned Lizard (Phrynosoma cornutum)

Hughes, D. F.; Meshaka, W. E.; Lieb, C. S.; Pechmann, J. H.

10.1101/364091 — zoology — Posted on 2018-07-06

1939 Sirt7 regulates circadian phase coherence of hepatic circadian clock via a body temperature/Hsp70-Sirt7-Cry1 axis

Liu, Z.; Qian, M.; Tang, X.; Hu, W.; Zhang, S.; Meng, F.; Sun, S.; Cao, X.; Pang, Q.; Zhao, B.; Liu, B.

10.1101/363176 — molecular biology — Posted on 2018-07-06

1940 Unliganded progesterone receptor governs estrogenreceptor gene expression by regulating DNA methylation in breast cancer cells

Verde, G.; De Llobet, L. I.; Wright, R. H. G.; Quilez, J.; Peiro, S.; Le Dily, F.; Beato, M.

10.1101/192567 — molecular biology — Posted on 2018-07-06

1941 Genetic evidence for two carbon fixation pathways in symbiotic and free-living bacteria: The Calvin-Bassham cycle and the reverse tricarboxylic acid cycle

Rubin Blum, M.; Dubilier, N.; Kleiner, M.

10.1101/363564 — microbiology — Posted on 2018-07-06

1942 Evaluating bacterial and functional diversity of human gut microbiota by complementary metagenomics and metatranscriptomics

Ranjan, R.; Rani, A.; Finn, P. W.; Perkins, D. L.

10.1101/363200 — microbiology — Posted on 2018-07-06

1943 Microbial subnetworks related to short-term diel O2 fluxes within geochemically distinct freshwater wetlands

Horton, D. J.; Cooper, M.; Wing, A.; Kourtev, P.; Uzarski, D.; Learman, D.

10.1101/363226 — microbiology — Posted on 2018-07-06

1944 Increased oxidative stress tolerance by Superoxide dismutase overexpression in Mesorhizobium loti.

Gonzalez, P. J.; Lozano, M. J.; Lascano, H. R.; Lagares, A.; Melchiorre, M. N.

10.1101/363556 — microbiology — Posted on 2018-07-06

1945 Evidence for a Recombinant Origin of HIV-1 group M from Genomic Variation

Olabode, A. S.; Avino, M.; Ng, T.; Abu-Sardanah, F.; Dick, D. W.; Poon, A. F.

10.1101/364075 — evolutionary biology — Posted on 2018-07-06

1946 Habitat fragmentation and species diversity in competitive species communities

Rybicki, J.; Abrego, N.; Ovaskainen, O.

10.1101/363234 — ecology — Posted on 2018-07-06

1947 MICRORNA-184 AND ITS LNCRNA SPONGE UCA1 ARE INDUCED IN WOUNDED KERATINOCYTES IN A STORE-OPERATED CALCIUM ENTRY-DEPENDENT MANNER

Richardson, A.; Owens, D. J.; Ross, K.

10.1101/328401 — cell biology — Posted on 2018-07-06

1948 State-Dependent Lipid Interactions with the A2a Receptor Revealed by MD Simulations Using In Vivo-Mimetic Membranes

Song, W.; Yen, H.-Y.; Robinson, C. V.; Sansom, M.

10.1101/362970 — biophysics — Posted on 2018-07-06

1949 Learning cellular morphology with neural networks

Schubert, P.; Dorkenwald, S.; Januszewski, M.; Jain, V.; Kornfeld, J.

10.1101/364034 — neuroscience — Posted on 2018-07-06

1950 Short-term radiofrequency exposure from new generation mobile phones reduces EEG alpha power with no effects on cognitive performance

Vecsei, Z.; Knakker, B.; Juhasz, P.; Thuroczy, G.; Trunk, A.; Hernadi, I.

10.1101/363929 — neuroscience — Posted on 2018-07-06

1951 Predicting Growth and Carcass Traits in Swine Using Metagenomic Data and Machine Learning Algorithms

Maltecca, C.; Lu, D.; Schillebeeckx, C.; McNulty, N.; Schawb, C.; Schull, C.; Tiezzi, F.

10.1101/363309 — genetics — Posted on 2018-07-06

1952 Combining population genomics and forward simulations to investigate stocking impacts: A case study of Muskellunge (Esox masquinongy) from the St. Lawrence River basin

Rougemont, Q.; Carrier, A.; Leluyer, J.; Ferchaud, A.-L.; Farrell, J.; Hatin, D.; Brodeur, P.; Bernatchez, L.

10.1101/363283 — evolutionary biology — Posted on 2018-07-06

1953 Is the predation risk of mate-searching different between the sexes?

Torsekar, V. R.; Isvaran, K.; Balakrishnan, R.

10.1101/363507 — ecology — Posted on 2018-07-06

1954 A hybrid approach for automated mutation annotation of the extended human mutation landscape in scientific literature

Jimeno Yepes, A.; MacKinlay, A.; Gunn, N.; Schieber, C.; Faux, N.; Downton, M.; Goudey, B.; Martin, R. L.

10.1101/363473 — bioinformatics — Posted on 2018-07-06

1955 Covariation analysis with improved parameters reveals conservation in lncRNA structures

Tavares, R. C. A.; Pyle, A. M.; Somarowthu, S.

10.1101/364109 — bioinformatics — Posted on 2018-07-06

1956 Generating Realistic Morphologies of Neurons in Rodent Hippocampus with DGCAN

Hadjiabadi, D. H.

10.1101/363481 — bioengineering — Posted on 2018-07-06

1957 Soft Substrate Maintains Proliferative and Multi-lineage Potential of Human Mesenchymal Stem Cells on Long Term Expansion

Kureel, S. K.; Mogha, P.; Khadpekar, A.; Kumar, V.; Joshi, R.; Das, S.; Bellare, J.; Majumder, A.

10.1101/364059 — bioengineering — Posted on 2018-07-06

1958 Isolation and characterization of mutants with altered seminal root numbers in hexaploid wheat

Shorinola, O.; Kaye, R.; Kepinski, S.; UAUY, C.

10.1101/364018 — plant biology — Posted on 2018-07-06

1959 Distracting linguistic information impairs neural entrainment to attended speech

Dai, B.; McQueen, J. M.; Terporten, R.; Hagoort, P.; Kosem, A.

10.1101/364042 — neuroscience — Posted on 2018-07-06

1960 Fast and flexible bacterial genomic epidemiology with PopPUNK

Lees, J. A.; Harris, S. R.; Tonkin-Hill, G.; Gladstone, R. A.; Lo, S.; Weiser, J. N.; Corander, J.; Bentley, S. D.; Croucher, N. J.

10.1101/360917 — genomics — Posted on 2018-07-06

1961 Genome-wide maps of distal gene regulatory regions active in the human placenta

Zhang, J.; Simonti, C. N.; Capra, J. A.

10.1101/364026 — genomics — Posted on 2018-07-06

1962 Temperature but not the circadian clock determines nocturnal carbohydrate availability for growth in cereals

Mueller, L. M.; Gol, L.; Jeon, J.-S.; Weber, A. P.; Davis, S. J.; von Korff, M.

10.1101/363218 — plant biology — Posted on 2018-07-06

1963 Inference, validation and predictions about statistics and propagation of cortical spiking in vivo

Wilting, J.; Priesemann, V.

10.1101/363085 — neuroscience — Posted on 2018-07-06

1964 Fine-scale excitatory cortical circuits reflect embryonic progenitor pools

Ellender, T. J.; Avery, S. V.; Mahfooz, K.; von Klemperer, A.; Nixon, S. L.; Buchan, M. J.; van Rheede, J. J.; Gatti, A.; Waites, C.; Newey, S. E.; Akerman, C. J.

10.1101/363069 — neuroscience — Posted on 2018-07-06

1965 Biparental inheritance of chloroplasts is controlled by lipid biosynthesis in evening primroses

Sobanski, J.; Giavalisco, P.; Fischer, A.; Walther, D.; Schoettler, M. A.; Pellizzer, T.; Golczyk, H.; Obata, T.; Bock, R.; Sears, B. B.; Greiner, S.

10.1101/330100 — genetics — Posted on 2018-07-06

1966 Deriving general conditions and mechanisms for division of labor using the cell-based simulator gro

Gregorio-Godoy, P.; Perez del Pulgar, G.; Rodriguez-Regueira, M.; Rodriguez-Paton, A.

10.1101/363093 — evolutionary biology — Posted on 2018-07-06

1967 A framework for estimating the effects of sequential reproductive barriers: implementation using Bayesian models with field data from cryptic species

Peccoud, J.; Pleydell, D.; Sauvion, N.

10.1101/363168 — evolutionary biology — Posted on 2018-07-06

1968 Systems Biology Understanding of the Effects of Lithium on Cancer.

Ge, W.; Jakobsson, E.

10.1101/363077 — cancer biology — Posted on 2018-07-06

1969 Charting Tissue Expression Anatomy by Spatial Transcriptome Deconvolution

Maaskola, J.; Bergenstrahle, L.; Jurek, A.; Fernandez Navarro, J.; Lagergren, J.; Lundeberg, J.

10.1101/362624 — bioinformatics — Posted on 2018-07-06

1970 Differences in firing efficiency, chromatin and transcription underlie the developmental plasticity of Arabidopsis originome

Sequeira-Mendes, J.; Vergara, Z.; Peiro, R.; Morata, J.; Araguez, I.; Costas, C.; Mendez-Giraldez, R.; Casacuberta, J.; Bastolla, U.; Gutierrez, C.

10.1101/258301 — plant biology — Posted on 2018-07-06

1971 Hydrophobic organic contaminants are not linked to microplastic uptake in Baltic Sea herring

Ogonowski, M.; Wenman, V.; Danielsson, S.; Gorokhova, E.

10.1101/363127 — pharmacology and toxicology — Posted on 2018-07-06

1972 Lead-DBS v2: Towards a comprehensive pipeline for deep brain stimulation imaging

Horn, A.; Li, N.; Dembek, T. A.; Kappel, A.; Boulay, C.; Ewert, S.; Tietze, A.; Husch, A.; Perera, T.; Neumann, W.-J.; Reisert, M.; Si, H.; Oostenveld, R.; Rorden, C.; Yeh, F.-C.; Fang, Q.; Herrington, T. M.; Vorwerk, J.; Kuehn, A. A.

10.1101/322008 — neuroscience — Posted on 2018-07-06

1973 Dual process coding of recalled location in human oscillatory brain activity

MacLean, M. H.; Bullock, T.; Giesbrecht, B.

10.1101/361774 — neuroscience — Posted on 2018-07-06

1974 Influence of deterministic and stochastic processes on microbial community assembly during aerobic granulation

Liebana, R.; Szabo, E.; Persson, F.; Modin, O.; Hermansson, M.; Wilen, B.-M.

10.1101/356303 — microbiology — Posted on 2018-07-06

1975 Impact of transposable elements on genome structure and evolution in bread wheat

Wicker, T.; Gundlach, H.; Spannagl, M.; Uauy, C.; Borrill, P.; Ramirez-Gonzalez, R. H.; De Oliveira, R.; International Wheat Genome Sequencing Consortium, ; Mayer, K. F. X.; Paux, E.; Choulet, F.

10.1101/363192 — genomics — Posted on 2018-07-06

1976 Prospective Study of Polygenic Risk, Protective Factors, and Incident Depression Following Combat Deployment in US Army Soldiers

Choi, K.; Chen, C.-Y.; Ursano, R.; Sun, X.; Jain, S.; Kessler, R.; Koenen, K.; Wang, M.-J.; Wynn, G.; Major Depressive Disorder Working Group of the Psychiatric Genomics Consortium, ; Campbell-Sills, L.; Stein, M.; Smoller, J.

10.1101/361725 — genetics — Posted on 2018-07-06

1977 Relationship between ACTN3 and ACE polymorphisms and FIFA World averaged rating.

Ilinsky, V.; Zakharova, N.

10.1101/363358 — genetics — Posted on 2018-07-06

1978 The macroecology of passerine nest types, in the light of macroevolution

McEntee, J. P.; Zelazny, Z.; Burleigh, J. G.

10.1101/360958 — evolutionary biology — Posted on 2018-07-06

1979 Tumor suppressor DAPK1 catalyzes adhesion assembly on rigid but anoikis on soft matrices

Qin, R.; Wolfenson, H.; Saxena, M.; Sheetz, M.

10.1101/320739 — cell biology — Posted on 2018-07-06

1980 Linking the International Wheat Genome Sequencing Consortium bread wheat reference genome sequence to wheat genetic and phenomic data

Alaux, M.; Rogers, J.; Letellier, T.; Flores, R.; Alfama, F.; Pommier, C.; Mohellibi, N.; Durand, S.; Kimmel, E.; Michotey, C.; Guerche, C.; Loaec, M.; Laine, M.; Steinbach, D.; Choulet, F.; Rimbert, H.; Leroy, P.; Guilhot, N.; Salse, J.; Feuillet, C.; International Wheat Genome Sequencing Consortium, ; Paux, E.; Eversole, K.; Adam-Blondon, A.-F.; Quesneville, H.

10.1101/363259 — bioinformatics — Posted on 2018-07-06

1981 Structural elements required for coupling ion and substrate transport in the neurotransmitter transporter homolog LeuT.

Zhang, Y.-W.; Tavoulari, S.; Sinning, S.; Aleksandrova, A.; Forrest, L. R.; Rudnick, G.

10.1101/283176 — biochemistry — Posted on 2018-07-06

1982 Episodic Control as Meta-Reinforcement Learning

Ritter, S.; Wang, J. X.; Kurth-Nelson, Z.; Botvinick, M. M.

10.1101/360537 — neuroscience — Posted on 2018-07-06

1983 Intracellular calcium dysregulation precedes muscle decline in C. elegans modeling Duchenne muscular dystrophy

Rodriguez, A.; Hughes, K.; Schuler, A.; Rodemoyer, B.; Bainbridge, C.; Barickman, L.; Cuciarone, K.; Kullman, A.; Lim, C.; Gutta, N.; Giliana, Y.; Sathyamurthy, L.; Singaraju, S.; Vemuri, S.; Andriulis, V.; Niswonger, D.; Vidal-Gadea, A. G.

10.1101/360388 — molecular biology — Posted on 2018-07-06

1984 Genomic underpinnings of lifespan allow prediction and reveal basis in modern risks

Timmers, P. R.; Mounier, N.; Lall, K.; Fischer, K.; Ning, Z.; Feng, X.; Bretherick, A.; Clark, D. W.; eQTLGen Consortium, ; Shen, X.; Esko, T.; Kutalik, Z.; Wilson, J. F.; Joshi, P.

10.1101/363036 — genomics — Posted on 2018-07-06

1985 Identification of meiotic recombination through gamete genome reconstruction using whole genome linked-reads

Xu, P.; Human Genome Structural Variation Consortium, ; Chong, Z.

10.1101/363341 — genomics — Posted on 2018-07-06

1986 Transcriptome-wide association supplements genome-wide association in Zea mays

Kremling, K.; Diepenbrock, C.; Gore, M.; Buckler, E.; Bandillo, N.

10.1101/363242 — genetics — Posted on 2018-07-06

1987 GWAS of QRS Duration Identifies New Loci Specific to Hispanic/Latino Populations

Swenson, B.; Louie, T.; Lin, H. J.; Mendez-Gairldez, R.; Below, J. E.; Laurie, C. C.; Kerr, K. F.; Highland, H.; Thornton, T. A.; Ryckman, K. K.; Kooperberg, C.; Soliman, E. Z.; Seyerle, A. A.; Guo, X.; Taylor, K. D.; Yao, J.; Heckbert, S. R.; Darbar, D.; Petty, L. E.; McKnight, B.; Cheng, S.; Bello, N. A.; Whitsel, E. A.; Hanis, C. L.; Nalls, M. A.; Evans, D. S.; Rotter, J. I.; Sofer, T.; Avery, C.; Sotoodehnia, N.

10.1101/363457 — genetics — Posted on 2018-07-06

1988 Causal relationships between blood lipids and depression phenotypes: A Mendelian randomization analysis

So, H.-C.; Cheng, Y.-y.; Chau, C. K.-l.

10.1101/363119 — genetics — Posted on 2018-07-06

1989 Phosphorylation of LXRα impacts atherosclerosis regression by modulating monocyte/macrophage trafficking

Shrestha, E.; Voisin, M.; Barrett, T. J.; Nishi, H.; Cantor, D. J.; Hussein, M. A.; David, G.; Pineda-Torra, I.; Fisher, E. A.; Garabedian, M. J.

10.1101/363366 — genetics — Posted on 2018-07-06

1990 The contrasting response to drought and waterlogging is underpinned by divergent DNA methylation programs associated with gene expression in sesame

Dossa, K.; Mmadi, M. A.; Zhou, R.; Zhou, Q.; Yang, M.; Cisse, N.; Diouf, D.; Wang, L.; Zhang, X.

10.1101/362905 — plant biology — Posted on 2018-07-06

1991 Ultra-fine temporal resolution in auditory processing is preserved in aged mice without peripheral hearing loss

Osterhagen, L.; Hildebrandt, K. J.

10.1101/363994 — neuroscience — Posted on 2018-07-06

1992 Limits on visual awareness for multiple objects: a bottleneck in low-level edge detection rather than high-level representational architecture

Zopf, R.; Schweinberger, S. R.; Rich, A. N.

10.1101/363515 — neuroscience — Posted on 2018-07-06

1993 Properties of the epigenetic clock and age acceleration

El Khoury, L. Y.; Gorrie-Stone, T.; Smart, M.; Hughes, A.; Bao, Y.; Andrayas, A.; Burrage, J.; Hannon, E.; Kumari, M.; Mill, J.; Schalkwyk, L. C.

