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Archive, 2016-10

2 16S rRNA Gene Sequencing as a Clinical Diagnostic Aid for Gastrointestinal-related Conditions
Almonacid, D. E.; Kraal, L.; Ossandon, F. J.; Budovskaya, Y. V.; Cardenas, J. P.; Richman, J.; Apte, Z. S.
10.1101/084657 — microbiology — Posted on 2016-10-31
3 Latitudinal metacommunity gradients in New Zealand stream invertebrates
Tonkin, J. D.; Death, R. G.; Muotka, T.; Astorga, A.; Lytle, D. A.
10.1101/084673 — ecology — Posted on 2016-10-31
6 Enterovirus A119 in a child with Acute Flaccid Paralysis, Nigeria
Adeniji, J. A.; Oragwa, A. O.; George, U. E.; Ibok, U. I.; FALEYE, T. O. C.; Adewumi, M. O.
10.1101/084566 — epidemiology — Posted on 2016-10-31
8 Giardia colonizes and encysts in high density foci in the murine small intestine
Barash, N.; Nosala, C.; Pham, J. K.; McInally, S. G.; Gourguechon, S.; McCarthy-Sinclair, B.; Dawson, S. C.
10.1101/080226 — microbiology — Posted on 2016-10-31
13 Chromosome interactome inferred from mitosis-G1 transition
Eidelman, Y.; Slanina, S.; Aleshchenko, A.; Andreev, S.
10.1101/084608 — biophysics — Posted on 2016-10-31
14 Phenopolis: an open platform for harmonization and analysis of sequencing and phenotype data
Pontikos, N.; Yu, J.; Blanco-Kelly, F.; Vulliamy, T.; Wong, T. L.; Murphy, C.; Cipriani, V.; Fiorentino, A.; Arno, G.; Greene, D.; Jacobsen, J. O.; Clark, T.; Gregory, D. S.; Nemeth, A.; Halford, S.; Downes, S.; Black, G. C.; Webster, A. R.; Hardcastle, A.; Plagnol, V.
10.1101/084582 — bioinformatics — Posted on 2016-10-31
16 Power calculator for instrumental variable analysis in pharmacoepidemiology
Walker, V. M.; Davies, N. M.; Windmeijer, F.; Burgess, S.; Martin, R. M.
10.1101/084541 — epidemiology — Posted on 2016-10-31
18 The Real-time fMRI Neurofeedback Based Stratification of Default Network Regulation Neuroimaging Data Repository.
McDonald, A.; Muraskin, J.; Van Dam, N. T.; Froehlich, C.; Puccio, B.; Pellman, J.; Bauer, C. C.; Akeyson, A.; Breland, M.; Calhoun, V.; Carter, S.; Chang, T.; Gessner, C.; Giannone, A.; Giavasis, S.; Glass, J.; Homann, S.; King, M.; Kramer, M.; Landis, D.; Lieval, A.; Lisinski, J.; MacKay-Brandt, A.; Miller, B.; Panek, L.; Reed, H.; Santiago, C.; Schoell, E.; Sinning, R.; Sital, M.; Taverna, E.; Tobe, R.; Trautmann, K.; Varghese, B.; Walden, L.; Wang, R.; Waters, A. B.; Wood, D. C.; Castellanos, F. X.; Leventhal, B. L.; Colcombe, S. J.; LaConte, S. M.; Milham, M. P.; Craddock, R. C.
10.1101/075275 — neuroscience — Posted on 2016-10-31
23 Vertically transmitted rhabdoviruses are found across three insect families and have dynamic interactions with their hosts
Longdon, B.; Day, J.; Schulz, N.; Leftwich, P. T.; de Jong, M. A.; Breuker, C. J.; Gibbs, M.; Obbard, D. J.; Wilfert, L.; Smith, S. C.; McGonigle, J. E.; Houslay, T. M.; Wright, L. I.; Livraghi, L.; Evans, L. C.; Friend, L. A.; Chapman, T.; Vontas, J.; Kambouraki, N.; Jiggins, F. M.
10.1101/084558 — evolutionary biology — Posted on 2016-10-31
24 EuMicrobedbLite: A lightweight genomic resource and analytic platform for draft oomycete genomes
Panda, A.; Sen, D.; Ghosh, A.; Gupta, A.; Malar C, M.; Mishra, G. P.; Singh, D.; Ye, W.; Tyler, B. M.; Tripathy, S.
10.1101/084483 — bioinformatics — Posted on 2016-10-31
26 High temporal resolution of gene expression dynamics in developing mouse embryonic stem cells
Gloss, B. S.; Signal, B.; Cheetham, S. W.; Gruhl, F.; Kaczorowski, D.; Perkins, A. C.; Dinger, M. E.
10.1101/084442 — systems biology — Posted on 2016-10-31
35 The structured diversity of specialized gut symbionts of the New World army ants
Lukasik, P.; Newton, J. A.; Sanders, J. G.; Hu, Y.; Moreau, C.; Kronauer, D.; O'Donnell, S.; Koga, R.; Russell, J. A.
10.1101/084376 — evolutionary biology — Posted on 2016-10-30
39 Transcriptomic Description of an Endogenous Female State in C. elegans
Angeles-Albores, D.; Leighton, D. H. W.; Tsou, T.; Khaw, T. H.; Antoshechkin, I.; Sternberg, P.
10.1101/083113 — genetics — Posted on 2016-10-30
40 Non-polio enteroviruses in faeces of children diagnosed with acute flaccid paralysis in Nigeria.
FALEYE, T. O. C.; Adewumi, M. O.; Adeoti, M. O.; David, O. M.; Oluyege, A. O.; Adeniji, J. A.; Famurewa, O.
10.1101/084350 — epidemiology — Posted on 2016-10-30
41 MSMBuilder: Statistical Models for Biomolecular Dynamics
Harrigan, M. P.; Sultan, M. M.; Hernandez, C. X.; Husic, B. E.; Eastman, P.; Schwantes, C. R.; Beauchamp, K. A.; McGibbon, R. T.; Pande, V. S.
10.1101/084020 — biophysics — Posted on 2016-10-30
42 Functional consequences of pre- and postsynaptic expression of synaptic plasticity
Costa, R. P.; Mizusaki, B. E. P.; Sjostrom, P. J.; van Rossum, M. C. W.
10.1101/075317 — neuroscience — Posted on 2016-10-29
45 Constraints on eQTL fine mapping in the presence of multi-site local regulation of gene expression
Zeng, B.; Lloyd-Jones, L.; Holloway, A.; Marigorta, U. M.; Metspalu, A.; Montgomery, G. W.; Esko, T.; Brigham, K. L.; Quyyumi, A. A.; Idaghdour, Y.; Yang, J.; Visscher, P. M.; Powell, J. E.; Gibson, G.
10.1101/084293 — genetics — Posted on 2016-10-29
49 Genomic diagnosis for children with intellectual disability and/or developmental delay
Bowling, K. M.; Thompson, M. L.; Amaral, M. D.; Finnila, C. R.; Hiatt, S. M.; Engel, K. L.; Cochran, J. N.; Brothers, K. B.; East, K. M.; Gray, D. E.; Kelley, W. V.; Lamb, N. E.; Lose, E. J.; Rich, C. A.; Simmons, S.; Whittle, J. S.; Weaver, B. T.; Myers, R. M.; Barsh, G. S.; Bebin, E. M.; Cooper, G. M.
10.1101/084251 — genomics — Posted on 2016-10-28
56 Genomic diagnosis for children with intellectual disability and/or developmental delay
Bowling, K. M.; Thompson, M. L.; Amaral, M. D.; Finnila, C. R.; Hiatt, S. M.; Engel, K. L.; Cochran, J. N.; Brothers, K. B.; East, K. M.; Gray, D. E.; Kelley, W. V.; Lamb, N. E.; Lose, E. J.; Rich, C. A.; Simmons, S.; Whittle, J. S.; Weaver, B. T.; Myers, R. M.; Barsh, G. S.; Bebin, E. M.; Cooper, G. M.
10.1101/084251 — genomics — Posted on 2016-10-28
62 Accurate prediction of human essential genes using only nucleotide composition and association information
Guo, F.-B.; Dong, C.; Hua, H.-L.; Liu, S.; Luo, H.; Zhang, H.-W.; Jin, Y.-T.; Zhang, K.-Y.
10.1101/084129 — bioinformatics — Posted on 2016-10-28
69 PatternMarkers & GWCoGAPS for novel data-driven biomarkers via whole transcriptome NMF
Stein-O'Brien, G.; Carey, J.; Lee, W.-s.; Considine, M.; Favorov, A.; Flam, E.; Guo, T.; Li, L.; Marchionni, L.; Sherman, T.; Gaykalova, D.; McKay, R.; Ochs, M.; Colantuoni, C.; Fertig, E.
10.1101/083717 — bioinformatics — Posted on 2016-10-28
70 Structural and Functional analysis of the GABARAP Interaction Motif (GIM).
Rogov, V. V.; Stolz, A.; Ravicahandran, A. C.; Law, A.; Suzuki, H.; Kniss, A.; Rios-Szwed, D. O.; Loehr, F.; Wakatsuki, S.; Doetsch, V.; Dikic, I.; Dobson, R. C. J.; McEwan, D.
10.1101/083659 — biochemistry — Posted on 2016-10-28
71 The transcriptional repressor HIC1 regulates intestinal immune homeostasis
Burrows, K.; Antignano, F.; Bramhall, M.; Chenery, A.; Scheer, S.; Korinek, V.; Underhill, T. M.; Zaph, C.
10.1101/083873 — immunology — Posted on 2016-10-28
72 Metabarcoding of unfractionated water samples relates phyto-, zoo- and bacterioplankton dynamics and reveals a single taxon bacterial bloom
Wurzbacher, C.; Attermeyer, K.; Kettner, M. T.; Flintrop, C.; Warthmann, N.; Hilt, S.; Grossart, H.-P.; Monaghan, M. T.
10.1101/058628 — ecology — Posted on 2016-10-28
73 How polio vaccination affects poliovirus transmission
Famulare, M.; Chabot-Couture, G.; Eckhoff, P. A.; Lyons, H.; McCarthy, K. A.; Selinger, C.
10.1101/084012 — epidemiology — Posted on 2016-10-27
75 Transcriptomic Description of an Endogenous Female State in C. elegans
Angeles-Albores, D.; Leighton, D. H. W.; Tsou, T.; Khaw, T. H.; Antoshechkin, I.; Sternberg, P.
10.1101/083113 — genetics — Posted on 2016-10-27
76 MSMBuilder: Statistical Models for Biomolecular Dynamics
Harrigan, M. P.; Sultan, M. M.; Hernandez, C. X. X.; Husic, B. E.; Eastman, P.; Schwantes, C. R.; Beauchamp, K. A.; McGibbon, R. T.; Pande, V. S.
10.1101/084020 — biophysics — Posted on 2016-10-27
77 Transposable element exaptation is the primary source of novelty in the primate gene regulatory landscape
Trizzino, M.; Park, Y.; Holsbach-Beltrame, M.; Aracena, K.; Mika, K.; Caliskan, M.; Perry, G. H.; Lynch, V. J.; Brown, C. D.
10.1101/083980 — genomics — Posted on 2016-10-27
81 THE IDENTIFICATION OF SOURCE AND VECTOR OF A PROLIFIC MARINE INVADER
Krueger-Hadfield, S. A.; Kollars, N.; Strand, A.; Byers, J.; Shainker, S.; Terada, R.; Greig, T.; Hammann, M.; Murray, D.; Weinberger, F.; Sotka, E.
10.1101/083972 — evolutionary biology — Posted on 2016-10-27
83 Archaic adaptive introgression in TBX15/WARS2
Racimo, F.; Gokhman, D.; Fumagalli, M.; Ko, A.; Hansen, T.; Moltke, I.; Albrechtsen, A.; Carmel, L.; Huerta-Sanchez, E.; Nielsen, R.
10.1101/033928 — evolutionary biology — Posted on 2016-10-27
87 Recombination Suppression is Unlikely to Contribute to Speciation in Sympatric Heliconius Butterflies
Davey, J. W.; Barker, S. L.; Rastas, P. M.; Pinharanda, A.; Martin, S. H.; Durbin, R.; Merrill, R. M.; Jiggins, C. D.
10.1101/083931 — evolutionary biology — Posted on 2016-10-27
90 Time dependent genetic analysis links field and controlled environment phenotypes in the model C4 grass Setaria
Feldman, M. J.; Paul, R. E.; Banan, D.; Barrett, J. F.; Sebastian, J.; Yee, M.-C.; Jiang, H.; Lipka, A. E.; Brutnell, T. P.; Dinneny, J. R.; Leakey, A. D. B.; Baxter, I.
10.1101/083865 — plant biology — Posted on 2016-10-27
91 The successor representation in human reinforcement learning
Momennejad, I.; Russek, E. M.; Cheong, J. H.; Botvinick, M. M.; Daw, N.; Gershman, S. J.
10.1101/083824 — neuroscience — Posted on 2016-10-27
93 The transcriptional repressor HIC1 regulates intestinal immune homeostasis
Burrows, K.; Antignano, F.; Bramhall, M.; Chenery, A.; Scheer, S.; Korinek, V.; Underhill, T. M.; Zaph, C.
