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Archive, 2019-07

2 DNA Punch Cards: Encoding Data on Native DNA Sequences via Nicking
Tabatabaei, S. K.; Wang, B.; Athreya, N. B. M.; Enghiad, B.; Hernandez, A. G.; Leburton, J.-P.; Soloveichik, D.; Zhao, H.; Milenkovic, O.
10.1101/672394 — synthetic biology — Posted on 2019-07-31
4 A putative ER-PM contact site complex relocalizes in response to Rare Earth Elements-induced endocytosis
Lee, E.; Vila Nova Santana, B.; Samuels, E.; Benitez Fuente, F.; Corsi, E.; Botella, M. A.; Perez Sancho, J.; Vanneste, S.; Friml, J.; Macho, A.; Alves Azevedo, A.; Rosado, A.
10.1101/720466 — plant biology — Posted on 2019-07-31
5 Medicago truncatula possesses a single Shaker outward K+ channel: functional characterization and roles in planta
Drain, A.; Thouin, J.; Wang, L.; Pauly, N.; Nieves-Cordones, M.; Boeglin, M.; Gaillard, I.; Very, A.-A.; Sentenac, H.
10.1101/720367 — plant biology — Posted on 2019-07-31
8 The MADS-box transcription factor PHERES1 controls imprinting in the endosperm by binding to domesticated transposons
A. Batista, R.; Moreno-Romero, J.; Qiu, Y.; van Boven, J.; Santos-Gonzalez, J.; D. Figueiredo, D.; Kohler, C.
10.1101/616698 — plant biology — Posted on 2019-07-31
9 Autophagy Mitigates High-Temperature Injury in Pollen Development of Arabidopsis thaliana
Dundar, G.; Shao, Z.; Higashitani, N.; Kikuta, M.; Izumi, M.; Higashitani, A.
10.1101/088526 — plant biology — Posted on 2019-07-31
11 Interaction between induced and natural variation at oil yellow1 delays flowering in maize
Khangura, R. S.; Venkata, B.; Marla, S.; Mickelbart, M.; Dhungana, S.; Braun, D.; Dilkes, B.; Johal, G.
10.1101/706846 — plant biology — Posted on 2019-07-31
12 Field evaluation of a quantitative, and rapid malaria diagnostic system using a fluorescent Blue-ray optical device
Mita, T.; Yamamoto, T.; Hashimoto, M.; Nagatomi, K.; Nogami, T.; Sofue, Y.; Hayashi, T.; Ido, Y.; Yatsushiro, S.; Abe, K.; Kajimoto, K.; Tamari, N.; Awuor, B.; Sonye, G.; Kongere, J.; Munga, S.; Ohashi, J.; Oka, H.; Minakawa, N.; Kataoka, M.
10.1101/721076 — physiology — Posted on 2019-07-31
13 Skeletal Muscle mTORC1 Activation Increases Energy Expenditure and Reduces Longevity in Mice
Stephenson, E. J.; Redd, J. R.; Snyder, D.; Tran, Q. T.; Lu, B.; Peloquin, M. J.; Mulcahy, M. C.; Harvey, I.; Fisher, K.; Han, J. C.; Qi, N.; Saltiel, A. R.; Bridges, D.
10.1101/720540 — physiology — Posted on 2019-07-31
18 Multi-Domain Potential Biomarkers for Post Traumatic Stress Disorder (PTSD) Severity in Recent Trauma Survivors
Ben-Zion, Z.; Zeevi, Y.; Keynan, N. J.; Admon, R.; Sharon, H.; Halpern, P.; Liberzon, I.; Shalev, A.; Benjamini, Y.; Hendler, T.
10.1101/721068 — neuroscience — Posted on 2019-07-31
19 The Insulin Receptor In Astrocytes Is Involved In The Entrance Of Circulating Insulin Into The Brain
Fernandez, A. M.; Davila, J. C.; Garcia-Caceres, C.; Tschop, M.; Gutierrez, M. A.; Torres Aleman, I.
10.1101/720813 — neuroscience — Posted on 2019-07-31
20 Human inference in changing environments
Prat-Carrabin, A.; Wilson, R. C.; Cohen, J. D.; Azeredo da Silveira, R.
10.1101/720516 — neuroscience — Posted on 2019-07-31
22 Complement-dependent synapse loss and microgliosis in a mouse model of multiple sclerosis
Hammond, J. W.; Bellizzi, M. J.; Ware, C.; Qiu, W. Q.; Li, H.; Luo, S.; Li, Y.; Gelbard, H.
10.1101/720649 — neuroscience — Posted on 2019-07-31
25 Decreased viability and neurite length in neural cells treated with chitosan-dextran sulfate nanocomplexes
Zamproni, L. N.; Teixeira, D.; Alliegro, A. A.; Maugeri, I. L.; des Rieux, A.; Porcionatto, M.
10.1101/616144 — neuroscience — Posted on 2019-07-31
26 Serotonin and childhood maltreatment interact to shape brain architecture and anxious avoidant behavior, a TPH2 imaging genetics approach
Liu, C.; Xu, L.; Li, J.; Zhou, F.; Yang, X.; Zheng, X.; Fu, M.; Li, K.; Sindermann, C.; Montag, C.; Ma, Y.; Scheele, D.; Ebstein, R. P.; Kendrick, K. M.; Becker, B.
10.1101/685099 — neuroscience — Posted on 2019-07-31
28 Structured event memory: a neuro-symbolic model of event cognition
Franklin, N.; Norman, K. A.; Ranganath, C.; Zacks, J. M.; Gershman, S. J.
10.1101/541607 — neuroscience — Posted on 2019-07-31
29 Comparative transcriptomic and epigenomic analysis identifies key regulators of injury response and neurogenic competence in retinal glia
Hoang, T.; Wang, J.; Boyd, P.; Wang, F.; Santiago, C.; Jiang, L.; Lahne, M.; Todd, L.; Saez, C.; Yoo, S.; Keuthan, C.; Palazzo, I.; Squires, N.; Campbell, W.; Jia, M.; Rajaii, F.; Parayil, T.; Wang, G.; Ash, J.; Fischer, A.; Hyde, D.; Qian, J.; Blackshaw, S.
10.1101/717876 — neuroscience — Posted on 2019-07-31
30 Versatile and robust genome editing with Streptococcus thermophilus CRISPR1-Cas9
Agudelo, D.; Carter, S.; Velimirovic, M.; Duringer, A.; Levesque, S.; Rivest, J.-F.; Loehr, J.; Mouchiroud, M.; Cyr, D.; Waters, P. J.; Laplante, M.; Moineau, S.; Goulet, A.; Doyon, Y.
10.1101/321208 — molecular biology — Posted on 2019-07-31
31 A comparison of pedigree, genetic, and genomic estimates of relatedness for informing pairing decisions in two critically endangered birds.
Galla, S. J.; Moraga, R.; Brown, L.; Cleland, S.; Hoeppner, M.; Maloney, R. F.; Richardson, A.; Slater, L.; Santure, A. W.; Steeves, T. E.
10.1101/721118 — molecular biology — Posted on 2019-07-31
34 Allicin regulates energy homeostasis through brown adipose tissue
Zhang, C.; He, X.; Sheng, Y.; Xu, J.; Yang, C.; Zheng, S.; Liu, J.; Li, H.; Yang, M.; Xu, W.; Luo, Y.; Huang, K.
10.1101/713305 — molecular biology — Posted on 2019-07-31
35 Effects of the copper IUD on composition of the vaginal microbiota in the olive baboon
Eastman, A. J.; Sack, D.; Chai, D.; Bassis, C. M.; Carter, K. A.; Young, V. B.; Bergin, I. L.; Bell, J. D.
10.1101/720185 — microbiology — Posted on 2019-07-31
36 Microbial community dynamics of surface water in British Columbia, Canada
Uyaguari, M.; Croxen, M.; Cronin, K.; Luo, Z.; Isaac-Renton, J.; Prystajecky, N.; Tang, P.
10.1101/719146 — microbiology — Posted on 2019-07-31
37 Deep microbial community profiling along the fermentation process of pulque, a major biocultural resource of Mexico.
Rocha-Arriaga, C.; Espinal-Centeno, A.; Martinez-Sanchez, S.; Caballero-Perez, J.; Alcaraz, L. D.; Cruz-Ramirez, A.
10.1101/718999 — microbiology — Posted on 2019-07-31
39 Biosurfactant production maintains viability in anoxic conditions by depolarizing the membrane in Bacillus subtilis
Arjes, H. A.; Vo, L.; Dunn, C. M.; Willis, L.; DeRosa, C. A.; Fraser, C. L.; Kearns, D. B.; Huang, K.
10.1101/720532 — microbiology — Posted on 2019-07-31
40 Perinatal Inflammation Influences but Does Not Arrest Rapid Immune Development in Preterm Babies
Kamdar, S.; Hutchinson, R.; Laing, A.; Stacey, F.; Ansbro, K.; Millar, M. R.; Costeloe, K.; Wade, W. G.; Fleming, P.; Gibbons, D.
10.1101/720888 — immunology — Posted on 2019-07-31
41 Activation of the liver X receptors alters CD4+ T cell membrane lipids and signalling through direct regulation of glycosphingolipid synthesis
Waddington, K. E.; Robinson, G. A.; Adriani, M.; Rubio Cuesta, B.; Chrifi-Alaoui, E.; Andreone, S.; Poon, K. S.; Ivanova, I.; Martin-Gutierrez, L.; Owen, D.; Nytrova, P.; Kubala Havrdova, E.; Farrell, R.; Jury, E. E.; Pineda-Torra, I.
10.1101/721050 — immunology — Posted on 2019-07-31
42 Age-related changes to macrophages are detrimental to fracture healing
Clark, D.; Brazina, S.; Yang, F.; Hu, D.; Niemi, E.; Miclau, T.; Nakamura, M.; Marcucio, R.
10.1101/720128 — immunology — Posted on 2019-07-31
43 Aging-related inflammation driven by cellular senescence enhances NAD consumption via activation of CD38+ macrophages
Covarrubias, A. J.; Kale, A.; Perrone, R.; Lopez-Dominguez, J. A.; Oliveira Pisco, A.; Kasler, H. G.; Schmidt, M. S.; Wiley, C. D.; Iyer, S. S.; Basisty, N.; Wu, Q.; Kwok, R.; Heckenbach, I.; Shin, K.-O.; Lee, Y.-M.; Ben-Sahra, I.; Ott, M.; Schilling, B.; Ishihara, K.; Quake, S. R.; Newman, J.; Brenner, C.; Campisi, J.; Verdin, E.
10.1101/609438 — immunology — Posted on 2019-07-31
44 High-throughput identification of MHC class I binding peptides using an ultradense peptide array
Haj, A. K.; Breitbach, M. E.; Baker, D. A.; Mohns, M. S.; Moreno, G. K.; Wilson, N. A.; Lyamichev, V.; Patel, J.; Weisgrau, K. L.; Dudley, D. M.; O'Connor, D. H.
10.1101/715342 — immunology — Posted on 2019-07-31
45 A high-throughput segregation analysis identifies the sex chromosomes of Cannabis sativa
Prentout, D.; Razumova, O.; Rhone, B.; Badouin, H.; Henri, H.; Feng, C.; Kafer, J.; Karlov, G.; Marais, G. A.
10.1101/721324 — genomics — Posted on 2019-07-31
47 Spatially resolved transcriptomics reveals plant host responses to pathogens
Clark, M. D.; Giolai, M.; Verweij, W.; Lister, A.; Heavens, D.; Macaulay, I.
10.1101/720086 — genomics — Posted on 2019-07-31
48 Causal SNP regulating FAM13B expression identified for the Chr. 5q31 atrial fibrillation susceptibility loc
Tchou, G.; Gore-Panter, S.; Hsu, J.; Liu, F.; LIU, N.; Moravec, C. S.; Barnard, J.; Van Wagoner, D. R.; Chung, M. K.; Smith, J. D.
10.1101/719914 — genomics — Posted on 2019-07-31
51 EZH2 inhibition results in genome-wide PRC2 redistribution
Yuan, C.-C.; Jeon, A.-J.; Tucker-Kellogg, G.; Bryant, B.; Trojer, P.
10.1101/713842 — genomics — Posted on 2019-07-31
52 The genome of Peronospora belbahrii reveals high heterozygosity, a low number of canonical effectors and CT-rich promoters
Thines, M.; Sharma, R.; Rodenburg, S.; Gogleva, A.; Judelson, H.; Xia, X.; van den Hoogen, J.; Kitner, M.; Klein, J.; Neilen, M.; de Ridder, D.; Seidl, M.; van den Ackerveken, G.; Govers, F.; Schornack, S.; Studholme, D.
10.1101/721027 — genomics — Posted on 2019-07-31
53 Identifying microbial species by single-molecule DNA optical mapping and resampling statistics
Bouwens, A.; Deen, J.; Vitale, R.; D'Huys, L.; Goyvaerts, V.; Descloux, A.; Borrenberghs, D.; Grussmayer, K.; Lukes, T.; Camacho, R.; Su, J.; Ruckebusch, C.; Lasser, T.; Van De Ville, D.; Hofkens, J.; Radenovic, A.; Janssen, K. P. F.
10.1101/609412 — genomics — Posted on 2019-07-31
55 Bifidobacterium is enriched in gut microbiome of Kashmiri women with polycystic ovary syndrome
Hassan, S.; Kaakinen, M. A.; Draisma, H.; Ganie, M. A.; Rashid, A.; Balkhiyarova, Z.; Kiran, G. S.; Vogazianos, P.; Shammas, C.; Selvin, J.; Antoniades, A.; Demirkan, A.; Prokopenko, I.
10.1101/718510 — genomics — Posted on 2019-07-31
57 Delineation of the First Human Mendelian Disorder of the DNA Demethylation Machinery: TET3 Deficiency
Beck, D. B.; Petracovici, A.; He, C.; Moore, H. W.; Louie, R. J.; Ansar, M.; Douzgou, S.; Sithambaram, S.; Cottrell, T.; Santos-Cortez, R. L. P.; Prijoles, E. J.; Bend, R.; Keren, B.; Mignot, C.; Nougues, M.-C.; Ounap, K.; Reimand, T.; Pajusalu, S.; Zahid, M.; Saqib, M. A. N.; Buratti, J.; Seaby, E. G.; McWalter, K.; Telegrafi, A.; Baldridge, D.; Shinawi, M.; Leal, S. M.; Schaefer, G. B.; Stevenson, R. E.; Banka, S.; Bonasio, R.; Fahrner, J. A.
10.1101/719047 — genetics — Posted on 2019-07-31
58 Genetic control of tracheid properties in Norway spruce wood
Baison, J.; Zhou, L.; Forsberg, N.; Morling, T.; Grahn, T.; Olsson, L.; Karlsson, B.; Wu, H.; Mellerowicz, E.; Lundqvist, S.-O.; Garcia Gill, R.
10.1101/720904 — genetics — Posted on 2019-07-31
59 Noninvasive Prenatal Diagnosis for Duchenne Muscular Dystrophy Based on the Direct Haplotype Phasing
Chen, M.; Chen, C.; Huang, X.; Sun, J.; Jiang, L.; Li, Y.; Zhu, Y.; Tian, C.; Li, Y.; Lu, Z.; Wang, Y.; Zeng, F.; Yang, Y.; Peng, Z.; Yin, C.; Chen, D.
10.1101/720987 — genetics — Posted on 2019-07-31
60 The paternal and maternal genetic history of Vietnamese populations
Macholdt, E.; Arias, L.; Nguyen, T. D.; Nguyen, D. T.; Nguyen, V. P.; Schroeder, R.; Pakendorf, B.; Nong, V. H.; Stoneking, M.
10.1101/719831 — genetics — Posted on 2019-07-31
61 Extensive intraspecies cryptic variation in an ancient embryonic gene regulatory network
Torres Cleuren, Y. N.; Ewe, C. K.; Chipman, K. C.; Mears, E.; Wood, C. G.; Al-Alami, C.; Alcorn, M.; Turner, T. L.; Joshi, P.; Snell, R. G.; Rothman, J.
10.1101/628495 — genetics — Posted on 2019-07-31
64 The wild species genome ancestry of domestic chickens
Lawal, R. A.; Martin, S. H.; Vanmechelen, K.; Vereijken, A.; Silva, P.; Al-Atiyat, R. M.; Aljumaah, R. S.; Mwacharo, J. M.; Wu, D.-D.; Zhang, Y.-P.; Hocking, P. M.; Smith, J.; Wragg, D.; Hanotte, O.
10.1101/711366 — evolutionary biology — Posted on 2019-07-31
68 The two-step chemosensory system underlying the oligophagy of silkworm larvae
Tsuneto, K.; Endo, H.; Shii, F.; Sasaki, K.; Nagata, S.; Sato, R.
10.1101/719344 — ecology — Posted on 2019-07-31
69 Mesenchymal Igf2 is a major paracrine regulator of pancreatic growth and function
Hammerle, C. M.; Sandovici, I.; Brierley, G. V.; Smith, N. M.; Zimmer, W. E.; Zvetkova, I.; Prosser, H. M.; Sekita, Y.; Lam, B. Y. H.; Ma, M.; Cooper, W. N.; Vidal-Puig, A.; Ozanne, S. E.; Medina-Gomez, G.; Constancia, M.
10.1101/714121 — developmental biology — Posted on 2019-07-31
72 A scalable culturing system for the marine annelid Platynereis dumerilii.
Kuehn, E.; Stockinger, A. W.; Girard, J.; Raible, F.; Özpolat, B. D.
10.1101/714238 — developmental biology — Posted on 2019-07-31
73 Precision of Tissue Patterning is Controlled by Dynamical Properties of Gene Regulatory Networks
Exelby, K.; Herrera-Delgado, E.; Garcia Perez, L.; Perez-Carrasco, R.; Sagner, A.; Metzis, V.; Sollich, P.; Briscoe, J.
10.1101/721043 — developmental biology — Posted on 2019-07-31
74 An ER CREC family protein regulates the egress proteolytic cascade in malaria parasites
Fierro, M. A.; Asady, B.; Brooks, C. F.; Villegas, A.; Moreno, S. N. J.; Muralidharan, V.
10.1101/457481 — cell biology — Posted on 2019-07-31
76 LUZP1, a novel regulator of primary cilia and the actin cytoskeleton, is altered in Townes-Brocks Syndrome
Bozal-Basterra, L.; Gonzalez-Santamarta, M.; Bermejo-Arteagabeitia, A.; Da Fonseca, C.; Pampliega, O.; Andrade, R.; Martin-Martin, N.; Branon, T. C.; Ting, A. Y.; Carracedo, A.; Rodriguez, J. A.; Elortza, F.; Sutherland, J. D.; Barrio, R.
10.1101/721316 — cell biology — Posted on 2019-07-31
77 Vital role for Plasmodium berghei Kinesin8B in axoneme assembly during male gamete formation and mosquito transmission
Depoix, D.; Marques, S. R.; Ferguson, D. J. P.; Chaouch, S.; Duguet, T.; Sinden, R. E.; Grellier, P.; Kohl, L.
10.1101/664375 — cell biology — Posted on 2019-07-31
78 A live-cell screen for altered Erk dynamics reveals principles of proliferative control
Goglia, A. G.; Wilson, M. Z.; Silbert, J.; Basta, L. P.; Jena, S.; Devenport, D.; Toettcher, J. E.
10.1101/675736 — cell biology — Posted on 2019-07-31
80 A dual function of TMEM70 in OXPHOS: assembly of complexes I and V
Sanchez-Caballero, L.; Elurbe, D. M.; Baertling, F.; Guerrero-Castillo, S.; van den Brand, M.; van Strien, J.; van Dam, T. J. P.; Rodenburg, R.; Brandt, U.; Huynen, M. A.; Nijtmans, L. G. J.
10.1101/697185 — cell biology — Posted on 2019-07-31
81 GRP78 promotes stemness in normal and neoplastic cells
Conner, C.; Lager, T. W.; Guldner, I. H.; Wu, M.-Z.; Hishida, Y.; Hishida, T.; Ruiz, S.; Yamasaki, A. E.; Gilson, R. C.; Izpisua Belmonte, J. C.; Gray, P. C.; Kelber, J. A.; Zhang, S.; Panopoulos, A. D.
10.1101/720698 — cancer biology — Posted on 2019-07-31
82 Extracting Biological Insights from the Project Achilles Genome-Scale CRISPR Screens in Cancer Cell Lines
Dempster, J. M.; Rossen, J.; Kazachkova, M.; Pan, J.; Kugener, G.; Root, D. E.; Tsherniak, A.
10.1101/720243 — cancer biology — Posted on 2019-07-31
84 Evaluation of Upconverting nanoparticles towards heart theranostics
Kermorgant, M.; Ben Salem, J.; Santelli, J.; Calise, D.; Oster, A.-C.; Lairez, O.; Coudret, C.; Verelst, M.; Gales, C.; Senard, J.-M.; Beaudry, F.; Pavy-Le Traon, A.; Roux, C.; Mauricot, R.; Arvanitis, D. N.
10.1101/721035 — biophysics — Posted on 2019-07-31
85 A new twist on bacterial motility - Two distinct type IV pili revealed by cryoEM
Neuhaus, A.; Selvaraj, M.; Salzer, R.; Langer, J.; Kruse, K.; Sanders, K.; Daum, B.; Averhoff, B.; Gold, V.
10.1101/720938 — biophysics — Posted on 2019-07-31
86 Vimentin provides the mechanical resilience required for amoeboid migration and protection of the nucleus.
Da Cunha Stankevicins, L.; Urbanska, M.; Flormann, D. A.; Terriac, E.; Mostajeran, Z.; Gad, A. K. B.; Cheng, F.; Eriksson, J. E.; Lautenschlaeger, F.
10.1101/720946 — biophysics — Posted on 2019-07-31
93 Variational Autoencoders for Cancer Data Integration: Design Principles and Computational Practice
Simidjievski, N.; Bodnar, C.; Tariq, I.; Scherer, P.; Andres-Terre, H.; Shams, Z.; Jamnik, M.; Lio', P.
10.1101/719542 — bioinformatics — Posted on 2019-07-31
94 Theranostic cranial implant for hyperspectral light delivery and microcirculation imaging without scalp removal
Davoodzadeh, N.; Cano-Velazquez, M. S.; Jonak, C. R.; Halaney, D. L.; Binder, D. K.; Hernandez-Cordero, J. A.; Aguilar, G.
10.1101/720599 — bioengineering — Posted on 2019-07-31
95 Anti-inflammatory Role of Curcumin in LPS Treated A549 cells at Global Proteome level and on Mycobacterial infection.
Singh, S.; Arya, R.; Bargaje, R. R.; Das, M. K.; Akram, S.; Faruquee, H. M.; Behera, R. K.; Nanda, R.; Agrawal, A.
10.1101/721100 — biochemistry — Posted on 2019-07-31
97 The Acute Myeloid Leukemia variant DNMT3A Arg882His is a DNMT3B-like enzyme
Norvil, A. B.; AlAbdi, L.; Liu, B.; Forstoffer, N. E.; Michie, A. R.; Chen, T.; Gowher, H.
10.1101/720557 — biochemistry — Posted on 2019-07-31
98 The structure of a calsequestrin filament reveals mechanisms of familial arrhythmia
Titus, E.; Deiter, F.; Shi, C.; Wojciak, J.; Scheinman, M.; Jura, N.; Deo, R.
10.1101/672303 — biochemistry — Posted on 2019-07-31
99 CENP-C unwraps the CENP-A nucleosome through the H2A C-terminal tail
Ali-Ahmad, A.; Bilokapic, S.; Schafer, I. B.; Halic, M.; Sekulic, N.
10.1101/705699 — biochemistry — Posted on 2019-07-31
104 The Habenular Receptor GPR151 Regulates Addiction Vulnerability Across Drug Classes
Antolin-Fontes, B.; Li, K.; Ables, J. L.; Riad, M. H.; Gorlich, A.; Williams, M.; Wang, C.; Lipford, S. M.; Dao, M.; Molina, H.; Liu, J.; Kenny, P. J.; Ibanez-Tallon, I.
10.1101/720508 — neuroscience — Posted on 2019-07-31
106 Reproducibility of the correlative triad among aging, dopamine D2-like receptor availability, and cognition
Juarez, E. J.; Castrellon, J. J.; Green, M. A.; Crawford, J. L.; Seaman, K. L.; Smith, C. T.; Dang, L. C.; Matuskey, D.; Morris, E. D.; Cowan, R. L.; Zald, D. H.; Samanez-Larkin, G. R.
10.1101/494765 — neuroscience — Posted on 2019-07-31
107 Liquid biopsies for omics-based analysis in sentinel mussels.
Caza, F.; Granger Joly de Boissel, P.; Villemur, R.; Betoulle, S.; St-Pierre, Y.
10.1101/720219 — ecology — Posted on 2019-07-31
108 TALE and NF-Y co-occupancy marks enhancers of developmental control genes during zygotic genome activation in zebrafish
Stanney, W.; Ladam, F.; Donaldson, I. J.; Parsons, T. J.; Maehr, R.; Bobola, N.; Sagerstrom, C. G.
10.1101/720102 — developmental biology — Posted on 2019-07-31
111 Unraveling the effects of spatial variability and relic DNA on the temporal dynamics of soil microbial communities
Carini, P.; Delgado-Baquerizo, M.; Hinckley, E.-L.; Holland-Moritz, H.; Brewer, T. E.; Rue, G.; Vanderburgh, C.; McKnight, D.; Fierer, N.
10.1101/402438 — microbiology — Posted on 2019-07-31
113 Systems-level analysis of monocyte responses in inflammatory bowel disease identifies IL-10 and IL-1 cytokine networks that regulate IL-23
Aschenbrenner, D.; Quaranta, M.; Banerjee, S.; Ilott, N.; Jansen, J.; Steere, B. A.; Chen, Y.-H.; Ho, S.; Cox, K.; Oxford IBD Cohort Investigators, ; Arancibia-Carcamo, C. V.; Coles, M.; Gaffney, E.; Travis, S.; Denson, L. A.; Kugathasan, S.; Schmitz, J.; Powrie, F.; Sansom, S.; Uhlig, H. H.
10.1101/719492 — immunology — Posted on 2019-07-31
115 Network-based functional prediction augments genetic association to predict candidate genes for histamine hypersensitivity in mice
Mahoney, J. M.; Teuscher, C.; Tyler, A. L.; Krementsov, D. N.; Raza, A.; Ma, R. Z.; Huang, R.; Case, L.; Blankenhorn, E.
10.1101/719591 — genetics — Posted on 2019-07-31
118 ProGeo-neo: a Customized Proteogenomic Workflow for Neoantigen Prediction and Selection
Li, Y.; Wang, G.; Tan, X.; Ouyang, J.; Zhang, M.; Song, X.; Liu, Q.; Leng, Q.; Chen, L.; Xie, L.
10.1101/719351 — bioinformatics — Posted on 2019-07-31
121 The polyQ expansion modulates the configuration and phosphorylation of huntingtin
Jung, T.-Y.; Shin, B.; Tamo, G.; Kim, H.; Vijayvargia, R.; Leitner, A.; Marcaida, M. J.; Astorga-Wells, J.; Jung, R.; Aebersold, R.; Dal Peraro, M.; Hebert, H.; Seong, I. S.; Song, J.-J.
10.1101/721191 — neuroscience — Posted on 2019-07-31
122 Cortical tracking of speech reveals top-down reconstructive processes
Mukherjee, S.; Tomassini, A.; Badino, L.; Pastore, A.; Fadiga, L.; D'Ausilio, A.
10.1101/536946 — neuroscience — Posted on 2019-07-31
123 Novel mechanisms for phosphate acquisition in abundant rhizosphere-dwelling Bacteroidetes
Lidbury, I. D. E. A.; Scanlan, D.; Murphy, A.; Bottrill, A.; Jones, A.; Tibbett, M.; Bending, G.; Hammond, J.; Wellington, E.
10.1101/719427 — microbiology — Posted on 2019-07-31
124 Chromosome-level genome assembly of a butterflyfish, Chelmon rostratus
Huang, X.; Song, Y.; Zhang, S.; A, Y.; Zhang, M.; Chang, Y.; Zhang, H.; Li, C.; Zhao, Y.; Liu, M.; Seim, I.; Fan, G.; Liu, X.; Liu, S.
10.1101/719187 — genomics — Posted on 2019-07-31
125 Short-term oxaliplatin exposure according to established hyperthermic intraperitoneal chemotherapy (HIPEC) protocols lacks effectiveness in vitro and ex vivo
Löffler, M. W.; Seyfried, N.; Burkard, M.; Oswald, B.; Tolios, A.; Yurttas, C.; Herster, F.; Kauer, J.; Jäger, T.; Thiel, K.; Haen, S. P.; Rammensee, H.-G.; Venturelli, S.; Schwab, M.; Königsrainer, A.; Beckert, S.
10.1101/709055 — pharmacology and toxicology — Posted on 2019-07-31
128 Modulating the unfolded protein response: Impacts of radiation on the response of prostate cancer cells to ONC201
Amoroso, F.; Glass, K.; Liberal, F.; Steele, R.; Maguire, S.; Tarapore, R.; Allen, J.; Van Schaeybroeck, S.; Butterworth, K.; Prise, K.; O'Sullivan, J.; Jain, S.; Waugh, D.; Mills, I.
10.1101/710400 — cancer biology — Posted on 2019-07-31
129 Effects of IgG and IgM autoantibodies on non-infected erythrocytes is related to ABO blood group in Plasmodium vivax malaria and is associated with anemia
Mourao, L. C.; Medeiros, C. M. P.; Cardoso-Oliveira, G.; Roma, P. M. d. S.; Aboobacar, J. d. S. S.; Rodrigues, B. C. M.; Agero, U.; Fontes, C. J. F.; Braga, E. M.
10.1101/715110 — immunology — Posted on 2019-07-31
130 Musical expertise generalizes to superior temporal scaling in a Morse code tapping task
Slayton, M.; Romero-Sosa, J. L.; Shore, K.; Buonomano, D. V.; Viskontas, I. V.
10.1101/719716 — neuroscience — Posted on 2019-07-31
131 Taking the next-gen step: comprehensive antimicrobial resistance detection from Burkholderia pseudomallei genomes
Madden, D. E.; Webb, J. R.; Steinig, E. J.; Mayo, M.; Currie, B. J.; Price, E. P.; Sarovich, D. S.
10.1101/720607 — genomics — Posted on 2019-07-31
132 Microbial degradation of plastic in aqueous solutions demonstrated by CO2 evolution and quantification.
Rose, R. S.; Richardson, K. H.; Latvanen, E. J.; Hanson, C. A.; Sanders, I. A.
10.1101/719476 — ecology — Posted on 2019-07-31
133 PIWIL3 forms a complex with TDRKH in mammalian oocytes
Tan, M.; van Tol, L. H.; Rosenkranz, D.; Roovers, E. F.; Damen, M. J.; Stout, T. A.; Wu, W.; Roelen, B. A.
10.1101/719963 — cell biology — Posted on 2019-07-31
135 Genetic factors underlie the association between anxiety, attitudes and performance in mathematics
Malanchini, M.; Rimfeld, K.; Wang, Z.; Petrill, S. A.; Tucker-Drob, E. M.; Plomin, R.; Kovas, Y.
10.1101/719393 — genetics — Posted on 2019-07-31
141 Downscaling livestock census data using multivariate predictive models: sensitivity to modifiable areal unit problem
Da Re, D.; Gilbert, M.; Chaiban, C.; BourguignonBou, P.; Thanapongtharm, W.; Robinson, T. P.
10.1101/721159 — ecology — Posted on 2019-07-31
143 Quantitative Cellular-Resolution Map of the Oxytocin Receptor in Postnatally Developing Mouse Brains
Newmaster, K. T.; Nolan, Z. T.; Chon, U.; Vanselow, D. J.; Weit, A. R.; Tabbaa, M.; Hidema, S.; Nishimori, K.; Hammock, E. A.; Kim, Y.
10.1101/719229 — neuroscience — Posted on 2019-07-31
144 Ribosolve: Rapid determination of three-dimensional RNA-only structures
Kappel, K.; Zhang, K.; Su, Z.; Kladwang, W.; Li, S.; Pintilie, G.; Topkar, V. V.; Rangan, R.; Zheludev, I. N.; Watkins, A. M.; Yesselman, J. D.; Chiu, W.; Das, R.
10.1101/717801 — biophysics — Posted on 2019-07-31
145 Reversal of ageing- and injury-induced vision loss by Tet-dependent epigenetic reprogramming
Lu, Y.; Krishnan, A.; Brommer, B.; Tian, X.; Meer, M.; Vera, D. L.; Wang, C.; Zeng, Q.; Yu, D.; Bonkowski, M. S.; Yang, J.-H.; Hoffmann, E. M.; Zhou, S.; Korobkina, E.; Davidsohn, N.; Schultz, M. B.; Chwalek, K.; Rajman, L. A.; Church, G. M.; Hochedlinger, K.; Gladyshev, V. N.; Horvath, S.; Gregory-Ksander, M. S.; Ksander, B. R.; He, Z.; Sinclair, D. A.
10.1101/710210 — molecular biology — Posted on 2019-07-31
148 Faster 3D saturation-recovery based myocardial T1 mapping using a reduced number of saturation points and denoising
Nordio, G.; Bustin, A.; Odille, F.; Schneider, T.; Henningsson, M.; Prieto, C.; Botnar, R. M.
10.1101/721167 — bioengineering — Posted on 2019-07-31
149 cis dominantly explains regulatory divergence between two indica rice genotypes; drought further enhances regulatory differences
Ereful, N. C.; Liu, L.-y.; Kao, S.-M.; Tsai, E.; Laurena, A.; Thomson, M.; Greenland, A.; Powell, W.; Mackay, I.; Leung, H.
10.1101/714907 — plant biology — Posted on 2019-07-30
150 On the origins of a selective vulnerability to opioid addiction.
Levis, S. C.; Bentzley, B. S.; Molet, J.; Bolton, J. L.; Perrone, C. R.; Baram, T. Z.; Mahler, S. V.
10.1101/716522 — neuroscience — Posted on 2019-07-30
152 Phase variation in Mycobacterium tuberculosis glpK produces transiently heritable drug tolerance
Safi, H.; Gopal, P.; Lingaraju, S.; Ma, S.; Levine, C.; Dartois, V.; Yee, M.; Li, L.; Blanc, L.; Liang, H.-P. H.; Husain, S.; Hoque, M.; Soteropoulos, P.; Rustad, T.; Sherman, D.; Dick, T.; Alland, D.
10.1101/717272 — microbiology — Posted on 2019-07-30
155 Cooption and Specialization of Endothelin Signaling Pathways Drove Elaboration of the Neural Crest in Early Vertebrates
Square, T. A.; Jandzik, D.; Massey, J. L.; Romasek, M.; Stein, H. P.; Hansen, A. W.; Purkayastha, A.; Cattell, M. V.; Medeiros, D. M.
10.1101/710475 — developmental biology — Posted on 2019-07-30
160 The polyphagous plant pathogenic fungus Botrytis cinerea encompasses host-specialized and generalist populations
Mercier, A.; Carpentier, F.; Duplaix, C.; Auger, A.; Pradier, J.-M.; Viaud, M.; Gladieux, P.; Walker, A.-S.
10.1101/716985 — microbiology — Posted on 2019-07-30
161 Sand fly synthetic sex-aggregation pheromone co-located with insecticide reduces canine Leishmania infantum infection incidence: a stratified cluster randomised trial
Courtenay, O.; Dilger, E.; Calvo-Bado, L. A.; Kravar-Garde, L.; Carter, V.; Bell, M. J.; Alves, G. B.; Goncalves, R.; Makhdoomi, M. M.; Gonzalez, M. A.; Nunes, C. M.; Bray, D. P.; Brazil, R. P.; Hamilton, J. G.
10.1101/712174 — microbiology — Posted on 2019-07-30
162 Endocycling in the adult Drosophila accessory gland
Box, A. M.; Church, S. J.; Hayes, D.; Nandakumar, S.; Taichman, R. S.; Buttitta, L.
10.1101/719013 — developmental biology — Posted on 2019-07-30
163 Carotid intima-media thickness in UK Biobank: Identification of novel genome-wide loci, sex-specific effects and genetic correlations with obesity and glucometabolic traits.
Strawbridge, R. J.; Ward, J.; Bailey, M. E. S.; Cullen, B.; Ferguson, A.; Graham, N.; Johonston, K. J. A.; Lyall, L. M.; Pearsall, R.; Pell, J.; Shaw, R. J.; Tank, R.; Lyall, D. M.; Smith, D. J.
10.1101/718684 — genetics — Posted on 2019-07-30
164 Skewed distributions of LRS: beyond mean and variance
Tuljapurkar, S.; Zuo, W.; Coulson, T.; Horvitz, C.; Gaillard, J.-M.
10.1101/696500 — ecology — Posted on 2019-07-30
167 HD-tDCS over mIPS causally modulates online reach correction
Goettker, A.; Caie, B.; Jeyachandra, J.; Xu, S.; Gallivan, J.; Dmochowski, J.; Fiehler, K.; Blohm, G.
10.1101/708693 — neuroscience — Posted on 2019-07-30
168 Evolutionary persistence of DNA methylation for millions of years after ancient loss of a de novo methyltransferase
Catania, S.; Dumesic, P. A.; Pimentel, H.; Nasif, A.; Stoddard, C. I.; Burke, J. E.; Diedrich, J. K.; Cooke, S.; Shea, T.; Geinger, E.; Lintner, R.; Yates, J.; Hajkova, P.; Narlikar, G. J.; Cuomo, C.; Pritchard, J. K.; Madhani, H. D.
10.1101/149385 — molecular biology — Posted on 2019-07-30
169 Strong population structure in Venezuelan populations of Coccidioides posadasii
Teixeira, M. M.; Alvarado, P.; Roe, C.; Thompson, G.; Patane, J. S. L.; Sahl, J. W.; Keim, P.; Galgiani, J. N.; Litvintseva, A. P.; Matute, D. R.; Barker, B. M.
10.1101/719328 — evolutionary biology — Posted on 2019-07-30
172 Characterizing the Emergence of Liver and Gallbladder from the Embryonic Endoderm through Single-Cell RNA-Seq
Mu, T.; Xu, L.; Zhong, Y.; Liu, X.; Zhao, Z.; Huang, C.; Lan, X.; Lufei, C.; Zhou, Y.; Su, Y.; Xu, L.; Jiang, M.; Zhou, H.; Lin, X.; Wu, L.; Peng, S.; Liu, S.; Pedersen, S. B.; Dean, M.; Dunn, N. R.; Zaret, K. S.; Fu, X.-Y.; Hou, Y.
10.1101/718775 — developmental biology — Posted on 2019-07-30
175 Comparative transcriptomic and epigenomic analysis identifies key regulators of injury response and neurogenic competence in retinal glia
Hoang, T.; Wang, J.; Boyd, P.; Wang, F.; Santiago, C.; Jiang, L.; Lahne, M.; Todd, L.; Saez, C.; Yoo, S.; Keuthan, C.; Palazzo, I.; Squires, N.; Campbell, W.; Jia, M.; Rajaii, F.; Parayil, T.; Wang, G.; Ash, J.; Fischer, A.; Hyde, D.; Qian, J.; Blackshaw, S.
10.1101/717876 — neuroscience — Posted on 2019-07-30
180 Identifying microbial species by single-molecule DNA optical mapping and resampling statistics
Bouwens, A.; Deen, J.; Vitale, R.; D'Huys, L.; Goyvaerts, V.; Descloux, A.; Borrenberghs, D.; Grussmayer, K.; Lukes, T.; Camacho, R.; Su, J.; Ruckebusch, C.; Lasser, T.; Van De Ville, D.; Hofkens, J.; Radenovic, A.; Janssen, K. P. F.
10.1101/609412 — genomics — Posted on 2019-07-30
181 Chromosome-level genome assembly of a butterflyfish, Chelmon rostratus
Huang, X.; Song, Y.; Zhang, S.; A, Y.; Chang, Y.; Zhang, H.; Li, C.; Zhao, Y.; Liu, M.; Liu, X.; Fan, G.
10.1101/719187 — genomics — Posted on 2019-07-30
187 Incursion of killer sponge Terpios hoshinota on the coral reefs of Lakshadweep archipelago
Das, R. R.; CR, S.; Mohan, G.; KR, A.; Samuel, D.; Ramachandran, P.; Ramachandran, R.
10.1101/617662 — ecology — Posted on 2019-07-30
188 Role of a kinesin motor in cancer cell mechanics
Mandal, K.; Pogoda, K.; Nandi, S.; Mathieu, S.; Kasri, A.; Radvanyi, F.; Goud, B.; Janmey, P. A.; Manneville, J.-B.
10.1101/719054 — biophysics — Posted on 2019-07-30
191 Matrix-matched calibration curves for assessing analytical figures of merit in quantitative proteomics
Pino, L. K.; Searle, B. C.; Yang, H.-Y.; Hoofnagle, A. N.; Noble, W. S.; MacCoss, M. J.
10.1101/719179 — biochemistry — Posted on 2019-07-30
192 Neural and behavioral correlates of declarative memory are associated with temporal discounting in older adults
Lempert, K. M.; Mechanic-Hamilton, D. J.; Xie, L.; Wisse, L. E. M.; de Flores, R.; Wang, J.; Das, S. R.; Yushkevich, P. A.; Wolk, D. A.; Kable, J. W.
10.1101/720250 — neuroscience — Posted on 2019-07-30
197 Mitochondrial dysfunction impairs human neuronal development and reduces neuronal network activity and synchronicity
Klein Gunnewiek, T. M.; van Hugte, E. J. H.; Frega, M.; Guardia, G. S.; Foreman, K. B.; Panneman, D.; Mossink, B.; Linda, K.; Keller, J. M.; Schubert, D.; Cassiman, D.; Morava, E.; Rodenburg, R.; Perales-Clemente, E.; Nelson, T. J.; Nadif Kasri, N.; Kozicz, T.
10.1101/720227 — neuroscience — Posted on 2019-07-30
200 A genome-wide CRISPR screen identifies ZCCHC14 as a host factor required for hepatitis B surface antigen production
Hyrina, A.; Jones, C.; Chen, D.; Clarkson, S.; Cochran, N.; Feucht, P.; Hoffman, G.; Lindeman, A.; Russ, C.; Sigoillot, F.; Uehara, K.; Xie, L.; Ganem, D.; Holdorf, M.
10.1101/718940 — microbiology — Posted on 2019-07-30
201 A novel mosaic tetracycline resistance gene tet(S/M) detected in a multidrug-resistant pneumococcal CC230 lineage that underwent capsular switching in South Africa
Lo, S. W.; Gladstone, R. A.; van Tonder, A. J.; du Plessis, M.; Cornick, J. E.; Hawkins, P. A.; Madhi, S. A.; Nzenze, S. A.; Kandasamy, R.; Ravikumar, K.; Elmdaghri, N.; Kwambana-Adams, B.; Almeida, S. C. G.; Skoczynska, A.; Egorova, E.; Titov, L.; Saha, S. K.; Paragi, M.; Everett, D. B.; Antonio, M.; Klugman, K. P.; Li, Y.; Metcalf, B. J.; Beall, B.; McGee, L.; Breiman, R. F.; Bentley, S. D.; von Gottberg, A.
10.1101/718460 — microbiology — Posted on 2019-07-30
202 Inefficient ZAP70-Signaling Blunts Antigen Detection by CAR-T-Cells
Gudipati, V.; Rydzek, J.; Doel-Perez, I.; Scharf, L.; Königsberger, S.; Einsele, H.; Stockinger, H.; Hudecek, M.; Huppa, J. B.
10.1101/720417 — immunology — Posted on 2019-07-30
204 Differential lipid dynamics in stocked and wild juvenile lake trout
Sorrentino, M. G.; Stewart, T. R.; Marsden, J. E.; Stockwell, J. D.
10.1101/718692 — ecology — Posted on 2019-07-30
205 Loss of cell cycle control renders cells nonresponsive to local extrinsic differentiation cues
Cerveny, K.; Tower, I.; Lamb, D.; Van Duzer, A.; Bronstein, H.; Hagen, O.; Varga, M.
10.1101/720276 — developmental biology — Posted on 2019-07-30
207 Exfoliated near infrared fluorescent CaCuSi4O10 nanosheets with ultra-high photostability and brightness for biological imaging
Selvaggio, G.; Preiss, H.; Chizhik, A.; Nissler, R.; Mann, F.; Lv, Z.; Oswald, T.; Spreinat, A.; Erpenbeck, L.; Grosshans, J.; Giraldo, J. P.; Kruss, S.
10.1101/710384 — biophysics — Posted on 2019-07-30
208 Graphmap2 - splice-aware RNA-seq mapper for long reads
Maric, J.; Sovic, I.; Krizanovic, K.; Nagarajan, N.; Sikic, M.
10.1101/720458 — bioinformatics — Posted on 2019-07-30
213 Biosurfactant production maintains viability in anoxic conditions by depolarizing the membrane in Bacillus subtilis
Arjes, H. A.; Vo, L.; Dunn, C. M.; Willis, L.; DeRosa, C. A.; Fraser, C. L.; Kearns, D. B.; Huang, K.
10.1101/720532 — microbiology — Posted on 2019-07-30
218 Metal-organic framework (MOF) nanomedicine preparations of sildenafil designed for the future treatment of pulmonary arterial hypertension
Mohamed, N. A.; Abou Saleh, H.; Kameno, Y.; Marei, I.; de Nucci, G.; Ahmetaj-Shala, B.; Shala, F.; Kirkby, N. S.; Jennings, L.; Davies, R. P.; Lickiss, P. D.; Mitchell, J. A.
10.1101/718478 — pharmacology and toxicology — Posted on 2019-07-30
219 Perturbation-based mapping of natural frequencies with direct intracranial stimulation of the human brain
Amengual Roig, J. L.; Stengel, C.; Moreau, T.; Adam, C.; Chavez, M.; Valero-Cabre, A.
10.1101/718064 — neuroscience — Posted on 2019-07-30
220 Age and ketogenic diet have dissociable effects on synapse-related gene expression between hippocampal subregions
Hernandez, A. R.; Hernandez, C. M.; Truckenbrod, L. M.; Campos, K. T.; McQuail, J. A.; Bizon, J. L.; Burke, S. N.
10.1101/718445 — neuroscience — Posted on 2019-07-30
222 Altered phosphorylation of the proteasome subunit Rpt6 has minimal impact on synaptic plasticity and learning
Scudder, S. L.; Gonzales, F. R.; Howell, K. K.; Stein, I. S.; Dozier, L. E.; Anagnostaras, S. G.; Zito, K.; Patrick, G. N.
10.1101/719195 — neuroscience — Posted on 2019-07-30
225 Lifestyle-intervention-induced reduction of abdominal fat is reflected by a decreased circulating glycerol level and an increased HDL diameter
Beekman, M.; Schutte, B. A. M.; van den Akker, E. B.; Noordam, R.; Dibbets-Schneider, P.; de Geus-Oei, L.-F.; Deelen, J.; van de Rest, O.; van Heemst, D.; Feskens, E.; Slagboom, P.
10.1101/718023 — molecular biology — Posted on 2019-07-30
228 Global profiling of myristoylation in Toxoplasma gondii reveals key roles for lipidation in CDPK1 and MIC7 function
Broncel, M.; Dominicus, C.; Hunt, A.; Wallbank, B. A.; Federico, S.; Young, J. C.; Treeck, M.
10.1101/719062 — microbiology — Posted on 2019-07-30
229 Quantitative intravital imaging of Plasmodium falciparum sporozoites: A novel platform to test malaria intervention strategies
Hopp, C. S.; Kanatani, S.; Archer, N. K.; Miller, R. J.; Liu, H.; Chiou, K.; Miller, L. S.; Sinnis, P.
10.1101/716878 — microbiology — Posted on 2019-07-30
230 Bifidobacterium is enriched in gut microbiome of Kashmiri women with polycystic ovary syndrome
Hassan, S.; Kaakinen, M. A.; Draisma, H.; Ganie, M. A.; Balkhiyarova, Z.; Vogazianos, P.; Shammas, C.; Selvin, J.; Antoniades, A.; Demirkan, A.; Prokopenko, I.
10.1101/718510 — genomics — Posted on 2019-07-30
231 Mendelian Randomization analyses reveal a causal effect of thyroid function on stroke via atrial fibrillation
Marouli, E.; Kus, A.; Del Greco, F. M.; Chaker, L.; Peeters, R.; Teumer, A.; Deloukas, P.; Medici, M.
10.1101/718429 — genetics — Posted on 2019-07-30
232 Genome-wide analysis of diet and gene interactions in Drosophila uncovers the glucose transporter, CG4607, as a diet-responsive gene.
James, D. E.; Francis, D.; Ghazanfar, S.; Havula, E.; Krycer, J. R.; Senior, A.; Minard, A. Y.; Geddes, T. A.; Weiss, F.; Yang, J. Y. H.
10.1101/718304 — genetics — Posted on 2019-07-30
233 Highly reduced genomes of protist endosymbionts show evolutionary convergence
George, E. E.; Husnik, F.; Tashyreva, D.; Prokopchuk, G.; Horak, A.; Kwong, W. K.; Lukes, J.; Keeling, P. J.
10.1101/719211 — evolutionary biology — Posted on 2019-07-30
234 Metabolic control of immune-competency by odors in Drosophila
Madhwal, S.; Shin, M.; Joshi, M.; Kapoor, A.; Ur Rehman, P. M.; Gor, K.; Shim, J.; Mukherjee, T.
10.1101/718056 — developmental biology — Posted on 2019-07-30
235 Automated Cytogenetic Biodosimetry at Population-Scale
Rogan, P. K.; Lu, R.; Mucaki, E. J.; Ali, S.; Shirley, B.; Li, Y.; Wilkins, R.; Norton, F.; Sevriukova, O.; Pham, D.; Ainsbury, E.; Moquet, J.; Cooke, R.; Peerlaproulx, T.; Waller, E.; Knoll, J. H. M.
10.1101/718973 — bioinformatics — Posted on 2019-07-30
237 Induction of long-term allogeneic cell acceptance and formation of immune privileged tissue in immunocompetent Hosts
Harding, J.; Vintersten-Nagy, K.; Shutova, M.; Yang, H.; Tang, J.; Massumi, M.; Izadifar, M.; Izadifar, Z.; Zhang, P.; Li, C.; Nagy, A.
10.1101/716571 — bioengineering — Posted on 2019-07-30
239 Social interaction with an alcohol-intoxicated or cocaine-injected peer selectively alters social behaviors and drinking in adolescent male and female rats.
Gamble, D. M.; Josefson, C. C.; Hennessey, M. K.; Davis, A. M.; Waters, R. C.; Jones, B. N.; Belton, D. M.; Hall, N. I.; Costen, T. J.; Kirstein, C. L.; Maldonado-Devincci, A. M.
10.1101/718866 — animal behavior and cognition — Posted on 2019-07-30
241 Alternative splicing of circadian clock genes is temperature regulated in field-grown sugarcane
Dantas, L. L. B.; Calixto, C. P. G.; Dourado, M. M.; Carneiro, M. S.; Brown, J. W. S.; Hotta, C. T.
10.1101/718890 — plant biology — Posted on 2019-07-30
242 On the origins of a selective vulnerability to opioid addiction.
Levis, S. C.; Bentzley, B. S.; Molet, J.; Bolton, J. L.; Perrone, C. R.; Baram, T. Z.; Mahler, S. V.
10.1101/716522 — neuroscience — Posted on 2019-07-30
245 Population genomics and pathotypic evaluation of the bacterial leaf blight pathogen of rice
Zheng, J.; Song, Z.; Zheng, D.; Hu, H.; Yu, H.; Liu, H.; Zhao, Y.; Sun, M.; Ruan, L.; Liu, F.
10.1101/704221 — genomics — Posted on 2019-07-30
248 Towards standardization of immune functional assays
Mouton, W.; Albert, C.; Boccard, M.; Bartolo, F.; Oriol, G.; Lopez, J.; Pachot, A.; Textoris, J.; Mallet, F.; Brengel-Pesce, K.; Assant-Trouillet, S.
10.1101/718627 — immunology — Posted on 2019-07-30
252 Muscle overexpression of Klf15 via an AAV8-Spc5-12 construct does not provide benefits in spinal muscular atrophy mice
Ahlskog, N.; Hayler, D.; Krueger, A.; Kubinski, S.; Claus, P.; Yanez-Munoz, R. J.; Bowerman, M.
10.1101/717785 — pathology — Posted on 2019-07-30
253 Characterization of a Y-specific duplication/insertion of the anti-Mullerian hormone type II receptor gene based on a chromosome-scale genome assembly of yellow perch, Perca flavescens
Feron, R.; Zahm, M.; Cabau, C.; Klopp, C.; Roques, C.; Bouchez, O.; Eche, C.; Valiere, S.; Donnadieu, C.; Haffray, P.; Bestin, A.; Morvezen, R.; Acloque, H.; Euclide, P.; Wen, M.; Dupin-de-beyssat, E.; Schartl, M.; Postlethwait, J. H.; Schraidt, C.; Christie, M.; Larson, W.; Herpin, A.; Guiguen, Y.
10.1101/717397 — genomics — Posted on 2019-07-30
258 High-throughput mapping of long-range neuronal projection using in situ sequencing
Chen, X.; Sun, Y.; Zhan, H.; Kebschull, J. M.; Fischer, S.; Matho, K.; Huang, Z. J.; Gillis, J.; Zador, A. M.
10.1101/294637 — neuroscience — Posted on 2019-07-30
259 Can grid cell ensembles represent multiple spaces?
Spalla, D.; Dubreuil, A.; Rosay, S.; Monasson, R.; Treves, A.
10.1101/527192 — neuroscience — Posted on 2019-07-30
265 Functional recruitment of dynamin requires multimeric interactions for efficient endocytosis
Rosendale, M.; Van, T. N.; Grillo-Bosch, D.; Sposini, S.; Claverie, L.; Gauthereau, I.; Claverol, S.; Choquet, D.; Sainlos, M.; Perrais, D.
10.1101/309245 — cell biology — Posted on 2019-07-30
266 TIS7 and SKMc15 Regulate Adipocyte Differentiation and Intestinal Lipid Absorption
Vietor, I.; Cikes, D.; Piironen, K.; Gstir, R.; Tancevski, I.; Eller, P.; Demetz, E.; Hess, M.; Kuhn, V.; Degenhart, G.; Rainer, J.; Rozman, J.; Klingenspor, M.; Hrabe de Angelis, M.; Valovka, T.; Huber, L. A.
10.1101/719922 — cell biology — Posted on 2019-07-30
268 CRMP2 mediates Sema3F-dependent axon pruning and dendritic spine remodeling
Ziak, J.; Weissova, R.; Jerabkova, K.; Janikova, M.; Maimon, R.; Petrasek, T.; Pukajova, B.; Wang, M.; Brill, M. S.; Kleisnerova, M.; Kasparek, P.; Zhou, X.; Alvarez-Bolado, G.; Sedlacek, R.; Misgeld, T.; Stuchlik, A.; Perlson, E.; Balastik, M.
10.1101/719617 — neuroscience — Posted on 2019-07-30
270 Developmental Genome-Wide DNA Methylation Asymmetry Between Mouse Placenta and Embryo
Legault, L.-M.; Doiron, K.; Lemieux, A.; Caron, M.; Chan, D.; Lopes, F. L.; Bourque, G.; Sinnett, D.; McGraw, S.
10.1101/718247 — developmental biology — Posted on 2019-07-30
271 Lifespan-increasing drug nordihydroguaiaretic acid inhibits p300 and activates autophagy
Tezil, T.; Chamoli, M.; Ng, C.-P.; Simon, R. P.; Butler, V. J.; Jung, M.; Andersen, J.; Kao, A. W.; Verdin, E.
10.1101/718833 — cell biology — Posted on 2019-07-30
272 Expression of telomerase prevents ALT and maintains telomeric heterochromatin in juvenile brain tumors.
Idilli, A. I.; Cusanelli, E.; Pagani, F.; Kerschbamer, E.; Berardinelli, F.; Bernabe, M.; Cayuela, M. L.; Piazza, S.; Poliani, P. L.; Mione, M. C.
10.1101/718551 — cancer biology — Posted on 2019-07-30
273 Variational Autoencoders for Cancer Data Integration: Design Principles and Computational Practice
Simidjievski, N.; Bodnar, C.; Tariq, I.; Scherer, P.; Andres-Terre, H.; Shams, Z.; Jamnik, M.; Lio', P.
10.1101/719542 — bioinformatics — Posted on 2019-07-30
274 Assessment of network module identification across complex diseases
Choobdar, S.; Ahsen, M. E.; Crawford, J.; Tomasoni, M.; Fang, T.; Lamparter, D.; Lin, J.; Hescott, B.; Hu, X.; Mercer, J.; Natoli, T.; Narayan, R.; The DREAM Module Identification Challenge Consorti, ; Subramanian, A.; Zhang, J. D.; Stolovitzky, G.; Kutalik, Z.; Lage, K.; Slonim, D. K.; Saez-Rodriguez, J.; Cowen, L. J.; Bergmann, S.; Marbach, D.
10.1101/265553 — bioinformatics — Posted on 2019-07-30
275 Combined single-cell and spatial transcriptomics reveals the molecular, cellular and spatial bone marrow niche organization
Baccin, C.; Al-Sabah, J.; Velten, L.; Helbling, P. M.; Gruenschlaeger, F.; Hernandez-Malmierca, P.; Nombela-Arrieta, C.; Steinmetz, L. M.; Trumpp, A.; Haas, S.
10.1101/718395 — developmental biology — Posted on 2019-07-30
278 Genetic variation for root architectural traits in response to phosphorus deficiency in mungbean at the seedling stage
Reddy, V. R. P.; Aski, M.; Mishra, G. P.; Dikshit, H. K.; Singh, A.; Pandey, R.; Pal, M.; Gayacharan, ; Ramtekey, V.; Priti, ; Rai, N.
10.1101/719773 — genetics — Posted on 2019-07-30
282 Similar categorical representation from sound and sight in the occipito-temporal cortex of sighted and blind
Mattioni, S.; Rezk, M.; Battal, C.; Bottini, R.; Cuculiza Mendoza, K. E.; Oosterhof, N. N.; Collignon, O.
10.1101/719690 — neuroscience — Posted on 2019-07-30
283 THOC1 deficiency leads to late-onset nonsyndromic hearing loss through p53-mediated hair cell apoptosis
Zhang, L.; Gao, Y.; Zhang, R.; Sun, F.; Cheng, C.; Qian, F.; Duan, X.; Wei, G.; Pang, X.; Chen, P.; Chai, R.; Yang, T.; Wu, H.; Liu, D.
10.1101/719823 — genetics — Posted on 2019-07-30
285 Dynamics of Auxilin1 and GAK in clathrin-1 mediated traffic
He, K.; Song, E.; Upadhyayula, S.; Dang, S.; Gaudin, R.; Skillern, W.; Bu, K.; Capraro, B. R.; Rapoport, I.; Kusters, I.; Ma, M.; Kirchhausen, T.
10.1101/718726 — cell biology — Posted on 2019-07-30
291 Framework for determining accuracy of RNA sequencing data for gene expression profiling of single samples
Beale, H. C.; Roger, J.; Cattle, M.; McKay, L.; Learned, K.; Lyle, G.; Kephart, E.; Currie, R.; Lam, D. L.; Sanders, L.; Pfeil, J.; Vivian, J.; Bjork, I.; Salama, S.; Haussler, D.; Vaske, O.
10.1101/716829 — genomics — Posted on 2019-07-30
292 Integrative genomics identifies a convergent molecular subtype that links epigenomic with transcriptomic differences in autism
Ramaswami, G.; Won, H.; Gandal, M. J.; Haney, J.; Wang, J. C.; Wong, C. C. Y.; Sun, W.; Prabhakar, S.; Mill, J.; Geschwind, D. H.