10.1101/363143 — genomics — Posted on 2018-07-06

1994 Sequencing of Panax notoginseng genome reveals genes involved in disease resistance and ginsenoside biosynthesis

Fan, G.; Fu, Y.; Yang, B.; Liu, M.; Zhang, H.; Liang, X.; Shi, C.; Ma, K.; Wang, J.; Liu, W.; Shao, L.; Huang, C.; Guo, M.; Cai, J.; Wong, A. K.; Li, C.; Zhuang, D.; Chen, K.; Cong, W.; Sun, X.; Liu, X.; Xu, X.; Tsui, S. K.; Chen, W.; Lee, S. M.

10.1101/362046 — genomics — Posted on 2018-07-06

1995 Genetic correlations between pain phenotypes and depression and neuroticism

Meng, W.; Adams, M.; Deary, I.; Palmer, C.; McIntosh, A. M.; Smith, B.

10.1101/362574 — genetics — Posted on 2018-07-06

1996 Rab1b and ARF5 are novel RNA-binding proteins involved in IRES-driven RNA localization

Fernandez-Chamorro, J.; Francisco-velilla, R.; Ramajo, J.; Martinez-Salas, E.

10.1101/363580 — molecular biology — Posted on 2018-07-06

1997 Leucine Rich Repeat Kinase 2 (LRRK2) Gly2019Ser Mutation Is Absent In A Second Cohort Of Nigerian Africans With Parkinson Disease.

Okubadejo, N. U.; Rizig, M.; Ojo, O. O.; Hallgeir, J.; Oshinaike, O.; Brown, E.; Houlden, H.

10.1101/363945 — genetics — Posted on 2018-07-06

1998 Drosophila Hox genes induce melanised pseudo-tumours when misexpressed in hemocytes

Ponrathnam, T.; Mishra, R.

10.1101/363978 — cancer biology — Posted on 2018-07-06

1999 Rab1b and ARF5 are novel RNA-binding proteins involved in IRES-driven RNA localization

Martinez-Salas, E.; Fernandez-Chamorro, J.; Francisco-Velilla, R.; Ramajo, J.

10.1101/363580 — molecular biology — Posted on 2018-07-06

2000 Integrating genomic resources to present full gene and promoter capture probe sets for bread wheat

Gardiner, L.-J.; Brabbs, T.; Akhunova, A.; Jordan, K.; Budak, H.; Richmond, T.; Singh, S.; Catchpole, L.; Akhunov, E.; Hall, A.

10.1101/363663 — genomics — Posted on 2018-07-06

2001 Anthropogenic habitat alteration leads to rapid loss of adaptive variation and restoration potential in wild salmon populations

Thompson, T. Q.; Bellinger, R. M.; O'Rourke, S. M.; Prince, D. J.; Stevenson, A. E.; Rodrigues, A. T.; Sloat, M. R.; Speller, C. F.; Yang, D. Y.; Butler, V. L.; Banks, M. A.; Miller, M. R.

10.1101/310714 — genetics — Posted on 2018-07-06

2002 Multi-way methods for understanding longitudinal intervention effects on bacterial communities

Maage, I.; Steppeler, C.; Berget, I.; Paulsen, J. E.; Rud, I.

10.1101/363630 — bioinformatics — Posted on 2018-07-06

2003 polyDFEv2.0: Testing for invariance of the distribution of fitness effects within and across species

Tataru, P.; Bataillon, T.

10.1101/363887 — bioinformatics — Posted on 2018-07-06

2004 Moderate consistency in smooth newt behaviour

Chajma, P.; Vojar, J.; Kopecky, O.

10.1101/363648 — animal behavior and cognition — Posted on 2018-07-06

2005 Intrinsic rewards modulate sensorimotor adaptation

Kim, H.; Parvin, D.; Ivry, R.

10.1101/363606 — neuroscience — Posted on 2018-07-06

2006 Molecular Complexes for Effective Inhibition of Tau Aggregation

Gorantla, N. V.; Landge, V. G.; Nagaraju, P. G.; Sunny, L. P.; Nair, A.; Midya, S. P.; Priyadarshini, P.; Ekambaram, B.; Chinnathambi, S.

10.1101/363572 — neuroscience — Posted on 2018-07-06

2007 Statistical shape analysis of large datasets based on diffeomorphic iterative centroids

Cury, C.; Glaunes, J. A.; Toro, R.; Chupin, M.; Shumann, G.; Frouin, V.; Poline, J. b.; Colliot, O.; The Imagen Consortium,

10.1101/363861 — neuroscience — Posted on 2018-07-06

2008 Large and fast human pyramidal neurons associate with intelligence

Goriounova, N. A.; Heyer, D. B.; Wilbers, R.; Verhoog, M. B.; Giugliano, M.; Verbist, C.; Obermayer, J.; Kerkhofs, A.; Smeding, H.; Verberne, M.; Idema, S.; Baayen, J. C.; Pieneman, A. W.; de Kock, C. P. J.; Klein, M.; Mansvelder, H. D.

10.1101/296343 — neuroscience — Posted on 2018-07-06

2009 Genetic evidence for two carbon fixation pathways in symbiotic and free-living bacteria: The Calvin-Bassham cycle and the reverse tricarboxylic acid cycle

Rubin Blum, M.; Dubilier, N.; Kleiner, M.

10.1101/363564 — microbiology — Posted on 2018-07-06

2010 Immuno-genomic PanCancer Landscape Reveals Diverse Immune Escape Mechanisms and Immuno-Editing Histories

10.1101/285338 — genomics — Posted on 2018-07-06

2011 New tools for diet analyses: nanopore sequencing of metagenomic DNA from stomach contents to quantify diet in an invasive population of rats

Pearman, W.; Smith, A. N. H.; Breckell, G.; Dale, J.; Freed, N. E.; Silander, O. K.

10.1101/363622 — ecology — Posted on 2018-07-06

2012 Glucocerebrosidase rescues alpha-synuclein from amyloid formation

Barber, M.; Baldwin, A.; Gilbert, R.; Muller, H.

10.1101/363986 — biophysics — Posted on 2018-07-06

2013 Bacterial dynamin-like protein DynA mediates lipid and content mixing and shows phospholipid specificity

Guo, L.; Bramkamp, M.

10.1101/363689 — biochemistry — Posted on 2018-07-06

2014 Collective decision-making by rational individuals

Mann, R. P.

10.1101/363838 — animal behavior and cognition — Posted on 2018-07-06

2015 Flexible Learning-Free Segmentation and Reconstruction for Sparse Neuronal Circuit Tracing

Shahbazi, A.; Kinnison, J.; Vescovi, R.; Du, M.; Hill, R.; Jösch, M.; Takeno, M.; Zeng, H.; da Costa, N. M.; Grutzendler, J.; Kasthuri, N.; Scheirer, W. J.

10.1101/278515 — neuroscience — Posted on 2018-07-06

2016 Transcription-dependent spreading of canonical yeast GATA factor across the body of highly expressed genes

Ronsmans, A.; Wery, M.; Gautier, C.; Descrimes, M.; Dubois, E.; Morillon, A.; Georis, I.

10.1101/238550 — genomics — Posted on 2018-07-06

2017 Evolution of Endothelin signaling and diversification of adult pigment pattern in Danio fishes

Spiewak, J.; Bain, E.; Liu, J.; Kou, K.; Sturiale, S.; Patterson, L.; Diba, P.; Eisen, J.; Braasch, I.; Ganz, J.; Parichy, D. M.

10.1101/363879 — developmental biology — Posted on 2018-07-06

2018 Lineage specific histories of Mycobacterium tuberculosis dispersal in Africa and Eurasia

O'Neill, M. B.; Shockey, A. C.; Zarley, A.; Aylward, W.; Eldholm, V.; Kitchen, A.; Pepperell, C. S.

10.1101/210161 — evolutionary biology — Posted on 2018-07-06

2019 CRISPR-Cas12b-assisted nucleic acid detection platform

Li, L.; Li, S.; Wang, J.

10.1101/362889 — molecular biology — Posted on 2018-07-06

2020 Staphylococcus aureus wall teichoic acid is a pathogen-associated molecular pattern that is recognized by langerin (CD207) on skin Langerhans cells

van Dalen, R.; De La Cruz Diaz, J. S.; Rumpret, M.; Fuchsberger, F. F.; van Teijlingen, N. H.; Hanske, J.; Rademacher, C.; Geijtenbeek, T. B. H.; Van Strijp, J. A. G.; Weidenmaier, C.; Peschel, A.; Kaplan, D. H.; van Sorge, N. M.

10.1101/238469 — microbiology — Posted on 2018-07-06

2021 Energetic substrate availability regulates synchronous activity in an excitatory neural network

Tourigny, D. S.; Abdul Karim, M. K.; Echeveste, R.; Kotter, M. R.; O'Neill, J. S.

10.1101/363671 — neuroscience — Posted on 2018-07-06

2022 Characterization of fluorescent proteins, promoters, and selectable markers for applications in the Lyme disease spirochete Borrelia burgdorferi

Takacs, C. N.; Scott, M.; Jacobs-Wagner, C.

10.1101/363390 — microbiology — Posted on 2018-07-06

2023 Altered hsrω lncRNA levels in activated Ras background further enhance Ras activity in Drosophila eye and induces more R7 photoreceptors

Ray, M.; Lakhotia, S. C.

10.1101/224543 — cell biology — Posted on 2018-07-06

2024 Variation in competitive ability with mating system, ploidy and range expansion in four Capsella species

Yang, X.; Lascoux, M.; Glemin, S.

10.1101/214866 — evolutionary biology — Posted on 2018-07-06

2025 Multiple antibodies identify glypican-1 associated with exosomes from pancreatic cancer cells and serum from patients with pancreatic cancer

Dong, C.; Huang, L.; Melo, S.; Kurywchak, P.; Peng, Q.; Kahlert, C.; LeBleu, V.; Kalluri, R.

10.1101/145706 — cancer biology — Posted on 2018-07-06

2026 Compound heterozygous ZP1 mutations cause empty follicle syndrome in infertile sisters

Sun, L.; Fang, X.; Chen, Z. H.; Zhang, H. W.; Peng, X. F.; Deng, Y.; Xue, T.; Yin, M. N.; Zhu, Q. Y.; Liu, C. L.; Li, N.

10.1101/363911 — genetics — Posted on 2018-07-06

2027 Integrated soybean transcriptomics, metabolomics, and chemical genomics reveal the importance of the phenylpropanoid pathway and antifungal activity in resistance to the broad host range pathogen Sclerotinia sclerotiorum

Ranjan, A.; Westrick, N.; Jain, S.; Piotrowski, J.; Ranjan, M.; Kessens, R.; Stiegman, L.; Grau, C.; Smith, D.; Kabbage, M.

10.1101/363895 — plant biology — Posted on 2018-07-06

2028 Both rare and common genetic variants contribute to autism in the Faroe Islands

10.1101/363853 — genetics — Posted on 2018-07-06

2029 Comprehensive cross-disorder analyses of CNTNAP2 suggest it is unlikely to be a primary risk gene for psychiatric disorders.

Toma, C.; Pierce, K. D.; Shaw, A. D.; Heath, A.; Mitchell, P. B.; Schofield, P. R.; Fullerton, J. M.

10.1101/363846 — genetics — Posted on 2018-07-06

2030 A Framework for Predicting Design Failures in Engineered Genetic Codes

Yu, B.; Carr, P.; Murphy, M.

10.1101/363812 — bioengineering — Posted on 2018-07-06

2031 Widespread separation of the polypyrimidine tract from 3’ AG by G tracts in association with alternative exons in metazoa and plants

Nguyen, H.; Xie, J.

10.1101/363804 — molecular biology — Posted on 2018-07-06

2032 Long-term blooming filamentous calcareous alga provides substrate for other coral-competitive macroalgae in the degraded lagoon of Dongsha Atoll (Pratas), Taiwan

Nieder, C.; Chen, C. A.; Liu, S.-L.

10.1101/363796 — ecology — Posted on 2018-07-06

2033 Drosophila kinesin-8 stabilises kinetochore-microtubule interaction

Edzuka, T.; Goshima, G.

10.1101/363150 — cell biology — Posted on 2018-07-06

2034 Structure of the ciliary axoneme at nanometer resolution reconstructed by TYGRESS

Song, K.; Shang, Z.; Fu, X.; Lou, X.; Grigorieff, N.; Nicastro, D.

10.1101/363317 — cell biology — Posted on 2018-07-06

2035 The effect of stride length on lower extremity joint kinetics at various gait speeds

McGrath, R. L.; Ziegler, M. L.; Pires-Fernandes, M.; Knarr, B. A.; Higginson, J. S.; Sergi, F.

10.1101/363788 — bioengineering — Posted on 2018-07-06

2036 Ancestral Roles of the Fam20C Family of Secreted Protein Kinases Revealed by Functional Analysis in C. elegans

Gerson-Gurwitz, A.; Worby, C. A.; Lee, K.-Y.; Khaliullin, R.; Bouffard, J.; Cheerambathur, D.; Cram, E. J.; Oegema, K.; Dixon, J. E.; Desai, A.

10.1101/363440 — cell biology — Posted on 2018-07-06

2037 Tissue-specific degradation of essential centrosome components reveals distinct microtubule populations at microtubule organizing centers

Sallee, M. D.; Zonka, J. C.; Skokan, T. D.; Raftrey, B. C.; Feldman, J. L.

10.1101/363325 — cell biology — Posted on 2018-07-06

2038 Identification of substrates for the conserved prolyl hydroxylase Ofd1 using quantitative proteomics in fission yeast

Gu, H.; Hughes, B. T.; Espenshade, P. J.

10.1101/363747 — cell biology — Posted on 2018-07-06

2039 PIK3C2B promotes epithelial to mesenchymal transition and EGFR inhibitors insensitivity in epidermal squamous cell carcinoma.

Crespo Pomar, S.; Borgström, A.; Arcaro, A.; Charles, R.-P.

10.1101/363721 — cancer biology — Posted on 2018-07-06

2040 Integrated Disease Surveillance and Response (IDSR) in Malawi: Implementation Gaps and Challenges for Timely Alert

Wu, T.-S. J.; Kagoli, M.; Kaasboll, J. J.; Bjune, G. A.

10.1101/363713 — bioinformatics — Posted on 2018-07-06

2041 Simple and rapid separation of diverse neoagaro-oligosaccharides

Lin, F.; xiao, m.

10.1101/363739 — biochemistry — Posted on 2018-07-06

2042 Help-seeking behavior for problematic substance uses in Bahir Dar town, North-West Ethiopia

gobie, h. b.; Mekonen, T.; Fekadu, W.; Legas, G.; Getnet, A.

10.1101/363705 — scientific communication and education — Posted on 2018-07-06

2043 Predictors of Malaria Rapid Diagnostic Tests’ Utilisation Among Healthcare Workers in Zamfara State

Usman, R.; Umar, A. A.; Gidado, S.; Gobir, A. A.; Obi, I. F.; Ajayi, I.; Ajumobi, O.

10.1101/363697 — epidemiology — Posted on 2018-07-06

2044 Phenotypic Age: a novel signature of mortality and morbidity risk

Liu, Z.; Kuo, P.-L.; Horvath, S.; Crimmins, E.; Ferrucci, L.; Levine, M.

10.1101/363291 — epidemiology — Posted on 2018-07-05

2045 Hematological and Serum Biochemical Analysis of Streptozotocin-Induced Insulin Dependent Diabetes Mellitus in Male Adult Wistar Rats

Yakhchalian, N.; Mohammadian, N.; Hatami, K.; Nosrati, H.; Yousofvand, N.

10.1101/359844 — pharmacology and toxicology — Posted on 2018-07-05

2046 Non-mydriatic chorioretinal imaging in a transmission geometry and application to retinal oximetry

Weber, T. D.; Mertz, J.

10.1101/314765 — biophysics — Posted on 2018-07-05

2047 Super-resolution fight club: A broad assessment of 2D & 3D single-molecule localization microscopy software

Sage, D.; Pham, T.-A.; Babcock, H.; Lukes, T.; Pengo, T.; Velmurugan, R.; Herbert, A.; Agrawal, A.; Colabrese, S.; Wheeler, A.; Archetti, A.; Rieger, B.; Ober, R.; Hagen, G. M.; Sibarita, J.-B.; Ries, J.; Henriques, R.; Unser, M.; Holden, S.

10.1101/362517 — biophysics — Posted on 2018-07-05

2048 Local protein synthesis in axon terminals and dendritic spines differentiates plasticity contexts

Hafner, A.-S.; Donlin-Asp, P.; Leitch, B.; Herzog, E.; Schuman, E. M.

10.1101/363184 — neuroscience — Posted on 2018-07-05

2049 Csmd2 is a Synaptic Transmembrane Protein that Interacts with PSD-95

Gutierrez, M. A.; Dwyer, B. E.; Franco, S. J.

10.1101/362657 — cell biology — Posted on 2018-07-05

2050 Ade2 functions in the Drosophila fat body to promote sleep

Yurgel, M. E.; Shah, K.; Bennick, R. A.; DiAngelo, J.; Keene, A.

10.1101/361055 — neuroscience — Posted on 2018-07-05

2051 Different mechanisms drive the maintenance of polymorphism at loci subject to strong versus weak fluctuating selection

Bertram, J.; Masel, J.

10.1101/164723 — evolutionary biology — Posted on 2018-07-05

2052 Nonlinear processing of shape information in rat lateral extrastriate cortex

Matteucci, G.; Bellacosa Marotti, R.; Rosselli, F. B.; Zoccolan, D.

10.1101/341792 — neuroscience — Posted on 2018-07-05

2053 Pan-cancer machine learning predictors of primary site of origin and molecular subtype

Flynn, W. F.; Namburi, S.; Paisie, C. A.; Reddi, H. V.; Li, S.; Karuturi, R. K. M.; George, J.

10.1101/333914 — bioinformatics — Posted on 2018-07-05

2054 Using global t-SNE to preserve inter-cluster data structure

Zhou, Y.; Sharpee, T.

10.1101/331611 — bioinformatics — Posted on 2018-07-05

2055 The Growth Hormone Secretagogue Receptor, Ghrelin and Biochemical Signaling Molecules in Human Heart Failure

Sullivan, R.; Randhawa, V.; Stokes, A.; Wu, D.; Lalonde, T.; Kiaii, B.; Luyt, L.; Wisenberg, G.; Dhanvantari, S.

