bioRxiv directory

de Groot, R.; van Loenen, M. M.; Guislain, A.; van den Heuvel, M. M.; Burger, P.; Spaapen, R. M.; Amsen, D.; Haanen, J. B.; Monkhorst, K.; Hartemink, K. J.; Wolkers, M. C.

10.1101/426221 — immunology — Posted on 2018-09-30

20 Linking YAP to Müller glia quiescence exit in the degenerative retina

Hamon, H.; Ail, D.; Garcia-Garcia, D.; Bitard, J.; Dalkara, D.; Locker, M.; Roger, J.; Perron, M.

10.1101/431254 — developmental biology — Posted on 2018-09-30

21 A molecular mechanism for salt stress-induced microtubule array formation in Arabidopsis

Kesten, C.; Wallmann, A.; Schneider, R.; McFarlane, H. E.; Diehl, A.; Abbas Khan, G.; van Rossum, B.-J.; Lampugnani, E.; Cremer, N.; Schmieder, P.; Ford, K. L.; Seiter, F.; Heazlewood, J. L.; Sanchez-Rodriguez, C.; Oschkinat, H.; Persson, S.

10.1101/431031 — cell biology — Posted on 2018-09-30

22 Extended hopanoid lipids promote bacterial motility, surface attachment, and root nodule development in the Bradyrhizobium diazoefficiens-Aeschynomene afraspera symbiosis

Belin, B. J.; Tookmanian, E. T.; de Anda, J.; Wong, G.; Newman, D. K.

10.1101/423301 — microbiology — Posted on 2018-09-30

23 In silico investigation of coding variants potentially affecting the functioning of the glutamatergic N-methyl-D-aspartate receptor in schizophrenia

Tsavou, A.; Curtis, D.

10.1101/429258 — genetics — Posted on 2018-09-30

24 GenEpi: Gene-based Epistasis Discovery Using Machine Learning

Chang, Y.-C.; Wu, J.-T.; Hong, M.-Y.; Tung, Y.-A.; Hsieh, P.-H.; Yee, S. W.; Giacomini, K. M.; Oyang, Y.-J.; Chen, C.-Y.; Alzheimer's Disease Neuroimaging Initiative,

10.1101/421719 — bioinformatics — Posted on 2018-09-30

25 Vimentin filaments interact with the mitotic cortex allowing normal cell division

Duarte, S.; Viedma-Poyatos, A.; Navarro-Carrasco, E.; Martinez, A. E.; Pajares, M. A.; Perez-Sala, D.

10.1101/356642 — cell biology — Posted on 2018-09-30

26 Transient and sustained control mechanisms supporting novel instructed behavior.

Palenciano, A. F.; Gonzalez-Garcia, C.; Arco, J. E.; Ruz, M.

10.1101/341818 — neuroscience — Posted on 2018-09-30

27 Beyond the SNP threshold: identifying outbreak clusters using inferred transmissions

Stimson, J.; Gardy, J. L.; Mathema, B.; Crudu, V.; Cohen, T.; Colijn, C.

10.1101/319707 — genomics — Posted on 2018-09-30

28 DNA-segment-capture model for loop extrusion by structural maintenance of chromosome (SMC) protein complexes

Marko, J. F.; De Los Rios, P.; Barducci, A.; Gruber, S.

10.1101/325373 — biophysics — Posted on 2018-09-30

29 StPOPA, encoding an anionic peroxidase in Solanum tuberosum, enhances resistance against Phytophthora infestans

Yu, Y.; Rui, J.; Hongyang, W.; Zhendong, T.; Conghua, X.

10.1101/431346 — pathology — Posted on 2018-09-30

30 Assessing connectivity despite high diversity in island populations of the malaria mosquito Anopheles gambiae

Bergey, C. M.; Lukindu, M.; Wiltshire, R. M.; Fontaine, M. C.; Kayondo, J. K.; Besansky, N. J.

10.1101/430702 — evolutionary biology — Posted on 2018-09-30

31 Single-cell microRNA/mRNA co-sequencing reveals non-genetic heterogeneity and novel regulatory mechanisms

Wang, N.; Zheng, J.; Chen, Z.; Liu, Y.; Dura, B.; Kwak, M.; Xavier-Ferrucio, J.; Lu, Y.-C.; Zhang, M.; Roden, C.; Cheng, J.; Krauss, D.; Ding, Y.; Fan, R.; Lu, J.

10.1101/431213 — systems biology — Posted on 2018-09-30

32 MicroRNA-223 protects neurons from degeneration in Experimental Autoimmune Encephalomyelitis

Morquette, B.; Juzwik, C. A.; Drake, S. S.; Charabati, M.; Zhang, J.; Lecuyer, M.-A.; Galloway, D.; Dumas, A.; de Faria Junior, O.; Bueno, M.; Rambaldi, I.; Moore, C.; Bar-Or, A.; Vallieres, L.; Prat, A.; Fournier, A.

10.1101/430777 — neuroscience — Posted on 2018-09-30

33 Evolution of a novel chimeric maltotriose transporter in Saccharomyces eubayanus from parent proteins unable to perform this function

Baker, E. P.; Hittinger, C. T.

10.1101/431171 — genetics — Posted on 2018-09-30

34 Preventing S. aureus biofilm formation on titanium surfaces by the release of antimicrobial β-peptides from polyelectrolyte multilayers

de L. Rodriguez Lopez, A.; Lee, M.-R.; Whitehead, R.; Lynn, D. M.; Palecek, S. P.

10.1101/431205 — bioengineering — Posted on 2018-09-30

35 A conserved morphogenetic mechanism for epidermal ensheathment of nociceptive sensory neurites

Jiang, N.; Rasmussen, J. P.; Clanton, J. A.; Rosenberg, M.; Luedke, K. P.; Cronan, M. R.; Parker, E.; Kim, H.-J.; Vaughan, J. C.; Sagasti, A.; Parrish, J.

10.1101/431197 — neuroscience — Posted on 2018-09-30

36 A Genetically Engineered Primary Human Natural Killer Cell Platform for Cancer Immunotherapy

Pomeroy, E. J.; Hunzeker, J. T.; Kluesner, M. T.; Crosby, M. R.; Lahr, W. S.; Bendzick, L.; Miller, J. S.; Webber, B. R.; Geller, M. A.; Walcheck, B.; Felices, M.; Starr, T. K.; Moriarity, B. S.

10.1101/430553 — immunology — Posted on 2018-09-29

37 The evolution of stage-specific virulence: differential selection of parasites in juveniles

Iritani, R.; Visher, E.; Boots, M.

10.1101/324632 — ecology — Posted on 2018-09-29

38 Plants maximize competition while minimizing competitors belowground: a theoretical analysis of incentives for root competition in space

Farrior, C. E.

10.1101/430504 — ecology — Posted on 2018-09-29

39 Group ICA for Identifying Biomarkers in Schizophrenia: ‘Adaptive’ Networks via Spatially Constrained ICA Show More Sensitivity to Group Differences than Spatio-temporal Regression

Salman, M. S.; Du, Y.; Lin, D.; Fu, Z.; Damaraju, E.; Sui, J.; Chen, J.; Yu, Q.; Mayer, A. R.; Posse, S.; Mathalon, D. H.; Ford, J. M.; Erp, T. V.; Calhoun, V. D.

10.1101/429837 — neuroscience — Posted on 2018-09-29

40 Dynamic network partnerships and social contagion drive cooperation

Dakin, R.; Ryder, T. B.

10.1101/430843 — animal behavior and cognition — Posted on 2018-09-29

41 Boosting subdominant neutralizing antibody responses with a computationally designed epitope-focused immunogen

Sesterhenn, F.; Galloux, M.; Vollers, S. S.; Csepregi, L.; Yang, C.; Descamps, D.; Bonet, J.; Friedensohn, S.; Gainza, P.; Corthesy, P.; Chen, M.; Rosset, S.; Rameix-Welti, M.-A.; Eleouet, J.-F.; Reddy, S. T.; Graham, B. S.; Riffault, S.; Correia, B.

10.1101/430157 — immunology — Posted on 2018-09-29

42 SMARTer single cell total RNA sequencing

Verboom, K.; Everaert, C.; Bolduc, N.; Livak, K. J.; Yigit, N.; Rombaut, D.; Anckaert, J.; Veno, M. T.; Kjems, J.; Speleman, F.; Mestdagh, P.; Vandesompele, J.

10.1101/430090 — genomics — Posted on 2018-09-29

43 Changes in social groups across reintroductions and effects on post-release survival

Franks, V. R.; Andrews, C. E.; Ewen, J. G.; McCready, M.; Parker, K. A.; Thorogood, R.

10.1101/430280 — animal behavior and cognition — Posted on 2018-09-29

44 Mapping the complex paracrine response to hormones in the human breast at single-cell resolution

Murrow, L. M.; Weber, R. J.; Caruso, J.; McGinnis, C. S.; Borowsky, A. D.; Desai, T. A.; Thomson, M.; Tlsty, T. D.; Gartner, Z. J.

10.1101/430611 — systems biology — Posted on 2018-09-29

45 Everyday taxi drivers: Do better navigators have larger hippocampi?

Weisberg, S. M.; Newcombe, N. S.; Chatterjee, A.

10.1101/431155 — neuroscience — Posted on 2018-09-29

46 Minimum Information for Reusable Arthropod Abundance Data (MIReAAD)

Rund, S. S. C.; Braak, K.; Cator, L.; Copas, K.; Emrich, S. J.; Giraldo-Calderon, G. I.; Johansson, M. A.; Heydari, N.; Hobern, D.; Kelly, S. A.; Lawson, D.; Lord, C.; MacCallum, R. M.; Roche, D. G.; Ryan, S. J.; Schigel, D.; Vandegrift, K.; Watts, M.; Zaspel, J. M.; Pawar, S.

10.1101/429142 — ecology — Posted on 2018-09-29

47 Agent-based model of multicellular tumor spheroid evolution including cell metabolism

Cleri, F.

10.1101/431163 — biophysics — Posted on 2018-09-29

48 CRISPRa-mediated Kcna1 upregulation decreases neuronal excitability and suppresses seizures in a rodent model of temporal lobe epilepsy

Colasante, G.; Di Berardino, C.; Qiu, Y.; Massimino, L.; Cornford, J.; Snowball, A.; Jones, S. P.; Giannelli, S.; Lieb, A.; Schorge, S.; Kullmann, D. M.; Broccoli, V.; Lignani, G.

10.1101/431015 — neuroscience — Posted on 2018-09-29

49 Impaired cognitive performance under psycho-social stress in cannabis dependence is mediated by attenuated precuneus activity

Zhao, W.; Zimmermann, K.; Zhou, X.; Zhou, F.; Fu, M.; Dernbach, C.; Scheele, D.; Weber, B.; Eckstein, M.; Hurlemann, R.; Kendrick, K.; Becker, B.

10.1101/429951 — neuroscience — Posted on 2018-09-29

50 Characterizing the pathogenic, genomic, and chemical traits of Aspergillus fischeri, the closest sequenced relative of the major human fungal pathogen Aspergillus fumigatus

Mead, M. E.; Knowles, S. L.; Raja, H. A.; Beattie, S. R.; Kowalski, C. H.; Steenwyk, J. L.; Silva, L. P.; Chiaratto, J.; Ries, L. N.; Goldman, G. H.; Cramer, R. A.; Oberlies, N. H.; Rokas, A.

10.1101/430728 — microbiology — Posted on 2018-09-29

51 Dynamic interaction network inference from longitudinal microbiome data

Lugo-Martinez, J.; Ruiz-Perez, D.; Narasimhan, G.; Bar-Joseph, Z.

10.1101/430462 — microbiology — Posted on 2018-09-29

52 Enspara: Modeling molecular ensembles with scalable data structures and parallel computing

Porter, J.; Zimmerman, M. I.; Bowman, G. R.

10.1101/431072 — biophysics — Posted on 2018-09-29

53 14-helical β-peptides Elicit Toxicity against C. albicans by Forming Pores in the Cell Membrane and Subsequently Disrupting Intracellular Organelles

Lee, M.-R.; Raman, N.; Ortiz-Bermudez, P.; Lynn, D. M.; Palecek, S.

10.1101/430850 — bioengineering — Posted on 2018-09-29

54 Copy parents or follow friends? Juvenile foraging behaviour changes with social environment

Franks, V. R.; Ewen, J. G.; McCready, M.; Thorogood, R.

10.1101/429688 — animal behavior and cognition — Posted on 2018-09-29

55 Quantifying individual differences in brain morphometry underlying symptom severity in Autism Spectrum Disorders

Pua, E. P.; Ball, G.; Adamson, C.; Bowden, S.; Seal, M.

10.1101/430355 — neuroscience — Posted on 2018-09-29

56 Alternative translation initiation generates a functionally distinct isoform of the stress-activated kinase MK2

Trulley, P.; Snieckute, G.; Bekker-Jensen, D.; Menon, M. B.; Freund, R.; Kotlyarov, A.; Olsen, J. V.; Diaz-Munoz, M. D.; Turner, M.; Bekker-Jensen, S.; Gaestel, M.; Tiedje, C.

10.1101/429696 — molecular biology — Posted on 2018-09-29

57 Evaluating intraspecific diversity of a fish population using environmental DNA: An approach to distinguish true haplotypes from erroneous sequences

Tsuji, S.; Miya, M.; Ushio, M.; Sato, H.; Minamoto, T.; Yamanaka, H.

10.1101/429993 — molecular biology — Posted on 2018-09-29

58 Fine-scale recombination landscapes between a freshwater and marine population of threespine stickleback fish

Shanfelter, A.; Archambeault, S. L.; White, M. A.

10.1101/430249 — genomics — Posted on 2018-09-29

59 Size-based ecological interactions drive food web responses to climate warming

Lindmark, M.; Ohlberger, J.; Huss, M.; Gardmark, A.

10.1101/430082 — ecology — Posted on 2018-09-29

60 Par-Cteno-Genesis or Cteno Par-Genesis

Salinas-Saavedra, M.; Martindale, M. Q.

10.1101/431114 — developmental biology — Posted on 2018-09-29

61 CANCERSIGN: a user-friendly and robust tool for identification and classification of mutational signatures and patterns in cancer genomes

Bayati, M.; Rabiee, H. R.; Mehrbod, M.; Vafaee, F.; Ebrahimi, D.; Forrest, A.; Alinejad-Rokny, H.

10.1101/424960 — bioinformatics — Posted on 2018-09-29

62 Gsmodutils: A python based framework for test-driven genome scale metabolic model development

Gilbert, J. P.; Pearcy, N.; Norman, R.; Millat, T.; Winzer, K.; King, J.; Hodgman, C.; Minton, N.; Twycross, J.

10.1101/430116 — bioinformatics — Posted on 2018-09-29

63 LTMG (Left truncated mixture Gaussian) based modeling of transcriptional regulatory heterogeneities in single cell RNA-seq data - a perspective from the kinetics of mRNA metabolism

Wan, C.; Chang, W.; Zhang, Y.; Shah, F.; Cao, S.; Chen, X.; Fishel, M.; Ma, Q.; Zhang, C.

10.1101/430009 — bioinformatics — Posted on 2018-09-29

64 System-level analysis of metabolic trade-offs during anaerobic photoheterotrophic growth in Rhodopseudomonas palustris

Navid, A.; Jiao, Y.; Wong, S. E.; Pett-Ridge, J.

10.1101/430751 — systems biology — Posted on 2018-09-29

65 Notch2 signaling regulates Id4 and cell cycle genes to maintain neural stem cell quiescence in the adult hippocampus

Zhang, R.; Boareto, M.; Engler, A.; Louvi, A.; Giachino, C.; Iber, D.; Taylor, V.

10.1101/420620 — neuroscience — Posted on 2018-09-29

66 Panton-Valentine leukocidin is the key determinant of Staphylococcus aureus pyomyositis in a bacterial genome-wide association study

Young, B. C.; Earle, S. G.; Soeng, S.; Sar, P.; Kumar, V.; Hor, S.; Sar, V.; Bousfield, R.; Sanderson, N. D.; Barker, L.; Stoesser, N.; Emary, K. R.; Parry, C. M.; Nickerson, E. K.; Turner, P.; Bowden, R.; Crook, D.; Wyllie, D.; Day, N. P.; Wilson, D. J.; Moore, C. E.

10.1101/430538 — microbiology — Posted on 2018-09-29

67 Leveraging brain cortex-derived molecular data to elucidate epigenetic and transcriptomic drivers of neurological function and disease

Hatcher, C.; Relton, C. L.; Gaunt, T. R.; Richardson, T. G.

10.1101/429134 — genetics — Posted on 2018-09-29

68 Structural Basis for Antiarrhythmic Drug Interactions with the Human Cardiac Sodium Channel

Nguyen, P. T.; DeMarco, K. R.; Vorobyov, I.; Clancy, C. E.; Yarov-Yarovoy, V.

10.1101/430934 — biophysics — Posted on 2018-09-29

69 Investigation of putative regulatory acetylation sites in Fas2p of Saccharomyces cerevisiae

Bergman, A.; Wenning, L.; Siewers, V.; Nielsen, J.

10.1101/430918 — bioengineering — Posted on 2018-09-29

70 Crystal structures reveal that Lewis-x and fucose bind to secondary cholera toxin binding site - in contrast to fucosyl-GM1

Heim, J. B.; Hodnik, V.; Heggelund, J. E.; Anderluh, G.; Krengel, U.

10.1101/431130 — biochemistry — Posted on 2018-09-29

71 Effect of Thiobacillus and superabsorbent on essential oil components in Thyme species

Pouramini, P.; Fotokian, M. H.; Dehghan, H.; Hensel, G.

10.1101/430983 — plant biology — Posted on 2018-09-29

72 Switching toxic protein function in life cells

Dissmeyer, N.; Faden, F.; Mielke, S.

10.1101/430439 — plant biology — Posted on 2018-09-29

73 Two types of slow waves in anesthetized and sleeping brains

Nghiem, T.-A. E. E.; Tort-Colet, N.; Gorski, T.; Ferrari, U.; Moghimyfiroozabad, S.; Goldman, J. S.; Telenczuk, B.; Capone, C.; Bal, T.; di Volo, M.; Destexhe, A.

10.1101/430405 — neuroscience — Posted on 2018-09-29

74 Reduced frontal gamma power at 24 months is associated with better expressive language in toddlers at risk for autism

Wilkinson, C. L.; Levin, A. R.; Gabard-Durnam, L. J.; Tager-Flusberg, H.; Nelson, C. A.

10.1101/430421 — neuroscience — Posted on 2018-09-29

75 Ethanol decreases Pseudomonas aeruginosa flagellar motility through a cyclic-di-GMP- and stator-dependent pathway

Lewis, K. A.; Baker, A. E.; Chen, A. I.; Harty, C. E.; Kuchma, S.; O'Toole, G.; Hogan, D. A.

10.1101/430884 — microbiology — Posted on 2018-09-29

76 A Genetically Engineered Primary Human Natural Killer Cell Platform for Cancer Immunotherapy

Pomeroy, E. J.; Hunzeker, J. T.; Kluesner, M. T.; Crosby, M. R.; Lahr, W. S.; Bendzick, L.; Miller, J. S.; Webber, B. R.; Geller, M. A.; Walcheck, B.; Felices, M.; Starr, T. K.; Moriarity, B. S.

10.1101/430553 — immunology — Posted on 2018-09-29

77 Estimating yields of prenatal carrier screening and implications for design of expanded carrier screening panels

Guo, M. H.; Gregg, A. R.

10.1101/429050 — genomics — Posted on 2018-09-29

78 A Data-Driven Evaluation of the Size and Content of Expanded Carrier Screening Panels

Ben-Shachar, R.; Svenson, A.; Goldberg, J. D.; Muzzey, D.

10.1101/430546 — genetics — Posted on 2018-09-29

79 Is there a BMAA transfer in the pelagic and benthic food webs in the Baltic Sea?

Zguna, N.; Karlson, A.; Ilag, L. L.; Garbaras, A.; Gorokhova, E.

10.1101/430330 — ecology — Posted on 2018-09-29

80 Induction of Sertoli cells from human fibroblasts by NR5A1 and GATA4

Liang, J.; Wang, N.; He, J.; Du, J.; Guo, Y.; Li, L.; Kee, K.

10.1101/430900 — developmental biology — Posted on 2018-09-29

81 Identification and in silico analysis of the origin recognition complex in the human fungal pathogen Candida albicans

Padmanabhan, S.; Sanyal, K.; Dubey, D.

10.1101/430892 — bioinformatics — Posted on 2018-09-29

82 Divergent neuronal DNA methylation patterns across human cortical development: Critical periods and a unique role of CpH methylation

Price, A. J.; Collado-Torres, L.; Ivanov, N. A.; Xia, W.; Burke, E. E.; Shin, J. H.; Tao, R.; Ma, L.; Jia, Y.; Hyde, T. M.; Kleinman, J. E.; Weinberger, D. R.; Jaffe, A. E.

10.1101/428391 — neuroscience — Posted on 2018-09-29

83 Nasal respiration entrains neocortical long-range gamma coherence during wakefulness

Cavelli, M.; Castro-Zaballa, S.; Gonzalez, J.; Rojas-Libano, D.; Rubido, N.; Velasquez, N.; Torterolo, P.

10.1101/430579 — neuroscience — Posted on 2018-09-29

84 Brittleness in model selection analysis of single neuron firing rates

Chandrasekaran, C.; Soldado-Magraner, J.; Peixoto, D.; Newsome, W. T.; Shenoy, K.; Sahani, M.

10.1101/430710 — neuroscience — Posted on 2018-09-29

85 Lovastatin, not simvastatin, corrects core phenotypes in the fragile X mouse model

Muscas, M.; Louros, S. R.; Osterweil, E. K.

10.1101/430348 — neuroscience — Posted on 2018-09-29

86 High diversity, turnover, and structural constraints characterize TCR α and β repertoire selection

Kamga, L.; Gil, A.; Song, I.; Chirravuri, R.; Aslan, N.; Ghersi, D.; Stern, L. J.; Selin, L. K.; Luzuriaga, K.

10.1101/428623 — immunology — Posted on 2018-09-29

87 Predicting gene expression in the human malaria parasite Plasmodium falciparum

Read, D. F.; Cook, K.; Lu, Y. Y.; Le Roch, K.; Noble, W.

10.1101/431049 — genomics — Posted on 2018-09-29

88 Integrated DNA methylation and gene expression profiling across multiple brain regions implicate novel genes in Alzheimer’s disease

Semick, S. A.; Bharadwaj, R. A.; Collado-Torres, L.; Tao, R.; Shin, J. H.; Deep-Soboslay, A.; Weiss, J.; Weinberger, D. R.; Hyde, T. M.; Kleinman, J. E.; Jaffe, A. E.; Mattay, V. S.

10.1101/430603 — genomics — Posted on 2018-09-29

89 Conserved mechanism of nucleoporin regulation of the Kcnq1ot1 imprinted domain with divergence in embryonic and trophoblast stem cells

Sachani, S.; MacDonald, W.; Foulkrod, A.; White, C.; Zhang, L.; Mann, M.

10.1101/430694 — genetics — Posted on 2018-09-29

90 A phylogenomic resolution of the sea urchin tree of life

Mongiardino Koch, N.; Coppard, S. E.; Lessios, H. A.; Briggs, D. E.; Mooi, R.; Rouse, G. W.

10.1101/430595 — evolutionary biology — Posted on 2018-09-29

91 Transcriptional initiation and mechanically driven self-propagation of a tissue contractile wave during axis elongation

Bailles, A.; Collinet, C.; Philippe, J.-M.; Lenne, P.-F.; Munro, E.; Lecuit, T.

10.1101/430512 — developmental biology — Posted on 2018-09-29

92 DISNET: Disease understanding through complex networks creation and analysis

Lagunes Garcia, G.; Rodriguez Gonzalez, A.; Prieto Santamaria, L.; Garcia del Valle, E. P.; Zanin, M.; Menasalvas Ruiz, E.

10.1101/428201 — bioinformatics — Posted on 2018-09-29

93 Model colibactins exhibit human cell genotoxicity in the absence of host bacteria

Shine, E. E.; Xue, M.; Patel, J. R.; Healy, A. R.; Surovtseva, Y. V.; Herzon, S.; Crawford, J. M.

10.1101/431098 — cancer biology — Posted on 2018-09-29

94 Pre-saccadic Rise Neurons In The Hindbrain Control The Timing Of Spontaneous Saccades

Ramirez, A. D.; Aksay, E. R. F.

10.1101/430645 — neuroscience — Posted on 2018-09-29

95 How optimal foragers should respond to habitat changes? On the consequences of habitat conversion.

Calcagno, V.; Hamelin, F.; Mailleret, L.; Grognard, F.

10.1101/273557 — ecology — Posted on 2018-09-29

96 Orientation processing by synaptic integration across first-order tactile neurons

Hay, E.; Pruszynski, J. A.

10.1101/396705 — neuroscience — Posted on 2018-09-29

97 Cancer as a tissue anomaly: classifying tumor transcriptomes based only on healthy data

Quinn, T. P.; Nguyen, T.; Lee, S. C.; Venkatesh, S.

10.1101/426395 — bioinformatics — Posted on 2018-09-29

98 A model of the entrance pupil of the human eye

Aguirre, G. K.

10.1101/325548 — neuroscience — Posted on 2018-09-29

99 A mouse tissue atlas of small non-coding RNA

Isakova, A.; Quake, S.

10.1101/430561 — genomics — Posted on 2018-09-29

100 Ratio-based sensing of two transcription factors regulates the transit to differentiation

Bernasek, S. M.; Boisclair Lachance, J.-F.; Pelaez, N.; Bakker, R.; Navarro, H. T.; Amaral, L. A. N.; Bagheri, N.; Rebay, I.; Carthew, R. W.

10.1101/430744 — developmental biology — Posted on 2018-09-29

101 Miltefosine increased cholesterol efflux, induced autophagy and inhibited NLRP3-inflammasome assembly and IL-1β release.

Iacano, A. J.; Lewis, H.; Hazen, J. E.; Andro, H.; Brubaker, G.; Raheem, B. A.; Smith, J. D.; Gulshan, K.

10.1101/430769 — cell biology — Posted on 2018-09-29

102 Widespread gene duplication and adaptive evolution in the RNA interference pathways of the Drosophila obscura group

Crysnanto, D.; Obbard, D.

10.1101/429894 — evolutionary biology — Posted on 2018-09-29

103 Comparative evidence for the independent evolution of hair and sweat gland traits in primates

Kamberov, Y. G.; Guhan, S. M.; DeMarchis, A.; Jiang, J.; Wright, S. S.; Morgan, B. A.; Sabeti, P. C.; Tabin, C. J.; Lieberman, D. E.

10.1101/430454 — evolutionary biology — Posted on 2018-09-29

104 Mechanism of IRSp53 inhibition by 14-3-3

Kast, D. J.; Dominguez, R.

10.1101/430827 — biochemistry — Posted on 2018-09-29

105 The sleep gene insomniac ubiquitinates targets at postsynaptic densities and is required for retrograde homeostatic signaling

Kikuma, K.; Li, X.; Perry, S.; Li, Q.; Goel, P.; Chen, C.; Kim, D.; Stavropoulos, N.; Dickman, D.

10.1101/430819 — neuroscience — Posted on 2018-09-29

106 Escalation and constraints of antagonistic armaments in water striders

Crumiere, A. J. J.; Armisen, D.; Vargas-Lowman, A.; Kubarakos, M.; Moreira, F. F. F.; Khila, A.

10.1101/430322 — evolutionary biology — Posted on 2018-09-29

107 Computational estimation of ms-sec atomistic folding times

Adhikari, U.; Mostofian, B.; Petersen, A.; Zuckerman, D. M.

10.1101/427393 — biophysics — Posted on 2018-09-29

108 High-Performance Image-Based Measurements of Biological Forces and Interactions in a Dual Optical Trap

Killian, J.; Inman, J.; Wang, M. D.

10.1101/430686 — biophysics — Posted on 2018-09-29

109 Stage-specific transcriptomes and DNA methylomes indicate an early and transient loss of transposon control in Arabidopsis shoot stem cells

Mittelsten Scheid, O.; Gutzat, R.; Rembart, K.; Nussbaumer, T.; Pisupati, R.; Hofmann, F.; Bradamante, G.; Daubel, N.; Gaidora, A.; Lettner, N.; Dona, M.; Nordborg, M.; Nodine, M.

10.1101/430447 — developmental biology — Posted on 2018-09-29

110 An oxide transport chain essential for balanced insulin signaling

Wu, X.; Chen, K.; Williams, K. J.

10.1101/430637 — cell biology — Posted on 2018-09-29

111 Autoamplification and competition drive symmetry breaking: Initiation of centriole duplication by the PLK4-STIL network

Leda, M.; Holland, A. J.; Goryachev, A. B.

10.1101/430264 — cell biology — Posted on 2018-09-29

112 Identification of novel inhibitors of DLK palmitoylation by High Content Screening

Martin, D. D. O.; Kanuparthi, P.; Holland, S. M.; Sanders, S. S.; Jeong, H.-K.; Einarson, M. B.; Jacobson, M.; Thomas, G. M.

10.1101/430629 — neuroscience — Posted on 2018-09-29

113 Spatial and temporal inhibition of FGFR2b ligands reveals continuous requirements and novel targets in mouse inner ear morphogenesis

Urness, L. D.; Wang, X.; Doan, H.; Shumway, N.; Noyes, C. A.; Gutierrez-Magana, E.; Lu, R.; Mansour, S. L.

10.1101/430876 — developmental biology — Posted on 2018-09-29

114 Identification of a Sulf2-dependant astrocyte subtype that stands out through the expression of Olig2 in the ventral spinal cord

Ohayon, D.; Escalas, N.; Cochard, P.; Glise, B.; Danesin, C.; Soula, C.

10.1101/430074 — developmental biology — Posted on 2018-09-29

115 Adaption of artificial microvascular networks

Fredrich, T.; Welter, M.; Rieger, H.

10.1101/429027 — cancer biology — Posted on 2018-09-29

116 Pharmacological inhibition of the amino-acid transporter LAT1 demonstrates in vitro anti-neoplastic activity towards medulloblastoma

Cormerais, Y.; Pagnuzzi-Boncompagni, M.; Schrötter, S.; Giuliano, S.; Tambutte, E.; Endou, H.; Wempe, M. F.; Pages, G.; Pouyssegur, J.; Picco, V.

10.1101/428722 — cancer biology — Posted on 2018-09-29

117 Comparison of tri-exponential decay vs. bi-exponential decay and full fitting vs. segmented fitting for modeling liver intravoxel incoherent motion diffusion MRI

Chevallier, O.; Zhou, N.; Cercueil, J.-P.; He, J.; Loffroy, R.; Wang, Y.-X.

10.1101/429977 — biophysics — Posted on 2018-09-29

118 The Orphan Kinesin PAKRP2 Achieves Processive Motility Via Noncanonical Stepping

Gicking, A. M.; Wang, P.; Liu, C.; Mickolajczyk, K. J.; Guo, L.; Hancock, W. O.; Qiu, W.

10.1101/430736 — biophysics — Posted on 2018-09-29

119 Molecular basis of human asparagine synthetase inhibitor specificity

Zhu, W.; Radadiya, A.; Bisson, C.; Nordin, B.; Baumann, P.; Imasaki, T.; Wenzel, S.; Sedelnikova, S.; Berry, A.; Nomanbhoy, T.; Kozarich, J.; Jin, Y.; Takagi, Y.; Rice, D.; Richards, N.

10.1101/428508 — biochemistry — Posted on 2018-09-29

120 Specificity for deubiquitination of monoubiquitinated FANCD2 is driven by the N-terminus of USP1

Arkinson, C.; Chaugule, V. K.; Toth, R.; Walden, H.

10.1101/430124 — biochemistry — Posted on 2018-09-29

121 Host JAK/Stat activity is a target of endoparasitoid wasp virulence strategies

Brantley, S. E.; Mortimer, N. T.; Schlenke, T. A.

10.1101/423335 — cell biology — Posted on 2018-09-29

122 Pathogen Detection and Microbiome Analysis of Infected Wheat Using a Portable DNA Sequencer

Hu, Y.; Green, G.; Milgate, A.; Stone, E.; Rathjen, J.; Schwessinger, B.

10.1101/429878 — plant biology — Posted on 2018-09-29

123 Reconstructing the human first trimester fetal-maternal interface using single cell transcriptomics

Vento-Tormo, R.; Efremova, M.; Botting, R. A.; Turco, M. Y.; Vento-Tormo, M.; Meyer, K. B.; Park, J.; Stephenson, E.; Polanski, K.; Payne, R. P.; Goncalves, A.; Zou, A.; Henriksson, J.; Wood, L.; Lisgo, S.; Filby, A.; Wright, G. J.; Stubbington, M. J.; Haniffa, M.; Moffett, A.; Teichmann, S. A.

10.1101/429589 — developmental biology — Posted on 2018-09-29

124 Single-molecule live cell imaging of Rep reveals the dynamic interplay between an accessory replicative helicase and the replisome

Syeda, A.; Wollman, A.; Harvgreaves, A.; Bruning, J.; McGlynn, P.; Leake, M.

10.1101/430371 — biophysics — Posted on 2018-09-29

125 Mutational impact of culturing human pluripotent and adult stem cells

Kuijk, E.; Jager, M.; van der Roest, B.; Locati, M.; van Hoeck, A.; Korzelius, J.; Janssen, R.; Besselink, N.; Boymans, S.; van Boxtel, R.; Cuppen, E.

10.1101/430165 — genomics — Posted on 2018-09-29

126 Host genetic associations with the gut microbiota in HIV-1-infected subjects: a pilot exploratory study

Guillen, Y.; Noguera-Julian, M.; Rivera, J.; Casadella, M.; Rocafort, M.; Parera, M.; Mothe, B.; Coll, J.; Saz, J.; Navarro, J.; Crespo, M.; Negredo, E.; Brander, C.; Calle, M. L.; Clotet, B.; Paredes, R.

10.1101/427922 — genomics — Posted on 2018-09-29

127 GIGANTEA promotes sorghum flowering by stimulating floral activator gene expression

Harmon, F. G.; Chen, J.; Xin, Z.

10.1101/427492 — plant biology — Posted on 2018-09-29

128 Identification of a novel deltavirus in Boa constrictor

Hetzel, U.; Szirovicza, L.; Smura, T.; Prahauser, B.; Vapalahti, O.; Kipar, A.; Hepojoki, J.

10.1101/429753 — microbiology — Posted on 2018-09-29

129 Win-concurrent sensory cues can promote riskier choice

Cherkasova, M. V.; Clark, L.; Barton, J. J.; Schulzer, M.; Shafiee, M.; Kingstone, A.; Stoessl, A. J.; Winstanley, C. A.

10.1101/323345 — neuroscience — Posted on 2018-09-28

130 GenEpi: Gene-based Epistasis Discovery Using Machine Learning

Chang, Y.-C.; Wu, J.-T.; Hong, M.-Y.; Tung, Y.-A.; Hsieh, P.-H.; Yee, S. W.; Giacomini, K. M.; Oyang, Y.-J.; CHEN, C.-Y.; Alzheimer's Disease Neuroimaging Initiative,

10.1101/421719 — bioinformatics — Posted on 2018-09-28

131 Robust and stable transcriptional repression in Giardia using CRISPRi

McInally, S. G.; Hagen, K. D.; Nosala, C.; Williams, J.; Nguyen, K.; Booker, J.; Jones, K.; Dawson, S. C.

10.1101/358598 — microbiology — Posted on 2018-09-28

132 Estimating the proportion of bystander selection for antibiotic resistance among potentially pathogenic bacterial flora

Tedijanto, C.; Olesen, S.; Grad, Y.; Lipsitch, M.

10.1101/288704 — epidemiology — Posted on 2018-09-28

133 Calcium activation of frequency dependent temporally phasic, localized, and dense population of cortical neurons by continuous electrical stimulation

Michelson, N. J.; Eles, J. R.; Islam, R.; Vazquez, A. L.; Ludwig, K. A.; Kozai, T. D. Y.

10.1101/338525 — neuroscience — Posted on 2018-09-28

134 Reversible disruption of specific transcription factor-DNA interactions using CRISPR/Cas9

Shariati, A.; Dominguez, A.; Wernig, M.; Qi, S.; Skotheim, J.

10.1101/282681 — molecular biology — Posted on 2018-09-28

135 Whole genome sequencing for predicting clarithromycin resistance in Mycobacterium abscessus

Lipworth, S. I. W.; Hough, N.; Leach, L.; Morgan, M.; Jeffrey, K.; Andersson, M.; Robinson, E.; Smith, G.; Crook, D.; Peto, T.; Walker, T.

10.1101/251918 — microbiology — Posted on 2018-09-28

136 Fine-grained habitat-associated genetic connectivity in an admixed population of mussels in the small isolated Kerguelen Islands

Fraisse, C.; Haguenauer, A.; Gerard, K.; Weber, A. A.-T.; Bierne, N.; Chenuil, A.

10.1101/239244 — evolutionary biology — Posted on 2018-09-28

137 Distinct contributions of tensile and shear stress on E-cadherin levels during morphogenesis

Kale, G. R.; Yang, X.; Philippe, J.-M.; Mani, M.; Lenne, P.-F.; Lecuit, T.

10.1101/255158 — cell biology — Posted on 2018-09-28

138 Reversible block of cerebellar outflow reveals cortical circuitry for motor coordination

Nashef, A.; Cohen, O.; Harel, R.; Israel, Z.; Prut, Y.

10.1101/429043 — neuroscience — Posted on 2018-09-28

139 Alteration of Vascular Endothelial Cadherin in Alzheimer’s Disease Patient and Mouse Model

Lee, D.; Cho, S.-J.; Lim, H. J.; Seok, J.; Jo, C.; Jo, S. A.; Park, M. H.; Han, C.; Kowall, N. W.; Ryu, H.; Tanzi, R. E.; Koh, Y. H.

10.1101/430140 — neuroscience — Posted on 2018-09-28

140 Regulation of arousal via on-line neurofeedback improves human performance in a demanding sensory-motor task

Faller, J.; Cummings, J.; Saproo, S.; Sajda, P.

10.1101/428755 — neuroscience — Posted on 2018-09-28

141 Trained-feature specific offline learning in an orientation detection task

Tamaki, M.; Wang, Z.; Watanabe, T.; Sasaki, Y.

10.1101/429761 — neuroscience — Posted on 2018-09-28

142 Astrocytes in the mouse visual cortex reliably respond to visual stimulation

Sonoda, K.; Matsui, T.; Bito, H.; Ohki, K.

10.1101/429985 — neuroscience — Posted on 2018-09-28

143 Analysis of EEG networks and their correlation with cognitive impairment in preschool children with epilepsy

Kinney-Lang, E.; Yoong, M.; Hunter, M.; Tallur, K. K.; Shetty, J.; McLellan, A.; Chin, R. F.; Escudero, J.

10.1101/237172 — neuroscience — Posted on 2018-09-28

144 Estimating the Biological Validity of the DSM for Attention Deficit/Hyperactivity Disorder Using Multivariate Analysis for Small Samples

Abramov, D. M.; Gomes-Junior, S.-C.; Mourao-Junior, C. A.; Pontes, A. T.; Rodrigues, C. Q. C.; Pontes, M. C.; Vieira, J.; Galhanone, P. R.; deAzevedo, L. C.; Lazarev, V. V.

10.1101/126433 — neuroscience — Posted on 2018-09-28

145 Integrated identification and quantification error probabilities for shotgun proteomics

The, M.; Käll, L.

10.1101/357285 — bioinformatics — Posted on 2018-09-28

146 Extracellular matrix stiffness regulates force transmission pathways in multicellular ensembles of human airway smooth muscle cells.

Polio, S. R.; Stasiak, S.; Krishnan, R.; Parameswaran, H.

10.1101/402842 — bioengineering — Posted on 2018-09-28

147 Haplotype Analysis of the TRB Locus by TCRB Repertoire Sequencing

Looney, T. J.; Duose, D. Y.; Lowman, G.; Linch, E.; Hajjar, J.; Topacio-Hall, D.; Xu, M.; Zheng, J.; Alshawa, A.; Tapia, C.; Stephen, B.; Wang, L.; Meric-Bernstam, F.; Miller, L.; Glavin, A.; Lin, L.; Gong, J.; Conroy, J.; Morrison, C.; Hyland, F.; Naing, A.

10.1101/406157 — immunology — Posted on 2018-09-28

148 Functional Interpretation of Single-Cell Similarity Maps

DeTomaso, D.; Jones, M.; Subramaniam, M.; Ashuach, T.; Ye, C. J.; Yosef, N.

10.1101/403055 — bioinformatics — Posted on 2018-09-28

149 Visualizing metabolic network dynamics through time-series metabolomics data

Buchweitz, L. F.; Yurkovich, J. T.; Blessing, C.; Kohler, V.; Schwarzkopf, F.; King, Z. A.; Yang, L.; Johannsson, F.; Sigurjonsson, O.; Rolfsson, O.; Heinrich, J.; Draeger, A.

10.1101/426106 — systems biology — Posted on 2018-09-28

150 Decoding across sensory modalities reveals common supramodal signatures of conscious perception

Sanchez, G.; Hartmann, T.; Fusca, M.; Weisz, N.

10.1101/115535 — neuroscience — Posted on 2018-09-28

151 The bacterial chromatin protein HupA can remodel DNA and associates with the nucleoid in Clostridium difficile

Oliveira Paiva, A. M.; Friggen, A. H.; Qin, L.; Douwes, R.; Dame, R. T.; Smits, W. K.

10.1101/426809 — microbiology — Posted on 2018-09-28

152 Novel Comparison of Evaluation Metrics for Gene Ontology Classifiers Reveals Drastic Performance Differences

Plyusnin, I.; Holm, L.; Törönen, P.

10.1101/427096 — bioinformatics — Posted on 2018-09-28

153 In silico investigation of coding variants potentially affecting the functioning of the glutamatergic N-methyl-D-aspartate receptor in schizophrenia

Tzavou, A.; Curtis, D.

10.1101/429258 — genetics — Posted on 2018-09-28

154 Origin and evolution of papillomavirus (onco)genes and genomes

Willemsen, A.; Bravo, I. G.

10.1101/428912 — evolutionary biology — Posted on 2018-09-28

155 Imaging of red-shifted photons from bioluminescent tumours using fluorescence by unbound excitation from luminescence

Sonego, F.; Bouccara, S.; Pons, T.; Lequeux, N.; Danckaert, A.; Tinevez, J.-Y.; Alam, I. S.; Shorte, S. L.; Tournebize, R.

10.1101/428771 — bioengineering — Posted on 2018-09-28

156 C4 photosynthesis and climate through the lens of optimality

Zhou, H.; Helliker, B.; Akcay, E.

10.1101/048900 — evolutionary biology — Posted on 2018-09-28

157 MET-2, a SETDB1 family methyltransferase, coordinates embryo events through distinct histone H3 methylation states

Mutlu, B.; Chen, H.-M. M.; Hall, D. H.; Mango, S. E.

10.1101/429902 — developmental biology — Posted on 2018-09-28

158 Enhanced population coding for rewarded choices in the medial frontal cortex of the mouse

Siniscalchi, M. J.; Wang, H.; Kwan, A. C.

10.1101/429852 — neuroscience — Posted on 2018-09-28

159 MISSED OPPORTUNITIES OF CHLAMYDIA AND GONORRHEA DETECTION WHEN NOT USING EXTRA GENITAL SCREENING AMONG MALES

Schafer, C. A.; Prado, B.; Barin, N.; Gama, L.

10.1101/428706 — epidemiology — Posted on 2018-09-28

160 Fatiguing Effects of Indirect Vibration Stimulation in Upper Limb Muscles- pre, post and during Isometric Contractions Superimposed on Upper Limb Vibration

Pujari, A. N.; Neilson, R. D.; Cardinale, M.

10.1101/429407 — bioengineering — Posted on 2018-09-28

161 The buoyant cell density of Cryptococcus neoformans is affected by capsule size

Vij, R.; Cordero, R. J.; Casadevall, A.

10.1101/429936 — microbiology — Posted on 2018-09-28

162 The UCSC Repeat Browser allows discovery and visualization of evolutionary conflict across repeat families

Fernandes, J. D.; Haeussler, M.; Zamudio-Hurtado, A.; Kent, W. J.; Salama, S.; Haussler, D.

10.1101/429613 — genomics — Posted on 2018-09-28

163 The impact of spatial and temporal dimensions of disturbances on ecosystem stability

Zelnik, Y.; Arnoldi, J.-F.; Loreau, M.

10.1101/429100 — ecology — Posted on 2018-09-28

164 In model-based fMRI significant is less than specific

Peterson, E. J.; Seger, C. A.

10.1101/429621 — neuroscience — Posted on 2018-09-28

165 Truncating Variant Burden in High Functioning Autism and Pleiotropic Effects of LRP1 Across Psychiatric Phenotypes

Torrico, B.; Shaw, A. D.; Mosca, R.; Vivo-Luque, N.; Hervas, A.; Fernandez-Castillo, N.; Aloy, P.; Bayes, M.; Fullerton, J.; Cormand, B.; Toma, C.

10.1101/429779 — genomics — Posted on 2018-09-28

166 Neutools: A collection of bioinformatics web tools for neurogenomic analysis

Gao, F.; Cam, H. P.; Tsai, L.-H.

10.1101/429639 — bioinformatics — Posted on 2018-09-28

167 Optimal control of acute myeloid leukaemia

Sharp, J.; Browning, A.; Mapder, T.; Burrage, K.; Simpson, M.

10.1101/429811 — synthetic biology — Posted on 2018-09-28

168 The ecology of sexual conflict: behaviorally plastic responses to temperature variation in the social environment can drastically modulate male harm to females.

Garcia-Roa, R.; Chirinos, V.; Carazo, P.

10.1101/429514 — evolutionary biology — Posted on 2018-09-28

169 Coexistence and cooperation in structured habitats

Geyrhofer, L.; Brenner, N.

10.1101/429605 — evolutionary biology — Posted on 2018-09-28

170 AhRLK1, a CLAVATA1-like leucine-rich repeat receptor-like kinase of peanut, confers increased resistance to bacterial wilt in tobacco

Zhang, C.; Chen, H.; Zhuang, R.-R.; Chen, Y.-T.; Deng, Y.; Cai, T.-C.; Wang, S.-Y.; Liu, Q.-Z.; Tang, R.-H.; Shan, S.; Pan, R.-L.; Chen, L.-S.; Zhuang, W.-J.

10.1101/430066 — plant biology — Posted on 2018-09-28

171 Caries Prevalence and Experience in Individuals with Osteogenesis Imperfecta

Ma, M. S.; Najirad, M.; Taqi, D.; Retrouvey, J.-M.; Tamimi, F.; Dagdeviren, D.; Glorieux, F.; Lee, B.; Sutton, V.; Rauch, F.; Esfandiari, S.

10.1101/418806 — epidemiology — Posted on 2018-09-28

172 An Empirical Demonstration of Unsupervised Machine Learning in Species Delimitation

Derkarabetian, S.; Castillo, S.; Koo, P. K.; Ovchinnikov, S.; Hedin, M.

10.1101/429662 — evolutionary biology — Posted on 2018-09-28

173 Mechanistic basis for the evolution of chalcone synthase catalytic cysteine reactivity in land plants

Liou, G.; Chiang, Y.-C.; Wang, Y.; Weng, J.-K.

10.1101/429795 — biochemistry — Posted on 2018-09-28

174 Cyclophosphamide immunosuppressed Xid mice model clarify the protective role of B cells in experimental encephalitozoonosis

Moyses, C. R. S.; da Costa, L. F. V.; Perez, E. C.; Xavier, J. G.; Spadacci-Morena, D. D.; Rocha, P. R. D.; Alvares-Saraiva, A. M.; Lallo, M. A.

10.1101/430256 — pathology — Posted on 2018-09-28

175 Early Genomic Detection of an Outbreak of Dengue Virus 2 Cosmopolitan Genotype in Angola, 2018

Hill, S. C.; Vasconcelos, J. N. d.; Granja, B. G.; Theze, J.; Jandondo, D.; Neto, Z.; Mirandela, M.; Sebastiao, C. d. S.; Candido, A. L. M.; Clemente, C.; Silva, S. P. d.; Oliveira, T. d.; Pybubs, O. G.; Faria, N. R.; Afonso, J. M.

10.1101/424747 — epidemiology — Posted on 2018-09-28

176 Biomarker de-Mendelization: principles, potentials and limitations of a strategy to improve biomarker prediction by reducing the component of variance explained by genotype

Kjaergaard, A. D.; Bojesen, S. E.; Nordestgaard, B. G.; Johansen, J. S.; Davey Smith, G.

10.1101/428276 — epidemiology — Posted on 2018-09-28

177 ANKRD31 regulates spatiotemporal patterning of meiotic recombination initiation and ensures recombination between heterologous sex chromosomes in mice

Papanikos, F.; Clement, J. A. J.; Testa, E.; Ravindranathan, R.; Grey, C.; Dereli, I.; Bondarieva, A.; Valerio-Cabrera, S.; Stanzione, M.; Schleiffer, A.; Jansa, P.; Lustyk, D.; Jifeng, F.; Forejt, J.; Barchi, M.; de Massy, B.; Toth, A.

10.1101/423293 — cell biology — Posted on 2018-09-28

178 Chelation therapy using static magnetic field

Shaw, J.; Chakraborty, A.; Chatterjee, S.; Bhattacharyya, M.; Dasgupta, A. K.

10.1101/429597 — epidemiology — Posted on 2018-09-28

179 Connecting surveillance and population-level influenza incidence

Cope, R. C.; Ross, J. V.; Chilver, M.; Stocks, N. P.; Mitchell, L.

10.1101/427708 — epidemiology — Posted on 2018-09-28

180 Industrial bees: when agricultural intensification doesn’t impact local disease prevalence

Bartlett, L. J.; Rozins, C.; Brosi, B. J.; Delaplane, K. S.; de Roode, J. C.; White, A.; Wilfert, L.; Boots, M.

10.1101/428656 — epidemiology — Posted on 2018-09-28

181 Oral Health-Related Quality of Life in Children and Adolescents with Osteogenesis Imperfecta: cross-sectional study

Najirad, M.; Ma, M. S.; Rauch, F.; Reid Sutton, V.; Lee, B.; Retrouvey, J.-M.; Esfandiari, S.

10.1101/424812 — epidemiology — Posted on 2018-09-28

182 Derivation of a simple postoperative delirium incidence and severity prediction model

Lindroth, H.; Bratzke, L.; Twadell, S.; Rowley, P.; Kildow, J.; Danner, M.; Turner, L.; Hernandez, B.; Chang, W.; Brown, R.; Sanders, R. D.

10.1101/426148 — clinical trials — Posted on 2018-09-28

183 A novel nonsense variant in SUPT20H gene associated with Rheumatoid Arthritis identified by Whole Exome Sequencing of multiplex families

Veyssiere, M.; Perea, J.; Michou, L.; Boland, A.; Caloustian, C.; Olaso, R.; Deleuze, J.-F.; Cornelis, F.; Petit-Teixeira, E.; Chaudru, V.

10.1101/430223 — genomics — Posted on 2018-09-28

184 Locus Suicide Recombination actively occurs on the functionally rearranged IgH allele in B-cells from inflamed human lymphoid tissues

Cogne, M.; Dalloul, I.; Boyer, f.; Dalloul, Z.; Pignarre, A.; lacombe, g.; Fest, T.; chatonnet, f.; Delaloy, C.; Durandy, A.; jeannet, r.; lereclus, e.; boutouil, h.; Aldigier, j.-c.; peron, s.; cook-moreau, j.

10.1101/430215 — genetics — Posted on 2018-09-28

185 Effects of annual rainfall on dengue incidence in the Indian state of Rajasthan

Salam, N.

10.1101/423517 — epidemiology — Posted on 2018-09-28

186 Modelling and assessment of combining gilt vaccination, vector control and pig herd management to control Japanese Encephalitis virus transmission in Southeast Asia

Diallo, A. O.; Chevalier, V.; Cappelle, J.; Duboz, R.; Fontenille, D.; Durand, B.

10.1101/430231 — epidemiology — Posted on 2018-09-28

187 Successes and failures of the live-attenuated influenza vaccine, can we do better?

Matrajt, L.; Halloran, M. E.; Antia, R.

10.1101/424275 — epidemiology — Posted on 2018-09-28

188 Interrelationships among key Reproductive Health indicators in Sub-Saharan Africa

Woldegiorgis, M. A.; Meyer, D.; Mekonnen, W.; Hiller, J.; Bhowmik, J.

10.1101/430207 — epidemiology — Posted on 2018-09-28

189 Disrespect and abuse of women during childbirth in public health facilities in Arba Minch town, South Ethiopia - a cross-sectional study

Ukke, G. G.; Gurara, M. K.; Boynito, W. G.

10.1101/430199 — epidemiology — Posted on 2018-09-28

190 Metabolomic analyses of plasma and liver of mice fed with immature Citrus tumida peel

Toyoda, A.; Sato, M.; Muto, M.; Goto, T.; Miyaguchi, Y.; Inoue, E.

10.1101/430181 — biochemistry — Posted on 2018-09-28

191 A theoretical foundation for state-transition cohort models in health decision analysis

Iskandar, R.

10.1101/430173 — epidemiology — Posted on 2018-09-28

192 MET-2, a SETDB1 family methyltransferase, coordinates embryo events through distinct histone H3 methylation states

Mutlu, B.; Chen, H.-M. M.; Hall, D. H.; Mango, S. E.

10.1101/429902 — developmental biology — Posted on 2018-09-28

193 A Dual Controllability Analysis of Influenza Virus-Host Protein-Protein Interaction Networks for Antiviral Drug Target Discovery

Ackerman, E. E.; Alcorn, J. F.; Hase, T.; Shoemaker, J. E.

10.1101/429712 — systems biology — Posted on 2018-09-27

194 Evolution of embryo implantation was enabled by the origin of decidual cells in eutherian mammals

Chavan, A. R.; Griffith, O. W.; Stadtmauer, D.; Maziarz, J.; Pavlicev, M.; Fishman, R.; Koren, L.; Romero, R.; Wagner, G. P.

10.1101/429571 — evolutionary biology — Posted on 2018-09-27

195 Age-dependent visualization of neural progenitor cells within the rostral migratory stream via MRI and endogenously labeled micron-sized iron oxide particles

Shuboni-Mulligan, D. D.; Chakravarty, S.; Mallett, C. L.; Wolf, A. M.; Forton, S.; Shapiro, E. M.

10.1101/429787 — neuroscience — Posted on 2018-09-27

196 Protein Disulfide Isomerases Control the Secretion of Wnt proteins

Torpe, N.; Gopal, S.; Balatci, O.; Rella, L.; Handley, A.; Korswagen, H. C.; Pocock, R.

10.1101/429845 — developmental biology — Posted on 2018-09-27

197 Robust nomenclature and software for enhanced reproducibility in molecular modeling of small molecules

Dashti, H.; Wedell, J.; Cornilescu, G.; Schwieters, C.; Westler, W. M.; Markley, J. L.; Eghbalnia, H. R.

10.1101/429530 — bioinformatics — Posted on 2018-09-27

198 Conserved patterns of alternative splicing in response to cold acclimation in fish

Healy, T. M.; Schulte, P. M.

10.1101/429704 — zoology — Posted on 2018-09-27

199 The N-end rule E3 ligase UBR2 activates Nlrp1b inflammasomes

Xu, H.; Shi, J.; Yang, Z.; Shao, F.; Dong, N.

10.1101/429225 — immunology — Posted on 2018-09-27

200 High-speed atomic force microscopy visualizes mobility of photosynthetic proteins in grana thylakoid membranes

Onoa, B.; Fukuda, S.; Iwai, M.; Bustamante, C.; Niyogi, K. K.

10.1101/426759 — biophysics — Posted on 2018-09-27

201 A Cas9 with Complete PAM Recognition for Adenine Dinucleotides

Jakimo, N.; Chatterjee, P.; Nip, L.; Jacobson, J. M.

10.1101/429654 — bioengineering — Posted on 2018-09-27

202 Comprehensive transcriptomic analysis of cell lines as models of primary tumor samples across 22 tumor types

Yu, K.; Chen, B.; Aran, D.; Charalel, J.; Butte, A.; Goldstein, T.; Sirota, M.

10.1101/422592 — bioinformatics — Posted on 2018-09-27

203 Integrin alpha11 is an Osteolectin receptor and is required for the maintenance of adult skeletal bone mass

Shen, B.; Vardy, K.; Hughes, P.; Tasdogan, A.; Zhao, Z.; Crane, G.; Morrison, S. J.

10.1101/429746 — developmental biology — Posted on 2018-09-27

204 Temperature preference biases parental genome retention during hybrid evolution

Smukowski Heil, C.; Large, C. R. L.; Patterson, K.; Dunham, M. J.

10.1101/429803 — evolutionary biology — Posted on 2018-09-27

205 Female mate choice is a reproductive isolating barrier in Heliconius butterflies

Southcott, L.; Kronforst, M.

10.1101/233270 — animal behavior and cognition — Posted on 2018-09-27

206 The nuclear RNAi factor, NRDE2, prevents the accumulation of DNA damage during mitosis in stressful growth conditions

Asundi, A.; Venkataramanan, S.; Suzuki, A.; Floor, S. N.; Goga, A.; L'Etoile, N.

10.1101/428250 — cell biology — Posted on 2018-09-27

207 The functional organisation of the hippocampus along its long axis is gradual and predicts recollection

Przezdzik, I.; Faber, M.; Fernandez, G.; Beckmann, C. F.; Haak, K. V.

10.1101/428292 — neuroscience — Posted on 2018-09-27

208 Logarithmic molecular sampling for next-generation sequencing

Salzman, J.; Horn, C.

10.1101/420299 — genomics — Posted on 2018-09-27

209 A cellular automaton for modeling non-trivial biomembrane ruptures

Gupta, A.; Reint, G.; Gozen, I.; Taylor, M.

10.1101/429548 — bioengineering — Posted on 2018-09-27

210 The iron-dependent repressor YtgR regulates the tryptophan salvage pathway through a bipartite mechanism of transcriptional control in Chlamydia trachomatis

Pokorzynski, N. D.; Brinkworth, A. J.; Carabeo, R. A.

10.1101/322586 — microbiology — Posted on 2018-09-27

211 A cellular automaton for modeling non-trivial biomembrane ruptures

Gupta, A.; Reint, G.; Gozen, I.; Taylor, M.

10.1101/429548 — bioengineering — Posted on 2018-09-27

212 A high-resolution map of non-crossover events in mice reveals impacts of genetic diversity on meiotic recombination

Li, R.; Bitoun, E.; Altemose, N.; Davies, R. W.; Davies, B.; Myers, S. R.

10.1101/428987 — genetics — Posted on 2018-09-27

213 CrRLK1L receptor-like kinases HERK1 and ANJEA are female determinants of pollen tube reception

Galindo-Trigo, S.; Blanco-Tourinan, N.; DeFalco, T. A.; Zipfel, C.; Gray, J. E.; Smith, L. M.

10.1101/428854 — genetics — Posted on 2018-09-27

214 Relief from nitrogen starvation entails quick unexpected down-regulation of glycolytic/lipid metabolism genes in enological Saccharomyces cerevisiae

Tesniere, C.; Bessiere, C.; Pradal, M.; Sanchez, I.; Blondin, B.; Bigey, F.

10.1101/428979 — microbiology — Posted on 2018-09-27

215 The telomere bouquet is a hub where meiotic double-strand breaks, synapsis, and stable homolog juxtaposition are coordinated in the zebrafish, Danio rerio

Blokhina, Y. P.; Nguyen, A. D.; Draper, B. W.; Burgess, S. M.

10.1101/428086 — genetics — Posted on 2018-09-27

216 Prioritize diversity or declining species? Trade-offs and synergies in spatial planning for the conservation of migratory birds

Wilson, S.; Schuster, R.; Rodewald, A.; Bennett, J.; Smith, A.; Arcese, P.

10.1101/429019 — ecology — Posted on 2018-09-27

217 rstoolbox: management and analysis of computationally designed structural ensembles.

Bonet, J.; Harteveld, Z.; Sesterhenn, F.; Scheck, A.; Correia, B. E.

10.1101/428045 — bioinformatics — Posted on 2018-09-27

218 Social relationships, social isolation, and the human gut microbiota

Dill-McFarland, K.; Tang, Z.-Z.; Kemis, J.; Kerby, R.; Chen, G.; Palloni, A.; Sorenson, T.; Rey, F.; Herd, P.

10.1101/428938 — microbiology — Posted on 2018-09-27

219 Local epigenomic state cannot discriminate interacting and non-interacting enhancer-promoter pairs with high accuracy

Xi, W.; Beer, M. A.

10.1101/420372 — genomics — Posted on 2018-09-27

220 Active WNT vampirization by glioblastoma network leads to brain tumor growth and neurodegeneration

Portela Esteban, M.; Venkataramani, V.; Fahey-Lozano, N.; Seco, E.; Losada-Perez, M.; Winkler, F.; Casas-Tinto, S.

10.1101/428953 — cell biology — Posted on 2018-09-27

221 KRAB Zinc Finger Proteins coordinate across evolutionary time scales to battle retroelements

Fernandes, J. D.; Haeussler, M.; Armstrong, J.; Tigyi, K.; Gu, J.; Filippi, N.; Pierce, J.; Thisner, T.; Angulo, P.; Katzman, S.; Paten, B.; Haussler, D.; Salama, S.

10.1101/429563 — evolutionary biology — Posted on 2018-09-27

222 Redefining Nephrotic Syndrome in Molecular Terms: Outcome-associated molecular clusters and patient stratification with noninvasive surrogate biomarkers

Mariani, L. H.; Eddy, S.; Martini, S.; Eichinger, F.; Godfrey, B.; Nair, V.; Adler, S. G.; Appel, G. B.; Athavale, A.; Barisoni, L.; Brown, E.; Cattran, D. C.; Dell, K. M.; Derebail, V.; Fervenza, F. C.; Fornoni, A.; Gadegbeku, C. A.; Gibson, K. L.; Gipson, D.; Greenbaum, L. A.; Hingorani, S. R.; Hlandunewich, M. A.; Hogan, J.; Holzman, L. B.; Jefferson, J. A.; Kaskel, F. J.; Kopp, J. B.; Lafayette, R. A.; Lemley, K. V.; Lieske, J. C.; Lin, J.-J.; Myers, K. E.; Nachman, P. H.; Nast, C. C.; Neu, A. M.; Reich, H. N.; Sambandam, K.; Sedor, J. R.; Sethna, C. B.; Srivastava, T.; Trachtman, H.; Tran

10.1101/427880 — systems biology — Posted on 2018-09-27

223 Real-time whole-plant dynamics of heavy metal transport in Arabidopsis halleri and Arabidopsis thaliana by gamma-ray imaging

Kajala, K.; Walker, K. L.; Mitchell, G. S.; Kraemer, U.; Cherry, S. R.; Brady, S. M.

10.1101/428417 — plant biology — Posted on 2018-09-27

224 In silico investigation of coding variants potentially affecting the functioning of the glutamatergic N-methyl-D-aspartate receptor in schizophrenia

Tzavou, A.; Curtis, D.

10.1101/429258 — genetics — Posted on 2018-09-27

225 Precision in a rush: trade-offs between reproducibility and steepness of the hunchback expression pattern

Tran, H.; Desponds, J.; Perez Romero, C. A.; Coppey, M.; Fradin, C.; Dostatni, N.; Walczak, A. M.

10.1101/305532 — biophysics — Posted on 2018-09-27

226 Particle-based simulation reveals macromolecular crowding effects on the Michaelis-Menten mechanism

Weilandt, D. R.; Hatzimanikatis, V.

10.1101/429316 — biophysics — Posted on 2018-09-27

227 Subcellular Time Series Modeling of Heterogeneous Cell Protrusion

Kim, Y.; Choi, H. J.; Lee, K.

10.1101/429118 — systems biology — Posted on 2018-09-27

228 Dipeptidyl dipeptidase-4 inhibitor, MK-0626, promotes bone marrow-derived endothelial progenitor cell bioactivities for vascular regeneration in diet-induced obese mice

Asahara, T.; Salybekov, A. A.; Masuda, H.; Miyazaki, K.; Sheng, Y.; Sato, A.; Shizuno, T.; Iida, Y.; Okada, Y.

10.1101/429399 — cell biology — Posted on 2018-09-27

229 Evaluating single-subject study methods for personal transcriptomic interpretations to advance precision medicine

Rachid Zaim, S.; Kenost, C.; Berghout, J.; Zhang, H. H.; Lussier, Y. A.

10.1101/428581 — bioinformatics — Posted on 2018-09-27

230 A novel rotifer-derived alkaloid paralyzes schistosome larvae and prevents infection

Gao, J.; Yang, N.; Lewis, F. A.; Yau, P.; Collins, J. J.; Sweedler, J. V.; Newmark, P. A.

10.1101/426999 — biochemistry — Posted on 2018-09-27

231 Antlions are sensitive to subnanometer amplitude vibrations carried by sand substrates

Martinez, V.; Nowbahari, E.; Sillam-Dusses, D.; Lorent, V.

10.1101/429209 — physiology — Posted on 2018-09-27

232 The neural dynamics of novel scene imagery

Barry, D. N.; Barnes, G. R.; Clark, I. A.; Maguire, E. A.

10.1101/429274 — neuroscience — Posted on 2018-09-27

233 Reduced-representation bisulfite sequencing finds novel epigenome-wide response to oil pollution in the foundation plant Spartina alterniflora

Alvarez, M.; Robertson, M.; van Gurp, T.; Wagemaker, N.; Giraud, D.; Ainouche, M.; Salmon, A.; Verhoeven, K.; Richards, C.

10.1101/426569 — ecology — Posted on 2018-09-27

234 Bet-hedging strategies in expanding populations

Villa Martin, P.; Munoz, M. A.; Pigolotti, S.

10.1101/429506 — ecology — Posted on 2018-09-27

235 A heterochromatic histone methyltransferase lowers nucleosome occupancy at euchromatic promoters

Chen, H.-M. M.; Sackton, T. B.; Mutlu, B.; Wang, J.; Keppler-Ross, S.; Levine, E.; Liu, T.; Mango, S. E.

10.1101/429191 — developmental biology — Posted on 2018-09-27

236 The nuclear RNAi factor, NRDE2, prevents the accumulation of DNA damage during mitosis in stressful growth conditions

Asuni, A.; Venkataramanan, S.; Suzuki, A.; Floor, S. N.; Goga, A.; L'Etoile, N.

10.1101/428250 — cell biology — Posted on 2018-09-27

237 A mathematical model of viral oncology as a instigator of immuno-oncology

Cassidy, T.; Humphries, A. R.

10.1101/429233 — systems biology — Posted on 2018-09-27

238 Computational Geometry for Modeling Neural Populations: from Visualization to Simulation

de Kamps, M.; Elle Lepperod, M.; Lai, Y. M.

10.1101/275412 — neuroscience — Posted on 2018-09-27

239 Reduced serotonin receptors and transporters in normal aging adults: a meta-analysis of PET and SPECT imaging studies

Karrer, T. M.; McLaughlin, C. L.; Guaglianone, C. P.; Samanez-Larkin, G. R.

10.1101/429266 — neuroscience — Posted on 2018-09-27

240 Origin and evolution of papillomavirus (onco)genes and genomes

Willemsen, A.; Bravo, I. G. G.

10.1101/428912 — evolutionary biology — Posted on 2018-09-27

241 Redundant and cryptic enhancer activities of the Drosophila yellow gene

Kalay, G.; Lachowiec, J.; Rosas, U.; Dome, M. R.; Wittkopp, P. J.

10.1101/419226 — evolutionary biology — Posted on 2018-09-27

242 Glucosinolates promote initial population establishment of feral oilseed rape

Hesse, E.; Hodgson, D.; de Jong, T.

10.1101/429290 — ecology — Posted on 2018-09-27

243 Invasive aliens threatened with native extinction: examining best practice for species translocations under climate change

Egan, P. A.; Bourke, D.; Thuiller, W.; Baudraz, M. E. A.; Georges, D.; Renaud, J.; Stout, J. C.

10.1101/429084 — ecology — Posted on 2018-09-27

244 Liposome-based transfection enhances RNAi and CRISPR-mediated mutagenesis in non-model nematode systems

Adams, S.; Pathak, P.; Shao, H.; Lok, J. B.; Pires da Silva, A.

10.1101/429126 — developmental biology — Posted on 2018-09-27

245 Wound-induced polyploidization is driven by Myc and supports tissue repair in the presence of DNA damage

Grendler, J.; Lowgren, S.; Mills, M.; Losick, V. P.

10.1101/427419 — cell biology — Posted on 2018-09-27

246 Towards the quantitative characterization of piglets’ robustness to weaning: A modelling approach

Revilla, M.; Friggens, N. C.; Broudiscou, L. P.; Lemonnier, G.; Blanc, F.; Ravon, L.; Mercat, M.-J.; Billon, Y.; Rogel-Gaillard, C.; Le Floch, N.; Estelle, J.; Munoz-Tamayo, R.

10.1101/428920 — systems biology — Posted on 2018-09-27

247 Network stress test reveals novel drug potentiators in Mycobacterium tuberculosis

Ma, S.; Morrison, R.; Hobbs, S. J.; Farrow-Johnson, J.; Rustad, T. R.; Sherman, D. R.

10.1101/429373 — systems biology — Posted on 2018-09-27

248 Dopaminergic genes are associated with both directed and random exploration

Gershman, S.; Greshake Tzovaras, B.

10.1101/357251 — neuroscience — Posted on 2018-09-27

249 Coping with stress: morphological changes in response to environmental stimuli in a fungal plant pathogen

Francisco, C. S.; Ma, X.; Zwyssig, M. M.; McDonald, B. A.; Palma-Guerrero, J.

10.1101/372078 — microbiology — Posted on 2018-09-27

250 Reactive oxygen species are major contributors to SOS-mediated mutagenesis induced by fluoroquinolones

Rodriguez- Rosado, A.; Valencia, E. Y.; Rodriguez- Rojas, A.; Costas- Romero, C.; Galhardo, R. S.; Blazquez Gomez, J.; Rodriguez- Beltran, J.

10.1101/428961 — microbiology — Posted on 2018-09-27

251 Improved consistency in estimates of conditional false discovery rates increases power relative to both existing methods and parametric estimators

Liley, J.; Wallace, C.

10.1101/414326 — genomics — Posted on 2018-09-27

252 Fast genetic mapping of complex traits in C. elegans using millions of individuals in bulk

Burga, A.; Ben-David, E.; Lemus Vergara, T.; Boocock, J.; Kruglyak, L.

10.1101/428870 — genetics — Posted on 2018-09-27

253 Residual Structure of Unfolded Ubiquitin as Revealed by Hydrogen/Deuterium-Exchange 2D NMR

Chandak, M. S.; Nakamura, T.; Yagi-Utsumi, M.; Yamaguchi, T.; Kato, K.; Kuwajima, K.

10.1101/429167 — biophysics — Posted on 2018-09-27

254 Emergent oscillations in dense adaptive cell populations

Wang, S.-W.; Tang, L.-H.

10.1101/421586 — biophysics — Posted on 2018-09-27

255 Allosteric network in Ube2T drives specificity for RING E3 catalysed ubiquitin signals.

Chaugule, V. K.; Arkinson, C.; Toth, R.; Walden, H.

10.1101/429076 — biochemistry — Posted on 2018-09-27

256 Alternative splicing of bicistronic MOCS1 defines a novel mitochondrial protein maturation mechanism

Mayr, S. J.; Roeper, J.; Schwarz, G.

10.1101/429183 — biochemistry — Posted on 2018-09-27

257 PlotsOfData - a web app for visualizing data together with its summaries

Postma, M.; Goedhart, J.

10.1101/426767 — scientific communication and education — Posted on 2018-09-27

258 Movement Dynamics of Divisome and Penicillin-Binding Proteins (PBPs) in Cells of Streptococcus pneumoniae

Perez, A. J.; Cesbron, Y.; Shaw, S. L.; Bazan Villicana, J.; Tsui, H.-C. T.; Boersma, M. J.; Ye, Z. A.; Tovpeko, Y.; Dekker, C.; Holden, S.; Winkler, M. E.

10.1101/429217 — microbiology — Posted on 2018-09-27

259 For comparing phylogenetic diversity among communities, go ahead and use synthesis phylogenies

Li, D.; Trotta, L.; Marx, H. E.; Allen, J. M.; Sun, M.; Soltis, D. E.; Soltis, P. S.; Guralnick, R. P.; Baiser, B. H.

10.1101/370353 — ecology — Posted on 2018-09-27

260 Invadopodia degrade ECM in the G1 phase of the cell cycle

Bayarmagnai, B.; Perrin, L.; Esmaeili Pourfarhangi, K.; Gligorijevic, B.

10.1101/412916 — cancer biology — Posted on 2018-09-27

261 The Project MinE databrowser: bringing large-scale whole-genome sequencing in ALS to researchers and the public

van der Spek, R. A. A.; van Rheenen, W.; Pulit, S. L.; Kenna, K. P.; McLaughlin, R. L.; Moisse, M.; Dekker, A. M.; Tazelaar, G. H. P.; Kenna, B.; van Eijk, K. R.; van Vugt, J. J. F. A.; van Doormaal, P. T. C.; Middelkoop, B.; Schellevis, R. D.; Brands, W. J.; Byrne, R.; Cooper-Knock, J.; Al Khleifat, A.; Campos, Y.; Vural, A.; Glass, J. D.; Iacoangeli, A.; Shatunov, A.; Sproviero, W.; Kavak, E.; Seker, T.; Akcimen, F.; Kocoglu, C.; Tunca, C.; Ticozzi, N.; Kooyman, M.; Redondo, A. G.; Blair, I.; Wray, N. R.; Kiernan, M. C.; de Carvalho, M.; Drory, V.; Gotkine, M.; Andersen, P. M.; Corcia, P.; C

10.1101/377911 — genomics — Posted on 2018-09-27

262 Disentangling unspecific and specific transgenerational immune priming components inhost-parasite interactions

Ben-Ami, F.; Orlic, C.; Regoes, R. R.

10.1101/429498 — ecology — Posted on 2018-09-27

263 A Bayesian model of acquisition and clearance of bacterial colonization incorporating within-host variation

Järvenpää, M.; Sater, M.; Lagoudas, G.; Blainey, P.; Miller, L.; McKinnell, J.; Huang, S.; Grad, Y.; Marttinen, P.

10.1101/429464 — bioinformatics — Posted on 2018-09-27

264 FlashPack: Fast and simple preparation of ultra-high performance capillary columns for LC-MS

Kovalchuk, S. I.; Rogowska-Wrzesinska, A.; Jensen, O. N.

10.1101/426676 — biochemistry — Posted on 2018-09-27

265 Demography and behaviour of polygyne nests of the supercolonial ant Cataglyphis niger: Does kinship matter?

Reiner Brodetzki, T.; Brodetzki, G.; Feinerman, O.; Hefetz, A.

10.1101/392522 — animal behavior and cognition — Posted on 2018-09-27

266 Quantitative modelling explains distinct STAT1 and STAT3 activation dynamics in response to both IFNγ and IL-10 stimuli and predicts emergence of reciprocal signalling at the level of single cells

Sarma, U.; Maiti, M.; Bhadange, S.; Nair, A.; Srivastava, A.; Saha, B.; Mukherjee, D.

10.1101/425868 — systems biology — Posted on 2018-09-27

267 Assessment Of Genetic Structure Of The Endangered Forest Species Boswellia Serrata Roxb. Population In Central India

Vaishnav, V.; Mahesh, S.; Kumar, P.

10.1101/412874 — plant biology — Posted on 2018-09-27

268 When do shifts in trait dynamics precede population declines?

Baruah, G.; Clements, C. F.; Guillaume, F.; Ozgul, A.

10.1101/424671 — ecology — Posted on 2018-09-27

269 Multiple statistical signatures of human confidence

Rausch, M.; Zehetleitner, M.

10.1101/426635 — neuroscience — Posted on 2018-09-27

270 Chromatin changes in Anopheles gambiae induced by a Plasmodium falciparum infection

Ruiz, J. L.; Yerbanga, R. S.; Lefevre, T.; Ouedraogo, J. B.; Corces, V. G.; Gomez-Diaz, E.

10.1101/418442 — molecular biology — Posted on 2018-09-27

271 Accurate error control in high dimensional association testing using conditional false discovery rates

Liley, J.; Wallace, C.

10.1101/414318 — genomics — Posted on 2018-09-27

272 Evolutionary rate covariation analysis of E-cadherin identifies Raskol as regulator of cell adhesion and actin dynamics in Drosophila

Raza, Q.; Choi, J. Y.; Li, Y.; O'Dowd, R. M.; Watkins, S. C.; Hong, Y.; Clark, N. L.; Kwiatkowski, A. V.

10.1101/429472 — genetics — Posted on 2018-09-27

273 MdMYB3 helps regulate anthocyanin accumulation in apple calli under moderately acidic conditions

Wang, Y.; Wang, Y.; Sun, J.; Qiu, Y.; Zhang, Z.; Feng, S.; Chen, X.

10.1101/429456 — molecular biology — Posted on 2018-09-27

274 The Escherichia coli O157:H7 Carbon Starvation-Inducible Lipoprotein Slp Contributes to Initial Adherence In Vitro via the Human Polymeric Immunoglobulin Receptor

Fedorchuk, C.; Kudva, I. T.; Kariyawasam, S.

10.1101/429480 — microbiology — Posted on 2018-09-27

275 Feeding location of aphid prey affects life history traits of a native predator

Cibils-Stewart, X.; Nechols, J.; Giles, K.; McCornack, B. P.

10.1101/429415 — ecology — Posted on 2018-09-27

276 Cryopreservation and transplantation of common carp spermatogonia

Franek, R.; Marinovic, Z.; Lujic, J.; Urbanyi, B.; Fucikova, M.; Kaspar, V.; Psenicka, M.; Horvath, A.

10.1101/429449 — bioengineering — Posted on 2018-09-27

277 Trait-based approach to bacterial growth efficiency

Muscarella, M. E.; Lennon, J. T.

10.1101/427161 — microbiology — Posted on 2018-09-27

278 A high-throughput whole cell screen to identify inhibitors of Mycobacterium tuberculosis

Ollinger, J.; Kumar, A.; Roberts, D. M.; Bailey, M. A.; Casey, A.; Parish, T.

10.1101/429423 — microbiology — Posted on 2018-09-27

279 Genome wide association with quantitative resistance phenotypes in Mycobacterium tuberculosis reveals novel resistance genes and regulatory regions

Farhat, M. R.; Freschi, L.; Calderon, R.; Ioerger, T.; Snyder, M.; Meehan, C. J.; de Jong, B.; Rigouts, L.; Sloutsky, A.; Kaur, D.; Sunyaev, S.; van Soolingen, D.; Shendure, J.; Sacchettini, J.; Murray, M.

10.1101/429159 — evolutionary biology — Posted on 2018-09-27

280 Segmenting accelerometer data from daily life with unsupervised machine learning

van Kuppevelt, D. E.; Heywood, J.; Hamer, M.; Sabia, S.; Fitzsimons, E.; van Hees, V.

10.1101/263046 — epidemiology — Posted on 2018-09-27

281 Further Investigation of Mitochondrial Biogenesis and Gene Expression of Key Regulators in Ascites- Susceptible and Ascites-Resistant Broiler Research Lines

Al-Zahrani, K.; Licknack, T.; Watson, D.; Anthony, N. B.; Rhoads, D. D.

10.1101/429431 — developmental biology — Posted on 2018-09-27

282 The High-throughput WAFFL System for Treating and Monitoring Individual Drosophila melanogaster Adults

Jaime, M. D. L. A.; Karott, S.; Salem, G. H.; Krynitsky, J.; Garmendia, M.; Anderson, S.; Harbison, S.; Pohida, T. J.; Oliver, B.

10.1101/428037 — pharmacology and toxicology — Posted on 2018-09-27

283 Host contact dynamics shapes richness and dominance of pathogen strains

Pinotti, F.; Fleury, E.; Guillemot, D.; Böelle, P.-Y.; Poletto, C.

10.1101/428185 — epidemiology — Posted on 2018-09-27

284 The ecomorphology of southern African rodent incisors: Potential applications to the hominin fossil record

Paine, O.; Leichliter, J. N.; Avenant, N.; Codron, D.; Lawrence, A.; Sponheimer, M.

10.1101/429365 — paleontology — Posted on 2018-09-27

285 Natural enemies of armored scales (Hemiptera: Diaspididae) and soft scales (Hemiptera: Coccoidae) in Chile: molecular and morphological identification

Amouroux, P.; Crochard, D.; Correa, M.; Groussier, G.; Kreiter, P.; Roman, C.; Guerrieri, E.; Garonna, A.; Malausa, T.; Zaviezo, T.

10.1101/429357 — molecular biology — Posted on 2018-09-27

286 Instability in 18S and 5.8S rDNA copy numbers and 18S:5.8S ratios in longitudinally-collected human DNA samples detected by monochrome multiplex qPCR

Ligerman, C. B.; Baird, L.; Leppert, M. F.; Cawthon, R. M.

10.1101/361840 — genomics — Posted on 2018-09-27

287 A high resolution view of adaptive events

Mei, H.; Arbeithuber, B.; Cremoina, M.; DeGeorgio, M.; Nekrutenko, A.

10.1101/429175 — evolutionary biology — Posted on 2018-09-27

288 Integrating co-expression networks with GWAS to prioritize causal genes in maize

Schaefer, R. J.; Michno, J.-M.; Jeffers, J.; Hoekenga, O.; Dilkes, B.; Baxter, I.; Myers, C.

10.1101/221655 — systems biology — Posted on 2018-09-27

289 A unified framework for unconstrained and constrained ordination of microbiome read count data

Hawinkel, S.; Kerckhof, F.-M.; Bijnens, L.; Thas, O.

10.1101/429340 — microbiology — Posted on 2018-09-27

290 GRID-seq assisted computational prediction of transcription factor binding motifs using multivariate mahalanobis distance analysis reveals that RNA-chromosomal interaction may act as a proxy indicator of true positive transcriptional activity.

Veldsman, W. P.

10.1101/429332 — bioinformatics — Posted on 2018-09-27

291 Macrophages protect against loss of adipose tissue during cancer cachexia

Erdem, M.; Moeckel, D.; Jumpertz, S.; John, C.; Fragoulis, A.; Rudolph, I.; Wulfmeier, J.; Springer, J.; Horn, H.; Koch, M.; Lurje, G.; Lammers, T.; van der Kroft, G.; Gremse, F.; Cramer, T.

10.1101/427963 — cancer biology — Posted on 2018-09-27

292 The human pathogenic bacterium Shigella proliferates in Arabidopsis plants through type III effector-mediated immune suppression

Jo, S. H.; Lee, J.; Kim, D. W.; Lee, D. H.; Ryu, C. M.; Park, J. M.

10.1101/292201 — microbiology — Posted on 2018-09-27

293 csuWGCNA: a combination of signed and unsigned WGCNA to capture negative correlations

Dai, R.; Xia, Y.; Liu, C.; Chen, C.

10.1101/288225 — bioinformatics — Posted on 2018-09-27

294 Astrocytes Regulate the Development and Maturation of Retinal Ganglion Cells Derived from Human Pluripotent Stem Cells

Langer, K. B.; Vij, R.; Ohlemacher, S. K.; Sridhar, A.; Fligor, C. M.; Feder, E. M.; Edler, M. C.; Baucum, A. J.; Cummins, T. M.; Meyer, J. S.

10.1101/428631 — neuroscience — Posted on 2018-09-27

295 fluxweb: a R package to easily estimate energy fluxes in food webs

Gauzens, B.; Barnes, A.; Giling, D.; Hines, J.; Jochum, M.; Lefcheck, J. S.; Rosenbaum, B.; Wang, S.; Brose, U.

10.1101/229450 — ecology — Posted on 2018-09-27

296 Imaging of red-shifted photons from bioluminescent tumours using fluorescence by unbound excitation from luminescence

Sonego, F.; Bouccara, S.; Pons, T.; Lequeux, N.; Danckaert, A.; Tinevez, J.-Y.; Alam, I.; Shorte, S. L.; Tournebize, R.

10.1101/428771 — bioengineering — Posted on 2018-09-27

297 Determination of sex of sacrum in adult Macaca mulatta

Wang, Y.-M.; Han, X.; Zhao, X.

10.1101/428748 — animal behavior and cognition — Posted on 2018-09-27

298 MiR-146a-dependent regulation of CD24/AKT/β-catenin axis drives stem cell phenotype in oral cancer

Roychoudhury, S.; Ghuwalewala, S.; Ghatak, D.; Das, S.; Das, P.; Butti, R.; Gorain, M.; Kundu, G. C.

10.1101/429068 — cancer biology — Posted on 2018-09-27

299 On the optimal design of metabolic RNA labeling experiments.

Uvarovskii, A.; Naarmann-de Vries, I.; Dieterich, C.

10.1101/428862 — bioinformatics — Posted on 2018-09-27

300 Inflammatory and JAK-STAT Pathways as Shared Molecular Targets for ANCA-Associated Vasculitis and Nephrotic Syndrome

Eddy, S.; Nair, V.; Mariani, L. H.; Eichinger, F. E.; Hartman, J.; Huang, H.; Parikh, H.; Taroni, J. N.; Lindenmeyer, M. T.; Ju, W.; Greene, C. S.; Grayson, P. C.; Godfrey, B.; Cohen, C. D.; Sampson, M. G.; Lafayette, R. A.; Nephrotic Syndrome Study Network (NEPTUNE), ; European Renal cDNA Bank - Else Kröner-Fresenius Biopsy Bank (ERCB), ; Vasculitis Clinical Research Consortium (VCRC), ; Krischer, J.; Merkel, P. A.; Kretzler, M.

10.1101/427898 — systems biology — Posted on 2018-09-27

301 A florigen paralog is required for short-day vernalization in a pooid grass

Woods, D.; Dong, Y.; Bouche, F.; Bednarek, R.; Rowe, M.; Ream, T.; Amasino, R.

10.1101/428995 — plant biology — Posted on 2018-09-27

302 From space to time: Spatial inhomogeneities lead to the emergence of spatio-temporal activity sequences in spiking neuronal networks

Spreizer, S.; Aertsen, A.; Kumar, A.

10.1101/428649 — neuroscience — Posted on 2018-09-27

303 Modular dynamics of DNA co-methylation networks exposes the functional organization of colon cancer cells’ genome

Mallona, I.; Ausso, S.; Diez-Villanueva, A.; Moreno, V.; Peinado, M. A.

10.1101/428730 — genomics — Posted on 2018-09-27

304 Enhanced in vivo-imaging in fish by optimized anaesthesia, fluorescent protein selection and removal of pigmentation

Lischik, C. Q.; Adelmann, L.; Wittbrodt, J.

10.1101/428763 — developmental biology — Posted on 2018-09-27

305 CRISPR-interference based modulation of mobile genetic elements in bacteria

Nyerges, A.; Balint, B.; Cseklye, J.; Nagy, I.; Pal, C.; Feher, T.

10.1101/428029 — synthetic biology — Posted on 2018-09-27

306 In vivo recombination of Saccharomyces eubayanus maltose-transporter genes yields a chimeric transporter that enables maltotriose fermentation

Brouwers, N.; Gorter de Vries, A. R.; van den Broek, M.; Weening, S. M.; Elink Schuurman, T. D.; Kuijpers, N. G. A.; Pronk, J. T.; Daran, J.-M. G.

10.1101/428839 — evolutionary biology — Posted on 2018-09-27

307 Characterization of the role of several COPI complex isoforms during the early acceptance of compatible pollen grains in Arabidopsis thaliana.

Cabada Gomez, D. A.; Chavez, M. I.; Indriolo, E.

10.1101/427534 — plant biology — Posted on 2018-09-27

308 DNA replication-mediated error correction of ectopic CENP-A deposition maintains centromere identity

Nechemia-Arbely, Y.; H. Miga, K.; Shoshani, O.; Aslanian, A.; A. McMahon, M.; Lee, A. Y.; Fachinetti, D.; R. Yates, J.; Ren, B.; Cleveland, D.

10.1101/428557 — cell biology — Posted on 2018-09-27

309 The bacterial DNA binding protein MatP involved in linking the nucleoid terminal domain to the divisome at midcell interacts with lipid membranes

Monterroso, B.; Zorrilla, S.; Sobrinos-Sanguino, M.; Robles-Ramos, M. A.; Alfonso, C.; Söderström, B.; Meiresonne, N. Y.; Verheul, J.; den Blaauwen, T.; Rivas, G.

10.1101/428714 — biochemistry — Posted on 2018-09-27

310 Comparative efficacy and acceptability of non-surgical brain stimulation for the acute treatment of adult major depressive episodes: A systematic review and network meta-analysis of 113 randomised clinical trials

Mutz, J.; Vipulananthan, V.; Carter, B.; Hurlemann, R.; Fu, C. H. Y.; Young, A. H.

10.1101/426866 — neuroscience — Posted on 2018-09-27

311 The bacterial chromatin protein HupA can remodel DNA and associates with the nucleoid in Clostridium difficile

Oliveira Paiva, A. M.; Friggen, A. H.; Qin, L.; Douwes, R.; Dame, R. T.; Smits, W. K.

10.1101/426809 — microbiology — Posted on 2018-09-27

312 Modeling RNA-binding protein specificity in vivo by precisely registering protein-RNA crosslink sites

Feng, H.; Bao, S.; Weyn-Vanhentenryck, S. M.; Khan, A.; Wong, J.; Shah, A.; Flynn, E. D.; Zhang, C.

10.1101/428615 — molecular biology — Posted on 2018-09-27

313 Asparagine availability is an essential limiting factor for poxvirus protein synthesis

Pant, A.; Cao, S.; Yang, Z.

10.1101/427203 — microbiology — Posted on 2018-09-27

314 Whole genome analysis of ExPEC ST73 from a single hospital over a 2-year period identified different circulating clonal groups

Bogema, D.; McKinnon, J.; Liu, M. Y.; Hitchick, N.; Miller, N.; Venturini, C.; Iredell, J.; Darling, A. E.; Roy Chowdury, P.; Djordjevic, S.

10.1101/428599 — genomics — Posted on 2018-09-27

315 Architectural Principles for Characterizing the Performance of Sequestration Feedback Networks

Olsman, N.; Xiao, F.; Doyle, J. C.

10.1101/428300 — synthetic biology — Posted on 2018-09-27

316 Combination of Dynamic Turbidimetry and Tube Agglutination to Identify Procoagulant Genes by Transposon Mutagenesis in Staphylococcus aureus

Luo, D.; Chen, Q.; Jiang, B.; Lin, R. S.; Peng, F. L.; Zeng, B. L.; Hu, M. X.; Chen, S. K.

10.1101/426783 — microbiology — Posted on 2018-09-27

317 Multiple statistical signatures of human confidence

Rausch, M.; Zehetleitner, M.

10.1101/426635 — neuroscience — Posted on 2018-09-27

318 Whole genome bisulfite sequencing of Down syndrome brain reveals regional DNA hypermethylation and novel disease insights

Laufer, B. I.; Hwang, H.; Vogel Ciernia, A.; Mordaunt, C. E.; LaSalle, J. M.

10.1101/428482 — genomics — Posted on 2018-09-27

319 Interleukin-6 Receptor Signalling and Abdominal Aortic Aneurysm Growth Rates

Paige, E.; Clement, M.; Lareyre, F.; Sweeting, M.; Raffort, J.; Grenier, C.; Finigan, A.; Harrison, J.; Peters, J. E.; Sun, B. B.; Butterworth, A. S.; Harrison, S. C.; Bown, M. J.; Lindholt, J. S.; Badger, S. A.; Kullo, I. J.; Norman, P. E.; Scott, D. J. A.; Bailey, M. A.; Rose-John, S.; Danesh, J.; Freitag, D. F.; Paul, D. S.; Mallat, Z.

10.1101/428516 — genetics — Posted on 2018-09-27

320 Dnmt1 has an essential function despite the absence of CpG DNA methylation in the red flour beetle Tribolium castaneum

Schulz, N. K. E.; Wagner, C. I.; Ebeling, J.; Raddatz, G.; Diddens-de Buhr, M. F.; Lyko, F.; Kurtz, J.

10.1101/426890 — evolutionary biology — Posted on 2018-09-27

321 Novel Comparison of Evaluation Metrics for Gene Ontology Classifiers Reveals Drastic Performance Differences

Plyusnin, I.; Holm, L.; Törönen, P.

10.1101/427096 — bioinformatics — Posted on 2018-09-27

322 Multicenter validation of a machine learning algorithm for 48 hour all-cause mortality prediction

Mohamadlou, H.; Panchavati, S.; Calvert, J.; Lynn-Palevsky, A.; Barton, C.; Fletcher, G.; Shieh, L.; Stark, P.; Chettipally, U.; Shimabukuro, D.; Feldman, M.; Das, R.

10.1101/427054 — bioinformatics — Posted on 2018-09-27

323 Model Classification for Uncertainty Reduction in Biochemical Kinetic Models

Miskovic, L.; Beal, J.; Moret, M.; Hatzimanikatis, V.

10.1101/427716 — systems biology — Posted on 2018-09-27

324 The microbial basis of impaired wound healing: differential roles for pathogens, \"bystanders\", and strain-level diversification in clinical outcomes

Kalan, L.; Meisel, J. S.; Loesche, M. A.; Horwinski, J.; Soaita, I.; Chen, X.; Gardner, S. E.; Grice, E. A.

10.1101/427567 — genomics — Posted on 2018-09-27

325 Adaptive genomic variation associated with environmental gradients along a latitudinal cline in Rana temporaria

Jansen van Rensburg, A.; Cortazar-Chinarro, M.; Laurila, A.; Van Buskirk, J.

10.1101/427872 — evolutionary biology — Posted on 2018-09-27

326 ICTD: Inference of cell types and deconvolution -- a next-generation deconvolution method for accurate assess cell population and activities in tumor microenvironment.

Chang, W.; Wan, C.; Zhang, Y.; So, K.; Richardson, B.; Sun, Y.; Zhang, X.; Huang, K.; Zhang, A.; Lu, X.; Cao, S.; Zhang, C.

10.1101/426593 — bioinformatics — Posted on 2018-09-27

327 Proteomics of natural bacterial isolates powered by deep learning-based de novo identification.

Lee, J.-Y.; Mitchell, H. D.; Burnet, M. C.; Jenson, S. C.; Merkley, E. D.; Shukla, A. K.; Nakayasu, E. S.; Payne, S.

10.1101/428334 — bioinformatics — Posted on 2018-09-27

328 Elimination of peripheral auditory pathway activation does not affect motor responses from ultrasound neuromodulation

Mohammadjavadi, M.; Ye, P. P.; Xia, A.; Brown, J.; Popelka, G.; Butts Pauly, K.

10.1101/428342 — neuroscience — Posted on 2018-09-27

329 High-Throughput ChIPmentation: freely scalable, single day ChIPseq data generation from very low cell-numbers

Gustafsson, C.; De Paepe, A.; Schmidl, C.; Mansson, R.

10.1101/426957 — molecular biology — Posted on 2018-09-27

330 Promoter activity of ORF-less gene cassettes isolated from the oral metagenome

Tansirichaiya, S.; Mullany, P.; Roberts, A. P.

10.1101/427781 — microbiology — Posted on 2018-09-27

331 Twenty-four hour face mask sampling in pulmonary tuberculosis reveals three distinct patterns of bacterial aerosol production dissociated from conventional markers of transmission risk.

Williams, C. M.; Abdulwhhab, M.; Birring, S. S.; de Kock, E.; Garton, N. J.; Stoltz, A.; Haldar, P.; Barer, M. R.

10.1101/426825 — microbiology — Posted on 2018-09-27

332 Antibiotic-induced decreases in the levels of microbial-derived short-chain fatty acids promote gastrointestinal colonization of Candida albicans

Thangamani, S.; Guinan, J.; Wang, S.; Yadav, H.

10.1101/428474 — microbiology — Posted on 2018-09-27

333 Trait-based approach to bacterial growth efficiency

Muscarella, M. E.; Lennon, J. T.

10.1101/427161 — microbiology — Posted on 2018-09-27

334 Atlas-CNV: a validated approach to call Single-Exon CNVs in the eMERGESeq gene panel

Chiang, T.; Liu, X.; Wu, T.-J.; Hu, J.; Sedlazeck, F. J.; White, S.; Schaid, D.; de Andrade, M.; Jarvik, G. P.; Crosslin, D.; Stanaway, I.; Carrell, D. S.; Connolly, J. J.; Hakonarson, H.; Groopman, E. E.; Gharavi, A. G.; Fedotov, A.; Bi, W.; Leduc, M. S.; Murdock, D. R.; Jiang, Y.; Meng, L.; Eng, C. M.; Wen, S.; Yang, Y.; Muzny, D. M.; Boerwinkle, E.; Salerno, W.; Venner, E.; Gibbs, R. A.

10.1101/422337 — genomics — Posted on 2018-09-27

335 Population-scale study of eRNA transcription reveals bipartite functional enhancer architecture

Kristjandsottir, K.; Kwak, Y.; Tippens, N. D.; Lis, J. T.; Kang, H. M.; Kwak, H.

10.1101/426908 — genomics — Posted on 2018-09-27

336 Tightly-linked antagonistic-effect loci underlie polygenic demographic variation in C. elegans

Bernstein, M. R.; Zdraljevic, S.; Andersen, E. C.; Rockman, M. V.

10.1101/428466 — genetics — Posted on 2018-09-27

337 BitterSweet: Building machine learning models for predicting the bitter and sweet taste of small molecules

Tuwani, R.; Wadhwa, S.; Bagler, G.

10.1101/426692 — bioinformatics — Posted on 2018-09-27

338 An introduction to MPEG-G, the new ISO standard for genomic information representation

Alberti, C.; Paridaens, T.; Voges, J.; Naro, D.; Ahmad, J. J.; Ravasi, M.; Renzi, D.; Zoia, G.; Ochoa, I.; Mattavelli, M.; Delgado, J.; Hernaez, M.

10.1101/426353 — bioinformatics — Posted on 2018-09-27

339 Towards Decoding the Metabolic Plasticity in Cancer: Coupling of Gene Regulation and Metabolic Pathways

Jia, D.; Lu, M.; Jung, K. H.; Park, J. H.; Yu, L.; Onuchic, J. N.; Kaipparettu, B. A.; Levine, H.