10.1101/083873 — immunology — Posted on 2016-10-27
94 Pooled CRISPR screening with single-cell transcriptome read-out
Datlinger, P.; Schmidl, C.; Rendeiro, A. F.; Traxler, P.; Klughammer, J.; Schuster, L.; Bock, C.
10.1101/083774 — genomics — Posted on 2016-10-27
95 Rare disruptive variants in the DISC1 Interactome and Regulome: association with cognitive ability and schizophrenia
Teng, S.; Thomson, P.; McCarthy, S.; Kramer, M.; Muller, S.; Lihm, J.; Morris, S.; Soares, D.; Hennah, W.; Harris, S.; Camargo, L. M.; Malkov, V.; McIntosh, A.; Millar, J. K.; Blackwood, D.; Evans, K.; Deary, I.; Porteous, D.; McCombie, W. R.
10.1101/083816 — genetics — Posted on 2016-10-27
96 Self assembly of HIV-1 Gag protein on lipid membranes generates PI(4,5)P2/Cholesterolnanoclusters.
Yandrapalli, N.; Lubart, Q.; Tanwar, H. S.; PICART, C.; Mak, J.; Muriaux, D.; Favard, C.
10.1101/081737 — biophysics — Posted on 2016-10-27
100 Physical basis of large microtubule aster growth
Ishihara, K.; Korolev, K. S.; Mitchison, T. J.
10.1101/055939 — biophysics — Posted on 2016-10-27
105 Inhibition of microbial biofuel production in drought stressed switchgrass hydrolysate
Ong, R. G.; Higbee, A.; Bottoms, S.; Dickinson, Q.; Xie, D.; Smith, S. A.; Serate, J.; Pohlmann, E.; Jones, A. D.; Coon, J. J.; Sato, T. K.; Sanford, G. R.; Eilert, D.; Oates, L. G.; Piotrowski, J. S.; Bates, D. M.; Cavalier, D.; Zhang, Y.
10.1101/083758 — microbiology — Posted on 2016-10-26
106 Analytical and Clinical Validity Study of FirstStepDx PLUS: A Chromosomal Microarray Optimized for Patients with Neurodevelopmental Conditions
Hensel, C. H.; Vanzo, R.; Martin, M.; Dixon, S.; Lambert, C. G.; Levy, B.; Nelson, L.; Peiffer, A.; Ho, K.; Mowery-Rushton, P.; Serrano, M.; South, S.; Ward, K.; Wassman, E. R.
10.1101/083741 — genomics — Posted on 2016-10-26
109 PatternMarkers and Genome-Wide CoGAPS Analysis in Parallel Sets (GWCoGAPS) for data-driven detection of novel biomarkers via whole transcriptome Non-negative matrix factorization (NMF)
Stein-O'Brien, G.; Carey, J.; Lee, W.-s.; Considine, M.; Favorov, A.; Flam, E.; Guo, T.; Li, L.; Marchionni, L.; Sherman, T.; Gaykalova, D.; McKay, R.; Ochs, M.; Colantuoni, C.; Fertig, E.
10.1101/083717 — bioinformatics — Posted on 2016-10-26
111 Microsaccadic information sampling provides Drosophila hyperacute vision
Juusola, M.; Dau, A.; Song, Z.; Solanki, N.; Rien, D.; Jaciuch, D.; Dongre, S.; Blanchard, F.; de Polavieja, G. G.; Hardie, R. C.; Takalo, J.
10.1101/083691 — neuroscience — Posted on 2016-10-26
115 Compromised External Validity: Federally Produced Cannabis Does Not Reflect Legal Markets
Vergara, D.; Bidwell, C.; Gaudino, R.; Torres, A.; Du, G.; Ruthenburg, T.; deCesare, K.; Land, D. P.; Hutchison, K. E.; Kane, N. C.
10.1101/083444 — plant biology — Posted on 2016-10-26
116 Lower brain pH as a shared endophenotype of psychotic disorders
Hagihara, H.; Catts, V. S.; Katayama, Y.; Takagi, T.; Huang, F. L.; Huang, K.-P.; Ishii, S.; Graef, I. A.; Crabtree, G. R.; Nakayama, K. I.; Weickert, C. S.; Miyakawa, T.
10.1101/083550 — neuroscience — Posted on 2016-10-26
118 UP-DOWN cortical dynamics reflect state transitions in a bistable balanced network
Jercog, D.; Roxin, A.; Bartho, P.; Luczak, A.; Compte, A.; de la Rocha, J.
10.1101/083626 — neuroscience — Posted on 2016-10-26
121 A structural variant encoding hybrid glycophorins is associated with resistance to severe malaria
Leffler, E. M.; Band, G.; Busby, G. B.; Kivinen, K.; Le, Q. S.; Clarke, G. M.; Bojang, K. A.; Conway, D. J.; Jallow, M.; Sisay-Joof, F.; Bougouma, E. C.; Mangano, V. D.; Modiano, D.; Sirima, S. B.; Achidi, E.; Apinjoh, T. O.; Marsh, K.; Ndila, C. M.; Peshu, N.; Williams, T. N.; Drakeley, C.; Manjurano, A.; Reyburn, H.; Riley, E.; Kachala, D.; Molyneux, M.; Nyirongo, V.; Taylor, T.; Thornton, N.; Tilley, L.; Grimsley, S.; Drury, E.; Stalker, J.; Cornelius, V.; Hubbart, C.; Jeffreys, A. E.; Rowlands, K.; Rockett, K. A.; Spencer, C. C.; Kwiatkowski, D. P.; Malaria Genomic Epidemiology Network,
10.1101/083634 — genomics — Posted on 2016-10-26
122 Exonic somatic mutations contribute risk for autism spectrum disorder
Krupp, D. R.; Barnard, R. A.; Duffourd, Y.; Evans, S.; Bernier, R.; Riviere, J.-B.; Fombonne, E.; O'Roak, B. J.
10.1101/083428 — genetics — Posted on 2016-10-26
123 Metafounders are Fst fixation indices and reduce bias in single step genomic evaluations
Garcia-Baccino, C. A.; Legarra, A.; Christensen, O. F.; Misztal, I.; Pocrnic, I.; Vitezica, Z. G.; Cantet, R. J. C.
10.1101/083675 — genetics — Posted on 2016-10-26
126 CENP-F couples cargo to growing and shortening microtubule ends
Kanfer, G.; Peterka, M.; Arzhanik, V. K.; Drobyshev, A. L.; Ataullakhanov, F. I.; Volkov, V. A.; Kornmann, B.
10.1101/083618 — cell biology — Posted on 2016-10-26
131 Genome-wide Analysis of Differential Transcriptional and Epigenetic Variability Across Human Immune Cell Types
Ecker, S.; Chen, L.; Pancaldi, V.; Bagger, F. O.; Fernandez, J. M.; Carrillo de Santa Pau, E.; Juan, D.; Mann, A.; Watt, S.; Casale, F. P.; Sidiropoulos, N.; Rapin, N.; Merkel, A.; BLUEPRINT Consortium, ; Stunnenberg, H.; Stegle, O.; Frontini, M.; Downes, K.; Pastinen, T.; Kuijpers, T. W.; Rico, D.; Valencia, A.; Beck, S.; Soranzo, N.; Paul, D. S.
10.1101/083246 — genomics — Posted on 2016-10-26
133 Crossover in the dynamics of cell wall growth controls Caulobacter division times
Banerjee, S.; Lo, K.; Selewa, A.; Kuntz, T.; Daddysman, M. K.; Dinner, A. R.; Scherer, N. F.
10.1101/047589 — biophysics — Posted on 2016-10-26
135 A population genomics approach to assessing the genetic basis of within-host microevolution underlying recurrent cryptococcal meningitis infection
Rhodes, J.; Beale, M.; Vanhove, M.; Jarvis, J. N.; Kannambath, S.; Simpson, J. A.; Ryan, A.; Meintjes, G.; Harrison, T. S.; Fisher, M.; Bicanic, T.
10.1101/083469 — genomics — Posted on 2016-10-26
140 Uncovering the underlying mechanisms and whole-brain dynamics of therapeutic deep brain stimulation for Parkinson’s disease
Saenger, V. M.; Kahan, J.; Foltynie, T.; Friston, K.; Aziz, T. Z.; Green, A. L.; van Hartevelt, T. J.; Stevner, A. B. A.; Fernandes, H. M.; Mancini, L.; Thornton, J.; Yousry, T.; Limousin, P.; Zrinzo, L.; Hariz, M.; Kringelbach, M. L.; Deco, G.
10.1101/083162 — neuroscience — Posted on 2016-10-25
141 Genome-wide Analysis of Differential Transcriptional and Epigenetic Variability Across Human Immune Cell Types
Ecker, S.; Chen, L.; Pancaldi, V.; Bagger, F. O.; Fernandez, J. M.; Carrillo de Santa Pau, E.; Juan, D.; Mann, A.; Watt, S.; Casale, F. P.; Sidiropoulos, N.; Rapin, N.; Merkel, A.; BLUEPRINT Consortium, ; Stunnenberg, H.; Stegle, O.; Frontini, M.; Downes, K.; Pastinen, T.; Kuijpers, T. W.; Rico, D.; Valencia, A.; Beck, S.; Soranzo, N.; Paul, D. S.
10.1101/083246 — molecular biology — Posted on 2016-10-25
143 Natural Selection has Shaped Coding and Non-coding Transcription in Primate CD4+ T-cells
Danko, C. G.; Wang, Z.; Rice, E. J.; Chu, T.; Martins, A. L.; Tait Wojno, E.; Lis, J. T.; Kraus, L. W.; Siepel, A.
10.1101/083212 — genomics — Posted on 2016-10-25
146 Experimental and Computational Investigation of the Structure of Peptide Monolayers on Gold Nanoparticles
Colangelo, E.; Chen, Q.; Davidson, A. M.; Paramelle, D.; Sullivan, M. B.; Volk, M.; Levy, R.
10.1101/083204 — biochemistry — Posted on 2016-10-25
148 The Effect of Compositional Context on Synthetic Gene Net-works
Yeung, E.; Dy, A. J.; Martin, K. B.; Ng, A. H.; Del Vecchio, D.; Beck, J. L.; Collins, J. J.; Murray, R. M.
10.1101/083329 — synthetic biology — Posted on 2016-10-25
152 The E. coli molecular phenotype under different growth conditions
Caglar, M. U.; Houser, J. R.; Barnhart, C. S.; Boutz, D. R.; Carroll, S. M.; Dasgupta, A.; Lenoir, W. F.; Smith, B. L.; Sridhara, V.; Sydykova, D. K.; Wood, D. V.; Marx, C. J.; Marcotte, E. M.; Barrick, J. E.; Wilke, C. O.
10.1101/082032 — bioinformatics — Posted on 2016-10-25
153 A compound that directly and selectively stalls PCSK9 translation
Lintner, N.; McClure, K.; Petersen, D.; Londregan, A.; Piotrowski, D.; Wei, L.; Xiao, J.; Bolt, M.; Loria, P.; Maguire, B.; Geoghegan, K.; Huang, A.; Rolph, T.; Liras, S.; Doudna, J.; Dullea, R.; Cate, J.
10.1101/083097 — systems biology — Posted on 2016-10-25
154 Scanning the Horizon: Towards transparent and reproducible neuroimaging research
Poldrack, R.; Baker, C. I.; Durnez, J.; Gorgolewski, K.; Matthews, P. M.; Munafo, M.; Nichols, T.; Poline, J.-B.; Vul, E.; Yarkoni, T.
10.1101/059188 — Scientific Communication and Education — Posted on 2016-10-25
157 The Drosophila pheromone Z4-11Al is encoded together with habitat olfactory cues and mediates species-specific communication
Lebreton, S.; Borrero-Echeverry, F.; Gonzalez, F.; Solum, M.; Wallin, E.; Hedenstroem, E.; Hansson, B. S.; Gustavsson, A.-L.; Bengtsson, M.; Birgersson, G.; Walker, W. B.; Dweck, H.; Becher, P. G.; Witzgall, P.
10.1101/083071 — animal behavior and cognition — Posted on 2016-10-25
159 A comprehensive survey of genetic variation in 20,691 subjects from four large cohorts
Lindstrom, S.; Loomis, S.; Turman, C.; Huang, H.; Huang, J.; Aschard, H.; Chan, A.; Choi, H.; Cornelis, M.; Curhan, G.; De Vivo, I.; Eliassen, H.; Fuchs, C.; Gaziano, M.; Hankinson, S.; Hu, F.; Jensen, M.; Kang, J. H.; Kabrhel, C.; Liang, L.; Pasquale, L.; Rimm, E.; Stampfer, M.; Tamimi, R.; Tworoger, S.; Wiggs, J.; Hunter, D.; Kraft, P.
10.1101/083030 — epidemiology — Posted on 2016-10-25
161 MathIOmica: An Integrative Platform for Dynamic Omics
Mias, G.; Yusufaly, T.; Roushangar, R.; Brooks, L. R. K.; Singh, V. V.; Christou, C.
10.1101/074260 — bioinformatics — Posted on 2016-10-25
162 normR: Regime enrichment calling for ChIP-seq data
Helmuth, J.; Li, N.; Arrigoni, L.; Gianmoena, K.; Cadenas, C.; Gasparoni, G.; Sinha, A.; Rosenstiel, P.; Walter, J.; Hengstler, J. G.; Manke, T.; Chung, H.-R.