10.1101/362525 — cell biology — Posted on 2018-07-05

2056 CAN NEUROPATHIC PAIN PREDICT RESPONSE TO ARTHROPLASTY IN KNEE OSTEOARTHRITIS? A PROSPECTIVE OBSERVATIONAL COHORT STUDY.

Soni, A.; Leyland, K. M.; Kiran, A.; Arden, N. K.; Cooper, C.; Wanigasekera, V.; Tracey, I.; Javaid, K.; Price, A.

10.1101/360412 — epidemiology — Posted on 2018-07-05

2057 Matrilineal Transmission of Familial Excess Longevity (mtFEL): Effects on Cause-specific Mortality in Utah, 1904-2002

O'Brien, E.; Cawthon, R. M.; Smith, K. R.; Kerber, R. A.

10.1101/361881 — epidemiology — Posted on 2018-07-05

2058 An Advancing Front of Old Age Human Survival

Zuo, W.; Jiang, S.; Guo, Z.; Feldman, M.; Tuljapurkar, S.

10.1101/361782 — epidemiology — Posted on 2018-07-05

2059 Clinical data specification and coding for cross-analyses with omics data in autoimmune disease trials

Lorenzon, R.; Drakos, I.; Ribet, C.; Harris, S.; Cordoba, M.; Tran, O.; Dasque, E.; Cacoub, P.; Hartemann, A.; Bodaghi, B.; Saadoun, D.; Berenbaum, F.; Grateau, G.; Ronco, P.; Benveniste, O.; Mariampillai, K.; Sellam, J.; Seksik, P.; Rosenzwajg, M.; Six, A.; Bernard, C.; Aheng, C.; Vicaut, E.; Klatzmann, D.; Mariotti-Ferrandiz, E.

10.1101/360719 — clinical trials — Posted on 2018-07-05

2060 Variation in competitive ability with mating system, ploidy and range expansion in four Capsella species

Yang, X.; Lascoux, M.; Glemin, S.

10.1101/214866 — evolutionary biology — Posted on 2018-07-05

2061 MVSE: an R-package that estimates a climate-driven mosquito-borne viral suitability index.

Obolski, U.; Perez, P. N.; Villabona-Arenas, C. J.; Faria, N. R.; Lourenco, J.

10.1101/360701 — epidemiology — Posted on 2018-07-05

2062 Strong and specific associations between cardiovascular risk factors and brain white matter micro- and macro-structure in health ageing

Fuhrmann, D.; Nesbitt, D.; Shafto, M.; Rowe, J. B.; Price, D.; Gadie, A.; Cam-CAN, ; Kievit, R. A.

10.1101/264770 — neuroscience — Posted on 2018-07-05

2063 Degeneracy makes music and speech robust to individual differences in perception

Jasmin, K.; Dick, F.; Holt, L.; Tierney, A. T.

10.1101/263079 — neuroscience — Posted on 2018-07-05

2064 Divergent genetic mechanisms lead to spiny hair in mammals

Goncalves, G. L.; Maestri, R.; Moreira, G. R. P.; Jacobi, M. A. M.; Freitas, T. R. O.; Hoekstra, H. E.

10.1101/267385 — genetics — Posted on 2018-07-05

2065 NAD(P)HX repair deficiency causes central metabolic perturbations in yeast and human cells

Becker-Kettern, J.; Paczia, N.; Conrotte, J.-F.; Zhu, C.; Fiehn, O.; Jung, P. P.; Steinmetz, L. M.; Linster, C. L.

10.1101/302257 — biochemistry — Posted on 2018-07-05

2066 Discrimination Exposure and DNA Methylation of Stress-Related Genes in Latina Mothers

Santos, H. P.; Nephew, B. C.; Bhattacharya, A.; Tan, X.; Smith, L.; Alyamani, R.; Martin, E. M.; Perreira, K.; Fry, R. C.; Murgatroyd, C.

10.1101/306027 — genomics — Posted on 2018-07-05

2067 SATurn: A modular bioinformatics framework for the design of robust maintainable web-based and standalone applications

Damerell, D.; Strain-Damerell, C.; Garsot, S.; Joyce, S.; Barrett, P.; Marsden, B.

10.1101/313619 — bioinformatics — Posted on 2018-07-05

2068 Fast trial-by-trial fronto-parietal cortical dynamics of conflict detection and context updating in a flanker task

Brydges, C. R.; Barcelo, F.; Nguyen, A. T.; Fox, A. M.

10.1101/336958 — neuroscience — Posted on 2018-07-05

2069 A Rigorous Interlaboratory Examination of the Need to Confirm NGS-Detected Variants by an Orthogonal Method in Clinical Genetic Testing

Lincoln, S. E.; Truty, R.; Lin, C.-F.; Zook, J.; Paul, J.; Ramey, V.; Salit, M.; Rehm, H.; Nussbaum, R.; Lebo, M.

10.1101/335950 — genetics — Posted on 2018-07-05

2070 Functional instability allows access to DNA in longer Transcription Activator-Like Effector (TALE) arrays.

Geiger-Schuller, K.; Mitra, J.; Ha, T.; Barrick, D.

10.1101/319749 — biophysics — Posted on 2018-07-05

2071 Illuminating women’s hidden contribution to the foundation of theoretical population genetics

Dung, S.; Lopez, A.; Lopez Barragan, E.; Reyes, R.-J.; Thu, R.; Castellanos, E.; Catalan, F.; Huerta Sanchez, E.; Rohlfs, R. V.

10.1101/360933 — scientific communication and education — Posted on 2018-07-05

2072 Architecture and organization of mouse posterior parietal cortex relative to extrastriate areas

Hovde, K.; Gianatti, M.; Witter, M. P.; Whitlock, J. R.

10.1101/361832 — neuroscience — Posted on 2018-07-05

2073 AccuNGS: detecting ultra-rare variants in viruses from clinical samples

Gelbart, M.; Harari, S.; Ben-Ari, Y.; Kustin, T.; Meir, M.; Miller, D.; Mor, O.; Stern, A.

10.1101/349498 — bioinformatics — Posted on 2018-07-05

2074 A new model explaining the origin of different topologies in interaction networks

Pinheiro, R. B. P.; Felix, G. M. F.; Dormann, C. F.; Mello, M. A. R.

10.1101/362871 — ecology — Posted on 2018-07-05

Choy, C. T.; Wong, C. H.; Chan, S. L.

10.1101/362848 — cancer biology — Posted on 2018-07-05

2076 McImpute: Matrix completion based imputation for single cell RNA-seq data

Mongia, A.; Sengupta, D.; Majumdar, A.

10.1101/361980 — bioinformatics — Posted on 2018-07-05

2077 Genetic mapping in Diversity Outbred mice identifies a Trpa1 variant influencing late phase formalin response

Recla, J. M.; Bubier, J. A.; Gatti, D. M.; Ryan, J. L.; Long, K. H.; Robledo, R. F.; Glidden, N.; Hou, G.; Churchill, G. A.; Maser, R. S.; Zhang, Z.-w.; Young, E. E.; Chesler, E. J.; Bult, C. J.

10.1101/362855 — bioinformatics — Posted on 2018-07-05

2078 Excretion initiates walking in the cricket Gryllus bimaculatus

Naniwa, K.; Sugimoto, Y.; Osuka, K.; Aonuma, H.

10.1101/362723 — animal behavior and cognition — Posted on 2018-07-05

2079 Redesign of an Undergraduate General Microbiology Lab to Include Authentic Discovery-Driven Research on Cucumber Fermentations

Greenstein, J.; Ford, B.; Gove, S.; Breidt, F.; Lee, A.; Taveirne, M. E.

10.1101/356261 — scientific communication and education — Posted on 2018-07-05

2080 Sensing Plant Physiology and Environmental Stress by Automatically Tracking Fj and Fi Features in PSII Chlorophyll Fluorescence Induction

Xia, Q.; Tan, J.; Cheng, S.; Jiang, Y.; Guo, Y.

10.1101/362939 — plant biology — Posted on 2018-07-05

2081 Scarification of Exotic and Indigenous Plant Seeds in Nigeria: Effect on Dormancy and Germination

Amodu, E.; Osuolale, O.

10.1101/354993 — plant biology — Posted on 2018-07-05

2082 Heliaphen, an outdoor high-throughput phenotyping platform designed to integrate genetics and crop modeling

Gosseau, F.; Blanchet, N.; Vares, D.; Burger, P.; Campergue, D.; Colombet, C.; Gody, L.; Lievain, J.-F.; Mangin, B.; Tison, G.; Vincourt, P.; Casadebaig, P.; Langlade, N.

10.1101/362715 — plant biology — Posted on 2018-07-05

2083 Triazole ureas covalently bind to strigolactone receptors and regulate signaling

Nakamura, H.; Hirabayashi, K.; Miyakawa, T.; Kikuzato, K.; Hu, W.; Xu, Y.; Jiang, K.; Takahashi, I.; Dohmae, N.; Tanokura, M.; Asami, T.

10.1101/362830 — plant biology — Posted on 2018-07-05

2084 Feedforward and feedback control share an internal model of the arm’s dynamics

Maeda, R. S. S.; Cluff, T.; Gribble, P. L.; Pruszynski, J. A.

10.1101/362699 — neuroscience — Posted on 2018-07-05

2085 Perceptual and memory neural processes underlie short and long-term non-reinforced behavioral change

Botvinik-Nezer, R.; Salomon, T.; Schonberg, T.

10.1101/363044 — neuroscience — Posted on 2018-07-05

2086 Evaluation of strategies for the assembly of diverse bacterial genomes using MinION long-read sequencing

Goldstein, S.; Beka, L.; Graf, J.; Klassen, J.

10.1101/362673 — genomics — Posted on 2018-07-05

2087 Why mediation analysis trumps Mendelian randomization in population epigenomics studies of the Dutch Famine

Tobi, E. W.; van Zwet, E. W.; Lumey, L.; Heijmans, B. T.

10.1101/362392 — genomics — Posted on 2018-07-05

2088 Complex patterns of sex-biased demography in canines

Phung, T. N.; Wayne, R. K.; Wilson Sayres, M. A.; Lohmueller, K. E.

10.1101/362731 — evolutionary biology — Posted on 2018-07-05

2089 Modulation of corneal tissue mechanics influences epithelial cell phenotype

Gouveia, R. M.; Lepert, G.; Gupta, S.; Mohan, R. R.; Paterson, C.; Connon, C. J.

10.1101/362236 — cell biology — Posted on 2018-07-05

2090 DNMT3A-NPM1 mutated acute myeloid leukaemia shows sensitivity to a PARP1 inhibitor combined with daunorubicin in an in vitro model

Gafencu, G. A.; Pileczki, V.; Jurj, A.; Magdo, L.; Selicean, C.; Ola, R.; Ghiaur, G.; Berindan-Neagoe, I.; Tomuleasa, C.

10.1101/362103 — cancer biology — Posted on 2018-07-05

2091 An open-source k-mer based machine learning tool for fast and accurate subtyping of HIV-1 genomes

Solis-Reyes, S.; Avino, M.; Poon, A.; Kari, L.

10.1101/362780 — bioinformatics — Posted on 2018-07-05

2092 Doppler-Based Algorithm for Mapping Cardiac Rotors by Induced Temperature Perturbations

Malki, G.; Barnea, O.; Tuller, T.

10.1101/362897 — bioengineering — Posted on 2018-07-05

2093 Searching for structure in collective systems

Twomey, C. R.; Hartnett, A. T.; Grobis, M. M.; Romanczuk, P.

10.1101/362681 — animal behavior and cognition — Posted on 2018-07-05

2094 Building mathematical models of biological systems with modelbase, a Python package for semi-automatic ODE assembly and construction of isotope-specific models

Ebenhoeh, O.; van Aalst, M.; Saadat, N. P.; Nies, T.; Matuszynska, A.

10.1101/362954 — systems biology — Posted on 2018-07-05

2095 The contrasting response to drought and waterlogging is underpinned by divergent DNA methylation programs associated with gene expression in sesame

Dossa, K.; Mmadi, M. A.; Zhou, R.; Zhou, Q.; Yang, M.; Cisse, N.; Diouf, D.; Wang, L.; Zhang, X.

10.1101/362905 — plant biology — Posted on 2018-07-05

2096 An EDS1 EP-domain surface mediating timely transcriptional reprogramming of immunity genes

Bhandari, D. D.; Lapin, D.; Kracher, B.; vonBorn, P.; Bautor, J.; Niefind, K.; Parker, J. E.

10.1101/362921 — plant biology — Posted on 2018-07-05

2097 A toolbox for nodule development studies in chickpea: a hairy-root transformation protocol and an efficient laboratory strain of Mesorhizobium sp.

Mandal, D.; Sinharoy, S.

10.1101/362947 — plant biology — Posted on 2018-07-05

2098 Multivariate methods for testing hypotheses of temporal community dynamics

Buckley, H. L.; Day, N. J.; Case, B. S.; Lear, G.; Ellison, A. M.

10.1101/362822 — ecology — Posted on 2018-07-05

2099 MTA proteins act redundantly within the NuRD complex to ensure fidelity of ES cell lineage commitment

Burgold, T.; Barber, M.; Kloet, S.; Cramard, J.; Gharbi, S.; Floyd, R.; Kinoshita, M.; Ralser, M.; Vermeulen, M.; Reynolds, N.; Dietmann, S.; Hendrich, B.

10.1101/362988 — developmental biology — Posted on 2018-07-05

2100 Transposon silencing in the Drosophila female germline ensures genome stability in progeny embryos

Ephrussi, A.; Durdevic, Z.; Pillai, R. S.

10.1101/363028 — developmental biology — Posted on 2018-07-05

2101 Notch signalling patterns retinal composition by regulating atoh7 during post-embryonic growth

Perez Saturnino, A.; Lust, K.; Wittbrodt, J.

10.1101/363010 — developmental biology — Posted on 2018-07-05

2102 Cardiac Spiral Wave Drifting Due to Spatial Temperature Gradients: A Numerical Study

Malki, G.; Zlochiver, S.

10.1101/362913 — bioengineering — Posted on 2018-07-05

2103 Modular microtissues for the regeneration of functional bone in large defects

Annamalai, R. T.; Hong, X.; Schott, N.; Tiruchinapally, G.; Levi, B.; Stegemann, J.

10.1101/362772 — bioengineering — Posted on 2018-07-05

2104 Cotranslational folding of a pentarepeat β-helix protein

Notari, L.; Martinez-Carranza, M.; Farias-Rico, J. A.; Stenmark, P.; Von Heijne, G.

10.1101/255810 — molecular biology — Posted on 2018-07-05

2105 Genome-wide analysis of RNA sites consistently edited in human blood reveals interactions with mRNA processing genes and suggests correlations with biological and drug-related variables.

Giacopuzzi, E.; Gennarelli, M.; Sacco, C.; Magri, C.; Barbon, A.

10.1101/254045 — genomics — Posted on 2018-07-05

2106 Phenomic selection: a low-cost and high-throughput method based on indirect predictions. Proof of concept on wheat and poplar.

Rincent, R.; Charpentier, J.-P.; Faivre-Rampant, P.; Paux, E.; Le Gouis, J.; Bastien, C.; Segura, V.

10.1101/302117 — genetics — Posted on 2018-07-05

2107 Attention periodically samples competing stimuli during binocular rivalry

Davidson, M. J.; Alais, D.; van Boxtel, J. J. A.; Tsuchiya, N.

10.1101/253740 — neuroscience — Posted on 2018-07-05

2108 Human Herpes Virus 6 (HHV-6) - Pathogen or Passenger? A pilot study of clinical laboratory data and next generation sequencing

Sharp, C.; Golubchik, T.; Gregory, W. F.; McNaughton, A.; Gow, N.; Selvaratnam, M.; Mirea, A.; Foster, D.; Andersson, M.; Klenerman, P.; Jeffery, K.; Matthews, P.

10.1101/236083 — microbiology — Posted on 2018-07-05

2109 Biophysical models reveal the relative importance of transporter proteins and impermeant anions in chloride homeostasis

Düsterwald, K. M.; Currin, C. B.; Burman, R. J.; Akerman, C. J.; Kay, A. R.; Raimondo, J. V.

10.1101/216150 — neuroscience — Posted on 2018-07-05

2110 Cell-autonomous regulation of astrocyte activation by the circadian clock protein BMAL1

Lananna, B. V.; Nadarajah, C. J.; Izumo, M.; Cedeno, M. R.; Xiong, D. D.; Dimitry, J.; Tso, C. F.; McKee, C. A.; Griffin, P.; Sheehan, P. W.; Haspel, J. A.; Barres, B. A.; Liddelow, S. A.; Takahashi, J. S.; Karatsoreos, I. N.; Musiek, E. S.

10.1101/362814 — neuroscience — Posted on 2018-07-05

2111 Characterization of Telomeric Repeat-Containing RNA (TERRA) localization and protein interactions in Primordial Germ Cells of the mouse

Brieno-Enriquez, M. A.; Moak, S. L.; Abud-Flores, A.; Cohen, P. E.

10.1101/362632 — genetics — Posted on 2018-07-05

2112 Evidence for secondary-variant genetic burden and non-random distribution across biological modules in a recessive ciliopathy

Kousi, M.; Soylemez, O.; Ozanturk, A.; Akle, S.; Jungreis, I.; Muller, J.; Cassa, C. A.; Brand, H.; Rosenfeld, J. A.; Wolf, M. Y.; Sadeghpour, A.; McFadden, K.; Lewis, R. A.; Talkowski, M. E.; Dollfus, H.; Kellis, M.; Davis, E. E.; Sunyaev, S. R.; Katsanis, N.