10.1101/718932 — genomics — Posted on 2019-07-30
295 Evaluating potential drug targets through human loss-of-function genetic variation
Minikel, E. V.; Karczewski, K. J.; Martin, H. C.; Cummings, B. B.; Whiffin, N.; Rhodes, D.; Alfoldi, J.; Trembath, R. C.; van Heel, D. A.; Daly, M. J.; Genome Aggregation Database Production Team, ; Genome Aggregation Database Consortium, ; Schreiber, S. L.; MacArthur, D. G.
10.1101/530881 — genomics — Posted on 2019-07-30
297 Multi-ancestry GWAS of the electrocardiographic PR interval identifies 210 loci underlying cardiac conduction
Ntalla, I.; Weng, L.-C.; Cartwright, J. H.; Weber Hall, A.; Sveinbjornsson, G.; Tucker, N. R.; Choi, S. H.; Chaffin, M. D.; Roselli, C.; Barnes, M. R.; Mifsud, B.; Warren, H. R.; Hayward, C.; Marten, J.; Cranley, J. J.; Concas, M. P.; Gasparini, P.; Boutin, T.; Kolcic, I.; Polasek, O.; Rudan, I.; Araujo, N. M.; Lima-Costa, M. F.; Ribeiro, A. L. P.; Souza, R. P.; Tarazona-Santos, E.; Giedraitis, V.; Ingelsson, E.; Mahajan, A.; Morris, A. P.; Del Greco M., F.; Foco, L.; Gogele, M.; Hicks, A. A.; Cook, J. P.; Lind, L.; Lindgren, C. M.; Sundstrom, J.; Nelson, C. P.; Riaz, M. B.; Samani, N. J.; Sin
10.1101/712398 — genetics — Posted on 2019-07-30
299 Spontaneous polyploids and antimutators compete during the evolution of mutator cells
Tracy, M.; Lee, M.; Hearn, B.; Dowsett, I.; Thurber, L.; Loo, J.; Loeb, A. M.; Preston, K.; Tuncel, M.; Ghodsian, N.; Bode, A.; Tang, T.; Herr, A. J.
10.1101/718163 — cancer biology — Posted on 2019-07-30
300 The glycine locating at random coil of picornaviruses VP3 enhances viral pathogenicity by targeting p53 to promote apoptosis and autophagy
Mao, R.; Yang, F.; Sun, D.; Zhou, X.; Zhu, Z.; Guo, X.; Liu, H.; Tian, H.; Zhang, K.; Wen, D.; Wu, Q.; Ma, X.; Liu, X.; zheng, h.
10.1101/718130 — microbiology — Posted on 2019-07-30
304 Homeodomain-interacting protein kinase (Hipk) is required for nervous system and muscle structure and function
Wang, S.; Sinclair, D. A. R.; Kim, H.-Y.; Kinsey, S. D.; Yoo, B.; Wong, K. K. L.; Krieger, C.; Harden, N.; Verheyen, E. M.
10.1101/719765 — neuroscience — Posted on 2019-07-30
307 Shigella sonnei infection of zebrafish reveals that O-antigen mediates neutrophil tolerance and dysentery incidence
Torraca, V.; Kaforou, M.; Watson, J.; Duggan, G. M.; Guerrero-Gutierrez, H.; Krokowski, S.; Hollinshead, M.; Clarke, T. B.; Mostowy, R. J.; Tomlinson, G. S.; Sancho-Shimizu, V.; Clements, A.; Mostowy, S.
10.1101/719781 — microbiology — Posted on 2019-07-30
310 Goiter parenchyma, blood vessels and lymphatics contain Staphylococcus epidermidis - saprophyte or pathogen?
Durowicz, S.; Zaleska, M.; Olszewski, W. L.; Stelmach, E.; Piskorska, K. P.; Swoboda-Kopec, E.; Tarnowski, W.
10.1101/719732 — microbiology — Posted on 2019-07-30
311 Neural crest cells bulldoze through the microenvironment using Aquaporin-1 to stabilize filopodia
McLennan, R.; McKinney, M. C.; Teddy, J. M.; Morrison, J. A.; Kasemeier-Kulesa, J. C.; Ridenour, D. A.; Manthe, C. A.; Giniunaite, R.; Robinson, M.; Baker, R. E.; Maini, P. K.; Kulesa, P. M.
10.1101/719666 — developmental biology — Posted on 2019-07-30
312 Factors associated with cholera outbreaks, Nairobi County, July 2017: a case control study
Mwenda, V.; Niyomwungere, A.; Oyugi, E.; Githuku, J.; Obonyo, M.; Roka, Z. G.
10.1101/719641 — epidemiology — Posted on 2019-07-30
313 Elevated intracellular cAMP concentration mediates growth suppression in glioma cells
Safitri, D.; Potter, H.; Harris, M.; Winfield, I.; Kopanitsa, L.; Yeung, H. Y.; Svensson, F.; Rahman, T.; Harper, M.; Bailey, D.; Ladds, G.
10.1101/718601 — pharmacology and toxicology — Posted on 2019-07-30
314 Symmetry breaking during morphogenesis of a mechanosensory organ
Erzberger, A.; Jacobo, A.; Dasgupta, A.; Hudspeth, A. J.
10.1101/718502 — biophysics — Posted on 2019-07-30
315 Optical interrogation of sympathetic neuronal effects on macroscopic cardiac monolayer dynamics
Burton, R. A. B.; Tomek, J.; Ambrosi, C. M.; Larsen, H. E.; Sharkey, A. R.; Capel, R. A.; Bilton, S.; Klimas, A.; Stephens, G.; Li, D.; Gallone, G.; Herring, N.; Mann, E.; Kumar, A.; Kramer, H.; Entcheva, E.; Paterson, D. J.; Bub, G.
10.1101/717991 — biophysics — Posted on 2019-07-30
319 Bi-Alignments as Models of Incongruent Evolution of RNA Sequence and Structure
Waldl, M.; Will, S.; Wolfinger, M. T.; Hofacker, I. L.; Stadler, P. F.
10.1101/631606 — bioinformatics — Posted on 2019-07-29
323 A catalog of cis-regulatory mutations in 12 major cancer types
Cheng, Z.; Vermeulen, M.; Rollins-Green, M.; DeVeale, B.; Babak, T.
10.1101/710103 — genomics — Posted on 2019-07-29
324 The Clp proteolytic system acts as an essential nexus for Plasmodium plastid biogenesis
Florentin, A.; Stephens, D. R.; Brooks, C. F.; Baptista, R. P.; Muralidharan, V.
10.1101/718452 — microbiology — Posted on 2019-07-29
325 Global mycorrhizal plants distribution linked to terrestrial carbon stocks
Soudzilovskaia, N. A.; van Bodegom, P. M.; Terrer Moreno, C.; van't Zelfde, M.; McCallum, I.; Fisher, J. B.; McCormack, L. M.; Brundrett, M.; de Sa, N. C.; Tedersoo, L.
10.1101/331884 — ecology — Posted on 2019-07-29
327 Evolutionary Dynamics of CAR T Cell Therapy
Kimmel, G. J.; Locke, F. L.; Altrock, P. M.
10.1101/717074 — cancer biology — Posted on 2019-07-29
328 Regional Differences Following Partial Salivary Gland Resection
O'Keefe, K. J.; DeSantis, K. A.; Altrieth, A. L.; Nelson, D. A.; Taroc, E. Z. M.; Stabell, A. R.; Pham, M. T.; Larsen, M.
10.1101/713230 — pathology — Posted on 2019-07-29
329 The Aging Microenvironment Shapes Alveolar Macrophage Identity in Aging
McQuattie-Pimentel, A. C.; Ren, Z.; Joshi, N.; Watanabe, S.; Stoeger, T.; Chi, M.; Lu, Z.; Sichizya, L.; Piseaux, R.; Chen, C.-I.; Soberanes, S.; Reyfman, P. A.; Walter, J. M.; Anekalla, K. R.; Davis, J. M.; Helmin, K. A.; Runyan, C. E.; Abdala-Valencia, H.; Nam, K.; Meliton, A. Y.; Winter, D. R.; Morimoto, R. I.; Mutlu, G. M.; Bharat, A.; Gottardi, C. J.; Perlman, H.; Ridge, K. M.; Chandel, N. S.; Sznajder, J. I.; Balch, W. E.; Singer, B. D.; Misharin, A. V.; Budinger, G. S.
10.1101/717033 — immunology — Posted on 2019-07-29
333 A modification to the life cycle of the parasite Trypanosoma brucei
Schuster, S.; Subota, I.; Lisack, J.; Zimmermann, H.; Reuter, C.; Morriswood, B.; Engstler, M.
10.1101/717975 — microbiology — Posted on 2019-07-29
336 Multivariate consistency of resting-state fMRI connectivity maps acquired on a single individual over 2.5 years, 13 sites and 3 vendors
Badhwar, A.; Collin-Verreault, Y.; Orban, P.; Urchs, S.; Chouinard, I.; Vogel, J.; Potvin, O.; Duchesne, S.; Bellec, P.
10.1101/497743 — neuroscience — Posted on 2019-07-29
337 Inflammatory agents partially explain changes in cortical thickness and surface area related to body mass index in adolescence
Prats-Soteras, X.; Jurado, M. A.; Ottino-Gonzalez, J.; Garcia-Garcia, I.; Segura, B.; Caldu, X.; Sanchez-Garre, C.; Miro, N.; Tor, C.; Sender-Palacios, M. J.; Garolera, M.
10.1101/698696 — neuroscience — Posted on 2019-07-29
338 Long solids retention times and attached growth phase favor prevalence of comammox bacteria in nitrogen removal systems.
Cotto, I.; Dai, Z.; Huo, L.; Anderson, C. L.; Vilardi, K. J.; Ijaz, U. Z.; Khunjar, W.; Wilson, C.; De Clippeleir, H.; Gilmore, K.; Bailey, E.; Pinto, A.
10.1101/696351 — microbiology — Posted on 2019-07-29
339 Analysis of DNM3 and VAMP4 as genetic modifiers of LRRK2 Parkinsons disease
Brown, E. E.; Blauwendraat, C.; Trinh, J.; Rizig, M.; Nalls, M.; Leveille, E.; Ruskey, J.; Jonvik, H.; Tan, M.; Bandres-Ciga, S.; Hassin-Baer, S.; Brockmann, K.; Infante, J.; Tolosa, E.; Ezquerra, M.; Benromdhan, S.; Benmahdjoub, M.; Hardy, J.; Singleton, A.; Alcalay, R.; Gasser, T.; Grosset, D.; Williams, N.; Pittman, A.; Gan-Or, Z.; Fernandez-Santiago, R.; Brice, A.; Lesage, S.; Farrer, M.; Wood, N.; Morris, H. R.
10.1101/686550 — genetics — Posted on 2019-07-29
340 Neural dynamics of associative learning during human sleep
Canales-Johnson, A. F.; Merlo, E.; Bekinschtein, T. A.; Arzi, A.
10.1101/372037 — neuroscience — Posted on 2019-07-29
341 MicrographCleaner: a python package for cryo-EM micrograph cleaning using deep learning
Sanchez-Garcia, R.; Segura, J.; Maluenda, D.; Sorzano, C. O. S.; Carazo, J. M.
10.1101/677542 — bioinformatics — Posted on 2019-07-29
342 Indirect sexual selection drives rapid sperm protein evolution
Wilburn, D. B.; Tuttle, L. M.; Klevit, R. E.; Swanson, W. J.
10.1101/682062 — biochemistry — Posted on 2019-07-29
344 The genome of the endangered dryas monkey provides new insights into the evolutionary history of the vervets
van der Valk, T.; Gonda, C. M.; Silegowa, H.; Almanza, S.; Sifuentes-Romero, I.; Hart, J.; Hart, T.; Detwiler, K.; Guschanski, K.
10.1101/613273 — genomics — Posted on 2019-07-29
345 Co-infections by non-interacting pathogens are not independent and require new tests of interaction
Hamelin, F. M.; Allen, L. J.; Bokil, V. A.; Gross, L. J.; Hilker, F. M.; Jeger, M. J.; Manore, C. A.; Power, A. G.; Rua, M. A.; Cunniffe, N. J.
10.1101/618900 — epidemiology — Posted on 2019-07-29
347 The impact of gut microbiota on depressive-like behaviors and adult hippocampal neurogenesis requires the endocannabinoid system
Chevalier, G.; Siopi, E.; Guenin-Mace, L.; Pascal, M.; Laval, T.; Rifflet, A.; Gomperts Boneca, I.; Demangel, C.; Leulier, F.; Lepousez, G.; Eberl, G.; Lledo, P.-M.
10.1101/718288 — neuroscience — Posted on 2019-07-29
348 Sex Differences in Age-related Impairments Vary across Cognitive and Physical Assessments in Rats
Hernandez, A. R.; Truckenbrod, L. M.; Campos, K. T.; Williams, S. A.; Burke, S. N.
10.1101/718361 — neuroscience — Posted on 2019-07-29
349 Dopaminergic control of postnatal mammalian spinal network function is predominantly inhibitory.
Sharples, S. A.; Burma, N.; Borowska-Fielding, J.; Kwok, C. H. T.; Eaton, S. E. A.; Baker, G.; Jean-Xavier, C.; Zhang, Y.; Trang, T.; Whelan, P.
10.1101/715326 — neuroscience — Posted on 2019-07-29
350 Untangling featural and conceptual object representations
Grootswagers, T.; Robinson, A.; Shatek, S. M.; Carlson, T. A.
10.1101/607499 — neuroscience — Posted on 2019-07-29
351 tagPAINT: covalent labelling of genetically encoded protein tags for DNA-PAINT imaging
Nieves, D. J.; Hilzenrat, G.; Tran, J.; Yang, Z.; MacRae, H. H.; Baker, M. A. B.; Gooding, J. J.; Gaus, K.
10.1101/604462 — biophysics — Posted on 2019-07-29
352 Neural signals to violations of abstract rules using speech-like stimuli
Vidal, Y.; Brusini, P.; Bonfieni, M.; Mehler, J.; Bekinschtein, T.
10.1101/581355 — neuroscience — Posted on 2019-07-29
353 Non-cell autonomous OTX2 transcription factor regulates anxiety-related behaviors in the mouse
Vincent, C.; Gilabert-Juan, J.; Alvarez-Fischer, D.; Di Nardo, A. A.; Krebs, M.-O.; Le Pen, G.; Prochiantz, A.
10.1101/710848 — neuroscience — Posted on 2019-07-29
355 Transcriptomic and Cellular Decoding of Regional Brain Vulnerability to Neurodevelopmental Disorders
Seidlitz, J.; Nadig, A.; Liu, S.; Bethlehem, R. A. I.; Vertes, P. E.; Morgan, S. E.; Vasa, F.; Romero-Garcia, R.; Lalonde, F. M.; Clasen, L. S.; Blumenthal, J. D.; Paquola, C.; Bernhardt, B.; Wagstyl, K.; Polioudakis, D.; de la Torre-Ubieta, L.; Geschwind, D. H.; Han, J. C.; Lee, N. R.; Murphy, D. G.; Bullmore, E. T.; Raznahan, A.
10.1101/573279 — neuroscience — Posted on 2019-07-29
359 TCF7L2 is a terminal selector that regulates postmitotic differentiation programs and excitability patterns in the thalamus
Lipiec, M. A.; Kozinski, K.; Zajkowski, T.; Dabrowski, M.; Chakraborty, C.; Urban-Ciecko, J.; Toval, A.; Ferran, J.; Nagalski, A.; Wisniewska, M. B.
10.1101/515874 — neuroscience — Posted on 2019-07-29
361 Phase separation of YAP reorganizes genome topology for long-term YAP target gene expression
Cai, D.; Feliciano, D.; Dong, P.; Flores, E.; Gruebele, M.; Porat-Shliom, N.; Sukenik, S.; Liu, Z.; Lippincott-Schwartz, J.
10.1101/438416 — cell biology — Posted on 2019-07-29
363 Multivariate Stochastic Volatility Modeling of Neural Data
Phan, T. D.; Wachter, J. A.; Solomon, E. A.; Kahana, M. J.
10.1101/371203 — neuroscience — Posted on 2019-07-29
364 EpiGraph: an open-source platform to quantify epithelial organization
Vicente-Munuera, P.; Gomez-Galvez, P. J.; Tetley, R. J.; Forja, C.; Tagua, A.; Letran, M.; Tozluoglu, M.; Mao, Y.; Escudero, L. M.
10.1101/217521 — developmental biology — Posted on 2019-07-29
368 The Metabotropic Glutamate Receptor 5 Negative Allosteric Modulator Fenobam: Pharmacokinetics, Side Effects, and Analgesic Effects in Healthy Human Subjects.
Cavallone, L. F.; Montana, M. C.; Frey, K.; Kallogjeri, D.; Wages, J. M.; Rodebaugh, T. L.; Doshi, T.; Kharasch, E. D.; Gereau, R. W.
10.1101/391383 — neuroscience — Posted on 2019-07-29
370 Reshaping the Hexagone: the genetic landscape of modern France
Biagini, S. A.; Carracedo, A.; Comas, D.; Calafell, F.
10.1101/718098 — genetics — Posted on 2019-07-29
371 An overview of data-driven HADDOCK strategies in CAPRI rounds 38-45.
Koukos, P. I.; Roel-Touris, J.; Ambrosetti, F.; Geng, C.; Schaarschmidt, J.; Trellet, M. E.; Melquiond, A. S. J.; Xue, L.; Vargas Honorato, R.; Moreira, I.; Kurkcuoglu, Z.; Vangone, A.; Bonvin, A. M. J. J.
10.1101/718122 — bioinformatics — Posted on 2019-07-29
372 Alternate approach to stroke phenotyping identifies a genetic risk locus for small vessel stroke
von Berg, J.; van der Laan, S. W.; McArdle, P. F.; Malik, R.; Kittner, S. J.; Mitchell, B. D.; Worrall, B. B.; de Ridder, J.; Pulit, S.
10.1101/718221 — genetics — Posted on 2019-07-29
373 Plant responses to butterfly oviposition partly explain preference-performance relationships on different brassicaceous species
Griese, E.; Pineda, A.; Pashalidou, F. G.; Pizarro Iradi, E.; Hilker, M.; Dicke, M.; Fatouros, N. E.
10.1101/706044 — ecology — Posted on 2019-07-29
374 Nicotianamine synthase 2 is required for symbiotic nitrogen fixation in Medicago truncatula nodules
Escudero, V.; Abreu, I.; del Sastre, E.; Tejada-Jimenez, M.; Larue, C.; Novoa-Aponte, L.; Wen, J.; Mysore, K. S.; Abadia, J.; Arguello, J. M.; Castillo-Michel, H.; Alvarez-Fernandez, A.; Imperial, J.; Gonzalez-Guerrero, M.
10.1101/717983 — plant biology — Posted on 2019-07-29
376 Gut microbiome shifts with urbanization and potentially facilitates a zoonotic pathogen in a wading bird
Hernandez, S. M.; Murray, M. H.; Lankau, E. W.; Kidd, A. D.; Welch, C. N.; Ellison, T.; Adams, H. C.; Lipp, E. K.
10.1101/718213 — ecology — Posted on 2019-07-29
378 DeepHiC: A Generative Adversarial Network for Enhancing Hi-C Data Resolution
Hong, H.; Jiang, S.; Li, H.; Quan, C.; Zhao, C.; Li, R.; Li, W.; Du, G.; Yin, X.; Huang, Y.; Li, C.; Chen, H.; Bo, X.
10.1101/718148 — bioinformatics — Posted on 2019-07-29
379 Automated recognition of functional compound-protein relationships in literature
Günther, S.; Döring, K.; Qaseem, A.; Telukunta, K. K.; Becer, M.; Thomas, P.
10.1101/718205 — bioinformatics — Posted on 2019-07-29
380 High throughput competitive fluorescence polarization assay reveals functionalredundancy in the S100 protein family
Simon, M.; Gogl, G.; Ecsedi, P.; Kovacs, G. M.; Poti, A.; Remenyi, A.; Kardos, J.; Nyitray, L.
10.1101/718155 — biochemistry — Posted on 2019-07-29
381 Maintenance of adaptive dynamics in a bottlenecked range-edge population that retained outcrossing
Takou, M.; Hämälä, T.; Steige, K. A.; Koch, E.; Dittberner, H.; Yant, L.; Genete, M.; Sunyaev, S.; Castric, V.; Vekemans, X.; Savolainen, O.; de Meaux, J.
10.1101/709873 — evolutionary biology — Posted on 2019-07-29
382 Native and synthetic methanol assimilation in Saccharomyces cerevisiae
Espinosa, M. I.; Valgepea, K.; Gonzalez-Garcia, R. A.; Scott, C.; Pretorius, I. S.; Marcellin, E.; Paulsen, I. T.; Williams, T.
10.1101/717942 — synthetic biology — Posted on 2019-07-29
385 Epicardial therapy with atrial appendage micrografts salvages myocardium after infarction
Yanbo, X.; Lampinen, M. A.; Takala, J. M.; Sikorski, V. T. J.; Soliymani, R.; Tarkia, M.; Lalowski, M. M.; Mervaala, E. M. A.; Kupari, M.; Zheng, Z.; Hu, S.; Harjula, A.; Kankuri, E.; Consortium, A.
10.1101/712778 — bioinformatics — Posted on 2019-07-29
387 Broad substrate-specific phosphorylation events are associated with the initial stage of plant cell wall recognition in Neurospora crassa
Horta, M. A. C.; Thieme, N.; Gao, Y.; Burnum-Johnson, K. E.; Nicora, C. D.; Gritsenko, M. A.; Lipton, M. S.; Mohanraj, K.; Jose de Assis, L.; Lin, L.; Tian, C.; Braus, G. H.; Borkovich, K. A.; Schmoll, M.; Larrondo, L. F.; Samal, A.; Goldman, G. H.; Benz, J. P.
10.1101/711085 — molecular biology — Posted on 2019-07-29
390 Growth trajectories better reflect the influence of soil variation than functional traits in a widespread pioneer Neotropical tree
Levionnois, S.; Tysklind, N.; Nicolini, E.; Ferry, B.; Troispoux, V.; Le Moguedec, G.; Morel, H.; Stahl, C.; Coste, S.; Caron, H.; Heuret, P.
10.1101/351197 — ecology — Posted on 2019-07-29
392 Correcting for sparsity and non-independence in glycomic data through a systems biology framework
Bao, B.; Kellman, B. P.; CHIANG, W.-T. W. T.; York, A. K.; Mohammad, M. A.; Haymond, M. W.; Bode, L.; Lewis, N. E.
10.1101/693507 — systems biology — Posted on 2019-07-29
397 Exposure to parasitic protists and helminths changes the intestinal community structure of bacterial microbiota but not of eukaryotes in a cohort of mother-child binomial from a semi-rural setting in Mexico
Partida-Rodriguez, O.; Nieves-Ramirez, M.; Laforest-Lapointe, I.; Brown, E.; Parfrey, L.; Reynolds, L.; Valdez-Salazar, A.; Thorson, L.; Moran-Silva, P.; Gonzalez, E.; Rascon-Castelo, E.; Magana, U.; Hernandez, E.; Rojas Velazquez, L.; Torres, J.; Arrieta, M. C.; Ximenez-Garcia, C.; Finlay, B. B.
10.1101/717165 — microbiology — Posted on 2019-07-28
398 IFITMs Inhibit Cell Fusion Mediated by Trophoblast Syncytins
Zani, A.; Zhang, L.; Kenney, A.; McMichael, T. M.; Kwiek, J. J.; Liu, S.-L.; Yount, J. S.
10.1101/713032 — immunology — Posted on 2019-07-28
399 EuRBPDB: a comprehensive resource for annotation, functional and oncological investigation of eukaryotic RNA binding proteins (RBPs)
Liao, J.-Y.; Yang, B.; Zhang, Y.-C.; Wang, X.-J.; Ye, Y.; Peng, J.-W.; Yang, Z.-Z.; He, J.-H.; Zhang, Y.; Hu, K.; Lin, D.-C.; Yin, D.
10.1101/713164 — bioinformatics — Posted on 2019-07-28
402 Preclinical validation of a repurposed metal chelator as a community-based therapeutic for hemotoxic snakebite
Albulescu, L.-O.; Hale, M.; Ainsworth, S.; Alsolaiss, J.; Crittenden, E.; Calvete, J. J.; Wilkinson, M. C.; Harrison, R. A.; Kool, J.; Casewell, N. R.
10.1101/717280 — pharmacology and toxicology — Posted on 2019-07-28
405 Rational design of hepatitis C virus E2 core nanoparticle vaccines
He, L.; Tzarum, N.; Lin, X.; Shapero, B.; Sou, C.; Mann, C.; Stano, A.; Zhang, L.; Nagy, K.; Giang, E.; Law, M.; Wilson, I. A.; Zhu, J.
10.1101/717538 — microbiology — Posted on 2019-07-28
406 Titrating gene expression with series of systematically compromised CRISPR guide RNAs
Jost, M.; Santos, D. A.; Saunders, R. A.; Horlbeck, M. A.; Hawkins, J. S.; Scaria, S. M.; Norman, T. M.; Hussmann, J. A.; Liem, C. R.; Gross, C. A.; Weissman, J. S.
10.1101/717389 — genomics — Posted on 2019-07-28
407 Evolution of a pest: towards the complete neuroethology of Drosophila suzukii and the subgenus Sophophora
Keesey, I. W.; Zhang, J.; Depetris-Chauvin, A.; Obiero, G. F.; Knaden, M.; Hansson, B. S.
10.1101/717322 — evolutionary biology — Posted on 2019-07-28
409 Dormancy dampens the microbial distance-decay relationship
Locey, K.; Muscarella, M.; Larsen, M.; Bray, S.; Jones, S.; Lennon, J. T.
10.1101/717546 — microbiology — Posted on 2019-07-28
411 Efficient RNP-directed human gene targeting reveals SPDEF is required for IL-13-induced mucostasis
Koh, K. D.; Siddiqui, S.; Cheng, D.; Bonser, L. R.; Sun, D. I.; Zlock, L. T.; Finkbeiner, W. E.; Woodruff, P. G.; Erle, D. J.
10.1101/716670 — molecular biology — Posted on 2019-07-28
412 Targeted metagenomic sequencing enhances the identification of pathogens associated with acute infection.
Goh, C.; Golubchik, T.; Ansari, M. A.; de Cesare, M.; Trebes, A.; Elliott, I.; Bonsall, D.; Piazza, P.; Brown, A.; Slawinski, H.; Martin, N.; Defres, S.; Griffiths, M. J.; Bray, J. E.; Maiden, M. C.; Hutton, P.; Hinds, C. J.; Solomon, T.; Barnes, E.; Pollard, A. J.; Sadarangani, M.; Knight, J. C.; Bowden, R.
10.1101/716902 — microbiology — Posted on 2019-07-28
415 Galectin-14 expression in ovarian cancer.
Oliveira Fernandes de Araujo, L.; St-Pierre, Y.
10.1101/717793 — cancer biology — Posted on 2019-07-28
416 Muscle overexpression of Klf15 via an AAV8-Spc5-12 construct does not provide benefits in spinal muscular atrophy mice
Ahlskog, N.; Hayler, D.; Kruger, A.; Kubinski, S.; Claus, P.; Yanez-Munoz, R. J.; Bowerman, M.
10.1101/717785 — pathology — Posted on 2019-07-28
417 Phase variation in Mycobacterium tuberculosis glpK produces transiently heritable drug tolerance
Safi, H.; Gopal, P.; Lingaraju, S.; Ma, S.; Levine, C.; Dartois, V.; Yee, M.; Li, L.; Blanc, L.; Liang, H.-P. H.; Husain, S.; Hoque, M.; Soteropoulos, P.; Rustad, T.; Sherman, D.; Dick, T.; Alland, D.
10.1101/717272 — microbiology — Posted on 2019-07-28
424 A mutation in Hnrnph1 that decreases methamphetamine-induced reinforcement, reward, and dopamine release and increases synaptosomal hnRNP H and mitochondrial proteins
Ruan, Q. T.; Yazdani, N.; Blum, B. C.; Beierle, J. A.; Lin, W.; Coelho, M. A.; Fultz, E. K.; Healy, A. F.; Shahin, J. R.; Kandola, A. K.; Luttik, K. P.; Zheng, K.; Smith, N. J.; Cheung, J.; Mortazavi, F.; Apicco, D. J.; Varman, D. R.; Ramamoorthy, S.; Ash, P. E. A.; Rosene, D.; Emili, A.; Wolozin, B.; Szumlinski, K. K.; Bryant, C. D.
10.1101/717728 — neuroscience — Posted on 2019-07-28
426 Transpeptidase PBP2 governs initial localization and activity of major cell-wall synthesis machinery in Escherichia coli
Wollrab, E.; Ozbaykal, G.; Vigouroux, A.; Cordier, B.; Simon, F.; Chaze, T.; Matondo, M.; van Teeffelen, S.
10.1101/716407 — microbiology — Posted on 2019-07-28
427 Innate immune recognition of a bacterial MAMP leads to conditional activation of pro- or anti-inflammatory responses
Park, J. H.; Cornick, S.; Nigro, G.; Bertin, G.; Dejardin, F.; Smits, R.; Berard, M.; Langa Vives, F.; Gomperts Boneca, I.; Gewirtz, A.; Chassaing, B.; Barnich, N.; Sansonetti, P.; Eberl, G.
10.1101/717256 — immunology — Posted on 2019-07-28
428 Is shed hair the most effective non-invasive resource for estimating wild pedigrees?
Khan, A.; Patel, K. G.; Bhattacharjee, S.; Sharma, S.; Chugani, A. N.; Sivaraman, K.; Hosawad, V.; Sahu, Y. K.; Reddy, G. V.; Ramakrishnan, U.
10.1101/714964 — genomics — Posted on 2019-07-28
429 Genomic Influences on Self-Reported Childhood Maltreatment
Dalvie, S.; Maihofer, A. X.; Coleman, J. R.; Bradley, B.; Breen, G.; Brick, L. A.; Chen, C.-Y.; Choi, K. W.; Duncan, L. E.; Guffanti, G.; Haas, M.; Harnal, S.; Liberzon, I.; Nugent, N. R.; Provost, A. C.; Ressler, K. J.; Torres, K.; Amstadter, A. B.; Austin, S. B.; Baker, D. G.; Bolger, E. A.; Bryant, R. A.; Calabrese, J. R.; Delahanty, D. L.; Farrer, L. A.; Feeny, N. C.; Flory, J. D.; Forbes, D.; Galea, S.; Gautam, A.; Gelernter, J.; Hammamieh, R.; Jett, M.; Junglen, A. G.; Kaufman, M. L.; Kessler, R. C.; Khan, A.; Kranzler, H. R.; Lebois, L. A.; Marmar, C.; Mavissakalian, M. R.; McFarlane, A
10.1101/717314 — genomics — Posted on 2019-07-28
430 Human footprint differentially impacts genetic connectivity of four wide-ranging mammals in a fragmented landscape
Thatte, P.; Chandramouli, A.; Tyagi, A.; Patel, K.; Baro, P.; Chhattani, H.; Ramakrishnan, U.
10.1101/717777 — ecology — Posted on 2019-07-28
432 Heritable temporal gene expression patterns correlate with metabolomic seed content in developing hexaploid oat seed
Hu, H.; Gutierrez-Gonzalez, J.; Liu, X.; Yeats, T.; Garvin, D.; Hoekenga, O.; Sorrells, M.; Gore, M.; Jannink, J.-L.
10.1101/709774 — genetics — Posted on 2019-07-28
433 Single chromosome gains can function as metastasis suppressors and metastasis promoters
Vasudevan, A.; Baruah, P. S.; Smith, J. C.; Wang, Z.; Sayles, N. M.; Andrews, P.; Kendall, J.; Leu, J.; Chunduri, N. K.; Levy, D.; Wigler, M.; Storchova, Z.; Sheltzer, J. M.
10.1101/590547 — cancer biology — Posted on 2019-07-28
434 Age-related Gene Expression Signatures (AGES) in rats demonstrate early, late, and linear transcriptional changes from multiple tissues
Shavlakadze, T.; Morris, M.; Fang, J.; Wang, S. X.; Zhou, W.; Tse, H. W.; Mondragon-Gonzalez, R.; Roma, G.; Glass, D. J.
10.1101/717835 — systems biology — Posted on 2019-07-28
436 Lentivirus-mediated long-term overexpression of specific microRNA in mammalian cells
Qiao, S.; Zhao, Y.; Li, K.; Sun, Y.; Sun, L.; Hou, X.; Tian, H.; Ye, K.; Nie, Y.; Tian, W.
10.1101/717330 — molecular biology — Posted on 2019-07-28
438 Pathogenic and uncertain genetic variants have clinical cardiac correlates in diverse biobank participants
Pottinger, T. D.; Puckelwartz, M. J.; Pesce, L. L.; Robinson, A.; Kearns, S.; Pacheco, J. A.; Rasmussen-Torvik, L. J.; Smith, M. E.; Chisholm, R.; McNally, E. M.
10.1101/716662 — genomics — Posted on 2019-07-28
443 FungalRoot: Global online database of plant mycorrhizal associations
Soudzilovskaia, N. A.; Vaessen, S.; Barcelo, M.; He, J.; Rahimlou, S.; Abarenkov, K.; Brundrett, M.; Gomes, S.; Merckx, V.; Tederesoo, L.
10.1101/717488 — ecology — Posted on 2019-07-28
444 Role for Merlin/NF2 in transcription elongation through interaction with the PAF complex
Roehrigh, A. E.; Klupsch, K.; Oses-Prieto, J. A.; Chaib, S.; Henderson, S.; Emmett, W.; Young, L. C.; Surinova, S.; Blees, A.; Pfeiffer, A.; Tijani, M.; Brunk, F.; Hartig, N.; Munoz-Alegre, M.; Hergovich, A.; Jennings, B.; Burlingame, A. L.; Rodriguez-Viciana, P.
10.1101/717769 — cancer biology — Posted on 2019-07-28
445 Parachute geckos free fall into synonymy: Gekko phylogeny, and a new subgeneric classification, inferred from thousands of ultraconserved elements
Wood, P. L.; Guo, X.; Travers, S. L.; Su, Y.-C.; Olson, K. V.; Bauer, A. M.; Grismer, L. L.; Siler, C. D.; Moyle, R. G.; Andersen, M. J.; Brown, R. M.
10.1101/717520 — zoology — Posted on 2019-07-28
450 The Aging Microenvironment Shapes Alveolar Macrophage Identity in Aging
McQuattie-Pimentel, A. C.; Ren, Z.; Joshi, N.; Watanabe, S.; Stoeger, T.; Chi, M.; Lu, Z.; Sichizya, L.; Piseaux, R.; Chen, C.-I.; Soberanes, S.; Reyfman, P. A.; Walter, J. M.; Anekalla, K. R.; Davis, J. M.; Helmin, K. A.; Runyan, C. E.; Abdala-Valencia, H.; Nam, K.; Meliton, A. Y.; Winter, D. R.; Morimoto, R. I.; Mutlu, G. M.; Bharat, A.; Gottardi, C. J.; Perlman, H.; Ridge, K. M.; Chandel, N. S.; Sznajder, J. I.; Balch, W. E.; Singer, B. D.; Misharin, A. V.; Budinger, G. S.
10.1101/717033 — immunology — Posted on 2019-07-28
453 On Some Problems of Estimating Fundamental Niche from Physiological Data
Gutierrez-Ruelas, J. S.; Jimenez, L.; Quiroz-Reyes, A. P.; Sotelo-Pedroza, S. C.; Soberon, J.
10.1101/716688 — ecology — Posted on 2019-07-28
455 Template plasmid integration in germline genome-edited cattle.
Norris, A. L.; Lee, S. S.; Greenlees, K. J.; Tadesse, D. A.; Miller, M. F.; Lombardi, H.
10.1101/715482 — genomics — Posted on 2019-07-28
456 Deep sampling of Hawaiian Caenorhabditis elegans reveals high genetic diversity and admixture with global populations
Crombie, T. A.; Zdraljevic, S.; Cook, D. E.; Tanny, R. E.; Brady, S. C.; Wang, Y.; Evans, K. S.; Hahnel, S.; Lee, D.; Rodriguez, B. C.; Zhang, G.; van der Zwaag, J.; Kiontke, K. C.; Andersen, E. C.
10.1101/716928 — ecology — Posted on 2019-07-28
457 A water-soluble, synthetic auxin analog for rapid degradation of target proteins during C. elegans development
Martinez, M. A.; Kinney, B. A.; Ashley, G.; Ragle, J. M.; Hammell, C. M.; Ward, J. D.; Matus, D. Q.
10.1101/716837 — developmental biology — Posted on 2019-07-28
458 A Clinical Phenotyping Algorithm to Identify Cases of Chronic Obstructive Pulmonary Disease in Electronic Health Records
Martucci, V. L.; Liu, N.; Kerchberger, V. E.; Osterman, T. J.; Torstenson, E.; Richmond, B.; Aldrich, M.
10.1101/716779 — bioinformatics — Posted on 2019-07-28
459 Quantitative Immunology for Physicists
Altan-Bonnet, G.; Mora, T.; Walczak, A. M.
10.1101/696567 — immunology — Posted on 2019-07-28
460 Where Natural Protein Sequences Stand out From Randomness
Weidmann, L.; Dijkstra, T.; Kohlbacher, O.; Lupas, A. N.
10.1101/706119 — evolutionary biology — Posted on 2019-07-28
463 Replicated anthropogenic hybridisations reveal parallel patterns of admixture in marine mussels.
Simon, A.; Arbiol, C.; Nielsen, E. E.; Couteau, J.; Sussarellu, R.; Burgeot, T.; Bernard, I.; Coolen, J. W. P.; Lamy, J.-B.; Robert, S.; Skazina, M.; Strelkov, P.; Queiroga, H.; Cancio, I.; Welch, J. J.; Viard, F.; Bierne, N.
10.1101/590737 — evolutionary biology — Posted on 2019-07-28
466 Serine-arginine protein kinase 1 regulates Ebola virus transcription
Takamatsu, Y.; Kraehling, V.; Kolesnikova, L.; Halwe, S.; Lier, C.; Baumeister, S.; Noda, T.; Biedenkopf, N.; Becker, S.
10.1101/717371 — microbiology — Posted on 2019-07-28
467 High Resolution Imaging Mass Spectrometry of Bacterial Microcolonies at Ecological Scales
Pessotti, R. d. C.; Hansen, B. L.; Zacharia, V. M.; Polyakov, D.; Traxler, M. F.
10.1101/717066 — microbiology — Posted on 2019-07-28
470 High resolution structure of a partially folded insulin aggregation intermediate
Ratha, B. N.; Kar, R. K.; Brender, J. R.; Sahoo, B.; Kalita, S.; Bhunia, A.
10.1101/716845 — biophysics — Posted on 2019-07-28
472 Cortical encoding of melodic expectations in human temporal cortex
Di Liberto, G. M.; Pelofi, C.; Bianco, R.; Patel, P.; Mehta, A.; Herrero, J.; de Cheveigne, A.; Shamma, S.; Mesgarani, N.
10.1101/714634 — neuroscience — Posted on 2019-07-28
474 Genomic properties of structural variants and short tandem repeats that impact gene expression and complex traits in humans
Jakubosky, D.; D'Antonio, M.; Bonder, M. J.; Smail, C.; Donovan, M. K. R.; Young Greenwald, W. W.; D'Antonio-Chronowska, A.; Matsui, H.; i2QTL Consortium, ; Stegle, O.; Smith, E. N.; Montgomery, S. B.; DeBoever, C.; Frazer, K. A.
10.1101/714477 — genomics — Posted on 2019-07-28
475 Biofilm Associated Genotypes of Multidrug-Resistant Pseudomonas aeruginosa
Redfern, J.; Wallace, J.; van Belkum, A.; Jaillard, M.; Whittard, E.; Ragupathy, R.; Verran, J.; Kelly, P.; Enright, M. C.
10.1101/713453 — genomics — Posted on 2019-07-28
478 Photoswitchable microtubule inhibitors enabling robust, GFP-orthogonal optical control over the tubulin cytoskeleton
Gao, L.; Kraus, Y.; Wranik, M.; Weinert, T.; Pritzl, S. D.; Meiring, J. C. M.; Bingham, R.; Olieric, N.; Akhmanova, A.; Lohmüller, T.; Steinmetz, M. O.; Thorn-Seshold, O.
10.1101/716233 — cell biology — Posted on 2019-07-28
479 Phenotypic and functional characterization of corneal endothelial cells during in vitro expansion
Frausto, R. F.; Swamy, V. S.; Peh, G. S.; Boere, P. M.; Hanser, E. M.; Chung, D. D.; Morselli, M.; Kao, L.; Azimov, R.; Pellegrini, M.; Kurtz, I.; Mehta, J. S.; Aldave, A. J.
10.1101/717405 — cell biology — Posted on 2019-07-28
480 Functional significance and therapeutic potential of miR-15a mimic in pancreatic ductal adenocarcinoma
Guo, S.; Fesler, A.; Huang, W.; Wang, Y.; Yang, J.; Wang, X.; Zheng, Y.; Hwang, G.-R.; Wang, H.; Ju, J.
10.1101/716738 — cancer biology — Posted on 2019-07-28
486 Ionpair-π interactions favor cell penetration of arginine/tryptophan-rich cell-penetrating peptides
Walrant, A.; Bauza, A.; Girardet, C.; Alves, I. D.; Lecomte, S.; Illien, F.; Cardon, S.; Chaianantakul, N.; Pallerla, M.; Burlina, F.; Frontera, A.; Sagan, S.
10.1101/717207 — biochemistry — Posted on 2019-07-28
487 Early identification of dengue virus lineage replacement in Brazil using portable genomic surveillance
De Jesus, J. G.; Dutra, K. R.; Sales, F. C. d. S.; Claro, I. M.; Terzian, A. C.; Candido, D. d. S.; Hill, S. C.; Theze, J.; DAgostini, T. L.; Torres, M. C.; Felix, A. C.; Reis, A. F. N.; Alcantara, L. C. J.; Abreu, A. L. d.; Croda, J. H. R.; de Oliveira, W. K.; de Filipis, A. M. B.; Camis, M. d. C. R. d. S.; Romano, C. M.; Loman, N. J.; Pybus, O. G.; Sabino, E. C.; Nogueira, M. L.; Faria, N. R.
10.1101/716159 — genomics — Posted on 2019-07-28
490 Hyperdiverse archaea near life limits at the polyextreme geothermal Dallol area
Belilla, J.; Moreira, D.; Jardillier, L.; Reboul, G.; Benzerara, K.; Lopez-Garcia, J. M.; Bertolino, P.; Lopez-Archilla, A. I.; Lopez-Garcia, P.
10.1101/658211 — microbiology — Posted on 2019-07-28
491 Replication Timing and Transcription Identifies a Novel Fragility Signature Under Replication Stress
Sarni, D.; Sasaki, T.; Miron, K.; Irony Tur-Sinai, M.; Rivera-Mulia, J. C.; Magnuson, B.; Lungman, M.; Gilbert, D. M.; Kerem, B.
10.1101/716951 — genetics — Posted on 2019-07-28
492 Evolutionary Dynamics of CAR T Cell Therapy
Kimmel, G. J.; Locke, F. L.; Altrock, P. M.
10.1101/717074 — cancer biology — Posted on 2019-07-28
493 A temporal record of the past with a spectrum of time constants in the monkey entorhinal cortex
Bright, I. M.; Meister, M. L. R.; Cruzado, N. A.; Tiganj, Z.; Howard, M. W.; Buffalo, E. A.
10.1101/688341 — neuroscience — Posted on 2019-07-27
495 The melanoma microenvironment dissected through high throughput multiplexing: functional meaning of brisk/non brisk patterns and regression.
Bosisio, F. M.; Antoranz, A.; Bolognesi, M. M.; Marcelis, L.; Chinello, C.; Wouters, J.; Magni, F.; Alexopoulos, L.; Cattoretti, G.; van den Oord, J.
10.1101/409011 — cancer biology — Posted on 2019-07-27
496 Testing for Dependence on Tree Structures
Behr, M.; Ansari, M. A.; Munk, A.; Holmes, C.
10.1101/622811 — bioinformatics — Posted on 2019-07-27
497 Replication Timing and Transcription Identifies a Novel Fragility Signature Under Replication Stress
Sarni, D.; Sasaki, T.; Miron, K.; Irony Tur-Sinai, M.; Rivera-Mulia, J. C.; Magnuson, B.; Lungman, M.; Gilbert, D. M.; Kerem, B.
10.1101/716951 — genetics — Posted on 2019-07-27
500 Rapid pacing by circulating traveling waves improves maturation of hiPSC-derived cardiomyocytes in self-organized tissue ring
Li, J.; Zhang, L.; Yu, L.; Minami, I.; Horning, M.; Dong, J.; Qiao, J.; Fujimoto, N.; Shiba, Y.; Zhao, Y.; Tang, F.; Miyagawa, S.; Chen, Y.; Sawa, Y.; Tang, C.; Liu, L.
10.1101/717108 — bioengineering — Posted on 2019-07-27
501 Non-nutritive sweetener consumption during pregnancy affects adiposity in mouse and human offspring
Azad, M. B.; Archibald, A.; Tomczyk, M. M.; Head, A.; Cheung, K. G.; de Souza, R. J.; Becker, A. B.; Mandhane, P. J.; Turvey, S. E.; Moraes, T. J.; Sears, M. R.; Subbarao, P.; Dolinsky, V. W.
10.1101/713974 — developmental biology — Posted on 2019-07-27
502 Molecular and genetic regulation of pig pancreatic islet cell development
Kim, S.; Whitener, R. L.; Peiris, H.; Gu, X.; Chang, C. A.; Lam, J. Y.; Camunas-Soler, J.; Park, I.; Bevacqua, R.; Tellez, K.; Quake, S. R.; Lakey, J. R. T.; Bottino, R.; Ross, P. J.; Kim, S. K.
10.1101/717090 — developmental biology — Posted on 2019-07-27
503 A water-soluble, synthetic auxin analog for rapid degradation of target proteins during C. elegans development
Martinez, M. A.; Kinney, B. A.; Ashley, G.; Ragle, J. M.; Hammell, C. M.; Ward, J. D.; Matus, D. Q.
10.1101/716837 — developmental biology — Posted on 2019-07-27
508 State and trait characteristics of anterior insula time-varying functional connectivity
Pasquini, L.; Toller, G.; Staffaroni, A.; Brown, J. A.; Deng, J.; Lee, A.; Kurcyus, K.; Shdo, S. M.; Allen, I.; Sturm, V. E.; Cobigo, Y.; Borghesani, V.; Battistella, G.; Gorno-Tempini, M. L.; Rankin, K. P.; Kramer, J.; Rosen, H. H.; Miller, B. L.; Seeley, W. W.
10.1101/716720 — neuroscience — Posted on 2019-07-27
510 Rapid cortical plasticity induced by active learning of novel words in human adults
Razorenova, A. M.; Chernyshev, B. V.; Nikolaeva, A. Y.; Butorina, A. V.; Prokofyev, A. O.; Tyulenev, N. B.; Stroganova, T. A.
10.1101/716712 — neuroscience — Posted on 2019-07-27
513 Uncoupling sodium channel dimers rescues phenotype of pain-linked Nav1.7 mutation
Ruehlmann, A.; Koerner, J.; Bebrivenski, N.; Detro-Dassen, S.; Hautvast, P.; Benasolo, C. A.; Meents, J.; Machtens, J.-P.; Schmalzing, G.; Lampert, A.
10.1101/716654 — neuroscience — Posted on 2019-07-27
514 Novel truncating mutations in CTNND1 cause a dominant craniofacial and cardiac syndrome
Alharatani, R.; Vervari, A.; Beleza-Meireles, A.; Ji, W.; Mis, E.; Patterson, Q.; Griffin, J.; Bhujel, N.; Chang, C.; Dixit, A.; Konstantino, M.; Healy, C.; Hannan, S.; Neo, N.; Cash, A.; Li, D.; Bhoj, E.; Zackai, E.; Cleaver, R.; Baralle, D.; McEntagart, M.; Newbury-Ecob, R.; Scott, R.; Hurst, J.; Au, P. Y. B.; Hosey, M. T.; Marciano, D.; Khokha, M.; Lakhani, S.; Liu, K.
10.1101/711184 — genetics — Posted on 2019-07-27
516 LRRK2 regulates innate immune responses and neuroinflammation during Mycobacterium tuberculosis infection
Weindel, C. G.; Bell, S. L.; Huntington, T. E.; Vail, K. J.; Srinivasan, R.; Patrick, K. L.; Watson, R. O.
10.1101/699066 — immunology — Posted on 2019-07-26
521 Modular and efficient pre-processing of single-cell RNA-seq
Melsted, P.; Booeshaghi, A. S.; Gao, F.; da Veiga Beltrame, E.; Lu, L.; Hjorleifsson, K. E.; Gehring, J.; Pachter, L.
10.1101/673285 — bioinformatics — Posted on 2019-07-26
522 Metabolic pathway rerouting in Paraburkholderia rhizoxinica evolved long-overlooked derivatives of coenzyme F420
Braga, D.; Last, D.; Hasan, M.; Guo, H.; Leichnitz, D.; Uzum, Z.; Richter, I.; Schalk, F.; Beemelmanns, C.; Hertweck, C.; Lackner, G.
10.1101/670455 — biochemistry — Posted on 2019-07-26
525 Electrocorticographic dissociation of alpha and beta rhythmic activity in the human sensorimotor system
Stolk, A.; Brinkman, L.; Vansteensel, M. J.; Aarnoutse, E.; Leijten, F. S. S.; Dijkerman, C. H.; Knight, R. T.; de Lange, F. P.; Toni, I.
10.1101/636241 — neuroscience — Posted on 2019-07-26
526 The single-progenitor model as the unifying paradigm of squamous epithelial maintenance
Piedrafita, G.; Kostiou, V.; Wabik, A.; Colom, B.; Fernandez-Antoran, D.; Herms, A.; Murai, K.; Hall, B. A.; Jones, P. H.
10.1101/716639 — cell biology — Posted on 2019-07-26
528 Extracellular adenosine enhances the ability of PMNs to kill Streptococcus pneumoniae by inhibiting IL-10 production
Siwapornchai, N.; Lee, J. N.; Tchalla, E. Y. I.; Bhalla, M.; Hui Yeoh, J.; Leong, J. M.; Bou Ghanem, E. N.
10.1101/716456 — immunology — Posted on 2019-07-26
531 Anisotropic ESCRT-III architecture governs helical membrane tube formation
Moser von Filseck, J.; Barberi, L.; Talledge, N.; Johnson, I.; Frost, A.; Lenz, M.; Roux, A.
10.1101/716308 — biochemistry — Posted on 2019-07-26
533 Leveraging biobank-scale rare and common variant analyses to identify ASPHD1 as the main driver of reproductive traits in the 16p11.2 locus
Männik, K.; Arbogast, T.; Lepamets, M.; Lepik, K.; Pellaz, A.; Ademi, H.; Kupchinsky, Z. A.; Ellegood, J.; Attanasio, C.; Messina, A.; Rotman, S.; Martin-Brevet, S.; Dubruc, E.; Chrast, J.; Lerch, J. P.; Qiu, L. R.; Laisk, T.; The 16p11.2 European Consortium, ; The Simons VIP Consortium, ; The eQTLGen Consortium, ; Henkelman, M. R.; Jacquemont, S.; Herault, Y.; Lindgren, C. M.; Peterson, H.; Stehle, J. C.; Katsanis, N.; Kutalik, Z.; Nef, S.; Draganski, B.; Davis, E. E.; Mägi, R.; Reymond, A.
10.1101/716415 — genomics — Posted on 2019-07-26
534 Meta-analysis of longitudinal epigenome-wide association studies of military cohorts reveals multiple CpG sites associated with post-traumatic stress disorder
Snijders, C.; Maihofer, A. X.; Ratanatharathorn, A.; Baker, D. G.; Boks, M. P.; Geuze, E.; Jain, S.; Kessler, R. C.; Pishva, E.; Risbrough, V. B.; Stein, M. B.; Ursano, R. J.; Vermetten, E.; Vinkers, C.; PGC PTSD EWAS Consortium, ; Smith, A. K.; Uddin, M.; Rutten, B. P. F.; Nievergelt, C. M.
10.1101/716068 — genetics — Posted on 2019-07-26
536 AtDAT1 is a key enzyme of D-amino acid stimulated ethylene production in Arabidopsis thaliana
Suarez, J.; Hener, C.; Lehnhardt, V.-A.; Hummel, S.; Stahl, M.; Kolukisaoglu, U.
10.1101/716373 — plant biology — Posted on 2019-07-26
537 Shaky Scaffolding: Age Differences In Cerebellar Activation Revealed Through Activation Likelihood Estimation Meta-Analysis
Bernard, J.; Nguyen, A. D.; Hausman, H. K.; Maldonado, T.; Ballard, H. K.; Eakin, S. M.; Lokshina, Y.; Goen, J. R. M.
10.1101/716530 — neuroscience — Posted on 2019-07-26
539 Mass Spectrometry-based Plasma Proteomics: Considerations from Sample Collection to Achieving Translatable Data
Ignjatovic, V.; Geyer, P. E.; Palaniappan, K.; Chaaban, J. E.; Omenn, G. S.; Baker, M.; Deutsch, E.; Schwenk, J.
10.1101/716563 — molecular biology — Posted on 2019-07-26
540 Specialization of the Drosophila nuclear export family protein, Nxf3, for piRNA precursor export
Kneuss, E.; Munafo, M.; Eastwood, E. L.; Deumer, U.-S.; Preall, J. B.; Hannon, G. J.; Czech, B.
10.1101/716258 — molecular biology — Posted on 2019-07-26
542 Multiplexed Single Ion Mass Spectrometry Improves Measurement of Proteoforms and Their Complexes
Kafader, J. O.; Melani, R. D.; Durbin, K. R.; Ikwuagwu, B.; Early, B. P.; Fellers, R. T.; Beu, S. C.; Zabrouskov, V.; Makarov, A. A.; Maze, J. T.; Shinholt, D. L.; Yip, P. F.; Tullman-Ereck, D.; Senko, M. W.; Compton, P. D.; Kelleher, N. L.
10.1101/715425 — biochemistry — Posted on 2019-07-26
548 Robust generation of erythroid and multilineage hematopoietic progenitors from human iPSCs using a scalable monolayer culture system
Ruiz Villalobos, J. P.; Chen, G.; Haro Mora, J. J.; Keyvanfar, K.; Liu, C.; Zou, J.; Beers, J.; Bloomer, H.; Qanash, H.; Uchida, N.; Tisdale, J. F.; Boehm, M.; Larochelle, A.
10.1101/711267 — developmental biology — Posted on 2019-07-26
549 The 20S proteasome activator PA28γ controls the compaction of HP1β-linked heterochromatin
Fesquet, D.; Lleres, D.; Vigano, C.; Mechali, F.; Boulon, S.; Feil, R.; Coux, O.; Bonne-Andrea, C.; Baldin, V.
10.1101/716332 — cell biology — Posted on 2019-07-26
550 The Embodied Nature of Well-Timed Behavior
Safaie, M.; Jurado-Parras, M.-T.; Sarno, S.; Louis, J.; Karoutchi, C.; Petit, L. F.; Pasquet, M. O.; Eloy, C.; Robbe, D.
10.1101/716274 — animal behavior and cognition — Posted on 2019-07-26
551 Data-driven integration of hippocampal CA1 synapse physiology in silico
Ecker, A.; Romani, A.; Saray, S.; Kali, S.; Migliore, M.; Mercer, A.; Markram, H.; Muller, E.; Ramaswamy, S.
10.1101/716480 — neuroscience — Posted on 2019-07-26
563 Meiosis Initiates In The Fetal Ovary Of Mice Lacking All Retinoic Acid Receptor Isotypes
Vernet, N.; Mark, M.; Condrea, D.; Feret, B.; Klopfenstein, M.; Alunni, V.; Teletin, M.; Ghyselinck, N.
10.1101/716498 — developmental biology — Posted on 2019-07-26
564 Targeting dormant ovarian cancer cells in vitro and in an in vivo model of platinum resistance
Huang, Z.; Kondoh, E.; Visco, Z.; Baba, T.; Matsumura, N.; Dolan, E.; Whitaker, R. S.; Konishi, I.; Fujii, S.; Berchuck, A.; Murphy, S. K.
10.1101/716464 — cancer biology — Posted on 2019-07-26
565 Biological Plasticity Rescues Target Activity in CRISPR Knockouts
Smits, A. H.; Ziebell, F.; Joberty, G.; Zinn, N.; Mueller, W. F.; Clauder-Münster, S.; Eberhard, D.; Fälth Savitski, M.; Grandi, P.; Jakob, P.; Michon, A.-M.; Sun, H.; Tessmer, K.; Bürckstümmer, T.; Bantscheff, M.; Steinmetz, L. M.; Drewes, G.; Huber, W.
10.1101/716019 — bioengineering — Posted on 2019-07-26
568 Congenital Zika Syndrome is associated with maternal genetic background
Azamor, T.; Cunha, D. P.; da Silva, A. M. V.; Bezerra, O. C. d. L.; Ribeiro-Alves, M.; Calvo, T. L.; Kehdy, F. d. S. G.; Manta, F. S. d. N.; Pinto, T. G.; Ferreira, L. P.; Portari, E. A.; Guida, L. d. C.; Gomes, L.; Moreira, M. E. L.; de Carvalho, E. F.; Cardoso, C. C.; Muller, M.; Neves, P. C. d. C.; Vasconcelos, Z.; Moraes, M. O.
10.1101/715862 — genetics — Posted on 2019-07-26
569 Endocytic Clathrin Coats Develop Curvature at Early Stages of Their Formation
Willy, N.; Ferguson, J.; Silahli, S.; Cakez, C.; Hasan, F.; Chang, H.; Travesset, A.; Li, S.; Zandi, R.; Li, D.; Betzig, E.; Cocucci, E.; Kural, C.
10.1101/715219 — biophysics — Posted on 2019-07-26
572 Determinants of high residual post-PCV13 pneumococcal vaccine type carriage in Blantyre, Malawi: a modelling study.
Lourenco, J.; Obolski, U.; Swarthout, T. D.; Gori, A.; Bar-Zeev, N.; Everett, D.; Kamng'ona, A. W.; Mwalukomo, T. S.; Mataya, A. A.; Mwansambo, C.; Banda, M.; Gupta, S.; French, N.; Heyderman, R. S.
10.1101/477695 — epidemiology — Posted on 2019-07-26
575 FLASHDeconv: Ultrafast, high-quality feature deconvolution for top-down proteomics
Jeong, K.; Kim, J.; Gaikwad, M.; Hidayah, S. N.; Heikaus, L.; Schlueter, H.; Kohlbacher, O.
10.1101/714915 — bioinformatics — Posted on 2019-07-26
581 Widespread remodelling of proteome solubility in response to different protein homeostasis stresses
Sui, X.; Pires, D. E. V.; Nie, S.; Vecchi, G.; Vendruscolo, M.; Ascher, D. B.; Reid, G. E.; Hatters, D. M.
10.1101/692103 — biochemistry — Posted on 2019-07-26
582 Immune Landscapes Predict Chemotherapy Resistance And Immunotherapy Response In Acute Myeloid Leukemia
Vadakekolathu, J.; Minden, M. D.; Hood, T.; Church, S. E.; Reeder, S.; Altmann, H.; Sullivan, A. H.; Viboch, E. J.; Patel, T.; Ibrahimova, N.; Warren, S. E.; Arruda, A.; Liang, Y.; Muth, J.; Schmitz, M.; Cesano, A.; Pockley, A. G.; Valk, P. J.; Lowenberg, B.; Bornhauser, M.; Tasian, S. K.; Rettig, M. P.; Davidson-Moncada, J. K.; DiPersio, J. F.; Rutella, S.
10.1101/702001 — immunology — Posted on 2019-07-26
583 Mitochondria branch within Alphaproteobacteria
Fan, L.; Wu, D.; Goremykin, V.; Xiao, J.; Xu, Y.; Garg, S.; Zhang, C.; Martin, W. F.; Zhu, R.