10.1101/428367 — systems biology — Posted on 2018-09-27

340 Mathematical Models for the Influence of Cytarabine on White Blood Cell Dynamics in Acute Myeloid Leukemia

Jost, F.; Schalk, E.; Rinke, K.; Fischer, T.; Sager, S.

10.1101/428326 — systems biology — Posted on 2018-09-27

341 Effects of a complex mixture of persistent organic pollutants (POPs) on steroidogenesis in H295R cells under 10 μM forskolin stimulation - results from a pilot study

Mohammed Ahmed, K. E.; Froysa, H. G.; Karlsen, O. A.; Zimmer, K. E.; Berntsen, H. F.; Verhaegen, S.; Ropstad, E.; Kellmann, R.; Goksoyr, A.

10.1101/426791 — pharmacology and toxicology — Posted on 2018-09-27

342 Alcoholism Gender Differences in Brain Responsivity to Emotional Stimuli

Sawyer, K.; Maleki, N.; Urban, T.; Marinkovic, K.; Karson, S.; Ruiz, S. M.; Harris, G. J.; Oscar-Berman, M.

10.1101/428565 — neuroscience — Posted on 2018-09-27

343 Lack of correlation between number of neurons and behavioral performance in Swiss mice

Neves, K.; Guercio, G. D.; Anjos-Travassos, Y.; Costa, S.; Perozzo, A.; Montezuma, K.; Herculano-Houzel, S.; Panizzutti, R.

10.1101/428607 — neuroscience — Posted on 2018-09-27

344 A FASII inhibitor prevents staphylococcal evasion of daptomycin by inhibiting phospholipid decoy production

Pee, C. J.; Pader, V.; Ledger, E. V.; Edwards, A.

10.1101/427989 — microbiology — Posted on 2018-09-27

345 The cell cycle regulator GpsB functions as cytosolic adaptor for multiple cell wall enzymes

Cleverley, R.; Rutter, Z.; Rismondo, J.; Corona, F.; Tsui, H.-C. T.; Alatawi, F.; Daniel, R.; Halbedel, S.; Massidda, O.; Winkler, M.; Lewis, R.

10.1101/427823 — microbiology — Posted on 2018-09-27

346 Cohort Profile: East London Genes & Health (ELGH), a community based population genomics and health study in people of British-Bangladeshi and -Pakistani heritage.

Finer, S.; Martin, H.; Hunt, K. A.; MacLaughlin, B.; Ashcroft, R.; Khan, A.; McCarthy, M. I.; Robson, J.; MacArthur, D.; Griffiths, C.; Wright, J.; Trembath, R. C.; van Heel, D.

10.1101/426163 — genomics — Posted on 2018-09-27

347 Genome-wide analyses supported by RNA-Seq reveal non-canonical splice sites in plant genomes

Pucker, B.; Brockington, S. F.

10.1101/428318 — genomics — Posted on 2018-09-27

348 iDEG: A single-subject method for assessing gene differential expression from two transcriptomes of an individual

Li, Q.; Rachid Zaim, S.; Aberasturi, D.; Berghout, J.; Li, H.; Vitali, F.; Kenost, C.; Zhang, H. H.; Lussier, Y. A.

10.1101/405332 — bioinformatics — Posted on 2018-09-27

349 AIM-SNPtag: a computationally efficient approach for developing ancestry-informative SNP panels

Zhao, S.; Shi, C.-M.; Ma, L.; Liu, Q.; Liu, Y.; Wu, F.; Chi, L.; Chen, H.

10.1101/427757 — bioinformatics — Posted on 2018-09-27

350 Pixel: a digital lab assistant to integrate biological data in multi-omics projects

Denecker, T.; Durand, W.; Maupetit, J.; Hebert, C.; Camadro, J.-M.; Poulain, P.; Lelandais, G.

10.1101/427724 — bioinformatics — Posted on 2018-09-27

351 RTHybrid: a standardized and open-source real-time software model library for experimental neuroscience

Amaducci, R.; Reyes-Sanchez, M.; Elices, I.; Rodriguez, F. B.; Varona, P.

10.1101/426643 — neuroscience — Posted on 2018-09-27

352 Thermophilic Lithotrophy and Phototrophy in an Intertidal, Iron-rich, Geothermal Spring

Ward, L. M.; Idei, A.; Nakagawa, M.; Ueno, Y.; Fischer, W. W.; McGlynn, S. E.

10.1101/428698 — microbiology — Posted on 2018-09-27

353 FLASH: A next-generation CRISPR diagnostic for multiplexed detection of antimicrobial resistance sequences

Quan, J.; Langelier, C.; Kuchta, A.; Batson, J.; Teyssier, N.; Lyden, A.; Caldera, S.; McGeever, A.; Dimitrov, B.; King, R.; Wilheim, J.; Murphy, M.; Pesce Ares, L.; Travisano, K. A.; Sit, R.; Amato, R.; Mumbengegwi, D. R.; Smith, J. L.; Bennett, A.; Gosling, R.; Mourani, P. M.; Calfee, C. S.; Neff, N. F.; Chow, E. D.; Kim, P. S.; Greenhouse, B.; DeRisi, J. L.; Crawford, E. D.

10.1101/426338 — microbiology — Posted on 2018-09-27

354 Chemical depletion of phagocytic immune cells reveals dual roles of mosquito hemocytes in Anopheles gambiae anti-Plasmodium immunity

Kwon, H. S.; Smith, R. C.

10.1101/422543 — immunology — Posted on 2018-09-27

355 Molecular Screening of Familial Hypercholesterolemia in the Icelandic Population

Kellogg, G.; Thorsson, B.; Cai, Y.; Wisotzkey, R.; Pollock, A.; Akana, M.; Fox, R.; Jansen, M.; Gudmundsson, E.; Patel, B.; Chang, C.; Jaremko, M.; Emilsson, V.; Gudnason, V.; Puig, O.

10.1101/425975 — genetics — Posted on 2018-09-27

356 A data-driven approach to reduce gender disparity in invited speaker programs at scientific meetings

Vallence, A.-M.; Hinder, M.; Fujiyama, H.

10.1101/426320 — scientific communication and education — Posted on 2018-09-27

357 Effects of BMP-2 dose and delivery of microvascular fragments on healing of bone defects with concomitant volumetric muscle loss

Ruehle, M.; Krishnan, L.; Vantucci, C. E.; Wang, Y.; Stevens, H. Y.; Roy, K.; Guldberg, R. E.; Willett, N. J.

10.1101/428359 — bioengineering — Posted on 2018-09-27

358 The mutational and phenotypic spectrum of TUBA1A-associated tubulinopathy

Hebebrand, M.; Hüffmeier, U.; Uebe, S.; Ekici, A. B.; Kraus, C.; Krumbiegel, M.; Reis, A.; Thiel, C. T.; Popp, B.

10.1101/427948 — genetics — Posted on 2018-09-26

359 Mechanisms of integrin αVβ5 clustering in flat clathrin lattices

Zuidema, A.; Wang, W.; Kreft, M.; te Molder, L.; Hoekman, L.; Bleijerveld, O. B.; Nahidiazar, L.; Janssen, H.; Sonnenberg, A.

10.1101/427112 — cell biology — Posted on 2018-09-26

360 The structural basis for forkhead box family specificity revealed by the crystal structure of human FOXN1 in complex with DNA

Newman, J. A.; Aitkenhead, H.; Gavard, A.; Rota, I. A.; Handel, A. E.; Hollander, G. A.; Gileadi, O.

10.1101/428011 — biochemistry — Posted on 2018-09-26

361 Structural basis for substrate gripping and translocation by the ClpB AAA+ disaggregase

Rizo, A. N.; Lin, J.; Gates, S. N.; Tse, E.; Bart, S. M.; Castellano, L. M.; DiMaio, F.; Shorter, J.; Southworth, D. R.

10.1101/428458 — biophysics — Posted on 2018-09-26

362 A well-controlled BioID design for endogenous bait proteins.

Vandemoortele, G.; De Sutter, D.; Moliere, A.; Pauwels, J.; Gevaert, K.; Eyckerman, S.

10.1101/427807 — biochemistry — Posted on 2018-09-26

363 FlashPack: Fast and simple preparation of ultra-high performance capillary columns for LC-MS

Kovalchuk, S.; Rogowska-Wrzesinska, A. I.; Jensen, O. N.

10.1101/426676 — biochemistry — Posted on 2018-09-26

364 PlotsOfData - a web app for visualizing data together with its summaries

Postma, M.; Goedhart, J.

10.1101/426767 — scientific communication and education — Posted on 2018-09-26

365 Niche maintenance of germline stem cells in C. elegans males

Crittenden, S. L.; Lee, C.; Mohanty, I.; Battula, S.; Kimble, J.

10.1101/428235 — developmental biology — Posted on 2018-09-26

366 Isolation of cancer stem cells by selection for miR-302 expressing cells

Rahimi, K.; Fuchtbauer, A. C.; Fathi, F.; Mowla, S. J.; Fuchtbauer, E.-M.

10.1101/427732 — cancer biology — Posted on 2018-09-26

367 Collective intercellular communication through ultra-fast hydrodynamic trigger waves

Mathijssen, A.; Culver, J.; Bhamla, M. S.; Prakash, M.

10.1101/428573 — biophysics — Posted on 2018-09-26

368 Naproxen impairs load-induced bone formation, reduces bone toughness, and delays stress fracture repair in mice

Park, J.; Fertala, A.; Tomlinson, R.

10.1101/427138 — bioengineering — Posted on 2018-09-26

369 Mitotic CDK promotes replisome disassembly, fork breakage, and complex DNA rearrangements

Deng, L.; Wu, R. A.; Kochenova, O. V.; Pellman, D. S.; Walter, J. C.

10.1101/428433 — biochemistry — Posted on 2018-09-26

370 Anticipated ITD statistics are built into human sound localization

Pavao, R.; Sussman, E.; Fischer, B.; Pena, J.

10.1101/303347 — neuroscience — Posted on 2018-09-26

371 Rapid CD4 cell loss is caused by specific CRF01_AE cluster with V3 signatures favoring CXCR4 usage

Song, H.; Ou, W.; Feng, Y.; Zhang, J.; Li, F.; Hu, J.; Peng, H.; Xing, H.; Ma, L.; Tan, Q.; Wu, B.; Shao, Y.

10.1101/427625 — microbiology — Posted on 2018-09-26

372 Intergenerational paternal effect of adult density in Drosophila melanogaster

Dasgupta, P.; Sarkar, S.; Das, A. A.; Verma, T.; Nandy, B.

10.1101/368613 — evolutionary biology — Posted on 2018-09-26

373 Molecular Classification and Comparative Taxonomics of Foveal and Peripheral Cells in Primate Retina

Peng, Y.-R.; Shekhar, K.; Yan, W.; Herrmann, D.; Sappington, A.; Bryman, G. S.; van Zyl, T.; Do, M. T. H.; Regev, A.; Sanes, J. R.

10.1101/428110 — neuroscience — Posted on 2018-09-26

374 LINEAR ANALYSIS OF HIPPOCAMPAL LFP: SLOW GAMMA VS HIGH THETA

Zhou, Y.; Sheremet, A.; Kennedy, J. P.; Maurer, A. P.

10.1101/428490 — neuroscience — Posted on 2018-09-26

375 V1 neurons encode the perceptual compensation of false torsion arising from Listings law

Khazali, M. F.; Thier, P.

10.1101/428441 — neuroscience — Posted on 2018-09-26

376 Setting the occasion for incentive motivation: implications for addiction

Fraser, K. M.; Janak, P. H.

10.1101/428409 — neuroscience — Posted on 2018-09-26

377 Retinal direction selectivity in the absence of asymmetric starburst amacrine cell responses

Hanson, L.; Sethuramanujam, S.; deRosenroll, G.; Awatramani, G. B.

10.1101/428532 — neuroscience — Posted on 2018-09-26

378 The Spectrum of Asynchronous Dynamics in Spiking Networks: A Theory for the Diversity of Non-Rhythmic Waking states in Neocortex

Zerlaut, Y.; Zucca, S.; Panzeri, S.; Fellin, T.

10.1101/427765 — neuroscience — Posted on 2018-09-26

379 Regional heterogeneity in gene expression, regulation and coherence in hippocampus and dorsolateral prefrontal cortex across development and in schizophrenia

Collado-Torres, L.; Burke, E. E.; Peterson, A.; Shin, J. H.; Straub, R. E.; Rajpurohi, A.; Semick, S. A.; Ulrich, W. S.; BrainSeq Consortium, ; Valencia, C.; Tao, R.; Deep-Soboslay, A.; Hyde, T. M.; Kleinman, J. E.; Weinberger, D. R.; Jaffe, A. E.

10.1101/426213 — neuroscience — Posted on 2018-09-26

380 The High-throughput WAFFL System for Treating and Monitoring Individual Drosophila melanogaster Adults

Jaime, M. D. L. A.; Karrot, S.; Salem, G. H.; Krynitsky, J.; Garmendia-Cedillos, M.; Anderson, S.; Harbison, S.; Pohida, T. J.; Oliver, B.

10.1101/428037 — pharmacology and toxicology — Posted on 2018-09-26

381 Microbial communities of the Mediterranean rocky coast: ecology and biotechnological potential

Tanner, K.; Molina-Menor, E.; Vidal-Verdu, A.; Pereto, J.; Porcar, M.

10.1101/428243 — microbiology — Posted on 2018-09-26

382 Physical illness, social disadvantage, and risky sexual behavior in adolescence and young adulthood

Alley, J.; Owen, R. Y.; Wawrzynski, S. E.; Lasrich, L.; Ahmmad, Z.; Utz, R.; Adkins, D. E.

10.1101/419010 — epidemiology — Posted on 2018-09-26

383 Leveraging the effects of chloroquine on resistant malaria parasites for combination therapies

Carey, M. A.; Untaroiu, A. M.; Guler, J. L.; Papin, J. A.

10.1101/428284 — microbiology — Posted on 2018-09-26

384 On simulating cold stunned turtle strandings on Cape Cod

Liu, X.; Manning, J.; Prescott, R.; Zou, H.; Faherty, M.

10.1101/418335 — ecology — Posted on 2018-09-26

385 Using Google Trends to Examine the Spatio-Temporal Incidence and Behavioral Patterns of Dengue Disease: A Case Study in Metropolitan Manila, Philippines

Ho, H.; Carvajal, T.; Bautista, J. R.; Capistrano, J. D.; Viacrusis, K.; Hernandez, L. F.; Watanabe, K.

10.1101/424630 — epidemiology — Posted on 2018-09-26

386 FAIRsharing, a cohesive community approach to the growth in standards, repositories and policies

Sansone, S.-A.; McQuilton, P.; Rocca-Serra, P.; Gonzalez-Beltran, A.; Izzo, M.; Lister, A.; Thurston, M.; Batista, D.; Granell, R.; Adekale, M.; Dauga, D.; Ganley, E.; Hodson, S.; Lawrence, R.; Khodiyar, V.; Tenenbaum, J.; Axton, J. M.; Ball, M.; Besson, S.; Bloom, T.; Bonazzi, V.; Jimenez, R.; Carr, D.; Chan, W. M.; Chung, C.; Clement-Stoneham, G.; Cousijn, H.; Dayalan, S.; Dumontier, M.; Dzale Yeumo, E.; Edmunds, S.; Everitt, N.; Fripp, D.; Goble, C.; Golebiewski, M.; Hall, N.; Hanisch, R.; Hucka, M.; Huerta, M.; Kenall, A.; Kiley, R.; Klenk, J.; Koureas, D.; Larkin, J.; Lemberger, T.; Lynch

10.1101/245183 — scientific communication and education — Posted on 2018-09-26

387 Automatic adaptation of model neurons and connections to build hybrid circuits with living networks

Reyes-Sanchez, M.; Amaducci, R.; Elices, I.; Rodriguez, F. B.; Varona, P.

10.1101/419622 — neuroscience — Posted on 2018-09-26

388 plyranges: A grammar of genomic data transformation

Lee, S.; Cook, D.; Lawrence, M.

10.1101/327841 — bioinformatics — Posted on 2018-09-26

389 Hard Limits And Performance Tradeoffs In A Class Of Sequestration Feedback Systems

Olsman, N.; Baetica, A.-A.; Xiao, F.; Leong, Y. P.; Doyle, J.; Murray, R.

10.1101/222042 — systems biology — Posted on 2018-09-26

390 Efficient generation of endogenous fluorescent reporters by Nested CRISPR in Caenorhabditis elegans

Vicencio, J.; Martinez-Fernandez, C.; Serrat, X.; Ceron, J.

10.1101/423970 — genetics — Posted on 2018-09-26

391 Quantification of Structural Brain Connectivityvia a Conductance Model

Frau-Pascual, A.; Fogarty, M.; Fischl, B.; Yendiki, A.; Aganj, I.; Alzheimer's Disease Neuroimaging Initiative,

10.1101/415489 — neuroscience — Posted on 2018-09-26

392 Human back-tracking behaviour is associated with suppression of default-mode region activity and enhanced dorsal anterior cingulate activity

Javadi, A. H.; Patai, E. Z.; Marin, E.; Margois, A.; Tan, H.-R.; Kumaran, D.; Nardini, M.; Penny, W.; Duzel, E.; Dayan, P.; Spiers, H. J.

10.1101/362319 — neuroscience — Posted on 2018-09-26

393 Differential expression and homotypic enrichment of a classic Cadherin directs tissue-level contractile asymmetry during neural tube closure

Hashimoto, H.; Munro, E. M.

10.1101/425165 — developmental biology — Posted on 2018-09-26

394 Thesaurus: quantifying phosphoprotein positional isomers

Searle, B. C.; Lawrence, R. T.; MacCoss, M. J.; Villen, J.

10.1101/421214 — bioinformatics — Posted on 2018-09-26

395 Overexpression of the vascular brassinosteroid receptor BRL3 confers drought resistance without penalizing plant growth

Fabregas, N.; Lozano-Elena, F.; Blasco-Escamez, D.; Tohge, T.; Martinez-Andujar, C.; Albacete, A.; Osorio, S.; Bustamante, M.; Riechmann, J. L.; Nomura, T.; Yokota, T.; Conesa, A.; Alfocea, F. P.; Fernie, A.; Cano-Delgado, A.

10.1101/318287 — plant biology — Posted on 2018-09-26

396 Detection of early stage pancreatic cancer using 5-hydroxymethylcytosine signatures in circulating cell free DNA

Collin, F.; Ning, Y.; Phillips, T.; McCarthy, E.; Scott, A.; Ellison, C.; Ku, C.-J.; Guler, G. D.; Chau, K.; Ashworth, A.; Quake, S. R.; Levy, S.

10.1101/422675 — cancer biology — Posted on 2018-09-26

397 Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing

Luo, R.; Sedlazeck, F. J.; Lam, T.-W.; Schatz, M.

10.1101/310458 — bioinformatics — Posted on 2018-09-26

398 Detection and Mitigation of Spurious Antisense RNA-seq Reads with RoSA

Mourao, K.; Schurch, N.; Lukoszek, R.; Froussios, K.; MacKinnon, K.; Duc, C.; Simpson, G.; Barton, G.

10.1101/425900 — bioinformatics — Posted on 2018-09-26

399 Uncertainty in contextual and kinematic cues jointly modulate motor resonance in primary motor cortex

Cretu, A.; Ruddy, K.; Germann, M.; Wenderoth, N.

10.1101/293977 — neuroscience — Posted on 2018-09-26

400 A neuromechanistic model for rhythmic beat generation

Bose, A.; Byrne, A.; Rinzel, J.

10.1101/397075 — neuroscience — Posted on 2018-09-26

401 Screening for insulin-independent pathways that modulate glucose homeostasis identifies androgen receptor antagonists

Mullapudi, S. T.; Helker, C. S.; Boezio, G. L.; Maischein, H.-M.; Sokol, A. M.; Graumann, J.; Guenther, S.; Matsuda, H.; Kubicek, S.; Yang, Y. H. C.; Stainier, D. Y.

10.1101/427831 — developmental biology — Posted on 2018-09-26

402 A fully automated spike sorting algorithm using t-distributed neighbor embedding and density based clustering

Nadian, M. H.; Karimimehr, S.; Doostmohammadi, J.; Ghazizadeh, A.; Lashgari, R.

10.1101/418913 — neuroscience — Posted on 2018-09-26

403 GenEpi: Gene-based Epistasis Discovery Using Machine Learning

Chang, Y.-C.; Wu, J.-T.; Hong, M.-Y.; Tung, Y.-A.; Hsieh, P.-H.; Yee, S. W.; Giacomini, K. M.; Oyang, Y.-J.; CHEN, C.-Y.; Alzheimer's Disease Neuroimaging Initiative,

10.1101/421719 — bioinformatics — Posted on 2018-09-26

404 Studies on effect of gold nanoparticles on Meloidogyne incognita and tomato plants growth and development

Thakur, R. K.; Shirkot, P.; Dhirta, B.

10.1101/428144 — plant biology — Posted on 2018-09-26

405 Mosaic Plasmids are Abundant and Unevenly Distributed Across Prokaryotic Taxa.

Pesesky, M. W.; Tilley, R.; Beck, D. A. C.

10.1101/428219 — microbiology — Posted on 2018-09-26

406 Fast Bayesian fine-mapping of 35 production, reproduction and body conformation traits with imputed sequences of 27K Holstein bulls

Jiang, J.; Cole, J. M.; Da, Y.; VanRaden, P. M.; Ma, L.

10.1101/428227 — genetics — Posted on 2018-09-26

407 Division of labour between PP2A-B56 isoforms during mitosis

Vallardi, G.; Allan, L. A.; Crozier, L.; Saurin, A. T.

10.1101/425579 — cell biology — Posted on 2018-09-26

408 Automated 3D Axonal Morphometry of White Matter

Abdollahzadeh, A.; Belevich, I.; Jokitalo, E.; Tohka, J.; Sierra, A.

10.1101/239228 — neuroscience — Posted on 2018-09-26

409 Molecular and clinical analysis of 27 German patients with Leber congenital amaurosis

Weisschuh, N.; Feldhaus, B.; Khan, M. I.; Cremers, F. P.; Wissinger, B.; Kohl, S.; Zobor, D.

10.1101/428177 — genetics — Posted on 2018-09-26

410 Host contact dynamics shapes richness and dominance of pathogen strains

Pinotti, F.; Fleury, E.; Guillemot, D.; Böelle, P.-Y.; Poletto, C.

10.1101/428185 — epidemiology — Posted on 2018-09-26

411 Characterizing Inpatient Medicine Resident Electronic Health Record Usage Patterns Using Event Log Data

Chen, J. H.; Wang, J. K.; Ouyang, D.; Hom, J.; Chi, J.

10.1101/428169 — epidemiology — Posted on 2018-09-26

412 Food collection behavior of Apis mellifera and Tetragonisca angustula bees in Brassica napus L. in response to different environmental covariates.

Camargo, S. C.; Garcia, R. C.; Escocard de Oliveira, N. T.; Vasconcelos, E. S.; Galhardo, D.; Stroher, S. M.; Hartleben, A. M.; Pires, B. G.; Pineros, G. P.; Diaz, D. G.; Ribeiro, R. J.; Radtke, T. H.; Santos, P. R.; Toledo, V. A.

10.1101/428128 — animal behavior and cognition — Posted on 2018-09-26

413 Optimising colour for camouflage and visibility: the effects of the environment and the observers visual system

Fennell, J.; Talas, L.; Baddeley, R.; Cuthill, I.; Scott-Samuel, N.

10.1101/428193 — animal behavior and cognition — Posted on 2018-09-26

414 Study on physicochemical properties and microbial diversity of flammulina velutipes residue during rapid fermentation

Wang, Y.; Shi, G.; Wang, P.

10.1101/428094 — plant biology — Posted on 2018-09-26

415 Microplastic-mediated transport of PCBs? A depuration study with Daphnia magna

Gerdes, Z.; Ogonowski, M.; Nybom, I.; Ek, C.; Adolfsson-Erici, M.; Barth, A.; Gorokhova, E.

10.1101/428151 — pharmacology and toxicology — Posted on 2018-09-26

416 Resumption of spermatogenesis in senescent goldfish Carassius auratus (Linnaeus, 1758) through spermatogonial cell therapy

Majhi, S. K.; Chowdhury, M.; Kumar, S.; Singh, R.; Mohindra, V.; Lal, K.

10.1101/428102 — developmental biology — Posted on 2018-09-26

417 Imaging human cortical responses to intraneural microstimulation using magnetoencephalography

O'Neill, G. C.; Watkins, R. H.; Ackerley, R.; Barratt, E. L.; Sengupta, A.; Asghar, M.; Sanchez, R. M.; Brookes, M. J.; Glover, P. M.; Wessberg, J.; Francis, S.

10.1101/427815 — neuroscience — Posted on 2018-09-26

418 Subcutaneous neurotrophin-3 infusion induces corticospinal neuroplasticity and improvements in dexterity and walking in elderly rats after large cortical stroke

Duricki, D.; Kakanos, S.; Haenzi, B.; Wayman, C.; Cash, D.; Moon, L.

10.1101/427864 — neuroscience — Posted on 2018-09-26

419 Discrimination of the hierarchical structure of cortical layers in 2-photon microscopy data by combined unsupervised and supervised machine learning

Li, D.; Zavaglia, M.; Wang, G.; Hu, Y.; Xie, H.; Werner, R.; Guan, J.-S.; Hilgetag, C. C.

10.1101/427955 — neuroscience — Posted on 2018-09-26

420 Metformin induces lipogenic differentiation in myofibroblasts to reverse mouse and human lung fibrosis

Kheirollahi, V.; Wasnick, R. M.; Biasin, V.; Vazquez-Armendariz, A. I.; Chu, X.; Moiseenko, A.; Weiss, A.; Wilhelm, J.; Zhang, J.-S.; Kwapiszewska, G.; Herold, S.; Schermuly, R. T.; Seeger, W.; Guenther, A.; Bellusci, S.; El Agha, E.

10.1101/401265 — cell biology — Posted on 2018-09-26

421 WNT1 Inducible Signaling Pathway Protein 1 (WISP1) Stimulates Melanoma Cell Invasion and Metastasis by Promoting Epithelial - Mesenchymal Transition (EMT)

Deng, W.; Fernandez, A.; McLaughlin, S. L.; Klinke, D. J.

10.1101/427088 — cancer biology — Posted on 2018-09-26

422 Using optically-pumped magnetometers to measure magnetoencephalographic signals in the human cerebellum

Lin, C.-H.; Tierney, T. M.; Holmes, N.; Boto, E.; Leggett, J.; Bestmann, S.; Bowtell, R.; Brookes, M. J.; Miall, R. C.; Barnes, G. R.

10.1101/425447 — neuroscience — Posted on 2018-09-26

423 The eukaryotic Initiation Factor 6 (eIF6) regulates ecdysone biosynthesis by modulating translation in Drosophila

Russo, A.; Gatti, G.; Alfieri, R.; Pesce, E.; Soanes, K.; Ricciardi, S.; Mancino, M.; Cheroni, C.; Vaccari, T.; Biffo, S.; Calamita, P.

10.1101/201558 — developmental biology — Posted on 2018-09-26

424 Slow transcriptional elongation causes embryonic lethality and perturbs kinetic coupling of long neural genes

Maslon, M. M.; Braunchsweig, U.; Aitken, S.; Wilson, A. R.; Kilanowski, F.; Hunter, C.; Blencowe, B. J.; Kornblihtt, A. R.; Adams, I. R.; Caceres, J. F.

10.1101/426577 — molecular biology — Posted on 2018-09-26

425 Rapid and stable microbial community assembly in the headwaters of third-order stream

Teachey, M. E.; McDonald, J. M.; Ottesen, E. A.

10.1101/426460 — microbiology — Posted on 2018-09-26

426 Royalactin induces copious longevity via increased translation and proteasome activity in C. elegans.

Detienne, G.; Van de Walle, P.; De Haes, W.; Cockx, B.; Braeckman, B. P.; Schoofs, L.; Temmerman, L.

10.1101/421818 — molecular biology — Posted on 2018-09-26

427 Commensal gut bacteria convert the immunosuppressant tacrolimus to less potent metabolites

Guo, Y.; Crnkovic, C. M.; Won, K.-J.; Yang, X.; Lee, J. R.; Orjala, J.; Lee, H.; Jeong, H.

10.1101/426197 — pharmacology and toxicology — Posted on 2018-09-26

428 Cancer as a tissue anomaly: classifying tumor transcriptomes based only on healthy data

Quinn, T.; Nguyen, T.; Lee, S.; Venkatesh, S.

10.1101/426395 — bioinformatics — Posted on 2018-09-26

429 Automated, predictive, and interpretable inference of C. elegans escape dynamics

Daniels, B. C.; Ryu, W. S.; Nemenman, I.

10.1101/426387 — systems biology — Posted on 2018-09-26

430 The ecological drivers of variation in global language diversity

Hua, X.; Greenhill, S. J.; Cardillo, M.; Schneemann, H.; Bromham, L.

10.1101/426502 — ecology — Posted on 2018-09-26

431 A multi-omics data simulator for complex disease studies and its application to evaluate multi-omics data analysis methods for disease classification

Chung, R.-H.; Kang, C.-Y.

10.1101/426510 — bioinformatics — Posted on 2018-09-26

432 SWI/SNF coordinates transcriptional activation through Rpd3-mediated histone hypoacetylation during quiescence entry

Spain, M. M.; Braceros, K. C. A.; Tsukiyama, T.

10.1101/426288 — molecular biology — Posted on 2018-09-26

433 Heritability enrichment in open chromatin reveals cortical layer contributions to schizophrenia

Hook, P. W.; McCallion, A. S.

10.1101/427484 — genetics — Posted on 2018-09-26

434 A Reptilian Endogenous Foamy Virus Sheds Light on the Early Evolution of Retroviruses

Wei, X.; Chen, Y.; Holmes, E. C.; Cui, J.

10.1101/426585 — evolutionary biology — Posted on 2018-09-26

435 Visualizing metabolic network dynamics through time-series metabolomics data

Buchweitz, L. F.; Yurkovich, J. T.; Blessing, C.; Kohler, V.; Schwarzkopf, F.; King, Z. A.; Yang, L.; Johannsson, F.; Sigurjonsson, O.; Rolfsson, O.; Heinrich, J.; Draeger, A.

10.1101/426106 — systems biology — Posted on 2018-09-26

436 Molecular Nearest Neighbors Determine Generalization of Odorant Mixtures

Brackney, R. J.; Smith, B. H.; Dai, K.; Gerkin, R. C.

10.1101/427401 — neuroscience — Posted on 2018-09-26

437 The requirement for the amino acid co-germinant during C. difficile spore germination is influenced by mutations in yabG and cspA

Shrestha, R.; Sorg, J. A.

10.1101/427021 — microbiology — Posted on 2018-09-26

438 Assessment of biological role and insight into druggability of the Plasmodium falciparum protease plasmepsin V

Goldberg, D. E.; Niles, J.; Polino, A. J.; Nasamu, A. S.

10.1101/426486 — microbiology — Posted on 2018-09-26

439 Macroscale estimates of species abundance reveal evolutionary drivers of biodiversity

Fukaya, K.; Kusumoto, B.; Shiono, T.; Fujinuma, J.; Kubota, Y.

10.1101/426379 — ecology — Posted on 2018-09-26

440 Sequence effects on size, shape, and structural heterogeneity in Intrinsically Disordered Proteins

Baul, U.; Chakraborty, D.; Mugnai, M. L.; Straub, J. E.; Thirumalai, D.

10.1101/427476 — biophysics — Posted on 2018-09-26

441 Homeolog expression quantification methods for allopolyploids

Kuo, T.; Hatakeyama, M.; Tameshige, T.; Shimizu, K. K.; Sese, J.

10.1101/426437 — bioinformatics — Posted on 2018-09-26

442 Cross-linking/Mass Spectrometry: A Community-Wide, Comparative Study Towards Establishing Best Practice Guidelines

Iacobucci, C.; Piotrowski, C.; Aebersold, R.; Amaral, B. C.; Andrews, P.; Borchers, C.; Brodie, N. I.; Bruce, J. E.; Chaignepain, S.; Chavez, J. D.; Claverol, S.; Cox, J.; Degliesposti, G.; Dong, M. Q.; Edinger, N.; Emanuelsson, C.; Gay, M.; Goetze, M.; Gozzo, F. C.; Gutierrez, C.; Haupt, C.; Heck, A. J. R.; Herzog, F.; Huang, L.; Hoopmann, M. R.; Kalisman, N.; Klykov, O.; Kukacka, Z.; Liu, F.; MacCoss, M. J.; Mechtler, K.; Mesika, R.; Moritz, R. L.; Nagaraj, N.; Nesati, V.; Ninnis, R.; Novak, P.; O'Reilly, F. J.; Pelzing, M.; Petrotchenko, E.; Piersimoni, L.; Plasencia, M.; Pukala, T.; Rand,

10.1101/424697 — biochemistry — Posted on 2018-09-26

443 The dorsolateral striatum regulates habits by way of performance vigor when actions are initiated

Crego, A. C. G.; Stocek, F.; Marchuk, A. G.; Carmichael, J. E.; van der Meer, M. A. A.; Smith, K. S.

10.1101/426031 — animal behavior and cognition — Posted on 2018-09-26

444 Chemosensory structure and function in the filarial nematode, Brugia malayi.

Fraser, L. M.; Madriz, I.; Srinivasan, D.; Zamanian, M.; Bartholomay, L.; Kimber, M.

10.1101/427229 — microbiology — Posted on 2018-09-26

445 A bacterial DNA repair pathway specific to a natural antibiotic

Burby, P. E.; Simmons, L. A.

10.1101/426304 — microbiology — Posted on 2018-09-26

446 Mycobacterium tuberculosis inhibits autocrine type I interferon signaling to increase intracellular survival.

Banks, D. A.; Ahlbrand, S. E.; Hughitt, V. K.; Shah, S.; Vogel, S. N.; El-Sayed, N. M.; Briken, V.

10.1101/425116 — microbiology — Posted on 2018-09-26

447 Mutual regulation underlies paralogue functional diversification

Gurska, D.; Vargas Jentzsch, I. M.; Panfilio, K. A.

10.1101/427245 — evolutionary biology — Posted on 2018-09-26

448 Stronger and higher proportion of beneficial amino acid changing mutations in humans compared to mice and flies

Zhen, Y.; Huber, C. D.; Davies, R. W.; Lohmueller, K. E.

10.1101/427583 — evolutionary biology — Posted on 2018-09-26

449 Spatial ecology of Paraguay’s last remaining Atlantic forest jaguars (Panthera onca): implications for their long-term survival

McBride, R. T.; Thompson, J. J.

10.1101/426940 — ecology — Posted on 2018-09-26

450 Rapid CD4 cell loss is caused by specific CRF01_AE cluster with V3 signatures favoring CXCR4 usage

Song, H.; Ou, W.; Feng, Y.; Zhang, J.; Li, F.; Hu, J.; Peng, H.; Xing, H.; Ma, L.; Tan, Q.; Wu, B.; Shao, Y.

10.1101/427625 — microbiology — Posted on 2018-09-26

451 Non-canonical Drosophila X chromosome dosage compensation and repressive topologically-associated domains

Lee, H.; Oliver, B.

10.1101/427443 — genomics — Posted on 2018-09-26

452 Deeply conserved susceptibility in a multi-host, multi-parasite system

Barrow, L. N.; McNew, S. M.; Mitchell, N.; Galen, S. C.; Lutz, H. L.; Skeen, H.; Valqui, T.; Weckstein, J. D.; Witt, C. C.

10.1101/424549 — evolutionary biology — Posted on 2018-09-26

453 Untangling the dynamics of persistence and colonization in microbial communities

Ranjeva, S. L.; Mihaljevic, J. R.; Joseph, M. B.; Giuliano, A. R.; Dwyer, G.

10.1101/427542 — ecology — Posted on 2018-09-26

454 BrainNet: A Multi-Person Brain-to-Brain Interface for Direct Collaboration Between Brains

Jiang, L.; Stocco, A.; Losey, D. M.; Abernethy, J. A.; Prat, C.; Rao, R. P. N.

10.1101/425066 — bioengineering — Posted on 2018-09-26

455 Human chaperones untangle fibrils of the Alzheimer protein Tau

Ferrari, L.; Geerts, W. J. C.; van Wezel, M.; Kos, R.; Konstantoulea, A.; van Bezouwen, L. S.; Forster, F. G.; Rudiger, S. G. D.

10.1101/426650 — biochemistry — Posted on 2018-09-26

456 First Whole-Body Three-Dimensional Tomographic Imaging of Alpha Particle Emitting Radium-223

Abou, D. S.; Rittenbach, A.; Tomlinson, R. E.; Finley, P. A.; Tsui, B.; Simons, B. W.; Ulmert, D.; Riddle, R. C.; Thorek, D. L.

10.1101/414649 — pharmacology and toxicology — Posted on 2018-09-26

457 Changes in pregnancy-related serum biomarkers early in gestation are associated with later development of preeclampsia

Hao, S.; You, J.; Chen, L.; Zhao, H.; Huang, Y.; Zheng, L.; Tian, L.; Maric, I.; Liu, X.; Li, T.; Bianco, Y. K.; Winn, V. D.; AGHAEEPOUR, N.; Gaudilliere, B.; Angst, M. S.; Zhou, X.; Li, Y.-M.; Mo, L.; Wong, R. J.; Shaw, G. M.; Stevenson, D.; Cohen, H. J.; MCELHINNEY, D. B.; Sylvester, K. G.; Ling, X. B.

10.1101/425306 — molecular biology — Posted on 2018-09-26

458 Mapping DNA replication with nanopore sequencing

Hennion, M.; Arbona, J.-M.; Cruaud, C.; Proux, F.; Le Tallec, B.; Novikova, E.; Engelen, S.; Lemainque, A.; Audit, B.; Hyrien, O.

10.1101/426858 — genomics — Posted on 2018-09-26

459 Preventions of oral self-mutilation in patients with Lesch-Nyhan syndrome

Carvalho, L. V. d.; Oliveira, L. F. d.; Chaves, T. F.

10.1101/425967 — genetics — Posted on 2018-09-26

460 CaSpER: Identification, visualization and integrative analysis of CNV events in multiscale resolution using single-cell or bulk RNA sequencing data

Serin Harmanci, A.; Harmanci, A. O.; Zhou, X.

10.1101/426122 — bioinformatics — Posted on 2018-09-26

461 Fast and sensitive protein sequence homology searches using hierarchical cluster BLAST

Nasko, D. J.; Wommack, K. E.; Ferrell, B. D.; Polson, S. W.

10.1101/426098 — bioinformatics — Posted on 2018-09-26

462 Continuous and discrete quantity discrimination in tortoises

Gazzola, A.; Vallortigara, G.; Pellitteri-Rosa, D.

10.1101/425678 — animal behavior and cognition — Posted on 2018-09-26

463 Structural brain alterations in youth with psychosis and bipolar spectrum symptoms

Jalbrzikowski, M.; Freedman, D.; Hegarty, C.; Mennigen, E.; Karlsgodt, K. H.; Olde Loohuis, L. M.; Ophoff, R.; Gur, R.; Bearden, C.

10.1101/427609 — neuroscience — Posted on 2018-09-26

464 The augmentation of retinogeniculate communication during thalamic burst mode

Alitto, H. J.; Rathbun, D. L.; Vandeleest, J. J.; Alexander, P. C.; Usrey, W. M.

10.1101/427674 — neuroscience — Posted on 2018-09-26

465 A nematode retrotransposon in the common shrew: horizontal transfer between parasite and host

Dunemann, S. M.; Wasmuth, J.

10.1101/424424 — genomics — Posted on 2018-09-26

466 Shared and distinct genetic risk factors for childhood onset and adult onset asthma

Pividori, M.; Schoettler, N.; Nicolae, D. L.; Ober, C.; Im, H. K.

10.1101/427427 — genetics — Posted on 2018-09-26

467 Elucidation of Codon Usage Signatures across the Domains of Life

Novoa, E. M.; Jaillon, O.; Jungreis, I.; Kellis, M.

10.1101/421487 — evolutionary biology — Posted on 2018-09-26

468 Universal Light-Sheet Generation with Field Synthesis

Chang, B.-J.; Kittisopikul, M.; Dean, K. M.; Roudot, P.; Welf, E.; Fiolka, R. P.

10.1101/427468 — bioengineering — Posted on 2018-09-26

469 Multiplex transcriptional characterizations across diverse and hybrid bacterial cell-free expression systems

Yim, S. S.; Johns, N. I.; Park, J.; Gomes, A. L. C.; McBee, R. M.; Richardson, M.; Ronda, C.; Chen, S. P.; Garenne, D.; Noireaux, V.; Wang, H. H.

10.1101/427559 — synthetic biology — Posted on 2018-09-26

470 Effectiveness of physical inactivation methods of dengue virus: heat- versus UV-inactivation

Idris, F.; Muharram, S. H.; Zaini, Z.; Diah, S.

10.1101/427666 — microbiology — Posted on 2018-09-26

471 Detection of residual disease after neoadjuvant therapy in breast cancer using personalized circulating tumor DNA analysis

McDonald, B. R.; Contente-Cuomo, T.; Sammut, S.-J.; Odenheimer-Bergman, A.; Ernst, B.; Perdigones, N.; Chin, S.-F.; Farooq, M.; Cronin, P. A.; Anderson, K. S.; Kosiorek, H. E.; Northfelt, D. W.; McCullough, A. E.; Patel, B. K.; Caldas, C.; Pockaj, B. A.; Murtaza, M.

10.1101/425470 — genomics — Posted on 2018-09-26

472 Do Plant Mitochondria Even Need Base Excision Repair?

Wynn, E.; Christensen, A.

10.1101/427500 — genetics — Posted on 2018-09-26

473 Exploiting selection at linked sites to infer the rate and strength of adaptation

Uricchio, L. H.; Petrov, D. A.; Enard, D.

10.1101/427633 — evolutionary biology — Posted on 2018-09-26

474 Generalized sample verification models to estimate ecological state variables with detection-nondetection data while accounting for imperfect detection and false positive errors.

Clare, J.; Townsend, P.; Zuckerberg, B.

10.1101/422527 — ecology — Posted on 2018-09-26

475 pavo 2.0: new tools for the spectral and spatial analysis of colour in R

Maia, R.; Gruson, H.; Endler, J. A.; White, T. E.

10.1101/427658 — animal behavior and cognition — Posted on 2018-09-26

476 Overview of the SAMPL6 host-guest binding affinity prediction challenge

Rizzi, A.; Murkli, S.; McNeill, J. N.; Yao, W.; Sullivan, M.; Gilson, M. K.; Chiu, M. W.; Isaacs, L.; Gibb, B. C.; Mobley, D. L.; Chodera, J. D.

10.1101/371724 — biophysics — Posted on 2018-09-25

477 Application of the fluctuation theorem for non-invasive force measurement in living neuronal axons

Hayashi, K.; Tsuchizawa, Y.; Iwaki, M.; Okada, Y.

10.1101/233064 — biophysics — Posted on 2018-09-25

478 Cancer cell lipid class homeostasis is altered under nutrient-deprivation but stable under hypoxia

Lisec, J.; Jaeger, C.; Zaidi, N.

10.1101/382457 — biochemistry — Posted on 2018-09-25

479 Epigenomic convergence of genetic and immune risk factors in neurodevelopmental disorder cortex

Vogel Ciernia, A.; Laufer, B. I.; Dunaway, K. W.; Hwang, H.; Mordaunt, C. E.; Coulson, R. L.; Yasui, D. H.; LaSalle, J. M.

10.1101/270827 — genomics — Posted on 2018-09-25

480 Extended regions of suspected mis-assembly in the rat reference genome

Ramdas, S.; Ozel, A. B.; Holl, K.; Mandel, M.; Solberg Woods, L.; Li, J. Z.

10.1101/332932 — genomics — Posted on 2018-09-25

481 pKa measurements for the SAMPL6 prediction challenge for a set of kinase inhibitor-like fragments

Isık, M.; Levorse, D.; Rustenburg, A. S.; Ndukwe, I. E.; Wang, H.; Wang, X.; Reibarkh, M.; Martin, G. E.; Makarov, A. A.; Mobley, D. L.; Rhodes, T.; Chodera, J. D.

10.1101/368787 — biophysics — Posted on 2018-09-25

482 Inducible Cooperation in a Synthetic Gut Bacterial Consortium Introduces Population Balance and Stability

Ziesack, M.; Gibson, T.; Shumaker, A. M.; Oliver, J. K.; Riglar, D. T.; Giessen, T. W.; DiBenedetto, N. V.; Lall, K.; Hsu, B. B.; Bry, L.; Way, J. C.; Silver, P. A.; Gerber, G. K.

10.1101/426171 — synthetic biology — Posted on 2018-09-25

483 Rational design of hidden thermodynamic driving through DNA mismatch repair

Haley, N. E. C.; Ouldridge, T. E.; Geraldini, A.; Louis, A. A.; Bath, J.; Turberfield, A. J.

10.1101/426668 — synthetic biology — Posted on 2018-09-25

484 beditor: A computational workflow for designing libraries of guide RNAs for CRISPR base editing

Dandage, R.; Despres, P. C.; Yachie, N.; Landry, C. R.

10.1101/426973 — synthetic biology — Posted on 2018-09-25

485 The spatial chronnectome reveals a dynamic interplay between functional segregation and integration

Iraji, A.; DeRamus, T.; Lewis, N.; Yaesoubi, M.; Stephen, J. M.; Erhardt, E.; Belger, A.; Ford, J.; McEwen, S.; Mathalon, D.; Mueller, B.; Pearlson, G.; Potkin, S.; Preda, A.; Turner, J.; Vaidya, J.; van Erp, T.; Calhoun, V.

10.1101/427450 — neuroscience — Posted on 2018-09-25

486 The Structure of Oxalate Decarboxylase at its Active pH

Burg, M. J.; Goodsell, J. L.; Twahir, U. T.; Bruner, S. D.; Angerhofer, A.

10.1101/426874 — biophysics — Posted on 2018-09-25

487 Visualization of the relative contributions of conductances in neuronal models with similar behavior and different conductance densities

Alonso, L. M.; Marder, E.

10.1101/427260 — neuroscience — Posted on 2018-09-25

488 Asymmetric ephaptic inhibition between compartmentalized olfactory receptor neurons

Zhang, Y.; Tsang, T. K.; Bushong, E. A.; Chu, L.-A.; Chiang, A.-S.; Ellisman, M. H.; Reingruber, J.; Su, C.-Y.

10.1101/427252 — neuroscience — Posted on 2018-09-25

489 Comprehensive computational modelling of the development of mammalian cortical connectivity underlying an architectonic type principle

Beul, S. F.; Goulas, A.; Hilgetag, C. C.

10.1101/426718 — neuroscience — Posted on 2018-09-25

490 Directed nucleosome sliding during the formation of the SV40 virus particle exposes DNA sequences required for early transcription

Ajeeth-Kumar, M.; Kasti, K.; Balakrishnan, L.; Milavetz, B.

10.1101/426452 — molecular biology — Posted on 2018-09-25

491 Repeated Δ9-tetrahydrocannabinol (THC) vapor inhalation during adolescence: Sex differences inacute thermoregulatory tolerance and in feeding during adulthood

Nguyen, J. D.; Creehan, K. M.; Kerr, T. M.; Taffe, M. A.

10.1101/426064 — pharmacology and toxicology — Posted on 2018-09-25

492 Verifying, Challenging, and Discovering New Synapses among Fully EM-Reconstructed Neurons in the Leech Ganglion

Pipkin, J. E.; Bushong, E. A.; Ellisman, M. H.; Kristan, W. B.

10.1101/427377 — neuroscience — Posted on 2018-09-25

493 Enhancer variants associated with Alzheimer’s disease affect gene expression via chromatin looping

Kikuchi, M.; Hara, N.; Hasegawa, M.; Miyashita, A.; Kuwano, R.; Ikeuchi, T.; Nakaya, A.

10.1101/426312 — genomics — Posted on 2018-09-25

494 Towards inferring causal gene regulatory networks from single cell expression measurements

Qiu, X.; Rahimzamani, A.; Wang, L.; Mao, Q.; Durham, T.; McFaline-Figueroa, J. L.; Saunders, L.; Trapnell, C.; Kannan, S.

10.1101/426981 — genomics — Posted on 2018-09-25

495 Zebrafish Otolith Biomineralization Requires Polyketide Synthase

Thiessen, K. D.; Grzegorski, S. J.; Higuchi, L.; Shavit, J. A.; Kramer, K. L.

10.1101/396630 — developmental biology — Posted on 2018-09-25

496 Leveraging single cell RNA sequencing experiments to model intra-tumor heterogeneity

Ferrall-Fairbanks, M. C.; Ball, M.; Padron, E.; Altrock, P. M.

10.1101/427047 — cancer biology — Posted on 2018-09-25

497 The diurnal transcriptional landscape of the microalga Tetradesmus obliquus

Carreres, B.; Leon Saiki, G. M.; Schaap, P.; Remmers, I. M.; van der Veen, D.; Martins dos Santos, V. A.; Wijffels, R. H.; Martens, D.; Suarez-Diez, M.

10.1101/425934 — plant biology — Posted on 2018-09-25

498 Genomic basis of multidrug-resistance, mating, and virulence in Candida auris and related emerging species

Munoz, J. F.; Gade, L.; Chow, N. A.; Loparev, V. N.; Juieng, P.; Berkow, E. L.; Farrer, R. A.; Litvintseva, A. P.; Cuomo, C. A.

10.1101/299917 — genomics — Posted on 2018-09-25

499 Process-specific somatic mutation distributions vary with three-dimensional genome structure

Akdemir, K. C.; Le, V. T.; Killcoyne, S.; King, D. A.; Li, Y.-P.; Lian, Y.; Inoue, A.; Amin, S.; Robinson, F. S.; Herrera, R. E.; Lynn, E. J.; Chan, K.; Seth, S.; Klimczak, L. J.; Gerstung, M.; Gordenin, D. A.; O'Brien, J.; Li, L.; Verhaak, R. G.; Campbell, P.; Fitzgerald, R.; Morrison, A. J.; Dixon, J. R.; Futreal, A.

10.1101/426080 — genomics — Posted on 2018-09-25

500 Non-neutral evolution of H3.3-encoding genes occurs without alterations in protein sequence

Muhire, B. M.; Booker, M. A.; Tolstorukov, M. Y.

10.1101/422311 — evolutionary biology — Posted on 2018-09-25

501 Sex-specific impact of patterns of imageable tumor growth on survival of primary glioblastoma patients

Whitmire, P.; Rickertsen, C. R.; Hawkins-Daarud, A.; Carrasco, E.; Lorence, J.; De Leon, G.; Curtin, L.; Bayless, S.; Clark-Swanson, K.; Peeri, N. C.; Corpuz, C.; Lewis-de los Angeles, C. P.; Bendok, B. R.; Gonzalez-Cuyar, L.; Vora, S.; Mrugala, M.; Hu, L. S.; Wang, L.; Porter, A.; Kumthekar, P.; Johnston, S. K.; Egan, K. M.; Gatenby, R.; Canoll, P.; Rubin, J. B.; Swanson, K. R.

10.1101/325464 — cancer biology — Posted on 2018-09-25

502 Fronto-central P3a to distracting sounds: an index of their arousing properties

Masson, R.; Bidet-Caulet, A.

10.1101/333419 — neuroscience — Posted on 2018-09-25

503 Changes in mRNA abundance drive differential shuttling of RNA binding proteins, linking cytoplasmic RNA degradation to transcription

Gilbertson, S.; Federspiel, J. D.; Hartenian, E.; Cristea, I. M.; Glaunsinger, B.

10.1101/295972 — molecular biology — Posted on 2018-09-25

504 Molecular Epidemiology and Mechanisms of Antibiotic Resistance in Gram-positive Bacteria in Africa: A Systematic Review and Meta-Analysis from a One Health Perspective

Osei Sekyere, J.; Mensah, E. A.

10.1101/366807 — microbiology — Posted on 2018-09-25

505 Temporal control of gene expression by the pioneer factor Zelda through transient interactions in hubs

Dufourt, J.; Trullo, A.; Hunter, J.; Fernandez, C.; Lazaro, J.; Dejean, M.; Morales, L.; Schulz, K. N.; Harrison, M. M.; Radulescu, O.; Favard, C.; Lagha, M.

10.1101/282426 — developmental biology — Posted on 2018-09-25

506 Rapid, noninvasive, and unsupervised detection of sleep/wake using piezoelectric monitoring for pharmacological studies in narcoleptic mice

Black, S. W.; Sun, J. D.; Laihsu, A.; Kimura, N.; Santiago, P.; Donohue, K. D.; O'Hara, B. F.; Bersot, R.; Humphries, P. S.

10.1101/226522 — neuroscience — Posted on 2018-09-25

507 Facilitating Patient and Public Involvement in basic and preclinical health research.

Maccarthy, J.; Guerin, S.; Wilson, A. G.; Dorris, E.

10.1101/425371 — scientific communication and education — Posted on 2018-09-25

508 Nuclear export of chimeric mRNAs depends on an lncRNA-triggered autoregulatory loop

Chen, Z.-H.; Zen, Z.; Chen, T.-Q.; Han, C.; Sun, Y.-M.; Huang, W.; Sun, L.-Y.; Fang, K.; Luo, X.-Q.; Wang, W.-T.; Chen, M. Y.

10.1101/426742 — cancer biology — Posted on 2018-09-25

509 Molecular changes during extended neoadjuvant letrozole treatment of breast cancer: distinguishing acquired resistance from dormant tumours

Selli, C.; Turnbull, A. K.; Pearce, D. A.; Li, A.; Fernando, A.; Wills, J.; Renshaw, L.; Thomas, J. S.; Dixon, J. M.; Sims, A. H.

10.1101/426155 — cancer biology — Posted on 2018-09-25

510 Pathway analysis of GWAS loci identifies novel drug targets and repurposing opportunities

Jhamb, D.; Magid-Slav, M.; Hurle, M.; Agarwal, P.

10.1101/425769 — genomics — Posted on 2018-09-25

511 Emergence and the spread of the F200Y benzimidazole resistance mutation in Haemonchus contortus and Haemonchus placei from buffalo and cattle

Ali, Q.; Rashid, I.; Shabbir, M. Z.; Rahman, A.-U.; Shahzad, K.; Ashraf, K.; Sargison, N.; Chaudhry, U.

10.1101/425660 — genetics — Posted on 2018-09-25

512 Sexual selection, environmental robustness and evolutionary demography of maladapted populations: a test using experimental evolution in seed beetles.

Martinossi-Allibert, I.; Thilliez, E.; Arnqvist, G.; Berger, D.

10.1101/426056 — evolutionary biology — Posted on 2018-09-25

513 Dual mechanism of TRKB activation by anandamide through CB1 and TRPV1 receptors

Alves Faria Diniz, C. R.; Biojone, C.; Joca, S.; Rantamaki, T.; Castren, E.; Guimaraes, F.; Casarotto, P.

10.1101/427153 — neuroscience — Posted on 2018-09-25

514 Xrs2 and Tel1 independently contribute to MR-mediated DNA tethering and replisome stability

Oh, J.; Lee, S. J.; Rothstein, R.; Symington, L. S.

10.1101/425942 — genetics — Posted on 2018-09-25

515 Environmental oscillations favor the evolution of adaptive transgenerational plasticity

Colicchio, J.; Herman, J. J.

10.1101/426007 — ecology — Posted on 2018-09-25

516 The statistics of noisy growth with mechanical feedback in elastic tissues

Khatib Damavandi, O.; Lubensky, D. K.

10.1101/426361 — biophysics — Posted on 2018-09-25

517 Phospholipid-Cellulose Interactions: Insight from Atomistic Computer Simulations for Understanding the Impact of Cellulose-Based Materials on Plasma Membranes

Gurtovenko, A.; Mukhamadiarov, E.; Kostritskii, A.; Karttunen, M.

10.1101/425686 — biophysics — Posted on 2018-09-25

518 Early Neural Correlates of an Auditory Pitch - Visual Size Cross-modal Association

Boyle, S. C.; Kayser, C.; Ince, R. A. A.

10.1101/423939 — neuroscience — Posted on 2018-09-25

519 Impaired ureagenesis due to arginine-insensitive N-acetylglutamate synthase

Sonaimuthu, P.; Senkevitch, E.; Haskins, N.; Uapinyoying, P.; McNutt, M.; Morizono, H.; Tuchman, M.; Caldovic, L.

10.1101/425959 — molecular biology — Posted on 2018-09-25

520 NATF (Native And Tissue-specific Fluorescence): A strategy for bright, tissue-specific GFP labeling of native proteins.

He, S.; Cuentas-Condori, A.; Miller, D. M.

10.1101/426205 — cell biology — Posted on 2018-09-25

521 Leveraging single cell RNA sequencing experiments to model intra-tumor heterogeneity

Ferrall-Fairbanks, M. C.; Ball, M.; Padron, E.; Altrock, P. M.

10.1101/427047 — cancer biology — Posted on 2018-09-25

522 Tertiary structural motif sequence statistics enable facile prediction and design of peptides that bind anti-apoptotic Bfl-1 and Mcl-1

Frappier, V.; Jenson, J. M.; Zhou, J.; Grigoryan, G.; Keating, A. E.

10.1101/425926 — biophysics — Posted on 2018-09-25

523 The impact of a reduced calorie, macronutrient diet change on Caucasian males in relation to genotypes associated with obesity, increased BMI and dietary response.

Ellis, L.; Collins, C.

10.1101/425702 — genomics — Posted on 2018-09-25

524 Rifampicin and rifabutin resistance in 1000 Mycobacterium tuberculosis clinical isolates

Farhat, M. R.; Sixsmith, J.; Calderon, R.; Hicks, N.; Fortune, S.; Murray, M.

10.1101/425652 — evolutionary biology — Posted on 2018-09-25

525 Tunneling nanotubes contribute to the stroma-mediated imatinib resistance of leukemic cells

Kolba, M. D.; Dudka, W.; Zareba-Koziol, M.; Kominek, A.; Ronchi, P.; Turos, L.; Wlodarczyk, J.; Schwab, Y.; Cysewski, D.; Srpan, K.; Davis, D. M.; Piwocka, K.

10.1101/425041 — cancer biology — Posted on 2018-09-25

526 Novel 5-Hydroxymethylcytosine Markers for Pancreatic Cancer

Zeng, C.; Zhang, Z.; Wang, J.; Chiu, B. C.-H.; Hou, L.; Zhang, W.

10.1101/425983 — cancer biology — Posted on 2018-09-25

527 An Alternative Framework for Fluorescence Correlation Spectroscopy

Jazani, S.; Sgouralis, I.; Shafraz, O. M.; Sivasankar, S.; Presse, S.

10.1101/426114 — biophysics — Posted on 2018-09-25

528 goCTF: Geometrically optimized CTF determination for single-particle cryo-EM

Su, M.

10.1101/426189 — biophysics — Posted on 2018-09-25

529 Long-range inhibitory intersection of a retrosplenial thalamocortical circuit by apical tuft-targeting CA1 neurons

Yamawaki, N.; Li, X.; Lambot, L.; Ren, L. Y.; Radulovic, J.; Shepherd, G. M.

10.1101/427179 — neuroscience — Posted on 2018-09-25

530 Pptc7 is an essential phosphatase for promoting mammalian mitochondrial metabolism and biogenesis

Niemi, N. M.; Wilson, G. M.; Overmyer, K. A.; Vogtle, F.- N.; Lohman, D. C.; Schueler, K. L.; Attie, A. D.; Meisinger, C.; Coon, J. J.; Pagliarini, D. J.

10.1101/426247 — biochemistry — Posted on 2018-09-25

531 SIX1 cooperates with RUNX1 and SMAD4 in cell fate commitment of Müllerian duct epithelium

Terakawa, j.; Serna, V. A.; Nair, D.; Sato, S.; Kawakami, K.; Radovick, S.; Maire, P.; Kurita, T.

10.1101/427351 — developmental biology — Posted on 2018-09-25

532 Fine-tuned adaptation of embryo-endometrium pairs at implantation revealed by gene regulatory networks

Biase, F.; Hue, I.; Dickinson, S.; Jaffrezic, F.; Laloe, D.; Lewin, H.; Sandra, O.

10.1101/427310 — developmental biology — Posted on 2018-09-25

533 Macaque anterior cingulate cortex deactivation impairs performance and alters lateral prefrontal oscillatory activities in a rule-switching task

Ma, L.; Chan, J.; Johnston, K.; Lomber, S.; Everling, S.

10.1101/427302 — neuroscience — Posted on 2018-09-25

534 Retinoblastoma binding protein 4 maintains cycling neural stem cells and prevents DNA damage and Tp53-dependent apoptosis in rb1 mutant neural progenitors

Schultz-Rogers, L. E.; Almeida, M. P.; Wierson, W. A.; Kool, M.; McGrail, M.

10.1101/427344 — genetics — Posted on 2018-09-25

535 Gata4 drives Hh-signaling for second heart field migration and outflow tract development

Liu, J.; Cheng, H.; Xiang, M.; Zhou, L.; Zhang, K.; Moskowitz, I. P.; Xie, L.

10.1101/427336 — developmental biology — Posted on 2018-09-25

536 Infection-generated electric field in gut epithelium drives bidirectional migration of macrophages

sun, y.; Reid, B.; Ferreira, F.; Luxardi, G.; Ma, L.; Lokken, K. L.; Zhu, K.; Xu, G.; Sun, Y.; Ryzhuk, V.; Guo, B. P.; Lebrilla, C. B.; Maverakis, E. M.; Mogilner, A.; Zhao, M.

10.1101/427294 — cell biology — Posted on 2018-09-25

537 The Shape of the Ribosome Exit Tunnel Affects Cotranslational Protein Folding

Kudva, R.; Tian, P.; Pardo-Avila, F.; Carroni, M.; Best, R. B.; Bernstein, H. D.; Von Heijne, G.

10.1101/274191 — biochemistry — Posted on 2018-09-25

538 CLIP-Seq and massively parallel functional analysis of the CELF6 RNA binding protein reveals a role in destabilizing synaptic gene mRNAs through interaction with 3’UTR elements in vivo

Rieger, M. A.; King, D. M.; Cohen, B. A.; Dougherty, J. D.

10.1101/401604 — molecular biology — Posted on 2018-09-25

539 Genotypic context modulates fitness landscapes: Effects onthe speed and direction of evolution for antimicrobialresistance

Ogbunugafor, C. B.; Guerrero, R. F.; Eppstein, M. J.

10.1101/427328 — evolutionary biology — Posted on 2018-09-25

540 μ-rhythm extracted with personalized EEG filters correlates with corticospinal excitability in real-time phase-triggered EEG-TMS

Schaworonkow, N.; Caldana Gordon, P.; Belardinelli, P.; Ziemann, U.; Bergmann, T. O.; Zrenner, C.

10.1101/426528 — neuroscience — Posted on 2018-09-25

541 Evaluating FAIR-Compliance Through an Objective, Automated, Community-Governed Framework

Wilkinson, M. D.; Dumontier, M.; Sansone, S.-A.; Bonino da Silva Santos, L. O.; Prieto, M.; Gautier, J.; McQuilton, P.; Murphy, D.; Crosas, M.; Schultes, E.

10.1101/418376 — scientific communication and education — Posted on 2018-09-25

542 SorCS2 controls functional expression of amino acid transporter EAAT3 to protect neurons from oxidative stress and epilepsy-induced pathology

Malik, A. R.; Szydlowska, K.; Nizinska, K.; Asaro, A.; van Vliet, E. A.; Popp, O.; Dittmar, G.; Nykjaer, A.; Lukasiuk, K.; Aronica, E.; Willnow, T. E.

10.1101/426734 — neuroscience — Posted on 2018-09-25

543 Repeated evolution of a morphological novelty: a phylogenetic analysis of the inflated fruiting calyx in the Physalideae tribe (Solanaceae)

Deanna, R.; Larter, M. D.; Barboza, G. E.; Smith, S. D.

10.1101/425991 — evolutionary biology — Posted on 2018-09-25

544 Quantitative modelling explains distinct STAT1 and STAT3 activation dynamics in response to both IFNγ and IL-10 stimuli and predicts emergence of reciprocal signalling at the level of single cells

Sarma, U.; Mukherjee, D.; Maiti, M.; Bhadange, S.; Nair, A.; Srivastava, A.; Saha, B.

10.1101/425868 — systems biology — Posted on 2018-09-25

545 Characterization of deep neural network features by decodability from human brain activity

Horikawa, T.; Aoki, S. C.; Tsukamoto, M.; Kamitani, Y.

10.1101/424168 — neuroscience — Posted on 2018-09-25

546 Meta-analysis challenges a textbook example of status signalling and demonstrates publication bias

Sanchez-Tojar, A.; Nakagawa, S.; Sanchez-Fortun, M.; Martin, D. A.; Ramani, S.; Girndt, A.; Bokony, V.; Kempenaers, B.; Liker, A.; Westneat, D.; Burke, T.; Schroeder, J.

10.1101/283150 — evolutionary biology — Posted on 2018-09-25

547 Amygdala neuronal ensembles dynamically encode behavioral states

Gründemann, J.; Bitterman, Y.; Lu, T.; Krabbe, S.; Grewe, B. F.; Schnitzer, M. J.; Lüthi, A.

10.1101/425736 — neuroscience — Posted on 2018-09-25

548 Transient patterns of functional dysconnectivity in youth with psychosis spectrum symptoms

Mennigen, E.; Jolles, D. D.; Hegarty, C.; Gupta, M.; Jalbrzikowski, M.; Olde Loohuis, L.; Ophoff, R. A.; Karlsgodt, K. H.; Bearden, C. E.

10.1101/426932 — neuroscience — Posted on 2018-09-25

549 Individual selection leads to collective efficiency through coordination

Bernard, A.; Bredeche, N.; Andre, J.-B.

10.1101/422287 — evolutionary biology — Posted on 2018-09-25

550 MYCN-induced metabolic rewiring creates novel therapeutic vulnerabilities in neuroblastoma

Tjaden, B.; Baum, K.; Marquardt, V.; Simon, M.; Trajkovic-Arsic, M.; Kouril, T.; Siebers, B.; Lisec, J.; Siveke, J. T.; Schulte, J. H.; Benary, U.; Remke, M.; Wolf, J.; Schramm, A.

10.1101/423756 — cancer biology — Posted on 2018-09-25

551 Critical Limb Ischemia Induces Remodeling of Skeletal Muscle Motor Unit and Myonuclear- and Mitochondrial-Domains

Mohiuddin, M.; Lee, N. H.; Moon, J. Y.; Han, W. M.; Anderson, S. E.; Choi, J. J.; Nakhai, S.; Tran, T.; Aliya, B.; Kim, D. Y.; Gerold, A.; Hansen, L.; Taylor, W. R.; Jang, Y. C.

10.1101/426403 — physiology — Posted on 2018-09-25

552 Evolutionary analysis of base-pairing interactions in DNA and RNA secondary structures

Golden, M. T.; Murrell, B.; Martin, D.; Hein, J.

10.1101/419341 — molecular biology — Posted on 2018-09-25

553 Generalization guides human exploration in vast decision spaces

Wu, C. M.; Schulz, E.; Speekenbrink, M.; Nelson, J. D.; Meder, B.

10.1101/171371 — animal behavior and cognition — Posted on 2018-09-25

554 Automated leg tracking reveals distinct conserved gait and tremor signatures in Drosophila models of Parkinson’s Disease and Spinocerebellar ataxia 3

Wu, S.; Tan, K. J.; Govindarajan, L. N.; Stewart, J. C.; Gu, L.; Ho, J. W. H.; Katarya, M.; Wong, B. H.; Tan, E.-K.; Li, D.; Claridge-Chang, A.; Libedinsky, C. D.; Cheng, L.; Aw, S. S.

10.1101/425405 — neuroscience — Posted on 2018-09-25

555 Nicotinic and Cholinergic Modulation ofReward Prediction Error Computations in theVentral Tegmental Area: a Minimal CircuitModel.

Deperrois, N.; Gutkin, B. S.

10.1101/423806 — neuroscience — Posted on 2018-09-25

556 Identification of SMARCD1 as a syndromic intellectual disability gene that is required for memory and context-dependent regulation of neuronal genes in Drosophila

Nixon, K. C. J.; Rousseau, J.; Stone, M. H.; Sarikahya, M.; Ehresmann, S.; Mizuno, S.; Matsumoto, N.; Miyake, N.; DDD Study, ; Baralle, D.; McKee, S.; Izumi, K.; Ritter, A.; Heide, S.; Heron, D.; Depienne, C.; Titheradge, H.; Kramer, J. M.; Campeau, P. M.

10.1101/422188 — genetics — Posted on 2018-09-25

557 The second edge of ADHD: an advantage in motor learning and performance with task-irrelevant background vibratory noise

Korman, M.; Meir-Yalon, L.; Egbarieh, N.; Karni, A.

10.1101/426916 — neuroscience — Posted on 2018-09-25

558 μ-rhythm extracted with personalized EEG filters correlates with corticospinal excitability in real-time phase-triggered EEG-TMS

Schaworonkow, N.; Caldana Gordon, P.; Belardinelli, P.; Ziemann, U.; Bergmann, T. O.; Zrenner, C.

10.1101/426528 — neuroscience — Posted on 2018-09-25

559 Influence of Arm Swing on Cost of Transport during Walking

De Graaf, M. L.; Hubert, J.; Houdijk, H.; Bruijn, S. M.

10.1101/426775 — neuroscience — Posted on 2018-09-25

560 Chronology-based architecture of descending circuits that underlie the development of locomotor repertoire after birth.

Pujala, A.; Koyama, M.

10.1101/425587 — neuroscience — Posted on 2018-09-25

561 Propagation of orientation selectivity in a spiking network model of layered primary visual cortex

Merkt, B.; Schuessler, F.; Rotter, S.

10.1101/425694 — neuroscience — Posted on 2018-09-25

562 Glial Ca2+ Signaling Controls Endocytosis and K+ Buffering to Regulate Glial-Neuronal Communication at the Soma

Weiss, S.; Melom, J. E.; Ormerod, K. G.; Zhang, Y. V.; Littleton, J. T.

10.1101/426130 — neuroscience — Posted on 2018-09-25

563 Regeneration of dopaminergic neurons in adult zebrafish depends on immune system activation and differs for distinct populations.

Caldwell, L. J.; Davies, N. O.; Cavone, L.; Mysiak, K. S.; Semenova, S. A.; Panula, P.; Armstrong, J. D.; Becker, C. G.; Becker, T.

10.1101/367151 — neuroscience — Posted on 2018-09-25

564 Left mid-ventral temporal cortex interacts with early visual cortex and the anterior temporal lobe to support word individuation

Boring, M. J.; Hirshorn, E. A.; Li, Y.; Ward, M. J.; Richardson, R. M.; Fiez, J. A.; Ghuman, A. S.

10.1101/411579 — neuroscience — Posted on 2018-09-25

565 An efficient timer and sizer of protein motions reveals the time scales of functional dynamics in structured biomacromolecules

Chan, J.; Lin, H.-R.; Takemura, K.; Chang, K.-C.; Chang, Y.-Y.; Joti, Y.; Kitao, A.; Yang, L.-W.

10.1101/384511 — biophysics — Posted on 2018-09-25

566 Prestimulus neural alpha power predicts confidence in discriminating identical auditory stimuli

Woestmann, M.; Waschke, L.; Obleser, J.

10.1101/285577 — neuroscience — Posted on 2018-09-25

567 Parentage assignment with genotyping-by-sequencing data

Whalen, A.; Gorjanc, G.; Hickey, J.

10.1101/270561 — genetics — Posted on 2018-09-25

568 STDP forms associations between memory traces in networks of spiking neurons

Pokorny, C.; Ison, M. J.; Rao, A.; Legenstein, R.; Papadimitriou, C.; Maass, W.

10.1101/188938 — neuroscience — Posted on 2018-09-25

569 Excised linear introns regulate growth in yeast

Morgan, J. T.; Fink, G. R.; Bartel, D. P.

10.1101/426049 — molecular biology — Posted on 2018-09-25

570 Cell competition corrects noisy Wnt morphogen gradients to achieve robust patterning

Akieda, Y.; Ogamino, S.; Furuie, H.; Ishitani, S.; Akiyoshi, R.; Nogami, J.; Masuda, T.; Shimizu, N.; Ohkawa, Y.; Ishitani, T.

10.1101/423814 — cell biology — Posted on 2018-09-25

571 Id4 eliminates the pro-activation factor Ascl1 to maintain quiescence of adult hippocampal stem cells

Blomfield, I. M.; Rocamonde, B.; Masdeu, M. D. M.; Mulugeta, E.; Vaga, S.; van den Berg, D. L. C.; Huillard, E.; Guillemot, F.; Urban, N.

10.1101/426015 — cell biology — Posted on 2018-09-25

572 Environment and HSP90 modulate MAPK stomatal developmental pathway

Samakovli, D.; Ticha, T.; Ovecka, M.; Luptovciak, I.; Zapletalova, V.; Krasylenko, Y.; Komis, G.; Samajova, O.; Margaritopoulou, T.; Roka, L.; Milioni, D.; Hatzopoulos, P.; Samaj, J.

10.1101/426684 — plant biology — Posted on 2018-09-25

573 A large close relative of C. elegans is slow-developing but not long-lived

Woodruff, G. C.; Johnson, E.; Phillips, P.

10.1101/426254 — evolutionary biology — Posted on 2018-09-25

574 Imaging tissues and cells beyond the diffraction limit with structured illumination microscopy and Bayesian image reconstruction

Pospisil, J.; Lukes, T.; Bendesky, J.; Fliegel, K.; Spendier, K.; Hagen, G. M.

10.1101/426296 — biophysics — Posted on 2018-09-25

575 A cost effective high-resolution climbing assay applied to Drosophila Parkinson’s and proprioception mutants reveal novel behavioural phenotypes

Aggarwal, A.; Reichert, H.; VijayRaghavan, K.

10.1101/426544 — neuroscience — Posted on 2018-09-25

576 Within-subject combination of diffusion tensor MRI and CLARITY reveals alterations in the social brain network resulting from α-neurexin II deletion

Pervolaraki, E.; Tyson, A. L.; Pibiri, F.; Poulter, S. L.; Reichelt, A. C.; Rodgers, R. J.; Clapcote, S. J.; Lever, C.; Andreae, L. C.; Dachtler, J.

10.1101/300806 — neuroscience — Posted on 2018-09-24

577 A frequent variant in the Japanese population determines quasi-Mendelian inheritance of rare retinal ciliopathy

Nikopoulos, K.; Cisarova, K.; Quinodoz, M.; Koskiniemi-Kuendig, H.; Miyake, N.; Farinelli, P.; Rehman, A. U.; Imran Khan, M.; Prunotto, A.; Akiyama, M.; Kamatani, Y.; Terao, C.; Miya, F.; Ikeda, Y.; Ueno, S.; Fuse, N.; Murakami, A.; Terasaki, H.; Sonoda, K.-H.; Ishibashi, T.; Kubo, M.; Cremers, F. P. M.; Kutalik, Z.; Matsumoto, N.; Nishiguchi, K. M.; Nakazawa, T.; Rivolta, C.

10.1101/257634 — genomics — Posted on 2018-09-24

578 Diagnostic algorithms to study post-concussion syndrome using electronic health records: validating a method to capture an important patient population

Dennis, J.; Yengo-Kahn, A.; Kirby, P.; Solomon, G. S.; Cox, N.; Zuckerman, S. L.

10.1101/336560 — epidemiology — Posted on 2018-09-24

579 Adult influence on juvenile phenotypes by stage-specific pheromone production

Werner, M. S.; Claassen, M.; Renahan, T.; Dardiry, M.; Sommer, R. J.

10.1101/291591 — developmental biology — Posted on 2018-09-24

580 HBV vaccination and PMTCT as elimination tools in the presence of HIV: insights from a clinical cohort and dynamic model

McNaughton, A.; Lourenco, J.; Hattingh, L.; Adland, E.; Daniels, S.; van Zyl, A.; Akiror, C. S.; Wareing, S.; Jeffery, K.; Ansari, A.; Klenerman, P.; Goulder, P.; Gupta, S.; Jooste, P.; Matthews, P. C.

10.1101/162594 — microbiology — Posted on 2018-09-24

581 Simulating Pedigrees Ascertained for Multiple Disease-Affected Relatives

Nieuwoudt, C.; Jones, S. J.; Brooks-Wilson, A.; Graham, J.

10.1101/234153 — genetics — Posted on 2018-09-24

582 Long-read based assembly and annotation of a Drosophila simulans genome

Nouhaud, P.

10.1101/425710 — genomics — Posted on 2018-09-24

583 An ATF4-mediated transcriptional adaptation of electron transport chain disturbance primes progenitor cells for proliferation in vivo

Sorge, S.; Theelke, J.; Altburger, C.; Lohmann, I.

10.1101/425744 — developmental biology — Posted on 2018-09-24

584 Vegfa expression is activated through positive and negative transcriptional regulatory networks controlled by the ETS factor Etv6 in vivo

Li, L.; Rispoli, R.; Patient, R.; Ciau-Uitz, A.; Porcher, C.

10.1101/425751 — developmental biology — Posted on 2018-09-24

585 PADI2-mediated citrullination is required for efficient oligodendrocyte differentiation and myelination

Falcao, A. M.; Meijer, M.; Scaglione, A.; Rinwa, P.; Agirre, E.; Liang, J.; Larsen, S. C.; Heskol, A.; Frawley, R.; Klingener, M.; Varas-Godoy, M.; Raposo, A. A. S. F.; Ernfors, P.; Castro, D. S.; Nielsen, M. L.; Casaccia, P.; Castelo-Branco, G.

10.1101/425348 — neuroscience — Posted on 2018-09-24

586 A local measure of symmetry and orientation for individual spikes of grid cells

Weber, S. N.; Sprekeler, H.

10.1101/425637 — neuroscience — Posted on 2018-09-24

587 REC114 partner ANKRD31 controls number, timing and location of meiotic DNA breaks

Boekhout, M.; Karasu, M. E.; Wang, J.; Acquaviva, L.; Pratto, F.; Brick, K.; Eng, D. Y.; Camerini-Otero, R. D.; Patel, D. J.; Keeney, S.

10.1101/425322 — genetics — Posted on 2018-09-24

588 Layer-dependent activity in human prefrontal cortex during working memory

Finn, E. S.; Huber, L.; Jangraw, D. C.; Bandettini, P. A.

10.1101/425249 — neuroscience — Posted on 2018-09-24

589 Indole Pulse Signalling Regulates the Cytoplasmic pH of E. coli in a Memory-Like Manner

Zarkan, A.; Cano-Muniz, S.; Zhu, J.; Al Nahas, K.; Cama, J.; Keyser, U. F.; Summers, D. K.

10.1101/425538 — microbiology — Posted on 2018-09-24

590 Hematopoietic Stem Cell Dynamics are Regulated by Progenitor Demand: Lessons from a Quantitative Modeling Approach

Klose, M.; Florian, M. C.; Geiger, H.; Glauche, I.

10.1101/305367 — systems biology — Posted on 2018-09-24

591 Potassium nutrition recover impacts on stomatal, mesophyll and biochemical limitations to photosynthesis in Carya cathayensis and Hickory illinoensis

Chao, S.; Ruimin, H.; Yiquan, T.; Zhengjia, W.

10.1101/425629 — physiology — Posted on 2018-09-24

592 Emergence and suppression of cooperation by action visibility in transparent games

Unakafov, A. M.; Schultze, T.; Kagan, I.; Moeller, S.; Eule, S.; Wolf, F.

10.1101/314500 — evolutionary biology — Posted on 2018-09-24

593 Assessing precocious maturation in salmon using ultrasound imaging

Nevoux, M.; Marchand, F.; Destouches, J.-P.; Forget, G.; Huteau, D.; Tremblay, J.

10.1101/425561 — ecology — Posted on 2018-09-24

594 Inhibition of cell fate repressors secures the differentiation of the touch receptor neurons of Caenorhabditis elegans

Zheng, C.; Jin, F. Q.; Trippe, B. L.; Wu, J.; Chalfie, M.

10.1101/320978 — developmental biology — Posted on 2018-09-24

595 Differential regional decline in dopamine receptor availability across adulthood: Linear and nonlinear effects of age

Seaman, K. L.; Smith, C. T.; Juarez, E. J.; Dang, L. C.; Castrellon, J. J.; Burgess, f. L.; San Juan, M. D.; Kundzicz, P. M.; Cowan, R. L.; Zald, D. H.; Samanez-Larkin, G.

10.1101/358200 — neuroscience — Posted on 2018-09-24

596 Reciprocal Modulation Between Amyloid Precursor Protein and Synaptic Membrane Cholesterol Revealed By Live Cell Imaging

DelBove, C. E.; Strothman, C. E.; Lazarenko, R. M.; Huang, H.; Sanders, C.; Zhang, Q.

10.1101/328419 — neuroscience — Posted on 2018-09-24

597 A systematic review and standardized clinical validity assessment of male infertility genes

Oud, M. S.; Volozonoka, L.; Smits, R. M.; Vissers, L. E.; Ramos, L.; Veltman, J. A.

10.1101/425553 — genetics — Posted on 2018-09-24

598 Evolutionary dynamics of recent selection for enhanced social cognition

Miller, S. E.; Legan, A. W.; Henshaw, M.; Ostevik, K. L.; Samuk, K.; Uy, F. M. K.; Reeve, H. K.; Sheehan, M. J.

10.1101/425215 — animal behavior and cognition — Posted on 2018-09-24

599 Evidence for metacognitive bias in perception of voluntary action

Charles, L.; Chardin, C.; Haggard, P.

10.1101/423244 — neuroscience — Posted on 2018-09-24

600 Accurate estimation of microbial diversity with Distanced

Hackmann, T.

10.1101/423186 — microbiology — Posted on 2018-09-24

601 Noninvasive prenatal test of methylmalonic academia cblC type through targeted sequencing of cell-free DNA in maternal plasma

Chen, C.; Han, L.; Guo, F.; Ye, J.; Peng, Z.; Wang, Y.; Qiu, W.; Li, W.; Zhang, H.; Liang, L.; Wang, Y.; Wang, H.; Ji, X.; Sun, J.; Gu, X.

10.1101/425918 — genetics — Posted on 2018-09-24

602 Coalescent-based phylogenetic inference from genes with unequivocal historical signal suggests a polytomy at the root of the placental mammal tree of life

Moreira, F. R. R.; Schrago, C. E. G.

10.1101/423996 — evolutionary biology — Posted on 2018-09-24

603 MYCN-induced metabolic rewiring creates novel therapeutic vulnerabilities in neuroblastoma

Tjaden, B.; Baum, K.; Marquardt, V.; Simon, M.; Trajkovic-Arsic, M.; Kouril, T.; Siebers, B.; Lisec, J.; Siveke, J. T.; Schulte, J. H.; Benary, U.; Remke, M.; Wolf, J.; Schramm, A.

10.1101/423756 — cancer biology — Posted on 2018-09-24

604 Middle-way flexible docking: Pose prediction using mixed-resolution Monte Carlo in estrogen receptor α

Spiriti, J.; Subramanian, S. R.; Palli, R.; Wu, M.; Zuckerman, D. M.

10.1101/424952 — biophysics — Posted on 2018-09-24

605 Feature selection for the accurate prediction of septic and cardiogenic shock ICU mortality in the acute phase

Aushev, A.; Ripoll, V. R.; Vellido, A.; Aletti, F.; Pinto, B. B.; Bendjelid, K.; Herpain, A.; Post, E. H.; Medina, E. R.; Ferrer, R.; Baselli, G.

10.1101/337261 — bioinformatics — Posted on 2018-09-24

606 Collection of continuous rotation MicroED Data from Ion Beam Milled Crystals of Any Size

Martynowycz, M.; Zhao, W.; Hattne, J.; Jensen, G.; Gonen, T.

10.1101/425611 — biochemistry — Posted on 2018-09-24

607 Beta and theta oscillations differentially support free versus forced control over multiple-target search

van Driel, J.; Ort, E.; Fahrenfort, J. J.; Olivers, C. N. L.

10.1101/422691 — neuroscience — Posted on 2018-09-24

608 Genetic basis and timing of a major mating system shift in Capsella

Bachmann, J. A.; Tedder, A.; Laenen, B.; Fracassetti, M.; Desamore, A.; Lafon-Placette, C.; Steige, K. A.; Callot, C.; Marande, W.; Neuffer, B.; Berges, H.; Köhler, C.; Castric, V.; Slotte, T.

10.1101/425389 — evolutionary biology — Posted on 2018-09-24

609 Complex responses of global insect pests to climate change

Lehmann, P.; Ammunet, T.; Barton, M.; Battisti, A.; Eigenbrode, S. D.; Jepsen, J. U.; Kalinkat, G.; Neuvonen, S.; Niemela, P.; Okland, B.; Terblanche, J. S.; Bjorkman, C.

10.1101/425488 — ecology — Posted on 2018-09-24

610 The Lineage-Specific Transcription Factor CDX2 Navigates Dynamic Chromatin to Control Distinct Stages of Intestine Development

Kumar, N.; Tsai, Y.-H.; Chen, L.; Zhou, A.; Banerjee, K. J.; Saxena, M.; Huang, S.; Xing, J.; Shivdasani, R. A.; Spence, J. R.; Verzi, M.

10.1101/425827 — developmental biology — Posted on 2018-09-24

611 A theory of centriole duplication based on self-organized spatial pattern formation

Takao, D.; Yamamoto, S.; Kitagawa, D.

10.1101/424754 — cell biology — Posted on 2018-09-24

612 A comprehensive data-driven model of cat primary visual cortex

Antolik, J.; Monier, C.; Davison, A.; Fregnac, Y.

10.1101/416156 — neuroscience — Posted on 2018-09-24

613 The EBI2-oxysterol axis promotes the development of intestinal lymphoid structures and colitis

Wyss, A.; Raselli, T.; Schmelczer, G.; Klinke, G.; Perkins, N.; Hersberger, M.; Spalinger, M. R.; Atrott, K.; Lang, S.; Frey-Wagner, I.; Scharl, M.; Sailer, A. W.; Pabst, O.; Rogler, G.; Misselwitz, B.

10.1101/424937 — immunology — Posted on 2018-09-24

614 Hysteresis in the thermal relaxation dynamics of an immune complex as basis for molecular memory

Stan, R. C.; Camargo, M. M. d.

10.1101/398966 — biophysics — Posted on 2018-09-24

615 phylogenize: a web tool to identify microbial genes underlying environment associations

Bradley, P. H.; Pollard, K. S.

10.1101/425231 — bioinformatics — Posted on 2018-09-24

616 MITO-Tag Mice enable rapid isolation and multimodal profiling of mitochondria from specific cell types in vivo

Bayraktar, E. C.; Baudrier, L.; Ozerdem, C.; Lewis, C. A.; Chen, S. H.; Kunchok, T.; Abu-Remaileh, M.; Cangelosi, A. L.; Sabatini, D. M.; Birsoy, K.; Chen, W. W.

10.1101/425454 — molecular biology — Posted on 2018-09-24

617 A female alternative life-history strategy arose via novel recruitment of homeobox gene, BarH-1

Woronik, A.; Tunstrom, K.; Perry, M. W.; Neethiraj, R.; Stefanescu, C.; de la Paz Celorio-Mancera, M.; Brattstrom, O.; Hill, J.; Lehmann, P.; Kakela, R.; Wheat, C. W.

10.1101/424879 — genomics — Posted on 2018-09-24

618 A First-principles Approach to Large-scale Nuclear Architecture

Agrawal, A.; Ganai, N.; Sengupta, S.; Menon, G. I.

10.1101/315812 — biophysics — Posted on 2018-09-24

619 Illustrating phylogenetic placement of fossils using RoguePlots: An example from ichneumonid parasitoid wasps (Hymenoptera, Ichneumonidae) and an extensive morphological matrix

Klopfstein, S.; Spasojevic, T.

10.1101/425090 — paleontology — Posted on 2018-09-24

620 World Influence of Infectious Diseases from Wikipedia Network Analysis

Rollin, G.; Lages, J.; Shepelyansky, D.

10.1101/424465 — microbiology — Posted on 2018-09-24

621 The design, analysis and application of mouse clinical trials in oncology drug development

Guo, S.; Jiang, X.; Mao, B.; Li, Q.-X.

10.1101/425256 — cancer biology — Posted on 2018-09-24

622 Facial masculinity is only weakly correlated with handgrip strength in young adult women

Hahn, A.; Holzleitner, I. J.; Lee, A. J.; Kandrik, M.; O'Shea, K. J.; DeBruine, L.; Jones, B.

10.1101/425017 — animal behavior and cognition — Posted on 2018-09-24

623 Human confidence judgments reflect reliability-based hierarchical integration of contextual information

Schustek, P.; Moreno-Bote, R.

10.1101/425462 — neuroscience — Posted on 2018-09-24

624 Strategies of host resistance to pathogens in spatially structured populations: An agent-based evaluation.

Boete, C.; Seston, M.; Legros, M.

10.1101/423822 — evolutionary biology — Posted on 2018-09-24

625 Data indicate the importance of expert agencies in conservation policy.

Evans, M. J.; Malcom, J.; Li, Y.-W.

10.1101/424911 — ecology — Posted on 2018-09-24

626 Multidrug-resistant Gram-negative bacteria from patients, hospital environment and healthcare workers: a six-month cross-sectional study

Sereia, A. F. R.; da Cunha, P. A.; Tartari, D. C.; Zamparette, C. P.; Estigarribia, D. A.; Klein, T. C. R.; Masukawa, I. I.; Silva, C. I.; Vieira, M. L. V.; Scheffer, M. C.; Boberg, D. R.; Christoff, A. P.; de Oliveira, L. F. V.; Grisard, E. C.; Sincero, T. C. M.

10.1101/425330 — microbiology — Posted on 2018-09-24

627 A molecular explanation for PP2A-B56 isoform specificity during mitosis

Vallardi, G.; Allan, L. A.; Crozier, L.; Saurin, A. T.

10.1101/425579 — cell biology — Posted on 2018-09-24

628 Precision identification and prediction of high mortality phenotypes and disease progression pathways in severe malaria without requiring longitudinal data

Hoffmann, T.; Johnston, I. G.; Greenbury, S.; Cominetti, O.; Jallow, M.; Kwiatkowski, D.; Barahona, M.; Jones, N. S.; Casals-Pascual, C.

10.1101/425132 — pathology — Posted on 2018-09-24

629 Replication stress induces mitotic death through parallel pathways regulated by WAPL and telomere deprotection

Masamsetti, V. P.; Mak, K. S.; Low, R. R. J.; Riffikin, C. D.; Lamm, N.; Crabbe, L.; Karlseder, J.; Huang, D. C. S.; Hayashi, M. T.; Cesare, A. J.

10.1101/425264 — molecular biology — Posted on 2018-09-24

630 Downregulation of insulin-like growth factor binding protein 5 is involved in intervertebral disc degeneration via the ERK signaling pathway

Chen, Z.; Zhang, W.; Zhang, N.; Zhou, Y.; Hu, G.; Xue, M.; Liu, J.; Li, Y.

10.1101/425272 — molecular biology — Posted on 2018-09-24

631 Cellular senescence is a central response to cytotoxic chemotherapy in high-grade serous ovarian cancer

Calvo, L.; Cheng, S.; Skulimowski, M.; Clement, I.; Portelance, L.; Zhan, Y.; Carmona, E.; Lafontaine, J.; de Ladurantaye, M.; Rahimi, K.; Provencher, D.; Mes-Masson, A.-M.; Rodier, F.

10.1101/425199 — cancer biology — Posted on 2018-09-24

632 Microbiota stability in healthy individuals after single-dose lactulose challenge - a randomized controlled study

Wotzkas, S. Y.; Kreuzer, M.; Maier, L.; Zuend, M.; Schlumberger, M.; Nguyen, B.; Fox, M.; Pohl, D.; Heinrich, H.; Rogler, G.; Biedermann, L.; Scharl, M.; Sunagawa, S.; Hardt, W.-D.; Misselwitz, B.

10.1101/424531 — microbiology — Posted on 2018-09-24

633 Laparoscopic Roux-en-Y gastric bypass profoundly changes gut microbiota compared to laparoscopic sleeve gastrectomy: a metagenomic comparative analysis

Farin, W.; Plaza Onate, F.; Plassais, J.; Bonny, C.; Beglinger, C.; Woelnerhanssen, B.; Nocca, D.; Magoules, F.; Le Chatelier, E.; Pons, N.; Cervino, A. C. L.; Ehrlich, S. D.

10.1101/425074 — microbiology — Posted on 2018-09-24

634 High-throughput targeted long-read single cell sequencing reveals the clonal and transcriptional landscape of lymphocytes

Singh, M.; Al-Eryani, G.; Carswell, S.; Ferguson, J. M.; Blackburn, J.; Barton, K.; Roden, D.; Luciani, F.; Phan, T.; Junankar, S.; Jackson, K.; Goodnow, C. C.; Smith, M. A.; Swarbrick, A.

10.1101/424945 — genomics — Posted on 2018-09-24

635 Trans effects on gene expression can drive omnigenic inheritance

Liu, X.; Li, Y. I.; Pritchard, J. K.

10.1101/425108 — genetics — Posted on 2018-09-24

636 Quantitative modelling explains distinct STAT1 and STAT3 activation dynamics in response to both IFNγ and IL-10 stimuli and predicts emergence of reciprocal signalling at the level of single cells

Sarma, U.; Mukherjee, D.; Maiti, M.; Bhadange, S.; Nair, A.; Srivastava, A.; Saha, B.

10.1101/425868 — systems biology — Posted on 2018-09-24

637 A screen for genes that regulate synaptic growth reveals mechanisms that stabilize synaptic strength

Goel, P.; Khan, M.; Howard, S.; Kiragasi, B.; Kikuma, K.; Dickman, D.

10.1101/425876 — neuroscience — Posted on 2018-09-24

638 An assessment of the interactions between climatic conditions and genetic characteristic on the agricultural performance of soybeans grown in Northeast Asia

Park, M. R.; Cai, C.; Seo, M.-J.; Yun, H.-T.; Park, S.-K.; Choi, M.-S.; Park, C.-H.; Moon, J. K.

10.1101/425801 — plant biology — Posted on 2018-09-24

639 Clinicians management of patients potentially exposed to rabies in high-risk areas in Bhutan: A cross-sectional study

Penjor, K.; Marquetoux, N.; Dorji, C.; Penjor, K.; Dorjee, S.; Dorjee, C.; Jolly, P. D.; Morris, R. S.; McKenzie, J. S.

10.1101/425884 — epidemiology — Posted on 2018-09-24

640 Cell type-specific differences in redox regulation and proliferation after low UVA doses

Ciesielska, S.; Bil, P.; Gajda, K.; Poterala-Hejmo, A.; Hudy, D.; Rzeszowska-Wolny, J.

10.1101/425793 — cell biology — Posted on 2018-09-24

641 Colloidal quantum dots suitability for long term cell imaging

Farias, P. M. A.; Galembeck, A.; Milani, R.; Mendonca, W. S.; Stingl, A.

10.1101/425850 — cancer biology — Posted on 2018-09-24

642 A Fully Automated, Faster Noise Reduction Approach to Increasing the Analytical Capability of Chemical Imaging for Digital Histopathology

Gupta, S.; Mittal, S.; Kajdacsy-Balla, A.; Bhargava, R.; Bajaj, C.

10.1101/425835 — bioinformatics — Posted on 2018-09-24

643 DeepCDpred: Inter-residue Distance and Contact Predictionfor Improved Prediction of Protein Structure.

Ji, S.; Oruc, T.; Mead, L.; Rehman, M. F.; Thomas, C. M.; Butterworth, S.; Winn, P.

10.1101/425785 — bioinformatics — Posted on 2018-09-24

644 Rational Design of Peptide Vaccines for the Highly Lethal Nipah and Hendra Viruses

Dey, S.; Roy, P.; Dutta, T.; Nandy, A.; Basak, S.

10.1101/425819 — bioinformatics — Posted on 2018-09-24

645 Master regulators of signaling pathways coordinate key processes of embryonic development in breast cancer

Hernandez-Lemus, E.; Tapia-Carrillo, D.; Tovar, H.; Velazquez-Caldelas, T. E.

10.1101/425777 — systems biology — Posted on 2018-09-24

646 Generation of human neural retina transcriptome atlas by single cell RNA sequencing

Lukowski, S.; Lo, C.; Sharov, A.; Nguyen, Q.; Fang, L.; Hung, S.; Zhu, L.; Zhang, T.; Nguyen, T.; Senabouth, A.; Jabbari, J.; Welby, E.; Sowden, J.; Waugh, H.; Mackey, A.; Pollock, G.; Lamb, T.; Wang, P.-Y.; Hewitt, A.; Gillies, M.; Powell, J.; Wong, R.

10.1101/425223 — systems biology — Posted on 2018-09-24

647 Microtubule acetylation but not detyrosination promotes focal adhesion dynamics and cell migration

Bance, B.; Seetharaman, S.; Leduc, C.; Boeda, B.; Etienne-Manneville, S.

10.1101/425421 — cell biology — Posted on 2018-09-24

648 Endoglycan plays a role in axon guidance and neuronal migration by negatively regulating cell-cell adhesion

Stoeckli, E. T.; Baeriswyl, T.; Tsapara, G.; Niederkofler, V.; Frei, J. A.; Wilson, N. H.; Gesemann, M.

10.1101/425207 — neuroscience — Posted on 2018-09-24

649 Functional importance of JMY expression by Sertoli cells in mediating mouse spermatogenesis

Liu, Y.; Fan, J.; Yan, Y.; Dang, X.; Zhao, R.; Xu, Y.; Ding, Z.

10.1101/425082 — cell biology — Posted on 2018-09-24

650 Dynamics of contrast decrement and increment responses in human visual cortex

Norcia, A. M.; Yakovleva, A.; Hung, B.; Goldberg, J. L.

10.1101/425173 — neuroscience — Posted on 2018-09-24

651 A female alternative life-history strategy arose via novel recruitment of homeobox gene, BarH-1

Woronik, A.; Tunstrom, K.; Perry, M. W.; Neethiraj, R.; Stefanescu, C.; de la Paz Celorio-Mancera, M.; Brattstrom, O.; Hill, J.; Lehmann, P.; Kakela, R.; Wheat, C. W.