10.1101/362707 — genetics — Posted on 2018-07-05

2113 Therapeutic gene editing in hematopoietic progenitor cells from a mouse model of Fanconi anemia

Pino-Barrio, M.-J.; Gimenez, Y.; Villanueva, M.; Hildenbeutel, M.; Sanchez-Dominguez, R.; Rodriguez-Perales, S.; Pujol, R.; Surralles, J.; Rio, P.; Cathomen, T.; Mussolino, C.; Bueren, J. A.; Navarro, S.

10.1101/362251 — molecular biology — Posted on 2018-07-05

2114 Expansion of the fatty acyl reductase gene family shaped pheromone communication in Hymenoptera

Tupec, M.; Bucek, A.; Vogel, H.; Janousek, V.; Prchalova, D.; Kindl, J.; Pavlickova, T.; Wenzelova, P.; Jahn, U.; Valterova, I.; Pichova, I.

10.1101/362509 — evolutionary biology — Posted on 2018-07-05

2115 Neural signatures of detours, shortcuts and back-tracking during navigation

Patai, E. Z.; Javadi, A.-H.; Margois, A.; Tan, H.-R.; Kumaran, D.; Nardini, M.; Penny, W.; Duzel, E.; Dayan, P.; Spiers, H. J.

10.1101/362319 — neuroscience — Posted on 2018-07-04

2116 Infant and adult brains are coupled to the dynamics of natural communication

Piazza, E. A.; Hasenfratz, L.; Hasson, U.; Lew-Williams, C.

10.1101/359810 — neuroscience — Posted on 2018-07-04

2117 What you see depends on what you hear: temporal averaging and crossmodal integration

Chen, L.; Zhou, X.; Müller, H. J.; Shi, Z.

10.1101/362665 — neuroscience — Posted on 2018-07-04

2118 Fst between archaic and present-day samples

Ortega-Del Vecchyo, D.; Slatkin, M.

10.1101/362053 — evolutionary biology — Posted on 2018-07-04

2119 The impacts of landscape composition, marginality and climatic stability on the patterns of endemism of Cerrado woody plants

Vidal, J. d. D.; de Souza, A. P.; Koch, I.

10.1101/362475 — ecology — Posted on 2018-07-04

2120 Predicting Functional Associations using Flanking Genes (FlaGs)

Saha, C. K.; Sanchez Pires, R.; Brolin, H.; Atkinson, G. C.

10.1101/362095 — bioinformatics — Posted on 2018-07-04

2121 Population growth affects intrinsic and extrinsic noise in gene expression

Thomas, P.

10.1101/362368 — systems biology — Posted on 2018-07-04

2122 Decoupling of heterosis and inbreeding variances is evidenced in yeast’s life-history and proteomic traits

Petrizzelli, M.; de Vienne, D.; Dillmann, C.

10.1101/362418 — systems biology — Posted on 2018-07-04

2123 Flow stimuli reveal ecologically-appropriate responses in mouse visual cortex

Dyballa, L.; Hoseini, M. S.; Dadarlat, M. C.; Zucker, S. W.; Stryker, M. P.

10.1101/362459 — neuroscience — Posted on 2018-07-04

2124 Role of Cnot6l in maternal mRNA turnover

Horvat, F.; Fulka, H.; Jankele, R.; Malik, R.; Ma, J.; Solcova, K.; Sedlacek, R.; Vlahovicek, K.; Schultz, R. M.; Svoboda, P.

10.1101/362145 — molecular biology — Posted on 2018-07-04

2125 Integration of Dominance and Marker x Environment Interactions into Maize Genomic Prediction Models

Ferrao, L. F. V.; Marinho, C. D.; Munoz, P. R.; Resende, M. F.

10.1101/362608 — genomics — Posted on 2018-07-04

2126 Super-Mendelian inheritance mediated by CRISPR/Cas9 in the female mouse germline

Grunwald, H. A.; Gantz, V. M.; Poplawski, G.; Xu, X.-r. S.; Bier, E.; Cooper, K. L.

10.1101/362558 — genetics — Posted on 2018-07-04

2127 The limits of long-term selection against Neandertal introgression

Petr, M.; Pääbo, S.; Kelso, J.; Vernot, B.

10.1101/362566 — evolutionary biology — Posted on 2018-07-04

2128 Life history evolution and phenotypic plasticity in parasitic eyebrights (Euphrasia, Orobanchaceae)

Twyford, A. D.; Frachon, N.; Wong, E. L. Y.; Metherell, C.; Brown, M. R.

10.1101/362400 — evolutionary biology — Posted on 2018-07-04

2129 The Growth Hormone Secretagogue Receptor, Ghrelin and Biochemical Signaling Molecules in Human Heart Failure

Sullivan, R.; Randhawa, V.; Stokes, A.; Wu, D.; Lalonde, T.; Kiaii, B.; Luyt, L.; Wisenberg, G.; Dhanvantari, S.

10.1101/362525 — cell biology — Posted on 2018-07-04

2130 Probabilistic ancestry maps: a method to assess and visualize population substructures in genetics

Gaspar, H. A.; Breen, G.

10.1101/362343 — bioinformatics — Posted on 2018-07-04

2131 Assessing distinct patterns of cognitive aging using tissue-specific brain age prediction based on diffusion tensor imaging and brain morphometry

Richard, G.; Kolskaar, K.; Sanders, A.-M.; Kaufmann, T.; Petersen, A.; Doan, N. T.; Monereo Sanchez, J.; Alnaes, D.; Ulrichsen, K. M.; Solberg Dorum, E.; Andreassen, O.; Nordvik, J. E.; Tjelta Westlye, L.

10.1101/313015 — neuroscience — Posted on 2018-07-04

2132 Nano-particles from Chaetomium against Rice Blast

Song, J. J.; Soytong, K.

10.1101/339283 — microbiology — Posted on 2018-07-04

2133 Genetic insight into zinc and antimicrobial toxicity uncovers a glycerol phosphate modification on streptococcal rhamnose polysaccharides

Edgar, R. J.; van Hensbergen, V. P.; Ruda, A.; Turner, A. G.; Deng, P.; Le Breton, Y.; El-Sayed, N. M.; Belew, A. T.; McIver, K. S.; McEwan, A. G.; Morris, A. J.; Lambeau, G.; Walker, M. J.; Rush, J. S.; Korotkov, K. V.; Widmalm, G.; van Sorge, N. M.; Korotkova, N.

10.1101/337519 — microbiology — Posted on 2018-07-04

2134 Blimp-1 mediates tracheal lumen maturation in Drosophila melanogaster

Ozturk-Colak, A.; Stephan-Otto Attolini, C.; Casanova, J.; Araujo, S. J.

10.1101/273151 — developmental biology — Posted on 2018-07-04

2135 Super-resolution fight club: A broad assessment of 2D & 3D single-molecule localization microscopy software

Sage, D.; Pham, T.-A.; Babcock, H.; Lukes, T.; Pengo, T.; Velmurugan, R.; Herbert, A.; Agarwal, A.; Colabrese, S.; Wheeler, A.; Archetti, A.; Rieger, B.; Ober, R.; Hagen, G. M.; Sibarita, J.-B.; Ries, J.; Henriques, R.; Unser, M.; Holden, S.

10.1101/362517 — biophysics — Posted on 2018-07-04

2136 Mean-field model for the dynamics of conductance-based networks of excitatory and inhibitory spiking neurons with adaptation

di Volo, M.; Romagnoni, A.; Capone, C.; Destexhe, A.

10.1101/352393 — neuroscience — Posted on 2018-07-04

2137 A signature of cognitive deficits and brain atrophy that is highly predictive of progression to Alzheimer’s dementia

Tam, A.; Dansereau, C.; Iturria-Medina, Y.; Urchs, S.; Orban, P.; Breitner, J.; Bellec, P.; Alzheimer's Disease Neuroimaging Initiative,

10.1101/352344 — neuroscience — Posted on 2018-07-04

2138 The hydrolase LpqI primes mycobacterial peptidoglycan recycling.

Moynihan, P. J.; Cadby, I. T.; Veerapen, N.; Jankute, M.; Crosatti, M.; Mukamolova, G.; Lovering, A. L.; Besra, G. S.

10.1101/312876 — microbiology — Posted on 2018-07-04

2139 Localization and protein-protein interaction of protein kinase CK2 suggest a chaperone-like activity is integral to its function in M. oryzae.

Zhang, L.; Zhang, D.; Chen, Y.; Ye, W.; Lin, Q.; Lu, G.; Ebbole, D. J.; Olsson, S.; Wang, Z.

10.1101/323816 — cell biology — Posted on 2018-07-04

2140 In-depth investigation of the species problem and taxonomic status of marbled crayfish, the first asexual decapod crustacean

Vogt, G.; Dorn, N. J.; Pfeiffer, M.; Lukhaup, C.; Williams, B. W.; Schulz, R.; Schrimpf, A.

10.1101/356170 — zoology — Posted on 2018-07-04

2141 Rns regulates nonpilus adhesin EtpA in human Enterotoxigenic E.coli (ETEC)

T P, V. M.; ULETT, G. C.; SAKELLARIS, H.

10.1101/362178 — microbiology — Posted on 2018-07-04

2142 SCMarker: ab initio marker selection for single cell transcriptome profiling

Wang, F.; Seth, T.; Liang, S.; Navin, N.; Chen, K.

10.1101/356634 — bioinformatics — Posted on 2018-07-04

2143 Quantitative mapping of protein-peptide affinity landscapes using spectrally encoded beads

Nguyen, H. Q.; Roy, J.; Harink, B.; Damle, N.; Baxter, B.; Brower, K.; Kortemme, T.; Thorn, K.; Cyert, M.; Fordyce, P. M.

10.1101/306779 — bioengineering — Posted on 2018-07-04

2144 Capturing auxin response factors syntax using DNA binding models

Stigliani, A.; Martin-Arevalillo, R.; Lucas, J.; Bessy, A.; Vinos-Poyo, T.; Mironova, V.; Vernoux, T.; Dumas, R.; Parcy, F.

10.1101/359182 — plant biology — Posted on 2018-07-04

2145 Triggering mechanisms for motor actions: A mini meta-analysis and experimental data.

Leow, L.-A.; Uchida, A.; Egberts, J.-L.; Riek, S.; Lipp, O.; Tresilian, J.; Marinovic, W.

10.1101/360297 — neuroscience — Posted on 2018-07-04

2146 Intracellular calcium dysregulation precedes muscle decline in C. elegans modeling Duchenne muscular dystrophy

10.1101/360388 — molecular biology — Posted on 2018-07-04

2147 NanoAmpli-Seq: A workflow for amplicon sequencing for mixed microbial communities on the nanopore sequencing platform

Calus, S. T.; Ijaz, U. Z.; Pinto, A. J.

10.1101/244517 — microbiology — Posted on 2018-07-04

2148 On the Subspace Invariance of Population Responses

Tring, E.; Ringach, D.

10.1101/361568 — neuroscience — Posted on 2018-07-04

2149 Spatiotemporal Analysis of Category and Target-related Information Processing in the Brain during Object Detection

Karimi-Rouzbahani, H.; Vahab, E.; Ebrahimpour, R.; Menhaj, M. B.

10.1101/361642 — neuroscience — Posted on 2018-07-04

2150 Excitable RhoA dynamics drive pulsed contractions in the early C. elegans embryo.

Michaux, J. B.; Robin, F. B.; McFadden, W. M.; Munro, E. M.

10.1101/076356 — cell biology — Posted on 2018-07-04

2151 Plan-based generalization shapes local implicit adaptation to opposing visuomotor transformations.

Schween, R.; Taylor, J. A.; Hegele, M.

10.1101/361634 — neuroscience — Posted on 2018-07-04

2152 Quantifying metacognitive thresholds using signal-detection theory

Sherman, M. T.; Seth, A. K.; Barrett, A. B.

10.1101/361543 — neuroscience — Posted on 2018-07-04

2153 A migration-associated supergene reveals loss of biocomplexity in Atlantic cod

Kess, T.; Bentzen, P.; Lehnert, S. J.; Sylvester, E. V. A.; Lien, S.; Kent, M. P.; Sinclair-Waters, M.; Morris, C.; Regular, P.; Fairweather, R.; Bradbury, I. R.

10.1101/361691 — genomics — Posted on 2018-07-04

2154 Inference of Chromosome-length Haplotypes Using Genomic Data of Three to Five Single Gametes

Li, R.; Qu, H.; Chen, J.; Wang, S.; Chater, J. M.; Zhang, L.; Wei, J.; Zhang, Y.; Xu, C.; Zhong, W.-D.; Zhu, J.; Lu, J.; Ma, R.; Ferrante, S. P.; Roose, M. L.; Jia, Z.

10.1101/361873 — bioinformatics — Posted on 2018-07-04

2155 Progression of chronic kidney disease in African American with type 2 diabetes mellitus using topology learning in electronic medical records

Wang, L.; Zheng, X.; Huang, L. S.; Xu, J.; Hsu, F.-C.; Chen, S.-H.; Ng, M. C. Y.; Bowden, D. W.; Freedman, B. I.; Su, J.

10.1101/361956 — bioinformatics — Posted on 2018-07-04

2156 Cognitive self-regulation influences pain-related physiology

Matthewson, G.; Woo, C.-W.; Reddan, M. C.; Wager, T. D.

10.1101/361519 — neuroscience — Posted on 2018-07-04

2157 Beauty-in-averageness and its contextual modulations: A Bayesian statistical account

Ryali, C.; Yu, A. J.

10.1101/360651 — animal behavior and cognition — Posted on 2018-07-04

2158 The unexpected provenance of components in eukaryotic nucleotide-excision-repair and kinetoplast DNA-dynamics from bacterial mobile elements

Krishnan, A.; Burroughs, A. M.; Iyer, L.; Aravind, L.

10.1101/361121 — genomics — Posted on 2018-07-04

2159 Most sleep does not serve a vital function. Evidence from Drosophila melanogaster

Geissmann, Q.; Beckwith, E. J.; Gilestro, G. F.

10.1101/361667 — neuroscience — Posted on 2018-07-04

2160 HIV-1 vaccine design through minimizing envelope metastability

He, L.; Kumar, S.; Allen, J. J.; Huang, D.; Lin, X.; Mann, C. J.; Saye-Francisco, K. L.; Copps, J.; Sarkar, A.; Blizard, G. S.; Ozorowski, G.; Sok, D.; Crispin, M.; Ward, A. B.; Nemazee, D.; Burton, D. R.; Wilson, I. A.; Zhu, J.

10.1101/361931 — microbiology — Posted on 2018-07-04

2161 Molecular basis for the acid initiated uncoating of human enterovirus D68

Liu, Y.; Sheng, J.; Rossmann, M.

10.1101/361030 — microbiology — Posted on 2018-07-04

2162 Decreased IgG core fucosylation, a player in antibody-dependent cell-mediated cytotoxicity, is associated with autoimmune thyroid diseases

Martin, T. C.; Simurina, M.; Zabczynska, M.; Martinic Kavur, M.; Rydlewska, M.; Pezer, M.; Kozlowska, K.; Burri, A.; Vilaj, M.; Turek-Jabrocka, R.; Krnjajic-Tadijanovic, M.; Trofimiuk-Muldner, M.; Litynska, A.; Hubalewska-Dydejczyk, A.; Trbojevic-Akmacic, I.; Mun Lim, E.; Walsh, J. P.; Pochec, E.; Spector, T. D.; Willson, S. G.; Lauc, G.

10.1101/362004 — immunology — Posted on 2018-07-04

2163 Sequencing of Panax notoginseng genome reveals genes involved in disease resistance and ginsenoside biosynthesis

10.1101/362046 — genomics — Posted on 2018-07-04

2164 Seasonal changes in diet and toxicity in the Climbing Mantella frog (Mantella laevigata)

Moskowitz, N. A.; Roland, A. B.; Fischer, E. K.; Ranaivorazo, N.; Vidoudez, C.; Aguilar, M. T.; Caldera, S. M.; Chea, J.; Cristus, M. G.; Crowdis, J. P.; DeMessie, B.; Desjardins-Park, C. R.; Effenberger, A. H.; Flores, F.; Giles, M.; He, E. Y.; Izmaylov, N. S.; Lee, C. C.; Pagel, N. A.; Phu, K. K.; Rosen, L. U.; Seda, D. A.; Shen, Y.; Vargas, S.; Weiss, H. S.; Murray, A. W.; Abebe, E.; Trauger, S. A.; Vences, M.; O'Connell, L. A.

10.1101/361998 — ecology — Posted on 2018-07-04

2165 Specific histone modifications associate with alternative exon selection during mammalian development

Hu, Q.; Greene, C.; Heller, E.

10.1101/361816 — bioinformatics — Posted on 2018-07-04

2166 Structural analysis of the interaction between the bacterial cell division proteins FtsQ and FtsB

Kureisaite-Ciziene, D.; Varadajan, A.; McLaughlin, S. H.; Glas, M.; Silva, A. M.; Luirink, R.; Mueller, C.; den Blaauwen, T.; Grossmann, T. N.; Luirink, J.; Lowe, J.

10.1101/362335 — microbiology — Posted on 2018-07-04

2167 Gorilla APOBEC3 restricts SIVcpz and influences lentiviral evolution in great ape cross-species transmissions

Nakano, Y.; Yamamoto, K.; Soper, A.; Kumata, R.; Aso, H.; Misawa, N.; Konno, Y.; Kimura, I.; Nagaoka, S.; Juarez-Fernandez, G.; Ito, J.; Ikeda, T.; Koyanagi, Y.; Harris, R. S.; Sato, K.

10.1101/362079 — microbiology — Posted on 2018-07-04

2168 Mitochondrial genetics of exceptional longevity in multigeneration matrilineages

Kerber, R. A.; O'Brien, E.; Munger, R.; Smith, K. R.; Cawthon, R. M.

10.1101/361899 — genetics — Posted on 2018-07-04

2169 The complex genetic architecture of shoot growth natural variation in Arabidopsis thaliana

Marchadier, E.; Hanemian, M.; Tisne, S.; Bach, L.; Bazakos, C.; Gilbault, E.; Haddadi, P.; Virlouvet, L.; Loudet, O.