10.1101/715870 — evolutionary biology — Posted on 2019-07-26
585 Automating three-dimensional osteoarthritis histopathological grading of human osteochondral tissue using machine learning on contrast-enhanced micro-computed tomography
Rytky, S. J. O.; Tiulpin, A.; Frondelius, T.; Finnilä, M. A. J.; Karhula, S. S.; Leino, J.; Pritzker, K. P. H.; Valkealahti, M.; Lehenkari, P.; Joukainen, A.; Kröger, H.; Nieminen, H. J.; Saarakkala, S.
10.1101/713800 — bioengineering — Posted on 2019-07-26
587 Evaluation of five cell-free DNA isolation kits for plasma
Liu, Z.; Yang, X.; Chen, H.; Zhu, S.; Zeng, J.; Chen, F.; Wang, W.-J.
10.1101/715821 — molecular biology — Posted on 2019-07-26
589 Alteration of cardiolipin-dependent mitochondrial coupling in muscle protects against obesity
Prola, A.; Blondelle, J.; Ratnam-Vandestienne, A.; Piquereau, J.; Denis, R.; Guyot, S.; Chauvin, H.; Mourier, A.; Letheule, M.; Maurer, M.; Henry, C.; Khadhraoui, N.; Courtin, G.; Blanchard-Gutton, N.; Guillaud, L.; Barthelemy, I.; Gressette, M.; Solgadi, A.; Dumont, F.; Castel, J.; Ternacle, J.; Demarquoy, J.; Malgoyre, A.; Koulmann, N.; Derumeaux, G.; Giraud, M.-F.; Blot, S.; Joubert, F.; Veksler, V.; Luquet, S.; Relaix, F.; Tiret, L.; Pilot-Storck, F.
10.1101/715953 — cell biology — Posted on 2019-07-26
592 Brain-age in midlife is associated with accelerated biological aging and cognitive decline in a longitudinal birth-cohort
Elliott, M. L.; Belsky, D. W.; Knodt, A. R.; Ireland, D.; Melzer, T. R.; Poulton, R.; Ramrakha, S.; Caspi, A.; Moffitt, T. E.; Hariri, A. R.
10.1101/712851 — neuroscience — Posted on 2019-07-26
594 Efficient de novo assembly of eleven human genomes using PromethION sequencing and a novel nanopore toolkit
Shafin, K.; Pesout, T.; Lorig-Roach, R.; Haukness, M.; Olsen, H. E.; Bosworth, C.; Armstrong, J.; Tigyi, K.; Maurer, N.; Koren, S.; Sedlazeck, F. J.; Marschall, T.; Mayes, S.; Costa, V.; Zook, J. M.; Liu, K. J.; Kilburn, D.; Sorensen, M.; Munson, K. M.; Vollger, M. R.; Eichler, E. E.; Salama, S.; Haussler, D.; Green, R. E.; Akeson, M.; Phillippy, A.; Miga, K. H.; Carnevali, P.; Jain, M.; Paten, B.
10.1101/715722 — bioinformatics — Posted on 2019-07-26
595 A reconstituted mammalian APC-kinesin complex selectively transports defined packages of axonal mRNAs
Baumann, S.; Komissarov, A.; Gili, M. L.; Ruprecht, V.; Wieser, S.; Maurer, S. P.
10.1101/701250 — biochemistry — Posted on 2019-07-26
598 Single-cell gene regulatory network analysis reveals new melanoma cell states and transition trajectories during phenotype switching
Wouters, J.; Kalender Atak, Z.; Minnoye, L.; Spanier, K.; De Waegeneer, M.; Bravo Gonzalez-Blas, C.; Mauduit, D.; Davie, K.; Hulselmans, G.; Najem, A.; Dewaele, M.; Rambow, F.; Makhzami, S.; Christiaens, V.; Ghanem, G.; Marine, J.-C.; Aerts, S.
10.1101/715995 — genomics — Posted on 2019-07-26
600 Extending site-based observations to predict the spatial patterns of vegetation structure and composition
McNellie, M. J.; Oliver, I.; Ferrier, S.; Newell, G.; Manion, G.; Griffioen, P.; White, M.; Koen, T.; Somerville, M.; Gibbons, P.
10.1101/715797 — ecology — Posted on 2019-07-26
601 Bayesian Correlation is a robust similarity measure for single cell RNA-seq data
Sanchez-Taltavull, D.; Perkins, T. J.; Dommann, N.; Melin, N.; Keogh, A.; Candinas, D.; Stroka, D.; Beldi, G.
10.1101/714824 — bioinformatics — Posted on 2019-07-26
602 Blood-spinal cord barrier leakage is not caused by neurodegeneration in amyotrophic lateral sclerosis
Waters, S.; Dieriks, B. V.; Swanson, M. E.; Zhang, Y.; Grimsey, N. L.; Murray, H. C.; Turner, C.; Waldvogel, H. J.; Faull, R. L.; An, J.; Bowser, R.; Curtis, M. A.; Dragunow, M.; Scotter, E. L.
10.1101/704270 — neuroscience — Posted on 2019-07-26
603 Stimulus-modality independent activation of the brain network for language
Arana, S. L.; Marquand, A. F.; Hulten, A.; Hagoort, P.; Schoffelen, J. M.
10.1101/714998 — neuroscience — Posted on 2019-07-26
604 A Cre-amplifier to generate and detect genetic mosaics in vivo
Trovato, F.; Parra, R.; Pracucci, E.; Landi, S.; Cozzolino, O.; Nardi, G.; Cruciani, F.; Mosti, L.; Cwetsch, A. W.; Cancedda, L.; Gritti, L.; Sala, C.; Verpelli, C.; Maset, A.; Lodovichi, C.; Ratto, G. M.
10.1101/715490 — neuroscience — Posted on 2019-07-26
607 Better tired than lost: turtle ant trail networks favor coherence over shortest paths
Chandrasekhar, A.; Marshall, J. A. R.; Austin, C.; Navlakha, S.; Gordon, D. M.
10.1101/714410 — ecology — Posted on 2019-07-26
609 On the discovery of population-specific state transitions from multi-sample multi-condition single-cell RNA sequencing data
Crowell, H. L.; Soneson, C.; Germain, P.-L.; Calini, D.; Collin, L.; Raposo, C.; Malhotra, D.; Robinson, M.
10.1101/713412 — bioinformatics — Posted on 2019-07-26
610 Generation and quality control of maternal plasma lipidomics data associated with preterm birth
Mei, Z.; Ye, L.; Huang, K.; Yang, X.; Chen, X.; Cen, M.; Chen, Y.; Zhu, S.; Zeng, J.; Roy, B.; Jiang, H.; Wang, W.-J.
10.1101/714790 — systems biology — Posted on 2019-07-26
612 Resolvin D3 controls mouse and human nociceptive functions and preclinical progression of psoriasis
Lee, S. H.; Tonello, R.; Im, S.-T.; Jeon, H.; Park, J.; Ford, Z.; Davidson, S.; Kim, Y. H.; Park, C.-K.; Berta, T.
10.1101/715169 — neuroscience — Posted on 2019-07-26
616 Assessment of a loop-mediated isothermal amplification (LAMP) assay for the rapid detection of pathogenic bacteria from respiratory samples in patients with hospital-acquired pneumonia
VERGARA, A.; BOUTAL, H.; Ceccato, A.; Lopez, M.; Cruells, A.; Bueno Freire, L.; Moreno, J.; Puig de la Bellacasa, J.; Castro, P.; Torres, A.; Marco, F.; Casals-Pascual, C.; Vila, J.
10.1101/714709 — microbiology — Posted on 2019-07-26
618 Howler monkeys are the reservoir of malaria parasites causing zoonotic infections in the Atlantic forest of Rio de Janeiro
Abreu, F. V. S. d.; Santos, E. d.; Mello, A. R. L.; Gomes, L. R.; Alvarenga, D. A. M. d.; Gomes, M. Q.; Vargas, W. P.; Bianco-Junior, C.; Pina-Costa, A. d.; Teixeira, D. S.; Romano, A. P. M.; Manso, P. P. d. A.; Pelajo-Machado, M.; Brasil, P.; Daniel-Ribeiro, C. T.; Britto, C. F. A. d.; Ferreira-da-Cruz, M. d. F.; Lourenco-de-Oliveira, R.
10.1101/715623 — ecology — Posted on 2019-07-26
619 Mitochondrial dysfunction is signaled to the integrated stress response by OMA1, DELE1 and HRI
Guo, X.; Aviles, G.; Liu, Y.; Tian, R.; Unger, B. A.; Lin, Y.-H. T.; Wiita, A. P.; Xu, K.; Correia, M. A.; Kampmann, M.
10.1101/715896 — cell biology — Posted on 2019-07-26
621 The impact of genistein supplementation on tendon functional properties and gene expression in estrogen deficient rats
Carroll, C.; Patel, S. H.; Simmons, J.; Gordon, B. D.; Olson, J. F.; Chemelewski, K.; Saw, S.; Hale, T. M.; Howden, R.; Sabbaghi, A.
10.1101/715102 — physiology — Posted on 2019-07-26
622 Absolute measurement of the tissue origins of cell-free DNA in the healthy state and following paracetamol overdose
Laurent, D.; Semple, F.; Starkey Lewis, P. J.; Rose, E.; Black, H. A.; Forbes, S. J.; Arends, M. J.; Dear, J. W.; Aitman, T. J.
10.1101/715888 — pharmacology and toxicology — Posted on 2019-07-26
623 Regional Differences Following Partial Salivary Gland Resection
O'Keefe, K. J.; DeSantis, K. A.; Altrieth, A. L.; Nelson, D. A.; Taroc, E. Z. M.; Stabell, A. R.; Pham, M. T.; Larsen, M.
10.1101/713230 — pathology — Posted on 2019-07-26
624 Hippocampal subfield volumes in abstinent men and women with a history of alcoholism
Sawyer, K. S.; Salz, D. M.; Adra, N.; Kemppainen, M. I.; Ruiz, S. M.; Harris, G. J.; Oscar-Berman, M.
10.1101/715292 — neuroscience — Posted on 2019-07-26
625 Autobiographical memory reactivation in empathy
Meconi, F.; Linde-Domingo, J.; Ferreira, C. S.; Michelmann, S.; Staresina, B.; Apperly, I. I.; Hanslmayr, S.
10.1101/715276 — neuroscience — Posted on 2019-07-26
628 Less is more: Coarse-grained integrative modeling of large biomolecular assemblies with HADDOCK
Roel-Touris, J.; G. Don, C.; V. Honorato, R.; Rodrigues, J. P. G. L. M.; Bonvin, A. M. J. J.
10.1101/715268 — bioinformatics — Posted on 2019-07-26
629 Pan-cancer classifications of tumor histological images using deep learning
Noorbakhsh, J.; Farahmand, S.; Soltanieh-ha, M.; Namburi, S.; Zarringhalam, K.; Chuang, J. H.
10.1101/715656 — bioinformatics — Posted on 2019-07-26
630 Contextual Classifications of Cancer Driver Genes
Chandrashekar, P.; Ahmadinejad, N.; Wang, J.; Sekulic, A.; Egan, J. B.; Asmann, Y. W.; Mayley, C.; Liu, L.
10.1101/715508 — bioinformatics — Posted on 2019-07-26
636 What threatens Brazilian endangered species and how they are Red-Listed
Bernard, E.; Barros, F. S.; Felix, V. E. F.; Lacher, T. E.
10.1101/711242 — ecology — Posted on 2019-07-26
639 Platelet disturbances correlate with endothelial cell activation in uncomplicated Plasmodium vivax malaria
Dos-Santos, J. C. K.; Silva-Filho, J. L.; Judice, C. C.; Kayano, A. C. A. V.; Aliberti, J.; Khouri, R.; De Lima, D. S.; Nakaya, H.; Lacerda, M. V. G.; De Paula, E. V.; Lopes, S. C. P.; Costa, F. T. M.
10.1101/715003 — immunology — Posted on 2019-07-26
640 Glucuronoxylomannan in the Cryptococcus species capsule as a target for CAR+ T-cell therapy
da Silva, T. A.; Hauser, P. J.; Bandey, I.; Laskowski, T.; Wang, Q.; Najjar, A. M.; Kumaresan, P.
10.1101/715045 — immunology — Posted on 2019-07-26
644 GATA2 Expression by Intima-Infiltrating Macrophages Drives Early Atheroma Formation
Yin, C.; Vreize, A. M.; Akingbasote, J.; Pawlak, E. N.; Jacob, R. A.; Hu, J.; Sharma, N.; Dikeakos, J. D.; Barra, L.; Nagpal, A. D.; Heit, B.
10.1101/715565 — immunology — Posted on 2019-07-26
645 High-throughput identification of MHC class I binding peptides using an ultradense peptide array
Haj, A. K.; Breitbach, M. E.; Baker, D. A.; Mohns, M. S.; Moreno, G. K.; Wilson, N. A.; Lyamichev, V.; Patel, J.; Weisgrau, K. L.; Dudley, D. M.; O'Connor, D. H.
10.1101/715342 — immunology — Posted on 2019-07-26
646 An alternative nisin A resistance mechanism affects virulence in Staphylococcus aureus
Komatsuzawa, H.; Kawada-Matsuo, M.; Watanabe, A.; Arii, K.; Oogai, Y.; Noguchi, K.; Miyawaki, S.; Hayashi, T.
10.1101/716191 — microbiology — Posted on 2019-07-26
651 Single-cell in vivo imaging reveals light-initiated circadian oscillators in zebrafish
Wang, H.; Yang, Z.; Li, X.; Huang, D.; Yu, S.; He, j.; Li, Y.; Yan, J.
10.1101/716100 — neuroscience — Posted on 2019-07-26
654 Regulation of neuron-specific gene transcription by stress hormone signalling requires synaptic activity in zebrafish
Eachus, H.; Subramanya, D.; Jackson, H.; Wang, G.; Berntsen, K.; Ashton, J.-P.; Esposito, U.; Seifuddin, F.; Pirooznia, M.; Elhaik, E.; Krone, N.; Baines, R. A.; Placzek, M.; Cunliffe, V. T.
10.1101/714873 — developmental biology — Posted on 2019-07-25
655 An actin nucleation complex catalyzes filament formation at sites of exocytosis
Glomb, O.; Wu, Y.; Rieger, L.; Ruethnick, D.; Mulaw, M. A.; Johnsson, N.
10.1101/715409 — cell biology — Posted on 2019-07-25
657 A ciliary BBSome-ARL-6-PDE6D pathway trafficks RAB-28, a negative regulator of extracellular vesicle biogenesis
Akella, J. S.; Carter, S. P.; Rizvi, F.; Nguyen, K. C. Q.; Tsiropoulou, S.; Moran, A. L.; Silva, M.; Kennedy, B. N.; Hall, D. H.; Barr, M. M.; Blacque, O. E.
10.1101/715730 — cell biology — Posted on 2019-07-25
660 Skeletal geometry and niche transitions restore organ size and shape during zebrafish fin regeneration
Stewart, S.; Yette, G. A.; Le Bleu, H. K.; Henner, A. L.; Braunstein, J. A.; Chehab, J. W.; Harms, M. J.; Stankunas, K.
10.1101/606970 — developmental biology — Posted on 2019-07-25
662 JASS: Command Line and Web interface for the joint analysis of GWAS results
Julienne, H.; Lechat, P.; Guillemot, V.; Lasry, C.; Yao, C.; Laville, V.; Vilhjalmsson, B.; Menager, H.; Aschard, H.
10.1101/714832 — bioinformatics — Posted on 2019-07-25
665 Tissue of Origin Dictates GOT1 Dependence and Confers Synthetic Lethality to Radiotherapy
Nelson, B. S.; Lin, L.; Kremer, D. M.; Sousa, C. M.; Cotta-Ramusino, C.; Myers, A.; Ramos, J.; Gao, T.; Kovalenko, I.; Wilder-Romans, K.; Dresser, J.; Davis, M.; Lee, H.-J.; Nwosu, Z. C.; Campit, S.; Mashadova, O.; Nicolay, B. N.; Tolstyka, Z. P.; Halbrook, C. J.; Chandrasekaran, S.; Asara, J. M.; Crawford, H. C.; Cantley, L. C.; Kimmelman, A. C.; Wahl, D. R.; Lyssiotis, C. A.
10.1101/714196 — cancer biology — Posted on 2019-07-25
667 Cortical encoding of melodic expectations in human temporal cortex
Di Liberto, G. M.; Pelofi, C.; Bianco, R.; Patel, P.; Mehta, A.; Herrero, J.; de Cheveigne, A.; Shamma, S.; Mesgarani, N.
10.1101/714634 — neuroscience — Posted on 2019-07-25
670 Enzymatic activity induces transient non-spherical coacervate shapes
Spoelstra, W. K.; van der Sluis, E. O.; Dogterom, M.; Reese, L.
10.1101/714261 — biophysics — Posted on 2019-07-25
672 Drifting codes within a stable coding scheme for working memory
Wolff, M. J.; Jochim, J.; Akyurek, E. G.; Buschman, T. J.; Stokes, M. G.
10.1101/714311 — neuroscience — Posted on 2019-07-25
674 Teichoic acids anchor distinct cell wall lamellae in an apically growing bacterium
Ultee, E.; van der Aart, L. T.; van Dissel, D.; Diebolder, C.; van Wezel, G. P.; Claessen, D.; Briegel, A.
10.1101/714758 — microbiology — Posted on 2019-07-25
675 Retroconversion of estrogens into androgens by bacteria via a cobalamin-mediated methylation
Wang, P.-H.; Chen, Y.-L.; Wei, S. T.-S.; Wu, K.; Lee, T.-H.; Wu, T.-Y.; Chiang, Y.-R.
10.1101/714501 — microbiology — Posted on 2019-07-25
676 TRANSCRIPTION-MEDIATED ORGANIZATION OF THE REPLICATION INITIATION PROGRAM ACROSS LARGE GENES SETS UP COMMON FRAGILE SITES GENOME-WIDE
Brison, O.; EL-Hilali, S.; Azar, D.; Koundrioukoff, S.; Schmidt, M.; Naehse-Kumpf, V.; Jaszczyszyn, Y.; Lachages, A.-M.; Dutrillaux, B.; Thermes, C.; Debatisse, M.; Chen, C.-L.
10.1101/714717 — genomics — Posted on 2019-07-25
677 Discovery and Quality Analysis of a Comprehensive Set of Structural Variants and Short Tandem Repeats
Jakubosky, D.; Smith, E. N.; D'Antonio, M.; Bonder, M. J.; Young Greenwald, W. W.; Matsui, H.; D'Antonio-Chronowska, A.; i2QTL Consortium, ; HipSci Consortium, ; Stegle, O.; Montgomery, S. B.; DeBoever, C.; Frazer, K. A.
10.1101/713198 — genomics — Posted on 2019-07-25
679 Limited intra-host diversity and background evolution accompany 40 years of canine parvovirus host adaptation and spread
Voorhees, I. E. H.; Lee, H.; Allison, A. B.; Lopez-Astacio, R.; Goodman, L. B.; Oyesola, O. O.; Omobowale, O.; Fagbohun, O.; Dubovi, E. J.; Hafenstein, S.; Holmes, E. C.; Parrish, C. R.
10.1101/714683 — evolutionary biology — Posted on 2019-07-25
681 Targeting USP9x/SOX2 axis contributes to the anti-osteosarcoma effect of neogambogic acid
Chen, X.; Zhang, X.; Cai, H.; Yang, W.; Lei, H.; Xu, H.; Wang, W.; Zhu, Q.; Kang, J.; Yin, T.; Gu, W.; Wu, Y.
10.1101/714741 — cancer biology — Posted on 2019-07-25
682 Varying constraints impact the miR-6/5/4/286/3/309 microRNA cluster in Drosophila leg development
Qu, Z.; Yiu, W. C.; Yip, H. Y.; Nong, W.; Yu, C. W. C.; Lee, I. H. T.; Wong, A. Y. P.; Wong, N. W. Y.; Cheung, F. K. M.; Chan, T. F.; Lau, K. F.; Zhong, S.; Chu, K. H.; Tobe, S. S.; Ferrier, D. E. K.; Bendena, W. G.; Hui, J. H. L.
10.1101/714766 — evolutionary biology — Posted on 2019-07-25
684 Serotonergic treatment normalizes midbrain dopaminergic neuron increase after periaqueductal gray stimulation-induced anticipatory fear in a rat model
Tan, S. Z. K.; Temel, Y.; Chan, A. Y.; Mok, A. T. C.; Perucho, J. A. U.; Blokland, A.; Aquili, L.; Lim, W. L.; Lim, L. W.
10.1101/714592 — neuroscience — Posted on 2019-07-25
688 A mini-atlas of gene expression for the domestic goat (Capra hircus) reveals transcriptional differences in immune signatures between sheep and goats
Muriuki, C.; Bush, S. J.; Salavati, M.; McCulloch, M. E.; Lisowski, Z. M.; Agaba, M.; Djikeng, A.; Hume, D. A.; Clark, E. L.
10.1101/711127 — genomics — Posted on 2019-07-25
689 Dietary vs non-dietary fatty acid profiles of lake trout morphs from Lake Superior and Great Bear Lake: Are fish really what they eat?
Chavarie, L.; Hoffmann, J.; Muir, A.; Krueger, C.; Bronte, C.; Howland, K.; Gallagher, C.; Sitar, S.; Hansen, M.; Vinson, M.; Loseto, L.; Tonn, W.; Swanson, H.
10.1101/714352 — ecology — Posted on 2019-07-25
690 Dissection of Catalytic Site in Crucial Gut Microbiome Enzyme: Bile Salt Hydrolase
Yadav, Y.; Tiwari, M. K.; Chand, D.; Boral, D.; Pundle, A.; Ramasamy, S.
10.1101/714493 — biochemistry — Posted on 2019-07-25
691 Improving yield and fruit quality traits in sweet passion fruit: evidence for genotype by environment interaction and cross-compatibility in selected genotypes
Chavarria-Perez, L. M.; Giordani, W.; Dias, K. O. G.; Costa, Z. P.; Ribeiro, C. A. M.; Benedetti, A. R.; Cauz-Santos, L. A.; Pereira, G. S.; Rosa, J. R. B. F.; Garcia, A. A. F.; Vieira, M. L. C.
10.1101/714162 — plant biology — Posted on 2019-07-25
693 Plasma Membrane Calcium Atpase downregulation in dopaminergic neurons alters cellular physiology and behavior in Drosophila melanogaster
Erhardt, B.; Leal, M. C.; Marcora, M. S.; Frenkel, L.; Bochicchio, P. A.; Bodin, D. H.; Silva, B. A.; Farias, M. I.; Ferrari, C. C.; Allo, M. A.; Hocht, C.; Castano, E. M.; Pitossi, F. J.
10.1101/714147 — neuroscience — Posted on 2019-07-25
694 How to make “number lines” stable in the mind’s eye
Pinto, M.; Pellegrino, M.; Marson, F.; Lasaponara, S.; Doricchi, F.
10.1101/714659 — neuroscience — Posted on 2019-07-25
696 Recommendations for application of the functional evidence PS3/BS3 criterion using the ACMG/AMP sequence variant interpretation framework
Brnich, S. E.; Abou Tayoun, A. N.; Couch, F. J.; Cutting, G.; Greenblatt, M. S.; Heinen, C. D.; Kanavy, D. M.; Luo, X.; McNulty, S. M.; Starita, L. M.; Tavtigian, S. V.; Wright, M. W.; Harrison, S. M.; Biesecker, L. G.; Berg, J. S.
10.1101/709428 — genetics — Posted on 2019-07-25
698 The consequences of lipid remodelling of adipocyte cell membranes being functionally distinct from global lipid storage during obesity
Liu, K.; Acharjee, A.; Hinz, C.; Liggi, S.; Murgia, A.; Denes, J.; Gulston, M. K.; Wang, X.; Chu, Y.; West, J. A.; Glen, R. C.; Roberts, L. D.; Murray, A. J.; Griffin, J. L.
10.1101/712976 — systems biology — Posted on 2019-07-25
700 Allicin regulates energy homeostasis through brown adipose tissue
Zhang, C.; He, X.; Sheng, Y.; Xu, J.; Yang, C.; Zheng, S.; Liu, J.; Li, H.; Yang, M.; Xu, W.; Luo, Y.; Huang, K.; Ge, J.; Zhai, B.
10.1101/713305 — molecular biology — Posted on 2019-07-25
701 Cholesterol and matrisome pathways dysregulated in human APOE ε4 glia
TCW, J.; Liang, S. A.; Qian, L.; Pipalia, N. H.; Chao, M. J.; Shi, Y.; Bertelsen, S. E.; Kapoor, M.; Marcora, E.; Sikora, E.; Holtzman, D. M.; Maxfield, F. R.; Zhang, B.; Wang, M.; Poon, W. W.; Goate, A. M.
10.1101/713362 — neuroscience — Posted on 2019-07-25
705 Streptococcus pyogenes infects human endometrium by limiting its immune response
Weckel, A.; Guilbert, T.; Lambert, C.; Plainvert, C.; Goffinet, F.; Poyart, C.; Mehats, C.; Fouet, A.
10.1101/713875 — microbiology — Posted on 2019-07-25
707 Pattern-Driven Navigation in 2D Multiscale Visualizations with Scalable Insets
Lekschas, F.; Behrisch, M.; Bach, B.; Kerpedjiev, P.; Gehlenborg, N.; Pfister, H.
10.1101/301036 — bioinformatics — Posted on 2019-07-25
708 Plant respiration: controlled by photosynthesis or biomass?
Collalti, A.; Tjoelker, M.; Hoch, G.; Makela, A.; Guidolotti, G.; Heskel, M.; Petit, G.; Ryan, M.; Matteucci, G.; Battipaglia, G.; Prentice, I. C.
10.1101/705400 — ecology — Posted on 2019-07-25
711 Plant defense resistance in natural enemies of a specialist insect herbivore
Zhang, X.; van Doan, C.; Arce, C. C. M.; Hu, L.; Gruenig, S.; Parisod, C.; Hibbard, B. E.; Herve, M.; Robert, C. A. M.; Machado, R. A. R.; Erb, M.
10.1101/710681 — plant biology — Posted on 2019-07-25
714 Machine Learning for Prioritization of Thermostabilizing Mutations for G-protein Coupled Receptors
Muk, S.; Ghosh, S.; Achuthan, S.; Chen, X.; Yao, X.; Sandhu, M.; Griffor, M. C.; Fennell, K. F.; Che, Y.; Shanmugasundaram, V.; Qiu, X.; Tate, C.; Vaidehi, N.
10.1101/715375 — biophysics — Posted on 2019-07-25
715 Somatic structural variation targets neurodevelopmental genes and identifies SHANK2 as a tumor suppressor in neuroblastoma
Lopez, G.; Conkrite, K. L.; Doepner, M.; Rathi, K. S.; Modi, A.; Vaksman, Z.; Farra, L. M.; Hyson, E.; Noureddine, M.; Wei, J. S.; Smith, M. A.; Asgharzadeh, S.; Seeger, R. C.; Khan, J.; Guidry Auvil, J. M.; Gerhard, D. S.; Maris, J. M.; Diskin, S. J.
10.1101/572248 — genomics — Posted on 2019-07-25
717 Integrative analysis of hexaploid wheat roots identifies signature components during iron starvation
Kaur, G.; Shukla, V.; Kumar, A.; Kaur, M.; Goel, P.; Singh, P.; Shukla, A.; Meena, V.; Kaur, J.; Singh, J.; Mantri, S.; Rouached, H.; Pandey, A. K.
10.1101/539098 — plant biology — Posted on 2019-07-25
720 FLASHDeconv: Ultrafast, high-quality feature deconvolution for top-down proteomics
Jeong, K.; Kim, J.; Gaikwad, M.; Hidayah, S. N.; Heikaus, L.; Schlueter, H.; Kohlbacher, O.
10.1101/714915 — bioinformatics — Posted on 2019-07-25
721 Genetic Identification of Cell Types Underlying Brain Complex Traits Yields Novel Insights Into the Etiology of Parkinson’s Disease
Bryois, J.; Skene, N. G.; Folkmann Hansen, T.; Kogelman, L. J. A.; Watson, H. J.; Eating Disorders Working Group of the Psychiatric, ; International Headache Genetics Consortium, ; The 23andMe Research Team, ; Brueggeman, L.; Breen, G.; Bulik, C. M.; Arenas, E.; Hjerling-Leffler, J.; Sullivan, P. F.
10.1101/528463 — genomics — Posted on 2019-07-25
723 cis dominantly explains regulatory divergence between two indica rice genotypes; drought further enhances regulatory differences
Ereful, N. C.; Liu, L.-y.; Kao, S.-M.; Tsai, E.; Laurena, A.; Thomson, M.; Greenland, A.; Powell, W.; Mackay, I.; Leung, H.
10.1101/714907 — plant biology — Posted on 2019-07-25
724 Pharmacological evidence for the implication of noradrenaline in effort
Borderies, N.; Mattioni, J. C. L.; Bornert, P.; Gilardeau, S.; Bouret, S.
10.1101/714923 — neuroscience — Posted on 2019-07-25
725 SMAD3 Determines Conventional versus Plasmacytoid Dendritic Cell Fates
Yoon, J.-H.; Bae, E.; Sudo, K.; Han, J. S.; Park, S. H.; Nakae, S.; Yamashita, T.; Lee, I.-K.; Ju, J. H.; Matsumoto, I.; Sumida, T.; Kuroda, M.; Miyazawa, K.; Kato, M.; Mamura, M.
10.1101/715060 — immunology — Posted on 2019-07-25
727 Hypoxia induces transcriptional and translational downregulation of the type I interferon (IFN) pathway in multiple cancer cell types
Miar, A.; Arnaiz, E.; Bridges, E.; Beedie, S.; Cribbs, A. P.; Downes, D. J.; Beagrie, R.; Rehwinkel, J.; Harris, A. L.
10.1101/715151 — cancer biology — Posted on 2019-07-25
728 Estrogen deprivation triggers an immunosuppressive phenotype in breast cancer cells
Huhn, D.; Marti-Rodrigo, P.; Mouron, S.; Hansel, C.; Tschapalda, K.; Haggblad, M.; Lidemalm, L.; Quintela-Fandino, M. A.; Carreras-Puigvert, J.; Fernandez-Capetillo, O.
10.1101/715136 — cancer biology — Posted on 2019-07-25
729 The EO771 mammary cancer cell line displays a luminal B phenotype and it is sensitive to anti-estrogen treatments
Le Naour, A.; Koffi, Y.; Diab, M.; Le Guennec, D.; Rouge, S.; Aldekwer, S.; Goncalves-Mendes, N.; Talvas, J.; Farges, M.-C.; Caldefie-Chezet, F.; Vasson, M.-P.; Rossary, A.
10.1101/715201 — cancer biology — Posted on 2019-07-25
731 Evaluating fMRI-Based Estimation of Eye Gaze during Naturalistic Viewing
Son, J.; Ai, L.; Lim, R.; Xu, T.; Colcombe, S.; Franco, A.; Cloud, J.; LaConte, S.; Lisinski, J.; Klein, A.; Craddock, C.; Milham, M.
10.1101/347765 — neuroscience — Posted on 2019-07-25
732 CpG-creating Mutations are Costly in Many Human Viruses
Caudill, V. R.; Qin, S.; Winstead, R.; Kaur, J.; Tisthammer, K.; Pineda, E. G.; Carja, O.; Eggo., R. M.; Koelle, K.; Lythgoe, K.; Roy, S.; Allen, N.; Aviles, M.; Baker, B. A.; Bauer, W.; Bermudez, S.; Carlson, C.; Catalan, F. L.; Chemel, A. K.; Evans, D.; Fiutek, N.; Fryer, E.; Goodfellow, S. M.; Hecht, M.; Hopp, K.; Hopson, E. D.; Jaberi, A.; Kinney, C.; Lao, D.; Le, A.; Lo, J.; Lopez, A. G.; Lopez, A.; Lorenzo, F. G.; Luu, G. T.; Mahoney, A. R.; Melton, R. L.; Nascimento, G. D.; Pradhananga, A.; Rodrigues, N. S.; Shieh, A.; Sims, J.; Singh, R.; Sulaeman, H.; Thu, R.; Tran, K.; Tran, L.; Wint
10.1101/702175 — evolutionary biology — Posted on 2019-07-25
733 Nanog regulates Pou3f1 expression and represses anterior fate at the exit from pluripotency.
Barral, A.; Rollan, I.; Sanchez-Iranzo, H.; Jawaid, W.; Badia-Careaga, C.; Menchero, S.; Gomez-Rodriguez, M.; Torroja, C.; Sanchez-Cabo, F.; Gottgens, B.; Manzanares, M.; Sainz de Aja, J.
10.1101/598656 — developmental biology — Posted on 2019-07-25
735 Pyruvate Kinase M Links Glucose Availability to Protein Synthesis
Kejiou, N. S.; Ilan, L.; Aigner, S.; Luo, E.; Rabano, I.; Rajakulendran, N.; Najafabadi, H. S.; Angers, S.; Yeo, G. W.; Palazzo, A. F.
10.1101/715086 — molecular biology — Posted on 2019-07-25
736 O-linked mucin-type glycosylation regulates the transcriptional programme downstream of EGFR in breast cancer
Tajadura-Ortega, V.; Gambardella, G.; Skinner, A.; Ter-Borch Gram Schjoldager, K.; Beatson, R.; Graham, R.; Achkova, D.; Taylor-Papadimitriou, J.; Ciccarelli, F. D.; Burchell, J.
10.1101/714675 — cancer biology — Posted on 2019-07-25
737 The Kinesin-5 Tail Domain Directly Modulates the Mechanochemical Cycle of the Motor for Anti-Parallel Microtubule Sliding
Bodrug, T.; Wilson-Kubalek, E.; Nithianantham, S.; Thompson, A. F.; Alfieri, A.; Gaska, I.; Major, J.; Debs, G.; Inagaki, S.; Gutierrez, P.; Gheber, L.; McKenney, R.; Sindelar, C.; Milligan, R.; Stumpff, J.; Rosenfeld, S.; Forth, S. T.; Al-Bassam, J.
10.1101/713909 — biophysics — Posted on 2019-07-25
739 Syntrophus Conductive Pili Demonstrate that Common Hydrogen-Donating Syntrophs can have a Direct Electron Transfer Option
Walker, D. J.; Nevin, K. P.; Holmes, D. E.; Rotaru, A.-E.; Ward, J. E.; Woodard, T. L.; Zhu, J.; Ueki, T.; Nonnenmann, S. S.; McInerney, M. J.; Lovley, D. R.
10.1101/479683 — microbiology — Posted on 2019-07-25
740 Towards multi-drug adaptive therapy
West, J.; You, L.; Zhang, J.; Gatenby, R. A.; Brown, J.; Newton, P. K.; Anderson, A. R.
10.1101/476507 — cancer biology — Posted on 2019-07-25
744 Perirhinal input to neocortical layer 1 controls learning
Doron, G.; Shin, J. N.; Takahashi, N.; Bocklisch, C.; Skenderi, S.; Drueke, M.; de Mont, L.; Toumazo, M.; von Heimendahl, M.; Brecht, M.; Naud, R.; Larkum, M. E.
10.1101/713883 — neuroscience — Posted on 2019-07-25
746 Structural variant classes and short tandem repeats differentially impact gene expression and complex traits
Jakubosky, D.; D'Antonio, M.; Bonder, M. J.; Smail, C.; Donovan, M. K. R.; Young Greenwald, W. W.; D'Antonio-Chronowska, A.; Matsui, H.; i2QTL Consortium, ; Stegle, O.; Smith, E. N.; Montgomery, S. B.; DeBoever, C.; Frazer, K. A.
10.1101/714477 — genomics — Posted on 2019-07-25
747 Two-Step Small Scale Purification of Recombinant Adeno-Associated Viruses
Chen, S.-H.; Papaneri, A.; Walker, M.; Scappini, E.; Keys, R.; Martin, N. P.
10.1101/715029 — neuroscience — Posted on 2019-07-25
750 Infection of Borrelia burgdorferi sensu lato of small mammals in Yunnan Province, China
He, Z.-h.; Jiang, B.-g.; Gao, Z.-h.; Shao, Z.-t.; Zhang, Y.; Liu, Z.-x.; Li, Y.-q.; Pu, E.-n.; Tang, L.; Yao, M.-g.; Jia, N.; von Fricken, M. E.; Jiang, J.-f.; Cao, W.-c.; Du, C.-h.
10.1101/714980 — epidemiology — Posted on 2019-07-25
753 TSG-6 in extracellular vesicles from canine mesenchymal stem/stromal is a major factor in relieving DSS-induced colitis
AN, J.-H.; SONG, W.-J.; LI, Q.; RYU, M.-O.; NAM, A.-R.; BHANG, D.-H.; JUNG, Y.-C.; Youn, H.-Y.
10.1101/714931 — cell biology — Posted on 2019-07-25
754 Biofilm Associated Genotypes of Multidrug-Resistant Pseudomonas aeruginosa
Redfern, J.; Wallace, J.; van Belkum, A.; Jaillard, M.; Whittard, E.; Ragupathy, R.; Verran, J.; Kelly, P.; Enright, M. C.
10.1101/713453 — genomics — Posted on 2019-07-25
755 Arbovirus Vectors of Epidemiological Concern in the Americas: A Scoping Review of Entomological Studies on Zika, Dengue and Chikungunya Virus Vectors
Jones, R.; Kulkarni, M. A.; Davidson, T. M. V.; Research Team, R.-L.; Talbot, B.; Beate Sander Camila Gonzalez, Marcos Miretti, Maur,
10.1101/713693 — ecology — Posted on 2019-07-25
757 The mechanosensitive ion channel TRAAK is localized to the mammalian node of Ranvier
Brohawn, S. G.; Wang, W.; Schwarz, J. R.; Handler, A.; Campbell, E. B.; MacKinnon, R.
10.1101/713990 — neuroscience — Posted on 2019-07-25
760 NK cells prevent the formation of teratomas derived from human induced pluripotent stem cells
Benabdallah, B.; Deslauniers-Langevin, C.; Colas, C.; Li, Y.; Guimond, J.; Haddad, E.; Beausejour, C.
10.1101/714170 — cell biology — Posted on 2019-07-25
767 A novel source of variation in IT population response magnitude predicts image memorability
Jaegle, A.; Mehrpour, V.; Mohsenzadeh, Y.; Meyer, T.; Oliva, A.; Rust, N. C.
10.1101/535468 — neuroscience — Posted on 2019-07-24
769 Identification of single nucleotide variants using position-specific error estimation in deep sequencing data
Kleftogiannis, D.; Punta, M.; Jayaram, A.; Sandhu, S.; Wong, S. Q.; Gasi Tandefelt, D.; Conteduca, V.; Wetterskog, D.; Attard, G.; Lise, S.
10.1101/475947 — genomics — Posted on 2019-07-24
770 Hierarchical Network Exploration using Gaussian MixtureModels
Mathews, J.; Nadeem, S.; Pouryahya, M.; Belkhatir, Z.; Deasy, J. O.; Tannenbaum, A.
10.1101/623157 — bioinformatics — Posted on 2019-07-24
771 Long-lasting Analgesia via Targeted in vivo Epigenetic Repression of Nav1.7
Moreno, A. M.; Catroli, G. F.; Aleman, F.; Pla, A.; Woller, S. A.; Hu, M.; Yaksh, T.; Mali, P.
10.1101/711812 — genetics — Posted on 2019-07-24
773 Multicellular tumor spheroids- an effective in vitro model for understanding drug resistance in head and neck cancer
Azharuddin, M.; Roberg, K.; Dhara, A. K.; Jain, M. V.; Darcy, P.; Hinkula, J.; Slater, N. K. H.; Patra, H. K.
10.1101/702316 — cancer biology — Posted on 2019-07-24
774 BORIS/CTCFL promotes a switch from a proliferative towards an invasive phenotype in melanoma cells
Janssen, S. M.; Moscona, R.; Elchebly, M.; Papadakis, A. I.; Redpath, M.; Wang, H.; Rubin, E.; van Kempen, L. C.; Spatz, A.
10.1101/560474 — cancer biology — Posted on 2019-07-24
775 Rational use of Episodic and Working Memory: A Normative Account of Prospective Memory
Momennejad, I.; Lewis-Peacock, J. A.; Norman, K. A.; Cohen, J. D.; Singh, S.; Lewis, R. L.
10.1101/580324 — animal behavior and cognition — Posted on 2019-07-24
777 Gclc deletion in surface-ectoderm tissues induces microphthalmia
Thompson, B.; Chen, Y.; Philippe, J.; Anderson, D.; Golla, J. P.; Davidson, E.; Apostolopoulos, N.; Schey, K.; Katsanis, N.; Orlicky, D. J.; Thompson, D.; Vasiliou, V.
10.1101/700591 — developmental biology — Posted on 2019-07-24
780 Dopamine transporter trafficking and Rit2 GTPase:In vivo impact and mechanism of action
Fagan, R. R.; Kearney, P. J.; Sweeney, C. G.; Luethi, D.; Schoot Uiterkamp, F. E.; Schicker, K.; O'Connor, L. C.; Sitte, H. H.; Melikian, H. E.
10.1101/712448 — neuroscience — Posted on 2019-07-24
786 Dopamine replacement remediates risk aversion in Parkinson’s disease in a value-independent manner
Cherkasova, M.; Corrow, J. C.; Taylor, A.; Yeung, S. C.; Stubbs, J. L.; McKeown, M. J.; Appel-Cresswell, S.; Stoessl, A. J.; Barton, J. J.
10.1101/625467 — neuroscience — Posted on 2019-07-24
787 Dynamics of functional networks for syllable and word-level processing
Rimmele, J. M.; Sun, Y.; Michalareas, G.; Ghitza, O.; Poeppel, D.
10.1101/584375 — neuroscience — Posted on 2019-07-24
790 A catalog of cis-regulatory mutations in 12 major cancer types
Cheng, Z.; Vermeulen, M.; Rollins-Green, M.; DeVeale, B.; Babak, T.
10.1101/710103 — genomics — Posted on 2019-07-24
791 The Genetic History of France
SAINT PIERRE, A.; Giemza, J.; Karakachoff, M.; Alves, I.; Amouyel, P.; Dartigues, J.-F.; Tzourio, C.; Monteil, M.; Galan, P.; Hercberg, S.; Redon, R.; Genin, E.; Dina, C.
10.1101/712497 — genetics — Posted on 2019-07-24
794 The wild species genome ancestry of domestic chickens
Lawal, R. A.; Martin, S. H.; Vanmechelen, K.; Vereijken, A.; Silva, P.; Al-Atiyat, R. M.; Aljumaah, R. S.; Mwacharo, J. M.; Wu, D.-D.; Zhang, Y.-P.; Hocking, P. M.; Smith, J.; Wragg, D.; Hanotte, O.
10.1101/711366 — evolutionary biology — Posted on 2019-07-24
795 EuRBPDB: a comprehensive resource for annotation, functional and oncological investigation of eukaryotic RNA binding proteins (RBPs)
Liao, J.-Y.; Yang, B.; Zhang, Y.-C.; Wang, X.-J.; Ye, Y.; Peng, J.-W.; Yang, Z.-Z.; He, J.-H.; Zhang, Y.; Hu, K.; Lin, D.-C.; Yin, D.
10.1101/713164 — bioinformatics — Posted on 2019-07-24
797 Prediction of specific TCR-peptide binding from large dictionaries of TCR-peptide pairs
Springer, I.; Besser, H.; Tickotsky-Moskovitz, N.; Dvorkin, S.; Louzoun, Y.
10.1101/650861 — immunology — Posted on 2019-07-24
799 Class IIa HDACs regulate learning and memory through dynamic experience-dependent repression of transcription.
Zhu, Y.; Huang, M.; Bushong, E.; Phan, S.; Uytiepo, M.; Beutter, E.; Boemer, D.; Tsui, K.; Ellisman, M.; Maximov, A.
10.1101/540856 — neuroscience — Posted on 2019-07-24
800 CHIME: CMOS-hosted in-vivo microelectrodes for massively scalable neuronal recordings
Kollo, M.; Racz, R. R.; Hanna, M.--E. S.; Obaid, A. M.; Angle, M. R.; Wray, W.; Kong, Y.; Hierlemann, A.; Muller, J.; Melosh, N. A.; Schaefer, A. T.
10.1101/570069 — neuroscience — Posted on 2019-07-24
808 A polygenic and phenotypic risk prediction for Polycystic Ovary Syndrome evaluated by Phenome-wide association studies
Joo, Y. Y.; Actkins, K.; Pacheco, J. A.; Basile, A. O.; Carroll, R.; Crosslin, D. R.; Day, F.; Denny, J. C.; Velez Edwards, D. R.; Hakonarson, H.; Harley, J. B.; Hebbring, S. J.; Ho, K.; Jarvik, G. P.; Jones, M.; Karderi, T.; Mentch, F. D.; Meun, C.; Namjou, B.; Pendergrass, S.; Ritchie, M. D.; Stanaway, I. B.; Urbanek, M.; Walunas, T. L.; Smith, M.; Chisholm, R. L.; International PCOS Consortium, ; Kho, A. N.; Davis, L.; Hayes, M. G.
10.1101/714113 — bioinformatics — Posted on 2019-07-24
809 Cerebral ischemia induces TRPC6 in the glomerular podocytes: A novel role for HIF1α/ZEB2 axis in the pathogenesis of stroke-induced proteinuria
Nakuluri, K.; Nishad, R.; Mukhi, D.; Teertam, S. K.; Nakka, V. P.; Kolligundla, L. P.; Narne, P.; Natuva, S. S. K.; Phanithi, P. B.; Pasupulati, A. K.
10.1101/538959 — pathology — Posted on 2019-07-24
810 A transposable element insertion is the switch between alternative life history strategies
Woronik, A.; Tunstrom, K.; Perry, M. W.; Neethiraj, R.; Stefanescu, C.; de la Paz Celorio-Mancera, M.; Brattstrom, O.; Hill, J.; Lehmann, P.; Kakela, R.; Wheat, C. W.
10.1101/424879 — genomics — Posted on 2019-07-24
812 Collagen Production and Niche Engineering: A Novel Strategy for Cancer Cells to Survive Acidosis and Evolve
Damaghi, M.; Byrne, S.; Xu, L.; Tafreshi, N.; Fang, B.; Koomen, J.; Karolak, A.; Chen, T.; Johnson, J.; Gallant, N.; Marusyk, A.; Gillies, R. J.
10.1101/711978 — cancer biology — Posted on 2019-07-24
813 Exon definition facilitates reliable control of alternative splicing
Enculescu, M.; Braun, S.; Setty, S. T.; Zarnack, K.; Koenig, J.; Legewie, S.
10.1101/714022 — systems biology — Posted on 2019-07-24
816 Passive transfer of fibromyalgia pain from patients to mice.
Goebel, A.; Gentry, C.; Cuhadar, U.; Krock, E.; Vastani, N.; Sensi, S.; Sandor, K.; Jurczak, A.; Baharpoor, A.; Brieskorn, L.; Morado Urbina, C.; Sandstrom, A.; Tour, J.; Kadetoff, D.; Kosek, E.; Bevan, S.; Svensson, C.; Andersson, D. A.
10.1101/713495 — neuroscience — Posted on 2019-07-24
818 Negative plant-microbiome feedback limits productivity in aquaponics
Day, J. A.; Otwell, A. E.; Diener, C.; Tams, K. E.; Bebout, B. M.; Detweiler, A. M.; Lee, M. D.; Scott, M. T.; Ta, W.; Ha, M.; Carreon, S. A.; Tong, K.; Ali, A. A.; Gibbons, S. M.; Baliga, N. S.
10.1101/709162 — microbiology — Posted on 2019-07-24
820 Celsr1a is essential for tissue homeostasis and onset of aging phenotypes in the zebrafish.
Li, C.; Barton, C.; Henke, K.; Daane, J.; Caetano-Lopez, J.; Tanguay, R.; Harris, M. P.
10.1101/714063 — developmental biology — Posted on 2019-07-24
821 ThX - A next-generation probe for the early detection of amyloid aggregates
Needham, L.-M.; Weber, J.; Varela, J. A.; Fyfe, J. W. B.; Do, D. T.; Xu, C. K.; Keenlyside, B.; Cliffe, R.; Klenerman, D.; Dobson, C. M.; Hunter, C. A.; Bohndiek, S. E.; Snaddon, T. N.; Lee, S. F.
10.1101/713594 — biophysics — Posted on 2019-07-24
823 Quantitative analysis of in vivo methionine oxidation of the human proteome
Bettinger, J. Q.; Welle, K. A.; Hryhorenko, J. R.; Ghaemmaghami, S.
10.1101/714089 — biochemistry — Posted on 2019-07-24
825 Atlas of transcriptionally active transposable elements in human adult tissues
Bogu, G. K.; Reverter, F.; Marti-Renom, M. A.; Snyder, M.; Guigo, R.
10.1101/714212 — genomics — Posted on 2019-07-24
827 Structural control for the coordinated assembly into functional pathogenic type-3 secretion systems
Goessweiner-Mohr, N.; Kotov, V.; Brunner, M. J.; Mayr, J.; Wald, J.; Kuhlen, L.; Miletic, S.; Vesper, O.; Lugmayr, W.; Wagner, S.; DiMaio, F.; Lea, S.; Marlovits, T. C.
10.1101/714097 — molecular biology — Posted on 2019-07-24
828 Taxon appearance from extraction and amplification steps demonstrates the value of multiple controls in tick microbiome analysis
Lejal, E.; Estrada-Pena, A.; Marsot, M.; Cosson, J.-F.; Rue, O.; Mariadassou, M.; Midoux, C.; Vayssier-Taussat, M.; Pollet, T.
10.1101/714030 — microbiology — Posted on 2019-07-24
829 uORFlight: a vehicle towards uORF-mediated translational regulation mechanisms in eukaryotes
Niu, R.; Zhou, Y.; Mou, R.; Tang, Z.; Wang, Z.; Zhou, G.; Guo, S.; Yuan, M.; Xu, G.
10.1101/713321 — genomics — Posted on 2019-07-24
830 Actin accumulates nesprin-2 at the front of the nucleus during confined cell migration
Davidson, P. M.; Battistella, A.; Dejardin, T.; Betz, T.; Plastino, J.; Cadot, B.; Borghi, N.; Sykes, C.
10.1101/713982 — cell biology — Posted on 2019-07-24
831 Overlapping attentional networks yield divergent behavioral predictions across tasks: Neuromarkers for diffuse and focused attention?
Wu, E. X. W.; Liaw, G. J.; Goh, R. Z.; Chia, T. T. Y.; Chee, A. M. J.; Obana, T.; Rosenberg, M. D.; Yeo, B. T. T.; Asplund, C. L.
10.1101/713339 — neuroscience — Posted on 2019-07-24
832 Low-Density EEG for Neural Activity Reconstruction Using Multivariate Empirical Mode Decomposition
Soler, A. F.; Munoz Gutierrez, P. A.; Bueno Lopez, M.; Giraldo, E.; Molinas, M.
10.1101/713610 — neuroscience — Posted on 2019-07-24
834 IFITMs Inhibit Cell Fusion Mediated by Trophoblast Syncytins
Zani, A.; Zhang, L.; Kenney, A.; McMichael, T. M.; Kwiek, J. J.; Liu, S.-L.; Yount, J. S.
10.1101/713032 — immunology — Posted on 2019-07-24
835 Targeting DNA damage response and Replication Stress in Pancreatic Cancer
Dreyer, S.; Upstill-Goddard, R.; Paulus-Hock, V.; Paris, C.; Maria-Lampraki, E.; Dray, E.; Serrels, B.; Rebus, S.; Brunton, H.; Nourse, C.; Bailey, U.-M.; Jones, M.; Moran-Jones, K.; Wright, D.; Duthie, F.; Oien, K.; Evers, L.; McKay, C.; McGregor, G.; Gulati, A.; Brough, R.; Bajrami, I.; Pettitt, S.; Dzubiunski, M.; Candido, J.; Balkwill, F.; Barry, S.; Grutzmann, R.; Rahib, L.; Glasgow Precision Oncology Laboratory, ; Australian Pancreatic Genome Initiative, ; Johns, A.; Pajic, M.; Froeling, F.; Beer, P.; Musgrove, E.; Petersen, G.; Ashworth, A.; Frame, M.; Crawford, H.; Simeone, D.; Lord,
10.1101/713545 — cancer biology — Posted on 2019-07-24
838 Differentiation of Pluripotent Synthetic Minimal Cells via Genetic Circuits and Programmable Mating
Gaut, N. J.; Gomez-Garcia, J.; Heili, J. M.; Cash, B.; Han, Q.; Engelhart, A. E.; Adamala, K. P.
10.1101/712968 — synthetic biology — Posted on 2019-07-24
839 Dynamic changes in RNA-chromatin interactome promote endothelial dysfunction
Calandrelli, R.; Xu, L.; Luo, Y.; Wu, W.; Fan, X.; Nguyen, T.; Chen, C.; Sriram, K.; Natarajan, R.; Chen, Z.; Zhong, S.
10.1101/712950 — genomics — Posted on 2019-07-24
841 SCelVis: Powerful explorative single cell data analysis on the desktop and in the cloud
Obermayer, B.; Holtgrewe, M.; Nieminen, M.; Messerschmidt, C.; Beule, D.
10.1101/713008 — bioinformatics — Posted on 2019-07-24
842 Primate hippocampus size and organisation are predicted by sociality but not diet
Todorov, O. S.; Weisbecker, V.; Gilissen, E.; Zilles, K.; de Sousa, A. A.
10.1101/713867 — evolutionary biology — Posted on 2019-07-24
844 Fungal seed pathogens of wild chili peppers possess multiple mechanisms to tolerate capsaicinoids
Adams, C. A.; Zimmerman, K.; Fenstermacher, K.; Thompson, M. G.; Skyrud, W.; Behie, S. W.; Pringle, A.
10.1101/712711 — microbiology — Posted on 2019-07-24
848 Inhibiting Mycobacterium tuberculosis ClpP1P2 by addressing the equatorial handle domain of ClpP1 subunit
Yang, Y.; Zhu, Y.; Yang, T.; Li, T.; Ju, Y.; Song, Y.; He, J.; Liu, H.; Bao, R.; Luo, Y.
10.1101/713214 — biochemistry — Posted on 2019-07-24
849 Plant defense resistance in natural enemies of a specialist insect herbivore
Zhang, X.; van Doan, C.; Arce, C. C. M.; Hu, L.; Gruenig, S.; Parisod, C.; Hibbard, B. E.; Herve, M.; Robert, C. A. M.; Machado, R. A. R.; Erb, M.
10.1101/710681 — plant biology — Posted on 2019-07-24
851 Discovery and Quality Analysis of a Comprehensive Set of Structural Variants and Short Tandem Repeats using Deep Whole Genome Sequencing Data
Jakubosky, D.; Smith, E. N.; D'Antonio, M.; Bonder, M. J.; Young Greenwald, W. W.; Matsui, H.; D'Antonio-Chronowska, A.; i2QTL Consortium, ; HipSci Consortium, ; Stegle, O.; Montgomery, S. B.; DeBoever, C.; Frazer, K. A.
10.1101/713198 — genomics — Posted on 2019-07-24
852 Multi-ancestry GWAS of the electrocardiographic PR interval identifies 210 loci underlying cardiac conduction
Ntalla, I.; Weng, L.-C.; Cartwright, J. H.; Hall, A.; Sveinbjornsson, G.; Tucker, N. R.; Seung Young, C.; Chaffin, M. D.; Roselli, C.; Barnes, M. R.; Mifsud, B.; Warren, H. R.; Hayward, C.; Marten, J.; Cranley, J. J.; Concas, M. P.; Gasparini, P.; Boutin, T.; Kolcic, I.; Polasek, O.; Rudan, I.; Araujo, N. M.; Lima-Costa, M. F.; Ribeiro, A. L. P.; Souza, R. P.; Tarazona-Santos, E.; Giedraitis, V.; Ingelsson, E.; Mahajan, A.; Morris, A. P.; Del Greco M., F.; Foco, L.; Gogele, M.; Hicks, A. A.; Cook, J. P.; Lind, L.; Lindgren, C. M.; Sundstrom, J.; Nelson, C. P.; Riaz, M. B.; Samani, N. J.; Sinag
10.1101/712398 — genetics — Posted on 2019-07-24
854 EuRBPDB: a comprehensive resource for annotation, functional and oncological investigation of eukaryotic RNA binding proteins (RBPs)
Liao, J.-Y.; Yang, B.; Zhang, Y.-C.; Wang, X.-J.; Ye, Y.; Peng, J.-W.; Yang, Z.-Z.; He, J.-H.; Zhang, Y.; Hu, K.; Lin, D.-C.; Yin, D.
10.1101/713164 — bioinformatics — Posted on 2019-07-24
857 Association of maternal prenatal psychological stressors and distress with maternal and early infant faecal bacterial profile
Naude, P. J. W.; Claassen, S.; Gardner-Lubbe, S.; Botha, G.; Kaba, M.; Zar, H. J.; Nicol, M. P.; Stein, D. J.
10.1101/713602 — neuroscience — Posted on 2019-07-24
866 Structural fuzziness of the RNA-organizing protein SERF1a determines a toxic gain-of-interaction
Falsone, F.; Meyer, H.; Dellago, H.; Tam-Amersdorfer, C.; Merle, D.; Parlato, R.; Gesslbauer, B.; Almer, J.; Gschwandtner, M.; Leon, A.; Franzmann, T.; Grillari, J.; Kungl, A.; Zangger, K.
10.1101/713511 — biochemistry — Posted on 2019-07-24
867 Cross-species epigenetic regulation of nucleus accumbens KCNN3 transcript variants by excessive ethanol drinking and dependence
Cervera-Juanes, R.; Padula, A. E.; Wilhem, L. J.; Park, B.; Grant, K. A.; Ferguson, B.; Mulholland, P. J.
10.1101/713826 — neuroscience — Posted on 2019-07-24
870 Measuring and Modelling the Emergence of Order in the Mouse Retinocollicular Projection
Lyngholm, D.; Sterratt, D. C.; Hjorth, J.; Willshaw, D.; Eglen, S.; Thompson, I. D.
10.1101/713628 — neuroscience — Posted on 2019-07-24
871 Vaccine-induced ICOS+CD38+ cTfh are sensitive biosensors of age-related changes in inflammatory pathways
Herati, R. S.; Silva, L. V.; Vella, L. A.; Muselman, A.; Alanio, C.; Bengsch, B.; Kurupati, R.; Kannan, S.; Manne, S.; Kossenkov, A.; Canaday, D.; Doyle, S.; Ertl, H.; Schmader, K.; Wherry, E. J.
10.1101/711911 — immunology — Posted on 2019-07-24
872 Identification of porcine RUNX1 as an LPS-dependent gene expression regulator in PBMCs by Super deepSAGE sequencing of multiple tissues
Huang, T.; Yang, M.; Dong, K.; Xu, M.; Liu, J.; Chen, Z.; Zhu, S.; Chen, W.; Yin, J.; Jin, K.; Deng, Y.; Guan, Z.; Huang, X.; Yang, J.; Han, R.; Yao, M.
10.1101/713206 — genomics — Posted on 2019-07-24
873 Identification of expression quantitative trait loci in the skeletal muscle of Thoroughbreds reveals heritable variation in expression of genes relevant to cofactor metabolism
Farries, G.; Bryan, K.; McGivney, C. L.; McGettigan, P. A.; Gough, K. F.; Browne, J. A.; MacHugh, D. E.; Katz, L. M.; Hill, E. W.
10.1101/713669 — genomics — Posted on 2019-07-24
874 WiPP: Workflow for improved Peak Picking for Gas Chromatography-Mass Spectrometry (GC-MS) data
Borgsmüller, N.; Gloaguen, Y.; Opialla, T.; Blanc, E.; Sicard, E.; Royer, A.-L.; Le Bizec, B.; Durand, S.; Migne, C.; Petera, M.; Pujos-Guillot, E.; Giacomoni, F.; Guitton, Y.; Beule, D.; Kirwan, J.
10.1101/713925 — bioinformatics — Posted on 2019-07-24
875 Three Dimensional Root CT Segmentation using Multi-Resolution Encoder-Decoder Networks
Soltaninejad, M.; Sturrock, C. J.; Griffiths, M. D.; Pridmore, T. P.; Pound, M. P.