10.1101/424879 — genomics — Posted on 2018-09-24

652 Pathway maps enable straightforward yet customized and semi-automated yet insightful analyses of omics data

Möller, S.; Barrantes, I.; Jaster, R.; Henze, L.; Murua Escobar, H.; Junghanss, C.; Hakenberg, O.; Weber, M.-A.; Krause, B.; Wolkenhauer, O.; Ibrahim, S.; Köhling, R.; Lange, F.; Walter, U.; Hamed, M.; Kowald, A.; Fuellen, G.

10.1101/404525 — genomics — Posted on 2018-09-24

653 Modulation of tissue growth heterogeneity by responses to mechanical stress

Fruleux, A.; Boudaoud, A.

10.1101/425355 — biophysics — Posted on 2018-09-24

654 Changes in mangrove tree mortality, forest canopy, and aboveground biomass accumulation rates following the 2017 hurricane season in Puerto Rico and the role of urbanization

Branoff, B.

10.1101/425140 — ecology — Posted on 2018-09-24

655 Interaction paths promote spliceosome module integration and network-level robustness to cascading effects

Guimaraes, P. R.; Pires, M. M.; Cantor, M.; Coltri, P. P.

10.1101/302570 — molecular biology — Posted on 2018-09-23

656 Bayesian Inference for a Generative Model of Transcriptome Profiles from Single-cell RNA Sequencing

Lopez, R.; Regier, J.; Cole, M. B.; Jordan, M.; Yosef, N.

10.1101/292037 — bioinformatics — Posted on 2018-09-23

657 Software-assisted manual review of clinical NGS data:an alternative to routine Sanger sequencing confirmationwith equivalent results in >15,000 hereditary cancer screens

Muzzey, D.; Kash, S.; Johnson, J. I.; Melroy, L. M.; Kaleta, P.; Pierce, K. A.; Ready, K.; Kang, H. P.; Haas, K. R.

10.1101/305011 — genomics — Posted on 2018-09-23

658 Comparative genomics analyses indicate differential methylated amine utilisation trait within the member of the genus Gemmobacter

Krober, E.; Spurgin, L.; Wischer, D.; Kumaresan, D.

10.1101/356014 — microbiology — Posted on 2018-09-23

659 Intronic CNVs cause gene expression variation in human population

Rigau, M.; Juan, D.; Valencia, A.; Rico, D.

10.1101/171165 — genomics — Posted on 2018-09-23

660 Optimization of Energy State Transition Trajectory Supports the Development of Executive Function During Youth

Cui, Z.; Stiso, J.; Baum, G. L.; Kim, J. Z.; Roalf, D. R.; Betzel, R. F.; Gu, S.; Lu, Z.; Xia, C. H.; Ciric, R.; Moore, T. M.; Shinohara, R. T.; Ruparel, K.; Davatzikos, C.; Pasqualetti, F.; Gur, R. E.; Gur, R. C.; Bassett, D. S.; Satterthwaite, T. D.

10.1101/424929 — neuroscience — Posted on 2018-09-23

661 PGxO and PGxLOD: a reconciliation of pharmacogenomic knowledge of various provenances, enabling further comparison

Monnin, P.; Legrand, J.; Husson, G.; Ringot, P.; Tchechmedjiev, A.; Jonquet, C.; Napoli, A.; Coulet, A.

10.1101/390971 — bioinformatics — Posted on 2018-09-23

662 A data-driven approach to the automated study of cross-species homologies

Pauli, W. M.

10.1101/412114 — neuroscience — Posted on 2018-09-23

663 Stability of working memory in continuous attractor networks under the control of short-term plasticity

Seeholzer, A.; Deger, M.; Gerstner, W.

10.1101/424515 — neuroscience — Posted on 2018-09-23

664 Architecture of a multi-cellular polygenic network governing immune homeostasis

Dubovik, T.; Starosvetsky, E.; LeRoy, B.; Normand, R.; Admon, Y.; Alpert, A.; Ofran, Y.; G'Sell, M.; Shen-Orr, S. S.

10.1101/256073 — genetics — Posted on 2018-09-23

665 Eco-evolutionary community turnover following environmental change

Lasky, J. R.

10.1101/285288 — evolutionary biology — Posted on 2018-09-23

666 Modeling neuronal avalanches and long-range temporal correlations at the emergence of collective oscillations: continuously varying exponents mimic M/EEG results

Dalla Porta, L.; Copelli, M.

10.1101/423921 — neuroscience — Posted on 2018-09-23

667 Covariate Assisted Principal Regression for Covariance Matrix Outcomes

Zhao, Y.; Wang, B.; Mostofsky, S.; Caffo, B.; Luo, X.

10.1101/425033 — neuroscience — Posted on 2018-09-23

668 Associated valence impacts early visual processing of letter strings: Evidence from ERPs in a cross-modal learning paradigm

Bayer, M.; Grass, A.; Schacht, A.

10.1101/234864 — neuroscience — Posted on 2018-09-23

669 Reinforcement targets sexual or postmating prezygotic reproductive barriers depending on species abundance and population history

Poikela, N.; Kinnunen, J.; Wurdack, M.; Kauranen, H.; Schmitt, T.; Kankare, M.; Snook, R. R.; Hoikkala, A.

10.1101/425058 — evolutionary biology — Posted on 2018-09-23

670 Vertical transmission of sponge microbiota is weak and inconsistent

Bjork, J. R.; Astudillo-Garcia, C.; Archie, E.; Montoya, J. M.

10.1101/425009 — ecology — Posted on 2018-09-23

671 The oxysterol synthesizing enzyme CH25H contributes to the development of intestinal fibrosis

Raselli, T.; Wyss, A.; Gonzalez Alvarado, M. N.; Weder, B.; Mamie, C.; Spalinger, M. R.; van Haaften, W. T.; Dijkstra, G.; Sailer, A. W.; Imenez Silva, P. H.; Wagner, C. A.; Tosevski, V.; Leibl, S.; Scharl, M.; Rogler, G.; Hausmann, M.; Misselwitz, B.

10.1101/424820 — immunology — Posted on 2018-09-23

672 Vision using multiple distinct rod opsins in deep-sea fishes

Musilova, Z.; Cortesi, F.; Matschiner, M.; Davies, W. I. L.; Stieb, S. M.; de Busserolles, F.; Malmstroem, M.; Toerresen, O. K.; Mountford, J. K.; Hanel, R.; Jakobsen, K. S. S.; Carleton, K. L.; Jentoft, S.; Marshall, J. N.; Salzburger, W.

10.1101/424895 — evolutionary biology — Posted on 2018-09-23

673 The Evolution of Early-Life Effects on Social Behaviour - Why Should Social Adversity Carry Over to the Future?

Kuijper, B.; Johnstone, R. A.

10.1101/423764 — evolutionary biology — Posted on 2018-09-23

674 The origin and evolution of acetylcholine signaling through AchRs in metazoans

Faltine-Gonzalez, D.; Layden, M. J.

10.1101/424804 — developmental biology — Posted on 2018-09-23

675 5-Hydroxymethylcytosines from Circulating Cell-free DNA as Diagnostic and Prognostic Markers for Hepatocellular Carcinoma

Cai, J.; Chen, L.; Zhang, Z.; Zhang, X.; Lu, X.; Liu, W.; Shi, G.; Ge, Y.; Gao, P.; Yang, Y.; Ke, A.; Xiao, L.; Dong, R.; Zhu, Y.; Yang, X.; Wang, J.; Zhu, T.; Yang, D.; Huang, X.; Sui, C.; Qiu, S.; Shen, F.; Sun, H.; Zhou, W.; Zhou, J.; Nie, J.; Zhang, X.; Chiu, B. C.-H.; Lau, W. Y.; He, C.; Wang, H.; Zhang, W.; Fan, J.

10.1101/424978 — cancer biology — Posted on 2018-09-23

676 Differential medial temporal lobe and default-mode network functional connectivity and morphometric changes in Alzheimers disease

Grajski, K. A.; Bressler, S. L.; Alzheimers Disease Neuroimaging Initiative (ADNI),

10.1101/232165 — neuroscience — Posted on 2018-09-23

677 Optimization of Energy State Transition Trajectory Supports the Development of Executive Function During Youth

10.1101/424929 — neuroscience — Posted on 2018-09-23

678 Topological exploration of artificial neuronal network dynamics

Bardin, J.-B.; Spreemann, G.; Hess, K.

10.1101/424994 — neuroscience — Posted on 2018-09-23

679 Time and space dimensions of gene dosage imbalance of aneuploidies revealed by single cell transcriptomes.

Stamoulis, G.; Garieri, M.; Makrythanasis, P.; Letourneau, A.; Guipponi, M.; Panousis, N.; Sloan-Bena, F.; Falconnet, E.; Ribaux, P.; Borel, C.; Santoni, F. A.; Antonarakis, S. E.

10.1101/424887 — genomics — Posted on 2018-09-23

680 Specific cholesterol binding drives drastic structural alterations in Apolipoprotein A1

Ray, A.; Ghosh, A.; Chakraborty, R.; Upadhyay, S. K.; Maiti, S.; Sengupta, S.; Thukral, L.

10.1101/228627 — biophysics — Posted on 2018-09-23

681 Live Cell Imaging of Bioorthogonally Labelled Proteins Generated With a Single Pyrrolysine tRNA Gene

Aloush, N.; Schvartz, T.; König, A.; Cohen, S.; Brozgol, E.; Tam, B.; Nachmias, D.; Ben-David, O.; Garini, Y.; Elia, N.; Arbely, E.

10.1101/161984 — synthetic biology — Posted on 2018-09-23

682 Genome-wide identification and expression analysis of the FAR gene family in hexaploid wheat (Triticum aestivum L.)

Shi, S.; Chai, G.; Ren, H.; Nan, W.; Wu, H.; Wang, Y.; Li, C.; Wang, Z.

10.1101/424739 — plant biology — Posted on 2018-09-23

683 Multiple C2 domains and Transmembrane region Proteins (MCTPs) tether membranes at plasmodesmata

Brault, M. L.; Petit, J. D.; Immel, F.; Nicolas, W. J.; Brocard, L.; Gaston, A.; Fouche, M.; Hawkins, T. J.; Crowet, J.-M.; Grison, M. S.; Kraner, M.; Alva, V.; Claverol, S.; Deleu, M.; Lins, L.; Tilsner, J.; Bayer, E. E.

10.1101/423905 — plant biology — Posted on 2018-09-23

684 Streptococcus salivarius - a potential salivary biomarker for orofacial granulomatosis and Crohn’s disease?

Goel, R. M.; Prosdocimi, E. M.; Amar, A.; Omar, Y.; Escudier, M. P.; Sanderson, J. D.; Wade, W. G.; Prescott, N.

10.1101/422865 — microbiology — Posted on 2018-09-23

685 Bioinformatic analysis reveals mechanisms underlying parasitoid venom evolution and function

Alvarado, G.; Holland, S. R.; DePerez-Rasmussen, J.; Jarvis, B. A.; Telander, T.; Wagner, N.; Waring, A. L.; Anast, A.; Davis, B.; Frank, A.; Genenbacher, K.; Larson, J.; Mathis, C.; Oates, A. E.; Rhoades, N. A.; Scott, L.; Young, J.; Mortimer, N. T.

10.1101/423343 — genomics — Posted on 2018-09-23

686 GPR17 is an Essential Component of the Negative Feedback Loop of the Sonic Hedgehog Signalling Pathway in Neural Tube Development

Yatsuzuka, A.; Hori, A.; Kadoya, M.; Matsuo-Takasaki, M.; Kondo, T.; Sasai, N.

10.1101/424598 — developmental biology — Posted on 2018-09-23

687 poreTally: run and publish de novo Nanopore assembler benchmarks

de Lannoy, C.; Risse, J.; de Ridder, D.

10.1101/424184 — bioinformatics — Posted on 2018-09-23

688 Carbonic anhydrase network of genes trigger cytosolic pH enabling differentiation from quiescence

Yasin, J. K.; Chaudhary, S.; Verma, N.; Vennila, S.

10.1101/424648 — systems biology — Posted on 2018-09-23

689 Metatranscriptomic and thermodynamic insights into medium-chain fatty acid production using an anaerobic microbiome

Scarborough, M. J.; Lawson, C. E.; Hamilton, J. J.; Donohue, T. J.; Noguera, D. R.

10.1101/424762 — systems biology — Posted on 2018-09-23

690 The R package divDyn for quantifying diversity dynamics using fossil sampling data

Kocsis, A. T.; Reddin, C. J.; Alroy, J.; Kiessling, W.

10.1101/423780 — paleontology — Posted on 2018-09-23

691 Highly Mutable Linker Regions Regulate HIV-1 Rev Function and Stability

Jayaraman, B.; Fernandes, J.; Yang, S.; Smith, C.; Frankel, A. D.

10.1101/424259 — molecular biology — Posted on 2018-09-23

692 Asymmetry in catalysis by Thermotoga maritima membrane-bound pyrophosphatase demonstrated by a non-phosphorous allosteric inhibitor

Vidilaseris, K.; Kiriazis, A.; Turku, A.; Khattab, A.; Johansson, N. G.; Leino, T. O.; Kiuru, P. S.; Boije af Gennäs, G.; Meri, S.; Yli-Kauhaluoma, J.; Xhaard, H.; Goldman, A.

10.1101/423954 — molecular biology — Posted on 2018-09-23

693 Multiplex logic processing isothermal diagnostic assays for an evolving virus

Bhadra, S.; Saldana, M. A.; Han, H. G.; Hughes, G. L.; Ellington, A. D.

10.1101/424440 — molecular biology — Posted on 2018-09-23

694 Protein inference using PIA workflows and PSI standard file formats

Uszkoreit, J.; Perez-Riverol, Y.; Eggers, B.; Marcus, K.; Eisenacher, M.

10.1101/424473 — bioinformatics — Posted on 2018-09-23

695 Functional specialization is independent of microstructural variation in cerebellum but not in cerebral cortex

Guell, X.; Schmahmann, J. D.; Gabrieli, J. D.

10.1101/424176 — neuroscience — Posted on 2018-09-23

696 Synergistic antifungal effect of amphotericin B-loaded PLGA nanoparticles based ultrasound against C. albicans biofilms

Li, D.; Yang, M.; Du, K.; Hou, Y.; Xie, S.; Dong, Y.; Du, Y.

10.1101/423723 — microbiology — Posted on 2018-09-23

697 Variants in the fetal genome near pro-inflammatory cytokine genes on 2q13 are associated with gestational duration

Liu, X.; Helenius, D.; Skotte, L.; Beaumont, R. N.; Wielscher, M.; Geller, F.; Juodakis, J.; Mahajan, A.; Bradfield, J. P.; Lin, F. T. J.; Vogelezang, S.; Bustamante, M.; Ahluwalia, T. S.; Pitkänen, N.; Wang, C. A.; Bacelis, J.; Borges, M. C.; Zhang, G.; Bedell, B. A.; Rossi, R. M.; Skogstrand, K.; Peng, S.; Early Growth Genetics (EGG) Consortium, ; iPSYCH-BROAD Working Group, ; Thompson, W. K.; Appadurai, V.; Lawlor, D. A.; Kalliala, I.; Power, C.; McCarthy, M. I.; Boyd, H. A.; Marazita, M. L.; Hakonarson, H.; Hayes, M. G.; Scholtens, D. M.; Rivadeneira, F.; Jaddoe, V. W. V.; Vinding, R. K

10.1101/423897 — genetics — Posted on 2018-09-23

698 Change in sexual signaling traits outruns morphological divergence in a recent avian radiation across an ecological gradient

Friis, G.; Mila, B.

10.1101/424770 — evolutionary biology — Posted on 2018-09-23

699 Detection of adaptive divergence in populations of the stream mayfly Ephemera strigata with machine learning

Li, B.; Yaegashi, S.; Carvajal, T. M.; Gamboa, M.; Watanabe, K.

10.1101/424085 — evolutionary biology — Posted on 2018-09-23

700 Parliament2: Fast Structural Variant Calling Using Optimized Combinations of Callers

Zarate, S.; Carroll, A.; Krasheninina, O.; Sedlazeck, F. J.; Jun, G.; Salerno, W.; Boerwinkle, E.; Gibbs, R.

10.1101/424267 — bioinformatics — Posted on 2018-09-23

701 Single-cell RNA-seq analysis maps the development of human fetal retina

Lu, Y.; Yi, W.; Wu, Q.; Zhong, S.; Zuo, Z.; Zhao, F.; Zhang, M.; Tsai, N.; Zhuo, Y.; He, S.; Zhang, J.; Duan, X.; Wang, X.; Xue, T.

10.1101/423830 — neuroscience — Posted on 2018-09-23

702 A Sparse Unreliable Distributed Code Underlies the Limits of Behavioral Discrimination

Sriram, B.; Cruz-Martin, A.; Li, L.; Reinagel, P.; Ghosh, A.

10.1101/424713 — neuroscience — Posted on 2018-09-23

703 D.sort: template based automatic spike sorting tool

Belkhiri, M.; Kvitsiani, D.

10.1101/423913 — neuroscience — Posted on 2018-09-23

704 Stability of working memory in continuous attractor networks under the control of short-term plasticity

Seeholzer, A.; Deger, M.; Gerstner, W.

10.1101/424515 — neuroscience — Posted on 2018-09-23

705 Skin microbiome modulation induced by probiotic solutions

Paetzold, B.; Willis, J. R.; Lima, J.; Knodlseder, N.; Quist, S. R.; Gabaldon, T.; Guell, M.

10.1101/423285 — microbiology — Posted on 2018-09-23

706 Sae2 antagonizes Rad9 accumulation at DNA double-strand breaks to attenuate checkpoint signaling and facilitate end resection

Yu, T.-Y.; Kimble, M.; Symington, L. S.

10.1101/424218 — genetics — Posted on 2018-09-23

707 Snail shell colour evolution in urban heat islands detected via citizen science

Kerstes, N.; Breeschoten, T.; Kalkman, V.; Schilthuizen, M.

10.1101/424564 — evolutionary biology — Posted on 2018-09-23

708 How to make a rodent giant: Genomic basis and tradeoffs of gigantism in the capybara, the world’s largest rodent

Herrera-Alvarez, S.; Karlsson, E.; Ryder, O. A.; Lindblad-Toh, K.; Crawford, A. J.

10.1101/424606 — evolutionary biology — Posted on 2018-09-23

709 Cdh2 coordinates Myosin-II dependent internalisation of the zebrafish neural plate

Araya, C.; Hakkinen, H.-M.; Carcamo, L.; Cerda, M.; Savy, T.; Peyrieras, N.; Rookyard, C.; Clarke, J.

10.1101/424705 — developmental biology — Posted on 2018-09-23

710 A theory of centriole duplication based on self-organized spatial pattern formation

Takao, D.; Yamamoto, S.; Kitagawa, D.

10.1101/424754 — cell biology — Posted on 2018-09-23

711 Cell and tissue type independent age-associated DNA methylation changes are not rare but common

Zhu, T.; Zheng, S. C.; Paul, D.; Horvath, S.; Teschendorff, A. E.

10.1101/423616 — bioinformatics — Posted on 2018-09-23

712 SilentMutations (SIM): a tool for analyzing long-range RNA-RNA interactions in viral genomes and structural RNAs

Desiro, D.; Hoelzer, M.; Ibrahim, B.; Marz, M.

10.1101/424002 — bioinformatics — Posted on 2018-09-23

713 Mind the Gap: Identifying What Is Missed When Searching Only the Broad Scope with PubMed Clinical Queries

Sperr, E. V.

10.1101/423111 — scientific communication and education — Posted on 2018-09-23

714 Flavor-Cyber-Agriculture: Optimization of plant metabolites in an open-source control environment through surrogate modeling

Harper, C. B.; Johnson, A. J.; Meyerson, E.; Savas, T. L.; Miikkulainen, R.

10.1101/424226 — plant biology — Posted on 2018-09-23

715 Novel regression methods for metacognition

Kristensen, S. B.; Sandberg, K.; Bibby, B. M.

10.1101/423947 — neuroscience — Posted on 2018-09-23

716 Effects of individuation and grouping on face representations in the visual cortex

Kim, H.; Kim, G.; Lee, S.-H.

10.1101/423749 — neuroscience — Posted on 2018-09-23

717 Characterization of deep neural network features by decodability from human brain activity

Horikawa, T.; Aoki, S. C.; Tsukamoto, M.; Kamitani, Y.

10.1101/424168 — neuroscience — Posted on 2018-09-23

718 YAP activity is necessary and sufficient for basal progenitor abundance and proliferation in the developing neocortex

Kostic, M.; Paridaen, J. T. M. L.; Long, K. R.; Kalebic, N.; Langen, B.; Wimberger, P.; Kawasaki, H.; Namba, T.; Huttner, W. B.

10.1101/416537 — neuroscience — Posted on 2018-09-23

719 Atypically larger variability of resource allocation accounts for visual working memory deficits in schizophrenia

Zhao, Y.; Ran, X.; Zhang, L.; Zhang, R.; Ku, Y.

10.1101/424523 — neuroscience — Posted on 2018-09-23

720 A divergent hepatitis D-like agent in birds

Wille, M.; Netter, H. J.; Littlejohn, M.; Yuen, L.; Shi, M.; Eden, J.-S.; Klaassen, M.; Holmes, E. C.; Hurt, A. C.

10.1101/423707 — molecular biology — Posted on 2018-09-23

721 Cell wall inhibitors increase the accumulation of rifampicin in Mycobacterium tuberculosis

McNeil, M. B.; Chettiar, S.; Awasthi, D.; Parish, T.

10.1101/424309 — microbiology — Posted on 2018-09-23

722 HSV-1 strains circulating in Finland demonstrate uncoupling of geographic and phenotypic variation

Bowen, C. D.; Paavilainen, H.; Renner, D. W.; Palomäki, J.; Lehtinen, J.; Vuorinen, T.; Norberg, P.; Hukkanen, V.; Szpara, M.

10.1101/424408 — microbiology — Posted on 2018-09-23

723 Defining the transcriptional and post-transcriptional landscapes of Mycobacterium smegmatis in aerobic growth and oxygen limitation

Martini, M. C.; Zhou, Y.; Sun, H.; Shell, S. S.

10.1101/423392 — microbiology — Posted on 2018-09-23

724 Bacteria: A novel source for potent mosquito feeding-deterrents

Kajla, M. K.; Barrett-Wilt, G. A.; Paskewitz, S.

10.1101/424788 — microbiology — Posted on 2018-09-23

725 Connexin-43 dependent ATP release mediates macrophage activation during peritonitis

Dosch, M.; Zindel, J.; Jebbawi, F.; Melin, N.; Sanchez-Taltavull, D.; Stroka, D.; Candinas, D.; Beldi, G.

10.1101/424333 — immunology — Posted on 2018-09-23

726 Therapeutic Treatment of Aerosolized Staphylococcal Enterotoxin B in Nonhuman Primates with two Monoclonal Antibodies

Verreault, D.; Ennis, J.; Whaley, K.; Killeen, S.; Karauzum, H.; Aman, J.; Holtsberg, R.; Doyle-Meyers, L.; Didier, P.; Zeitlin, L.; Roy, C. J.

10.1101/424036 — immunology — Posted on 2018-09-23

727 A comprehensive reference transcriptome resource for the Iberian ribbed newt Pleurodeles waltl, an emerging model for developmental and regeneration biology

Matsunami, M.; Suzuki, M.; Haramoto, Y.; Fukui, A.; Inoue, T.; Yamaguchi, K.; Uchiyama, I.; Mori, K.; Tashiro, K.; Ito, Y.; Takeuchi, T.; Suzuki, K.-i. T.; Agata, K.; Shigenobu, S.; Hayashi, T.

10.1101/423699 — genomics — Posted on 2018-09-23

728 A Hybrid de novo Assembly of the Sea Pansy (Renilla muelleri) Genome

Jiang, J.; Quattrini, A. M.; Francis, W. R.; Ryan, J. F.; Rodriguez, E.; McFadden, C. S.

10.1101/424614 — genomics — Posted on 2018-09-23

729 A systematic review and meta-analysis of the human blood index of the major African malaria vectors

Orsborne, J.; Furuya-Kanamori, L.; Jeffries, C.; Kristan, M.; Mohammed, A.; Afrane, Y.; O'Reilly, K.; Massad, E.; Drakeley, C.; Walker, T.; Yakob, L.

10.1101/424093 — ecology — Posted on 2018-09-23

730 Extinction times in diffusive public good population dynamics

Kimmel, G.; Gerlee, P.; Altrock, P.

10.1101/424580 — ecology — Posted on 2018-09-23

731 Genome-Wide Associations with Resistance to Bipolaris Leaf Spot (Bipolaris oryzae (Breda de Haan) Shoemaker) in a Northern Switchgrass Population (Panicum virgatum)

Songsomboon, K.; Crawford, R.; Crawford, J.; Hansen, J.; Mattson, N.; Bergstrom, G.; Viands, D.

10.1101/424721 — bioinformatics — Posted on 2018-09-23

732 Novel deleterious nsSNPs within MEFV gene that could be used as Diagnostic Markers to Predict Hereditary Familial Mediterranean Fever: Using bioinformatics analysis

Mustafa, M. I.; Abdelhameed, T.; Abdelrhman, F.; Osman, S.; Hassan, M.

10.1101/424796 — bioinformatics — Posted on 2018-09-23

733 Hormonal balance finely tunes dormancy status in sweet cherry flower buds

Vimont, N.; Schwarzenberg, A.; Domijan, M.; Beauvieux, R.; Arkoun, M.; Yvin, J.-C.; Cortijo, S.; Wigge, P. A.; Dirlewanger, E.; Wenden, B.

10.1101/423871 — plant biology — Posted on 2018-09-23

734 Biophysical model of axonal stimulation in epiretinal visual prostheses

Beyeler, M.

10.1101/424622 — neuroscience — Posted on 2018-09-23

735 An Amyloid beta-derived Septapeptide has hMCP-1 Chemokine Activity

Vanalstyne, D.

10.1101/424838 — neuroscience — Posted on 2018-09-23

736 Influence of prior beliefs on perception in early psychosis: effects of illness stage and hierarchical level of belief

Haarsma, J.; Knolle, F.; Griffin, J.; Taverne, H.; Mada, M.; Goodyer, I.; Neuroscience in Psychiatry Network, ; Fletcher, P.; Murray, G.

10.1101/421891 — neuroscience — Posted on 2018-09-23

737 Calculating the Mutual Information Between Two Spike Trains

Houghton, C. J.

10.1101/423608 — neuroscience — Posted on 2018-09-23

738 An exploration of Prevotella-rich microbiomes in HIV and men who have sex with men

Armstrong, A. J.; Shaffer, M.; Nusbacher, N. M.; Griesmer, C.; Fiorillo, S.; Schneider, J. M.; Neff, C. P.; Li, S. X.; Fontenot, A. P.; Campbell, T.; Palmer, B. E.; Lozupone, C. A.

10.1101/424291 — microbiology — Posted on 2018-09-23

739 The C. elegans CHP1 homolog, pbo-1, functions in innate immunity by regulating the pH of the intestinal lumen

Benomar, S.; Bender, A. M.; Peterson, B. R.; Ackley, B. D.; Chandler, J. R.

10.1101/424382 — microbiology — Posted on 2018-09-23

740 Coculturing bacteria leads to reduced phenotypic heterogeneities

Heyse, J.; Buysschaert, B.; Props, R.; Rubbens, P.; Skirtach, A.; Waegeman, W.; Boon, N.

10.1101/423715 — microbiology — Posted on 2018-09-23

741 Bioprospecting the solar panel microbiome: high-throughput screening for antioxidant bacteria in a Caenorhabditis elegans model

Kristie, T.; Martorell, P.; Genoves, S.; Ramon, D.; Zacarias, L.; Rodrigo, M. J.; Pereto, J.; Porcar, M.

10.1101/423731 — microbiology — Posted on 2018-09-23

742 Revealing multi-scale population structure in large cohorts

Diaz-Papkovich, A.; Anderson-Trocme, L.; Gravel, S.

10.1101/423632 — genomics — Posted on 2018-09-23

743 Discovery and characterization of variance QTLs in human induced pluripotent stem cells

Sarkar, A. K.; Tung, P.-Y.; Blischak, J. D.; Burnett, J. E.; Li, Y. I.; Stephens, M.; Gilad, Y.

10.1101/424192 — genomics — Posted on 2018-09-23

744 Complex interactions between local adaptation, plasticity, and sex affect vulnerability to warming in a widespread marine copepod

Sasaki, M. C.; Hedberg, S.; Richardson, K.; Dam, H. G.

10.1101/423624 — evolutionary biology — Posted on 2018-09-23

745 A comparative study of ‘safe and just operating space’ for the south and south-east Asian countries

Roy, A.; Pramanick, K.

10.1101/424200 — ecology — Posted on 2018-09-23

746 Species activity promote the stability of fruit-frugivore interactions across a five-year multilayer network

Costa, J. M.; Ramos, J. A.; Timoteo, S.; da Silva, L. P.; Ceia, R. S.; Heleno, R. H.

10.1101/421941 — ecology — Posted on 2018-09-23

747 Assessing the blood-host plasticity and dispersal rate of the malaria vector Anopheles coluzzii

Orsborne, J.; Furuya-Kanamori, L.; Jeffries, C.; Kristan, M.; Mohammed, A.; Afrane, Y.; O'Reilly, K.; Massad, E.; Drakeley, C.; Walker, T.; Yakob, L.

10.1101/424051 — ecology — Posted on 2018-09-23

748 When do shifts in trait dynamics precede population declines?

Baruah, G.; Clements, C. F.; Guillaume, F.; Ozgul, A.

10.1101/424671 — ecology — Posted on 2018-09-23

749 Effects of two centuries of global environmental variation on phenology and physiology of Arabidopsis thaliana

DeLeo, V. L.; Menge, D. N. L.; Hanks, E. M.; Juenger, T. E.; Lasky, J. R.

10.1101/424242 — ecology — Posted on 2018-09-23

750 Effects of zooplankton carcasses degradation on freshwater bacterial community composition and implications for carbon cycling

Kolmakova, O. V.; Gladyshev, M. I.; Fonvielle, J. A.; Ganzert, L.; Hornick, T.; Grossart, H.-P.

10.1101/423772 — ecology — Posted on 2018-09-23

751 Structural sequence evolution and Computational Modeling Approaches of the Complement System in Leishmaniasis

Singh, S.; Kabra, R.; Ingale, P.

10.1101/423855 — bioinformatics — Posted on 2018-09-23

752 Towards zero-latency neurofeedback

Smetanin, N.; Lebedev, M.; Ossadtchi, A.

10.1101/424846 — bioinformatics — Posted on 2018-09-23

753 Muscle mechanics and energy expenditure of the triceps surae during rearfoot and forefoot running

Gruber, A.; Umberger, B. R.; Miller, R. H.; Hamill, J.

10.1101/424853 — bioengineering — Posted on 2018-09-23

754 Neural circuit repair by low-intensity magnetic stimulation requires cryptochrome

Dufor, T.; Grehl, S.; Tang, A. D.; Doulazmi, M.; Traore, M.; Debray, N.; Dubacq, C.; Deng, Z.-D.; Mariani, J.; Lohof, A. M.; Sherrard, R. M.

10.1101/424317 — neuroscience — Posted on 2018-09-23

755 Discovery of novel thrips vector proteins that bind to the plant bunyavirus, tomato spotted wilt virus.

Badillo-Vargas, I. E.; Chen, Y.; Martin, K. M.; Rotenberg, D.; Whitfield, A. E.

10.1101/416560 — microbiology — Posted on 2018-09-23

756 Single Molecule Visualization of Cardiac Myosin-Binding Protein C N-terminal Fragments Interacting with Thin Filaments: Mechanisms of Calcium Sensitization

Inchingolo, A. V.; Previs, S. E.; Previs, M. J.; Warshaw, D. M.; Kad, N. M.

10.1101/421776 — biophysics — Posted on 2018-09-23

757 Vascular brassinosteroid receptors confer drought resistance without penalizing plant growth

10.1101/318287 — plant biology — Posted on 2018-09-18

758 A Novel Method for the Capture-based Purification of Whole Viral Native RNA Genomes

Tan, C. C. S.; Maurer-Stroh, S.; Wan, Y.; Sessions, O. M.; de Sessions, P. F.

10.1101/410282 — genomics — Posted on 2018-09-22

759 Synergy with TGFβ ligands switches WNT pathway dynamics from transient to sustained during human pluripotent cell differentiation

Massey, J.; Liu, Y.; Alvarenga, O.; Saez, T.; Schmerer, M.; Warmflash, A.

10.1101/406306 — developmental biology — Posted on 2018-09-22

760 Gpr63 is a novel modifier of microcephaly in Ttc21b mouse mutants.

Snedeker, J.; Gibbons, W. J.; Prows, D. R.; Stottmann, R.

10.1101/424341 — developmental biology — Posted on 2018-09-22

761 Dietary fatty acids promote lipid droplet diversity through seipin enrichment in an ER subdomain

Cao, Z.; Hao, Y.; Lee, Y. Y.; Wang, P.; Li, X.; Xie, K.; Lam, W. J.; Qiu, Y.; Shui, G.; Liu, P.; Qu, J.; Kang, B.-H.; Mak, H. Y.

10.1101/424663 — cell biology — Posted on 2018-09-22

762 cellHarmony: Cell-level matching and comparison of single-cell transcriptomes

DePasquale, E. A.; Ferchen, K.; Hay, S.; Muench, D. E.; Grimes, H. L.; Salomonis, N.

10.1101/412080 — bioinformatics — Posted on 2018-09-22

763 Local adaptation to water-deficit and light limitation suggested from genomic and ecophysiological approaches in a coastal habitat-forming tree

Cruz, M. V.; Mori, G. M.; Müller, C. S.; Silva, C. C.; Oh, D.-H.; Dassanayake, M.; Zucchi, M. I.; Oliveira, R. S.; de Souza, A.

10.1101/378612 — plant biology — Posted on 2018-09-22

764 Nuclear receptor HNF4A trans-represses CLOCK:BMAL1 and acts as a core component of tissue-specific circadian networks

Qu, M.; Duffy, T.; Hirota, T.; Kay, S. A.

10.1101/424556 — molecular biology — Posted on 2018-09-22

765 Gene expression profiling of The Cancer Genome Atlas supports an inverse association between body mass index (BMI) and major oesophageal tumour subtypes

Seim, I.; Jeffery, P. L.; Chopin, L. K.

10.1101/378778 — genetics — Posted on 2018-09-22

766 Penetration Assessment of Dietary Supplements and Drugs through the Blood-Brain Barrier for Potential Treatment of Parkinson ‘s Disease

Chevalier, R.

10.1101/362541 — neuroscience — Posted on 2018-09-22

767 Detection of shared balancing selection in the absence of trans-species polymorphism

Cheng, X.; DeGiorgio, M.

10.1101/320390 — evolutionary biology — Posted on 2018-09-22

768 Can the presence of neural probes be neglected in computational modeling of extracellular potentials?

Buccino, A.; Kuchta, M.; Jaeger, K.; Ness, T.; Mardal, K.-A.; Cauwenberghs, G.; Tveito, A.

10.1101/318741 — bioengineering — Posted on 2018-09-22

769 Antibiotic-induced cell chaining triggers pneumococcal competence by reshaping quorum sensing to autocrine-like signaling

Domenech, A.; Slager, J.; Veening, J.-W.

10.1101/284125 — microbiology — Posted on 2018-09-22

770 Identification of the targets of T cell receptor therapeutic agents and cells by use of a high throughput genetic platform

Gejman, R. S.; Jones, H. F.; Klatt, M. G.; Chang, A. Y.; Oh, C. Y.; Chandran, S. S.; Korontsvit, T.; Zakahleva, V.; Dao, T.; Klebanoff, C. A.; Scheinberg, D. A.

10.1101/267047 — cancer biology — Posted on 2018-09-22

771 Theory of cytoskeletal reorganization during crosslinker-mediated mitotic spindle assembly

Lamson, A.; Edelmaier, C.; Glaser, M. A.; Betterton, M.

10.1101/419135 — cell biology — Posted on 2018-09-22

772 Narrow equilibrium window for complex coacervation of tau and RNA under cellular conditions

Lin, Y.; McCarty, J.; Rauch, J. N.; Delaney, K. T.; Kosik, K. S.; Fredrickson, G. H.; Shea, J.-E.; Han, S.

10.1101/424358 — biophysics — Posted on 2018-09-22

773 Microtubules Gate Tau Condensation to Spatially Regulate Microtubule Functions

Tan, R.; Lam, A.; Tan, T.; Han, J.; Nowakowski, D. W.; Vershinin, M.; Simo, S.; Ori-McKenney, K. M.; McKenney, R. J.

10.1101/423376 — biophysics — Posted on 2018-09-22

774 Notch signalling maintains Hedgehog responsiveness via a Gli-dependent mechanism during spinal cord patterning in zebrafish

Jacobs, C. T.; Huang, P.

10.1101/423681 — developmental biology — Posted on 2018-09-22

775 TSLP-mediated inflammatory factors production contributes to metastatic breast cancer-induced bone cancer pain in mice

Yang, L.; Chen, Y.; Xian, P.-F.; Wang, S.-X.

10.1101/423673 — cancer biology — Posted on 2018-09-22

776 Kinetically distinct phases of tau on microtubules regulate kinesin motors and severing enzymes

Siahaan, V.; Krattenmacher, J.; Hernandez-Vega, A.; Hyman, A. A.; Diez, S.; Lansky, Z.; Braun, M.

10.1101/424374 — biophysics — Posted on 2018-09-22

777 Filament extensibility and shear stiffening control persistence of strain and loss of coherence in cross-linked motor-filament assemblies

Gopinath, A.; Chelakkot, R.; Mahadevan, L.

10.1101/423582 — biophysics — Posted on 2018-09-22

778 Elimination of ribosome inactivating factors improves the efficiency of Bacillus subtilis and Saccharomyces cerevisiae cell-free translational systems

Brodiazhenko, T.; Johansson, M.; Takada, H.; Nissan, T.; Hauryliuk, V.; Murina, V.

10.1101/424044 — biochemistry — Posted on 2018-09-22

779 Effects of altering histone post-translational modifications on mitotic chromosome structure and mechanics

Biggs, R.; Stephens, A. D.; Liu, P.; Marko, J. F.

10.1101/423541 — cell biology — Posted on 2018-09-22

780 GenEpi: Gene-based Epistasis Discovery Using Machine Learning

Chang, Y.-C.; Wu, J.-T.; Hong, M.-Y.; Tung, Y.-A.; Hsieh, P.-H.; Yee, S. W.; Giacomini, K. M.; Oyang, Y.-J.; CHEN, C.-Y.; Alzheimer's Disease Neuroimaging Initiative,

10.1101/421719 — bioinformatics — Posted on 2018-09-21

781 Genome location dictates the transcriptional response to PolC-inhibition in Clostridium difficile

van Eijk, E.; Boekhoud, I. M.; Kuijper, E. J.; Bos-Sanders, I. M. J. G.; Wright, G.; Smits, W. K.

10.1101/362137 — microbiology — Posted on 2018-09-21

782 Characterization of fluorescent proteins, promoters, and selectable markers for applications in the Lyme disease spirochete Borrelia burgdorferi

Takacs, C. N.; Kloos, Z. A.; Scott, M.; Rosa, P. A.; Jacobs-Wagner, C.

10.1101/363390 — microbiology — Posted on 2018-09-21

783 Individual selection leads to collective efficiency through coordination

Bernard, A.; Bredeche, N.; Andre, J.-B.

10.1101/422287 — evolutionary biology — Posted on 2018-09-21

784 Monte-Carlo Diffusion-Enhanced Photon Inference: Distance Distributions And Conformational Dynamics In single-Molecule FRET

Ingargiola, A.; Weiss, S.; Lerner, E.

10.1101/385252 — biophysics — Posted on 2018-09-21

785 A Persistence Detector for Metabolic Network Rewiring in an Animal

Bulcha, J. T.; Giese, G. E.; Ali, M. Z.; Lee, Y.-U.; Walker, M. D.; Holdorf, A. D.; Yilmaz, L. S.; Brewster, R. C.; Walhout, A. J.

10.1101/382507 — systems biology — Posted on 2018-09-21

786 Drug Combinations targeting multiple cellular mechanisms enable axonal regeneration from crushed optic nerve into the brain

Siddiq, M. M.; Zorina, Y.; Yadaw, A.; Hansen, J.; Rabinovich, V.; Gregorich, S. M.; Xiong, Y.; Tolentino, R. E.; Hannila, S. S.; Kaplan, E.; Blitzer, R. D.; Filbin, M. T.; Passaglia, C. L.; Iyengar, R.

10.1101/157099 — neuroscience — Posted on 2018-09-21

787 Dispersal routes of marine range expansions into the Arctic

Andrews, A. J.; Christiansen, J. S.; Bhat, S.; Lynghammar, A.; Westgaard, J.-I.; Pampoulie, C.; Praebel, K.

10.1101/394346 — ecology — Posted on 2018-09-21

788 The Histone Demethylase KDM4D Promotes Hepatic Fibrogenesis by Modulating Toll-Like Receptor 4 Signaling Pathway

Dong, F.; Jiang, S.; Li, J.; Wang, Y.; Zhu, L.; Hu, X.; Huang, Y.; Jiang, X.; Zhou, Q.; Zhang, Z.; Bao, Z.

10.1101/413245 — cell biology — Posted on 2018-09-21

789 Comprehensive modeling of Spinal Muscular Atrophy in Drosophila melanogaster

Spring, A. M.; Raimer, A. C.; Hamilton, C. D.; Schillinger, M. J.; Matera, A. G.

10.1101/394908 — neuroscience — Posted on 2018-09-21

790 Modeling second-order boundary perception: A machine learning approach

DiMattina, C.; Baker, C. L.

10.1101/369041 — neuroscience — Posted on 2018-09-21

791 Dissecting heterogeneous cell-populations across signaling and disease conditions with PopAlign

Chen, S.; Park, J. H.; Rivaud, P.; Charles, E.; Haliburton, J.; Pichiorri, F.; Thomson, M.

10.1101/421354 — bioinformatics — Posted on 2018-09-21

792 A multi-scale model reveals cellular and physiological mechanisms underlying hyperpolarisation-gated synaptic plasticity

Xie, Y.; Kazmierczyk, M.; Graham, B. P.; Dutia, M. B.; Stefan, M. I.

10.1101/418228 — neuroscience — Posted on 2018-09-21

793 Proximity sensors reveal social information transfer in maternity colonies of Common noctule bats

Ripperger, S.; Guenther, L.; Wieser, H.; Duda, N.; Hierold, M.; Cassens, B.; Kapitza, R.; Koelpin, A.; Mayer, F.

10.1101/421974 — animal behavior and cognition — Posted on 2018-09-21

794 Transsynaptic interactions between IgSF proteins DIP-α and Dpr10 are required for motor neuron targeting specificity in Drosophila

Ashley, J.; Sorrentino, V.; Nagarkar-Jaiswal, S.; Tan, L.; Xu, S.; Xiao, Q.; Zinn, K.; Carrillo, R. A.

10.1101/424416 — neuroscience — Posted on 2018-09-21

795 A specific Ret receptor isoform is required for pioneer axon outgrowth and growth cone dynamics

Tuttle, A. M.; Drerup, C. M.; Marra, M. H.; Nechiporuk, A. V.

10.1101/424432 — developmental biology — Posted on 2018-09-21

796 Morning and Evening Circadian Pacemakers Independently Drive Premotor Centers via a Specific Dopamine Relay

Liang, X.; Ho, M. C. W.; Wu, M. N.; Holy, T. E.; Taghert, P. H.

10.1101/424499 — neuroscience — Posted on 2018-09-21

797 Distinct profiles of temporal and frontoparietal cortex in representing actions across vision and language

Wurm, M.; Caramazza, A.

10.1101/361220 — neuroscience — Posted on 2018-09-21

798 Synchrotron FTIR and Raman spectroscopy provide unique spectral fingerprints for Arabidopsis floral stem vascular tissues

Dinant, S.; Wolff, N.; De Marco, F.; Vilaine, F.; Gissot, L.; Aubry, E.; Sandt, C.; Bellini, C.; Le Hir, R.

10.1101/343343 — plant biology — Posted on 2018-09-21

799 Nucleus reuniens is required for encoding and retrieving precise, hippocampal-dependent contextual fear memories in rats

Ramanathan, K. R.; Ressler, R. L.; Jin, J.; Maren, S.

10.1101/340190 — neuroscience — Posted on 2018-09-21

800 Palaeobiological inferences based on long bone epiphyseal and diaphyseal structure - the forelimb of xenarthrans (Mammalia)

Amson, E.; Nyakatura, J. A.

10.1101/318121 — paleontology — Posted on 2018-09-21

801 Automated Summarisation of SDOCT Volumes using Deep Learning: Transfer Learning vs de novo Trained Networks

Antony, B. J.; Maetschke, S.; Garnavi, R.

10.1101/424507 — bioengineering — Posted on 2018-09-21

802 I judge you by your profit: Judgments of effort exerted by self and others are influenced by task contingent rewards

Rollwage, M.; Pannach, F.; Stinson, C.; Toelch, U.; Kagan, I.; Pooresmaeili, A.

10.1101/253138 — neuroscience — Posted on 2018-09-21

803 Statistical Methods for Profiling 3-Dimensional Chromatin Interactions from Repetitive Regions of Genomes

Zheng, Y.; Ay, F.; Keles, S.

10.1101/301705 — bioinformatics — Posted on 2018-09-21

804 Role of interaction network topology in controlling microbial population in consortia

Ren, X.; Murray, R. M.

10.1101/288142 — synthetic biology — Posted on 2018-09-21

805 Uncertainty in contextual and kinematic cues jointly modulate motor resonance in primary motor cortex

Cretu, A.; Ruddy, K.; Germann, M.; Wenderoth, N.

10.1101/293977 — neuroscience — Posted on 2018-09-21

806 Flax latitudinal adaptation at LuTFL1 altered architecture and promoted fiber production.

Gutaker, R.; Zaidem, M.; Fu, Y.-B.; Diederichsen, A.; Smith, O.; Ware, R.; Allaby, R. G.

10.1101/178772 — evolutionary biology — Posted on 2018-09-21

807 Flexible statistical methods for estimating and testing effects in genomic studies with multiple conditions

Urbut, S. M.; Wang, G.; Carbonetto, P.; Stephens, M.

10.1101/096552 — genomics — Posted on 2018-09-21

808 Neurochemical correlates of scene processing in the precuneus/posterior cingulate cortex: a multimodal fMRI and 1H-MRS study

Costigan, A. G.; Umla-Runge, K.; Evans, C. J.; Hodgetts, C. J.; Lawrence, A. D.; Graham, K. S.

10.1101/422758 — neuroscience — Posted on 2018-09-21

809 Disruptions in White Matter Maturation and Mediation of Cognitive Development in Youth on the Psychosis Spectrum

Hegarty, C. E.; Jolles, D.; Mennigen, E.; Jalbrzikowski, M.; Bearden, C.; Karlsgodt, K. H.

10.1101/423574 — neuroscience — Posted on 2018-09-21

810 A Cortico- Basal Ganglia Model for choosing an optimal rehabilitation strategy in Hemiparetic Stroke

Chakravarthy, S.; Muralidharan, V.; Narayanamurthy, R.; Jayakumar, S.; Elango, S.

10.1101/423863 — neuroscience — Posted on 2018-09-21

811 Optimisation and validation of hydrogel-based brain tissue clearing shows uniform expansion across anatomical regions and spatial scales

Tyson, A. L.; Akhtar, A.; Andreae, L. C.

10.1101/423848 — neuroscience — Posted on 2018-09-21

812 EXOSOME RELEASE PROMOTES INFLAMMATORY RESOLUTION IN ACTIVATED AND AGED MICROGLIA

Udeochu, J. C.; Sanchez-Diaz, C.; Cai, A.; Jovicic, A.; Villeda, S. A.

10.1101/423558 — neuroscience — Posted on 2018-09-21

813 A novel method for comparison of arterial remodeling in hypertension: quantification of arterial trees and recognition of remodeling patterns on histological sections

Gutsol, A.; Blanco, P.; Samokhina, S.; Afanasiev, S.; Kennedy, C.; Popov, S.; Burns, K.

10.1101/424119 — pathology — Posted on 2018-09-21

814 Characterizing changes in glucocorticoid receptor internalization in the fear circuit in an animal model of post traumatic stress disorder

Moulton, E.; Chamness, M.; Knox, D.

10.1101/424101 — neuroscience — Posted on 2018-09-21

815 Microstimulation in a spiking neural network model of the midbrain superior colliculus

Van Opstal, A. J.; Kasap, B.

10.1101/424127 — neuroscience — Posted on 2018-09-21

816 A collective modulatory basis for multisensory integration in C. elegans

Harris, G.; Wu, T.; Linfield, G.; Choi, M.-K.; Liu, H.; Zhang, Y.

10.1101/424135 — neuroscience — Posted on 2018-09-21

817 The bunyavirus nonstructural protein NSs suppresses plant immunity to facilitate its own transmission by improving vector insect performance

Wu, X.; Xu, S.; Zhao, P.; Yao, X.; Sun, Y.; Fang, R.-X.; Ye, J.

10.1101/424143 — microbiology — Posted on 2018-09-21

818 The Population Genetic Variation Analysis of Bitter Gourd Wilt Caused by Fusarium oxysporum f. sp. momordicae in China by Inter Simple Sequence Repeats (ISSR) Molecular Marker

Zang, R.; Zhao, Y.; Guo, K.; Hong, K.; Xi, H.; Wen, C.; Rui Zang Ying ZhaoKangdi Guo Kunqi HongHuijun Xi Caiyi Wen,

10.1101/424077 — microbiology — Posted on 2018-09-21

819 New method for runoff estimation under different soil management practices

BASHAGALUKE, J. B.; LOGAH, V.; OPOKU, A.; TUFFOUR, H. O.; SARKODIE-ADDO, J.; QUANSAH, C.

10.1101/424069 — ecology — Posted on 2018-09-21

820 Weak spatiotemporal response of prey to predation risk in a freely interacting system

Cusack, J.; Kohl, M. T.; Metz, M. C.; Coulson, T.; Stahler, D. R.; Smith, D. W.; MacNulty, D. R.

10.1101/215475 — ecology — Posted on 2018-09-21

821 Characterization of the olfactory system in Apis dorsata, an Asian honey bee

Mogily, S.; VijayKumar, M.; Sethy, S. K.; Joseph, J.

10.1101/420968 — neuroscience — Posted on 2018-09-21

822 A non-canonical JAGGED1 signal to JAK2 mediates osteoblast commitment in cranial neural crest cells

Kamalakar, A.; Oh, M. S.; Stephenson, Y. C.; Ballestas-Naissir, S. A.; Davis, M. E.; Willett, N. J.; Drissi, H. M.; Goudy, S. L.

10.1101/421305 — molecular biology — Posted on 2018-09-21

823 Split-miniSOG for detecting and localizing intracellular protein-protein interactions: application to correlated light and electron microscopy

BOASSA, D.; Lemieux, S. P.; Lev-Ram, V.; Hu, J.; Xiong, Q.; Phan, S.; Mackey, M.; Ramachandra, R.; Adams, S. R.; Tsien, R. Y.; Ellisman, M. H.; Ngo, J. T.

10.1101/423566 — cell biology — Posted on 2018-09-21

824 Combating viral contaminants in CHO cells by engineering STAT1 mediated innate immunity

Chiang, A. W. T.; Li, S.; Kellman, B. P.; Chattopadhyay, G.; Zhang, Y.; Kuo, C.-C.; Gutierrez, J. M.; Ghazi, F.; Schmeisser, H.; Menard, P.; Petersen Bjorn, S.; Voldborg, B. G.; Rosenberg, A. S.; Puig, M.; Lewis, N. E.

10.1101/423590 — bioengineering — Posted on 2018-09-21

825 Dissociating refreshing and elaboration by their neural signatures and their effects on memory in young and old adults

Bartsch, L. M.; Loaiza, V. M.; Jäncke, L.; Oberauer, K.; Lewis-Peacock, J.

10.1101/423277 — neuroscience — Posted on 2018-09-21

826 Conversion of graded presynaptic climbing fiber activity into graded postsynaptic Ca2+ signals by Purkinje cell dendrites

Gaffield, M. A.; Christie, J. M.

10.1101/423491 — neuroscience — Posted on 2018-09-21

827 Evolution of pathogen traits in response to quantitative host resistance in heterogeneous environments

Djidjou-Demasse, R.; Lion, S.; Ducrot, A.; Burie, J.-B.; Fabre, F.

10.1101/423467 — evolutionary biology — Posted on 2018-09-21

828 Towards an applied metaecology

Schiesari, L.; Matias, M. G.; Prado, P. I.; Leibold, M. A.; Albert, C. H.; Howeth, J. G.; Leroux, S. J.; Pardini, R.; Siqueira, T.; Brancalion, P. H. S.; Cabeza, M.; Mendes Coutinho, R.; Felizola Diniz-Filho, J. A.; Fournier, B.; Lahr, D. J. G.; Lewinsohn, T. M.; Martins, A.; Morsello, C.; Peres-Neto, P. R.; Pillar, V. D. P.; Vazquez, D. P.

10.1101/422501 — ecology — Posted on 2018-09-21

829 Identification of differentially methylated cell-types in Epigenome-Wide Association Studies

Zheng, S. C.; Breeze, C. E.; Beck, S.; Teschendorff, A.

10.1101/421966 — bioinformatics — Posted on 2018-09-21

830 High rates of apoptosis visualized in the symbiont-bearing gills of deep-sea Bathymodiolus mussels

Piquet, B.; Shillito, B.; Lallier, F. H.; Duperron, S.; Andersen, A. C.

10.1101/422840 — zoology — Posted on 2018-09-21

831 Patient-specific logic models of signaling pathways from screenings on cancer biopsies to prioritize personalized combination therapies

Eduati, F.; Jaaks, P.; Merten, C. A.; Garnett, M. J.; Saez-Rodriguez, J.

10.1101/422998 — systems biology — Posted on 2018-09-21

832 Computational framework for exploring the interplay of diet and gut microbiota in autism

Palukuri, M. V.; Shivakumar, S.; Sahoo, S.; Rengaswamy, R.

10.1101/422931 — systems biology — Posted on 2018-09-21

833 Inhibition of nucleotide synthesis mediates replicative senescence of human mammary epithelial cells

Delfarah, A.; Parrish, S.; Yang, J.; Seo, F.; Li, S.; Wang, P.; Graham, N.

10.1101/423665 — systems biology — Posted on 2018-09-21

834 A phylogenetic framework of the legume genus Aeschynomene for comparative genetic analysis of the Nod-dependent and Nod-independent symbioses

Brottier, L.; Chaintreuil, C.; Simion, P.; Scornavacca, C.; Rivallan, R.; Mournet, P.; Moulin, L.; Lewis, G. P.; Fardoux, J.; Brown, S. C.; Gomez-Pacheco, M.; Bourges, M.; Hervouet, C.; Gueye, M.; Duponnois, R.; Ramanankierana, H.; Randriambanona, H.; Vandrot, H.; Zabaleta, M.; DasGupta, M.; d'Hont, A.; Giraud, E.; Arrighi, J.-F.

10.1101/422956 — plant biology — Posted on 2018-09-21

835 Comparison of efficiency and specificity of CRISPR-associated (Cas) nucleases in plants: An expanded toolkit for precision genome engineering

Raitskin, O.; Schudoma, C.; West, A.; Patron, N. J.

10.1101/422766 — plant biology — Posted on 2018-09-21

836 Anthranilic acid regulates subcellular localization of auxin transporters during root gravitropism

Doyle, S. M.; Rigal, A.; Grones, P.; Karady, M.; Barange, D. K.; Majda, M.; Karampelias, M.; Zwiewka, M.; Pencik, A.; Almqvist, F.; Ljung, K.; Novak, O.; Robert, S.

10.1101/422733 — plant biology — Posted on 2018-09-21

837 Photosynthetic CO2 assimilation: the last gap in the structural proteome is closed

Gurrieri, L.; Del Giudice, A.; Demitri, N.; Falini, G.; Pavel, N. V.; Zaffagnini, M.; Polentarutti, M.; Crozet, P.; Henri, J.; Trost, P.; Lemaire, S.; Sparla, F.; Fermani, S.

10.1101/422709 — plant biology — Posted on 2018-09-21

838 A Multi-Domain Task Battery Reveals Functional Boundaries in the Human Cerebellum

King, M.; Hernandez-Castillo, C. R.; Poldrack, R. R.; Ivry, R.; Diedrichsen, J.

10.1101/423509 — neuroscience — Posted on 2018-09-21

839 Bundle-specific fornix reconstruction for dual-tracer PET-tractometry

Rheault, F.; Roy, M.; Cunnane, S.; Descoteaux, M.

10.1101/423459 — neuroscience — Posted on 2018-09-21

840 Development of a papillation assay using constitutive promoters to find hyperactive transposases

Tellier, M.; Chalmers, R.

10.1101/423012 — molecular biology — Posted on 2018-09-21

841 miRNA analysis with Prost! reveals evolutionary conservation of organ-enriched expression and post-transcriptional modifications in three-spined stickleback and zebrafish

Desvignes, T.; Batzel, P.; Sydes, J.; Eames, B. F.; Postlethwait, J. H.

10.1101/423533 — molecular biology — Posted on 2018-09-21

842 Changes in rearing conditions rapidly modify gut microbiota structure in Tenebrio molitor larvae

Cambon, M.; Ogier, J.-C.; Lanois, A.; Ferdy, J.-B.; Gaudriault, S.

10.1101/423178 — microbiology — Posted on 2018-09-21

843 Evidence that disruption of apicoplast protein import in malaria parasites evades delayed-death growth inhibition

Boucher, M. J.; Yeh, E.

10.1101/422618 — microbiology — Posted on 2018-09-21

844 Photo-inactivation of Neisseria gonorrhoeae: A paradigm changing approach for combating antibiotic-resistant gonococcal infection

Wang, Y.; Baglo, Y.; Ferrer-Espada, R.; Goh, X. S.; Held, K. D.; Grad, Y. H.; Gu, Y.; Gelfand, J. A.; Dai, T.

10.1101/422634 — microbiology — Posted on 2018-09-21

845 Extended hopanoid lipids promote bacterial motility, surface attachment, and root nodule development in the Bradyrhizobium diazoefficiens-Aeschynomene afraspera symbiosis

Belin, B. J.; Tookmanian, E. T.; de Anda, J.; Wong, G.; Newman, D. K.

10.1101/423301 — microbiology — Posted on 2018-09-21

846 Microbial communities across a hillslope-riparian transect shaped by proximity to the stream, groundwater table, and weathered bedrock

Lavy, A.; Geller McGrath, D.; Matheus Carnevali, P. B.; Wan, J.; Dong, W.; Tokunaga, T.; Thomas, B. C.; Williams, K. H.; Hubbard, S.; Banfield, J. F.

10.1101/423368 — microbiology — Posted on 2018-09-21

847 Homologous recombination changes the context of Cytochrome b transcription in the mitochondrial genome of Silene vulgaris KRA

Storchova, H.; Stone, J. D.; Sloan, D. B.; Abeyawardana, O.; Muller, K.; Walterova, J.; Pazoutova, M.

10.1101/422808 — genomics — Posted on 2018-09-21

848 Survival protection mechanisms and genetic variability induction after stress: two sides of the same Hsp70 coin

Cappucci, U.; Noro, F.; Casale, A. M.; Laura, F.; Berloco, M.; Alagia, A. A.; Grassi, L.; Le Pera, L.; Piacentini, L.; Pimpinelli, S.

10.1101/423210 — genetics — Posted on 2018-09-21

849 The genetic legacy of continental scale admixture in Indian Austroasiatic speakers

Tätte, K.; Pagani, L.; Pathak, A. K.; Koks, S.; Ho Duy, B.; Ho, X. D.; Sultana, G. N. N.; Sharif, M. I.; Asaduzzaman, M.; Behar, D. M.; Hadid, Y.; Villems, R.; Chaubey, G.; Kivisild, T.; Metspalu, M.

10.1101/423004 — genetics — Posted on 2018-09-21

850 Paleolithic DNA from the Caucasus reveals core of West Eurasian ancestry

Lazaridis, I.; Belfer-Cohen, A.; Mallick, S.; Patterson, N.; Cheronet, O.; Rohland, N.; Bar-Oz, G.; Bar-Yosef, O.; Jakeli, N.; Kvavadze, E.; Lordkipanidze, D.; Matzkevich, Z.; Meshveliani, T.; Culleton, B. J.; Kennett, D. J.; Pinhasi, R.; Reich, D.

10.1101/423079 — genetics — Posted on 2018-09-21

851 Exons as units of phenotypic impact for truncating mutations in autism

Chiang, A. H.; Chang, J.; Vitkup, D.

10.1101/270850 — genetics — Posted on 2018-09-21

852 The genetics of situs inversus totalis without primary ciliary dyskinesia

Postema, M. C.; Carrion-Castillo, A.; Fisher, S. E.; Vingerhoets, G.; Francks, C.

10.1101/422964 — genetics — Posted on 2018-09-21

853 Transcriptome-wide association supplements genome-wide association in Zea mays

Kremling, K.; Diepenbrock, C.; Gore, M.; Buckler, E.; Bandillo, N.

10.1101/363242 — genetics — Posted on 2018-09-21

854 The evolution of protein domain repertoires: shedding light on the origins of herpesviruses

Brito, A. F.; Pinney, J. W.

10.1101/423525 — evolutionary biology — Posted on 2018-09-21

855 Sexual selection rewires reproductive protein networks

Karr, T.; Southern, H.; Rosenow, M. A.; Gossmann, T. I.; Snook, R. R.

10.1101/422410 — evolutionary biology — Posted on 2018-09-21

856 Detecting mosaic patterns in phenotypic disparity

Parins-Fukuchi, C.

10.1101/423228 — evolutionary biology — Posted on 2018-09-21

857 Defensive symbiosis and the evolution of virulence

Nelson, P. G.; May, G.

10.1101/422436 — evolutionary biology — Posted on 2018-09-21

858 Transgenerational developmental effects of immune priming in the red flour beetle Tribolium castaneum

Schulz, N. K. E.; Sell, M. P.; Ferro, K.; Kleinhölting, N.; Kurtz, J.

10.1101/422741 — evolutionary biology — Posted on 2018-09-21

859 Harnessing natural diversity to identify key residues in Prolidase

Schilbert, H. M.; Pellegrinelli, V.; Rodriguez-Cuenca, S.; Vidal-Puig, A.; Pucker, B.

10.1101/423475 — evolutionary biology — Posted on 2018-09-21

860 Artificial selection of microbial communities can become effective after using evolution-informed strategies

Xie, L.; Yuan, A.; Shou, W.

10.1101/264689 — evolutionary biology — Posted on 2018-09-21

861 RISK FACTORS OF MORTALITY OF HOSPITALISED ADULT BURN PATIENTS A MALAWIAN TERTIARY HOSPITAL BURNS UNIT

Kasenda, S.; Mategula, D.; Manda, G. E.; Chokotho, T. K.

10.1101/421982 — epidemiology — Posted on 2018-09-21

862 Spatio-temporal modelling of Leishmania infantum infection among domestic dogs: a simulation study and sensitivity analysis applied to rural Brazil

Buckingham-Jeffery, E.; Hill, E. M.; Datta, S.; Dilger, E.; Courtenay, O.

10.1101/418558 — epidemiology — Posted on 2018-09-21

863 Urbanization plays a minor role in the flooding and surface water chemistry of Puerto Rico’s mangroves

Branoff, B. L.

10.1101/423434 — ecology — Posted on 2018-09-21

864 Eco-evolutionary processes underlying early warning signals of population declines

Baruah, G.; Clements, C. F.; Ozgul, A.

10.1101/422915 — ecology — Posted on 2018-09-21

865 Nearly unbiased estimator of adult population size based on within-cohort half-sibling pairs incorporating flexible reproductive variation

Akita, T.

10.1101/422659 — ecology — Posted on 2018-09-21

866 Thyroid hormone modulation during zebrafish development recapitulates evolved diversity in danionin jaw protrusion mechanics

Galindo, D.; Sweet, E.; DeLeon, Z.; Wagner, M.; DeLeon, A.; Carter, C.; McMenamin, S.; Cooper, W. J.

10.1101/418483 — developmental biology — Posted on 2018-09-21

867 Formation of the substantia nigra requires Reelin-mediated fast, laterally-directed migration of dopaminergic neurons

Vaswani, A. R.; Weykopf, B.; Hagemann, C.; Fried, H.-U.; Brüstle, O.; Blaess, S.

10.1101/413708 — developmental biology — Posted on 2018-09-21

868 Physicochemical mechanotransduction alters nuclear shape and mechanics via heterochromatin formation

Stephens, A. D.; Liu, P. Z.; Kandula, V.; Chen, H.; Almassalha, L. M.; Backman, V.; O'Halloran, T.; Adam, S. A.; Goldman, R. D.; Banigan, E. J.; Marko, J. F.

10.1101/423442 — cell biology — Posted on 2018-09-21

869 Dissecting heterogeneous cell-populations across signaling and diseaseconditions with PopAlign

Chen, S.; Park, J. H.; Rivaud, P.; Charles, E.; Haliburton, J.; Pichiorri, F.; Thomson, M.

10.1101/421354 — bioinformatics — Posted on 2018-09-21

870 Impact of cancer mutational signatures on transcription factor motifs in the human genome

Chan, C. W.; Gu, Z.; Bieg, M.; Eils, R.; Herrmann, C.

10.1101/422386 — bioinformatics — Posted on 2018-09-21

871 Isolation and Characterization of a Novel Alkaline Lipase/Esterase Lip-1420 from a Metagenomic Library

Hwang, I. T.; Lim, H. K.; Kim, D. R.; Woo, M. W.; Hahm, M.-S.

10.1101/422626 — bioengineering — Posted on 2018-09-21

872 Detection of arterial wall abnormalities via Bayesian model selection

Larson, K.; Bowman, C.; Papadimitriou, C.; Koumoutsakos, P.; Matzavinos, A.

10.1101/422485 — bioengineering — Posted on 2018-09-21

873 System-wide Identification of Enzyme Substrates by Thermal Analysis (SIESTA)

Saei, A. A.; Astorga Wells, J.; Sabatier, P.; Beusch, C.; Chernobrovkin, A.; Rodin, S.; Nareoja, K.; Thorsell, A.-G.; Karlberg, T.; Cheng, Q.; Vegvari, A.; Arner, E. S. J.; Schuler, H.; Zubarev, R.

10.1101/423418 — biochemistry — Posted on 2018-09-21

874 Extrinsic Noise Suppression in Micro RNA Mediated Incoherent Feedforward Loops

Carignano, A.; Mukherjee, S.; Singh, A.; Seelig, G.

10.1101/422394 — systems biology — Posted on 2018-09-21

875 Precision weighting of musical prediction error: converging neurophysiological and behavioral evidence

Quiroga-Martinez, D. R.; Hansen, N. C.; Hoejlund, A.; Pearce, M.; Brattico, E.; Vuust, P.

10.1101/422949 — neuroscience — Posted on 2018-09-21

876 Rapid and highly-specific generation of targeted DNA sequencing libraries enabled by linking capture probes with universal primers

Pel, J.; Leung, A.; Choi, W. W. Y.; Despotovic, M.; Ung, W. L.; Shibahara, G.; Gelinas, L.; Marziali, A.

10.1101/422519 — genomics — Posted on 2018-09-21

877 Organoid culture media containing growth factors of defined cellular activity

Urbischek, M.; Rannickmae, H.; Foets, T.; Ravn, K.; Hyvonen, M.; de la Roche, M. A.

10.1101/422923 — cell biology — Posted on 2018-09-20

878 The dormancy specific regulator, SutA, is an intrinsically-disordered protein that modulates transcription initiation in Pseudomonas aeruginosa

Bergkessel, M.; Babin, B. M.; VanderVelde, D.; Sweredoski, M.; Moradian, A.; Eggleston-Rangel, R.; Hess, S.; Tirrell, D.; Artsimovitch, I.; Newman, D. K.

10.1101/423384 — molecular biology — Posted on 2018-09-20

879 Late Pleistocene human genome suggests a local origin for the first farmers of central Anatolia

Feldman, M.; Fernandez-Dominguez, E.; Reynolds, L.; Baird, D.; Pearson, J.; Hershkovitz, I.; May, H.; Goring-Morris, N.; Benz, M.; Gresky, J.; Bianco, R. A.; Fairbairn, A.; Mustafaoglu, G.; Stockhammer, P. W.; Posth, C.; Haak, W.; Jeong, C.; Krause, J.

10.1101/422295 — genetics — Posted on 2018-09-20

880 Individual selection leads to collective efficiency through coordination

Bernard, A.; Bredeche, N.; Andre, J.-B.

10.1101/422287 — evolutionary biology — Posted on 2018-09-20

881 Non-neutral evolution of H3.3-encoding genes occurs without alterations in protein sequence

Muhire, B. M.; Booker, M. A.; Tolstorukov, M. Y.

10.1101/422311 — evolutionary biology — Posted on 2018-09-20

882 GenEpi: Gene-based Epistasis Discovery Using Machine Learning

Chang, Y.-C.; Wu, J.-T.; Hong, M.-Y.; Tung, Y.-A.; Hsieh, P.-H.; Yee, S. W.; Giacomini, K. M.; Oyang, Y.-J.; Chen, C.-Y.; Alzheimer's Disease Neuroimaging Initiative,

10.1101/421719 — bioinformatics — Posted on 2018-09-20

883 Consensus outlier detection in survival analysis using the rank product test

Carrasquinha, E.; Verissimo, A.; Vinga, S.

10.1101/421917 — bioinformatics — Posted on 2018-09-20

884 Objective versus Self-Reported Energy Intake Changes During Low-Carbohydrate and Low-Fat Diets

Guo, J.; Robinson, J. L.; Gardner, C.; Hall, K. D.

10.1101/421321 — physiology — Posted on 2018-09-20

885 Developmental \"awakening\" of primary motor cortex to the sensory consequences of movement

Dooley, J. C.; Blumberg, M. S.

10.1101/331983 — neuroscience — Posted on 2018-09-20

886 The ATP-dependent chromatin remodelling enzyme Uls1 prevents Topoisomerase II poisoning

Swanston, A.; Zabrady, K.; Ferreira, H. C.

10.1101/412783 — molecular biology — Posted on 2018-09-20

887 Twin Study of Early-Onset Major Depression Finds DNA Methylation Enrichment for Neurodevelopmental Genes

Roberson-Nay, R.; Wolen, A. R.; Lapato, D. M.; Lancaster, E. E.; Webb, B. T.; Verhulst, B.; Hettema, J. M.; York, T. P.

10.1101/422345 — genetics — Posted on 2018-09-20

888 Policy lessons from spatiotemporal enrollment patterns of Payment for Ecosystem Service Programs in Argentina

Nunez-Regueiro, M.; Branch, L.; Hiller, J.; Nunez Godoy, C.; Siddiqui, S.; Volante, J.; Soto, J. R.

10.1101/421933 — ecology — Posted on 2018-09-20

889 Actomyosin controls planarity and folding of epithelia in response to compression

Wyatt, T. P. J.; Fouchard, J.; Lisica, A.; Khalilgharibi, N.; Baum, B.; Recho, P.; Kabla, A. J.; Charras, G. T.

10.1101/422196 — biophysics — Posted on 2018-09-20

890 MOSim: Multi-Omics Simulation in R

Martinez-Mira, C.; Conesa, A.; Tarazona, S.

10.1101/421834 — bioinformatics — Posted on 2018-09-20

891 Thalamocortical dynamics underlying spontaneous transitions in beta power in Parkinsonism

Reis, C.; Sharott, A.; Magill, P. J.; van Wijk, B.; Parr, T.; Zeidman, P.; Friston, K.; Cagnan, H.

10.1101/422238 — neuroscience — Posted on 2018-09-20

892 FORGe: prioritizing variants for graph genomes

Pritt, J.; Chen, N.-C.; Langmead, B.

10.1101/311720 — bioinformatics — Posted on 2018-09-20

893 The wildlife-livestock interface modulates anthrax suitability in India

Walsh, M.; Mor, S.; Hossain, S.

10.1101/419465 — epidemiology — Posted on 2018-09-20

894 Principal Component Analysis Applied to Alzheimers Disease: USA by State

Parady, B.

10.1101/420539 — epidemiology — Posted on 2018-09-20

895 Predictive model in the presence of missing data: the centroid criterion for variable selection

gaudart, j.; ADALIAN, P.; leonetti, g.

10.1101/420943 — epidemiology — Posted on 2018-09-20

896 Does the interaction between partnership status and average progesterone level predict women’s preferences for facial masculinity?

DeBruine, L. M.; Hahn, A.; Jones, B.

10.1101/376350 — animal behavior and cognition — Posted on 2018-09-20

897 Receptor-Based Mechanism of Cell Memory and Relative Sensing in Mammalian Signaling Networks

Lyashenko, E.; Niepel, M.; Dixit, P.; Lim, S. K.; Sorger, P.; Vitkup, D.

10.1101/158774 — systems biology — Posted on 2018-09-20

898 The Clinical and Molecular Epidemiology of CTX-M-9 Group Producing Enterobacteriaceae infections in children

Logan, L. K.; Medernach, R. L.; Domitrovic, T. N.; Rispens, J. R.; Hujer, A. M.; Qureshi, N. K.; Marshall, S. H.; Nguyen, D. C.; Rudin, S. D.; Zheng, X.; Weinstein, R. A.; Bonomo, R. A.

10.1101/416016 — epidemiology — Posted on 2018-09-20

899 Spatio-temporal modelling of Leishmania infantum infection among domestic dogs: a simulation study and sensitivity analysis applied to rural Brazil

Buckingham-Jeffery, E.; Hill, E. M.; Datta, S.; Dilger, E.; Courtenay, O.

10.1101/418558 — epidemiology — Posted on 2018-09-20

900 Serotype association with neonatal invasive potential, disease manifestation, and clinical outcome in group B Streptococcus: A Bayesian analysis

Lewnard, J. A.; Cowley, L. A.

10.1101/421412 — epidemiology — Posted on 2018-09-20

901 Evaluation of correlates of protection against influenza A(H3N2) and A(H1N1)pdm09 infection: Applications to the hospitalized patient population.

Petrie, J. G.; Martin, E. T.; Truscon, R.; Johnson, E.; Cheng, C. K.; McSpadden, E.; Malosh, R. E.; Lauring, A. S.; Lamerato, L. E.; Eichelberger, M. C.; Ferdinands, J. M.; Monto, A. S.

10.1101/416628 — epidemiology — Posted on 2018-09-20

902 Determinants of accelerated metabolomic and epigenetic ageing in a UK cohort

Robinson, O. J.; Chadeau Hyam, M.; Karaman, I.; Climaco Pinto, R.; Fiorito, G.; Gao, H.; Heard, A.; Jarvelin, M.-R.; Lewis, M.; Pazoki, R.; Polidoro, S.; Tzoulaki, I.; Wielscher, M.; Elliott, P.; Vineis, P.

10.1101/411603 — epidemiology — Posted on 2018-09-20

903 Predictive Modelling of The Dynamic Patterns of Thinkingin Attention-Deficit/Hyperactivity Disorder: DiagnosticAccuracy of Spatiotemporal Fractal Measures

Labra-Sprohnle, F.; Smith, G.; Ahammer, H.; Postlethwaite, C.; Liu, I.; Teesdale-Spittle, P.; Frean, M.

10.1101/420513 — clinical trials — Posted on 2018-09-20

904 Cohort Profile: Extended Cohort for E-health, Environment and DNA (EXCEED)

John, C.; Reeve, N. F.; Free, R. C.; Williams, A. T.; Farmaki, A.-E.; Bethea, J.; Shrine, N.; Batini, C.; Packer, R.; Terry, S.; Hargadon, B.; Wang, Q.; Melbourne, C.; Harrington, K.; Brunskill, N. J.; Brightling, C. E.; Barwell, J.; Wallace, S. E.; Hsu, R.; Shepherd, D. J.; Hollox, E. J.; Wain, L. V.; Tobin, M. D.

10.1101/422782 — epidemiology — Posted on 2018-09-20

905 The geography of malaria elimination in Bangladesh: combining data layers to estimate the spatial spread of parasites

Chang, H.-H.; Wesolowski, A.; Sinha, I.; Jacob, C. G.; Mahmud, A.; Uddin, D.; Zaman, S. I.; Hossain, M. A.; Faiz, M. A.; Ghose, A.; Sayeed, A. A.; Rahman, M. R.; Islam, A.; Karim, M. J.; Rezwan, M. K.; Shamsuzzaman, A. K. M.; Jhora, S. T.; Aktaruzzaman, M. M.; Miotto, O.; Engo-Monsen, K.; Kwiatkowski, D.; Maude, R. J.; Buckee, C. O.

10.1101/421578 — epidemiology — Posted on 2018-09-20

906 RUNX proteins desensitize multiple myeloma to lenalidomide via protecting IKZFs from degradation

Zhou, N.; Gutierrez Uzquiza, A.; Zheng, X. Y.; Vogl, D.; Garfall, A. L.; Bernabei, L.; Saraf, A.; Florens, L.; Washburn, M. P.; Illendula, A.; Bushweller, J. H.; Busino, L.

10.1101/423350 — cancer biology — Posted on 2018-09-20

907 Spatio-temporal structure and reproductive success in a rook (Corvus frugilegus) colony

Fero, O.; Ban, M.; Barta, Z.

10.1101/409664 — animal behavior and cognition — Posted on 2018-09-20

908 An Extreme Value Theory Model of Cross-Modal Sensory Information Integration in Modulation of Vertebrate Visual System Functions

Banerjee, S.; Scheirer, W. J.; Li, L.

10.1101/423038 — neuroscience — Posted on 2018-09-20

909 The effects of age at menarche and first sexual intercourse on reproductive and behavioural outcomes: a Mendelian randomization study

Lawn, R. B.; Sallis, H. M.; Wootton, R. E.; Taylor, A. E.; Demange, P.; Fraser, A.; Penton-Voak, I. S.; Munafo, M. R.

10.1101/423251 — evolutionary biology — Posted on 2018-09-20

910 Red and black: A β-carotene-binding protein carrying a red pigment regulates body-color transition in locusts

Kang, L.; Yang, M.; Wang, Y.; Liu, Q.; Liu, Z.; Jiang, F.; Wang, H.; Guo, X.; Zhang, J.

10.1101/422212 — evolutionary biology — Posted on 2018-09-20

911 Keratinocyte desmoglein 1 regulates the epidermal microenvironment and tanning response

Arnette, C. R.; Koetsier, J. L.; Broussard, J. A.; Gerami, P.; Johnson, J. L.; Green, K. J.

10.1101/423269 — cell biology — Posted on 2018-09-20

912 Molecular basis for activation of lecithin:cholesterol acyltransferase by a compound that increases HDL cholesterol

Manthei, K. A.; Yang, S.-M.; Baljinnyam, B.; Chang, L.; Glukhova, A.; Yuan, W.; Freeman, L. A.; Maloney, D. J.; Schwendeman, A.; Remaley, A. T.; Jadhav, A.; Tesmer, J. J. G.

10.1101/422725 — biochemistry — Posted on 2018-09-20

913 The molecular mechanisms underlying hidden phenotypic variation among metallo-β-lactamases

Tokuriki, N.; Socha, R. D.

10.1101/422303 — biochemistry — Posted on 2018-09-20

914 Quantitative variations of ADF/cofilin’s multiple actions on actin filaments with pH

Wioland, H.; Jegou, A.; Romet-Lemonne, G.

10.1101/422824 — biochemistry — Posted on 2018-09-20

915 Proximity sensors reveal social information transfer in maternity colonies of Greater noctule bats

Ripperger, S.; Guenther, L.; Wieser, H.; Duda, N.; Hierold, M.; Cassens, B.; Kapitza, R.; Koelpin, A.; Mayer, F.

10.1101/421974 — animal behavior and cognition — Posted on 2018-09-20

916 Unbiased screen of RNA tailing enzymes at single-nucleotide resolution reveals a poly(UG) polymerase required for genome integrity and RNA silencing

Preston, M. A.; Porter, D. F.; Chen, F.; Buter, N.; Lapointe, C. P.; Keles, S.; Kimble, J.; Wickens, M.

10.1101/422972 — molecular biology — Posted on 2018-09-20

917 Genome wide association study of body weight, body mass index, adiposity, and fasting glucose in 3,173 outbred rats

Chitre, A. S.; Polesskaya, O.; Holl, K.; Gao, J.; Cheng, R.; Martinez, A.; George, T.; Gileta, A. F.; Han, W.; Horvath, A.; Hughson, A.; Ishiwari, K.; King, C. P.; Lamparelli, A.; Versaggi, C. L.; Martin, C.; St. Pierre, C. L.; Tripi, J. A.; Wang, T.; Wladecki, H.; Chen, H.; Flagel, S. B.; Meyer, P.; Richards, J.; Robinson, T. E.; Palmer, A. A.; Solberg Woods, L. C.

10.1101/422428 — genetics — Posted on 2018-09-20

918 De novo assembly, delivery and expression of a 101 kb human gene in mouse cells

Mitchell, L. A.; McCulloch, L. H.; Pinglay, S.; Berger, H.; Bulajic, M.; Martin, J. A.; Hogan, M. S.; Mazzoni, E.; Maurano, M. T.; Boeke, J. D.

10.1101/423426 — genetics — Posted on 2018-09-20

919 STAT3 promotes melanoma metastasis by CEBP-induced repression of the MITF pigmentation pathway

Swoboda, A.; Soukup, R.; Kinslechner, K.; Wingelhofer, B.; Schoerghofer, D.; Sternberg, C.; Pham, H.; Vallianou, M.; Horvath, J.; Stoiber, D.; Kenner, L.; Larue, L.; Poli, V.; Beermann, F.; Yokota, T.; Kubicek, S.; Krausgruber, T.; Rendeiro, A.; Bock, C.; Zenz, R.; Kovacic, B.; Aberger, F.; Hengstschlaeger, M.; Petzelbauer, P.; Mikula, M.; Moriggl, R.

10.1101/422832 — cancer biology — Posted on 2018-09-20

920 One drug multiple targets: An approach to predict drug efficacies on bacterial strains differing in membrane composition

MAJUMDER, A.; Biswal, M. R.; Prakash, M. K.

10.1101/423319 — biochemistry — Posted on 2018-09-20

921 Male Anolis lizards prefer virgin females

Stapley, J.

10.1101/421925 — animal behavior and cognition — Posted on 2018-09-20

922 The essential role of hypermutation in rapid adaptation to antibiotic stress

Mehta, H. H.; Prater, A. G.; Beabout, K.; Elworth, R.; Karavis, M.; Gibbons, H. S.; Shamoo, Y.

10.1101/422642 — evolutionary biology — Posted on 2018-09-20

923 Pan-cancer whole genome analyses of metastatic solid tumors

Priestley, P.; Baber, J.; Lolkema, M.; Steeghs, N.; de Bruijn, E.; Duyvesteyn, K.; Haidari, S.; van Hoeck, A.; Onstenk, W.; Roepman, P.; Shale, C.; Voda, M.; Bloemendal, H.; Tjan-Heijnen, V.; van Herpen, C.; Labots, M.; Witteveen, P.; Smit, E.; Sleijfer, S.; Voest, E.; Cuppen, E.

10.1101/415133 — cancer biology — Posted on 2018-09-20

924 Comprehensive transcriptomic analysis of cell lines as models of primary tumor samples across 22 tumor types

Yu, K.; Chen, B.; Aran, D.; Goldstein, T.; Sirota, M.

10.1101/422592 — bioinformatics — Posted on 2018-09-20

925 Range size dynamics can explain why evolutionarily age and diversification rate correlate with contemporary extinction risk in plants

Tanentzap, A. J.; Igea, J.; Johnston, M. G.; Larcombe, M. J.

10.1101/152215 — evolutionary biology — Posted on 2018-09-20

926 Associations between Afrotropical bats, parasites, and microbial symbionts

Lutz, H. L.; Jackson, E. W.; Dick, C.; Webala, P. W.; Babyesiza, W. S.; Kerbis Peterhans, J. C.; Demos, T. C.; Patterson, B. D.; Gilbert, J. A.

10.1101/340109 — ecology — Posted on 2018-09-20

927 High-density multi-fiber photometry for studying large-scale brain circuit dynamics

Sych, Y.; Chernysheva, M.; Sumanovski, L.; Helmchen, F.

10.1101/422857 — neuroscience — Posted on 2018-09-20

928 Collateral sensitivity is contingent on the repeatability of evolution

Nichol, D.; Rutter, J.; Bryant, C.; Hujer, A. M.; Lek, S.; Adams, M. D.; Jeavons, P.; Anderson, A.; Bonomo, R.; Scott, J.

10.1101/185892 — evolutionary biology — Posted on 2018-09-20

929 The Emergent Connectome in Caenorhabditis elegans Embryogenesis

DevoWorm Group, ; Alicea, B. J.

10.1101/146035 — bioinformatics — Posted on 2018-09-20

930 An Extreme Value Theory Model of Cross-Modal Sensory Information Integration in Modulation of Vertebrate Visual System Functions

Banerjee, S.; Scheirer, W. J.; Li, L.

10.1101/423038 — neuroscience — Posted on 2018-09-20

931 Giant flagellins form thick flagellar filaments in two species of marine γ-proteobacteria

Thomson, N. M.; Ferreira, J. L.; Matthews-Palmer, T. R.; Beeby, M.; Pallen, M. J.

10.1101/221366 — microbiology — Posted on 2018-09-20

932 Modelling microbiome recovery after antibiotics using a stability landscape framework

Shaw, L. P.; Bassam, H.; Barnes, C. P.; Walker, A. S.; Klein, N.; Balloux, F.

10.1101/222398 — microbiology — Posted on 2018-09-20

933 Neuronal population correlates of target selection and distractor filtering

Astrand, E.; Wardak, C.; Ben Hamed, S.

10.1101/422873 — neuroscience — Posted on 2018-09-20

934 Parameter tuning is a key part of dimensionality reduction via deep variational autoencoders for single cell RNA transcriptomics

Hu, Q.; Greene, C. S.

10.1101/385534 — bioinformatics — Posted on 2018-09-20

935 Adaptive and Wireless Recordings of Electrophysiological Signals during Concurrent Magnetic Resonance Imaging

Mandal, R.; Babaria, N.; Cao, J.; Liu, Z.

10.1101/259762 — bioengineering — Posted on 2018-09-20

936 Probing variability in a cognitive map using manifold inference from neural dynamics

Low, R. J.; Lewallen, S.; Aronov, D.; Nevers, R.; Tank, D. W.

10.1101/418939 — neuroscience — Posted on 2018-09-20

937 Inpatient mobility to predict hospital-onset Clostridium difficile: a network approach

Bush, K.; Barbosa, H.; Farooq, S.; Weisenthal, S. J.; Trayhan, M.; White, R. J.; Ghoshal, G.; Zand, M. S.

10.1101/404160 — epidemiology — Posted on 2018-09-20

938 Recruit symbiosis establishment and Symbiodiniceae composition influenced by adult corals and reef sediment

Ali, A.; Kriefall, N. G.; Emery, L. E.; Kenkel, C. D.; Matz, M. V.; Davies, S. W.

10.1101/421339 — zoology — Posted on 2018-09-20

939 Genome-scale fitness profile of Caulobacter crescentus grown in natural freshwater

Hentchel, K. L.; Reyes Ruiz, L. M.; Fiebig, A.; Curtis, P. D.; Coleman, M. L.; Crosson, S.

10.1101/279711 — microbiology — Posted on 2018-09-20

940 Hippocampal Pattern Separation Supports Reinforcement Learning

Ballard, I. C.; Wagner, A. D.; McClure, S. M.

10.1101/293332 — neuroscience — Posted on 2018-09-20

941 Lymphocyte activation gene 3 (Lag3) expression is increased in prion infections but does not modify disease progression

Liu, Y.; Sorce, S.; Nuvolone, M.; Domange, J.; Aguzzi, A.

10.1101/291401 — neuroscience — Posted on 2018-09-20

942 Automated High-Throughput Light-Sheet Fluorescence Microscopy of Larval Zebrafish

Logan, S. L.; Dudley, C.; Baker, R. P.; Taormina, M. J.; Hay, E. A.; Parthasarathy, R.

10.1101/330639 — bioengineering — Posted on 2018-09-20

943 Reconstruction of post-synaptic potentials by reverse modeling of local field potentials

Yochum, M.; Modolo, J.; Benquet, P.; Wendling, F.

10.1101/346148 — neuroscience — Posted on 2018-09-20

944 Cationic charge and polyspecificity of an integrin domain regulates infectivity of malaria parasites

Klug, D.; Goellner, S.; Sattler, J.; Strauss, L.; Kehrer, J.; Beyer, K.; Reinig, M.; Singer, M.; Lu, C.; Springer, T. A.; Frischknecht, F.

10.1101/421800 — microbiology — Posted on 2018-09-20

945 Quantifying Heterogeneity in the Genetic Architecture of Complex Traits Between Ethnically Diverse Groups using Random Effect Interaction Models

Veturi, Y.; de los Campos, G.; Yi, N.; Huang, W.; Vazquez, A. I.; Kuhnel, B.

10.1101/421149 — genetics — Posted on 2018-09-20

946 Customizing material into embodied cap by sponge crab

Harada, K.; Kagaya, K.

10.1101/330787 — animal behavior and cognition — Posted on 2018-09-20

947 Speciation in a biodiversity hotspot: phylogenetic relationships, species delimitation, and divergence times of the Patagonian ground frogs of Eupsophus roseus group (Alsodidae)

Suarez, E. Y.; Quercia, C. A.; Diaz, L.; Vera-Sovier, V. A.; Nunez, J.

10.1101/423202 — zoology — Posted on 2018-09-20

948 PLOS ONETitle - Optimization of the flash extraction of flavonoids from the leaves of Salix babylonica using the response surface method and an evaluation of the leaves high antioxidant activity

chen, h.; Diao, L.; Zhang, Y.; Liu, H.; Zhong, M.; Li, G.

10.1101/423095 — pharmacology and toxicology — Posted on 2018-09-20

949 Characteristics of a SAR11 strain grown in batch and continuous culture

Grant, S. R.; Church, M. J.; Ferron, S.; Laws, E.; Rappe, M.

10.1101/421644 — microbiology — Posted on 2018-09-20

950 PIRD: Pan immune repertoire database

Zhang, W.; Wang, L.; Liu, K.; Wei, X.; Yang, K.; Du, W.; Wang, S.; Guo, N.; Ma, C.; Luo, L.; Wu, J.; Lin, L.; Yang, F.; Gao, F.; Wang, X.; Li, T.; Zhang, R.; Saksena, N. K.; Yang, H.; Wang, J.; Fang, L.; Hou, Y.; Xu, X.; Liu, X.

10.1101/399493 — immunology — Posted on 2018-09-20

951 Abundance of whales in West and East Greenland in summer 2015

Hansen, R. G.; Boye, T. H.; Larsen, R. S.; Nielsen, N. H.; Tervo, O.; Nielsen, R. D.; Rasmussen, M. H.; Sinding, M.-H. S.; Heide-Jorgensen, M. P.

10.1101/391680 — ecology — Posted on 2018-09-20

952 Single fiber proteomics of respiratory chain defects in mitochondrial disorders

Murgia, M.; Tan, J.; Geyer, P.; Doll, S.; Mann, M.; Klopstock, T.

10.1101/421750 — pathology — Posted on 2018-09-20

953 Tissue-expression profiles unveils the gene interaction of hepatopancreas, eyestalk, and ovary in precocious female Chinese mitten crab, Eriocheir sinensis

Chen, X.; Wang, J.; Hou, X.; Yue, W.; Huang, S.; Wang, C.

10.1101/420182 — developmental biology — Posted on 2018-09-20

954 An in-depth look at DNA crystals through the prism of molecular dynamics simulations

Kuzmanic, A.; Dans, P. D.; Orozco, M.

10.1101/413336 — biophysics — Posted on 2018-09-20

955 Complex human gut microbiome cultured in anaerobic human intestine chips

Jalili-Firoozinezhad, S.; Gazzaniga, F. S.; Calamari, E. L.; Camacho, D. M.; Fadel, C. W.; Nestor, B.; Cronce, M. J.; Tovaglieri, A.; Levy, O.; Gregory, K. E.; Breault, D. T.; Cabral, J. M. S.; Kasper, D. L.; Novak, R.; Ingber, D. E.

10.1101/421404 — bioengineering — Posted on 2018-09-20

956 Candida albicans biofilms are generally devoid of persister cells

Denega, I.; D'Enfert, C.; Bachellier-Bassi, S.

10.1101/420596 — microbiology — Posted on 2018-09-20

957 Chemerin Induced by Treponema pallidum Predicted Membrane Protein Tp0965 Mediates Endothelial Dysfunction via Activating MAPK Signaling Pathway

Zhang, R.-L.; Yang, L.-J.; Wang, Q.-Q.

10.1101/423160 — microbiology — Posted on 2018-09-20

958 Epigenetic signatures associated with imprinted paternally-expressed genes in the Arabidopsis endosperm

Köhler, C.; Moreno-Romero, J.; De Leon, G. D. T.; Yadav, V. K.; Santos-Gonzalez, J.

10.1101/423137 — genetics — Posted on 2018-09-20

959 Paternal knockdown of Dnmt2 increases offspring susceptibility to bacterial infection

Schulz, N. K. E.; Diddens-de Buhr, M. F.; Kurtz, J.

10.1101/422063 — evolutionary biology — Posted on 2018-09-20

960 Estimating the current burden of Chagas disease in Mexico: a systematic review of epidemiological surveys from 2006 to 2017

Arnal, A.; Waleckx, E.; Herrera, C.; Dumonteil, E.

10.1101/423145 — epidemiology — Posted on 2018-09-20

961 Proteus: an R package for downstream analysis of MaxQuant output

Gierlinski, M.; Gastaldello, F.; Cole, C.; Barton, G. J.

10.1101/416511 — bioinformatics — Posted on 2018-09-20

962 Characteristics of Interactions at Protein Segments External to Globular Domains in the Protein Data Bank

Kasahara, K.; Minami, S.; Aizawa, Y.

10.1101/423087 — bioinformatics — Posted on 2018-09-20

963 A novel innate lymphoid cell delineates childhood autoimmune arthritis

Velasco-Herrera, M. D. C.; Young, M. D.; Braga, F. A. V.; Rosser, E. C.; Miranda, E.; Marshall, L.; Wilkinson, M. G. L.; Mamanova, L.; Efremova, M.; Vento-Tormo, R.; Cagan, A.; Al-Mossawi, H.; Teichmann, S.; Flanagan, A. M.; Wedderburn, L.; Behjati, S.; Brown, C. C.

10.1101/416784 — immunology — Posted on 2018-09-20

964 Short exon prediction based on multiscale products of a genomic-inspired multiscale bilateral filtering

Zhang, X.; Pan, W.

10.1101/423053 — genomics — Posted on 2018-09-20

965 Assessing Disease Experience across the Life Span for Individuals with Osteogenesis Imperfecta: Challenges and Opportunities for Patient-Reported Outcomes (PROs) Measurement

Tosi, L. L.; Floor, M. K.; Dollar, C. M.; Gillies, A. P.; Members of the Brittle Bone Disease Consortium, ; Hart, T. S.; Cuthbertson, D.; Sutton, V. R.; Krischer, J. P.

10.1101/418251 — genetics — Posted on 2018-09-20

966 Molecular characterization of the viral structural gene of the first dengue virus type 1 outbreak in Xishuangbanna, a border area of China, Burma and Laos

Lin, Y.; Ma, D.; Wen, S.; Zeng, F.; Hong, S.; Li, L.; Li, X.; Wang, X.; Ma, Z.; Pan, Y.; Chen, J.; Xi, J.; Qiu, L.; Shan, X.; Sun, Q.

10.1101/423152 — epidemiology — Posted on 2018-09-20

967 HBx enhances CPAP expression via interacting with CREB to promote hepatocarcinogenesis in HBV-associated HCC

Yen, C.-J.; Yang, S.-T.; Chen, R.-Y.; Huang, W.; Chayama, K.; Lee, M.-H.; Yang, S.-J.; Hsiao, Y.-W.; Wang, J.-M.; Lin, Y.-J.; Hung, L.-Y.

10.1101/423194 — cancer biology — Posted on 2018-09-20

968 Desikan-Killiany-Tourville Atlas Compatible Version of M-CRIB Neonatal Parcellated Whole Brain Atlas: The M-CRIB 2.0

Alexander, B.; Loh, W. Y.; Matthews, L. G.; Murray, A. L.; Adamson, C.; Beare, R.; Chen, J.; Kelly, C. E.; Anderson, P. J.; Doyle, L. W.; Spittle, A. J.; Cheong, J. L. Y.; Seal, M. L.; Thompson, D. K.

10.1101/409045 — neuroscience — Posted on 2018-09-20

969 Mis-expression of the Alzheimers disease associated gene Ankyrin causes memory loss and shortened lifespan in Drosophila

Higham, J. P.; Malik, B. R.; Buhl, E.; Dawson, J.; Ogier, A. S.; Lunnon, K.; Hodge, J. J.

10.1101/423129 — neuroscience — Posted on 2018-09-20

970 Whole transcriptome sequencing and biomineralization gene architecture associated with cultured pearl quality traits in the pearl oyster, Pinctada margaritifera

Le Luyer, J.; Auffret, P.; Quillien, V.; Leclerc, N.; Reisser, C.; Vidal-Dupiol, J.; Ky, C.-L.

10.1101/421545 — molecular biology — Posted on 2018-09-20

971 Comparative analysis of PknB inhibitors for reactivity and toxicity

Wlodarchak, N.; Beczkiewicz, J.; Seitz, S.; Ye, Z.; Feltenberger, J.; Davis, J. M.; Striker, R. T.

10.1101/423061 — microbiology — Posted on 2018-09-20

972 Comprehensive evaluation of differential serodiagnosis between Zika and dengue viral infection

Chao, D.-Y.; Whitney, M. T.; Davis, B. S.; Medina, F. A.; Munoz, J. L.; Chang, G.-J. J.