10.1101/082263 — bioinformatics — Posted on 2016-10-25
163 A hierarchical Bayesian framework for understanding the spatiotemporal dynamics of the intestinal epithelium
Maclaren, O. J.; Parker, A.; Pin, C.; Carding, S. R.; Watson, A. J.; Fletcher, A. G.; Byrne, H. M.; Maini, P. K.
10.1101/072561 — systems biology — Posted on 2016-10-25
168 The role of evolutionary selection in the dynamics of protein structure evolution
Gilson, A. I.; Marshall-Christensen, A.; Choi, J.-M.; Shakhnovich, E. I.
10.1101/059741 — biophysics — Posted on 2016-10-25
178 Searching for the chromatin determinants of human hematopoiesis
Carrillo de Santa Pau, E.; Juan, D.; Pancaldi, V.; Were, F.; Martin-Subero, I.; Rico, D.; Valencia, A.
10.1101/082917 — genomics — Posted on 2016-10-24
180 p53 dynamically directs TFIID assembly on target gene promoters
Coleman, R. A.; Qiao, Z.; Singh, S. K.; Peng, C. S.; Cianfrocco, M.; Zhang, Z.; Song, L.; Piasecka, A.; Aldeborgh, H.; Basishvili, G.; Rice, W.; Liu, W.-L.
10.1101/083014 — biochemistry — Posted on 2016-10-24
181 Signatures of non-neutral processes within the population structure of Streptococcus pneumoniae
Lourenco, J.; Watkins, E. R.; Obolski, U.; Peacock, S. J.; Morris, C.; Maiden, M. C.; Gupta, S.
10.1101/082990 — epidemiology — Posted on 2016-10-24
182 Statistical and biological uncertainties associated with vaccine efficacy estimates and their implications for dengue vaccine impact projections
Perkins, A.; Reiner, R.; ten Bosch, Q.; Espana, G.; Verma, A.; Liebman, K.; Paz-Soldan, V.; Elder, J.; Morrison, A.; Stoddard, S.; Kitron, U.; Vazquez-Prokopec, G.; Scott, T.; Smith, D.
10.1101/082396 — epidemiology — Posted on 2016-10-24
183 Phylodynamics on local sexual contact networks
Rasmussen, D. A.; Kouyos, R.; Gunthard, H. F.; Stalder, T.
10.1101/082966 — epidemiology — Posted on 2016-10-24
185 The molecular mechanism of the type IVa pilus motors
McCallum, M.; Tammam, S.; Khan, A.; Burrows, L. L.; Howell, P. L.
10.1101/082750 — microbiology — Posted on 2016-10-24
186 Genome-wide association analyses of sleep disturbance traits identify new loci and highlight shared genetics with neuropsychiatric and metabolic traits
Lane, J. M.; Liang, J.; Vlasac, I.; Anderson, S. G.; Bechtold, D. A.; Bowden, J.; Emsley, R.; Gill, S.; Little, M. A.; Luik, A. I.; Loudon, A.; Scheer, F. A. J. L.; Purcell, S. M.; Kyle, S. D.; Lawlor, D. A.; Zhu, X.; Redline, S.; Ray, D. W.; Rutter, M. K.; Saxena, R.
10.1101/082792 — genetics — Posted on 2016-10-24
187 Mice deficient of Myc super-enhancer region reveal a differential control mechanism between normal and pathological growth
Dave, K.; Sur, I.; Yan, J.; Zhang, J.; Kaasinen, E.; Zhong, F.; Blaas, L.; Li, X.; Mansson, R.; Taipale, J.
10.1101/082602 — cancer biology — Posted on 2016-10-24
189 Phosphorus acquisition efficiency in arbuscular mycorrhizal maize is correlated with the abundance of root-external hyphae and the accumulation of transcripts encoding PHT1 phosphate transporters
Sawers, R. J. H.; Svane, S. F.; Quan, C.; Gronlund, M.; Wozniak, B.; Gonzalez-Munoz, E.; Chavez Montes, R.; Baxter, I.; Goudet, J.; Jakobsen, I.; Paszkowski, U.
10.1101/042028 — plant biology — Posted on 2016-10-24
190 High-risk human papillomavirus in oral cavity squamous cell carcinoma
Palve, V.; Bagwan, J.; Krishnan, N. M.; Pareek, M.; Chandola, U.; Suresh, A.; Siddappa, G.; James, B. L.; Kekatpure, V.; Kuriakose, M. A.; Panda, B.
10.1101/082651 — cancer biology — Posted on 2016-10-24
191 normR: Regime enrichment calling for ChIP-seq data
Helmuth, J.; Li, N.; Arrigoni, L.; Gianmoena, K.; Cadenas, C.; Gasparoni, G.; Sinha, A.; Rosenstiel, P.; Walter, J.; Hengstler, J. G.; Manke, T.; Chung, H.-R.
10.1101/082263 — bioinformatics — Posted on 2016-10-24
193 GSKB: A gene set database for pathway analysis in mouse
Lai, L.; Hennessey, J.; Bares, V.; Son, E. W.; Ban, Y.; Wang, W.; Qi, J.; Jiang, G.; Liberzon, A.; Ge, S.
10.1101/082511 — bioinformatics — Posted on 2016-10-24
194 LR-DNase: Predicting TF binding from DNase-seq data
van der Velde, A. G.; Purcaro, M.; Noble, W. S.; Weng, Z.
10.1101/082594 — bioinformatics — Posted on 2016-10-24
198 Perceptual integration without conscious access
Fahrenfort, J. J.; van Leeuwen, J.; Olivers, C. N. L.; Hogendoorn, H.
10.1101/060079 — neuroscience — Posted on 2016-10-24
199 The neural correlates of dreaming
Siclari, F.; Baird, B.; Perogamvros, L.; Bernardi, G.; LaRocque, J. J.; Riedner, B.; Boly, M.; Postle, B. R.; Tononi, G.
10.1101/012443 — neuroscience — Posted on 2016-10-24
200 Oscillatory integration windows in neurons
Gupta, N.; Saran Singh, S. S.; Stopfer, M.
10.1101/081471 — neuroscience — Posted on 2016-10-24
201 Functional and non-functional classes of peptides produced by long non-coding RNAs
Ruiz-Orera, J.; Verdaguer-Grau, P.; Villanueva-Canas, J. L.; Messeguer, X.; Alba, M. M.
10.1101/064915 — evolutionary biology — Posted on 2016-10-24
204 Structure and origin of the White Cap locus and its role in evolution of grain color in maize
Tan, B.-C.; Guan, J.-C.; Ding, S.; Wu, S.; Saunders, J. W.; Koch, K. E.; McCarty, D. R.
10.1101/082677 — genetics — Posted on 2016-10-24
205 CASTOR: A machine learning platform for reproducible viral genome classification
Remita, M. A.; Halioui, A.; Diouara, A. A. M.; Daigle, B.; Kiani, G.; Diallo, A. B.
10.1101/082768 — bioinformatics — Posted on 2016-10-24
210 The E. coli molecular phenotype under different growth conditions
Caglar, M. U.; Houser, J. R.; Barnhart, C. S.; Boutz, D. R.; Carroll, S. M.; Dasgupta, A.; Lenoir, W. F.; Smith, B. L.; Sridhara, V.; Sydykova, D. K.; Wood, D. V.; Marx, C. J.; Marcotte, E. M.; Barrick, J. E.; Wilke, C. O.
10.1101/082032 — bioinformatics — Posted on 2016-10-23
218 High-risk human papillomavirus in oral cavity squamous cell carcinoma
Palve, V.; Bagwan, J.; Krishnan, N. M.; Pareek, M.; Chandola, U.; Suresh, A.; Siddappa, G.; James, B. L.; Kekatpure, V.; Kuriakose, M. A.; Panda, B.
10.1101/082651 — cancer biology — Posted on 2016-10-22
219 Benzoate and Salicylate Tolerant Strains Lose Antibiotic Resistance during Laboratory Evolution of Escherichia coli K-12
Creamer, K. E.; Ditmars, F. S.; Basting, P. J.; Kunka, K. S.; Hamdallah, I. N.; Bush, S. P.; Scott, Z.; He, A.; Penix, S. R.; Gonzales, A. S.; Eder, E. K.; Camperchioli, D.; Berndt, A.; Clark, M. W.; Rouhier, K. A.; Slonczewski, J. L.
10.1101/063271 — microbiology — Posted on 2016-10-22
222 The CARD-CC/Bcl10/paracaspase signaling complex is functionally conserved since the last common ancestor of planulozoa.
Staal, J.; Driege, Y.; Borghi, A.; Hulpiau, P.; Lievens, L.; Gul, I.; Sundararaman, S.; Goncalves, A.; Dhondt, I.; Braeckman, B.; Technau, U.; Saeys, Y.; Van Roy, F.; Beyaert, R.
10.1101/046789 — evolutionary biology — Posted on 2016-10-22
224 Methods for detecting co-mutated pathways in cancer samples to inform treatment selection
Jiang, T.; Shaham, U.; Parisi, F.; Halaban, R.; Safonov, A.; Kluger, H.; Weissman, S.; Chang, J.; Kluger, Y.
10.1101/082552 — bioinformatics — Posted on 2016-10-22
225 Studying vertical microbiome transmission from mothers to infants by strain-level metagenomic profiling
Asnicar, F.; Manara, S.; Zolfo, M.; Truong, D. T.; Scholz, M.; Armanini, F.; Ferrretti, P.; Gorfer, V.; Pedrotti, A.; Tett, A.; Segata, N.
10.1101/081828 — microbiology — Posted on 2016-10-21
226 The genome-wide transcriptional response to varying RpoS levels in Escherichia coli K-12
Wong, G. T.; Bonocora, R. P.; Schep, A. N.; Beeler, S. M.; Lee, A.; Shull, L.; Batachari, L.; Dillon, M.; Evans, C.; Hardin, J.; Wade, J. T.; Stoebel, D. M.
10.1101/082537 — microbiology — Posted on 2016-10-21
232 Reverse-engineering human olfactory perception from chemical features of odor molecules
Keller, A.; Gerkin, R. C.; Guan, Y.; Dhurandhar, A.; Turu, G.; Szalai, B.; Mainland, J. D.; Ihara, Y.; Yu, C. W.; Wolfinger, R.; Vens, C.; Schietgat, L.; De Grave, K.; Norel, R.; DREAM Olfaction Prediction Challenge Consortium, ; Stolovitzky, G.; Cecchi, G.; Vosshall, L. B.; Meyer, P.
10.1101/082495 — neuroscience — Posted on 2016-10-21
233 Regulation of sleep plasticity by a thermo-sensitive circuit in Drosophila
Lamaze, A.; Ozturk-Colak, A.; Fischer, R.; Peschel, N.; Koh, K.; Jepson, J. E. C.
10.1101/082487 — neuroscience — Posted on 2016-10-21
237 The human functional genome defined by genetic diversity
di Iulio, J.; Bartha, I.; Wong, E.; Yu, H.-C.; Hicks, M.; Shah, N.; Lavrenko, V.; Kirkness, E.; Fabani, M.; Yang, D.; Jung, I.; Biggs, W.; Ren, B.; Venter, J. C.; Telenti, A.
10.1101/082362 — genomics — Posted on 2016-10-21
238 Empirical Bayes estimation of semi-parametric hierarchical mixture models for unbiased characterization of polygenic disease architectures
nishino, j.; Kochi, Y.; Shigemizu, D.; Kato, M.; Ikari, K.; Ochi, H.; Noma, H.; Matsui, K.; Morizono, T.; Boroevich, K. A. A.; Tsunoda, T.; Matsui, S.
10.1101/080945 — genomics — Posted on 2016-10-21
244 Giardia colonizes and encysts in high density foci in the murine small intestine
Barash, N.; Nosala, C.; Pham, J. K.; McInally, S. G.; Gourguechon, S.; McCarthy-Sinclair, B.; Dawson, S. C.
10.1101/080226 — microbiology — Posted on 2016-10-21
246 Predicting off-target effects for end-to-end CRISPR guide design
Listgarten, J.; Weinstein, M.; Elibol, M.; Hoang, L.; Doench, J.; Fusi, N.
10.1101/078253 — bioinformatics — Posted on 2016-10-21
247 Integrative pharmacogenomics to infer large-scale drug taxonomy
El-Hachem, N.; Gendoo, D. M. A.; Ghoraie, L. S.; Safikhani, Z.; Smirnov, P.; Isserlin, R.; Bader, G. D.; Goldenberg, A.; Haibe-Kains, B.
10.1101/046219 — bioinformatics — Posted on 2016-10-21
251 First report of the East-Central South African Genotype of Chikungunya Virus in Rio de Janeiro, Brazil
de Souza, T. M.; de Azeredo, E. L.; da Silva, J. B. C.; Damasco, P. V.; Santos, C. C.; de Paiva, F. P.; Nunes, P. C. G.; Barbosa, L. S.; Cipitelli, M. d. C.; Chouin Carneiro, T.; Faria, N. R. d. C.; Nogueira, R. M. R.; de Bruycker-Nogueira, F.; dos Santos, F. B.