10.1101/713859 — bioinformatics — Posted on 2019-07-24
876 Site-directed M2 proton channel inhibitors enable synergistic combination therapy for rimantadine-resistant pandemic influenza
Scott, C.; Kankanala, J.; Foster, T. L.; Goldhill, D.; Simmons, K. J.; Pingen, M.; Bentham, M. J.; Atkins, E.; Loundras, E.-A.; Elderfield, R.; Claridge, J. K.; Thompson, J.; Stilwell, R.; Tathineni, R.; McKimmie, C. S.; Targett-Adams, P.; Schnell, J. R.; Cook, G. P.; Barclay, W. S.; Foster, R.; Griffin, S.
10.1101/713636 — microbiology — Posted on 2019-07-24
877 A small membrane protein critical to both the offensive and defensive capabilities of Staphylococcus aureus.
Massey, R. C.; Duggan, S.; Laabei, M.; Alnahari, A.; O'Brien, E.; Lacey, K.; Bacon, L.; Heesom, K.; Fu, C.-L.; Otto, M.; Skaar, E.; McLoughlin, R.
10.1101/712737 — microbiology — Posted on 2019-07-24
878 Substrate Transport is Mediated not only by P-glycoprotein but also by Lipid Penetration
Yu, Y.; Wang, J.; Chen, Z.; Wang, G.; Xu, Z.; Shao, Q.; Shi, J.; Zhu, W.
10.1101/713503 — biophysics — Posted on 2019-07-24
879 Principles of Cell Circuits for Tissue Repair and Fibrosis
Adler, M.; Mayo, A.; Zhou, X.; Franklin, R.; Meizlish, M.; Medzhitov, R.; Kallenberger, S.; Alon, U.
10.1101/710012 — systems biology — Posted on 2019-07-24
881 TMEM16F phospholipid scramblase mediates trophoblast fusion and placental development
Yang, H.; Zhang, Y.; Le, T.; Grabau, R.; Mohseni, Z.; Kim, H.; Natale, D. R.; Feng, L.; Pan, H.
10.1101/711473 — cell biology — Posted on 2019-07-24
882 Ki-67 supports global gene expression programmes driving tumourigenesis
Mrouj, K.; Singh, P.; Sobecki, M.; Dubra, G.; Al Ghoul, E.; Aznar, A. B.; prieto, S.; Vincent, C.; Pirot, N.; Bernex, F.; Bordignon, B.; Hassen-Khodja, C.; Pouzolles, M.; Zimmerman, V.; Dardalhon, V.; Villalba, M.; Krasinska, L.; Fisher, D.
10.1101/712380 — cancer biology — Posted on 2019-07-24
889 Evaluation of Trichoderma harzianum mutant lines in the resistance induction against white mold and growth promotion of common bean
Ulhoa, C. J.; Brandao, R. S.; Qualhato, T. F.; Valdisser, P. A. M. R.; Cortes, M. V. d. C. B.; Junior, M. L.; Silva, R.; Vieira, P.
10.1101/713776 — microbiology — Posted on 2019-07-24
891 A computational model tracks whole-lung Mycobacterium tuberculosis infection and predicts factors that inhibit dissemination
Wessler, T.; Joslyn, L. R.; Borish, H. J.; Gideon, H. P.; Flynn, J. L.; Kirschner, D. E.; Linderman, J. J.
10.1101/713701 — immunology — Posted on 2019-07-24
893 Identification of snails and parasites of medical importance via convolutional neural network: an application for human schistosomiasis
Liu, Z. Y.-C.; Chamberlin, A. J.; Shome, P.; Jones, I. J.; Riveau, G.; Ndione, R. A.; Bandagny, L.; Jouanard, N.; Van Eck, P.; Ngo, T.; Sokolow, S. H.; De Leo, G. A.
10.1101/713727 — bioinformatics — Posted on 2019-07-24
894 Diurnal variation in xylem water isotopic signature biases depth of root-water uptake estimates
De Deurwaerder, H.; Visser, M. D.; Detto, M.; Boeckx, P.; Meunier, F.; Zhao, L.; Wang, L.; Verbeeck, H.
10.1101/712554 — plant biology — Posted on 2019-07-24
895 Global Analysis of Human mRNA Folding Disruptions in Synonymous Variants Demonstrates Significant Population Constraint
Gaither, J. B. S.; Lammi, G. E.; Li, J. L.; Gordon, D. M.; Kuck, H. C.; Kelly, B. J.; Fitch, J. R.; White, P.
10.1101/712679 — genomics — Posted on 2019-07-24
896 Seagrass mediates microalgal community structure at a distance
Jacobs-Palmer, E.; Gallego, R.; Ramon-Laca, A.; Kunselman, E.; Cribari, K.; Horwith, M.; Kelly, R. P.
10.1101/712612 — ecology — Posted on 2019-07-24
898 Integrated characterization of subsurface media from locations up- and down-gradient of a uranium-contaminated aquifer
Moon, J. W.; Paradis, C. J.; Joyner, D. C.; von Netzer, F.; Majumder, E. L.; Dixon, E.; Podar, M.; Ge, X.; Walian, P. J.; Smith, H. J.; Wu, X.; Zane, G. M.; Walker, K. F.; Thorgersen, M. P.; Poole, F. L.; Lui, L. M.; Adams, B. G.; De Leon, K. B.; Brewer, S. S.; Williams, D. E.; Lowe, K. A.; Rodriquez, M.; Mehlhorn, T. L.; Pfiffner, S. M.; Chakraborty, R.; Arkin, A. P.; Wall, J. D.; Fields, M. W.; Adams, M. W. W.; Stahl, D. A.; Elias, D. A.; Hazen, T. C.
10.1101/712562 — systems biology — Posted on 2019-07-24
900 Broadband slow-wave modulation in posterior and anterior cortex tracks distinct states of propofol-induced unconsciousness
Stephen, E. P.; Hotan, G. C.; Pierce, E. T.; Harrell, P. G.; Walsh, J. L.; Brown, E. N.; Purdon, P. P.
10.1101/712604 — neuroscience — Posted on 2019-07-24
901 Ovarian hormones mediate the prophylactic efficacy of (R,S)-ketamine and (2R,6R)-hydroxynorketamine in female mice
Chen, B. K.; LaGamma, C. T.; Xu, X.; Deng, S.-X.; Brachman, R. A.; Suckow, R. F.; Cooper, T. B.; Landry, D. W.; Denny, C. A.
10.1101/712752 — neuroscience — Posted on 2019-07-24
904 Temporal integration of narrative information in a hippocampal amnesic patient
Zuo, X.; Honey, C. J.; Barense, M. D.; Crombie, D.; Norman, K. A.; Hasson, U.; Chen, J.
10.1101/713180 — neuroscience — Posted on 2019-07-24
906 Urbilaterian origin and evolution of sNPF-type neuropeptide signalling
Yanez Guerra, L. A.; Zhong, X.; Moghul, I.; Butts, T.; Zampronio, C.; Jones, A. M.; Mirabeau, O.; Elphick, M. R.
10.1101/712687 — neuroscience — Posted on 2019-07-24
908 Prophylactic efficacy of 5-HT4R agonists against stress
Chen, B. K.; Mendez-David, I.; Faye, C.; Gardier, A. M.; David, D. J.; Denny, C. A.
10.1101/712786 — neuroscience — Posted on 2019-07-24
912 A polygenic risk score for breast cancer in U.S. Latinas and Latin-American women
Shieh, Y.; Fejerman, L.; Lott, P. C.; Marker, K.; Sawyer, S. D.; Hu, D.; Huntsman, S.; Torres, J.; Echeverry, M.; Bohorquez, M. E.; Martinez-Chequer, J. C.; Polanco-Echeverry, G.; Estrada-Florez, A. P.; the COLUMBUS Consortium, ; Haiman, C. A.; John, E. M.; Kushi, L. H.; Torres-Mejia, G.; Viadaurre, T.; Weitzel, J. N.; Casavilco Zambrano, S.; Carvajal-Carmona, L. G.; Ziv, E.; Neuhausen, S. L.
10.1101/598730 — epidemiology — Posted on 2019-07-24
916 GAMer 2: A System for 3D Mesh Processing of Cellular Electron Micrographs
Lee, C. T.; Laughlin, J. G.; Angliviel de La Beaumelle, N.; Amaro, R.; McCammon, J. A.; Ramamoorthi, R.; Holst, M. J.; Rangamani, P.
10.1101/534479 — systems biology — Posted on 2019-07-23
917 cAMP signalling is required for the actions of IP3 on Ca2+-transients in cardiac atria and beating rate in sino-atrial node
Capel, R. A.; Collins, T.; Bose, S. J.; Rajasundaram, S.; Ayagama, T.; Zaccolo, M.; Burton, R. A.; Terrar, D. A.
10.1101/694349 — physiology — Posted on 2019-07-24
922 Reward boosts neural coding of task rules to optimise cognitive flexibility
Hall-McMaster, S.; Muhle-Karbe, P. S.; Myers, N. E.; Stokes, M. G.
10.1101/578468 — neuroscience — Posted on 2019-07-23
923 Functional annotation of rare structural variation in the human brain
Han, L.; Zhao, X.; Benton, M. L.; Perumal, T.; Collins, R.; Hoffman, G.; Johnson, J.; Sloofman, L.; Wang, H.; Consortium, C.; Brennand, K.; Brand, H.; Sieberts, S.; Marenco, S.; Peters, M.; Lipska, B.; Roussos, P.; Capra, J.; Talkowski, M.; Ruderfer, D.
10.1101/711754 — genomics — Posted on 2019-07-23
924 Sex Differences in Predictors of Seizure in Contrast-Enhancing Gliomas at Clinical Presentation: A Network Approach
Johnston, S. K.; Khurana, A.; Whitmire, P.; Ranjbar, S.; Sharma, A.; Hawkins-Daarud, A.; Rubin, J. B.; Porter, A. B.; Canoll, P. D.; Egan, K.; Hu, L. S.; Mrugala, M. M.; Kumthekar, P.; Swanson, K. R.
10.1101/708032 — cancer biology — Posted on 2019-07-23
925 High Spatial Resolution Ambient Ionization Mass Spectrometry Imaging Using Microscopy Image Fusion Determines Tumor Margins
Lin, L.-E.; Chen, C.-L.; Huang, Y.-C.; Chung, H.-H.; Chen, K.-C.; Peng, Y.-J.; Lin, C.-W.; Ding, S.-T.; Wang, M.-Y.; Shen, T.-L.; Hsu, C.-C.
10.1101/657494 — bioinformatics — Posted on 2019-07-23
927 Comprehensive genome-wide identification of angiosperm upstream ORFs with peptide sequences conserved in various taxonomic ranges using a novel pipeline, ESUCA
Takahashi, H.; Hayashi, N.; Yamashita, Y.; Naito, S.; Takahashi, A.; Fuse, K.; Satou, K.; Endo, T.; Kojima, S.; Onouchi, H.
10.1101/524090 — bioinformatics — Posted on 2019-07-23
929 Nucleus Accumbens Fast-Spiking Interneurons Constrain Impulsive Action
Pisansky, M. T.; Lefevre, E. M.; Retzlaff, C. L.; Trieu, B. H.; Leipold, D. W.; Rothwell, P. E.
10.1101/516609 — neuroscience — Posted on 2019-07-23
930 A moment of change: shifts in myeloarchitecture characterise adolescent development of cortical gradients
Paquola, C.; Bethlehem, R. A.; Seidlitz, J.; Wagstyl, K.; Romero-Garcia, R.; Whitaker, K. J.; Vos De Wael, R.; Williams, G. B.; NSPN Consortium, ; Vertes, P. E.; Margulies, D. S.; Bernhardt, B. C.; Bullmore, E. T.
10.1101/706341 — neuroscience — Posted on 2019-07-23
931 Gestational pertussis vaccination and the infants cellular immune response against whole-cell pertussis vaccine in the first year of life
Argondizo Correia, C.; Rehder de Andrade Vaz-de-Lima, L.; Uchima Uehara, E.; Gatti Fernandes, E.; Keico Sato, H.; Sayuri Sato, A. P.; Jose de Albuquerque Luna, E.; Ayres de Castilho, E.; Alves de Brito, C.
10.1101/697722 — immunology — Posted on 2019-07-23
933 Multicellular tumor spheroids- an effective in vitro model for understanding drug resistance in head and neck cancer
Azharuddin, M.; Roberg, K.; Dhara, A. K.; Jain, M. V.; Darcy, P.; Hinkula, J.; Slater, N. K. H.; Patra, H. K.
10.1101/702316 — cancer biology — Posted on 2019-07-23
934 Genome-Scale reconstruction of Paenarthrobacter aurescens TC1 metabolic model towards the study of atrazine bioremediation
Ofaim, S.; Zarecki, R.; Porob, S.; Gat, D.; Lahav, T.; Kashi, Y.; Aly, R.; Eizenberg, H.; Ronen, Z.; Freilich, S.
10.1101/536011 — bioinformatics — Posted on 2019-07-23
937 Tropomyosin Tpm3.1 is required to maintain the structure and function of the axon initial segment
Abouelezz, A.; Stefen, H.; Segerstrale, M.; Micinski, D.; Minkeviciene, R.; Hardeman, E. C.; Gunning, P. W.; Hoogenraad, C.; Taira, T.; Fath, T.; Hotulainen, P.
10.1101/711614 — neuroscience — Posted on 2019-07-23
938 Epigenomic and functional characterization of a core DNA methyltransferase in the human pathogen Clostridium difficile
Oliveira, P. H.; Ribis, J. W.; Garrett, E. M.; Trzilova, D.; Kim, A.; Sekulovic, O.; Mead, E. A.; Pak, T.; Zhu, S.; Deikus, G.; Touchon, M.; Beckford, C.; Zeitouni, N. E.; Altman, D.; Webster, E.; Oussenko, I.; Bunyavanich, S.; Aggarwal, A. K.; Bashir, A.; Patel, G.; Hamula, C.; Huprikar, S.; Schadt, E. E.; Sebra, R.; Bakel, H. v.; Kasarskis, A.; Tamayo, R.; Shen, A.; Fang, G.
10.1101/398891 — genomics — Posted on 2019-07-23
939 Microtubules control cellular shape and coherence in amoeboid migrating cells
Kopf, A.; Renkawitz, J.; Hauschild, R.; Girkontaite, I.; Tedford, K.; Merrin, J.; Thorn-Seshold, O.; Trauner, D.; Haecker, H.; Fischer, K. D.; Kiermaier, E.; Sixt, M.
10.1101/609420 — cell biology — Posted on 2019-07-23
940 Unraveling the state-specific nature of the native extracellular matrix via multidimensional characterization of its material properties
Shimshoni, E.; Afik, R.; Solomonov, I.; Adir, I.; Shenoy, A.; Adler, M.; Puricelli, L.; Ghini, V.; Mouhadeb, O.; Gluck, N.; Fishman, S.; Werner, L.; Shouval, D. S.; Varol, C.; Podesta, A.; Turano, P.; Geiger, T.; Milani, P.; Luchinat, C.; Alon, U.; Sagi, I.
10.1101/665653 — biophysics — Posted on 2019-07-23
941 Isoform-selective NADPH oxidase inhibitor panel for pharmacological target validation
Dao, V. T.-V.; Elbatreek, M. H.; Altenhöfer, S.; Casas, A. I.; Pachado, M. P.; Neullens, C. T.; Knaus, U.; Schmidt, H. H. H. W.
10.1101/382226 — pharmacology and toxicology — Posted on 2019-07-23
945 Unique transcriptomic landscapes identified in idiopathic spontaneous and infection related preterm births compared to normal term births
Brockway, H. M.; Kallapur, S. G.; Buhimschi, I. A.; Buhimschi, C. S.; Ackerman, W. E.; Muglia, L. J.; Jones, H. N.
10.1101/386185 — developmental biology — Posted on 2019-07-23
946 Well-Differentiated Papillary Mesothelioma of the Peritoneum is Genetically Distinct from Malignant Mesothelioma
Shrestha, R.; Nabavi, N.; Volik, S.; Anderson, S.; Haegert, A.; McConeghy, B.; Brahmbhatt, S.; Bell, R. H.; Le Bihan, S.; Wang, Y.; Collins, C. C. C.; Churg, A.
10.1101/632810 — cancer biology — Posted on 2019-07-23
947 Similarity and strength of glomerular odor representations define neural metric of sniff-invariant discrimination time
Bhattacharjee, A. S.; Konakamchi, S.; Turaev, D.; Vincis, R.; Nunes, D.; Dingankar, A. A.; Spors, H.; Carleton, A.; Kuner, T.; Abraham, N. M.
10.1101/356279 — neuroscience — Posted on 2019-07-23
948 Fundamental Law of Memory Recall
Naim, M.; Katkov, M.; Romani, S.; Tsodyks, M.
10.1101/510750 — neuroscience — Posted on 2019-07-23
949 Dopamine transporter trafficking and Rit2 GTPase:In vivo impact and mechanism of action
Fagan, R. R.; Kearney, P. J.; Sweeney, C. G.; Luethi, D.; Schooter Uiterkamp, F. E.; Schicker, K.; O'Connor, L. C.; Sitte, H. H.; Melikian, H. E.
10.1101/712448 — neuroscience — Posted on 2019-07-23
950 The Genetic History of France
SAINT PIERRE, A.; Giemza, J.; Karakachoff, M.; Alves, I.; Amouyel, P.; Dartigues, J.-F.; Tzourio, C.; Monteil, M.; Galan, P.; Hercberg, S.; Redon, R.; Genin, E.; Dina, C.
10.1101/712497 — genetics — Posted on 2019-07-23
951 Parameters and determinants of responses to selection in antibody libraries
Schulz, S.; Boyer, S.; Smerlak, M.; Cocco, S.; Monasson, R.; Nizak, C.; Rivoire, O.
10.1101/712539 — biophysics — Posted on 2019-07-23
955 Comparison of prokaryotic communities among fields exhibiting different disinfestation effects by anaerobic soil disinfestation
Lee, C. G.; Iida, T.; Matusda, E.; Yoshida, K.; Kawabe, M.; Maeda, M.; Watanabe, H.; Muramoto, Y.; Otani, Y.; Nakaho, K.; Ohkuma, M.
10.1101/596825 — microbiology — Posted on 2019-07-23
956 Rapid dissolution of dioecy by experimental evolution
Cossard, G. G.; Gerchen, J. F.; Li, X.; Cuenot, Y.; Pannell, J.
10.1101/712414 — evolutionary biology — Posted on 2019-07-23
958 Jagged-1 regulates Foxp3 expression and cytokine production in CD4+ T cells
Kimura, S.; Allen, R.; Scola, M.; Lukacs, N. W.; Kunkel, S. L.; Schaller, M.
10.1101/712430 — immunology — Posted on 2019-07-23
961 Exploring the infection dynamics of a bacterial pathogen on a remote oceanic island reveals annual epizootics impacting an albatross population
Jaeger, A.; Gamble, A.; Lagadec, E.; Lebarbenchon, C.; Bourret, V.; Tornos, J.; Barbraud, C.; Lemberger, K.; Delord, K.; Weimerskirch, H.; Thiebot, J.-B.; Boulinier, T.; Tortosa, P.
10.1101/711283 — ecology — Posted on 2019-07-23
962 Global analysis of protein degradation in prion infected cells
Hutti, C. R.; Welle, K. A.; Hryhorenko, J. R.; Ghaemmaghami, S.
10.1101/712927 — biochemistry — Posted on 2019-07-23
963 Point-of-Use Detection of Environmental Fluoride via a Cell-Free Riboswitch-Based Biosensor
Thavarajah, W.; Silverman, A. D.; Verosloff, M. S.; Kelley-Loughnane, N.; Jewett, M. C.; Lucks, J. B.
10.1101/712844 — synthetic biology — Posted on 2019-07-23
964 Nanocatalytic activity of clean-surfaced, faceted nanocrystalline gold enhances remyelination in animal models of multiple sclerosis
Robinson, A. P.; Zhang, J. Z.; Titus, H. E.; Karl, M.; Merzliakov, M.; Dorfman, A. R.; Karlik, S.; Stewart, M. G.; Watt, R. K.; Facer, B. D.; Facer, J. D.; Christian, N. D.; Ho, K.; Hotchkin, M. T.; Mortenson, M. G.; Miller, R. H.; Miller, S. D.
10.1101/712919 — neuroscience — Posted on 2019-07-23
965 Hydrogen peroxide as regeneration-initiation signal that activates pERK to trigger planarian regeneration
Jaenen, V.; Fraguas, S.; Bijnens, K.; Vaca, M.; Artois, T.; Romero, R.; Smeets, K.; Cebria, F.
10.1101/712356 — developmental biology — Posted on 2019-07-23
966 Genetic algorithm-based personalized models of human cardiac action potential
Smirnov, D. N.; Syunyaev, R. A.; Deviatiiarov, R. M.; Gusev, O. A.; Aras, K. K.; Koppel, A. C.; Efimov, I. R.
10.1101/712406 — biophysics — Posted on 2019-07-23
967 A moment of change: shifts in myeloarchitecture characterise adolescent development of cortical gradients
Paquola, C.; Bethlehem, R. A.; Seidlitz, J.; Wagstyl, K.; Romero-Garcia, R.; Whitaker, K. J.; Vos De Wael, R.; Williams, G. B.; NSPN Consortium, ; Vertes, P. E.; Margulies, D. S.; Bernhardt, B. C.; Bullmore, E. T.
10.1101/706341 — neuroscience — Posted on 2019-07-23
968 Innovations in Primate Interneuron Repertoire
Krienen, F. M.; Goldman, M.; Zhang, Q.; del Rosario, R.; Florio, M.; Machold, R.; Saunders, A.; Levandowski, K.; Zaniewski, H.; Schuman, B.; Wu, C.; Lutservitz, A.; Mullally, C. D.; Reed, N.; Bien, E.; Bortolin, L.; Fernandez-Otero, M.; Lin, J.; Wysoker, A.; Nemesh, J.; Kulp, D.; Burns, M.; Tkachev, V.; Smith, R.; Walsh, C. A.; Dimidschstein, J.; Rudy, B.; Kean, L.; Berretta, S.; Fishell, G.; Feng, G.; McCarroll, S. A.
10.1101/709501 — neuroscience — Posted on 2019-07-23
970 Enhanced targeted resequencing by optimizing the combination of enrichment technology and DNA fragment length
Iadarola, B.; Xumerle, L.; Lavezzari, D.; Paterno, M.; Marcolungo, L.; Beltrami, C.; Fortunati, E.; Delledonne, M.
10.1101/712125 — genomics — Posted on 2019-07-23
973 Bacterially produced GABA protects neurons from degeneration
Urrutia, A.; Garcia, V.; Fuentes, A.; Caneo, M.; Legüe, M.; Urquiza, S.; Ugalde, J.; Burdisso, P.; Calixto, A.
10.1101/711887 — microbiology — Posted on 2019-07-23
974 The wild species genome ancestry of domestic chickens
Lawal, R. A.; Martin, S. H.; Vanmechelen, K.; Vereijken, A.; Silva, P.; Al-Atiyat, R. M.; Aljumaah, R. S.; Mwacharo, J. M.; Wu, D.-D.; Zhang, Y.-P.; Hocking, P. M.; Smith, J.; Wragg, D.; Hanotte, O.
10.1101/711366 — evolutionary biology — Posted on 2019-07-23
975 Genomic Retargeting of Tumor Suppressors p53 and CTCF Promotes Oncogenesis
Schwartz, M.; Sarusi Portugez, A.; Zukerman Attia, B.; Tannenbaum, M.; Loza, O.; Chase, A.; Turman, Y.; Kaplan, T.; Salah, Z.; Hakim, O.
10.1101/703124 — cell biology — Posted on 2019-07-23
976 Early-Career Coordinated Distributed Experiments: Empowerment Through Collaboration
Pastor, A.; Hernandez-del Amo, E.; Gimenez-Grau, P.; Fillol, M.; Pereda, O.; Flores, L.; Sanpera-Calbet, I.; Bravo, A. G.; Martin, E. J.; Poblador, S.; Arroita, M.; Rasines-Ladero, R.; Ruiz, C.; del Campo, R.; Abril, M.; Reyes, M.; Casas-Ruiz, J. P.; Fernandez, D.; Castro-Catala, N.; Tornero, I.; Palacin-Lizarbe, C.; Arce, M. I.; Mora-Gomez, J.; Gomez-Gener, L.; Monroy, S.; Freixa, A.; Lupon, A.; Gonzalez-Ferreras, A.-M.; Estevez, E.; Rodriguez-Lozano, P.; Solagaistua, L.; Rodriguez-Castillo, T.; Aristi, I.; Martinez, A.; Catalan, N.
10.1101/704502 — scientific communication and education — Posted on 2019-07-23
977 Actin modulates shape and mechanics of tubular membranes
Allard, A.; Bouzid, M.; Betz, T.; Simon, C.; Abou-Ghali, M.; Lemiere, J.; Valentino, F.; Manzi, J.; Brochard-Wyart, F.; Guevorkian, K.; Plastino, J.; Lenz, M.; Campillo, C.; Sykes, C.
10.1101/712505 — biophysics — Posted on 2019-07-23
978 Capillary morphogenesis gene 2 mediates multiple pathways of growth factor-induced angiogenesis by regulating endothelial cell chemotaxis
Cryan, L.; Tsang, T.-M.; Stiles, J.; Bazinet, L.; Lee, S.-L.; Garrard, S.; Roberts, C.; Payne, J.; Ackroyd, P. C.; Christensen, K. A.; Rogers, M.
10.1101/705442 — biochemistry — Posted on 2019-07-23
981 How range residency and long-range perception change encounter rates
Martinez-Garcia, R.; Fleming, C. H.; Seppelt, R.; Fagan, W.; Calabrese, J. M.
10.1101/712182 — ecology — Posted on 2019-07-23
982 The histone chaperone FACT induces Cas9 multi-turnover behavior and modifies genome manipulation in human cells
Wang, A. S.; Chen, L.; Wu, R. A.; Richardson, C. D.; Gowen, B. G.; Kazane, K. R.; Vu, J. T.; Wyman, S. K.; Shin, J.; Walter, J. C.; Corn, J.
10.1101/705657 — cell biology — Posted on 2019-07-23
984 Correcting index databases improves metagenomic studies
Meric, G.; Wick, R. R.; Watts, S. C.; Holt, K. E.; Inouye, M.
10.1101/712166 — bioinformatics — Posted on 2019-07-23
986 Impaired lysosomal acidification triggers iron deficiency, necrotic cell death and inflammation in vivo
Yambire, K. F.; Rostosky, C.; Watanabe, T.; Pacheu-Grau, D.; Torres-Odio, S.; Sanchez-Guerrero, A.; Senderovich, O.; Meyron-Holtz, E. G.; Milosevic, I.; Frahm, J.; West, A. P.; Raimundo, N.
10.1101/710798 — cell biology — Posted on 2019-07-23
990 Coronary arterial development is regulated by a Dll4-Jag1-EphrinB2 signaling cascade
de la Pompa Minguez, J. L.; Travisano, S. I.; Oliveira, V. L.; Prados, B.; Grego-Bessa, J.; Bou, V.; Gomez, M. J.; Sanchez-Cabo, F.; MacGrogan, D.
10.1101/711333 — developmental biology — Posted on 2019-07-23
991 Yellow fever virus spread in Rio de Janeiro and Espirito Santo, 2016-2019: Phylodynamic assessment to improve intervention strategies
Giovanetti, M.; Lima de Mendonca, M. C.; Fonseca, V.; Mares-Guia, M. A.; Fabri, A.; Xavier, J.; Goes de Jesus, J.; Gräf, T.; Damasceno dos Santos Rodrigues, C.; Cardoso dos Santos, C.; Alves Sampaio, S.; Lowen Levy Chalhoub, F.; Bruycker Nogueira, F.; Theze, J.; Pecego Martins Romano, A.; Garkauskas Ramos, D.; Luiz de Abreu, A.; Kleber Oliveira, W.; do Carmo Said, R. F.; Campelo de Alburque, C. F.; de Oliveira, T.; Fernandes, C.; Ferreira Aguiar, S.; Chieppe, A.; Carvalho Sequeira, P.; Rodrigues Faria, N.; Venancio Cunha, R.; Alcantara, L. C. J.; Bispo de Filippis, A. M.
10.1101/711994 — microbiology — Posted on 2019-07-23
995 A comparison of resting state EEG and structural MRI for classifying Alzheimer’s disease and mild cognitive impairment
Farina, F. R.; Emek-Savas, D. D.; Rueda-Delgado, L.; Boyle, R.; Kiiski, H.; Yener, G.; Whelan, R.
10.1101/711465 — neuroscience — Posted on 2019-07-23
999 In situ miRNA delivery from a hydrogel promotes osteogenesis of encapsulated mesenchymal stromal cells
Carthew, J.; Donderwinkel, I.; Shrestha, S.; Truong, V. X.; Forsythe, J. S.; Frith, J. E.
10.1101/712042 — bioengineering — Posted on 2019-07-23
1004 Arl13b regulates Sonic Hedgehog signaling from outside primary cilia
Gigante, E. D.; Taylor, M. R.; Ivanova, A. A.; Kahn, R. A.; Caspary, T.
10.1101/711671 — developmental biology — Posted on 2019-07-23
1008 Dopamine and motivational state drive dynamics of human decision making
Le Heron, C.; Kolling, N.; Plant, O.; Kienast, A.; Janska, R.; Ang, Y. S.; Fallon, S.; Husain, M.; Apps, M.
10.1101/709857 — neuroscience — Posted on 2019-07-23
1010 Infant diet promotes Bifidobacterium community cooperation within a single ecosystem
Lawson, M. A.; O'Neill, I. J.; Kujawska, M.; Wijeyesekera, A.; Flegg, Z.; Chalklen, L.; Hall, L. J.
10.1101/711234 — microbiology — Posted on 2019-07-23
1011 Functional annotation of rare structural variation in the human brain
Han, L.; Zhao, X.; Benton, M. L.; Perumal, T.; Collins, R.; Hoffman, G.; Johnson, J.; Sloofman, L.; Wang, H.; Consortium, C.; Brennand, K.; Brand, H.; Sieberts, S.; Marenco, S.; Peters, M.; Lipska, B.; Roussos, P.; Capra, J.; Talkowski, M.; Ruderfer, D.
10.1101/711754 — genomics — Posted on 2019-07-23
1012 Cooption and Specialization of Endothelin Signaling Pathways Drove Elaboration of the Neural Crest in Early Vertebrates
Square, T. A.; Jandzik, D.; Massey, J. L.; Romasek, M.; Stein, H. P.; Hansen, A. W.; Purkayastha, A.; Cattell, M. V.; Medeiros, D. M.
10.1101/710475 — developmental biology — Posted on 2019-07-23
1013 BET inhibition induces an anti-apoptotic adaptive response and therapeutic vulnerability to MCL1 inhibitors in breast cancer
Yan, G.; Wang, H.; Luna, A.; Bozorgui, B.; Li, X.; Dereli, Z.; Chen, X.; Lu, Y.; Babur, O.; Sander, C.; Mills, G.; Korkut, A.
10.1101/711895 — cancer biology — Posted on 2019-07-23
1015 ADCK4 deficiency destabilizes the coenzyme Q complex, which is rescued by 2,4-dihydroxybenzoic acid treatment
Widmeier, E.; Yu, S.; Nag, A.; Chung, Y. W.; Nakayama, M.; Hugo, H.; Buerger, F.; Schapiro, D.; Choi, W.-I.; Kim, J.-w.; Ryu, J.-H.; Lee, M. G.; Clarke, C. F.; Hildebrandt, F.; Gee, H. Y.
10.1101/712323 — genetics — Posted on 2019-07-23
1018 Rational Design of a Bifunctional AND-Gate Ligand to Modulate Cell-Cell Interactions
Lee, J.; Vernet, A.; Redfield, K.; Lu, S.; Ghiran, I. C.; Way, J. C.; Silver, P. A.
10.1101/711549 — synthetic biology — Posted on 2019-07-23
1019 Genetic risk for Alzheimer`s disease predicts hippocampal volume through the lifespan
Walhovd, K. B.; Fjell, A. M.; Sorensen, O.; Mowinckel, A. M.; Reinbold, C. S.; Idland, A.-V.; Watne, L. O.; Franke, A.; Dobricic, V.; Kilpert, F.; Bertram, L.; Wang, Y.
10.1101/711689 — neuroscience — Posted on 2019-07-23
1020 Tropomyosin Tpm3.1 is required to maintain the structure and function of the axon initial segment
Abouelezz, A.; Stefen, H.; Segerstrale, M.; Micinski, D.; Minkeviciene, R.; Hardeman, E. C.; Gunning, P. W.; Hoogenraad, C.; Taira, T.; Fath, T.; Hotulainen, P.
10.1101/711614 — neuroscience — Posted on 2019-07-23
1022 Regulation of neuronal mRNA splicing and Tau isoform ratio by ATXN3 through deubiquitylation of splicing factors
Neves-Carvalho, A.; Duarte-Silva, S.; Silva, J.; Almeida, B.; Heetveld, S.; Sotiropoulos, I.; Heutink, P.; Li, K. W.; Maciel, P.
10.1101/711424 — neuroscience — Posted on 2019-07-23
1023 Single-cell profiles of retinal neurons differing in resilience to injury reveal neuroprotective genes
Tran, N. M.; Shekhar, K.; Whitney, I. E.; Jacobi, A.; Benhar, I.; Hong, G.; Yan, W.; Adiconis, X.; Arnold, M. E.; Lee, J. M.; Levin, J. Z.; Lin, D.; Wang, C.; Lieber, C. M.; Regev, A.; He, Z.; Sanes, J. R.
10.1101/711762 — neuroscience — Posted on 2019-07-23
1026 Targeting tRNA-Synthetase Interactions towards Novel Therapeutic Discovery Against Eukaryotic Pathogens
Kelly, P.; Hadi-Nezhad, F.; Liu, D.; Lawrence, T. J.; Linington, R. J.; Ibba, M.; Ardell, D. H.
10.1101/711697 — microbiology — Posted on 2019-07-23
1032 Disentangling causal relationships between inflammatory markers and depression: a bidirectional Mendelian randomization analysis
Dardani, C.; Yarmolinsky, J.; Robinson, J.; Zheng, J.; Davey Smith, G.; Lewis, S. J.; Sinclair, L. I.
10.1101/712133 — genomics — Posted on 2019-07-23
1035 Hot and sick: impacts of warming and oomycete parasite infection on endemic dominant zooplankter of Lake Baikal.
Ozersky, T.; Nakov, T.; Hampton, S.; Rodenhouse, N. L.; Shchapov, K.; Woo, K. H.; Wright, K.; Pislegina, H.; Izmest'eva, L. R.; Silow, E. A.; Timofeev, M. A.; Moore, M. V.
10.1101/711655 — ecology — Posted on 2019-07-23
1037 Long-term protection of rhesus macaques from Zika virus reinfection
Moreno, G. K.; Newman, C. M.; Koenig, M. R.; Mohns, M. S.; Weiler, A. M.; Rybarczyk, S. L.; Vosler, L. J.; Pomplun, N. L.; Schultz-Darken, N.; Rakasz, E.; Dudley, D. M.; Friedrich, T. C.; O'Connor, D. H.
10.1101/712281 — immunology — Posted on 2019-07-23
1041 Cardiovascular parameters in capitive blue-fronted amazon parrots (Amazona aestiva, Linnaeus, 1758) with varying body condition scores
Santos, G. J. d.; Aleixo, A. S. C.; Silva, J. P. D.; Hippolito, A. G.; Ferro, B. S.; Oliveira, E. L. R.; Okamoto, P. T. C. G.; Lourenco, M. L. G.; Machado, V. M. d. V.; Melchert, A.
10.1101/712273 — physiology — Posted on 2019-07-23
1045 Minor QTLs mining through the combination of GWAS and machine learning feature selection
Huang, X.; Zhou, W.; Bellis, E. S.; Stubblefield, J.; Causey, J.; Qualls, J.; Walker, K.
10.1101/712190 — bioinformatics — Posted on 2019-07-23
1047 Altered frequency of CD24highCD38high transitional B cells in patients with cardiac involvement of chronic Chagas disease.
Girard, M. C.; Acevedo, G. R.; Ossowski, M. S.; Alcaraz, P. B.; Fernandez, M.; Hernandez, Y.; Chadi, R.; Gomez, K. A.
10.1101/684589 — immunology — Posted on 2019-07-22
1048 Multicellular tumor spheroids- an effective in vitro model for understanding drug resistance in head and neck cancer
Azharuddin, M.; Roberg, K.; Dhara, A. K.; Jain, M. V.; Darcy, P.; Hinkula, J.; Slater, N. K. H.; Patra, H. K.
10.1101/702316 — cancer biology — Posted on 2019-07-22
1050 Environmentally induced lipidome adaptation in the bacterial model organism M. extorquens
Chwastek, G.; Surma, M. A.; Rizk, S.; Grosser, D.; Lavrynenko, O.; Rucinska, M.; Jambor, H.; Saenz, J. P.
10.1101/650390 — biochemistry — Posted on 2019-07-22
1051 What is the test-retest reliability of common task-fMRI measures? Newempirical evidence and a meta-analysis
Elliott, M. L.; Knodt, A. R.; Ireland, D.; Morris, M. L.; Polton, R.; Ramrakha, S.; Sison, M. L.; Moffitt, T. E.; Caspi, A.; Hariri, A.
10.1101/681700 — neuroscience — Posted on 2019-07-22
1053 The GATA transcription factor Gaf1 represses tRNA genes, inhibits growth, and extends chronological lifespan downstream of fission yeast TORC1
Rodriguez-Lopez, M.; Gonzalez, S.; Hillson, O.; Tunnacliffe, E.; Codlin, S.; Tallada, V.; Bahler, J.; Rallis, C.
10.1101/700286 — genetics — Posted on 2019-07-22
1054 ATP7B Variant c.1934T>G p.Met645Arg Causes Wilson Disease by Promoting Exon 6 Skipping
Merico, D.; Spickett, C.; O'Hara, M.; Kakaradov, B.; Deshwar, A.; Fradkin, P.; Gandhi, S.; Gao, J.; Grant, S.; Schmitges, F. W.; Sun, M.; Shalev, Z.; Cahill, M.; Dowling, J. J.; Fransson, J.; Wienholds, E.; Frey, B. J.
10.1101/693572 — genetics — Posted on 2019-07-22
1055 Evolved for success in novel environments: the round goby genome
Adrian-Kalchhauser, I.; Blomberg, A.; Larsson, T.; Musilova, Z.; Peart, C. R.; Pippel, M.; Hongroe Solbakken, M.; Suurvaeli, J.; Walser, J.-C.; Wilson, J. Y.; Alm Rosenblad, M.; Burguera, D.; Gutnik, S.; Michiels, N.; Toelpel, M.; Pankov, K.; Schloissnig, S.; Winkler, S.
10.1101/708974 — ecology — Posted on 2019-07-22
1056 A missense mutation dissociates triglyceride and phospholipid transfer activities in zebrafish and human microsomal triglyceride transfer protein
Wilson, M. H.; Rajan, S.; Danoff, A.; White, R. J.; Hensley, M. R.; Quinlivan, V. H.; Thierer, J. H.; Busch-Nentwich, E. M.; Hussain, M. M.; Farber, S. A.
10.1101/701813 — physiology — Posted on 2019-07-22
1057 A Willow Sex Chromosome Reveals Convergent Evolution of Complex Palindromic Repeats
Zhou, R.; Macaya-Sanz, D.; Carlson, C. H.; Schmutz, J.; Jenkins, J. W.; Kudrna, D.; Sharma, A.; Sandor, L.; Shu, S.; Barry, K.; Tuskan, G. A.; Ma, T.; Liu, J.; Olson, M.; Smart, L. B.; DiFazio, S.
10.1101/710046 — genomics — Posted on 2019-07-22
1062 Lake overturn as a key driver for methane oxidation
Zimmermann, M.; Mayre, M.; Bouffard, D.; Eugster, W.; Steinsberger, T.; Wehrli, B.; Brand, A.; Buergmann, H.
10.1101/689182 — microbiology — Posted on 2019-07-22
1071 Do direct nose-to-brain pathways underlie intranasal oxytocin-induced changes in regional cerebral blood flow in humans?
Martins, D.; Mazibuko, N.; Zelaya, F.; Vasilakopoulou, S.; Loveridge, J.; Oates, A.; Maltezos, S.; Mehta, M.; Howard, M.; McAlonan, G.; Murphy, D.; Williams, S.; Fotopoulou, A.; Schuschnig, U.; Paloyelis, Y.
10.1101/563056 — neuroscience — Posted on 2019-07-22
1072 Beyond SNP Heritability: Polygenicity and Discoverability of Phenotypes Estimated with a Univariate Gaussian Mixture Model
Holland, D.; Frei, O.; Desikan, R.; Fan, C.-C.; Shadrin, A. A.; Smeland, O. B.; Sundar, V. S.; Thompson, P.; Andreassen, O. A.; Dale, A. M.
10.1101/133132 — genomics — Posted on 2019-07-22
1074 The proteasome regulator PI31 is required for protein homeostasis, synapse maintenance and neuronal survival in mice
Minis, A.; Rodriguez, J. A.; Levin, A.; Liu, K.; Govek, E.-E.; Hatten, M. E.; Steller, H.
10.1101/711515 — neuroscience — Posted on 2019-07-22
1075 The apical annuli of Toxoplasma gondii are composed of coiled-coil and signaling proteins embedded in the IMC sutures
Engelberg, K.; Chen, C.-T.; Bechtel, T.; Sanchez Guzman, V.; Drozda, A. A.; Chavan, S.; Weerapana, E.; Gubbels, M.-J.
10.1101/711432 — cell biology — Posted on 2019-07-22
1076 Exploring the design space of recombinase logic circuits.
Guiziou, S.; Perution-Kihli, G.; Ulliana, F.; Leclere, M.; Bonnet, J.
10.1101/711374 — synthetic biology — Posted on 2019-07-22
1078 Detection of novel allelic variations in soybean mutant population using Tilling by Sequencing
Millas, R.; Espina, M. J.; Ahmed, C. S.; Bernardini, A.; Adeleke, E.; Yadegari, Z.; Dumenyo, K.; Taheri, A.
10.1101/711440 — plant biology — Posted on 2019-07-22
1082 A landmark-free morphometric pipeline: Application to characterise a Down syndrome model skull phenotype
Toussaint, N.; Redhead, Y.; Liu, W.; Fisher, E.; Hallgrimsson, B.; Tybulewicz, V.; Green, J. B. A.; Schnabel, J.
10.1101/711259 — genetics — Posted on 2019-07-22
1084 Evidence that the TRPV1 S1-S4 Membrane Domain Contributes to Thermosensing
Kim, M.; Sisco, N. J.; Hilton, J. K.; Montano, C. M.; Castro, M. A.; Cherry, B. R.; Levitus, M.; Van Horn, W. D.
10.1101/711499 — biochemistry — Posted on 2019-07-22
1085 A humanized yeast phenomic model of deoxycytidine kinase to predict genetic buffering of nucleoside analog cytotoxicity
Santos, S. M.; Icyuz, M.; Pound, I.; William, D.; Guo, J.; McKinney, B. A.; Niederweis, M.; Rodgers, J. W.; Hartman, J. L.
10.1101/700153 — systems biology — Posted on 2019-07-22
1086 Neuromagnetic activation dynamics of stimulus-locked processing during a naturalistic viewing
Nunes, A.; Kozhemiako, N.; Moiseev, A.; Seymour, R. A.; Cheung, T. P. L.; Ribary, U.; Doesburg, S. M.
10.1101/711457 — neuroscience — Posted on 2019-07-22
1088 Sex Differences in Predictors of Seizure in Contrast-Enhancing Gliomas at Clinical Presentation: A Network Approach
Johnston, S. K.; Khurana, A.; Whitmire, P.; Ranjbar, S.; Sharma, A.; Hawkins-Daarud, A.; Rubin, J. B.; Porter, A. B.; Canoll, P. D.; Egan, K.; Hu, L. S.; Mrugala, M. M.; Kumthekar, P.; Swanson, K. R.
10.1101/708032 — cancer biology — Posted on 2019-07-22
1090 Addressing lipid structural diversity in signalling: Photochemical probes for live-cell lipid biochemistry
Schuhmacher, M.; Grasskamp, A. T.; Wagner, N.; Lombardot, B.; Schuhmacher, J. S.; Sala, P.; Lohmann, A.; Henry, I.; Shevchenko, A.; Coskun, U.; Walter, A. M.; Nadler, A.
10.1101/711291 — biochemistry — Posted on 2019-07-22
1092 Mutations in CalDAG-GEFI Lead to Striatal Signaling Deficits and Psychomotor Symptoms in Multiple Species Including Human
Crittenden, J. R.; Sauvage, M.; Kitsukawa, T.; Burguiere, E.; Cepeda, C.; Andre, V. M.; Canault, M.; Thomsen, M.; Zhang, H.; Costa, C.; Martella, G.; Ghiglieri, V.; Pescatore, K. A.; Unterwald, E. M.; Jackson, W.; Housman, D. E.; Caine, S. B.; Sulzer, D.; Calabresi, P.; Levine, M. S.; Brefel-Courbon, C.; Smith, A. C.; Alessi, M.-C.; Azulay, J.-P.; Graybiel, A. M.
10.1101/709246 — neuroscience — Posted on 2019-07-22
1093 CBP80/20-dependent translation initiation factor (CTIF) inhibits HIV-1 Gag synthesis by targeting the function of the viral protein Rev
Garcia-de-Gracia, F.; Toro-Ascuy, D.; Riquelme-Barrios, S.; Pereira-Montecinos, C.; Rojas-Araya, B.; Gaete-Argel, A.; Acevedo, M. L.; Chnaiderman, J.; Valiente-Echeverria, F.; Soto-Rifo, R.
10.1101/710137 — microbiology — Posted on 2019-07-22
1095 Quantitative Immunology for Physicists
Altan-Bonnet, G.; Mora, T.; Walczak, A. M.
10.1101/696567 — immunology — Posted on 2019-07-22
1096 Regulatory T cells control the dynamic and site-specific T helper bias following Salmonella infection
Clay, S. L.; Bravo-Blas, A.; Wall, D. M.; MacLeod, M. K. L.; Milling, S. W. F.
10.1101/710665 — immunology — Posted on 2019-07-22
1097 Nano-twines to twine-bridges: Role of force exerting perpendicular lateral protrusions in fibroblastic cell contraction
Padhi, A.; Singh, K.; Franco-Barraza, J.; Marston, D.; Hahn, K. M.; Cukierman, E.; Kapania, R.; Nain, A. S.
10.1101/711507 — cell biology — Posted on 2019-07-22
1099 MGSE regulates crosstalk from the mucin pathway to the TFE3 pathway of the Golgi stress response
Jamaludin, M. I.; Wakabayashi, S.; Sasaki, K.; Komori, R.; Kawamura, H.; Takase, H.; Sakamoto, M.; Yoshida, H.
10.1101/710616 — cell biology — Posted on 2019-07-22
1101 Genetic correlation between background EEG oscillations and genetic generalized epilepsy
Stevelink, R.; Luykx, J. J.; Lin, B.; Leu, C.; Lal, D.; Smith, A.; Schijven, D.; Carpay, J.; Rademaker, K.; Baldez, R.; Braun, K.; Jansen, F.; Epi25 Collaborative, ; ILAE Consortium, ; Smit, D.; Koeleman, B.
10.1101/711200 — genetics — Posted on 2019-07-22
1102 Altering microtubule dynamics is synergistically toxic with inhibition of the spindle checkpoint
Schukken, K. M.; Lin, Y.-C.; Schubert, M.; Preuss, S. F.; Simon, J. E.; van den Bos, H.; Storchova, Z.; Bastians, H.; Spierings, D. C. J.; Foijer, F.
10.1101/706077 — cancer biology — Posted on 2019-07-22
1103 Global genome diversity of the Leishmania donovani complex
Franssen, S. U.; Durrant, C.; Stark, O.; Moser, B.; Downing, T.; Imamura, H.; Dujardin, J.-C.; Sanders, M. J.; Mauricio, I.; Miles, M. A.; Schnur, L. F.; Jaffe, C. L.; Nasereddin, A.; Schallig, H.; Yeo, M.; Bhattacharyya, T.; Alam, M. Z.; Berriman, M.; Wirth, T.; Schönian, G.; Cotton, J. A.
10.1101/710145 — genomics — Posted on 2019-07-22
1107 Enzyme annotation in UniProtKB using Rhea
Morgat, A.; Lombardot, T.; Coudert, E.; Axelsen, K.; Neto, T. B.; Gehant, S.; Bansal, P.; Bolleman, J.; Gasteiger, E.; de Castro, E.; Baratin, D.; Pozzato, M.; Xenarios, I.; Poux, S.; Redaschi, N.; Bridge, A.; The UniProt Consortium,
10.1101/709899 — bioinformatics — Posted on 2019-07-22
1108 PIN FORMED 2 facilitates the transport of Arsenite in Arabidopsis thaliana
shraf, M. A.; Umetsu, K.; Ponomarenko, O.; Saito, M.; Aslam, M.; Antipova, O.; Dolgova, N.; Kiani, C. D.; Nezhati, S.; Tanoi, K.; Minegishi, K.; Nagatsu, K.; Kamiya, T.; Fujiwara, T.; Luschnig, C.; Tanino, K.; Pickering, I.; George, G. N.; Rahman, A.
10.1101/710160 — plant biology — Posted on 2019-07-22
1110 Centrioles control the capacity, but not the specificity, of cytotoxic T cell killing
Tamzalit, F.; Tran, D.; Jin, W.; Boyko, V.; Bazzi, H.; Kepecs, A.; Kam, L. C.; Anderson, K. V.; Huse, M.
10.1101/710053 — immunology — Posted on 2019-07-22
1112 PPM1H phosphatase counteracts LRRK2 signaling by selectively dephosphorylating Rab proteins
Berndsen, K.; Lis, P.; Yeshaw, W.; Wawro, P. S.; Nirujogi, R. S.; Wightman, M.; Macartney, T.; Dorward, M.; Knebel, A.; Tonelli, F.; Pfeffer, S. R.; Alessi, D. R.
10.1101/711176 — biochemistry — Posted on 2019-07-22
1114 Composition and Diversity of CRISPR-Cas13a systems in the genus Leptotrichia
Watanabe, S.; Cui, B.; Kiga, K.; Aiba, Y.; Tan, X.-E.; Sato'o, Y.; Kawauchi, M.; Boonsiri, T.; Thitiananpakorn, K.; Taki, Y.; Li, F.-Y.; Azam, A. H.; Nakada, Y.; Sasahara, T.; Cui, L.
10.1101/710533 — microbiology — Posted on 2019-07-22
1115 The Autoimmune Susceptibility Gene, PTPN2, Restricts Expansion of a Novel Mouse Adherent-Invasive E. coli
Shawki, A.; Alvarez, R.; Spalinger, M. R.; Ruegger, P. M.; Sayoc, A.; Santos, A. N.; Chatterjee, P.; Mitchell, J.; Macbeth, J.; Tremblay, M. L.; Hsiao, A.; Borneman, J.; McCole, D. F.
10.1101/709634 — microbiology — Posted on 2019-07-22
1116 Large-scale GWAS in sorghum reveals common genetic control of grain size among cereals
Tao, Y.; Zhao, X.; Wang, X.; Hathorn, A.; Hunt, C.; Cruickshank, A.; Van Oosterom, E.; Godwin, I.; Mace, E.; Jordan, D.
10.1101/710459 — genetics — Posted on 2019-07-22
1119 Transcriptome-wide sites of collided ribosomes reveal principles of translational pausing
Arpat, A. B.; Liechti, L. A.; De Matos, M.; Dreos, R.; Janich, P.; Gatfield, D.
10.1101/710061 — cell biology — Posted on 2019-07-22
1121 Progressive shifts in the gut microbiome reflect prediabetes and diabetes development in a treatment-naive Mexican cohort
Diener, C.; Reyes, L.; Jimenez, L.; Matus, M. G.; Gomez, C.; Chu, N. D.; Zhong, V.; Tejero, E.; Alm, E. J.; Resendis-Antonio, O.; Guardado-Mendoza, R.
10.1101/710152 — systems biology — Posted on 2019-07-22
1122 Shade-avoidance responses become more aggressive in warm environments
Romero-Montepaone, S.; Poodts, S.; Fischbach, P.; Sellaro, R.; Zurbriggen, M. D.; Casal, J.
10.1101/710004 — plant biology — Posted on 2019-07-22
1124 Evidence that APP gene copy number changes reflect recombinant vector contamination
Kim, J.; Zhao, B.; Huang, A. Y.; Miller, M. B.; Lodato, M. A.; Walsh, C. A.; Lee, E. A.
10.1101/706788 — genomics — Posted on 2019-07-22
1126 Interspecific social interactions shape public goods production in natural microbial communities
Hesse, E.; O'Brien, S.; Lujan, A.; Bayer, F.; van Veen, E.; Hodgson, D.; Buckling, A.
10.1101/710715 — evolutionary biology — Posted on 2019-07-22
1127 Viruses of the eukaryotic plankton are predicted to increase carbon export efficiency in the global sunlit ocean
Blanc-Mathieu, R.; Kaneko, H.; Endo, H.; Chaffron, S.; Hernandez Velazquez, R.; Nguyen, C. H.; Mamitsuka, H.; Henry, N.; de Vargas, C.; Sullivan, M. B.; Suttle, C. A.; Guidi, L.; Ogata, H.
10.1101/710228 — ecology — Posted on 2019-07-22
1128 Stable Biomarker Identification For Predicting Schizophrenia in the Human Connectome
Gutierrez-Gomez, L.; Vohryzek, J.; Chiem, B.; Baumann, P.; Conus, P.; Do Cuenod, K. Q.; Hagmann, P.; Delvenne, J.-C.
10.1101/711135 — neuroscience — Posted on 2019-07-22
1129 Genome-wide survey of ribosome collision
Han, P.; Mito, M.; Shichino, Y.; Hashimoto, S.; Udagawa, T.; Kohno, K.; Mishima, Y.; Inada, T.; Iwasaki, S.
10.1101/710491 — molecular biology — Posted on 2019-07-22
1133 Caspase-8 Modulates Angiogenesis By Regulating A Cell Death Independent Pathway In Endothelial Cells
Tisch, N.; Freire-Valls, A.; Yerbes, R.; Paredes, I.; La Porta, S.; Wang, X.; Martin-Perez, R.; Castro, L.; Wei-Lynn Wong, W.; Coultas, L.; Strilic, B.; Groene, H.-J.; Hielscher, T.; Mogler, C.; Adams, R.; Heiduschka, P.; Claesson-Welsh, L.; Mazzone, M.; Lopez-Rivas, A.; Schmidt, T.; Augustin, H.; Ruiz de Almodovar, C.
10.1101/708651 — developmental biology — Posted on 2019-07-22
1139 In Vivo Large Scale Mapping Of Protein Turnover In The Human Cerebrospinal Fluid
Lehmann, S.; Hirtz, C.; Vialaret, J.; Ory, M.; Gras Combes, G.; Le Corre, M.; Badiou, S.; Christol, J.-P.; Hanon, O.; Cornillot, E.; Bauchet, L.; Gabelle, A.; Colinge, J.
10.1101/710418 — systems biology — Posted on 2019-07-22
1141 Altered stomatal patterning accompanies a trichome dimorphism in a natural population of Arabidopsis
Simon, N. M.; Sugisaka, J.; Honjo, M. N.; Aarseth Tunstad, S.; Tunna, G.; Kudoh, H.; Dodd, A. N.
10.1101/710889 — plant biology — Posted on 2019-07-22
1143 Origination of the circadian clock system in stem cells regulates cell differentiation in Arabidopsis thaliana.
Torii, K.; Inoue, K.; Bekki, K.; Haraguchi, K.; Kubo, M.; Kondo, Y.; Suzuki, T.; Shimizu, H.; Uemoto, K.; Saito, M.; Fukuda, H.; Araki, T.; Endo, M.
10.1101/710590 — plant biology — Posted on 2019-07-22
1146 The Effects of Host Taxon, Hybridization, and Environment on the Gut Microbiome of Callithrix Marmosets
Malukiewicz, J.; Cartwright, R. A.; Dergam, J. A.; Igayara, C. S.; Kessler, S.; Moreira, S. B.; Nash, L. T.; Nicola, P. A.; Pereira, L. C. M.; Pissinati, A.; Ruiz-Miranda, C. R.; Ozga, A. T.; Roos, C.; Silva, D. L.; Stone, A. C.; Grativol, A. D.
10.1101/708255 — microbiology — Posted on 2019-07-22
1148 MUC5AC drives COPD exacerbation severity through amplification of virus-induced airway inflammation
Singanayagam, A.; Footitt, J.; Kasdorf, B. T.; Marczynski, M.; Cross, M. T.; Finney, L. J.; Trujillo Torralbo, M.-B.; Calderazzo, M.; Zhu, J.; Aniscenko, J.; Clarke, T. B.; Molyneaux, P. L.; Bartlett, N. W.; Moffatt, M. F.; Cookson, W. O.; Wedzicha, J.; Evans, C. M.; Lieleg, O.; Mallia, P.; Johnston, S. L.
10.1101/706804 — immunology — Posted on 2019-07-22
1150 A direct role for SNX9 in the biogenesis of filopodia
Jarsch, I. K.; Gadsby, J. R.; Nuccitelli, A.; Mason, J.; Shimo, H.; Pilloux, L.; Marzook, B.; Mulvey, C. M.; Dobramysl, U.; Lilley, K. S.; Hayward, R. D.; Vaughan, T. J.; Dobson, C. L.; Gallop, J. L.
10.1101/710285 — cell biology — Posted on 2019-07-22
1152 Universal activation mechanism of class A GPCRs
Zhao, S.; Wang, M.-W.; Babu, M.; Stevens, R. C.; Liu, Z.-J.; Shakhnovich, E. I.; Dai, A.; Cai, X.; Zhong, L.; Guo, W.; Guo, Y.; Wu, M.; Yang, D.; Zhou, Q.
10.1101/710673 — bioinformatics — Posted on 2019-07-22
1157 Myo-REG: a portal for signaling interactions in muscle regeneration
Palma, A.; Calderone, A.; Cerquone Perpetuini, A.; Ferrentino, F.; Fuoco, C.; Gargioli, C.; Giuliani, G.; Iannuccelli, M.; Licata, L.; Micarelli, E.; Paoluzi, S.; Perfetto, L.; Petrilli, L. L.; Reggio, A.; Rosina, M.; Sacco, F.; Vumbaca, S.; Zuccotti, A.; Castagnoli, L.; Cesareni, G.
10.1101/711168 — bioinformatics — Posted on 2019-07-22
1159 Deep Neural Networks and Kernel Regression Achieve Comparable Accuracies for Functional Connectivity Prediction of Behavior and Demographics
He, T.; Kong, R.; Holmes, A.; Nguyen, M.; Sabuncu, M.; Eickhoff, S. B.; Bzdok, D.; Feng, J.; Yeo, B. T. T.
10.1101/473603 — neuroscience — Posted on 2019-07-22
1160 A Membrane-Targeted Photoswitch Potently Modulates Neuronal Firing
DiFrancesco, M. L.; Lodola, F.; Colombo, E.; Maragliano, L.; Paterno, G. M.; Bramini, M.; Cimo, S.; Colella, L.; Fazzi, D.; Eleftheriou, C. G.; Maya-Vetencourt, J. F.; Bertarelli, C.; Lanzani, G.; Benfenati, F.
10.1101/711077 — neuroscience — Posted on 2019-07-22
1161 Caffeine consumption during pregnancy accelerates the development of cognitive deficits in offspring in a model of tauopathy
Bernard, C.; Zappettini, S.; Faivre, E.; Ghestem, A.; Carrier, S.; Buee, L.; Blum, D.; Esclapez, M.