10.1101/421628 — microbiology — Posted on 2018-09-20

973 Boundaries support specific long-distance interactions between enhancers and promoters in Drosophila Bithorax complex

Georgiev, P.; Postika, N.; Metzler, M.; Affolter, M.; Müller, M.; Schedl, P.; Kyrchanova, O.

10.1101/423103 — genetics — Posted on 2018-09-20

974 Transition bias influences the evolution of antibiotic resistance in Mycobacterium tuberculosis

Payne, J. L.; Menardo, F.; Trauner, A.; Borrell, S.; Gygli, S.; Loiseau, C.; Gagneux, S.; Hall, A.

10.1101/421651 — evolutionary biology — Posted on 2018-09-20

975 Repeated phenotypic evolution by different genetic routes: the evolution of colony switching in Pseudomonas fluorescens SBW25

Gallie, J.; Bertels, F.; Remigi, P.; Ferguson, G. C.; Nestmann, S.; Rainey, P. B.

10.1101/414219 — evolutionary biology — Posted on 2018-09-20

976 Perspectives from animal demography on incorporating evolutionary mechanism into plant population dynamics

Paniw, M.

10.1101/420869 — ecology — Posted on 2018-09-20

977 Dynamic Processing of Displacement Loops During Recombinational DNA Repair

Piazza, A.; Shah, S. S.; Wright, W. D.; Gore, S. K.; Koszul, R.; Heyer, W.-D.

10.1101/421990 — molecular biology — Posted on 2018-09-20

978 DksA controls the response of the Lyme disease spirochete Borrelia burgdorferi to starvation

Boyle, W. K.; Groshong, A.; Drecktrah, D.; Boylan, J. A.; Blevins, J. S.; Samuels, S.; Gherardini, F. C.; Bourret, T.

10.1101/421636 — microbiology — Posted on 2018-09-20

979 Genotyping by low-coverage whole-genome sequencing in intercross pedigrees from outbred founders: a cost efficient approach

Zan, Y.; Payen, T.; Lillie, M.; Honaker, C.; Siegel, P. B.; Carlborg, O.

10.1101/421768 — genetics — Posted on 2018-09-20

980 Rare genetic variation is important for survival in extreme low pH conditions

Brennan, R. S.; Garrett, A. D.; Huber, K. E.; Hargarten, H.; Pespeni, M. H.

10.1101/422261 — evolutionary biology — Posted on 2018-09-20

981 The essential role of hypermutation in rapid adaptation to antibiotic stress

Mehta, H. H.; Prater, A. G.; Beabout, K.; Elworth, R.; Karavis, M.; Gibbons, H. S.; Shamoo, Y.

10.1101/422642 — evolutionary biology — Posted on 2018-09-20

982 Genome-wide active enhancer identification using cell type-specific signatures of epigenomic activity

Jhanwar, S.; Ossowski, S.; Davila-Velderrain, J.

10.1101/421230 — bioinformatics — Posted on 2018-09-20

983 The Evolutionary Landscape of Pan-Cancer Drives Clinical Aggression

Pang, S.; Wu, L.; Shen, X.; Sun, Y.; Wang, J.; Zhao, Y.-L.; Wang, Z.; Li, Y.

10.1101/422667 — cancer biology — Posted on 2018-09-20

984 Identification of differentially methylated cell-types in Epigenome-Wide Association Studies

Zheng, S. C.; Breeze, C. E.; Beck, S.; Teschendorff, A.

10.1101/421966 — bioinformatics — Posted on 2018-09-20

985 eQTL network analysis reveals that regulatory genes are evolutionarily older and bearing more types of PTM sites in Coprinopsis cinerea

Chang, J.; Au, C. H.; Cheng, C.; Kwan, H. S.

10.1101/413062 — bioinformatics — Posted on 2018-09-20

986 Pharmacokinetics, Side Effects, and Anti-Hyperalgesic Efficacy of The Mglu5 Antagonist Fenobam.

Cavallone, L. F.; Montana, M. C.; Frey, K.; Kallogjeri, D.; Wages, J. M.; Rodebaugh, T. L.; Doshi, T.; Gereau, R. W.

10.1101/391383 — neuroscience — Posted on 2018-09-20

987 Molecular measurable residual disease testing of blood during AML cytotoxic therapy for early prediction of clinical response

Wong, H. Y.; Sung, A. D.; Lindblad, K. E.; Sheela, S.; Roloff, G. W.; Rizzieri, D.; Goswami, M.; Mule, M. P.; Ramos, N. R.; Tang, J.; Thompson, J.; DeStefano, C. B.; Romero, K.; Dillon, L. W.; Kim, D.-Y.; Lai, C.; Hourigan, C. S.

10.1101/422352 — cancer biology — Posted on 2018-09-20

988 Cex1 is a new component of the COPI Golgi-to-vacuole intracellular trafficking machinery

Enkler, L.; de Craene, J. O.; Rinaldi, B.; Hammann, P.; Nureki, O.; Senger, B.; Friant, S.; Becker, H. D.

10.1101/414367 — cell biology — Posted on 2018-09-20

989 How yeast cells find their mates

Lew, D. J.; Henderson, N. T.; Clark-Cotton, M. R.; Zyla, T. R.

10.1101/422790 — cell biology — Posted on 2018-09-20

990 Detection of early stage pancreatic cancer using 5-hydroxymethylcytosine signatures in circulating cell free DNA

Collin, F.; Ning, Y.; Phillips, T.; McCarthy, E.; Scott, A.; Ellison, C.; Ku, C.-J.; Guler, G. D.; Chau, K.; Ashworth, A.; Quake, S. R.; Levy, S.

10.1101/422675 — cancer biology — Posted on 2018-09-20

991 The Oligomerization Landscape of Histones

Zhao, H.; Winogradoff, D.; Dalal, Y.; Papoian, G.

10.1101/422360 — biophysics — Posted on 2018-09-20

992 Twist-bend coupling and the statistical mechanics of DNA: perturbation theory and beyond

Nomidis, S. K.; Skoruppa, E.; Carlon, E.; Marko, J. F.

10.1101/422683 — biophysics — Posted on 2018-09-20

993 Beta and theta oscillations differentially support free versus forced control over target selection in visual search

van Driel, J.; Ort, E.; Fahrenfort, J. J.; Olivers, C. N. L.

10.1101/422691 — neuroscience — Posted on 2018-09-20

994 Agent-Based Modeling Demonstrates How Local Chemotactic Behavior Can Shape Biofilm Architecture

Sweeney, E. G.; Nishida, A.; Weston, A. W.; Banuelos, M. S.; Potter, K.; Conery, J. S.; Guillemin, K.

10.1101/421610 — microbiology — Posted on 2018-09-20

995 Towards identifying subnetworks from FBF binding landscapes in Caenorhabditis spermatogenic or oogenic germlines

Porter, D. F.; Prasad, A.; Carrick, B. H.; Kroll-Connor, P.; Wickens, M.; Kimble, J.

10.1101/422584 — developmental biology — Posted on 2018-09-20

996 Electroporation of short hairpin RNAs for rapid and efficient gene knockdown in the starlet sea anemone, Nematostella vectensis

Karabulut, A. C.; He, S.; Chen, C.-Y.; McKinney, S. A.; Gibson, M. C.

10.1101/422113 — developmental biology — Posted on 2018-09-20

997 Twist-bend coupling and the statistical mechanics of DNA: perturbation theory and beyond

Nomidis, S. K.; Skoruppa, E.; Carlon, E.; Marko, J. F.

10.1101/422683 — biophysics — Posted on 2018-09-20

998 Distinct nanoscale calcium channel and synaptic vesicle topographies contribute to the diversity of synaptic function

Rebola, N.; Reva, M.; Kirizs, T.; Szoboszlay, M.; Moneron, G.; Nusser, Z.; DiGregorio, D.

10.1101/421370 — neuroscience — Posted on 2018-09-20

999 Glial immune-related pathways as mediators of closed head TBI effects on behavior in Drosophila

van Alphen, B.; Stewart, S.; Iwanaszko, M.; Xu, F.; Bang, E.; Rozenfeld, S.; Ramakrishnan, A.; Itoh, T. Q.; Braun, R. I.; Allada, R.

10.1101/422535 — neuroscience — Posted on 2018-09-20

1000 High-throughput mapping of mesoscale connectomes in individual mice

Huang, L.; Kebschull, J.; Furth, D.; Musall, S.; Kaufman, M. T.; Churchland, A. K.; Zador, A.

10.1101/422477 — neuroscience — Posted on 2018-09-20

1001 Exploring spatio-temporal neural dynamics of the human visual cortex

Yang, Y.; Tarr, M. J.; Kass, R. E.; Aminoff, E. M.

10.1101/422576 — neuroscience — Posted on 2018-09-20

1002 Gene expression profiling of The Cancer Genome Atlas supports an inverse association between body mass index (BMI) and major oesophageal tumour subtypes

Seim, I.; Jeffery, P. L.; Chopin, L. K.

10.1101/378778 — genetics — Posted on 2018-09-20

1003 Deacetylation of catalytic lysine in CDK1 is essential for Cyclin-B binding and cell cycle

Deota, S.; Rathnachalam, S.; Namrata, K.; Boob, M.; Fulzele, A.; S, R.; Ganguli, S.; Balaji, C.; Kaypee, S.; Vishwakarma, K. K.; Kundu, T. K.; Bhandari, R.; Gozalez de Peredo, A.; Mishra, M.; Venkatramani, R.; Kolthur-Seetharam, U.

10.1101/420000 — cell biology — Posted on 2018-09-20

1004 PI31 is an adaptor protein for proteasome transport

Liu, K.; Jones, S.; Minis, A.; Rodriguez, J.; Molina, H.; Steller, H.

10.1101/364463 — cell biology — Posted on 2018-09-20

1005 An explorable public transcriptomics compendium for eukaryotic microalgae

Ashworth, J.; Ralph, P. J.

10.1101/403063 — systems biology — Posted on 2018-09-19

1006 The RNA-Binding Protein DND1 Acts Sequentially as a Negative Regulator of Pluripotency and a Positive Regulator of Epigenetic Modifiers Required for Germ Cell Reprogramming

Ruthig, V. A.; Friedersdorf, M. B.; Garness, J. A.; Munger, S. C.; Bunce, C.; Keene, J. D.; Capel, B.

10.1101/402008 — cell biology — Posted on 2018-09-19

1007 Bayesian detection of convergent rate changes of conserved noncoding elements on phylogenetic trees

Hu, Z.; Sackton, T. B.; Edwards, S. V.; Liu, J. S.

10.1101/260745 — evolutionary biology — Posted on 2018-09-19

1008 Systematic Prediction of Regulatory Motifs from Human ChIP-Sequencing Data Based on a Deep Learning Framework

Yang, J.; Hoppe, A. D.; Liu, B.; Ma, Q.

10.1101/417378 — bioinformatics — Posted on 2018-09-19

1009 Insulin-Producing Cells Monitor the Temperature and Compensate for Cold-Induced Sleep in Drosophila

Zhang, X.; Cui, X.; Zhu, D.

10.1101/419200 — neuroscience — Posted on 2018-09-19

1010 Theta-Gamma Cascades and Running Speed

Sheremet, A.; Kennedy, J.; Qin, Y.; Zhou, Y.; Lovett, S. D.; Burke, S. N.; Maurer, A. P.

10.1101/422246 — neuroscience — Posted on 2018-09-19

1011 Emergent oscillations in dense adaptive cell populations

Wang, S.-W.; Tang, L.-H.

10.1101/421586 — biophysics — Posted on 2018-09-19

1012 Local PCA shows how the effect of population structure differs along the genome

Li, H.; Ralph, P.

10.1101/070615 — genomics — Posted on 2018-09-19

1013 Multi-scale periodicities in the functional brain networks of patients with epilepsy and their effect on seizure detection

Mitsis, G. D.; Anastasiadou, M. N.; Christodoulakis, M.; Papathanasiou, E. S.; Papacostas, S. S.; Hadjipapas, A.

10.1101/221036 — bioengineering — Posted on 2018-09-19

1014 The 100-plus Study of Dutch cognitively healthy centenarians: rationale, design and cohort description

Holstege, H.; Beker, N.; Dijkstra, T.; Pieterse, K.; Wemmenhove, E.; Schouten, K.; Thiessens, L.; Horsten, D.; Rechtuijt, S.; Sikkes, S.; van Poppel, F.; Meijers-Heijboer, H.; Hulsman, M.; Scheltens, P.

10.1101/295287 — neuroscience — Posted on 2018-09-19

1015 Causal Evidence for the Dependence of the Magnitude Effect on Dorsolateral Prefrontal Cortex

Ballard, I. C.; Aydogan, G.; Kim, B.; McClure, S.

10.1101/306746 — neuroscience — Posted on 2018-09-19

1016 Deciphering eukaryotic cis-regulatory logic with 100 million random promoters

de Boer, C.; Vaishnav, E. D.; Sadeh, R.; Abeyta, E. L.; Friedman, N.; Regev, A.

10.1101/224907 — genomics — Posted on 2018-09-19

1017 Integrin-mediated attachment of the blastoderm to the vitelline envelope impacts gastrulation of insects

Munster, S.; Jain, A.; Mietke, A.; Pavlopoulos, A.; Grill, S. W.; Tomancak, P.

10.1101/421701 — developmental biology — Posted on 2018-09-19

1018 Evaluation of endothelial nitric oxide synthase gene expression in mice genetically heterozygous in Cx43 (Cx43 + / - mice)

Wilfred, O.

10.1101/421784 — cell biology — Posted on 2018-09-19

1019 Expression of TorsinA in a heterologous yeast system reveals interactions with conserved lumenal domains of LINC and nuclear pore complexes

Chalfant, M.; Barber, K. W.; Borah, S.; Thaller, D.; Lusk, C. P.

10.1101/421909 — cell biology — Posted on 2018-09-19

1020 RELION-3: new tools for automated high-resolution cryo-EM structure determination

Zivanov, J.; Nakane, T.; Forsberg, B.; Kimanius, D.; Hagen, W. J. H.; Lindahl, E.; Scheres, S. H. W.

10.1101/421123 — biophysics — Posted on 2018-09-19

1021 Does alpha-tocopherol flip-flop help to protect membranes against oxidation?

Boonnoy, P.; Karttunen, M.; Wong-ekkabut, J.

10.1101/422006 — biophysics — Posted on 2018-09-19

1022 The elemental mechanism of transcriptional pausing

Saba, J.; Chua, X.; Mishanina, T. V.; Nayak, D.; Windgassen, T. A.; Mooney, R. A.; Landick, R.

10.1101/422220 — biochemistry — Posted on 2018-09-19

1023 RAB18 impacts autophagy via lipid droplet-derived lipid transfer and is rescued by ATG9A

Kern, A.; Bekbulat, F.; Schmitt, D.; Feldmann, A.; Huesmann, H.; Eimer, S.; Juretschke, T.; Beli, P.; Behl, C.

10.1101/421677 — cell biology — Posted on 2018-09-19

1024 Bidirectional Control of Coronary Vascular Resistance by Eicosanoids via a Novel GPCR

Alkayed, N. J.; Cao, Z.; Qian, Z. Y.; Nagarajan, S.; Liu, X.; Nelson, J.; Xie, F.; Li, B.; Fan, W.; Liu, L.; Grafe, M. R.; Xiao, X.; Barnes, A. P.; Kaul, S.

10.1101/420406 — physiology — Posted on 2018-09-19

1025 Peripheral mitochondrial function correlates with clinical severity in idiopathic Parkinson’s disease

Milanese, C.; Payan-Gomez, C.; Galvani, M.; Molano Gonzalez, N.; Tresini, M.; Nait Abdellah, S.; van Roon-Mom, W. M. C.; Figini, S.; Marinus, J.; van Hilten, J. J.; Mastroberardino, P. G.

10.1101/422089 — neuroscience — Posted on 2018-09-19

1026 Traumatic brain injury-associated microglia adopt longitudinal transcriptional changes consistent with long-term depression of synaptic strength

Makinde, H. M.; Just, T. B.; Winter, D. R.; Schwulst, S. J.

10.1101/422071 — neuroscience — Posted on 2018-09-19

1027 Mycophenolate mofetil increases susceptibility toopportunistic fungal infection independent of lymphocytes

Gibson, R. H.; Evans, R.; Hotham, R.; Bojarczuk, A.; Lewis, A.; Bielska, E.; May, R. C.; Elks, P.; Renshaw, S. A.; Johnston, S. A.

10.1101/131540 — immunology — Posted on 2018-09-19

1028 Noise-driven cell differentiation and the emergence of spatiotemporal patterns

Safdari, H.; Kalirad, A.; Picioreanu, C.; Tusserkani, R.; Goliaei, B.; Sadeghi, M.

10.1101/220525 — developmental biology — Posted on 2018-09-19

1029 Computational Luminance Constancy from Naturalistic Images

Singh, V.; Cottaris, N. P.; Heasly, B. S.; Brainard, D. H.; Burge, J.

10.1101/358671 — neuroscience — Posted on 2018-09-19

1030 Liquefaction of the brain following stroke shares a similar molecular and morphological profile with atherosclerosis and mediates secondary neurodegeneration in an osteopontin dependent mechanism

Chung, A.; Frye, J.; Zbesko, J. C.; Constantopoulos, E.; Hayes, M. I.; Figueroa, A. G.; Becktel, D. A.; Day, W. A.; Konhilas, J. P.; McKay, B. S.; Nguyen, T.-V. V.; Doyle, K. P.

10.1101/264275 — neuroscience — Posted on 2018-09-19

1031 Bayesian tip dating reveals heterogeneous morphological clocks in Mesozoic birds

Zhang, C.; Wang, M.

10.1101/350496 — evolutionary biology — Posted on 2018-09-19

1032 Hawkmoth flight in the unsteady wakes of flowers

Matthews, M.; Sponberg, S.

10.1101/264762 — animal behavior and cognition — Posted on 2018-09-19

1033 Cancer In The News: Bias And Quality In Media Reporting Of Cancer Research.

Amberg, A.; Saunders, D. N.

10.1101/388488 — scientific communication and education — Posted on 2018-09-19

1034 Representations of evidence for a perceptual decision in the human brain

Bitzer, S.; Park, H.; Maess, B.; von Kriegstein, K.; Kiebel, S.

10.1101/350876 — neuroscience — Posted on 2018-09-19

1035 A Pentatricopeptide Repeat Protein in the Plasmodium apicoplast is essential and shows sequence-specific RNA binding

Hicks, J.; Lassadi, I.; Carpenter, E.; Eno, M.; Vardakis, A.; Waller, R. F.; Howe, C.; Nisbet, R. E. R.

10.1101/388728 — microbiology — Posted on 2018-09-19

1036 Education, intelligence and Alzheimer’s disease: Evidence from a multivariable two-sample Mendelian randomization study

Anderson, E. L.; Howe, L. D.; Wade, K. H.; Ben-Shlomo, Y.; Hill, W. D.; Deary, I. J.; Sanderson, E. C.; Zheng, J.; Korologou-Linden, R.; Stergiakouli, E.; Davey Smith, G.; Davies, N. M.; Hemani, G.

10.1101/401042 — genetics — Posted on 2018-09-19

1037 Superresolution architecture of pluripotency guarding adhesions

Stubb, A.; Guzman, C.; Närvä, E.; Aaron, J.; Chew, T.-L.; Saari, M.; Miihkinen, M.; Jacquemet, G.; Ivaska, J.

10.1101/402305 — cell biology — Posted on 2018-09-19

1038 A non-spatial account of place and grid cells based on clustering models of concept learning

Mok, R. M.; Love, B. C.

10.1101/421842 — neuroscience — Posted on 2018-09-19

1039 Improved high-quality genome assembly and annotation of Tibetan hulless barley

Nyima, T.; Zeng, X.; Li, X.; Bai, L.; Wang, Y.; Xu, T.; Yuan, H.; Xu, Q.; Zha, S.; Wei, Z.; Qimei, W.; Basang, Y.; Dunzhu, J.; Yu, M.

10.1101/409136 — genomics — Posted on 2018-09-19

1040 Coverage-versus-Length plots, a simple quality control step for de novo yeast genome sequence assemblies

Douglass, A. P.; O'Brien, C. E.; Offei, B.; Coughlan, A. Y.; Ortiz-Merino, R. A.; Butler, G.; Byrne, K. P.; Wolfe, K. H.

10.1101/421347 — genomics — Posted on 2018-09-19

1041 A novel core genome approach to enable prospective and dynamic monitoring of infectious outbreaks

van Aggelen, H. C.; Kolde, R.; Chamarthi, H.; Fan, Y.; Fallon, J. T.; Huang, W.; Wang, G.; Fortunato-Habib, M. M.; Carmona, J. J.; Gross, B. D.

10.1101/421388 — bioinformatics — Posted on 2018-09-19

1042 A TauP301L mouse model of dementia; development of pathology, synaptic transmission, microglial response and cognition throughout life

Joel, Z.; Izquierdo, P.; Liu, W.; Hall, C. M.; Roberts, M.; Yap, K.; Nick, A.; Spowart, E.; Desai, R.; Muessig, L.; Steinberg, R.; Martin, S.; Smith, K. J.; Richardson, J. C.; Cacucci, F.; Salih, D. A.; Cummings, D. M.; Edwards, F. A.

10.1101/420398 — neuroscience — Posted on 2018-09-19

1043 Multi-Omic Profiling Reveals Dynamics of the Phased Progression of Pluripotency

Yang, P.; Humphrey, S. J.; Cinghu, S.; Pathania, R.; Oldfield, A. J.; Kumar, D.; Perera, D.; Yang, J. Y. H.; James, D. E.; Mann, M.; Jothi, R.

10.1101/415430 — genomics — Posted on 2018-09-19

1044 Molecular mechanism of off-target effects in CRISPR-Cas9

Ricci, C. G.; Chen, J. S.; Miao, Y.; Jinek, M.; Doudna, J. A.; McCammon, J. A.; Palermo, G.

10.1101/421537 — biophysics — Posted on 2018-09-19

1045 Pharmacokinetics, Side Effects, and Anti-Hyperalgesic Efficacy of The Mglu5 Antagonist Fenobam.

Cavallone, L. F.; Montana, M. C.; Frey, K.; Kallogjeri, D.; Wages, J. M.; Rodebaugh, T. L.; Doshi, T.; Kharasch, E. D.; Gereau, R. W.

10.1101/391383 — neuroscience — Posted on 2018-09-19

1046 High dispersal levels and lake warming are emergent drivers of cyanobacterial community assembly over the Anthropocene in peri-Alpine lakes

Monchamp, M.-E.; Spaak, P.; Pomati, F.

10.1101/419762 — ecology — Posted on 2018-09-19

1047 Temperate grass allergy season defined by spatio-temporal shifts in airborne pollen communities

Brennan, G. L.; Potter, C.; de Vere, N.; Griffith, G. W.; Skjoth, C. A.; Osborne, N. J.; Wheeler, B. W.; McInnes, R. N.; Clewlow, Y.; Barber, A.; Hanlon, H. M.; Hegarty, M.; Jones, L.; Kurganskiy, A.; Rowney, F. M.; Armitage, C.; Adams-Groom, B.; Ford, C. R.; Petch, G. M.; The PollerGEN Consortium, ; Creer, S.

10.1101/410829 — ecology — Posted on 2018-09-19

1048 rMETL: sensitive and fast mobile element insertion detection with long read realignment

Jiang, T.; Liu, B.; Wang, Y.

10.1101/421560 — bioinformatics — Posted on 2018-09-19

1049 Recruit symbiosis establishment and Symbiodiniceae composition influenced by adult corals and reef sediment

Ali, A.; Nicola, N. G.; Emery, L. E.; Kenkel, C. D.; Matz, M. V.; Davies, S. W.

10.1101/421339 — zoology — Posted on 2018-09-19

1050 Hierarchical structure and memory retrieval mechanisms in agreement attraction

Franck, J.; Wagers, M.

10.1101/422139 — neuroscience — Posted on 2018-09-19

1051 Effects of rising amyloidβ on hippocampal synaptic transmission, microglial response and cognition in APPSwe/PSEN1M146V transgenic mice

Medawar, E.; Benway, T.; Liu, W.; Hanan, T. A.; Haslehurst, P.; James, O. T.; Muessig, L.; Moroni, F.; Nahaboo Solim, M. A.; Baidildinova, G.; Richardson, J. C.; Cacucci, F.; Salih, D. A.; Cummings, D. M.; Edwards, F. A.

10.1101/420349 — neuroscience — Posted on 2018-09-19

1052 Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis

Graham, S. E.; Nielsen, J. B.; Zawistowski, M.; Zhou, W.; Fritsche, L. G.; Gabrielsen, M. E.; Skogholt, A. H.; Surakka, I.; Fermin, D.; Kheterpal, S.; Brummett, C. M.; Lee, S.; Kang, H. M.; Abecasis, G. R.; Romundstad, S.; Hallan, S.; Sampson, M. G.; Hveem, K.; Willer, C.

10.1101/421552 — genomics — Posted on 2018-09-19

1053 Rapid And Repeated Local Adaptation To Climate In An Invasive Plant

van Boheemen, L. A.; Atwater, D. Z.; Hodgins, K. A.

10.1101/420752 — evolutionary biology — Posted on 2018-09-19

1054 Human Migration and the Spread of the Nematode Parasite Wuchereria bancrofti

Small, S. T.; Labbe, F.; Coulibaly, Y. I.; Nutman, T. B.; King, C. L.; Serre, D.; Zimmerman, P. A.

10.1101/421248 — evolutionary biology — Posted on 2018-09-19

1055 Bayesian Trees for Automated Cytometry Data Analysis

Ji, D.; Nalisnick, E.; Qian, Y.; Scheuermann, R. H.; Smyth, P.

10.1101/414904 — bioinformatics — Posted on 2018-09-19

1056 Intuitive planning: global navigation through cognitive maps based on grid-like codes

Baram, A. B.; Muller, T. H.; Whittington, J. C. R.; Behrens, T. E. J.

10.1101/421461 — neuroscience — Posted on 2018-09-19

1057 Sfp1 regulates transcriptional networks driving cell growth and division through multiple promoter binding modes

Albert, B.; Tomassetti, S.; Gloor, Y.; Dilg, D.; Mattarocci, S.; Kubik, S.; Shore, D.

10.1101/420794 — molecular biology — Posted on 2018-09-19

1058 De novo assembly and annotation of the larval transcriptome of two spadefoot toads widely divergent in developmental rate

Liedtke, H. C.; Gomez Garrido, J.; Esteve-Codina, A.; Gut, M.; Alioto, T.; Gomez-Mestre, I.

10.1101/421446 — genomics — Posted on 2018-09-19

1059 Distinct spread of DNA and RNA viruses among mammals amid prominent role of domestic species

Wells, K.; Morand, S.; wardeh, m.; Baylis, M.

10.1101/421511 — ecology — Posted on 2018-09-19

1060 wnt4a Promotes Female Development and Reproductive Duct Elongation in Zebrafish

Draper, B. W.; Kossack, M. E.; High, S. K.; Hopton, R. E.; Yan, Y.-l.; Postlethwait, J. H.

10.1101/421362 — developmental biology — Posted on 2018-09-19

1061 SplicedFamAlign: CDS-to-gene spliced alignment and identification of transcript orthology groups

Jammali, S.; Aguilar, J.-D.; Kuitche, E.; Ouangraoua, A.

10.1101/420307 — bioinformatics — Posted on 2018-09-19

1062 Can machine learning assess trunk alignment directly from raw video?

Sanchez, M. B.; Loram, I.; Cunningham, R.; Butler, P. B.

10.1101/421172 — bioengineering — Posted on 2018-09-19

1063 Engineered variants provide new insight into the structural properties important for activity of the highly dynamic, trimeric protein disulfide isomerase, PmScsC

Furlong, E. J.; Kurth, F.; Premkumar, L.; Whitten, A. E.; Martin, J. L.

10.1101/421420 — biochemistry — Posted on 2018-09-19

1064 A non-spatial account of place and grid cells based on clustering models of concept learning

Mok, R. M.; Love, B. C.

10.1101/421842 — neuroscience — Posted on 2018-09-19

1065 How the level of reward awareness changes the computational and electrophysiological signatures of reinforcement learning

Correa, C.; Noorman, S.; Jiang, J.; Palminteri, S.; Cohen, M. X.; Lebreton, M.; van Gaal, S.

10.1101/421743 — neuroscience — Posted on 2018-09-19

1066 Neural correlates of reward anticipation in 2000 children aged 9-10 years: relation to psychotic-like experiences and depressive symptoms

Ronan, L.; Murray, G. K.

10.1101/421826 — neuroscience — Posted on 2018-09-19

1067 Transcriptome profiles and novel lncRNA identification of Aedes aegypti cells in response to dengue virus serotype 1

Azlan, A.; Obeidat, S. M.; Yunus, M. A.; Azzam, G.

10.1101/422170 — genetics — Posted on 2018-09-19

1068 Network of small no-take marine reserves reveal greater abundance and body size of fisheries target species

Rolim, F. A.; Langlois, T.; Rodrigues, P. F. C.; Bond, T.; Motta, F. d. S.; Neves, L. M.; Gadig, O. B. F.

10.1101/422147 — ecology — Posted on 2018-09-19

1069 Analysis of brain network dynamics estimated from fMRI data: A new framework based on communicability and flow

Gilson, M.; Kouvaris, N. E.; Deco, G.; Mangin, J.-F.; Poupon, C.; Lefranc, S.; Riviere, D.; Zamora-Lopez, G.

10.1101/421883 — neuroscience — Posted on 2018-09-19

1070 Drosophila insulin-like peptide 1 (DILP1) promotes organismal growth during non-feeding stages

Liao, S.; Post, S.; Veenstra, J. A.; Tatar, M.; Nassel, D. R.

10.1101/421669 — neuroscience — Posted on 2018-09-19

1071 Semantic context enhances neural envelope tracking

Verschueren, E.; Vanthornhout, J.; Francart, T.

10.1101/421727 — neuroscience — Posted on 2018-09-19

1072 Profile of the tprK gene in primary syphilis patients based on next-generation sequencing

Liu, D.; Tong, M.-L.; Luo, X.; Liu, L.-L.; Lin, L.-R.; Zhang, H.-L.; Lin, Y.; Niu, J.-J.; Yang, T.-C.

10.1101/422162 — microbiology — Posted on 2018-09-19

1073 Adopting Literature-based Discovery on Rehabilitation Therapy Repositioning for Stroke

Meng, G.; Huang, Y.; Yu, Q.; Ding, Y.; Wild, D.; Zhao, Y.; Song, M.; Liu, X.

10.1101/422154 — bioinformatics — Posted on 2018-09-19

1074 When higher carrying capacities lead to faster propagation

Haond, M.; Morel-Journel, T.; Lombaert, E.; Vercken, E.; Mailleret, L.; Roques, L.

10.1101/307322 — ecology — Posted on 2018-09-19

1075 Leaps and bounds: geographical and ecological distance constrained the colonisation of the Afrotemperate by Erica

Pirie, M. D.; Kandziora, M.; Nuerk, N. M.; Le Maitre, N. C.; Mugrabi de Kuppler, A. L.; Gehrke, B.; Oliver, E. G. H.; Bellstedt, D. U.

10.1101/290791 — evolutionary biology — Posted on 2018-09-19

1076 Temporal pattern separation in hippocampal neurons through multiplexed neural codes

Madar, A. D.; Ewell, L. A.; Jones, M. V.

10.1101/421479 — neuroscience — Posted on 2018-09-19

1077 Identification of traits and functional connectivity-based neuropsychotypes of chronic pain

Vachon-Presseau, E.; Berger, S. E.; Abdullah, T. B.; Griffith, J. W.; Schnitzer, T. J.; Apkarian, A. V.

10.1101/421438 — neuroscience — Posted on 2018-09-19

1078 Brain-derived neurotrophic factor and TrkB levels in mice that lack vesicular zinc: Effects of age and sex

McAllister, B. B.; Bihelek, N.; Dyck, R. H.

10.1101/421453 — neuroscience — Posted on 2018-09-19

1079 Opposing roles of dopamine receptor D1- and D2-expressing neurons in the anteromedial olfactory tubercle in acquisition of place preference in mice

Murata, K.; Kinoshita, T.; Fukazawa, Y.; Kobayashi, K.; Yamanaka, A.; Hikida, T.; Manabe, H.; Yamaguchi, M.

10.1101/421602 — neuroscience — Posted on 2018-09-19

1080 Maps of variability in cell lineage trees

Hicks, D. G.; Speed, T. P.; Yassin, M.; Russell, S. M.

10.1101/267450 — systems biology — Posted on 2018-09-18

1081 Inverse occlusion, a binocularly motivated treatment for amblyopia

Zhou, J.; Wu, Y.; Chen, Y.; Chen, X.; Liang, Y.; Mao, Y.; Yao, Z.; He, Z.; Lu, F.; Qu, J.; Hess, R.

10.1101/418871 — neuroscience — Posted on 2018-09-18

1082 Effects of dietary replacement of broiler litter with Mucuna pruriens utilis forage and seed meal on performance, carcass characteristics, blood biochemical and physiological parameters in indigenous goats

Mthiyane, D. M. N.; Gamedze, N. P.; Dlamini, A. M.; Hugo, A.; Nsahlai, I. V.

10.1101/421313 — physiology — Posted on 2018-09-18

1083 Functional characterization of retinal ganglion cells using tailored nonlinear modeling

Shi, Q.; Gupta, P.; Boukhvalova, A.; Singer, J. H.; Butts, D. A.

10.1101/421396 — neuroscience — Posted on 2018-09-18

1084 Dissociating addiction-related endophenotypes: Incentive salience attribution, sensation-seeking and novelty-seeking are independent traits in male and female heterogeneous stock rats

Hughson, A. R.; Horvath, A. P.; Holl, K.; Palmer, A. A.; Solberg Woods, L. C.; Robinson, T. E.; Flagel, S. B.

10.1101/421065 — animal behavior and cognition — Posted on 2018-09-18

1085 Evolution of phenotypic plasticity in response to ethanol between sister species with different ecological histories (Drosophila melanogaster and D. simulans)

Signor, S.; Nuzhdin, S.

10.1101/386334 — evolutionary biology — Posted on 2018-09-18

1086 Neural representations of aversive value encoding in pain catastrophizers

Brown, C.; Almarzouki, A. F.; Brown, R. J.; Jones, A. K.

10.1101/279992 — neuroscience — Posted on 2018-09-18

1087 Neandertal signatures in modern human mitochondrial genome haplogroups?

Ferreira, R. C.; Rodrigues, C. R.; Broach, J. R.; Briones, M. R.

10.1101/190363 — genomics — Posted on 2018-09-18

1088 Tensorflow Based Deep Learning Model and Snakemake Workflow for Peptide-Protein Binding Predictions

Altay, G.

10.1101/410928 — bioinformatics — Posted on 2018-09-18

1089 Cross-type Biomedical Named Entity Recognition with Deep Multi-Task Learning

Wang, X.; Zhang, Y.; Ren, X.; Zhang, Y.; Zitnik, M.; Shang, J.; Langlotz, C.; Han, J.

10.1101/256453 — bioinformatics — Posted on 2018-09-18

1090 Co-option of neurotransmitter signaling for inter-organismal communication in C. elegans

Srinivasan, J.; Chute, C. D.; Diloreto, E.; Zhang, Y. K.; Rayes, D.; Coyle, V.; Choi, H. J.; Alkema, M.; Schroeder, F. C.

10.1101/275693 — neuroscience — Posted on 2018-09-18

1091 Temporal resolution of single photon responses in primate rod photoreceptors and limits imposed by cellular noise

Field, G. D.; Uzzell, V.; Chichilnisky, E. J.; Rieke, F.

10.1101/421263 — neuroscience — Posted on 2018-09-18

1092 The GATOR complex regulates an essential response to meiotic double-stranded breaks in Drosophila

Wei, Y.; Bettedi, L.; Kim, K.; Ting, C.-Y.; Lilly, M.

10.1101/421206 — developmental biology — Posted on 2018-09-18

1093 How phage L capsid decoration protein distinguishes between nearly identical binding sites on an icosahedral virion

Newcomer, R. L.; Schrad, J. R.; Gilcrease, E. B.; Casjens, S. R.; Feig, M.; Teschke, C. M.; Alexandrescu, A.; Parent, K. N.

10.1101/420992 — biophysics — Posted on 2018-09-18

1094 Penetrance and pleiotropy of polygenic risk scores for schizophrenia in 90,000 patients across three healthcare systems

Zheutlin, A. B.; Dennis, J.; Restrepo, N.; Straub, P.; Ruderfer, D.; Castro, V. M.; Chen, C.-Y.; Kirchner, H. L.; Chabris, C. F.; Davis, L. K.; Smoller, J. W.

10.1101/421164 — genetics — Posted on 2018-09-18

1095 Cryptography for genetic material

Sawaya, S.

10.1101/157685 — genetics — Posted on 2018-09-18

1096 Cooperative changes in solvent exposure identify cryptic pockets, conformational switches, and allosteric coupling

Porter, J. R.; Moeder, K. E.; Sibbald, C. A.; Zimmerman, M. I.; Hart, K. M.; Greenberg, M. J.; Bowman, G. R.

10.1101/323568 — biophysics — Posted on 2018-09-18

1097 Action-specific feature processing in the human visual cortex

Monaco, S.; Chen, Y.; Menghi, N.; Crawford, J. D.

10.1101/420760 — neuroscience — Posted on 2018-09-18

1098 Using Arterial Spin Labelling to Investigate Spontaneous and Evoked Ongoing Musculoskeletal Pain

Wartolowska, K. A.; Bulte, D. P.; Chappell, M. A.; Jenkinson, M.; Okell, T. W.; Webster, M.; Carr, A. J.

10.1101/163196 — neuroscience — Posted on 2018-09-18

1099 Prediction of post-vaccine population structure of Streptococcus pneumoniae using accessory gene frequencies

Azarian, T.; Martinez, P. P. P.; Arnold, B. J.; Grant, L. R.; Corander, J.; Fraser, C.; Croucher, N.; Hammitt, L.; Reed, R.; Santosham, M.; Weatherholtz, R. R.; Bentley, S. D.; O'Brien, K. L.; Lipsitch, M.; Hanage, W. P.

10.1101/420315 — evolutionary biology — Posted on 2018-09-18

1100 How optimal foragers should respond to habitat changes? On the consequences of habitat conversion.

Calcagno, V.; Hamelin, F.; Mailleret, L.; Grognard, F.

10.1101/273557 — ecology — Posted on 2018-09-18

1101 ProTargetMiner: A proteome signature library of anticancer molecules for functional discovery

Saei, A. A.; Chernobrovkin, A.; Sabatier, P.; Zhang, B.; Beusch, C.; Guler Tokat, U.; Gaetani, M.; Vegvari, A.; Zubarev, R.

10.1101/421115 — cell biology — Posted on 2018-09-18

1102 Anoxygenic Photosynthesis and Dark Carbon Metabolism under micro-oxic conditions in the Purple Sulfur Bacterium \"Thiodictyon syntrophicum\" nov. strain Cad16T

Luedin, S. M.; Storelli, N.; Danza, F.; Roman, S.; Wittwer, M.; Pothier, J. F.; Tonolla, M.

10.1101/420927 — microbiology — Posted on 2018-09-18

1103 Post-Hurricane Vital Statistics Expose Fragility of Puerto Rico’s Health System

Acosta, R. J.; Irizarry, R. A.

10.1101/407874 — epidemiology — Posted on 2018-09-18

1104 High accuracy measurements of nanometer-scale distances between fluorophores at the single-molecule level

Niekamp, S.; Sung, J.; Huynh, W.; Bhabha, G.; Vale, R. D.; Stuurman, N.

10.1101/234740 — biophysics — Posted on 2018-09-18

1105 Re-assembly, quality evaluation, and annotation of 678 microbial eukaryotic reference transcriptomes

Johnson, L. K.; Alexander, H.; Brown, C. T.

10.1101/323576 — bioinformatics — Posted on 2018-09-18

1106 Genomic profiling of T cell activation reveals dependency of memory T cells on CD28 costimulation

Glinos, D. A.; Soskic, B.; Jostins, L.; Sansom, D. M.; Trynka, G.

10.1101/421099 — genomics — Posted on 2018-09-18

1107 Trans-ethnic genome-wide association study provides insight into effector genes and molecular mechanisms for kidney function and highlights a causal effect on kidney-specific disease aetiologies

Morris, A. P.; Le, T. H.; Wu, H.; Akbarov, A.; van der Most, P. P.; Mahajan, A.; Hemani, G.; Gaulton, K. J.; Nadkarni, G.; Valladares-Salgado, A.; Wacher-Rodarte, N.; Mychaleckyj, J. C.; Dueker, N. D.; Guo, X.; Hai, Y.; Haessler, J.; Kamatani, Y.; Stilp, A.; Zhu, G.; Cook, J. P.; Arnlov, J.; Blanton, S. H.; de Borst, M.; Bottinger, E. P.; Buchanan, T. A.; Charchar, F. J.; Damman, J.; Eales, J. M.; Gharavi, A. G.; Giedraitis, V.; Heath, A. C.; Ipp, E.; Kiryluk, K.; Kubo, M.; Larsson, A.; Lindgren, C.; Lu, Y.; Madden, P. A.; Kramer, H. J.; Montgomery, G. W.; Papanicolaou, G. J.; Raffel, L. J.; S

10.1101/420273 — genetics — Posted on 2018-09-18

1108 When higher carrying capacities lead to faster propagation

Haond, M.; Morel-Journel, T.; Lombaert, E.; Vercken, E.; Mailleret, L.; Roques, L.

10.1101/307322 — ecology — Posted on 2018-09-18

1109 The extracellular gate shapes the energy profile of an ABC exporter

Hutter, C. A. J.; Timachi, M. H.; Hürlimann, L. M.; Zimmermann, I.; Egloff, P.; Göddeke, H.; Kucher, S.; Stefanic, S.; Karttunen, M.; Schäfer, L. V.; Bordignon, E.; Seeger, M. A.

10.1101/421073 — biochemistry — Posted on 2018-09-18

1110 Surface color and predictability determine contextual modulation of V1 firing and gamma oscillations

Peter, A.; Uran, C.; Klon-Lipok, J.; Roese, R.; van Stijn, S.; Barnes, W.; Dowdall, J. R.; Singer, W.; Fries, P.; Vinck, M.

10.1101/421040 — neuroscience — Posted on 2018-09-18

1111 Transient and sustained control mechanisms supporting novel instructed behavior.

Palenciano, A. F.; Gonzalez-Garcia, C.; Arco, J. E.; Ruz, M.

10.1101/341818 — neuroscience — Posted on 2018-09-18

1112 Dynamic recovery from depression enables rate encoding in inhibitory synapses

Huang, S.; Bridi, M.; Kirkwood, A.

10.1101/379081 — neuroscience — Posted on 2018-09-18

1113 Ancestry specific association mapping in admixed populations

Skotte, L.; Joersboe, E.; Korneliussen, T. S. S.; Moltke, I.; Albrechtsen, A.

10.1101/014001 — genetics — Posted on 2018-09-18

1114 The effect of the stress hormone cortisol on the metatranscriptome of the oral microbiome

Duran-Pinedo, A. E.; Solbiati, J.; Frias-Lopez, J.

10.1101/339325 — microbiology — Posted on 2018-09-18

1115 Selective inhibition of CA IX over CA XII using benzene sulfonamides in breast cancer cells: Disconnect between CA activity and growth inhibition

Mboge, M. Y.; Chen, Z.; Wolff, A.; Mathias, J. V.; Tu, C.; Brown, K. D.; Bozdag, M.; Carta, F.; Supuran, C. T.; McKenna, R.; Frost, S. C.

10.1101/345298 — cancer biology — Posted on 2018-09-18

1116 Vascular brassinosteroid receptors confer drought resistance without penalizing plant growth

10.1101/318287 — plant biology — Posted on 2018-09-18

1117 Do mechanical strain magnitude and rate drive bone adaptation in adult women? A 12-month prospective study.

Troy, K.; Mancuso, M.; Johnson, J.; Wu, Z.; Schnitzer, T. J.; Butler, T. A.

10.1101/421156 — physiology — Posted on 2018-09-18

1118 Single-Cell Analysis Identifies Thymic Maturation Delay in Growth-Restricted Neonatal Mice

Bacon, W. A.; Hamilton, R. S.; Yu, Z.; Kieckbusch, J.; Hawkes, D.; Krzak, A.; Abell, C.; Colucci, F.; Charnock-Jones, D. S.

10.1101/372862 — developmental biology — Posted on 2018-09-18

1119 A GABAergic Maf-expressing interneuron subset regulates the speed of locomotion in Drosophila

Babski, H.; Surel, C.; Shingo, Y.; Valmier, J.; Thomas, J. B.; Carroll, P.; Garces, A.

10.1101/421057 — neuroscience — Posted on 2018-09-18

1120 Different neural networks for conceptual retrieval in sighted and blind reveal the experiential bases of knowledge.

BOTTINI, R.; Ferraro, S.; Nigri, A.; Cuccarini, V.; Bruzzone, M. G.; Collignon, O.

10.1101/384552 — neuroscience — Posted on 2018-09-18

1121 Competition for hosts modulates vast antigenic diversity to generate persistent strain structure in Plasmodium falciparum

Pilosof, S.; He, Q.; Tiedje, K. E.; Ruybal-Pesantez, S.; Day, K.; Pascual, M.

10.1101/406546 — ecology — Posted on 2018-09-18

1122 Interspecific plant competition mediates impact of climate change on the ecophysiology of a plant-herbivore interaction.

Van De Velde, H.; AbdElgawad, H.; Asard, H.; Beemster, G.; Selim, S.; Nijs, I.; Bonte, D.

10.1101/420901 — ecology — Posted on 2018-09-18

1123 Different capsid-binding patterns of the β-herpesvirus-specific tegument protein pp150 (pM32/pUL32) in murine and human cytomegaloviruses

Liu, W.; Zhou, H.; Dai, X.; Jih, J.; Yu, X.; Liu, F.; Mei, Y.; Chan, K.; Trang, P.; Balogun, R.

10.1101/420604 — microbiology — Posted on 2018-09-18

1124 Multiple Toll-Spätzle Pathways in Drosophila melanogaster Immunity

Yu, X.-Q.; Chowdhury, M.; Li, C.-F.; He, Z.; Lu, Y.; Liu, X.; Wang, Y.; Ip, Y. T.; Strand, M. R.

10.1101/420679 — immunology — Posted on 2018-09-18

1125 A familial case of Syndactyly type IV due to a novel duplication of ~222.23 kb covering exons 2-17 of the LMBR1 gene: a case report

Shi, L.; Huang, H.; Jiang, Q.; Huang, R.; Fu, W.; Mao, L.; Wei, X.; Cui, H.; Lin, K.; Cai, L.; Yang, Y.; Wang, Y.; Wu, J.

10.1101/420588 — genetics — Posted on 2018-09-18

1126 Rapid And Repeated Local Adaptation To Climate In An Invasive Plant

van Boheemen, L. A.; Hodgins, K. A.; Atwater, D. Z.

10.1101/420752 — evolutionary biology — Posted on 2018-09-18

1127 Detecting overlapping spatial clusters of high sugar-sweetened beverage intake and high body mass index in a general population: a cross-sectional study

Joost, S.; De Ridder, D.; Marques-Vidal, P.; Bacchilega, B.; Theler, J.-M.; Gaspoz, J.-M.; Guessous, I.

10.1101/399584 — epidemiology — Posted on 2018-09-18

1128 Crowdsourced MRI quality metrics and expert quality annotations for training of humans and machines

Esteban, O.; Blair, R. W.; Nielson, D. M.; Varada, J. C.; Marrett, S.; Thomas, A.; Poldrack, R.; Gorgolewski, K. J.

10.1101/420984 — bioengineering — Posted on 2018-09-18

1129 PolyA tracks and poly-lysine repeats are the Achilles heel of Plasmodium falciparum

Pavlovic Djuranovic, S.; Erath, J.; Andrews, R. J.; Bayguinov, P. O.; Chung, J. J.; Chalker, D. L.; Fitzpatrick, J. A.; Moss, W. N.; Szczesny, P.; Djuranovic, S.

10.1101/420109 — microbiology — Posted on 2018-09-18

1130 Host defense triggers rapid adaptive radiation in experimentally evolving parasites

Bush, S. E.; Villa, S. M.; Altuna, J. C.; Johnson, K. P.; Shapiro, M. D.; Clayton, D. H.

10.1101/420380 — evolutionary biology — Posted on 2018-09-18

1131 Drilling down hotspots of intraspecific diversity to bring them into on-ground conservation of threatened species

Zampiglia, M.; Bisconti, R.; Maiorano, L.; Aloise, G.; Siclari, A.; Pellegrino, F.; Martino, G.; Pezzarossa, A.; Chiocchio, A.; Martino, C.; Nascetti, G.; Canestrelli, D.

10.1101/419788 — evolutionary biology — Posted on 2018-09-18

1132 lncDIFF: a novel distribution-free method for differential expression analysis of long non-coding RNA

Li, Q.; Yu, X.; Chaudhary, R.; Slebos, R. J.; Chung, C. H.; Wang, X.

10.1101/420562 — bioinformatics — Posted on 2018-09-18

1133 Functional retinal imaging using adaptive optics swept-source OCT at 1.6MHz

Azimipour, M.; Migacz, J. V.; Zawadzki, R. J.; Werner, J. S.; Jonnal, R. S.

10.1101/420240 — bioengineering — Posted on 2018-09-18

1134 Persistent alterations in plasma lipid profiles prior to introduction of gluten in the diet associate with progression to celiac disease

Sen, P.; Carlsson, C.; Virtanen, S. M.; Simell, S.; Hyöty, H.; Ilonen, J.; Toppari, J.; Veijola, R.; Hyötyläinen, T.; Knip, M.; Oresic, M.

10.1101/419416 — systems biology — Posted on 2018-09-18

1135 Logarithmic molecular sampling for next-generation sequencing

Salzman, J.; Horn, C.

10.1101/420299 — genomics — Posted on 2018-09-18

1136 Genomic sequence capture of haemosporidian parasites: Methods and prospects for enhanced study of host-parasite evolution

Barrow, L. N.; Allen, J. M.; Huang, X.; Bensch, S.; Witt, C. C.

10.1101/420414 — genomics — Posted on 2018-09-18

1137 Polygenicity of complex traits is explained by negative selection

O'Connor, L. J.; Schoech, A. P.; Hormozdiari, F.; Gazal, S.; Patterson, N.; Price, A. L.

10.1101/420497 — genetics — Posted on 2018-09-18

1138 High-glucose Induces Retinal Pigment Epithelium Mitochondrial Pathways of Apoptosis and Inhibits Mitophagy by Regulating ROS/PINK1/Parkin Signal Pathway

Yang, Y.; Zha, X.; Zhang, Y.; Xi, X.; Mei, Y.; Zhao, X.; Zhou, L.; Ma, M.; Liu, S.

10.1101/420653 — cell biology — Posted on 2018-09-18

1139 VAPiD: a lightweight cross platform viral annotation pipeline and identification tool to facilitate virus genome submissions to NCBI GenBank

Shean, R. C.; Makhsous, N.; Stoddard, G. D.; Lin, M. J.; Greninger, A. L.

10.1101/420463 — bioinformatics — Posted on 2018-09-18

1140 Meteorin-like (Metrnl) adipomyokine improves glucose tolerance in type 2 diabetes via AMPK pathway

Kim, H. S.; Lee, J. O.; Lee, H. J.; Lee, Y. W.; Han, J. A.; Kang, M. J.; Moon, J.; Shin, M.-J.; Lee, H. J.; Chung, J. H.; Lee, J.-S.; Son, C.-G.; Song, K.-H.; Kim, T. W.; Lee, E.-S.; Kim, H. M.; Chung, C. H.; Ngoei, K. R. W.; Ling, N. X. Y.; Oakhill, J. S.; Galic, S.; Segal, L. M.; Kemp, B. E. E.; Kim, K. M.; Lim, S.

10.1101/420489 — biochemistry — Posted on 2018-09-18

1141 The PCR Simulator: an on-line application for teaching Design of Experiments and the polymerase chain reaction

Fellermann, H.; Shirt-Ediss, B.; Kozyra, J. W.; Linsley, M.; Lendrem, D.; Howard, T.

10.1101/415042 — scientific communication and education — Posted on 2018-09-18

1142 Wide cross-species RNA-Seq comparison reveals a highly conserved role for Ferroportins in nickel hyperaccumulation in plants

Garcia de la Torre, V. S.; Majorel-Loulergue, C.; Gonzalez, D. A.; Soubigou-Taconnat, L.; Rigaill, G. J.; Pillon, Y.; Barreau, L.; Thomine, S.; Fogliani, B.; Burtet-Sarramegna, V.; Merlot, S.

10.1101/420729 — plant biology — Posted on 2018-09-18

1143 Initial Sequencing and Characterization of Gastrointestinal and Oral Microbiota in Urban Pakistani Adults Reveals Abnormally High Levels of Potentially Starch Metabolizing Bacteria in the General Population

Batool, M.; Ali, S. B.; Jaan, A.; Khalid, K.; Ali, S. A.; Kamal, K.; Raja, A. A.; Gul, F.; Pedroso, I.; Apte, Z.; Nasir, A.

10.1101/419598 — microbiology — Posted on 2018-09-18

1144 Impact of specimen age on its DNA quality for Formalin-Fixed Paraffin-Embedded HPV specimens

Park, J. Y.

10.1101/420224 — genomics — Posted on 2018-09-18

1145 Genomic epidemiology of syphilis reveals independent emergence of macrolide resistance across multiple circulating lineages

Beale, M. A.; Marks, M.; Sahi, S. K.; Tantalo, L. C.; Nori, A. V.; French, P.; Lukehart, S. A.; Marra, C. M.; Thomson, N. R.

10.1101/413161 — genomics — Posted on 2018-09-18

1146 Rediscovery of red wolf ghost alleles in a canid population along the American Gulf Coast

Heppenheimer, E.; Brzeski, K. E.; Wooten, R.; Waddell, W.; Rutledge, L. Y.; Chamberlain, M. J.; Stahler, D. R.; Hinton, J. W.; vonHoldt, B. M.

10.1101/420356 — genomics — Posted on 2018-09-18

1147 The effects of demography and genetics on the neutral distribution of quantitative traits

Koch, E.

10.1101/421008 — evolutionary biology — Posted on 2018-09-18

1148 Evolution of cation binding in the active sites of P-loop nucleoside triphosphatases

Shalaeva, D. N.; Cherepanov, D. A.; Galperin, M. Y.; Mulkidjanian, A.

10.1101/420133 — evolutionary biology — Posted on 2018-09-18

1149 Cancer3D 2.0: interactive analysis of 3D patterns of cancer mutations in cancer subsets

Sedova, M.; Iyer, M.; Li, Z.; Jaroszewski, L.; Post, K. W.; Hrabe, T.; Porta-Pardo, E.; Godzik, A.

10.1101/420521 — bioinformatics — Posted on 2018-09-18

1150 Tracking transient fluorescent events in structured point clouds

Amarteifio, S.; Fallesen, T.; Sena, G.; Pruessner, G.

10.1101/419572 — bioinformatics — Posted on 2018-09-18

1151 Population Structure of Leishmania using POPSICLE reveals extensive dichotomy in zygosity and discloses the role of sex in diversity of the parasite

Shaik, J.

10.1101/420323 — bioinformatics — Posted on 2018-09-18

1152 A simple, robust, and low-cost method to produce the PURE cell-free system

Lavickova, B.; Maerkl, S. J.

10.1101/420570 — synthetic biology — Posted on 2018-09-18

1153 Information and communication technology, mobile devices, and medical education

Rodriguez Rio, A.; Espinoza Tellez, G.; Martinez-Ezquerro, J. D.; Rendon-Macias, M. E.

10.1101/420281 — scientific communication and education — Posted on 2018-09-18

1154 Generation of four iPSC lines from peripheral blood mononuclear cells (PBMCs) of an Attention Deficit Hyperactivity Disorder (ADHD) individual and a healthy sibling in an Australia-Caucasian family

Tong, J.; Lee, K. M.; Liu, X.; Nefzger, C. M.; Vijayakumar, P.; Hawi, Z.; Pang, K. C.; Parish, C. L.; Polo, J. M.; Bellgrove, M. A.

10.1101/420505 — neuroscience — Posted on 2018-09-18

1155 Comprehensive analysis of intra- and interpatient evolution of enterovirus D68 by whole-genome deep sequencing

Dyrdak, R.; Mastafa, M.; Neher, R.; Albert, J.

10.1101/420836 — microbiology — Posted on 2018-09-18

1156 Identifying Changes in RNA Editome Unique to Major Depressive Disorder

Hasan, S.; Robbani, S. M.; Afroze, T.; Ahsan, G. U.; Hossain, M. M.

10.1101/419309 — genomics — Posted on 2018-09-18

1157 Variants in regulatory elements of PDE4D associate with Major Mental Illness in the Finnish population

Sinha, V.; Ukkola-Vuoti, L.; Ortega-Alonso, A.; Torniainen-Holm, M.; Therman, S.; Tuulio-Henriksson, A.; Jylhä, P.; Kaprio, J.; Hovatta, I.; Isometsä, E.; Cannon, T. D.; Lonnqvist, J.; Paunio, T.; Suvisaari, J.; Hennah, W.

10.1101/390518 — genetics — Posted on 2018-09-18

1158 Genetic hubs: a phylogeographer’s widget for pinpointing of ancestral populations

Mikula, O.

10.1101/419796 — evolutionary biology — Posted on 2018-09-18

1159 The Invariant Nature of a Morphological Character and Character State: Insights from Gene Regulatory Networks

Tarasov, S.

10.1101/420471 — evolutionary biology — Posted on 2018-09-18

1160 The joint evolution of lifespan and self-fertilisation

Lesaffre, T.; Billiard, S.

10.1101/420877 — evolutionary biology — Posted on 2018-09-18

1161 Cutting tree branches to pick OTUs: a novel method of provisional species delimitation

Mikula, O.

10.1101/419887 — evolutionary biology — Posted on 2018-09-18

1162 Impact of recreational fisheries management on fish biodiversity in gravel pit lakes with contrasts to unmanaged lakes

Matern, S.; Emmrich, M.; Klefoth, T.; Wolter, C.; Wegener, N.; Arlinghaus, R.

10.1101/419994 — ecology — Posted on 2018-09-18

1163 WFD ecological status indicator shows poor correlation with flow parameters in a large Alpine catchment

Larsen, S.; Bruno, M. C.; Zolezzi, G.

10.1101/419804 — ecology — Posted on 2018-09-18

1164 High dispersal levels and lake warming are emergent drivers of cyanobacterial community assembly over the Anthropocene

Monchamp, M.-E.; Spaak, P.; Pomati, F.

10.1101/419762 — ecology — Posted on 2018-09-18

1165 Over-expression of Hsp83 in grossly depleted hsrω lncRNA background causes synthetic lethality and l(2)gl phenocopy in Drosophila

Ray, M.; Acharya, S.; Shambhavi, S.; Lakhotia, S. C.

10.1101/420554 — developmental biology — Posted on 2018-09-18

1166 Olfaction regulates organismal proteostasis and longevity via microRNA-dependent signaling

Finger, F.; Ottens, F.; Springhorn, A.; Drexel, T.; Proksch, L.; Metz, S.; Cochella, L.; Hoppe, T.

10.1101/420687 — cell biology — Posted on 2018-09-18

1167 Dihydropyrimidinase protects from DNA replication stress caused by cytotoxic metabolites.

Basbous, J.; Aze, A.; Chaloin, L.; Lebdy, R.; Hodroj, D.; Ribeyre, C.; Larroque, M.; Shepard, C.; Kim, B.; Pruvost, A.; Moreaux, J.; Maiorano, D.; Mechali, M.; Constantinou, A.

10.1101/420893 — cancer biology — Posted on 2018-09-18

1168 Prostaglandin F2α-induced TGFβ-PMEPA1 pathway is a critical mediator of epithelial plasticity and ovarian carcinoma progression.

Jimenez-Segovia, A.; Mota, A.; Rojo-Sebastian, A.; Barrocal, B.; Rynne-Vidal, A.; Garcia-Bermejo, M. L.; Gomez-Bris, R.; Hawinkels, L. J. A. C.; Sandoval, P.; Garcia-Escudero, R.; Lopez-Cabrera, M.; Moreno-Bueno, G.; Fresno, M.; Stamatakis, K.

10.1101/418582 — cancer biology — Posted on 2018-09-18

1169 Polyacrylamide Bead Sensors for in vivo Quantification of Cell-Scale Stress in Zebrafish Development

Traeber, N.; Uhlmann, K.; Girardo, S.; Kesavan, G.; Wagner, K.; Friedrichs, J.; Goswami, R.; Bai, K.; Brand, M.; Werner, C.; Balzani, D.; Guck, J.

10.1101/420844 — biophysics — Posted on 2018-09-18

1170 Tissue-expression profiles unveils the gene interaction of hepatopancreas, eyestalk, and ovary in precocious female Chinese mitten crab, Eriocheir sinensis

Wang, J.; Chen, X.; Hou, X.; Yue, W.; Huang, S.; Wang, C.

10.1101/420182 — bioinformatics — Posted on 2018-09-18

1171 rnaSPAdes: a de novo transcriptome assembler and its application to RNA-Seq data

Bushmanova, E.; Antipov, D.; Lapidus, A.; Przhibelskiy, A. D.

10.1101/420208 — bioinformatics — Posted on 2018-09-18

1172 Arabidopsis class I formin FH1 relocates between membrane compartments during root cell ontogeny and associates with plasmodesmata

Oulehlova, D.; Kollarova, E.; Cifrova, P.; Pejchar, P.; Zarsky, V.; Cvrckova, F.

10.1101/419853 — plant biology — Posted on 2018-09-18

1173 Honey bee workers reared in a neonicotinoid contaminated in-hive environment

Odemer, R.; Odemer, F.

10.1101/420919 — pharmacology and toxicology — Posted on 2018-09-18

1174 Identification of Kinase Inhibitors that Regulate Nuclear Receptor Nurr1 (NR4A2) Cellular Activity

Williams, K. L.; Wells, C. I.; Moore, J. T.

10.1101/420976 — pharmacology and toxicology — Posted on 2018-09-18

1175 Surface sediment samples from early age of seafloor exploration can provide a late 19th century baseline of the marine environment

Rillo, M. C.; Kucera, M.; Ezard, T. H. G.; Miller, G.

10.1101/419770 — paleontology — Posted on 2018-09-18

1176 Sfp1 regulates transcriptional networks driving cell growth and division through multiple promoter binding modes

Shore, D.; Albert, B.; Tomassetti, S.; Gloor, Y.; Dilg, D.; Mattarocci, S.; Kubik, S.

10.1101/420794 — molecular biology — Posted on 2018-09-18

1177 Structural variants exhibit allelic heterogeneity and shape variation in complex traits

Chakraborty, M.; Emerson, J. J.; Macdonald, S. J.; Long, A. D.

10.1101/419275 — genomics — Posted on 2018-09-18

1178 Disease heritability enrichment of regulatory elements is concentrated in elements with ancient sequence age and conserved function across species

Hujoel, M. L. A.; Gazal, S.; Hormozdiari, F.; van de Geijn, B.; Price, A. L.

10.1101/420166 — genetics — Posted on 2018-09-18

1179 Localization of balanced chromosome translocation breakpoints by long-read sequencing on the Oxford Nanopore platform

Hu, L.; Liang, F.; Cheng, D.; Zhang, Z.; Yu, G.; Zha, J.; Wang, Y.; Wang, F.; Tan, Y.; Wang, D.; Wang, K.; Lin, G.

10.1101/419531 — genetics — Posted on 2018-09-18

1180 Does Neuroticism Cause Depression? A Mendelian Randomization Study

Speed, D.; Hemani, G.; Speed, M. S.; Major Depressive Disorder Working Group of the Psychiatric Genomics Consortium, ; Boerglum, A. D.; Oestergaard, S. D.

10.1101/420703 — genetics — Posted on 2018-09-18

1181 Interspecific plant competition mediates impact of climate change on the ecophysiology of a plant-herbivore interaction.

Van De Velde, H.; AbdElgawad, H.; Asard, H.; Beemster, G.; Selim, S.; Nijs, L.; Bonte, D.

10.1101/420901 — ecology — Posted on 2018-09-18

1182 Wdr5, Brca1 and Bard1 link the DNA damage response to the mesenchymal-to-epithelial transition during early reprogramming.

Penalosa-Ruiz, G.; Vicky Bousgouni, V.; Gerlach, J. P.; Waarlo, S.; van de Ven, J. V.; Veenstra, T. E.; Silva, J. C. R.; van Heeringen, S. J.; Bakal, C.; Mulder, K. W.; Veenstra, G. J. C.

10.1101/421016 — developmental biology — Posted on 2018-09-18

1183 Bleaching-independent, whole-cell, 3D and multi-color STED imaging with exchangeable fluorophores

Spahn, C.; Grimm, J. B.; Lavis, L. D.; Lampe, M.; Heilemann, M.

10.1101/420638 — biophysics — Posted on 2018-09-18

1184 SpeciesMLP: Sequence based Multi-layer Perceptron for Amplicon Read Classification Using Real-time Data Augmentation

Kishk, A.; El-Hadidi, M.

10.1101/419846 — bioinformatics — Posted on 2018-09-18

1185 A new statistic for efficient detection of repetitive sequences

Chen, S.; Sun, F.; Waterman, M. S.; Zhang, X.

10.1101/420745 — bioinformatics — Posted on 2018-09-18

1186 Cryo-EM structures reveal bilayer remodeling during Ca2+ activation of a TMEM16 scramblase

Falzone, M. E.; Rheinberger, J.; Lee, B.-C.; Peyear, T.; Sasset, L.; Raczkowski, A.; Eng, E.; Di Lorenzo, A.; Andersen, O. S.; Nimigean, C. M.; Accardi, A.

10.1101/420174 — biochemistry — Posted on 2018-09-18

1187 Computationally designing antimicrobial peptides for Acinectobacter Baumannii

Majumder, A.; Biswal, M. R.; Prakash, M. K.

10.1101/419820 — biochemistry — Posted on 2018-09-18

1188 Open prediction of polysaccharide utilisation loci (PUL) in 5414 public Bacteroidetes genomes using PULpy

Stewart, R. D.; Auffret, M.; Roehe, R.; Watson, M.

10.1101/421024 — microbiology — Posted on 2018-09-18

1189 snakePipes enable flexible, scalable and integrative epigenomic analysis

Bhardwaj, V.; Heyne, S.; Sikora, K.; Rabbani, L.; Rauer, M.; Kilpert, F.; Richter, A. S.; Ryan, D. P.; Manke, T.

10.1101/407312 — genomics — Posted on 2018-09-18

1190 High-dimensional single cell-analysis of lymphocytic activation in melanoma

Bosisio, F. M.; Antoranz, A.; Bolognesi, M. M.; Chinello, C.; Wouters, J.; Magni, F.; Alexopoulos, L.; Cattoretti, G.; van den Oord, J.

10.1101/409011 — cancer biology — Posted on 2018-09-18

1191 Advances in Gene Ontology Utilization Improve Statistical Power of Annotation Enrichment

Hinderer, E. W.; Flight, R. M.; Dubey, R.; MacLeod, J. N.; Moseley, H. N. B.

10.1101/419085 — systems biology — Posted on 2018-09-18

1192 ASD Diagnosis in Adults: Phenotype and Genotype Findings from a Clinically-derived Cohort

Underwood, J. F. G.; Kendall, K. M.; Berrett, J.; Anney, R.; Van Den Bree, M.; Hall, J.

10.1101/420778 — neuroscience — Posted on 2018-09-18

1193 miRBaseConverter: An R/Bioconductor Package for Converting and Retrieving miRNA Name, Accession, Sequence and Family Information in Different Versions of miRBase

Xu, T.; Su, N.; Liu, L.; Zhang, J.; Wang, H.; Zhang, W.; Gui, J.; Yu, K.; Li, J.; Le, T. D.

10.1101/407148 — genomics — Posted on 2018-09-18

1194 IMPROVING THE PERFORMANCE OF THE RNA AMBER FORCE FIELD BY TUNING THE HYDROGEN-BONDING INTERACTIONS

Kuhrova, P.; Mlynsky, V.; Zgarbova, M.; Krepl, M.; Bussi, G.; Best, R. B.; Otyepka, M.; Sponer, J.; Banas, P.

10.1101/410993 — biochemistry — Posted on 2018-09-18

1195 Signaling incentive and drive in the primate ventral pallidum for motivational control of goal-directed action

Fujimoto, A.; Hori, Y.; Nagai, Y.; Kikuchi, E.; Oyama, K.; Suhara, T.; Minamimoto, T.

10.1101/420851 — neuroscience — Posted on 2018-09-18

1196 A multi-scale model reveals cellular and physiological mechanisms underlying hyperpolarisation-gated synaptic plasticity

Xie, Y.; Kazmierczyk, M.; Graham, B. P.; Dutia, M. B.; Stefan, M. I.

10.1101/418228 — neuroscience — Posted on 2018-09-18

1197 Assessment of a highly multiplexed RNA sequencing platform and comparison to existing high-throughput gene expression profiling techniques

Reed, E.; Moses, E.; Xiao, X. R.; Liu, G.; Campbell, J.; Perdomo, C.; Monti, S.

10.1101/419838 — bioinformatics — Posted on 2018-09-18

1198 Pervasive selection against microRNA target sites in human populations

Hatlen, A.; Marco, A.

10.1101/420646 — evolutionary biology — Posted on 2018-09-18

1199 MMseqs2 desktop and local web server app for fast, interactive sequence searches

Mirdita, M.; Steinegger, M.; Soding, J.

10.1101/419895 — bioinformatics — Posted on 2018-09-18

1200 Ozone Treatment for Elimination of Bacteria in Medical Environments

Westover, C.; Rahmatulloev, S.; Danko, D.; O'Hara, N. B.; Ounit, R.; Bezdan, D.; Afshinnekoo, E.; Mason, C. E.

10.1101/420737 — microbiology — Posted on 2018-09-18

1201 Pitch perception is adapted to species-specific cochlear filtering

Walker, K. M. M.; Gonzalez, R.; Kang, J. Z.; McDermott, J. H.; King, A. J.

10.1101/420786 — neuroscience — Posted on 2018-09-18

1202 Speech-based identification of L-DOPA ON/OFF state in Parkinson’s Disease subjects

Norel, R.; Agurto, C.; Rice, J. J.; Ho, B. K.; Cecchi, G. A.

10.1101/420422 — neuroscience — Posted on 2018-09-18

1203 Loss of zebrafish ctnnd2b results in disorganised forebrain neuron clusters

Hofmeister, W.; Vaz, R.; Edwards, S.; Rey, A. D.; Lindstrand, A.

10.1101/420828 — developmental biology — Posted on 2018-09-18

1204 Biolistic transformation of Haematococcus pluvialis with constructs based on the flanking sequences of its endogenous alpha tubulin gene

Yuan, G.; zhang, W.; zhang, w.; xu, x.; cui, Y.; liu, t.

10.1101/420711 — molecular biology — Posted on 2018-09-18

1205 Network analysis of lymphocyte nucleus staining image

Li, D.-D.; Yang, X.-L.; Xiong, Q.-Y.; Liang, Y.-D.; Liu, S.-Q.; Hu, H.-Y.; Zhou, X.-h.; Huang, H.

10.1101/396143 — bioinformatics — Posted on 2018-09-17

1206 GOcats: A tool for categorizing Gene Ontology into subgraphs of user-defined concepts

Hinderer, E. W.; Moseley, H. N. B.

10.1101/306936 — systems biology — Posted on 2018-09-17

1207 The Drosophila chromodomain protein Kismet activates steroid hormone receptor transcription to govern axon pruning and memory in vivo

Latcheva, N. K.; Viveiros, J. M.; Marenda, D. R.

10.1101/376335 — neuroscience — Posted on 2018-09-17

1208 Twenty-Five Cohorts of Major Depressive Disorder in China: Evidence for Reduced Default Mode Network Functional Connectivity in Recurrent Depressive Patients

Yan, C.-G.; Chen, X.; Li, L.; Castellanos, F. X.; Bai, T.-J.; Bo, Q.-J.; Chen, G.-M.; Chen, N.-X.; Chen, W.; Cheng, C.; Cheng, Y.-Q.; Cui, X.-L.; Duan, J.; Fang, Y.-R.; Gong, Q.-Y.; Guo, W.-B.; Hou, Z.-H.; Hu, L.; Kuang, L.; Li, F.; Li, K.-M.; Li, T.; Liu, Y.-S.; Liu, Z.-N.; Long, Y.-C.; Luo, Q.-H.; Meng, H.-Q.; Peng, D.-H.; Qiu, H.-T.; Qiu, J.; Shen, Y.-D.; Shi, Y.-S.; Si, T.-M.; Wang, C.-Y.; Wang, F.; Wang, K.; Wang, L.; Wang, X.; Wang, Y.; Wu, X.-P.; Wu, X.-R.; Xie, G.-R.; Xie, H.-Y.; Xie, P.; Xu, X.-F.; Yang, H.; Yang, J.; Yao, J.-S.; Yao, S.-Q.; Yin, Y.-Y.; Yuan, Y.-G.; Zhang, A.-X.; Zhan

10.1101/321745 — neuroscience — Posted on 2018-09-17

1209 Insulin-Producing Cells Monitor the Temperature and Compensate for Cold-Induced Sleep in Drosophila

Zhang, X.; Cui, X.; Zhu, D.

10.1101/419200 — neuroscience — Posted on 2018-09-17

1210 GOcats: A tool for categorizing Gene Ontology into subgraphs of user-defined concepts

Hinderer, E. W.; Moseley, H. N. B.

10.1101/306936 — systems biology — Posted on 2018-09-17

1211 Non-driver somatic alteration burden confers good prognosis in non-small cell lung cancer

Wang, D.; Pham, N.-A.; Freeman, T. M.; Raghavan, V.; Navab, R.; Pasko, E.; Chang, J.; Zhu, C.-Q.; Ly, D.; Tong, J.; Wouters, B. G.; Pintilie, M.; Moran, M. F.; Shepherd, F. A.; Tsao, M.-S.

10.1101/419424 — cancer biology — Posted on 2018-09-17

1212 PERK Signaling Regulates Extracellular Proteostasis of an Amyloidogenic Protein During Endoplasmic Reticulum Stress

Wiseman, R. L.; Romine, I. C.

10.1101/419564 — biochemistry — Posted on 2018-09-17

1213 Optimization of Dose Schedules for Chemotherapy of Early Colon Cancer Determined by High Performance Computer Simulations

Cockrell, C.; Axelrod, D.

10.1101/420232 — cancer biology — Posted on 2018-09-17

1214 A second generation IL-2 receptor-targeted diphtheria fusion toxin exhibits anti-tumor activity and synergy with anti-PD-1 in melanoma

Cheung, L. S.; Fu, J.; Kumar, P.; Kumar, A.; Urbanowski, M. E.; Ihms, E. A.; Parveen, S.; Bullen, C. K.; Patrick, G.; Harrison, R.; Murphy, J. R.; Pardoll, D. M.; Bishai, W.

10.1101/420158 — cancer biology — Posted on 2018-09-17

1215 Effects of rising amyloidβ on hippocampal synaptic transmission, microglial response and cognition in APPSwe/PSEN1M146V transgenic mice

10.1101/420349 — neuroscience — Posted on 2018-09-17

1216 Separate lanes for math and reading in the white matter highways of the human brain

Grotheer, M.; Zhen, Z.; Grill-Spector, K.

10.1101/420216 — neuroscience — Posted on 2018-09-17

1217 A TauP301L mouse model of dementia; development of pathology, synaptic transmission, microglial response and cognition throughout life

Joel, Z.; Izquierdo, P.; Liu, W.; Hall, C.; Roberts, M.; Yap, K.; Nick, A.; Spowart, E.; Desai, R.; Muessig, L.; Steinberg, R.; Martin, S.; Smith, K. J.; Richardson, J. C.; Cacucci, F.; Salih, D. A.; Cummings, D. M.; Edwards, F. A.

10.1101/420398 — neuroscience — Posted on 2018-09-17

1218 The speed-accuracy tradeoff reveals flexible access to accumulating sensory evidence during human decision making

Nelli, S.; Itthipuripat, S.; Rungratsameetaweemana, N.; Serences, J.

10.1101/420430 — neuroscience — Posted on 2018-09-17

1219 The pathological hallmarks of Alzheimer’s disease derive from compensatory responses to NMDA receptor insufficiency

Sohre, S.; Moosmann, B.

10.1101/418566 — neuroscience — Posted on 2018-09-17

1220 Using Single Nucleotide Variations in Single-Cell RNA-Seq to Identify Subpopulations and Genotype-phenotype Linkage

Poirion, O. B.; Zhu, X.; Ching, T.; Garmire, L. X.

10.1101/095810 — bioinformatics — Posted on 2018-09-17

1221 Transient spectral events in resting state MEG predict individual time-frequency task responses

Becker, R.; Vidaurre, D.; Quinn, A. J.; Abeysuriya, R.; Parker Jones, O.; Jbabdi, S.; Woolrich, M.

10.1101/419374 — neuroscience — Posted on 2018-09-17

1222 Early postnatal development of the cellular and circuit properties of striatal D1 and D2 spiny projection neurons

Krajeski, R. N.; Macey-Dare, A.; van Heusden, F.; Ebrahimjee, F.; Ellender, T. J.

10.1101/413740 — neuroscience — Posted on 2018-09-17

1223 Saccades and Handedness Interact to Affect Scene Memory

Ellmore, T. M.; Mackin, B.; Ng, K.

10.1101/351486 — neuroscience — Posted on 2018-09-17

1224 DOT1L suppresses nuclear RNAi originating from enhancer elements in Caenorhabditis elegans

Esse, R.; Gushchanskaia, E.; Lord, A.; Grishok, A.

10.1101/320465 — genomics — Posted on 2018-09-17

1225 Rewiring of RSK-PDZ interactions by linear motif phosphorylation

Gogl, G.; Biri-Kovacs, B.; Durbesson, F.; Jane, P.; Nomine, Y.; Kostmann, C.; Bilics, V.; Simon, M.; Remenyi, A.; Vincentelli, R.; Trave, G.; Nyitray, L.

10.1101/419721 — systems biology — Posted on 2018-09-17

1226 Deacetylation of catalytic lysine in CDK1 is essential for Cyclin-B binding and cell cycle

10.1101/420000 — cell biology — Posted on 2018-09-17

1227 Collective search with finite perception: transient dynamics and search efficiency

Gosztolai, A.; Carrillo, J. A.; Barahona, M.

10.1101/419689 — biophysics — Posted on 2018-09-17

1228 Chromatin compaction states, nuclear shape fluctuations and auxeticity: A biophysical interpretation of the epigenetic landscape of stem cells

Tripathi, K.; Menon, G. I.

10.1101/419556 — biophysics — Posted on 2018-09-17

1229 Co-translation drives the assembly of mammalian nuclear multisubunit complexes

Kamenova, I.; Mukherjee, P.; Conic, S.; Mueller, F.; El-Saafin, F.; Bardot, P.; Garnier, J.-M.; Dembele, D.; Capponi, S.; Timmers, M. H.; Vincent, S. D.; Tora, L.

10.1101/419812 — molecular biology — Posted on 2018-09-17

1230 Mitotic Regulators and the SHP2-MAPK Pathway Promote Insulin Receptor Endocytosis and Feedback Regulation of Insulin Signaling

Choi, E.; Kikuchi, S.; Gao, H.; Brodzik, K.; Nassour, I.; Yopp, A.; Singal, A. G.; Zhu, H.; Yu, H.

10.1101/419911 — cell biology — Posted on 2018-09-17

1231 Apical caspase reporters uncover unknown stages of apoptosis and enable ready visualization of undead cells

Baena-Lopez, L. A.; Arthurton, L.; Bischoff, M.; Vincent, J.-P.; Alexandre, C.; McGregor, R.

10.1101/419630 — cell biology — Posted on 2018-09-17

1232 The Inter and Intra-Tumoural Heterogeneity of Subclonal Reconstruction

Bhandari, V.; Liu, L. Y.; Salcedo, A.; Espiritu, S. M.; Morris, Q. D.; Boutros, P. C.

10.1101/418780 — cancer biology — Posted on 2018-09-17

1233 Accordion-like collagen fibrils suggested by P-SHG image modeling: implication in liver fibrosis

Rouede, D.; Schaub, E.; Bellanger, J.-J.; Ezan, F.; Tiaho, F.

10.1101/420265 — biophysics — Posted on 2018-09-17

1234 Phasor histone FLIM-FRET microscopy quantifies spatiotemporal rearrangement of chromatin architecture during the DNA damage response.

Lou, J.; Scipioni, L.; Wright, B. K.; Bartolec, T. K.; Zhang, J.; Masamsetti, V. P.; Gaus, K.; Gratton, E.; Cesare, A. J.; Hinde, E.

10.1101/419523 — biophysics — Posted on 2018-09-17

1235 High sensitivity mapping of cortical dopamine D2 receptor expressing neurons

Khlghatyan, J.; Quintana, C.; Parent, M.; Beaulieu, J.-M.

10.1101/349100 — neuroscience — Posted on 2018-09-17

1236 The origins and relatedness structure of mixed infections vary with local prevalence of P. falciparum malaria

Zhu, S. J.; Hendry, J. A.; Almagro-Garcia, J.; Pearson, R. D.; Amato, R.; Miles, A.; Weiss, D. J.; Lucas, T. C. D.; Nguyen, M.; Gething, P. W.; Kwiatkowski, D.; McVean, G.; Pf3k Project,

10.1101/387266 — epidemiology — Posted on 2018-09-17

1237 Machine learning and mHealth techniques to improve prognostication and clinical management of patients with Ebola virus disease

Colubri, A.; Hartley, M.-A.; Siakor, M.; Wolfman, V.; Sesay, T.; Felix, A.; Levine, A. C.; Sabeti, P. C.

10.1101/294587 — bioinformatics — Posted on 2018-09-17

1238 Bayesian Inference of Other Minds Explains Human Decisions in a Group Decision Making Task

Khalvati, K.; Park, S. A.; Philippe, R.; Sestito, M.; Dreher, J.-C.; Rao, R. P. N.

10.1101/419515 — neuroscience — Posted on 2018-09-17

1239 The interplay between small RNA pathways shapes chromatin landscape in C. elegans

Gushchanskaia, E.; Esse, R.; Ma, Q.; Lau, N.; Grishok, A.

10.1101/320713 — molecular biology — Posted on 2018-09-17

1240 Generalisation behaviour of predators toward warning signals displayed by harmful prey: answers from a videogame played by humans.

Arias, M.; Griffiths, D.; Joron, M.; Davey, J.; Martin, S. H.; Jiggins, C. D.; Nadeau, N.; Llaurens, V.

10.1101/409557 — evolutionary biology — Posted on 2018-09-17

1241 Functional lability of RNA-dependent RNA polymerases in animals

Pinzon, N.; Bertrand, S.; Subirana, L.; Busseau, I.; Escriva, H.; Seitz, H.

10.1101/339820 — evolutionary biology — Posted on 2018-09-17

1242 Metabolic modeling of Streptococcus mutans reveals complex nutrient requirements of an oral pathogen

Jijakli, K.; Jensen, P. A.

10.1101/419507 — systems biology — Posted on 2018-09-17

1243 Thermal selection drives biodiversity origination across the Atlantic/Indian Ocean boundary

Teske, P.; Sandoval-Castillo, J.; Rao Golla, T.; Emami-Khoyi, A.; Tine, M.; von der Heyden, S.; Beheregaray, L. B.

10.1101/419036 — evolutionary biology — Posted on 2018-09-17

1244 Palaeobiological inferences based on long bone epiphyseal and diaphyseal structure - the forelimb of xenarthrans (Mammalia)

Amson, E.; Nyakatura, J. A.

10.1101/318121 — paleontology — Posted on 2018-09-17

1245 Laboratory evolution reveals a two-dimensional rate-yield tradeoff in microbial metabolism

Cheng, C.; O'Brien, E. J.; McCloskey, D.; Utrilla, J.; Olson, C.; LaCroix, R. A.; Sandberg, T. E.; Feist, A. M.; Palsson, B. O.; King, Z. A.

10.1101/414912 — microbiology — Posted on 2018-09-17

1246 Quantitative study of the somitogenetic wavefront in zebrafish

Zhang, W.; Ducos, B.; Delagrange, M.; Vriz, S.; Bensimon, D.

10.1101/419705 — developmental biology — Posted on 2018-09-17

1247 Deciphering defective subventricular adult neurogenesis in cyclin D2-deficient mice

Płatek, R.; Kaczmarek, L.; Czupryn, A.

10.1101/419382 — neuroscience — Posted on 2018-09-17

1248 Oxytocin amplifies sex differences in human mate choice

Xu, L.; Becker, B.; Luo, R.; Zheng, X.; Zhao, W.; Zhang, Q.; Kendrick, K.

10.1101/416198 — neuroscience — Posted on 2018-09-17

1249 Physical illness, social disadvantage, and risky sexual behavior in adolescence and young adulthood

Alley, J.; Owen, R. Y.; Wawrzynski, S. E.; Lasrich, L.; Ahmmad, Z.; Utz, R.; Adkins, D. E.

10.1101/419010 — epidemiology — Posted on 2018-09-17

1250 The Dlg-module and clathrin-mediated endocytosis regulate EGFR signaling and cyst cell-germline coordination in the Drosophila testis

Papagiannouli, F.; Berry, C. W.; Fuller, M. T.

10.1101/419937 — developmental biology — Posted on 2018-09-17

1251 Mutual transcriptional repression between Gli3 and Hox13 genes determines the anterior-posterior asymmetry of the autopod

Bastida, M. F.; Perez-Gomez, R.; Trofka, A.; Sheth, R.; Stadler, H. S.; Mackem, S.; Ros, M. A.

10.1101/419606 — developmental biology — Posted on 2018-09-17

1252 The Resistome: updating a standardized resource for analyzing resistance phenotypes

Winkler, J.

10.1101/418814 — bioinformatics — Posted on 2018-09-17

1253 Cell-type switches induced by stochastic histone modification inheritance

Huang, R.; Lei, J.

10.1101/419481 — systems biology — Posted on 2018-09-17

1254 Efficient transposon mutagenesis mediated by an IPTG-controlled conditional suicide plasmid

Guo, H.; Naorem, S. S.; Han, J.; Zhang, S. Y.; Zhang, J.; Graham, L. B.; Song, A.; Smith, C. V.; Rashid, F.

10.1101/419473 — microbiology — Posted on 2018-09-17

1255 Deciphering the enigmatic role of the amidotransferase LipL in Bacillus subtilis lipoic acid utilization

Rasetto, N. B.; Lavatelli, A.; Martin, N.; Mansilla, M. C.

10.1101/419234 — microbiology — Posted on 2018-09-17

1256 Genomic prediction of cognitive traits in childhood and adolescence

Allegrini, A.; Selzam, S.; Rimfeld, K.; von Stumm, S.; Pingault, J.-B.; Plomin, R.

10.1101/418210 — genomics — Posted on 2018-09-17

1257 Germline-Restricted Chromosome (GRC) is Widespread among Songbirds

Torgasheva, A. A.; Malinovskaya, L. P.; Zadesenets, K. S.; Karamysheva, T. V.; Kizilova, E. A.; Pristyazhnyuk, I. E.; Shnaider, E. P.; Volodkina, V. A.; Saifutdinova, A. F.; Galkina, S. A.; Larkin, D. M.; Rubtsov, N. B.; Borodin, P. M.

10.1101/414276 — evolutionary biology — Posted on 2018-09-17

1258 Neural System and Receptor Diversity in the ctenophore Beroe abyssicola

Moroz, L. L.; Norekian, T. P.

10.1101/419218 — evolutionary biology — Posted on 2018-09-17

1259 Two dispersers are better than one: a ‘bird-fig’ attracts bats via nocturnal scent

Ripperger, S. P.; Rehse, S.; Wacker, S.; Kalko, E.; Schulz, S.; Rodriguez-Herrera, B.; Ayasse, M.

10.1101/418970 — ecology — Posted on 2018-09-17

1260 Phylotastic: improving access to tree-of-life knowledge with flexible, on-the-fly delivery of trees

Nguyen, V. D.; Nguyen, T. H.; Md. Tayeen, A. S.; Laughinghouse, H. D.; Sanchez-Reyes, L. L.; Pontelli, E.; Mozzherin, D.; O'Meara, B.; Stoltzfus, A.

10.1101/419143 — bioinformatics — Posted on 2018-09-17

1261 How do owners perceive dominance in dogs?

Kubinyi, E.; Wallis, L.

10.1101/419044 — animal behavior and cognition — Posted on 2018-09-17

1262 Haemophilus, antibiotic therapy and the airway microbiome in chronic obstructive pulmonary disease

Brill, S. E.; James, P. L.; Cuthbertson, L.; Zhu, A.; Lawley, T.; Cookson, W. O.; Cox, M. J.; Wedzicha, J. A.; Moffatt, M. F.

10.1101/419127 — microbiology — Posted on 2018-09-17

1263 The NSL complex mediated nucleosome landscape is required to maintain transcription fidelity and suppression of transcription noise

Lam, K. C.; Chung, H.-R.; Semplicio, G.; Bhardwaj, V.; Iyer, S. S.; Holz, H.; Georgiev, P.; Akhtar, A.

10.1101/419408 — genomics — Posted on 2018-09-17

1264 An ABC method for whole-genome sequence data: inferring paleolithic and neolithic human expansions

Jay, F.; Boitard, S.; Austerlitz, F.

10.1101/419002 — evolutionary biology — Posted on 2018-09-17

1265 Inactivation of the monofunctional peptidoglycan glycosyltransferase SgtB allows Staphylococcus aureus to survive in the absence of lipoteichoic acid

Karinou, E.; Schuster, C. F.; Pazos, M.; Vollmer, W.; Grundling, A.

10.1101/311282 — microbiology — Posted on 2018-09-17

1266 Seasonal synchronization of sleep timing in industrial and pre-industrial societies

Martin-Olalla, J. M.

10.1101/392035 — physiology — Posted on 2018-09-17

1267 The evolutionary potential of diet-dependent effects on lifespan and fecundity in a multi-parental population of Drosophila melanogaster

Ng'oma, E.; Fidelis, W.; Middleton, K.; King, E. G.

10.1101/343947 — evolutionary biology — Posted on 2018-09-17

1268 Bacteriology And Antibiotic Prescription Patterns In A Malawian Tertiary Hospital Burns Unit

Kasenda, S.; Mategula, D.; Manda, G. E.; Chokotho, T. K.

10.1101/419713 — epidemiology — Posted on 2018-09-17

1269 Bcl-xL inhibition enhances Dinaciclib-induced cell death in soft-tissue sarcomas.

Rello-Varona, S.; Fuentes-Guirado, M.; Lopez-Alemany, R.; Contreras-Perez, A.; Mulet-Margalef, N.; Garcia-Monclus, S.; Tirado, O. M.; Garcia del Muro, X.

10.1101/400986 — cancer biology — Posted on 2018-09-17

1270 Effects of chronic spinal cord injury on relationships among ion channel and receptor mRNAs in mouse lumbar spinal cord

Garcia, V. B.; Abbinanti, M. D.; Harris-Warrick, R. M.; Schulz, D. J.

10.1101/357665 — neuroscience — Posted on 2018-09-17

1271 The origins and relatedness structure of mixed infections vary with local prevalence of P. falciparum malaria

Zhu, S. J.; Hendry, J. A.; Almagro-Garcia, J.; Pearson, R. D.; Amato, R.; Miles, A.; Weiss, D. J.; Lucas, T. C. D.; Nguyen, M.; Gething, P. W.; Kwiatkowski, D.; McVean, G.; Pf3k Project,

10.1101/387266 — epidemiology — Posted on 2018-09-17

1272 SqueezeM, a highly portable, fully automatic metagenomic analysis pipeline

Tamames, J.; Puente-Sanchez, F.

10.1101/347559 — bioinformatics — Posted on 2018-09-17

1273 The trichotomy of pneumococcal infection outcomes

Almocera, A. E. S.; Hernandez-Mejia, G.; Parra-Rojas, C.; Hernandez-Vargas, E. A.

10.1101/370007 — microbiology — Posted on 2018-09-17

1274 Improved real-time influenza surveillance using Internet search data in eight Latin American countries

Clemente Lopez, C. L.; Lu, F.; Santillana, M.

10.1101/418475 — epidemiology — Posted on 2018-09-17

1275 Physical illness, social disadvantage, and risky sexual behavior in adolescence and young adulthood

Alley, J.; Owen, R. Y.; Wawrzynski, S. E.; Lasrich, L.; Ahmmad, Z.; Utz, R.; Adkins, D. E.

10.1101/419010 — epidemiology — Posted on 2018-09-17

1276 Unjamming overcomes kinetic and proliferation arrest in terminally differentiated cells and promotes collective motility of carcinoma.

Palamidessi, A.; Malinverno, C.; FRITTOLI, E.; Corallino, S.; Barbieri, E.; Sigismund, S.; Di Fiore, P. P.; Beznoussenko, G. V.; Martini, E.; Garre, M.; Parazzoli, D.; Ferrara, I.; Tripodo, C.; Giavazzi, F.; Cerbino, R.; Scita, G.

10.1101/388553 — cancer biology — Posted on 2018-09-17

1277 Forgetful inference in a sophisticated world model

Ahilan, S.; Solomon, R. B.; Breton, Y.-A.; Conover, K.; Niyogi, R. K.; Shizgal, P.; Dayan, P.

10.1101/419317 — neuroscience — Posted on 2018-09-17

1278 rPinecone: Define sub-lineages of a clonal expansion via a phylogenetic tree

Wailan, A. M.; Coll, F.; Heinz, E.; Tonkin-Hill, G.; Corrander, J.; Feasey, N. A.; Thomson, N. R.

10.1101/404624 — genomics — Posted on 2018-09-17

1279 Fusing Mobile Phone Sensing and Brain Imaging to Assess Depression in College Students

Huckins, J. F.; daSilva, A. W.; Wang, R.; Wang, W.; Hedlund, E. L.; Murphy, E. I.; Lopez, R. B.; Rogers, C.; Holtzheimer, P. E.; Kelley, W. M.; Heatherton, T. F.; Wagner, D. D.; Haxby, J. V.; Campbell, A. T.

10.1101/276568 — neuroscience — Posted on 2018-09-17

1280 Parcellation of motor sequence representations in the human neocortex

Yokoi, A.; Diedrichsen, J.

10.1101/419754 — neuroscience — Posted on 2018-09-17

1281 Age-differences in functional asymmetry during memory retrieval revisited: no evidence for contralateral over-activation or compensation

Roe, J. M.; Vidal-Pineiro, D.; Sneve, M. H.; Kompus, K.; Greve, D.; Walhovd, K. B.; Fjell, A. M.; Westerhausen, R.

10.1101/419739 — neuroscience — Posted on 2018-09-17

1282 Spatial patterns of species richness and nestedness in ant assemblages along an elevational gradient in a Mediterranean mountain range

Flores, O.; Seoane, J.; Hevia, V.; Azcarate, F. M.

10.1101/420059 — ecology — Posted on 2018-09-17

1283 Distribution of duck-origin parvovirus in Cherry Valley ducks in vivo over time and histopathological investigation

Chen, B.; Luo, Q.; Xu, J.; Huang, C.; Liu, W.; Cheng, A.-c.; Chen, Z.

10.1101/420067 — zoology — Posted on 2018-09-17

1284 Unveiling Leishmania invasion of fibroblasts: calcium signaling, lysosome recruitment and exocytosis culminate with actin-independent invasion.

Cavalcante-Costa, V. S.; Costa-Reginaldo, M.; Queiroz-Oliveira, T.; Oliveira, A.; Couto, N.; Anjos, D.; Santos, J.; Andrade, L.; Horta, M. F.; Castro-Gomes, T.

10.1101/420091 — cell biology — Posted on 2018-09-17

1285 Knockdown of the translocon protein EXP2, reduces growth and protein export in malaria parasites.

Gilson, P. R.; Charnaud, S. C.; Kumarasingha, R.; Bullen, H. E.; Crabb, B. S.

10.1101/420034 — microbiology — Posted on 2018-09-17

1286 B1a cells protect against Schistosoma japonicum-induced liver inflammation and fibrosis by controlling monocyte infiltration

Hou, X.; Yong, L.; Tang, Y.; Ren, C.; Liu, M.; Shen, J.

10.1101/420083 — immunology — Posted on 2018-09-17

1287 Individual response to mTOR inhibition in delaying replicative senescence of mesenchymal stromal cells

Antonioli, E.; Torres, N.; Ferretti, M.; Piccinato, C. d. A.; Sertie, A. L.

10.1101/420026 — cell biology — Posted on 2018-09-17

1288 Predation at a snails pace. What is needed for a successful hunt?

Gruijters, W. T. M.

10.1101/420042 — animal behavior and cognition — Posted on 2018-09-17

1289 A human embryonic stem cell model of Aβ-dependent chronic progressive neurodegeneration

Ubina, T.; Magallanes, M.; Srivastava, S.; Warden, C.; Yee, J.-K.; Salvaterra, P. M.

10.1101/419978 — neuroscience — Posted on 2018-09-17

1290 Who gets lost and why: A representative cross-sectional survey on sociodemographic and vestibular determinants of wayfinding strategies

Ulrich, S.; Grill, E.; Flanagin, V. L.

10.1101/419986 — neuroscience — Posted on 2018-09-17

1291 Analysis of the gut and gill microbiome of resistant and susceptible lines of rainbow trout (Oncorhynchus mykiss)

Salinas, I.; Brown, R. M.; Wiens, G. D.

10.1101/420018 — microbiology — Posted on 2018-09-17

1292 Caprine humoral response to Burkholderia pseudomallei antigens during acute melioidosis from aerosol exposure

Yi, J.; Simpanya, M. F.; Settles, E. W.; Shannon, A. B.; Hernandez, K.; Pristo, L.; Keener, M.; Hornstra, H.; Busch, J. D.; Soffler, C.; Brett, P. J.; Currie, B. J.; Bowen, R. A.; Tuanyok, A.; Keim, P.

10.1101/420075 — immunology — Posted on 2018-09-17

1293 Chemical composition of essential oil from Folium nelumbinis and its antioxidant activity

Fan, y. x.; Zhang, q.; lin, j. x.; Chen, y.; Qian, l.; Li, k.; Lu, x.; Zheng, d. b.; Chen, L.