10.1101/082131 — microbiology — Posted on 2016-10-20
252 The E. coli molecular phenotype under different growth conditions
CAGLAR, M. U. U.; HOUSER, J. R.; Barnhart, C. S.; Boutz, D. R.; Carroll, S. M.; Dasgupta, A.; Lenoir, W. F.; Smith, B. L.; Sridhara, V.; Sydykova, D. K.; Wood, D. V.; Marx, C. J.; Marcotte, E. M.; Barrick, J. E.; Wilke, C. O.
10.1101/082032 — bioinformatics — Posted on 2016-10-20
256 Potent optogenetic inhibition of behavior with anion channelrhodopsins
Mohammad, F.; Stewart, J.; Ott, S.; Chlebikova, K.; Chua, J. Y.; Koh, T.-W.; Ho, J.; Claridge-Chang, A.
10.1101/082255 — neuroscience — Posted on 2016-10-20
257 Metabolomic and proteomic analyses of a quiescent Escherichia coli cell factory reveal the mechanisms behind its production efficiency
Thomson, N. M.; Shirai, T.; Chiapello, M.; Kondo, A.; Mukherjee, K. J.; Sivaniah, E.; Summers, D. K.; Numata, K.
10.1101/082305 — microbiology — Posted on 2016-10-20
259 Transcriptional landscape of cell lines and their tissues of origin
Lopes-Ramos, C. M.; Paulson, J. N.; Chen, C.-Y.; Kuijjer, M. L.; Fagny, M.; Platig, J.; Sonawane, A. R.; DeMeo, D. L.; Quackenbush, J.; Glass, K.
10.1101/082065 — genomics — Posted on 2016-10-20
261 Chimeric Genes Revealed in the Polyploidy Fish Hybrids of Carassius cuvieri (Female) x Megalobrama amblycephala (Male)
Hu, F.; Wu, C.; Zhou, Y.; Wang, S.; Xiao, J.; Wu, Y.; Xu, K.; Ren, L.; Liu, Q.; Li, W.; Wen, M.; Tao, M.; Qin, Q.; Zhao, R.; Luo, K.; Liu, S.
10.1101/082222 — developmental biology — Posted on 2016-10-20
262 normR: Regime enrichment calling for ChIP-seq data
Helmuth, J.; Li, N.; Arrigoni, L.; Gianmoena, K.; Cadenas, C.; Gasparoni, G.; Sinha, A.; Rosenstiel, P.; Walter, J.; Hengstler, J. G.; Manke, T.; Chung, H.-R.
10.1101/082263 — bioinformatics — Posted on 2016-10-20
266 Striking differences in patterns of germline mutation between mice and humans
Lindsay, S. J.; Rahbari, R.; Kaplanis, J.; Keane, T.; Hurles, M.
10.1101/082297 — genomics — Posted on 2016-10-20
267 Sexual dimorphism in gene expression and regulatory networks across human tissues
Chen, C.-Y.; Lopes-Ramos, C. M.; Kuijjer, M. L.; Paulson, J. N.; Sonawane, A. R.; Fagny, M.; Platig, J.; Glass, K.; Quackenbush, J.; DeMeo, D. L.
10.1101/082289 — genomics — Posted on 2016-10-20
268 Tissue-aware RNA-Seq processing and normalization for heterogeneous and sparse data
Paulson, J.; Chen, C.-Y.; Lopes-Ramos, C. M.; Kuijjer, M. L.; Platig, J.; Sonawane, A. R.; Fagny, M.; Glass, K.; Quackenbush, J.
10.1101/081802 — bioinformatics — Posted on 2016-10-20
272 Ancestral genome reconstruction reveals the history of ecological diversification in Agrobacterium.
Lassalle, F.; Planel, R.; Penel, S.; Chapulliot, D.; Barbe, V.; Dubost, A.; Calteau, A.; Vallenet, D.; Mornico, D.; Bigot, T.; Gueguen, L.; Vial, L.; Muller, D.; Daubin, V.; Nesme, X.
10.1101/034843 — evolutionary biology — Posted on 2016-10-20
273 BIDS Apps: Improving ease of use, accessibility and reproducibility of neuroimaging data analysis methods
Gorgolewski, K. J.; Alfaro-Almagro, F.; Auer, T.; Bellec, P.; Capota, M.; Chakravarty, M. M.; Churchill, N. W.; Craddock, R. C.; Devenyi, G. A.; Eklund, A.; Esteban, O.; Flandin, G.; Ghosh, S. S.; Guntupalli, J. S.; Jenkinson, M.; Keshavan, A.; Kiar, G.; Raamana, P. R.; Raffelt, D.; Steele, C. J.; Quirion, P.-O.; Smith, R. E.; Strother, S. C.; Varoquaux, G.; Yarkoni, T.; Wang, Y.; Poldrack, R. A.
10.1101/079145 — neuroscience — Posted on 2016-10-20
277 Climate change promotes hybridisation between deeply divergent species of European toads
Canestrelli, D.; Bisconti, R.; Chiocchio, A.; Maiorano, L.; Zampiglia, M.; Nascetti, G.
10.1101/066258 — evolutionary biology — Posted on 2016-10-19
278 Portable and Error-Free DNA-Based Data Storage
Tabatabaei Yazdi, S. M. H.; Gabrys, R.; Milenkovic, O.
10.1101/079442 — bioinformatics — Posted on 2016-10-19
283 Linkage disequilibrium dependent architecture of human complex traits reveals action of negative selection
Gazal, S.; Finucane, H.; Furlotte, N. A.; Loh, P.-R.; Palamara, P. F.; Liu, X.; Schoech, A.; Bulik-Sullivan, B.; Neale, B. M.; Gusev, A.; Price, A. L.
10.1101/082024 — genetics — Posted on 2016-10-19
287 Reactive Oxygen Species Regulate Activity-Dependent Neuronal Structural Plasticity
Oswald, M. C. W.; Brooks, P. S.; Zwart, M. F.; Mukherjee, A.; West, R. J. H.; Morarach, K.; Sweeney, S. T.; Landgraf, M.
10.1101/081968 — neuroscience — Posted on 2016-10-19
289 Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and brain anatomy
Warrier, V.; Grasby, K.; Uzefovsky, F.; Toro, R.; Smith, P.; Chakrabarti, B.; Khadake, J.; Litterman, N.; Hottenga, J.-J.; Lubke, G.; Boomsma, D. I.; Martin, N. G.; Hatemi, P. K.; Medland, S. E.; Hinds, D. A.; Bourgeron, T.; Baron-Cohen, S.
10.1101/081844 — genetics — Posted on 2016-10-19
291 ULTRAFAST LASER-PROBING SPECTROCOPY FOR STUDYING MOLECULAR STRUCTURE OF POLYMERIC PROTEINS
Jung, H.; Szwejkowski, C.; Pena-Francesch, A.; Allen, B.; Ozdemir, S.; Hopkins, P.; Demirel, M.
10.1101/081943 — biophysics — Posted on 2016-10-19
292 Combining transcription factor binding affinities with open-chromatin data for accurate gene expression prediction
Schmidt, F.; Gasparoni, N.; Gasparoni, G.; Gianmoena, K.; Cadenas, C.; Polansky, J. K.; Ebert, P.; Nordstroem, K.; Barann, M.; Sinha, A.; Froehler, S.; Xiong, J.; Amirabad, A. D.; Ardakani, F. B.; Hutter, B.; Zipprich, G.; Felder, B.; Eils, J.; Brors, B.; Chen, W.; Hengstler, J. G.; Hamann, A.; Lengauer, T.; Rosenstiel, P.; Walter, J.; Schulz, M. H.
10.1101/081935 — bioinformatics — Posted on 2016-10-19
296 Kinematic analysis of cell lineage reveals coherent and robust mechanical deformation patterns in zebrafish gastrulation
Pastor-Escuredo, D.; Lombardot, B.; Savy, T.; Boyreau, A.; Goicolea, J. M.; Santos, A.; Bourgine, P.; del Alamo, J. C.; Peyrieras, N.; Ledesma-Carbayo, M. J.
10.1101/054353 — systems biology — Posted on 2016-10-19
297 Design Specifications for Cellular Regulation
Krakauer, D. C.; Mueller, L.; Prohaska, S. J.; Stadler, P. F.
10.1101/081729 — systems biology — Posted on 2016-10-18
302 Challenging the Raunkiaeran shortfall and the consequences of using imputed databases
Jardim, L. L. C. Z.; M. Bini, L.; Alexandre F. Diniz-Filho, J.; Villalobos, F.
10.1101/081778 — evolutionary biology — Posted on 2016-10-18
303 Extinction rate has a complex and non-linear relationship with area
Keil, P.; Cabral, J. S.; Chase, J.; Martins, I. S.; May, F.; Pereira, H. M.; Winter, M.
10.1101/081489 — ecology — Posted on 2016-10-18
309 False Negatives Are a Significant Feature of Next Generation Sequencing Callsets
Bobo, D.; Lipatov, M.; Rodriguez-Flores, J. L.; Auton, A.; Henn, B. M.
10.1101/066043 — bioinformatics — Posted on 2016-10-18
325 Artificial Microbiome-Selection to Engineer Microbiomes That Confer Salt-Tolerance to Plants
Mueller, U. G.; Juenger, T.; Kardish, M.; Carlson, A.; Burns, K.; Smith, C.; De Marais, D.
10.1101/081521 — plant biology — Posted on 2016-10-17
333 Deconstructing cell size control into physiological modules in Escherichia coli
Si, F.; Li, D.; Cox, S. E.; Sauls, J. T.; Azizi, O.; Schwartz, A. B.; Erickstad, M. J.; Jun, Y.; Li, X.; Jun, S.
10.1101/081422 — microbiology — Posted on 2016-10-17
335 HOMINID: A framework for identifying associations between host genetic variation and microbiome composition
Lynch, J.; Tang, K.; Sands, J.; Sands, M.; Tang, E.; Mukherjee, S.; Knights, D.; Blekhman, R.
10.1101/081323 — genomics — Posted on 2016-10-17
336 Rapid evolution of female-biased genes among four species of Anopheles malaria mosquitoes
Papa, F.; Windbichler, N.; Waterhouse, R. M.; Cagnetti, A.; D'Amato, R.; Presampieri, T.; Lawniczak, M. K. N.; Nolan, T.; Papathanos, P. A. A.
10.1101/081620 — genomics — Posted on 2016-10-17
339 SweGen: A whole-genome map of genetic variability in a cross-section of the Swedish population
Ameur, A.; Dahlberg, J.; Olason, P.; Vezzi, F.; Karlsson, R.; Lundin, P.; Che, H.; Thutkawkorapin, J.; Kusalananda Kahari, A.; Dahlberg, M.; Viklund, J.; Hagberg, J.; Jareborg, N.; Jonasson, I.; Johansson, A.; Lundin, S.; Nilsson, D.; Nystedt, B.; Magnusson, P.; Gyllensten, U.
10.1101/081505 — genetics — Posted on 2016-10-17
340 Deep Learning for Imaging Flow Cytometry: Cell Cycle Analysis of Jurkat Cells
Eulenberg, P.; Koehler, N.; Blasi, T.; Filby, A.; Carpenter, A. E.; Rees, P.; Theis, F. J.; Wolf, F. A.
10.1101/081364 — cell biology — Posted on 2016-10-17
344 Semi-automated genome annotation using epigenomic data and Segway
Roberts, E. G.; Mendez, M.; Viner, C.; Karimzadeh, M.; Chan, R. C. W.; Ancar, R.; Chicco, D.; Hesselberth, J. R.; Kundaje, A.; Hoffman, M. M.
10.1101/080382 — bioinformatics — Posted on 2016-10-17
353 A bacterial chaperone is required for plastid function in malaria parasites
Florentin, A.; Cobb, D. W.; Fishburn, J. D.; Kim, P. S.; Fierro, M. A.; Muralidharan, V.
10.1101/080408 — microbiology — Posted on 2016-10-17
357 Reproducibility and replicability of rodent phenotyping in preclinical studies
Kafkafi, N.; Agassi, J.; Chesler, E. J.; Crabbe, J. C.; Crusio, W. E.; Eilam, D.; Gerlai, R.; Golani, I.; Gomez-Marin, A.; Heller, R.; Iraqi, F.; Jaljuli, I.; Karp, N. A.; Morgan, H.; Nicholson, G.; Pfaff, D. W.; Richter, H. S.; Stark, P. B.; Stiedl, O.; Stodden, V.; Tarantino, L. M.; Tucci, V.; Valdar, W.; Williams, R. W.; Wurbel, H.; Benjamini, Y.
10.1101/079350 — Scientific Communication and Education — Posted on 2016-10-17
358 Systematic comparison of monoclonal versus polyclonal antibodies for mapping histone modifications by ChIP-seq
Busby, M.; Xue, C.; Li, C.; Farjoun, Y.; Gienger, E.; Yofe, I.; Gladden, A.; Epstein, C. B.; Cornett, E. M.; Rothbart, S. B.; Nusbaum, C.; Goren, A.
10.1101/054387 — genomics — Posted on 2016-10-17
362 Computational study of the impacts of mechanical and physical cell properties on mitotic cell rounding in developing epithelia
Nematbakhsh, A.; Sun, W.; Brodskiy, P. A.; Amiri, A.; Narciso, C.; Xu, Z.; Zartman, J. J.; Alber, M. S.