10.1101/710749 — neuroscience — Posted on 2019-07-22
1162 Activity in the left amygdala in response to foods differs depending on the emotional context
Garcia-Garcia, I.; Kube, J.; Morys, F.; Schrimpf, A.; Kanaan, A. S.; Gaebler, M.; Villringer, A.; Dagher, A.; Horstmann, A.; Neumann, J.
10.1101/707844 — neuroscience — Posted on 2019-07-22
1165 The Histone H3-H4 Tetramer is a Copper Reductase Enzyme
Attar, N.; Campos, O. A.; Vogelauer, M.; Cheng, C.; Xue, Y.; Schmollinger, S.; Mallipeddi, N. V.; Boone, B. A.; Yen, L.; Yang, S.; Zikovich, S.; Dardine, J.; Carey, M. F.; Merchant, S. S.; Kurdistani, S. K.
10.1101/350652 — molecular biology — Posted on 2019-07-22
1166 Globally elevating the AGE clearance receptor, OST48, does not protect against the development of diabetic kidney disease, despite improving insulin secretion.
Zhuang, A.; Yap, F. Y.; McCarthy, D.; Leung, S. S.; Penfold, S. A.; Leung, C.; Sourris, K. C.; Harcourt, B.; Thallas-Bonke, V.; Coughlan, M. T.; Schulz, B.; Forbes, J.
10.1101/710558 — molecular biology — Posted on 2019-07-22
1167 Early fate of exogenous promoters in E. coli
Yousuf, M.; Iuliani, I.; T. Veetil, R.; Sai Narain Seshasayee, A.; Sclavi, B.; Cosentino Lagomarsino, M.
10.1101/710772 — genomics — Posted on 2019-07-22
1170 The first finding of lichen Solorina saccata at an algific talus slope in Korea
Park, J. S.; Kim, K.-H.; Kim, D.-K.; Kim, C. S.; Park, S.-Y.; Oh, S.-O.
10.1101/710947 — ecology — Posted on 2019-07-22
1171 A catalog of cis-regulatory mutations in 12 major cancer types
Cheng, Z.; Vermeulen, M.; Rollins-Green, M.; DeVeale, B.; Babak, T.
10.1101/710103 — genomics — Posted on 2019-07-22
1172 Acidic fibroblast growth factor underlies microenvironmental regulation of MYC in pancreatic cancer
Bhattacharyya, S.; Oon, C.; Kothari, A.; Horton, W.; Link, J.; Sears, R. C.; Sherman, M. H.
10.1101/709261 — cancer biology — Posted on 2019-07-22
1174 Intricate genetic programs controlling dormancy in Mycobacterium tuberculosis
Abidi, A. A.; Peterson, E. J. R.; Arrieta-Ortiz, M. L.; Aguilar, B.; Yurkovich, J. T.; Kaur, A.; Pan, M.; Srinivas, V.; Shmulevich, I.; Baliga, N. S.
10.1101/709378 — systems biology — Posted on 2019-07-22
1179 INTERACTION BETWEEN PLOIDY, BREEDING SYSTEM, AND LINEAGE DIVERSIFICATION
Zenil-Ferguson, R.; Burleigh, G.; Igic, B.; Freyman, W. A.; Mayrose, I.; Goldberg, E. E.
10.1101/709329 — evolutionary biology — Posted on 2019-07-22
1181 Injection molded open microfluidic well plate inserts for user-friendly coculture and microscopy
Day, J. H.; Nicholson, T.; Su, X.; Van Neel, T.; Clinton, I.; Kothandapani, A.; Lee, J.; Greenberg, M.; Amory, J.; Walsh, T.; Muller, C.; Franco, O.; Jefcoate, C.; Crawford, S.; Jorgensen, J.; Theberge, A.
10.1101/709626 — bioengineering — Posted on 2019-07-22
1184 Independent domestication events in the blue-cheese fungus Penicillium roqueforti
Dumas, E.; Feurtey, A.; Rodriguez de la Vega, R. C.; Le Prieur, S.; Snirc, A.; Coton, M.; Thierry, A.; Coton, E.; Le Piver, M.; Roueyre, D.; Ropars, J.; Branca, A.; Giraud, T.
10.1101/451773 — evolutionary biology — Posted on 2019-07-22
1186 A Non-Synonymous SHARPIN Variant is Associated with Limbic Degeneration and Family History of Alzheimer’s Disease
Soheili-Nezhad, S.; Jahanshad, N.; Guelfi, S.; Khosrowabadi, R.; Saykin, A. J.; Thompson, P. M.; Beckmann, C. F.; Sprooten, E.; Zarei, M.
10.1101/196410 — neuroscience — Posted on 2019-07-22
1187 Quantitative three-dimensional nondestructive imaging of whole anaerobic ammonium-oxidizing bacteria
Peng, M.-W.; Guan, Y.; Liu, J.-H.; Chen, L.; Wang, H.; Xie, Z.-Z.; Li, H.-Y.; Chen, Y.-P.; Liu, P.; Yan, P.; Guo, J.-S.; Liu, G.; Shen, Y.; Fang, F.
10.1101/709188 — cell biology — Posted on 2019-07-22
1189 Laminar differences in responses to naturalistic texture in macaque V1 and V2
Ziemba, C.; Perez, R. K.; Pai, J.; Hallum, L. E.; Shooner, C.; Kelly, J. G.; Movshon, J. A.
10.1101/710426 — neuroscience — Posted on 2019-07-22
1191 Comparative assessment of methods for determining adiposity and a model for obesity index
Duedu, K. O.; Adedia, D.; Boakye, A. A.; Mensah, D.; Lokpo, S. Y.; Afeke, I.
10.1101/710970 — physiology — Posted on 2019-07-22
1192 Putative protective neural mechanisms in pre-readers with a family history of dyslexia who subsequently develop typical reading skills
Yu, X.; Zuk, J.; Perdue, M. V.; Ozernov-Palchik, O.; Raney, T.; Beach, S. D.; Norton, E. S.; Ou, Y.; Gabrieli, J. D. E.; Gaab, N.
10.1101/707786 — neuroscience — Posted on 2019-07-22
1193 Dynamic Reorganization of the Frontal Parietal Network During Cognitive Control and Episodic Memory
Ray, K.; Ragland, J. D.; MacDonald, A.; Gold, J.; Silverstain, S.; Barch, D.; Carter, C. S.
10.1101/709220 — neuroscience — Posted on 2019-07-22
1196 Restoring Function After Severe Spinal Cord Injury Through Bioluminescence-Driven Optogenetics
Petersen, E. D.; Sharkey, E. D.; Pal, A.; Shafau, L. O.; Zenchak, J. R.; Pena, A. J.; Aggarwal, A.; Prakash, M.; Hochgeschwender, U.
10.1101/710194 — neuroscience — Posted on 2019-07-22
1197 Reduced sleep pressure in young children with autism
Arazi, A.; Meiri, G.; Danan, D.; Michaelovski, A.; Flusser, H.; Menashe, I.; Tarasiuk, A.; Dinstein, I.
10.1101/706135 — neuroscience — Posted on 2019-07-22
1198 Representational organization of novel task sets during proactive encoding.
Palenciano, A. F.; Gonzalez-Garcia, C.; Arco, J. E.; Pessoa, L.; Ruz, M.
10.1101/710244 — neuroscience — Posted on 2019-07-22
1203 Low-glutathione mutants are impaired in growth but do not show an increased sensitivity to moderate water deficit
Meyer, A. J.; Bangash, S. A. K.; Solbach, D.; Jansen, M.; Fiorani, F.; Schwarzländer, M.; Kopriva, S.
10.1101/710962 — plant biology — Posted on 2019-07-22
1207 Chloride dynamics alter the input-output properties of neurons
Currin, C. B.; Trevelyan, A. J.; Akerman, C. J.; Raimondo, J. V.
10.1101/710277 — neuroscience — Posted on 2019-07-22
1208 PI16 is a non-neuronal regulator of neuropathic pain
Singhmar, P.; Trinh, R. T. P.; Ma, J.; Huo, X.; Peng, B.; Heijnen, C. J.; Kavelaars, A.
10.1101/696542 — neuroscience — Posted on 2019-07-22
1210 Alpha rhythms reveal when, where and how memories are retrieved
Martin-Buro, M. C.; Wimber, M.; Henson, R.; Staresina, B.
10.1101/708602 — neuroscience — Posted on 2019-07-22
1217 Deep Multi-State Dynamic Recurrent Neural Networks Operating on Wavelet Based Neural Features for Robust Brain Machine Interfaces
Haghi, B.; Kellis, S.; Shah, S.; Ashok, M.; Bashford, L.; Kramer, D.; Lee, B.; Liu, C.; Andersen, R. A.; Emami, A.
10.1101/710327 — neuroscience — Posted on 2019-07-22
1222 Lessons in genome engineering: opportunities, tools and pitfalls
Poernbacher, I.; Crossman, S.; Kurth, J.; Nojima, H.; Baena-Lopez, A.; Alexandre, C.; vincent, J.-P.
10.1101/710871 — genetics — Posted on 2019-07-22
1223 Distinct specific interactions of the UapA transporter with membrane lipids are critical for dimerization, ER-exit and function
Diallinas, G.; Kourkoulou, A.; Grevias, P.; Lambrinidis, G.; Pyle, E.; Dionysopoulou, M.; Politis, A.; Mikros, E.; Byrne, B.
10.1101/710897 — genetics — Posted on 2019-07-22
1225 Local rabies transmission and regional spatial coupling in European foxes
Baker, L.; Matthiopoulos, J.; Müller, T.; Freuling, C.; Hampson, K.
10.1101/710988 — ecology — Posted on 2019-07-22
1226 Intercostal Space Prediction Using Deep Learning In Fully Endoscopic Mitral Valve Surgery
Margaryan, R.; Della Latta, D.; Bianchi, G.; Martini, N.; Santini, G.; Chiappino, D.; Solinas, M.
10.1101/710996 — bioinformatics — Posted on 2019-07-22
1227 The plant mobile domain proteins MAIN and MAIL1 interact with the phosphatase PP7L to regulate gene expression and silence transposable elements in Arabidopsis thaliana.
Nicolau, M.; Picault, N.; Descombin, J.; Jami-Alahmadi, Y.; Feng, S.; Bucher, E.; Jacobsen, S. E.; Deragon, J.-M.; Wohlschlegel, J.; Moissiard, G.
10.1101/710905 — plant biology — Posted on 2019-07-22
1230 Covering all your bases: incorporating intron signal from RNA-seq data
Lee, S.; Zhang, A. Y.; Su, S.; Ng, A. P.; Holik, A. Z.; Asselin-Labat, M.-L.; Ritchie, M. E.; Law, C. W.
10.1101/352823 — bioinformatics — Posted on 2019-07-22
1232 Evidence that inconsistent gene prediction can mislead analysis of algal genomes
Chen, Y.; Gonzalez-Pech, R. A.; Stephens, T. G.; Bhattacharya, D. A.; Chan, C. X.
10.1101/690040 — genomics — Posted on 2019-07-22
1237 Evolved for success in novel environments: the round goby genome
Adrian-Kalchhauser, I.; Blomberg, A.; Larsson, T.; Musliova, Z.; Peart, C. R.; Pippel, M.; Hongroe Solbakken, M.; Suurvaeli, J.; Walser, J.-C.; Wilson, J. Y.; Alm Rosenblad, M.; Burguera, D.; Gutnik, S.; Michiels, N.; Toelpel, M.; Pankov, K.; Schloissnig, S.; Winkler, S.
10.1101/708974 — ecology — Posted on 2019-07-21
1240 Advantages of Multi-shell Diffusion Models for Studies of Brain Development in Youth
Pines, A. R.; Cieslak, M.; Baum, G. L.; Cook, P. A.; Adebimpe, A.; Davila, D. G.; Elliott, M. A.; Jirsaraie, R.; Murtha, K.; Oathes, D. J.; Piiwaa, K.; Rosen, A. F.; Rush, S.; Shinohara, R. T.; Bassett, D. S.; Roalf, D. R.; Satterthwaite, T. D.
10.1101/611590 — neuroscience — Posted on 2019-07-21
1248 Malassezia interaction with a reconstructed human epidermis: imaging studies
Pedrosa, A. F.; Lisboa, C.; Branco, J.; Almeida, A. C.; Mendes, C.; Pellevoisin, C.; Leite-Moreira, A.; Miranda, I. M.; Rodrigues, A. G.
10.1101/700781 — microbiology — Posted on 2019-07-21
1249 Increased infection risk in Addison’s disease and congenital adrenal hyperplasia: a primary care database cohort study
Tresoldi, A. S.; Sumilo, D.; Perrins, M.; Toulis, K. A.; Prete, A.; Reddy, N.; Wass, J. A. H.; Arlt, W.; Nirantharakumar, K.
10.1101/628156 — epidemiology — Posted on 2019-07-21
1251 The sequential and cooperative action of CSB, CSA and UVSSA targets the TFIIH complex to DNA damage-stalled RNA polymerase II
van der Weegen, Y.; Golan Berman, H.; Mevissen, T. E. T.; Apelt, K.; Gonzalez-Prieto, R.; Heilbrun, E.; Vertegaal, A. C. O.; van den Heuvel, D.; Walter, J. C.; Adar, S.; Luijsterburg, M. S.
10.1101/707216 — molecular biology — Posted on 2019-07-21
1261 Fxr1 regulates sleep and synaptic homeostasis
Khlghatyan, J.; Evstratova, A.; Bozoyan, L.; Chamberland, S.; Marakhovskaia, A.; Soares Silva, T.; Toth, K.; Mongrain, V.; Beaulieu, J.-M.
10.1101/709345 — neuroscience — Posted on 2019-07-21
1262 Laboratory culture of the California Sea Firefly Vargula tsujii (Ostracoda: Cypridinidae): Developing a model system for the evolution of marine bioluminescence
Goodheart, J. A.; Minsky, G.; Brynjegard-Bialik, M. N.; Drummond, M. S.; Munoz, J. D.; Fallon, T. R.; Schultz, D. T.; Weng, J.-K.; Torres, E.; Oakley, T. H.
10.1101/708065 — developmental biology — Posted on 2019-07-21
1266 The viral SUMO-targeted Ubiquitin Ligase ICP0 is phosphorylated and activated by host kinase Chk2
Hembram, D. S.; Negi, H.; Biswas, P.; Tripathi, V.; Bhushan, L.; Shet, D.; Kumar, V.; Das, R.
10.1101/709485 — biochemistry — Posted on 2019-07-21
1268 Endoplasmic reticulum associated degradation preserves hematopoietic stem cell quiescence and self-renewal by restricting mTOR activity
Liu, L.; Inoki, A.; Fan, K.; Mao, F.; Shi, G.; Jin, X.; Zhao, M.; Ney, G.; Sun, S.; Dou, Y.; Inoki, K.; Qi, L.; Li, Q.
10.1101/709964 — cell biology — Posted on 2019-07-21
1269 Core spliceosomal Sm proteins as constituents of cytoplasmic mRNPs in plants.
Hyjek, M.; Bajczyk, M.; Golebiewski, M.; Nuc, P.; Kolowerzo-Lubnau, A.; Jarmolowski, A.; Smolinski, D. J.
10.1101/709550 — cell biology — Posted on 2019-07-21
1270 Live and let reproduce: Crown defoliation decreases reproduction and wood growth in a marginal European beech population.
Oddou-Muratorio, S.; Petit, C.; Journe, V.; Lingrand, M.; Magdalou, J.-A.; Hurson, C.; Garrigue, J.; Davi, H.; Magnanou, E.
10.1101/474874 — ecology — Posted on 2019-07-21
1272 p75NTR and DR6 regulate distinct phases of axon degeneration demarcated by spheroid rupture.
Yong, Y. D.; Gamage, K.; Cheng, I.; Barford, K.; Spano, A.; Winckler, B.; Deppmann, C.
10.1101/710111 — neuroscience — Posted on 2019-07-20
1274 Restriction Enzyme Based Enriched L1Hs sequencing (REBELseq)
Reiner, B. C.; Doyle, G. A.; Weller, A. E.; Levinson, R. N.; Namoglu, E.; Pigeon, A.; Arauco-Shapiro, G.; Davila Perea, E.; Weickert, C. S.; Turecki, G.; Mash, D. C.; Crist, R. C.; Berrettini, W. H.
10.1101/710095 — genetics — Posted on 2019-07-20
1275 cyTRON and cyTRON/JS: two Cytoscape-based applications for the inference of cancer evolution models
Patruno, L.; Galimberti, E.; Ramazzotti, D.; Caravagna, G.; De Sano, L.; Antoniotti, M.; Graudenzi, A.
10.1101/135483 — bioinformatics — Posted on 2019-07-20
1276 PEMA: from the raw .fastq files of 16S rRNA and COI marker genes to the (M)OTU-table, a thorough metabarcoding analysis
Zafeiropoulos, H.; Viet, H. Q.; Vasileiadou, K.; Potirakis, A.; Arvanitidis, C.; Topalis, P.; Pavloudi, C.; Pafilis, E.
10.1101/709113 — bioinformatics — Posted on 2019-07-20
1277 A Willow Sex Chromosome Reveals Convergent Evolution of Complex Palindromic Repeats
Zhou, R.; Macaya-Sanz, D.; Carlson, C. H.; Schmutz, J.; Jenkins, J. W.; Kudrna, D.; Sharma, A.; Sandor, L.; Shu, S.; Barry, K.; Tuskan, G. A.; Ma, T.; Liu, J.; Olson, M.; Smart, L. B.; DiFazio, S.
10.1101/710046 — genomics — Posted on 2019-07-20
1280 Describing the fecal metabolome in cryogenically collected samples from healthy participants.
Trost, K.; Ahonen, L.; Suvitaival, T.; Christiansen, N.; Nielsen, T.; Thiele, M.; Jacobsen, S.; Krag, A.; Rossing, P.; Hansen, T.; Dragsted, L. O.; Legido-Quigley, C.
10.1101/708685 — systems biology — Posted on 2019-07-20
1283 Heterogeneity in Nucleosome Spacing Governs Chromatin Elasticity
Beltran, B.; Kannan, D.; MacPherson, Q.; Spakowitz, A.
10.1101/708966 — biophysics — Posted on 2019-07-20
1286 Rora regulates activated T helper cells during inflammation
Liora, V.; Walker, J. A.; Henriksson, J.; Miao, Z.; Natan, E.; Kar, G.; Clare, S.; Barlow, J. L.; Charidemou, E.; Mamanova, L.; Chen, X.; Proserpio, V.; Pramanik, J.; Woodhouse, S.; Protasio, A. V.; Efremova, M.; Berriman, M.; Dougan, G.; Fisher, J.; Marioni, J. C.; McKenzie, A. N.; Teichmann, S. A.
10.1101/709998 — immunology — Posted on 2019-07-20
1288 An Out-of-Patagonia dispersal explains most of the worldwide genetic distribution in Saccharomyces eubayanus
Nespolo, R. F.; Villarroel, C. A.; Oporto, C. I.; Tapia, S. M.; Vega, F.; Urbina, K.; De Chiara, M.; Mozzachiodi, S.; Mikhalev, E.; Thompson, D.; Saenz-Agudelo, P.; Liti, G.; Cubillos, F. A.
10.1101/709253 — genomics — Posted on 2019-07-20
1289 Analysis of common and rare VPS13C variants in late onset Parkinson disease
Rudakou, U.; Ruskey, J. A.; Krohn, L.; Laurent, S. B.; Spiegelman, D.; Greenbaum, L.; Yahalom, G.; Desautels, A.; Montplaisir, J. Y. Y.; Fahn, S.; Waters, C. H.; Levy, O.; Kehoe, C. M.; Narayan, S.; Dauvilliers, Y.; Dupre, N.; Hassin-Baer, S.; Alcalay, R. N.; Rouleau, G. A.; Fon, E. A.; Gan-Or, Z.
10.1101/705533 — genetics — Posted on 2019-07-20
1290 Where Natural Protein Sequences Stand out From Randomness
Weidmann, L.; Dijkstra, T.; Kohlbacher, O.; Lupas, A. N.
10.1101/706119 — evolutionary biology — Posted on 2019-07-20
1292 Allelic diversity of NAC18.1 is a major determinant of fruit firmness and harvest date in apple (Malus domestica)
Yeats, T. H.; Migicovsky, Z.; Watts, S.; Song, J.; Forney, C. F.; Burgher-MacLellan, K.; Somers, D. J.; Vrebalov, J.; Giovannoni, J. G.; Rose, J. K. C.; Myles, S.
10.1101/708040 — plant biology — Posted on 2019-07-20
1293 Plant respiration: controlled by photosynthesis or biomass?
Collalti, A.; Tjoelker, M.; Hoch, G.; Makela, A.; Guidolotti, G.; Heskel, M.; Petit, G.; Ryan, M.; Matteucci, G.; Battipaglia, G.; Prentice, I. C.
10.1101/705400 — ecology — Posted on 2019-07-20
1294 Kinase inhibition of G2019S-LRRK2 restores autolysosome formation and function to reduce endogenous alpha-synuclein intracellular inclusions
Obergasteiger, J.; Frapporti, G.; Lamonaca, G.; Pizzi, S.; Picard, A.; Pischedda, F.; Piccoli, G.; Lobbestael, E.; Baekelandt, V.; Hicks, A. A.; Corti, C.; Pramstaller, P. P.; Volta, M.
10.1101/707273 — cell biology — Posted on 2019-07-20
1295 A lab-on-a-chip model of glaucoma
Nafian, F.; Kamali Doust Azad, B.; Yazdani, S.; Rasaee, M. J.; Daftarian, N.
10.1101/704510 — bioengineering — Posted on 2019-07-20
1299 From Single Neurons to Behavior in the Jellyfish Aurelia aurita
Pallasdies, F.; Goedeke, S.; Braun, W.; Memmesheimer, R.-M.
10.1101/698548 — neuroscience — Posted on 2019-07-20
1300 RNA processing machineries in Archaea: the 5’-3’ exoribonuclease aRNase J of the β-CASP family is engaged specifically with the helicase ASH-Ski2 and the 3’-5’ exoribonucleolytic RNA exosome machinery
Phung, D. K.; Etienne, C.; Batista, M.; Langendijk-Genevaux, P.; Moalic, Y.; Laurent, S.; Morales, V.; Jebbar, M.; Fichant, G.; Bouvier, M.; Flament, D.; Clouet-d'Orval, B.
10.1101/699629 — molecular biology — Posted on 2019-07-20
1301 Classification of hospital and urban wastewater resistome and microbiota over time and their relationship to the eco-exposome.
Buelow, E.; Rico, A.; Gaschet, M.; Lourenco, J.; Kennedy, S. P.; Wiest, L.; Ploy, M.-C.; Dagot, C.
10.1101/697433 — microbiology — Posted on 2019-07-20
1303 Long-term cognitive impairment without diffuse axonal injury following repetitive mild traumatic brain injury in rats
Tadepalli, S. A.; Bali, Z. K.; Bruszt, N.; Nagy, L. V.; Amrein, K.; Fazekas, B.; Büki, A.; Czeiter, E.; Hernadi, I.
10.1101/695718 — neuroscience — Posted on 2019-07-20
1305 STARRPeaker: Uniform processing and accurate identification of STARR-seq active regions
Lee, D.; Shi, M.; Moran, J.; Wall, M.; Zhang, J.; Liu, J.; Fitzgerald, D.; Kyono, Y.; Ma, L.; White, K. P.; Gerstein, M. B.
10.1101/694869 — bioinformatics — Posted on 2019-07-20
1309 A prospective analysis of circulating plasma metabolomics and ovarian cancer risk
Zeleznik, O. A.; Eliassen, A. H.; Kraft, P.; Poole, E. M.; Rosner, B.; Jeanfavre, S.; Deik, A.; Bullock, K.; Hitchcock, D.; Avila-Pancheco, J.; Clish, C. B.; Tworoger, S. S.
10.1101/654962 — epidemiology — Posted on 2019-07-20
1312 Systematic identification of cancer cell vulnerabilities to natural killer cell-mediated immune surveillance
Pech, M. F.; Fong, L. E.; Villalta, J. E.; Chan, L. J. G.; Kharbanda, S.; O'Brien, J. J.; McAllister, F. E.; Firestone, A. J.; Jan, C. H.; Settleman, J.
10.1101/597567 — cancer biology — Posted on 2019-07-20
1314 Cell fitness is an omniphenotype
Jacobs, N. C.; Park, J.; Peterson, T.
10.1101/487157 — systems biology — Posted on 2019-07-20
1323 Chlamydomonas reinhardtii formin FOR1 and profilin PRF1 are optimized for acute rapid actin filament assembly
Christensen, J. R.; Craig, E. W.; Glista, M. J.; Mueller, D. M.; Li, Y.; Sees, J. A.; Huang, S.; Mets, L. J.; Kovar, D. R.; Avasthi, P.
10.1101/096008 — cell biology — Posted on 2019-07-20
1324 Suppression of p16 increases nucleotide synthesis via mTORC1
Buj, R.; Chen, C.-W.; Dahl, E. S.; Leon, K. E.; Kuskovsky, R.; Maglakelidze, N.; Navaratnarajah, M.; Zhang, G.; Doan, M. T.; Jiang, H.; Zaleski, M.; Kutzler, L.; Lacko, H.; Lu, Y.; Mills, G. B.; Gowda, R.; Robertson, G. P.; Warrick, J. I.; Herlyn, M.; Imamura, Y.; Kimball, S.; DeGraff, D. J.; Snyder, N. W.; Aird, K. M.
10.1101/393876 — cancer biology — Posted on 2019-07-20
1326 Maternal inflammation has a profound effect on cortical interneuron development in a stage and subtype-specific manner
Vasistha, N. A.; Pardo-Navarro, M.; Gasthaus, J.; Weijers, D.; Mueller, M. K.; Garcia-Gonzlez, D.; Malwade, S.; Korshunova, I.; Pfisterer, U.; von Engelhardt, J.; Hougaard, K. S.; Khodosevich, K.
10.1101/412981 — neuroscience — Posted on 2019-07-20
1328 Regulation of Hepatic MicroRNAs in Response to Early Stage Echinococcus multilocularis Egg Infection in C57BL/6 mice
Gottstein, B.; Boubaker, G.; Strempel, S.; Hemphill, A.; Mueller, N.; Wang, J.; Spiliotis, M.
10.1101/708750 — microbiology — Posted on 2019-07-20
1329 Plasma-derived HIV Nef+ exosomes persist in ACTG384 study participants despite successful virological suppression.
Raymond, A. D.; Lang, M. J.; Chu, J.; Campbell-Sims, T.; Khan, M. B.; Bond, V. C.; Pollard, R. B.; Asmuth, D. M.; Powell, M. D.
10.1101/708719 — microbiology — Posted on 2019-07-20
1330 Network analysis of the papaya orchard virome from two agroecological regions of Chiapas, Mexico
Alcala-Briseno, R. I.; Casarrubias-Castillo, K.; Lopez-Ley, D.; Garrett, K.; Silva-Rosales, L.
10.1101/708479 — microbiology — Posted on 2019-07-20
1331 A novel lineage of candidate pheromone receptors for sex communication in moths
Bastin-Heline, L.; de Fouchier, A.; Cao, S.; Koutroumpa, F.; Caballero-Vidal, G.; Robakiewicz, S.; Monsempes, C.; Francois, M.-C.; Ribeyre, T.; de Cian, A.; Walker, W. B.; Wang, G.; Jacquin-Joly, E.; Montagne, N.
10.1101/707174 — evolutionary biology — Posted on 2019-07-20
1332 Interdependence between confirmed and discarded cases of dengue, chikungunya and Zika viruses in Brazil: A multivariate time-series analysis
Oliveira, J. F.; Rodrigues, M. S.; Skalinski, L. M.; Santos, A. E.; Costa, L. C.; Cardim, L. L.; Paixao, E. S.; Costa, M. d. C. N.; Oliveira, W. K.; Barreto, M. L.; Teixeira, M. G.; Andrade, R. F. S.
10.1101/708743 — epidemiology — Posted on 2019-07-20
1335 Tree Lab: Portable genomics for early detection of plant viruses and pests in Sub-Saharan Africa
Boykin, L. M.; Sseruwagi, P.; Alicai, T.; Ateka, E.; Mohammed, I. U.; Stanton, J.-A.; Kayuki, C.; Mark, D.; Fute, T.; Erasto, J.; Bachwenkizi, H.; Muga, B.; Mwangi, J.; Mumo, N.; Abidrabo, P.; Okao-Okuja, G.; Omuut, G.; Akol, J.; Apio, H. B.; Osingada, F.; Kehoe, M.; Eccles, D.; Savill, A.; Lamb, S.; Kinene, T.; Rawle, C. B.; Muralidhar, A.; Mayall, K.; Tairo, F.; Ndunguru, J.
10.1101/702613 — genomics — Posted on 2019-07-20
1336 RootNav 2.0: Deep Learning for Automatic Navigation of Complex Plant Root Architectures
Yasrab, R.; Atkinson, J. A.; Wells, D. M.; French, A. P.; Pridmore, T. P.; Pound, M. P.
10.1101/709147 — bioinformatics — Posted on 2019-07-20
1339 NBR1-mediated p62-liquid droplets enhance the Keap1-Nrf2 system
Komatsu, M.; Sanchez-Martin, P.; Kageyama, S.; Sou, Y.-S.
10.1101/709105 — cell biology — Posted on 2019-07-19
1340 Probabilistic Assessment of Nerve Regeneration with Diffusion MRI: Validation in Rat Models of Peripheral Nerve Trauma
Manzanera Esteve, I. V.; Farinas, A. F.; Pollins, A. C.; Nussenbaum, M. E.; Cardwell, N. L.; Kang, H.; Does, M. D.; Thayer, W. P.; Dortch, R. D.
10.1101/707646 — neuroscience — Posted on 2019-07-19
1341 Functional cortico-subcortical reorganization after complete hemispheric disconnection for intractable epilepsy
Blauwblomme, T.; Demertzi, A.; Tacchela, J.-M.; Fillon, L.; Bourgeois, M.; Lositto, E.; Eisermann, M.; Marinazzo, D.; Raimondo, F.; Alcauter, S.; Van de Steen, F.; Colenbier, N.; Laureys, S.; Dangouloff-Ros, V.; Naccache, L.; Boddaert, N.; Nabbout, R.
10.1101/707539 — neuroscience — Posted on 2019-07-19
1343 Genomic diversity and global distribution of Saccharomyces eubayanus, the wild ancestor of hybrid lager-brewing yeasts
Langdon, Q. K.; Peris, D.; Eizaguirre, J. I.; Opulente, D. A.; Buh, K. V.; Sylvester, K.; Jarzyna, M.; Rodriguez, M. E.; Lopes, C. A.; Libkind, D.; Hittinger, C. T.
10.1101/709535 — genomics — Posted on 2019-07-19
1344 Identifying hetero-protein complexes in the nuclear envelope
Hennen, J.; Hur, K.-H.; Kohler, J.; Karuka, S. R.; Angert, I.; Luxton, G. G.; Mueller, J.
10.1101/709196 — biophysics — Posted on 2019-07-19
1346 A high-content RNAi screen reveals multiple roles for long noncoding RNAs in cell division
Stojic, L.; Lun, A. T.; Mascalchi, P.; Ernst, C.; Redmond, A. M.; Mangei, J.; Barr, A. R.; Bousgouni, V.; Bakal, C.; Marioni, J. C.; Odom, D. T.; Gergely, F.
10.1101/709030 — cell biology — Posted on 2019-07-19
1348 Micro-probing enables high-resolution mapping of neuronal subpopulations using fMRI
Carvalho, J.; Invernizzi, A.; Ahmadi, K.; Hoffmann, M. B.; Renken, R. J.; Cornelissen, F. W.
10.1101/709006 — neuroscience — Posted on 2019-07-19
1349 Metabolic stress is a primary pathogenic event in transgenic Caenorhabditis elegans expressing neuronal human amyloid-β
Teo, E.; Ravi, S.; Barardo, D.; Kim, H.-S.; Fong, S.; Cazenave-Gassiot, A.; Tan, T. Y.; Ching, J.; Kovalik, J.-P.; Wenk, M. R.; Gunawan, R.; Moore, P. K.; Halliwell, B.; Tolwinski, N.; Gruber, J.
10.1101/708537 — neuroscience — Posted on 2019-07-19
1353 H3K4me3 is neither instructive for, nor informed by, transcription.
Murray, S. C.; Lorenz, P.; Howe, F.; Wouters, M.; Brown, T.; Xi, S.; Fischl, H.; Khushaim, W.; Rayappu, J. R.; Angel, A.; Mellor, J.
10.1101/709014 — genomics — Posted on 2019-07-19
1355 Functional plasticity and reversible growth behavior of patients acute myeloid leukemia stem cells growing in mice
Ebinger, S.; Zeller, C.; Carlet, M.; Senft, D.; Liu, W.-H.; Rothenberg-Thurley, M.; Metzeler, K. H.; Spiekermann, K.; Vick, B.; Jeremias, I.
10.1101/707935 — cancer biology — Posted on 2019-07-19
1358 Prolonged podocyte depletion in larval zebrafish resembles mammalian focal and segmental glomerulosclerosis
Hansen, K. U. I.; Siegerist, F.; Daniel, S.; Schindler, M.; Blumenthal, A.; Zhou, W.; Endlich, K.; Endlich, N.
10.1101/706267 — pathology — Posted on 2019-07-19
1359 kCSD-python, a tool for reliable Current Source Density estimation
Chintaluri, H. C.; Kowalska, M.; Sredniawa, W.; Czerwinski, M. B.; Dzik, J. M.; Jedrzejewska-Szmek, J.; Wojcik, D. K.
10.1101/708511 — neuroscience — Posted on 2019-07-19
1361 Evolved for success in novel environments: the round goby genome
Adrian-Kalchhauser, I.; Blomberg, A.; Larsson, T.; Musliova, Z.; Peart, C. R.; Pippel, M.; Hongroe Solbakken, M.; Suurvaeli, J.; Walser, J.-C.; Wilson, J. Y.; Alm Rosenblad, M.; Burguera, D.; Gutnik, S.; Michiels, N.; Toelpel, M.; Pankov, K.; Schloissnig, S.; Winkler, S.
10.1101/708974 — ecology — Posted on 2019-07-19
1362 Rfx6 promotes the differentiation of peptide-secreting enteroendocrine cells while repressing genetic programs controlling serotonin production
Piccand, J.; Vagne, C.; Blot, F.; Meunier, A.; Beucher, A.; Strasser, P.; Lund, M. L.; Ghimire, S.; Nivlet, L.; LAPP, C.; Petersen, N.; Engelstoft, M. S.; Thibault-Carpentier, C.; Keime, C.; Jimenez Correa, S.; Schreiber, V.; Molina, N.; Schwartz, T. W.; De Arcangelis, A.; GRADWOHL, G.
10.1101/704924 — developmental biology — Posted on 2019-07-19
1364 The in vivo endothelial cell translatome is highly heterogeneous across vascular beds
Cleuren, A. C. A.; van der Ent, M. A.; Jiang, H.; Hunker, K. L.; Yee, A.; Siemieniak, D. R.; Molema, G.; Aird, W. C.; Ganesh, S. K.; Ginsburg, D.
10.1101/708701 — genomics — Posted on 2019-07-19
1365 BIAFLOWS: A collaborative framework to benchmark bioimage analysis workflows
Rubens, U.; Mormont, R.; Baecker, V.; Michiels, G.; Paavolainen, L.; Ball, G.; Unay, D.; Pavie, B.; Chessel, A.; Scholz, L. A.; Maska, M.; Hoyoux, R.; Vandaele, R.; Stanciu, S. G.; Golani, O.; Sladoje, N.; Paul-Gilloteaux, P.; Maree, R.; Tosi, S.
10.1101/707489 — bioinformatics — Posted on 2019-07-19
1367 How well do crop models predict phenology, with emphasis on the effect of calibration?
Wallach, D.; Palosuo, T.; Thorburn, P.; Seidel, S. J.; Gourdain, E.; Asseng, S.; Basso, B.; Buis, S.; Crout, N.; Dibari, C.; Dumont, B.; Ferrise, R.; Gaiser, T.; Garcia, C.; Gayler, S.; Ghahramani, A.; Hochman, Z.; Hoek, S.; Horan, H.; Hoogenboom, G.; Huang, M.; Jabloun, M.; Jing, Q.; Justes, E.; Kersebaum, K. C.; Klosterhalfen, A.; Launay, M.; Luo, Q.; Maestrini, B.; Mielenz, H.; Moriondo, M.; Nariman Zadeh, H.; Olesen, J. E.; Poyda, A.; Priesack, E.; Pullens, J. W. M.; Budong, Q.; Schuetze, N.; Shelia, V.; Souissi, A.; Specka, X.; Srivastava, A. K.; Stella, T.; Streck, T.; Trombi, G.; Wallor
10.1101/708578 — plant biology — Posted on 2019-07-19
1369 Reduced responsiveness of the reward system underlies tolerance to cannabis impairment in chronic users
Mason, N. L.; Theunissen, E. L.; Hutten, N. R. P. W.; Tse, D. H. Y.; Toennes, S. W.; Jansen, J. F. A.; Stiers, P.; Ramaekers, J. G.
10.1101/708677 — neuroscience — Posted on 2019-07-19
1372 A porcine ex vivo lung perfusion model to investigate bacterial pathogenesis
Dumigan, A.; Fitzgerald, M.; Sa-Pessoa, J.; Hamid, U.; O'kane, C.; McAuley, D. F.; Bengoechea, J. A.
10.1101/708503 — microbiology — Posted on 2019-07-19
1377 Vascular Expression of Hemoglobin Alpha in Antarctic Icefish Supports Iron Limitation as Novel Evolutionary Driver
Corliss, B. A.; Delalio, L. J.; Keller, T. C. S.; Keller, A. S.; Keller, D. A.; Corliss, B. H.; Bjork, A. C.; Beers, J. M.; Peirce, S. M.; Isakson, B. E.
10.1101/707810 — physiology — Posted on 2019-07-19
1380 Genome sequence of the cluster root forming white lupin
Hufnagel, B.; Marques, A.; Soriano, A.; Marques, L.; Divol, F.; Doumas, P.; Sallet, E.; Mancinotti, D.; Carrere, S.; Marrande, W.; Arribat, S.; Keller, J.; Huneau, C.; Blein, T.; Aime, D.; Laguerre, M.; Taylor, J.; Schubert, V.; Nelson, M.; Geu-Flores, F.; Crespi, M.; Gallardo-Guerrero, K.; Delaux, P.-M.; Salse, J.; Berges, H.; Guyot, R.; Gouzy, J.; Peret, B.
10.1101/708917 — genomics — Posted on 2019-07-19
1385 What can we learn from over 100,000 Escherichia coli genomes?
Abram, K. Z. Z.; Udaondo, Z.; Bleker, C.; Wanchai, V.; Wassenaar, T. M.; Ussery, D. W.
10.1101/708131 — genomics — Posted on 2019-07-19
1389 Concurrent lipidomics and proteomics on malignant plasma cells from multiple myeloma patients: Probing the lipid metabolome
Mohamed, A.; Collins, J.; Jiang, H.; Molendijk, J.; Stoll, T.; Torta, F.; Wenk, M. R.; Bird, R. J.; Marlton, P.; Mollee, P.; Markey, K. A.; Hill, M. M.
10.1101/702993 — systems biology — Posted on 2019-07-19
1393 RecO impedes RecG-SSB binding to impair the strand annealing recombination pathway in E.coli
Pan, X.; Yang, L.; Jiang, N.; Chen, X.; Li, B.; Yan, X.; Dou, Y.; Ding, L.; Duan, F.
10.1101/708271 — molecular biology — Posted on 2019-07-19
1396 Atrial fibrillation associated common risk variants in SYNE2 lead to lower expression of nesprin-2α1 and increased nuclear stiffness
Liu, N.; Hsu, J.; Mahajan, G.; Han, S.; Barnard, J.; Van Wagoner, D. R.; Kothapalli, C. R.; Chung, M. K.; Smith, J. D.
10.1101/708057 — genomics — Posted on 2019-07-19
1398 Improved FRAP measurements on biofilms
Hauth, J.; Chodorski, J.; Wirsen, A.; Ulber, R.
10.1101/707950 — bioinformatics — Posted on 2019-07-19
1399 Stroke prevents exercise-induced gains in bone microstructure but not composition in mice
Hanne, N. J.; Steward, A. J.; Sessions, M. R.; Thornburg, H. L.; Sheng, H.; Cole, J. H.
10.1101/708388 — bioengineering — Posted on 2019-07-19
1402 α-carboxysome formation is mediated by the multivalent and disordered protein CsoS2
Oltrogge, L. M.; Chaijarasphong, T.; Chen, A. W.; Bolin, E. R.; Marqusee, S.; Savage, D. F.
10.1101/708164 — biochemistry — Posted on 2019-07-19
1403 Dysregulation of HSP27 oligomerization and interactions by a neuropathy-causing mutation in the C-terminal IPV motif
Alderson, T. R.; Adriaenssens, E.; Asselbergh, B.; Pritisanac, I.; Gastall, H. Y.; Walti, M.; Louis, J. M.; Timmerman, V.; Baldwin, A.; Benesch, J. L. P.
10.1101/708180 — biochemistry — Posted on 2019-07-19
1404 Beyond the Motor Cortex: Theta Burst Stimulation of the Anterior Midcingulate Cortex
Baker, T. E.; Lin, M.-H. E.; Parikh, S. E.; Bauer, N. E.; Cocuzza, C. E.
10.1101/707802 — neuroscience — Posted on 2019-07-19
1407 Designed Nanoparticles Elicit Cross-Reactive Antibody Responses To Conserved Influenza Virus Hemagglutinin Stem Epitopes
McCraw, D. M.; Myers, M. L.; Gulati, N. M.; Gallagher, J. R.; Kim, A. J.; Torian, U.; Harris, A. K.
10.1101/707984 — microbiology — Posted on 2019-07-19
1414 Social and non-social autism symptom and trait domains are genetically dissociable
Warrier, V.; Toro, R.; Won, H.; Leblond, C. S.; Cliquet, F.; Delorme, R.; De Witte, W.; Bralten, J.; Chakrabarti, B.; Borglum, A.; Grove, J.; Poelmans, G.; the 23andMe Research Team, ; Hinds, D.; Bourgeron, T.; Baron-Cohen, S.
10.1101/228254 — genetics — Posted on 2019-07-19
1415 Cellular innate and adaptive immunity are affected by chronic exercise: implication of the cannabinergic system
Valencia-Sanchez, S.; Morales-Montor, J.; Nava-Castro, K. E.; Palacios-Arreola, M. I.; Prospero-Garcia, O.; Drucker-Colin, R.
10.1101/708792 — animal behavior and cognition — Posted on 2019-07-19
1417 A unique lower X-gate in TASK channels traps inhibitors within the vestibule
Rodstrom, K. E. J.; Kiper, A. K.; Zhang, W.; Rinne, S.; Pike, A. C. W.; Goldstein, M.; Conrad, L.; Delbeck, M.; Hahn, M.; Meier, H.; Platzk, M.; Quigley, A.; Speedman, D.; Shrestha, L.; Mukhopadhyay, S. M. M.; Burgess-Brown, N. A.; Tucker, S. J.; Mueller, T.; Decher, N.; Carpenter, E. P.
10.1101/706168 — molecular biology — Posted on 2019-07-19
1420 RNA Polymerase II CTD phosphatase Rtr1 prevents premature transcription termination
Fox, M. J.; Victorino, J. F.; Smith-Kinnaman, W. R.; Peck Justice, S. A.; Gao, H.; Boyd, A. K.; Zimmerly, M. A.; Chan, R. R.; Hunter, G. O.; Liu, Y.; Mosley, A. L.
10.1101/708727 — systems biology — Posted on 2019-07-19
1423 Freeze-frame imaging of synaptic activity using SynTagMA
Perez-Alvarez, A.; Fearey, B.; O'Toole, R. J.; Yang, W.; Arganda-Carreras, I.; Hoffmeister-Ullerich, S.; Lamothe-Molina, P. J.; Moeyaert, B.; Mohr, M. A. A.; Panzera, L. C.; Schulze, C.; Schreiter, E. R.; Wiegert, J. S.; Gee, C. E.; Hoppa, M. B.; Oertner, T. G.
10.1101/538041 — neuroscience — Posted on 2019-07-19
1424 Genomic analysis of pathogenic isolates of Vibrio cholerae from eastern Democratic Republic of the Congo (2014-2017)
Irenge, L. M.; Ambroise, J.; Mitangala, P. N.; Bearzatto, B.; Kabangwa, R. K. S.; Durant, J.-F.; Gala, J.-L.
10.1101/708735 — genomics — Posted on 2019-07-19
1425 CLEC-2 suppresses calcification in cultured osteoblasts
Kanai, T.; Sawa, Y.; Takara, K.; Kajiwara, K.; Fujita, T.; Sawa, N.; Yamashita, J.; Sato, Y.
10.1101/708800 — cell biology — Posted on 2019-07-19
1429 Calorie restriction intervention induces enterotype-associated BMI loss in nonobese individuals
Zou, H.; Wang, D.; Ren, H.; Fang, C.; Shi, Z.; Zhang, P.; Chen, P.; Wang, J.; Yang, H.; Cai, K.; Zhong, H.
10.1101/514596 — microbiology — Posted on 2019-07-19
1430 Muscle-secreted G-CSF as a metabolic niche factor ameliorates loss of muscle stem cell in aged mice
Li, H.; Chen, Q.; Li, C.; Zhong, R.; Zhao, Y.; Zhang, Q.; Tong, W.; Zhu, D.; Zhang, Y.
10.1101/488874 — cell biology — Posted on 2019-07-19
1432 Plant respiration: controlled by photosynthesis or biomass?
Collalti, A.; Tjoelker, M.; Hoch, G.; Makela, A.; Guidolotti, G.; Heskel, M.; Petit, G.; Ryan, M.; Matteucci, G.; Battipaglia, G.; Prentice, I. C.
10.1101/705400 — ecology — Posted on 2019-07-19
1433 Identification of new inhibitors of the Toxoplasma gondii by using in-silico drug repurposing
Kadkhodamohammadi, M.; Jaberi, M.; Babaei Akerdi, R.; Karimi, P.; Ahmadi, A.; Aliyar, M.
10.1101/560284 — bioinformatics — Posted on 2019-07-19
1434 Pharmacological Characterisation of Novel Adenosine Receptor A3R Antagonists
Barkan, K.; Lagarias, P.; Vrontaki, E.; Stamatis, D.; Hoare, S.; Klotz, K.-N.; Kolocouris, A.; Ladds, G.
10.1101/693796 — pharmacology and toxicology — Posted on 2019-07-19
1435 Efa6 protects axons and regulates their growth and branching by inhibiting microtubule polymerisation at the cortex
Qu, Y.; Hahn, I.; Lees, M.; Parkin, J.; Voelzmann, A.; Dorey, K.; Rathbone, A.; Friel, C.; Allan, V.; Okenve-Ramos, P.; Sanchez-Soriano, N.; Prokop, A.
10.1101/385658 — cell biology — Posted on 2019-07-19
1437 ER membranes exhibit phase behavior at sites of organelle contact
King, C.; Sengupta, P.; Seo, A.; Lippincott-Schwartz, J.
10.1101/707505 — biophysics — Posted on 2019-07-19
1438 Plant respiration: controlled by photosynthesis or biomass?
Collalti, A.; Tjoelker, M.; Hoch, G.; Makela, A.; Guidolotti, G.; Heskel, M.; Petit, G.; Ryan, M.; Matteucci, G.; Battipaglia, G.; Prentice, I. C.
10.1101/705400 — ecology — Posted on 2019-07-18
1439 Deficiency in Bhlhe40 impairs resistance to H. polygyrus bakeri and reveals novel Csf2rb-dependent regulation of anti-helminth immunity
Jarjour, N. N.; Bradstreet, T. R.; Schwarzkopf, E. A.; Cook, M. E.; Lai, C.-W.; Huang, S. C.-C.; Taneja, R.; Stappenbeck, T. S.; Van Dyken, S. J.; Urban, J. F.; Edelson, B. T.
10.1101/687541 — immunology — Posted on 2019-07-18
1441 A reference map of the human proinsulin biosynthetic interaction network
Tran, D. T.; Pottekat, A.; Mir, S. A.; Jang, I.; Loguercio, S.; Campos, A. R.; Lahmy, R.; Liu, M.; Arvan, P.; Balch, W. E.; Kaufman, R. J.; Itkin-Ansari, P.
10.1101/699132 — biochemistry — Posted on 2019-07-18
1445 Antibody Complementarity Determining Region Design Using High-Capacity Machine Learning
Liu, G.; Zeng, H.; Mueller, J.; Carter, B.; Wang, Z.; Schilz, J.; Horny, G.; Birnbaum, M. E.; Ewert, S.; Gifford, D. K.
10.1101/682880 — immunology — Posted on 2019-07-18
1446 A Truly Injectable Neural Stimulation Electrode Made from an In-Body Curing Polymer/Metal Composite
Trevathan, J. K.; Baumgart, I.; Nicolai, E. N.; Gosink, B. A.; Asp, A. J.; Settell, M. L.; Polaconda, S. R.; Malerick, K.; Brodnick, S. K.; Zeng, W.; Knudsen, B. E.; McConico, A. L.; Sanger, Z.; Lee, J. H.; Aho, J. M.; Suminski, A. J.; Ross, E. K.; Lujan, J. L.; Weber, D. J.; Williams, J. C.; Franke, M.; Ludwig, K. A.; Shoffstall, A. J.
10.1101/584995 — bioengineering — Posted on 2019-07-18
1447 SVCurator: A Crowdsourcing app to visualize evidence of structural variants for the human genome
Chapman, L. M.; Spies, N.; Pai, P.; Lim, C. S.; Carroll, A.; Narzisi, G.; Watson, C. M.; Proukakis, C.; Clarke, W. E.; Nariai, N.; Dawson, E.; Jones, G.; Blankenberg, D.; Brueffer, C.; Xiao, C.; Kolora, S. R. R.; Alexander, N.; Wolujewicz, P.; Ahmed, A.; Smith, G.; Shehreen, S.; Wenger, A. M.; Salit, M.; Zook, J. M.
10.1101/581264 — genomics — Posted on 2019-07-18
1448 Vapor inhalation of cannabidiol (CBD) in rats
Javadi-Paydar, M.; Creehan, K. M.; Kerr, T. M.; Taffe, M. A.
10.1101/659250 — pharmacology and toxicology — Posted on 2019-07-18
1449 Experience shapes activity dynamics and stimulus coding of VIP inhibitory and excitatory cells in visual cortex
Garrett, M. E.; Manavi, S.; Roll, K.; Ollerenshaw, D. R.; Groblewski, P. A.; Kiggins, J.; Jia, X.; Casal, L.; Mace, K.; Williford, A.; Leon, A.; Mihalas, S.; Olsen, S. R.
10.1101/686063 — neuroscience — Posted on 2019-07-18
1451 Estrogen accelerates heart regeneration by promoting inflammatory responses in zebrafish
Shisan, X.; Fangjing, X.; Samane, F.; Fariba, B.; Lina, Z.; Kin Fung, W.; Yinmin, L.; Rajkumar, R.; Lei, S.; Xin, W.; Yun Wah, L.; Shuk Han, C.
10.1101/616250 — developmental biology — Posted on 2019-07-18
1452 An annotation dataset facilitates automatic annotation of whole-brain activity imaging of C. elegans
Toyoshima, Y.; Wu, S.; Kanamori, M.; Sato, H.; Jang, M. S.; Oe, S.; Murakami, Y.; Teramoto, T.; Park, C.; Iwasaki, Y.; Ishihara, T.; Yoshida, R.; Iino, Y.
10.1101/698241 — neuroscience — Posted on 2019-07-18
1453 The genetic architecture of the human cerebral cortex
Grasby, K. L.; Jahanshad, N.; Painter, J. N.; Colodro-Conde, L.; Bralten, J.; Hibar, D. P.; Lind, P. A.; Pizzagalli, F.; Ching, C. R.; McMahon, M. A.; Shatokhina, N.; Zsembik, L. C. P.; Agartz, I.; Alhusaini, S.; Almeida, M. A.; Alnaes, D.; Amlien, I. K.; Andersson, M.; Ard, T.; Armstrong, N. J.; Ashley-Koch, A.; Atkins, J. R.; Bernard, M.; Brouwer, R. M.; Buimer, E. E.; Bülow, R.; Bürger, C.; Cannon, D. M.; Chakravarty, M.; Chen, Q.; Cheung, J. W.; Couvy-Duchesne, B.; Dale, A. M.; Dalvie, S.; de Araujo, T. K.; de Zubicaray, G. I.; de Zwarte, S. M.; den Braber, A.; Doan, N. T.; Dohm, K.; Ehr
10.1101/399402 — genetics — Posted on 2019-07-18
1457 Comparison of adopted and non-adopted individuals reveals gene-environment interplay for education in the UK Biobank
Cheesman, R.; Hunjan, A.; Coleman, J.; Ahmadzadeh, Y.; Plomin, R.; McAdams, T. A.; Eley, T. C.; Breen, G.
10.1101/707695 — genomics — Posted on 2019-07-18
1458 Visualisation of ribosomes in Drosophila axons using Ribo-BiFC
Singh, A. K.; Abdullahi, A.; Soller, M.; David, A.; Brogna, S.
10.1101/706358 — cell biology — Posted on 2019-07-18
1460 Phylogeny, morphology and the role of hybridization as driving force of evolution in grass tribes Aveneae and Poeae (Poaceae)
Tkach, N.; Schneider, J.; Doering, E.; Woelk, A.; Hochbach, A.; Nissen, J.; Winterfeld, G.; Meyer, S.; Gabriel, J.; Hoffmann, M. H.; Roeser, M.
10.1101/707588 — plant biology — Posted on 2019-07-18
1462 Coevolution between life-history and metabolic rate depends on ontogenetic stage
Sowersby, W.; Morozov, S.; Eckerstrom-Liedholm, S.; Lehmann, P.; Rowinski, P.; Naslund, J.; Gonzalez-Voyer, A.; Rogell, B.
10.1101/705707 — evolutionary biology — Posted on 2019-07-18
1463 A Nanog-dependent gene cluster initiates the specification of the pluripotent epiblast
Allegre, N.; Chauveau, S.; Dennis, C.; Renaud, Y.; Valverde Estrella, L.; Pouchin, P.; Cohen-Tannoudji, M.; Chazaud, C.
10.1101/707679 — developmental biology — Posted on 2019-07-18
1465 CRISPR-Cas9 modified bacteriophage for treatment of Staphylococcus aureus induced osteomyelitis and soft tissue infection
Horstemeyer, L. K.; Park, J.; Swanson, E. A.; Beard, M. C.; McCabe, E. M.; Rourke, A. S.; Seo, K. S.; Olivier, A. K.; Priddy, L. B.
10.1101/705830 — bioengineering — Posted on 2019-07-18
1466 In silico screening of GMQ-like compounds reveals guanabenz and sephin1 as new allosteric modulators of acid-sensing ion channel 3
Callejo, G.; Pattison, L. A.; Greenhalgh, J. C.; Chakrabarti, S.; Andreopoulou, E.; Hockley, J. R.; Smith, E.; Rahman, T.
10.1101/704445 — pharmacology and toxicology — Posted on 2019-07-18
1469 The laboratory domestication of zebrafish: from diverse populations to inbred substrains
Suurvaeli, J.; Whiteley, A. R.; Zheng, Y.; Gharbi, K.; Leptin, M.; Wiehe, T.
10.1101/706382 — genetics — Posted on 2019-07-18
1472 Long-term reciprocal gene flow in wild and domestic geese reveals complex domestication history
Heikkinen, M. E.; Ruokonen, M.; White, T. A.; Alexander, M. M.; Gunduz, I.; Dobney, K. M.; Aspi, J.; Searle, J. B.; Pyhäjärvi, T.
10.1101/706226 — evolutionary biology — Posted on 2019-07-18
1474 Leveraging eQTLs to identify individual-level tissue of interest for a complex trait
Majumdar, A.; Giambartolomei, C.; Cai, N.; Kumar Freund, M.; Haldar, T.; Schwarz, T.; Flint, J.; Pasaniuc, B.
10.1101/674226 — genetics — Posted on 2019-07-18
1476 3D imaging of colorectal cancer organoids identifies responses to Tankyrase inhibitors
Badder, L. M.; Hollins, A. J.; Herpers, B.; Yan, K.; Ewan, K. B.; Shone, J. R.; Badder, D. A.; Naven, M.; Ashelford, K.; Hargest, R.; Clarke, A. R.; Esdar, C.; Buchstaller, H.-P.; Wienke, D.; Price, L. S.; Shaw, P. H.; Dale, T.
10.1101/705277 — cancer biology — Posted on 2019-07-18
1478 Engineered inter-species amino acid cross-feeding increases population evenness in a synthetic bacterial consortium
Ziesack, M.; Gibson, T.; Shumaker, A. M.; Oliver, J. K.; Riglar, D. T.; Giessen, T. W.; DiBenedetto, N. V.; Lall, K.; Hsu, B. B.; Bry, L.; Way, J. C.; Silver, P. A.; Gerber, G. K.
10.1101/426171 — synthetic biology — Posted on 2019-07-18
1480 TGFβ in the obese liver mediates conversion of NK cells to a less cytotoxic ILC1-like phenotype
Cuff, A. O.; Sillito, F.; Dertschnig, S.; Hall, A.; Luong, T.; Chakraverty, R.; Male, V.
10.1101/576538 — immunology — Posted on 2019-07-18
1484 The influence of visual cortex on perception is modulated by behavioural state
Russell, L. E.; Yang, Z.; Tan, P. L.; Fisek, M.; Packer, A. M.; Dalgleish, H. W.; Chettih, S.; Harvey, C. D.; Hausser, M.
10.1101/706010 — neuroscience — Posted on 2019-07-18
1485 Lysine demethylase 7a regulates the anterior-posterior development in mouse by modulating the transcription of Hox gene cluster
Higashijima, Y.; Nagai, N.; Kitazawa, T.; Kawamura, Y.; Taguchi, A.; Nakada, N.; Nangaku, M.; Furukawa, T.; Aburatani, H.; Kurihara, H.; Wada, Y.; KANKI, Y.
10.1101/707125 — molecular biology — Posted on 2019-07-18
1486 Simultaneous mRNA and protein quantification at the single-cell level delineates trajectories of CD4+ T-cell differentiation
Trzupek, D.; Dunstan, M.; Cutler, A. J.; Lee, M.; Godfrey, L.; Aschenbrenner, D.; Uhlig, H. H.; Wicker, L.; Todd, J. A.; Ferreira, R. C.
10.1101/706275 — immunology — Posted on 2019-07-18
1491 DNA Methylation Biomarkers Of Myocardial Infarction And Cardiovascular Disease
Fernandez-Sanles, A.; Sayols-Baixeras, S.; Subirana, I.; Senti, M.; Perez-Fernandez, S.; Castro de Moura, M.; Esteller, M.; Marrugat, J.; Elosua, R.
10.1101/707315 — genomics — Posted on 2019-07-18
1492 An integrative ENCODE resource for cancer genomics
Zhang, J.; Lee, D.; Dhiman, V.; Jiang, P.; Xu, J.; McGillivray, P.; Yang, H.; Liu, J.; Meyerson, W.; Clarke, D.; Gu, M.; Li, S.; Lou, S.; Xu, J.; Lochovsky, L.; Ung, M.; Ma, L.; Yu, S.; Cao, Q.; Harmanci, A.; Yan, K.-K.; Sethi, A.; Gursoy, G.; Schoenberg, M. R.; Rozowsky, J.; Warrell, J.; Emani, P.; Yang, Y. T.; Galeev, T.; Kong, X.; Liu, S.; Li, X.; Krishnan, J.; Feng, Y.; Rivera-Mulia, J. C.; Adrian, J.; Broach, J. R.; Bolt, M.; Moran, J.; Fitzgerald, D.; Dileep, V.; Liu, T.; Mei, S.; Sasaki, T.; Trevilla-Garcia, C.; Wang, S.; Wang, Y.; Zang, C.; Wang, D.; Klein, R.; Snyder, M.; Gilbert, D.