10.1101/419945 — plant biology — Posted on 2018-09-17

1294 Optimization of T-DNA architecture for Cas9-mediated mutagenesis in Arabidopsis

Castel, B.; Tomlinson, L.; Locci, F.; Yang, Y.; Jones, J. D. G.

10.1101/419952 — plant biology — Posted on 2018-09-17

1295 The in vitro toxicity of nitrile and epithionitrile derivatives of glucosinolates from rutabaga in human and bovine liver cells.

Latimer, I.; Collett, M.; Matthews, Z.; Tapper, B.; Cridge, B.

10.1101/419960 — pharmacology and toxicology — Posted on 2018-09-17

1296 Can pharmacological enhancement of the placebo effect be a novel therapy for working memory impairments?

Zhao, W.; Becker, B.; Yao, S.; Ma, X.; Kou, J.; Kendrick, K.

10.1101/416123 — neuroscience — Posted on 2018-09-17

1297 An \"inverse approach\" to the treatment of amblyopia

Zhou, J.; Wu, Y.; Chen, Y.; Chen, X.; Liang, Y.; Mao, Y.; Yao, Z.; He, Z.; Lu, F.; Qu, J.; Hess, R.

10.1101/418871 — neuroscience — Posted on 2018-09-17

1298 Bayesian Inference of Other Minds Explains Human Decisions in a Group Decision Making Task

Khalvati, K.; Park, S. A.; Philippe, R.; Sestito, M.; Dreher, J.-C.; Rao, R. P. N.

10.1101/419515 — neuroscience — Posted on 2018-09-17

1299 HIGH-CONTENT, CELL-BY-CELL ASSESSMENT OF HER2 OVEREXPRESSION AND AMPLIFICATION FOR HETEROGENEITY DETECTION IN BREAST CANCER

Nguyen, H. T.; Migliozzi, D.; Bisig, B.; de Leval, L.; Gijs, M. A. M.

10.1101/419499 — bioengineering — Posted on 2018-09-17

1300 Proving Osteoinductive Potential of a Decellularized Xenograft Bone Substitute

Bracey, D. N.; Jinnah, A. H.; Whitlock, P.; Hutchinson, I.; Seyler, T.; Willey, J. S.; Danelson, K.; Smith, T. L.; Emory, C. L.; Kerr, B. A.

10.1101/419101 — bioengineering — Posted on 2018-09-17

1301 Reward-driven changes in striatal pathway competition shape evidence evaluation in decision-making

Dunovan, K.; Vich, C.; Clapp, M.; Verstynen, T.; Rubin, J.

10.1101/418756 — neuroscience — Posted on 2018-09-17

1302 Developmental maturation of the precuneus as a functional core of the default-mode network

Li, R.; Utevsky, A.; Huettel, S.; Braams, B.; Peters, S.; Crone, E.; van Duijvenvoorde, A. C. K.

10.1101/419028 — neuroscience — Posted on 2018-09-17

1303 Validation of Prostate Cancer Risk Variants by CRISPR/Cas9 Mediated Genome Editing

Wang, X.; Hayes, J.; Xu, D.; Gao, X.; Mehta, D.; Lilja, H.; Klein, R.

10.1101/337022 — genetics — Posted on 2018-09-17

1304 Hox genes limit germ cell formation in the short germ insect Gryllus bimaculatus.

Barnett, A. A.; Nakamura, T.; Extavour, C. G.

10.1101/419119 — developmental biology — Posted on 2018-09-17

1305 A blood-based signature of cerebral spinal fluid Aβ1-42 status

Goudey, B.; Fung, B. J.; Schieber, C.; Faux, N. G.

10.1101/190207 — neuroscience — Posted on 2018-09-16

1306 Sexual conflict in self-fertile hermaphrodites: reproductive differences among species, and between individuals versus cohorts, in the leech genus Helobdella (Lophotrochozoa; Annelida; Clitellata; Hirudinida; Glossiphoniidae)

Iyer, R. G.; Rogers, D. V.; Winchell, C. J.; Weisblat, D. A.

10.1101/401901 — zoology — Posted on 2018-09-16

1307 Precursor microRNA Identification Using Deep Convolutional Neural Networks

Do, B. T.; Golkov, V.; Gürel, G. E.; Cremers, D.

10.1101/414656 — bioinformatics — Posted on 2018-09-16

1308 SuperCT: A supervised-learning-framework to enhance the characterization of single-cell transcriptomic profiles

Xie, P.; Gao, M.; Wang, C.; Noel, P.; Yang, C.; Von Hoff, D.; Han, H.; Zhang, M.; Lin, W.

10.1101/416719 — bioinformatics — Posted on 2018-09-16

1309 Modeling Sensory-Motor Decisions in Natural Behavior

Zhang, R.; Zhang, S.; Tong, M. H.; Cui, Y.; Rothkopf, C. A.; Ballard, D. H.; Hayhoe, M. M.

10.1101/412155 — neuroscience — Posted on 2018-09-16

1310 Probing variability in a cognitive map using manifold inference from neural dynamics

Low, R. J.; Lewallen, S.; Aronov, D.; Nevers, R.; Tank, D. W.

10.1101/418939 — neuroscience — Posted on 2018-09-16

1311 Forgetful inference in a sophisticated world model

Ahilan, S.; Solomon, R. B.; Breton, Y.-A.; Conover, K.; Niyogi, R. K.; Shizgal, P.; Dayan, P.

10.1101/419317 — neuroscience — Posted on 2018-09-16

1312 Transformation of Speech Sequences in Human Sensorimotor Circuits

Müsch, K.; Himberger, K.; Tan, K. M.; Valiante, T. A.; Honey, C. J.

10.1101/419358 — neuroscience — Posted on 2018-09-16

1313 Leveraging chromatin accessibility for transcriptional regulatory network inference in T Helper 17 Cells

Miraldi, E. R.; Pokrovskii, M.; Watters, A.; Castro, D. M.; De Veaux, N.; Hall, J. A.; Lee, J.-Y.; Ciofani, M.; Madar, A.; Carriero, N.; Littman, D. R.; Bonneau, R.

10.1101/292987 — systems biology — Posted on 2018-09-16

1314 Spectral Contrast Optical Coherence Tomography Angiography Enables Single-Scan Vessel Imaging

Winkelmann, J.; Eid, A.; Spicer, G.; Almassalha, L. M.; Nguyen, T.-Q.; Backman, V.

10.1101/406652 — biophysics — Posted on 2018-09-16

1315 Beating Swords into Ploughshares: Domestication of a Phage Lysin for Housekeeping Function

Randich, A. M.; Morlot, C.; Brun, Y. V.

10.1101/418723 — microbiology — Posted on 2018-09-16

1316 DNA-uptake pilus of Vibrio cholerae capable of kin-discriminated auto-aggregation

Adams, D. W.; Stutzmann, S.; Stoudmann, C.; Blokesch, M.

10.1101/354878 — microbiology — Posted on 2018-09-16

1317 Marine Fe-oxidizing Zetaproteobacteria: Historical, ecological, and genomic perspectives

McAllister, S. M.; Moore, R. M.; Gartman, A.; Luther, G. W.; Emerson, D.; Chan, C. S.

10.1101/416842 — microbiology — Posted on 2018-09-16

1318 Visualizing Deep Mutational Scan Data

Sruthi, C. K.; Balaram, H.; Prakash, M. K.

10.1101/418525 — biochemistry — Posted on 2018-09-16

1319 Timing mechanism of sexually dimorphic nervous system differentiation

Pereira, L.; Aeschimann, F.; Wang, C.; Lawson, H.; Serrano-Saiz, E.; Portman, D. S.; Grosshans, H.; Hobert, O.

10.1101/416735 — neuroscience — Posted on 2018-09-16

1320 Temporal and spatial asymmetries during stationary cycling cause different feedforward and feedback modifications in the muscular control of the lower limbs

Zych, M.; Rankin, I.; Holland, D.; Severini, G.

10.1101/370262 — neuroscience — Posted on 2018-09-16

1321 Exploring Various Polygenic Risk Scores for Skin Cancer in the Phenomes of the Michigan Genomics Initiative and the UK Biobank with a Visual Catalog: PRSWeb

Fritsche, L. G.; Beesley, L. J.; VandeHaar, P.; Peng, R. B.; Salvatore, M.; Zawistowski, M.; Gagliano, S.; Das, S.; LeFaive, J.; Kaleba, E. O.; Klumpner, T. T.; Moser, S. E.; Blanc, V.; Brummett, C.; Kheterpal, S.; Abecasis, G.; Gruber, S. B.; Mukherjee, B.

10.1101/384909 — genetics — Posted on 2018-09-16

1322 Agronomic Linked Data (AgroLD): a Knowledge-based System to Enable Integrative Biology in Agronomy

Venkatesan, A.; Tagny Ngompe, G.; Hassouni, N. E.; Chentli, I.; Guignon, V.; Jonquet, C.; Ruiz, M.; Larmande, P.

10.1101/325423 — bioinformatics — Posted on 2018-09-16

1323 A tunable dual-input system for ‘on-demand’ dynamic gene expression regulation

Pedone, E.; Lazzarini Rocca, D.; Postiglione, L.; Aulicino, F.; Montes-Olivas, S.; di Bernardo, D.; Cosma, M. P.; Marucci, L.

10.1101/404699 — synthetic biology — Posted on 2018-09-16

1324 Gut microbiome of an unindustrialized population have characteristic enrichment of SNPs in species and functions with the succession of seasons

Ning, K.; Qin, J.; Tan, C.

10.1101/418889 — microbiology — Posted on 2018-09-16

1325 Phenotypic variability correlates with clinical outcome in Cryptococcus isolates obtained from Botswanan HIV/AIDS patients

Carter, D. A.; Fernandes, K. E.; Brockway, A.; Haverkamp, M.; Cuomo, C. A.; Van Ogtrop, F.; Perfect, J. R.

10.1101/418897 — microbiology — Posted on 2018-09-16

1326 Automated in situ profiling of chromatin modifications resolves cell types and gene regulatory programs

Janssens, D. H.; Wu, S. J.; Sarthy, J. F.; Meers, M. P.; Myers, C. H.; Olson, J. M.; Ahmad, K.; Henikoff, S.

10.1101/418681 — genomics — Posted on 2018-09-16

1327 Higher order assembling of the mycobacterial essential polar growth factor DivIVA/Wag31

Choukate, K.; Gupta, A.; Basu, B.; Virk, K.; Ganguli, M.; Chaudhuri, B.

10.1101/394452 — biophysics — Posted on 2018-09-16

1328 A seed resource for screening functionally redundant genes and isolation of new mutants impaired in CO2 and ABA responses

Hauser, F.; Ceciliato, P. H. d. O.; Lin, Y.-C.; Guo, D.; Gregerson, J.; Abbasi, N.; Youhanna, D.; Park, J.; Dubeaux, G.; Shani, E.; Poomchongkho, N.; Schroeder, J.

10.1101/415976 — plant biology — Posted on 2018-09-16

1329 Evolutionary analysis of base-pairing interactions in DNA and RNA secondary structures

Golden, M. T.; Murrell, B.; Martin, D.; Hein, J.

10.1101/419341 — molecular biology — Posted on 2018-09-16

1330 Gut microbial compositions mirror caste-specific diets in a major lineage of eusocial insects

Otani, S.; Zhukova, M.; Abdoulaye Kone, N.; da Costa, R. R.; Mikaelyan, A.; Sapountzis, P.; Poulsen, M.

10.1101/418954 — microbiology — Posted on 2018-09-16

1331 Natural variation in the C. elegans autophagy response and clearance of intracellular microsporidia

Balla, K.; Lazetic, V.; Troemel, E.

10.1101/418749 — immunology — Posted on 2018-09-16

1332 Synthetic genome defenses against selfish DNA elements stabilize engineered bacteria against evolutionary failure

Geng, P.; Leonard, S. P.; Mishler, D. M.; Barrick, J. E.

10.1101/419283 — evolutionary biology — Posted on 2018-09-16

1333 Quantitative multi-locus metabarcoding and waggle dance interpretation reveal honey bee spring foraging patterns in Midwest agroecosystems

Richardson, R.; Curtis, H.; Matcham, E. G.; Hua-Lin, C.; Suresh, S.; Sponsler, D.; Hearon, L.; Johnson, R.

10.1101/418590 — ecology — Posted on 2018-09-16

1334 Systematic Prediction of Regulatory Motifs from Human ChIP-Sequencing Data Based on a Deep Learning Framework

Yang, J.; Hoppe, A. D.; Liu, B.; Ma, Q.

10.1101/417378 — bioinformatics — Posted on 2018-09-16

1335 Evaluating FAIR-Compliance Through an Objective, Automated, Community-Governed Framework

Wilkinson, M. D.; Dumontier, M.; Sansone, S.-A.; Bonino da Silva Santos, L. O.; Prieto, M.; Gautier, J.; McQuilton, P.; Murphy, D.; Crosas, M.; Schultes, E.

10.1101/418376 — scientific communication and education — Posted on 2018-09-16

1336 Genotypic clustering does not imply recent tuberculosis transmission in a high prevalence setting: A genomic epidemiology study in Lima, Peru

Dixit, A.; Freschi, L.; Vargas, R.; Calderon, R.; Sacchettini, J.; Drobniewski, F.; Galea, J. T.; Contreras, C.; Yataco, R.; Zhang, Z.; Lecca, L.; Kolokotronis, S.-O.; Mathema, B.; Farhat, M. R.

10.1101/418202 — microbiology — Posted on 2018-09-16

1337 Exploring the Binding Mechanism between Human Profilin (PFN1) and Polyproline-10 through Binding Mode Screening

Zhang, L.; Bell, D. R.; Luan, B.; Zhou, R.

10.1101/418830 — biophysics — Posted on 2018-09-16

1338 SuperCT: A supervised-learning-framework to enhance the characterization of single-cell transcriptomic profiles

Lin, W.; Zhang, M.; Xie, P.; Gao, M.; Wang, C.; Noel, P.; Yang, C.; Von Hoff, D.; Han, H.

10.1101/416719 — bioinformatics — Posted on 2018-09-16

1339 Multi-omic tumor data reveal diversity of molecular mechanisms that correlate with survival

Ramazzotti, D.; Lal, A.; Wang, B.; Batzoglou, S.; Sidow, A.

10.1101/267245 — cancer biology — Posted on 2018-09-16

1340 Euplotid: A quantized geometric model of the eukaryotic cell

Borges-Rivera, D.

10.1101/170159 — biophysics — Posted on 2018-09-16

1341 Neural responses to natural and model-matched stimuli reveal distinct computations in primary and non-primary auditory cortex

Norman-Haignere, S. V.; McDermott, J. H.

10.1101/419168 — neuroscience — Posted on 2018-09-16

1342 Redundant and cryptic enhancer activities of the Drosophila yellow gene

Kalay, G.; Lachowiec, J.; Rosas, U.; Dome, M. R.; Wittkopp, P. J.

10.1101/419226 — evolutionary biology — Posted on 2018-09-16

1343 Visualizing ATP-dependent substrate-processing dynamics of the human 26S proteasome at near-atomic resolution

Dong, Y.; Zhang, S.; Wu, Z.; Li, X.; Wang, W. L.; Zhu, Y.; Stoilova-McPhie, S.; Lu, Y.; Finley, D.; Mao, Y.

10.1101/419051 — biochemistry — Posted on 2018-09-16

1344 The genetic basis of mutation rate variation in yeast

Gou, L.; Bloom, J. S.; Kruglyak, L.

10.1101/338723 — genetics — Posted on 2018-09-15

1345 Endothelial Cells Filopodia Participation In The Anastomosis Of CNS Capillaries

Marin-Padilla, M.; Howard, L.

10.1101/415307 — neuroscience — Posted on 2018-09-15

1346 Comparative analysis of droplet-based ultra-high-throughput single-cell RNA-seq systems

Zhang, X.; Li, T.; Liu, F.; Chen, Y.; Yao, J.; Li, Z.; Huang, Y.; Wang, J.

10.1101/313130 — genomics — Posted on 2018-09-15

1347 Theory on the looping mediated stochastic propulsion of transcription factors along DNA

Murugan, R.

10.1101/418947 — biophysics — Posted on 2018-09-15

1348 Accurate analysis of genuine CRISPR editing events with ampliCan

Labun, K.; Guo, X.; Chavez, A.; Church, G.; Gagnon, J. A.; Valen, E.

10.1101/249474 — bioinformatics — Posted on 2018-09-15

1349 Practical model selection for prospective virtual screening

Liu, S.; Alnammi, M.; Ericksen, S. S.; Voter, A. F.; Ananiev, G. E.; Keck, J. L.; Hoffmann, F. M.; Wildman, S. A.; Gitter, A.

10.1101/337956 — biochemistry — Posted on 2018-09-15

1350 Genetic architecture and selective sweeps after polygenic adaptation to distant trait optima

Stetter, M. G.; Thornton, K.; Ross-Ibarra, J.

10.1101/313247 — evolutionary biology — Posted on 2018-09-15

1351 Stochastic Simulation to Visualize Gene Expression and Error Correction in Living Cells

Chen, K. Y.; Zuckerman, D. M.; Nelson, P. C.

10.1101/418772 — biophysics — Posted on 2018-09-15

1352 iSEE: Interface Structure, Evolution and Energy-based machine learning predictor of binding affinity changes upon mutations

Geng, C.; Vangone, A.; Folkers, G. E.; Xue, L. C.; Bonvin, A. M. J. J.

10.1101/331280 — bioinformatics — Posted on 2018-09-15

1353 A fully automated spike sorting algorithm using t-distributed neighbor embedding and density based clustering

Nadian, M. H.; Karimimehr, S.; Doostmohammadi, J.; Ghazizadeh, A.; Lashgari, R.

10.1101/418913 — neuroscience — Posted on 2018-09-15

1354 Nodal and Eph signalling relay drives the transition between apical constriction and apico-basal shortening during ascidian endoderm invagination

Fiuza, U.-M.; Negishi, T.; Rouan, A.; Yasuo, H.; Lemaire, P.

10.1101/418988 — developmental biology — Posted on 2018-09-15

1355 Rat bone marrow derived mesenchymal stem cells differentiate to germ cell like cells

Kumar, K.; Das, K.; AP, M.; Kumar, A.; Singh, P.; Mondal, T.; Bag, S.

10.1101/418962 — cell biology — Posted on 2018-09-15

1356 Active protein neddylation or ubiquitylation is dispensable for stress granule dynamics

Markmiller, S.; Fulzele, A.; Higgins, R.; Yeo, G.; Bennett, E. J.

10.1101/418848 — cell biology — Posted on 2018-09-15

1357 Short-hairpin RNA-guided single gene knockdown reverses triple-negative breast cancer

Chen, D.-M.; Shi, Z.-Q.; Tan, L.-L.; Chen, Y.-P.; Li, C.-Q.; Wang, Q.; Li, H.; Zhang, M.-L.; Song, J.-P.; Xu, Q.; Zeng, Q.-P.

10.1101/418764 — cancer biology — Posted on 2018-09-15

1358 A post-transcriptional program of chemoresistance by AU-rich elements/TTP in cancer quiescence

Lee, S.; Micalizzi, D.; Truesdell, S. S.; Bukhari, S. I.; Boukhali, M.; Lombardi-Story, J.; Kato, Y.; Dey-Guha, I.; Nicholson, B. T.; Choo, M.-K.; Myers, D. T.; Lee, D.; Mazzola, M. A.; Raheja, R.; Langenbucher, A.; Haradhvala, N. J.; Lawrence, M.; Gandhi, R.; Sweetser, D. A.; Sykes, D.; Haas, W.; Haber, D. A.; Maheswaran, S.; Vasudevan, S.

10.1101/418715 — cancer biology — Posted on 2018-09-15

1359 High throughput gene expression profiling of yeast colonies with microgel-culture Drop-seq

Liu, L.; Dalal, C.; Heineike, B.; Abate, A.

10.1101/416966 — bioengineering — Posted on 2018-09-15

1360 The effect of physiological and measurement noise on the estimate of individual muscle force from indirect measurements of muscle activity

Zonnino, A.; Sergi, F.

10.1101/418822 — bioengineering — Posted on 2018-09-15

1361 IL-10 and ICOS differentially regulate T cell responses in the brain during chronic Toxoplasma gondii infection

O'Brien, C. A.; Batista, S. J.; Still, K. M.; Harris, T.

10.1101/418665 — immunology — Posted on 2018-09-15

1362 Inferring Sequence-Structure Preferences of RNA-Binding Proteins with Convolutional Residual Networks

Koo, P. K.; Anand, P.; Paul, S. B.; Eddy, S. R.

10.1101/418459 — genomics — Posted on 2018-09-15

1363 SLiM 3: Forward genetic simulations beyond the Wright-Fisher model

Haller, B. C.; Messer, P. W.

10.1101/418657 — evolutionary biology — Posted on 2018-09-15

1364 Precise re-deposition of nucleosomes on repressive chromatin domains sustain epigenetic inheritance during DNA replication

Escobar, T.; Oksuz, O.; Descostes, N.; Bonasio, R.; Reinberg, D.

10.1101/418707 — biochemistry — Posted on 2018-09-15

1365 Effects of Nicotine and THC Vapor Inhalation Administered by An Electronic Nicotine Delivery System (ENDS) in Male Rats

Javadi-Paydar, M.; Cole, M.; Taffe, M. A.

10.1101/418699 — pharmacology and toxicology — Posted on 2018-09-15

1366 Chromatin changes induced by a Plasmodium falciparum infection in Anopheles gambiae

Ruiz, J. F.; Yerbanga, R. S.; Lefevre, T.; Ouedraogo, J. B.; Corces, V. G.; Gomez-Diaz, E.

10.1101/418442 — molecular biology — Posted on 2018-09-15

1367 Mitotic replisome disassembly in vertebrates

Gambus, A.; Priego Moreno, S.; Jones, R. M.; Poovathumkadavil, D.

10.1101/418368 — molecular biology — Posted on 2018-09-15

1368 High-throughput identification of dominant negative polypeptides in yeast

Dorrity, M. W.; Queitsch, C.; Fields, S.

10.1101/418608 — genomics — Posted on 2018-09-15

1369 RawTools: Rapid and Dynamic Interrogation of Orbitrap Data Files for Mass Spectrometer System Management

Kovalchik, K. A.; Colborne, S.; Spencer, S.; Sorensen, P. H.; Chen, D. D. Y.; Morin, G. B.; Hughes, C. S.

10.1101/418400 — bioinformatics — Posted on 2018-09-15

1370 Olfactory object recognition based on fine-scale stimulus timing in Drosophila

Sehdev, A.; Mohammed, Y. G.; Triphan, T.; Szyszka, P.

10.1101/418632 — animal behavior and cognition — Posted on 2018-09-15

1371 Two central pattern generators from the crab, Cancer borealis, respond robustly and differentially to extreme extracellular pH

Haley, J. A.; Hampton, D.; Marder, E.

10.1101/374405 — neuroscience — Posted on 2018-09-14

1372 Predicting E. coli concentrations using limited qPCR deployments at Chicago beaches

Lucius, N.; Rose, K.; Osborn, C.; Sweeney, M. E.; Chesak, R.; Little, D. Y.; Beslow, S.; Schenk, T.

10.1101/250480 — bioinformatics — Posted on 2018-09-14

1373 Tau Secretion and Propagation Is Regulated by p300/CBP via Autophagy-Lysosomal Pathway in Tauopathy

Chen, X.; Li, Y.; Wang, C.; Tang, Y.; Mok, S.-A.; Tsai, R. M.; Rojas, J. C.; Karydas, A.; Miller, B. L.; Boxer, A. L.; Gestwicki, J. E.; Cuervo, A. M.; Arkin, M.; Gan, L.

10.1101/418640 — neuroscience — Posted on 2018-09-14

1374 Gamma oscillations coordinate different theta rhythms in the hippocampus

Lopez-Madrona, V. J.; Alvarez-Salvado, E.; Moratal, D.; Herreras, O.; Pereda, E.; Mirasso, C. R.; Canals, S.

10.1101/418434 — neuroscience — Posted on 2018-09-14

1375 Aβ Fibrils Can Act as Aqueous Pores: a Molecular Dynamics Study

Haddadian, E. J.; Natesh, S.; Sachleben, J. R.; Sosnick, T. R.; Freed, K.; Meredith, S. C.

10.1101/418137 — neuroscience — Posted on 2018-09-14

1376 Laboratory evolution reveals a two-dimensional rate-yield tradeoff in microbial metabolism

Cheng, C.; O'Brien, E. J.; McCloskey, D.; Utrilla, J.; Olson, C.; LaCroix, R. A.; Sandberg, T. E.; Feist, A. M.; Palsson, B. O.; King, Z. A.

10.1101/414912 — microbiology — Posted on 2018-09-14

1377 Physical interactions reduce the power of natural selection in growing yeast colonies

Giometto, A.; Nelson, D. R.; Murray, A. W.

10.1101/332700 — biophysics — Posted on 2018-09-14

1378 Relative Principal Components Analysis: Application to Analyzing Biomolecular Conformational Changes

Ahmad, M.; Helms, V.; Kalinina, O. V.; Lengauer, T.

10.1101/409474 — biophysics — Posted on 2018-09-14

1379 Expectations May Influence the Effects of Transcranial Direct Current Stimulation

Rabipour, S.; Wu, A. D.; Davidson, P. S. R.; Iacoboni, M.

10.1101/279554 — neuroscience — Posted on 2018-09-14

1380 Phylogeny, evidence for a cryptic plastid, and distribution of Chytriodinium parasites (Dinophyceae) infecting copepods

Strassert, J. F. H.; Hehenberger, E.; del Campo, J.; Okamoto, N.; Kolisko, M.; Richards, T. A.; Worden, A. Z.; Santoro, A. E.; Keeling, P. J.

10.1101/418467 — microbiology — Posted on 2018-09-14

1381 Evolutionary dynamics of bacteria in the gut microbiome within and across hosts

Garud, N. R.; Good, B. H.; Hallatschek, O.; Pollard, K. S.

10.1101/210955 — evolutionary biology — Posted on 2018-09-14

1382 Hyperconnectivity of the default mode network in multiorgan dysfunction syndrome

Jimenez-Marin, A.; Rivera, D.; Boado, V.; Diez, I.; Labayen, F.; Garrido, I.; Ramos-Usuga, D.; Rasero, J.; Cabrera, A.; Stramaglia, S.; Arango-Lasprilla, J. C.; Cortes, J. M.

10.1101/418160 — neuroscience — Posted on 2018-09-14

1383 Heat-shock inducible CRISPR/Cas9 system generates heritable mutations in rice

Nandy, S.; Pathak, B.; Zhao, S.; Srivastava, V.

10.1101/418517 — plant biology — Posted on 2018-09-14

1384 Progressive Mycobacterium abscessus lung infection in C3HeB/FeJ mice associated with corticosteroid administration

Maggioncalda, E. C.; Story-Roller, E.; Ammerman, N. C.; Nuermberger, E. L.; Lamichhane, G.

10.1101/418491 — microbiology — Posted on 2018-09-14

1385 Spatial Chromatin Architecture Alteration by Structural Variations in Human Genomes at Population Scale

Sadowski, M.; Kraft, A.; Szalaj, P.; Wlasnowolski, M.; Tang, Z.; Ruan, Y.; Plewczynski, D.

10.1101/266981 — genomics — Posted on 2018-09-14

1386 A Genome-Wide Association Study Identifies SNP Markers for Virulence in Magnaporthe oryzae Isolates from Sub-Saharan Africa

Devi Ganeshan, V.; Opiyo, S. O.; Mutiga, S. K.; Rotich, F.; Thuranira, D. M.; Were, V. M.; Ouedraogo, I.; Zhou, B.; Soanes, D. M.; Correll, J. C.; Wang, G.-L.; Talbot, N. J.; Mitchell, T. K.

10.1101/418509 — genetics — Posted on 2018-09-14

1387 Alcohol consumption and mate choice in UK Biobank: comparing observational and Mendelian randomization estimates

Howe, L. J.; Lawson, D. J.; Davies, N. M.; St. Pourcain, B.; Lewis, S. J.; Davey Smith, G.; Hemani, G.

10.1101/418269 — genetics — Posted on 2018-09-14

1388 Time-calibrated tree reconciliations reveal frequent losses, intrahost speciations, and host switches in the evolution of herpesviruses

Brito, A. F.; Pinney, J. W.

10.1101/418111 — evolutionary biology — Posted on 2018-09-14

1389 Cryo-electron microscopy structure of the lipid droplet-formation protein seipin

Sui, X.; Arlt, H.; Brook, K.; Lai, Z. W.; DiMaio, F.; Marks, D.; Liao, M.; Farese, R.; Walther, T.

10.1101/418236 — cell biology — Posted on 2018-09-14

1390 Active Transport of Membrane Components by Self-Organization of the Min Proteins

Shih, Y.-L.; Huang, L.-T.; Tu, Y.-M.; Lee, B.-F.; Bau, Y.-C.; Hong, C. Y.; Lee, H.-l.; Shih, Y.-P.; Hsu, M.-F.; Chen, J.-S.; Lu, Z.-X.; Chao, L.

10.1101/418384 — biophysics — Posted on 2018-09-14

1391 neoepiscope Improves Neoepitope Prediction with Multi-variant Phasing

Wood, M. A.; Nguyen, A.; Struck, A. J.; Ellrott, K.; Nellore, A.; Thompson, R. F.

10.1101/418129 — bioinformatics — Posted on 2018-09-14

1392 Heading computation in the human retrosplenial complex during full-body rotation

Gramann, K.; Hohlefeld, F. U.; Gehrke, L.; Klug, M.

10.1101/417972 — neuroscience — Posted on 2018-09-14

1393 Generalization via superposition: Combined effects of mixed reference frame representations for explicit and implicit learning in a visuomotor adaptation task.

Poh, E.; Taylor, J. A.

10.1101/415869 — neuroscience — Posted on 2018-09-14

1394 Systemic inflammation following long-term successful antiretroviral therapy in people living with HIV (PLHIV)

Babu, H.; Ambikan, A. T.; Gabriel, E. E.; Akusaravi, S. S.; Muppani, N. R.; Sperk, M.; Cheedarla, N.; Palaniapan, A. N.; Sridhar, R.; Sundaraj, V.; Tripathy, S. P.; Nowak, P.; Hanna, L. E.; Neogi, U.

10.1101/418012 — immunology — Posted on 2018-09-14

1395 Direct observation of individual tubulin dimers binding to growing microtubules

Mickolajczyk, K. J.; Geyer, E. A.; Kim, T.; Rice, L. M.; Hancock, W. O.

10.1101/418053 — biophysics — Posted on 2018-09-14

1396 Uncured PDMS Inhibits Myosin In Vitro Motility in a Microfluidic Flow Cell

Wang, Y.; Burghardt, T. P.

10.1101/418327 — biophysics — Posted on 2018-09-14

1397 Multi-laminate Annulus Fibrosus Repair Scaffold with an Interlamellar Matrix Enhances Impact Resistance, Prevents Herniation and Assists in Restoring Spinal Kinematics

Borem, R.; Madeline, A.; Vela, R.; Gill, S.; Mercuri, J.

10.1101/418103 — bioengineering — Posted on 2018-09-14

1398 A multi-scale model reveals cellular and physiological mechanisms underlying hyperpolarisation-gated synaptic plasticity

Xie, Y.; Kazmierczyk, M.; Graham, B. P.; Dutia, M. B.; Stefan, M. I.

10.1101/418228 — neuroscience — Posted on 2018-09-14

1399 Yeast Models Of Phosphomannomutase 2 Deficiency, A Congenital Disorder Of Glycosylation

Lao, J. P.; DiPrimio, N.; Prangley, M.; Sam, F. S.; Mast, J. D.; Perlstein, E. O.

10.1101/414862 — genetics — Posted on 2018-09-14

1400 The key protein of endosomal mRNP transport binds translational landmark sites of cargo mRNAs

Olgeiser, L.; Haag, C.; Boerner, S.; Ule, J.; Busch, A.; Konig, J.; Feldbrugge, M.; Zarnack, K.

10.1101/418079 — cell biology — Posted on 2018-09-14

1401 Distributed plasticity drives visual habituation learning in larval zebrafish

Randlett, O.; Haesemeyer, M.; Forkin, G.; Shoenhard, H.; Schier, A. F.; Engert, F.; Granato, M.

10.1101/418178 — neuroscience — Posted on 2018-09-14

1402 The Central Nervous System Acts As A Transducer Of Stress-Induced Masculinization Through Corticotropin-Releasing Hormone B

Castaneda Cortes, D. C.; Arias Padilla, L. F.; Langlois, V. S.; Somoza, G. M.; Fernandino, J.

10.1101/415554 — developmental biology — Posted on 2018-09-14

1403 Emergent populations derived with unsupervised learning of human whole genomes

Njie, e. G.

10.1101/329789 — genomics — Posted on 2018-09-14

1404 Stage specific classification of DEGs via statistical profiling and network analysis reveals potential biomarker associated with various stages of TB

Alam, A.; Imam, N.; Ahmed, M. M.; Tazyeen, S.; Farooqui, A.; Ali, S.; Malik, M. Z.; Ishrat, R.

10.1101/414110 — systems biology — Posted on 2018-09-14

1405 Fast temporal dynamics and causal relevance of face processing in the human temporal cortex

Schrouff, J. V.; Raccah, O.; Baek, S.; Rangarajan, V.; Salehi, S.; Mourao-Miranda, J.; Helili, Z.; Daitch, A. L.; Parvizi, J.

10.1101/416214 — neuroscience — Posted on 2018-09-14

1406 Sentence processing is modulated by the current linguistic environment and a priori information: An fMRI study

Weber, K.; Micheli, C.; Ruigendijk, E.; Rieger, J.

10.1101/416404 — neuroscience — Posted on 2018-09-14

1407 Inoculation with Pisolithus tinctorius may ameliorate acid rain impacts on soil microbial communities associated with Pinus massoniana seedlings

Maltz, M. R.; Chen, Z.; Cao, J.; Arogyaswamy, K.; Shulman, H.; Aronson, E.

10.1101/416834 — ecology — Posted on 2018-09-14

1408 Identification of potential microRNAs associated with Herpesvirus family based on bioinformatic analysis

Lamkiewicz, K.; Barth, E.; Marz, M.; Ibrahim, B.

10.1101/417782 — bioinformatics — Posted on 2018-09-14

1409 Multiple modulation synthesis with high spatial resolution for noninvasive deep neurostimulation

Xiao, Q.; Lai, X.; Chen, H.

10.1101/416057 — neuroscience — Posted on 2018-09-14

1410 The human ventromedial prefrontal cortex sulcal morphology and its influence on its functional organization.

Lopez-Persem, A.; Verhagen, L.; Amiez, C.; Petrides, M.; Sallet, J.

10.1101/417824 — neuroscience — Posted on 2018-09-14

1411 Determination of host cell proteins constituting the molecular microenvironment of coronavirus replicase complexes by proximity-labeling

V'kovski, P.; Gerber, M.; Kelly, J.; Pfaender, S.; Ebert, N.; Braga Lagache, S.; Simillion, C.; Portmann, J.; Stalder, H.; Gaschen, V.; Bruggmann, R.; Stoffel, M.; Heller, M.; Dijkman, R.; Thiel, V.

10.1101/417907 — microbiology — Posted on 2018-09-14

1412 Measuring Selection Across HIV Gag: Combining Physico-Chemistry and Population Genetics

Gilchrist, M.; Johnson, E. G.

10.1101/204297 — evolutionary biology — Posted on 2018-09-14

1413 A guide to performing Polygenic Risk Score analyses

Choi, S. W.; Mak, T. S. H.; O'Reilly, P.

10.1101/416545 — genomics — Posted on 2018-09-14

1414 DNA copy number imbalances in primary cutaneous lymphomas (PCL)

Gug, G.; Huang, Q.; Chiticariu, E.; Solovan, C.; Baudis, M.

10.1101/417766 — cancer biology — Posted on 2018-09-14

1415 Deuteros: software for rapid analysis and visualization of data from differential hydrogen deuterium exchange-mass spectrometry

Lau, A. M. C.; Ahdash, Z.; Martens, C.; Politis, A.

10.1101/417998 — bioinformatics — Posted on 2018-09-14

1416 Quantitative proteomics reveals key roles for post-transcriptional gene regulation in the molecular pathology of FSHD

Jagannathan, S.; Ogata, Y.; Gafken, P.; Tapscott, S. J.; Bradley, R. K.

10.1101/417790 — genomics — Posted on 2018-09-14

1417 Genome-wide association study of suicide attempt in psychiatric disorders identifies association with major depression polygenic risk scores

Mullins, N.; Bigdeli, T. B.; Borglum, A.; Coleman, J. R.; Demontis, D.; Fanous, A.; Mehta, D.; Power, R. A.; Ripke, S.; Stahl, E.; Starnawska, A.; Major Depressive Disorder Working Group of the Psychiatric Genomics Consortium, ; Bipolar Disorder Working Group of the Psychiatric Genomics Consortium, ; Schizophrenia Working Group of the Psychiatric Genomics Consortium, ; Kendler, K. S.; McQuillin, A.; Lewis, C. M.

10.1101/416008 — genetics — Posted on 2018-09-14

1418 Expansion history and environmental suitability shape effective population size in a plant invasion

Braasch, J. E.; Barker, B. S.; Dlugosch, K. M.

10.1101/416693 — ecology — Posted on 2018-09-14

1419 Mian: Interactive Web-Based 16S rRNA Operational Taxonomic Unit Table Data Visualization and Discovery Platform

Jin, B. T.

10.1101/416073 — bioinformatics — Posted on 2018-09-14

1420 Synthetic Metabolic Pathway for the Production of 1-Alkenes from Lignin-derived Molecules

Luo, J.; Lehtinen, T.; Efimova, E.; Santala, V.; Santala, S.

10.1101/417857 — bioengineering — Posted on 2018-09-14

1421 Foraging as an evidence accumulation process

Davidson, J.; El-Hady, A.

10.1101/416602 — animal behavior and cognition — Posted on 2018-09-14

1422 The PCR Simulator: an on-line application for teaching Design of Experiments and the polymerase chain reaction

Fellermann, H.; Shirt-Ediss, B.; Koryza, J. W.; Linsley, M.; Lendrem, D.; Howard, T.

10.1101/415042 — scientific communication and education — Posted on 2018-09-14

1423 Evaluating the evidence for biotypes of depression: attempted replication of Drysdale et.al. 2017

Dinga, R.; Schmaal, L.; Penninx, B.; van Tol, M. J.; Veltman, D.; van Velzen, L.; van der Wee, N.; Marquand, A.

10.1101/416321 — neuroscience — Posted on 2018-09-14

1424 Gut Microbiota in male patients with chronic traumatic complete spinal cord injury

Zhang, C.; Zhang, W.; Zhang, J.; Jing, Y.; Yang, M.; Du, L.; Gao, F.; Gong, H.; Chen, L.; Li, J.; Liu, H.; Qin, C.; Jia, Y.; Qiao, J.; Wei, B.; Yu, Y.; Zhou, H.; Liu, Z.; Yang, D.; Li, J.

10.1101/417709 — neuroscience — Posted on 2018-09-14

1425 Modeling the Electro-chemical Properties of Microbial Opsin ChrimsonR for Application to Optogenetics-based Vision Restoration

Sabatier, Q.; Joffrois, C.; Gauvais, G.; Chavas, J.; Pruneau, D.; Picaud, S.; Benosman, R.

10.1101/417899 — neuroscience — Posted on 2018-09-14

1426 Identification of genome-wide nucleotide sites associated with mammalian virulence in influenza A viruses

Peng, Y.; Zhu, W.; Feng, Z.; Zhu, Z.; Zhang, Z.; Chen, Y.; Liu, S.; Wu, A.; Wang, D.; Shu, Y.; Jiang, T.

10.1101/416586 — microbiology — Posted on 2018-09-14

1427 Ultra-high throughput multiplexing and sequencing of >500 bp amplicon regions on the Illumina HiSeq 2500 platform

Holm, J. B.; Humphrys, M.; Robinson, C. K.; Settles, M. L.; Ott, S.; Fu, L.; Yang, H.; Gajer, P.; He, X.; McComb, E. J.; Gravitt, P.; Ghanem, K. G.; Brotman, R. M.; Ravel, J.

10.1101/417618 — microbiology — Posted on 2018-09-14

1428 Polygenic Prediction via Bayesian Regression and Continuous Shrinkage Priors

Ge, T.; Chen, C.-Y.; Ni, Y.; Feng, Y.-C. A.; Smoller, J. W.

10.1101/416859 — genetics — Posted on 2018-09-14

1429 Skepticism toward adaptive signals in DNA sequence comparisons - Is the neutral theory dead yet?

He, Z.; Chen, Q.; Yang, H.; Chen, Q.; Shi, S.; Wu, C.-I.

10.1101/417717 — evolutionary biology — Posted on 2018-09-14

1430 Tree reconciliation combined with subsampling improves large scale inference of orthologous group hierarchies

Heller, D.; Szklarczyk, D.; von Mering, C.

10.1101/417840 — bioinformatics — Posted on 2018-09-14

1431 Proteus: an R package for downstream analysis of MaxQuant output

Gierlinski, M.; Gastaldello, F.; Barton, G. J.

10.1101/416511 — bioinformatics — Posted on 2018-09-14

1432 Does voluntary wheel running exist in Neotropical wild mammals?

van Lunteren, P.; Groenewold, M. A.; Pozsgai, G.; Sarvary, J.

10.1101/409409 — animal behavior and cognition — Posted on 2018-09-14

1433 Proximal perimeter encoding in the rat rostral thalamus

Matulewicz, P.; Ulrich, K.; Mathiasen, M.; Aggleton, J.; O'Mara, S.

10.1101/417881 — neuroscience — Posted on 2018-09-14

1434 Stability and sensitivity of structural connectomes: effect of thresholding and filtering and demonstration in neurodegeneration

McColgan, P.; Blom, T.; Rees, G.; Seunarine, K.; Gregory, S.; Johnson, E.; Durr, A.; Roos, R.; Scahill, R.; Clark, C.; Tabrizi, S.; Razi, A.

10.1101/416826 — neuroscience — Posted on 2018-09-14

1435 Telomere length, individual quality and fitness in female European starlings (Sturnus vulgaris) during breeding

Criscuolo, F.; Fowler, M.; Fuhrer, V.; ZAHN, S.; Williams, T.

10.1101/416438 — evolutionary biology — Posted on 2018-09-14

1436 Fungal community assembly in soils and roots under plant invasion and nitrogen deposition

Phillips, M. L.; Weber, S. E.; Andrews, L. V.; Aronson, E.; Allen, M. F.; Allen, E. B.

10.1101/416818 — ecology — Posted on 2018-09-14

1437 Accelerating the Calculation of Protein-Ligand Binding Free Energy and residence Times using Dynamically Optimized Collective Variables

Brotzakis, Z. F.; Limongelli, V.; Parrinello, M.

10.1101/417915 — biophysics — Posted on 2018-09-14

1438 NetWheels: A web application to create high quality peptide helical wheel and net projections.

Mol, A. R.; S. Castro, M.; Fontes, W.

10.1101/416347 — bioinformatics — Posted on 2018-09-14

1439 Transite: A computational motif-based analysis platform that identifies RNA-binding proteins modulating changes in gene expression

Krismer, K.; Varmeh, S.; Bird, M. A.; Gattinger, A.; Kong, Y. W.; Bernwinkler, T.; Anderson, D. A.; Heinzel, A.; Joughin, B. A.; Cannell, I. G.; Yaffe, M. B.

10.1101/416743 — bioinformatics — Posted on 2018-09-14

1440 SLIMEr: probing flexibility of lipid metabolism in yeast with an improved constraint-based modeling framework

Sanchez, B. J.; Li, F.; Kerkhoven, E. J.; Nielsen, J.

10.1101/324863 — systems biology — Posted on 2018-09-14

1441 Deepbinner: Demultiplexing barcoded Oxford Nanopore reads with deep convolutional neural networks

Wick, R. R.; Judd, L. M.; Holt, K. E.

10.1101/366526 — bioinformatics — Posted on 2018-09-14

1442 Simultaneous multi-area recordings suggest a novel hypothesis about how attention improves performance

Ruff, D. A.; Cohen, M. R.

10.1101/372888 — neuroscience — Posted on 2018-09-14

1443 Haploinsufficiency of the schizophrenia risk gene Cyfip1 causes abnormal postnatal hippocampal neurogenesis through a novel microglia dependent mechanism

Haan, N.; Carter, J.; Westacott, L. J.; Owen, M. J.; Gray, W. P.; Hall, J.; Wilkinson, L. S.

10.1101/417832 — neuroscience — Posted on 2018-09-14

1444 Suppressive waves disambiguate the representation of long-range apparent motion in awake monkey V1

Chemla, S.; Reynaud, A.; diVolo, M.; Zerlaut, Y.; Perrinet, L.; Destexhe, A.; Chavane, F.

10.1101/372763 — neuroscience — Posted on 2018-09-14

1445 WNT4 and WNT3A activate cell autonomous Wnt signaling independent of secretion

Rao, D. M.; Ferguson, R. L.; Yamamoto, T. M.; Bitler, B. G.; Sikora, M. J.

10.1101/333906 — cell biology — Posted on 2018-09-14

1446 Exploring the Impact of Analysis Software on Task fMRI Results

Bowring, A.; Maumet, C.; Nichols, T.

10.1101/285585 — neuroscience — Posted on 2018-09-14

1447 CD95/Fas ligand mRNA is toxic to cells

Putzbach, W.; Haluck-Kangas, A.; Gao, Q. Q.; Sarshad, A. A.; Bartom, E. T.; Stults, A. M.; Qadir, A. S.; Hafner, M.; Peter, M. E.

10.1101/330324 — cancer biology — Posted on 2018-09-14

1448 Multiple-kernel learning for genomic data mining and prediction

Wilson, C.; Li, K.; Kuan, P. F.; Wang, X.

10.1101/415950 — bioinformatics — Posted on 2018-09-14

1449 Humans strategically shift decision bias by flexibly adjusting sensory evidence accumulation in visual cortex

Kloosterman, N. A.; de Gee, J. W.; Werkle-Bergner, M.; Lindenberger, U.; Garrett, D. D.; Fahrenfort, J. J.

10.1101/229989 — neuroscience — Posted on 2018-09-14

1450 Positive memory specificity reduces adolescent vulnerability to depression

Askelund, A. D.; Schweizer, S.; Goodyer, I. M.; van Harmelen, A.-L.

10.1101/329409 — neuroscience — Posted on 2018-09-14

1451 Resolving the Full Spectrum of Human Genome Variation using Linked-Reads

Marks, P.; Garcia, S.; Martinez Barrio, A.; Belhocine, K.; Bernate, J.; Bharadwaj, R.; Bjornson, K.; Catalanotti, C.; Delaney, J.; Fehr, A.; Fiddes, I. T.; Galvin, B.; Heaton, H.; Herschleb, J.; Hindson, C.; Holt, E.; Jabara, C. B.; Jett, S.; Keivanfar, N.; Kyriazopoulou-Panagiotopoulou, S.; Lek, M.; Lin, B.; Lowe, A.; Mahamdallie, S.; Maheshwari, S.; Makarewicz, T.; Marshall, J.; Meschi, F.; O'keefe, C.; Ordonez, H.; Patel, P.; Price, A.; Royall, A.; Ruark, E.; Seal, S.; Schnall-Levin, M.; Shah, P.; Williams, S.; Wu, I.; Wei Xu, A.; Rahman, N.; MacArthur, D.; Church, D. M.

10.1101/230946 — genomics — Posted on 2018-09-14

1452 A cell-density dependent metabolic switch sensitizes breast cancer cells to ferroptosis

Panzilius, E.; Holstein, F.; Bannier-Helaouët, M.; von Toerne, C.; Koenig, A.-C.; Hauck, S. M.; Ganz, H. M.; Friedmann Angeli, J. P.; Conrad, M.; Scheel, C. H.

10.1101/417949 — cancer biology — Posted on 2018-09-14

1453 Active sampling during visual search is modulated by the cardiac cycle

Galvez-Pol, A.; McConnell, R.; Kilner, J.

10.1101/405902 — neuroscience — Posted on 2018-09-14

1454 Endothelial cells form transient Notch-dependent NO-containing cystic structures during zebrafish cerebrovascular development

Kugler, E.; Chhabria, K.; Daetwyler, S.; Huisken, J.; Plant, K.; Savage, A.; Wilkinson, R. N.; Armitage, P.; Chico, T. J.

10.1101/416206 — developmental biology — Posted on 2018-09-14

1455 Improved immunofluorescence staining protocol for STED nanoscopy of Plasmodium-infected red blood cells

Mehnert, A.-K.; Guizetti, J.

10.1101/416776 — cell biology — Posted on 2018-09-14

1456 foxc1a and foxc1b differentially regulate angiogenesis from arteries and veins by modulating Vascular Endothelial Growth Factor signalling

Jiang, Z.; Forey, T.; Savage, A. M.; Loose, M. W.; Chico, T. J.; van Eeden, F. J.; Wilkinson, R. N.

10.1101/417931 — developmental biology — Posted on 2018-09-14

1457 Akt kinases are required for efficient feeding by macropinocytosis in Dictyostelium

Williams, T. D.; Paschke, P.; Peak-Chew, S.-Y.; Kay, R. R.

10.1101/417923 — cell biology — Posted on 2018-09-14

1458 Membrane capacitance recordings resolve dynamics and complexity of receptor-mediated endocytosis in Wnt signalling

Bandmann, V.; Mirsanaye, A. S.; Schaefer, J.; Thiel, G.; Holstein, T. W.; Mikosch-Wersching, M.

10.1101/417733 — cell biology — Posted on 2018-09-14

1459 Intrinsically aggregation-prone proteins form amyloid-like aggregates and contribute to tissue aging in C. elegans

Huang, C.; Wagner-Valladolid, S.; Stephens, A. D.; Jung, R.; Poudel, C.; Sinnige, T.; Lechler, M. C.; Schlörit, N.; Laine, R. F.; Michel, C. H.; Vendruscolo, M. M.; Kaminski, C. F.; Kaminski Schierle, G. S.; David, D. C.

10.1101/417873 — cell biology — Posted on 2018-09-14

1460 Investigating the conformational response of the Sortilin receptor upon binding endogenous peptide- and protein ligands by HDX-MS

Trabjerg, E.; Abu-Asad, N.; Wan, Z.; Kartberg, F.; Christensen, S.; Rand, K. D.

10.1101/415620 — biophysics — Posted on 2018-09-14

1461 Functional composition rather than species richness drive carbon gain and allocation in experimental grasslands

Gleixner, G.; Roscher, C.; Karlowsky, S.; Milcu, A.; Gessler, A.; Bachmann, D.; Jesch, A.; Lange, M.; Mellado-Vazquez, P.; Strecker, T.; Landais, D.; Ravel, O.; Buchmann, N.; Roy, J.

10.1101/418301 — ecology — Posted on 2018-09-14

1462 Connexin 43 plays an important role in the transformation of human cholangiocytes upon stimulation with Clonochis sinensis excretory-secretory protein and N-nitrosodimethylamine

Kim, E.-M.; HONG, S.-T.; Bae, Y. M.; Choi, M.-H.

10.1101/418350 — cancer biology — Posted on 2018-09-14

1463 Plant leaf tooth feature extraction

Wang, H.; Tian, D.; Li, C.; Tian, Y.; Zhou, H.

10.1101/418293 — bioinformatics — Posted on 2018-09-14

1464 The Synergistic Effect of Antioxidant Interaction between Luteolin and Chlorogenic Acid in Lonicera japonica

Hsieh, M.-H.; Hsieh, M.-j.; Wu, C.-R.; Peng, W.-H.; Hsieh, M.-T.; Hsieh, C.-C.

10.1101/418319 — biochemistry — Posted on 2018-09-14

1465 A single test approach for accurate and sensitive detection and taxonomic characterization of Trypanosomes by comprehensive analysis of ITS1 amplicons

Gaithuma, A. K.; Yamagishi, J.; Martinelli, A.; Hayashida, K.; Kawai, N.; Marsela, M.; Sugimoto, C.

10.1101/418343 — epidemiology — Posted on 2018-09-14

1466 Automatic interpretation of otoliths using deep learning

Moen, E.; Handegard, N. O.; Allken, V. S. D.; Albert, O. T.; Harbitz, A.; malde, K.

10.1101/418285 — ecology — Posted on 2018-09-14

1467 On simulating cold stunned turtle strandings on Cape Cod

Liu, X.; Manning, J.; Prescott, R.; Zou, H.; Faherty, M.

10.1101/418335 — ecology — Posted on 2018-09-14

1468 T vector velocity: A new ECG biomarker for identifying drug effects on cardiac ventricular repolarization

Bystricky, W.; Maier, C.; Gintant, G.; Bergau, D.; Kamradt, K.; Welsh, P.; Carter, D.

10.1101/418277 — pharmacology and toxicology — Posted on 2018-09-14

1469 Biofilm thickness matters: Deterministic assembly of different functions and communities in nitrifying biofilms

Suarez, C.; Piculell, M.; Modin, O.; Langenheder, S.; Persson, F.; Hermansson, M.

10.1101/416701 — microbiology — Posted on 2018-09-13

1470 Warm Temperatures, Cool Sponges: The Effect of Increased Temperatures on the Antarctic Sponge Isodictya sp.

Gonzalez-Aravena, M.; Kenny, N. J.; Osorio, M.; Font, A.; Riesgo, A.; Cardenas, C.

10.1101/416677 — genomics — Posted on 2018-09-13

1471 VEP-G2P: A Tool for Efficient, Flexible and Scalable Diagnostic Filtering of Genomic Variants

Thormann, A.; Halachev, M.; McLaren, W.; Moore, D. J.; Svinti, V.; Campbell, A.; Kerr, S. M.; Hunt, S.; Dunlop, M. G.; Hurles, M. E.; Wright, C. F.; Firth, H. V.; Cunningham, F.; FitzPatrick, D.

10.1101/416552 — genetics — Posted on 2018-09-13

1472 Predicting mRNA abundance directly from genomic sequence using deep convolutional neural networks

Agarwal, V.; Shendure, J.

10.1101/416685 — genomics — Posted on 2018-09-13

1473 The landscape of somatic mutation in normal colorectal epithelial cells

Lee-Six, H.; Ellis, P.; Osborne, R. J.; Sanders, M. A.; Moore, L.; Georgakopoulos, N.; Torrente, F.; Noorani, A.; Goddard, M.; Robinson, P.; Coorens, T. H. H.; O'Neill, L.; Alder, C.; Wang, J.; Fitzgerald, R. C.; Zilbauer, M.; Coleman, N.; Saeb-Parsy, K.; Martincorena, I.; Campbell, P. J.; Stratton, M. R.

10.1101/416800 — cancer biology — Posted on 2018-09-13

1474 An adaptive stress-induced tRNA depletion response mediates codon-based gene repression and growth suppression

Huh, D.; Passarelli, M. C.; Fish, L.; Molina, H.; McMillan, E. A.; Goodarzi, H.; Tavazoie, S. F.

10.1101/416727 — molecular biology — Posted on 2018-09-13

1475 Human Bone Marrow Assessment by Single Cell RNA Sequencing, Mass Cytometry and Flow Cytometry

Oetjen, K. A.; Lindblad, K. E.; Goswami, M.; Gui, G.; Dagur, P. K.; Lai, C.; Dillon, L. W.; McCoy, J. P.; Hourigan, C. S.

10.1101/416750 — immunology — Posted on 2018-09-13

1476 CRISPRpic: Fast and precise analysis for CRISPR-induced mutations via prefixed index counting

Cho, S. W.; Lee, H.; Chang, H. Y.; Ji, H. P.

10.1101/416768 — bioinformatics — Posted on 2018-09-13

1477 RNAseq dataset describing transcriptional changes in cervical sensory ganglia after bilateral pyramidotomy and forelimb intramuscular gene therapy with AAV1 encoding human neurotrophin-3

Kathe, C.; Moon, L. D. F.

10.1101/415877 — neuroscience — Posted on 2018-09-13

1478 A novel innate lymphoid cell delineates childhood autoimmune arthritis

Velasco-Herrera, M. D. C.; Young, M. D.; Braga, F. A. V.; Rosser, E. C.; Miranda, E.; Marshall, L.; Wilkinson, M. G. L.; Mamanova, L.; Efremova, M.; Vento-Tormo, R.; Cagan, A.; Rhijn, I. V.; Moody, D. B.; Al-Mossawi, H.; Teichmann, S.; Flanagan, A. M.; Wedderburn, L.; Behjati, S.; Brown, C. C.

10.1101/416784 — immunology — Posted on 2018-09-13

1479 A comprehensive analysis of RNA sequences reveals macroscopic somatic clonal expansion across normal tissues

Yizhak, K.; Aguet, F.; Kim, J.; Hess, J.; Kubler, K.; Grimsby, J.; Frazer, R.; Zhang, H.; Haradhvala, N.; Rosebrock, D.; Livitz, D.; Li, X.; Arich-Landkof, E.; Shoresh, N.; Stewart, C.; Segre, A.; Branton, P.; Polak, P.; Ardlie, K.; Getz, G.

10.1101/416339 — genomics — Posted on 2018-09-13

1480 The C. elegans SMOC-1 protein acts cell non-autonomously to promote bone morphogenetic protein signaling

DeGroot, M. S.; Shi, H.; Eastman, A.; McKillop, A. N.; Liu, J.

10.1101/416669 — genetics — Posted on 2018-09-13

1481 Searching for rewards like a child means less generalization and more directed exploration

Schulz, E.; Wu, C. M.; Ruggeri, A.; Meder, B.

10.1101/327593 — animal behavior and cognition — Posted on 2018-09-13

1482 Dating genomic variants and shared ancestry in population-scale sequencing data

Albers, P. K.; McVean, G.

10.1101/416610 — genomics — Posted on 2018-09-13

1483 Resource: Scalable whole genome sequencing of 40,000 single cells identifies stochastic aneuploidies, genome replication states and clonal repertoires

Laks, E.; Zahn, H.; Lai, D.; McPherson, A.; Steif, A.; Brimhall, J.; Biele, J.; Wang, B.; Masud, T.; Grewal, D.; Nielsen, C.; Leung, S.; Bojilova, V.; Smith, M.; Golovko, O.; Poon, S.; Eirew, P.; Kabeer, F.; Ruiz de Algara, T.; Lee, S. R.; Taghiyar, M. J.; Huebner, C.; Ngo, J.; Chan, T.; Vatrt-Watts, S.; Walters, P.; Abrar, N.; Chan, S.; Wiens, M.; Martin, L.; Scott, R. W.; Underhill, M. T.; Chavez, E.; Steidl, C.; Da Costa, D.; Ma, Y.; Coope, R. J. N.; Corbett, R.; Pleasance, S.; Moore, R.; Mungall, A. J.; CRUK IMAXT Consortium, ; Marra, M. A.; Hansen, C.; Shah, S.; Aparicio, S.

10.1101/411058 — genomics — Posted on 2018-09-13

1484 Cellular labelling favours unfolded proteins

Minde, D.-P.; Ramakrishna, M.; Lilley, K. S.

10.1101/274761 — cell biology — Posted on 2018-09-13

1485 Timing mechanism of sexually dimorphic nervous system differentiation

Pereira, L.; Aeschimann, F.; Wang, C.; Lawson, H.; Serrano-Saiz, E.; Portman, D. S.; Grosshans, H.; Hobert, O.

10.1101/416735 — neuroscience — Posted on 2018-09-13

1486 Microbial metabolite deoxycholic acid controls Clostridium perfringens-induced chicken necrotic enteritis through attenuating cyclooxygenase signaling

Wang, H.; Latorre, J. D.; Bansal, M.; Abraha, M.; Al-Rubaye, B.; tellez, G.; Hargis, B. M.; Sun, X.

10.1101/416107 — microbiology — Posted on 2018-09-13

1487 Laboratory surrogate markers of residual HIV replication among distinct groups of individuals under antiretroviral therapy

Diaz, R. S.; Giron, L. B.; Tenore, S. B.; Janini, L.; Sucupira, M. C.

10.1101/416099 — evolutionary biology — Posted on 2018-09-13

1488 Freshwater Adaptation at the Molecular Scale in the Unique Sponges of Lake Baikal

Kenny, N. J.; Plese, B.; Riesgo, A.; Itskovich, V. B.

10.1101/416230 — zoology — Posted on 2018-09-13

1489 The biochemical properties of a novel paraoxonase-like enzyme in Trichoderma atroviride strain T23 involved in the degradation of 2,2-dichlorovinyl dimethyl phosphate

Sun, J.; Yuan, X.; Li, Y.; Wang, X.; chen, J.

10.1101/416081 — microbiology — Posted on 2018-09-13

1490 Bacterial outer membrane vesicles provide an alternative pathway for trafficking of type III secreted effectors into epithelial cells

Sirisaengtaksin, N.; O'Donoghue, E. J.; Jabbari, S.; Roe, A. J.; Krachler, A. M.

10.1101/415794 — microbiology — Posted on 2018-09-13

1491 Coupled single-cell CRISPR screening and epigenomic profiling reveals causal gene regulatory networks

Rubin, A. J.; Parker, K. R.; Satpathy, A. T.; Qi, Y.; Wu, B.; Ong, A. J.; Mumbach, M. R.; Ji, A. L.; Kim, D. S.; Cho, S. W.; Zarnegar, B. J.; Greenleaf, W. J.; Chang, H. Y.; Khavari, P. A.

10.1101/414870 — genomics — Posted on 2018-09-13

1492 Multiple-kernel learning for genomic data mining and prediction

Wilson, C.; Wang, X.; Li, K.; Kuan, P. F.

10.1101/415950 — bioinformatics — Posted on 2018-09-13

1493 Gene Regulatory Cross Networks: Inferring Gene Level Cell-to-Cell Communications of Immune Cells

Altay, G.; Peters, B.

10.1101/415943 — bioinformatics — Posted on 2018-09-13

1494 KPGminer: A tool for retrieving pathway genes from KEGG pathway database

Azad, A. K. M.

10.1101/416131 — bioinformatics — Posted on 2018-09-13

1495 Specific metabolic signatures of fish exposed to cyanobacterial blooms

Sotton, B.; Paris, A.; Le Manach, S.; Blond, A.; Duval, C.; Qiao, Q.; Catherine, A.; Combes, A.; Pichon, V.; Bernard, C.; Marie, B.

10.1101/416297 — ecology — Posted on 2018-09-13

1496 FirstSV: Fast and Accurate Approach of Structural Variations Detection for Short DNA fragments

Tang, Y.; Shen, J.; Zuo, Q.; Wang, R.; Li, X.

10.1101/415059 — bioinformatics — Posted on 2018-09-13

1497 uORF-Tools - Workflow for the determination of translation-regulatory upstream open reading frames

Scholz, A.; Eggenhofer, F.; Gelhausen, R.; Grüning, B.; Zarnack, K.; Brüne, B.; Backofen, R.; Schmid, T.

10.1101/415018 — bioinformatics — Posted on 2018-09-13

1498 The Plant PTM Viewer, a central resource exploring plant protein modifications. From site-seeing to protein function.

Willems, P.; Horne, A.; Goormachtig, S.; De Smet, I.; Botzki, A.; Van Breusegem, F.; Gevaert, K.

10.1101/415802 — systems biology — Posted on 2018-09-13

1499 RstA is a Major Regulator of Clostridioides difficile Toxin Production and Motility

Edwards, A. N.; Anjuwon-Foster, B. R.; McBride, S. M.

10.1101/416115 — microbiology — Posted on 2018-09-13

1500 Response of pneumococcus to changes in temperature and oxygen varies by serotype, lineage, and site of isolation

Tothpal, A.; Desobry, K.; Wyllie, A. L.; Weinberger, D. M.

10.1101/416040 — microbiology — Posted on 2018-09-13

1501 Rapid development of an infant-derived HIV-1 broadly neutralizing antibody lineage

Simonich, C. A.; Doepker, L.; Ralph, D.; Williams, J. A.; Dhar, A.; Yaffe, Z.; Gentles, L.; Small, C. T.; Oliver, B.; Vigdorovich, V.; Mangala Prasad, V.; Nduati, R.; Sather, D. N.; Lee, K. K.; Matsen, F. A.; Overbaugh, J.

10.1101/416032 — immunology — Posted on 2018-09-13

1502 Inner Asian maternal genetic origin of the Avar period nomadic elite in the 7th century AD Carpathian Basin

Csaky, V.; Gerber, D.; Koncz, I.; Csiky, G.; Mende, B. G.; Marcsik, A.; Molnar, E.; Palfi, G.; Gulyas, A.; Kovacsoczy, B.; Lezsak, G. M.; Lorinczy, G.; Szecsenyi-Nagy, A.; Vida, T.

10.1101/415760 — genomics — Posted on 2018-09-13

1503 Hierarchical Reconstruction of High-Resolution 3D Models of Human Chromosomes

Trieu, T.; Oluwadare, O.; Cheng, J.

10.1101/415810 — bioinformatics — Posted on 2018-09-13

1504 Agricultural intensification reduces microbial network complexity and the abundance of keystone taxa in roots

Banerjee, S.; Walder, F.; Buchi, L.; Meyer, M.; Held, A. Y.; Gattinger, A.; Keller, T.; Charles, R.; van der Heijden, M. G.

10.1101/416271 — microbiology — Posted on 2018-09-13

1505 Predicting CD4 T-cell epitopes based on antigen cleavage, MHCII presentation, and TCR recognition

Schneidman-Duhovny, D.; Khuri, N.; Dong, G. Q.; Winter, M. B.; Shifrut, E.; Friedman, N.; Craik, C. S.; Pratt, K. P.; Paz, P.; Aswad, F.; Sali, A.

10.1101/415661 — bioinformatics — Posted on 2018-09-13

1506 Tensorflow Based Deep Learning Model and Snakemake Workflow for Peptide-Protein Binding Predictions

Altay, G.

10.1101/410928 — bioinformatics — Posted on 2018-09-13

1507 Identification and Quantification of Paclitaxel and its Metabolites in Human Meconium from Newborns with Gestational Chemotherapeutic Exposure

Cardonick, E.; Broadrup, R.; Xu, P.; Doan, M. T.; Jiang, H.; Snyder, N.

10.1101/306274 — pharmacology and toxicology — Posted on 2018-09-13

1508 Energy expenditure and body composition changes after an isocaloric ketogenic diet in overweight and obese men: a secondary analysis of energy expenditure and physical activity

Friedman, M. I.; Appel, S.

10.1101/383752 — physiology — Posted on 2018-09-13

1509 Co-SELECT reveals sequence non-specific contribution of DNA shape to transcription factor binding in vitro

Pal, S.; Hoinka, J.; Przytycka, T. M.

10.1101/413922 — bioinformatics — Posted on 2018-09-13

1510 Cortical Mechanisms for Reaches Versus Saccades: Progression of Effector-Specificity Through Target Memory to Movement Planning and Execution

Cappadocia, D. C.; Monaco, S.; Chen, Y.; Crawford, J. D.

10.1101/415562 — neuroscience — Posted on 2018-09-13

1511 Arginine culture turns on the elusive nitrogen starvation signal during robust phototrophic growth in Chlamydomonas

Munz, J.; Xiong, Y.; Kariyawasam, T.; Shelley, N.; Lee, J.; Hong, R. H.; Kim, J. Y. H.; Sung, Y. J.; Seo, S.-B.; Sim, S. J.; Jin, E.; Lee, J.-H.

10.1101/416594 — plant biology — Posted on 2018-09-13

1512 Fatigue and cognitive performance change in MS: multifactorial with disparate influences

Hu, M.; Muhlert, N.; Robertson, N.; Winter, M.

10.1101/414011 — neuroscience — Posted on 2018-09-13

1513 A transgenic mutant mouse line accompanied by the complete deletion of interleukin-33 showed insulin and leptin resistances

Watanabe, T.; Takeuchi, T.; Kubota, N.; Wainai, T.; Kataoka, K.; Nakaya, T.; Sugimoto, A.; Sato, T.; Ohira, H.; Tsujino, I.; Kumagai, K.; Kubota, T.; Hasegawa, C.; Tokuyama, K.; Ueki, K.; Yamauchi, T.; Mishina, M.; Kadowaki, T.

10.1101/416529 — molecular biology — Posted on 2018-09-13

1514 Drug-induced increase in lysobisphosphatidic acid reduces the cholesterol overload in Niemann-Pick type C cells and mice

Moreau, D.; Vacca, F.; Vossio, S.; Scott, C. C.; Colaco, A.; Paz Montoya, J.; Ferguson, C.; Moniatte, M.; Parton, R. G.; Platt, F. M.; Gruenberg, J.

10.1101/416479 — cell biology — Posted on 2018-09-13

1515 Design and Analysis of a Whole Body Non-Contact Electromagnetic Stimulation Device with Field Modulation

Makarov, S. N.; Bogdanov, G.; Noetscher, G. M.; Appleyard, W.; Ludwig, R.; Joutsa, J.; Deng, Z.-D.

10.1101/416065 — bioengineering — Posted on 2018-09-13

1516 Reactivated spatial context guides episodic recall

Herweg, N. A.; Sharan, A. D.; Sperling, M. R.; Brandt, A.; Schulze-Bonhage, A.; Kahana, M. J.

10.1101/399972 — neuroscience — Posted on 2018-09-13

Wiegand, I.; Sander, M. C.

10.1101/413260 — neuroscience — Posted on 2018-09-13

1518 Interplay scenarios between CatSper and CaV channels in sea urchin sperm flagellum signaling cascades triggered by egg peptides: a mathematical modelling approach

Priego-Espinosa, D. A.; Darszon, A.; Guerrero, A.; Gonzalez-Cota, A. L.; Nishigaki, T.; Martinez-Mekler, G.; Carneiro, J.

10.1101/415687 — developmental biology — Posted on 2018-09-13

1519 Stem cell mitotic drive ensures asymmetric epigenetic inheritance

Ranjan, R.; Snedeker, J.; Chen, X.

10.1101/416446 — developmental biology — Posted on 2018-09-13

1520 Molecular organization of integrin-based adhesion complexes in mouse Embryonic Stem Cells

Xia, S.; Yim, E. K. F.; Kanchanawong, P.

10.1101/416503 — cell biology — Posted on 2018-09-13

1521 The AP-1 complex regulates AXL expression and determines sensitivity to PI3Kα inhibition in esophagus and head and neck squamous cell carcinoma

Bdarny, M.; Prasad, M.; Balaban, N.; Joshua, B.-Z.; Bahat Dinur, A.; Grenman, R.; Cohen, L.; Elkabets, M.

10.1101/415752 — cancer biology — Posted on 2018-09-13

1522 Mapping the Substrate Recognition Pathway in Cytochrome P450

Ahalawat, N.; Mondal, J.

10.1101/416305 — biophysics — Posted on 2018-09-13

1523 A molecular model of the surface-assisted protein aggregation process

Pan, Y.; Banerjee, S.; Zagorski, K.; Shlyakhtenko, L. S.; Kolomeisky, A. B.; Lyubchenko, Y. L.

10.1101/415703 — biophysics — Posted on 2018-09-13

1524 A yeast model of calcium-responsive transactivator protein (CREST) proteinopathy shows that PBP1/ATXN2 modifies CREST aggregation and toxicity.

Park, S.; Park, S.-K.; Liebman, S. W.

10.1101/415927 — molecular biology — Posted on 2018-09-13

1525 Endothelial cells form transient Notch-dependent NO-containing cystic structures during zebrafish cerebrovascular development

Chico, T. J.; Kugler, E.; Chhabria, K.; Daetwyler, S.; Huisken, J.; Plant, K.; Savage, A.; Wilkinson, R. N.; Armitage, P.

10.1101/416206 — developmental biology — Posted on 2018-09-13

1526 Tension on kinetochore substrates is insufficient to prevent Aurora-triggered detachment

de Regt, A. K.; Asbury, C. L.; Biggins, S.

10.1101/415992 — cell biology — Posted on 2018-09-13

1527 TDP-43 is more toxic in respiring than in non-respiring cells, but respiration is not absolutely required for TDP-43 toxicity.

Park, S.-K.; Park, S.; Liebman, S. W.

10.1101/415893 — cell biology — Posted on 2018-09-13

1528 Subcellular localization of microcystin in the liver and the gonad of medaka fish acutely exposed to microcystin-LR

Qiao, Q.; Djediat, C.; Huet, H.; Duval, C.; Le Manach, S.; Bernard, C.; Edery, M.; Marie, B.

10.1101/416255 — cell biology — Posted on 2018-09-13

1529 The anaphase-promoting complex regulates the degradation of the inner nuclear membrane protein Mps3 in budding yeast

Koch, B.; Jin, H.; Tomko, R. J.; Yu, H.-G.

10.1101/415844 — cell biology — Posted on 2018-09-13

1530 Reduction of LOXL2-mediated H3K4 oxidation increases chromatin accessibility and promotes chemosensitivity of triple-negative breast cancer cells

Cebria-Costa, J. P.; Pascual-Reguant, L.; Gonzalez Perez, A.; Serra-Bardenys, G.; Querol, J.; Cosin, M.; Verde, G.; Aiese Cigliano, R.; Sanseverino, W.; Segura-Bayona, S.; Iturbide, A.; Andreu, D.; Nuciforo, P.; Bernado Morales, C.; Rodilla, V.; Arribas, J.; Yelamos, J.; Garcia de Herreros, A.; Stracker, T. H.; Peiro, S.

10.1101/416495 — cancer biology — Posted on 2018-09-13

1531 A novel interaction between Gβγ and RNA polymerase II regulates cardiac fibrosis.

Khan, S. M.; Martin, R. D.; Bouazza, C.; Jones-Tabah, J.; Zhang, A.; MacKinnon, S.; Trieu, P.; Gora, S.; Clarke, P. B.; Tanny, J. C.; Hebert, T. E.

10.1101/415935 — biochemistry — Posted on 2018-09-13

1532 Classification and monomer-by-monomer annotation of suprachromosomal family 1 alpha satellite higher-order repeats in hg38 human genome assembly

Uralsky, L.; Shepelev, V. A.; Alexandrov, A. A.; Yurov, Y. B.; Rogaev, E. I.; Alexandrov, I. A.

10.1101/408674 — bioinformatics — Posted on 2018-09-13

1533 A synthetic biology platform for the reconstitution and mechanistic dissection of LINC complex assembly

Majumder, S.; Willey, P. T.; Denies, M. S.; Liu, A. P.; Luxton, G. G.

10.1101/415745 — synthetic biology — Posted on 2018-09-13

1534 Targetable genetic alterations of TCF4 (E2-2) drive immunoglobulin expression in the activated B-cell subtype of diffuse large B-cell lymphoma

Jain, N.; Hartert, K.; Tadros, S.; Fiskus, W.; Havranek, O.; Ma, M.-C. J.; Bouska, A.; Heavican, T.; Kumar, D.; Deng, Q.; Moore, D.; Pak, C.; Liu, C. L.; Gentles, A.; Hartmann, E.; Kridel, R.; Ekstrom-Smedby, K.; Juliusson, G.; Rosenquist, R.; Gascoyne, R.; Rosenwald, A.; Giancotti, F.; Neelapu, S.; Westin, J.; Vose, J.; Lunning, M.; Greiner, T.; Rodig, S.; Iqbal, J.; Alizadeh, A.; Davis, R. E.; Bhalla, K.; Green, M.

10.1101/170605 — genomics — Posted on 2018-09-13

1535 Identification of a Distinct Metabolomic Subtype of Sporadic ALS Patients

Gross, S.; Chen, Q.; Sandhu, D.; Konrad, C.; Roychoudhury, D.; Schwartz, B. I.; Cheng, R. R.; Bredvik, K.; Kawamata, H.; Calder, E. L.; Studer, L.; Fischer, S. M.; Manfredi, G.

10.1101/416396 — neuroscience — Posted on 2018-09-13

1536 Identification of novel circadian transcripts in the zebrafish retina

Ramasamy, S.; Sharma, S.; Iyengar, B. R.; Vellarikkal, S. K.; Sivasubbu, S.; Maiti, S.; Pillai, B.

10.1101/416222 — neuroscience — Posted on 2018-09-13

1537 In vivo assay of cortical microcircuitry in frontotemporal dementia: a platform for experimental medicine studies

Shaw, A. D.; Hughes, L. E.; Moran, R. J.; Coyle-Gilchrist, I.; Rittman, T.; Rowe, J. B.

10.1101/416388 — neuroscience — Posted on 2018-09-13

1538 Novel childhood experience suggests eccentricity drives organization of human visual cortex

Gomez, J.; Barnett, M.; Grill-Spector, K.

10.1101/415729 — neuroscience — Posted on 2018-09-13

1539 Glutamate spillover in C. elegans triggers repetitive behavior through presynaptic activation of MGL-2/mGluR5

Katz, M.; Corson, F.; Keil, W.; Singhal, A.; Bae, A.; Lu, Y.; Liang, Y.; Shaham, S.

10.1101/415828 — neuroscience — Posted on 2018-09-13

1540 Cross-modal restoration of juvenile-like ocular dominance plasticity after increasing GABAergic inhibition

Teichert, M.; Isstas, M.; Wieske, F.; Winter, C.; Bolz, J.

10.1101/416248 — neuroscience — Posted on 2018-09-13

1541 Cre-dependent optogenetic transgenic mice without early age-related hearing loss

Lyngholm, D.; Sakata, S.

10.1101/416164 — neuroscience — Posted on 2018-09-13

1542 Cross-decoding reveals shared brain activity patterns between saccadic eye-movements and semantic processing of implicitly spatial words

Ostarek, M.; van Paridon, J.; Huettig, F.

10.1101/415596 — neuroscience — Posted on 2018-09-13

1543 Phage Mediate Bacterial Self Recognition

Song, S.; Guo, Y.; Kim, J.-S.; Wang, X.; Wood, T. K.

10.1101/413146 — molecular biology — Posted on 2018-09-13

1544 Anatomical predictors of successful prism adaptation in chronic visual neglect

Lunven, M.; Rode, G.; Bourlon, C.; Duret, C.; Migliaccio, R.; Chevrillon, E.; Thiebaut de Schotten, M.; Bartolomeo, P.

10.1101/144956 — neuroscience — Posted on 2018-09-13

1545 PhenoMeNal: Processing and analysis of Metabolomics data in the Cloud

Peters, K.; Bradbury, J.; Bergmann, S.; Capuccini, M.; Cascante, M.; de Atauri, P.; Ebbels, T.; Foguet, C.; Glen, R.; Gonzalez-Beltran, A.; Guenther, U.; Handakas, E.; Hankemeier, T.; Herman, S.; Haug, K.; Holub, P.; Izzo, M.; Jacob, D.; Johnson, D.; Jourdan, F.; Kale, N.; Karaman, I.; Khalili, B.; Emami Khoonsari, P.; Kultima, K.; Lampa, S.; Larsson, A.; Ludwig, C.; Moreno, P.; Neumann, S.; Novella, J. A.; O'Donovan, C.; Pearce, J. T.; Peluso, A.; Pireddu, L.; Piras, M. E.; Reed, M. A.; Rocca-Serra, P.; Roger, P.; Rosato, A.; Rueedi, R.; Ruttkies, C.; Sadawi, N.; Salek, R.; Sansone, S.-A.; S

10.1101/409151 — bioinformatics — Posted on 2018-09-13

1546 Measuring narrative engagement: The heart tells the story

Richardson, D. C.; Griffin, N. K.; Zaki, L.; Stephenson, A.; Yan, J.; Curry, T.; Noble, R.; Hogan, J.; Skipper, J. I.; Devlin, J. T.

10.1101/351148 — neuroscience — Posted on 2018-09-13

1547 Wheat avenin-like protein and its significant Fusarium Head Blight resistant functions

Zhang, Y.; Cao, X.; Juhasz, A.; Islam, S.; Qi, P.; She, M.; Zhu, Z.; Hu, X.; Yu, Z.; Wylie, S.; Dowla, M.; Chen, X.; Yang, R.; Xia, X.; Zhang, J.; Zhao, Y.; Shi, N.; Dell, B.; He, Z.; Ma, W.

10.1101/406694 — molecular biology — Posted on 2018-09-13

1548 Sam50-Mic19-Mic60 axis Determines Mitochondrial Cristae Architecture by Mediating Mitochondrial Outer and Inner Membrane Contact

Tang, J.; Zhang, K.; Dong, J.; Yan, C.; Chen, S.; Song, Z.

10.1101/345959 — cell biology — Posted on 2018-09-13

1549 Genetic studies of accelerometer-based sleep measures in 85,670 individuals yield new insights into human sleep behaviour

Jones, S. E.; van Hees, V. T.; Mazzotti, D. R.; Marques-Vidal, P.; Sabia, S.; van der Spek, A.; Dashti, H. S.; Engmann, J.; Kocevska, D.; Tyrrell, J.; Beaumont, R. N.; Hillsdon, M.; Ruth, K. S.; Tuke, M. A.; Yaghootkar, H.; Sharp, S.; Ji, Y.; Harrison, J. W.; Freathy, R. M.; Murray, A.; Luik, A. I.; Amin, N.; Lane, J. M.; Saxena, R.; Rutter, M. K.; Tiemeier, H.; Kutalik, Z.; Kumari, M.; Frayling, T. M.; Weedon, M. N.; Gehrman, P.; Wood, A. R.

10.1101/303925 — genetics — Posted on 2018-09-13

1550 Genome-wide association analyses of chronotype in 697,828 individuals provides new insights into circadian rhythms in humans and links to disease

Jones, S. E.; Lane, J. M.; Wood, A. R.; van Hees, V. T.; Tyrrell, J.; Beaumont, R. N.; Jeffries, A. R.; Dashti, H. S.; Hillsdon, M.; Ruth, K. S.; Tuke, M. A.; Yagohootkar, H.; Sharp, S. A.; Ji, Y.; Harrison, J. W.; Thompson, W. D.; Dawes, A.; Byrne, E. M.; Tiemeier, H.; Allebrandt, K. V.; Bowden, J.; Ray, D. W.; Freathy, R. M.; Murray, A.; Mazzotti, D. R.; Gehrman, P. R.; 23andMe Research Team, ; Lawlor, D. A.; Frayling, T. M.; Rutter, M. K.; Hinds, D. A.; Saxena, R.; Weedon, M. N.

10.1101/303941 — genetics — Posted on 2018-09-13

1551 Implementation of a practical and effective control program for Taenia solium in the Banke District of Nepal

Poudel, I.; Sar, K.; Sebedi, S.; Kumar Singh, D.; Kushwaha, P.; Colston, A.; Gauci, C.; Donadeu, M.; Lightowlers, M.

10.1101/416370 — immunology — Posted on 2018-09-13

1552 Genome-wide association studies of impulsive personality traits (BIS-11 and UPPSP) and drug experimentation in up to 22,861 adult research participants

Sanchez-Roige, S.; Fontanillas, P.; Elson, S. L.; the 23andMe Research Team, ; Gray, J. C.; de Wit, H.; MacKillop, J.; Palmer, A. A.

10.1101/414854 — genetics — Posted on 2018-09-13

1553 INTERFERON ALPHA AND KINASE INHIBITOR NILOTINIB INCREASE CELL ADHESION AND TUNNELING NANOTUBES IN CML

Omsland, M.; Andresen, V.; del Pilar Ayuda Duran, M.; Gullaksen, S. E.; Hovland, R.; Enserink, J. M.; Gjertsen, B. T.

10.1101/297838 — cell biology — Posted on 2018-09-13

1554 High prevalence of neurocognitive disorders observed among adult people living with HIV/AIDS in Southern Ethiopia: a cross-sectional study.

debalkie, m.; Bekele, M.; Workineh, Y.; yihune, M.

10.1101/416362 — neuroscience — Posted on 2018-09-13

1555 Effects of exposure to sublethal concentrations of methoxyfenozide on honey bee colony activity and thermoregulation

Meikle, W. G.; Corby-Harris, V.; Carroll, M. J.; Weiss, M.; Snyder, L. A.; Meador, C. A. D.; Beren, E.; Brown, N.

10.1101/416354 — zoology — Posted on 2018-09-13

1556 Effect of de novo transcriptome assembly on transcript quantification

Hsieh, P.-H.; Oyang, Y.-J.; CHEN, C.-Y.

10.1101/380998 — bioinformatics — Posted on 2018-09-13

1557 scMerge: Integration of multiple single-cell transcriptomics datasets leveraging stable expression and pseudo-replication

Lin, Y.; Ghazanfar, S.; Wang, K.; Gagnon-Bartsch, J. A.; Lo, K. K.; Su, X.; Han, Z.-G.; Ormerod, J. T.; Speed, T. P.; Yang, P.; Yang, J. Y. H.

10.1101/393280 — bioinformatics — Posted on 2018-09-12

1558 Community origins and regional differences highlight risk of plasmid-mediated fluoroquinolone resistant Enterobacteriaceae infections in children

Logan, L. K.; Medernach, R. L.; Rispens, J. R.; Marshall, S. H.; Hujer, A. M.; Domitrovic, T. N.; Rudin, S. D.; Zheng, X.; Qureshi, N. K.; Konda, S.; Hayden, M.; Weinstein, R. A.; Bonomo, R. A.

10.1101/301457 — epidemiology — Posted on 2018-09-12

1559 Habitat heterogeneity drives scale-dependent biodiversity loss in a temperate marine ecosystem

Starko, S.; Bailey, L.; Creviston, E.; James, K.; Warren, A.; Neufeld, C. J.

10.1101/337972 — ecology — Posted on 2018-09-12

1560 Preliminary prediction of the potential distribution and consequences of Haemaphysalis longicornis (Ixodida: Ixodidae) in the United States and North America, using a simple rule-based climate envelope model

Magori, K.

10.1101/389940 — ecology — Posted on 2018-09-12

1561 Identifying genetic determinants of complex phenotypes from whole genome sequence data and very small training sets

Long, G. S.; Hussen, M.; Dench, J.; Aris-Brosou, S.

10.1101/181222 — bioinformatics — Posted on 2018-09-12

1562 Generalization guides human exploration in vast decision-spaces

Wu, C. M.; Schulz, E.; Speekenbrink, M.; Nelson, J. D.; Meder, B.

10.1101/171371 — animal behavior and cognition — Posted on 2018-09-12

1563 Stem cell receptor degradation by niche cells restricts signaling

Ladyzhets, S.; Inaba, M.

10.1101/414078 — developmental biology — Posted on 2018-09-12

1564 Pediatric Brainstem Encephalitis Outbreak Investigation with Metagenomic Next-Generation Sequencing

Leon, K. E.; Casas-Alba, D.; Ramesh, A.; Khan, L. M.; Launes, C.; Sample, H. A.; Zorn, K. C.; Vallero-Rello, A.; Langelier, C.; Munoz-Almagro, C.; DeRisi, J. L.; Wilson, M. R.

10.1101/414979 — microbiology — Posted on 2018-09-12

1565 Estimating the burden of α-thalassaemia in Thailand using a comprehensive prevalence database for Southeast Asia

Hockham, C.; Ekwattanakit, S.; Bhatt, S.; Penman, B. S.; Gupta, S.; Viprakasit, V.; Piel, F. B.

10.1101/412718 — epidemiology — Posted on 2018-09-12

1566 Modulation of actin polymerization affects nucleocytoplasmic transport in multiple forms of Amyotrophic Lateral Sclerosis

Giampetruzzi, A.; Danielson, E. W.; Jeon, M.; Gumina, V.; Boopathy, S.; Brown, R.; Landers, J.; Fallini, C.

10.1101/415901 — neuroscience — Posted on 2018-09-12

1567 Endothelial Cells Filopodia Participation In The Anastomosis Of CNS Capillaries

Marin-Padilla, M.; Howard, L.

10.1101/415307 — neuroscience — Posted on 2018-09-12

1568 Origin and recent expansion of an endogenous gammaretroviral lineage in canids

Halo, J. V.; Pendleton, A. L.; Jarosz, A. S.; Gifford, R. J.; Day, M. L.; Kidd, J.

10.1101/414607 — genomics — Posted on 2018-09-12

1569 Unsupervised learning of persistent and sequential activity

Pereira, U.; Brunel, N.

10.1101/414813 — neuroscience — Posted on 2018-09-12

1570 Superfolder mTurquoise2ox optimized for the bacterial periplasm allows high efficiency in vivo FRET of cell division antibiotic targets.

Meiresonne, N. Y.; Consoli, E.; Mertens, L. M.; Chertkova, A.; Goedhart, J.; den Blaauwen, T.

10.1101/415174 — microbiology — Posted on 2018-09-12

1571 Gene duplication accelerates the pace of protein gain and loss from plant organelles.

Costello, R.; Emms, D.; Kelly, S.

10.1101/415125 — evolutionary biology — Posted on 2018-09-12

1572 Detection of cell-type-specific risk-CpG sites in epigenome-wide association studies

Luo, X.; Yang, C.; Wei, Y.

10.1101/415109 — bioinformatics — Posted on 2018-09-12

1573 Bioinformatics workflows for genomic analysis of tumors from Patient Derived Xenografts (PDX): challenges and guidelines

Woo, X. Y.; Srivastava, A.; Graber, J. H.; Yadav, V.; Sarsani, V. K.; Simons, A.; Beane, G.; Grubb, S.; Ananda, G.; Liu, R.; Stafford, G.; Chuang, J. H.; Airhart, S. D.; Karuturi, R. K. M.; George, J.; Bult, C. J.

10.1101/414946 — bioinformatics — Posted on 2018-09-12

1574 Association of oxidative stress, telomere length, and frailty in an elder population

Martinez-Ezquerro, J. D.; Rodriguez-Castaneda, A.; Ortiz-Ramirez, M.; Sanchez-Garcia, S.; Rosas-Vargas, H.; Sanchez-Arenas, R.; Garcia-delaTorre, P.

10.1101/414680 — molecular biology — Posted on 2018-09-12

1575 Metagenomics Analyses of Cellulose and Volatile Fatty Acids Metabolism by Microorganisms in the Cow Rumen

Wang, L.; Jiang, X.; Xu, H.; Zhang, Y.

10.1101/414961 — microbiology — Posted on 2018-09-12

1576 Laboratory evolution reveals a two-dimensional rate-yield tradeoff in microbial metabolism

Cheng, C.; O'brien, E. J.; McCloskey, D.; Utrilla, J.; Olson, C.; LaCroix, R. A.; Sandberg, T. E.; Feist, A. M.; Palsson, B. O.; King, Z. A.

10.1101/414912 — microbiology — Posted on 2018-09-12

1577 A multidrug resistant clinical P. aeruginosa isolate in the MLST550 clonal complex: uncoupled quorum sensing modulates the interplay of virulence and resistance

Cao, H.; Xia, T.; Li, Y.; Xu, z.; Bougouffa, S.; Lo, Y. K.; Bajic, V. B.; Luo, H.; Woo, P. C. Y.; Yan, A.

10.1101/415000 — microbiology — Posted on 2018-09-12

1578 Identification and capsular serotype sequetyping of Streptococcus pneumoniae strains

Gonzales Siles, L.; Salva Serra, F.; Degerman, A.; Nordén, R.; Lindh, M.; Skovbjerg, S.; Moore, E. R.

10.1101/415422 — microbiology — Posted on 2018-09-12

1579 Synthetic Lethality of Wnt Pathway Activation and Asparaginase in Drug-Resistant Acute Leukemias

Hinze, L.; Pfirrmann, M.; Karim, S.; Degar, J.; McGuckin, C.; Vinjamur, D.; Sacher, J.; Stevenson, K.; Neuberg, D.; Bauer, D.; Wagner, F.; Stegmaier, K.; Gutierrez, A.

10.1101/415711 — cancer biology — Posted on 2018-09-12

1580 BNMCMC: a software for learning and visualizing Bayesian networks using MCMC methods

Azad, A. K. M.; Alyami, S. A.; Keith, J. M.

10.1101/414953 — systems biology — Posted on 2018-09-12

1581 Control of synaptic specificity by limiting promiscuous synapse formation

Xu, C.; Theisen, E.; Rumbaut, E.; Shum, B.; Peng, J.; Tarnogorska, D.; Borycz, J. A.; Tan, L.; Courgeon, M.; Meinertzhagen, I. A.; Pecot, M. Y.

10.1101/415695 — neuroscience — Posted on 2018-09-12

1582 Systematic analysis of the Myxococcus xanthus developmental gene regulatory network supports posttranslational regulation of FruA by C-signaling

Saha, S.; Patra, P.; Igoshin, O.; Kroos, L.

10.1101/415331 — molecular biology — Posted on 2018-09-12

1583 Methane-linked mechanisms of electron uptake from cathodes by Methanosarcina barkeri

Rowe, A.; Xu, S.; Gardel, E.; Bose, A.; Girguis, P.; Amend, J.; El-Naggar, M.

10.1101/415653 — microbiology — Posted on 2018-09-12

1584 Versican Proteolysis Predicts Immune Effector Infiltration And Post-Transplant Survival In Myeloma

Dhakal, B.; Pagenkopf, A.; Mushtaq, M. U.; Cunningham, A. M.; Flietner, E.; Morrow, Z.; Papadas, A.; Hope, C.; Leith, C.; Hematti, P.; Hari, P.; Callander, N. S.; Asimakopoulos, F.

10.1101/415638 — immunology — Posted on 2018-09-12

1585 Improved consistency in estimates of conditional false discovery rates increases power relative to both existing methods and parametric estimators

Liley, J.; Wallace, C.

10.1101/414326 — genomics — Posted on 2018-09-12

1586 DeepProteomics: Protein family classification using Shallow and Deep Networks

Vazhayil, A.; R, V.; KP, S.

10.1101/414631 — genomics — Posted on 2018-09-12

1587 Multiple QTL underlie milk phenotypes at the CSF2RB locus

Lopdell, T. J.; Tiplady, K.; Couldrey, C.; Johnson, T. J.; Keehan, M.; Davis, S. R.; Harris, B. L.; Spelman, R. J.; Snell, R. G.; Littlejohn, M. D.

10.1101/414821 — genomics — Posted on 2018-09-12

1588 Cul4-Ddb1 ubiquitin ligases facilitate DNA replication-coupled sister chromatid cohesion through regulation of cohesin acetyltransferase Esco2

Sun, H.; Zhang, J.; Zhang, J.; Li, Z.; Cao, Q.; Lou, H.

10.1101/414888 — genetics — Posted on 2018-09-12

1589 Effects of alternative blood sources on Wolbachia infected Aedes aegypti females within and across generations

Paris, V.; Cottingham, E.; Ross, P. A.; Axford, J. K.; Hoffmann, A. A.

10.1101/414441 — evolutionary biology — Posted on 2018-09-12

1590 Social insect colony size is correlated with rates of substitution and DNA repair gene evolution

Rubin, B. E.

10.1101/415570 — evolutionary biology — Posted on 2018-09-12

1591 Dioecy in plants: an evolutionary dead end? Insights from a population genomics study in the Silene genus

Muyle, A.; Martin, H.; Zemp, N.; Mollion, M.; Gallina, S.; Tavares, R.; Silva, A.; Bataillon, T.; Widmer, A.; Glemin, S.; Touzet, P.; Marais, G. A.

10.1101/414771 — evolutionary biology — Posted on 2018-09-12

1592 Fate Before Function: Specification of the Hair Follicle Niche Occurs Prior to its Formation and Is Progenitor Dependent

Mok, K. W.; Saxena, N.; Heitman, N.; Grisanti, L.; Srivastava, D.; Muraro, M.; Jacob, T.; Sennett, R.; Wang, Z.; Su, Y.; Yang, L.; Ma'ayan, A.; Ornitz, D.; Kasper, M.; Rendl, M.

10.1101/414839 — developmental biology — Posted on 2018-09-12

1593 A conserved MFS orchestrates a subset of O-glycosylation to facilitate macrophage dissemination and tissue invasion

Valoskova, K.; Biebl, J.; Roblek, M.; Emtenani, S.; Gyoergy, A.; Misova, M.; Ratheesh, A.; Shkarina, K.; Larsen, I. S. B.; Vakhrushev, S. Y.; Clausen, H.; Siekhaus, D. E.

10.1101/415547 — cancer biology — Posted on 2018-09-12

1594 Carbohydrate activity regulation of floral quantity during the juvenile phase in black pepper (Piper nigrum L.)

Zu, C.; Yang, J.; Li, Z.; Wang, C.; Yu, H.

10.1101/414938 — biophysics — Posted on 2018-09-12

1595 Plantarflexor fiber length and tendon slack length are the strongest determinates of simulated single-leg heel raise function

Baxter, J. R.; Farber, D. C.; Hast, M. W.

10.1101/415679 — bioengineering — Posted on 2018-09-12

1596 The molecular structure of plant sporopollenin

Li, F.-S.; Phyo, P.; Jacobowitz, J.; Hong, M.; Weng, J.-K.

10.1101/415612 — biochemistry — Posted on 2018-09-12

1597 Immune differentiation regulator p100 tunes NF-κB responses to TNF

Chatterjee, B.; Roy, P.; Sarkar, U. A.; Ratra, Y.; Chawla, M.; Gomes, J.; Basak, S.

10.1101/414425 — systems biology — Posted on 2018-09-12

1598 Multiple sources of signal amplification within the B cell Ras/MAPK pathway

Mclaurin, J.; Weiner, O.

10.1101/415737 — systems biology — Posted on 2018-09-12

1599 Stable Carbon Isotopes in Zea mays

Twohey, R. J.; Roberts, L. M.; Studer, A. J.

10.1101/414789 — plant biology — Posted on 2018-09-12

1600 Growth of Sphagnum riparium is strongly rhythmic: Contribution of the seasonal, circalunar and third rhythmiccomponents

Mironov, V.; Kondratev, A.; Shkurko, A.

10.1101/415539 — plant biology — Posted on 2018-09-12

1601 Cluster Burst Synchronization in A Scale-Free Network of Inhibitory Bursting Neurons

Kim, S.-Y.; Lim, W.

10.1101/414847 — neuroscience — Posted on 2018-09-12

1602 Bio-On-Magnetic-Beads (BOMB): Open platform for high-throughput nucleic acid extraction and manipulation

Oberacker, P.; Stepper, P.; Bond, D. M.; Hohn, S.; Focken, J.; Meyer, V.; Schelle, L.; Sugrue, V. J.; Jeunen, G.-J.; Moser, T.; Hore, S. R.; von Meyenn, F.; Hipp, K.; Hore, T. A.; Jurkowski, T. P.