10.1101/037820 — biophysics — Posted on 2016-10-17
368 Measuring speaker-listener neural coupling with functional near infrared spectroscopy
Liu, Y.; Piazza, E. A.; Simony, E.; Shewokis, P. A.; Onaral, B.; Hasson, U.; Ayaz, H.
10.1101/081166 — neuroscience — Posted on 2016-10-16
372 A sensitized mutagenesis screen in Factor V Leiden mice identifies novel thrombosis suppressor loci
Westrick, R. J.; Tomberg, K.; Siebert, A. E.; Zhu, G.; Winn, M. E.; Dobies, S. L.; Manning, S. L.; Brake, M. A.; Cleuren, A.; Mishack, L. M.; Hobbs, L. M.; Johnston, A.; Siemieniak, D. R.; Xu, J.; Li, J. Z.; Ginsburg, D.
10.1101/080432 — genetics — Posted on 2016-10-16
377 Loss of the habenula neuromodulator Kisspeptin1 disrupts learning
Lupton, C.; Sengupta, M.; Cheng, R.-K.; Chia, J.; Thirumalai, V.; Jesuthasan, S.
10.1101/080994 — animal behavior and cognition — Posted on 2016-10-15
380 Systematic Design and Comparison of Expanded Carrier Screening Panels
Beauchamp, K. A.; Muzzey, D.; Wong, K. K.; Hogan, G. J.; Karimi, K.; Candille, S. I.; Mehta, N.; Mar-Heyming, R.; Kang, H. P.; Evans, E. A.; Goldberg, J. D.; Lazarin, G. A.; Haque, I. S.
10.1101/080713 — genetics — Posted on 2016-10-15
381 Evaluating the accuracy of genomic prediction of growth and wood traits in two Eucalyptus species and their F1 hybrids
Tan, B.; Grattapaglia, D.; Salgado Martins, G.; Zamprogno Ferreira, K.; Sundberg, B.; Ingvarsson, P. K.
10.1101/081281 — genetics — Posted on 2016-10-15
386 Temporal order of Alzheimer’s disease-related cognitive marker changes in BLSA and WRAP longitudinal studies
Bilgel, M.; Koscik, R. L.; An, Y.; Prince, J. L.; Resnick, S. M.; Johnson, S. C.; Jedynak, B. M.
10.1101/081174 — neuroscience — Posted on 2016-10-14
387 Discovering event structure in continuous narrative perception and memory
Baldassano, C.; Chen, J.; Zadbood, A.; Pillow, J. W.; Hasson, U.; Norman, K. A.
10.1101/081018 — neuroscience — Posted on 2016-10-14
390 Extrachromosal DNA elements can drive disease evolution in glioblastoma
deCarvalho, A. C.; Kim, H.; Poisson, L. M.; Winn, M. E.; Mueller, C.; Cherba, D.; Koeman, J.; Seth, S.; Protopopov, A.; Felicella, M.; Zheng, S.; Zhang, J.; Petricoin, E. F.; Chin, L.; Mikkelsen, T.; Verhaak, R.
10.1101/081158 — cancer biology — Posted on 2016-10-14
393 Motivational, proteostatic and transcriptional deficits precede synapse loss, gliosis and neurodegeneration in the B6.HttQ111/+ model of Huntington’s disease
Bragg, R. M.; Coffey, S. R.; Weston, R. M.; Ament, S. A.; Cantle, J. P.; Minnig, S.; Funk, C. C.; Shuttleworth, D. D.; Woods, E. L.; Sullivan, B. R.; Jones, L.; Glickenhaus, A.; Anderson, J. S.; Anderson, M. D.; Dunnett, S. B.; Wheeler, V. C.; MacDonald, M. E.; Brooks, S. P.; Price, N. D.; Carroll, J. B.
10.1101/081109 — neuroscience — Posted on 2016-10-14
397 Benchmarking substrate-based kinase activity inference using phosphoproteomic data
Hernandez-Armenta, C.; Ochoa, D.; Goncalves, E.; Saez-Rodriguez, J.; Beltrao, P.
10.1101/080978 — bioinformatics — Posted on 2016-10-14
400 A cryptography-based approach for movement decoding
Dyer, E. L.; Gheshlaghi Azar, M.; Fernandes, H. L.; Perich, M.; Naufel, S.; Miller, L.; Kording, K.
10.1101/080861 — neuroscience — Posted on 2016-10-14
403 Rapid and consistent evolution of colistin resistance in Pseudomonas aeruginosa during morbidostat culture
Regenbogen, B.; Willmann, M.; Steglich, M.; Bunk, B.; Nubel, U.; Peter, S.; Neher, R. A.
10.1101/080960 — microbiology — Posted on 2016-10-14
415 Loss of the habenula neuromodulator Kisspeptin1 disrupts learning
Lupton, C.; Sengupta, M.; Cheng, R.-K.; Chia, J.; Thirumalai, V.; Jesuthasan, S.
10.1101/080994 — animal behavior and cognition — Posted on 2016-10-14
417 An improved de novo pipeline for enrichment of high diversity mitochondrial genomes from Amphibia to high-throughput sequencing
Chen, X.; Ni, G.; He, K.; Ding, Z.-L.; Li, G.-M.; Adeola, A. C.; Murphy, R. W.; Wang, W.-Z.; Zhang, Y.-P.
10.1101/080689 — genomics — Posted on 2016-10-14
420 Feasibility Study of an Optical Caustic Plasmonic Light Scattering Sensor for Human Serum Anti-Dengue Protein E Antibody Detection
Garcia, A. A.; Franco, L. S.; Pirez-Gomez, M. A.; Pech-Pacheco, J. L.; Mendez-Galvan, J. F.; Machain-Williams, C.; Talavera-Aguilar, L.; Espinosa-Carrillo, J. H.; Duarte-Villasenor, M. M.; Be Ortiz, C. J.; Espinosa de los Monteros, L. E.; Castillo-Pacheco, A.; Garcia-Rejon, J. E.; Chavez, B.
10.1101/080218 — bioengineering — Posted on 2016-10-13
421 Linking structure and activity in nonlinear spiking networks
Ocker, G. K.; Josić, K.; Shea-Brown, E.; Buice, M. A.
10.1101/080705 — neuroscience — Posted on 2016-10-13
423 Bayesian Analysis of High Throughput Data
Ma, E.; Hussein, I.; Zhong, V.; Bandoro, C.; Runstadler, J.
10.1101/079525 — Scientific Communication and Education — Posted on 2016-10-13
424 Linking gene expression to unilateral pollen-pistil reproductive barriers
Broz, A. K.; Guerrero, R. F.; Randle, A. M.; Baek, Y. S.; Hahn, M. W.; Bedinger, P. A.
10.1101/080663 — plant biology — Posted on 2016-10-13
426 SIRVs: Spike-In RNA Variants as External Isoform Controls in RNA-Sequencing
Paul, L.; Kubala, P.; Horner, G.; Ante, M.; Hollaender, I.; Alexander, S.; Reda, T.
10.1101/080747 — molecular biology — Posted on 2016-10-13
427 An improved assembly and annotation of the allohexaploid wheat genome identifies complete families of agronomic genes and provides genomic evidence for chromosomal translocations.
Clavijo, B. J.; Venturini, L.; Schudoma, C.; Garcia Accinelli, G.; Kaithakottil, G.; Wright, J.; Borrill, P.; Kettleborough, G.; Heavens, D.; Chapman, H.; Lipcombe, J.; Barker, T.; Lu, F.-H.; McKenzie, N.; Raats, D.; Ramirez Gonzalez, R. H.; Coince, A.; Peel, N.; Percival-Alwyn, L.; Duncan, O.; Trosch, J.; Yu, G.; Bolser, D.; Naamati, G.; Kerhornou, A.; Spannagl, M.; Gundlach, H.; Haberer, G.; Davey, R. P.; Fosker, C.; Di Palma, F.; Phillips, A.; Millar, A. H.; Kersey, P. J.; Uauy, C.; Krasileva, K. V.; Swarbreck, D.; Bevan, M. W.; Clark, M. D.
10.1101/080796 — genomics — Posted on 2016-10-13
428 An improved de novo pipeline for enrichment of high diversity mitochondrial genomes from Amphibia to high-throughput sequencing
Chen, X.; Ni, ; He, K.; Ding, Z.-L.; Li, G.-M.; Adeola, A. C.; Murphy, R.; Wang, W.-Z.; Zhang, Y.-P.
10.1101/080689 — genomics — Posted on 2016-10-13
429 Chironomus riparius (Diptera) genome sequencing reveals the impact of minisatellite transposable elements on population divergence
Oppold, A.-M.; Schmidt, H.; Rose, M.; Hellmann, S. L.; Dolze, F.; Ripp, F.; Weich, B.; Schmidt-Ott, U.; Schmidt, E.; Kofler, R.; Hankeln, T.; Pfenninger, M.
10.1101/080721 — genomics — Posted on 2016-10-13
430 The rate of false polymorphisms introduced when imputing genotypes from global imputation panels
Surakka, I.; Sarin, A.-P.; Ruotsalainen, S. E.; Durbin, R.; Salomaa, V.; Daly, M.; Palotie, A.; Ripatti, S.
10.1101/080770 — genetics — Posted on 2016-10-13
433 Extracellular peptidases in subsurface sediments of the White Oak River estuary, NC, suggest microbial community adaptation to oxidize degraded organic matter
Steen, A. D.; Kevorkian, R. T.; Bird, J. T.; Dombrowski, N.; Baker, B. J.; Hagen, S. M.; Mulligan, K. H.; Schmidt, J. M.; Webber, A. T.; Alperin, M. J.
10.1101/080671 — ecology — Posted on 2016-10-13
435 Assessing sampling sufficiency of network metrics using bootstrap
Casas, G.; Bastazini, V. A. G.; Debastiani, V. J.; Pillar, V. D. P.
10.1101/080655 — ecology — Posted on 2016-10-13
440 The genome of the crustacean Parhyale hawaiensis: a model for animal development, regeneration, immunity and lignocellulose digestion
Kao, D.; Lai, A. G.; Stamataki, E.; Rosic, S.; Konstantinides, N.; Jarvis, E.; Di Donfrancesco, A.; Pouchkina-Stantcheva, N.; Semon, M.; Grillo, M.; Bruce, H.; Kumar, S.; Siwanowicz, I.; Le, A.; Lemire, A.; Eisen, M.; Extavour, C.; Browne, W.; Wolff, C.; Averof, M.; Patel, N. H.; Sarkies, P.; Pavlopoulos, A.; Aboobaker, A.
10.1101/065789 — genomics — Posted on 2016-10-13
441 Educational attainment and personality are genetically intertwined
Mottus, R.; Realo, A.; Vainik, U.; Allik, J.; Esko, T.