10.1101/354738 — genetics — Posted on 2018-07-04

2170 Discovery of biased orientation of human DNA motif sequences affecting enhancer-promoter interactions and transcription of genes

Osato, N.

10.1101/290825 — bioinformatics — Posted on 2018-07-04

2171 Micom: metagenome-scale modeling to infer metabolicinteractions in the microbiota.

Diener, C.; Resendis-Antonio, O.

10.1101/361907 — systems biology — Posted on 2018-07-04

2172 Start-Stop Assembly: a functionally scarless DNA assembly system optimised for metabolic engineering.

Taylor, G. M.; Mordaka, P. M.; Heap, J. T.

10.1101/361626 — synthetic biology — Posted on 2018-07-04

2173 Effect of Drought On The Germination of Maize Using PEG (Polyethylene Glycol) As A Substitute For Drought Screening

Ahmad, I. A.; Din, K. U.; Dar, Z. a.; Sofi, P. A.; Lone, A. A.

10.1101/362160 — physiology — Posted on 2018-07-04

2174 Translating genotype data of 44,000 biobank participants into clinical pharmacogenetic recommendations: challenges and solutions

Reisberg, S.; Krebs, K.; Kals, M.; Magi, R.; Metsalu, K.; Lauschke, V. M.; Vilo, J.; Milani, L.

10.1101/356204 — pharmacology and toxicology — Posted on 2018-07-04

2175 Consistent visuomotor adaptations and generalizations can be achieved through different rotations of robust motor modules

De Marchis, C.; Di Somma, J.; Zych, M.; Conforto, S.; Severini, G.

10.1101/362228 — neuroscience — Posted on 2018-07-04

2176 Voluntary control of visual appearance

Harrison, W. J.; Rideaux, R.

10.1101/219279 — neuroscience — Posted on 2018-07-04

2177 An immune-CNS axis activates remote hippocampal stem cells following Spinal Transection Injury

Dehler, S.; Lou, P.-K.; Skabkin, M.; Laudenklos, S.; Neumann, A.; Martin-Villalba, A.

10.1101/361535 — neuroscience — Posted on 2018-07-04

2178 Rns regulates nonpilus adhesin EtpA in human Enterotoxigenic E.coli (ETEC)

T P, V. M.; ULETT, G. C.; SAKELLARIS, H.

10.1101/362178 — microbiology — Posted on 2018-07-04

2179 Protein Deacetylase CobB Interplays with c-di-GMP

Xu, Z.; Zhang, H.-n.; Zhang, X.; Liu, C.; Jiang, H.; Wu, F.; Qian, L.; Czajkowsky, D.; Guo, S.; Bi, L.; Wang, S.; Li, H.; Tan, M.; Feng, L.; Hou, J.; Tao, S.-c.

10.1101/362293 — microbiology — Posted on 2018-07-04

2180 Modulation of Secretory Lysosomes During NK Cell Education Leads to Accumulation of Granzyme B and Enhanced Functional Potential

Goodridge, J. P.; Jacobs, B.; Satersmoen, M. L.; Clement, D.; Clancy, T.; Skarpen, E.; Brech, A.; Landskron, J.; Grimm, C.; Pfefferle, A.; Meza-Zepeda, L.; Lorenz, S.; Wiiger, M. T.; Louch, W. E.; Ask, E. H.; Liu, L. L.; Oei, V. Y. S.; Kjallquist, U.; Linnarsson, S.; Patel, S.; Tasken, K.; Stenmark, H.; Malmberg, K.-J.

10.1101/305862 — immunology — Posted on 2018-07-04

2181 ClinPhen extracts and prioritizes patientphenotypes directly from medical records to accelerate genetic disease diagnosis

Deisseroth, C. A.; Birgmeier, J.; Bodle, E. E.; Bernstein, J. A.; Bejerano, G.

10.1101/362111 — genomics — Posted on 2018-07-04

2182 Monochrome multiplex qPCR of 18S and 5.8S human rDNA

Ligerman, C. B.; Cawthon, R. M.

10.1101/361840 — genomics — Posted on 2018-07-04

2183 The molecular basis of genetic interaction diversity in a metabolic pathway

Kemble, H. E.; Eisenhauer, C.; Couce, A.; Chapron, A.; Magnan, M.; Gautier, G.; Le Nagard, H.; Nghe, P.; Tenaillon, O.

10.1101/362327 — genetics — Posted on 2018-07-04

2184 Multiple independent adaptations to different ranges of host plants indicate high adaptability despite clonal reproduction in the nematode pest Meloidogyne incognita

Koutsovoulos, G.; Marques, E.; Arguel, M.-J.; Machado, A. C.; Carneiro, R. M.; Castagnone-Sereno, P.; Danchin, E. G.; Albuquerque, E. V.

10.1101/362129 — evolutionary biology — Posted on 2018-07-04

2185 A Universal Probe Set for Targeted Sequencing of 353 Nuclear Genes from Any Flowering Plant Designed Using k-medoids Clustering

Johnson, M.; Pokorny, L.; Dodsworth, S.; Botigue, L. R.; Cowan, R. S.; Devault, A.; Eiserhardt, W. L.; Epitawalage, N.; Forest, F.; Kim, J. T.; Leebens-Mack, J. H.; Leitch, I. J.; Maurin, O.; Soltis, D. E.; Soltis, P. S.; Wong, G. K.-S.; Baker, W. J.; Wickett, N.

10.1101/361618 — evolutionary biology — Posted on 2018-07-04

2186 How do wind speed, release height, seed morphology interact to determine seed dispersal trajectory of Calligonum (Polygonaceae) species

Zhou, Q.; Liu, Z.; Xin, Z.; Qian, J.; Wang, Y.; Liang, W.; Qin, X.; Zhao, Y.; Li, X.; Cui, X.; Liu, M.

10.1101/362434 — ecology — Posted on 2018-07-04

2187 Disentangling bacterial invasiveness from lethality in an experimental host-pathogen system

Biancalani, T.; Gore, J.

10.1101/361584 — ecology — Posted on 2018-07-04

2188 Modeling Protein-based Hydrogels under Force

Shmilovich, K.; Popa, I.

10.1101/361592 — biophysics — Posted on 2018-07-04

2189 Fluorescence Multiplexing with Spectral Imaging and Combinatorics

Holzapfel, H. Y.; Stern, A. D.; Bouhaddou, M.; Anglin, C. M.; Putur, D.; Comer, S.; Birtwistle, M. R.

10.1101/361790 — biochemistry — Posted on 2018-07-04

2190 Constructing predictive cancer systems biology models

Rohrs, J. A.; Makaryan, S. Z.; Finley, S. D.

10.1101/360800 — systems biology — Posted on 2018-07-04

2191 The Enzymes that beyond Non-Oxidative Glycolysis

Xu, Z.; Wu, Q.; Zhu, D.

10.1101/362269 — synthetic biology — Posted on 2018-07-04

2192 Lateral root priming synergystically arises from root growth and auxin transport dynamics

van den Berg, T.; ten Tusscher, K. H.

10.1101/361709 — plant biology — Posted on 2018-07-04

2193 Modulatory effect of Syzygium aromaticum and Pelargonium graveolens on oxidative stress and inflammation

Marmouzi, I.; El Mostafa, K.; Alami, R.; El Jemli, M.; Kharbach, M.; Mamouch, F.; Faridi, B.; Attar, A.; Cherrah, Y.; Faouzi, M. E. A.

10.1101/362426 — pharmacology and toxicology — Posted on 2018-07-04

2194 Unfold: An integrated toolbox for overlap correction, non-linear modeling, and regression-based EEG analysis

Ehinger, B. V.; Dimigen, O.

10.1101/360156 — neuroscience — Posted on 2018-07-04

2195 Changes in excitability and ion channel expression in neurons of the major pelvic ganglion in female type II diabetic mice

Gray, M.; Lett, K. M.; Garcia, V. B.; Kyi, C.; Pennington, K. A.; Schulz, L. C.; Schulz, D.

10.1101/360826 — neuroscience — Posted on 2018-07-04

2196 Homeostatic plasticity and external input shape neural network dynamics

Zierenberg, J.; Wilting, J.; Priesemann, V.

10.1101/362152 — neuroscience — Posted on 2018-07-04

2197 Genome location dictates the transcriptional response to sub-inhibitory concentrations of PolC-inhibitors in Clostridium difficile

van Eijk, E.; Boekhoud, I. M.; Kuijper, E. J.; Bos-Sanders, I. M. J. G.; Wright, G.; Smits, W. K.

10.1101/362137 — microbiology — Posted on 2018-07-04

2198 Drosophila DNA/RNA methyltransferase contributes to robust host defense in ageing animals by regulating sphingolipid metabolism

Abhyankar, V.; Kaduskar, B.; Kamat, S.; Deobagkar, D.; Ratnaparkhi, G. S.

10.1101/362012 — immunology — Posted on 2018-07-04

2199 Regulatory networks of gene expression in maize (Zea mays) under drought stress and re-watering

Cao, L.; Lu, X.; Zhang, P.; Ku, L.; Wang, G.; Yuan, Z.; Zhang, X.; Cui, J.; Han, J.; Liu, Y.; Cao, Y.; Wei, L.; Wang, T.

10.1101/361964 — genomics — Posted on 2018-07-04

2200 A zinc knuckle gene on the Y chromosome (zkY) determines sex in Atlantic cod (Gadus morhua)

Kirubakaran, T. G.; Andersen, O.; De Rosa, M. C.; Andersstuen, T.; Hallan, K.; Kent, M. P.; Lien, S.

10.1101/362376 — genetics — Posted on 2018-07-04

2201 Mate choice and gene expression signatures associated with nutritional adaptation in the medfly (Ceratitis capitata)

Nash, W. J.; Mohorianu, I.; Chapman, T.

10.1101/362210 — evolutionary biology — Posted on 2018-07-04

2202 Developing an automated iterative near-term forecasting system for an ecological study

White, E. P.; Yenni, G. M.; Taylor, S. D.; Christensen, E. M.; Bledsoe, E. K.; Simonis, J. L.; Ernest, S. K. M.

10.1101/268623 — ecology — Posted on 2018-07-04

2203 Uncertainty and exploration

Gershman, S. J.

10.1101/265504 — animal behavior and cognition — Posted on 2018-07-04

2204 Architecture and organization of mouse posterior parietal cortex relative to extrastriate areas

Hovde, K.; Gianatti, M.; Witter, M. P.; Whitlock, J. R.

10.1101/361832 — neuroscience — Posted on 2018-07-04

2205 Mitogen-Activated Protein Kinase-Dependent Fiber-Type Regulation in Skeletal Muscle

Boyer, J. G.; Song, T.; Lee, D.; Fu, X.; Sadayappan, S.; Molkentin, J. D.

10.1101/361600 — developmental biology — Posted on 2018-07-04

2206 Interface residues that drive allosteric transitions also control the assembly of L-lactate dehydrogenase

Thirumalai, D.; Chen, J.

10.1101/361550 — biophysics — Posted on 2018-07-04

2207 The effect of anti-IL-6 receptor antibody for the treatment of McH-lpr/lpr-RA1 mice that spontaneously developed ankylosing arthritis

Mori, Y.; Izumiyama, T.; Takeda, K.; Mori, N.; Mori, S.; Kodama, T.; Itoi, E.

10.1101/362194 — pathology — Posted on 2018-07-04

2208 Using Weibull accelerated failure time regression model to predict survival time and life expectancy

Liu, E.

10.1101/362186 — epidemiology — Posted on 2018-07-04

2209 Divergent Behavior Amid Convergent Evolution: A Case of Four Desert Rodents Learning to Respond to Known and Novel Vipers

Bleicher, S. S.; Kotelr, B. P.; Shalev, O.; Dixon, A.; Embar, K.; Brown, J. S.

10.1101/362202 — ecology — Posted on 2018-07-04

2210 Multiple infection of cells changes the dynamics of basic viral evolutionary processes

Wodarz, D.; Levy, D. N.; Komarova, N. L.

10.1101/361766 — evolutionary biology — Posted on 2018-07-03

2211 A cancer-associated polymorphism in ESCRT-III disrupts the abscission checkpoint and promotes genome instability

Sadler, J. B. A.; Wenzel, D. M.; Williams, L. K.; Guindo-Martinez, M.; Alam, S. L.; Mercader, J. M.; Torrents, D.; Ullman, K. S.; Sundquist, W. I.; Martin-Serrano, J.

10.1101/361659 — cell biology — Posted on 2018-07-03

2212 LiF-MS: Mapping unstructured peptide-protein interactions using Ligand-Footprinting Mass Spectrometry

Parker, B.; Goncz, E.; Krist, D. T.; Statsyuk, A.; Nesvizhskii, A. I.; Weiss, E.

10.1101/361857 — biochemistry — Posted on 2018-07-03

2213 Of puzzles and pavements: a quantitative exploration of leaf epidermal cell shape

Vofely, R. V.; Gallagher, J.; Pisano, G. D.; Bartlett, M.; Braybrook, S. A.

10.1101/361717 — plant biology — Posted on 2018-07-03

2214 RocS drives chromosome segregation and nucleoid occlusion in Streptococcus pneumoniae

Mercy, C.; Lavergne, J.-P.; Slager, J.; Ducret, A.; Garcia, P. S.; Noirot-Gros, M.-F.; Dubarry, N.; Nourikyan, J.; Veening, J.-W.; Grangeasse, C.

10.1101/359943 — microbiology — Posted on 2018-07-03

2215 Continual exit of human cutaneous resident memory CD4 T cells that seed distant skin sites

Klicznik, M. M.; Morawski, P. A.; Höllbacher, B.; Varkande, S.; Motley, S.; Rosenblum, M. D.; Duhen, T.; Campbell, D.; Gratz, I. K.

10.1101/361758 — immunology — Posted on 2018-07-03

2216 Ancestral fitness and genetic background influence diversity acquired during adaptation to low drug concentration in Candida albicans

Gerstein, A. C.; Berman, J.

10.1101/360347 — evolutionary biology — Posted on 2018-07-03

2217 Microtubules provide a viscoelastic resistance to myocyte motion.

Caporizzo, M. A.; Chen, C. Y.; Salomon, A. K.; Bedi, K.; Margulies, K. B.; Prosser, B.

10.1101/361824 — biophysics — Posted on 2018-07-03

2218 High-resolution genetic map and QTL analysis of growth-related traits of Hevea brasiliensis cultivated under suboptimal temperature and humidity conditions

10.1101/355008 — plant biology — Posted on 2018-07-03

2219 Probing the Acyl Carrier Protein-Enzyme Interactions within Terminal Alkyne Biosynthetic Machinery

Su, M.; Zhu, X.; Zhang, W.

10.1101/291195 — bioengineering — Posted on 2018-07-03

2220 A transgenic pig model expressing differential levels of ZsGreen1 reporter across an extensive array of tissues

Desaulniers, A. T.; Cederberg, R. A.; Carreiro, E. P.; Gurumurthy, C. B.; White, B. R.

10.1101/293258 — genomics — Posted on 2018-07-03

2221 Continuity between koniocellular layers of dorsal lateral geniculate and inferior pulvinar nuclei in common marmosets

Huo, B.-X.; Zeater, N.; Lin, M. K.; Takahashi, Y. S.; Hanada, M.; Nagashima, J.; Lee, B. C.; Hata, J.; Grunert, U.; Miller, M. I.; Rosa, M.; Okano, H.; Martin, P. R.; Mitra, P. P.

10.1101/315598 — neuroscience — Posted on 2018-07-03

2222 Embodied precision: Intranasal oxytocin modulates multisensory integration

Crucianelli, L.; Paloyelis, Y.; Ricciardi, L.; Jenkinson, P.; Fotopoulou, A.

10.1101/361261 — neuroscience — Posted on 2018-07-03

2223 Ground-truthing environmental DNA (eDNA) metabarcoding for ecological hypothesis testing at the pondscape

Harper, L. R.; Lawson Handley, L.; Hahn, C.; Boonham, N.; Rees, H. C.; Lewis, E.; Adams, I. P.; Brotherton, P.; Phillips, S.; Hänfling, B.

10.1101/278309 — ecology — Posted on 2018-07-03

2224 Functional wiring of the human medial temporal lobe

Solomon, E. A.; Stein, J. M.; Das, S.; Gorniak, R.; Sperling, M. R.; Worrell, G.; Inman, C.; Lega, B.; Jobst, B. C.; Rizzuto, D. S.; Kahana, M. J.

10.1101/257899 — neuroscience — Posted on 2018-07-03

2225 Genome-wide interaction study of a proxy for stress-sensitivity and its prediction of major depressive disorder

Arnau-Soler, A.; Adams, M.; Generation Scotland, ; Hayward, C.; Thomson, P.

10.1101/194290 — genetics — Posted on 2018-07-03

2226 N-Cadherin Provides a Cis and Trans Ligand for Astrotactin that Functions in Glial-Guided Neuronal Migration

Horn, Z.; Behesti, H.; Hatten, M. E.

10.1101/357541 — developmental biology — Posted on 2018-07-03

2227 Drosophila small ovary encodes a zinc-finger repressor required for ovarian differentiation

Benner, L.; Castro, E. A.; Whitworth, C.; Venken, K. J.; Yang, H.; Oliver, B.; Cook, K. R.; Lerit, D. A.

10.1101/354746 — developmental biology — Posted on 2018-07-03

2228 Bidirectional control of goal-oriented action selection by distinct prefrontal cortex circuits

Huda, R.; Sipe, G. O.; Adam, E.; Breton-Provencher, V.; Pho, G.; Gunter, L.; Wickersham, I. R.; Sur, M.

10.1101/307009 — neuroscience — Posted on 2018-07-03

2229 CCL3 promotes germinal center B cells sampling by follicular regulatory T cells.

Benet, Z.; Marthi, M.; Wu, R.; Turner, J. S.; Gabayre, J. B.; Ivanitskiy, M. I.; Sethi, S. S.; Grigorova, I. L.