10.1101/414516 — molecular biology — Posted on 2018-09-12

1603 CLAMP directly interacts with MSL2 to facilitate Drosophila dosage compensation

Tikhonova, E.; Fedotova, A.; Bonchuk, A.; Mogila, V.; Larschan, E. N.; Georgiev, P. G.; Maksimenko, O.

10.1101/415455 — molecular biology — Posted on 2018-09-12

1604 Conserved Herpesvirus Protein Kinases Target SAMHD1 to Facilitate Virus Replication

Zhang, K.; Lv, D.-W.; Li, R.

10.1101/399063 — microbiology — Posted on 2018-09-12

1605 Multi-Omic Profiling Reveals Dynamics of the Phased Progression of Pluripotency

Yang, P.; Humphrey, S. J.; Cinghu, S.; Pathania, R.; Oldfield, A. J.; Kumar, D.; Perera, D.; Yang, J. Y. H.; James, D. E.; Mann, M.; Jothi, R.

10.1101/415430 — genomics — Posted on 2018-09-12

1606 Complete Genome Sequence of the Wolbachia wAlbB Endosymbiont of Aedes albopictus

Sinha, A.; Li, Z.; Sun, L.; Carlow, C.

10.1101/415521 — genomics — Posted on 2018-09-12

1607 R/qtl2: software for mapping quantitative trait loci with high dimensional data and multi-parent populations

Broman, K. W.; Gatti, D. M.; Simecek, P.; Furlotte, N. A.; Prins, P.; Sen, S.; Yandell, B. S.; Churchill, G. A.

10.1101/414748 — genetics — Posted on 2018-09-12

1608 Diagnostic Whole Exome Sequencing in Patients with Short Stature

Zhu, H.; Yang, Z.; Sun, J.; Li, W.; Yang, H.; Wang, L.; Gong, F.; Chen, S.; Lu, L.; Miao, H.; Yuan, X.; Liang, H.; Li, R.; Huang, H.; Peng, Z.; Asan, A.; Pan, H.

10.1101/414987 — genetics — Posted on 2018-09-12

1609 Ancestral admixture and structural mutation define global biodiversity in fission yeast

Tusso, S.; Nieuwenhuis, B. P. S.; Sedlazeck, F. J.; Davey, J. W.; Jeffares, D.; Wolf, J. B. W.

10.1101/415091 — evolutionary biology — Posted on 2018-09-12

1610 Hypothesis: A plastically-produced phenotype predicts host specialization and can precede subsequent mutations in bacteriophage

Maxwell, C. S.

10.1101/411983 — evolutionary biology — Posted on 2018-09-12

1611 Metabolic adaptations underlying genome flexibility in prokaryotes

Goyal, A.

10.1101/415182 — ecology — Posted on 2018-09-12

1612 Transient intracellular acidification regulates the core transcriptional heat shock response

Triandafillou, C. G.; Katanski, C. D.; Dinner, A. R.; Drummond, D. A.

10.1101/414706 — cell biology — Posted on 2018-09-12

1613 Biophysical mechanisms in the mammalian respiratory oscillator re-examined with a new data-driven computational model

Phillips, R.; John, T. T.; Koizumi, H.; Molkov, Y. I.; Smith, J. C.

10.1101/415190 — bioinformatics — Posted on 2018-09-12

1614 Establishment and Characterization of a Multi-Purpose Large Animal Exposure Chamber for Investigating Health Effects

Lo, D. D.; Peng, X.; Maltz, M. R.; Botthoff, J. K.; Aronson, E. L.; Nordgren, T. M.; Cocker, D. R.

10.1101/415604 — bioengineering — Posted on 2018-09-12

1615 artMAP: a user-friendly tool for mapping EMS-induced mutations in Arabidopsis

Javorka, P.; Raxwal, V. K.; Najvarek, J.; Riha, K.

10.1101/414433 — plant biology — Posted on 2018-09-12

1616 Effect of intracerebroventricular epinephrine microinjection on blood pressure and urinary sodium handling in gestational protein-restricted rat adult male offspring

Gontijo, J. A.; Boer, P. A.; Custodio, A. H.; Cardoso, B. V.

10.1101/415778 — physiology — Posted on 2018-09-12

1617 Dissociable prelexical and lexical contributions to visual word recognition and priming: Evidence from MEG and behavior

Eisenhauer, S.; Fiebach, C. J.; Gagl, B.

10.1101/410795 — neuroscience — Posted on 2018-09-12

1618 Quantification of Structural Brain Connectivityvia a Conductance Model

Frau-Pascual, A.; Fogarty, M.; Fischl, B.; Yendiki, A.; Aganj, I.; Alzheimer's Disease Neuroimaging Initiative,

10.1101/415489 — neuroscience — Posted on 2018-09-12

1619 Macroscale Cortical Organization and a Default-Like Transmodal Apex Network in the Marmoset Monkey

Buckner, R. L.; Margulies, D. S.

10.1101/415141 — neuroscience — Posted on 2018-09-12

1620 PISD is a mitochondrial disease gene causing skeletal dysplasia, cataracts and white matter changes

Shutt, T. E.; Zhao, T.; Goedhart, C. M.; Sam, P.; Lingrell, S.; Cornish, A.; Lamont, R. E.; Bernier, F. P.; Sinasac, D.; Parboosingh, J.; Vance, J.; Claypool, S. M.; Innes, M.

10.1101/413070 — molecular biology — Posted on 2018-09-12

1621 Epiclomal: probabilistic clustering of sparse single-cell DNA methylation data

P. E. de Souza, C.; Andronescu, M.; Masud, T.; Kabeer, F.; Biele, J.; Laks, E.; Lai, D.; Brimhall, J.; Wang, B.; Su, E.; Hui, T.; Cao, Q.; Wong, M.; Moksa, M.; Moore, R. A.; Hirst, M.; Aparicio, S.; Shah, S. P.

10.1101/414482 — genomics — Posted on 2018-09-12

1622 Linkage analysis and haplotype phasing in experimental autopolyploid populations with high ploidy level using hidden Markov models

Mollinari, M.; Garcia, A. A. F.

10.1101/415232 — genetics — Posted on 2018-09-12

1623 Prediction of malaria mosquito species and population age structure using mid-infrared spectroscopy and supervised machine learning

Gonzalez-Jimenez, M.; Babayan, S. A.; Khazaeli, P.; Doyle, M.; Walton, F.; Reedy, E.; Glew, T.; Viana, M.; Ranford-Cartwright, L.; Niang, A.; Siria, D.; Okumu, F. O.; Diabate, A.; Ferguson, H. M.; Baldini, F.; Wynne, K.

10.1101/414342 — bioinformatics — Posted on 2018-09-12

1624 Pharmacophore-driven Identification of N-Methyl-D-Receptor Antagonists as Potent Neuroprotective Agents Validated Using In-Vivo Studies

Sharma, M.; Mittal, A.; Singh, A.; Jainarayanan, A. K.; Sharma, S.; Paliwal, S.

10.1101/415646 — bioinformatics — Posted on 2018-09-12

1625 The effect of liver enzymes on adiposity: a Mendelian randomization study

LIU, J.; Au Yeung, S. L.; Kwok, M. K.; Leung, J. Y. Y.; Lin, S. L.; Hui, L. L.; Leung, G. M.; Schooling, C. M.

10.1101/404319 — epidemiology — Posted on 2018-09-12

1626 Assessing the utility of minority variant composition in elucidating RSV transmission pathways

Githinji, G.; Agoti, C. N.; Kibinge, N.; Henson, S.; Munywoki, P.; Brand, S.; Mendley, G.; Cane, P.; Cotten, M.; James Nokes, D.; J. Worby, C.

10.1101/411512 — epidemiology — Posted on 2018-09-12

1627 Association between long-term air pollution exposure and DNA methylation: the REGICOR study.

Sayols-Baixeras, S.; Fernandez-Sanles, A.; Prats, A.; Subirana, I.; Plusquin, M.; Künzli, N.; Marrugat, J.; Basagana, X.; Elosua, R.

10.1101/404483 — epidemiology — Posted on 2018-09-12

1628 Investigating the probability of establishment of Zika virus and detection through mosquito surveillance under different temperature conditions

Christofferson, R.

10.1101/406116 — epidemiology — Posted on 2018-09-12

1629 Rates of increase of antibiotic resistance and ambient temperature in Europe: a cross-national analysis of 28 countries between 2000-2016

McGough, S. F.; MacFadden, D. R.; Hattab, M. W.; Molbak, K.; Santillana, M.

10.1101/414920 — epidemiology — Posted on 2018-09-12

1630 Overestimation of the prevalence of eosinophilic colitis with reliance on a single billing code

Muir, A. B.; Jensen, E.; Wechsler, J.; Menard-Katcher, P.; Falk, G.; Aceves, S.; Furuta, G.; Dellon, E.; Rothenberg, M.; Spergel, J.

10.1101/414557 — epidemiology — Posted on 2018-09-12

1631 A decision-support framework to optimize border control for global outbreak mitigation

Gardner, L.; Rey, D.; Zlojutro, A.

10.1101/414185 — epidemiology — Posted on 2018-09-12

1632 The costs of misdiagnosed asthma in a longitudinal study of the general population

Ng, B.; Sadatsafavi, M.; Safari, A.; Fitzgerald, J. M.; Johnson, K. M.

10.1101/409870 — epidemiology — Posted on 2018-09-12

1633 Targeting hotspots to reduce transmission of malaria in Senegal: modeling of the effects of human mobility

Sallah, K.; Giorgi, R.; Ba, E. H.; Piarroux, M.; Piarroux, R.; Griffiths, K.; Cisse, B.; Gaudart, J.

10.1101/403626 — epidemiology — Posted on 2018-09-12

1634 Link between the numbers of particles and variants founding new HIV-1 infections depends on the timing of transmission

Thompson, R.; Wymant, C.; Spriggs, R.; Raghwani, J.; Fraser, C.; Lythgoe, K.

10.1101/404913 — epidemiology — Posted on 2018-09-12

1635 Increasing Rates of Diagnosis, Substantial Co-occurrence, and Variable Treatment Patterns of Eosinophilic Gastritis, Gastroenteritis and Colitis Based on 10 Year Data Across a Multi-Center Consortium

Pesek, R. D.; Reed, C. C.; Muir, A. B.; Fulkerson, P. C.; Menard-Katcher, C.; Falk, G. W.; Kuhl, J.; Magier, A. Z.; Ahmed, F.; Demarshall, M.; Gupta, A.; Gross, J.; Ashorobi, T.; Carpenter, C. L.; Krischer, J. P.; Gonsalves, N.; Spergel, J. M.; Gupta, S. K.; Furuta, G. T.; Rothenberg, M. E.; Dellon, E. S.

10.1101/413583 — epidemiology — Posted on 2018-09-12

1636 Limited marginal utility of deep sequencing for HIV drug resistance testing in the age of integrase inhibitors

Dalmat, R. R.; Makhsous, N.; Pepper, G.; Magaret, A.; Jerome, K. R.; Wald, A.; Greninger, A. L.

10.1101/414995 — epidemiology — Posted on 2018-09-12

1637 Effects and Feasibility of Hyperthermic Baths for Patients with Depressive Disorder: A Randomized Controlled Clinical Pilot Trial

Naumann, J.; Sadaghiani, C.; Kruza, I.; Denkel, L.; Kienle, G.; Huber, R.

10.1101/409276 — clinical trials — Posted on 2018-09-12

1638 Exploring mechanisms that affect coral cooperation: symbiont transmission mode, cell density and community composition

Kenkel, C. D.; Bay, L. K.

10.1101/067322 — evolutionary biology — Posted on 2018-09-12

1639 The Desmosome is a Mesoscale Lipid Raft-Like Membrane Domain

Lewis, J. D.; Caldara, A. L.; Zimmer, S. E.; Seybold, A.; Strong, N. L.; Stahley, S. N.; Frangakis, A. S.; Levental, I.; Wahl, J. K.; Mattheyses, A. L.; Sasaki, T.; Nakabayashi, K.; Hata, K.; Matsubara, Y.; Ishida-Yamamoto, A.; Amagai, M.; Kubo, A.; Kowalczyk, A. P.

10.1101/401455 — cell biology — Posted on 2018-09-12

1640 The evolutionary history of 2,658 cancers

Gerstung, M.; Jolly, C.; Leshchiner, I.; Dentro, S. C.; Gonzalez Rosado, S.; Rosebrock, D.; Mitchell, T. J.; Rubanova, Y.; Anur, P.; Yu, K.; Tarabichi, M.; Deshwar, A.; Wintersinger, J.; Kleinheinz, K.; Vazquez-Garcia, I.; Haase, K.; Jerman, L.; Sengupta, S.; Macintyre, G.; Malikic, S.; Donmez, N.; Livitz, D. G.; Cmero, M.; Demeulemeester, J.; Schumacher, S.; Fan, Y.; Yao, X.; Lee, J.; Schlesner, M.; Boutros, P. C.; Bowtell, D. D.; Zhu, H.; Getz, G.; Imielinski, M.; Beroukhim, R.; Sahinalp, S. C. C.; Ji, Y.; Peifer, M.; Markowetz, F.; Mustonen, V.; Yuan, K.; Wang, W.; Morris, Q. D.; Spellman,

10.1101/161562 — cancer biology — Posted on 2018-09-12

1641 pheno-seq - linking morphological features to gene expression in 3D cell culture systems

Tirier, S. M.; Park, J.; Preusser, F.; Amrhein, L.; Gu, Z.; Steiger, S.; Mallm, J.-P.; Waschow, M.; Eismann, B.; Gut, M.; Gut, I. G.; Rippe, K.; Schlesner, M.; Theis, F.; Fuchs, C.; Ball, C. R.; Glimm, H.; Eils, R.; Conrad, C.

10.1101/311472 — genomics — Posted on 2018-09-12

1642 Genome based QTL and meta-QTL analyses of thousand-kernel weight in tetraploid wheat

Avni, R.; Oren, L.; Shabtai, G.; Assili, S.; Pozniak, C.; Hale, I.; Ben-David, R.; Peleg, Z.; Distelfeld, A.

10.1101/415240 — plant biology — Posted on 2018-09-12

1643 New de novo assembly of the Atlantic bottlenose dolphin (Tursiops truncatus) improves genome completeness and provides haplotype phasing.

Martinez-Viaud, K. A.; Lawley, C. T.; Vergara, M. M.; Ben-Zvi, G.; Biniashvili, T.; Baruch, K.; St. Leger, J.; Le, J.; Natarjan, A.; Rivera, M.; Guillergan, M.; Jaeger, E.; Steffy, B.; Zimin, A.

10.1101/376301 — genomics — Posted on 2018-09-12

1644 The community and ecosystem consequences of intraspecific diversity: a meta-analysis

Raffard, A.; Santoul, F.; Cucherousset, J.; Blanchet, S.

10.1101/328112 — ecology — Posted on 2018-09-12

1645 Assessment Of Genetic Structure Of The Endangered Forest Species Boswellia Serrata Roxb. Population In Central India

Vaishnav, V.; Mahesh, S.; Kumar, P.

10.1101/412874 — plant biology — Posted on 2018-09-12

1646 When one phenotype is not enough - divergent evolutionary trajectories govern venom variation in a widespread rattlesnake species

Zancolli, G.; Calvete, J. J.; Cardwell, M. D.; Greene, H. W.; Hayes, W. K.; Hegarty, M. J.; Herrmann, H.-W.; Holycross, A. T.; Lannutti, D. I.; Mulley, J. F.; Sanz, L.; Travis, Z. D.; Whorley, J. R.; Wuster, C. E.; Wuster, W.

10.1101/413831 — evolutionary biology — Posted on 2018-09-12

1647 HSCs contribute actively to native multilineage hematopoiesis but with reduced differentiation capacity upon aging

Säwen, P.; Eldeeb, M.; Erlandsson, E.; Kristiansen, T. A.; Laterza, C.; Kokaia, Z.; Karlsson, G.; Yuan, J.; Soneji, S.; Mandal, P. K.; Rossi, D.; Bryder, D.

10.1101/415323 — developmental biology — Posted on 2018-09-12

1648 Intensive and Specific Feedback Self-control of the Argonauts and MicroRNA Targeting Activity

Wang, D.; Gill, A.; Zhang, F.

10.1101/406926 — cell biology — Posted on 2018-09-12

1649 IMPROVING THE PERFORMANCE OF THE RNA AMBER FORCE FIELD BY TUNING THE HYDROGEN-BONDING INTERACTIONS

Kuhrova, P.; Mlynsky, V.; Zgarbova, M.; Krepl, M.; Bussi, G.; Best, R. B.; Otyepka, M.; Sponer, J.; Banas, P.

10.1101/410993 — biochemistry — Posted on 2018-09-12

1650 Data-independent acquisition mass spectrometry enables reproducible characterization of microbiota function

Aakko, J.; Pietila, S.; Suomi, T.; Mahmoudian, M.; Toivonen, R.; Kouvonen, P.; Rokka, A.; Hanninen, A.; Elo, L. L.

10.1101/413021 — microbiology — Posted on 2018-09-12

1651 Machine Learning to Predict Osteoporotic Fracture Risk from Genotypes

Forgetta, V.; Keller-Baruch, J.; Forest, M.; Durand, A.; Bhatnagar, S.; Kemp, J.; Morris, J. A.; Kanis, J. A.; Kiel, D. P.; McCloskey, E. V.; Rivadeneira, F.; Johannson, H.; Harvey, N.; Cooper, C.; Evans, D. M.; Pineau, J.; Leslie, W. D.; Greenwood, C. M.; Richards, J. B.

10.1101/413716 — genomics — Posted on 2018-09-12

1652 Distinct evolutionary dynamics of horizontal gene transfer in drug resistant and virulent clones of Klebsiella pneumoniae

Wyres, K. L.; Wick, R. R.; Judd, L. M.; Froumine, R.; Tokolyi, A.; Gorrie, C. L.; Lam, M. M. C.; Duchene, S.; Jenney, A.; Holt, K. E.

10.1101/414235 — microbiology — Posted on 2018-09-12

1653 Analysis of a large data set reveals haplotypes carrying putatively recessive lethal alleles with pleiotropic effects on economically important traits in beef cattle

Jenko, J.; McClure, M. C.; Matthews, D.; McClure, J.; Johnsson, M.; Gorjanc, G.; Hickey, J. M.

10.1101/414292 — genetics — Posted on 2018-09-12

1654 Competing paths over fitness valleys in growing populations

Nicholson, M. D.; Antal, T.

10.1101/415208 — evolutionary biology — Posted on 2018-09-12

1655 Molecular Subtyping reveals Immune Alterations associated with Progression of Bronchial Premalignant Lesions

Beane, J.; Mazzilli, S. A.; Campbell, J. D.; Duclos, G.; Krysan, K.; Moy, C.; Perdomo, C.; Schaffer, M.; Liu, G.; Zhang, S.; Liu, H.; Vick, J.; Dhillon, S. S.; Platero, S. J.; Dubinett, S. M.; Stevenson, C.; Reid, M. E.; Lenburg, M. E.; Spira, A. E.

10.1101/413898 — cancer biology — Posted on 2018-09-12

1656 Disease networks and their contribution to disease understanding and drug repurposing. A survey of the state of the art

Garcia del Valle, E.; Lagunes Garcia, G.; Prieto Santamaria, L.; Zanin, M.; Menasalvas Ruiz, E.; Rodriguez Gonzalez, A.

10.1101/415257 — bioinformatics — Posted on 2018-09-12

1657 Creating a scalable deep learning based Named Entity Recognition Model for biomedical textual data by repurposing BioSample free-text annotations

Tsui, B. Y.; Mollah, S.; Skola, D.; Dow, M.; Hsu, C.-N.; Carter, H.

10.1101/414136 — bioinformatics — Posted on 2018-09-12

1658 Machine learning models identify multimodal measurements highly predictive of transdiagnostic symptom severity for mood, anhedonia, and anxiety

Mellem, M. S.; Liu, Y.; Gonzalez, H.; Kollada, M.; Martin, W. J.; Ahammad, P.

10.1101/414037 — neuroscience — Posted on 2018-09-12

1659 Structural basis for recruitment of DAPK1 to the KLHL20 E3 ligase

Chen, Z.; Picaud, S.; Filippakopoulos, P.; D'Angiolella, V.; Bullock, A. N.

10.1101/414250 — molecular biology — Posted on 2018-09-12

1660 Using eDNA methodologies to identify thepresence/absence of S. thermophilus in yogurtproducts

Bejdo, V.

10.1101/414060 — genomics — Posted on 2018-09-12

1661 Accurate error control in high dimensional association testing using conditional false discovery rates

Liley, J.; Wallace, C.

10.1101/414318 — genomics — Posted on 2018-09-12

1662 The contribution of psychiatric risk alleles to a general liability to psychopathology in early life

Riglin, L.; Thapar, A. K.; Leppert, B.; Martin, J.; Richards, A.; Anney, R.; Davey Smith, G.; Tilling, K.; Stergiakouli, E.; Lahey, B. B.; O'Donovan, M. C.; Collishaw, S.; Thapar, A.

10.1101/409540 — genetics — Posted on 2018-09-12

1663 Historical biogeography of the leopard (Panthera pardus) and its extinct Eurasian populations

Paijmans, J. L. A.; Barlow, A.; Foerster, D. W.; Henneberger, K.; Meyer, M.; Nickel, B.; Nagel, D.; Worsoe Havmoller, R.; Baryshnikov, G.; Joger, U.; Rosendahl, W.; Hofreiter, M.

10.1101/413120 — evolutionary biology — Posted on 2018-09-12

1664 COmplexome Profiling ALignment (COPAL) reveals remodeling of mitochondrial protein complexes in Barth syndrome

Van Strien, J.; Guerrero-Castillo, S.; Chatzispyrou, I. A.; Houtkooper, R.; Brandt, U.; Huynen, M.

10.1101/411660 — bioinformatics — Posted on 2018-09-12

1665 NEMO: Cancer subtyping by integration of partial multi-omic data

Rappoport, N.; Shamir, R.

10.1101/415224 — bioinformatics — Posted on 2018-09-12

1666 Hormonal regulation of social ascent and temporal patterns of behavior in an African cichlid

Alward, B. A.; Hilliard, A. T.; York, R. A.; Fernald, R. D.

10.1101/414045 — animal behavior and cognition — Posted on 2018-09-12

1667 Combined effects of migration distance, foraging method vegetation density, and population density on wing shapes of boreal songbirds

Noreau, F.; Desrochers, A.

10.1101/413351 — zoology — Posted on 2018-09-12

1668 Biological variation in the sizes, shapes and locations of visual cortical areas in the mouse

Waters, J.; Lee, E.; Gaudreault, N.; Griffin, F.; Lecoq, J.; Slaughterbeck, C.; Sullivan, D.; Farrell, C.; Perkins, J.; Reid, D.; Feng, D.; Graddis, N.; Garrett, M.; Li, Y.; Long, F.; Mochizuki, C.; Roll, K.; Zhuang, J.; Thompson, C.

10.1101/414698 — neuroscience — Posted on 2018-09-12

1669 Prior precision modulates the minimisation of prediction error in human auditory cortex

Hsu, Y.-F.; Waszak, F.; Hämäläinen, J. A.

10.1101/415083 — neuroscience — Posted on 2018-09-12

1670 Neurogenetic dissection of the Drosophila innate olfactory processing center

Dolan, M.-J.; Frechter, S.; Bates, A. S.; Dan, C.; Huoviala, P.; Roberts, R. J. V.; Schlegel, P.; Dhawan, S.; Tabano, R.; Dionne, H.; Christoforou, C.; Close, K.; Sutcliffe, B.; Giuliani, B.; Li, F.; Costa, M.; Ihrke, G.; Meissner, G.; Bock, D.; Aso, Y.; Rubin, G.; Jefferis, G.

10.1101/404277 — neuroscience — Posted on 2018-09-12

1671 Dispersal limitations of early life stages and sibling aggregations in a broadcasting Millepora hydrocoral, as revealed by parentage analysis

Dube, C. E.; Boissin, E.; Merciere, A.; Planes, S.

10.1101/413963 — ecology — Posted on 2018-09-12

1672 AptCompare: optimized de novo motif discovery of RNA aptamers via HTS-SELEX

Shieh, K. R.; Kratschmer, C.; Maier, K. E.; Greally, J. M.; Levy, M.; Golden, A.

10.1101/413757 — bioinformatics — Posted on 2018-09-12

1673 Repeated assessment of anxiety-like behavior in mice: a new tool with increased reliability and consistency.

PREVOT, T. D.; Misquitta, K. A.; Fee, C.; Newton, D.; Sibille, E.; Banasr, M.

10.1101/414029 — animal behavior and cognition — Posted on 2018-09-12

1674 Miro-dependent mitochondrial pool of CENP-F and its farnesylated C-terminal domain are dispensable for normal development in mice

Peterka, M.; Kornmann, B.

10.1101/415315 — cell biology — Posted on 2018-09-12

1675 Nuclear-cytoplasmic compartmentalization of the herpes simplex virus 1 infected cell transcriptome is co-ordinated by the viral endoribonuclease vhs and cofactors to facilitate the translation of late proteins

Pheasant, K.; Möller-Levet, C. S.; Jones, J.; Depledge, D.; Breuer, J.; Elliott, G.

10.1101/415497 — microbiology — Posted on 2018-09-12

1676 An Open-Source Plate Reader

Szymula, K.; Magaraci, M. S.; Patterson, M.; Clark, A.; Mannickarottu, S. G.; Chow, B. Y.

10.1101/413781 — bioengineering — Posted on 2018-09-12

1677 The 22q11 low copy repeats are characterized by unprecedented size and structure variability

Demaerel, W.; Mostovoy, Y.; Yilmaz, F.; Vervoort, L.; Pastor, S.; Hestand, M. S.; Swillen, A.; Vergaelen, E.; Geiger, E. A.; Coughlin, C. R.; Chow, S. K.; McDonald-McGinn, D.; Morrow, B.; Kwok, P.-Y.; Xiao, M.; Emanuel, B. S.; Shaikh, T. H.; Vermeesch, J. R.

10.1101/403873 — genomics — Posted on 2018-09-12

1678 Reshuffling yeast chromosomes with CRISPR/Cas9

Fleiss, A.; O'Donnell, S.; Agier, N.; Delmas, S.; Fischer, G.

10.1101/415349 — genomics — Posted on 2018-09-12

1679 Uncovering a role for the dorsal hippocampal commissure in episodic memory

Postans, M.; Parker, G.; Lundell, H.; Ptito, M.; Hamandi, K.; Gray, W.; Aggleton, J.; Dyrby, T.; Jones, D.; Winter, M.

10.1101/415158 — neuroscience — Posted on 2018-09-12

1680 Sex differences in the behavioral and synaptic consequences of a single exposure to cannabinoid at puberty and adulthood

Borsoi, M.; Manduca, A.; Bara, A.; Lassalle, O.; Pelissier-Alicot, A.-L.; Manzoni, O. J.

10.1101/415067 — neuroscience — Posted on 2018-09-12

1681 Esterase Activity is Affected by Genetics, Age, Insecticide Exposure, and Viral Infection in the Honey Bee, Apis mellifera

Rinkevich, F. D.; Margotta, J. W.; Simone-Finstrom, M.; De Guzman, L. I.; Healy, K. B.

10.1101/415356 — pharmacology and toxicology — Posted on 2018-09-12

1682 The metabolic repair enzyme phospho-glycolate phosphatase regulates central carbon metabolism and fosmidomycin sensitivity in Plasmodium falciparum

Dumont, L.; Richardson, M. B.; van der Peet, P.; Dixon, M. W.; Williams, S. J.; McConville, M. J.; Tilley, L.; Cobbold, S.

10.1101/415505 — biochemistry — Posted on 2018-09-12

1683 Reconciling high-throughput gene essentiality data with metabolic network reconstructions

Blazier, A.; Papin, J. A.

10.1101/415448 — systems biology — Posted on 2018-09-12

1684 Characterization of the early response of Arabidopsis thaliana to Dickeya dadantii infection using expression profiling

Van Gijsegem, F.; Bitton, F.; Laborie, A.-L.; Kraepiel, Y.; Pedron, J.

10.1101/415380 — plant biology — Posted on 2018-09-12

1685 The Plasmodium falciparum cytoplasmic translation apparatus: a promising therapeutic target not yet exploited by clinically approved antimalarials.

Sheridan, C. M.; Garcia, V. E.; Ahyong, V.; DeRisi, J. L.

10.1101/415513 — molecular biology — Posted on 2018-09-12

1686 The selective autophagy receptors Optineurin and p62 are both required for innate host defense against mycobacterial infection

Zhang, R.; Varela, M.; Vallentgoed, W.; van der Vaart, M.; Meijer, A. H.

10.1101/415463 — immunology — Posted on 2018-09-12

1687 The sensation of groove is affected by the interaction of rhythmic and harmonic complexity

Matthews, T.; Witek, M.; Heggli, O. A.; Penhune, V.; Vuust, P.

10.1101/415372 — neuroscience — Posted on 2018-09-12

1688 Evaluating the effects of data visualisation techniques on interpretation and preference in clinical quality reports: A cross-sectional study.

Koh, H. J. W.; Earnest, A.; Davis, I. D.; Loh, E.; Evans, S. M.

10.1101/415414 — epidemiology — Posted on 2018-09-12

1689 NOJAH: Not Just Another Heatmap for Genome-Wide Cluster Analysis

Rupji, M.; Dwivedi, B.; Kowalski, J.

10.1101/415398 — bioinformatics — Posted on 2018-09-12

1690 Regulation of Histone Deacetylase 3 by Metal Cations and 10-Hydroxy-2E-Decenoic Acid: Possible Molecular Epigenetic Mechanisms of Queen-Worker Bee Differentiation

Polsinelli, G. A.; Yu, H. D.

10.1101/415364 — biochemistry — Posted on 2018-09-12

1691 Subsurface microbial habitats in an extreme desert Mars-analogue environment

Warren-Rhodes, K.; Lee, K.; Archer, S.; Cabrol, N.; Ng-Boyle, L.; Wettergreen, D.; Zacny, K.; Pointing, S.; NASA Life in the Atacama project team,

10.1101/269605 — microbiology — Posted on 2018-09-12

1692 Protein Family Classification using Deep Learning

K S, N.; Babu R, M. H.; R, V.; KP, S.

10.1101/414128 — genomics — Posted on 2018-09-11

1693 Prenatal Bisphenol A Exposure in Mice Induces Multi-tissue Multi-omics Disruptions Linking to Cardiometabolic Disorders

Shu, L.; Meng, Q.; Tsai, B.; Diamante, G.; Chen, Y.-W.; Mikhail, A.; Luk, H.; Ritz, B.; Allard, P.; Yang, X.

10.1101/336214 — systems biology — Posted on 2018-09-11

1694 Predicting Evolutionarily Stable Strategies fromFunctional Responses of Sonoran Desert Annuals toPrecipitation

Cuello, W. S.; Gremer, J.; Trimmer, P.; Sih, A.; Schreiber, S.

10.1101/271080 — ecology — Posted on 2018-09-11

1695 Management of Hsp90-Dependent Protein Folding by Small Molecule Targeting the Aha1 Co-Chaperone

Singh, J. K.; Tait, B.; Guy, N.; Sivils, J. C.; Culbertson, D.; Dickey, C.; Kuo, S. Y.; Gestwicki, J. E.; Hutt, D. M.; Dyson, J. H.; Cox, M. B.; Balch, W. E.

10.1101/412908 — biochemistry — Posted on 2018-09-11

1696 Dental and facial characteristics of osteogenesis imperfecta type V

Retrouvey, J.-M.; Taqi, D.; Tamimi, F.; Dagdeviren, D.; Glorieux, F. H.; Lee, B.; Hazboun, R.; Krakow, D.; Sutton, R.; Members of the BBD Consortium, ; Rauch, F.

10.1101/413633 — genetics — Posted on 2018-09-11

1697 A reverse Turing-test for predicting social deficits in people with Autism

Forgeot d'Arc, B.; Marie, D.; Daunizeau, J.

10.1101/414540 — neuroscience — Posted on 2018-09-11

1698 Transsaccadic feature interactions in multiple reference frames: an fMRIa study

Baltaretu, B. R.; Dunkley, B. T.; Monaco, S.; Chen, Y.; Crawford, J. D.

10.1101/413815 — neuroscience — Posted on 2018-09-11

1699 Meta-analytic evidence for the plurality of mechanisms in transdiagnostic structural MRI studies of hallucination status

Rollins, C.; Garrison, J. R.; Simons, J. S.; Rowe, J. B.; O'Callaghan, C.; Murray, G.; Suckling, J.

10.1101/413609 — neuroscience — Posted on 2018-09-11

1700 The community structure of functional brain networks exhibits scale-specific patterns of variability across individuals and time

Betzel, R. F.; Bertolero, M. A.; Gordon, E. M.; Gratton, C.; Dosenbach, N. U.; Bassett, D. S.

10.1101/413278 — neuroscience — Posted on 2018-09-11

1701 The Perceptual Neural Trace of Memorable Unseen Scenes

Mohsenzadeh, Y.; Mullin, C.; Oliva, A.; Pantazis, D.

10.1101/414052 — neuroscience — Posted on 2018-09-11

1702 Symbolic labelling in 5-month-old human infants

Kabdebon, C.; Dehaene-Lambertz, G. D.

10.1101/414599 — neuroscience — Posted on 2018-09-11

1703 Hippocampal-entorhinal transformations in abstract frames of reference

Kaplan, R.; Friston, K. J.

10.1101/414524 — neuroscience — Posted on 2018-09-11

1704 Molecular characterization of effector protein SAP54 in Bellis Virescence Phytoplasma (16SrIII-J)

Fernandez, F. D.; Debat, H. J.; Conci, L. R.

10.1101/411140 — molecular biology — Posted on 2018-09-11

1705 Fast fluorescence lifetime imaging reveals the maturation process of α-synuclein aggregates in ageing Caenorhabditis elegans

Laine, R. F.; Sinnige, T.; Ma, K. Y.; Haack, A. J.; Poudel, C.; Gaida, P.; Curry, N.; Perni, M.; Nollen, E. A. A.; Dobson, C. M.; Vendruscolo, M.; Kaminski Schierle, G. S.; Kaminski, C. F.

10.1101/414714 — biophysics — Posted on 2018-09-11

1706 Integrated Analysis Revealed Hub Genes in Breast Cancer

Jin, H.; Huang, X.; Shao, K.; Li, G.; Wang, J.; Yang, H.; Hou, Y.

10.1101/414532 — bioinformatics — Posted on 2018-09-11

1707 Protein Family Classification using Deep Learning

R, V.; Babu R, M. H.; R, V.; KP, S.; K S, N.

10.1101/414128 — genomics — Posted on 2018-09-11

1708 Population structure, genetic connectivity, and adaptation in the Olympia oyster (Ostrea lurida) along the west coast of North America

Silliman, K.

10.1101/414623 — evolutionary biology — Posted on 2018-09-11

1709 Novel analysis of HT-SELEX data elucidates the role of DNA shape in transcription factor binding

Pal, S.; Hoinka, J.; Przytycka, T. M.

10.1101/413922 — bioinformatics — Posted on 2018-09-11

1710 Easybiotics: a GUI for 3D physical modelling of multi-species bacterial populations

Naylor, J.; Fellermann, H.; Krasnogor, N.

10.1101/412197 — bioinformatics — Posted on 2018-09-11

1711 Precursor microRNA Identification Using Deep Convolutional Neural Networks

Do, B. T.; Golkov, V.; Gurel, G. E.; Cremers, D.

10.1101/414656 — bioinformatics — Posted on 2018-09-11

1712 iDEG: A single-subject method for assessing gene differential expression from two transcriptomes of an individual

Li, Q.; Rachid Zaim, S.; Aberasturi, D.; Berghout, J.; Li, H.; Kenost, C.; Zhang, H. H.; Lussier, Y. A.

10.1101/405332 — bioinformatics — Posted on 2018-09-11

1713 NUCOME: A Comprehensive Database of Nucleosome Organizations in Mammalian Genomes

Chen, X.; Yang, H.; Zhang, Y.

10.1101/414094 — bioinformatics — Posted on 2018-09-11

1714 The biochemical basis of microRNA targeting efficacy

McGeary, S. E.; Lin, K. S.; Shi, C. Y.; Bisaria, N.; Bartel, D. P.

10.1101/414763 — biochemistry — Posted on 2018-09-11

1715 Structural basis of light-induced redox regulation in the Calvin cycle

Mcfarlane, C.; Shah, N.; Kabasakal, B. V.; Cotton, C. A. R.; Bubeck, D.; Murray, J. W.

10.1101/414334 — biochemistry — Posted on 2018-09-11

1716 Inhibitor of the spindle assembly checkpoint surpasses apoptosis sensitizer in synergy with taxanes

Han, T.-L.; Jiang, Z.; Li, Y.-T.; Wu, D.-S.; Ji, J.; Lin, H.; Hu, B.; Sha, H.

10.1101/414359 — cancer biology — Posted on 2018-09-11

1717 Miro ubiquitination is critical for efficient damage-induced PINK1/Parkin-mediated mitophagy

Lopez-Domenech, G.; Covill-Cooke, C.; Howden, J. H.; Birsa, N.; Morfill, C.; Brandon, N. J.; Kittler, J. T.

10.1101/414664 — neuroscience — Posted on 2018-09-11

1718 Axonal tree morphology and signal propagation dynamics improve neuronal classification

Ofer, N.; Shefi, O.; Yaari, G.

10.1101/414615 — neuroscience — Posted on 2018-09-11

1719 Dynamin binding protein is required for Xenopus laevis kidney development

DeLay, B. D.; Baldwin, T. A.; Miller, R. K.

10.1101/414458 — developmental biology — Posted on 2018-09-11

1720 New Drosophila long-term memory genes revealed by assessing computational function prediction methods.

Kacsoh, B. Z.; Barton, S.; Jiang, Y.; Zhou, N.; Mooney, S. D.; Friedberg, I.; Radivojac, P.; Greene, C. S.; Bosco, G.

10.1101/414565 — neuroscience — Posted on 2018-09-11

1721 ATM is activated by ATP depletion and modulates mitochondrial function through NRF1

Chow, H.-M.; Cheng, A.; Song, X.; Swerdel, M. R.; Hart, R. P.; Herrup, K.

10.1101/414490 — neuroscience — Posted on 2018-09-11

1722 Factor cooperation for chromosome discrimination in Drosophila

Albig, C.; Tikhonova, E.; Krause, S.; Maksimenko, O.; Regnard, C.; Becker, P. B.

10.1101/414193 — molecular biology — Posted on 2018-09-11

1723 Differential Gene Expression Analysis of a Small Colony Variant of Escherichia coli K-12

Paratore, A. W.; Santos, V.; Bibis, S.; Hirshfield, I. N.

10.1101/413468 — molecular biology — Posted on 2018-09-11

1724 The zebrafish orthologue of familial Alzheimer’s disease gene PRESENILIN 2 is required for normal adult melanotic skin pigmentation

Jiang, H.; Newman, M.; Lardelli, M.

10.1101/414144 — genetics — Posted on 2018-09-11

1725 Intraductal patient derived xenografts of estrogen receptor positive breast cancer recapitulate the histopathological spectrum and metastatic potential of human lesions

Brisken, C.; Fiche, M.; Sflomos, G.; Treboux, A.; Stravodimou, A.; Scabia, V.; Ayyanan, A.; Reseau Lausannois du Sein, ; Zaman, K.; Battista, L.

10.1101/409177 — cancer biology — Posted on 2018-09-11

1726 AlleleAnalyzer: a tool for personalized and allele-specific sgRNA design

Keough, K. C.; Lyalina, S.; Olvera, M. P.; Whalen, S.; Conklin, B. R.; Pollard, K. S.

10.1101/342923 — bioinformatics — Posted on 2018-09-11

1727 A comprehensive model of DNA fragmentation for the preservation of High Molecular Weight DNA

Klingstrom, T.; Bongcam-Rudloff, E.; Vinnere Pettersson, O.

10.1101/254276 — molecular biology — Posted on 2018-09-11

1728 Complexity Matching and Requisite Variety

Mahmoodi, K.; West, B. J.; Grigolini, P.

10.1101/414755 — evolutionary biology — Posted on 2018-09-11

1729 Genetic and Neuroanatomical Support for Functional Brain Network Dynamics in Epilepsy

Reddy, P. G.; Betzel, R. F.; Khambhati, A. N.; Shah, P.; Kini, L.; Litt, B.; Lucas, T. H.; Davis, K. A.; Bassett, D. S.

10.1101/412395 — neuroscience — Posted on 2018-09-11

1730 Phase resetting in human auditory cortex to visual speech

Megevand, P.; Mercier, M. R.; Groppe, D. M.; Zion Golumbic, E.; Mesgarani, N.; Beauchamp, M. S.; Schroeder, C. E.; Mehta, A. D.

10.1101/405597 — neuroscience — Posted on 2018-09-11

1731 Discerning the functional networks behind processing of music and speech through human vocalizations

Angulo-Perkins, A.; Concha, L.

10.1101/411074 — neuroscience — Posted on 2018-09-11

1732 GABAergic neurons in the olfactory cortex projecting to the lateral hypothalamus in mice

Murata, K.; Kinoshita, T.; Fukazawa, Y.; Kobayashi, K.; Kobayashi, K.; Miyamichi, K.; Okuno, H.; Bito, H.; Sakurai, Y.; Yamaguchi, M.; Mori, K.; Manabe, H.

10.1101/413328 — neuroscience — Posted on 2018-09-11

1733 A cortical route for face-like pattern processing in human newborns

Buiatti, M.; Di Giorgio, E.; Piazza, M.; Polloni, C.; Menna, G.; Taddei, F.; Baldo, E.; Vallortigara, G.

10.1101/414284 — neuroscience — Posted on 2018-09-11

1734 Neural responses to heartbeats as a mechanism for distinguishing self from other during imagination

Babo-Rebelo, M.; Buot, A.; Tallon-Baudry, C.

10.1101/414573 — neuroscience — Posted on 2018-09-11

1735 Inhibition of Mycobacterium tuberculosis DosRST two-component regulatory system signaling by targeting response regulator DNA binding and sensor kinase heme

Zheng, H.; Aleiwi, B.; Ellsworth, E.; Abramovitch, R. B.

10.1101/411793 — microbiology — Posted on 2018-09-11

1736 The NuA4 acetyltransferase and non-canonical chromatin-associated MRN/ATM activity temporally define senescence-associated secretory programs

Malaquin, N.; Carrier-Leclerc, A.; Martinez, A.; Dessureault, M.; Ghadaouia, S.; Coppe, J.-P.; Nadeau, S.; Cardin, G.; Campisi, J.; Rodier, F.

10.1101/413732 — cell biology — Posted on 2018-09-11

1737 Cortical control of locomotor muscle activity through muscle synergies in humans: a neural decoding study

Yokoyama, H.; Kaneko, N.; Ogawa, T.; Kawashima, N.; Watanabe, K.; Nakazawa, K.

10.1101/413567 — neuroscience — Posted on 2018-09-11

1738 SEASONAL CHANGES IN BIRD ASSEMBLAGES OF A FOREST-STEPPE ECOTONE IN NORTH PATAGONIA

Cueto, V. R.; Gorosito, C. A.

10.1101/338772 — ecology — Posted on 2018-09-11

1739 Stem cell receptor degradation by niche cells restricts signaling

Ladyzhets, S.; Inaba, M.

10.1101/414078 — developmental biology — Posted on 2018-09-11

1740 Cortico-basal-ganglia communication: Temporally structured activity for selective motor control

Fischer, P.; Lipski, W.; Neumann, W.-J.; Turner, R. S.; Fries, P.; Brown, P.; Richardson, R. M.

10.1101/413286 — neuroscience — Posted on 2018-09-11

1741 Contribution of FEF to attentional periodicity during visual search: a TMS study

Dugue, L.; Beck, A.-A.; Marque, P.; VanRullen, R.

10.1101/414383 — neuroscience — Posted on 2018-09-11

1742 Endogenous and exogenous attention distinctly modulate fMRI activity in visual cortex

Dugue, L.; Merriam, E. P.; Heeger, D. J.; Carrasco, M.

10.1101/414508 — neuroscience — Posted on 2018-09-11

1743 Machine Learning to Predict Osteoporotic Fracture Risk from Genotypes

10.1101/413716 — genomics — Posted on 2018-09-11

1744 Effects of Orientation Change during Environmental Learning on Age-Related Difference in Spatial Memory

Yamamoto, N.; Fox, M. J.; Boys, E.; Ord, J.

10.1101/412965 — neuroscience — Posted on 2018-09-11

1745 Is faster always better? The walking speed-dependency of gait variability in bilateral vestibulopathy

McCrum, C.; Lucieer, F.; van de Berg, R.; Willems, P.; Perez Fornos, A.; Guinand, N.; Karamanidis, K.; Kingma, H.; Meijer, K.

10.1101/413955 — neuroscience — Posted on 2018-09-11

1746 Visual deprivation independent shift of ocular dominance induced by cross-modal plasticity

Teichert, M.; Isstas, M.; Liebmann, L.; Huebner, C. A.; Wieske, F.; Winter, C.; Bolz, J.

10.1101/413229 — neuroscience — Posted on 2018-09-11

1747 Variability in the timing of a β-catenin pulse biases a stochastic cell fate decision in C. elegans

Kroll, J. R.; Tsiaxiras, J.; van Zon, J. S.

10.1101/245225 — developmental biology — Posted on 2018-09-11

1748 Trading off the cost of conflict against expected rewards

Sidarus, N.; Palminteri, S.; Chambon, V.

10.1101/412809 — neuroscience — Posted on 2018-09-11

1749 The atypical thiol-disulfide exchange protein alpha-DsbA2 from Wolbachia pipientis is a homotrimeric disulfide isomerase

Walden, P. M.; Lakshmanane, P.; Halili, M.; Heras, B.; King, G.; Whitten, A. E.; Martin, J. L.

10.1101/412205 — biochemistry — Posted on 2018-09-11

1750 Improving the diagnostic yield of exome-sequencing, by predicting gene-phenotype associations using large-scale gene expression analysis

Deelen, P.; van Dam, S.; Herkert, J. C.; Karjalainen, J. M.; Brugge, H.; Abbott, K. M.; van Diemen, C. C.; van der Zwaag, P. A.; Gerkes, E. H.; Folkertsma, P.; Gillett, T.; van der Velde, K. J.; Kanninga, R.; van den Akker, P.; Jan, S. Z.; Hoorntje, E. T.; te Rijdt, W. P.; Vos, Y. J.; Jongbloed, J. D. H.; van Ravenswaaij-Arts, C. M. A.; Sinke, R.; Sikkema-Raddatz, B.; Kerstjens-Frederikse, W. S.; Swertz, M. A.; Franke, L.

10.1101/375766 — genetics — Posted on 2018-09-11

1751 simGWAS: a fast method for simulation of large scale case-control GWAS summary statistics

Fortune, M. D.; Wallace, C.

10.1101/313023 — genomics — Posted on 2018-09-11

1752 Genome analysis of the unicellular eukaryote Euplotes vannus reveals molecular basis for sex determination and tolerance to environmental stresses

Chen, X.; Jiang, Y.; Gao, F.; Zheng, W.; Krock, T. J.; Stover, N. A.; Lu, C.; Katz, L. A.; Song, W.

10.1101/357715 — genomics — Posted on 2018-09-11

1753 Cluster expansion of apolipoprotein D (ApoD) genes in teleost fishes

Gu, L.; Xia, C.

10.1101/265538 — evolutionary biology — Posted on 2018-09-11

1754 Robustness of RADseq for evolutionary network reconstruction from gene trees

Blanco-Pastor, J. L.; Bertrand, Y. J.; Liberal, I. M.; Wei, Y.; Brummer, E. C.; Pfeil, B. E.

10.1101/414243 — genetics — Posted on 2018-09-11

1755 Very few sites can reshape a phylogenetic tree

Francis, W. R.; Canfield, D. E.

10.1101/413518 — evolutionary biology — Posted on 2018-09-11

1756 Genome-wide admixture is common across the Heliconius radiation

Kozak, K. M.; McMillan, O.; Joron, M.; Jiggins, C. D.

10.1101/414201 — evolutionary biology — Posted on 2018-09-11

1757 Pleistocene climate changes explain large-scale genetic variation in a dominant grassland species, Lolium perenne L.

Blanco-Pastor, J. L.; Manel, S.; Barre, P.; Roschanski, A. M.; Willner, E.; Dehmer, K. J.; Hegarty, M.; Muylle, H.; Ruttink, T.; Roldan-Ruiz, I.; Ledauphin, T.; Escobar-Gutierrez, A.; Sampoux, J.-P.

10.1101/414227 — evolutionary biology — Posted on 2018-09-11

1758 The genomic view of diversification

Marin, J.; Achaz, G.; Crombach, A.; Lambert, A.

10.1101/413427 — evolutionary biology — Posted on 2018-09-11

1759 Myh10 deficiency leads to defective extracellular matrix remodeling and pulmonary disease

Kim, H.-T.; Yin, W.; Jin, Y.-J.; Panza, P.; Gunawan, F.; Grohmann, B.; Buettner, C.; Sokol, A. M.; Preussner, J.; Guenther, S.; Kostin, S.; Ruppert, C.; Bhagwat, A. M.; Ma, X.; Graumann, J.; Looso, M.; Guenther, A.; Adelstein, R. S.; Offermanns, S.; Stainier, D. Y. R.

10.1101/414268 — developmental biology — Posted on 2018-09-11

1760 Persistent Staphylococcus aureus infections in children with chronic lung disease: a multi-omics analysis of bacterial adaptation to define novel therapeutic approaches

TAN, X.; Coureuil, M.; Ramond, E.; Euphrasie, D.; Dupuis, M.; Tros, F.; Meyer, J.; Nemanzny, I.; Chhuon, C.; Guerrera, I. C.; Ferroni, A.; Sermet-Gaudelus, I.; Nassif, X.; Charbit, A.; Jamet, A.

10.1101/414409 — microbiology — Posted on 2018-09-11

1761 Oct1/Pou2f1 is selectively required for gut regeneration and regulates gut malignancy

Vazquez-Arreguin, K.; Bensard, C.; Schell, J. C.; Swanson, E.; Chen, X.; Rutter, J.; Tantin, D.

10.1101/414391 — cancer biology — Posted on 2018-09-11

1762 Ligand modulation of allosteric networks in an ancestral steroid receptor

Okafor, C. D.; Ortlund, E. A.

10.1101/414375 — biophysics — Posted on 2018-09-11

1763 Spatial variation in the biochemical and isotopic composition of corals during bleaching and recovery

Wall, C. B.; Ritson-Williams, R.; Popp, B. N.; Gates, R. D.

10.1101/414086 — physiology — Posted on 2018-09-11

1764 Axenic Biofilm Formation and Aggregation by Synechocystis PCC 6803 is Induced by Changes in Nutrient Concentration, and Requires Cell Surface Structure

Allen, R. C.; Rittmann, B. E.; Curtiss, R.

10.1101/414151 — microbiology — Posted on 2018-09-11

1765 Lessons learned when looking for non-neutral ecological processes in the built environment: the bacterial and fungal microbiota of shower tiles

Adams, R. I.; Lymperopoulou, D.

10.1101/413773 — microbiology — Posted on 2018-09-11

1766 Bacterial clearance enhanced by α2, 3- and α2, 6-sialyllactose via receptor-mediated endocytosis and phagocytosis

Kim, J.; Kim, Y. J.; Kim, J. W.

10.1101/414177 — immunology — Posted on 2018-09-11

1767 Ultrasensitive molecular controllers for quasi-integral feedback

Cuba Samaniego, C.; Franco, E.

10.1101/413914 — synthetic biology — Posted on 2018-09-11

1768 Inter-individual differences in human brain structure and morphometry link to population variation in demographics and behavior

Llera Arenas, A.; Wolfers, T.; Mulders, P.; Beckmann, C. F.

10.1101/413104 — neuroscience — Posted on 2018-09-11

1769 Characterisation and development of aspirin inducible biosensors in E. coli Nissle 1917 and SimCells

Chen, X.; Steel, H.; Wu, Y.; Wang, Y.; Xu, J.; Rampley, C.; Thompson, I.; Papachristodoulou, A.; Huang, W.

10.1101/414169 — microbiology — Posted on 2018-09-11

1770 Optogenetics enables real-time spatiotemporal control over spiral wave dynamics in an excitable cardiac system

Majumder, R.; Feola, I.; Teplenin, A. S.; de Vries, A. A. F.; Panfilov, A.; Pijnappels, D. A.

10.1101/413658 — bioinformatics — Posted on 2018-09-11

1771 Polymeric perfluorocarbon nanoemulsions are ultrasound-activated wireless drug infusion catheters

Zhong, Q.; Yoon, B. C.; Aryal, M. R.; Wang, J. B.; Karthik, A.; Airan, R. D.

10.1101/315044 — bioengineering — Posted on 2018-09-10

1772 Spatial and temporal organization of RecA in the Escherichia coli DNA-damage response

Ghodke, H.; Paudel, B.; Lewis, J. S.; Jergic, S.; Gopal, K.; Romero, Z. J.; Wood, E. A.; Woodgate, R.; Cox, M. M.; van Oijen, A. M.

10.1101/413880 — biophysics — Posted on 2018-09-10

1773 Manipulation of microbiota reveals altered myelination and white matter plasticity in a model of Huntington disease

Radulescu, C. I.; Garcia-Miralles, M.; Sidik, H.; Ferrari Bardile, C.; Yusof, N. A. B. M.; Lee, H. U.; Ho, E. X. P.; Chu, C. W.; Layton, E.; Low, D.; De Sessions, P. F.; Pettersson, S.; Ginhoux, F.; Pouladi, M. A.

10.1101/413112 — neuroscience — Posted on 2018-09-10

1774 Context triggers the retrieval of long-term memories into working memory to guide attention

Itthipuripat, S.; Woodman, G. F.

10.1101/401216 — neuroscience — Posted on 2018-09-10

1775 Cytoskeleton mechanics determine resting size and activation dynamics of platelets.

Mathur, A.; Correia, S. R.; Dmitrieff, S.; Gibeaux, R.; Kalinina, I.; Quidwai, T.; Ries, J.; Nedelec, F.

10.1101/413377 — cell biology — Posted on 2018-09-10

1776 Stem cell receptor degradation by niche cells restricts signaling

Inaba, M.; Ladyzhets, S.

10.1101/414078 — cell biology — Posted on 2018-09-10

1777 Membrane insertion function for SUN-KASH complex revealed by high resolution analysis of yeast centrosomes

Chen, J.; Gardner, J. M.; Yu, Z.; Smith, S. E.; McKinney, S.; Slaughter, B. D.; Unruh, J. R.; Jaspersen, S. L.

10.1101/413799 — cell biology — Posted on 2018-09-10

1778 Autophagy regulates hyaluronan synthase 2 levels in vascular endothelial cells

Chen, C. G.; Gubbiotti, M. A.; Han, X.; Yu, Y.; Linhardt, R. J.; Iozzo, R. V.

10.1101/413948 — cell biology — Posted on 2018-09-10

1779 A lysosomal dimmer switch regulates cellular quiescence depth

Fujimaki, K.; Li, R.; Chen, H.; Della Croce, K.; Zhang, H. H.; Xing, J.; Bai, F.; Yao, G.

10.1101/413989 — cell biology — Posted on 2018-09-10

1780 The NuA4 acetyltransferase and non-canonical chromatin-associated MRN/ATM activity temporally define senescence-associated secretory programs

Malaquin, N.; Carrier-Leclerc, A.; Martinez, A.; Dessureault, M.; Ghadaouia, S.; Coppe, J.-P.; Nadeau, S.; Cardin, G.; Campisi, J.; Rodier, F.

10.1101/413732 — cell biology — Posted on 2018-09-10

1781 Modularity, criticality and evolvability of a developmental gene regulatory network

Verd, B.; Monk, N. A.; Jaeger, J.

10.1101/413211 — developmental biology — Posted on 2018-09-10

1782 Morphogenesis and differentiation of embryonic vascular smooth muscle cells in zebrafish

Whitesell, T. R.; Chrystal, P.; Ryu, J.-R.; Munsie, N.; Grosse, A.; French, C.; Workentine, M. L.; Li, R.; Zhu, L. J.; Waskiewicz, A.; Lehmann, O. J.; Lawson, N. D.; Childs, S. J.

10.1101/414003 — developmental biology — Posted on 2018-09-10

1783 Mechanical Coupling Coordinates the Co-elongation of Axial and Paraxial Tissues in Avian Embryos

Xiong, F.; Ma, W.; Benazeraf, B.; Mahadevan, L.; Pourquie, O.

10.1101/412866 — developmental biology — Posted on 2018-09-10

1784 Fascetto Interacting Protein (FIP) Regulates Fascetto (PRC1) to Ensure Proper Cytokinesis and Ploidy

Swider, Z. T.; Ng, R. K.; Varadarajan, R.; Fagerstrom, C. J.; Rusan, N. M.

10.1101/413997 — cell biology — Posted on 2018-09-10

1785 Template-free detection and classification of heterogeneous membrane-bound complexes in cryo-electron tomograms

Martinez-Sanchez, A.; Kochovski, Z.; Laugks, U.; Meyer zum Alten Borgloh, J.; Pfeffer, S.; Baumeister, W.; Lucic, V.

10.1101/413484 — biophysics — Posted on 2018-09-10

1786 Agrobacterium tumefaciens divisome proteins regulate the transition from polar growth to cell division

Howell, M. L.; Aliashkevich, A.; Sundararajan, K.; Daniel, J. J.; Lariviere, P. J.; Goley, E.; Cava, F.; Brown, P. J.

10.1101/412759 — microbiology — Posted on 2018-09-10

1787 CD95/Fas ligand mRNA is toxic to cells

Putzbach, W.; Haluck-Kangas, A.; Gao, Q. Q.; Sarshad, A. A.; Bartom, E. T.; Stults, A. M.; Qadir, A. S.; Hafner, M.; Peter, M. E.

10.1101/330324 — cancer biology — Posted on 2018-09-10

1788 A Matched-filter Based Algorithm for Subcellular Classification of T-system in Cardiac Tissues

Colli, D. F.; Blood, R.; Sankarankutty, A. C.; Sachse, F. B.; Frisk, M.; Louch, W. E.; Kekenes-Huskey, P. M.

10.1101/371328 — biophysics — Posted on 2018-09-10

1789 Exploring Genetic Variation That Influences Brain Methylation In Attention-Deficit/Hyperactivity Disorder

Pineda-Cirera, L.; Shivalikanjli, A.; Cabana-Dominguez, J.; Demontis, D.; Rajagopal, V. M.; Borglum, A.; Faraone, S. V.; Cormand, B.; Fernandez-Castillo, N.

10.1101/413005 — genetics — Posted on 2018-09-10

1790 Spatial and temporal organization of RecA in the Escherichia coli DNA-damage response

Ghodke, H.; Paudel, B.; Lewis, J. S.; Jergic, S.; Gopal, K.; Romero, Z. J.; Wood, E. A.; Woodgate, R.; Cox, M. M.; van Oijen, A. M.

10.1101/413880 — biophysics — Posted on 2018-09-10

1791 Trimitomics: An efficient pipeline for mitochondrial assembly from transcriptomic reads in non-model species

Plese, B.; Rossi, M. E.; Kenny, N.; Taboada, S.; Koutsouveli, V.; Riesgo, A.

10.1101/413138 — genomics — Posted on 2018-09-10

1792 Parental Allele-Specific Protein Synthesis Dynamics in Single Cells In Vivo

Lo, C.-A.; Chen, B.

10.1101/413849 — cell biology — Posted on 2018-09-10

1793 Interphase chromatin as a self-returning random walk: Can DNA fold into liquid trees?

Huang, K.; Backman, V.; Szleifer, I.

10.1101/413872 — biophysics — Posted on 2018-09-10

1794 Truncated power-law distribution of group sizes in antelope

Minasandra, P.; Isvaran, K.

10.1101/411199 — animal behavior and cognition — Posted on 2018-09-10

1795 Identification and characterization of genes found in Coccidioides spp. but absent in nonpathogenic Onygenales

Kirkland, T. N.

10.1101/413906 — microbiology — Posted on 2018-09-10

1796 C57BL/6 substrain differences in inflammatory and neuropathic nociception and genetic mapping of a major quantitative trait locus underlying acute thermal nociception

Bryant, C. D.; Bagdas, D.; Goldberg, L. R.; Khalefa, T.; Reed, E. R.; Kirkpatrick, S. L.; Kelliher, J. C.; Chen, M. M.; Johnson, W. E.; Mulligan, M. K.; Damaj, M. I.

10.1101/413856 — genetics — Posted on 2018-09-10

1797 Network Structure During Encoding Predicts Working Memory Performance

Wodeyar, A.; Srinivasan, R.

10.1101/409615 — neuroscience — Posted on 2018-09-10

1798 Genomic, transcriptomic, and structural analysis of Pseudomonas virus PA5oct highlights the molecular complexity among Jumbo phages

Danis-Wlodarczyk, K.; Blasdel, B. G.; Jang, H. B.; Vandenheuvel, D.; Noben, J.-P.; Drulis-Kawa, Z.; Lavigne, R.

10.1101/406421 — genomics — Posted on 2018-09-10

1799 A model-based high throughput method for fecundity estimation in fruit fly studies.

Ng'oma, E.; King, E. G.; Middleton, K. M.

10.1101/382804 — bioinformatics — Posted on 2018-09-10

1800 gFACs: Filtering, analysis, and conversion to unify genome annotations across alignment and gene prediction frameworks.

Caballero, M.; Wegrzyn, J.

10.1101/402396 — bioinformatics — Posted on 2018-09-10

1801 Statistical structure of locomotion and its modulation by odors

Tao, L.; Ozarkar, S.; Bhandawat, V.

10.1101/404772 — neuroscience — Posted on 2018-09-10

1802 BDNF controls neuropsychiatric manifestation via autophagic regulation of p62 and GABAA receptor trafficking

Tomoda, T.; Sumitomo, A.; Hirota-Tsuyada, Y.; Miyachi, H.; Oh, H.; French, L.; Sibille, E.

10.1101/334466 — neuroscience — Posted on 2018-09-10

1803 The relationship between age, neural differentiation, and memory performance

Koen, J. D.; Hauck, N.; Rugg, M. D.

10.1101/345181 — neuroscience — Posted on 2018-09-10

1804 Global expansion and redistribution of Aedes-borne virus transmission risk with climate change

Ryan, S. J.; Carlson, C. J.; Mordecai, E. A.; Johnson, L. R.

10.1101/172221 — epidemiology — Posted on 2018-09-10

1805 Munc18-1 catalyzes neuronal SNARE assembly by templating SNARE association

Jiao, J.; He, M.; Port, S. A.; Baker, R. W.; Xu, Y.; Qu, H.; Xiong, Y.; Wang, Y.; Jin, H.; Eisemann, T. J.; Hughson, F. M.; Zhang, Y.

10.1101/413724 — biophysics — Posted on 2018-09-10

1806 Formation of the substantia nigra requires Reelin-mediated fast, laterally-directed migration of dopaminergic neurons

Blaess, S.; Vaswani, A. R.; Weykopf, B.; Hagemann, C.; Fried, H.-U.; Brüstle, O.

10.1101/413708 — developmental biology — Posted on 2018-09-10

1807 Intra- and inter-individual metabolic profiling highlights carnitine and lysophosphatidylcholine pathways as key molecular defects in type-2 diabetes

Diamanti, K.; Cavalli, M.; Pan, G.; Pereira, M. J.; Kumar, C.; Skrtic, S.; Grabherr, M.; Riserus, U.; Eriksson, J. W.; Komorowski, J.; Wadelius, C.

10.1101/413203 — physiology — Posted on 2018-09-10

1808 Coverage-based detection of copy number alterations in mixed samples using DNA sequencing data: a theoretical framework for evaluating statistical power

Ramdas, S.; Pan, Y.; Li, J. Z.

10.1101/413690 — bioinformatics — Posted on 2018-09-10

1809 Predominance of cis-regulatory changes in parallel expression divergence of sticklebacks.

Verta, J.-P.; Jones, F.

10.1101/412932 — genomics — Posted on 2018-09-10

1810 Brain age prediction of healthy subjects on anatomic MRI with deep learning: going beyond with an \"explainable AI\" mindset

Herent, P.; Jegou, S.; Wainrib, G.; Clozel, T.

10.1101/413302 — neuroscience — Posted on 2018-09-10

1811 Phage Mediate Bacterial Self Recognition

Wong, S.; Guo, Y.; Kim, J.-S.; Wang, X.; Wood, T. K.

10.1101/413146 — molecular biology — Posted on 2018-09-10

1812 Phosphoproteomics of Highly ABA-Induced1 identifies AT Hook Like10 phosphorylation required for growth regulation during stress

Wong, M. M.; Bhaskara, G. B.; Wen, T.-N.; Lin, W.-D.; Nguyen, T. T.; Chong, G. L.; Verslues, P.

10.1101/413013 — plant biology — Posted on 2018-09-10

1813 COMPASS Family Histone Methyltransferase ASH2L Mediates Corticogenesis via Transcriptional Regulation of Wnt Signalling

Li, L.; Ruan, X.; Wen, C.; Chen, P.; Liu, W.; Zhu, L.; Xiang, P.; Zhang, X.; Wei, Q.; Hou, L.; Yin, B.; Yuan, J.; Qiang, B.; Shu, P.; Peng, X.

10.1101/413674 — neuroscience — Posted on 2018-09-10

1814 Multiple Introductions of the Mycobacterium tuberculosis Lineage 2 Beijing into Africa over centuries

Rutaihwa, L. K.; Menardo, F.; Stucki, D.; Gygli, S. M.; Ley, S. D.; Malla, B.; Feldmann, J.; Borrell Farnov, S.; Beisel, C.; Middelkoop, K.; Carter, J. E.; Diero, L.; Ballif, M.; Jugheli, L.; Reither, K.; Fenner, L.; Brites, D.; Gagneux, S.

10.1101/413039 — evolutionary biology — Posted on 2018-09-10

1815 In vivo, regulated reconstitution of spindle checkpoint arrest and silencing through chemical-induced dimerisation

Amin, P.; Soper ni Chafraidh, S.; Leontiou, I.; Hardwick, K. G.

10.1101/406983 — cell biology — Posted on 2018-09-10

1816 Nuclear envelope budding is an evolutionary conserved phenomenon

Panagaki, D.; Neutze, R.; Hoog, J.

10.1101/413153 — cell biology — Posted on 2018-09-10

1817 The intimate knowledge of DNA crystals revealed by molecular dynamics simulations

Kuzmanic, A.; Dans, P. D.; Orozco, M.

10.1101/413336 — biophysics — Posted on 2018-09-10

1818 A cost-effective approach to Super-resolution Optical Fluctuation (SOFI) microscopy using an industry-grade CMOS camera

Van den Eynde, R.; Sandmeyer, A.; Vandenberg, W.; Duwe, S.; Huebner, W.; Dedecker, P.; Huser, T.; Mueller, M.

10.1101/413179 — biophysics — Posted on 2018-09-10

1819 Protein Multiple Alignments: Sequence-based vs Structure-based Programs

Carpentier, M.; Chomilier, J.

10.1101/413369 — bioinformatics — Posted on 2018-09-10

1820 Ribosome profiling analysis of eEF3-depleted Saccharomyces cerevisiae

Kasari, V.; Margus, T.; Atkinson, G. C.; Johansson, M. J. O.; Hauryliuk, V.

10.1101/413252 — biochemistry — Posted on 2018-09-10

1821 Utilisation of staphylococcal immune evasion protein Sbi as a novel vaccine adjuvant

Yang, Y.; Back, C.; Graewert, M.; Wahid, A.; Denton, H.; Kildani, R.; Paulin, J.; Woerner, K.; Kaiser, W.; Svergun, D. I.; Sartbaeva, A.; Watts, A.; Marchbank, K.; van den Elsen, J. M.

10.1101/413294 — biochemistry — Posted on 2018-09-10

1822 Decoupling the roles of cell shape and mechanical stress in orienting and cueing epithelial mitosis

Nestor-Bergmann, A.; Stooke-Vaughan, G. A.; Goddard, G. K.; Starborg, T.; Jensen, O. E.; Woolner, S.

10.1101/177592 — cell biology — Posted on 2018-09-10

1823 Index hopping on the Illumina HiseqX platform and its consequences for ancient DNA studies

van der Valk, T.; Vezzi, F.; Ormestad, M.; Dalen, L.; Guschanski, K.

10.1101/179028 — bioinformatics — Posted on 2018-09-10

1824 DNAmod: the DNA modification database

Sood, A. J.; Viner, C.; Hoffman, M. M.

10.1101/071712 — bioinformatics — Posted on 2018-09-10

1825 Association of Peripheral Blood Pressure with Grey Matter Volume in 19- to 40-Year-Old Adults

Schaare, H. L.; Kharabian Masouleh, S.; Beyer, F.; Kumral, D.; Uhlig, M.; Reinelt, J. D.; Reiter, A. M.; Lampe, L.; Babayan, A.; Erbey, M.; Roebbig, J.; Schroeter, M. L.; Okon-Singer, H.; Mueller, K.; Mendes, N.; Margulies, D. S.; Witte, A. V.; Gaebler, M.; Villringer, A.

10.1101/239160 — neuroscience — Posted on 2018-09-10

1826 Genome wide association analysis in a mouse advanced intercross line

Gonzales, N. M.; Seo, J.; Hernandez-Cordero, A. I.; St. Pierre, C. L.; Gregory, J. S.; Distler, M. G.; Abney, M.; Canzar, S.; Lionikas, A.; Palmer, A. A.

10.1101/230920 — genetics — Posted on 2018-09-10

1827 Onecut factors and Pou2f2 regulate diversification and migration of V2 interneurons in the mouse developing spinal cord

Harris, A.; Masgutova, G.; Collin, A.; Toch, M.; Hidalgo-Figueroa, M.; Jacob, B.; Corcoran, L. M.; Francius, C.; Clotman, F.

10.1101/413054 — developmental biology — Posted on 2018-09-10

1828 Probing brain developmental patterns of myelination and associations with psychopathology in youth using gray/white matter contrast

Norbom, L. B.; Doan, N. T.; Alnaes, D.; Kaufmann, T.; Moberget, T.; Rokicki, J.; Andreassen, O. A.; Westlye, L. T.; Tamnes, C. K.

10.1101/305995 — neuroscience — Posted on 2018-09-10

1829 The Viral Protein Corona Directs Viral Pathogenesis and Amyloid Aggregation

Ezzat, K.; Pernemalm, M.; Palsson, S.; Roberts, T. C.; Jarver, P.; Dondalska, A.; Bestas, B.; Sobkowiak, M. J.; Levanen, B.; Skold, M.; Thompson, E. A.; Kari, O. K.; Lajunen, T.; Ishchenko, Y.; Malm, T.; Wood, M. J. A.; Power, U. F.; Masich, S.; Linden, A.; Sandberg, J. K.; Lehtio, J.; Spetz, A.-L.; Andaloussi, S. E.

10.1101/246785 — microbiology — Posted on 2018-09-10

1830 Heterogeneity of Sonic Hedgehog Response Dynamics and Fate Specification in Single Neural Progenitors

Xiong, F.; Tentner, A. R.; Hiscock, T. W.; Huang, P.; Megason, S.

10.1101/412858 — developmental biology — Posted on 2018-09-10

1831 NetSurfP-2.0: improved prediction of protein structural features by integrated deep learning

Klausen, M. S.; Jespersen, M. C.; Nielsen, H.; Jensen, K. K.; Jurtz, V. I.; Soenderby, C. K.; Sommer, M. O. A.; Winther, O.; Nielsen, M.; Petersen, B.; Marcatili, P.

10.1101/311209 — bioinformatics — Posted on 2018-09-10

1832 Palaeobiological inferences based on long bone epiphyseal and diaphyseal structure - the forelimb of xenarthrans (Mammalia)

Amson, E.; Nyakatura, J. A.

10.1101/318121 — paleontology — Posted on 2018-09-10

1833 Modulation of voltage-dependent K+ conductances in photoreceptors trades off investment in contrast gain for bandwidth

Heras, F. J. H.; Vähäsöyrinki, M.; Niven, J. E.

10.1101/344325 — neuroscience — Posted on 2018-09-10

1834 Cardelino: Integrating whole exomes and single-cell transcriptomes to reveal phenotypic impact of somatic variants

McCarthy, D. J.; Rostom, R.; Huang, Y.; Kunz, D. J.; Danecek, P.; Bonder, M. J.; Hagai, T.; HipSci Consortium, ; Wang, W.; Gaffney, D. J.; Simons, B. D.; Stegle, O.; Teichmann, S. A.

10.1101/413047 — genomics — Posted on 2018-09-10

1835 The equivocal mean age of parents in a cohort

Bienvenu, F.

10.1101/371245 — ecology — Posted on 2018-09-10

1836 Malaria and Burkitt’s Lymphoma: An In Silico Analysis of Gene Expression Links between Malaria and Burkitt’s Lymphoma and Potential Anticancer Activity of Artemisinin Derivatives

Elsayed, I.; Amin, M.; Mahdi, M.; Wang, X.; Rizig, M.

10.1101/356782 — bioinformatics — Posted on 2018-09-10

1837 Quantifying GC-biased gene conversion in great ape genomes using polymorphism-aware models

Borges, R.; Szöllosi, G.; Kosiol, C.

10.1101/380246 — genetics — Posted on 2018-09-10

1838 Life-history traits inform on population trends when assessing the conservation status of a declining tiger shark population

Brown, C.; Roff, G.

10.1101/395509 — ecology — Posted on 2018-09-10

1839 Lesion Attributes Segmentation for Melanoma Detection with Deep Learning

Chen, E. Z.; Dong, X.; Wu, J.; Jiang, H.; Li, X.; Rong, R.

10.1101/381855 — bioinformatics — Posted on 2018-09-10

1840 Basalin: an evolutionary unconstrained protein revealed via a conserved role in basal plate function

Dean, S.; Moreira-Leite, F.; Gull, K.

10.1101/398230 — cell biology — Posted on 2018-09-10

1841 Parameter tuning is a key part of dimensionality reduction via deep variational autoencoders for single cell RNA transcriptomics

Hu, Q.; Greene, C. S.

10.1101/385534 — bioinformatics — Posted on 2018-09-10

1842 Accurate Determination of Human CPR Conformational Equilibrium by smFRET using Dual Orthogonal Non-Canonical Amino Acid Labeling

Quast, R. B.; Fatemi, F.; Kranendonk, M.; Margeat, E.; Truan, G.

10.1101/407684 — biochemistry — Posted on 2018-09-10

1843 Modular reconfiguration of an auditory-control brain network supports adaptive listening behavior

Alavash, M.; Tune, S.; Obleser, J.

10.1101/409797 — neuroscience — Posted on 2018-09-10

1844 Efficient curation of genebanks using next generation sequencing reveals substantial duplication of germplasm accessions

Singh, N.; Wu, S.; Raupp, J.; Sehgal, S.; Arora, S.; Tiwari, V.; Vikram, P.; Singh, S.; Chhuneja, P.; Gill, B.; Poland, J.

10.1101/410779 — genomics — Posted on 2018-09-10

1845 Microbial Cells Harboring a Mitochondrial Gene Are Capable of CO2 Capture

Zhou, Y.; Ouyang, L.; Yi, X.; Gan, T.; Qi, J.; Wan, Y.; Wang, Y.; An, S.; Shi, Y.; Yang, W.; Chen, W.; Luo, Z.; Li, J.; Luo, J.; Nuertai, X.; Zhu, X.; Yang, F.; Zhao, B.; Zhang, W.; Ye, Z.-W.; Zhang, X.; Weng, S.; Liu, Q.; Cao, W.; He, J.

10.1101/411090 — bioengineering — Posted on 2018-09-10

1846 Glutathione S-Transferase Genotype polymorphism and Primary Open-Angle Glaucoma in an Italian population

Sacca, S. C.; Cutolo, C. A.; Gandolfi, S.; Marchini, G.; Quaranta, L.; Izzotti, A.; Rossi, T.; Traverso, C. E.

10.1101/413435 — epidemiology — Posted on 2018-09-10

1847 Cell type-specific complement expression from healthy and diseased retinae

Pauly, D.; Schäfer, N.; Grassmann, F.; Pfaller, A. M.; Straub, T.; Weber, B. H.; Hauck, S. M.; Grosche, A.

10.1101/413088 — neuroscience — Posted on 2018-09-10

1848 Vascular effects on the BOLD response and the retinotopic mapping of hV4

Boyd Taylor, H.; Puckett, A. M.; Isherwood, Z. J.; Schira, M. M.

10.1101/413492 — neuroscience — Posted on 2018-09-10

1849 Emergence of social inequality in a spatial-ecological public goods game

Joshi, J.; Brännström, A.; Dieckmann, U.

10.1101/412700 — evolutionary biology — Posted on 2018-09-10

1850 Projection layers improve deep learning models of regulatory DNA function

Hawkins-Hooker, A.; Kenlay, H.; Reid, J.

10.1101/412734 — bioinformatics — Posted on 2018-09-10

1851 Group decision-making is optimal in adolescence

Haller, S. P.; Bang, D.; Bahrami, B.; Lau, J. Y.

10.1101/412726 — neuroscience — Posted on 2018-09-10

1852 Maternal inflammation significantly impacts cortical interneuron development in a subtype-specific manner

Vasistha, N. A.; Pardo-Navarro, M.; Gasthaus, J.; Weijers, D.; Mueller, M. K.; Pfisterer, U.; von Engelhardt, J.; Hougaard, K. S.; Khodosevich, K.

10.1101/412981 — neuroscience — Posted on 2018-09-10

1853 Role of PML-Nuclear Bodies in Human Herpesvirus 6A and 6B Genome Integration.

Collin, V.; Gravel, A.; Kaufer, B.; Flamand, L.

10.1101/413575 — microbiology — Posted on 2018-09-10

1854 Descriptive analysis in time and space of recorded data for Buruli Ulcer occurrence in Victoria over 22 years

Avumegah, M. S.; Tay, E. L.; Alexandersen, S.; Michalski, W. P.; O'Brien, D. P.; Jeanne, I.; Athan, E.

10.1101/413542 — epidemiology — Posted on 2018-09-10

1855 Scalable tagging of endogenous genes by homology-independent intron targeting

Serebrenik, Y. V.; Sansbury, S. E.; Santhosh-Kumar, S.; Henao-Mejia, J.; Shalem, O. H.

10.1101/412445 — cell biology — Posted on 2018-09-10

1856 Nuclear transcriptomes of the seven neuronal cell types that constitute the Drosophila mushroom bodies.

Shih, M.-F. M.; Davis, F. P.; Henry, G. L.; Dubnau, J.

10.1101/412569 — neuroscience — Posted on 2018-09-10

1857 Degradation of the extracellular matrix is part of the pathology of ulcerative colitis

Kirov, S.; Sasson, A.; Zhang, C.; Chasalow, S.; Dongre, A.; Steen, H.; Stensballe, A.; Andersen, V.; Birkelund, S.; Bennike, T. B.

10.1101/412684 — molecular biology — Posted on 2018-09-10

1858 Agrobacterium tumefaciens divisome proteins regulate the transition from polar growth to cell division

Howell, M. L.; Aliashkevich, A.; Sundararajan, K.; Daniel, J. J.; Lariviere, P. J.; Goley, E.; Cava, F.; Brown, P. J.

10.1101/412759 — microbiology — Posted on 2018-09-10

1859 Treatment-Specific Composition of Gut Microbiota Is Associated with Disease Remission in a Pediatric Crohn’s Disease Cohort

Sprockett, D.; Fischer, N.; Boneh, R. S.; Turner, D.; Kierkus, J.; Sladek, M.; Escher, J.; Wine, E.; Yerushalmi, B.; Dias, J. A.; Shaoul, R.; Kori, M.; Snapper, S.; Holmes, S.; Bousvaros, A.; Levine, A.; Relman, D. A.

10.1101/412890 — microbiology — Posted on 2018-09-10

1860 Close proximity interactions support transmission of ESBL-K. pneumoniae but not ESBL-E. coli in healthcare settings

Duval, A.; Obadia, T.; Boëlle, P.-Y.; Fleury, E.; Herrmann, J.-L.; Guillemot, D.; Temime, L.; Opatowski, L.; i-Bird Study group,

10.1101/413500 — epidemiology — Posted on 2018-09-10

1861 Transmission mode is associated with environment type and taxa across bacteria-eukaryote symbioses

Russell, S. L.

10.1101/412882 — ecology — Posted on 2018-09-10

1862 Inducing rapid seed germination of native cool season grasses with solid matrix priming and seed extrusion technology

Madsen, M. D.; Svejcar, L.; Radke, J.; Hulet, A.

10.1101/413401 — ecology — Posted on 2018-09-10

1863 Tibetan antelope rests like a Puppet

Luo, Y.; Wang, L.; Yang, L.; Tan, M.; Wu, Y.; Li, Y.; Li, Z.

10.1101/413393 — animal behavior and cognition — Posted on 2018-09-10

1864 The Utilization of Pharmacophore-based 3D QSAR Modeling and Virtual Screening in Safety Profiling: a Case Study to Identify Antagonistic Activities against Adenosince Receptor, A2aR, using 1,897 known drugs

Fan, F.; Hamadeh, H.; Toledo Warshaviak, D.; Dunn, R.

10.1101/413385 — pharmacology and toxicology — Posted on 2018-09-10

1865 Drift-diffusion explains response variability and capacity for tracking objects

Daneshi, A.; Azarnoush, H.; Towhidkhah, F.; Ghazizadeh, A.

10.1101/412650 — neuroscience — Posted on 2018-09-10

1866 HLA RNAseq reveals high allele-specific variability in mRNA expression

Johansson, T.; Yohannes, D. A.; Koskela, S.; Partanen, J.; Saavalainen, P.

10.1101/413534 — immunology — Posted on 2018-09-10

1867 A CRISPR/Cas9-generated zebrafish mutant implicates PPP2R3B loss in idiopathic scoliosis pathogenesis in Turner syndrome.

Jenkins, D.; Seda, M.; Crespo Lopez, B.; Corcelli, M.

10.1101/413526 — genetics — Posted on 2018-09-10

1868 Evaluation of management of snake bites in a teaching hospital in Northern Ghana- a retrospective descriptive study

yakubu, a.-s.; Abdul-Mumin, A.; Rivera, O.

10.1101/413559 — epidemiology — Posted on 2018-09-10

1869 Checkpoint kinase 1 is essential for fetal haematopoiesis and hematopoietic stem cell survival

Villunger, A.; Schuler, F.; Afreen, S.; Manzl, C.; Haecker, G.; Erlacher, M.

10.1101/413310 — developmental biology — Posted on 2018-09-10

1870 Hybrid Automata Library

Bravo, R. R.; Robertson-Tessi, M.; Anderson, A. R. A.

10.1101/411538 — cancer biology — Posted on 2018-09-10

1871 Critical role of miR-10b in BRafV600E dependent anchorage independent growth and invasion of melanoma cells

Datar, I.; Kalpana, G.; de la Serna, I.; Trumbly, R.; Choi, J.; Yeung, K. C.

10.1101/413476 — cancer biology — Posted on 2018-09-10

1872 Sea lettuce systematics: lumping or splitting?

Horta, P.; Batista, M. B.; Cunha, R. L.; Castilho, R.

10.1101/413450 — molecular biology — Posted on 2018-09-10

1873 Multivariate Computational Analysis of Gamma Delta T cell Inhibitory Receptor Signatures Reveals the Divergence of Healthy and ART-Suppressed HIV+ Aging

Belkina, A.; Starchenko, A.; Drake, K.; Proctor, E.; Pihl, R.; Olson, A.; Lauffenburger, D.; Lin, N.; Snyder-Cappione, J. E.

10.1101/412312 — immunology — Posted on 2018-09-10

1874 Genetic characterization of outbred Sprague Dawley rats and utility for genome-wide association studies

Gileta, A. F.; Fitzpatrick, C. J.; Chitre, A. S.; St. Pierre, C. L.; Joyce, E. V.; Maguire, R. J.; McLeod, A. M.; Gonzales, N. M.; Williams, A. E.; Morrow, J. D.; Robinson, T. E.; Flagel, S. B.; Palmer, A. A.

10.1101/412924 — genetics — Posted on 2018-09-10

1875 Rac1 Activated by DOCK1 in Combination with Rab31 Promotes the Development of Diabetic Retinopathy

Xie, G.; Lv, P.; Li, M.; Kong, L.

10.1101/413443 — cell biology — Posted on 2018-09-10

1876 The role of BMP6 in the proliferation and differentiation of chicken cartilage cells

Ye, F.; Xu, H.; Yin, H.; Zhao, X.; Li, D.; Zhu, Q.; Wang, Y.

10.1101/413419 — cell biology — Posted on 2018-09-10

1877 Pituitary Carcinoma: The University of Texas MD Anderson Cancer Center Experience.

Santos-Pinheiro, F.; Penas-Prado, M.; Kamiya-Matsuoka, C.; Waguespack, S. G.; Mahajan, A.; Brown, P. D.; Shah, K. B.; Fuller, G. N.; McCutcheon, I. E.

10.1101/411132 — cancer biology — Posted on 2018-09-10

1878 Modular reconfiguration of an auditory-control brain network supports adaptive listening behavior

Alavash, M.; Tune, S.; Obleser, J.

10.1101/409797 — neuroscience — Posted on 2018-09-10

1879 Vitamin A supplement after neonatal Streptococcus pneumoniae pneumonia alters CD4+T cell subset and inhibits allergic asthma in mice model

Tian, Y.; Tian, Q.; Wu, Y.; Peng, X.; Chen, Y.; Li, Q.; Zhang, G.; Tian, X.; Ren, L.; Luo, Z.

10.1101/412940 — immunology — Posted on 2018-09-10

1880 The Histone Demethylase KDM4D Promotes Hepatic Fibrogenesis by Modulating Toll-Like Receptor 4 Signaling Pathway

Jiang, S.; Dong, F.; Li, J.; Wang, Y.; Zhu, L.-L.; Hu, X.; Huang, Y.; Jiang, X.; Zhou, Q.; Zhang, Z.; Bao, Z.

10.1101/413245 — cell biology — Posted on 2018-09-10

1881 Camouflaging of repetitive movements in autistic female and transgender adults

Wiskerke, J.; Stern, H.; Igelstrom, K.

10.1101/412619 — neuroscience — Posted on 2018-09-10

1882 Embryonic Exposure to Valproic Acid impairs Social Predispositions for Dynamic Cues of Animate Motion in Newly-Hatched Chicks

Lorenzi, E.; Pross, A.; Rosa-Salva, O.; Versace, E.; Sgado, P.; Vallortigara, G.

10.1101/412635 — neuroscience — Posted on 2018-09-10

1883 Brain correlates of action word memory

Shebani, Z.; Carota, F.; Hauk, O.; Rowe, J. B.; Barsalou, L. B.; Tomasello, R.; Pulvermuller, F.

10.1101/412676 — neuroscience — Posted on 2018-09-10

1884 Primary Target Prediction of Bioactive Molecules from Chemical Structure

Forouzesh, A.; Samadi Foroushani, S.; Forouzesh, F.; Zand, E.

10.1101/413237 — pharmacology and toxicology — Posted on 2018-09-10

1885 Automated EEG mega-analysis II: Cognitive aspects of event related features

Bigdely-Shamlo, N.; Touyran, J.; Ojeda, A.; Kothe, C.; Mullen, T.; Robbins, K.

10.1101/411371 — neuroscience — Posted on 2018-09-10

1886 Automated high-throughput high-content autophagy and mitophagy analysis platform

Arias-Fuenzalida, J.; Jarazo, J.; Walter, J.; Gomez-Giro, G.; Forster, J. I.; Antony, P. M.; Krueger, R.; Schwamborn, J. C.

10.1101/412957 — cell biology — Posted on 2018-09-10

1887 Money or smiles: Independent ERP effects of associated monetary reward and happy faces

Hammerschmidt, W.; Kulke, L.; Broering, C.; Schacht, A.

10.1101/325829 — neuroscience — Posted on 2018-09-10

1888 Transfer RNA Genes Affect Chromosome Structure and Function via Local Effects

Kamakaka, R. T.; Hamdani, O.; Dhillon, N.; Hsieh, T.-H. S.; Fujita, T.; Ocampo, J.; Kirkland, J. G.; Lawrimore, J.; Kobayashi, T. J.; Friedman, B.; Fulton, D.; Wu, K. Y.; Chereji, R. V.; Oki, M.; Bloom, K. S.; Clark, D.; Rando, O. J.

10.1101/412247 — molecular biology — Posted on 2018-09-10

1889 Early Pleistocene enamel proteome sequences from Dmanisi resolve Stephanorhinus phylogeny.

Cappellini, E.; Welker, F.; Pandolfi, L.; Ramos Madrigal, J.; Fotakis, A.; Lyon, D.; Moreno Mayar, V. L.; Bukhsianidze, M.; Rakownikow Jersie-Christensen, R.; Mackie, M.; Ginolhac, A.; Ferring, R.; Tappen, M.; Palkopoulou, E.; Samodova, D.; Ruther, P. L.; Dickinson, M. R.; Stafford, T.; Chan, Y. L.; Gotherstrom, A.; Nathan, S. K.; Heintzman, P. D.; Kapp, J. D.; Kirillova, I.; Moodley, Y.; Agusti, J.; Kahlke, R.-D.; Kiladze, G.; Martinez-Navarro, B.; Liu, S.; Sandoval Velasco, M.; Sinding, M.-H. S.; Kelstrup, C. D.; Allentoft, M. E.; Krogh, A.; Orlando, L.; Penkman, K.; Shapiro, B.; Rook, L.; D

10.1101/407692 — evolutionary biology — Posted on 2018-09-10

1890 Genetic correlation between sea age at maturity and iteroparity in Atlantic salmon.

Aykanat, T.; Ozerov, M.; Vaha, J.-P.; Orell, P.; Niemela, E.; Erkinaro, J.; Primmer, C. R.

10.1101/412288 — evolutionary biology — Posted on 2018-09-10

1891 Network analysis of canine brain morphometry links tumour risk to oestrogen deficiency and accelerated brain ageing

Rzechorzek, N. M.; Saunders, O. M.; Hiscox, L.; Schwarz, T.; Marioni-Henry, K.; Argyle, D. J.; Schoenebeck, J. J.; Freeman, T. C.

10.1101/412643 — neuroscience — Posted on 2018-09-10

1892 Dynamic Control of Ca2+ Binding in the C2 Domains of Synaptotagmin 1

Rock, P. J.; Meyer, A. G.; Evans, C. S.; Chapmin, E. R.; Sutton, R. B.

10.1101/412031 — bioinformatics — Posted on 2018-09-10

1893 Pan-genome-scale network reconstruction: a framework to increase the quantity and quality of metabolic network reconstructions throughout the tree of life

Correia, K.; Mahadevan, R.

10.1101/412593 — bioinformatics — Posted on 2018-09-10

1894 Identifying functional targets from transcription factor binding data using SNP perturbation

Xiang, J.; Kim, S.

10.1101/412841 — bioinformatics — Posted on 2018-09-10

1895 An explorable public transcriptomics compendium for eukaryotic microalgae

Ashworth, J.; Ralph, P. J.

10.1101/403063 — systems biology — Posted on 2018-09-10

1896 A tensile ring drives tissue flows to shape the gastrulating amniote embryo

Saadaoui, M.; Corson, F.; Rocancourt, D.; Roussel, J.; Gros, J.

10.1101/412767 — developmental biology — Posted on 2018-09-10

1897 Invadopodia degrade ECM in the G1 phase of the cell cycle

Bayarmagnai, B.; Perrin, L.; Esmaeili Pourfarhangi, K.; Gligorijevic, B.

10.1101/412916 — cancer biology — Posted on 2018-09-10

1898 The adequacy of tissue microarrays in the assessment of inter- and intra-tumoural heterogeneity of infiltrating lymphocyte burden in leiomyosarcoma

Lee, A. T.; Chew, W.; Smith, M. J.; Strauss, D. C.; Fisher, C.; Hayes, A. J.; Judson, I.; Thway, K.; Jones, R. L.; Huang, P. H.

10.1101/412387 — cancer biology — Posted on 2018-09-10

1899 FitHiChIP: Identification of significant chromatin contacts from HiChIP data

Bhattacharyya, S.; Chandra, V.; Vijayanand, P.; Ay, F.

10.1101/412833 — bioinformatics — Posted on 2018-09-10

1900 Revealing the critical regulators of cell identity in the mouse cell atlas

Suo, S.; Zhu, Q.; Saadatpour, A.; Fei, L.; Guo, G.; Yuan, G.-C.

10.1101/412742 — bioinformatics — Posted on 2018-09-10

1901 Learning Gene Networks Underlying Clinical Phenotypes Using SNP Perturbations

McCarter, C.; Howrylak, J.; Kim, S.

10.1101/412817 — bioinformatics — Posted on 2018-09-10

1902 Developing a unique medical-grade honey which maximizes glucose oxidase activity

Li, Z.; Parikh, R.

10.1101/411819 — biochemistry — Posted on 2018-09-10

1903 The emergence of dynamical instantaneous memory in the spontaneous activity of spatially confined neuronal assemblies in vitro

Piasetzky, Y.; Bisio, M.; Kanner, S.; Goldin, M.; Olivenboim, M.; Ben-Jacob, E.; Hanein, Y.; Chiappalone, M.; Barzilai, A.; Bonifazi, P.

10.1101/412320 — neuroscience — Posted on 2018-09-10

1904 Evolution of Replication Origins in Vertebrate Genomes: Rapid Turnover Despite Selective Constraints.

Massip, F.; Laurent, M.; Brossas, C.; Fernandez-Justel, J. M.; Gomez, M.; Prioleau, M.-N.; Duret, L.; Picard, F.

10.1101/411470 — evolutionary biology — Posted on 2018-09-10

1905 Large-scale analysis of redox-sensitive conditionally disordered protein regions reveal their widespread nature and key roles in high-level eukaryotic processes

Erdos, G.; Meszaros, B.; Reichmann, D.; Dosztanyi, Z.

10.1101/412692 — bioinformatics — Posted on 2018-09-10

1906 Management of Hsp90-Dependent Protein Folding by Small Molecule Targeting the Aha1 Co-Chaperone

Singh, J. K.; Tait, B.; Guy, N.; Sivils, J. C.; Culbertson, D.; Dickey, C.; Kuo, S. Y.; Gestwicki, J. E.; Hutt, D. M.; Dyson, J. H.; Cox, M. B.; Balch, W. E.

10.1101/412908 — biochemistry — Posted on 2018-09-10

1907 A data-driven approach to the automated study of cross-species homologies

Pauli, W. M.

10.1101/412114 — neuroscience — Posted on 2018-09-09

1908 The genetic architecture of the human cerebral cortex

Grasby, K. L.; Jahanshad, N.; Painter, J. N.; Colodro-Conde, L.; Bralten, J.; Hibar, D. P.; Lind, P. A.; Pizzagalli, F.; Ching, C. R.; McMahon, M. A.; Shatokhina, N.; Zsembik, L. C. P.; Agartz, I.; Alhusaini, S.; Almeida, M. A.; Alnaes, D.; Amlien, I. K.; Andersson, M.; Ard, T.; Armstrong, N. J.; Ashley-Koch, A.; Bernard, M.; Brouwer, R. M.; Buimer, E. E.; Bülow, R.; Bürger, C.; Cannon, D. M.; Chakravarty, M.; Chen, Q.; Cheung, J. W.; Couvy-Duchesne, B.; Dale, A. M.; Dalvie, S.; de Araujo, T. K.; de Zubicaray, G. I.; de Zwarte, S. M.; den Braber, A.; Doan, N. T.; Dohm, K.; Ehrlich, S.; Engel

10.1101/399402 — genetics — Posted on 2018-09-09

1909 Automated EEG mega-analysis I: Spectral and amplitude characteristics across studies

Bigdely-Shamlo, N.; Touryan, J.; Ojeda, A.; Kothe, C.; Mullen, T.; Robbins, K.

10.1101/409631 — neuroscience — Posted on 2018-09-09

1910 New genetic variants associated with major adverse cardiovascular events in patients with acute coronary syndromes and treated with clopidogrel and aspirin

Liu, X.; Xu, H.; Xu, H.; Geng, Q.; Mak, W.-H.; Ling, F.; Su, Z.; Yang, F.; Zhang, T.; Chen, J.; Yang, H.; Wang, J.; Zhang, X.; Xu, X.; Jia, H.; Zhang, Z.; Liu, X.; Zhong, S.

10.1101/411165 — genetics — Posted on 2018-09-09

1911 Distance-dependent consistency thresholds for generating group-representative structural brain networks

Betzel, R. F.; Griffa, A.; Hagmann, P.; Misic, B.

10.1101/412346 — neuroscience — Posted on 2018-09-09

1912 Context-dependent architecture of brain state dynamics is explained by white matter connectivity and theories of network control

Cornblath, E. J.; Ashourvan, A.; Kim, J. Z.; Betzel, R. F.; Ciric, R.; Baum, G. L.; He, X.; Ruparel, K.; Moore, T. M.; Gur, R. C.; Gur, R. E.; Shinohara, R. T.; Roalf, D. R.; Satterthwaite, T. D.; Bassett, D. S.

10.1101/412429 — neuroscience — Posted on 2018-09-09

1913 The CD56bright CD62L+ NKG2A+ immature cell subset is dominantly expanded in human cytokine-induced memory-like NK cells

Jin, J.; Ahn, Y.-O.; Kim, T. M.; Keam, B.; Kim, D.-W.; Heo, D. S.

10.1101/405134 — immunology — Posted on 2018-09-09

1914 Tracktor: image-based automated tracking of animal movement and behaviour

Sridhar, V. H.; Roche, D. G.; Gingins, S.

10.1101/412262 — animal behavior and cognition — Posted on 2018-09-09

1915 Prioritizing risk genes for neurodevelopmental disorders using pathway information

Nguyen, H. T.; Dobbyn, A.; Charney, A.; Bryois, J.; Skene, N. G.; Huckins, L. M.; Wang, W.; Ruderfer, D. M.; Xu, X.; Fromer, M.; Purcell, S. M.; Verhage, M.; Smit, A. B.; Hjerling-Leffler, J.; Buxbaum, J.; Pinto, D.; He, X.; Sullivan, P. F.; Stahl, E. A.