10.1101/078014 — genetics — Posted on 2016-10-13
445 Analysis of noise mechanisms in cell size control
Saurabh Kartik Modi;Cesar Augusto Vargas-Garcia;Khem Raj Ghusinga;Abhyudai Singh;
10.1101/080465 — Systems Biology — Posted on 2016-10-12
449 Temporal and spatial localization of prediction-error signals in the visual brain
Patrick Johnston;Jonathan Robinson;Athanasios Kokkinakis;Samuel Ridgeway;Michael Simpson;Sam Johnson;Andrew W Young;
10.1101/079848 — Neuroscience — Posted on 2016-10-12
453 Human anterolateral entorhinal cortex volumes are associated with preclinical cognitive decline
Rosanna K Olsen;Lok-Kin Yeung;Alix Noly-Gandon;Maria C D'Angelo;Arber Kacollja;Victoria Smith;Jennifer D Ryan;Morgan D Barense;
10.1101/080374 — Neuroscience — Posted on 2016-10-12
454 Inferring exemplar discriminability in brain representations
Hamed Nili;Alexander Walther;Arjen Alink;Nikolaus Kriegeskorte;
10.1101/080580 — Neuroscience — Posted on 2016-10-12
456 A bacterial chaperone is required for plastid function in malaria parasites
Anat Florentin;David W Cobb;Jillian D Fishburn;Paul S Kim;Manuel A Fierro;Vasant Muralidharan;
10.1101/080408 — Microbiology — Posted on 2016-10-12
459 A roadmap for a quantitative ecosystem-based environmental impact assessment
Jennifer Coston-Guarini;Jean-Marc Guarini;Jody Edmunds;Shawn Hinz;Jeff Wilson;Laurent Chauvaud;
10.1101/080242 — Ecology — Posted on 2016-10-12
460 iCARE: An R Package to Build and Apply Absolute Risk Models
Paige Maas;William Wheeler;Mark Brook;David Check;Montserrat Garcia-Closas;Nilanjan Chatterjee;
10.1101/079954 — Bioinformatics — Posted on 2016-10-12
461 Microtubule stabilization drives centrosome migration to initiate primary ciliogenesis
Amandine Pitaval;Fabrice Senger;Gaelle Letort;Xavier Gidrol;James Sillibourne;Manuel THERY;
10.1101/080556 — Cell Biology — Posted on 2016-10-12
462 Single Cell Phenotyping Reveals Heterogeneity among Haematopoietic Stem Cells Following Infection
Adam L MacLean;Maia A Smith;Juliane Liepe;Aaron Sim;Reema Khorshed;Nico Scherf;Axel Krinner;Ingo Roeder;Cristina Lo Celso;Michael PH Stumpf;
10.1101/080416 — Systems Biology — Posted on 2016-10-12
463 Association of polygenic risk for major psychiatric illness with subcortical volumes and white matter integrity in UK Biobank
Lianne M Reus;Xueyi Shen;Jude Gibson;Ella Wigmore;Lannie Ligthart;Mark J Adams;Gail Davies;Simon R Cox;Saskia P Hagenaars;Mark E Bastin;Ian J Deary;Heather C Whalley;Andrew M McIntosh;
10.1101/080283 — Neuroscience — Posted on 2016-10-12
465 Lysine as a potential low molecular weight angiogen: its clinical, experimental and in-silico validation- A brief study
Debatosh Datta;Priyanshu Verma;Anindita Banerjee;Sujoy Kar;Tanima Sengupta;Nalinava Sengupta;Sujoy Kumar Samanta;Enam Murshed Khan;
10.1101/080176 — Molecular Biology — Posted on 2016-10-12
466 In vivo bioluminescent imaging reveals temporal and spatial dynamics of giardiasis
Nanelle Barash;Christopher Nosala;Jonathan K Pham;Shane G McInally;Stephane Gourguechon;Brendan McCarthy-Sinclair;Scott C Dawson;
10.1101/080226 — Microbiology — Posted on 2016-10-12
467 Identification of genetic variants affecting vitamin D receptor binding and associations with autoimmune disease
Giuseppe Gallone;Wilfried Haerty;Giulio Disanto;Sreeram Ramagopalan;Chris P Ponting;Antonio J Berlanga-Taylor;
10.1101/080143 — Genomics — Posted on 2016-10-12
471 Contrasting patterns of genome-level diversity across distinct co-occurring bacterial populations
Sarahi L Garcia;Sarah L. R Stevens;Benjamin Crary;Manuel Martinez-Garcia;Ramunas Stepanauskas;Tanja Woyke;Susannah G Tringe;Siv Andersson;Stefan Bertilsson;Rex R Malmstrom;Katherine D McMahon;
10.1101/080168 — Evolutionary Biology — Posted on 2016-10-12
473 Temperature drives plant and soil microbial diversity patterns across an elevation gradient from the Andes to the Amazon
Andrew Nottingham;Noah Fierer;Benjamin Turner;Jeanette Whitaker;Nick Ostle;Niall McNamara;Richard Bardgett;Jonathan Leff;Norma Salinas;Adan Ccahuana;Miles Silman;Patrick Meir;
10.1101/079996 — Ecology — Posted on 2016-10-12
475 De novo assembly of viral quasispecies using overlap graphs
Jasmijn Baaijens;Amal Zine El Aabidine;Eric Rivals;Alexander Schoenhuth;
10.1101/080341 — Bioinformatics — Posted on 2016-10-12
477 Origins and Global Context of Brucella abortus in Italy
Giuliano Garofolo;Elisabetta Di Giannatale;Ilenia Platone;Katiuscia Zilli;Lorena Sacchini;Anna Abbas;Massimo Ancora;Cesare Camma;Guido Di Donato;Fabrizio De Massis;Paolo Calistri;Kevin Drees;Jeffrey Foster;
10.1101/077529 — Microbiology — Posted on 2016-10-11
479 Recall without Hippocampal Engagement
David Ross;Patrick Sadil;Merika Wilson;Rosemary Cowell;
10.1101/080309 — Neuroscience — Posted on 2016-10-11
480 Using Machine Learning to Parse Breast Pathology Reports
Adam Yala;Regina Barzilay;Laura Salama;Molly Griffin;Grace Sollender;Aditya Bardia;Constance Lehman;Julliette M Buckley;Suzanne B Coopey;Fernanda Polubriaginof;Judy E Garber;Barbara L Smith;Michele A Gadd;Michelle C Specht;Thomas M Gudewicz;Anthony Guidi;Alphonse Taghian;Kevin S Hughes;
10.1101/079913 — Pathology — Posted on 2016-10-10
481 Systematic variability enhances the reproducibility of an ecological study
Alexandru Milcu;Ruben Puga-Freitas;Aaron M Ellison;Manuel Blouin;Stefan Scheu;Thomas Girin;Gregoire Frechet;Laura Rose;Michael Scherer-Lorenzen;Sebastien Barot;Jean-Christophe Lata;Simone Cesarz;Nico Eisenhauer;Agnes Gigon;Alexandra Weigelt;Amandine Hansart;Anna Greiner;Anne Pando;Arthur Gessler;Carlo Grignani;Davide Assandri;Gerd Gleixner;Jean-Francois Le Galliard;Katherine Urban-Mead;Laura Zavattaro;Marina E.H. Muller;Markus Lange;Martin Lukac;Michael Bonkowski;Neringa Mannerheim;Nina Buchnann;Olaf Butenschoen;Paula Rotter;Rahme Seyhun;Sebastien Devidal;Zachary Kayler;Jacques Roy;
10.1101/080119 — Ecology — Posted on 2016-10-10
483 Multiplexed computations in retinal ganglion cells of a single type
Stephane Deny;Ulisse Ferrari;Emilie Mace;Pierre Yger;Romain Caplette;Serge Picaud;Gasper Tkacik;Olivier Marre;
10.1101/080135 — Neuroscience — Posted on 2016-10-10
484 Genomic plasticity and rapid host switching promote the evolution of generalism in the zoonotic pathogen Campylobacter
Dan J Woodcock;Peter Krusche;Norval JC Strachan;Ken J Forbes;Frederick M Cohan;Guillaume Meric;Samuel K Sheppard;
10.1101/080077 — Microbiology — Posted on 2016-10-10
488 RNAModR: Functional analysis of mRNA modifications in R
Maurits Evers;Andrew Shafik;Ulrike Schumann;Thomas Preiss;
10.1101/080051 — Bioinformatics — Posted on 2016-10-10
492 Programming mRNA decay to modulate synthetic circuit resource allocation
Ophelia S Venturelli;Mika Tei;Stefan Bauer;Leanne Jade G. Chan;Christopher J Petzold;Adam P Arkin;
10.1101/079939 — Synthetic Biology — Posted on 2016-10-09
493 Of cats and men: the paleogenetic history of the dispersal of cats in the ancient world
Claudio Ottoni;Wim van Neer;Bea De Cupere;Julien Daligault;Silvia Guimaraes;Joris Peters;Nikolai Spassov;Mary E. Pendergast;Nicole Boivin;Arturo Morales-Muniz;Adrian Balasescu;Cornelia Becker;Norbert Benecke;Adina Boronenant;Hijlke Buitenhuis;Jwana Chahoud;Alison Crowther;Laura Llorente;Nina Manaseryan;Herve Monchot;Vedat Onar;Marta Osypinska;Olivier Putelat;Jacqueline Studer;Ursula Wierer;Ronny Decorte;Thierry Grange;Eva-Maria Geigl;
10.1101/080028 — Genetics — Posted on 2016-10-09
494 2b or not 2b: Experimental evolution of functional exogenous sequences in a plant RNA virus
Anouk Willemsen;Mark Peter Zwart;Silvia Ambrós;José Luis Carrasco;Santiago F. Elena;
10.1101/079970 — Evolutionary Biology — Posted on 2016-10-09
496 The Chd1 chromatin remodeler shifts hexasomes unidirectionally
Robert F Levendosky;Anton Sabantsev;Sebastian Deindl;Gregory D Bowman;
10.1101/080010 — Biochemistry — Posted on 2016-10-09
497 Frequency of mosaicism points towards mutation-prone early cleavage cell divisions.
Chad Harland;Carole Charlier;Latifa Karim;Nadine Cambisano;Manon Deckers;Erik Mullaart;Wouter Coppieters;Michel Georges;
10.1101/079863 — Genetics — Posted on 2016-10-09
500 Comparative transcriptome analysis by deep RNA sequencing at early stage of skin pigmentation in goats (Capra hircus)
Hangxing Ren;Gaofu Wang;Jing Jiang;Liangjia Liu;Nianfu Li;Jie Li;Lin Fu;Haiyan Zhang;Risu Na;Yongfu Huang;Li Zhang;Lei Chen;Yong Huang;Peng Zhou;
10.1101/079871 — Developmental Biology — Posted on 2016-10-09
501 GW-CALL: Accurate Genome-Wide Variant Caller
Maryam Ghareghani;Seyed Abolfazl Motahari;Shahram Khazaei;Mostafa Tavassolipour;
10.1101/079905 — Bioinformatics — Posted on 2016-10-09
502 Collider Scope: How selection bias can induce spurious associations
Marcus R Munafo;Kate Tilling;Amy E Taylor;David M Evans;George Davey Smith;
10.1101/079707 — Epidemiology — Posted on 2016-10-07
503 A Novel function for Cactus/IκB inhibitor to promote Toll signals in the Drosophila embryo
Maira A Cardoso;Marcio R Fontenele;Bomyi Lim;Paulo M Bisch;Stanislav Shvartsman;Helena M Araujo;
10.1101/079814 — Developmental Biology — Posted on 2016-10-07
506 Alzheimer’s disease pathogenesis is dependent on neuronal receptor PTPσ
Yuanzheng Gu;Yaoling Shu;Angela Corona;Kui Xu;Allen F Yi;Shannon Chen;Man Luo;Michel Tremblay;Gary E Landreth;Randy Nelson;Jerry Silver;Yingjie Shen;
10.1101/079806 — Neuroscience — Posted on 2016-10-09
507 Alzheimer’s disease pathogenesis is dependent on neuronal receptor PTPσ
Yuanzheng Gu;Yaoling Shu;Angela Corona;Kui Xu;Allen F Yi;Shannon Chen;Man Luo;Michel Tremblay;Gary E Landreth;Randy Nelson;Jerry Silver;Yingjie Shen;
10.1101/079806 — Neuroscience — Posted on 2016-10-07
509 QTL-guided metabolic engineering of a complex trait
Matthew J Maurer;Lawrence Sutardja;Dominic Pinel;Stefan Bauer;Amanda L Muehlbauer;Tyler D Ames;Jeffrey M Skerker;Adam P Arkin;
10.1101/079764 — Bioengineering — Posted on 2016-10-07
513 Atmospheric deposition exposes pandas to toxic pollutants
Yi-ping Chen;Ying-juan Zheng;Qiang Liu;Yi Song;Zhi-sheng An;Qing-yi Ma;Aaron Ellison;
10.1101/079632 — Ecology — Posted on 2016-10-07
514 Hosts, parasites, and their interactions respond to different climatic variables
Timothee Poisot;Cynthia Gueveneux-Julien;Marie-Josee Fortin;Dominique Gravel;Pierre Legendre;
10.1101/079780 — Ecology — Posted on 2016-10-07
515 Chiral vortex dynamics on membranes is an intrinsic property of FtsZ, driven by GTP hydrolysis
Diego Ramirez;Daniela A. Garcia-Soriano;Ana Raso;Mario Feingold;German Rivas;Petra Schwille;
10.1101/079533 — — Posted on 2016-10-07
516 TatA complexes exhibit a marked change in organisation in response to expression of the TatBC complex
Sarah Marie Smith;Andrew Yarwood;Roland Andrew Fleck;Colin Robinson;Corinne J Smith;
10.1101/079715 — Biophysics — Posted on 2016-10-07
517 Accurate contact predictions for thousands of protein families using PconsC3
Marcin J Skwark;Mirco Michel;David Menendez Hurtado;Magnus Ekeberg;Arne Elofsson;
10.1101/079673 — Bioinformatics — Posted on 2016-10-07
519 Behavior of Caenorhabditis elegans in a nicotine gradient modulated by food
Robert Sobkowiak;Piotr Kaczmarek;Mateusz Kowalski;Rafał Kabaciński;Andrzej Lesicki;
10.1101/079699 — Animal Behavior and Cognition — Posted on 2016-10-07
520 Genome-Wide Association Study of Ionomics Traits on Diverse Soybean Populations from Germplasm Collections
Gregory Ziegler;Randall Nelson;Stephanie Granada;Hari B Krishnan;Jason D Gillman;Ivan Baxter;
10.1101/079731 — Genetics — Posted on 2016-10-07
521 PoGo: Jumping from Peptides to Genomic Loci
Christoph N. Schlaffner;Georg Pirklbauer;Andreas Bender;Jyoti S. Choudhary;
10.1101/079772 — Bioinformatics — Posted on 2016-10-07
526 An efficient field and laboratory workflow for plant phylotranscriptomic projects
Ya Yang;Michael Moore;Samuel Brockington;Alfonso Timoneda-Monfort;Tao Feng;Hannah Marx;Joseph Walker;Stephen Smith;