10.1101/295980 — immunology — Posted on 2018-07-03

2230 A method for RNA structure prediction shows evidence for structure in lncRNAs

Delli Ponti, R.; Armaos, A.; Marti, S.; Tartaglia, G. G.

10.1101/284869 — bioinformatics — Posted on 2018-07-03

2231 Integrated computational and Drosophila cancer model platform captures previously unappreciated chemicals perturbing a kinase network

Ung, P. M.-U.; Sonoshita, M.; Scopton, A. P.; Dar, A. C.; Cagan, R. L.; Schlessinger, A.

10.1101/344192 — systems biology — Posted on 2018-07-03

2232 Triggering mechanisms for motor actions: A mini meta-analysis and experimental data.

Leow, L.-A.; Uchida, A.; Egberts, J.-L.; Riek, S.; Lipp, O.; Tresilian, J.; Marinovic, W.

10.1101/360297 — neuroscience — Posted on 2018-07-03

2233 A quantitative framework for investigating the reliability of network construction

Cirtwill, A.; Eklöf, A.; Roslin, T.; Wootton, K.; Gravel, D.

10.1101/332536 — ecology — Posted on 2018-07-03

2234 The mirtron miR-1010 functions in concert with its host gene SKIP to maintain synaptic homeostasis

Amourda, C.; Saunders, T. E.

10.1101/353888 — developmental biology — Posted on 2018-07-03

2235 Mechanics of exploration in Drosophila melanogaster

Loveless, J.; Lagogiannis, K.; Webb, B.

10.1101/354795 — animal behavior and cognition — Posted on 2018-07-03

2236 Context Dependence of Biological Circuits

Catanach, T.; McCardell, R. D.; Baetica, A.-A.; Murray, R.

10.1101/360040 — synthetic biology — Posted on 2018-07-03

2237 Hazard detection with monocular bioptic telescopes in a driving simulator

Tang, X.; Bronstad, M.; Spano, L.; Doherty, A.; Moharrer, M.; Peli, E.; Luo, G.; Bowers, A.

10.1101/355925 — neuroscience — Posted on 2018-07-03

2238 microRNA-dependent regulation of biomechanical genes establishes tissue stiffness homeostasis

Moro, A.; Driscoll, T.; Armero, W.; Boraas, L. C.; Kasper, D.; Baeyens, N.; Jouy, C.; Mallikarjun, V.; Swift, J.; Ahn, S. J.; Lee, D.; Zhang, J.; Gu, M.; Gerstein, M.; Schwartz, M.; Nicoli, S.

10.1101/359521 — cell biology — Posted on 2018-07-03

2239 The malaria-protective human glycophorin structural variant DUP4 shows somatic mosaicism and association with hemoglobin levels

Algady, W.; Louzada, S.; Carpenter, D.; Brajer, P.; Färnert, A.; Rooth, I.; Yang, F.; Shaw, M.-A.; Hollox, E.

10.1101/360453 — genetics — Posted on 2018-07-03

2240 Evolution of salivary glue genes in Drosophila species

Da Lage, J.-L.; Thomas, G. W. C.; Bonneau, M.; Courtier-Orgogozo, V.

10.1101/359190 — evolutionary biology — Posted on 2018-07-03

2241 Systematic assessment of GFP tag position on protein localization and growth fitness in yeast

Davidi, D.; Weill, U.; Krieger, G.; Avihou, Z.; Milo, R.; Schuldiner, M.

10.1101/360636 — cell biology — Posted on 2018-07-03

2242 Modelling genotypes in their physical microenvironment to predict single- and multi-cellular behaviour

Voukantsis, D.; Kahn, K.; Hadley, M.; Wilson, R.; Buffa, F. M.

10.1101/360446 — bioinformatics — Posted on 2018-07-03

2243 Phenotypic landscape of schizophrenia-associated genes defines candidates and their shared functions

Thyme, S. B.; Pieper, L. M.; Li, E. H.; Pandey, S.; Wang, Y.; Morris, N. S.; Sha, C.; Choi, J. W.; Soucy, E. R.; Zimmerman, S.; Randlett, O.; Greenwood, J.; McCarroll, S. A.; Schier, A. F.

10.1101/360677 — genetics — Posted on 2018-07-03

2244 Hierarchical Domain Structure Reveals the Divergence of Activity among TADs and Boundaries

An, L.; Yang, T.; Yang, J.; Nuebler, J.; Li, Q.; Zhang, Y.

10.1101/361147 — bioinformatics — Posted on 2018-07-03

2245 Early transcriptional responses after dengue vaccination mirror the response to natural infection and predict neutralizing antibody titers

Popper, S. J.; Strouts, F. R.; Lindow, J. C.; Cheng, H. K.; Montoya, M.; Balmaseda, A.; Durbin, A. P.; Whitehead, S. S.; Harris, E.; Kirkpatrick, B. D.; Relman, D. A.

10.1101/314377 — immunology — Posted on 2018-07-03

2246 Mango: Distributed Visualization for Genomic Analysis

Morrow, A. K.; He, G. Z.; Nothaft, F. A.; Tu, E. T.; Paschall, J.; Yosef, N.; Joseph, A. D.

10.1101/360842 — bioinformatics — Posted on 2018-07-03

2247 Axin proteolysis by Iduna is required for the regulation of stem cell proliferation and intestinal homeostasis in Drosophila

Gultekin, Y.; Steller, H.

10.1101/296830 — developmental biology — Posted on 2018-07-03

2248 Computational modeling of social face perception in humans: Leveraging the active appearance model

Guan, J.; Ryali, C.; Yu, A. J.

10.1101/360776 — animal behavior and cognition — Posted on 2018-07-03

2249 Predicting audiovisual speech: Early combined effects of sentential and visual constraints

Solberg Okland, H.; Todorovic, A.; Luettke, C. S.; McQueen, J. M.; de Lange, F. P.

10.1101/360578 — neuroscience — Posted on 2018-07-03

2250 Mental and Physical Well-being of People Working in Helping Professions, Employed in Youth Educational Centres and Sociotherapy Centres

Szrajda, J.; Sygit-Kowalkowska, E.; Weber-Rajek, M.; Zio?kowski, M.; Borkowska, A.

10.1101/361311 — scientific communication and education — Posted on 2018-07-03

2251 Anti-CD137 monoclonal antibody enhances trastuzumab-induced, natural killer cell-mediated cytotoxicity against pancreatic cancer cell lines with low human epidermal growth factor-like receptor 2 expression

Masu, T.; Atsukawa, M.; Nakatsuka, K.; Shimizu, M.; Miura, D.; Arai, T.; Harimoto, H.; Kondo, C.; Kaneko, K.; Futagami, S.; Kawamoto, C.; Takahashi, H.; Iwakiri, K.

10.1101/361279 — immunology — Posted on 2018-07-03

2252 Prevalence and determinants of smoking status among university students: Artvin Coruh University sample

Karado?an, D.; Önal, O.; Kanbay, Y.

10.1101/361345 — epidemiology — Posted on 2018-07-03

2253 Prestimulus neural alpha power predicts confidence in discriminating identical auditory stimuli

Woestmann, M.; Waschke, L.; Obleser, J.

10.1101/285577 — neuroscience — Posted on 2018-07-03

2254 Monte Carlo Sampling of Protein Folding by Combining an All-Atom Physics-Based Model with a Native State Bias

Wang, Y.; Tian, P.; Boomsma, W.; Lindorff-Larsen, K.

10.1101/361527 — biophysics — Posted on 2018-07-03

2255 Otx2 signals from the choroid plexus to regulate adult neurogenesis

Planques, A.; Oliveira Moreira, V.; Dubreuil, C.; Prochiantz, A.; Di Nardo, A. A.

10.1101/243659 — neuroscience — Posted on 2018-07-03

2256 Cross-task perceptual learning of object recognition in simulated retinal implant perception

Wang, L.; Sharifian, F.; Napp, J.; Nath, C.; Pollmann, S.

10.1101/360669 — neuroscience — Posted on 2018-07-03

2257 Development of the P300 from childhood to adulthood: a multimodal EEG and MRI study

Overbye, K.; Huster, R. J.; Walhovd, K. B.; Fjell, A. M.; Tamnes, C. K.

10.1101/304832 — neuroscience — Posted on 2018-07-03

2258 LTRs activated by Epstein-Barr virus-induced transformation of B cells alter the transcriptome

Leung, A.; Trac, C.; Kato, H.; Costello, K. R.; Natarajan, R.; Schones, D. E.

10.1101/233163 — genomics — Posted on 2018-07-03

2259 The bovine alveolar macrophage DNA methylome is resilient to infection with Mycobacterium bovis

O'Doherty, A. M.; Rue-Albrecht, K.; Magee, D. A.; Ahting, S.; Irwin, R. E.; Hall, T. J.; Browne, J. A.; Nalpas, N. C.; Walsh, C.; Gordon, S.; Wojewodzic, M. W.; MacHugh, D. E.

10.1101/238816 — genomics — Posted on 2018-07-03

2260 Content-Aware Image Restoration: Pushing the Limits of Fluorescence Microscopy

Weigert, M.; Schmidt, U.; Boothe, T.; Müller, A.; Dibrov, A.; Jain, A.; Wilhelm, B.; Schmidt, D.; Broaddus, C.; Culley, S.; Rocha-Martins, M.; Segovia-Miranda, F.; Norden, C.; Henriques, R.; Zerial, M.; Solimena, M.; Rink, J.; Tomancak, P.; Royer, L.; Jug, F.; Myers, E. W.

10.1101/236463 — bioinformatics — Posted on 2018-07-03

2261 The return to water in ancestral Xenopus was accompanied by a novel mechanisms for producing and shaping vocal signals

Kwong-Brown, U.; Tobias, M. L.; Elias, D. O.; Hall, I. C.; Elemans, C. P. H.; Kelley, D. B.

10.1101/360255 — zoology — Posted on 2018-07-03

2262 Rapid high-resolution measurement of DNA replication timing by droplet digital PCR

Batrakou, D. G.; Heron, E. D.; Nieduszynski, C. A.

10.1101/208546 — molecular biology — Posted on 2018-07-03

2263 Nuclear and mitochondrial genomic resources for the meltwater stonefly, Lednia tumana (Plecoptera: Nemouridae)

Hotaling, S.; Kelley, J. L.; Weisrock, D. W.

10.1101/360180 — genomics — Posted on 2018-07-03

2264 FENNEC - Functional Exploration of Natural Networks and Ecological Communities

Ankenbrand, M. J.; Hohlfeld, S. C. Y.; Weber, L.; Foerster, F.; Keller, A.

10.1101/194308 — ecology — Posted on 2018-07-03

2265 ZetaHunter: a reproducible taxonomic classification tool for tracking the ecology of the Zetaproteobacteria and other poorly-resolved taxa

McAllister, S. M.; Moore, R. M.; Chan, C. S.

10.1101/359620 — bioinformatics — Posted on 2018-07-03

2266 Acquiring absolute pitch in adulthood is difficult but possible

Wong, Y. K.; Lui, K. F. H.; Yip, K. H. M.; Wong, A. C.- N.

10.1101/355933 — animal behavior and cognition — Posted on 2018-07-03

2267 Physiological Dynamic Compression Regulates Central Energy Metabolism in Primary Human Chondrocytes

Salinas, D.; Mumey, B.; June, R. K.

10.1101/359885 — systems biology — Posted on 2018-07-03

2268 Imaging Striatal Dopamine Release Using a Non-Genetically Encoded Near-Infrared Fluorescent Catecholamine Nanosensor

Beyene, A. G.; Delevich, K.; Del Bonis ODonnell, J. T.; Piekarski, D. J.; Lin, W. C.; Thomas, A. W.; Yang, S. J.; Kosillo, P.; Yang, D.; Wilbrecht, L.; Landry, M. P.

10.1101/356543 — neuroscience — Posted on 2018-07-03

2269 The age-dependent relationship between resting heart rate variability and functional brain connectivity

Kumral, D.; Schaare, H. L.; Beyer, F.; Reinelt, J.; Uhlig, M.; Liem, F.; Lampe, L.; Babayan, A.; Reiter, A.; Erbey, M.; Roebbig, J.; Loeffler, M.; Schroeter, M. L.; Husser, D.; Witte, A. V.; Villringer, A.; Gaebler, M.

10.1101/360909 — neuroscience — Posted on 2018-07-03

2270 Visual features contribute differently to preferences for different item categories

Oren, S.; Sela, T.; Levy, D. J.; Schonberg, T.

10.1101/360172 — neuroscience — Posted on 2018-07-03

2271 The processing of color preference in the brain

Racey, C.; Franklin, A.; Bird, C. M.

10.1101/361006 — neuroscience — Posted on 2018-07-03

2272 Gut Microbial succession during conventionalization of germfree chicken

Thomas, M.; Wongkuna, S.; Ghimire, S.; Doerner, K.; Singery, A.; Nelson, E.; Woyengo, T.; Chankhamhaengdecha, S.; Janvilisri, T.; Scaria, J.

10.1101/360784 — microbiology — Posted on 2018-07-03

2273 BacStalk: a comprehensive and interactive image analysis software tool for bacterial cell biology

Hartmann, R.; van Teeseling, M. C. F.; Thanbichler, M.; Drescher, K.

10.1101/360230 — microbiology — Posted on 2018-07-03

2274 Whole genome sequencing of antimicrobial-resistant Shigella sonnei associated with infection acquired from international and domestic setting reveals gene allelic variants that predict Global Lineages

Abelman, R. L.; M'ikanatha, N. M.; Dudley, E. G.

10.1101/361196 — microbiology — Posted on 2018-07-03

2275 A phenotypic small-molecule screen identifies halogenated salicylanilides as inhibitors of fungal morphogenesis, biofilm formation and host cell invasion

Garcia, C.; Burgain, A.; Chaillot, J.; Pic, E.; Khemiri, I.; Sellam, A.

10.1101/361139 — microbiology — Posted on 2018-07-03

2276 Sequencing and characterization of the complete mitochondrial genome of Critically Endangered Black Soft-shell Turtle (Nilssonia nigricans)

Kundu, S.; Kumar, V.; Tyagi, K.; Chakraborty, R.; Singha, D.; Rahaman, I.; Pakrashi, A.; Chandra, K.

10.1101/361501 — genomics — Posted on 2018-07-03

2277 Comparison of genotoxic vs. non-genotoxic stabilization of p53 provides insight into parallel stress-responsive transcriptional networks

Catizone, A. N.; Berger, S. L.; Sammons, M. A.

10.1101/360974 — genomics — Posted on 2018-07-03

2278 The first complete mitochondrial genome of marigold pest thrips, Neohydatothrips samayunkur (Sericothripinae) and comparative analysis

Kumar, V.; Tyagi, K.; Kundu, S.; Chakraborty, R.; Singha, D.; Chandra, K.

10.1101/361402 — genomics — Posted on 2018-07-03

2279 Resolving the hypotheticome: annotating M. tuberculosis gene function through bibliomic reconciliation and structural modeling

Modlin, S. J.; Gunasekaran, D.; Zlotnicki, A. M.; Elghraoui, A.; Kuo, N.; Chan, C. K.; Valafar, F.

10.1101/358986 — genomics — Posted on 2018-07-03

2280 Different obesity phenotypes correlated with the PI3K-AKT signaling pathway in tree shrews

HAN, H.; ZHANG, H.; CHEN, Y.; DAI, J.

10.1101/361063 — genetics — Posted on 2018-07-03

2281 Using social media to quantify spatial and temporal dynamics of nature-based recreational activities

Mancini, F.; Coghill, G. M.; Lusseau, D.

10.1101/093112 — ecology — Posted on 2018-07-03

2282 How to build a mycelium: tradeoffs in fungal architectural traits

Lehmann, A.; Zheng, W.; Soutschek, K.; Rillig, M. C.

10.1101/361253 — ecology — Posted on 2018-07-03

2283 Temperature-mediated inhibition of a bumble bee parasite by an intestinal symbiont

Palmer-Young, E. C.; Raffel, T. R.; McFrederick, Q. S.

10.1101/360263 — ecology — Posted on 2018-07-03

2284 Hierarchical Domain Structure Reveals the Divergence of Activity among TADs and Boundaries

An, L.; Yang, T.; Yang, J.; Nuebler, J.; Li, Q.; Zhang, Y.

10.1101/361147 — bioinformatics — Posted on 2018-07-03

2285 Stationary Equations for Non-Markovian Biochemical Systems

Zhang, J.; Zhou, T.

10.1101/360123 — systems biology — Posted on 2018-07-03

2286 Temporal expectations modulate face image repetition suppression as indexed by event-related potentials

Feuerriegel, D.; Churches, O.; Coussens, S.; Keage, H. A. D.

10.1101/361170 — neuroscience — Posted on 2018-07-03

2287 Timing between cortical slow oscillations and heart rate bursts during sleep predicts perceptual speed, but not offline consolidation

Naji, M.; Krishnan, G. P.; McDevitt, E. A.; Bazhenov, M.; Mednick, S. C.

10.1101/360867 — neuroscience — Posted on 2018-07-03

2288 High cell diversity and complex peptidergic signalling underlie placozoan behaviour

Varoqueaux, F.; Williams, E. A.; Grandemange, S.; Truscello, L.; Kamm, K.; Schierwater, B.; Jekely, G.; Fasshauer, D.

10.1101/360925 — neuroscience — Posted on 2018-07-03

2289 Shared vulnerability for connectome alterations across psychiatric and neurological brain disorders

de Lange, S. C.; Scholtens, L. H.; van den Berg, L. H.; Boks, M. P.; Bozzali, M.; Cahn, W.; Dannlowski, U.; Durston, S.; Geuze, E.; van Haren, N. E. M.; Hillegers, M. H. J.; Koch, K.; Jurado, M. A.; Mancini, M.; Marques-Iturria, I.; Meinert, S.; Ophoff, R. A.; Reess, T. J.; Repple, J.; Kahn, R. S.; van den Heuvel, M. P.; the Alzheimer's Disease Neuroimaging Initiative (ADNI),

10.1101/360586 — neuroscience — Posted on 2018-07-03

2290 Self beyond the body: task-relevant distal cues modulate performance and body ownership

Grechuta, K.; Ulysse, L.; Rubio Ballester, B.; Verschure, P.