10.1101/410100 — genomics — Posted on 2018-09-09

1916 A tale of two species: Human perception influences outcome of human-wild life interactions

Paranjpe, D.; Dange, P.

10.1101/412254 — ecology — Posted on 2018-09-09

1917 Chemical signatures of honey bee group membership develop via a socially-modulated innate process

Vernier, C.; Krupp, J.; Marcus, K.; Hefetz, A.; Levine, J.; Ben-Shahar, Y.

10.1101/412353 — animal behavior and cognition — Posted on 2018-09-09

1918 Reduced Medial Frontal Positivity During the Stimulus-Response Interval Precedes Action Errors and Explains Task Deficits in Attention-Deficit Hyperactivity Disorder

Burwell, S. J.; Makeig, S.; Iacono, W. G.; Malone, S. M.

10.1101/412494 — neuroscience — Posted on 2018-09-09

1919 Macaque dorsal premotor cortex exhibits decision-related activity only when specific stimulus-response associations are known

Wang, M.; Montanede, C.; Chandrasekaran, C.; Peixoto, D.; Shenoy, K. V.; Kalaska, J. F.

10.1101/412528 — neuroscience — Posted on 2018-09-09

1920 The true size of placebo analgesia: Concordant neural and behavioural measures of placebo analgesia during experimental acute pain

Valentini, E.; Aglioti, S. M.; Chakrabarti, B.

10.1101/412296 — neuroscience — Posted on 2018-09-09

1921 Integrative analysis of Zika virus genome RNA structure reveals critical determinants of viral infectivity

Zhang, Q. C.; Li, P.; Wei, Y.; Mei, M.; Tang, L.; Sun, L.; Huang, W.; Zhou, J.; Zou, C.; Zhang, S.; Qin, C.; Jiang, T.; Dai, J.; Tan, X.

10.1101/412577 — molecular biology — Posted on 2018-09-09

1922 Diversity and composition of cave methanotrophic communities

Webster, K. D.; Schimmelmann, A.; Drobniak, A.; Mastalerz, M.; Rosales Lagarde, L.; Boston, P. J.; Lennon, J. T.

10.1101/412213 — microbiology — Posted on 2018-09-09

1923 Genome-wide selection footprints and deleterious variations in young Asian allotetraploid rapeseed

Zou, J.; Mao, L.; Qiu, J.; Wang, M.; He, Z.; Jia, L.; Wu, D.; Huang, Y.; Chen, M.; Shen, Y.; Shen, E.; Li, R.; Hu, D.; Wang, K.; Shi, L.; Ye, C.; Bancroft, I.; King, G.; Meng, J.; Fan, L.

10.1101/412551 — genomics — Posted on 2018-09-09

1924 Towards a \"Treadmill Test\" for Cognition: Reliable Prediction of Intelligence From Whole-Brain Task Activation Patterns

Sripada, C.; Angstadt, M.; Rutherford, S.

10.1101/412056 — neuroscience — Posted on 2018-09-09

1925 The Helicobacter pylori biofilm involves a multi-gene stress-biased response including a structural role for flagella

Hathroubi, S.; Zerebinski, J.; Ottemann, K. M.

10.1101/412239 — microbiology — Posted on 2018-09-09

1926 Natural selection of glycoprotein B (gB) mutations that rescue the small plaque phenotype of a fusion-impaired herpes simplex virus (HSV) mutant

Fan, Q.; Kopp, S. J.; Byskosh, N. C.; Connolly, S. A.; Longnecker, R.

10.1101/412221 — microbiology — Posted on 2018-09-09

1927 Comparative Performance of the Finite Element Method and the Boundary Element Fast Multipole Method for a Test Problem Mimicking Transcranial Magnetic Stimulation (TMS)

Htet, A. T.; Saturnino, G. B.; Burnham, E. H.; Makarov, S. N.

10.1101/411082 — bioengineering — Posted on 2018-09-09

1928 Active control of arousal by a locus coeruleus GABAergic circuit

Breton-Provencher, V.; Sur, M.

10.1101/412338 — neuroscience — Posted on 2018-09-09

1929 Influenza incidence prediction for the United States: an update for the 2018-2019 season

Du, X.; Peng, Y.; Liu, M.; Pascual, M.

10.1101/411348 — bioinformatics — Posted on 2018-09-09

1930 Statistical Model of Motor Evoked Potentials for Simulation of Transcranial Magnetic and Electric Stimulation

Goetz, S. M.; Mahdi Alavi, S. M.; Deng, Z.-D.; Peterchev, A. V.

10.1101/406777 — physiology — Posted on 2018-09-09

1931 Excess of rare missense variants in hearing loss genes in sporadic Meniere disease

Gallego-Martinez, A.; Requena, T.; Roman-Naranjo, P.; Lopez-Escamez, J. A.

10.1101/393322 — genomics — Posted on 2018-09-09

1932 Ancestral Reconstruction of Protein Interaction Networks

Liebeskind, B.; Aldrich, R. W.; Marcotte, E. M.

10.1101/408773 — evolutionary biology — Posted on 2018-09-09

1933 Cross-talk between the receptor tyrosine kinases AXL and ERBB3 regulates invadopodia formation in melanoma cells

Revach, O.-Y.; Sandler, O.; Samuels, Y.; Geiger, B.

10.1101/412379 — cancer biology — Posted on 2018-09-09

1934 Collective decision making by rational individuals

Mann, R. P.

10.1101/363838 — animal behavior and cognition — Posted on 2018-09-09

1935 Coherent chaos in a recurrent neural network with structured connectivity

Landau, I. D.; Sompolinsky, H.

10.1101/350801 — neuroscience — Posted on 2018-09-09

1936 Evidence of functional long-range Wnt/Wg in the developing Drosophila wing epithelium

Chaudhary, V.; Boutros, M.

10.1101/412627 — developmental biology — Posted on 2018-09-09

1937 Regulation of Cell-Type-Specific Transcriptomes by miRNA Networks During Human Brain Development

Nowakowski, T. J.; Rani, N.; Golkaram, M.; Zhou, H. R.; Alvarado, B.; Huch, K.; West, J.; Leyrat, A.; Pollen, A. A.; Kriegstein, A. R.; Petzold, L. R.; Kosik, K. S.

10.1101/412510 — developmental biology — Posted on 2018-09-09

1938 MiR-16-1* and miR-16-2* possess strong tumor suppressive and anti-metastatic properties in osteosarcoma.

Maximov, V. V.; Khawaled, S.; Salah, Z.; Jaber, L.; Bengaiev, N.; Barhoum, A.; Galasso, M.; Yavin, E.; Aqeilan, R. I.

10.1101/412411 — cancer biology — Posted on 2018-09-09

1939 A Neurodevelopmental Disorder Caused by Mutations in the VPS51 Subunit of the GARP and EARP Complexes

Gershlick, D. C.; Ishida, M.; Jones, J. R.; Bellomo, A.; Bonifacino, J. S.; Everman, D. B.

10.1101/409441 — cell biology — Posted on 2018-09-09

1940 Translation of upstream open reading frames in a model of neuronal differentiation

Rodriguez, C. M.; Chun, S. Y.; Mills, R. E.; Todd, P. K.

10.1101/412106 — molecular biology — Posted on 2018-09-09

1941 Spatial Gradient of Microstructural Changes in Normal-Appearing White Matter in Tracts Affected by White Matter Hyperintensities in Older Age

Munoz Maniega, S.; Meijboom, R.; Chappell, F. M.; Valdes Hernandez, M. M.; Starr, J. M.; Bastin, M. E.; Deary, I. J.; Wardlaw, J. M.

10.1101/412064 — neuroscience — Posted on 2018-09-09

1942 Male-Specific Protein Disulphide Isomerase Function is Essential for Plasmodium Fertilization and Transmission

Angrisano, F.; Sala, K. A.; Tapanelli, S.; Christophides, G. K.; Blagborough, A. M.

10.1101/411926 — microbiology — Posted on 2018-09-09

1943 HLA-DQA1*05 is associated with the development of antibodies to anti-TNF therapy

Sazonovs, A.; Kennedy, N.; Moutsianas, L.; Heap, G. A.; Rice, D. L.; Reppell, M.; Bewshea, C.; Walker, G.; Perry, M.; McDonald, T. J.; Lees, C.; Cummings, F.; Parkes, M.; Mansfield, J.; Barrett, J. C.; McGovern, D.; Goodhand, J.; Anderson, C. A.; Ahmad, T.; PANTS consortium,

10.1101/410035 — genomics — Posted on 2018-09-09

1944 Potential application of phage therapy for prophylactic treatment against Pseudomonas aeruginosa biofilm Infections.

Gurkar, A.; Balasubramanian, D.; Manur, J.; Mathee, K.

10.1101/404145 — microbiology — Posted on 2018-09-09

1945 Extraction-Free Whole Transcriptome Gene Expression Analysis of FFPE Sections and Histology-Directed Subareas of Tissue

Trejo, C. L.; Babic, M.; Imler, E.; Gonzalez, M.; Bibikov, S.; Shepard, P. J.; VanSteenhouse, H. C.; Yeakley, J. M.; Seligmann, B. E.

10.1101/412015 — genomics — Posted on 2018-09-09

1946 Hydrodynamics of the frontal strike in aquatic snakes: drag, added mass and the possible consequences for prey capture success.

Segall, M.; Herrel, A.; Godoy-Diana, R.

10.1101/411850 — biophysics — Posted on 2018-09-09

1947 The left midfusiform gyrus interacts with early visual cortex and the anterior temporal lobe to support word individuation.

Boring, M. J.; Hirshorn, E. A.; Li, Y.; Ward, M. J.; Richardson, R. M.; Fiez, J. A.; Ghuman, A. S.

10.1101/411579 — neuroscience — Posted on 2018-09-09

1948 A data-driven approach to the automated study of cross-species homologies

Pauli, W. M.

10.1101/412114 — neuroscience — Posted on 2018-09-09

1949 Music reveals medial prefrontal cortex sensitive period in childhood

Gabard-Durnam, L. J.; Hensch, T.; Tottenham, N.

10.1101/412007 — neuroscience — Posted on 2018-09-09

1950 Evolution of the highly repetitive PEVK region of titin across mammals

Muenzen, K.; Monroy, J.; Finseth, F. R.

10.1101/411959 — genomics — Posted on 2018-09-09

1951 Genes of the Pig, Sus scrofa, reconstructed with Evidential Gene

Gilbert, D. G.

10.1101/412130 — genomics — Posted on 2018-09-09

1952 Genetic Determinants of Cortical Structure (Thickness, Surface Area and Volumes) among Disease Free Adults in the CHARGE Consortium

Hofer, E.; Roshchupkin, G. V.; Adams, H.; Knol, M.; Lin, H.; Li, S.; Zare, H.; Ahmad, S.; Armstrong, N.; Satizabal, C.; Bernard, M.; Bis, J.; Gillespie, N.; Luciano, M.; Mishra, A.; Scholz, M.; Teumer, A.; Xia, R.; Jian, X.; Mosley, T.; Saba, Y.; Pirpamer, L.; Seiler, S.; Becker, J.; Carmichael, O.; Rotter, J.; Psaty, B.; Lopez, O.; Amin, N.; Lee, S.; Yang, Q.; Himali, J.; Maillard, P.; Beiser, A.; DeCarli, C.; Karama, S.; Lewis, L.; Bastin, M.; Harris, M.; Deary, I.; Witte, V.; Beyer, F.; Loeffler, M.; Mather, K.; Schofield, P.; Thalamuthu, A.; Kwok, J.; Wright, M.; Ames, D.; Trollor, J.; Jia

10.1101/409649 — genetics — Posted on 2018-09-09

1953 Evidence of causal effect of major depression on alcohol dependence: Findings from the Psychiatric Genomics Consortium

Polimanti, R.; Peterson, R. E.; Ong, J. S.; Macgregor, S.; Edwards, A.; Clarke, T.-K.; Frank, J.; Gerring, Z.; Gillespie, N. A.; Lind, P. A.; Maes, H. H.; Martin, N. G.; Mbarek, H.; Medland, S. E.; Streit, F.; Major Depressive Disorder Working Group of the Psychiatric Genomics Consortium, ; Substance Use Disorder Working Group of the Psychiatric Genomics Consortium, ; 23andMe Research Team, ; Agrawal, A.; Edenberg, H. J.; Kendler, K. S.; Lewis, C. M.; Sullivan, P. F.; Wray, N. R.; Gelernter, J.; Derks, E. M.

10.1101/412098 — genetics — Posted on 2018-09-09

1954 Limited significance of the in situ proximity ligation assay

Aslemarz, A.; Lasko, P.; Fagotto, F.

10.1101/411355 — cell biology — Posted on 2018-09-09

1955 CARDIOMETABOLIC RECOVERY AND LACTATE REMOVAL MAY BE RELATED TO MUSCULAR ADAPTATIONS

Meza, E. I. A.; de-Oliveira, G. L.; Perini-de-Oliveira, T. A.; Moreira, M. H.; Militao, A. G.; Fernandes-Filho, J.; Furtado-da-Silva, V.; Dantas, E. H. M.; Valentim-Silva, J. R.

10.1101/402511 — physiology — Posted on 2018-09-09

1956 The N-end Rule Pathway and Ubr1 enforce protein compartmentalization via N-terminally-encoded cellular location signals

Tran, A.

10.1101/392373 — cell biology — Posted on 2018-09-08

1957 Epigenomic Profiling and Single-Nucleus-RNA-Seq Reveal Cis-Regulatory Elements in Human Retina, Macula and RPE and Non-Coding Genetic Variation.

Cherry, T. J.; Yang, M. G.; Harmin, D. A.; Tao, P.; Timms, A. E.; Bauwens, M.; Allikmets, R.; Jones, E. M.; Chen, R.; DeBaere, E.; Greenberg, M. E.

10.1101/412361 — neuroscience — Posted on 2018-09-08

1958 RNA-seq analyses of molecular abundance (RoMA) for detecting differential gene expression

Cai, G.; Franks, J. M.; Whitfield, M. L.

10.1101/410985 — bioinformatics — Posted on 2018-09-08

1959 CellHarmony: Cell-level matching and comparison of single-cell transcriptomes

DePasquale, E. A.; Ferchen, K.; Hay, S.; Muench, D. E.; Grimes, H. L.; Salomonis, N.

10.1101/412080 — bioinformatics — Posted on 2018-09-08

1960 Three-dimensional tissue stiffness mapping in the mouse embryo supports durotaxis during early limb bud morphogenesis

Zhu, M.; Tao, H.; Samani, M.; Luo, M.; Wang, X.; Hopyan, S.; Sun, Y.

10.1101/412072 — developmental biology — Posted on 2018-09-08

1961 DNMT inhibitors increase methylation of CpGs related to p53 pathway genes in colon, lymphoma, bladder, ovarian, and breast cancer cells

Giri, A. K.; Aittokallio, T.

10.1101/395467 — pharmacology and toxicology — Posted on 2018-09-08

1962 Enabling tools for Toxoplasma glycobiology

Gas-Pascual, E.; Ichikawa, H. T.; Sheikh, M. O.; Serji, M. I.; Deng, B.; Mandalasi, M.; Bandini, G.; Samuelson, J.; Wells, L.; West, C. M.

10.1101/401828 — microbiology — Posted on 2018-09-08

1963 Molecular safeguarding of CRISPR gene drive experiments

Champer, J.; Chung, J.; Lee, Y. L.; Liu, C.; Yang, E.; Wen, Z.; Clark, A. G.; Messer, P. W.

10.1101/411876 — genetics — Posted on 2018-09-08

1964 Interpretable Convolution Methods for Learning Genomic Sequence Motifs

Ploenzke, M. S.; Irizarry, R. A.

10.1101/411934 — bioinformatics — Posted on 2018-09-08

1965 The atypical thiol-disulfide exchange protein α-DsbA2 from Wolbachia pipientis is a homotrimeric disulfide isomerase

Walden, P. M.; Whitten, A. E.; Lakshmanane, P.; Halili, M.; Heras, B.; King, G.; Martin, J. L.

10.1101/412205 — biochemistry — Posted on 2018-09-08

1966 Genome-wide association studies in Samoans give insight into the genetic etiology of fasting serum lipid levels.

Carlson, J.; Weeks, D.; Hawley, N. L.; Sun, G.; Chen, H.; Naseri, T.; Reupena, M. S.; Deka, R.; McGarvey, S. T.; Minster, R. L.

10.1101/411546 — genetics — Posted on 2018-09-08

1967 Preserved cortical maps of the body in Complex Regional Pain Syndrome

Mancini, F.; Wang, A. P.; Shira, M. M.; Isherwood, Z. J.; McAuley, J. H.; Iannetti, G.; Sereno, M. I.; Moseley, L.; Rae, C. D.

10.1101/409094 — neuroscience — Posted on 2018-09-08

1968 A cell atlas of the adult Drosophila midgut

Hung, R.-J.; Hu, Y.; Kirchner, R.; Li, F.; Xu, C.; Comjean, A.; Tattikota, S. G.; Song, W. R.; Sui, S. H.; Perrimon, N.

10.1101/410423 — genetics — Posted on 2018-09-08

1969 MAPS: model-based analysis of long-range chromatin interactions from PLAC-seq and HiChIP experiments

Juric, I.; Yu, M.; Abnousi, A.; Raviram, R.; Fang, R.; Zhao, Y.; Zhang, Y.; Yang, Y.; Li, Y.; Ren, B.; Hu, M.

10.1101/411835 — bioinformatics — Posted on 2018-09-08

1970 Inhibition of Mycobacterium tuberculosis DosRST two-component regulatory system signaling by targeting response regulator DNA binding and sensor kinase heme

Zheng, H.; Aleiwi, B.; Ellsworth, E.; Abramovitch, R. B.

10.1101/411793 — microbiology — Posted on 2018-09-08

1971 Late-life mortality plateaus through error, not evolution

Newman, S. J.

10.1101/410134 — evolutionary biology — Posted on 2018-09-08

1972 Chromatin-loop extrusion and chromatin unknotting

Racko, D.; Benedetti, F.; Goundaroulis, D.; Stasiak, A.

10.1101/411629 — biophysics — Posted on 2018-09-08

1973 Identifying Representative Network Motifs for Inferring Higher-order Structure of Biological Networks

Wang, T.; Peng, J.; Wang, Y.; Chen, J.

10.1101/411520 — bioinformatics — Posted on 2018-09-08

1974 DETECTION OF Wolbachia IN FIELD-COLLECTED MOSQUITO VECTOR, Aedes aegypti

Carvajal, T.; Hashimoto, K.; Harnandika, R. K.; Amalin, D.; Watanabe, K.

10.1101/408856 — microbiology — Posted on 2018-09-08

1975 Beyond Bonferroni Revisited: Concerns over inflated false positives in conservation genetics, genetics, and neuroscience

White, T.; van der Ende, J.; Nichols, T.

10.1101/408997 — genetics — Posted on 2018-09-08

1976 Accounting for individual-specific variation in habitat-selection studies: Efficient estimation of mixed-effects models using Bayesian or frequentist computation

Muff, S.; Signer, J.; Fieberg, J.

10.1101/411801 — ecology — Posted on 2018-09-08

1977 Late greenhouse gas mitigation has heterogeneous effects on European caddisfly diversity patterns

Januchowski-Hartley, S. R.; Lauzeral, C.; Schmidt-Kloiber, A.; Graf, W.; Brosse, S.

10.1101/411462 — ecology — Posted on 2018-09-08

1978 Analysis of biological record data: improvements of the occupancy-detection models

LI, S.

10.1101/408724 — ecology — Posted on 2018-09-08

1979 Optimal features for auditory categorization

Liu, S. T.; Wang, X.; Sadagopan, S.

10.1101/411611 — neuroscience — Posted on 2018-09-08

1980 A wrappable microwire electrode for awake, chronic interfacing with small diameter autonomic peripheral nerves

Falcone, J. D.; Liu, T.; Goldman, L.; Pogue, D. D.; Straka, M.; Rieth, L. W.; Bouton, C. E.; Sohal, H. S.

10.1101/402925 — bioengineering — Posted on 2018-09-08

1981 Quantification of protein mobility and associated reshuffling of cytoplasm during chemical fixation

Huebinger, J.; Spindler, J.; Holl, K. J.; Koos, B.

10.1101/410670 — cell biology — Posted on 2018-09-08

1982 The loss of V0-ATPase induces Microvillus inclusion-like disease in C. elegans

Bidaud-Meynard, A.; Nicolle, O.; Heck, M.; Michaux, G.

10.1101/412122 — cell biology — Posted on 2018-09-08

1983 The novel lncRNA lnc-NR2F1 is pro-neurogenic and mutated in human neurodevelopmental disorders

Ang, C. E.; Ma, Q.; Wapinski, O.; Fan, S.; Flynn, R. A.; Coe, B.; Onoguchi, M.; Olmos, V. H.; Do, B. T.; Dukes-Rimsky, L.; Xu, J.; Lee, Q. Y.; Tanabe, K.; Wang, L.; Elling, U.; Penninger, J.; Qu, K.; Eichler, E. E.; Srivastava, A.; Wernig, M.; Chang, H.

10.1101/410837 — neuroscience — Posted on 2018-09-08

1984 Alzheimer’s disease Phospholipase C-gamma-2 (PLCG2) protective variant is a functional hypermorph

Magno, L.; Lessard, C. B.; Martins, M.; Cruz, P.; Katan, M.; Bilsland, J.; Chakrabaty, P.; Golde, T. E.; Whiting, P.

10.1101/409706 — neuroscience — Posted on 2018-09-08

1985 Regulation of KIF1A motility via polyglutamylation of tubulin C-terminal tails

Lessard, D. V.; Zinder, O. J.; Hotta, T.; Verhey, K. J.; Ohi, R.; Berger, C. L.

10.1101/410860 — biophysics — Posted on 2018-09-08

1986 A low-cost biological agglutination assay for medical diagnostic applications

Kylilis, N.; Riangrungroj, P.; Lai, H.-E.; Salema, V.; Fernandez, L. A.; Stan, G.-B.; Freemont, P.; Polizzi, K.

10.1101/411637 — synthetic biology — Posted on 2018-09-08

1987 Deconstructing cell-free extract preparation for in vitro activation of transcriptional genetic circuitry

Silverman, A. D.; Kelley-Loughnane, N.; Lucks, J. B.; Jewett, M. C.

10.1101/411785 — synthetic biology — Posted on 2018-09-08

1988 Rapid responses of winter aphid-parasitoid communities to climate warming

Tougeron, K.; Damien, M.; Le Lann, C.; Brodeur, J.; van Baaren, J.

10.1101/411975 — ecology — Posted on 2018-09-08

1989 OLIVER: A Tool for Visual Data Analysis on Longitudinal Plant Phenomics Data

Tessmer, O. L.; Kramer, D. M.; Chen, J.

10.1101/411595 — bioinformatics — Posted on 2018-09-08

1990 Transcriptomic analyses reveal groups of co-expressed, syntenic lncRNAs in four species of the genus Caenorhabditis

Pegueroles, C.; Iraola-Guzman, S.; Chorostecki, U. P.; Ksiezopolska, E.; Saus, E.; Gabaldon, T.

10.1101/411561 — evolutionary biology — Posted on 2018-09-08

1991 No cell is an island: circulating T cell:monocyte complexes are markers of immune perturbations

Burel, J. G.; Pomaznoy, M.; Lindestam Arlehamn, C. S.; Weiskopf, D.; da Silva Antunes, R.; Schulten, V.; Babor, M.; Seumois, G.; Greenbaum, J. A.; Premawansa, S.; Premawansa, G.; Wijewickrama, A.; Tippalagama, R.; deSilva, A. D.; Gilman, R. H.; Saito, M.; Taplitz, R.; Vijayanand, P.; Sette, A.; Peters, B.

10.1101/411553 — immunology — Posted on 2018-09-07

1992 Fast and flexible linear mixed models for genome-wide genetics

Runcie, D. E.; Crawford, L.

10.1101/373902 — genomics — Posted on 2018-09-07

1993 An interactive programming paradigm for realtime experimentation with remote living matter

Washington, P.; Samuel-Gama, K.; Goyal, S.; Ramaswami, A.; Riedel-Kruse, I. H.

10.1101/236919 — bioengineering — Posted on 2018-09-07

1994 Pan-cancer analysis of whole genomes reveals driver rearrangements promoted by LINE-1 retrotransposition in human tumours

Rodriguez-Martin, B.; Alvarez, E. G.; Baez-Ortega, A.; Zamora, J.; Supek, F.; Demeulemeester, J.; Santamarina, M.; Ju, Y. S.; Temes, J.; Garcia-Souto, D.; Detering, H.; Li, Y.; Rodriguez-Castro, J.; Dueso-Barroso, A.; Bruzos, A. L.; Dentro, S. C.; Blanco, M. G.; Contino, G.; Ardeljan, D.; Tojo, M.; Roberts, N. D.; Zumalave, S.; Edwards, P. A. W.; Weischenfeldt, J.; Puiggros, M.; Chong, Z.; Chen, K.; Lee, E. A.; Wala, J. A.; Raine, K.; Butler, A.; Waszak, S. M.; Navarro, F. C. P.; Schumacher, S. E.; Monlong, J.; Maura, F.; Bolli, N.; Bourque, G.; Gerstein, M.; Park, P. J.; Wedge, D.; Berroukhim

10.1101/179705 — genomics — Posted on 2018-09-07

1995 FGF1 Promotes Xenopus laevis Lens Regeneration

Moore, L.; Perry, K. J.; Sun, C.; Henry, J. J.

10.1101/411991 — developmental biology — Posted on 2018-09-07

1996 How is experience transformed into memory?

Heusser, A. C.; Fitzpatrick, P. C.; Manning, J. R.

10.1101/409987 — neuroscience — Posted on 2018-09-07

1997 Neuronal firing rates diverge during REM and homogenize during non-REM

Miyawaki, H.; Watson, B.; Diba, K.

10.1101/069237 — neuroscience — Posted on 2018-09-07

1998 Resource limitation modulates the fate of dissimilated nitrogen in a dual-pathway Actinobacterium

Vuono, D. C.; Read, R. W.; Hemp, J.; Sullivan, B. W.; Arnone, J. A.; Neveux, I.; Blank, B.; Staub, C.; Loney, E.; Miceli, D.; Winkler, M.; Chakraborty, R.; Stahl, D. A.; Grzymski, J. J.

10.1101/364331 — microbiology — Posted on 2018-09-07

1999 Fast and flexible linear mixed models for genome-wide genetics

Runcie, D. E.; Crawford, L.

10.1101/373902 — genomics — Posted on 2018-09-07

2000 Genetic effects on promoter usage are highly context-specific and contribute to complex traits

Alasoo, K.; Rodrigues, J.; Danesh, J.; Freitag, D. F.; Paul, D. S.; Gaffney, D. J.

10.1101/319806 — genomics — Posted on 2018-09-07

2001 Some generic measures of the extent of chemical disequilibrium applied to living and abiotic systems

Intoy, B. F.; Halley, J. W.

10.1101/327783 — biophysics — Posted on 2018-09-07

2002 Decomposing spatially dependent and cell type specific contributions to cellular heterogeneity

Zhu, Q.; Shah, S.; Dries, R.; Cai, L.; Yuan, G.-C.

10.1101/275156 — bioinformatics — Posted on 2018-09-07

2003 New cheloniellid arthropod with large raptorial appendages from the Silurian of Wisconsin, USA

Wendruff, A. J.; Babcock, L.; Mikulic, D.; Kluessendorf, J.

10.1101/407379 — paleontology — Posted on 2018-09-07

2004 Life Inside A Dinosaur Bone: A Thriving Microbiome

Saitta, E. T.; Liang, R.; Lau, C. Y.; Brown, C. M.; Longrich, N. R.; Kaye, T. G.; Novak, B. J.; Salzberg, S.; Donohoe, P.; Dickinson, M.; Vinther, J.; Bull, I. D.; Brooker, R. A.; Martin, P.; Abbott, G. D.; Knowles, T. D.; Penkman, K.; Onstott, T. C.

10.1101/400176 — paleontology — Posted on 2018-09-07

2005 Characterization of osteoarthritis phenotypes by global metabolomic profiling of human synovial fluid

Carlson, A. K.; Rawle, R. A.; Wallace, C. W.; Brooks, E. G.; Adams, E.; Greenwood, M. C.; Olmer, M.; Lotz, M.; Bothner, B.; June, R.

10.1101/395020 — pathology — Posted on 2018-09-07

2006 Flow stimuli reveal ecologically-appropriate responses in mouse visual cortex

Dyballa, L.; Hoseini, M. S.; Dadarlat, M. C.; Zucker, S. W.; Stryker, M. P.

10.1101/362459 — neuroscience — Posted on 2018-09-07

2007 A majority of HIV persistence during antiretroviral therapy is due to infected cell proliferation

Reeves, D. B.; Duke, E. R.; Wagner, T. A.; Palmer, S. E.; Spivak, A. M.; Schiffer, J. T.

10.1101/146977 — immunology — Posted on 2018-09-07

2008 New cheloniellid arthropod with large raptorial appendages from the Silurian of Wisconsin, USA

Wendruff, A. J.; Babcock, L.; Mikulic, D.; Kluessendorf, J.

10.1101/407379 — paleontology — Posted on 2018-09-07

2009 Dopaminergic and frontal signals for decisions guided by sensory evidence and reward value

Lak, A.; Okun, M.; Moss, M.; Gurnani, H.; Wells, M. J.; Reddy, C. B.; Harris, K. D.; Carandini, M.

10.1101/411413 — neuroscience — Posted on 2018-09-07

2010 Understanding policing as a mechanism of cheater control in cooperating bacteria

Wechsler, T.; Kuemmerli, R.; Dobay, A.

10.1101/267799 — evolutionary biology — Posted on 2018-09-07

2011 Dazl regulates germ cell survival through a network of polyA proximal mRNA interactions

Zagore, L. L.; Sweet, T. J.; Hannigan, M. M.; Weyn-Vanhentenryck, S. M.; Jobava, R.; Hatzoglou, M.; Zhang, C.; Licatalosi, D. D.

10.1101/273292 — molecular biology — Posted on 2018-09-07

2012 Patterns of reduced cortical thickness and striatum pathological morphology in cocaine addiction.

Garza-Villarreal, E. A.; Alcala, R.; Balducci, T.; Angeles-Valdez, D.; Chakravarty, M.; Devenyi, G. A.; Gonzalez-Olvera, J. J.

10.1101/306068 — neuroscience — Posted on 2018-09-07

2013 Prot-SpaM: Fast alignment-free phylogeny reconstruction based on whole-proteome sequences

Leimeister, C.-A.; Schellhorn, J.; Schöbel, S.; Gerth, M.; Bleidorn, C.; Morgenstern, B.

10.1101/306142 — bioinformatics — Posted on 2018-09-07

2014 Zfp189 Mediates Stress Resilience Through a CREB-Regulated Transcriptional Network in Prefrontal Cortex

Lorsch, Z. S.; Hamilton, P. J.; Ramakrishnan, A.; Parise, E. M.; Wright, W. J.; Salery, M.; Lepack, A.; Mews, P.; Issler, O.; McKenzie, A.; Zhou, X.; Parise, L. F.; Pirpinias, S. T.; Ortiz Torres, I.; Montgomery, S.; Loh, Y.-H. E.; Labonte, B.; Conkey, A.; Symonds, A. E.; Neve, R.; Turecki, G.; Maze, I.; Dong, Y.; Zhang, B.; Shen, L.; Bagot, R. C.; Nestler, E. J.

10.1101/403733 — neuroscience — Posted on 2018-09-07

2015 Identifying incident dementia by applying machine learning to a very large administrative claims dataset

Nori, V. S.; Hane, C. A.; Martin, D. C.; Kravetz, A. D.; Sanghavi, D. M.

10.1101/396127 — bioinformatics — Posted on 2018-09-07

2016 Simultaneous single-channel multiplex and quantification of carbapenem-resistant genes using multidimensional standard curves

Rodriguez-Manzano, J.; Moniri, A.; Malpartida-Cardenas, K.; Dronavalli, J.; Davies, F.; Holmes, A.; Georgiou, P.

10.1101/409912 — microbiology — Posted on 2018-09-07

2017 SimulateCNVs: a novel software application for simulating CNVs in WES and WGS data

Xing, Y.; Dabney, A. R.; Li, X.; Casola, C.

10.1101/407486 — bioinformatics — Posted on 2018-09-07

2018 Applicability of Drug Response Metrics for Cancer Studies using Biomaterials

Brooks, E. A.; Galarza, S.; Gencoglu, M. F.; Cornelison, R. C.; Munson, J. M.; Peyton, S.

10.1101/408583 — bioengineering — Posted on 2018-09-07

2019 Risky home with easy food: Denning of a generalistic and widely distributed carnivore red fox

Reshamwala, H. S.; Mahar, N.; Dirzo, R.; Habib, B.

10.1101/411686 — ecology — Posted on 2018-09-07

2020 White Spot Syndrome Virus and the Caribbean Spiny Lobster, Panulirus argus: Susceptibility and Behavioral Immunity

Ross, E.; Behringer, D. C.; Bojko, J.

10.1101/411769 — ecology — Posted on 2018-09-07

2021 Imaging breast cancer using a dual-ligand nanochain particle

Covarrubias, G.; Cha, A.; Rahmy, A.; Lorkowski, M.; Perera, V.; Erokwu, B. O.; Flask, C.; Peiris, P. M.; Schiemann, W. P.; Karathanasis, E.

10.1101/411728 — bioengineering — Posted on 2018-09-07

2022 Computational mechanisms of curiosity and goal-directed exploration

Schwartenbeck, P.; Passecker, J.; Hauser, T.; FitzGerald, T. H. B.; Kronbichler, M.; Friston, K. J.

10.1101/411272 — neuroscience — Posted on 2018-09-07

2023 Rodent-borne bacterial infections in Gwangju, Korea

Bang, M.-S.; Kim, C.-M.; Kim, D.-M.; Yun, N. R.

10.1101/411736 — microbiology — Posted on 2018-09-07

2024 Resting-state functional connectivity, cortical GABA and neuroactive steroids in peripartum and peripartum depressed women: a functional magnetic imaging and resonance study

Deligiannidis, K. M.; Fales, C. L.; Kroll-Desrosiers, A. R.; Shaffer, S. A.; Villamarin, V.; Tan, Y.; Hall, J. E.; Frederick, B. B.; Sikoglu, E. M.; Edden, R. A.; Rothschild, A. J.; Moore, C. M.

10.1101/411405 — neuroscience — Posted on 2018-09-07

2025 Aspirin treatment does not increase microhemorrhage size in young or aged mice

Chan, S.; Brophy, M.; Nishimura, N.; Schaffer, C. B.

10.1101/411710 — neuroscience — Posted on 2018-09-07

2026 Enhancing the cell-free expression of native membrane proteins by in-silico optimization of the coding sequence - an experimental study of the human voltage-dependent anion channel

Zayni, S.; Damiati, S.; Moreno-Flores, S.; Amman, F.; Hofacker, I.; Ehmoser, E. K.

10.1101/411694 — molecular biology — Posted on 2018-09-07

2027 In vitro and intracellular activity of imipenem combined with tedizolid, rifabutin, and avibactam against Mycobacterium abscessus

Le Run, E.; Arthur, M.; Mainardi, J.-l.

10.1101/411181 — microbiology — Posted on 2018-09-07

2028 Haplotype Analysis of the TRB Locus by TCRB Repertoire Sequencing

Looney, T.; Duose, D. Y.; Lowman, G.; Linch, E.; Hajjar, J.; Topacio-Hall, D.; Xu, M.; Zheng, J.; Alshawa, A.; Tapia, C.; Stephen, B. A.; Wang, L.; Meric-Bernstam, F.; Miller, L.; Glavin, A.; Lin, L.; Gong, J.; Conroy, J.; Morrison, C.; Hyland, F.; Naing, A.

10.1101/406157 — immunology — Posted on 2018-09-07

2029 Characterising antibody kinetics from multiple influenza infection and vaccination events in ferrets

Hay, J.; Laurie, K.; White, M.; Riley, S.

10.1101/411751 — immunology — Posted on 2018-09-07

2030 Genome-wide identification and expression specificity analysis of the DNA methyltransferase gene family under adversity stresses in cotton

Yang, X.; Ye, W.; Lu, X.; Chen, X.; Wang, D.; Wang, J.; Wang, S.; Guo, L.; Chen, C.; Zhang, B.; Wang, X.; Han, M.

10.1101/411652 — genomics — Posted on 2018-09-07

2031 Tau filaments from multiple cases of sporadic and inherited Alzheimer’s disease adopt a common fold

Falcon, B.; Zhang, W.; Schweighauser, M.; Murzin, A. G.; Vidal, R.; Garringer, H. J.; Ghetti, B.; Scheres, S.; Goedert, M.

10.1101/411215 — neuroscience — Posted on 2018-09-07

2032 Dopaminergic and frontal signals for decisions guided by sensory evidence and reward value

Lak, A.; Okun, M.; Moss, M.; Gurnani, H.; Wells, M. J.; Reddy, C. B.; Harris, K. D.; Carandini, M.

10.1101/411413 — neuroscience — Posted on 2018-09-07

2033 Neuroanatomical correlates of food addiction and obesity in the general population

Beyer, F.; Garcia-Garcia, I.; Heinrich, M.; Scholz, M.; Schroeter, M.; Sacher, J.; Luck, T.; Riedel-Heller, S.; Stumvoll, M.; Villringer, A.; Witte, A. V.

10.1101/411504 — neuroscience — Posted on 2018-09-07

2034 The diversity of interaction types drives the functioning of ecological communities

Miele, V.; Guill, C.; Ramos-Jiliberto, R.; Kefi, S.

10.1101/411249 — ecology — Posted on 2018-09-07

2035 Every cloud has a silver lining: Moderate plant water stress positively impacts development, immunity, and gut microbiota of a specialist herbivore

Rosa, E.; Minard, G.; Lindholm, J.; Saastamoinen, M.

10.1101/411678 — ecology — Posted on 2018-09-07

2036 Karyopherin Kap114p regulates TATA-binding protein-mediated transcription

Liao, C.-C.; Shankar, S.; Ahmed, G. R.; Hsia, K.-C.

10.1101/411223 — cell biology — Posted on 2018-09-07

2037 Gene-specific transcriptional memory in mammalian cell lineages

Phillips, N. E.; Mandic, A.; Omidi, S.; Naef, F.; Suter, D. M.

10.1101/411447 — cell biology — Posted on 2018-09-07

2038 Association of HLA class I type with prevalence and outcome of patients with acute myeloid leukemia and mutated nucleophosmin

Kuzelova, K.; Brodska, B.; Schetelig, J.; Röllig, C.; Racil, Z.; Walz, J. S.; Helbig, G.; Fuchs, O.; Vrana, M.; Pecherkova, P.; Salek, C.; Mayer, J.

10.1101/411645 — cancer biology — Posted on 2018-09-07

2039 Uromonitor(R) as a novel sensitive and specific urine-based test for recurrence surveillance of patients with non-muscle invasive bladder cancer

Sampaio, C.; Batista, R.; Peralta, P.; Conceicao, P.; Sismeiro, A.; Prazeres, H.; Vinagre, J.; Soares, P.

10.1101/410738 — cancer biology — Posted on 2018-09-07

2040 Mismatch-repair signature mutations activate gene enhancers across colorectal cancer epigenomes

Hung, S.; Saiakhova, A.; Faber, Z.; Bartels, C. F.; Neu, D.; Bayles, I.; Ojo, E.; Hong, E. S.; Pontius, W. D.; Morton, A. R.; Liu, R.; Kalady, M. F.; Wald, D. N.; Markowitz, S.; Scacheri, P. C.

10.1101/411264 — cancer biology — Posted on 2018-09-07

2041 Interpretable and accurate prediction models for metagenomics data

Prifti, E.; Chevaleyre, Y.; Hanczar, B.; Belda Cuesta, E.; Clement, K.; Danchin, A.; Zucker, J.-D.

10.1101/409144 — bioinformatics — Posted on 2018-09-07

2042 The functional circular RNA, ciRS-7 (CDR1as), is biosynthesized using back-splicing promoted by inverted mammalian-wide MIRs but not primate-specific Alus

Yoshimoto, R.; Rahimi, K.; Ebbesen, K. K.; Hansen, T.; Kjems, J.; Mayeda, A.

10.1101/411231 — molecular biology — Posted on 2018-09-07

2043 in vitro egg production by the human parasite Schistosoma mansoni

Wang, J.; Chen, R.; Collins, J.

10.1101/411397 — microbiology — Posted on 2018-09-07

2044 An improved high-quality genome assembly and annotation of Qingke, Tibetan hulless barley

Nyima, T.; Zeng, X.; Li, X.; Bai, L.; Wang, Y.; Xu, T.; Yuan, H.; Xu, Q.; Zha, S.; Wei, Z.; Qimei, W.; Basang, Y.; Dunzhu, J.; Yu, M.

10.1101/409136 — genomics — Posted on 2018-09-07

2045 New genetic variants associated with major adverse cardiovascular events in patients with acute coronary syndromes and treated with clopidogrel and aspirin

Liu, X.; Xu, H.; Xu, H.; Geng, Q.; Mak, W.-H.; Ling, F.; Su, Z.; Yang, F.; Zhang, T.; Chen, J.; Yang, H.; Wang, J.; Zhang, X.; Xu, X.; Jia, H.; Zhang, Z.; Liu, X.; Zhong, S.

10.1101/411165 — genetics — Posted on 2018-09-07

2046 Interactome comparison of human embryonic stem cell lines with the inner cell mass and trophectoderm

Stevens, A.; Smith, H.; Garner, T.; Minogue, B.; Sneddon, S.; Shaw, L.; Oldershaw, R.; Bates, N.; Brison, D.; Kimber, S.

10.1101/411439 — developmental biology — Posted on 2018-09-07

2047 Tissue self-organization based on collective cell migration by contact activation of locomotion and chemotaxis

Fujimori, T.; Nakajima, A.; Shimada, N.; Sawai, S.

10.1101/411306 — cell biology — Posted on 2018-09-07

2048 Transcytosis maintains CFTR apical polarity in the face of constitutive and mutation-induced basolateral missorting

Bidaud-Meynard, A.; Bossard, F.; Schnur, A.; Fukuda, R.; Veit, G.; Xu, H.; Lukacs, G. L.

10.1101/411322 — cell biology — Posted on 2018-09-07

2049 SCDT: Detecting CNVs of low chimeric ratio in cf-DNA

Qian, Z.; Wang, X.; Shi, C.; Han, R.; Wang, Y.; Zhu, H.

10.1101/411256 — bioinformatics — Posted on 2018-09-07

2050 Microbial Cells Harboring a Mitochondrial Gene Are Capable of CO2 Capture

Zhou, Y.; Ouyang, L.; Yi, X.; Gan, T.; Qi, J.; Wan, Y.; Wang, Y.; An, S.; Shi, Y.; Yang, W.; Chen, W.; Luo, Z.; Li, J.; Luo, J.; Nuertai, X.; Zhu, X.; Yang, F.; Zhang, X.; Weng, S.; Liu, Q.; Cao, W.; He, J.

10.1101/411090 — bioengineering — Posted on 2018-09-07

2051 Sustained hovering, head stabilization and vision through the water surface in the Pied kingfisher (Ceryle rudis).

Katzir, G.; Berman, D.; Nathan, M.; Weihs, D.

10.1101/409201 — zoology — Posted on 2018-09-07

2052 INFLUENZA A VIRUS RIBONUCLEOPROTEINS FORM LIQUID ORGANELLES AT ENDOPLASMIC RETICULUM EXIT SITES

Alenquer, M.; Vale-Costa, S.; Sousa, A. L.; Etibor, T. A.; Ferreira, F.; Amorim, M.-J.

10.1101/410373 — microbiology — Posted on 2018-09-07

2053 Characterisation of the HIV-1 Molecular Epidemiology in Nigeria: Origin, Diversity, Demography and Geographic Spread

Nazziwa, J.; Faria, N.; Chaplin, B.; Razziwa, H.; Dakum, P.; Abimiku, A.; Charurat, M.; Ndembi, N.; Esbjornsson, J.

10.1101/410431 — microbiology — Posted on 2018-09-07

2054 Natural alteration of HIV-1 co-receptor tropism by contemporaneous HIV-2 infection 1

Esbjornsson, J.; Mansson, F.; Norrgren, H.; Rowland-Jones, S.

10.1101/410456 — microbiology — Posted on 2018-09-07

2055 Tracing the phylogenetic history of the Crl regulon through the Bacteria and Archaea genomes.

Santos-Zavaleta, A.; Perez-Rueda, E.; Sanchez-Perez, M.; Velazquez-Ramirez, D. A.; Collado-Vides, J.

10.1101/410621 — genomics — Posted on 2018-09-07

2056 Genome-Wide Control of Population Structure and Relatedness in Genetic Association Studies via Linear Mixed Models with Orthogonally Partitioned Structure

Conomos, M. P.; Reiner, A. P.; McPeek, M. S.; Thornton, T. A.

10.1101/409953 — genetics — Posted on 2018-09-07

2057 Distribution of native European spiders follows the prey attraction pattern of introduced carnivorous pitcher plants

Zander, A.; Girardet, M.-A.; Bersier, L.-F.

10.1101/410399 — ecology — Posted on 2018-09-07

2058 Evolution of gastrulation in cavefish: heterochronic cell movements and maternal factors

Torres-Paz, J.; Leclercq, J.; Retaux, S.

10.1101/410563 — developmental biology — Posted on 2018-09-07

2059 Information content of downwelling skylight for non-imaging visual systems

Thiermann, R.; Sweeney, A.; Murugan, A.

10.1101/408989 — biophysics — Posted on 2018-09-07

2060 QUBIC2: A novel biclustering algorithm for large-scale bulk RNA-sequencing and single-cell RNA-sequencing data analysis

Xie, J.; Ma, A.; Zhang, Y.; Liu, B.; Wang, C.; Cao, S.; Zhang, C.; Ma, Q.

10.1101/409961 — bioinformatics — Posted on 2018-09-07

2061 Scalable Nonlinear Programming Framework for Parameter Estimation in Dynamic Biological System Models

Shin, S.; Venturelli, O.; Zavala, V. M.

10.1101/410688 — bioinformatics — Posted on 2018-09-07

2062 Construction of Feed Forward MultiLayer Perceptron Model For Genetic Dataset in Leishmaniasis Using Cognitive Computing

Mahalingam, S.; Kabra, R.; Singh, S.

10.1101/411363 — bioinformatics — Posted on 2018-09-07

2063 Influenza incidence prediction for the United States: an update for the 2018-2019 season

Du, X.; Peng, Y.; Liu, M.; Pascual, M.

10.1101/411348 — bioinformatics — Posted on 2018-09-07

2064 Resting-state fMRI data of awake dogs (Canis familiaris) via group-level independent component analysis reveal multiple, spatially distributed resting-state networks

Szabo, D.; Czeibert, K.; Kettinger, A.; Gacsi, M.; Andics, A.; Miklosi, A.; Kubinyi, E.

10.1101/409532 — neuroscience — Posted on 2018-09-07

2065 Overlapping but asymmetrical relationships between schizophrenia and autism revealed by brain connectivity

Yoshihara, Y.; Lisi, G.; Yahata, N.; Fujino, J.; Matsumoto, Y.; Miyata, J.; Sugihara, G.; Urayama, S.-i.; Kubota, M.; Yamashita, M.; Hashimoto, R.; Ichikawa, N.; Cahn, W.; van Haren, N. E. M.; Mori, S.; Okamoto, Y.; Kasai, K.; Kato, N.; Imamizu, H.; Kahn, R. S.; Sawa, A.; Kawato, M.; Murai, T.; Morimoto, J.; Takahashi, H.

10.1101/403212 — neuroscience — Posted on 2018-09-07

2066 Comparison of early effects of PCV7, PCV10 and PCV13 on S. pneumoniae (SP) nasopharyngeal carriage in a population based study; the Palestinian-Israeli Collaborative Research (PICR)

Abu Seir, R.; Azmi, K.; Hamdan, A.; Namouz, H.; Jaar, F.; Jaber, H.; Rubin, C.; Doron, D.; Rahav, G.; Abdeen, Z.; Regev-Yochay, G.

10.1101/409359 — microbiology — Posted on 2018-09-07

2067 Preferential sampling for presence/absence data and for fusion of presence/absence data with presence-only data

Gelfand, A.; Shirota, S.

10.1101/409680 — ecology — Posted on 2018-09-07

2068 Classification and monomer-by-monomer annotation of suprachromosomal family 1 alpha satellite higher-order repeats in hg38 human genome assembly

Uralsky, L.; Shepelev, V. A.; Alexandrov, A. A.; Yurov, Y. B.; Rogaev, E. I.; Alexandrov, I. A.

10.1101/408674 — bioinformatics — Posted on 2018-09-07

2069 Implicit temporal predictability biases slow oscillatory phase in auditory cortex and enhances pitch discrimination sensitivity

Herbst, S. K.; Obleser, J.

10.1101/410274 — neuroscience — Posted on 2018-09-07

2070 The effects of awareness of the perturbation during motor adaptation on hand localization

Modchalingam, S.; Vachon, C. M.; 't Hart, B. M.; Henriques, D. Y. P.

10.1101/410753 — neuroscience — Posted on 2018-09-07

2071 Focal disruption of temporal cortex in macaque during midbrain-induced neglect

Bogadhi, A. R.; Bollimunta, A.; Leopold, D. A.; Krauzlis, R. J.

10.1101/410233 — neuroscience — Posted on 2018-09-07

2072 Planar cell polarity pathway and development of the human visual cortex

Shin, J.; Ma, S.; Hofer, E.; Patel, Y.; Roshchupkin, G.; Sousa, A. M.; Jian, X.; Gottesmann, R.; Mosley, T. H.; Fornage, M.; Saba, Y.; Pirpamer, L.; Schmidt, R.; Schmidt, H.; Mazoyer, B.; Carrion-Castillo, A.; Bis, J.; Li, S.; Yang, Q.; Luciano, M.; Karama, S.; Lewis, L.; Bastin, M.; Harris, M. A.; Deary, I.; Wardlaw, J. M.; Scholz, M.; Loeffler, M.; Witte, V.; Beyer, F.; Villringer, A.; Adams, H. H.; Ikrum, M. A.; Kremen, W. S.; Gillespie, N. A.; the ENIGMA Consortium, ; Sestan, N.; Pausova, Z.; Seshadri, S.; Paus, T.; the neuroCHARGE Working Group,

10.1101/404558 — neuroscience — Posted on 2018-09-07

2073 The length distribution and multiple specificity of naturally presented HLA-I ligands

Gfeller, D.; Guillaume, P.; Michaux, J.; Pak, H.-S.; Daniel, R. T.; Racle, J.; Coukos, G.; Bassani-Sternberg, M.

10.1101/335661 — immunology — Posted on 2018-09-07

2074 RUNX3 regulates cell cycle-dependent chromatin dynamics by functioning as a pioneer factor of the restriction point

Lee, J.; Kim, D.; Jang, J.; Park, T.; Lee, Y.; Chi, X.-Z.; Park, I. Y.; Hyun, J.; Ito, Y.; Bae, S.-C.

10.1101/409227 — cell biology — Posted on 2018-09-07

2075 Chromosome loss rate in cells of different ploidy can be explained by spindle self-organization

Jelenic, I.; Selmecki, A. M.; Laan, L.; Pavin, N.

10.1101/204230 — evolutionary biology — Posted on 2018-09-07

2076 Pelagiphages in the Podoviridiae family integrate into host genomes

Zhao, Y.; Qin, F.; Zhang, R.; Giovannoni, S. J.; Zhang, Z.; Sun, J.; Du, S.; Rensing, C.

10.1101/410191 — microbiology — Posted on 2018-09-07

2077 Unjamming overcomes kinetic and proliferation arrest in terminally differentiated cells and promotes collective motility of carcinoma.

Palamidessi, A.; Malinverno, C.; Frottoli, E.; Corallino, S.; Barbieri, E.; Sigismund, S.; Di Fiore, P. P.; Beznoussenko, G. V.; Martini, E.; Garre, M.; Parazzoli, D.; Ferrara, I.; Tripodo, C.; Giavazzi, F.; Cerbino, R.; Scita, G.

10.1101/388553 — cancer biology — Posted on 2018-09-07

2078 Effect of Sec61 interaction with Mpd1 on Endoplasmic Reticulum-Associated Degradation

Pereira, F.; Rettel, M.; Stein, F.; Savitski, M. M.; Collinson, I.; Romisch, K.

10.1101/411173 — biochemistry — Posted on 2018-09-07

2079 Inspecting Morphological Features of Mosquito Wings for Identification with Image Recognition Tools

Haarlem, C.; Vos, R.

10.1101/410449 — bioinformatics — Posted on 2018-09-07

2080 Single-cell transcriptomics of the mouse gonadal soma reveals the establishment of sexual dimorphism in distinct cell lineages

Stevant, I.; Kuhne, F.; Greenfield, A.; Chaboissier, M.-C.; Dermitzakis, E. T.; Nef, S.

10.1101/410407 — developmental biology — Posted on 2018-09-07

2081 Repression of Transcription Factor AP-2 Alpha by Peroxisome Proliferator Activated Receptor Gamma Reveals a Novel Transcriptional Circuit in basal-squamous Bladder Cancer

Yamashita, H.; Imamura Kawasawa, Y.; Shuman, L.; Zheng, Z.; Tran, T.; Walter, V.; Warrick, J. I.; Al-Ahmadie, H.; Kaag, M.; Wong, P. K.; Raman, J. D.; DeGraff, D. J.

10.1101/401307 — cancer biology — Posted on 2018-09-07

2082 Chromatic Bacteria - A broad host-range plasmid and chromosomal insertion toolbox for fluorescent protein expression in bacteria

Schlechter, R. O.; Jun, H.; Bernach, M.; Oso, S.; Boyd, E. F.; Munoz-Lintz, D. A.; Dobson, R. C.; Remus, D. M.; Remus-Emsermann, M.

10.1101/402172 — microbiology — Posted on 2018-09-07

2083 Simultaneous single-channel multiplex and quantification of carbapenem-resistant genes using multidimensional standard curves

Rodriguez-Manzano, J.; Moniri, A.; Malpartida-Cardenas, K.; Dronavalli, J.; Davies, F.; Holmes, A.; Georgiou, P.

10.1101/409912 — microbiology — Posted on 2018-09-07

2084 On the post-glacial spread of human commensal Arabidopsis thaliana: journey to the east

Hsu, C.-W.; Lo, C.-Y.; Lee, C.-R.

10.1101/411108 — evolutionary biology — Posted on 2018-09-07

2085 Comparative analysis of miR-155 tissue expression profiles of different breeds of chicken

Man, C.; Xu, S.; Chang, Y.; Wu, G.; Zhang, W.

10.1101/409623 — molecular biology — Posted on 2018-09-07

2086 Transparency reduces predator detection in chemically protected clearwing butterflies

Arias, M.; Mappes, J.; Desbois, C.; Gordon, S.; McClure, M.; Elias, M.; Nokelainen, O.; Gomez, D.

10.1101/410241 — evolutionary biology — Posted on 2018-09-07

2087 Theory of measurement for site-specific evolutionary rates in amino-acid sequences

Sydykova, D. K.; Wilke, C. O.

10.1101/411025 — evolutionary biology — Posted on 2018-09-07

2088 The Aquilegia genome: adaptive radiation and an extraordinarily polymorphic chromosome with a unique history

Filiault, D.; Ballerini, E.; Mandakova, T.; Akoz, G.; Derieg, N.; Schmutz, J.; Jenkins, J.; Grimwood, J.; Shu, S.; Hayes, R. D.; Hellsten, U.; Barry, K.; Yan, J.; Mihaltcheva, S.; Karafiatova, M.; Nizhynska, V.; Lysak, M. A.; Hodges, S.; Nordborg, M.

10.1101/264101 — evolutionary biology — Posted on 2018-09-07

2089 Bovine blastocyst development depends on threonine catabolism

Najafzadeh, V.; Henderson, H.; Martinus, R.; Oback, B.

10.1101/397562 — developmental biology — Posted on 2018-09-07

2090 Resource: Scalable whole genome sequencing of 40,000 single cells identifies stochastic aneuploidies, genome replication states and clonal repertoires

10.1101/411058 — genomics — Posted on 2018-09-07

2091 Large-scale genome-wide association meta-analysis of endometriosis reveals 13 novel loci and genetically-associated comorbidity with other pain conditions

Rahmioglu, N.; Banasik, K.; Christofidou, P.; Danning, R.; Galarneau, G.; Giri, A.; MacGregor, S.; Mortlock, S.; Sapkota, Y.; Schork, A. J.; Sobalska-Kwapis, M.; Stefansdottir, L.; Turman, C.; Oimari, O.; Adachi, S.; Andrews, S.; Arnadottir, R.; Burgdorf, K. S.; Campbell, A.; Cheuk, C. S.; Clementi, C.; Cook, J.; De Vivio, I.; DiVasta, A.; Dorien, O.; Edwards, T.; Fontanillas, P.; Fung, J. N.; Geirsson, R. T.; Girling, J.; Harris, H. R.; Holdsworth-Carson, S.; Houshdaran, S.; Hu-Seliger, T.; Jarvelin, M.-R.; Kepka, E.; Kulig, B.; Laufer, M. R.; Law, M.; Low, S.-K.; Mangino, M.; Marciniak, B.;

10.1101/406967 — genomics — Posted on 2018-09-07

2092 Genome-wide association studies on endometriosis and endometriosis-related infertility

Galarneau, G.; Fontanillas, P.; the Celmatix Research Team, ; the 23andMe Research Team, ; Clementi, C.; Hu-Seliger, T.; Parfitt, D.-E.; Tung, J. Y.; Yurttas Beim, P.

10.1101/401448 — genetics — Posted on 2018-09-07

2093 Pervasive population genomic consequences of genome duplication in Arabidopsis arenosa

Monnahan, P.; Kolar, F.; Baduel, P.; Sailer, C.; Koch, J.; Horvath, R.; Laenen, B.; Schmickl, R.; Paajanen, P.; Sramkova, G.; Bohutinska, M.; Arnold, B.; Weisman, C. M.; Marhold, K.; Slotte, T.; Bomblies, K.; Yant, L.

10.1101/411041 — evolutionary biology — Posted on 2018-09-07

2094 RUNX3 regulates cell cycle-dependent chromatin dynamics by functioning as a pioneer factor of the restriction point

Lee, J.; Kim, D.; Jang, J.; Park, T.; Lee, Y.; Chi, X.-Z.; Park, I. Y.; Hyun, J.; Ito, Y.; Bae, S.-C.

10.1101/409227 — cell biology — Posted on 2018-09-07

2095 IMPROVING THE PERFORMANCE OF THE RNA AMBER FORCE FIELD BY TUNING THE HYDROGEN-BONDING INTERACTIONS

Kuhrova, P.; Mlynsky, V.; Zgarbova, M.; Krepl, M.; Bussi, G.; Best, R. B.; Otyepka, M.; Sponer, J.; Banas, P.

10.1101/410993 — biochemistry — Posted on 2018-09-07

2096 The identification of an anti-thrombin molecule via the screening of semi-random DNA libraries

Feng, F.; Li, Z.; Chen, Z.; Wang, L.; Huang, J.; Wan, Y.; Shi, Y.; Liu, Q.

10.1101/282806 — molecular biology — Posted on 2018-09-06

2097 Perceived threat bias and reduced hippocampal volume in combat veterans

Grupe, D. W.; Hushek, B. A.; Ellis, K.; Schoen, A. J.; Wielgosz, J.; Nitschke, J. B.; Davidson, R. J.

10.1101/313221 — neuroscience — Posted on 2018-09-06

2098 Field evidence for manipulation of mosquito host selection by the human malaria parasite, Plasmodium falciparum

Vantaux, A.; Yao, F.; Hien, D. F.; Guissou, E.; Yameogo, B. K.; Gouagna, L.-C.; Fontenille, D.; Renaud, F.; Simard, F.; Constantini, C.; Thomas, F.; Mouline, K.; Roche, B.; Cohuet, A.; Dabire, K. R.; Lefevre, T.

10.1101/207183 — evolutionary biology — Posted on 2018-09-06

2099 A Humanized Monoclonal Antibody against the Enzymatic Subunit of Ricin Toxin Rescues Rhesus macaques from the Lethality of Aerosolized Ricin

Roy, C. J.; Ehrbar, D.; Bohorova, N.; Bohorov, O.; Kim, D.; Pauley, M.; Whaley, K.; Rong, Y.; Torres-Velez, F. J.; Vitetta, E.; Didier, P. J.; Doyle-Meyers, L.; Zeitlin, L.; Mantis, N.

10.1101/407817 — immunology — Posted on 2018-09-06

2100 Parameterising continuum models of heat transfer in heterogeneous living skin using experimental data

McInerney, S.; Carr, E.; Simpson, M. J.

10.1101/354563 — biophysics — Posted on 2018-09-06

2101 Lesion Attributes Segmentation for Melanoma Detection with Deep Learning

Chen, E. Z.; Dong, X.; Wu, J.; Jiang, H.; Li, X.; Rong, R.

10.1101/381855 — bioinformatics — Posted on 2018-09-06

2102 Implicit temporal predictability biases slow oscillatory phase in auditory cortex and enhances pitch discrimination sensitivity

Herbst, S. K.; Obleser, J.

10.1101/410274 — neuroscience — Posted on 2018-09-06

2103 Differences in functional connectivity along the anterior-posterior axis of human hippocampal subfields

Dalton, M. A.; McCormick, C.; Maguire, E. A.

10.1101/410720 — neuroscience — Posted on 2018-09-06

2104 On the interpretation of tractography-based parcellations

Clayden, J.; Thomas, D. L.; Kraskov, A.

10.1101/409268 — neuroscience — Posted on 2018-09-06

2105 Asymmetric adaptation reveals functional lateralization for graded versus discrete stimuli

Desrochers, M.; Lange, M.; Hendricks, M.

10.1101/411033 — neuroscience — Posted on 2018-09-06

2106 Morphological profile determines the frequency of spontaneous calcium events in astrocytic processes

Wu, Y.-W.; Gordleeva, S.; Tang, X.; Shih, P.-Y.; Dembitskaya, Y.; Semyanov, A.

10.1101/410076 — neuroscience — Posted on 2018-09-06

2107 Amplifying the redistribution of somato-dendritic inhibition by the interplay of three interneuron types

Hertaeg, L.; Sprekeler, H.

10.1101/410340 — neuroscience — Posted on 2018-09-06

2108 The neural basis of hand choice: An fMRI investigation of the Posterior Parietal Interhemispheric Competition model.

Fitzpatrick, A.; Dundon, N. M.; Valyear, K. F.

10.1101/409565 — neuroscience — Posted on 2018-09-06

2109 Bayesian Hypothesis Testing And Experimental Design For Two-Photon Imaging Data

Rogerson, L. E.; Zhao, Z.; Franke, K.; Berens, P.; Euler, T.

10.1101/410357 — neuroscience — Posted on 2018-09-06

2110 How is experience transformed into memory?

Manning, J. R.; Fitzpatrick, P. C.; Heusser, A. C.

10.1101/409987 — neuroscience — Posted on 2018-09-06

2111 Single-cell transcriptional dynamics and origins of neuronal diversity in the developing mouse neocortex

Telley, L.; Agirman, G.; Prados, J.; Fievre, S.; Oberst, P.; Vitali, I.; Nguyen, L.; Dayer, A.; Jabaudon, D.

10.1101/409458 — neuroscience — Posted on 2018-09-06

2112 Serotonin regulates dynamics of cerebellar granule cell activity by modulating tonic inhibition

Fleming, E.; Hull, C.

10.1101/411017 — neuroscience — Posted on 2018-09-06

2113 Dynamic 3D tissue architecture directs BMP morphogen signaling during Drosophila wing morphogenesis

Gui, J.; Huang, Y.; Kracklauer, M.; Toddie-Moore, D.; Kikushima, K.; Nix, S.; Ishimoto, Y.; Shimmi, O.

10.1101/411009 — developmental biology — Posted on 2018-09-06

2114 Control of eNOS and nNOS through regulation of obligatory conformational changes in the reductase catalytic cycle

Salerno, J. C.; Hopper, B. L.; Ghosh, D. K.; Scott, I. M.; McMurry, J. L.

10.1101/410571 — biochemistry — Posted on 2018-09-06

2115 The effects of awareness of the perturbation during motor adaptation on hand localization

't Hart, B.; Vachon, C.; 't Hart, B. M.; Henriques, D. Y. P.

10.1101/410753 — neuroscience — Posted on 2018-09-06

2116 Wide-field imaging of cortical neuronal activity with red-shifted functional indicators during motor task execution

Montagni, E.; Resta, F.; Conti, E.; Scaglione, A.; Pasquini, M.; Micera, S.; ALLEGRA mascaro, A. L.; Pavone, F.

10.1101/410365 — neuroscience — Posted on 2018-09-06

2117 Gαq sensitizes TRPM8 to inhibition by PI(4,5)P2 depletion upon receptor activation

Liu, L.; Yudin, Y.; Kang, C.; Shirokova, N.; Rohacs, T.

10.1101/410878 — neuroscience — Posted on 2018-09-06

2118 In vitro activity of a novel antifungal compound, MYC-053, against clinically significant antifungal-resistant strains of Candida glabrata, Candida auris, Cryptococcus neoformans, and Pneumocystis spp.

Tetz, G.; Collins, M.; Vikina, D.; Tetz, V.

10.1101/409896 — microbiology — Posted on 2018-09-06

2119 Chromatin rewiring mediates programmed evolvability via aneuploidy

Brimacombe, C.; Burke, J.; Parsa, J.-Y.; Witchley, J.; Burrack, L.; Madhani, H.; Noble, S.

10.1101/407841 — genetics — Posted on 2018-09-06

2120 Synaptic proteins expressed by oligodendrocytes mediate CNS myelination

Hughes, A. N.; Appel, B.

10.1101/410969 — neuroscience — Posted on 2018-09-06

2121 Network Structure During Encoding Predicts Working Memory Performance

Wodeyar, A.; Srinivasan, R.

10.1101/409615 — neuroscience — Posted on 2018-09-06

2122 Efficient curation of genebanks using next-generation sequencing reveals substantial duplication of germplasm accessions

Singh, N.; Wu, S.; Raupp, J.; Sehgal, S.; Arora, S.; Tiwari, V.; Vikram, P.; Singh, S.; Chhuneja, P.; Gill, B.; Poland, J.

10.1101/410779 — genomics — Posted on 2018-09-06

2123 Generalisation behaviour of predators toward warning signals displayed by harmful prey: answers from a video-game played by humans.

Arias, M.; Griffiths, D.; Joron, M.; Davey, J.; Jiggins, C. D.; Llaurens, V.

10.1101/409557 — evolutionary biology — Posted on 2018-09-06

2124 Social integration predicts mitochondrial DNA copy number in rhesus macaques

Debray, R.; Snyder-Mackler, N.; Kohn, J.; Wilson, M.; Barreiro, L.; Tung, J.

10.1101/408849 — animal behavior and cognition — Posted on 2018-09-06

2125 The geometry of abstraction in hippocampus and prefrontal cortex

Bernardi, S.; Benna, M. K.; Rigotti, M.; Munuera, J.; Fusi, S.; Salzman, D.

10.1101/408633 — neuroscience — Posted on 2018-09-06

2126 Replicated point processes with application to population dynamics models

Favretti, M.

10.1101/409292 — ecology — Posted on 2018-09-06

2127 hsegHMM: Hidden Markov Model-based Allele-specific Copy Number Alteration Analysis Accounting for Hypersegmentation

Choo-Wosoba, H.; Albert, P.; Zhu, B.

10.1101/410845 — bioinformatics — Posted on 2018-09-06

2128 Object-in-Place Memory Predicted by Anterolateral Entorhinal Cortex and Parahippocampal Cortex Volume in Older Adults

Yeung, L.-K.; Olsen, R. K.; Hong, B.; Mihajlovic, V.; D'Angelo, M. C.; Kacollja, A.; Ryan, J. D.; Barense, M. D.

10.1101/409607 — neuroscience — Posted on 2018-09-06

2129 Adaptive Encoding of Coordinating Information in the Crayfish Central Nervous System

Schneider, A. C.; Blumenthal, F.; Smarandache-Wellmann, C. R.

10.1101/410951 — neuroscience — Posted on 2018-09-06

2130 Characterization of a thermal stable poliovirus mutant reveals distinct mechanisms of virion stabilization

Nguyen, Y.; Jesudhasan, P. R.; Aguilera, E. R.; Pfeiffer, J. K.

10.1101/410175 — microbiology — Posted on 2018-09-06

2131 Phylogenies and diversification rates: variance cannot be ignored

Rabosky, D. L.

10.1101/406504 — evolutionary biology — Posted on 2018-09-06

2132 Monitoring the eradication of the highly invasive topmouth gudgeon (Pseudorasbora parva) using a novel eDNA assay

Robinson, C.; Garcia de Leaniz, C.; Rolla, M.; Consuegra, S.

10.1101/409821 — ecology — Posted on 2018-09-06

2133 Temperate grass allergy season defined by spatio-temporal shifts in airborne pollen communities

10.1101/410829 — ecology — Posted on 2018-09-06

2134 A framework for dissecting ecological mechanisms underlying the island species-area relationship

Chase, J. M.; Gooriah, L.; May, F.; Ryberg, W. A.; Schuler, M.; Craven, D.; Knight, T.

10.1101/410126 — ecology — Posted on 2018-09-06

2135 LinkedSV: Detection of mosaic structural variants from linked-read exome and genome sequencing data

Fang, L.; Kao, C.; Gonzalez, M. V.; Pellegrino da Silva, R.; Li, M.; Hakonarson, H.; Wang, K.

10.1101/409789 — bioinformatics — Posted on 2018-09-06

2136 Tensorflow Based Deep Learning Model and Snakemake Workflow for Peptide-Protein Binding Predictions

Altay, G.

10.1101/410928 — bioinformatics — Posted on 2018-09-06

2137 Deep learning based retrieval system for gigapixel histopathology cases and open access literature

Otalora, S.; Schaer, R.; Atzori, M.; Jimenez del Toro, O. A.; Muller, H.

10.1101/408237 — pathology — Posted on 2018-09-06

2138 Bacteria-mediated stabilization of a panel of Picornaviruses

Aguilera, E. R.; Nguyen, Y.; Sasaki, J.; Pfeiffer, J. K.

10.1101/410167 — microbiology — Posted on 2018-09-06

2139 Ecological niche modelling of the wattled crane (Bugeranus carunculatus) suggest range expansion and contraction during the Pleistocene

Zacarias, D. A.

10.1101/406710 — ecology — Posted on 2018-09-06

2140 Glycogen Synthase Kinase 3 induces multilineage maturation of human pluripotent stem cell-derived lung progenitors in 3D culture.

Snoeck, H.-W.; Rodrigues Toste de Carvalho, A. L.; Strikoudis, A.; Dantas, T.; Chen, Y.-W.; Liu, H.-Y.; Vallee, R. B.; Correia-Pinto, J.

10.1101/410894 — developmental biology — Posted on 2018-09-06

2141 Rapidly Assessing the Quality of Targeted Proteomics Experiments Through Monitoring Stable-isotope Labeled Standards

Gibbons, B. C.; Fillmore, T. L.; Gao, Y.; Moore, R. J.; Liu, T.; Nakayasu, E. S.; Metz, T. O.; Payne, S. H.

10.1101/409805 — bioinformatics — Posted on 2018-09-06

2142 Dystroglycan is a scaffold for extracellular axon guidance decisions

Lindenmaier, L. B.; Parmentier, N.; Guo, C.; Tissir, F.; Wright, K.

10.1101/410944 — neuroscience — Posted on 2018-09-06

2143 Reproductive skew affects social information use

Smolla, M.; Rosher, C.; Gilman, R. T.; Shultz, S.

10.1101/410886 — evolutionary biology — Posted on 2018-09-06

2144 A High Avidity Biosensor Reveals PI(3,4)P2 is Predominantly a Class I PI3K Signaling Product

Goulden, B.; Pacheco, J.; Dull, A.; Zewe, J.; Deiters, A.; Hammond, G. R.

10.1101/410811 — cell biology — Posted on 2018-09-06

2145 The single mitochondrion of the kinetoplastid parasite Crithidia fasciculata is a dynamic network

DiMaio, J.; Ruthel, G.; Cannon, J.; Malfara, M.; Povelones, M. L.

10.1101/388660 — cell biology — Posted on 2018-09-06

2146 A metastable contact and structural disorder in the estrogen receptor transactivation domain

Peng, Y.; Cao, S.; Kiselar, J.; Xiao, X.; Du, Z.; Hsien, A.; Ko, S.; Chen, Y.; Agrawal, P.; Zheng, W.; Shi, W.; Jiang, W.; Yang, L.; Chance, M.; Surewicz, W.; Buck, M.; Yang, S.

10.1101/332205 — biophysics — Posted on 2018-09-06

2147 Active site closure stabilizes the backtracked state of RNA polymerase

Turtola, M.; Makinen, J.; Belogurov, G. A.

10.1101/410746 — biochemistry — Posted on 2018-09-06

2148 DNA-PKcs promotes DNA end processing

Deshpande, R.; Myler, L.; Soniat, M.; Makharashvili, N.; Lee, L.; Lees-Miller, S.; Finkelstein, I.; Paull, T. T.

10.1101/395731 — molecular biology — Posted on 2018-09-06

2149 The ortholog of chloroquine resistance transporter (TgCRT) plays a key role in maintaining the integrity of the endolysosomal system in Toxoplasma gondii to facilitate host invasion

Thornton, L. B.; Teehan, P.; Floyd, K.; Cochrane, C.; Bergmann, A.; Dou, Z.

10.1101/409904 — microbiology — Posted on 2018-09-06

2150 Movement responses to environment: fast inference of variation among southern elephant seals with a mixed effects model

Jonsen, I.; McMahon, C.; Patterson, T.; Auger-Methe, M.; Harcourt, R.; Hindell, M.; Bestley, S.

10.1101/314690 — ecology — Posted on 2018-09-06

2151 Challenges of Measuring Energy Expenditure Differences Between Diets Varying in Carbohydrate using Doubly Labeled Water

Hall, K. D.; Guo, J.; Chen, K. Y.; Leibel, R. L.; Reitman, M. L.; Rosenbaum, M.; Smith, S. R.; Ravussin, E.

10.1101/403931 — physiology — Posted on 2018-09-06

2152 Identification of miRNAs and associated pathways regulated by Leukemia Inhibitory Factor in trophoblastic cell lines

Morales-Prieto, D. M.; Barth, E.; Gutierrez-Samudio, R. N.; Chaiwangyen, W.; Ospina-Prieto, S.; Gruhn, B.; Schleussner, E.; Marz, M.; Markert, U. R.

10.1101/410381 — molecular biology — Posted on 2018-09-06

2153 Profiling grapevine trunk pathogens in planta: A case for community-targeted DNA metabarcoding

Morales-Cruz, A.; Figueroa-Balderas, R.; Garcia, J. F.; Tran, E.; Rolshausen, P. E.; Baumgartner, K.; Cantu, D.

10.1101/409169 — microbiology — Posted on 2018-09-06

2154 A versatile platform strain for high-fidelity multiplex genome editing

Egbert, R. G.; Rishi, H. S.; Adler, B. A.; McCormick, D. M.; Toro, E.; Gill, R. T.; Arkin, A. P.

10.1101/410001 — synthetic biology — Posted on 2018-09-06

2155 Nuclear polymorphism and non-proliferative adult neurogenesis in human neural crest-derived cells.

Bueno, C.; Martinez-Morga, M.; Martinez, S.

10.1101/325613 — neuroscience — Posted on 2018-09-06

2156 Function and essentiality of Plasmodium falciparum Plasmepsin V

Boonyalai, N.; Collins, C. R.; Hackett, F.; Withers-Martinez, C.; Blackman, M. J.

10.1101/404798 — molecular biology — Posted on 2018-09-06

2157 Dimerisation of APOBEC1 is dispensable for its RNA editing activity

Chieca, M.; Montini, M. D.; Severi, F.; Pecori, R.; Conticello, S. G.

10.1101/410803 — molecular biology — Posted on 2018-09-06

2158 Versatile Multi-Detector Scheme for Adaptive Optics Scanning Laser Ophthalmoscopy

Mozaffari, S.; Jaedicke, V.; LaRocca, F.; Tiruveedhula, P.; Roorda, A.

10.1101/408526 — bioengineering — Posted on 2018-09-06

2159 Fall Risk Prediction in Multiple Sclerosis Using Postural Sway Measures, A Machine Learning Approach

Sun, R.; Hsieh, K. L.; Sosnoff, J. J.

10.1101/410704 — bioengineering — Posted on 2018-09-06

2160 Concestor kinase activation mechanism uncovers the cyclin dependence of CDK family kinases.

Shamsi, Z.; Shukla, D.

10.1101/410902 — evolutionary biology — Posted on 2018-09-06

2161 Neuronal firing rates diverge during REM and homogenize during non-REM

Miyawaki, H.; Watson, B.; Diba, K.

10.1101/069237 — neuroscience — Posted on 2018-09-06

2162 SimulateCNVs: a novel software application for simulating CNVs in WES and WGS data

Xing, Y.; Dabney, A. R.; Li, X.; Casola, C.

10.1101/407486 — bioinformatics — Posted on 2018-09-06

2163 Genome-wide interaction study of a proxy for stress-sensitivity and its prediction of major depressive disorder

Arnau-Soler, A.; Adams, M.; Generation Scotland, ; Hayward, C.; Thomson, P.

10.1101/194290 — genetics — Posted on 2018-09-06

2164 Parallel pattern of differentiation at a genomic island shared between clinal and mosaic hybrid zones in a complex of cryptic seahorse lineages

Riquet, F.; Liautard-Haag, C.; Woodall, L.; Bouza, C.; Louisy, P.; Hamer, B.; Otero-Ferrer, F.; Aublanc, P.; Beduneau, V.; Briard, O.; El Ayari, T.; Hochscheid, S.; Belkhir, K.; Arnaud-Haond, S.; Gagnaire, P.-A.; Bierne, N.

10.1101/161786 — evolutionary biology — Posted on 2018-09-06

2165 Using Arterial Spin Labelling to Investigate Spontaneous and Evoked Ongoing Musculoskeletal Pain

Wartolowska, K. A.; Bulte, D. P.; Chappell, M. A.; Jenkinson, M.; Okell, T. W.; Webster, M.; Carr, A. J.

10.1101/163196 — neuroscience — Posted on 2018-09-06

2166 Mi-2/NuRD complex protects stem cell progeny from mitogenic Notch signalling

Zacharioudaki, E.; Falo Sanjuan, J.; Bray, S.

10.1101/410332 — developmental biology — Posted on 2018-09-06

2167 Survival and ice nucleation activity of Pseudomonas syringae strains exposed to simulated high-altitude atmospheric conditions

Araujo, G. G.; Rodrigues, F.; Goncalves, F. L. T.; Galante, D.

10.1101/408906 — microbiology — Posted on 2018-09-06

2168 Non-synonymous to synonymous substitutions suggest that orthologs tend to keep their functions, while paralogs are a source of functional novelty

Esposito, M.; Moreno-Hagelsieb, G.

10.1101/354704 — evolutionary biology — Posted on 2018-09-06

2169 Evaluation of 1, 4, 7-Triazacyclononane (TACN) as a potential Metallo-B-Lactamase inhibitor in Enterobacteriaceae: Restoring the Activity of B-lactams

Somboro, A. M.; Amoako, D. G.; Osei Sekyere, J.; Kumalo, H. M.; Khan, R.; Bester, L.; Essack, S.

10.1101/366146 — microbiology — Posted on 2018-09-06

2170 Immune genes are hotspots of shared positive selection across birds and mammals

Shultz, A. J.; Sackton, T. B.

10.1101/398362 — evolutionary biology — Posted on 2018-09-06

2171 Stochastic Variational Inference for BayesianPhylogenetics: A Case of CAT Model

Dang, T.; Kishino, H.

10.1101/358747 — bioinformatics — Posted on 2018-09-06

2172 The Human Default Consciousness and its Disruption: Insights from an EEG Study of Buddhist Jhana Meditation

Dennison, P.

10.1101/407544 — neuroscience — Posted on 2018-09-06

2173 Functional analysis of Scratch2 domains: implications in the evolution of Snail transcriptional repressors

Kanno, T. Y. N.; Fogo, M. S.; Vieceli, F. M.; Goes, C. P.; Yan, C. Y. I.

10.1101/410761 — evolutionary biology — Posted on 2018-09-06

2174 A SKI subcomplex specifically required for the degradation of ribosome-free RNA regions

Zhang, E.; Khanna, V.; Namane, A.; Doyen, A.; Dacheux, E.; Turcotte, B.; Jacquier, A.; Fromont-Racine, M.

10.1101/409490 — molecular biology — Posted on 2018-09-06

2175 Diet influences early microbiota development in dairy calves without long-term impacts on milk production

Dill-McFarland, K. A.; Weimer, P. J.; Breaker, J. D.; Suen, G.

10.1101/408898 — microbiology — Posted on 2018-09-06

2176 Innolysins: A novel approach to engineer endolysins to kill Gram-negative bacteria

Zampara, A.; Sorensen, M. C. H.; Grimon, D.; Antenucci, F.; Briers, Y.; Brondsted, L.

10.1101/408948 — microbiology — Posted on 2018-09-06

2177 Identifying protein subsets and features responsible for improved drug repurposing accuracies using the CANDO platform

Mangione, W.; Samudrala, R.

10.1101/405837 — bioinformatics — Posted on 2018-09-06

2178 Involving patients and publics in medical and health care research studies: an exploratory survey on participant recruiting and representativeness from the perspective of study authors

Lander, J.; Langhof, H.; Dierks, M.-L.

10.1101/410480 — scientific communication and education — Posted on 2018-09-06

2179 Several phased siRNA annotation methods can produce frequent false-positives for 24 nucleotide RNA-dominated loci in plants

Polydore, S.; Lunardon, A.; Axtell, M. J.

10.1101/409417 — plant biology — Posted on 2018-09-06

2180 Long-term phenotypic effects following vitrified-thawed embryo transfer in a rabbit model

Marco-Jimenez, F.; Canizares, J.; Penaranda, D. S.; Garcia-Dominguez, X.; Vicente, J. S.; Estruch, G.; Blanca, J. M.; Garcia-Carpintero, V.

10.1101/410514 — developmental biology — Posted on 2018-09-06

2181 PhenoMeNal: Processing and analysis of Metabolomics data in the Cloud

Peters, K.; Bradbury, J.; Bergmann, S.; Capuccini, M.; Cascante, M.; de Atauri, P.; Ebbels, T.; Foguet, C.; Glen, R.; Gonzalez-Beltran, A.; Handakas, E.; Hankemeier, T.; Herman, S.; Haug, K.; Holub, P.; Izzo, M.; Jacob, D.; Johnson, D.; Jourdan, F.; Kale, N.; Karaman, I.; Khalili, B.; Emami Khoonsari, P.; Kultima, K.; Lampa, S.; Larsson, A.; Moreno, P.; Neumann, S.; Novella, J. A.; O'Donovan, C.; Pearce, J. T.; Peluso, A.; Pireddu, L.; Piras, M. E.; Reed, M. A.; Rocca-Serra, P.; Roger, P.; Rosato, A.; Rueedi, R.; Ruttkies, C.; Sadawi, N.; Salek, R.; Sansone, S.-A.; Selivanov, V.; Spjuth, O.;

10.1101/409151 — bioinformatics — Posted on 2018-09-06

2182 SimulateCNVs: a novel software application for simulating CNVs in WES and WGS data

Xing, Y.; Dabney, A. R.; Li, X.; Casola, C.

10.1101/407486 — bioinformatics — Posted on 2018-09-06

2183 A Novel Method for the Capture-based Purification of Whole Viral Native RNA Genomes

Tan, C. C. S.; Maurer-Stroh, S.; Wan, Y.; Sessions, O. M.; de Sessions, P. F.

10.1101/410282 — genomics — Posted on 2018-09-06

2184 Temporal dynamics of bacterial and fungal communities during the infection of Brassica rapa roots by the protist Plasmodiophora brassicae

Mougel, C.; Lebreton, L.; Guillerm-Erckelboudt, A.-Y.; Gazengel, K.; Linglin, J.; Ourry, M.; Glory, P.; Sarniguet, A.; Daval, S.; Manzanares-Dauleux, M. J.

10.1101/410555 — ecology — Posted on 2018-09-06

2185 Transcriptomic characterization of signaling pathways associated with osteoblastic differentiation of MC-3T3E1 cells

Luttrell, L. M.; Dar, M. S.; Gesty-Palmer, D.; El-Shewy, H. M.; Robinson, K. M.; Haycraft, C. J.; Barth, J. L.

10.1101/410597 — cell biology — Posted on 2018-09-06

2186 Structural ensembles based on NMR parameters suggest a complex pathway of ligand binding in human gastrotropin

Harmat, Z.; Szabo, A. L.; Toke, O.; Gaspari, Z.

10.1101/409383 — bioinformatics — Posted on 2018-09-06

2187 Improved inference of chromosome conformation from images of labeled loci

Ross, B. C.; Costello, J. C.

10.1101/409847 — bioinformatics — Posted on 2018-09-06

2188 How will changes in local climate affect hawksbill hatchling production in Brazil?

Montero, N.; Marcovaldi, M. . G.; Lopez-Mendilaharsu, M.; Santos, A. S.; Santos, A. J. B.; Fuentes, M. M. P. B.

10.1101/410498 — zoology — Posted on 2018-09-06

2189 Cross-sectional and longitudinal research approaches: running pace and step characteristics of elite athletes in the 400-m hurdles

Otsuka, M.; Isaka, T.

10.1101/410464 — physiology — Posted on 2018-09-06

2190 Xdrop: targeted sequencing of long DNA molecules from low input samples using droplet sorting

Madsen, E. B.; Kvist, T.; Hoijer, I.; Ameur, A.; Mikkelsen, M. J.

10.1101/409086 — genomics — Posted on 2018-09-06

2191 Evolutionary branching of host resistance induced by density-dependent mortality

Zu, J.; Fu, S.; Li, M.; Gu, Y.

10.1101/410589 — evolutionary biology — Posted on 2018-09-06

2192 MoMo: Discovery of statistically significant post-translational modification motifs

Cheng, A.; Grant, C. E.; Noble, W. S.; Bailey, T. L.

10.1101/410050 — bioinformatics — Posted on 2018-09-06

2193 Regenerative capacity in the lamprey spinal cord is not altered after a repeated transection

Hanslik, K. L.; Allen, S. R.; Harkenrider, T. L.; Fogerson, S. M.; Guadarrama, E.; Morgan, J.

10.1101/410530 — neuroscience — Posted on 2018-09-06

2194 Deletion of autism risk gene Shank3 disrupts prefrontal connectivity

Pagani, M.; Bertero, A.; Liska, A.; Galbusera, A.; Sabbioni, M.; Scattoni, M. L.; Pasqualetti, M.; Gozzi, A.

10.1101/409284 — neuroscience — Posted on 2018-09-06

2195 Focal disruption of temporal cortex in macaque during midbrain-induced neglect

Bogadhi, A. R.; Bollimunta, A.; Krauzlis, R. J.; Leopold, D. A.

10.1101/410233 — neuroscience — Posted on 2018-09-06

2196 BDNF Val66Met moderates the relationship between cardiorespiratory fitness and memory in cognitively normal older adults

Brown, B. M.; Castalanelli, N.; Rainey-Smith, S. R.; Doecke, J.; Weinborn, M.; Sohrabi, H. R.; Laws, S. M.; Martins, R. N.; Peiffer, J. J.

10.1101/408955 — neuroscience — Posted on 2018-09-06

2197 A Chromosome-level Sequence Assembly Reveals the Structure of the Arabidopsis thaliana Nd-1 Genome and its Gene Set

Pucker, B.; Holtgraewe, D.; Stadermann, K. B.; Frey, K.; Huettel, B.; Reinhardt, R.; Weisshaar, B.

10.1101/407627 — genomics — Posted on 2018-09-06

2198 The controlled direct effect of temperament at 2-3 years on cognitive and academic outcomes at 6-7 years

Chong, S. Y.; Chittleborough, C. R.; Gregory, T.; Lynch, J.; Mittinty, M.; Smithers, L. G.

10.1101/410506 — epidemiology — Posted on 2018-09-06

2199 Improved Characterization of the Solution Kinetics and Thermodynamics of Biotin, Biocytin and HABA Binding to Avidin and Streptavidin.

Delgadillo, R. F.; Mueser, T. C.; Zaleta-Rivera, K. M.; Carnes, K. A.; Gonzalez-Valdez,, J.; Parkhurst, L. J.

10.1101/410548 — biophysics — Posted on 2018-09-06

2200 EMT network-based feature selection improves prognosis prediction in lung adenocarcinoma

Shao, B.; Bjaanaes, M.; Helland, A.; Schütte, C.; Conrad, T.

10.1101/410472 — bioinformatics — Posted on 2018-09-06

2201 Visualisation and analysis of RNA-Seq assembly graphs

Nazarie, F. W.; Shih, B. B.; Angus, T.; Barnett, M. W.; Chen, S.-H.; Summers, K. M.; Klein, K.; Faulkner, G. J.; Saini, H. K.; Watson, M.; van Dongen, S.; Enright, A. J.; Freeman, T. C.

10.1101/409573 — bioinformatics — Posted on 2018-09-06

2202 Optimal diameter reduction ratio of acinar airways in human lungs

Park, K.; Son, T.; Cho, Y.-J.; Jeon, N. L.; Kim, W.; Kim, H.-Y.

10.1101/410522 — bioengineering — Posted on 2018-09-06

2203 Comparison of null models for combination drug therapy reveals Hand model as biochemically most plausible

Sinzger, M.; Vanhoefer, J.; Loos, C.; Hasenauer, J.

10.1101/409946 — systems biology — Posted on 2018-09-06

2204 Taxonomic revision of Leopold and Rudolf Blaschka Glass Models of Invertebrates 1888 Catalogue, with correction of authorities

Callaghan, E.; Egger, B.; Doyle, H.; REYNAUD, E. G.

10.1101/408260 — scientific communication and education — Posted on 2018-09-06

2205 Microglia limit lesion expansion and promote functional recovery after spinal cord injury in mice

Brennan, F. H.; Hall, J. C. E.; Guan, Z.; Popovich, P. G.

10.1101/410258 — neuroscience — Posted on 2018-09-06

2206 Mutation of influenza A virus PA-X decreases pathogenicity in chicken embryos and can increase the yield of reassortant candidate vaccine viruses

Hussain, S.; Turnbull, M. L.; Wise, H. M.; Jagger, B. W.; Beard, P. M.; Kovacikova, K.; Taubenberger, J. K.; Vervelde, L.; Engelhardt, O. G.; Digard, P.

10.1101/409375 — microbiology — Posted on 2018-09-06

2207 CluSim: a Python package for the comparison of clusterings and dendrograms

Gates, A. J.; Ahn, Y.-Y.

10.1101/410084 — bioinformatics — Posted on 2018-09-06

2208 Automated EEG mega-analysis I: Spectral and amplitude characteristics across studies

Bigdely-Shamlo, N.; Touryan, J.; Ojeda, A.; Kothe, C.; Mullen, T.; Robbins, K.

10.1101/409631 — neuroscience — Posted on 2018-09-06

2209 Various evolutionary trajectories lead to loss of the tobramycin-potentiating activity of the quorum sensing inhibitor baicalin hydrate in Burkholderia cenocepacia biofilms

Sass, A.; Slachmuylders, L.; Van Acker, H.; Vandenbussche, I.; Ostyn, L.; Crabbe, A.; Chiarelli, L.; Buroni, S.; Van Nieuwerburgh, F.; Abatih, E.; Coenye, T.

10.1101/409078 — microbiology — Posted on 2018-09-06

2210 Full-length transcript characterization of SF3B1 mutation in chronic lymphocytic leukemia reveals downregulation of retained introns

Tang, A. D.; Soulette, C. M.; van Baren, M. J.; Hart, K.; Hrabeta-Robinson, E.; Wu, C. J.; Brooks, A. N.

10.1101/410183 — genomics — Posted on 2018-09-06

2211 miRBaseConverter: An R/Bioconductor Package for Converting and Retrieving miRNA Name, Accession, Sequence and Family Information in Different Versions of miRBase

Xu, T.; Su, N.; Liu, L.; Zhang, J.; Wang, H.; Gui, J.; Yu, K.; Li, J.; Le, T. D.

10.1101/407148 — genomics — Posted on 2018-09-06

2212 Landscape permeability and individual variation in a dispersal-linked gene jointly determine genetic structure in the Glanville fritillary butterfly

DiLeo, M. F.; Husby, A.; Saastamoinen, M.

10.1101/409003 — evolutionary biology — Posted on 2018-09-06

2213 VIRULIGN: fast codon-correct alignment and annotation of viral genomes

Libin, P.; Deforche, K.; Theys, K.; Abecasis, A.

10.1101/409052 — bioinformatics — Posted on 2018-09-06

2214 Extracting information from RNA SHAPE data: Kalman filtering approach

Vaziri, S.; Koehl, P.; Aviran, S.

10.1101/408872 — bioinformatics — Posted on 2018-09-06

2215 Radiomics Analysis Using Stability Selection Supervised Principal Component Analysis for Right-censored Survival Data

Yan, K. K.; Wang, X.; Lam, W.; Vardhanabhuti, V.; Lee, A. W. M.; Pang, H.

10.1101/408831 — bioinformatics — Posted on 2018-09-06

2216 Generality and opponency of rostromedial tegmental (RMTg) roles in valence processing

Li, H.; Pullmann, D.; Cho, J. Y.; Eid, M.; Jhou, T.

10.1101/410308 — neuroscience — Posted on 2018-09-06

2217 2.8 A resolution cryo-EM structure of human parechovirus 3 in complex with Fab from a neutralizing antibody

Domanska, A.; Flatt, J. W.; Jukonen, J. J. J.; Geraets, J. A.; Butcher, S. J.

10.1101/410217 — microbiology — Posted on 2018-09-06

2218 Why Are CD8 T Cell Epitopes of Human Influenza A Virus Conserved?

Li, Z.-R. T.; Zarnitsyna, V. I.; Lowen, A. C.; Weissman, D.; Koelle, K.; Kohlmeier, J.; Antia, R.

10.1101/408880 — immunology — Posted on 2018-09-06

2219 Relative Principal Components Analysis: Application to Analyzing Biomolecular Conformational Changes

Ahmad, M.; Helms, V.; Kalinina, O. V.; Lengauer, T.

10.1101/409474 — biophysics — Posted on 2018-09-06

2220 Flexible backbone assembly and refinement of symmetrical homomeric complexes

Roy Burman, S. S.; Yovanno, R. A.; Gray, J. J.

10.1101/409730 — biophysics — Posted on 2018-09-06

2221 Humanized Monoclonal Antibody Rescues Rhesus macaques from Aerosolized Ricin Toxin Exposure

Roy, C. J.; Ehrbar, D.; Bohorova, N.; Bohorov, O.; Kim, D.; Pauley, M.; Whaley, K.; Rong, Y.; Torres-Velez, F. J.; Vitetta, E.; Didier, P. J.; Doyle-Meyers, L.; Zeitlin, L.; Mantis, N.

10.1101/407817 — immunology — Posted on 2018-09-06

2222 Maternal Circulating MicroRNAs Control the Placental Response to Alcohol

Tseng, A. M.; Mahnke, A. H.; Wells, A. B.; Salem, N. A.; Allan, A. M.; Roberts, V. H. J.; Newman, N.; Walter, N. A. R.; Kroenke, C. D.; Grant, K. A.; Akison, L. K.; Moritz, K. M.; Chambers, C. D.; Miranda, R. C.

10.1101/409854 — developmental biology — Posted on 2018-09-06

2223 Efficient genome editing of human natural killer cells by CRISPR RNP

Rautela, J.; Surgenor, E.; HUNTINGTON, N. D.

10.1101/406934 — immunology — Posted on 2018-09-06

2224 Ancestry informative alleles captured with reduced representation library sequencing in Theobroma cacao

Osorio-Guarin, J. A.; Quackenbush, C. E.; Cornejo, O. E.

10.1101/407387 — genomics — Posted on 2018-09-05

2225 Herd protection against Plasmodium falciparum infections conferred by mass antimalarial drug administrations and the implications for malaria elimination

Parker, D. M.; Tun, S. T. T.; White, L. J.; Kajeechiwa, L.; Thwin, M. M.; Landier, J.; Chaumeau, V.; Corbel, V.; Dondorp, A. M.; von Seidlein, L.; White, N. J.; Maude, R. J.; Nosten, F. H.

10.1101/393843 — epidemiology — Posted on 2018-09-05

2226 Systematic functional characterization of the intellectual disability-associated SWI/SNF complex reveals distinct roles for the BAP and PBAP complexes in post-mitotic memory forming neurons of the Drosophila mushroom body

Chubak, M. C.; Stone, M. H.; Raun, N.; Rice, S. L.; Sarikahya, M.; Jones, S. G.; Lyons, T. A.; Jakub, T. E.; Mainland, R. L.; Knip, M. J.; Edwards, T. N.; Kramer, J.

10.1101/408500 — neuroscience — Posted on 2018-09-05

2227 Efficacy of fecal sampling as a gut proxy in the study of chicken gut microbiota

Yan, W.; Zheng, J.; WEN, C.; Ji, C.; Zhang, D.; Chen, Y.; Sun, C.; Yang, N.

10.1101/313577 — microbiology — Posted on 2018-09-05

2228 The complex architecture and epigenomic impact of plant T-DNA insertions

Jupe, F.; Rivkin, A. C.; Michael, T. P.; Zander, M.; Motley, S. T.; Sandoval, J. P.; Slotkin, K. R.; Chen, H.; Castanon, R.; Nery, J. R.; Ecker, J. R.

10.1101/282772 — plant biology — Posted on 2018-09-05

2229 An essential checkpoint for TLR9 signaling is release from 1 Unc93b1 in endosomes

Majer, O.; Woo, B.; Liu, B.; Van Dis, E.; Barton, G.

10.1101/410092 — immunology — Posted on 2018-09-05

2230 Unc93b1 recruits Syntenin-1 to dampen TLR7 signaling and prevent autoimmunity

Majer, O.; Liu, B.; Krogan, N.; Barton, G.