10.1101/706424 — genomics — Posted on 2019-07-18
1493 Assessment of a split homing based gene drive for efficient knockout of multiple genes
Kandul, N. P.; Liu, J.; Buchman, A.; Gantz, V. M.; Bier, E.; Akbari, O. S.
10.1101/706929 — genetics — Posted on 2019-07-18
1498 flowEMMi: An automated model-based clustering tool for microbial cytometric data
Ludwig, J.; Hoener zu Siederdissen, C.; Liu, Z.; Stadler, P. F.; Mueller, S.
10.1101/667691 — bioinformatics — Posted on 2019-07-18
1501 Long-term culturing of porcine nodose ganglia
Kuan, S.-P.; Atanasova, K. R.; Guevara, M. V.; Collins, E. N.; Reznikov, L. R.
10.1101/706945 — neuroscience — Posted on 2019-07-18
1505 Thera-SAbDab: the Therapeutic Structural Antibody Database
Raybould, M. I. J.; Marks, C.; Lewis, A. P.; Shi, J.; Bujotzek, A.; Taddese, B.; Deane, C.
10.1101/707521 — immunology — Posted on 2019-07-18
1506 Prioritization of genes driving congenital phenotypes of patients with de novo genomic structural variants
Middelkamp, S.; Vlaar, J.; Giltay, J.; Korzelius, J.; Besselink, N.; Boymans, S.; Janssen, R.; de la Fonteijne, L.; van Binsbergen, E.; van Roosmalen, M.; Hochstenbach, R.; Giachino, D.; Talkowski, M.; Kloosterman, W.; Cuppen, E.
10.1101/707430 — genomics — Posted on 2019-07-18
1509 Societal attention toward extinction threats
Jaric, I.; Bellard, C.; Courchamp, F.; Kalinkat, G.; Meinard, Y.; Roberts, D. L.; Correia, R. A.
10.1101/706911 — ecology — Posted on 2019-07-18
1511 Shear forces drive precise patterning of hair cells in the mammalian inner ear
Cohen, R.; Amir-Zilberstein, L.; Hersch, M.; Woland, S.; Taiber, S.; Matsuzaki, F.; Bergmann, S.; Avraham, K. B.; Sprinzak, D.
10.1101/707422 — developmental biology — Posted on 2019-07-18
1512 Kinase inhibition of G2019S-LRRK2 restores autolysosome formation and function to reduce endogenous alpha-synuclein intracellular inclusions
Obergasteiger, J.; Frapporti, G.; Lamonaca, G.; Pizzi, S.; Picard, A.; Pischedda, F.; Piccoli, G.; Lobbestael, E.; Baekelandt, V.; Hicks, A. A.; Corti, C.; Pramstaller, P. P.; Volta, M.
10.1101/707273 — cell biology — Posted on 2019-07-18
1515 Gut-Liver physiomimetics reveal paradoxical modulation of IBD-related inflammation by short-chain fatty acids
Trapecar, M.; Communal, C.; Velazquez, J.; Maass, C. A.; Huang, Y.-J.; Schneider, K.; Wright, C. W.; Trumper, D. L.; Griffith, L. G.
10.1101/706812 — bioengineering — Posted on 2019-07-18
1516 Elasticity and Topography-Controlled Collagen Hydrogels Mimicking Native Cellular Milieus
Oyama, T. G.; Oyama, K.; Kimura, A.; Yoshida, F.; Ishida, R.; Yamazaki, M.; Miyoshi, H.; Taguchi, M.
10.1101/706952 — bioengineering — Posted on 2019-07-18
1517 The biosynthetic gene cluster of the C-nucleoside antibiotic pyrazomycin with a rare pyrazole moiety
Zhao, G.; Yao, S.; Rothchild, K. W.; Liu, T.; Liu, Y.; Lian, J.; He, H.-Y.; Ryan, K. S.; Du, Y.-L.
10.1101/707406 — biochemistry — Posted on 2019-07-18
1518 Primitive and modern swimmers solve the challenges of turning similarly to achieve high maneuverability
Dabiri, J. O.; Colin, S.; Gemmell, B.; Lucas, K.; Leftwich, M.; Costello, J. H.
10.1101/706762 — zoology — Posted on 2019-07-18
1519 Simulated Plant Images Improve Maize Leaf Counting Accuracy
Miao, C.; Hoban, T. P.; Pages, A.; Xu, Z.; Rodene, E.; Ubbens, J.; Stavness, I.; Yang, J.; Schnable, J. C.
10.1101/706994 — plant biology — Posted on 2019-07-18
1521 A lab-on-a-chip model of glaucoma
Nafian, F.; Kamali Doust Azad, B.; Yazdani, S.; Rasaee, M. J.; Daftarian, N.
10.1101/704510 — neuroscience — Posted on 2019-07-18
1525 P granules protect RNA interference genes from silencing by piRNAs
Ouyang, J. P.; Folkmann, A.; Bernard, L.; Lee, C.-Y.; Seroussi, U.; Charlesworth, A. G.; Claycomb, J. M.; Seydoux, G.
10.1101/707562 — molecular biology — Posted on 2019-07-18
1527 Early diverging fungus Mucor circinelloides lacks centromeric histone CENP-A and displays a mosaic of point and regional centromeres
Navarro-Mendoza, M. I.; Perez-Arques, C.; Panchal, S.; Niolas, F. E.; Mondo, S. J.; Ganguly, P.; Pangilinan, J.; Grigoriev, I. V.; Heitman, J.; Sanyal, K.; Garre, V.
10.1101/706580 — genetics — Posted on 2019-07-18
1528 Modeling the control of bacterial infections via antibiotic-induced proviruses
Clifton, S.; Kim, T.; Chandrashekhar, J. H.; O'Toole, G. A.; Rapti, Z.; Whitaker, R. J.
10.1101/706796 — ecology — Posted on 2019-07-18
1529 Cryo-EM structure of the Hedgehog release protein Dispatched
Cannac, F.; Qi, C.; Falschlunger, J.; Hausmann, G.; Basler, K.; Korkhov, V. M.
10.1101/707513 — biochemistry — Posted on 2019-07-18
1530 Ramified Rolling Circle Amplification for efficient and flexible synthesis of nucleosomal DNA sequences
van Emmerik, C. L.; Gachulincova, I.; Lobbia, V. R.; Daniels, M. A.; Heus, H. A.; Soufi, A.; Nelissen, F. H. T.; van Ingen, H.
10.1101/676528 — biochemistry — Posted on 2019-07-18
1531 A robust benchmark for germline structural variant detection
Zook, J. M.; Hansen, N. F.; Olson, N. D.; Chapman, L. M.; Mullikin, J. C.; Xiao, C.; Sherry, S.; Koren, S.; Phillippy, A. M.; Boutros, P. C.; Sahraeian, S. M. E.; Huang, V.; Rouette, A.; Alexander, N.; Mason, C. C.; Hajirasouliha, I. C.; Ricketts, C. C.; Lee, J.; Tearle, R.; Fiddes, I. T.; Barrio, A. M.; Wala, J.; Carroll, A.; Ghaffari, N.; Rodriguez, O. L.; Bashir, A.; Jackman, S.; Farrell, J. J.; Wenger, A. M.; Alkan, C.; Soylev, A.; Schatz, M. C.; Garg, S.; Church, G.; Marschall, T.; Chen, K.; Fan, X.; English, A. C.; Rosenfeld, J. D.; Zhou, W.; Mills, R. E.; Sage, J. M.; Davis, J. R.; Kais
10.1101/664623 — genomics — Posted on 2019-07-18
1532 Phase-specific manipulation of neural oscillations by transcranial alternating current stimulation
Fiene, M.; Schwab, B. C.; Misselhorn, J.; Herrmann, C. S.; Schneider, T. R.; Engel, A. K.
10.1101/579631 — neuroscience — Posted on 2019-07-18
1534 Lignin-based resistance to Cuscuta campestris in tomato
Jhu, M.-Y.; Farhi, M.; Wang, L.; Philbrook, R. N.; Belcher, M. S.; Nakayama, H.; Zumstein, K. S.; Rowland, S. D.; Ron, M.; Shih, P. M.; Sinha, N. R.
10.1101/706861 — plant biology — Posted on 2019-07-18
1535 A Na2CO3-responsive chitinase gene from Chinese wildrye improve pathogen resistance and saline-alkali stress tolerance in transgenic tobacco and maize
Liu, X. G.; Yu, Y.; Liu, Q.; Deng, S. R.; Jin, X. B.; Yin, Y. J.; Guo, J.; Li, N.; Han, S. P.; Wang, C.; Hao, D. Y.
10.1101/707281 — plant biology — Posted on 2019-07-18
1537 Interaction between induced and natural variation at oil yellow1 delays flowering in maize
Khangura, R. S.; Venkata, B.; Marla, S.; Mickelbart, M.; Dhungana, S.; Braun, D.; Dilkes, B.; Johal, G.
10.1101/706846 — plant biology — Posted on 2019-07-18
1539 The role of the pre-commissural fornix in episodic autobiographical memory and simulation
Williams, A. N.; Ridgeway, S.; Postans, M.; Graham, K. S.; Lawrence, A. D.; Hodgetts, C. J.
10.1101/706150 — neuroscience — Posted on 2019-07-18
1541 Neural correlates of the DMT experience as assessed via multivariate EEG
Timmermann, C.; Roseman, L.; Schartner, M.; Milliere, R.; Williams, L.; Erritzoe, D.; Muthukumaraswamy, S.; Ashton, M.; Bendrioua, A.; Kaur, O.; Turton, S.; Nour, M.; Day, C.; Leech, R.; Nutt, D.; Carhart-Harris, R.
10.1101/706283 — neuroscience — Posted on 2019-07-18
1543 Remodeling of the C. elegans Non-coding RNA Transcriptome by Heat Shock
Schreiner, W. P.; Pagliuso, D. C.; Garrigues, J. M.; Chen, J. S.; Aalto, A. P.; Pasquinelli, A. E.
10.1101/706820 — molecular biology — Posted on 2019-07-18
1548 MATE-Seq: Microfluidic Antigen-TCR Engagement Sequencing
Ng, A. H.; Peng, S.; Xu, A. M.; Noh, W. J.; Guo, K.; Bethune, M. T.; Chour, W.; Choi, J.; Yang, S.; Baltimore, D.; Heath, J. R.
10.1101/706606 — immunology — Posted on 2019-07-18
1549 Peripheral blood cell immunophenotyping reveals distinct subgroups of inflamed depression
Lynall, M.-E.; Turner, L.; Bhatti, J.; Cavanagh, J.; De Boer, P.; Mondelli, V.; Jones, D.; Drevets, W.; Cowen, P.; Harrison, N.; Pariante, C. M.; Pointon, L.; NIMA Consortium, ; Clatworthy, M.; Bullmore, E.
10.1101/706309 — immunology — Posted on 2019-07-18
1550 Major surgery induces acute changes in DNA methylation associated with activation of the immune response.
Sadahiro, R.; Knight, B.; James, F.; Hannon, E.; Charity, J.; Daniels, I.; Burrage, J.; Knox, O.; Crawford, B.; Smart, N. J.; Mill, J.
10.1101/706184 — genomics — Posted on 2019-07-18
1552 Context-dependent gene regulation by transcription factor complexes
Kribelbauer, J. F.; Loker, R. E.; Feng, S.; Rastogi, C.; Abe, N.; Rube, H. T. T.; Bussemaker, H. J.; Mann, R. S.
10.1101/706473 — genomics — Posted on 2019-07-18
1554 Paternal age in rhesus macaques is positively associated with germline mutation accumulation but not with measures of offspring sociability
Wang, R. J.; Thomas, G. W. C.; Raveendran, M.; Harris, A. R.; Doddapaneni, H.; Muzny, D. M.; Capitanio, J. P.; Radivojac, P.; Rogers, J.; Hahn, M. W.
10.1101/706705 — evolutionary biology — Posted on 2019-07-18
1555 Single-gene resolution of locally adaptive genetic variation in Mexican maize
Gates, D. J.; Runcie, D.; Janzen, G. M.; Romero Navarro, A.; Willcox, M.; Sonder, K.; Snodgrass, S.; Rodriguez-Zapata, F.; Sawers, R. J.; Rellan-Alvarez, R.; Buckler, E. S.; Hearne, S.; Hufford, M. B.; Ross-Ibarra, J.
10.1101/706739 — evolutionary biology — Posted on 2019-07-18
1564 Advanced Glycation End-Products Suppress Mitochondrial Function and Proliferative Capacity of Achilles Tendon-Derived Fibroblasts
Patel, S. H.; Yue, F.; Shaw, S. K.; Foguth, R.; Cannon, J. R.; Shannahan, J. H.; Kuang, S.; Sabbaghi, A.; Carroll, C. C.
10.1101/706754 — physiology — Posted on 2019-07-18
1568 IQGAP1 connects phosphoinositide signaling to cytoskeletal reorganization
Yerramilli, V. S.; Ross, A. H.; Lindberg, S. K.; Scarlata, S.; Gericke, A.
10.1101/706465 — biophysics — Posted on 2019-07-18
1569 Regulation of lipid saturation without sensing membrane fluidity
Ballweg, S.; Sezgin, E.; Wunnicke, D.; Haenelt, I.; Ernst, R.
10.1101/706556 — biophysics — Posted on 2019-07-18
1575 Mice tune out not in: Violation of prediction drives auditory saliency
Rogalla, M. M.; Rauser, I.; Schulze, K.; Osterhagen, L.; Hildebrandt, K. J.
10.1101/633388 — animal behavior and cognition — Posted on 2019-07-18
1576 Platelet Thrombus Formation in eHUS is Prevented by Anti-MBL2
Kushak, R.; Boyle, D.; Rosales, I.; Ingelfinger, J.; Stahl, G.; Ozaki, M.; Colvin, R.; Grabowski, E.
10.1101/707364 — pathology — Posted on 2019-07-18
1577 Medial prefrontal decoupling from the default mode network benefits memory
Mueller, N. C.; Dresler, M.; Janzen, G.; Beckmann, C. F.; Fernandez, G.; Kohn, N.
10.1101/706051 — neuroscience — Posted on 2019-07-18
1578 Phazolicin - a Novel Thiazole/Oxazole-Modified Peptide Inhibiting the Bacterial Ribosome in a Species-Specific Way.
Travin, D. Y.; Watson, Z. L.; Metelev, M.; Ward, F. R.; Osterman, I. A.; Khven, I. M.; Khabibullina, N. F.; Serebryakova, M.; Mergaert, P.; Polikanov, Y. S.; Cate, J. H. D.; Severinov, K.
10.1101/705970 — molecular biology — Posted on 2019-07-18
1579 International lineages of Salmonella enterica serovars isolated from chicken farms, Wakiso District, Uganda
Ball, T.; Fedorka-cray, P. J.; Farias Marinho do Monte, D.; Aidara-Kane, A.; Ru, H.; Thakur, S.; Ejobi, F.; Matheu, J.
10.1101/707372 — microbiology — Posted on 2019-07-18
1581 Longitudinal single cell transcriptomics reveals Krt8+ alveolar epithelial progenitors in lung regeneration
Strunz, M.; Simon, L. M.; Ansari, M.; Mattner, L. F.; Angelidis, I.; Mayr, C. H.; Kathiriya, J.; Yee, M.; Ogar, P.; Sengupta, A.; Kukhtevich, I.; Schneider, R.; Zhao, Z.; Neumann, J. H. L.; Behr, J.; Voss, C.; Stoeger, T.; Lehmann, M.; Koenigshoff, M.; Burgstaller, G.; O'Reilly, M.; Chapman, H. A.; Theis, F. J.; Schiller, H. B.
10.1101/705244 — systems biology — Posted on 2019-07-18
1582 Genetic combination risk for schizophrenia
Oishi, K.; Niitsu, T.; Kanahara, N.; Hashimoto, T.; Komatsu, H.; Sasaki, T.; Takase, M.; Sato, Y.; Iyo, M.
10.1101/478958 — neuroscience — Posted on 2019-07-18
1584 7 Tesla MRI of the ex vivo human brain at 100 micron resolution
Edlow, B. L.; Mareyam, A.; Horn, A.; Polimeni, J.; Witzel, T.; Tisdall, M. D.; Augustinack, J.; Stockman, J. P.; Diamond, B. R.; Stevens, A.; Tirrell, L. S.; Folkerth, R. D.; Wald, L. L.; Fischl, B.; van der Kouwe, A.
10.1101/649822 — neuroscience — Posted on 2019-07-18
1588 Abundance estimation from genetic mark-recapture data when not all sites are sampled: an example with the bowhead whale
Frasier, T. R.; Petersen, S. D.; Postma, L.; Johnson, L.; Heide-Jorgensen, M. P.; Ferguson, S. H.
10.1101/549394 — zoology — Posted on 2019-07-18
1590 Respiration competes with theta for modulating parietal cortex neurons
Jung, F.; Yanovsky, Y.; Brankack, J.; Tort, A. B. L.; Draguhn, A.
10.1101/707331 — neuroscience — Posted on 2019-07-18
1593 Functional Annotation of Human Long Non-Coding RNAs via Molecular Phenotyping
Ramilowski, J. A.; Yip, C. W.; Agrawal, S.; Chang, J.-C.; Ciani, Y.; Kulakovskiy, I. V.; Mendez, M.; Ooi, J. L. C.; Petri, A.; Roos, L.; Severin, J.; Yasuzawa, K.; Ouyang, J. F.; Parkinson, N.; Abugessaisa, I.; Akalin, A.; Antonov, I.; Arner, E.; Bonetti, A.; Bono, H.; Borsari, B.; Brombacher, F.; Cannistraci, C.; CAMERON, C. J.; Cardenas, R.; Cardon, M.; Chang, H.; Dostie, J.; Ducoli, L.; Favorov, A.; Fort, A.; Garrido, D.; Gil, N.; Gimenez, J.; Guler, R.; Handoko, L.; Harshbarger, J.; Hasegawa, A.; Hasegawa, Y.; Hashimoto, K.; Hayatsu, N.; Heutink, P.; Hirose, T.; Imada, E. L.; Itoh, M.; Kac
10.1101/700864 — genomics — Posted on 2019-07-18
1594 Reconstruction of networks with direct and indirect genetic effects
Kruijer, W.; Behrouzi, P.; Bustos Korts, D.; Rodriguez-Alvarez, M. X.; Mahmoudi, S. M.; Yandell, B.; Wit, E.; Van Eeuwijk, F.
10.1101/646208 — genetics — Posted on 2019-07-18
1595 Copulas and their potential for ecology
Ghosh, S.; Sheppard, L. W.; Holder, M. T.; Loecke, T. E.; Reid, P. C.; Bever, J. D.; Reuman, D. C.
10.1101/650838 — ecology — Posted on 2019-07-18
1597 SynGAP Splice Variants Display Heterogeneous Spatio-Temporal Expression And Subcellular Distribution In The Developing Mammalian Brain
Gou, G.; Roca-Fernandez, A.; Kilinc, M.; Serrano, E.; Reig-Viader, R.; Araki, Y.; Huganir, R. L.; de Quintana-Schmidt, C.; Rumbaugh, G.; Bayes, A.
10.1101/681148 — neuroscience — Posted on 2019-07-18
1599 Defining the molecular state of human cancer
Sahu, B.; Pihlajamaa, P.; Zhang, K.; Palin, K.; Ahonen, S.; Cervera, A.; Ristimaki, A.; Aaltonen, L.; Hautaniemi, S.; Taipale, J.
10.1101/525600 — genomics — Posted on 2019-07-18
1601 Gene networks with transcriptional bursting recapitulate rare transient coordinated expression states in cancer
Schuh, L.; Saint-Antoine, M.; Sanford, E.; Emert, B.; Singh, A.; Marr, C.; Goyal, Y.; Raj, A.
10.1101/704247 — systems biology — Posted on 2019-07-18
1603 Decreased Directed Functional Connectivity in the Psychedelic State
Barnett, L.; Muthukumaraswamy, S. D.; Carhart-Harris, R. L.; Seth, A. K.
10.1101/703660 — neuroscience — Posted on 2019-07-18
1604 tRNA 2-O-methylation modulates small RNA silencing and life span in Drosophila.
Angelova, M. T.; Dimitrova, D. G.; da Silva, B.; Marchand, V.; Goyenvalle, C.; Achour, C.; Jacquier, C.; Bourguignon-Igel, V.; Shehzada, S.; Lence, T.; Guerineau, V.; Roignant, J.-Y.; Antoniewski, C.; Teysset, L.; Bregeon, D.; Schaefer, M. R.; Motorin, Y.; Carre, C.
10.1101/699934 — molecular biology — Posted on 2019-07-18
1605 Unlinked rRNA genes are widespread among Bacteria and Archaea
Brewer, T. E.; Albertsen, M.; Edwards, A.; Kirkegaard, R.; Rocha, E. P. C.; Fierer, N.
10.1101/705046 — microbiology — Posted on 2019-07-18
1606 A canstatin-derived peptide provides insight into the role of Capillary Morphogenesis Gene 2 in angiogenic regulation and matrix uptake
Finnell, J.; Tsang, T.-M.; Cryan, L.; Garrard, S.; Lee, S. L.; Ackroyd, P. C.; Rogers, M.; Christensen, K.
10.1101/705459 — biochemistry — Posted on 2019-07-18
1607 A systems chemoproteomic analysis of acyl-CoA/protein interactions
Levy, M. J.; Montgomery, D. C.; Sardiu, M. E.; Bergholtz, S. E.; Nance, K. D.; Montano, J.; Thorpe, A. L.; Fox, S. D.; Lin, Q.; Andresson, T.; Florens, L.; Washburn, M. P.; Meier, J. L.
10.1101/665281 — biochemistry — Posted on 2019-07-18
1608 Carry-over effects of temperature and pCO2 across multiple Olympia oyster populations
Spencer, L. H.; Venkataraman, Y. R.; Crim, R.; Ryan, S.; Horwith, M. J.; Roberts, S. B.
10.1101/616375 — physiology — Posted on 2019-07-18
1610 Impaired alanine transport or exposure to D-cycloserine increases the susceptibility of MRSA to beta-lactam antibiotics
Gallagher, L.; Shears, R. K.; Fingleton, C.; Alvarez, L.; Waters, E.; Clarke, J.; Bricio-Moreno, L.; Campbell, C.; Yadav, A.; Razvi, F.; O'Neill, E.; O'Neill, A.; Cava, F.; Fey, P.; Kadioglu, A.; O'Gara, J. P.
10.1101/616920 — microbiology — Posted on 2019-07-18
1611 Population structure determined by comparative amplicon gene sequencing in biofilm and planktonic bacterial communities from pesticide-contaminated water
Lima, J.; Moreira, C.; Costa, G.; Freitas, P.; Olchanheski, L.; Pileggi, S.; Etto, R.; Staley, C.; Sadowsky, M.; Pileggi, M.
10.1101/705467 — microbiology — Posted on 2019-07-18
1616 Validation of a Miniaturized Permeability Assay Compatible with CRISPR-Mediated Genome-Wide Screen
Simonneau, C.; Yang, J.; Kong, X.; Kilker, R.; Edelstein, L.; Fortina, P.; Londin, E.; Horowitz, A.
10.1101/471854 — cell biology — Posted on 2019-07-18
1620 Weak and uneven associations of home, neighborhood and school environments with stress hormone output across multiple time scales.
Malanchini, M.; Engelhardt, L. E.; Raffington, L.; Sabhlok, A.; Grotzinger, A. D.; Briley, D. A.; Madole, J. W.; Freis, S. M.; Patterson, M. W.; Harden, K. P.; Tucker-Drob, E. M.
10.1101/705996 — physiology — Posted on 2019-07-18
1623 Heparanase-2 protects from endothelial injury by inhibiting TLR4 signaling
Kiyan, Y.; Tkachuk, S.; Kurselis, K.; Shushakova, N.; Stahl, K.; Dawodu, D.; Kiyan, R.; Chichkov, B. N.; Haller, H.
10.1101/705939 — cell biology — Posted on 2019-07-17
1625 Long live the king: chromosome-level assembly of the lion (Panthera leo) using linked-read, Hi-C, and long read data
Armstrong, E. E.; Taylor, R. W.; Miller, D. E.; Kaelin, C.; Barsh, G.; Hadly, E. A.; Petrov, D.
10.1101/705483 — genomics — Posted on 2019-07-17
1626 Highly multiplexed immunofluorescence images and single-cell data of immune markers in tonsil and lung cancer
Rashid, R.; Gaglia, G.; Chen, Y.-A.; Lin, J.-R.; Du, Z.; Maliga, Z.; Schapiro, D.; Yapp, C.; Muhlich, J.; Sokolov, A.; Sorger, P.; Santagata, S.
10.1101/704114 — cancer biology — Posted on 2019-07-17
1628 An Evolutionarily Conserved Receptor-like Kinases Signaling Module Controls Cell Wall Integrity During Tip-Growth
Westermann, J.; Streubel, S.; Franck, C. M. M.; Lentz, R.; Dolan, L.; Boisson-Dernier, A.
10.1101/704601 — plant biology — Posted on 2019-07-17
1629 Evaluation of 21 Brassica microgreens growth and nutritional profile grown under different red, blue and green LEDs combination
Kamal, K. Y.; El-Tantawy, A. A.; Abdel Moneim, D.; Abdel Salam, A.; Qabil, N.; Ash-shormillesy, S. M. A. I.; Attia, A.; Ali, M. A. S.; Herranz, R.; El-Esawi, M. A.; Nassrallah, A. A.
10.1101/705806 — plant biology — Posted on 2019-07-17
1631 Muc5b-deficient mice develop early histological lung abnormalities
Valque, H.; Gouyer, V.; Duez, C.; Leboeuf, C.; Marquillies, P.; Lebert, M.; Plet, S.; Ryffel, B.; Janin, A.; Gottrand, F.; Desseyn, J.-L.
10.1101/705962 — physiology — Posted on 2019-07-17
1632 Recombinase system-dependent copackaging strategy for highly efficient neurocircuit tracing
Sun, P.; Jin, S.; Tao, S.; Wang, J.; Li, A.; Li, N.; Wu, Y.; Kuang, J.; Liu, Y.; Wang, L.; Lin, H.; Lv, X.; Liu, X.; Peng, J.; Zhang, S.; Xu, M.; Luo, Z.; He, X.; Li, X.; Zeng, S.; Zhang, Y.-H.; Xu, F.
10.1101/705772 — neuroscience — Posted on 2019-07-17
1633 Identification of a major QTL and associated marker for high arabinoxylan fibre in white wheat flour
Lovegrove, A.; Wingen, L.; Plummer, A.; Wood, A.; Passmore, D.; Kosik, O.; Freeman, J.; Mitchell, R.; Ulker, M.; Tremmel-Bede, K. T.-B.; Rakszegi, M.; Bedo, Z.; Charmet, G.; Petterant, M.-R.; Leverington Waite, M.; Simon Orford, S.; Burridge, A.; Pellny, T.; Shewry, P.; Griffiths, S.
10.1101/705343 — genetics — Posted on 2019-07-17
1634 A Multistage Sequencing Strategy Pinpoints Many Novel and Candidate Disease Alleles for Orphan Disease Emery-Dreifuss Muscular Dystrophy and Supports Gene Misregulation as its Pathomechanism
Meinke, P.; Kerr, A. R. W.; Czapiewski, R.; de las Heras, J. I.; Harris, E.; Koelbel, H.; Muntoni, F.; Schara, U.; Straub, V.; Schoser, B.; Wehnert, M.; Schirmer, E. C.
10.1101/705780 — genetics — Posted on 2019-07-17
1636 Visualisation of ribosomes in Drosophila axons using Ribo-BiFC
Singh, A. K.; Abdullahi, A.; Soller, M.; David, A.; Brogna, S.
10.1101/706358 — cell biology — Posted on 2019-07-17
1638 Variants in the degron of AFF3 cause a multi-system disorder with mesomelic dysplasia, horseshoe kidney and developmental and epileptic encephalopathy
Voisin, N.; Schnur, R. E.; Douzgou, S.; Hiatt, S. M.; Rustad, C. F.; Brown, N. J.; Earl, D. L.; Keren, B.; Levchenko, O.; Geuer, S.; Amor, D.; Brusco, A.; Bebin, E. M.; Cappuccio, G.; Charrow, J.; Chatron, N.; Cooper, G. M.; Dadali, E.; Delafontaine, J.; Del Giudice, E.; Douglas, G.; Funari, T.; Giannuzzi, G.; Guex, N.; Heron, D.; Holla, O. L.; Hurst, A. C. E.; Juusola, J.; Kronn, D.; Lavrov, A.; Lee, C.; Merckoll, E.; Mikhaleva, A.; Norman, J.; Pradervand, S.; Sanders, V.; Sirchia, F.; Takenouchi, T.; Tanaka, A. J.; Taska-Tench, H.; Tonne, E.; Tveten, K.; Vitiello, G.; Uehara, T.; Nava, C.; Y
10.1101/693937 — genetics — Posted on 2019-07-17
1640 Emergence of artemisinin-resistant Plasmodium falciparum with kelch13 C580Y mutations on the island of New Guinea
Miotto, O.; Sekihara, M.; Tachibana, S.-I.; Yamauchi, M.; Pearson, R. D.; Amato, R.; Goncalves, S.; Mehra, S.; Noviyanti, R.; Marfurt, J.; Auburn, S.; Price, R. N.; Mueller, I.; Ikeda, M.; Mori, T.; Hirai, M.; Tavul, L.; Hetzel, M.; Laman, M.; Barry, A.; Ringwald, P.; Ohashi, J.; Hombhanje, F.; Kwiatkowski, D. P.; Mita, T.
10.1101/621813 — microbiology — Posted on 2019-07-17
1642 Chemogenetic evidence that rapid neuronal de novo protein synthesis is required for consolidation of long-term memory
Shrestha, P.; Ayata, P.; Herrero Vidal, P. M.; Longo, F.; Gastone, A.; LeDoux, J.; Heintz, N.; Klann, E.
10.1101/704965 — neuroscience — Posted on 2019-07-17
1646 The influence of visual cortex on perception is modulated by behavioural state
Russell, L. E.; Yang, Z.; Pei Tan, L.; Fisek, M.; Packer, A. M.; Dalgleish, H. W.; Chettih, S.; Harvey, C. D.; Hausser, M.
10.1101/706010 — neuroscience — Posted on 2019-07-17
1650 Illuminating microbial species-specific effects on organic matter remineralization in marine sediments
Mahmoudi, N.; Enke, T. N.; Beaupre, S. R.; Teske, A. P.; Cordero, O. X.; Pearson, A.
10.1101/705087 — microbiology — Posted on 2019-07-17
1651 Detailed Regulatory Interaction Map of the Human Heart Facilitates Gene Discovery for Cardiovascular Disease
Bianchi, V.; Geeven, G.; Tucker, N.; Hilvering, C. R. E.; Hall, A. W.; Roselli, C.; Hill, M. C.; Martin, J. F.; Margulies, K. B.; Ellinor, P. T.; de Laat, W.
10.1101/705715 — genomics — Posted on 2019-07-17
1654 Distinct neural markers for intentional and unintentional task unrelated thought
Martel, A.; Arvaneh, M.; Robertson, I. H.; Smallwood, J.; Dockree, P.
10.1101/705061 — neuroscience — Posted on 2019-07-17
1657 Hyperinsulinemia promotes HMGB1 release leading to inflammation induced systemic insulin resistance: An interplay between pancreatic beta-cell and peripheral organs
Choubey, A.; Kar, A. K.; Girdhar, K.; Chattopadhyay, T.; Dogra, S.; Kushwaha, S.; Medhi, B.; Bhansali, A.; Mantri, C. K.; Seetharam, U. K.; Ghosh, D.; Mondal, P.
10.1101/705103 — physiology — Posted on 2019-07-17
1658 Population genomics of the Viking world
Margaryan, A.; Lawson, D. J.; Sikora, M.; Racimo, F.; Rasmussen, S.; Moltke, I.; Cassidy, L.; Jorsboe, E.; Ingason, A.; Pedersen, M. W.; Korneliussen, T. S.; Wilhelmson, H.; Bus, M. M.; de Barros Damgaard, P.; Martiniano, R.; Renaud, G.; Bherer, C.; Moreno-Mayar, J. V.; Fotakis, A. K.; Allen, M.; Molak, M.; Cappellini, E.; Scorrano, G.; Buzhilova, A.; Fox, A. M.; Albrechtsen, A.; Schutz, B.; Skar, B.; Arcini, C. A.; Falys, C. G.; Hedenstierna-Jonson, C.; Blaszczyk, D.; Pezhemsky, D.; Turner-Walker, G.; Gestsdottir, H.; Lundstrom, I.; Gustin, I.; Mainland, I.; Potekhina, I.; Muntoni, I. M.; Che
10.1101/703405 — genetics — Posted on 2019-07-17
1660 Ethylene-mediated nitric oxide depletion pre-adapts plants to hypoxia stress
Hartman, S.; Liu, Z.; van Veen, H.; Vicente, J.; Reinen, E.; Martopawiro, S.; Zhang, H.; van Dongen, N.; Bosman, F.; Bassel, G. W.; Visser, E. J. W.; Bailey-Serres, J.; Theodoulou, F. L.; Hebelstrup, K. H.; Gibbs, D. J.; Holdsworth, M. J.; Sasidharan, R.; Voesenek, L. A. C. J.
10.1101/705194 — plant biology — Posted on 2019-07-17
1661 Comparison of Illumina MiSeq and the Ion Torrent PGM and S5 platforms for whole-genome sequencing of picornaviruses and caliciviruses
Marine, R. L.; Magana, L. C.; Castro, C. J.; Zhao, K.; Montmayeur, A.; Schmidt, A.; Diez-Valcarce, M.; Ng, T. F. F.; Vinje, J.; Burns, C. C.; Nix, W. A.; Rota, P. A.; Oberste, M. S.
10.1101/705632 — microbiology — Posted on 2019-07-17
1662 Finite Element and deformation analyses predict pattern of bone failure in loaded zebrafish spines
Newman, E.; Kague, E.; Aggleton, J. A.; Fernee, C.; Robson Brown, K.; Hammond, C. L.
10.1101/703629 — physiology — Posted on 2019-07-17
1663 Blastula stage specification of avian neural crest
Prasad, M.; Uribe-Querol, E.; Marquez, J.; Vadasz, S.; Yardley, N.; Shelar, P.; Charney, R.; Garcia-Castro, M. I.
10.1101/705731 — developmental biology — Posted on 2019-07-17
1665 C6orf203 controls OXPHOS function through modulation of mitochondrial protein biosynthesis
Palacios-Zambrano, S.; Vazquez-Fonseca, L.; Gonzalez-Paramos, C.; Mamblona, L.; Sanchez-Caballero, L.; Nijtmans, L. G. J.; Garesse, R.; Fernandez-Moreno, M. A.
10.1101/704403 — molecular biology — Posted on 2019-07-17
1666 Identification of 2CS-CHXT operon signature of chlorhexidine tolerance among Enterococcus faecium
Duarte, B.; Pereira, A. P.; Freitas, A. R.; Coque, T. M.; Hammerum, A. M.; Hasman, H.; Antunes, P.; Peixe, L.; Novais, C.
10.1101/704346 — microbiology — Posted on 2019-07-17
1671 Automated sample preparation with SP3 for low-input clinical proteomics
Mueller, T.; Kalxdorf, M.; Longuespee, R.; Kazdal, D. N.; Stenzinger, A.; Krijgsveld, J.
10.1101/703413 — molecular biology — Posted on 2019-07-17
1672 Nanopore direct RNA sequencing maps an Arabidopsis N6 methyladenosine epitranscriptome
Simpson, G. G.; Barton, G. J.; Parker, M. T.; Sherwood, A. V.; Knop, K.; Schurch, N. J. E.; Mackinnon, K.; Gould, P. D.; Hall, A. J.
10.1101/706002 — molecular biology — Posted on 2019-07-17
1674 Diet diversification shapes broad-scale distribution patterns in European bats
Alberdi, A.; Razgour, O.; Aizpurua, O.; Novella-Fernandez, R.; Aihartza, J.; Budinski, I.; Garin, I.; Ibanez, C.; Izagirre, E.; Rebelo, H.; Russo, D.; Vlaschenko, A.; Zhelyazkova, V.; Zrncic, V.; Gilbert, M. T. P.
10.1101/704759 — ecology — Posted on 2019-07-17
1676 DNA mismatches reveal widespread conformational penalties in protein-DNA recognition
Afek, A.; Shi, H.; Rangadurai, A.; Sahay, H.; Al-Hashimi, H. M.; Gordan, R.
10.1101/705558 — biophysics — Posted on 2019-07-17
1679 Longitudinal single cell transcriptomics reveals Krt8+ alveolar epithelial progenitors in lung regeneration
Strunz, M.; Simon, L. M.; Ansari, M.; Mattner, L. F.; Angelidis, I.; Mayr, C. H.; Kathiriya, J.; Yee, M.; Ogar, P.; Sengupta, A.; Kukhtevich, I.; Schneider, R.; Zhao, Z.; Neumann, J. H. L.; Behr, J.; Voss, C.; Stoeger, T.; Lehmann, M.; Koenigshoff, M.; Burgstaller, G.; O'Reilly, M.; Chapman, H. A.; Theis, F. J.; Schiller, H. B.
10.1101/705244 — systems biology — Posted on 2019-07-17
1680 Natural Music Evokes Correlated EEG Responses Reflecting Temporal Structure and Beat
Kaneshiro, B.; Nguyen, D. T.; Norcia, A. M.; Dmochowski, J. P.; Berger, J.
10.1101/705517 — neuroscience — Posted on 2019-07-17
1683 Population structure determined by comparative amplicon gene sequencing in biofilm and planktonic bacterial communities from pesticide-contaminated water
Lima, J.; Moreira, C.; Costa, G.; Freitas, P.; Olchanheski, L.; Pileggi, S.; Etto, R.; Staley, C.; Sadowsky, M.; Pileggi, M.
10.1101/705467 — microbiology — Posted on 2019-07-17
1686 Isolation of a putative S-layer protein from anammox biofilm extracellular matrix using ionic liquid extraction
Lan Li, W.; NATARAJAN, G.; Boleij, M.; Thi, S. S.; Winnerdy, F. R.; Mugunthan, S.; Lu, Y.; Lee, J.-M.; Lin, Y.; Loosdrecht, M. v.; Law, Y.; Kjelleberg, S.; Seviour, T. W.
10.1101/705566 — bioengineering — Posted on 2019-07-17
1689 BIN overlap confirms transcontinental distribution of pest aphids (Hemiptera: Aphididae)
Naseem, M. T.; Ashfaq, M.; Khan, A. M.; Rasool, A.; Asif, M.; Hebert, P. D. N.
10.1101/705889 — ecology — Posted on 2019-07-17
1691 Bile acids and bilirubin effects on osteoblastic gene profile. Implications in the pathogenesis of osteoporosis in liver diseases.
Ruiz-Gaspa, S.; Guanabens, N.; Jurado-Gonzalez, S.; Dubreuil, M.; Combalia, A.; Peris, P.; Monegal, A.; Pares, A.
10.1101/705871 — pathology — Posted on 2019-07-17
1693 First Indian report on Genome-wide Comparison of Multidrug-Resistant Escherichia coli from Blood Stream Infections
Devanga Ragupathi, N. K.; Balaji, V.; Muthuirulandi Sethuvel, D. P.; Anandan, S.; Vasudevan, K.; Neeravi, A. R.; Daniel, J. L. K.; Sathyendra, S.; Iyadurai, R.; Mutreja, A.
10.1101/705905 — genomics — Posted on 2019-07-17
1694 CRISPR-Cas9 modified bacteriophage for treatment of Staphylococcus aureus induced osteomyelitis and soft tissue infection
Horstemeyer, L. K.; Park, J.; Swanson, E. A.; Beard, M. C.; McCabe, E. M.; Rourke, A. S.; Seo, K. S.; Priddy, L. B.
10.1101/705830 — bioengineering — Posted on 2019-07-17
1698 Multiple cyanotoxin congeners produced by sub-dominant cyanobacterial taxa in riverine cyanobacterial and algal mats
Kelly, L. T.; Bouma-Gregson, K.; Puddick, J.; Fadness, R.; Ryan, K. G.; Davis, T. W.; Wood, S. A.
10.1101/705848 — ecology — Posted on 2019-07-17
1700 The immunomodulatory effect of IrSPI, a tick salivary gland serine protease inhibitor involved in Ixodes ricinus tick feeding
Blisnick, A. A.; Simo, L.; Grillon, C.; Fasani, F.; Brule, S.; Le Bonniec, B.; Prina, E.; Marsot, M.; Relmy, A.; Blaise-Boisseau, S.; Richardson, J.; Bonnet, S. I.
10.1101/705921 — animal behavior and cognition — Posted on 2019-07-17
1702 Genetic basis of susceptibility to Diplodia sapinea and Armillaria ostoyae in maritime pine
Hurel, A.; de Miguel, M.; Dutech, C.; Desprez-Loustau, M.-L.; Plomion, C.; Rodriguez-Quilon, I.; Cyrille, A.; Guzman, T.; Alia, R.; Gonzalez-Martinez, S. C.; Budde, K. B.
10.1101/699389 — genetics — Posted on 2019-07-17
1703 Fast, 3D isotropic imaging of whole mouse brain using multi-angle-resolved subvoxel SPIM
Nie, J.; Liu, S.; Yu, T.; Li, Y.; Ping, J.; Wan, P.; Zhao, F.; Huang, Y.; Mei, W.; Zeng, S.; Zhu, D.; Fei, P.
10.1101/704387 — bioengineering — Posted on 2019-07-17
1704 Profiling the E. coli Membrane Interactome Captured in Peptidisc Libraries
Young, J. W.; Stacey, G.; Carlson, M.; Wason, I.; Zhao, Z.; Rattray, D. G.; Scott, N.; Kerr, C.; Babu, M.; Foster, L.; Duong, F.
10.1101/705418 — biochemistry — Posted on 2019-07-17
1706 A canstatin-derived peptide provides insight into the role of Capillary Morphogenesis Gene 2 in angiogenic regulation and matrix uptake
Finnell, J.; Tsang, T.-M.; Cryan, L. C.; Garrard, S.; Lee, S. L.; Ackroyd, P. C.; Rogers, M.; Christensen, K.
10.1101/705459 — biochemistry — Posted on 2019-07-17
1708 Differential Tractography as a Track-Based Biomarker for Neuronal Injury
Yeh, F.-C.; Zaydan, I. M.; Suski, V. R.; Lacomis, D.; Richardson, R. M.; Maroon, J.; Barrios-Martinez, J.
10.1101/576025 — neuroscience — Posted on 2019-07-16
1709 Genetic and functional diversification of chemosensory pathway receptors in filarial nematode parasites
Wheeler, N. J.; Heimark, Z. W.; Airs, P. M.; Mann, A.; Bartholomay, L. C.; Zamanian, M.
10.1101/683060 — microbiology — Posted on 2019-07-16
1710 Accurate Modeling of Brain Responses to Speech
Wong, D. D. E.; Di Liberto, G. M.; de Cheveigne, A.
10.1101/509307 — neuroscience — Posted on 2019-07-16
1713 Coupling Day Length Data and Genomic Prediction tools for Predicting Time-Related Traits under Complex Scenarios
Jarquin, D.; Kajiya-Kanegae, H.; Taishen, C.; Yabe, S.; Persa, R.; Yu, J.; Nakagawa, H.; Yamazaki, M.; Iwata, H.
10.1101/703488 — genomics — Posted on 2019-07-16
1720 Proteins required for vacuolar function are targets of lysine polyphosphorylation in yeast
McCarthy, L.; Bentley-DeSousa, A.; Denoncourt, A.; Tseng, Y.-C.; Gabriel, M.; Downey, M.
10.1101/697847 — molecular biology — Posted on 2019-07-16
1721 Assembly of hundreds of novel bacterial genomes from the chicken caecum
Glendinning, L.; Stewart, R. D.; Pallen, M. J.; Watson, K. A.; Watson, M.
10.1101/699843 — microbiology — Posted on 2019-07-16
1722 Gut microbiota structure differs between honey bees in winter and summer
Kesnerova, L.; Emery, O.; Troilo, M.; Erkosar, B.; Engel, P.
10.1101/703512 — microbiology — Posted on 2019-07-16
1724 RecV recombinase system for in vivo targeted optogenomic modifications of single cells or cell populations
Yao, S.; Yuan, P.; Ouellette, B.; Zhou, T.; Mortrud, M.; Balaram, P.; Chatterjee, S.; Wang, Y.; Daigle, T. L.; Tasic, B.; Kuang, X.; Gong, H.; Luo, Q.; Zeng, S.; Curtright, A.; Dhaka, A.; Kahan, A.; Gradinaru, V.; Chrapkiewicz, R.; Schnitzer, M.; Zeng, H.; Cetin, A.
10.1101/553271 — neuroscience — Posted on 2019-07-16
1725 Enhanced biodegradation of naphthalene by Pseudomonas sp. consortium immobilized in calcium alginate beads
Dutta, K.; Shityakov, S.; Khalifa, I.; Ballav, S.; Jana, D.; Manna, T.; Karmakar, M.; Raul, P.; Guchhait, K. C.; Ghosh, C.
10.1101/631135 — microbiology — Posted on 2019-07-16
1727 Common gardens in teosintes reveal the establishment of a syndrome of adaptation to altitude
Fustier, M.-A.; Martinez-Ainsworth, N. E.; Aguirre-Liguori, J.; Venon, A.; Corti, H.; Rousselet, A.; Dumas, F.; Dittberner, H.; Camarena, M. G.; Grimanelli, D.; Ovaskainen, O.; Falque, M.; Moreau, L.; de Meaux, J.; Montes-Hernandez, S.; Eguiarte, L. E.; Vigouroux, Y.; Manicacci, D.; Tenaillon, M. I.
10.1101/563585 — evolutionary biology — Posted on 2019-07-16
1728 Disrupting β-catenin dependent Wnt signaling activates an invasive gene program predictive of colon cancer progression
Chen, G. T.; Tifrea, D. F.; Murad, R.; Lyou, Y.; Mortazavi, A.; Edwards, R. A.; Waterman, M. L.
10.1101/667030 — cancer biology — Posted on 2019-07-16
1729 Experimental and Computational Evidence for Self-Assembly of Mitochondrial UCP2 in Lipid Bilayers
Ardalan, A.; Uwumarenogie, S.; Fish, M.; Sowlati-Hashjin, S.; Karttunen, M.; Smith, M.; Jelokhani-Niaraki, M.
10.1101/430835 — biophysics — Posted on 2019-07-16
1730 Handling Noise in Protein Interaction Networks
Correia, F. B.; Coelho, E. D.; Oliveira, J. L.; Arrais, J. P.
10.1101/527606 — bioinformatics — Posted on 2019-07-16
1731 The role of structural pleiotropy and regulatory evolution in the retention of heteromers of paralogs
Marchant, A.; Cisneros, A.; Dube, A. K.; Gagnon-Arsenault, I.; Ascencio, D.; Jain, H.; Aube, S.; Eberlein, C.; Evans-Yamamoto, D.; Yachie, N.; Landry, C. R.
10.1101/564401 — evolutionary biology — Posted on 2019-07-16
1738 Demography, genetic, and extinction process in a spatially structured population of lekking bird
Cayuela, H.; Prunier, J. G.; Laporte, M.; Gippet, J.; Boualit, L.; Preiss, F.; Laurent, A.; Foletti, F.; Jacob, G.
10.1101/705301 — ecology — Posted on 2019-07-16
1742 Epidemiology of human culture: parietal rock art requires high population density
Walker, R.; Eriksson, A.; Ruiz, C. M.; Newton, T. H.; Casalegno, F.
10.1101/705137 — paleontology — Posted on 2019-07-16
1743 The Evolutionary History of Common Genetic Variants Influencing Human Cortical Surface Area
Tilot, A. L.; Khramtsova, E. A.; Grasby, K.; Jahanshad, N.; Painter, J.; Colodro Conde, L.; Bralten, J.; Hibar, D. P.; Lind, P.; Liu, S.; Brotman, S. M.; Thompson, P. M.; Medland, S. E.; Macciardi, F.; Stranger, B. E.; Davis, L. K.; Fisher, S. E.; Stein, J.
10.1101/703793 — neuroscience — Posted on 2019-07-16
1746 An epigenetic predictor of death captures multi-modal measures of brain health
Hillary, R. F.; Stevenson, A. J.; Cox, S. R.; McCartney, D. L.; Harris, S. E.; Seeboth, A.; Higham, J.; Sproul, D.; Taylor, A. M.; Redmond, P.; Corley, J.; Pattie, A.; del. C Valdes Hernandez, M.; Munoz-Maniega, S.; Bastin, M. E.; Wardlaw, J. M.; Horvath, S.; Ritchie, C. W.; Spires-Jones, T. L.; McIntosh, A. M.; Evans, K. L.; Deary, I. J.; Marioni, R. E.
10.1101/703504 — neuroscience — Posted on 2019-07-16
1752 Unlinked rRNA genes are widespread among Bacteria and Archaea
Brewer, T. E.; Albertsen, M.; Edwards, A.; Kirkegaard, R.; Rocha, E. P. C.; Fierer, N.
10.1101/705046 — microbiology — Posted on 2019-07-16
1754 Decontamination of ambient RNA in single-cell RNA-seq with DecontX
Yang, S.; Corbett, S. E.; Koga, Y.; Wang, Z.; Johnson, W. E.; Yajima, M.; Campbell, J. D.
10.1101/704015 — bioinformatics — Posted on 2019-07-16
1756 SEQUIN multiscale imaging of mammalian central synapses reveals loss of synaptic microconnectivity resulting from diffuse traumatic brain injury
Sauerbeck, A. D.; Gangolli, M.; Reitz, S. J.; Salyards, M. H.; Kim, S. H.; Hemingway, C.; Makkapati, T.; Kerschensteiner, M.; Brody, D. L.; Kummer, T. T.
10.1101/704916 — neuroscience — Posted on 2019-07-16
1757 Climate change lowers diversity and functional potential of microbes in Canada’s high Arctic
Colby, G. A.; Ruuskanen, M.; St. Pierre, K.; St.Louis, V.; Poulain, A.; Aris-Brosou, S.
10.1101/705178 — microbiology — Posted on 2019-07-16
1758 Compartment-dependent chromatin interaction dynamics revealed by liquid chromatin Hi-C
Belaghzal, H.; Borrman, T.; Stephens, A. D.; Lafontaine, D. L.; Venev, S. V.; Marko, J. F.; Weng, Z.; Dekker, J.
10.1101/704957 — genomics — Posted on 2019-07-16
1762 Pro-inflammatory cytokines disrupt β-cell circadian clocks in diabetes
Javeed, N.; Brown, M. R.; Rakshit, K.; Her, T.; Ye, Z.; Lee, J. H.; Ordog, T.; Matveyenko, A. V.
10.1101/705210 — cell biology — Posted on 2019-07-16
1763 Gene networks with transcriptional bursting recapitulate rare transient coordinated expression states in cancer
Schuh, L.; Saint-Antoine, M.; Sanford, E.; Emert, B.; Singh, A.; Marr, C.; Goyal, Y.; Raj, A.
10.1101/704247 — systems biology — Posted on 2019-07-16
1765 Modeling the relative role of human mobility, land-use and climate factors on dengue outbreak emergence in Sri Lanka
Zhang, Y.; Riera, J.; Ostrow, K.; Siddiqui, S.; de Silva, H.; Sarkar, S.; Fernando, L.; Gardner, L.
10.1101/462150 — epidemiology — Posted on 2019-07-16
1766 CD8+ T-cell-mediated immunoediting influences genomic evolution and immune evasion in murine gliomas
Kane, J. R.; Zhao, J.; Tsujiuchi, T.; Laffleur, B.; Mahajan, A.; Rao, G.; Mela, A.; Dmello, C.; Arrieta, V. A.; Chen, L.; Zhang, D. Y.; Gonzalez-Buendia, E.; Lee-Chang, C.; Xiao, T.; Rothschild, G.; Basu, U.; Horbinski, C.; Lesniak, M. S.; Heimberger, A. B.; Rabadan, R.; Canoll, P. D.; Sonabend, A. M.
10.1101/705152 — cancer biology — Posted on 2019-07-16
1767 Cell type specific control of basolateral amygdala plasticity via entorhinal cortex-driven feedforward inhibition
Guthman, E. M.; Garcia, J. D.; Ma, M.; Chu, P.; Baca, S. M.; Smith, K. R.; Restrepo, D.; Huntsman, M. M.
10.1101/348524 — neuroscience — Posted on 2019-07-16
1769 Structures of the ATP-fueled ClpXP proteolytic machine bound to protein substrate
Fei, X.; Bell, T. A.; Jenni, S.; Stinson, B. M.; Baker, T. A.; Harrison, S. C.; Sauer, R. T.
10.1101/704999 — biophysics — Posted on 2019-07-16
1770 Multiple acyl-CoA thioesterases occupy distinct functional niches within the mitochondrial matrix
Bekeova, C.; Anderson-Pullinger, L.; Boye, K.; Boos, F.; Sharpadskaya, Y.; Herrmann, J. M.; Seifert, E. L.
10.1101/705327 — biochemistry — Posted on 2019-07-16
1773 Integration of transcriptome, proteome and phosphoproteome data elucidates the genetic control of molecular networks
Grossbach, J.; Gillet, L.; Clement-Ziza, M.; Schmalohr, C. L.; Schubert, O. T.; Barnes, C. A.; Bludau, I.; Aebersold, R.; Beyer, A.
10.1101/703140 — systems biology — Posted on 2019-07-16
1776 Single-cell sequencing reveals a clonal expansion of pro-inflammatory synovial CD8 T cells expressing tissue homing receptors in psoriatic arthritis
Penkava, F.; Del Castillo Velasco-Herrera, M.; Young, M. D.; Yager, N.; Lledo Lara, A.; Guzzo, C.; Maroof, A.; Mamanova, L.; Cole, S.; Efremova, M.; Simone, D.; Brown, C. C.; Croxford, A. L.; Teichmann, S.; Bowness, P.; Behjati, S.; Al-Mossawi, M. H.
10.1101/704494 — immunology — Posted on 2019-07-16
1781 Coupling Day Length Data and Genomic Prediction tools for Predicting Time-Related Traits under Complex Scenarios
Jarquin, D.; Kajiya-Kanegae, H.; Taishen, C.; Yabe, S.; Persa, R.; Yu, J.; Nakagawa, H.; Yamazaki, M.; Iwata, H.
10.1101/703488 — genomics — Posted on 2019-07-16
1783 An integrated computational and experimental study to elucidate Staphylococcus aureus metabolism
Islam, M. M.; Thomas, V. C.; Van Beek, M.; Ahn, J.-S.; Alqarzaee, A. A.; Zhou, C.; Fey, P. D.; Bayles, K. W.; Saha, R.
10.1101/703884 — systems biology — Posted on 2019-07-16
1784 Comparison of CPU and GPU Bayesian Estimates of Fibre Orientations from Diffusion MRI
Kim, D. H. C.; Williams, L. J.; Hernandez-Fernandez, M.; Bjornson, B. H.
10.1101/703835 — neuroscience — Posted on 2019-07-16
1785 Target Capture Sequencing Unravels Rubus Evolution
Hummer, K. E.; Carter, K. A.; Liston, A.; Bassil, N. V.; Bryant, D.; Alice, L.; Bushakra, J.; Sutherland, B.; Mockler, T.
10.1101/703926 — evolutionary biology — Posted on 2019-07-16
1790 Highly efficient transgenesis with miniMos in Caenorhabditis briggsae
Zhao, Z.; Ding, Q.; Ren, X.; Li, R.; Chan, L.-y.; Ho, V. W.; Bi, Y.; Xie, D.
10.1101/704569 — genetics — Posted on 2019-07-16
1792 ASCL1-regulated DARPP-32 and t-DARPP stimulate small cell lung cancer growth and neuroendocrine tumor cell survival
Alam, S. K.; Wang, L.; Ren, Y.; Hernandez, C. E.; Kosari, F.; Roden, A. C.; Yang, R.; Hoeppner, L. H.
10.1101/703975 — cancer biology — Posted on 2019-07-16
1793 XPRESSyourself: Enhancing and Automating the Ribosome Profiling and RNA-Seq Analysis Toolkit
Berg, J. A.; Belyeu, J. R.; Morgan, J. T.; Bott, A. J.; Ouyang, Y.; Quinlan, A. R.; Gertz, J.; Rutter, J.
10.1101/704320 — bioinformatics — Posted on 2019-07-16
1794 Baicalein suppresses Tau fibrillization by sequestering oligomers
Sonawane, S.; Balmik, A.; Boral, D.; Ramasamy, S.; Chinnathambi, S.
10.1101/704536 — biochemistry — Posted on 2019-07-16
1798 A genetic screen for genes that impact peroxisomes in Drosophila identifies candidate genes for human disease
Wangler, M.; Yamamoto, S.; Graves, H. K.; Jangam, S.; Pignata, A.; Seto, E. S.; Tan, K. L.
10.1101/704122 — genetics — Posted on 2019-07-16
1802 Late Embryogenesis Abundant (LEA) proteins confer water stress tolerance to mammalian somatic cells
Czernik, M.; Fidanza, A.; Luongo, F. P.; Valbonetti, L.; Scapolo, P. A.; Patrizio, P.; Loi, P.
10.1101/704809 — cell biology — Posted on 2019-07-16
1804 The Ciliary Lumen Accommodates Passive Diffusion and Vesicle Trafficking in Cytoplasmic-Ciliary Transport
Ruba, A.; Luo, W.; Yu, J.; Takao, D.; Evangelou, A.; Higgins, R.; Khim, S.; Verhey, K. J.; Yang, W.
10.1101/704213 — biophysics — Posted on 2019-07-16
1807 Cellular metabolic reprogramming controls sugar appetite
Santos, Z.; Cardoso Figueiredo, R.; Elias, A. P.; Ribeiro, C.
10.1101/704783 — physiology — Posted on 2019-07-16
1808 Rhes, a Striatal-Enriched Protein, Promotes Mitophagy Via Nix.
Sharma, M.; Ramirez Jarquin, U. N.; Rivera, O.; Karantzis, M.; Eshraghi, M.; Shahani, N.; Sharma, V.; Tapia, R.; Subramaniam, S.
10.1101/703934 — neuroscience — Posted on 2019-07-16
1809 Triple visual hemifield maps in optic chiasm hypoplasia
Ahmadi, K.; Fracasso, A.; Puzniak, R. J.; Gouws, A. D.; Yakupov, R.; Speck, O.; Kaufmann, J.; Pestilli, F.; Dumoulin, S. O.; Morland, A. B.; Hoffmann, M. B.
10.1101/703520 — neuroscience — Posted on 2019-07-16
1810 Effects of long-term warming and enhanced nitrogen and sulfur deposition on microbial communities in a boreal peatland
Marti, M.; Eiler, A.; Buck, M.; Bertilsson, S.; Abu Al-Soud, W.; Sorensen, S.; Nilsson, M. B.; Svensson, B. H.
10.1101/704411 — microbiology — Posted on 2019-07-16
1811 Single-Cell RNA-Seq Reveals Novel Mitochondria-related Musculoskeletal Cell Populations during Adult Axolotl Limb Regeneration Process
Qin, T.; Fan, C.-m.; Wang, T.-z.; Yang, L.; Shen, W.-l.; Sun, H.; Lin, J.-x.; Cucchiarini, M.; D. Clement, N.; Mason, C. E.; Bunpetch, V.; Nakamura, N.; Bhonde, R.; Clement, N. D.; Yin, Z.; CHEN, X.
10.1101/704841 — genomics — Posted on 2019-07-16
1812 Mechanistic Insights into the Protective Roles of Polyphosphate Against Amyloid Cytotoxicity
Lempart, J.; Tse, E.; Lauer, J. A.; Ivanova, M. I.; Sutter, A.; Yoo, N.; Huettemann, P.; Southworth, D.; Jakob, U.