10.1101/079582 — Evolutionary Biology — Posted on 2016-10-07
529 Automatic Head Tracking of The Common Marmoset.
Hjalmar K Turesson;Thamiris Botelho Ribeiro Conceicao;Sidarta Ribeiro;
10.1101/079566 — Animal Behavior and Cognition — Posted on 2016-10-07
531 Assessing Pathogens for Natural versus Laboratory Origins Using Genomic Data and Machine Learning
Tonia Korves;Christopher D Garay;Heather A Carleton;Ashley Sabol;Eija Trees;Matthew W Peterson;
10.1101/079541 — Bioinformatics — Posted on 2016-10-06
532 Representations of Subjective Effort Cost
Patrick S Hogan;Cary D Frydman;Joseph K Galaro;Vikram S Chib;
10.1101/079467 — Neuroscience — Posted on 2016-10-06
534 Two novel genes discovered in human mitochondrial DNA using PacBio full-length transcriptome data
Gao Shan;Xiaoxuan Tian;Yu Sun;Zhenfeng Wu;Zhi Cheng;Pengzhi Dong;Bingjun He;Jishou Ruan;Wenjun Bu;
10.1101/079517 — Genomics — Posted on 2016-10-06
536 SCORPIUS improves trajectory inference and identifies novel modules in dendritic cell development
Robrecht Cannoodt;Wouter Saelens;Dorine Sichien;Simon Tavernier;Sophie Janssens;Martin Guilliams;Bart N Lambrecht;Katleen De Preter;Yvan Saeys;
10.1101/079509 — Bioinformatics — Posted on 2016-10-07
537 SCORPIUS improves trajectory inference and identifies novel modules in dendritic cell development
Robrecht Cannoodt;Wouter Saelens;Dorine Sichien;Simon Tavernier;Sophie Janssens;Martin Guilliams;Bart N Lambrecht;Katleen De Preter;Yvan Saeys;
10.1101/079509 — Bioinformatics — Posted on 2016-10-06
538 Portable and Error-Free DNA-Based Data Storage
S. M. Hossein Tabatabaei Yazdi;Ryan Gabrys;Olgica Milenkovic;
10.1101/079442 — Bioinformatics — Posted on 2016-10-07
539 Portable and Error-Free DNA-Based Data Storage
S. M. Hossein Tabatabaei Yazdi;Ryan Gabrys;Olgica Milenkovic;
10.1101/079442 — Bioinformatics — Posted on 2016-10-05
540 Reproducibility and replicability of rodent phenotyping in preclinical studies
Neri Kafkafi;Joseph Agassi;Elissa J Chesler;John C Crabbe;Wim E Crusio;David Eilam;Robert Gerlai;Ilan Golani;Alex Gomez-Marin;Ruth Heller;Fuad Iraqi;Iman Jaljuli;Natasha A Karp;Hugh Morgan;George Nicholson;Donald W Pfaff;Helene S Richter;Philip B Stark;Oliver Stiedl;Victoria Stodden;Lisa M Tarantino;Valter Tucci;William Valdar;Robert W Williams;Hanno Wurbel;Yoav Benjamini;
10.1101/079350 — Scientific Communication and Education — Posted on 2016-10-05
542 Incorporating calibrated functional assay data into the BRCA1 Ex-UV database
Bryony A Thompson;Russell Bell;Bryan E Welm;John Burn;Sean Tavtigian;
10.1101/079418 — Genetics — Posted on 2016-10-05
552 Size-Dependent Accumulation of the Mitotic Activator Cdc25 as a Mechanism of Size Control in Fission Yeast
Daniel Keifenheim;Xi-Ming Sun;Edridge D'Souza;Makoto Ohira;Mira Magner;Michael Mayhew;Samuel Marguerat;Nicholas Rhind;
10.1101/078592 — Cell Biology — Posted on 2016-10-11
553 Size-Dependent Accumulation of the Mitotic Activator Cdc25 as a Mechanism of Size Control in Fission Yeast
Daniel Keifenheim;Xi-Ming Sun;Edridge D'Souza;Makoto Ohira;Mira Magner;Michael Mayhew;Samuel Marguerat;Nicholas Rhind;
10.1101/078592 — Cell Biology — Posted on 2016-10-05
554 Development of a modular automated system for maintenance and differentiation of adherent human pluripotent stem cells.
Duncan E Crombie;Maciej Daniszewski;Helena H Liang;Tejal Kulkarni;Fan Li;Grace E Lidgerwood;Alison Conquest;Damian Hernandez;Sandy S Hung;Katherine P Gill;Elisabeth De Smit;Lisa S Kearns;Linda Clarke;Valentin M Sluch;Xitiz Chamling;Donald J Zack;Raymond CB Wong;Alex Hewitt;Alice Pebay;
10.1101/079335 — Bioengineering — Posted on 2016-10-05
555 Predicting off-target effects for end-to-end CRISPR guide design
Jennifer Listgarten;Michael Weinstein;Melih Elibol;Luong Hoang;John Doench;Nicolo Fusi;
10.1101/078253 — Bioinformatics — Posted on 2016-10-05
556 BIDS Apps: Improving ease of use, accessibility and reproducibility of neuroimaging data analysis methods
Krzysztof J. Gorgolewski;Fidel Alfaro-Almagro;Tibor Auer;Pierre Bellec;Mihai Capota;Mallar Chakravarty;Nathan W. Churchill;R. Cameron Craddock;Gabriel Devenyi;Anders Eklund;Oscar Esteban;Guillaume Flandin;Satrajit Ghosh;J. Swaroop Guntupalli;Mark Jenkinson;Anisha Keshavan;Gregory Kiar;Pradeep Reddy Raamana;David Raffelt;Christopher J. Steele;Pierre-Olivier Quirion;Robert E. Smith;Stephen Strother;Gael Varoquaux;Tal Yarkoni;Yida Wang;Russell Poldrack;
10.1101/079145 — Neuroscience — Posted on 2016-10-05
557 BIDS Apps: Improving ease of use, accessibility and reproducibility of neuroimaging data analysis methods
Krzysztof J. Gorgolewski;Fidel Alfaro-Almagro;Tibor Auer;Pierre Bellec;Mihai Capota;Mallar Chakravarty;Nathan W. Churchill;R. Cameron Craddock;Gabriel Devenyi;Anders Eklund;Oscar Esteban;Guillaume Flandin;Satrajit Ghosh;J. Swaroop Guntupalli;Mark Jenkinson;Anisha Keshavan;Gregory Kiar;Pradeep Reddy Raamana;David Raffelt;Christopher J. Steele;Pierre-Olivier Quirion;Robert E. Smith;Stephen Strother;Gael Varoquaux;Tal Yarkoni;Yida Wang;Russell Poldrack;
10.1101/079145 — Neuroscience — Posted on 2016-10-04
559 Recovery of hand function after stroke: separable systems for finger strength and control
Jing Xu;Naveed Ejaz;Benjamin Hertler;Meret Branscheidt;Mario Widmer;Andreia V Faria;Michelle Harran;Juan C Cortes;Nathan Kim;Pablo A Celnik;Tomoko Kitago;Andreas Luft;John W Krakauer;Jörn Diedrichsen;
10.1101/079269 — Neuroscience — Posted on 2016-10-07
560 Recovery of hand function after stroke: separable systems for finger strength and control
Jing Xu;Naveed Ejaz;Benjamin Hertler;Meret Branscheidt;Mario Widmer;Andreia V Faria;Michelle Harran;Juan C Cortes;Nathan Kim;Pablo A Celnik;Tomoko Kitago;Andreas Luft;John W Krakauer;Jörn Diedrichsen;
10.1101/079269 — Neuroscience — Posted on 2016-10-05
561 Recovery of hand function after stroke: separable systems for finger strength and control
Jing Xu;Naveed Ejaz;Benjamin Hertler;Meret Branscheidt;Mario Widmer;Andreia V Faria;Michelle Harran;Juan C Cortes;Nathan Kim;Pablo A Celnik;Tomoko Kitago;Andreas Luft;John W Krakauer;Jörn Diedrichsen;
10.1101/079269 — Neuroscience — Posted on 2016-10-04
567 Evidence of cryptic incidence in childhood diseases
Christian E Gunning;Matthew J Ferrari;Erik B Erhardt;Helen J Wearing;
10.1101/079194 — Ecology — Posted on 2016-10-04
568 A molecular portrait of microsatellite instability across multiple cancers
Isidro Cortes-Ciriano;Sejoon Lee;Woong-Yang Park;Tae-Min Kim;Peter Park;
10.1101/079152 — Cancer Biology — Posted on 2016-10-04
570 Engineering species-like barriers to sexual reproduction
Maciej Maselko;Stephen C. Heinsch;Jeremy Chacôn;William Harcombe;Michael J. Smanski;
10.1101/079095 — Synthetic Biology — Posted on 2016-10-04
571 Engineering species-like barriers to sexual reproduction
Maciej Maselko;Stephen C. Heinsch;Jeremy Chacôn;William Harcombe;Michael J. Smanski;
10.1101/079095 — Synthetic Biology — Posted on 2016-10-04
572 Morphological plant modeling: Unleashing geometric and topologic potential within the plant sciences
Alexander Bucksch;Acheampong Atta-Boateng;Akomian Fortune Azihou;Mathilde Balduzzi;Dorjsuren Battogtokh;Aly Baumgartner;Brad Binder;Siobhan Braybrook;Cynthia Chang;Viktoriya Coneva;Thomas DeWitt;Alexander Fletcher;Malia Gehan;Diego Hernan Diaz Martinez;Lilan Hong;Anjali Iyer-Pascuzzi;Laura Klein;Samuel Leiboff;Mao Li;Jonathan Lynch;Alexis Maizel;Julin Maloof;RJ Cody Markelz;Ciera Martinez;Laura Miller;Washington Mio;Wojtek Palubicki;Hendrik Poorter;Christophe Pradal;Charles Price;Eetu Puttonen;John Reese;Ruben Rellan-Alvarez;Edgar Spalding;Erin Sparks;Chris Topp;Joseph Williams;Daniel Chitwood
10.1101/078832 — Plant Biology — Posted on 2016-10-04
573 Sequencing of small RNAs of the fern Pleopeltis minima (Polypodiaceae) offers insight into the evolution of the microRNA repertoire in land plants
Florencia Berruezo;Flavio S J de Souza;Pablo I Picca;Sergio I Nemirovsky;Leandro Martinez-Tosar;Mercedes Rivero;Alejandro N Mentaberry;Alicia M Zelada;
10.1101/078907 — Plant Biology — Posted on 2016-10-04
576 Adaptive Somatic Mutations Calls with Deep Learning and Semi-Simulated Data
Remi Torracinta;Laurent Mesnard;Susan Levine;Rita Shaknovich;Maureen Hanson;Fabien Campagne;
10.1101/079087 — Bioinformatics — Posted on 2016-10-04
579 The Healthy Brain Network Serial Scanning Initiative: A resource for evaluating inter-individual differences and their reliabilities across scan conditions and sessions.