10.1101/409862 — immunology — Posted on 2018-09-05

2231 Agronomic Linked Data (AgroLD): a Knowledge-based System to Enable Integrative Biology in Agronomy

Venkatesan, A.; Tagny Ngompe, G.; Hassouni, N. E.; Chentli, I.; Guignon, V.; Jonquet, C.; Ruiz, M.; Larmande, P.

10.1101/325423 — bioinformatics — Posted on 2018-09-05

2232 Inferring high-dimensional pathways of trait acquisition in evolution and disease

Greenbury, S. F.; Barahona, M.; Johnston, I. G.

10.1101/409656 — bioinformatics — Posted on 2018-09-05

2233 FUS controls the processing of snoRNAs into smaller RNA fragments that can regulate gene expression

Plewka, P.; Szczesniak, M.; Stepien, A.; Zywicki, M.; Pacak, A.; Colombo, M.; Makalowska, I.; Ruepp, M.-D.; Raczynska, K. D.

10.1101/409250 — molecular biology — Posted on 2018-09-05

2234 A remorin from Nicotiana benthamiana interacts with the Pseudomonas type-III effector protein HopZ1a and is phosphorylated by the immune-related kinase PBS1

Albers, P.; Ustun, S.; Witzel, K.; Kraner, M.; Bornke, F.

10.1101/409235 — plant biology — Posted on 2018-09-05

2235 Trace-based correction of breathing-induced field fluctuations in T2*-weighted imaging of the spinal cord

Vannesjo, S. J.; Clare, S.; Kasper, L.; Tracey, I.; Miller, K. L.

10.1101/406371 — neuroscience — Posted on 2018-09-05

2236 A SKI subcomplex specifically required for the degradation of ribosome-free RNA regions

Fromont-Racine, M.; Zhang, E.; Khanna, V.; Namane, A.; Doyen, A.; Dacheux, E.; Turcotte, B.; Jacquier, A.

10.1101/409490 — molecular biology — Posted on 2018-09-05

2237 Reversing Time Averaging and Reconstructing Extinction Rates with Approaches from Image Processing

Hohmann, N.

10.1101/408864 — paleontology — Posted on 2018-09-05

2238 Distinct pathogenic genes causing intellectual disability and autism exhibit overlapping effects on neuronal network development

Frega, M.; Selten, M.; Mossink, B.; Keller, J. M.; Linda, K.; Moerschen, R.; Qu, J.; Koerner, P.; Jansen, S.; Bijvank, E.; Oudakker, A.; Kleefstra, T.; van Bokhoven, H.; Zhou, H.; Schubert, D.; Nadif Kasri, N.

10.1101/408252 — neuroscience — Posted on 2018-09-05

2239 Landscape of stimulation-responsive chromatin across diverse human immune cells

Calderon, D.; Nguyen, M. L. T.; Mezger, A.; Kathiria, A.; Nguyen, V.; Lescano, N.; Wu, B.; Trombetta, J.; Ribado, J. V.; Knowles, D. A.; Gao, Z.; Parent, A. V.; Burt, T. D.; Anderson, M. S.; Criswell, L. A.; Greenleaf, W. J.; Marson, A.; Pritchard, J. K.

10.1101/409722 — genomics — Posted on 2018-09-05

2240 Estimation of realized rates of genetic gain and indicators for breeding program assessment

Rutkoski, J.

10.1101/409342 — genetics — Posted on 2018-09-05

2241 Identification of novel protein lysine acetyltransferasesin Escherichia coli

Christensen, D. G.; Meyer, J. G.; Baumgartner, J. T.; D'Souza, A. K.; Nelson, W. C.; Payne, S. H.; Kuhn, M. L.; Schilling, B.; Wolfe, A. J.

10.1101/408930 — microbiology — Posted on 2018-09-05

2242 A Type I Restriction-Modification System Associated with Enterococcus faecium Subspecies Separation

Huo, W.; Adams, H. M.; Trejo, C.; Badia, R.; Palmer, K. L.

10.1101/408914 — microbiology — Posted on 2018-09-05

2243 Behavioral Analysis of Substrate Texture Preference in a Leech, Helobdella austinensis

Kim, R. C.; Le, D.; Ma, K.; Heath-Heckman, E. A. C.; Whitehorn, N.; Kristan, W. B.; Weisblat, D. A.

10.1101/409755 — animal behavior and cognition — Posted on 2018-09-05

2244 Sexual conflict in self-fertile hermaphrodites: reproductive differences among species, and between individuals versus cohorts, in the leech genus Helobdella (Lophotrochozoa; Annelida; Clitellata; Hirudinida; Glossiphoniidae)

Iyer, R. G.; Rogers, D. V.; Winchell, C. J.; Weisblat, D. A.

10.1101/401901 — zoology — Posted on 2018-09-05

2245 Integrative analysis of Paneth cell proteomic data from intestinal organoids reveals functional processes affected in Crohn’s disease due to autophagy impairment

Jones, E.; Matthews, Z.; Gul, L.; Sudhakar, P.; Divekar, D.; Buck, J.; Jefferson, M.; Armstrong, S.; Watson, A.; Carding, S.; Mayer, U.; Powell, P.; Hautefort, I.; Wileman, T.; Korcsmaros, T.

10.1101/410027 — systems biology — Posted on 2018-09-05

2246 Live-Cell Imaging Reveals Enhancer-dependent Sox2 Transcription in the Absence of Enhancer Proximity

Alexander, J. M.; Guan, J.; Huang, B.; Lomvardas, S.; Weiner, O. D.

10.1101/409672 — genetics — Posted on 2018-09-05

2247 Specific detection of cell-free DNA derived from intestinal epithelial cells using methylation patterns

Lehmann-Werman, R.; Zick, A.; Paweletz, C.; Welch, M.; Hubert, A.; Maoz, M.; Davidy, T.; Magenheim, J.; Piyanzin, S.; Neiman, D.; Moss, J.; Golan, H.; Israeli, E.; Fischer, M.; Segal, E.; Grompe, M.; Pikarsky, A.; Golan, T.; Glaser, B.; Shemer, R.; Wolpin, B.; Dor, Y.

10.1101/409219 — developmental biology — Posted on 2018-09-05

2248 Synergy of SMC and Topoisomerase Creates a Universal Pathway to Simplify Genome Topology

Marenduzzo, D.; Orlandini, E.; Michieletto, D.

10.1101/410019 — biophysics — Posted on 2018-09-05

2249 Accounting for ambiguity in ancestral sequence reconstruction

Oliva, A.; Pulicani, S.; Lefort, V.; Brehelin, L.; Guindon, S.

10.1101/409029 — evolutionary biology — Posted on 2018-09-05

2250 Amalgamated cross-species transcriptomes indicate organ-specific preadaptation for functional shifts in gene expression

Fukushima, K.; Pollock, D. D.

10.1101/409888 — evolutionary biology — Posted on 2018-09-05

2251 Loss of TLE3 Promotes Mitochondrial Program in Beige Adipocytes and Improves Glucose Metabolism

Pearson, S.; Loft, A.; Rahbhandari, P.; Simcox, J.; Lee, S.; Donato, A.; Tontonoz, P.; Mandrup, S.; Villanueva, C. J.

10.1101/409748 — developmental biology — Posted on 2018-09-05

2252 Comprehensive Genomic Characterization of Breast Tumors with BRCA1 and BRCA2 Mutations

Lal, A.; Ramazzotti, D.; Weng, Z.; Liu, K.; Ford, J.; Sidow, A.

10.1101/409813 — cancer biology — Posted on 2018-09-05

2253 Molecular Diversity of Intrinsically Photosensitive Ganglion Cells

Berg, D.; Kartheiser, K.; Leyrer, M.; Saali, A.; Berson, D.

10.1101/381004 — neuroscience — Posted on 2018-09-05

2254 Association of age and colostrum discarding with breastfeeding in Ethiopia: systematic review and meta-analyses

Alemu, S. M.; Alemu, Y. M.; Habtewold, T. D.

10.1101/405225 — epidemiology — Posted on 2018-09-05

2255 Chronically-implanted Neuropixels probes enable high yield recordings in freely moving mice

Juavinett, A. L.; Bekheet, G.; Churchland, A. K.

10.1101/406074 — neuroscience — Posted on 2018-09-05

2256 Gelbox - An Interactive Simulation Tool for Gel Electrophoresis

Gingold, C.; Douglas, S. M.

10.1101/406132 — molecular biology — Posted on 2018-09-05

2257 Budding yeast complete DNA replication after chromosome segregation begins

Ivanova, T.; Maier, M.; Missarova, A.; Ziegler-Birling, C.; Carey, L. B.; Mendoza, M.

10.1101/407957 — cell biology — Posted on 2018-09-05

2258 Binding From both sides: TolR and full-length OmpA bind and maintain the local structure of the E. coli cell wall.

Boags, A.; Samsudin, F.; Khalid, S.

10.1101/409466 — biophysics — Posted on 2018-09-05

2259 Human CtIP forms a tetrameric dumbbell-shaped particle which binds and bridges complex DNA end structures for double-strand break repair

Wilkinson, O. J.; Martin-Gonzalez, A.; Kang, H. J.; Northall, S. J.; Wigley, D. B.; Moreno-Herrero, F.; Dillingham, M. S.

10.1101/409102 — biochemistry — Posted on 2018-09-05

2260 Mutant p53 triggers a dynamin-1/APPL1 endosome feedback loop that regulates β1 integrin recycling and migration

Lakoduk, A. M.; Roudot, P.; Mettlen, M.; Grossman, H. M.; Chen, P.-H.; Schmid, S. L.

10.1101/408815 — cell biology — Posted on 2018-09-05

2261 Towards understanding cancer stem cell heterogeneity in the tumor microenvironment

Bocci, F.; Gearhart-Serna, L.; Boareto, M.; Ribeiro, M.; Ben-Jacob, E.; Devi, G. R.; Levine, H.; Onuchic, J. N.; Jolly, M. K.

10.1101/408823 — cancer biology — Posted on 2018-09-05

2262 Kinetic network model to explain gain-of-function mutations in ERK2 enzymes

Misiura, M.; Kolomeisky, A. B.

10.1101/409482 — biophysics — Posted on 2018-09-05

2263 Trafficking of Cholesterol from Lipid Droplets to Mitochondria in Bovine Luteal Cells: Acute Control of Progesterone Synthesis

Plewes, M. R.; Cordes, C.; Przgrodzka, E.; Talbott, H.; Woods, J.; Cupp, A.; Davis, J.

10.1101/409599 — cell biology — Posted on 2018-09-05

2264 DNA-PKcs-mediated phosphorylation of AMPKγ1 regulates lysosomal AMPK activation by LKB1

Puustinen, P.; Keldsbo, A.; Corcelle-Termeau, E.; Ngoei, K. R. W.; Sonder, S. L.; Farkas, T.; Andersen, K.; Oakhill, J. S.; Jäättelä, M.

10.1101/409508 — cell biology — Posted on 2018-09-05

2265 MYO1C facilitates arrival at the Golgi apparatus through stabilization of branched actin

Capmany, A.; Yoshimura, A.; Kerdous, R.; Lescure, A.; Del Nery, E.; Coudrier, E.; Goud, B.; Schauer, K.

10.1101/409110 — cell biology — Posted on 2018-09-05

2266 Mitochondrial network fragmentation modulates mutant mtDNA accumulation independently of absolute fission-fusion rates

Aryaman, J.; Bowles, C.; Jones, N. S.; Johnston, I. G.

10.1101/409128 — cell biology — Posted on 2018-09-05

2267 Acute inhibition of heterotrimeric kinesin-2 function reveals mechanisms of intraflagellar transport in mammalian cilia

Engelke, M. F.; Waas, B.; Kearns, S. E.; Suber, A.; Boss, A.; Allen, B. L.; Verhey, K. J.

10.1101/409318 — cell biology — Posted on 2018-09-05

2268 The entopeduncular nucleus drives lateral habenula responses to negative but not positive or neutral affective stimuli

Li, H.; Pullmann, D.; Jhou, T.

10.1101/408963 — neuroscience — Posted on 2018-09-05

2269 The latency of a visual evoked potential tracks the onset of decision making

Nunez, M. D.; Gosai, A.; Vandekerckhove, J.; Srinivasan, R.

10.1101/275727 — neuroscience — Posted on 2018-09-05

2270 Hv1 channel supports insulin secretion in pancreatic β cells through calcium entry, depolarization and intracellular pH regulation

Pang, H.; Wang, X.; Xi, W.; Zhao, Q.; Zhang, S.; Qin, J.; Lv, J.; Che, Y.; Zuo, W.; Li, S. J.

10.1101/097816 — cell biology — Posted on 2018-09-05

2271 Extra-field activity shifts the place field center of mass to encode aversion experience

Mamad, O.; Agayby, B.; Stumpp, L.; Reilly, R. B.; Tsanov, M.

10.1101/218180 — neuroscience — Posted on 2018-09-05

2272 T cell immunity does not age in a long-lived rodent species

Izraelson, M.; Nakonechnaya, T. O.; Davydov, A. N.; Dronina, M. A.; Miskevich, D. A.; Mamedov, I. Z.; Barbashova, L. N.; Shugay, M.; Bolotin, D.; Staroverov, D. B.; Kondratyuk, E. Y.; Bogdanova, E. A.; Lukyanov, S.; Shams, I.; Britanova, O. V.; Chudakov, D. M.

10.1101/259374 — immunology — Posted on 2018-09-05

2273 Comprehensive and empirical evaluation of machine learning algorithms for LC retention time prediction

Bouwmeester, R.; Martens, L.; Degroeve, S.

10.1101/259168 — bioinformatics — Posted on 2018-09-05

2274 The role of Aβ circRNA in Alzheimer’s disease: alternative mechanism of Aβ biogenesis from Aβ circRNA translation

Mo, D.; Cui, D.; Li, X.

10.1101/260968 — neuroscience — Posted on 2018-09-05

2275 Interaction modulation through arrays of clustered methyl-arginine protein modifications

Woodsmith, J.; Casado-Medrano, V.; Benlasfer, N.; Eccles, R.; Hutten, S.; Heine, C.; Thormann, V.; Abou-Ajram, C.; Rocks, O.; Dormann, D.; Stelzl, U.

10.1101/289041 — cell biology — Posted on 2018-09-05

2276 Representation of auditory motion directions and sound source locations in the human planum temporale

Battal, C.; Rezk, M.; Mattioni, S.; Vadlamudi, J.; Collignon, O.

10.1101/302497 — neuroscience — Posted on 2018-09-05

2277 Gas seepage pockmark microbiomes suggest the presence of sedimentary coal seams in the Oxarfjordur graben of NE-Iceland

Thorsteinsdottir, G. V.; Blischke, A.; Sigurbjornsdottir, A.; Oskarsson, F.; Arnarson, T. S.; Magnusson, K. P.; Vilhelmsson, O.

10.1101/348011 — microbiology — Posted on 2018-09-05

2278 RNA-antimicrobial peptide complexes activate a self-sustaining TLR- and NETosis-mediated cycle of neutrophil activation

Herster, F.; Bittner, Z.; Dickhoefer, S.; Eisel, D.; Eigenbrod, T.; Knorpp, T.; Schneiderhan-Marra, N.; Loeffler, M. W.; Hartl, D.; Freund, L.; Schaekel, K.; Heiser, M.; Ghoreschi, K.; Weber, A. N. R.

10.1101/324814 — immunology — Posted on 2018-09-05

2279 Localizing and classifying adaptive targets with trend filtered regression

Mughal, M. R.; DeGiorgio, M.

10.1101/320523 — evolutionary biology — Posted on 2018-09-05

2280 Enhanced bottom-up and reduced top-down neural mechanisms drive long-lasting non-reinforced behavioral change

Botvinik-Nezer, R.; Salomon, T.; Schonberg, T.

10.1101/363044 — neuroscience — Posted on 2018-09-05

2281 Autism-associated Shank3 is essential for homeostatic plasticity and neuronal circuit stability

Tatavarty, V.; Torrado Pacheco, A.; Lin, H.; Miska, N. J.; Hengen, K. B.; Wagner, F. F.; Turrigiano, G. G.

10.1101/365445 — neuroscience — Posted on 2018-09-05

2282 Spatiotemporal Analysis of Category and Target-related Information Processing in the Brain during Object Detection

Karimi Rouzbahani, H.; Vahab, E.; Ebrahimpour, R.; Menhaj, M. B.

10.1101/361642 — neuroscience — Posted on 2018-09-05

2283 An efficient timer and sizer of protein motions reveals the time scales of functional dynamics in the ribosome

Chan, J.; Lin, H.-R.; Takemura, K.; Chang, K.-C.; Chang, Y.-Y.; Joti, Y.; Kitao, A.; Yang, L.-W.

10.1101/384511 — biophysics — Posted on 2018-09-05

2284 Targeting a Therapy-Resistant Cancer Cell State Using Masked Electrophiles as GPX4 Inhibitors

Eaton, J. K.; Furst, L.; Ruberto, R. A.; Moosmayer, D.; Hillig, R. C.; Hilpmann, A.; Zimmermann, K.; Ryan, M. J.; Niehues, M.; Badock, V.; Kramm, A.; Chen, S.; Clemons, P. A.; Gradl, S.; Montagnon, C.; Lazarski, K. E.; Christian, S.; Bajrami, B.; Neuhaus, R.; Eheim, A. L.; Viswanathan, V. S.; Schreiber, S. L.

10.1101/376764 — biochemistry — Posted on 2018-09-05

2285 Two-step concentration of complex water samples for the detection of viruses

Farkas, K.; McDonald, J. E.; Malham, S. K.; Jones, D. L.

10.1101/386060 — microbiology — Posted on 2018-09-05

2286 Predicting the future direction of cell movement with convolutional neural networks

Nishimoto, S.; Tokuoka, Y.; Yamada, T. G.; Hiroi, N. F.; Funahashi, A.

10.1101/388033 — systems biology — Posted on 2018-09-05

2287 The capsule regulatory network of Klebsiella pneumoniae defined by density-TraDISort

Dorman, M. J.; Feltwell, T.; Goulding, D.; Parkhill, J.; Short, F. L.

10.1101/404400 — microbiology — Posted on 2018-09-05

2288 What is the impact of gender of new-born, antenatal care and postnatal care on breastfeeding practices in Ethiopia? A systematic review and meta-analysis

Habtewold, T. D.; Sharew, N. T. T.; Alemu, S. M.

10.1101/405605 — epidemiology — Posted on 2018-09-05

2289 ECM deposition is driven by caveolin1-dependent regulation of exosomal biogenesis and cargo sorting

Albacete-Albacete, L.; Navarro-Lerida, I.; Lopez, J. A.; Martin-Padura, I.; Astudillo, A. M.; Van-Der-Heyden, M.; Balsinde, J.; Orend, G.; Vazquez, J.; del Pozo, M. A.

10.1101/405506 — cell biology — Posted on 2018-09-05

2290 Genomic, transcriptomic, and structural analysis of Pseudomonas virus PA5oct highlights the molecular complexity among Jumbo phages

Danis-Wlodarczyk, K.; Blasdel, B. G.; Jang, H. B.; Vandenheuvel, D.; Noben, J.-P.; Drulis-Kawa, Z.; Lavigne, R.

10.1101/406421 — genomics — Posted on 2018-09-05

2291 Ancestral Reconstruction of Protein Interaction Networks

Liebeskind, B.; Aldrich, R. W.; Marcotte, E. M.

10.1101/408773 — evolutionary biology — Posted on 2018-09-05

2292 SeqTailor: a user-friendly webserver for the extraction of DNA or protein sequences from next-generation sequencing data

Zhang, P.; Boisson, B.; Casanova, J.-L.; Abel, L.; Itan, Y.

10.1101/408625 — bioinformatics — Posted on 2018-09-05

2293 Viewing pictures triggers rapid morphological enlargement in the human visual cortex

Mansson, K. N. T.; Cortes, D. S.; Manzouri, A.; Hau, S.; Fischer, H.

10.1101/408658 — neuroscience — Posted on 2018-09-05

2294 An Artificial Intelligence Workflow for Defining Host-Pathogen Interactions

Fisch, D. H.; Yakimovich, A.; Clough, B.; Wright, J.; Bunyan, M.; Howell, M.; Mercer, J.; Frickel, E.-M.

10.1101/408450 — microbiology — Posted on 2018-09-05

2295 HPCI: A Perl module for writing cluster-portable bioinformatics pipelines

Macdonald, J. M.; Lalansingh, C. M.; Cooper, C. I.; Yang, A.; Lam, F.; Boutros, P. C.

10.1101/408666 — bioinformatics — Posted on 2018-09-05

2296 Cultural background influences electrical stimulation effects on the social brain

Martin, A. K.; Su, P.; Meinzer, M.

10.1101/408799 — neuroscience — Posted on 2018-09-05

2297 Brain-Score: Which Artificial Neural Network for Object Recognition is most Brain-Like?

Schrimpf, M.; Kubilius, J.; Hong, H.; Majaj, N. J.; Rajalingham, R.; Issa, E. B.; Kar, K.; Bashivan, P.; Prescott-Roy, J.; Schmidt, K.; Yamins, D. L. K.; DiCarlo, J. J.

10.1101/407007 — neuroscience — Posted on 2018-09-05

2298 Recovery and analysis of transcriptome subsets from pooled single-cell RNA-seq libraries

Riemondy, K. A.; Ransom, M.; Alderman, C.; Gillen, A. E.; Fu, R.; Finlay-Schultz, J.; Kirkpatrick, G.; Di Paola, J.; Kabos, P.; Sartorius, C. A.; Hesselberth, J. R.

10.1101/408740 — genomics — Posted on 2018-09-05

2299 Different analysis methods of Scottish and English child physical activity data explain the majority of the difference between the national prevalence estimates

Williamson, C.; Kelly, P.; Strain, T.

10.1101/408179 — epidemiology — Posted on 2018-09-05

2300 Rapid energy expenditure estimation for assisted and inclined loaded walking

Slade, P.; Troutman, R.; Kochenderfer, M. J.; Collins, S. H.; Delp, S. L.

10.1101/401836 — bioengineering — Posted on 2018-09-05

2301 Modulation of electrocorticographic seizure features predicts response to closed-loop brain stimulation

Kokkinos, V.; Sisterson, N. D.; Wozny, T. A.; Richardson, R. M.

10.1101/408567 — neuroscience — Posted on 2018-09-05

2302 Trends in millennial adolescent mental health and health related behaviours over ten years: a population cohort comparison study

Patalay, P.; Gage, S.

10.1101/407585 — epidemiology — Posted on 2018-09-05

2303 Field evaluation of malachite green loop-mediated isothermal amplification as a malaria parasite detection tool in a health post in Roraima state, Brazil

Kudyba, H. M.; Louzada, J.; Ljolje, D.; Kudyba, K. A.; Muralidharan, V.; Oliveira-Ferreira, J.; Lucchi, N. W.

10.1101/408609 — epidemiology — Posted on 2018-09-05

2304 Association of age and colostrum discarding with breastfeeding in Ethiopia: systematic review and meta-analyses

Alemu, S. M.; Alemu, Y. M.; Habtewold, T.

10.1101/405225 — epidemiology — Posted on 2018-09-05

2305 Post-Hurricane Vital Statistics Expose Fragility of Puerto Rico’s Health System

Acosta, R. J.; Irizarry, R. A.

10.1101/407874 — epidemiology — Posted on 2018-09-05

2306 What is the impact of gender of new-born, antenatal care and postnatal care on breastfeeding practices in Ethiopia? A systematic review and meta-analysis

Habtewold, T. D.; Sharew, N. T.; Alemu, S. M.

10.1101/405605 — epidemiology — Posted on 2018-09-05

2307 Prospective randomized controlled study directly comparing tadalafil and tamsulosin for male patients with lower urinary tract symptoms.

Takeuchi, T.; Toyokawa, S.; Okuno, Y.; Ishida, N.; Yamagoe, M.; Zaitsu, M.; MIkami, K.

10.1101/404566 — clinical trials — Posted on 2018-09-05

2308 Phylogenetic Diversity and Anti-MRSA Activity of Halotolerant Actinobacteria from sediments in Great Salt Plains, Oklahoma.

Gad, A. H.

10.1101/112649 — microbiology — Posted on 2018-09-05

2309 Secondary structure of pre-mRNA introns for genes of 15q11-12 locus. Mapping of functionally significant motives of RNA binding proteins and f nucleosome positioning signals

Fedoseyeva, V. B.; Zharinova, I. A.; Alexandrov, A. A.

10.1101/409243 — molecular biology — Posted on 2018-09-05

2310 Deep sequencing of circulating exosomal microRNA allows non-invasive glioblastoma diagnosis

Ebrahimkhani, S.; Vafaee, F.; Hallal, S.; Wei, H.; Lee, M.; Young, P.; Satgunaseelan, L.; Shivalingam, B.; Suter, C.; Buckland, M.; Kaufman, K.

10.1101/342154 — pathology — Posted on 2018-09-04

2311 Human genome-edited hematopoietic stem cells phenotypically correct Mucopolysaccharidosis type I

Gomez-Ospina, N.; Scharenberg, S. G.; Mostrel, N.; Bak, R. O.; Mantri, S.; Quadros, R. M.; Gurumurthy, C. B.; Lee, C.; Bao, G.; Aurelian, L.; Porteus, M.

10.1101/408757 — genetics — Posted on 2018-09-04

2312 Cryo-EM structure of the mechanically activated ion channel OSCA1.2

Jojoa Cruz, S.; Saotome, K.; Murthy, S. E.; Tsui, C. C.; Sansom, M. S. P.; Patapoutian, A.; Ward, A. B.

10.1101/408716 — biophysics — Posted on 2018-09-04

2313 OSCA/TMEM63 are an Evolutionarily Conserved Family of Mechanically Activated Ion Channels

Murthy, S.; Dubin, A.; Whitwam, T.; Jojoa Cruz, S.; Cahalan, S.; Mosavi, S. A. R.; Ward, A.; Patapoutian, A.

10.1101/408732 — biophysics — Posted on 2018-09-04

2314 Dissecting the sharp response of a canonical developmental enhancer reveals multiple sources of cooperativity

Park, J.; Estrada, J.; Johnson, G.; Ricci-Tam, C.; Bragdon, M.; Shulgina, Y.; Cha, A.; Gunawardena, J.; DePace, A. H.

10.1101/408708 — genetics — Posted on 2018-09-04

2315 Simulating human sleep spindle MEG and EEG from ion channel and circuit level dynamics

Rosen, B. Q.; Krishnan, G.; Sanda, P.; Komarov, M.; Sejnowski, T.; Rulkov, N.; Ulbert, I.; Eross, L.; Madsen, J.; Devinsky, O.; Doyle, W.; Fabo, D.; Cash, S.; Bazhenov, M.; Halgren, E.

10.1101/202606 — neuroscience — Posted on 2018-09-04

2316 Draft Aphaenogaster genomes expand our view of ant genome size variation across climate gradients

Lau, M.; Ellison, A. M.; Nguyen, A. D.; Penick, C.; DeMarco, B.; Gotelli, N. J.; Sanders, N. J.; Dunn, R. R.; Helms Cahan, S.

10.1101/302679 — genomics — Posted on 2018-09-04

2317 HMMRATAC, the Hidden Markov ModeleR for ATAC-seq

Tarbell, E. D.; Liu, T.

10.1101/306621 — bioinformatics — Posted on 2018-09-04

2318 The Aquilegia genome: adaptive radiation and an extraordinarily polymorphic chromosome with a unique history

Filiault, D.; Ballerini, E.; Mandakova, T.; Akoz, G.; Derieg, N.; Schmutz, J.; Jenkins, J.; Grimwood, J.; Shu, S.; Hayes, R.; Hellsten, U.; Barry, K.; Yan, J.; Mihaltcheva, S.; Karafiatova, M.; Nizhynska, V.; Lysak, M. A.; Hodges, S.; Nordborg, M.

10.1101/264101 — evolutionary biology — Posted on 2018-09-04

2319 Activation of TAp73 and inhibition of thioredoxin reductase for improved cancer therapy in TP53 mutant pancreatic tumors

Acedo, P.; Fernandes, A.; Zawacka-Pankau, J.

10.1101/398750 — cancer biology — Posted on 2018-09-04

2320 Disentangling eco-evolutionary effects on trait fixation

Czuppon, P.; Gokhale, C. S.

10.1101/259069 — evolutionary biology — Posted on 2018-09-04

2321 PBRM1 regulates stress response in epithelial cells

Porter, E. G.; Dhiman, A.; Chowdhury, B.; Carter, B. C.; Lin, H.; Stewart, J. C.; Kazemian, M.; Wendt, M. K.; Dykhuizen, E.

10.1101/408575 — cell biology — Posted on 2018-09-04

2322 Deep convolutional neural networks for accurate somatic mutation detection

Sahraeian, S. M. E.; Liu, R.; Lau, B.; Mohiyuddin, M.; Lam, H. Y. K.

10.1101/393801 — genomics — Posted on 2018-09-04

2323 Integrin αVβ6-EGFR crosstalk regulates bidirectional force transmission and controls breast cancer invasion

Thomas, J. R.; Moore, K. M.; Sproat, C.; Maldonado, H.; Mo, S.; Haider, S.; Hammond, D. E.; Thomas, G. J.; Prior, I. A.; Cutillas, P. R.; Jones, L. J.; Marshall, J. F.; Morgan, M. R.

10.1101/407908 — cancer biology — Posted on 2018-09-04

2324 Hydrogen exchange protection factors can be extracted from sparse HDX-MS data

Paci, E.; Tuma, R.; Houwing-Duistermaat, J. J.; Radou, G.; Skinner, S.

10.1101/408559 — biophysics — Posted on 2018-09-04

2325 CNVkit-RNA: Copy number inference from RNA-Sequencing data

Talevich, E.; Shain, A. H.

10.1101/408534 — bioinformatics — Posted on 2018-09-04

2326 A pathogen-responsive gene cluster for the production of highly modified fatty acids in tomato

Jeon, J. E.; Kim, J.-G.; Fischer, C. R.; Dufour-Schroif, C.; Wemmer, K.; Mudgett, M. B.; Sattely, E.

10.1101/408518 — plant biology — Posted on 2018-09-04

2327 A General Framework for Variable Selection in Linear Mixed Models with Applications to Genetic Studies with Structured Populations

Bhatnagar, S. R.; Oualkacha, K.; Yang, Y.; Forest, M.; Greenwood, C. M.

10.1101/408484 — bioinformatics — Posted on 2018-09-04

2328 Prediction of Deleterious Single Nucleotide Polymorphisms in Human p53 Gene

Hossain, M. F.; Alam, S.; Sayem, M.; Hasan, M. K.; Sharmin, Z.; Pavel, M. A.

10.1101/408476 — bioinformatics — Posted on 2018-09-04

2329 Stress-induced changes in the S-palmitoylation and S-nitrosylation of synaptic proteins

Zareba-Koziol, M.; Bartkowiak-Kaczmarek, A.; Figiel, I.; Krzystyniak, A.; Wojtowicz, T.; Bijata, M.; Wlodarczyk, J. M.

10.1101/408468 — neuroscience — Posted on 2018-09-04

2330 Real-world expectations and their affective value modulate object processing

Caplette, L.; Gosselin, F.; Mermillod, M.; Wicker, B.

10.1101/408542 — neuroscience — Posted on 2018-09-04

2331 Evaluating analgesic efficacy and administration route following craniotomy in mice using the grimace scale

Cho, C.; Michalidis, V.; Lecker, I.; Collymore, C.; Hanwell, D.; Loka, M.; Danesh, M.; Pham, C.; Urban, P.; Bonin, R.; Martin, L.

10.1101/408443 — neuroscience — Posted on 2018-09-04

2332 Identification of rare-disease genes in diverse undiagnosed cases using whole blood transcriptome sequencing and large control cohorts

Fresard, L.; Smail, C.; Smith, K. S.; Ferraro, N. M.; Teran, N. A.; Kernohan, K. D.; Bonner, D.; Li, X.; Marwaha, S.; Zappala, Z.; Balliu, B.; Davis, J. R.; Liu, B.; Prybol, C. J.; Kholer, J. N.; Zastrow, D. B.; Fisk, D. G.; Grove, M. E.; Davidson, J. M.; Hartley, T.; Joshi, R.; Strober, B. J.; Utiramerur, S.; Care4Rare Canada Consortium, ; Undiagnosed Diseases Network, ; Lind, L.; Ingelsson, E.; Battle, A.; Bejerano, G.; Bernstein, J. A.; Ashley, E. A.; Boycott, K. M.; Merker, J. D.; Wheeler, M. T.; Montgomery, S. B.

10.1101/408492 — genomics — Posted on 2018-09-04

2333 Evolution of preferences in group-structured populations: genes, guns, and culture

Alger, I.; Weibull, J.; Lehmann, L.

10.1101/408435 — evolutionary biology — Posted on 2018-09-04

2334 The dark side of the mean: brain structural heterogeneity in schizophrenia and its polygenic risk.

Alnaes, D.; Kaufmann, T.; van der Meer, D.; Cordova-Palomera, A.; Rokicki, J.; Moberget, T.; Bettella, F.; Agartz, I.; Barch, D. M.; Bertolino, A.; Brandt, C. L.; Cervenka, S.; Djurovic, S.; Doan, N. T.; Eisenacher, S.; Fatouros-Bergman, H.; Flyckt, L.; Di Giorgio, A.; Haatveit, B.; Jonsson, E. G.; KaSP Consortium, ; Kirsch, P.; Lund, M. J.; Meyer-Lindenberg, A.; Pergola, G.; Schwarz, E.; Smeland, O. B.; Quarto, T.; Zink, M.; Andreassen, O. A.; Westlye, L. T.

10.1101/407890 — neuroscience — Posted on 2018-09-04

2335 Modeling long lifespans in eusocial insect populations

Ramaswamy, R.; Donepudi, R.

10.1101/408211 — evolutionary biology — Posted on 2018-09-04

2336 Skewed temperature dependence affects range and abundance in a warming world

Hurford, A.; Cobbold, C. A.; Molnar, P. K.

10.1101/408104 — ecology — Posted on 2018-09-04

2337 Strain maps characterize the symmetry of convergence and extension patterns during Zebrafish gastrulation

Bhattacharya, D.; Zhong, J.; Tavakoli, S.; Kabla, A.; Matsudaira, P.

10.1101/407940 — biophysics — Posted on 2018-09-04

2338 Photon-separation to enhance the spatial resolution in pulsed STED microscopy

Tortarolo, G.; Sun, Y.; Teng, K.-W.; Ishitsuka, Y.; Lanzano, L.; Selvin, P. R.; Barbieri, B.; Diaspro, A.; Vicidomini, G.

10.1101/408286 — biophysics — Posted on 2018-09-04

2339 Bayesian coalescent inference of in-host evolution using Next Generation Sequencing

Leen, G.; Baguelin, M.

10.1101/407965 — bioinformatics — Posted on 2018-09-04

2340 Image analysis for taxonomic identification of Javanese butterflies

de Vetter, S.; Vos, R. A.

10.1101/408146 — bioinformatics — Posted on 2018-09-04

2341 Aperiodic Rhythms of the Inferior Olive

Warnaar, P.; Negrello, M.; Romano, V.; Owens, C. B.; Lindeman, S.; Iavarone, E.; Spanke, J. K.; Bosman, L.; De Zeeuw, C.

10.1101/408112 — neuroscience — Posted on 2018-09-04

2342 VTA dopamine neurons multiplex external with internal representations of goal-directed action

Kremer, Y.; Flakowski, J.; Rohner, C.; Lüscher, C.

10.1101/408062 — neuroscience — Posted on 2018-09-04

2343 Diagnosis and Prognosis Using Machine Learning Trained on Brain Morphometry and White Matter Connectomes

Wang, Y.; Xu, C.; Park, J.-H.; Lee, S.; Stern, Y.; Kim, J. H.; Yoo, S.; Kim, H. S.; Cha, J.

10.1101/255141 — neuroscience — Posted on 2018-09-04

2344 A low-cost DIY device for high resolution, continuous measurement of microbial growth dynamics

Sasidharan, K.; Martinez-Vernon, A. S.; Chen, J.; Fu, T.; Soyer, O.

10.1101/407742 — microbiology — Posted on 2018-09-04

2345 Genome-wide divergence among invasive populations of Aedes aegypti in California

Lee, Y.; Schmidt, H.; Collier, T. C.; Conner, W. R.; Hanemaaijer, M. J.; Slatkin, M.; Marshall, J. M.; Chiu, J. C.; Smartt, C. T.; Lanzaro, G. C.; Mulligan, F. S.; Cornel, A. J.

10.1101/166629 — genomics — Posted on 2018-09-04

2346 Streaming histogram sketching for rapid microbiome analytics

Rowe, W. P.; Carrieri, A. P.; Alcon-Giner, C.; Caim, S.; Shaw, A.; Sim, K.; Kroll, J. S.; Hall, L.; Pyzer-Knapp, E. O.; Winn, M. D.

10.1101/408070 — genomics — Posted on 2018-09-04

2347 Integrin αVβ6-EGFR crosstalk regulates bidirectional force transmission and controls breast cancer invasion

Thomas, J. R.; Moore, K. M.; Sproat, C.; Maldonado, H.; Mo, S.; Haider, S.; Hammond, D. E.; Thomas, G. J.; Prior, I. A.; Cutillas, P. R.; Jones, L. J.; Marshall, J. F.; Morgan, M. R.

10.1101/407908 — cancer biology — Posted on 2018-09-04

2348 Quantifying local malignant adaptation in tissue-specific evolutionary trajectories by harnessing cancer’s repeatability at the genetic level

Tokutomi, N.; Moyret-Lalle, C.; PUISIEUX, A.; Sugano, S.; Martinez, P.

10.1101/401059 — cancer biology — Posted on 2018-09-04

2349 A tunable dual-input system for on-demand dynamic geneexpression regulation.

Pedone, E.; Lazzarini Rocca, D.; Postiglione, L.; Aulicino, F.; Montes-Olivas, S.; di Bernardo, D.; Cosma, M. P.; Marucci, L.

10.1101/404699 — synthetic biology — Posted on 2018-09-04

2350 Planar cell polarity pathway and development of the human visual cortex

10.1101/404558 — neuroscience — Posted on 2018-09-04

2351 Deep Learning for Quality Control of Subcortical Brain 3D Shape Models

Petrov, D.; Gutman, B. A.; Kuznetsov, E.; van Erp, T. G. M.; Turner, J. A.; Schmaal, L.; Veltman, D.; Wang, L.; Alpert, K.; Isaev, D.; Zavaliangos-Petropolu, A.; Ching, C. R. K.; Calhoun, V.; Glahn, D.; Satterthwaite, T. D.; Andreassen, O. A.; Borgwardt, S.; Howells, F.; Groenewold, N.; Voineskos, A.; Radua, J.; Potkin, S. G.; Crespo-Favorro, B.; Tordesillas-Gutirrez, D.; Shen, L.; Lebedeva, I.; Spalletta, G.; Donohoe, G.; Kochunov, P.; Rosa, P. G. P.; James, A.; Dannlowski, U.; Baune, B. T.; Aleman, A.; Gotlib, I. H.; Walter, H.; Walter, M.; Soarez, J. C.; Ehrlich, S.; Gur, R. C.; Doan, N. T.

10.1101/402255 — neuroscience — Posted on 2018-09-04

2352 CORnet: Modeling the Neural Mechanisms of Core Object Recognition

Kubilius, J.; Schrimpf, M.; Nayebi, A.; Bear, D.; Yamins, D. L. K.; DiCarlo, J. J.

10.1101/408385 — neuroscience — Posted on 2018-09-04

2353 The essential genome of the crenarchaeal model Sulfolobus islandicus

Zhang, C.; Phillips, A. P. R.; Wipfler, R. L.; Olsen, G. J.; Whitaker, R. J.

10.1101/408351 — microbiology — Posted on 2018-09-04

2354 A simian-adenovirus-vectored rabies vaccine suitable for thermostabilisation and clinical development for low-cost single-dose pre-exposure prophylaxis

Wang, C.; Dulal, P.; Zhou, X.; Xiang, Z.; Goharriz, H.; Banyard, A.; Green, N.; Brunner, L.; Ventura, R.; Collin, N.; Draper, S. J.; Hill, A. V.; Ashfield, R.; Fooks, A. R.; Ertl, H. C.; Douglas, A.

10.1101/408013 — immunology — Posted on 2018-09-04

2355 Assessing the pathogenicity, penetrance and expressivity of putative disease-causing variants in a population setting

Wright, C. F.; West, B.; Tuke, M.; Jones, S. E.; Patel, K.; Laver, T. W.; Beaumont, R. N.; Tyrrell, J.; Wood, A. R.; Frayling, T. M.; Hattersley, A. T.; Weedon, M. N.

10.1101/407981 — genetics — Posted on 2018-09-04

2356 Genome-skimming provides accurate quantification for pollen mixtures

Lang, D.; Tang, M.; Hu, J.; Zhou, X.

10.1101/408039 — ecology — Posted on 2018-09-04

2357 A systematic review of the relation between species traits and extinction risk

Chichorro, F.; Juslen, A.; Cardoso, P.

10.1101/408096 — ecology — Posted on 2018-09-04

2358 CONFESS: Fluorescence-based single-cell ordering in R

Motakis, E.; H.P. Low, D.

10.1101/407932 — bioinformatics — Posted on 2018-09-04

2359 A Taxonomic Review and Revisions of Microstomidae (Platyhelminthes: Macrostomorpha)

Atherton, S.; Scharer, L.; Jondelius, U.

10.1101/381459 — zoology — Posted on 2018-09-04

2360 Integration of Molecular Interactome and Targeted Interaction Analysis to Identify a COPD Disease Network Module

Sharma, A.; Kitsak, M.; Cho, M. C.; Ameli, A.; Zhou, X.; Jiang, Z.; Crapo, J. D.; Beaty, T. H.; Menche, J.; Bakke, P. S.; Santolini, M.; Silverman, E. K.

10.1101/408229 — systems biology — Posted on 2018-09-04

2361 Modulating CRISPR gene drive activity through nucleocytoplasmic localization of Cas9 in S. cerevisiae

Goeckel, M. E.; Basgall, E. M.; Lewis, I. C.; Goetting, S. C.; Yan, Y.; Halloran, M.; Finnigan, G. C.

10.1101/408369 — synthetic biology — Posted on 2018-09-04

2362 Cell-free gene regulatory network engineering with synthetic transcription factors

Swank, Z.; Laohakunakorn, N.; Maerkl, S. J.

10.1101/407999 — synthetic biology — Posted on 2018-09-04

2363 Differences in Therapeutic Efficacy in Pancreatic Cancer Between Interstitial and Superficial Light Delivery Strategies in Targeted Photo Therapy

De Magalhaes, N.

10.1101/408021 — pathology — Posted on 2018-09-04

2364 Estimation of time to contact in lateral motion and approach motion

Daneshi, A.

10.1101/408310 — neuroscience — Posted on 2018-09-04

2365 Topological Reinforcement as a Principle of Modularity Emergence in Brain Networks

Damicelli, F.; Hilgetag, C. C.; Hütt, M.-T.; Messe, A.

10.1101/408278 — neuroscience — Posted on 2018-09-04

2366 Local structural connectivity directs seizure spread in focal epilepsy

Shah, P.; Ashourvan, A.; Mikhail, F.; Pines, A.; Kini, L.; Shinohara, R. T.; Bassett, D. S.; Litt, B.; Davis, K. A.

10.1101/406793 — neuroscience — Posted on 2018-09-04

2367 Estimating HLA disease associations using similarity trees

van Dorp, C.; Kesmir, C.

10.1101/408302 — immunology — Posted on 2018-09-04

2368 Efficient estimation of evolutionary rates by covariance aware regression

Neher, R. A.

10.1101/408005 — evolutionary biology — Posted on 2018-09-04

2369 GADMA: Genetic Algorithm for Automatic Inferring Joint Demographic History of Multiple Populations from Allele Frequency Spectrum

Noskova, E.; Ulyantsev, V.; O'Brien, S. J.; Dobrynin, P.

10.1101/407734 — evolutionary biology — Posted on 2018-09-04

2370 Spider mites escape bacterial infection by avoiding contaminated food

Zele, F.; Santos Matos, G.; Figueiredo, A.; Eira, C.; Pinto, C.; Laurentino, T. G.; Sucena, E.; Magalhaes, S.

10.1101/408203 — ecology — Posted on 2018-09-04

2371 Remotely sensed indicators and open-access biodiversity data to assess bird diversity patterns in Mediterranean rural landscapes.

Ribeiro, I.; Proenca, V.; Serra, P. R.; Palma, J.; Domingo, C.; Pons, X.; Domingos, T.

10.1101/408187 — ecology — Posted on 2018-09-04

2372 The Ciliopathy Gene Ftm/Rpgrip1l Controls Mouse Forebrain Patterning Via Region-Specific Modulation Of Hedgehog/Gli Signaling.

Andreu-Cervera, A.; Anselme, I.; Karam, A.; Catala, M.; Schneider-Maunoury, S.

10.1101/408120 — developmental biology — Posted on 2018-09-04

2373 c-Myc inhibition is critical for HSC expansion and Rad51 expression

Aksoz, M.; Albayrak, E.; Aslan, G. S.; Turan, R. D.; Alyazici, L. Y.; Siyah, P.; Tuysuz, E. C.; Canikyan, S.; Yucel, D.; Meric, N.; Gulbas, Z.; Sahin, F.; Kocabas, F.

10.1101/403584 — cell biology — Posted on 2018-09-04

2374 A contraction stress model of hypertrophic cardiomyopathy due to thick filament sarcomere mutations

Cohn, R.; Thakar, K.; Lowe, A.; Ladha, F.; Pettinato, A.; Meredith, E.; Chen, Y.-s.; Atamanuk, K.; Huey, B.; Hinson, J. T.

10.1101/408294 — cell biology — Posted on 2018-09-04

2375 An inhibitor-interaction intermediate of HIV-1 protease, revealed by Isothermal Titration Calorimetry and NMR spectroscopy

Khan, S. N.; Persons, J. D.; Guerrero, M.; Ilina, T. V.; Oda, M.; Ishima, R.

10.1101/404996 — biochemistry — Posted on 2018-09-04

2376 Overview of biomedical and public health reviews in Ethiopia from 1970 to 2018: trends, methodological qualities, gaps and future directions

Habtewold, T. D.; Alemu, S. M.; Mohammed, S. H.; Endalamaw, A.; Mohammed, M. A.; Tefera, A. A.; Tura, A. K.; Asefa, N. G.; Tegegne, B. S.

10.1101/405555 — scientific communication and education — Posted on 2018-09-04

2377 Reverse genetic screen reveals that Il34 facilitates yolk sac macrophage distribution and seeding of the brain

Kuil, L. E.; Oosterhof, N.; Geurts, S. N.; van der Linde, H. C.; Meijering, E.; van Ham, T. J.

10.1101/406553 — developmental biology — Posted on 2018-09-04

2378 Human perceptuo-motor decision-making is not optimal

Adkins, T. J.; Lewis, R. L.; Lee, T. G.

10.1101/406439 — animal behavior and cognition — Posted on 2018-09-04

2379 gpps: An ILP-based approach for inferring cancer progression with mutation losses from single cell data

Ciccolella, S.; Soto Gomez, M.; Patterson, M.; Della Vedova, G.; Hajirasouliha, I.; Bonizzoni, P.

10.1101/365635 — cancer biology — Posted on 2018-09-04

2380 Characterization of influenza B virus variants with reduced neuraminidase inhibitor susceptibility

Farrukee, R.; Zarebski, A. E.; McCaw, J. M.; Bloom, J. D.; Reading, P. C.; Hurt, A. C.

10.1101/334201 — microbiology — Posted on 2018-09-04

2381 Addressing Gaps in HIV Preexposure Prophylaxis Care to Reduce Racial Disparities in HIV Incidence in the United States

Jenness, S. M.; Maloney, K. M.; Smith, D. K.; Hoover, K. W.; Goodreau, S. M.; Rosenberg, E. S.; Weiss, K. M.; Liu, A. Y.; Rao, D.; Sullivan, P. S.

10.1101/249540 — epidemiology — Posted on 2018-09-04

2382 Robust, real-time and autonomous monitoring of ecosystems with an open, low-cost, networked device

Sethi, S. S.; Ewers, R. M.; Jones, N. S.; Orme, D.; Picinali, L.

10.1101/236075 — ecology — Posted on 2018-09-04

2383 Centromeric CENP-A loading requires accurate mitotic timing, which is linked to checkpoint proteins

Pauleau, A.-L.; Bergner, A.; Kajtez, J.; Erhardt, S.

10.1101/394981 — cell biology — Posted on 2018-09-04

2384 Palaeobiological inferences based on long bone epiphyseal and diaphyseal structure - the forelimb of xenarthrans (Mammalia)

Amson, E.; Nyakatura, J. A.

10.1101/318121 — paleontology — Posted on 2018-09-04

2385 ASICS: an R package for a whole analysis workflow of 1D 1H NMR spectra

Lefort, G.; Liaubet, L.; Canlet, C.; Tardivel, P.; Pere, M.-C.; Quesnel, H.; Paris, A.; Iannuccelli, N.; Vialaneix, N.; Servien, R.

10.1101/407924 — systems biology — Posted on 2018-09-04

2386 The Human Default Consciousness and its Disruption: Insights from an EEG Study of Buddhist Jhana Meditation

Dennison, P.

10.1101/407544 — neuroscience — Posted on 2018-09-04

2387 Characterizing the nonlinear structure of shared variability in cortical neuron populations using neural networks

Whiteway, M. R.; Socha, K.; Bonin, V.; Butts, D. A.

10.1101/407858 — neuroscience — Posted on 2018-09-04

2388 snakePipes enable flexible, scalable and integrative epigenomic analysis

Bhardwaj, V.; Heyne, S.; Sikora, K.; Rabbani, L.; Rauer, M.; Kilpert, F.; Richter, A. S.; Ryan, D. P.; Manke, T.

10.1101/407312 — genomics — Posted on 2018-09-04

2389 DeepMQ: A Deep Learning Approach Based Myelin Quantification in Microscopic Fluorescence Images

Cimen, S.; Capar, A.; Ekinci, D. A.; Ayten, U. E.; Kerman, B. E.; Toreyin, B. U.

10.1101/407643 — neuroscience — Posted on 2018-09-04

2390 Non-parametric physiological classification of retinal ganglion cells

Jouty, J.; Hilgen, G.; Sernagor, E.; Hennig, M.

10.1101/407635 — neuroscience — Posted on 2018-09-04

2391 Evidence for gene-environment correlation in child feeding: Links between common genetic variation for BMI in children and parental feeding practices

Selzam, S.; McAdams, T. A.; Coleman, J. R. I.; Carnell, S.; O'Reilly, P. F.; Plomin, R.; Llewellyn, C. H.

10.1101/407221 — genomics — Posted on 2018-09-04

2392 CHEMOMETRIC APPROACHES FOR DEVELOPING INFRARED NANOSENSORS TO IMAGE ANTHRACYCLINES

Del Bonis-O Donnell, J. T.; Pinals, R.; Jeong, S.; Thakrar, A.; Wolfinger, R.; Landry, M. P.

10.1101/407650 — biochemistry — Posted on 2018-09-04

2393 Modular preprocessing pipelines can reintroduce artifacts into fMRI data

Lindquist, M.; Geuter, S.; Wager, T.; Caffo, B.

10.1101/407676 — neuroscience — Posted on 2018-09-04

2394 Large-scale intrinsic connectivity is consistent across varying task demands

Kieliba, P.; Madugula, S.; Filippini, N.; Duff, E. P.; Makin, T. R.

10.1101/407205 — neuroscience — Posted on 2018-09-04

2395 Gender differences in post-stroke aphasia rates are caused by age. A meta-analysis and database query

Wallentin, M.

10.1101/407296 — neuroscience — Posted on 2018-09-04

2396 Estimation of task-based modulations in functional connectivity with MEG: a comparison of methods

Soto, J. L.; Jerbi, K.

10.1101/407213 — neuroscience — Posted on 2018-09-04

2397 Heart evoked brain oscillatory networks and its interruption in early stages of Alzheimer’s disease

Castellanos, N.; Diez, G. G.; Pereda, E.; Lopez, M. E.; Bruna, R.; Bartolome, M. G.; Maestu, F.

10.1101/407361 — neuroscience — Posted on 2018-09-04

2398 Coordinate based meta-analysis of networks in neuroimaging studies

Tench, C.; Tanasescu, R.; Constantinescu, C.; Auer, D.; Cottam, W.

10.1101/407270 — neuroscience — Posted on 2018-09-04

2399 The accessible chromatin landscape of the hippocampus at single-cell resolution

Sinnamon, J. R.; Torkenczy, K. A.; Linhoff, M. W.; Vitak, S. A.; Pliner, H. A.; Trapnell, C.; Steemers, F. J.; Mandel, G.; Adey, A. C.

10.1101/407668 — neuroscience — Posted on 2018-09-04

2400 Galleria mellonella as an infection model for the multi-host pathogen Streptococcus agalactiae reflects hypervirulence of ST283

Six, A.; Kranjangwong, S.; Crumlish, M.; Zadoks, R.; Walker, D.

10.1101/407171 — microbiology — Posted on 2018-09-04

2401 Global metabolomic characterizations of Microcystis spp. highlights clonal diversity in natural bloom-forming populations and expands metabolite structural diversity

Marie, B.; Le Manach, S.; Duval, C.; Marie, A.; Djediat, C.; Catherine, A.; Edery, M.; Zirah, S.; Bernard, C.

10.1101/407189 — microbiology — Posted on 2018-09-04

2402 ADP-heptose is a pathogen-associated molecular pattern of Shigella flexneri infection

Garcia-Weber, D.; Dangeard, A.-S.; Cornil, J.; Thai, L.; Rytter, H.; Mulard, L.; Arrieumerlou, C.

10.1101/407262 — immunology — Posted on 2018-09-04

2403 Genome duplication and reorganization in Aquilegia

Aköz, G.; Nordborg, M.

10.1101/407973 — genomics — Posted on 2018-09-04

2404 Label free 3D analysis of organelles in living cells by refractive index shows pre-mitotic organelle spinning in mammalian stem cells

Sandoz, P. A.; Tremblay, C.; Equis, S.; Pop, S.; Pollaro, L.; Cotte, Y.; van der Goot, G. F.; Frechin, M.

10.1101/407239 — cell biology — Posted on 2018-09-04

2405 Iron and Heme Coordinate Erythropoiesis through HRI-Mediated Regulation of Protein Translation and Gene Expression

Zhang, S.; Macias-Garcia, A.; Ulirsch, J. C.; Velazquez, J.; Butty, V. L.; Levine, S. S.; Sankaran, V. G.; Chen, J.-J.

10.1101/408054 — cell biology — Posted on 2018-09-04

2406 The Soft Vertex Classification for Active Module Identification Problem

Alexeev, N.; Isomurodov, J.; Korotkevich, G.; Sergushichev, A.

10.1101/407460 — systems biology — Posted on 2018-09-04

2407 Studying 3D cell cultures in a microfluidic droplet array under multiple time-resolved conditions

Tomasi, R.; Sart, S.; Champetier, T.; Baroud, C.

10.1101/407759 — bioengineering — Posted on 2018-09-04

2408 Chemical blueprints to identifying fire ants: overview on venom alkaloids

Fox, E. G. P.

10.1101/407775 — zoology — Posted on 2018-09-04

2409 A Flexible Model of Working Memory

Bouchacourt, F.; Buschman, T. J.

10.1101/407700 — neuroscience — Posted on 2018-09-04

2410 HIV-1 Vpr accessory protein interacts with REAF and mitigates its associated anti-viral activity.

Gibbons, J. M.; Marno, K. M.; Pike, R.; Lee, W.-y. J.; Jones, C. E.; Ogunkolade, B. W.; Pardieu, C.; Warnes, G.; Rowley, P. A.; Sloan, R. D.; McKnight, A.

10.1101/408161 — microbiology — Posted on 2018-09-04

2411 How good are pathogenicity predictors in detecting benign variants?

Vihinen, M.; Niroula, A.

10.1101/408153 — bioinformatics — Posted on 2018-09-04

2412 Overview of biomedical and public health reviews in Ethiopia from 1970 to 2018: trends, methodological qualities, gaps and future directions

Habtewold, T. D.; Alemu, S. M.; Mohammed, S. H.; Endalamaw, A.; Mohammed, M. A.; Tefera, A. A.; Tura, A. K.; Asefa, N. G.; Tegegne, B. S.

10.1101/405555 — scientific communication and education — Posted on 2018-09-04

2413 Diagnosis and Prognosis Using Machine Learning Trained on BrainMorphometry and White Matter Connectomes

Wang, Y.; Xu, C.; Park, J.-H.; Lee, S.; Stern, Y.; Yoo, S.; Kim, J. H.; Kim, H. S.; Cha, J.

10.1101/407601 — neuroscience — Posted on 2018-09-04

2414 Tree-sequence recording in SLiM opens new horizons for forward-time simulation of whole genomes

Haller, B. C.; Galloway, J.; Kelleher, J.; Messer, P. W.; Ralph, P. L.

10.1101/407783 — evolutionary biology — Posted on 2018-09-04

2415 Meta-population structure and the evolutionary transition to multicellularity

Rose, C. J.; Hammerschmidt, K.; Rainey, P. B.

10.1101/407163 — evolutionary biology — Posted on 2018-09-04

2416 Modeling slow-processing of toxin messenger RNAs in type-I Toxin-Antitoxin systems: post-segregational killing and noise filtering

Himeoka, Y.; Mitarai, N.

10.1101/407288 — systems biology — Posted on 2018-09-04

2417 Accurate Determination of Human CPR Conformational Equilibrium by smFRET using Dual Orthogonal Non-Canonical Amino Acid Labeling

Quast, R. B.; Fatemi, F.; Kranendonk, M.; Margeat, E.; Truan, G.

10.1101/407684 — biochemistry — Posted on 2018-09-04

2418 USP21 and OTUD3 Antagonize Regulatory Ribosomal Ubiquitylation and Ribosome-Associated Quality Control

Garshott, D. M.; Sundaramoorthy, E.; Leonard, M.; Bennett, E. J.

10.1101/407726 — molecular biology — Posted on 2018-09-04

2419 Charting DENR-dependent translation reinitiation uncovers predictive uORF features and links to circadian timekeeping via Clock

Castelo-Szekely, V.; De Matos, M.; Gatfield, D.

10.1101/407551 — genomics — Posted on 2018-09-04

2420 Eps8 is a convergence point integrating EGFR and integrin trafficking and crosstalk

Paul, N.; Thomas, J. R.; Maldonado, H.; Wolanska, K. I.; Koper, E.; Humphries, J. D.; Byron, A.; George, A.; Allen, N.; Prior, I.; Streuli, C.; Humphries, M.; Morgan, M. R.

10.1101/405043 — cell biology — Posted on 2018-09-04

2421 Musashi binding elements in Zika and related Flavivirus 3’UTRs: A comparative study in silico

de Bernardi Schneider, A.; Wolfinger, M. T.

10.1101/407833 — bioinformatics — Posted on 2018-09-04

2422 Expanded Analysis of the Pantoea stewartii subsp. stewartii DC283 Complete Genome Reveals Plasmid-borne Virulence Factors

Duong, D. A.; Stevens, A. M.; Jensen, R. V.

10.1101/407825 — bioinformatics — Posted on 2018-09-04

2423 Taxonomic Classification of Ants (Formicidae) from Images using Deep Learning

Boer, M. J. A.; Vos, R. A.

10.1101/407452 — bioinformatics — Posted on 2018-09-04

2424 Chromatin rewiring mediates programmed evolvability via aneuploidy

Brimmacombe, C.; Burke, J.; Parsa, J.-Y.; Witchley, J.; Burrack, L.; Madhani, H.; Noble, S.

10.1101/407841 — genetics — Posted on 2018-09-03

2425 A role for Gic1 and Gic2 in Cdc42 polarization

Daniels, C.; Zyla, T. R.; Lew, D.

10.1101/407569 — cell biology — Posted on 2018-09-03

2426 A systematic genome-wide mapping of the oncogenic risks associated with CRISPR-Cas9 editing

Sinha, S.; Cheng, K.; Leiserson, M. D.; Wilson, D. M.; Ryan, B. M.; Lee, J. S.; Ruppin, E.

10.1101/407767 — cancer biology — Posted on 2018-09-03

2427 A deep learning framework for imputing missing values in genomic data

Qiu, Y. L.; Zheng, H.; Gevaert, O.

10.1101/406066 — bioinformatics — Posted on 2018-09-03

2428 Draxin alters laminin expression during basement membrane reorganization to control cranial neural crest EMT

Hutchins, E. J.; Bronner, M. E.

10.1101/407882 — developmental biology — Posted on 2018-09-03

2429 Temperature-responsive competitive inhibition of CRISPR-Cas9

Jiang, F.; Liu, J.-J.; Osuna, B. A.; Xu, M.; Berry, J. D.; Rauch, B. J.; Nogales, E.; Bondy-Denomy, J.; Doudna, J. A.

10.1101/407718 — biochemistry — Posted on 2018-09-03

2430 Nested oscillatory dynamics in cortical organoids model early human brain network development

Trujillo, C. A.; Gao, R.; Negraes, P. D.; Chaim, I. A.; Domissy, A.; Vandenberghe, M.; Devor, A.; Yeo, G. W.; Voytek, B.; Muotri, A. R.

10.1101/358622 — neuroscience — Posted on 2018-09-03

2431 Endopeptidase regulation as a novel function of the Zur-dependent zinc starvation response

Murphy, S. G.; Alvarez, L.; Adams, M. C.; Liu, S.; Chappie, J. S.; Cava, F.; Dörr, T.

10.1101/398487 — microbiology — Posted on 2018-09-03

2432 Endopeptidase regulation as a novel function of the Zur-dependent zinc starvation response

Murphy, S. G.; Alvarez, L.; Adams, M. C.; Liu, S.; Chappie, J. S.; Cava, F.; Dörr, T.

10.1101/398487 — microbiology — Posted on 2018-09-03

2433 Migration through a small pore disrupts inactive chromatin organisation in neutrophil-like cells

Jacobson, E. C.; Perry, J. K.; Long, D. S.; Olins, A. L.; Olins, D. E.; Wright, B. E.; Vickers, M. H.; O'Sullivan, J. M.

10.1101/339085 — genomics — Posted on 2018-09-03

2434 Evolutionary design of regulatory control. I. A robust control theory analysis of tradeoffs

Frank, S. A.

10.1101/332999 — evolutionary biology — Posted on 2018-09-03

2435 Gp78 E3 ubiquitin ligase mediates both basal and damage-induced mitophagy

Joshi, B.; Mohammadzadeh, Y.; Gao, G.; Nabi, I. R.

10.1101/407593 — cell biology — Posted on 2018-09-03

2436 Comprehensive analysis of human hookworm secreted proteins using a proteogenomic approach

Logan, J.; Manda, S. S.; Choi, Y.-J.; Field, M.; Eichenberger, R.; Mulvenna, J.; Nagaraj, S.; Fujiwara, R.; Gazzinelli-Guimaraes, P.; Bueno, L.; Mati, V.; Mitreva, M.; Sotillo, J.; Loukas, A.

10.1101/406843 — microbiology — Posted on 2018-09-03

2437 Immunological characterization of a rat model of Duchenne’s disease and demonstration of improved muscle strength after anti-CD45RC antibody treatment

Ouisse, L.-H.; Remy, S.; Lafoux, A.; Larcher, T.; Tesson, L.; Chenouard, V.; Guillonneau, C.; Brusselle, L.; Vimond, N.; Rouger, K.; Pereon, Y.; Chenouard, A.; Gras-Le Guen, C.; Braudeau, C.; Josien, R.; Huchet, C.; Anegon, I.

10.1101/407023 — immunology — Posted on 2018-09-03

2438 Functional implications of impaired dynamic cerebral autoregulation in young healthy women; a comparative investigation

Labreque, L.; Rahimaly, K.; Imhoff, S.; Paquette, M.; Le Blanc, O.; Malenfant, S.; Drapeau, A.; Smirl, J. D.; Bailey, D. M.; Brassard, P.

10.1101/406827 — physiology — Posted on 2018-09-03

2439 Reverse genetic screen reveals that Il34 facilitates yolk sac macrophage distribution and seeding of the brain

van Ham, T. J.; Oosterhof, N.; Kuil, L. E.; van der Linde, H. C.; Geurts, S. N.; Meijering, E.

10.1101/406553 — developmental biology — Posted on 2018-09-03

2440 Using natural language processing and machine learning to classify health literacy from secure messages: The ECLIPPSE study

Balyan, R.; Crossley, S. A.; Brown, W.; Karter, A. J.; McNamara, D. S.; Liu, J. Y.; Lyles, C.; Schillinger, D.

10.1101/406876 — bioinformatics — Posted on 2018-09-03

2441 mTADA: a framework for analyzing de novo mutations in multiple traits

Nguyen, H. T.; Dobbyn, A.; Buxbaum, J.; Pinto, D.; Purcell, S. M.; Sullivan, P. F.; He, X.; Stahl, E. A.

10.1101/406868 — genomics — Posted on 2018-09-03

2442 More partners, more ranges: generalist legumes spread more easily around the globe

Harrison, T. L.; Simonsen, A. K.; Stinchcombe, J. R.; Frederickson, M. E.

10.1101/406850 — ecology — Posted on 2018-09-03

2443 Comprehensive Analysis of Indels in Whole-genome Microsatellite Regions and Microsatellite Instability across 21 Cancer Types

Fujimoto, A.; Fujita, M.; Hasegawa, T.; Matsubara, N.; Maejima, K.; Nakano, K.; Oku-Sasaki, A.; Wong, J. H.; Shiraishi, Y.; Miyano, S.; Imoto, S.; Tomita, N.; Stratton, M. R.; Rosen, S. G.; Nakagawa, H.

10.1101/406975 — cancer biology — Posted on 2018-09-03

2444 Learning Protein Structural Fingerprints under the Label-Free Supervision of Domain Knowledge

Min, Y.; Liu, S.; Cui, X.

10.1101/407106 — bioinformatics — Posted on 2018-09-03

2445 Frame Rate Up-Conversion in Echocardiography Images, Using Manifold-Learning and Image Registration

Daneshi, A.; Behnam, H.; Alizadeh Sani, Z.

10.1101/407072 — bioengineering — Posted on 2018-09-03

2446 Transcription activity contributes to the firing of non-constitutive origins in Trypanosoma brucei

da Silva, M. S.; Cayres-Silva, G. R.; Vitarelli, M. O.; Marin, P. A.; Hiraiwa, P. M.; Araujo, C. B.; Avila, A. R.; Reis, M. S.; Elias, M. C.

10.1101/398016 — molecular biology — Posted on 2018-09-03

2447 Capturing diverse microbial sequence with comprehensive and scalable probe design

Metsky, H. C.; Siddle, K. J.; Gladden-Young, A.; Qu, J.; Yang, D. K.; Brehio, P.; Goldfarb, A.; Piantadosi, A.; Wohl, S.; Carter, A.; Lin, A. E.; Barnes, K. G.; Tully, D. C.; Corleis, B.; Hennigan, S.; Barbosa-Lima, G.; Vieira, Y. R.; Paul, L. M.; Tan, A. L.; Garcia, K. F.; Parham, L. A.; Odia, I.; Eromon, P.; Folarin, O. A.; Goba, A.; Viral Hemorrhagic Fever Consortium, ; Simon-Loriere, E.; Hensley, L.; Balmaseda, A.; Harris, E.; Kwon, D.; Allen, T. M.; Runstadler, J. A.; Smole, S.; Bozza, F. A.; Souza, T. M.; Isern, S.; Michael, S. F.; Lorenzana, I.; Gehrke, L.; Bosch, I.; Ebel, G.; Grant,

10.1101/279570 — genomics — Posted on 2018-09-03

2448 Partial reprogramming induces a steady decline in epigenetic age before loss of somatic identity

Olova, N.; Simpson, D. J.; Marioni, R.; Chandra, T.

10.1101/292680 — developmental biology — Posted on 2018-09-03

2449 fMRI salience signals in antipsychotic naive first episode psychosis

Knolle, F.; Ermakova, A. O.; Justicia, A.; Fletcher, P. C.; Bunzeck, N.; Duzel, E.; Murray, G.

10.1101/263020 — neuroscience — Posted on 2018-09-03

2450 Efa6 regulates axon growth, branching and maintenance by eliminating off-track microtubules at the cortex

Qu, Y.; Hahn, I.; Lees, M.; Parkin, J.; Voelzmann, A.; Dorey, K.; Rathbone, A.; Friel, C.; Allan, V.; Okenve-Ramos, P.; Sanchez-Soriano, N.; Prokop, A.

10.1101/385658 — cell biology — Posted on 2018-09-03

2451 ComPath: An ecosystem for exploring, analyzing, and curating mappings across pathway databases

Domingo-Fernandez, D.; Hoyt, C. T.; Bobis Alvarez, C.; Marin-Llao, J.; Hofmann-Apitius, M.

10.1101/353235 — bioinformatics — Posted on 2018-09-03

2452 The Female Heart: Sex Differences in the Dynamics of ECG in Response to Stress

Adjei, T.; Xue, J.; Mandic, D. P.

10.1101/368845 — bioengineering — Posted on 2018-09-03

2453 Why cooperation is not running away

Geoffroy, F.; Baumard, N.; Andre, J.-B.

10.1101/316117 — evolutionary biology — Posted on 2018-09-03

2454 Damage-induced reactive oxygen species enable zebrafish tail regeneration by repositioning of Hedgehog expressing cells.

Roehl, H.; Romero, M. G.; McCathie, G.; Jankun, P.

10.1101/380378 — developmental biology — Posted on 2018-09-03

2455 Bcl-xL inhibition enhances Dinaciclib-induced cell death in soft-tissue sarcomas.

Rello-Varona, S.; Fuentes-Guirado, M.; Lopez-Alemany, R.; Contreras-Perez, A.; Mulet-Margalef, N.; Garcia-Monclus, S.; Tirado, O. M.; Garcia del Muro, X.

10.1101/400986 — cancer biology — Posted on 2018-09-03

2456 NetSurfP-2.0: improved prediction of protein structural features by integrated deep learning

Klausen, M. S.; Jespersen, M. C.; Nielsen, H.; Jensen, K. K.; Jurtz, V. I.; Soenderby, C. K.; Sommer, M. O. A.; Winther, O.; Nielsen, M.; Petersen, B.; Marcatili, P.

10.1101/311209 — bioinformatics — Posted on 2018-09-03

2457 Coupled active systems encode emergent behavioral dynamics of the unicellular predator Lacrymaria olor

Coyle, S. M.; Flaum, E.; Li, H.; Krishnamurthy, D.; Prakash, M.

10.1101/406595 — systems biology — Posted on 2018-09-03

2458 Autophagy is essential for optimal Fe translocation to seeds in Arabidopsis

Pottier, M.; Dumont, J.; Masclaux-Daubresse, C.; Thomine, S.

10.1101/313254 — plant biology — Posted on 2018-09-03

2459 Study of Oak Ridge soils using BONCAT-FACS-Seq reveals that a large fraction of the soil microbiome is active

Couradeau, E.; Sasse, J.; Goudeau, D.; Nath, N.; Hazen, T. C.; Bowen, B. P.; Malmstrom, R. R.; Northen, T. R.

10.1101/404087 — microbiology — Posted on 2018-09-03

2460 Basalin: an evolutionary unconstrained protein revealed via a conserved role in basal plate function

Dean, S.; Moreira-Leite, F.; Gull, K.

10.1101/398230 — cell biology — Posted on 2018-09-03

2461 The evolution of infanticide by females in mammals

Lukas, D.; Huchard, E.

10.1101/405688 — animal behavior and cognition — Posted on 2018-09-03

2462 meaRtools: an R Package for the Analysis of Neuronal Networks Recorded on Microelectrode Arrays

Gelfman, S.; Wang, Q.; Lu, Y.-F.; Hall, D.; Bostick, C.; Dhindsa, R.; Halvorsen, M.; McSweeney, K. M.; Cotterill, E.; Edinburgh, T.; Beaumont, M. A.; Frankel, W. N.; Petrovski, S.; Allen, A. S.; Boland, M. J.; Goldstein, D. B.; Eglen, S. J.

10.1101/242065 — neuroscience — Posted on 2018-09-03

2463 Cost evaluation during decision making in patients at early stages of psychosis

Ermakova, A. O.; Gileadi, N.; Knolle, F.; Justicia Diaz, A.; Anderson, R.; Fletcher, P. C.; Moutoussis, M.; Murray, G.

10.1101/225920 — neuroscience — Posted on 2018-09-03

2464 A size-invariant bud-duration timer enables robustness in yeast cell size control

Allard, C. A. H.; Decker, F.; Weiner, O. D.; Toettcher, J. E.; Graziano, B. R.

10.1101/211714 — cell biology — Posted on 2018-09-03

2465 Blue light is a universal tactic signal for Escherichia coli

Perlova, T.; Gruebele, M.; Chemla, Y. R.

10.1101/211474 — biophysics — Posted on 2018-09-03

2466 Voluntary visual search is modulated by the cardiac cycle

Galvez-Pol, A.; McConnell, R.; Kilner, J.

10.1101/405902 — neuroscience — Posted on 2018-09-03

2467 A transcallosal fiber system between homotopic inferior frontal regions supports complex linguistic processing

Kellmeyer, P.; Vry, M.-S.; Ball, T.

10.1101/079244 — neuroscience — Posted on 2018-09-03

2468 Diversity within the adenovirus fiber knob hypervariable loops influences primary receptor interactions.

Baker, A. T.; Greenshields-Watson, A.; Coughlan, L.; Davies, J. A.; Uusi-Kerttula, H.; Cole, D. K.; Rizkallah, P. J.; Parker, A. L.

10.1101/406819 — microbiology — Posted on 2018-09-03

2469 Quantifying the Entropic and Energetic Effects of Linker Length and Rigidity within Synthetic HIV-1 Antibodies designed to Bind Bivalently to Env Spikes

Galimidi, R. P.; Einav, T.; Gnanapragasam, P. N. P.; Joshi, D. S.; Lynch, A. M.; Yazdi, S.; West, A. P.; Phillips, R.; Bjorkman, P. J.

10.1101/406454 — immunology — Posted on 2018-09-03

2470 Competition for hosts modulates vast antigenic diversity to generate persistent strain structure in Plasmodium falciparum

Pilosof, S.; He, Q.; Tiedje, K. E.; Ruybal-Pesantez, S.; Day, K.; Pascual, M.

10.1101/406546 — ecology — Posted on 2018-09-03

2471 Alterations in swimming behavior of Daphnia exposed to polymer and mineral particles: towards understanding effects of microplastics on planktonic filtrators

Gorokhova, E.; Konnecke, O.; Ogonowski, M.; Gerdes, Z.; Eriksson Wiklund, A.-K.

10.1101/406587 — ecology — Posted on 2018-09-03

2472 RADI (Reduced Alphabet Direct Information): Improving execution time for direct-coupling analysis

Anton, B.; Besalu, M.; Fornes, O.; Bonet, J.; De las Cuevas, G.; Fernandez-Fuentes, N.; Oliva, B.

10.1101/406603 — bioinformatics — Posted on 2018-09-03

2473 BicGO: a new biclustering algorithm based on global optimization

Li, G.; Su, Z.

10.1101/406769 — bioinformatics — Posted on 2018-09-03

2474 Statistical Model of Motor Evoked Potentials for Simulation of Transcranial Magnetic and Electric Stimulation

Goetz, S. M.; Mahdi Alavi, S. M.; Deng, Z.-D.; Peterchev, A. V.

10.1101/406777 — physiology — Posted on 2018-09-03

2475 Explicit neural models for flip-flops and oscillators generate phenomena of short-term memory and electroencephalograms

Yoder, L.

10.1101/403196 — neuroscience — Posted on 2018-09-03

2476 Relative Reduction of the Biological and phylogenetic diversity of oral microbiome in diabetic and pre-diabetic subjects

Saeb, A. T. M.; Al-Rubeaan, K.; Aldosary, K.; Raja, U.; Mani, B.; Abouelhoda, M.; Tayeb, H.

10.1101/406736 — microbiology — Posted on 2018-09-03

2477 Contribution of rare copy number variants to bipolar disorder risk is limited to schizoaffective cases

Charney, A. W.; Stahl, E. A.; Green, E. K.; Chen, C.-Y.; Moran, J. L.; Chambert, K.; Belliveau, R. A.; Forty, L.; Gordon-Smith, K.; Lee, P. H.; Bromet, E. J.; Buckley, P. F.; Escamilla, M. A.; Fanous, A. H.; Fochtmann, L. J.; Lehrer, D. S.; Malaspina, D.; Marder, S. R.; Morley, C. P.; Nicolini, H.; Perkins, D. O.; Rakofsky, J. J.; Rapaport, M. H.; Medeiros, H.; Sobell, J. L.; Backlund, L.; Bergen, S. E.; Jureus, A.; Schalling, M.; Lichtenstein, P.; Knowles, J. A.; Burdick, K. E.; Jones, I.; Jones, L. A.; Hultman, C. A.; Perlis, R.; Purcell, S. M.; McCarroll, S. A.; Pato, C. N.; Pato, M. T.; Di

10.1101/406215 — genetics — Posted on 2018-09-03

2478 High altitude adaptation mitigates anemia risk associated with diabetes among the Mosuo of Southwest China

Su, M.; Wander, K.; Shenk, M. K.; Blumenfield, T.; Li, H.; Mattison, S.

10.1101/406579 — evolutionary biology — Posted on 2018-09-03

2479 Human perception-motor decision-making is not optimal

Adkins, T. J.; Lewis, R. L.; Lee, T. G.

10.1101/406439 — animal behavior and cognition — Posted on 2018-09-03

2480 Genomic, transcriptomic, and structural analysis of Pseudomonas virus PA5oct highlights the molecular complexity among Jumbo phages

Danis-Wlodarczyk, K.; Blasdel, B. G.; Jang, H. B.; Vandenheuvel, D.; Noben, J.-P.; Drulis-Kawa, Z.; Lavigne, R.

10.1101/406421 — genomics — Posted on 2018-09-03

2481 Species-level microbial sequence classification is improved by source-environment information

Kaehler, B. D.; Bokulich, N.; Caporaso, J. G.; Huttley, G. A.

10.1101/406611 — bioinformatics — Posted on 2018-09-03

2482 Evolutionary design of regulatory control. II. Robust error-correcting feedback increases genetic and phenotypic variability

Frank, S. A.

10.1101/405456 — systems biology — Posted on 2018-09-03

2483 Changes in Microorganisms in the Rhizosphere of Mulberry Genotypes with Differing Resistance to Bacterial Wilt

Guo, Y.; Yu, C.; Hu, X.; Deng, W.; Li, Y.; Zhu, Z.; Mo, R.; Dong, Z.

10.1101/407494 — microbiology — Posted on 2018-09-03

2484 millepattes micropeptides are an ancient developmental switch required for embryonic patterning

Ray, S.; Rosenberg, M. I.; Chanut-Delalande, H.; Decaras, A.; Schwertner, B.; Toubiana, W.; Auman, T.; Schnellhammer, I.; Teuscher, M.; Khila, A.; Klingler, M.; Payre, F.

10.1101/376111 — developmental biology — Posted on 2018-09-03

2485 The ER chaperone PfGRP170 is essential for asexual development and is linked to stress response in malaria parasites.

Kudyba, H. M.; Cobb, D. W.; Fierro, M. A.; Florentin, A.; Ljolje, D.; Singh, B.; Lucchi, N. W.; Muralidharan, V.

10.1101/406181 — cell biology — Posted on 2018-09-03

2486 α-Synuclein binds extracellular complex N-linked glycans

Birol, M.; Wojcik, S. P.; Miranker, A. D.; Rhoades, E.

10.1101/407247 — biophysics — Posted on 2018-09-03

2487 Coupled active systems encode emergent behavioral dynamics of the unicellular predator Lacrymaria olor

Coyle, S. M.; Flaum, E.; Li, H.; Krishnamurthy, D.; Prakash, M.

10.1101/406595 — systems biology — Posted on 2018-09-03

2488 Structural Adaptation of Darunavir Analogs Against Primary Resistance Mutations in HIV-1 Protease

Lockbaum, G. J.; Leidner, F.; Rusere, L.; Henes, M.; Kosovrasti, K.; Nalivaika, E. A.; Ali, A.; Kurt Yilmaz, N.; Schiffer, C. A.

10.1101/406637 — molecular biology — Posted on 2018-09-03

2489 Modeling of DNA methylation in cis reveals principles of chromatin folding in vivo in the absence of crosslinking and ligation

Redolfi, J.; Zhan, Y.; Valdes, C.; Kryzhanovska, M.; Misteli Guerreiro, I.; Iesmantavicius, V.; Tiana, G.; Pollex, T.; Kind, J.; Smallwood, S.; de Laat, W.; Giorgetti, L.

10.1101/407031 — genomics — Posted on 2018-09-03

2490 Quantitative Mapping of Free-Standing Lipid Membranes on Nano-Porous Mica Substrates

Costa, L.; Carretero-Genevrier, A.; Ferrain, E.; Milhiet, P.-E.; Picas, L.

10.1101/407254 — biophysics — Posted on 2018-09-03

2491 An essential role for dNTP homeostasis following CDK-induced replication stress

Pai, C.-C.; Hsu, K.-F.; Durley, S. C.; Keszthelyi, A.; Kearsey, S.; Rallis, C.; Folkes, L. K.; Deegan, R.; Wilkins, S. E.; Pfister, S. X.; Leon, N. D.; Schofield, C. J.; Bahler, J.; Carr, A. M.; Humphrey, T.

10.1101/395715 — molecular biology — Posted on 2018-09-03

2492 Multilayered mechanisms ensure that short chromosomes recombine in meiosis

Murakami, H.; Lam, I.; Song, J.; van Overbeek, M.; Keeney, S.

10.1101/406892 — genetics — Posted on 2018-09-03

2493 Gp78 E3 ubiquitin ligase mediates both basal and damage-induced mitophagy

Joshi, B.; Mohammadzadeh, Y.; Gao, G.; Nabi, I. R.

10.1101/407593 — cell biology — Posted on 2018-09-03

2494 Live-cell single-molecule analysis of β2-adrenergic receptor diffusion dynamics and confinement

Schwenzer, N.; Bussmann, H.; Franken, S.; Haeberlein, H.

10.1101/406488 — cell biology — Posted on 2018-09-03

2495 Genetic Circuits to Detect Nanomaterial Triggered Toxicity through Engineered Heat Shock Response Mechanism

Saltepe, B.; Haciosmanoglu, N.; SEKER, U. O. S.

10.1101/406918 — synthetic biology — Posted on 2018-09-03

2496 Fatigue induces long lasting detrimental changes in motor skill learning

Branscheidt, M.; Kassavetis, P.; Rogers, D.; Lindquist, M. A.; Celnik, P.

10.1101/406520 — neuroscience — Posted on 2018-09-03

2497 Transcripts from multicopy gene families localizing to mouse Y long arm encode piRNAs and proteins

Jesudasan, R. A.; Mishra, K.; Annapurna, P.; Chaturvedi, A.; Praveena, N. M.; Alex, J. L.; Karunanidhi, S.; Reddy, H. M.

10.1101/407197 — molecular biology — Posted on 2018-09-03

2498 Intensive and Specific Feedback Self-control of MicroRNA Targeting Activity

Wang, D.; Gill, A.; Zhang, F.

10.1101/406926 — cell biology — Posted on 2018-09-03

2499 Ex vivo dynamics of human glioblastoma cells in a microvasculature-on-a-chip system correlates with tumor heterogeneity and subtypes

Xiao, Y.; Kim, D.; Dura, B.; Zhang, K.; Yan, R.; Li, H.; Han, E.; Ip, J.; Zou, P.; Liu, J.; Chen, A. T.; Vortmeyer, A. O.; Zhou, J.; Fan, R.

10.1101/400739 — bioengineering — Posted on 2018-09-03

2500 The influence of cyclic tensile strain on multi-compartment collagen-GAG scaffolds for tendon-bone junction regeneration

Grier, W. K.; Sun Han Chang, R. A.; Ramsey, M. D.; Harley, B. A. C.

10.1101/406959 — bioengineering — Posted on 2018-09-03

2501 Peroxisomes control mitochondrial dynamics and the mitochondrion-dependent pathway of apoptosis

Tanaka, H.; Okazaki, T.; Yokota, M.; Koike, M.; Okada, Y.; Fujiki, Y.; Gotoh, Y.

10.1101/407098 — cell biology — Posted on 2018-09-03

2502 EEG-based age-prediction models as stable and heritable indicators of brain maturational level in children and adolescents

Vandenbosch, M. M. L. J. Z.; van 't Ent, D.; Boomsma, D. I.; Anokhin, A. P.; Smit, D. J. A.

10.1101/407049 — neuroscience — Posted on 2018-09-03

2503 Wheat avenin-like protein and its significant Fusarium Head Blight resistant functions

Zhang, Y.; Cao, X.; Juhasz, A.; Islam, S.; Qi, P.; She, M.; Zhu, Z.; Hu, X.; Yu, Z.; Wylie, S.; Dowla, M.; Chen, X.; Yang, R.; Xia, X.; Zhang, J.; Zhao, Y.; Shi, N.; Dell, B.; He, Z.; Ma, W.

10.1101/406694 — molecular biology — Posted on 2018-09-03

2504 Microinjection into the Caenorhabditis elegans embryo using an uncoated glass needle enables cell lineage visualization and reveals cell-non-autonomous adhesion control

Kikuchi, Y.; Kimura, A.

10.1101/406991 — cell biology — Posted on 2018-09-03

2505 Endopeptidase regulation as a novel function of the Zur-dependent zinc starvation response

Murphy, S. G.; Alvarez, L.; Adams, M. C.; Liu, S.; Chappie, J. S.; Cava, F.; Dörr, T.

10.1101/398487 — microbiology — Posted on 2018-09-03

2506 The genetic architecture of the human cerebral cortex

10.1101/399402 — genetics — Posted on 2018-09-03

2507 Two-photon frequency division multiplexing for functional in vivo imaging: a feasibility study.

Tsyboulski, D.; Orlova, N.; Ledochowitsch, P.; Saggau, P.

10.1101/405118 — neuroscience — Posted on 2018-09-03

2508 The effect of varied exercise intensity on antioxidant function, and aortic endothelial cell function and serum lipids in a non-alcoholic fatty liver disease rats.

Ruan, L.; Smart, N. A.; Li, F.

10.1101/407395 — physiology — Posted on 2018-09-03

2509 Metagenomic profiling of ticks: identification of novel rickettsial genomes and detection of tick-borne canine parvovirus

Ravi, A.; Ereqat, S.; Al-Jawabreh, A.; Abdeen, Z.; Abu Shamma, O.; Hall, H.; Nasereddin, A.; PALLEN, M. J.

10.1101/407510 — microbiology — Posted on 2018-09-03

2510 Absence of SIV-specific CD8+ T cells in germinal centers may set the stage for persistent infection

Li, S.; Folkvord, J. M.; Kovacs, K. J.; Wagstaff, R. K.; Mwakalundwa, G.; Rendahl, A. K.; Rakasz, E. G.; Connick, E.; Skinner, P. J.

10.1101/407528 — immunology — Posted on 2018-09-03

2511 Predicting Aquatic Development and Mortality Rates of Aedes Aegypti

Zapletal, J.; Gupta, H.; Erraguntla, M.; Adelman, Z. N.; Myles, K. M.; Lawley, M. A.

10.1101/407502 — ecology — Posted on 2018-09-03

2512 Structural instability of IκB kinase β promotes autophagic degradation through enhancement of Keap1 binding

Kamata, H.; Kanamoto, M.; Tsuchiya, Y.; Nakao, Y.; Suzuki, T.; Motohashi, H.; Yamamoto, M.

10.1101/407429 — biochemistry — Posted on 2018-09-03

2513 Sex Differences in Aggression: Differential Roles of 5-HT2, Neuropeptide F and Tachykinin

Bubak, A. N.; Watt, M. J.; Renner, K. J.; Luman, A. A.; Costabile, J. D.; Sanders, E. J.; Grace, J. L.; Swallow, J.

10.1101/407478 — neuroscience — Posted on 2018-09-03

2514 Quality assessment of tissue samples stored in a specialized human lung biobank

Koch, I.; Morresi-Hauf, A.; Stowasser, A.; Hapfelmeier, A.; Hatz, R.; Lindner, M.

10.1101/407411 — molecular biology — Posted on 2018-09-03

2515 RAFTS3G - An efficient and versatile clustering software to analyses in large protein datasets

NICHIO, B. T. D.; de Oliveira, A. M. R.; de Pierri, C. R.; Santos, L. G. C.; Vialle, R. A.; Marchaukoski, J. N.; Pedrosa, F. d. O.; Raittz, R. T.

10.1101/407437 — bioinformatics — Posted on 2018-09-03

2516 Relationships of trainee dentists’ empathy and communication characteristics with simulated patients’ assessment in medical interviews

Watanabe, S.; Yoshida, T.; Kono, T.; Taketa, H.; Shiotsu, N.; Shirai, H.; Torii, Y.

10.1101/407346 — scientific communication and education — Posted on 2018-09-03

2517 Effects of in-vitro pH decrease on the gametogenesis of the red tree coral, Primnoa pacifica

Rossin, A.; Waller, R.; Stone, R.

10.1101/407403 — physiology — Posted on 2018-09-03

2518 New cheloniellid arthropod with large raptorial appendages from the Silurian of Wisconsin, USA

Wendruff, A. J.; Babcock, L.; Mikulic, D.; Kluessendorf, J.

10.1101/407379 — paleontology — Posted on 2018-09-03

2519 Ancestry informative alleles captured with reduced representation library sequencing in Theobroma cacao

Osorio-Guarin, J. A.; Cornejo, O. E.; Quackenbush, C. R.

10.1101/407387 — genomics — Posted on 2018-09-03

2520 Insights into the molecular features of the von Hippel-Lindau like protein

Quaglia, F.; Minervini, G.; Tabaro, F.; Tosatto, S. C. E.

10.1101/407353 — cancer biology — Posted on 2018-09-03

2521 Hygienic behaviour selection via freeze-killed honey bee brood not associated with chalkbrood resistance in eastern Australia

Gerdts, J.; Dewar, R. L.; Simone Finstrom, M.; Edwards, T.; Angove, M.

10.1101/407338 — animal behavior and cognition — Posted on 2018-09-03

2522 Differential requirement of MED14 and UVH6 for heterochromatin transcription upon destabilization of silencing

Bourguet, P.; de Bossoreille, S.; Lopez-Gonzalez, L.; Pouch-Pelissier, M.-N.; Gomez-Zambrano, A.; Devert, A.; Pelissier, T.; Pogorelcnik, R.; Vaillant, I.; Mathieu, O.

10.1101/407015 — plant biology — Posted on 2018-09-03

2523 Structural basis of Toxoplasma gondii Perforin-Like Protein 1 membrane interaction and activity during egress

Guerra, A. J.; Zhang, O.; Bahr, C. M. E.; Huynh, M.-H.; DelProposto, J.; Brown, W. C.; Wawrzak, Z.; Koropatkin, N. M.; Carruthers, V. B.

10.1101/399204 — microbiology — Posted on 2018-09-02

2524 On the Number of Driver Nodes for Controlling a Boolean Network to Attractors

Hou, W.; Ruan, P.; Ching, W.-K.; Akutsu, T.

10.1101/395442 — systems biology — Posted on 2018-09-02

2525 Accurate autocorrelation modeling substantially improves fMRI reliability

Olszowy, W.; Aston, J.; Rua, C.; Williams, G. B.

10.1101/323154 — neuroscience — Posted on 2018-09-02

2526 Sleep and Motor Control by a Basal Ganglia Circuit

Liu, D.; Ma, C.; Zheng, W.; Yao, Y.; Dan, Y.

10.1101/405324 — neuroscience — Posted on 2018-09-02

2527 Vectashield quenches Alexa Fluor 647 fluorescence, but does not hinder dSTORM super-resolution imaging

Arsic, A.; Stajkovic, N.; Spiegel, R.; Nikic-Spiegel, I.

10.1101/393264 — biophysics — Posted on 2018-09-02

2528 \"DoC-feeling\": a new behavioural tool to help diagnose the Minimally Conscious State.

Hermann, B.; Goudard, G.; Courcoux, K.; Valente, M.; Labat, S.; Despois, L.; Bourmaleau, J.; Richard Gillis, L.; Faugeras, F.; Demeret, S.; Sitt, J. D.; Naccache, L.; Rohaut, B.

10.1101/370775 — neuroscience — Posted on 2018-09-02

2529 Density-dependent selection and the limits of relative fitness

Bertram, J.; Masel, J.

10.1101/102087 — evolutionary biology — Posted on 2018-09-02

2530 The Arabidopsis autophagy cargo receptors ATI1 and ATI2 bind to ATG8 via intrinsically disordered regions and are post-translationally modified upon ATG8 interaction

Sjogaard, I. M. Z.; Bressendorff, S.; Prestel, A.; Kausika, S.; Oksbjerg, E.; Kragelund, B. B.; Brodersen, P.

10.1101/406538 — molecular biology — Posted on 2018-09-02

2531 Hydrophobic organic contaminants are not linked to microplastic uptake in Baltic Sea herring

Ogonowski, M.; Wenman, V.; Danielsson, S.; Gorokhova, E.

10.1101/363127 — pharmacology and toxicology — Posted on 2018-09-01

2532 Evolution of populations expanding on curved surfaces

Beller, D. A.; Alards, K. M. J.; Tesser, F.; Mosna, R. A.; Toschi, F.; Möbius, W.

10.1101/406280 — evolutionary biology — Posted on 2018-09-01

2533 Re-Evaluating One-step Generation of Mice Carrying Conditional Alleles by CRISPR-Cas9-Mediated Genome Editing Technology

Gurumurthy, C.; Quadros, R.; Adams, J.; Alcaide, P.; Ayabe, S.; Ballard, J.; Batra, S. K.; Beauchamp, M.-C.; Becker, K. A.; Bernas, G.; Brough, D.; Carrillo-Salinas, F.; Dawson, R.; DeMambro, V.; D'Hont, J.; Dibb, K.; Eudy, J. D.; Gan, L.; Gao, J.; Gonzales, A.; Guntur, A.; Guo, H.; Harms, D. W.; Harrington, A.; Hentges, K. E.; Humphreys, N.; Imai, S.; Ishii, H.; Iwama, M.; Jonasch, E.; Karolak, M.; Keavney, B.; Khin, N.-C.; Konno, M.; Kotani, Y.; Kunihiro, Y.; Lakshmanan, I.; Larochelle, C.; Lawrence, C. B.; Li, L.; Lindner, V.; Liu, X.-D.; Lopez-Castejon, G.; Loudon, A.; Lowe, J.; Jerome-Ma

10.1101/393231 — genetics — Posted on 2018-09-01

2534 A parameter-efficient deep learning approach to predict conversion from mild cognitive impairment to Alzheimer’s disease

Spasov, S.; Passamonti, L.; Duggento, A.; Lio, P.; Toschi, N.

10.1101/383687 — bioinformatics — Posted on 2018-09-01

2535 Improvement of the memory function of a mutual repression network in a stochastic environment by negative autoregulation

Hasan, A. B. M. S. U.; Kurata, H.; Pechmann, S.

10.1101/279109 — systems biology — Posted on 2018-09-01

2536 The first set of universal nuclear protein-coding loci markers for avian phylogenetic and population genetic studies

Liu, Y.; Liu, S.; Yeh, C.-F.; Zhang, N.; Chen, G.; Que, P.; Dong, L.; Li, S.-H.

10.1101/272732 — evolutionary biology — Posted on 2018-09-01

2537 Capicua regulates neural stem cell proliferation and lineage specification through control of Ets factors

Ahmad, S. T.; Rogers, A. D.; Chen, M. J.; Dixit, R.; Adnani, L.; Frankiw, L.; Lawn, S. O.; Blough, M. D.; Alshehri, M.; Wu, W.; Robbins, S. M.; Cairncross, G.; Schuurmans, C.; Chan, J.

10.1101/335984 — cancer biology — Posted on 2018-09-01

2538 Population genomic structure and genome-wide linkage disequilibrium in farmed Atlantic salmon (Salmo salar L.) using dense SNP genotypes

Barria, A.; Lopez, M. E.; Yoshida, G.; Cavalheiro, R.; Yanez, J. M.

10.1101/406405 — genomics — Posted on 2018-09-01

2539 Polyploid plants have faster rates of multivariate climatic niche evolution than their diploid relatives

Baniaga, A. E.; Marx, H. E.; Arrigo, N.; Barker, M. S.

10.1101/406314 — evolutionary biology — Posted on 2018-09-01

2540 In silico prediction of high-resolution Hi-C interaction matrices

Zhang, S.; Chasman, D.; Knaack, S.; Roy, S.

10.1101/406322 — bioinformatics — Posted on 2018-09-01

2541 Evolution of populations expanding on curved surfaces

Beller, D. A.; Alards, K. M. J.; Tesser, F.; Mosna, R. A.; Toschi, F.; Möbius, W.

10.1101/406280 — evolutionary biology — Posted on 2018-09-01

2542 Simulations suggest a constrictive force is required for Gram-negative bacterial cell division

Nguyen, L. T.; Oikonomou, C. M.; Ding, H. J.; Kaplan, M.; Yao, Q.; Chang, Y.-W.; Beeby, M.; Jensen, G. J.

10.1101/406389 — biophysics — Posted on 2018-09-01

2543 Developmental heterogeneity of microglia and brain myeloid cells revealed by deep single-cell RNA sequencing

Li, Q.; Cheng, Z.; Zhou, L.; Darmanis, S.; Neff, N.; Okamoto, J.; Gulati, G.; Bennett, M. L.; Sun, L. O.; Clarke, L. E.; Marschallinger, J.; Yu, G.; Quake, S. R.; Wyss-Coray, T.; Barres, B. A.

10.1101/406363 — neuroscience — Posted on 2018-09-01

2544 Organization of state transitions in the resting-state human cerebral cortex

Kang, J.; Pae, C.; Park, H.-J.

10.1101/404418 — neuroscience — Posted on 2018-09-01

Archive, 2018-09