10.1101/704882 — cell biology — Posted on 2019-07-16
1813 Huntingtin fibrils with different toxicity, structure, and seeding potential can be reversibly interconverted
Isas, J. M.; Pandey, N. K.; Teranishi, K.; Okada, A. K.; Applebaum, A.; Meier, F.; Langen, R.; Siemer, A.
10.1101/703769 — biophysics — Posted on 2019-07-16
1814 Defining how oncogenic and developmental mutations of PIK3R1 alter the regulation of class IA phosphoinositide 3-kinases
Dornan, G. L.; Stariha, J. T.; Rathinawamy, M. K.; Powell, C. J.; Boulanger, M. J.; Burke, J. E.
10.1101/704106 — biochemistry — Posted on 2019-07-16
1816 A Common Architecture for Human and Artificial Cognition Explains Brain Activity Across Domains
Stocco, A.; Steine-Hanson, Z.; Koh, N.; Laird, J.; Lebiere, C.; Rosenbloom, P.
10.1101/703777 — neuroscience — Posted on 2019-07-16
1818 Connectivity Gradient in the Human Left Inferior Frontal Gyrus: Intraoperative Cortico-Cortical Evoked Potential Study
Nakae, T.; Matsumoto, R.; Kunieda, T.; Arakawa, Y.; Kobayashi, K.; Shimotake, A.; Yamao, Y.; Kikuchi, T.; Aso, T.; Matsuhashi, M.; Yoshida, K.; Ikeda, A.; Takahashi, R.; Lambon Ralph, M. A.; Miyamoto, S.
10.1101/702753 — neuroscience — Posted on 2019-07-16
1821 Polarella glacialis genomes encode tandem repeats of single-exon genes with functions critical to adaptation of dinoflagellates
Stephens, T. G.; Gonzalez-Pech, R. A.; Cheng, Y.; Mohamed, A. R.; Bhattacharya, D.; Ragan, M. A.; Chan, C. X.
10.1101/704437 — genomics — Posted on 2019-07-16
1822 Co-occurrence of kdr mutations V1016I and F1534C in pyrethroid-resistant Aedes aegypti (Diptera: Culicidae) populations from Costa Rica
Zardkoohi, A.; Castaneda, D.; Castillo, C.; Lol, J. C.; Lopez, F.; Marin Rodriguez, R.; Padilla, N.
10.1101/704767 — genetics — Posted on 2019-07-16
1826 N-cadherin stabilises neural identity by dampening anti-neural signals
Punovuori, K.; Migueles, R. P.; Malaguti, M.; Blin, G.; Macleod, K.; Carragher, N.; Pieters, T.; van Roy, F.; Stemmler, M.; Lowell, S.
10.1101/704817 — developmental biology — Posted on 2019-07-16
1829 Basic principles of the genetic code extension
Blazej, P.; Wnetrzak, M.; Mackiewicz, D.; Mackiewicz, P.
10.1101/704908 — bioinformatics — Posted on 2019-07-16
1831 High-throughput, three-dimensional isotropic imaging of whole mouse brain using multi-angle-resolved subvoxel SPIM
Nie, J.; Liu, S.; Yu, T.; Li, Y.; Ping, J.; Zhao, F.; Huang, Y.; Mei, W.; Zeng, S.; Zhu, D.; Fei, P.
10.1101/704387 — bioengineering — Posted on 2019-07-16
1832 A simple approach for accurate peptide quantification in MS-based proteomics
Mendes Maia, T. M.; Staes, A.; Plasman, K.; Pauwels, J.; Boucher, K.; Argentini, A.; Martens, L.; Montoye, T.; Gevaert, K.; Impens, F.
10.1101/703397 — biochemistry — Posted on 2019-07-16
1835 Inflammatory agents partially explain changes in cortical thickness and surface area related to body mass index in adolescence
Prats-Soteras, X.; Jurado, M. A.; Ottino-Gonzalez, J.; Garcia-Garcia, I.; Segura, B.; Caldu, X.; Sanchez-Garre, C.; Miro, N.; Tor, C.; Sender-Palacios, M. J.; Garolera, M.
10.1101/698696 — immunology — Posted on 2019-07-16
1837 Pericyte Bridges in Homeostasis and Hyperglycemia: Reconsidering Pericyte Dropout and Microvascular Structures
Corliss, B. A.; Ray, H. C.; Doty, R.; Mathews, C.; Sheybani, N.; Fitzgerald, K.; Prince, R.; Kelly-Goss, M.; Murfee, W. L.; Chappell, J.; Owens, G.; Yates, P. A.; Peirce, S. M.
10.1101/704007 — cell biology — Posted on 2019-07-16
1838 Imaging invasive fungal growth and inflammation in NADPH oxidase-deficient zebrafish
Huttenlocher, A.; Schoen, T. J.; Rosowski, E. E.; Knox, B. P.; Bennin, D.; Keller, N. P.
10.1101/703728 — cell biology — Posted on 2019-07-16
1839 Skin colonization by circulating neoplastic clones in cutaneous T-cell lymphoma
Iyer, A.; Hennessey, D.; O'Keefe, S.; Patterson, J.; Wang, W.; Ka-Shu Wong, G.; Gniadecki, R.
10.1101/703876 — cancer biology — Posted on 2019-07-16
1842 ChassiDex: A microbial database useful for synthetic biology applications
B P, K.; D, K.; Shinde, M.; Damaraju, N.; Muthukrishnan, A. B.; Prasad, S. B.; Jayaraman, G.
10.1101/703033 — synthetic biology — Posted on 2019-07-16
1843 Genomic re-assessment of the transposable element landscape of the potato genome
Zavallo, D.; Crescente, J. M.; Gantuz, M.; Leone, M.; Vanzetti, L.; Masuelli, R.; Asurmendi, S.
10.1101/701888 — plant biology — Posted on 2019-07-16
1844 Warm nights disrupt global transcriptional rhythms in field-grown rice panicles
Desai, J. S.; Lawas, L. M. F.; Valente, A. M.; Leman, A. R.; Grinevich, D. O.; Jagadish, S. K.; Doherty, C.
10.1101/702183 — plant biology — Posted on 2019-07-16
1845 DNA and RNA-SIP reveal Nitrospira spp. as key drivers of nitrification in groundwater-fed biofilters
Gulay, A.; Fowler, J.; Tatari, K.; Thamdrup, B.; Albrechtsen, H.-J.; Al-Soud, W. A.; Sorensen, S.; F. Smets, B.
10.1101/703868 — physiology — Posted on 2019-07-16
1848 Cell types of the human retina and its organoids at single-cell resolution: developmental convergence, transcriptomic identity, and disease map
Cowan, C. S.; Renner, M.; Gross-Scherf, B.; Goldblum, D.; Munz, M.; Krol, J.; Szikra, T.; Papasaikas, P.; Cuttat, R.; Waldt, A.; Diggelmann, R.; Patino-Alvarez, C. P.; Gerber-Hollbach, N.; Schuierer, S.; Hou, Y.; Srdanovic, A.; Balogh, M.; Panero, R.; Hasler, P. W.; Kusnyerik, A.; Szabo, A.; Stadler, M. B.; Orguel, S.; Hierlemann, A.; Scholl, H. P. N.; Roma, G.; Nigsch, F.; Roska, B.
10.1101/703348 — neuroscience — Posted on 2019-07-16
1849 Node-Specific Heritability in the Mouse Connectome
Wang, N.; Anderson, R. J.; Ashbrook, D. G.; Gopalakrishnan, V.; Park, Y.; Priebe, C. E.; Qi, Y.; Vogelstein, J. T.; Williams, R. W.; Johnson, G. A.
10.1101/701755 — neuroscience — Posted on 2019-07-16
1850 Striatal activity reflects cortical activity patterns
Peters, A. J.; Steinmetz, N. A.; Harris, K. D.; Carandini, M.
10.1101/703710 — neuroscience — Posted on 2019-07-16
1852 Decreased Directed Functional Connectivity in the Psychedelic State
Barnett, L.; Muthukumaraswamy, S. D.; Carhart-Harris, R. L.; Seth, A. K.
10.1101/703660 — neuroscience — Posted on 2019-07-16
1853 PGC-1α isoforms coordinate to balance hepatic metabolism and apoptosis in inflammatory environments
Leveille, M.; Besse-Patin, A.; Jouvet, N.; Jeromson, S.; Khan, N. P.; Sczelecki, S.; Baldwin, C.; Dumouchel, A.; Correia, J.; Jannig, P.; Petrillo, S.; Lazaris, A.; Boulais, J.; Metrakos, P.; Ruas, J. L.; Estall, J. L.
10.1101/703678 — molecular biology — Posted on 2019-07-16
1854 Gut microbiota structure differs between honey bees in winter and summer
Kesnerova, L.; Emery, O.; Troilo, M.; Erkosar, B.; Engel, P.
10.1101/703512 — microbiology — Posted on 2019-07-16
1858 HIPK4 is essential for murine spermiogenesis
Crapster, J. A.; Rack, P. G.; Hellmann, Z. J.; Elias, J. E.; Perrino, J. J.; Behr, B.; Li, Y.; Lin, J.; Zeng, H.; Chen, J. K.
10.1101/703637 — developmental biology — Posted on 2019-07-16
1859 Sphingomyelin suppresses Hedgehog signaling by restricting cholesterol accessibility at the ciliary membrane
Kinnebrew, M.; Iverson, E. J.; Patel, B.; Pusapati, G. V.; Kong, J. H.; Johnson, K. A.; Luchetti, G.; Covey, D.; Siebold, C.; Radhakrishnan, A.; Rohatgi, R.
10.1101/699819 — cell biology — Posted on 2019-07-16
1861 Relevance of genomic evaluation for egg quality traits in layers
Picard Druet, D.; Varenne, A.; Florian, H.; Herault, F.; Allais, S.; Burlot, T.; Le Roy, P.
10.1101/704742 — genomics — Posted on 2019-07-16
1862 The shared neoantigen landscape of MSI cancers reflects immunoediting during tumor evolution
Ballhausen, A.; Przybilla, M. J.; Jendrusch, M.; Haupt, S.; Pfaffendorf, E.; Draxlbauer, M.; Seidler, F.; Krausert, S.; Ahadova, A.; Kalteis, M. S.; Heid, D.; Gebert, J.; Bonsack, M.; Schott, S.; Bläker, H.; Seppälä, T.; Mecklin, J.-P.; Broeke, S. T.; Nielsen, M.; Heuveline, V.; Krzykalla, J.; Benner, A.; Riemer, A. B.; von Knebel Doeberitz, M.; Kloor, M.
10.1101/691469 — cancer biology — Posted on 2019-07-16
1863 DFEnitely different: Genome-wide characterization of differences in mutation fitness effects between populations
Fortier, A. L.; Coffman, A. J.; Struck, T. J.; Irby, M. N.; Burguette, J. E.; Ragsdale, A. P.; Gutenkunst, R.
10.1101/703918 — evolutionary biology — Posted on 2019-07-16
1864 Biodegradable harmonophores for targeted high-resolution in vivo tumor imaging
Sonay, A. Y.; Yaganoglu, S.; Konantz, M.; Teulon, C.; Sieber, S.; Jiang, S.; Behzadi, S.; Crespy, D.; Landfester, K.; Roke, S.; Langerke, C.; Pantazis, P.
10.1101/694760 — bioengineering — Posted on 2019-07-16
1866 Whole-chromosome hitchhiking driven by a male-killing endosymbiont
Martin, S. H.; Singh, K. S.; Gordon, I. J.; Omufwoko, K. S.; Collins, S.; Warren, I. A.; Munby, H.; Brattström, O.; Traut, W.; Martins, D. J.; Smith, D. A. S.; Jiggins, C. D.; Bass, C.; ffrench-Constant, R. H.
10.1101/703421 — evolutionary biology — Posted on 2019-07-16
1870 Cytoplasmic protein granules organize kinase-mediated RAS signaling
Tulpule, A.; Guan, J.; Neel, D. S.; Lin, Y. P.; Heslin, A.; Allegakoan, H.; Perati, S.; Ramirez, A. D.; Shi, X.; Yang, B.; Feng, S.; Huang, B.; Bivona, T. G.
10.1101/704312 — cancer biology — Posted on 2019-07-16
1871 Synaptotagmin-7 endows a population of chromaffin cell vesicles with enhanced calcium sensing and delayed content release properties
Bendahmane, M.; Kreutzberger, A. J. B.; Chapman-Morales, A.; Philippe, J. M.; Schenk, N.; Zhang, S.; Kiessling, V.; Tamm, L. K.; Giovannucci, D. R.; Jenkins, P. M.; Anantharam, A.
10.1101/704205 — biophysics — Posted on 2019-07-16
1874 A Kinesin-3 Recruitment Complex Facilitates Axonal Sorting of Enveloped Alpha Herpesvirus Capsids
Scherer, J.; Hogue, I. B.; Yaffe, Z. A.; Tanneti, N. S.; Winer, B. Y.; Vershinin, M.; Enquist, L. W.
10.1101/704718 — microbiology — Posted on 2019-07-16
1875 Genome-wide DNA methylation and gene expression patterns reflect genetic ancestry and environmental differences across the Indonesian archipelago
Natri, H. M.; Bobowik, K. S.; Kusuma, P.; Darusallam, C. C.; Jacobs, G. S.; Hudjashov, G.; Lansing, J. S.; Sudoyo, H.; Banovich, N. E.; Cox, M.; Gallego Romero, I.
10.1101/704304 — genomics — Posted on 2019-07-16
1880 The observation of birds as informative tools to develop citizen science: Contributions of a 10-year record in the state of Chihuahua, Mexico
Gonzalez-Quinones, F.; Granados, L. R.; Jurado Ruiz, J. M.; Tarango, J.; Machin-Mastromatteo, J. D.; Romo-Gonzalez, J. R.
10.1101/704676 — ecology — Posted on 2019-07-16
1881 Non-Redundant Roles in Sister Chromatid Cohesion of the DNA Helicase DDX11 and the SMC3 Acetyl Transferases ESCO1/2
Faramarz, A.; Balk, J. A.; Oostra, A. B.; Ghandour, C. A.; Wolthuis, R. M. F.; Rooimans, M. A.; de Lange, J.
10.1101/704635 — cell biology — Posted on 2019-07-16
1882 Identification, characterization, and application of a highly sensitive lactam biosensor from Pseudomonas putida
Thompson, M. G.; Pearson, A. N.; Barajas, J. F.; Cruz-Morales, P.; Sedaghatian, N.; Costello, Z.; Garber, M. E.; Incha, M. R.; Valencia, L. E.; Baidoo, E.; Martin, H. G.; Mukhopadhyay, A.; Keasling, J. D.
10.1101/700484 — synthetic biology — Posted on 2019-07-16
1886 Proteome-wide inference of protein kinase regulatory circuits
Invergo, B. M.; Petursson, B.; Bradley, D.; Giudice, G.; Petsalaki, E.; Beltrao, P.
10.1101/703157 — systems biology — Posted on 2019-07-16
1887 Consolidation of reward memory during sleep does not require dopaminergic activation
Alizadeh Asfestani, M.; Brechtmann, V.; Santiago, J. C. P.; Born, J.; Feld, G. .B.
10.1101/703132 — neuroscience — Posted on 2019-07-16
1888 Description of Klebsiella spallanzanii sp. nov. and of Klebsiella pasteurii sp. nov.
Merla, C.; Rodrigues, C.; Passet, V.; Corbella, M.; Thorpe, H. A.; Kallonen, T. V. S.; Zong, Z.; Marone, P.; Bandi, C.; Sassera, D.; Corander, J.; Feil, E. J.; Brisse, S.
10.1101/703363 — microbiology — Posted on 2019-07-16
1890 TMT-Opsins differentially modulate medaka brain function in a context-dependent fashion
Fontinha, B. M.; Zekoll, T.; Gallach, M.; Reithofer, F.; Barker, A. J.; Hofbauer, M.; Fischer, R.; von Haeseler, A.; Baier, H.; Tessmar-Raible, K.
10.1101/698480 — neuroscience — Posted on 2019-07-16
1892 Janggu: Deep Learning for Genomics
Kopp, W.; Monti, R.; Tamburrini, A.; Ohler, U.; Akalin, A.
10.1101/700450 — bioinformatics — Posted on 2019-07-16
1899 Denoising High-field Multi-dimensional MRI with Local Complex PCA
Bazin, P.-L.; Alkemade, A.; van der Zwaag, W.; Caan, M.; Mulder, M.; Forstmann, B. U.
10.1101/606582 — bioinformatics — Posted on 2019-07-16
1900 APEC: An accesson-based method for single-cell chromatin accessibility analysis
Li, B.; Li, Y.; Li, K.; Zhu, L.; Yu, Q.; Cai, P.; Fang, J.; Zhang, W.; Du, P.; Jiang, C.; Qu, K.
10.1101/646331 — bioinformatics — Posted on 2019-07-16
1913 Integrated Metabolomic and Transcriptomic Profiling Reveals Novel Activation-Induced Metabolic Networks in Human T cells
Hiemer, S. E.; Jatav, S.; Jussif, J.; Alley, J.; Lathwal, S.; Piotrowski, M. A.; Janiszewski, J.; Kibbey, R.; Alves, T.; Dumlao, D.; Jha, A. K.; Bandukwala, H.
10.1101/635789 — immunology — Posted on 2019-07-16
1916 Allosteric regulation of glycogen phosphorylase solution phase structural dynamics at high spatial resolution
Kish, M.; Smith, V.; Subramanian, S.; Vollmer, F.; Lethbridge, N.; Bond, N.; Cole, L.; Phillips, J. J.
10.1101/654665 — biophysics — Posted on 2019-07-16
1917 MaxQuant software for ion mobility enhanced shotgun proteomics
Prianichnikov, N.; Koch, H.; Koch, S.; Lubeck, M.; Heilig, R.; Brehmer, S.; Fischer, R.; Cox, J.
10.1101/651760 — bioinformatics — Posted on 2019-07-16
1918 CNApp: quantification of genomic copy number alterations in cancer and integrative analysis to unravel clinical implications
Franch-Exposito, S.; Bassaganyas, L.; Vila-Casadesus, M.; Hernandez-Illan, E.; Esteban-Fabro, R.; Diaz-Gay, M.; Lozano, J. J.; Castells, A.; Llovet, J. M.; Castellvi-Bel, S.; Camps, J.
10.1101/479667 — genomics — Posted on 2019-07-16
1919 C-type lectins CTL4 and CTLMA2: conserved heterodimeric structure and glycan specificity in Anopheles mosquitoes
Bishnoi, R.; Sousa, G. L.; Contet, A.; Day, C. J.; Hou, D. C.-F.; Profitt, L. A.; Singla, D.; Jennings, M. P.; Povelones, M.; Valentine, A. M.; Baxter, R. H. G.
10.1101/565705 — biochemistry — Posted on 2019-07-16
1920 An In-Silico Investigation of Menthol Metabolism
Limpanuparb, T.; Lorpaiboon, W.; Chinsukserm, K.
10.1101/618975 — biochemistry — Posted on 2019-07-16
1923 Transcriptome profiling of mouse samples using nanopore sequencing of cDNA and RNA molecules
Sessegolo, C.; Cruaud, C.; Da Silva, C.; Cologne, A.; Dubarry, M.; Derrien, T.; Lacroix, V.; Aury, J.-M.
10.1101/575142 — bioinformatics — Posted on 2019-07-16
1925 Spatiotemporal microhabitat heterogeneity and dispersion patterns of two small mammals in a temperate forest
De-la-Cruz, I. M.; Castro-Campillo, A.; Zavala-Hurtado, A.; Salame-Mendez, A.; Ramirez-Pulido, J.
10.1101/278390 — ecology — Posted on 2019-07-15
1926 Unique transcriptomic landscapes identified in idiopathic spontaneous and infection related preterm births compared to normal term births
Brockway, H. M.; Kallapur, S. G.; Buhimschi, I. A.; Buhimschi, C. S.; Ackerman, W. E.; Muglia, L. J.; Jones, H. N.
10.1101/386185 — developmental biology — Posted on 2019-07-15
1927 A General Framework for Variable Selection in Linear Mixed Models with Applications to Genetic Studies with Structured Populations
Bhatnagar, S. R.; Oualkacha, K.; Yang, Y.; Lu, T.; Forest, M.; Loredo-Osti, J.; Schurr, E.; Greenwood, C. M.
10.1101/408484 — bioinformatics — Posted on 2019-07-15
1930 Gas seepage pockmark microbiomes suggest the presence of sedimentary coal seams in the Oxarfjordur graben of NE-Iceland
Thorsteinsdottir, G. V.; Blischke, A.; Sigurbjornsdottir, A.; Oskarsson, F.; Arnarson, T. S.; Magnusson, K. P.; Vilhelmsson, O.
10.1101/348011 — microbiology — Posted on 2019-07-15
1932 Plasticity in striatal dopamine release is governed by release-independent depression and the dopamine transporter
Condon, M.; Platt, N.; Zhang, Y.-F.; Roberts, B.; Tseu, M.-Y.; Vietti-Michelina, S.; Threlfell, S.; Mann, E. O.; Cragg, S. J.
10.1101/392753 — neuroscience — Posted on 2019-07-15
1933 Using Deep Learning to Annotate the Protein Universe
Bileschi, M. L.; Belanger, D.; Bryant, D. H.; Sanderson, T.; Carter, B.; Sculley, D.; DePristo, M. A.; Colwell, L. J.
10.1101/626507 — bioinformatics — Posted on 2019-07-15
1934 Collaborative Cross Mouse Populations as a Resource for the Study of Epilepsy
Gu, B.; Shorter, J. R.; Williams, L. H.; Bell, T. A.; Hock, P.; Dalton, K. A.; PAN, Y.; Miller, D. R.; Shaw, G. D.; Cooley, B. C.; Philpot, B. D.; Pardo Manuel de Villena, F.
10.1101/690917 — neuroscience — Posted on 2019-07-15
1935 Egocentric boundary vector tuning of the retrosplenial cortex
Alexander, A.; Carstensen, L.; Hinman, J.; Raudies, F.; Chapman, G. W.; Hasselmo, M.
10.1101/702712 — neuroscience — Posted on 2019-07-15
1937 Adult-born hippocampal neurons undergo extended development and are morphologically distinct from neonatally-born neurons
Cole, J. D.; Espinueva, D.; Seib, D. R.; Cooke, M. B.; Cahill, S. P.; O'Leary, T.; Kwan, S. S.; Snyder, J. S.
10.1101/702746 — neuroscience — Posted on 2019-07-15
1938 Quantitative real-time PCR assay for the rapid identification of the multidrug-resistant bacterial pathogen Stenotrophomonas maltophilia
Fraser, T. A.; Bell, M. G.; Harris, P. N. A.; Bell, S. C.; Bergh, H.; Nguyen, T.-K.; Kidd, T. J.; Nimmo, G. R.; Sarovich, D. S.; Price, E. P.
10.1101/702985 — microbiology — Posted on 2019-07-15
1943 FINE GRAINED LONGITUDINAL ANALYSIS OF COCOA BEAN FERMENTATION PROVIDES INSIGHTS INTO THE DYNAMICS OF MICROBIAL POPULATIONS
Pacheco-Montealegre, M. E.; Davila-Mora, L. L.; Botero-Rute, L. M.; Reyes, A.; Caro-Quintero, A.
10.1101/702225 — microbiology — Posted on 2019-07-15
1945 Genetic rescue without genomic swamping in wild populations
Fitzpatrick, S. W.; Bradburd, G.; Kremer, C.; Salerno, P.; Angeloni, L.; Funk, W. C.
10.1101/701706 — evolutionary biology — Posted on 2019-07-15
1946 Defining the emergence of myeloid-derived suppressor cells in breast cancer using single-cell transcriptomics
Alshetaiwi, H.; Pervolarakis, N.; McIntyre, L. L.; Ma, D.; Nguyen, Q.; Rath, J. A.; Nee, K.; Hernandez, G.; Evans, K.; Torosian, L.; Silva, A.; Walsh, C.; Kessenbrock, K.
10.1101/702860 — cancer biology — Posted on 2019-07-15
1947 Minor QTLs mining through the combination of GWAS and machine learning feature selection
Zhou, W.; Bellis, E. S.; Stubblefield, J.; Causey, J.; Qualls, J.; Walker, K.; Huang, X.
10.1101/702761 — bioinformatics — Posted on 2019-07-15
1950 A custom genotyping array reveals population-level heterogeneity for the genetic risks of prostate cancer and other cancers in Africa
Harlemon, M.; Ajayi, O.; Kachambwa, P.; Kim, M. S.; Simonti, C. N.; Quiver, M. H.; Petersen, D. C.; Mittal, A.; Fernandez, P.; Hsing, A. W.; Baichoo, S.; Agalliu, I.; Jalloh, M.; Gueye, S. M.; Snyper, N. Y.; Adusei, B.; Mensah, J. E.; Abrahams, A. O. D.; Adebiyi, A. O.; Orunmuyi, A.; Aisuodionoe-Shadrach, O. I.; Nwegbu, M. M.; Joffe, M.; Chen, W. C.; Irusen, H.; Neugut, A. I.; Quintana, Y.; Seutloali, M.; Fadipe, M.; Warren, C.; Woehrmann, M. H.; Zhang, P.; Ongaco, C.; Mawhinney, M.; McBride, J.; Andrews, C.; Adams, M.; Pugh, E.; Rebbeck, T. R.; Petersen, L.; Lachance, J.
10.1101/702910 — genomics — Posted on 2019-07-15
1954 VariantSpark, A Random Forest Machine Learning Implementation for Ultra High Dimensional Data
Bayat, A.; Szul, P.; O'Brien, A.; Dunne, R.; Luo, O.; Jain, Y.; Hosking, B.; Bauer, D.
10.1101/702902 — bioinformatics — Posted on 2019-07-15
1955 Towards a bottom-up understanding of antimicrobial use and resistance on the farm: A knowledge, attitudes, and practices survey across livestock systems in five African countries
Caudell, M.; Dorado-Garcia, A.; Eckford, S.; Byarugaba, D.; Afakye, K.; Chansa-Kabali, T.; Kabali, E.; Kiambi, S.; Kimani, T.; Mainda, G.; Mangesho, P.; Chimpangu, F.; Dube, K.; Kikimoto, B. B.; Koka, E.; Mugara, T.; Swiswa, S.
10.1101/703298 — scientific communication and education — Posted on 2019-07-15
1958 Priors and Payoffs in Confidence Judgments
Locke, S. M.; Gaffin-Cahn, E.; Hosseinizaveh, N.; Mamassian, P.; Landy, M. S.
10.1101/703082 — neuroscience — Posted on 2019-07-15
1960 GenEPi: Piezo1-based fluorescent reporter for visualizing mechanical stimuli with high spatiotemporal resolution
Yaganoglu, S.; Helassa, N.; Gaub, B. M.; Welling, M.; Shi, J.; Müller, D. J.; Török, K.; Pantazis, P.
10.1101/702423 — cell biology — Posted on 2019-07-15
1966 Malassezia interaction with a reconstructed human epidermis: imaging studies
Pedrosa, A. F.; Lisboa, C.; Branco, J.; Almeida, A. C.; Mendes, C.; Pellevoisin, C.; Leite-Moreira, A.; Miranda, I. M.; Rodrigues, A. G.
10.1101/700781 — microbiology — Posted on 2019-07-15
1967 The TIR-domain containing effectors BtpA and BtpB from Brucella abortus block energy metabolism
Coronas-Serna, J. M.; Louche, A.; Rodriguez-Escudero, M.; Roussin, M.; Imbert, P. R.; Rodriguez-Escudero, I.; Molina, M.; Gorvel, J.-P.; Cid, V. J.; Salcedo, S. P.
10.1101/703330 — microbiology — Posted on 2019-07-15
1968 Trace amine-associated receptor gene polymorphism increases drug craving
Loftis, J. M.; Lasarev, M.; Shi, X.; Lapidus, J.; Janowsky, A.; Hoffman, W.; Huckans, M.
10.1101/703256 — neuroscience — Posted on 2019-07-15
1969 Cross-species Functional Alignment Reveals Evolutionary Hierarchy Within the Connectome
Xu, T.; Nenning, K.-H.; Schwartz, E.; Hong, S.-J.; Vogelstein, J. T.; Fair, D. A.; Schroeder, C. E.; Margulies, D. S.; Smallwood, J.; Milham, M. P.; Langs, G.
10.1101/692616 — neuroscience — Posted on 2019-07-15
1972 An atlas of infiltrated B-lymphocytes in breast cancer revealed by paired single-cell RNA-sequencing and antigen receptor profiling
hu, q.; hong, y.; qi, p.; lu, g.; mai, x.; xu, s.; he, x.; guo, y.; gao, l.; jing, z.; wang, j.; cai, t.; zhang, y.
10.1101/695601 — immunology — Posted on 2019-07-15
1973 Trisk95 as Novel Skin Mirror for Normal and Diabetic Systemic Glucose Level
Ali, N.; Reza-Rezvani, H.; Motei, D.; Suleman, S.; Mahfouf, W.; Marty, I.; Ronkainen, V.-P.; Vainio, S.
10.1101/688887 — cell biology — Posted on 2019-07-15
1975 Reporting animal research: Explanation and Elaboration for the ARRIVE guidelines 2019
Percie du Sert, N.; Ahluwalia, A.; Alam, S.; Avey, M. T.; Baker, M.; Browne, W.; Clark, A.; Cuthill, I. C.; Dirnagl, U.; Emerson, M.; Garner, P.; Holgate, S. T.; Howells, D. W.; Hurst, V.; Karp, N. A.; Lidster, K.; MacCallum, C. J.; Macleod, M.; Pearl, E. J.; Petersen, O.; Rawle, F.; Reynolds, P.; Rooney, K.; Sena, E. S.; Silberberg, S. D.; Steckler, T.; Würbel, H.
10.1101/703355 — scientific communication and education — Posted on 2019-07-15
1981 Cloning human dental pulp cells and studying inter-clone diversity
Guo, L.; Zou, Z.; Yan, M.; Freytag, M.; Friedrich, R. E.; Kluwe, L.
10.1101/703280 — cell biology — Posted on 2019-07-15
1982 Growth defects and loss-of-function in synthetic gene circuits
Nikolados, E.-M.; Weisse, A. Y.; Ceroni, F.; Oyarzun, D. A.
10.1101/623421 — synthetic biology — Posted on 2019-07-15
1983 The ARRIVE guidelines 2019: updated guidelines for reporting animal research
Percie du Sert, N.; Hurst, V.; Ahluwalia, A.; Alam, S.; Avey, M. T.; Baker, M.; Browne, W. J.; Clark, A.; Cuthill, I. C.; Dirnagl, U.; Emerson, M.; Garner, P.; Holgate, S. T.; Howells, D. W.; Karp, N. A.; Lidster, K.; MacCallum, C. J.; Macleod, M.; Petersen, O.; Rawle, F.; Reynolds, P.; Rooney, K.; Sena, E. S.; Silberberg, S. D.; Steckler, T.; Würbel, H.
10.1101/703181 — scientific communication and education — Posted on 2019-07-15
1984 Drug related and psychopathological symptoms in HIV-positive men who have sex with men who inject drugs during sex (Slamsex): Data from the U-SEX GESIDA 9416 Study.
Dolengevich-Segal, H.; Gonzalez-Baeza, A.; Valencia, J.; Valencia-Ortega, E.; Cabello, A.; Tellez-Molina, M. J.; Perez-Elias, M. J.; Serrano, R.; Perez-Latorre, L.; Martin-Carbonero, L.; Arponen, S.; Sanz-Moreno, J.; De la Fuente, S.; Bisbal, O.; Santos, I.; Casado, J. L.; Troya, J.; Cervero-Jimenez, M.; Nistal, S.; Cuevas, G.; Correas-Lauffer, J.; Torrens, M.; Ryan, P.; The USEX-Gesida Group,
10.1101/703272 — scientific communication and education — Posted on 2019-07-15
1986 Gestational pertussis vaccination and the infants cellular immune response against whole-cell pertussis vaccine in the first year of life
Argondizo Correia, C.; Rehder de Andrade Vaz-de-Lima, L.; Uchima Uehara, E.; Gatti Fernandes, E.; Keico Sato, H.; Sayuri Sato, A. P.; Jose de Albuquerque Luna, E.; Ayres de Castilho, E.; Alves de Brito, C.
10.1101/697722 — immunology — Posted on 2019-07-15
1989 Multiple modes of convergent adaptation in the spread of glyphosate-resistant Amaranthus tuberculatus
Kreiner, J. M.; Giacomini, D.; Bemm, F.; Waithaka, B.; Regalado, J.; Lanz, C.; Hildebrandt, J.; Sikkema, P. H.; Tranel, P. J.; Weigel, D.; Stinchcombe, J. R.; Wright, S. I.
10.1101/498519 — evolutionary biology — Posted on 2019-07-15
1990 Integrative proteomic and phosphoproteomic profiling of prostate cell lines
Katsogiannou, M.; Boyer, J. B.; Valdeolivas, A.; Remy, E.; Calzone, L.; Audebert, S.; Rocchi, P.; Camoin, L.; Baudot, A.
10.1101/696450 — bioinformatics — Posted on 2019-07-15
1993 Environmental DNA (eDNA) metabarcoding of pond water as a tool to survey conservation and management priority mammals
Harper, L. R.; Lawson Handley, L.; Carpenter, A. I.; Ghazali, M.; Di Muri, C.; Macgregor, C. J.; Logan, T. W.; Law, A.; Breithaupt, T.; Read, D. S.; McDevitt, A.; Hänfling, B.
10.1101/546218 — molecular biology — Posted on 2019-07-15
1994 Genomics, evolutionary history and diagnostics of the Alternaria alternata species group including apple and Asian pear pathotypes
Armitage, A. D.; Cockerton, H. M.; Sreenivasaprasad, S.; Woodhall, J.; Lane, C.; Harrison, R. J.; Clarkson, J. P.
10.1101/534685 — microbiology — Posted on 2019-07-15
1998 Kinetics and identities of extracellular peptidases in subsurface sediments of the White Oak River Estuary, NC
Steen, A. D.; Kevorkian, R. T.; Bird, J. T.; Dombrowski, N.; Baker, B. J.; Hagen, S. M.; Mulligan, K. H.; Schmidt, J. M.; Webber, A. T.; Royalty, T. M.; Alperin, M. J.
10.1101/080671 — ecology — Posted on 2019-07-15
1999 SINATRA: A Sub-Image Analysis Pipeline for Selecting Features that Differentiate Classes of 3D Shapes
Wang, B.; Sudijono, T.; Kirveslahti, H.; Gao, T.; Boyer, D. M.; Mukherjee, S.; Crawford, L.
10.1101/701391 — bioinformatics — Posted on 2019-07-14
2000 Too much, too young? Altered corticolimbic axonal innervation and resting state functional connectivity suggests sex-dependent outcomes in a rat model of early life adversity
Honeycutt, J. A.; Demaestri, C.; Peterzell, S.; Silveri, M. M.; Cai, X.; Kulkarni, P.; Cunningham, M. G.; Ferris, C. F.; Brenhouse, H. C.
10.1101/700666 — neuroscience — Posted on 2019-07-14
2003 Hemibiotrophic fungal pathogen induces systemic susceptibility and systemic shifts in wheat metabolome and microbiome composition
Seybold, H.; Demetrowitsch, T.; Hassani, M. A.; Szymczak, S.; Reim, E.; Haueisen, J.; Ruehlemann, M.; Franke, A.; Schwarz, K.; Stukenbrock, E. H.
10.1101/702373 — plant biology — Posted on 2019-07-14
2007 Multiple timescales account for adaptive responses across sensory cortices
Latimer, K.; Barbera, D.; Sokoletsky, M.; Awwad, B.; Katz, Y.; Nelken, I.; Lampl, I.; Fairhall, A.; Priebe, N. J.
10.1101/700062 — neuroscience — Posted on 2019-07-14
2008 Tyrosyl-DNA phosphodiesterase 1 and topoisomerase I activities as predictive indicators for Glioblastoma susceptibility to genotoxic agents
Wang, W.; Rodriguez-Silva, M.; Acanda de la Rocha, A. M.; Wolf, A. L.; Lai, Y.; Liu, Y.; Reinhold, W. C.; Pommier, Y.; Chambers, J. W.; Tse-Dinh, Y.-C.
10.1101/700039 — cancer biology — Posted on 2019-07-14
2009 Viral rebound kinetics following single and combination immunotherapy for HIV/SIV
Prague, M.; Gerold, J. M.; Balelli, I.; Pasin, C.; Li, J. Z.; Barouch, D. H.; Whitney, J. B.; Hill, A. L.
10.1101/700401 — systems biology — Posted on 2019-07-14
2010 Maternal antioxidant treatment prevents behavioural and neural changes in offspring exposed to prenatal social stress
Scott, H.; Phillips, T. J.; Sze, Y.; Alfieri, A.; Rogers, M. F.; Case, C. P.; Brunton, P. J.
10.1101/701292 — neuroscience — Posted on 2019-07-14
2012 Rectus femoris hyperreflexia predicts knee flexion angle in post-stroke Stiff-Knee gait
Akbas, T.; Kim, K.; Doyle, K.; Manella, K.; Lee, R. K.; Spicer, P.; Knikou, M.; Sulzer, J.
10.1101/699108 — bioengineering — Posted on 2019-07-14
2015 Synechocystis KaiC3 displays temperature and KaiB dependent ATPase activity and is important for viability in darkness
Wiegard, A.; Kobler, C.; Oyama, K.; Dorrich, A. K.; Azai, C.; Terauchi, K.; Wilde, A.; Axmann, I. M. M.
10.1101/700500 — microbiology — Posted on 2019-07-14
2016 Functional Annotation of Human Long Non-Coding RNAs via Molecular Phenotyping
Ramilowski, J. A.; Yip, C. W.; Agrawal, S.; Chang, J.-C.; Ciani, Y.; Kulakovskiy, I. V.; Mendez, M.; Ooi, J. L. C.; Petri, A.; Roos, L.; Severin, J.; Yasuzawa, K.; Ouyang, J. F.; Parkinson, N.; Abugessaisa, I.; Akalin, A.; Antonov, I.; Arner, E.; Bonetti, A.; Bono, H.; Borsari, B.; Brombacher, F.; Cannistraci, C.; Cardenas, R.; Cardon, M.; Chang, H.; Dostie, J.; Ducoli, L.; Favorov, A.; Fort, A.; Garrido, D.; Gil, N.; Gimenez, J.; Guler, R.; Handoko, L.; Harshbarger, J.; Hasegawa, A.; Hasegawa, Y.; Hashimoto, K.; Hayatsu, N.; Heutink, P.; Hirose, T.; Imada, E. L.; Itoh, M.; Kaczkowski, B.; Kan
10.1101/700864 — genomics — Posted on 2019-07-14
2018 Functional connectivity predicts changes in attention over minutes, days, and months
Rosenberg, M. D.; Scheinost, D.; Greene, A. S.; Avery, E. W.; Kwon, Y. H.; Finn, E. S.; Ramani, R.; Qiu, M.; Constable, R. T.; Chun, M. M.
10.1101/700476 — neuroscience — Posted on 2019-07-14
2019 Performance assessment of total RNA sequencing of human biofluids and extracellular vesicles
Everaert, C.; Helsmoortel, H.; Decock, A.; Hulstaert, E.; Van Paemel, R.; Verniers, K.; Nuytens, J.; Anckaert, J.; Nijs, N.; Tulkens, J.; Dhondt, B.; Hendrix, A.; Mestdagh, P.; Vandesompele, J.
10.1101/701524 — molecular biology — Posted on 2019-07-14
2020 Isothermal Digital Detection Of MicroRNA Using Background-Free Molecular Circuit
Gines, G.; Menezes, R.; Nara, K.; Kirstetter, A.-S.; Taly, V.; Rondelez, Y.
10.1101/701276 — molecular biology — Posted on 2019-07-14
2021 Biocontrol of PGPR strain Bacillus amyloliquefaciens Ba168 against Phytophthora nicotianae on tobacco
Guo, D.; Yuan, C.; Luo, Y.; Chen, Y.; Lu, M.; Chen, G.; Ren, G.; Cui, C.; Zhang, J.; An, D.
10.1101/700757 — microbiology — Posted on 2019-07-14
2022 Zika virus infection and temperature significantly impact Aedes albopictus gut microbiota
Onyango, M.; Bialosuknia, S.; Payne, A.; Mathias, N.; Kuo, L.; Ciota, A.; Kramer, L.
10.1101/702464 — microbiology — Posted on 2019-07-14
2027 A reference library for the identification of Canadian invertebrates: 1.5 million DNA barcodes, voucher specimens, and genomic samples
deWaard, J. R.; Ratnasingham, S.; Zakharov, E. V.; Borisenko, A. V.; Steinke, D.; Telfer, A. C.; Perez, K. H. J.; Sones, J. E.; Young, M. R.; Levesque-Beaudin, V.; Sobel, C. N.; Abrahamyan, A.; Bessonov, K.; Blagoev, G.; deWaard, S. L.; Ho, C.; Ivanova, N. V.; Layton, K. K. S.; Lu, L.; Manjunath, R.; McKeown, J. T. A.; Milton, M. A.; Miskie, R.; Monkhouse, N.; Naik, S.; Nikolova, N.; Pentinsaari, M.; Prosser, S. W. J.; Radulovici, A. E.; Steinke, C.; Warne, C. P.; Hebert, P. D. N.
10.1101/701805 — ecology — Posted on 2019-07-14
2028 DIscBIO: a user-friendly pipeline for biomarker discovery in single-cell transcriptomics
Ghannoum, S.; Ragan-Kelley, B.; Jonasson, E.; Stahlberg, A.; Kohn-Luque, A.
10.1101/700989 — bioinformatics — Posted on 2019-07-14
2029 RNA-Bloom provides lightweight reference-free transcriptome assembly for single cells
Nip, K. M.; Chiu, R.; Yang, C.; Chu, J.; Mohamadi, H.; Warren, R. L.; Birol, I.
10.1101/701607 — bioinformatics — Posted on 2019-07-14
2031 The Creative Mind: Blending Oxytocinergic, Dopaminergic and Personality
Chong, A.; Becker, B.; Cruz Angeles, D.; Gutierrez Matos, M.; Xue, X.; San Lai, P.; Cheung, M.; Lei, Z.; Malavasi, F.; Chew, S. H.; Ebstein, R. P.
10.1101/700807 — neuroscience — Posted on 2019-07-14
2033 LSM2-8 and XRN-2 contribute to the silencing of H3K27me3-marked genes through targeted RNA decay
MATTOUT, A.; Gaidatzis, D.; Padeken, J.; Schmid, C.; Aeschlimann, F.; Kalck, V.; Gasser, S. M.
10.1101/701581 — molecular biology — Posted on 2019-07-14
2039 Mechanistic Elucidation of the Antitumor Properties of a Novel Death Receptor 5 Activator
Wang, M.; Law, M.; Davis, B.; Yaaghubi, E.; Franceschini Ghilardi, A.; Ferreira, R.; Chiang, C.-W.; Guryanova, O.; Kopinke, D.; Heldermon, C.; Castellano, R.; Law, B.
10.1101/700906 — cancer biology — Posted on 2019-07-14
2040 Pivotal involvement of the CX3CL1-CX3CR1 axis for the recruitment of M2-TAMs in skin carcinogenesis
Ishida, Y.; Kuninaka, Y.; Yamamoto, Y.; Nosaka, M.; Kimura, A.; Furukawa, F.; Mukaida, N.; Kondo, T.
10.1101/700914 — cancer biology — Posted on 2019-07-14
2041 Characters of neoantigens in cancer immunotherapy
Bai, P.; Li, Y.; Zhou, Q.; Xia, J.; Wu, M.; Deng, H.; Kappler, J. W.; Marrack, P.; Zhou, Y.; Yin, L.
10.1101/700732 — cancer biology — Posted on 2019-07-14
2042 Taxonomically informed scoring enhances confidence in natural products annotation
Rutz, A.; Donoue-Kubo, M.; ollivier, s.; BISSON, J.; Bagheri, M.; Saesong, T.; Ebrahimi, S. N.; Ingkaninan, K.; Wolfender, J.-L.; Allard, P.-M.
10.1101/702308 — bioinformatics — Posted on 2019-07-14
2043 CASLFA: CRISPR/Cas9-mediated lateral flow nucleic acid assay
Wang, X.; Xiong, E.; Tian, T.; Cheng, M.; Lin, W.; Sun, J.; Zhou, X.
10.1101/702209 — bioengineering — Posted on 2019-07-14
2047 Exosome-mediated crosstalk stimulated by liver fluke granulin promotes a microenvironment conducive to cholangiocarcinoma
Arunsan, P.; Chaidee, A.; Cochan, C. J.; Mann, V. H.; Tanno, T.; kumkhaek, c.; Smout, M.; Karinshak, S.; Rodpai, R.; Sotillo, J.; Loukas, A.; LAHA, T.; Brindley, P. J.; Ittiprasert, W.
10.1101/700427 — molecular biology — Posted on 2019-07-14
2049 Rumen Bacteria and Serum Metabolites Predictive of Feed Efficiency Phenotypes in Beef Cattle
Clemmons, B. A.; Martino, C.; Powers, J. B.; Campagna, S.; Voy, B. H.; Donohoe, D. R.; Gaffney, J.; Embree, M. M.; Myer, P. R.
10.1101/701300 — microbiology — Posted on 2019-07-14
2050 Characterisation of cefotaxime-resistant urinary Escherichia coli from primary care in South-West England 2017-2018.
Findlay, J.; Gould, V. C.; North, P.; Bowker, K. E.; Williams, M.; MacGowan, A. P.; Avison, M. B.
10.1101/701383 — microbiology — Posted on 2019-07-14
2051 Extent and context dependence of pleiotropy revealed by high-throughput single-cell phenotyping
Geiler-Samerotte, K. A.; Li, S.; Lazaris, C.; Taylor, A.; Ziv, N.; Ramjeawan, C.; Paaby, A. B.; Siegal, M. L.
10.1101/700716 — evolutionary biology — Posted on 2019-07-14
2052 Multicellular tumor spheroids- an effective in vitro model for understanding drug resistance in head and neck cancer
Azharuddin, M.; Roberg, K.; Jain, M. V.; D' arcy, P.; Hinkula, J.; Dhara, A. K.; Slater, N. K. H.; Patra, H. K.
10.1101/702316 — cancer biology — Posted on 2019-07-14
2054 Extended RNA base pairing networks imprint small molecule binding preferences
G. Oliver, C.; Mallet, V.; Sarrazin Gendron, R.; Reinharz, V.; Moitessier, N.; Waldispuhl, J.
10.1101/701326 — bioinformatics — Posted on 2019-07-14
2055 Systematic assessment of commercially available low-input miRNA library preparation kits
Heinicke, F.; Zhong, X.; Zucknick, M.; Breidenbach, J.; Sundaram, A.; Flam, S. T.; Leithaug, M.; Dalland, M.; Farmer, A.; Henderson, J. M.; Hussong, M. A.; Moll, P.; Nguyen, L.; McNulty, A.; Shaffer, J. M.; Shore, S.; Yip, H. K.; Vitkovska, J.; Rayner, S.; Lie, B. A.; Gilfillan, G. D.
10.1101/702456 — bioinformatics — Posted on 2019-07-14
2056 CoralP: Flexible visualization of the human phosphatome
Min, A.; Deoudes, E.; Bond, M. L.; Davis, E.; Phanstiel, D.
10.1101/701508 — bioinformatics — Posted on 2019-07-14
2060 Processing of a single ribonucleotide embedded into DNA by human nucleotide excision repair and DNA polymerase η
Sassa, A.; Tada, H.; Takeishi, A.; Harada, K.; Suzuki, M.; Tsuda, M.; Sasanuma, H.; Takeda, S.; Sugasawa, K.; Yasui, M.; Honma, M.; Ura, K.
10.1101/699587 — genetics — Posted on 2019-07-14
2061 Loss of acid sphingomyelinase ameliorates disease progression in a vertebrate model of Glucocerebrosidase deficiency
Keatinge, M.; Gegg, M.; Watson, L.; Mortiboys, H.; Bui, H.; van Leens, A.; Lefeber, D.; MacDonald, R.; Schapira, A.; Bandmann, O.
10.1101/702340 — genetics — Posted on 2019-07-14
2062 Seed-dispersal networks lose complexity in tropical forest fragments
Emer, C.; Pizo, M. A.; Ribeiro, M. C.; da Silva, F. R.; Jordano, P.; Galetti, M.
10.1101/701730 — ecology — Posted on 2019-07-14
2065 Estradiol-inducible AvrRps4 expression reveals distinct properties of TIR-NLR-mediated effector-triggered immunity
Ngou, B. P. M.; Ahn, H.-K.; Ding, P.; Redkar, A.; Brown, H.; Ma, Y.; Youles, M.; Tomlinson, L.; Jones, J. D.
10.1101/701359 — plant biology — Posted on 2019-07-14
2066 Establishment of Proximity-dependent Biotinylation Approaches in Different Plant Model Systems
Arora, D.; B. Abel, N.; Liu, C.; Van Damme, P.; Dai Vu, L.; Tornkvist, A.; Impens, F.; Eeckhout, D.; Goossens, A.; De Jaeger, G.; Ott, T.; Moschou, P.; Van Damme, D.
10.1101/701425 — plant biology — Posted on 2019-07-14
2067 The MRL/MpJ Mouse Strain Is Not Protected From Muscle Atrophy And Weakness After Rotator Cuff Tear
Talarek, J. R.; Piacentini, A. N.; Konja, A. C.; Wada, S.; Swanson, J. B.; Nussenzweig, S. C.; Dines, J. S.; Rodeo, S. A.; Mendias, C. L.
10.1101/702167 — physiology — Posted on 2019-07-14
2068 Enhancing rigor and reproducibility in maternal immune activation models: practical considerations and predicting resilience and susceptibility using baseline immune responsiveness before pregnancy
Estes, M. L.; Farrelly, K.; Cameron, S.; Aboubechara, J. P.; Haapanen, L.; Schauer, J. D.; Horta, A.; Prendergast, K.; MacMahon, J. A.; Shaffer, C. I.; Le, C. T.; Kincheloe, G. N.; Tan, D. J.; van der List, D.; Bauman, M. D.; Carter, C. S.; Van de Water, J.; McAllister, A. K.
10.1101/699983 — neuroscience — Posted on 2019-07-14
2070 EEG spectral power, but not theta/beta ratio, is a neuromarker for adult ADHD
Kiiski, H.; Bennett, M.; Rueda-Delgado, L. M.; Farina, F.; Knight, R.; Boyle, R.; Roddy, D.; Grogan, K.; Bramham, J.; Kelly, C.; Whelan, R.
10.1101/700005 — neuroscience — Posted on 2019-07-14
2073 Increased temperatures reduce the vectorial capacity of Aedes mosquitoes for Zika virus
Onyango, m.; Bialosuknia, S.; Payne, A.; Mathias, N.; Kuo, L.; Vigneron, A.; DeGennaro, M.; Ciota, A.; kramer, l.
10.1101/702431 — microbiology — Posted on 2019-07-14
2074 Dinoflagellates with relic endosymbiont nuclei as novel models for elucidating organellogenesis
Sarai, C.; Tanifuji, G.; Nakayama, T.; Kamikawa, R.; Takahashi, K.; Miyashita, H.; Ishida, K.-i.; Iwataki, M.; Inagaki, Y.
10.1101/702274 — evolutionary biology — Posted on 2019-07-14
2075 Adult crowding induces sexual dimorphism in chronic stress-response in Drosophila melanogaster
Lall, S.; Mudunuri, A.; Santhosh, S.; Malwade, A.; Thadi, A.; K., G.; Dey, S.
10.1101/702357 — ecology — Posted on 2019-07-14
2076 Brain network dynamics correlates with personality traits
Kabbara, A.; Hassan, M.; Paban, V.; Modolo, J.; Weill, A.
10.1101/702266 — bioinformatics — Posted on 2019-07-14
2077 CD4+ Th immunogenicity of the Ascaris spp. secreted products
Ebner, F.; Morrison, E.; Bertazzon, M.; Midha, A.; Hartmann, S.; Freund, C.; Álvaro-Benito, M.
10.1101/699231 — immunology — Posted on 2019-07-14
2080 Histone code dictates fate biasing of neural crest cells to melanocyte lineage
Ayyappa Raja, D.; Subramaniam, Y.; Gotherwal, V.; Tanwar, J.; Motiani, R.; Sivasubbu, S.; Gokhale, R. S.; natarajan, v. T.
10.1101/702332 — developmental biology — Posted on 2019-07-14
2081 Cryopreservation of human pluripotent stem cell-derived cardiomyocytes is not detrimental to their molecular and functional properties
van den Brink, L.; Brandao, K. O.; Grandela, C.; Mol, M. P. H.; Mummery, C. L.; Verkerk, A. O.; Davis, R. P.
10.1101/700849 — cell biology — Posted on 2019-07-14
2082 Ins2 gene bursting activity defines a mature beta-cell state
Modi, H.; Skovso, S.; Ellis, C.; Krentz, N. A. J.; Zhao, Y. B.; Cen, H.; Noursadeghi, N.; Panzhinskiy, E.; Hu, X.; Dionne, D. A.; Xuan, S.; Huisind, M. O.; Kieffer, T. J.; Lynn, F. C.; Johnson, J.
10.1101/702589 — cell biology — Posted on 2019-07-14
2084 Enhancing single-cell cellular state inference by incorporating molecular network features
Dong, J.; Zhou, P.; Wu, Y.; Wang, W.; Chen, Y.; Zhou, X.; Xie, H.; Lu, J.; Zhang, X.; Wen, L.; Fu, W.; Li, T.; Tang, F.
10.1101/699959 — bioinformatics — Posted on 2019-07-14
2085 A targeted multi-omic analysis approach measures protein expression and low abundance transcripts on the single cell level
Mair, F.; Erickson, J. R.; Voillet, V.; Simoni, Y.; Bi, T.; Tyznik, A. J.; Martin, J.; Gottardo, R.; Newell, E. W.; Prlic, M.
10.1101/700534 — immunology — Posted on 2019-07-14
2088 The Impact of a Wireless Audio System on Communication in Robotic-Assisted Laparoscopic Surgery: A Prospective Controlled Trial
Tsafrir, Z.; Janosek-Albright, K.; Aoun, J.; Diaz-Insua, M. D.-I.; Abd-El-Barr, A.-E.-R.; Schiff, L.; Talukdar, S.; Menon, M.; Munkarah, A.; Theoharis, E.; Eisenstein, D.
10.1101/701078 — scientific communication and education — Posted on 2019-07-14
2092 Janggu: Deep Learning for Genomics
Kopp, W.; Monti, R.; Tamburrini, A.; Ohler, U.; Akalin, A.
10.1101/700450 — bioinformatics — Posted on 2019-07-14
2095 The CIViC knowledge model and standard operating procedures for curation and clinical interpretation of variants in cancer
Danos, A. M.; Krysiak, K.; Barnell, E. K.; Coffman, A. C.; McMichael, J. F.; Kiwala, S.; Spies, N. C.; Sheta, L. M.; Pema, S. P.; Kujan, L.; Clark, K. A.; Wollam, A. A.; Rao, S.; Ritter, D. I.; Sonkin, D.; Raca, G.; Kim, R. H.; Wagner, A. H.; Madhavan, S.; Griffith, M.; Griffith, O. L.
10.1101/700179 — bioinformatics — Posted on 2019-07-14
2096 An updated analysis of opioids increasing the risk of fractures
Teng, Z.; Yue, Q.; Ma, Y.; Teng, Y.; Zhu, Y.; Liu, H.; Xu, S.; Liu, J.; Liu, J.; Zhang, X.
10.1101/701094 — pharmacology and toxicology — Posted on 2019-07-14
2099 An In-Silico Investigation of Menthol Metabolism
Limpanuparb, T.; Lorpaiboon, W.; Chinsukserm, K.
10.1101/618975 — biochemistry — Posted on 2019-07-13
2102 eIF3 associates with 80S ribosomes to promote translation elongation, mitochondrial homeostasis, and muscle health
Lin, Y.; Li, F.; Huang, L.; Duan, H.; Fang, J.; Sun, L.; Xing, X.; Tian, G.; Cheng, Y.; Yang, X.; Wolf, D. A.
10.1101/651240 — cell biology — Posted on 2019-07-13
2104 Identifying Combinations of Cancer Drivers in Individual Patients
Klein, M. I.; Cannataro, V. L.; Townsend, J. P.; Stern, D. F.; Zhao, H.
10.1101/674234 — bioinformatics — Posted on 2019-07-13
2106 Application of a gut-immune co-culture system for the study of N-glycan-dependent host-pathogen interactions of Campylobacter jejuni
Zamora, C. Y.; Ward, E. M.; Kester, J. C.; Chen, W. L. K.; Velazquez, J. G.; Griffith, L. G.; Imperiali, B.
10.1101/702472 — microbiology — Posted on 2019-07-13
2112 AAV mediated delivery of a novel anti-BACE1 VHH reduces Abeta in an Alzheimer’s disease mouse model
Rincon, M.; Zhou, L.; Marneffe, C.; Voytyuk, I.; Wouters, Y.; Dewilde, M.; Duque, S. I.; Vincke, C.; Levites, Y.; Golde, T. E.; Muyldermans, S.; De Strooper, B.; Holt, M. G.
10.1101/698506 — neuroscience — Posted on 2019-07-13
2114 PAST: Pathway Association Studies Tool
Thrash, A.; Tang, J. D.; DeOrnellis, M.; Peterson, D. G.; Warburton, M. L.
10.1101/691964 — bioinformatics — Posted on 2019-07-13
2115 Automated Brain Masking of Fetal Functional MRI
Rutherford, S.; Sturmfels, P.; Angstadt, M.; Hect, J.; Wiens, J.; van den Heuval, M. I.; Scheinost, D.; Thomason, M.; Sripada, C.
10.1101/525386 — neuroscience — Posted on 2019-07-13
2118 Local frustration determines loop opening in protein-protein association
Stelzl, L. S.; Mavridou, D. A. I.; Baldwin, A.; Ferguson, S. J.; Sansom, M.; Redfield, C.
10.1101/686949 — biophysics — Posted on 2019-07-13
2121 Predictive learning extracts latent space representations from sensory observations
Recanatesi, S.; Farrell, M.; Lajoie, G.; Deneve, S.; Rigotti, M.; Shea-Brown, E.
10.1101/471987 — neuroscience — Posted on 2019-07-13
2125 Horse gluteus is a null-sarcolipin muscle with enhanced sarcoplasmic reticulum calcium transport
Autry, J. M.; Svensson, B.; Carlson, S. F.; Chen, Z.; Espinoza-Fonseca, L. M.; Thomas, D. D.
10.1101/688531 — biochemistry — Posted on 2019-07-13
2128 Gclc deletion in surface-ectoderm tissues induces microphthalmia
Thompson, B.; Chen, Y.; Philippe, J.; Anderson, D.; Prakash, J. G.; Davidson, E.; Apostolopoulos, N.; Schey, K.; Katsanis, N.; Orlicky, D. J.; Thompson, D.; Vasiliou, V.
10.1101/700591 — developmental biology — Posted on 2019-07-13
2129 Temporal regulation of prenatal embryonic development by paternal imprinted loci
Li, J.; Li, Q.; Li, Y.; Yin, Q.; Huang, S.; Wang, K.; Zhuo, L.; Li, W.; Chang, B.
10.1101/700948 — developmental biology — Posted on 2019-07-13
2131 In-depth and 3-Dimensional Exploration of the Budding Yeast Phosphoproteome
Lanz, M. C.; Yugandhar, K.; Gupta, S.; Sanford, E.; Faca, V.; Vega, S.; Joiner, A.; Fromme, C.; Yu, H.; Smolka, M. B.