David O'Connor;Natan Vega Potler;Meagan Kovacs;Ting Xu;Lei Ai;John Pellman;Tamara Vanderwal;Lucas Parra;Samantha Cohen;Satrajit Ghosh;Jasmine Escalera;Natalie Grant-Villegas;Yael Osman;Anastasia Bui;Richard Cameron Craddock;Michael Peter Milham;
10.1101/078881 — Neuroscience — Posted on 2016-10-03
582 Monkey in the middle: monkeys serve as amplification hosts but not reservoir hosts of sylvatic chikungunya virus
Benjamin M Althouse;Matilde Guerbois;Derek AT Cummings;Ousmane Diop;Ousmane Faye;Abdourahmane Faye;Diawo Diallo;Bakary Djilocalisse Sadio;Abdourahmane Sow;Oumar Faye;Amadou A Sall;Mawlouth Diallo;Brenda Benefit;Evan Simmons;Douglas M Watts;Scott C Weaver;Kathryn A Hanley;
10.1101/079046 — Ecology — Posted on 2016-10-03
586 System-wide automatic extraction of functional signatures in Pseudomonas aeruginosa with eADAGE
Jie Tan;Georgia Doing;Kimberley A Lewis;Courtney E Price;Kathleen M Chen;Kyle C Cady;Barret Perchuk;Michael T Laub;Deborah A Hogan;Casey S Greene;
10.1101/078659 — Systems Biology — Posted on 2016-10-03
587 I TRIED A BUNCH OF THINGS: THE DANGERS OF UNEXPECTED OVERFITTING IN CLASSIFICATION
Michael Skocik;John Collins;Chloe Callahan-Flintoft;Howard Bowman;Brad Wyble;
10.1101/078816 — Neuroscience — Posted on 2016-10-03
588 Rapid molecular detection of Zika virus in urine using the recombinase polymerase amplification assay
Ahmed Abd El Wahed;Sabri S. Sanabani;Oumar Faye;Rodrigo Pessoa;Joao-Veras Patriota;Ricardo Rodrigues-Giorgi;Pranav Patel;Susanne Boehlken-Fascher;Olfert Landt;Matthias Niedrig;Paolo M. de A. Zanotto;Claus-Peter Czerny;Amadou A. Sall;Manfred Weidmann;
10.1101/078501 — Microbiology — Posted on 2016-10-03
589 Combining Multiscale Diffusion Kernels for Learning the Structural and Functional Brain Connectivity
Sriniwas Govinda Surampudi;Shruti Naik;Avinash Shrama;Raju Surampudi Bapi;Dipanjan Roy;
10.1101/078766 — Neuroscience — Posted on 2016-10-02
590 Targeted electrical stimulation of active brain sources using reciprocity
Jacek P Dmochowski;Laurent Koessler;Lucas C Parra;Marom Bikson;Anthony M Norcia;
10.1101/078758 — Neuroscience — Posted on 2016-10-02
591 Encoding of locomotion kinematics in the mouse cerebellum
Tomaso Muzzu;Susanna Mitolo;Giuseppe Gava;Simon Schultz;
10.1101/078873 — Neuroscience — Posted on 2016-10-05
592 Encoding of locomotion kinematics in the mouse cerebellum
Tomaso Muzzu;Susanna Mitolo;Giuseppe Gava;Simon Schultz;
10.1101/078873 — Neuroscience — Posted on 2016-10-02
593 Brain activity and connectivity attributable to nociceptive signal block
Michael L Meier;Sonja Widmayer;Nuno M.P. Matos;Jetmir Abazi;Dominik A Ettlin;
10.1101/078857 — Neuroscience — Posted on 2016-10-03
594 Brain activity and connectivity attributable to nociceptive signal block
Michael L Meier;Sonja Widmayer;Nuno M.P. Matos;Jetmir Abazi;Dominik A Ettlin;
10.1101/078857 — Neuroscience — Posted on 2016-10-02
595 Systematic tissue-specific functional annotation of the human genome highlights immune-related DNA elements for late-onset Alzheimer’s disease
Qiongshi Lu;Ryan L Powles;Sarah Abdallah;Derek Ou;Qian Wang;Yiming Hu;Yisi Lu;Wei Liu;Shubhabrata Mukherjee;Paul K Crane;Hongyu Zhao;
10.1101/078865 — Genetics — Posted on 2016-10-02
596 Unbiased K-mer Analysis Reveals Changes in Copy Number of Highly Repetitive Sequences During Maize Domestication and Improvement
Sanzhen Liu;Jun Zheng;Pierre Migeon;Jie Ren;Ying Hu;Cheng He;Hongjun Liu;Junjie Fu;Frank F White;Christopher Toomajian;Guoying Wang;
10.1101/078790 — Genomics — Posted on 2016-10-02
597 Co-expression networks reveal the tissue-specific regulation of transcription and splicing
Ashis Saha;Yungil Kim;Ariel D. H. Gewirtz;Brian Jo;Chuan Gao;Ian C McDowell;GTEx Consortium;Barbara E Engelhardt;Alexis Battle;
10.1101/078741 — Genomics — Posted on 2016-10-02
598 Fine mapping of Ur-3, a historically important rust resistance locus in common bean
Oscar P. Hurtado-Gonzales;Giseli Valentini;Thiago A. S. Gilio;Alexandre M. Martins;Qijian Song;Marcial A. Pastor-Corrales;
10.1101/078782 — Genetics — Posted on 2016-10-02
600 Oligodendrocytes in the mouse optic nerve originate in the preoptic area
Katsuhiko Ono;Kengo Yoshii;Hiroyuki Tominaga;Hitoshi Gotoh;Tadashi Nomura;Hirohide Takebayashi;Kazuhiro Ikenaka;
10.1101/078774 — Neuroscience — Posted on 2016-10-01
601 Multiplex gene editing by CRISPR-Cpf1 through autonomous processing of a single crRNA array
Bernd Zetsche;Matthias Heidenreich;Prarthana Mohanraju;Iana Fedorova;Jeroen Kneppers;Ellen M DeGennaro;Nerges Winblad;Sourav R Choudhury;Omar O Abudayyeh;Jonathan S Gootenberg;Wen Y Wu;David A Scott;Konstantin Severinov;John van der Oost;Feng Zhang;
10.1101/049122 — Molecular Biology — Posted on 2016-10-01
608 A shotgun approach to identify mechanical nociception genes.
Melissa G Christianson;Stephanie E. Mauthner;Dan Tracey;
10.1101/077644 — Neuroscience — Posted on 2016-10-03
613 The Identification of a 1916 Irish Rebel: New Approach for Estimating Relatedness From Low Coverage Homozygous Genomes
Daniel M Fernandes;Kendra Sirak;Mario Novak;John Finarelli;John Byrne;Edward Connolly;Jeanette Carlsson;Edmondo Ferretti;Ron Pinhasi;Jens Carlsson;
10.1101/076992 — Bioinformatics — Posted on 2016-10-08
614 Pre-metazoan origin of animal miRNAs
Jon Brate;Ralf Stefan Neumann;Bastian Fromm;Arthur Alexander Blorstad Haraldsen;Paul Grini;Kamran Shalchian-Tabrizi;
10.1101/076190 — Evolutionary Biology — Posted on 2016-10-01
616 kWIP: The k-mer Weighted Inner Product, a de novo Estimator of Genetic Similarity
Kevin D Murray;Christfried Webers;Cheng Soon Ong;Justin O Borevitz;Norman Warthmann;
10.1101/075481 — Bioinformatics — Posted on 2016-10-04
618 Joint analysis of area and thickness of the cerebral cortex replaces cortical volume measurements
Anderson M. Winkler;Douglas N. Greve;Knut J. Bjuland;Thomas E. Nichols;Mert R. Sabuncu;Asta K. Haberg;Jon Skranes;Lars M. Rimol;
10.1101/074666 — Neuroscience — Posted on 2016-10-05
625 Predicting functional neuroanatomical maps from fusing brain networks with genetic information
Florian Ganglberger;Joanna Kaczanowska;Josef M. Penninger;Andreas Hess;Katja Buehler;Wulf Haubensak;
10.1101/070037 — Neuroscience — Posted on 2016-10-11
626 GTSE1 tunes microtubule stability for chromosome alignment and segregation through MCAK inhibition
Shweta Bendre;Arnaud Rondelet;Conrad Hall;Nadine Schmidt;Yu-Chih Lin;Gary Brouhard;Alexander Bird;
10.1101/067827 — Cell Biology — Posted on 2016-10-12
627 Self-Organizing Global Gene Expression Regulated Through Criticality: Mechanism of the Cell-Fate Change
Masa Tsuchiya;Alessandro Giuliani;Midori Hashimoto;Jekaterina Erenpreisa;Kenichi Yoshikawa;
10.1101/066498 — Genomics — Posted on 2016-10-13
628 The genome of the crustacean Parhyale hawaiensis: a model for animal development, regeneration, immunity and lignocellulose digestion
Damian Kao;Alvina G Lai;Evangelia Stamataki;Silvana Rosic;Nikolaos Konstantinides;Erin Jarvis;Alessia Di Donfrancesco;Natalia Pouchkina-Stantcheva;Marie Semon;Marco Grillo;Heather Bruce;Suyash Kumar;Igor Siwanowicz;Andy Le;Andrew Lemire;Michael Eisen;Cassandra Extavour;William Browne;Carsten Wolff;Michalis Averof;Nipam H Patel;Peter Sarkies;Anastasios Pavlopoulos;Aziz Aboobaker;
10.1101/065789 — Genomics — Posted on 2016-10-13
629 Enhanced representation of space by prefrontal neuronal ensembles and its dependence on cognitive states
Mohammad-Reza Dehaqani;Abdol-Hossein Vahabie;Mohammadbagher Parsa;Behrad Noudoost;Alireza Soltani;
10.1101/065581 — Neuroscience — Posted on 2016-10-10
632 KAT: A K-mer Analysis Toolkit to quality control NGS datasets and genome assemblies
Daniel Mapleson;Gonzalo Garcia Accinelli;George Kettleborough;Jonathan Wright;Bernardo J. Clavijo;
10.1101/064733 — Bioinformatics — Posted on 2016-10-07
633 Architectures of a lipid transport systems for the bacterial outer membrane
Damian C Ekiert;Gira Bhabha;Garrett Greenan;Sergey Ovchinnikov;Jeffery S Cox;Ronald D Vale;
10.1101/064360 — Biochemistry — Posted on 2016-10-01
635 Colonization and diversification of aquatic insects on three Macaronesian archipelagos using 59 nuclear loci derived from a draft genome
Sereina Rutschmann;Harald Detering;Sabrina Simon;David H Funk;Jean-Luc Gattolliat;Samantha J Hughes;Pedro M Raposeiro;Rob DeSalle;Michel Sartori;Michael T Monaghan;
10.1101/063859 — Evolutionary Biology — Posted on 2016-10-10
636 Tradict enables accurate prediction of eukaryotic transcriptional states from 100 marker genes
Surojit Biswas;Konstantin Kerner;Paulo Jose Pereira Lima Teixeira;Jeffery L Dangl;Vladimir Jojic;Philip A. Wigge;
10.1101/060111 — Bioinformatics — Posted on 2016-10-11
637 Shedding light on the grey zone of speciation along a continuum of genomic divergence
Camille Roux;Christelle Fraisse;Jonathan Romiguier;Yoann Anciaux;Nicolas Galtier;Nicolas Bierne;
10.1101/059790 — Evolutionary Biology — Posted on 2016-10-05
639 Genomics implicates adaptive and innate immunity in Alzheimer’s and Parkinson’s
Sarah A Gagliano;Jennie G Pouget;John Hardy;Jo Knight;Michael R Barnes;Mina Ryten;Michael E Weale;
10.1101/059519 — Genomics — Posted on 2016-10-12
644 Zika in Rio de Janeiro: Assessment of basic reproduction number and comparison with dengue outbreaks
Leonardo Bastos;Daniel A. M. Villela;Luiz Max Carvalho;Oswaldo G. Cruz;Marcelo F. C. Gomes;Betina Durovni;Maria Cristina Lemos;Valeria Saraceni;Flavio C. Coelho;Claudia T. Codeco;
10.1101/055475 — Scientific Communication and Education — Posted on 2016-10-06
645 The last common ancestor of most bilaterian animals possessed at least 9 opsins
M Desmond Ramirez;Autum N Pairett;M Sabrina Pankey;Jeanne M Serb;Daniel I Speiser;Andrew J Swafford;Todd H. Oakley;
10.1101/052902 — Evolutionary Biology — Posted on 2016-10-05
646 Subcortical source and modulation of the narrowband gamma oscillation in mouse visual cortex
Aman B Saleem;Anthony D Lien;Michael Krumin;Bilal Haider;Miroslav Roman Roson;Asli Ayaz;Kimberley Reinhold;Laura Busse;Matteo Carandini;Kenneth D Harris;
10.1101/050245 — Neuroscience — Posted on 2016-10-04
648 Transient structural variations alter gene expression and quantitative traits in Schizosaccharomyces pombe.
Daniel Charlton Jeffares;Clemency Jolly;Mimoza Hoti;Doug Speed;Charalampos Rallis;Liam Shaw;Francois Balloux;Christophe Dessimoz;Jurg Bahler;Fritz Sedlazeck;
10.1101/047266 — Genomics — Posted on 2016-10-03
650 The thalamus is a gateway for stimulus-evoked activity in the habenula
Ruey Kuang Cheng;Seetha Krishnan;Qian Lin;David G. C. Hildebrand;Isaac H. Bianco;Caroline Kibat;Suresh Jesuthasan;
10.1101/047936 — Neuroscience — Posted on 2016-10-10
653 The CARD-CC/Bcl10/paracaspase signaling complex is functionally conserved since the last common ancestor of planulozoa.
Jens Staal;Yasmine Driege;Alice Borghi;Paco Hulpiau;Laurens Lievens;Ismail Gul;Srividhya Sundararaman;Amanda Goncalves;Ineke Dhondt;Bart Braeckman;Ulrich Technau;Yvan Saeys;Frans Van Roy;Rudi Beyaert;
10.1101/046789 — Evolutionary Biology — Posted on 2016-10-07
654 Integrating tissue specific mechanisms into GWAS summary results
Alvaro Barbeira;Scott P Dickinson;Jason M Torres;Eric S Torstenson;Jiamao Zheng;Heather E Wheeler;Kaanan P Shah;Todd Edwards;GTEx Consortium;Dan Nicolae;Nancy J Cox;Hae Kyung Im;
10.1101/045260 — Bioinformatics — Posted on 2016-10-11
655 Comparative analysis of dengue and Zika outbreaks reveals differences by setting and virus
Sebastian Funk;Adam J. Kucharski;Anton Camacho;Rosalind M. Eggo;Laith Yakob;Lawrence M. Murray;W. John Edmunds;
10.1101/043265 — Ecology — Posted on 2016-10-06
656 Phosphorus acquisition efficiency in arbuscular mycorrhizal maize is correlated with the abundance of root-external hyphae and the accumulation of transcripts encoding PHT1 phosphate transporters
Ruairidh J H Sawers;Simon F Svane;Clement Quan;Mette Gronlund;Barbara Wozniak;Mesfin Nigussie;Matthais Mueller;Eliecer Gonzalez-Munoz;Ricardo Chavez Montes;Ivan Baxter;Jerome Goudet;Iver Jakobsen;Uta Paszkowski;
10.1101/042028 — Plant Biology — Posted on 2016-10-03
658 Optimistic reinforcement learning: computational and neural bases
Germain Lefebvre;Mael Lebreton;Florent Meyniel;Sacha Bourgeois-Gironde;Stefano Palminteri;
10.1101/038778 — Neuroscience — Posted on 2016-10-03
659 Decoupling global biases and local interactions between cell biological variables
Assaf Zaritsky;Uri Obolski;Zhuo Gan;Carlos R Reis;Yi Du;Sandra L Schmid;Gaudenz Danuser;
10.1101/038059 — Cell Biology — Posted on 2016-10-11