10.1101/361022 — neuroscience — Posted on 2018-07-03

2291 Impact of Different Acoustic Components on EEG-based Auditory Attention Decoding in Noisy and Reverberant Conditions

Aroudi, A.; Mirkovic, B.; De Vos, M.; Doclo, S.

10.1101/360834 — neuroscience — Posted on 2018-07-03

2292 Preparing for the worst: Evidence that older adults proactively downregulate negative affect

Corbett, B.; Rajah, M. N.; Duarte, A.

10.1101/359901 — neuroscience — Posted on 2018-07-03

2293 Episodic Control as Meta-Reinforcement Learning

Ritter, S.; Wang, J. X.; Kurth-Nelson, Z.; Botvinick, M. M.

10.1101/360537 — neuroscience — Posted on 2018-07-03

2294 Interspecific variation of olfactory preferences in flies, mice, and humans

Manoel, D.; Makhlouf, M.; Scialdone, A.; Saraiva, L. R.

10.1101/358713 — neuroscience — Posted on 2018-07-03

2295 Giardia’s ventral disc is hyperstable and composed of over 80 disc-associated proteins

Nosala, C.; Hagen, K. D.; Jones, K.; Loudermilk, R.; Nguyen, K.; Dawson, S. C.

10.1101/361105 — microbiology — Posted on 2018-07-03

2296 Duplications and functional specialization force distinct evolution of isoflavonoid biosynthetic genes in legumes

Jiao, Y.; Zhao, Y.; Chen, W.

10.1101/361386 — genomics — Posted on 2018-07-03

2297 Genetic, inflammatory, and tissue-specific factors control expression of human calpain-14

Miller, D. E.; Forney, C.; Rochman, M.; Cranert, S.; Habel, J.; Rymer, J.; Lynch, A.; Schroeder, C.; Lee, J.; Sauder, A.; Smith, Q.; Chawla, M.; Trimarchi, M. P.; Lu, X.; Fjellman, E.; Brusilovsky, M.; Waggoner, S.; Weirauch, M.; Rothenberg, M.; Kottyan, L.

10.1101/359638 — genomics — Posted on 2018-07-03

2298 Profiling the genome-wide landscape of tandem repeat expansions

Mousavi, N.; Shleizer-Burko, S.; Gymrek, M.

10.1101/361162 — genomics — Posted on 2018-07-03

2299 Oxytocin promotes lying for personal gain in a genotype-dependent manner

Sindermann, C.; Luo, R.; Becker, B.; Kendrick, K. M.; Montag, C.

10.1101/361212 — genetics — Posted on 2018-07-03

2300 The ATPase activity of E. coli RecA prevents accumulation of toxic complexes formed by erroneous binding to undamaged double strand DNA

Gataulin, D. V.; Carey, J. N.; Li, J.; Shah, P.; Grubb, J.; Bishop, D. K.

10.1101/361097 — genetics — Posted on 2018-07-03

2301 Phenotypic landscape of schizophrenia-associated genes defines candidates and their shared functions

Thyme, S. B.; Pieper, L. M.; Li, E. H.; Pandey, S.; Want, Y.; Morris, N. S.; Sha, C.; Choi, J. W.; Soucy, E. R.; Zimmerman, S.; Randlett, O.; Greenwood, J.; McCarroll, S. A.; Schier, A. F.

10.1101/360677 — genetics — Posted on 2018-07-03

2302 Environmentally-induced epigenetic conversion of a piRNA cluster

Casier, K.; Delmarre, V.; Gueguen, N.; Hermant, C.; Viode, E.; Vaury, C.; Ronsseray, S.; Brasset, E.; Teysset, L.; Boivin, A.

10.1101/360743 — genetics — Posted on 2018-07-03

2303 Pyramids and cascades: a synthesis of food chain functioning and stability

Barbier, M.; Loreau, M.

10.1101/361246 — ecology — Posted on 2018-07-03

2304 Gut bacterial diversity and physiological traits of Anastrepha fraterculus Brazilian-1 morphotype males are affected by antibiotic treatment

Juarez, M. L.; Pimper, L. E.; Bachmann, G. E.; Conte, C. A.; Ruiz, M. J.; Goane, L.; Medina Pereyra, P.; Castro, F.; Salgueiro, J.; Cladera, J. L.; Fernandez, P. C.; Bourtzis, K.; Lanzavecchia, S. B.; Vera, M. T.; Segura, D. F.

10.1101/360693 — ecology — Posted on 2018-07-03

2305 Evaluation of habitat protection under the European Natura 2000 conservation network - the example for Germany

Friedrichs, M.; Hermoso, V.; Bremerich, V.; Langhans, S. D.

10.1101/359125 — ecology — Posted on 2018-07-03

2306 Risk of disease spillover from dogs to wild carnivores in Kanha Tiger Reserve, India.

chaudhary, v.; Rajput, N.; Shrivastav, A. B.; Tonkyn, D.

10.1101/360271 — ecology — Posted on 2018-07-03

2307 Evaluating Named-Entity Recognition approaches in plant molecular biology

Do, H.; Than, K.; Larmande, P.

10.1101/360966 — bioinformatics — Posted on 2018-07-03

2308 Mango: Distributed Visualization for Genomic Analysis

Morrow, A. K.; He, G. Z.; Nothaft, F. A.; Paschall, J.; Yosef, N.; Joseph, A. D.

10.1101/360842 — bioinformatics — Posted on 2018-07-03

2309 Mutation Vulnerability Characterizes Human Cancer Genes

Li, Y. F.; Xin, F.

10.1101/360065 — bioinformatics — Posted on 2018-07-03

2310 IDEA: a web server for Interactive Differential Expression Analysis with R Packages

Zhao, Q.; Xie, Y.; Nie, P.; Diao, R.; Sun, L.; Zuo, Z.; Ren, J.

10.1101/360461 — bioinformatics — Posted on 2018-07-03

2311 phylostratr: A framework for phylostratigraphy

Arendsee, Z.; Li, J.; Singh, U.; Seetharam, A.; Dorman, K.; Wurtele, E. S.

10.1101/360164 — bioinformatics — Posted on 2018-07-03

2312 Feedback-mediated signal conversion promotes viral fitness

Vardi, N.; Chaturvedi, S.; Weinberger, L. S.

10.1101/361071 — systems biology — Posted on 2018-07-03

2313 Genetic variation in a complex polyploid: unveiling the dynamic allelic features of sugarcane

Sforca, D. A.; Vautrin, S.; Cardoso-Silva, C. B.; Mancini, M. C.; Cruz, M. V. R.; Pereira, G. d. S.; Conte, M.; Bellec, A.; Dahmer, N.; Fourment, J.; Rodde, N.; Van Sluys, M.-A.; Vicentini, R.; Garcia, A. A. F.; Forni-Martins, E. R.; Sampaio, M.; Hoffmann, H.; Pinto, L. R.; Landell, M. G. d. A.; Vincentz, M.; BERGES, H.; Souza, A. P.

10.1101/361089 — plant biology — Posted on 2018-07-03

2314 Representation of action concepts in left posterior temporal cortex that generalize across vision and language

Wurm, M.; Caramazza, A.

10.1101/361220 — neuroscience — Posted on 2018-07-03

2315 High proportion of multiple copies of Plasmodium falciparum Plasmepsin-2 gene in African isolates: Is piperaquine resistance emerging in Africa?

Leroy, D.; Macintyre, F.; Adamy, M.; Laurijssens, B.; Klopper, R.; Khim, N.; Legrand, E.; Wells, T.; Menard, D.

10.1101/361204 — microbiology — Posted on 2018-07-03

2316 RibonucleaseH1-targeted R-loops in surface antigen gene expression sites can direct trypanosome immune evasion

Briggs, E.; Crouch, K.; Lemgruber, L.; Lapsley, C.; McCulloch, R.

10.1101/361451 — microbiology — Posted on 2018-07-03

2317 Pre-existing SIV Infection Increases Susceptibility to Tuberculosis in Mauritian Cynomolgus Macaques

Rodgers, M.; Ameel, C.; Ellis-Connell, A.; Balgeman, A.; Maiello, P.; Barry, G.; Friedrich, T.; Klein, E.; O'Connor, S.; Scanga, C.

10.1101/361485 — immunology — Posted on 2018-07-03

2318 Genetically modified pigs are protected from classical swine fever virus

Xie, Z.; Pang, D.; Yuan, H.; Jiao, H.; Lu, C.; Wang, K.; Yang, Q.; Li, M.; Chen, X.; Yu, T.; Chen, X.; Dai, Z.; Peng, Y.; Tang, X.; Li, Z.; Wang, T.; Guo, H.; Li, L.; Tu, C.; Lai, L.; Ouyang, H.

10.1101/361477 — genomics — Posted on 2018-07-03

2319 Powerful gene set analysis in GWAS with the Generalized Berk-Jones statistic

Sun, R.; Hui, S.; Bader, G.; Lin, X.; Kraft, P.

10.1101/361436 — genetics — Posted on 2018-07-03

2320 Neural oligarchy: how synaptic plasticity breeds neurons with extreme influence

Kleberg, F. I.; Triesch, J.

10.1101/361394 — neuroscience — Posted on 2018-07-03

2321 The effect of silencing immunity related genes on longevity in the naturally occurring Anopheles arabiensis mosquito population of Southwest Ethiopia

Habtewold, T.; Debalke, S.; Duchateau, L.; Christophides, G.

10.1101/361444 — immunology — Posted on 2018-07-03

2322 Role of cis, trans, and inbreeding effects on meiotic recombination in Saccharomyces cerevisiae

RAFFOUX, X.; BOURGE, M.; DUMAS, F.; MARTIN, O.; Falque, M.

10.1101/361428 — genetics — Posted on 2018-07-03

2323 Unsupervised phenotypic analysis of cellular images with multi-scale convolutional neural networks

Godinez, W. J.; Hossain, I.; Zhang, X.

10.1101/361410 — bioinformatics — Posted on 2018-07-03

2324 Epithelial restitution defect in neonatal jejunum is rescued by juvenile mucosal homogenate in a pig model of intestinal ischemic injury and repair

Ziegler, A. L.; Pridgen, T. A.; Mills, J. K.; Gonzalez, L. M.; Van Landeghem, L.; Odle, J.; Blikslager, A. T.

10.1101/361352 — physiology — Posted on 2018-07-03

2325 Genome-wide analysis of the role of the antibiotic biosynthesis regulator AbsA2 in Streptomyces coelicolor A3(2)

Lewis, R. A.; Wahab, A.; Bucca, G.; Laing, E. E.; Moller-Levet, C. S.; Kierzek, A.; Smith, C. P.

10.1101/361360 — genomics — Posted on 2018-07-03

2326 Analysis of genetic control and QTL mapping of essential wheat grain quality traits in a recombinant inbred population

Goel, S.; Singh, K.; Singh, B.; Grewal, S.; Dwivedi, N.; Alqarawi, A.; Abd_Allah, E.; Singh, N. K.; Ahmad, P.

10.1101/361329 — genetics — Posted on 2018-07-03

2327 Phase transitions in evolutionary dynamics

Alcalde Cuesta, F.; Gonzalez Sequeiros, P.; Lozano Rojo, A.

10.1101/361337 — evolutionary biology — Posted on 2018-07-03

2328 The Association between Cigarette Affordability and Consumption

HE, Y.; Shang, C.; Chaloupka, F.

10.1101/361287 — epidemiology — Posted on 2018-07-03

2329 Modelling genotypes in their physical microenvironment to predict single- and multi-cellular behaviour

Buffa, F.; Voukantsis, D.; Kahn, K.; Hadley, M.; Wilson, R.

10.1101/360446 — bioinformatics — Posted on 2018-07-03

2330 The Big Five, Self-efficacy, and Self-control in Boxers

Chen, X.; Li, B.; Xie, J.; Li, Y.; Zhang, G.

10.1101/361295 — scientific communication and education — Posted on 2018-07-03

2331 Differential expression of PKCα and -β in the zebrafish retina

Neuhauss, S. C. F.; Haug, M. F.; Gesemann, M.; Berger, M.

10.1101/361303 — neuroscience — Posted on 2018-07-03

2332 Astrocytes amplify neuronal dendritic volume transmission

Chen, C.; Jiang, Z.; Fu, X.; Tasker, J. G.

10.1101/361014 — neuroscience — Posted on 2018-07-03

2333 Cancer cell exosomes can initiate malignant cell transformation

Stefanius, K.; Severage, K.; de Souza Santos, M.; Toombs, J.; Gray, H.; Chimalapati, S.; Kim, M. S.; Brekken, R.; Orth, K.

10.1101/360982 — cancer biology — Posted on 2018-07-03

2334 Activation of lateral hypothalamic group III mGluRs suppresses drug-seeking following abstinence and cocaine-associated increases in excitatory drive to orexin/hypocretin cells

Yeoh, J. W.; James, M. H.; Adams, C. D.; Bains, J. S.; Sakurai, T.; Aston-Jones, G.; Graham, B. A.; Dayas, C. V.

10.1101/360081 — neuroscience — Posted on 2018-07-03

2335 Allatostatin C/AstC-R2 is a Novel Pathway to Modulate Circadian Activity Pattern in Drosophila

Diaz, M. M.; Schlichting, M.; Abruzzi, K.; Rosbash, M.

10.1101/361048 — neuroscience — Posted on 2018-07-03

2336 Structural rearrangement of TFIIS- and TFIIF/TFIIE-like subunits in RNA polymerase I transcription complexes

Tafur, L.; Sadian, Y.; Wetzel, R.; Weis, F.; Muller, C. W.

10.1101/353136 — molecular biology — Posted on 2018-07-03

2337 The Mediator CDK8-Cyclin C complex modulates vein patterning in Drosophila by stimulating Mad-dependent transcription

Li, X.; Liu, M.; Ren, X.; Loncle, N.; Wang, Q.; Hemba-Waduge, R.-U.-S.; Boube, M.; Bourbon, H.-M. G.; Ni, J.-Q.; Ji, J.-Y.

10.1101/360628 — developmental biology — Posted on 2018-07-03

2338 A new computational method for membrane compressibility: Bilayer mechanical thickness revisited

Doktorova, M.; LeVine, M. V.; Khelashvili, G.; Weinstein, H.

10.1101/360792 — biophysics — Posted on 2018-07-03

2339 Up, down, and out: optimized libraries for CRISPRa, CRISPRi, and CRISPR-knockout genetic screens

Sanson, K. R.; Hanna, R. E.; Hegde, M.; Donovan, K. F.; Strand, C.; Sullender, M. E.; Vaimberg, E. W.; Goodale, A.; Root, D. E.; Piccioni, F.; Doench, J. G.

10.1101/356626 — genomics — Posted on 2018-07-02

2340 Functional genomics and programmed genome editing of omega-1 of the blood fluke Schistosoma mansoni

Ittiprasert, W.; Mann, V. H.; Karinshak, S. E.; Chaidee, A.; Tanno, T.; Kumkhaek, C.; Prangtaworn, P.; Mentink-Kane, M.; Sankaranarayan, G.; Coghlan, A.; Cochran, C. J.; Rinaldi, G.; Driguez, P.; Holroyd, N.; Tracey, A.; Hokke, C. H.; Everts, B.; Hoffmann, K. F.; Berriman, M.; Brindley, P. J.

10.1101/358424 — molecular biology — Posted on 2018-07-02

2341 Arthropod Abundance Associated with the Natural Resources Conservation Service: Implications for Greater Sage-Grouse Management.

Goosey, H.

10.1101/356451 — ecology — Posted on 2018-07-02

2342 LEAFY maintains apical stem cell activity during shoot development in the fern Ceratopteris richardii

Langdale, J.; de Stilio, V. S.; Plackett, A. R. G.; Conway, S. J.; Hewitt Hazelton, K. D.; Rabbinowitsch, E. H.

10.1101/360107 — plant biology — Posted on 2018-07-02

2343 Plant aquaporins: the origin of NIPs

Borstlap, A. C.

10.1101/351064 — plant biology — Posted on 2018-07-02

2344 Multifunctional CRISPR/Cas9 with engineered immunosilenced human T cell epitopes

Ferdosi, S. R.; Ewaisha, R.; Moghadam, F.; Krishna, S.; Park, J. G.; Ebrahimkhani, M. R.; Kiani, S.; Anderson, K. S.

10.1101/360198 — immunology — Posted on 2018-07-02

2345 Comparative genomic analysis revealed rapid differentiation in the pathogenicity-related gene repertoires between Pyricularia oryzae and Pyricularia penniseti isolated from a Pennisetum grass

Zheng, H.; Zhong, Z.; Shi, M.; Zhang, L.; Lin, L.; Hong, Y.; Fang, T.; Zhu, Y.; Guo, J.; Zhang, L.; Fang, J.; lin, H.; Norvienyeku, J.; Chen, X.; Lu, G.; Hu, H.; Wang, Z.

10.1101/360016 — genomics — Posted on 2018-07-02

2346 Reassortment, positive selection, and the inter-segmental patterns of divergence and polymorphism in influenza virus H3N2

Kim, K.; Park, Y.; Kim, Y.

10.1101/360941 — evolutionary biology — Posted on 2018-07-02

2347 Unilateral optogenetic inhibition and excitation of basal ganglia output show opposing effects on left/right lick choices and movement initiation in mice

Morrissette, A.; Chen, P.-H.; Bhamani, C.; Borden, P. Y.; Waiblinger, C.; Stanley, G. B.; Jaeger, D.

10.1101/360818 — neuroscience — Posted on 2018-07-02

2348 Long-read sequencing across the C9orf72 ‘GGGGCC’ repeat expansion: implications for clinical use and genetic discovery efforts in human disease

Ebbert, M. T. W.; Farrugia, S.; Sens, J.; Jansen-West, K.; Gendron, T.; Prudencio, M.; McLaughlin, I. J.; Bowman, B.; Seetin, M.; DeJesus-Hernandez, M.; Jackson, J.; Brown, P.; Dickson, D.; van Blitterswijk, M.; Rademakers, R.; Petrucelli, L.; Fryer, J. D.

10.1101/176651 — genetics — Posted on 2018-07-02

2349 Analyzing Vaccine Trials in Epidemics with Mild and Asymptomatic Infection

Kahn, R.; Hitchings, M.; Wang, R.; Bellan, S.; Lipsitch, M.

10.1101/295337 — epidemiology — Posted on 2018-07-02

2350 Neural precursors of decisions that matter--an ERP study of deliberate and arbitrary choice

Maoz, U.; Yaffe, G.; Koch, C.; Mudrik, L.

10.1101/097626 — neuroscience — Posted on 2018-07-02

2351 Generation of pulmonary neuro-endocrine cells and tumors resembling small cell lung cancers from human embryonic stem cells

Chen, J.; Poran, A.; Unni, A.; Huang, S.; Elemento, O.; Snoeck, H.-W.; Varmus, H.

10.1101/261461 — cancer biology — Posted on 2018-07-02

2352 Whole genome scan reveals the multigenic basis of recent tidal marsh adaptation in a sparrow

Deane-Coe, P.; Butcher, B.; Greenberg, R.; Lovette, I.

10.1101/360008 — evolutionary biology — Posted on 2018-07-02

2353 Linkage Disequilibrium and Population Structure in Wild and Cultivated Populations of Rubber Tree (Hevea brasiliensis)

de Souza, L. M.; dos Santos, L. H. B.; Rosa, J. R. B. F.; da Silva, C. C.; Mantello, C. C.; Conson, A. R. O.; Scaloppi Junior, E. J.; Fialho, J. d. F.; de Moraes, M. L. T.; Goncalves, P. d. S.; Margarido, G. R. A.; Garcia, A. A. F.; Le Guen, V.; de Souza, A. P.

10.1101/360610 — plant biology — Posted on 2018-07-02

2354 Tracking disease resistance deployment in potato breeding by enrichment sequencing

Armstrong, M. R.; Vossen, J.; Lim, T. Y.; Hutten, R. C. B.; Xu, J.; Strachan, S. M.; Harrower, B.; Champouret, N.; Gilroy, E. M.; Hein, I.

10.1101/360644 — plant biology — Posted on 2018-07-02

2355 Multi-Method Characterisation of the Human Circulating Microbiome

Whittle, E.; Leonard, M. O.; Harrison, R. D.; Gant, T. W.; Tonge, D. P.

10.1101/359760 — molecular biology — Posted on 2018-07-02

2356 Low genomic divergence and high gene flow between locally adapted populations of the swamp sparrow

Deane-Coe, P.; Greenberg, R.; Lovette, I.; Harrison, R.

10.1101/359992 — evolutionary biology — Posted on 2018-07-02

2357 Teachers’ approaches to genetics teaching mirror their perceptions of teaching controversial, societal and sensitive issues

Aivelo, T.; Uitto, A.

10.1101/350710 — scientific communication and education — Posted on 2018-07-02

2358 Hydra Bcl-2 and TMBIMP family proteins display anti-apoptotic functions

Motamedi, M.; Lindenthal, L.; Wagner, A.; Kemper, M.; Moneer, J.; Steichele, M.; Klimovich, A.; Wittlieb, J.; Jenewein, M.; Böttger, A.

10.1101/359174 — developmental biology — Posted on 2018-07-02

2359 Systematic assessment of GFP tag position on protein localization and growth fitness in yeast

Davidi, D.; Weill, U.; Krieger, G.; Avihou, Z.; Milo, R.; Schuldiner, M.

10.1101/360636 — cell biology — Posted on 2018-07-02

2360 Comparative Proteogenomic Analysis of Right-sided Colon Cancer, Left-sided Colon Cancer and Rectal Cancers Reveal Distinct Mutational Profiles.

Imperial, R.; Ahmed, Z.; Toor, O. M.; Erdogan, C.; Khaliq, A.; Case, P.; Case, J.; Kennedy, K.; Cummings, L. S.; Melton, N.; Raza, S.; Diri, B.; Mohammad, R.; El-Rayes, B.; Pluard, T.; Hussain, A.; Subramanian, J.; Masood, A.

10.1101/359679 — genomics — Posted on 2018-07-02

2361 Nearly all new protein-coding predictions in the CHESS database are not protein-coding

Jungreis, I.; Tress, M. L.; Mudge, J.; Sisu, C.; Hunt, T.; Johnson, R.; Uszczynska-Ratajczak, B.; Lagarde, J.; Wright, J.; Muir, P.; Gerstein, M.; Guigo, R.; Kellis, M.; Frankish, A.; Flicek, P.; The GENCODE Consortium,

10.1101/360602 — genomics — Posted on 2018-07-02

2362 Comparative Genomic Analysis of Bacillus thuringiensis Reveals Molecular Adaptation to Copper Tolerance

Low, Y. Y.; Chin, G. J. W. L.; Joseph, C. G.; Rodrigues, K. F.

10.1101/360354 — genomics — Posted on 2018-07-02

2363 Non-hierarchical competition and priority effects shape species composition in a complex grassland community

Uricchio, L. H.; Daws, S. C.; Spear, E. R.; Mordecai, E. A.

10.1101/253518 — ecology — Posted on 2018-07-02

2364 Translational control of TFEB and autophagy via eIF5A rejuvenates B cell immunity

Zhang, H.; Alsaleh, G.; Feltham, J.; Sun, Y.; Riffelmacher, T.; Charles, P.; Frau, L.; Yu, Z.; Mohammed, S.; Balabanov, S.; Mellor, J.; Simon, A. K.

10.1101/360503 — cell biology — Posted on 2018-07-02

2365 Systems biology reveals NR2F6 and TGFB1 as key regulators of feed efficiency in beef cattle

Alexandre, P. A.; Naval-Sanchez, M.; Porto-Neto, L. R.; Ferraz, J. B. S.; Reverter, A.; Fukumasu, H.

10.1101/360396 — systems biology — Posted on 2018-07-02

2366 Genetic mapping with allele dosage information in tetraploid Urochloa decumbens (Stapf) R.D. Webster reveals insights into spittlebug (Notozulia entreriana Berg) resistance

Ferreira, R. C. U.; Lara, L. A. d. C.; Chari, L.; Barrios, S. C. L.; do Valle, C. B.; Valerio, J. R.; Torres, F. Z. V.; Garcia, A. A. F.; de Souza, A. P.

10.1101/360594 — plant biology — Posted on 2018-07-02

2367 Dynamics of multiple interacting excitatory and inhibitory populations with delays

Kim, C.; Egert, U.; Kumar, A.

10.1101/360479 — neuroscience — Posted on 2018-07-02

2368 A new counter-intuitive therapy for adult amblyopia

Lunghi, C.; Sframeli, A. T.; Lepri, A.; Lepri, M.; Lisi, D.; Sale, A.; Morrone, M. C.

10.1101/360420 — neuroscience — Posted on 2018-07-02

2369 Intracellular calcium dysregulation precedes muscle decline in C. elegans modeling Duchenne muscular dystrophy

10.1101/360388 — molecular biology — Posted on 2018-07-02

2370 Beyond members of the Flaviviridae family, sofosbuvir also inhibits chikungunya virus replication

Ferreira, A.; Reis, P.; de Freitas, C.; Queiroz, C.; Villas Boas Hoelz, L.; Bastos, M.; Mattos, M.; Correia Loiola, E.; Trindade, P.; Rangel Vieira, Y.; Barbosa-Lima, G.; de Castro Faria Neto, H.; Boechat, N.; Rehen, S.; Bruning, K.; Bozza, F.; Bozza, P.; Souza, T.

10.1101/360305 — microbiology — Posted on 2018-07-02

2371 Cell type-dependent control of p53 transcription and enhancer activity by p63

Karsli Uzunbas, G.; Ahmed, F.; Sammons, M. A.

10.1101/268649 — genomics — Posted on 2018-07-02

2372 The malaria-protective human glycophorin structural variant DUP4 shows somatic mosaicism and association with hemoglobin levels

Algady, W.; Louzada, S.; Carpenter, D.; Brajer, P.; Färnert, A.; Rooth, I.; Yang, F.; Shaw, M.-A.; Hollox, E.

10.1101/360453 — genetics — Posted on 2018-07-02

2373 PRSS56 is required for the developmental positioning of ocular angle structures

Labelle-Dumais, C.; Tolman, N. G.; Paylakhi, S.; John, S. W.; Nair, K. S.

10.1101/360321 — genetics — Posted on 2018-07-02

2374 Growth rate trades off with enzymatic investment in soil filamentous fungi

Zheng, W.; Lehmann, A.; Ryo, M.; Valyi, K.; Rillig, M. C.

10.1101/360511 — ecology — Posted on 2018-07-02

2375 VPAC1 couples with TRPV4 channel to promote calcium-dependent gastric cancer progression

Tang, B.; Wu, J.; Zhu, M. X.; Sun, X.; Liu, J.; Xie, R.; Dong, T. X.; Xiao, Y.; Carethers, J. M.; Yang, S.-M.; Dong, H.

10.1101/360404 — cancer biology — Posted on 2018-07-02

2376 Adjusting for systematic technical biases in risk assessment of gene signatures in transcriptomic cancer cohorts

Caballe Mestres, A.; Berenguer Llergo, A.; Stephan-Otto Attolini, C.

10.1101/360495 — bioinformatics — Posted on 2018-07-02

2377 PBHoover and CigarRoller: a method for confident haploid variant calling on Pacific Biosciences data and its application to heterogeneous population analysis

Ramirez-Busby, S. M.; Elghraoui, A.; Kim, Y. B.; Kim, K.; Valafar, F.

10.1101/360370 — bioinformatics — Posted on 2018-07-02

2378 Interleukin 22 mediates interleukin 23-induced pathology in newborn mice by disrupting the function of pancreatic and intestinal cells

Furtado, G. C.; Chen, L.; Strohmeier, V.; He, Z.; Deshpande, M.; Durum, S. K.; Moran, T. M.; Kraus, T.; Xiong, H.; Faith, J. J.; Lira, S. A.

10.1101/346577 — immunology — Posted on 2018-07-02

2379 The mechanical impact of col11a2 loss on joints; col11a2 mutant zebrafish show changes to joint development and function which lead to early onset osteoarthritis

Lawrence, E. A.; Kague, E.; Aggleton, J. A.; Harniman, R. L.; Roddy, K. A.; Hammond, C. L.

10.1101/302307 — developmental biology — Posted on 2018-07-02

2380 Optimal data-driven parameterization of coiled coils

Guzenko, D.; Strelkov, S. V.

10.1101/353532 — bioinformatics — Posted on 2018-07-02

2381 Integration and multiplexing of positional and contextual information by the hippocampal network

Posani, L.; Cocco, S.; Monasson, R.

10.1101/269340 — neuroscience — Posted on 2018-07-02

2382 Poor codon optimality as a signal to degrade transcripts with frameshifts

Schikora Tamarit, M. A.; Carey, L.

10.1101/345595 — genomics — Posted on 2018-07-02

2383 Multiple stable states in microbial communities explained by the stable marriage problem

Goyal, A.; Dubinkina, V.; Maslov, S.

10.1101/235374 — ecology — Posted on 2018-07-02

2384 The landscapes of T cell epitope immunogenicity in sequence space

Ogishi, M.; Yotsuyanagi, H.

10.1101/155317 — immunology — Posted on 2018-07-02

2385 Improving the accuracy of two-sample summary data Mendelian randomization: moving beyond the NOME assumption

Bowden, J.; Del Greco M, F.; Minelli, C.; Lawlor, D.; Zhao, Q.; Sheehan, N.; Thompson, J.; Davey Smith, G.

10.1101/159442 — epidemiology — Posted on 2018-07-02

2386 Improved CRISPR-based suppression gene drives mitigate resistance and impose a large reproductive load on laboratory-contained mosquito populations

Hammond, A. M.; Kyrou, K.; Gribble, M.; Karlsson, X.; Morianou, I.; Galizi, R.; Beaghton, A.; Crisanti, A.; Nolan, T.

10.1101/360339 — genetics — Posted on 2018-07-01

2387 Lack of signal for the impact of venom gene diversity on speciation rates in cone snails

Phuong, M. A.; Alfaro, M. E.; Mahardika, G. N.; Marwoto, R. M.; Prabowo, R. E.; von Rintelen, T.; Vogt, P. W.; Hendricks, J. R.; Puillandre, N.

10.1101/359976 — evolutionary biology — Posted on 2018-07-01

2388 Mating in wild yeast: variable interest in sex after spore germination

McClure, A. W.; Jacobs, K. C.; Zyla, T. R.; Lew, D. J.

10.1101/360289 — cell biology — Posted on 2018-07-01

2389 Atypical septate junctions maintain the somatic enclosure around maturing spermatids and prevent premature sperm release in Drosophila testis.

Dubey, P.; Kapoor, T.; Gupta, S.; Shirolikar, S.; Ray, K.

10.1101/360115 — cell biology — Posted on 2018-07-01

2390 A total synthetic approach to CRISPR/Cas9 genome editing and homology directed repair

DiNapoli, S. E.; Martinez-McFaline, R.; Gribbin, C. K.; Balgobin, C. A.; Nelson, I.; Leonard, A.; Mailhiot, D.; Kao, C.; McDonnell, S.; de Jong, J. L. O.; Houvras, Y.

10.1101/359984 — molecular biology — Posted on 2018-07-01

2391 Nanoscale Polarization of the Vaccinia Virus Entry Fusion Complex Drives Efficient Fusion

Gray, R.; Albrecht, D.; Beerli, C.; Cohen, G.; Henriques, R.; Mercer, J.

10.1101/360073 — microbiology — Posted on 2018-07-01

2392 Quantitative Real-Time Imaging of Glutathione with Sub-Cellular Resolution

Jiang, X.; Zhang, C.; Chen, J.; Choi, S.; Zhou, Y.; Zhao, M.; Song, X.; Chen, X.; Maletic-Savatic, M.; Palzkill, T.; Moore, D.; Wang, M. C.; Wang, J.

10.1101/360362 — cell biology — Posted on 2018-07-01

2393 New formula and conversion factor to compute tree species basic wood density from a global wood technology database.

Vieilledent, G.; Fischer, F. J.; Chave, J.; Guibal, D.; Langbour, P.; Gerard, J.

10.1101/274068 — plant biology — Posted on 2018-07-01

2394 Regulation of Global Transcription in E. coli by Rsd and 6S RNA

Lal, A.; Krishna, S.; Seshasayee, A. S. N.

10.1101/058339 — genomics — Posted on 2018-07-01

2395 Genetic insight into zinc and antimicrobial toxicity uncovers a glycerol phosphate modification on streptococcal rhamnose polysaccharides

10.1101/337519 — microbiology — Posted on 2018-07-01

2396 DEET feet: Aedes aegypti mosquitoes use their tarsi to sense DEET on contact

Dennis, E. J.; Vosshall, L. B.

10.1101/360222 — neuroscience — Posted on 2018-07-01

2397 Antisense lncRNA transcription drives stochastic Protocadherin α promoter choice

Canzio, D.; Nwakeze, C.; Horta, A.; Rajkumar, S.; Coffey, E.; Duffy, E.; Duffie, R.; Simon, M.; Lomvardas, S.; Maniatis, T.

10.1101/360206 — genomics — Posted on 2018-07-01

2398 Market Smells: Odor Identification in the Built Environment

Hoover, K. C.; Roberts, J.; Berbesque, J. C.

10.1101/270744 — ecology — Posted on 2018-07-01

2399 Hematological and Serum Biochemical Analysis of Streptozotocin-Induced Insulin Dependent Diabetes Mellitus in Male Adult Wistar Rats

Yakhchalian, N.; Hatami, K.; Nosrati, H.; Yousofvand, N.

10.1101/359844 — pharmacology and toxicology — Posted on 2018-07-01

2400 Optimizing guide RNA selection and CRISPR/Cas9 methodology for efficient generation of deletions in C. elegans.

Au, V.; Li-Leger, E.; Raymant, G.; Flibotte, S.; Chen, G.; Martin, K.; Fernando, L.; Doell, C.; Rosell, F.; Wang, S.; Edgley, M.; Rougvie, A.; Hutter, H.; Moerman, D. G.

10.1101/359588 — genetics — Posted on 2018-07-01

2401 Citizen science data enhance spatio-temporal extent and resolution of animal population studies

Sun, C.; Fuller, A. K.; Hurst, J. E.

10.1101/352708 — ecology — Posted on 2018-07-01

2402 Heterosynaptic Plasticity Determines the Set-Point for Cortical Excitatory-Inhibitory Balance

Field, R.; D'amour, J.; Tremblay, R.; Miehl, C.; Rudy, B.; Gjorgjieva, J.; Froemke, R.

10.1101/282012 — neuroscience — Posted on 2018-07-01

2403 Study of mitotic chromatin supports a model of bookmarking by histone modifications and reveals nucleosome deposition patterns

Javasky, E.; Shamir, I.; Gandhi, S.; Egri, S.; Sandler, O.; Rothbart, S. B.; Kaplan, N.; Jaffe, J. D.; Goren, A.; Simon, I.

10.1101/233056 — genomics — Posted on 2018-07-01

2404 Unsupervised correction of gene-independent cell responses to CRISPR-Cas9 targeting

Iorio, F.; Behan, F. M.; Goncalves, E.; Bhosle, S.; Chen, E.; Shepherd, R.; Beaver, C.; Ansari, R.; Pooley, R.; Wilkinson, P.; Harper, S.; Butler, A. P.; Stronach, E.; Saez-Rodriguez, J.; Yusa, K.; Garnett, M. J.

10.1101/228189 — bioinformatics — Posted on 2018-07-01

Archive, 2018-07