10.1101/700070 — biochemistry — Posted on 2019-07-13
2135 Oral tenofovir disoproxil fumarate/emtricitabine for HIV pre-exposure prophylaxis increases expression of type I/III interferon-stimulated factors in the gastrointestinal tract but not in the blood
Hughes, S. M.; Levy, C. N.; Calienes, F.; Stekler, J. D.; Pandey, U.; Vojtech, L.; Berard, A. R.; Birse, K.; Noel-Romas, L.; Richardson, B.; Golden, J.; Cartwright, M.; Collier, A. C.; Stevens, C. E.; Curlin, M. E.; Holtz, T. H.; Mugo, N.; Irungu, E.; Katabira, E.; Muwonge, T.; Lama, J. R.; Baeten, J. M.; Burgener, A.; Lingappa, J. R.; McElrath, M. J.; Mackelprang, R.; McGowan, I.; Cranston, R. D.; Cameron, M. J.; Hladik, F.
10.1101/701961 — immunology — Posted on 2019-07-13
2141 A missense mutation dissociates triglyceride and phospholipid transfer activities in zebrafish and human microsomal triglyceride transfer protein
Wilson, M. H.; Rajan, S.; Danoff, A.; White, R. J.; Hensley, M. R.; Quinlivan, V. H.; Thierer, J. H.; Busch-Nentwich, E. M.; Hussain, M. M.; Farber, S. A.
10.1101/701813 — physiology — Posted on 2019-07-13
2145 A new data-driven cell population discovery and annotation method for single-cell data, FAUST, reveals correlates of clinical response to cancer immunotherapy
Greene, E.; Finak, G.; D'Amico, L. A.; Bhardwaj, N.; Church, C. D.; Morishima, C.; Ramchurren, N.; Taube, J. M.; Nghiem, P. T.; Cheever, M. A.; Fling, S. P.; Gottardo, R.
10.1101/702118 — bioinformatics — Posted on 2019-07-13
2147 Insulin potentiates JAK/STAT signaling to broadly inhibit flavivirus replication in insect vectors
Ahlers, L. R. H.; Trammell, C. E.; Carrell, G. F.; Mackinnon, S.; Torrevillas, B. K.; Chow, C. Y.; Luckhart, S.; Goodman, A. G.
10.1101/701714 — microbiology — Posted on 2019-07-13
2148 Genetic risks of schizophrenia identified in a matched case-control study
Oishi, K.; Niitsu, T.; Kanahara, N.; Sato, Y.; Iwayama, Y.; TOYOTA, T.; Hashimoto, T.; Sasaki, T.; Takase, M.; Yoshikawa, T.; Iyo, M.
10.1101/702100 — genetics — Posted on 2019-07-13
2152 Bottleneck Size-Dependent Changes in the Genetic Diversity and Specific Growth Rate of a Rotavirus A Strain
Kadoya, S.-s.; Urayama, S.-i.; Nunoura, T.; Hirai, M.; Takaki, Y.; Kitajima, M.; Nakagomi, T.; Nakagomi, O.; Okabe, S.; Nishimura, O.; Sano, D.
10.1101/702233 — microbiology — Posted on 2019-07-13
2153 Multiple Measures Reveal The Value of Both Race And Geographic Ancestry For Self-Identification
Damotte, V.; Zhao, C.; Lin, C.; Williams, E.; Louzoun, Y.; Madbouly, A.; Kotlarz, R.; McDaniel, M.; Norman, P. J.; Lizee, A.; Myres, N. M.; Ball, C. A.; Chahine, K. G.; Byrnes, J.; Wang, Y.; Maiers, M.; Hollenbach, J. A.
10.1101/701698 — genetics — Posted on 2019-07-13
2154 Giotto, a pipeline for integrative analysis and visualization of single-cell spatial transcriptomic data
Dries, R.; Zhu, Q.; Eng, C.-H. L.; Sarkar, A.; Bao, F.; George, R. E.; Pierson, N.; Cai, L.; Yuan, G.-C.
10.1101/701680 — bioinformatics — Posted on 2019-07-13
2155 Metabolic dependency of chorismate in Plasmodium falciparum
Valenciano, A. L.; Fernandez-Murga, M. L.; Merino, E. F.; Holderman, N. R.; Butschek, G. J.; Shaffer, K. J.; Tyler, P. C.; Cassera, M. B.
10.1101/698951 — biochemistry — Posted on 2019-07-13
2162 A structural mechanism for phosphorylation-dependent inactivation of the AP2 complex
Partlow, E. A.; Baker, R. W.; Beacham, G. M.; Chappie, J. S.; Leschziner, A. E.; Hollopeter, G.
10.1101/701532 — cell biology — Posted on 2019-07-13
2163 Phenylacetyl-CoA, not phenylacetic acid, mediates quorum sensing-regulated virulence in Burkholderia cenocepacia
Lightly, T. J.; Frejuk, K. L.; Groleau, M.-C.; Chiarelli, L. R.; Ras, C.; Buroni, S.; Deziel, E.; Sorensen, J. L.; Cardona, S. T.
10.1101/700799 — microbiology — Posted on 2019-07-13
2165 Cyclin B1-Cdk1 binding to MAD1 links nuclear pore disassembly to chromosomal stability
Jackman, M.; Marcozzi, C.; Pardo, M.; Yu, L.; Tyson, A. L.; Choudhary, J. S.; Pines, J.
10.1101/701474 — cell biology — Posted on 2019-07-13
2166 BRCA1 Mediated Homologous Recombination and S Phase DNA Repair Pathways Restrict LINE-1 Retrotransposition in Human Cells
Sun, X.; Mita, P.; Kahler, D. J.; Li, D.; Wudzinska, A.; Yun, C.; Bader, J. S.; Fenyo, D.; Boeke, J. D.
10.1101/701458 — cell biology — Posted on 2019-07-13
2168 Bacterial fucosidase enables the production of Bombay red blood cells
Li, T.; Ye, J.; Wang, L.; Zou, L.; Guo, Y.; Hou, L.; Shen, D.; Cai, X.; Huang, H.; Sun, G.; Chen, L.
10.1101/695213 — molecular biology — Posted on 2019-07-12
2170 Skewed distributions of LRS: beyond mean and variance
Tuljapurkar, S.; Zuo, W.; Coulson, T.; Horvitz, C.; Gaillard, J.-M.
10.1101/696500 — ecology — Posted on 2019-07-12
2174 Intense light-mediated circadian cardioprotection via transcriptional reprogramming of the endothelium
Oyama, Y.; Bartman, C. M.; Bonnie, S.; Lee, J. S.; Walker, L. A.; Han, J.; Borchers, C. H.; Buttrick, P. M.; Aherne, C.; Clendenen, N.; Colgan, S. P.; Eckle, T.
10.1101/561340 — cell biology — Posted on 2019-07-12
2176 Temporal changes in genetic admixture are linked to heterozygosity and health diagnoses in humans
Mautz, B. S.; Hellwege, J.; Li, C.; Xu, Y.; Zhang, S.; Denny, J. C.; Roden, D. M.; McGregor, T. L.; Velez Edwards, D. R.; Edwards, T. L.
10.1101/697581 — genetics — Posted on 2019-07-12
2177 Human biting Culex pipiens bioform molestus is spread in several areas in south Sweden.
Luande, V. N.; Eklof, D.; Lindstrom, A.; Nyanjom, S.; Evander, M.; Lilja, T.
10.1101/616706 — ecology — Posted on 2019-07-12
2179 Transcriptome profiling of mouse samples using nanopore sequencing of cDNA and RNA molecules
Sessegolo, C.; Cruaud, C.; Da Silva, C.; Cologne, A.; Dubarry, M.; Derrien, T.; Lacroix, V.; Aury, J.-M.
10.1101/575142 — bioinformatics — Posted on 2019-07-12
2180 Microbiota supplementation with Bifidobacterium and Lactobacillus modifies the preterm infant gut microbiota and metabolome
Alcon-Giner, C.; Dalby, M.; Caim, S.; Ketskemety, J.; Shaw, A.; Sim, K.; Lawson, M.; Kiu, R.; Leclaire, C.; Chalklen, L.; Kujawska, M.; Mitra, S.; Fardus-Reid, F.; Belteki, G.; Lloyd, K.; Swann, J.; Kroll, S.; Clarke, P.; Hall, L. J.
10.1101/698092 — microbiology — Posted on 2019-07-12
2181 Sequencing, de novo assembly and annotation of the genome of the scleractinian coral, Pocillopora acuta
Vidal-Dupiol, J.; Chaparro, C.; Pratlong, M.; Pontaroti, P.; Grunau, C.; Mitta, G.
10.1101/698688 — genomics — Posted on 2019-07-12
2185 A reference map of the human proinsulin biosynthetic interaction network
Tran, D. T.; Pottekat, A.; Mir, S. A.; Jang, I.; Loguercio, S.; Campos, A. R.; Lahmy, R.; Liu, M.; Arvan, P.; Balch, W. E.; Kaufman, R. J.; Itkin-Ansari, P.
10.1101/699132 — biochemistry — Posted on 2019-07-12
2186 Unexpected Complexity Of Everyday Manual Behaviors
Yan, Y.; Goodman, J. M.; Moore, D. D.; Bensmaia, S. J.
10.1101/694778 — neuroscience — Posted on 2019-07-12
2187 Elimination of reference mapping bias reveals robust immune related allele-specific expression in cross-bred sheep
Salavati, M.; Bush, S. J.; Palma-Vera, S.; McCulloch, M. E. B.; Hume, D.; Clark, E. L.
10.1101/619122 — genomics — Posted on 2019-07-12
2190 Dynamic trafficking and turnover of Jam-C is essential for endothelial cell migration
Kostelnik, K. B.; Barker, A.; Schultz, C.; Rajeeve, V.; White, I. J.; Aurrand-Lions, M.; Nourshargh, S.; Cutillas, P.; Nightingale, T. D.
10.1101/625913 — cell biology — Posted on 2019-07-12
2191 Deriving stratified effects from joint models investigating Gene-Environment Interactions
Laville, V.; Majarian, T.; de Vries, P. S.; Bentley, A. R.; Feitosa, M. F.; Sung, Y. J.; Rao, D.; Manning, A.; Aschard, H.; CHARGE Gene-Lifestyle Interaction Working Group,
10.1101/693218 — bioinformatics — Posted on 2019-07-12
2196 Tau pathology in cognitively normal older adults
Ziontz, J.; Bilgel, M.; Shafer, A.; Moghekar, A.; Elkins, W.; Helphrey, J.; Gomez, G.; June, D.; McDonald, M. A.; Dannals, R. F.; Azad, B. B.; Ferrucci, L.; Wong, D. F.; Resnick, S. M.
10.1101/611186 — neuroscience — Posted on 2019-07-12
2199 Transcription factor NF-κB in a basal metazoan, the sponge, has conserved and unique sequences, activities, and regulation
Williams, L. M.; Inge, M. M.; Mansfield, K. M.; Rasmussen, A.; Afghani, J.; Agrba, M.; Albert, C.; Andersson, C.; Babaei, M.; Babaei, M.; Bagdasaryants, A.; Bonilla, A.; Browne, A.; Carpenter, S.; Chen, T.; Christie, B.; Cyr, A.; Dam, K.; Dulock, N.; Erdene, G.; Esau, L.; Esonwune, S.; Hanchate, A.; Huang, X.; Jennings, T.; Kasabwala, A.; Kehoe, L.; Kobayashi, R.; Lee, M.; LeVan, A.; Liu, Y.; Murphy, E.; Nambiar, A.; Olive, M.; Patel, D.; Pavesi, F.; Petty, C. A.; Samofalova, Y.; Sanchez, S.; Stejskal, C.; Tang, Y.; Yapo, A.; Cleary, J. P.; Yunes, S. A.; Siggers, T.; Gilmore, T. D.
10.1101/691097 — cell biology — Posted on 2019-07-12
2200 Metabolic pathway rerouting in Paraburkholderia rhizoxinica evolved long-overlooked derivatives of coenzyme F420
Braga, D.; Last, D.; Hasan, M.; Guo, H.; Leichnitz, D.; Uzum, Z.; Richter, I.; Schalk, F.; Beemelmanns, C.; Hertweck, C.; Lackner, G.
10.1101/670455 — biochemistry — Posted on 2019-07-12
2202 Analysing linear multivariate pattern transformations in neuroimaging data
Basti, A.; Mur, M.; Kriegeskorte, N.; Pizzella, V.; Marzetti, L.; Hauk, O.
10.1101/497180 — neuroscience — Posted on 2019-07-12
2203 Sphingomyelin biosynthesis is essential for phagocytic signaling during Mycobacterium tuberculosis host cell entry
Niekamp, P.; Guzman, G.; Leier, H.; Rashidfarrokhi, A.; Richina, V.; Pott, F.; Holthuis, J.; Tafesse, F. G.
10.1101/565226 — microbiology — Posted on 2019-07-12
2204 CD29 marks superior cytotoxic human T cells
Nicolet, B. P.; Guislain, A.; van Alphen, F. P. J.; Gomez-Eerland, R.; Schumacher, T. N. M.; van den Biggelaar, M.; Wolkers, M.
10.1101/562512 — immunology — Posted on 2019-07-12
2208 Assessing metacommunity processes through signatures in spatiotemporal turnover of community composition
Jabot, F.; Laroche, F.; Massol, F.; Arthaud, F.; Crabot, J.; Dubart, M.; Blanchet, S.; Munoz, F.; David, P.; Datry, T.
10.1101/480335 — ecology — Posted on 2019-07-12
2212 Decoding brain functional connectivity implicated in AD and MCI
Gupta, S.; Chan, Y. H.; Rajapakse, J. C.; Alzheimers Disease Neuroimaging Initiative,
10.1101/697003 — neuroscience — Posted on 2019-07-12
2213 Pre- and post-synaptic roles for DCC in memory consolidation in the adult mouse hippocampus.
Glasgow, S. D.; Wong, E. W.; Thompson-Steckel, G.; Seguela, P.; Ruthazer, E. S.; Kennedy, T. E.
10.1101/697631 — neuroscience — Posted on 2019-07-12
2214 Alternative splicing modulation by G-quadruplexes
Georgakopoulos Soares, I.; Parada, G. E.; Wong, H. Y.; Miska, E. A.; Kwok, C. K. K.; Hemberg, M.
10.1101/700575 — genomics — Posted on 2019-07-12
2215 The GATA transcription factor Gaf1 represses tRNA genes, inhibits growth, and extends chronological lifespan downstream of fission yeast TORC1
Rodriguez-Lopez, M.; Gonzalez, S.; Hillson, O.; Tunnacliffe, E.; Codlin, S.; Tallada, V.; Bahler, J.; Rallis, C.
10.1101/700286 — genetics — Posted on 2019-07-12
2216 Automated osteosclerosis grading of clinical biopsies using infrared spectroscopic imaging
Mankar, R.; Bueso-Ramps, C. E.; Yin, C. C.; Hidalgo-Lopez, J. E.; Berisha, S.; Kansiz, M.; Mayerich, D.
10.1101/692434 — bioinformatics — Posted on 2019-07-12
2218 Combined inhibition of mTOR and PIKKs exploits replicative and checkpoint vulnerabilities to induce death of PI3K-activated triple-negative breast cancer cells
Chopra, S. S.; Jenney, A.; Palmer, A.; Niepel, M.; Chung, M.; Mills, C.; Sivakumaren, S. C.; Liu, Q.; Chen, J.-Y.; Yapp, C.; Asara, J.; Gray, N. S.; Sorger, P. K.
10.1101/700625 — cancer biology — Posted on 2019-07-12
2221 P38α Regulates Expression of DUX4 in Facioscapulohumeral Muscular Dystrophy
Rojas, L. A.; Valentine, E.; Accorsi, A.; Maglio, J.; Shen, N.; Robertson, A.; Kazmirski, S.; Rahl, P.; Tawil, R.; Cadavid, D.; Thompson, L. A.; Ronco, L.; Chang, A. N.; Cacace, A. M.; Wallace, O.
10.1101/700195 — developmental biology — Posted on 2019-07-12
2224 Two C-terminal sequence variations determine differential neurotoxicity between human and mouse α-synuclein
Landeck, N.; Strathearn, K. E.; Ysselstein, D.; Buck, K.; Dutta, S.; Banerjee, S.; Lv, Z.; Hulleman, J. D.; Hindupur, J.; Lin, L.-K.; Padalkar, S.; McCabe, G. P.; Stanciu, L. A.; Lyubchenko, Y. L.; Kirik, D.; Rochet, J.-C.
10.1101/700377 — neuroscience — Posted on 2019-07-12
2228 Assembly of hundreds of novel bacterial genomes from the chicken caecum
Glendinning, L.; Stewart, R. D.; Pallen, M. J.; Watson, K. A.; Watson, M.
10.1101/699843 — microbiology — Posted on 2019-07-12
2232 The heterogeneous functional architecture of the posteromedial cortex is associated with selective functional connectivity differences in Alzheimer’s disease
Khan, W.; Amad, A.; Giampietro, V.; Werden, E.; De Simoni, S.; O'Muircheartaigh, J.; Westman, E.; O'Daly, O.; Williams, S. C.; Brodtmann, A.
10.1101/700856 — neuroscience — Posted on 2019-07-12
2234 Blue sky’s the limit? Somatic embryogenesis as a means of propagating recalcitrant blue spruce (Picea pungens) cultivar Hoopsii
Demone, J. J.; Mao, J.; Wan, S.; Nourimand, M.; Hansen, A. E.; Flinn, B.; Facchin, O.; Prost, A.; Altosaar, I.
10.1101/700518 — plant biology — Posted on 2019-07-12
2237 Refgenie: a reference genome resource manager
Stolarczyk, M.; Reuter, V. P.; Magee, N. E.; Sheffield, N. C.
10.1101/698704 — bioinformatics — Posted on 2019-07-12
2238 The methodological quality of animal studies: A cross-sectional study based on the SYRCLEs risk of bias tool
Zhang, W.; Jiang, Y.; Shang, Z.; Zhang, N.; Tao, G.; Zhang, T.; Hu, K.; Li, Y.; Shi, X.; Zhang, Y.; Yang, J.; Ma, B.; Yang, K.
10.1101/701110 — scientific communication and education — Posted on 2019-07-12
2239 Cell growth kinetics and accumulation of secondary metabolite of Bletilla striata Rchb.f. using cell suspension culture
Xu, D.; Pan, Y.; Xiao, S.; Chen, Z.; Sarsaiya, S.; Zhang, S.; Shangguan, Y.; Liu, H.; Li, L.; Chen, J.
10.1101/698258 — plant biology — Posted on 2019-07-12
2244 Tissue micro-RNAs associated with colorectal cancer prognosis: a systematic review
Lopes dos Santos, I.; Greick Batista Dias Penna, K.; Aparecida dos Santos Carneiro, M.; Silva Dalla Libera, L.; Enocencio Porto Ramos, J.; Aparecida Saddi, V.
10.1101/701128 — molecular biology — Posted on 2019-07-12
2246 Cell Fate Clusters in ICM Organoids Arise from Cell Fate Heredity & Division - a Modeling Approach
Liebisch, T.; Drusko, A.; Mathew, B.; Stelzer, E.; Fischer, S. C.; Matthäus, F.
10.1101/698928 — systems biology — Posted on 2019-07-12
2247 Approaches by Rhodotorula mucilaginosa from a chronic kidney disease patient for elucidating the pathogenicity profile by this emergent species
Jarros, I. C.; Veiga, F. F.; Correa, J. L.; Barros, I. L. E.; Gadelha, M. C.; Voidaleski, M. F.; Pieralisi, N. E.; Pedroso, R. B.; Vicente, V. A.; Negri, M. E.; Svidzinski, T. I. E.
10.1101/701052 — microbiology — Posted on 2019-07-12
2250 Effects of amotosalen treatment on human platelet lysate bioactivity
Christensen, C.; Jonsdottir-Buch, S. M.; Sigurjonsson, O. E.
10.1101/699496 — cell biology — Posted on 2019-07-12
2251 A Predictive Model of Intercellular Tension and Cell-Matrix Mechanical Interactions in a Multicellular Geometry
Scott, L. E.; Griggs, L. A.; Narayanan, V.; Conway, D. E.; Lemmon, C. A.; Weinberg, S. H.
10.1101/701037 — cell biology — Posted on 2019-07-12
2252 SiZer Map to investigate significant features of body-weight profile changes in HIV infected patients in the IeDEA Collaboration
Harezlak, J.; Wools-Kaloustian, K.; Sarwat, S.; Balestre, E.; Schomaker, M.; Law, M.; Kiertiburanakul, S.; Fox, M.; Huis in t Veld, D.; Musick, B. S.; Yiannoutsos, C. T.; International Epidemiology Databases to Evaluate A,
10.1101/699546 — bioinformatics — Posted on 2019-07-12
2253 A low-cost fluorescence reader for in vitro transcription and nucleic acid detection with Cas13a
Katzmeier, F.; Aufinger, L.; Dupin, A.; Quinteiro, J.; Lenz, M.; Bauer, L.; Klumpe, S.; Sherpa, D.; Dürr, B.; Honemann, M.; Styazhkin, I.; Simmel, F. C.; Heymann, M.
10.1101/698357 — bioengineering — Posted on 2019-07-12
2255 In vitro reconstitution of branched microtubule nucleation
Tariq, A.; Green, L.; Jeynes, J. C. G.; Soeller, C.; Wakefield, J.
10.1101/700419 — cell biology — Posted on 2019-07-11
2258 Differential expansion microscopy
Pernal, S. P.; Liyanaarachchi, A.; Gatti, D. L.; Formosa, B.; Pulvender, R.; Kuhn, E. R.; Ramos, R.; Naik, A. R.; George, K.; Arslanturk, S.; Taatjes, D. J.; Jena, B. P.
10.1101/699579 — cell biology — Posted on 2019-07-11
2259 Getting Beyond Interruptive Alerts: Reducing Unintentional Duplicate Orders using a Visual Aid
Horng, S.; Joseph, J.; Calder, S.; Stevens, J. P.; O'Donoghue, A. L.; Safran, C.; Nathanson, L. A.; Leventhal, E.
10.1101/640318 — bioinformatics — Posted on 2019-07-11
2260 Molecular Architecture of the Bardet-Biedl Syndrome 2-7-9 Subcomplex
Ludlam, W. G.; Aoba, T.; Cuellar, J.; Bueno-Carrasco, M. T.; Makaju, A.; Moody, J. D.; Franklin, S.; Valpuesta, J. M.; Willardson, B. M.
10.1101/699223 — biochemistry — Posted on 2019-07-11
2262 Detection of simple and complex de novo mutations without, with, or with multiple reference sequences
Garimella, K. V.; Iqbal, Z.; Krause, M.; Campino, S.; Kekre, M.; Drury, E.; Kwiatkowski, D.; Sa, J. M.; Wellems, T. E.; McVean, G.
10.1101/698910 — bioinformatics — Posted on 2019-07-11
2265 Lotus japonicus symbiosis genes impact microbial interactions between symbionts and multikingdom commensal communities
Thiergart, T.; Zgadzaj, R.; Bozsoki, Z.; Garridoo Oter, R.; Radutoiu, S.; Schulze-Lefert, P.
10.1101/547687 — plant biology — Posted on 2019-07-11
2271 Chromosome-scale assembly comparison of the Korean Reference Genome KOREF from PromethION and PacBio with Hi-C mapping information
Kim, H.-S.; Jeon, S.; Kim, C.; Kim, Y. K.; Cho, Y. S.; Kim, J.; Blazyte, A.; Manica, A.; Lee, S.; Bhak, J.
10.1101/674804 — genomics — Posted on 2019-07-11
2275 Cervical spinal cord atrophy and Alzheimer’s disease
Lorenzi, R.; Palesi, F.; Castellazzi, G.; Vitali, P.; Anzalone, N.; Bernini, S.; Sinforiani, E.; Micieli, G.; Costa, A.; D'Angelo, E. U.; Gandini Wheeler-Kingshott, C. A. M.
10.1101/673350 — neuroscience — Posted on 2019-07-11
2277 Immune tolerance of human induced pluripotent stem cell-derived myogenic progenitor cells in humanized mice
Benabdallah, B.; Desaulniers-Langevin, C.; Goyer, M.-L.; Colas, C.; Maltais, C.; Li, Y.; Guimond, J. V.; Tremblay, J. P.; Haddad, E.; Beausejour, C.
10.1101/550699 — cell biology — Posted on 2019-07-11
2278 Tissue structure accelerates evolution: premalignant sweeps precede neutral expansion
West, J.; Schenck, R.; Gatenbee, C.; Robertson-Tessi, M.; Anderson, A. R.
10.1101/542019 — cancer biology — Posted on 2019-07-11
2283 A semi-supervised approach for cell phenotypic and functional estimation in tissue microenvironment
Chang, W.; Wan, C.; Zhang, Y.; So, K.; Richardson, B.; Sun, Y.; Zhang, X.; Huang, K.; Zhang, A.; Lu, X.; Cao, S.; Zhang, C.
10.1101/426593 — bioinformatics — Posted on 2019-07-11
2284 Light responses of melanopsin-expressing ganglion cells in the foetal mammalian retina
Verweij, J.; Chaney, S.; Bredl, D.; Vemaraju, S.; Konig, G.; Kostenis, E.; Lang, R.; Copenhagen, D.
10.1101/675702 — neuroscience — Posted on 2019-07-11
2287 MetaNovo: a probabilistic approach to peptide and polymorphism discovery in complex mass spectrometry datasets
Potgieter, M. G.; Nel, A. J.; Tabb, D. L.; Fortuin, S.; Garnett, S.; Wendoh, J. M.; Blackburn, J.; Mulder, N.
10.1101/605550 — bioinformatics — Posted on 2019-07-11
2288 Influence of expected reward on perceptual decision making
Rakhshan, M.; Lee, V.; Chu, E.; Harris, L.; Laiks, L.; Khorsand, P.; Soltani, A.
10.1101/506790 — neuroscience — Posted on 2019-07-11
2289 CD8+ lymphocytes modulate Zika virus dynamics and tissue dissemination and orchestrate antiviral immunity
Schouest, B.; Fahlberg, M.; Scheef, E. A.; Ward, M. J.; Headrick, K.; Szeltner, D. M.; Blair, R. V.; Gilbert, M. H.; Doyle-Meyers, L. A.; Danner, V. W.; Bonaldo, M. C.; Wesson, D. M.; Panganiban, A. T.; Maness, N. J.
10.1101/475418 — immunology — Posted on 2019-07-11
2290 CTCF-dependent chromatin boundaries formed by asymmetric nucleosome arrays with decreased linker length
Clarkson, C. T.; Deeks, E. A.; Samarista, R.; Mamayusupova, H.; Zhurkin, V. B.; Teif, V. B.
10.1101/618827 — genomics — Posted on 2019-07-11
2292 ADAPTS: Automated Deconvolution Augmentation of Profiles for Tissue Specific cells
Danziger, S. A.; Gibbs, D. L.; Shmulevich, I.; McConnell, M.; Trotter, M. W.; Schmitz, F.; Reiss, D. J.; Ratushny, A. V.
10.1101/633958 — bioinformatics — Posted on 2019-07-11
2293 How well do routine molecular diagnostics detect rifampicin heteroresistance in Mycobacterium tuberculosis?
Ng, K. C. S.; Supply, P.; Cobelens, F.; Gaudin, C.; Gonzalez-Martin, J.; de Jong, B. C.; Rigouts, L.
10.1101/632851 — microbiology — Posted on 2019-07-11
2294 Acquired interbacterial defense systems protect against interspecies antagonism in the human gut microbiome
Ross, B. D.; Verster, A. J.; Radey, M. C.; Schmidtke, D. T.; Pope, C. E.; Hoffman, L. R.; Hajjar, A.; Peterson, S. B.; Borenstein, E.; Mougous, J.
10.1101/471110 — microbiology — Posted on 2019-07-11
2300 Sub-nucleosomal organization in urine cell-free DNA
Markus, H.; Zhao, J.; Contente-Cuomo, T.; Raupach, E.; Odenheimer, A.; Connor, S.; McDonald, B. R.; Hutchins, E.; McGilvery, M.; de la Maza, M. C.; Van Keuren-Jensen, K.; Pirrotte, P.; Goel, A.; Becerra, C.; Von Hoff, D. D.; Celinski, S. A.; Hingorani, P.; Murtaza, M.
10.1101/696633 — genomics — Posted on 2019-07-11
2304 Sequencing, de novo assembly and annotation of the genome of the scleractinian coral, Pocillopora acuta
Vidal-Dupiol, J.; Chaparro, C.; Pratlong, M.; Pontaroti, P.; Grunau, C.; Mitta, G.
10.1101/698688 — genomics — Posted on 2019-07-11
2306 Plasma CD163 and FABP4 are associated with residual liver disease and fibrosis recovery during treatment-induced clearance of chronic HCV infection
Gorin, J.-B.; Malone, D. F. G.; Strunz, B.; Carlsson, T.; Aleman, S.; Björkström, N. K.; Falconer, K.; Sandberg, J. K.
10.1101/698217 — immunology — Posted on 2019-07-11
2308 Model to link cell shape and polarity with organogenesis
Nielsen, B. F.; Nissen, S. B.; Sneppen, K.; Trusina, A.; Mathiesen, J.
10.1101/699413 — developmental biology — Posted on 2019-07-11
2310 Accurate and Sensitive Quantitation of the Dynamic Heat Shock Proteome using Tandem Mass Tags
Storey, A. J.; Hardman, R. E.; Byrum, S. D.; Mackintosh, S. G.; Edmondson, R. D.; Wahls, W. P.; Tackett, A. J.; Lewis, J. A.
10.1101/696641 — genomics — Posted on 2019-07-11
2311 VolcanoFinder: genomic scans for adaptive introgression
Setter, D.; Mousset, S.; Cheng, X.; Nielsen, R.; DeGiorgio, M.; Hermisson, J.
10.1101/697987 — evolutionary biology — Posted on 2019-07-11
2313 Impact of Ferumoxytol Magnetic Resonance Imaging on the Rhesus Macaque Maternal-Fetal Interface
Nguyen, S. M.; Wiepz, G. J.; Schotzko, M.; Simmons, H. A.; Mejia, A.; Ludwig, K. D.; Zhu, A.; Brunner, K.; Hernando, D.; Reeder, S. B.; Wieben, O.; Johnson, K.; Shah, D.; Golos, T. G.
10.1101/699835 — physiology — Posted on 2019-07-11
2314 Aging skeletal muscle proteomics finds changes in spliceosome, immune factors, proteostasis and mitochondria
Ubaida-Mohien, C.; Lyashkov, A.; Gonzalez-Freire, M.; Tharakan, R.; Shardell, M.; Ruin Moaddel, R.; Semba, R. D.; Chia, C. W.; Gorospe, M.; Sen, R.; Ferrucci, L.
10.1101/700468 — physiology — Posted on 2019-07-11
2316 Circular RNAs in the ageing African turquoise killifish
Metge, F.; Kim, Y.; Boucas, J.; Dieterich, C.; Valenzano, D. R.
10.1101/699694 — genomics — Posted on 2019-07-11
2317 SERCA2a-activating PLB mutant improves calcium handling in dilated cardiomyopathy model of hiPSC-CMs
Stroik, D. R.; Ceholski, D. K.; Thanel, P. F.; Bidwell, P. A.; Autry, J. M.; Cornea, R. L.; Thomas, D. D.
10.1101/699975 — biophysics — Posted on 2019-07-11
2318 Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study
Liu, X.; Nudel, R.; Thompson, W. K.; Appadurai, V.; Schork, A. J.; Buil, A.; Rasmussen, S.; Allesoee, R. L.; Werge, T.; Mors, O.; Boerglum, A. D.; Hougaard, D. M.; Mortensen, P. B.; Nordentoft, M.; Benros, M. E.
10.1101/699462 — bioinformatics — Posted on 2019-07-11
2324 HIV-1 Nef interacts with LMP7 to attenuate immunoproteasome formation and MHC-I antigen presentation
Yang, Y.; Liu, W.; Hu, D.; Su, R.; Ji, M.; Huang, Y.; Shereen, M. A.; Xu, X.; Luo, Z.; Zhang, Q.; Liu, F.; Wu, K.; Liu, Y.; Wu, J.
10.1101/697946 — microbiology — Posted on 2019-07-11
2326 Human induced pluripotent stem cell-derived neuroectodermal epithelial cells mistaken for blood-brain barrier-forming endothelial cells
Lu, T. M.; Redmond, D.; Magdeldin, T.; Nguyen, D. T.; Snead, A.; Sproul, A.; Xiang, J.; Fine, H. A.; Shido, K.; Rosenwaks, Z.; Rafii, S.; Agalliu, D.; Lis, R.
10.1101/699173 — cell biology — Posted on 2019-07-11
2330 The Tuberous Sclerosis gene, Tsc1, represses parvalbumin+/fast-spiking properties in somatostatin-lineage cortical interneurons
Malik, R.; Pai, E. L.-L.; Rubin, A. N.; Stafford, A. M.; Angara, K.; Minasi, P.; Rubenstein, J. L.; Sohal, V. S.; Vogt, D.
10.1101/699892 — neuroscience — Posted on 2019-07-11
2331 Genetic basis of susceptibility to Diplodia sapinea and Armillaria ostoyae in maritime pine
Hurel, A.; de Miguel, M.; Dutech, C.; Desprez-Loustau, M.-L.; Plomion, C.; Rodriguez-Quilon, I.; Cyrille, A.; Guzman, T.; Alia, R.; Gonzalez-Martinez, S. C.; Budde, K. B.
10.1101/699389 — genetics — Posted on 2019-07-11
2334 Transfer of CRISPR-like activity of MIMIVIRE into Bacteria
Azza, S.; La Scola, B.; Levasseur, A.; Perrin, P.; Chabriere, E.; Raoult, D.
10.1101/697250 — microbiology — Posted on 2019-07-11
2335 Gene expression profiles complement the analysis of genomic modifiers of the clinical onset of Huntington disease
Wright, G. E. B.; Caron, N. S.; Ng, B.; Casal, L.; Xu, X.; Ooi, J.; Pouladi, M. A.; Mostafavi, S.; Ross, C. J. D.; Hayden, M. R.
10.1101/699033 — genomics — Posted on 2019-07-11
2339 Engineering Phage Host-Range and Suppressing Bacterial Resistance Through Phage Tail Fiber Mutagenesis
Yehl, K.; Lemire, S.; Yang, A. C.; Ando, H.; Mimee, M.; Torres, M.; Fuente-Nunez, C.; Lu, T. K.
10.1101/699090 — synthetic biology — Posted on 2019-07-11
2340 HLA upregulation during dengue virus infection suppresses the natural killer cell response
McKechnie, J. L.; Beltran, D.; Pitti, A.; Saenz, L.; Arauz, A. B.; Vergara, R.; Harris, E.; Lanier, L. L.; Blish, C. A.; Lopez-Verges, S.
10.1101/698803 — immunology — Posted on 2019-07-11
2342 Temporal changes in genetic admixture are linked to heterozygosity and health diagnoses in humans
Mautz, B. S.; Hellwege, J.; Li, C.; Xu, Y.; Zhang, S.; Denny, J. C.; Roden, D.; McGregor, T. L.; Velez Edwards, D. R.; Edwards, T. L.
10.1101/697581 — genetics — Posted on 2019-07-11
2343 Ultraconserved non-coding DNA within insect phyla
Brody, T.; Yavatkar, A.; Kuzin, A.; Odenwald, W. F.
10.1101/696005 — bioinformatics — Posted on 2019-07-11
2344 Cognitive control of orofacial and vocal responses in the human frontal cortex
Loh, K. K.; procyk, e.; Neveu, R.; Lamberton, F.; Hopkins, W.; Petrides, M.; Amiez, C.
10.1101/698613 — neuroscience — Posted on 2019-07-11
2345 A reference map of the human proinsulin biosynthetic interaction network
Tran, D. T.; Pottekat, A.; Mir, S. A.; Jang, I.; Loguercio, S.; Campos, A. R.; Lahmy, R.; Liu, M.; Arvan, P.; Balch, W. E.; Kaufman, R. J.; Itkin-Ansari, P.
10.1101/699132 — biochemistry — Posted on 2019-07-11
2346 Molecular Architecture of the Bardet-Biedl Syndrome 2-7-9 Subcomplex
Ludlam, W. G.; Aoba, T.; Cuellar, J.; Bueno-Carrasco, M. T.; Makaju, A.; Moody, J. D.; Franklin, S.; Valpuesta, J. M.; Willardson, B. M.
10.1101/699223 — biochemistry — Posted on 2019-07-11
2350 tRNA 2-O-methylation modulates small RNA silencing and life span in Drosophila.
Angelova, M. T.; Dimitrova, D. G.; da Silva, B.; Marchand, V.; Goyenvalle, C.; Achour, C.; Jacquier, C.; Bourguignon-Igel, V.; Shehzada, S.; Guerineau, V.; Roignant, J.-Y.; Antoniewski, C.; Teysset, L.; Bregeon, D.; Schaefer, M. R.; Motorin, Y.; Carre, C.
10.1101/699934 — molecular biology — Posted on 2019-07-11
2353 Detection of Reticuloendotheliosis Virus in Brazil
Caleiro, G. S.; Nunes, C. F.; Urbano, P. R.; Kirchgatter, K.; de Araujo, J.; Durigon, E. L.; Thomazelli, L. M.; Stewart, B. M.; Edwards, D. C.; Romano, C. M.
10.1101/698985 — ecology — Posted on 2019-07-11
2356 Comparative evaluation of full-length isoform quantification from RNA-Seq
Sarantopoulou, D.; Nayak, S.; Brooks, T. G.; Lahens, N. F.; Grant, G. R. R.
10.1101/698605 — bioinformatics — Posted on 2019-07-11
2357 Effects of prefrontal tDCS on dopamine-mediated behavior and psychophysiology
Imburgio, M. J.; Ballard, H. K.; Cornwall, A. C.; Worthy, D. A.; Bernard, J. A.; Orr, J. M.
10.1101/697466 — neuroscience — Posted on 2019-07-11
2360 LRRK2 regulates innate immune responses and neuroinflammation during Mycobacterium tuberculosis infection
Weindel, C. G.; Bell, S. L.; Huntington, T. E.; Vail, K.; Srinivasan, R.; Patrick, K.; Watson, R. O.
10.1101/699066 — immunology — Posted on 2019-07-11
2361 Detection of simple and complex de novo mutations without, with, or with multiple reference sequences
Garimella, K. V.; Iqbal, Z.; Krause, M.; Campino, S.; Kekre, M.; Drury, E.; Kwiatkowski, D.; Sa, J. M.; Wellems, T. E.; McVean, G.
10.1101/698910 — bioinformatics — Posted on 2019-07-11
2362 The place-cell representation of volumetric space in rats
Grieves, R. M.; Jedidi-Ayoub, S.; Mishchanchuk, K.; Liu, A.; Renaudineau, S.; Jeffery, K. J.
10.1101/698175 — animal behavior and cognition — Posted on 2019-07-11
2363 Computational metabolomics hints at the relevance of glutamine metabolism in breast cancer
Trilla-Fuertes, L.; Gamez-Pozo, A.; Lopez-Camacho, E.; Prado-Vazquez, G.; Zapater-Moros, A.; Lopez-Vacas, R.; Arevalillo, J. M.; Diaz-Almiron, M.; Navarro, H.; Main, P.; Espinosa, E.; Zamora, P.; Fresno Vara, J. A.
10.1101/370221 — systems biology — Posted on 2019-07-11
2365 From Single Neurons to Behavior in the Jellyfish Aurelia aurita
Pallasdies, F.; Goedeke, S.; Braun, W.; Memmesheimer, R.-M.
10.1101/698548 — neuroscience — Posted on 2019-07-11
2367 A Competitive-Aging Method for Quantitative Genetic Analysis of the Chronological Lifespan of Saccharomyces cerevisiae
Avelar-Rivas, J. A.; Mungiua-Figueroa, M.; Juarez-Reyes, A.; Garay, E.; Campos, S. E.; Shoresh, N.; DeLuna, A.
10.1101/696682 — genetics — Posted on 2019-07-11
2369 The fate of carbon in a mature forest under carbon dioxide enrichment
Jiang, M.; Medlyn, B. E.; Drake, J. E.; Duursma, R. A.; Anderson, I. C.; Barton, C. V. M.; Boer, M. M.; Carrillo, Y.; Castaneda-Gomez, L.; Collins, L.; Crous, K. Y.; De Kauwe, M. G.; Emmerson, K. M.; Facey, S. L.; Gherlenda, A. N.; Gimeno, T. E.; Hasegawa, S.; Johnson, S. N.; Macdonald, C. A.; Mahmud, K.; Moore, B. D.; Nazaries, L.; Nielsen, U. N.; Noh, N. J.; Ochoa-Hueso, R.; Pathare, V. S.; Pendall, E.; Pineiro, J.; Powell, J. R.; Power, S. A.; Reich, P. B.; Renchon, A. A.; Riegler, M.; Rymer, P.; Salomon, R. L.; Singh, B. K.; Smith, B.; Tjoelker, M. G.; Walker, J. K. M.; Wujeska-Klause, A.;
10.1101/696898 — ecology — Posted on 2019-07-11
2370 Proliferation specific codon usage facilitates oncogene translation
Benisty, H.; Weber, M.; Hernandez-Alias, X.; Schaefer, M. H.; Serrano, L.
10.1101/695957 — cancer biology — Posted on 2019-07-11
2372 Updated phylogeny of Chikungunya virus reveals lineage-specific RNA architecture
de Bernardi Schneider, A.; Ochsenreiter, R.; Hostager, R.; Hofacker, I. L.; Janies, D.; Wolfinger, M. T.
10.1101/698522 — bioinformatics — Posted on 2019-07-11
2375 TMT-Opsins differentially modulate medaka brain function in a context-dependent fashion
Fontinha, B. M.; Zekoll, T.; Gallach, M.; Reithofer, F.; Barker, A. J.; Hofbauer, M.; Fischer, R.; von Haeseler, A.; Baier, H.; Tessmar-Raible, K.
10.1101/698480 — neuroscience — Posted on 2019-07-11
2378 Migratory divides coincide with species barriers across replicated avian hybrid zones above the Tibetan Plateau
Scordato, E. S. C.; Smith, C. C. S.; Semenov, G. A.; Liu, Y.; Wilkins, M. R.; Liang, W.; Rubtsov, A.; Sundev, G.; Koyama, K.; Turbek, S. P.; Wunder, M. B.; Stricker, C. A.; Safran, R. J.
10.1101/698597 — evolutionary biology — Posted on 2019-07-11
2380 Non-genetic intra-tumor heterogeneity is a major predictor of phenotypic heterogeneity and ongoing evolutionary dynamics in lung tumors
Sharma, A.; Merritt, E.; Cruz, A.; Jiang, C.; Sarkodie, H.; Zhou, Z.; Malhotra, J.; Riedlinger, G. M.; De, S.
10.1101/698845 — cancer biology — Posted on 2019-07-11
2382 Hierarchical chromatin organization detected by TADpole.
Soler-Vila, P.; Cusco Pons, P.; Farabella, I.; Di Stefano, M.; Marti-Renom, M.
10.1101/698720 — bioinformatics — Posted on 2019-07-11
2383 Metabolomic profiling reveals developmentally regulated biosynthesis of polyprenols and dolichols in the malaria parasite
Zimbres, F. M.; Valenciano, A. L.; Merino, E. F.; Holderman, N. R.; Florentin, A.; He, G.; Gawarecka, K.; Skorupinska-Tudek, K.; Fernandez-Murga, M. L.; Swiezewska, E.; Wang, X.; Muralidharan, V.; Cassera, M. B.
10.1101/698993 — biochemistry — Posted on 2019-07-11
2385 RNA processing machineries in Archaea: the 5’-3’ exoribonuclease aRNase J of the β-CASP family is engaged specifically with the helicase ASH-Ski2 and the 3’-5’ exoribonucleolytic RNA exosome machinery
Phung, D. K.; Etienne, C.; Batista, M.; Langendijk-Genevaux, P.; Moalic, Y.; Laurent, S.; Morales, V.; Jebbar, M.; Fichant, G.; Bouvier, M.; Flament, D.; Clouet-d'Orval, B.
10.1101/699629 — molecular biology — Posted on 2019-07-11
2388 Diverse, abundant and novel viruses infecting \"unculturable\" but abundant marine bacteria
Zhang, Z.; Chen, F.; Chu, X.; Zhang, H.; Luo, H.; Qin, F.; Zhai, Z.; Yang, M.; Sun, J.; Zhao, Y.
10.1101/699256 — microbiology — Posted on 2019-07-11
2389 Brucella effector hijacks endoplasmic reticulum quality control machinery to prevent premature egress
Luizet, J.-B.; Raymond, J.; Lacerda, T. L.; Bonici, M.; Lembo, F.; Willemart, K.; Borg, J.-P.; Gorvel, J.-P.; Salcedo, S. P.
10.1101/699330 — microbiology — Posted on 2019-07-11
2392 Hummingbird iridescence: an unsuspected structural diversity influences colouration at multiple scales
Gruson, H.; Elias, M.; Andraud, C.; Djediat, C.; Berthier, S.; Doutrelant, C.; Gomez, D.
10.1101/699744 — evolutionary biology — Posted on 2019-07-11
2394 Mast seeding promotes evolution of scatter-hoarding
Zwolak, R.; Clements, D.; Sih, A.; Schreiber, S.
10.1101/698761 — ecology — Posted on 2019-07-11
2395 Differential expansion microscopy
Pernal, S. P.; Liyanaarachchi, A.; Gatti, D. L.; Formosa, B.; Pulvender, R.; Kuhn, E. R.; Ramos, R.; Naik, A. R.; George, K.; Arslanturk, S.; Taatjes, D. J.; Jena, B. P.
10.1101/699579 — cell biology — Posted on 2019-07-11
2397 Mutational impact of chronic alcohol use on stem cells in cirrhotic liver
Jager, M.; Kuijk, E.; Lieshout, R.; Locati, M.; Besselink, N.; van der Roest, B.; Janssen, R.; Boymans, S.; de Jonge, J.; IJzermans, J.; Doukas, M.; Verstegen, M.; van Boxtel, R.; van der Laan, L.; Cuppen, E.
10.1101/698894 — cancer biology — Posted on 2019-07-11
2398 Guidelines for cell-type heterogeneity quantification based on a comparative analysis of reference-free DNA methylation deconvolution software
Decamps, C.; Prive, F.; Bacher, R.; Jost, D.; Waguet, A.; HADACA Consortiun, ; Houseman, E. A.; Lurie, E.; Lutsik, P.; Milosavljevic, A.; Scherer, M.; Blum, M.; Richard, M.
10.1101/698050 — bioinformatics — Posted on 2019-07-11
2399 A synthetic metabolic network for physicochemical homeostasis
Poolman, B.; Pols, T.; Sikkema, H. R.; Gaastra, B. F.; Frallicciardi, J.; Smigiel, W. M.; Singh, S.
10.1101/698498 — synthetic biology — Posted on 2019-07-11
2400 Resting-state network topology and planning ability in healthy adults
Vriend, C.; Wagenmakers, M.; van den Heuvel, O. A.; van der Werf, Y. D.
10.1101/696856 — neuroscience — Posted on 2019-07-11
2401 Changes in interictal pretreatment and posttreatment EEG in childhood absence epilepsy
Glaba, P.; Latka, M.; Krause, M.; Kurylo, M.; Jernajczyk, W.; Walas, W.; West, B. J.
10.1101/699868 — neuroscience — Posted on 2019-07-11
2404 Species-specific differences in the susceptibility of fungi towards the antifungal protein AFP depend on C3 saturation of glycosylceramides
Paege, N.; Warnecke, D.; Zaeuner, S.; Hagen, S.; Rodrigues, A.; Baumann, B.; Thiess, M.; Jung, S.; Meyer, V.
10.1101/698456 — microbiology — Posted on 2019-07-11
2405 Microbiota supplementation with Bifidobacterium and Lactobacillus modifies the preterm infant gut microbiota and metabolome
Alcon-Giner, C.; Dalby, M.; Caim, S.; Ketskemety, J.; Shaw, A.; Sim, K.; Lawson, M.; Kiu, R.; Leclaire, C.; Chalklen, L.; Kujawska, M.; Mitra, S.; Fardus-Reid, F.; Belteki, G.; Llyod, K.; Swann, J.; Kroll, S.; Clarke, P.; Hall, L. J.
10.1101/698092 — microbiology — Posted on 2019-07-11
2407 Snake deltavirus utilizes envelope proteins of different viruses to generate infectious particles
Szirovicza, L.; Hetzel, U.; Kipar, A.; Martinez-Sobrido, L.; Vapalahti, O.; Hepojoki, J.
10.1101/698514 — microbiology — Posted on 2019-07-11
2408 Multivariate phenotypic divergence along an urbanization gradient
Santangelo, J. S.; Advenard, C.; Rivkin, L. R.; Thompson, K. A.
10.1101/699017 — evolutionary biology — Posted on 2019-07-11
2410 The tumor immune response is not compromised by mesenchymal stromal cells in humanized mice
Moquin-Beaudry, G.; Colas, C.; Li, Y.; Bazin, R.; Guimond, J. V.; Haddad, E.; Beausejour, C.
10.1101/699751 — cell biology — Posted on 2019-07-11
2415 Compaction dynamics during progenitor cell self-assembly reveal granular mechanics
Smeets, B.; Pesek, J.; Deckers, T.; Nilsson Hall, G.; Cuvelier, M.; Ongenae, S.; Bloemen, V.; Luyten, F. P.; Papantoniou, I.; Ramon, H.
10.1101/699447 — biophysics — Posted on 2019-07-11
2417 Vasohibin1, a new IRES trans-acting factor for induction of (lymph)angiogenic factors in early hypoxia
Hantelys, F.; Godet, A.-C.; David, F.; Tatin, F.; Renaud-Gabardos, E.; Pujol, F.; Diallo, L.; Ader, I.; Ligat, L.; Henras, A.; Sato, Y.; Lacazette, E.; Parini, A.; Garmy-Susini, B.; Prats, A.-C.
10.1101/260364 — cell biology — Posted on 2019-07-11
2419 Identification of \"Missing Link\" Families of Small DNA Tumor Viruses
Welch, N. L.; Tisza, M. J.; Belford, A.; Pastrana, D. V.; Pang, Y.-Y. S.; Schiller, J. T.; An, P.; Cantalupo, P. G.; Pipas, J. M.; Koda, S.; Subrimaniam, K.; Waltzek, T. B.; Bian, C.; Shi, Q.; Ruan, Z.; Ng, T. F.; Starrett, G. J.; Buck, C. B.
10.1101/697771 — microbiology — Posted on 2019-07-11
2420 Finding and extending ancient simple sequence repeat-derived regions in the human genome
Shortt, J. A.; Ruggiero, R. P.; Cox, C.; Wacholder, A. C.; Pollock, D. D.
10.1101/697813 — genomics — Posted on 2019-07-11
2422 Gestational pertussis vaccination and the infants cellular immune response against whole-cell pertussis vaccine in the first year of life
Argondizo Correia, C.; Rehder de Andrade Vaz-de-Lima, L.; Uchima Uehara, E.; Gatti Fernandes, E.; Keico Sato, H.; Sayuri Sato, A. P.; Jose de Albuquerque Luna, E.; Ayres de Castilho, E.; Alves de Brito, C.
10.1101/697722 — immunology — Posted on 2019-07-11
2424 Inflammasome-mediated antagonism of type I interferon enhances Rickettsia pathogenesis
Burke, T. P.; Engström, P.; Chavez, R. A.; Fonbuena, J. A.; Vance, R. E.; Welch, M. D.
10.1101/697573 — immunology — Posted on 2019-07-11
2425 Patient-matched analysis identifies deregulated networks in prostate cancer to guide personalized therapeutic intervention
Kumar, A.; Badredine, A.; Azzag, K.; Kasikci, Y.; Ranty, M. L. Q.; Zaidi, F.; Serret, N.; Mazerolles, C.; Malavaud, B.; Mendoza-Parra, M. A.; Vandel, L.; Gronemeyer, H.
10.1101/695999 — genomics — Posted on 2019-07-11
2428 Systematic Description of 3q29 Duplication Syndrome Reveals New Syndromic Phenotypes: Results from the 3q29 Registry
Pollak, R. M.; Zinsmeister, M. C.; Murphy, M. M.; Zwick, M. E.; The Emory 3q29 Project, ; Mulle, J. G.
10.1101/697714 — genetics — Posted on 2019-07-11
2429 MicroRNA-378 suppressed osteogenesis of mesenchymal stem cells and impaired bone formation via inactivating Wnt/β-catenin signaling
Li, G.; Feng, L.; Zhang, J.; Shi, L.; Yang, Z.; Wu, T.; Wang, H.; Lin, W.; Lu, Y.; Lo, J. H. T.; Zhu, D.
10.1101/699355 — cell biology — Posted on 2019-07-11
2430 Alternative Splicing of MR1 regulates antigen presentation to MAIT cells
Narayanan, G. A.; Nellore, A.; Tran, J.; Worley, A. H.; Meermeier, E. W.; Karamooz, E.; Huber, M.; Kurapova, R.; Tafesse, F.; Harriff, M. J.; Lewinsohn, D. M.
10.1101/695296 — immunology — Posted on 2019-07-11
2431 Dynamic regulation of chromatin accessibility by pluripotency transcription factors across the cell cycle
Friman, E. T.; Deluz, C.; Meireles-Filho, A. C.; Govindan, S.; Gardeux, V.; Deplancke, B.; Suter, D. M.
10.1101/698571 — genomics — Posted on 2019-07-11
2435 The Molecular and Structural Asymmetry of the Plasma Membrane
Lorent, J. H.; Ganesan, L.; Longsworth, G.; Sezgin, E.; Levental, K. R.; Lyman, E.; Levental, I.
10.1101/698837 — cell biology — Posted on 2019-07-11
2436 A patatin-like phospholipase is crucial for gametocyte induction in the malaria parasite Plasmodium falciparum
Flammersfeld, A.; Panyot, A.; Yamaryo, Y.; Aurass, P.; Pryborski, J. M.; Flieger, A.; Botte, C.; Pradel, G.
10.1101/699363 — cell biology — Posted on 2019-07-11
2439 An oomycete effector impairs autophagy in evolutionary distant organisms and favors host infection
Testi, S.; Kuhn, M.-L.; Allasia, V.; Auroy, P.; Kong, F.; Peltier, G.; Pagnotta, S.; Cazareth, J.; Keller, H.; Panabieres, F.
10.1101/697136 — plant biology — Posted on 2019-07-11
2441 Coordination of tissue cell polarity by auxin transport and signaling
Verna, C.; Ravichandran, S. J.; Sawchuk, M. G.; Linh, N. M.; Scarpella, E.
10.1101/680090 — plant biology — Posted on 2019-07-11
2442 Physiological Basis of noise-induced hearing loss in a tympanal ear
Warren, B.; Fenton, G. E.; Klenschi, E.; Windmill, J. F.; French, A. S.
10.1101/698670 — neuroscience — Posted on 2019-07-11
2450 Using structural analysis in silico to assess the impact of missense variants in MEN1
Caswell, R. C.; Owens, M. M.; Gunning, A. C.; Ellard, S.; Wright, C. F.
10.1101/661512 — genetics — Posted on 2019-07-10
2451 Intraspecific diversity of fission yeast mitochondrial genomes
Tao, Y.-T.; Suo, F.; Tusso, S.; Wang, Y.-K.; Huang, S.; Wolf, J.; Du, L.-L.
10.1101/624742 — evolutionary biology — Posted on 2019-07-10
2453 High-throughput phenotyping reveals expansive genetic and structural underpinnings of immune variation
Abeler-Dörner, L.; Laing, A.; Lorenc, A.; Ushakov, D. S.; Clare, S.; Speak, A.; Duque Correa, M. A.; White, J. K.; Ramirez-Solis, R.; Saran, N.; Bull, K. R.; Moron, B.; Iwasaki, J.; Barton, P. R.; Caetano, S.; Hng, K. I.; Cambridge, E.; Forman, S.; Crockford, T. L.; Griffiths, M.; Kane, L.; Harcourt, K.; Brandt, C.; Notley, G.; Babalola, K. O.; Warren, J.; Mason, J. C.; Meeniga, A.; Karp, N. A.; Melvin, D.; Cawthorne, E.; Weinrick, B.; Rahim, A.; Drissler, S.; Meskas, J.; Yue, A.; Lux, M.; Song-Zhao, G.; Chan, A.; Ballesteros Reviriego, C.; Abeler, J.; Wilson, H.; Przemska-Kosicka, A.; Edmans
10.1101/688010 — immunology — Posted on 2019-07-10
2454 Model order reduction for left ventricular mechanics via congruency training
Di Achille, P.; Parikh, J.; Khamzin, S.; Solovyova, O.; Kozloski, J.; Gurev, V.
10.1101/694075 — biophysics — Posted on 2019-07-10
2455 Single-molecule localization of Nav1.5 reveals different modes of reorganization at cardiomyocyte domains
Vermij, S.; Rougier, J.-S.; Agullo-Pascual, E.; Rothenberg, E.; Delmar, M.; Abriel, H.
10.1101/674275 — physiology — Posted on 2019-07-10
2456 Localized delivery and uncaging of glutamate from MRI-visible albumin nanoclusters in the rat hippocampus using focused ultrasound
Rich, M. C.; Sherwood, J.; Bartley, A. F.; Willoughby, W. R.; Dobrunz, L. E.; Lubin, F. D.; Bao, Y.; Bolding, M.
10.1101/696237 — neuroscience — Posted on 2019-07-10
2457 High-resolution sweep metagenomics using fast probabilistic inference
Mäklin, T.; Kallonen, T.; David, S.; Boinett, C. J.; Pascoe, B.; Meric, G.; Aanensen, D. M.; Feil, E. J.; Baker, S.; Parkhill, J.; Sheppard, S. K.; Corander, J.; Honkela, A.
10.1101/332544 — bioinformatics — Posted on 2019-07-10
2460 Conserved DNA polymorphisms distinguish species in the eastern North American white oak syngameon: Insights from an 80-SNP oak DNA genotyping toolkit
Hipp, A. L.; Whittemore, A. T.; Garner, M.; Hahn, M.; Fitzek, E.; Guichoux, E.; Cavender-Bares, J.; Gugger, P. F.; Manos, P. S.; Pearse, I. S.; Cannon, C. H.
10.1101/602573 — evolutionary biology — Posted on 2019-07-10
2462 Mechanistic insights into bacterial metabolic reprogramming from omics-integrated genome-scale models
Hadadi, N.; Pandey, V.; Chiappino-Pepe, A.; Morales, M.; Gallart-Ayala, H.; Mehl, F.; Ivanisevic, J.; Sentchilo, V.; Meer, J. v. d.
10.1101/690164 — systems biology — Posted on 2019-07-10
2463 Cholinergic switch between two different types of slow waves in cerebral cortex
Nghiem, T.-A. E.; Tort-Colet, N.; Gorski, T.; Ferrari, U.; Moghimyfiroozabad, S.; Goldman, J. S.; Telenczuk, B.; Capone, C.; Bal, T.; di Volo, M.; Destexhe, A.
10.1101/430405 — neuroscience — Posted on 2019-07-10
2464 Evaluation of mitochondrial DNA copy number estimation techniques
Longchamps, R. J.; Castellani, C. A.; Newcomb, C. E.; Sumpter, J. A.; Lane, J.; Grove, M. L.; Guallar, E.; Pankratz, N.; Taylor, K. D.; Rotter, J. I.; Boerwinkle, E.; Arking, D.
10.1101/610238 — genetics — Posted on 2019-07-10
2466 Bioelectrical signaling via domain wall migration
McNamara, H. M.; Salegame, R.; Al Tanoury, Z.; Xu, H.; Begum, S.; Ortiz, G.; Pourquie, O.; Cohen, A. E.
10.1101/570440 — biophysics — Posted on 2019-07-10
2467 Srrm234, but not canonical SR and hnRNP proteins drive inclusion of Dscam exon 9 variable exons
Ustaoglu, P.; Haussmann, I.; Liao, H.; Torres-Mendez, A.; Arnold, R.; Irimia, M.; Soller, M.
10.1101/584003 — molecular biology — Posted on 2019-07-10
2468 An atlas of transcription factors expressed in the Drosophila melanogaster pupal terminalia
Vincent, B. J.; Rice, G. R.; Wong, G. M.; Glassford, W. J.; Downs, K. I.; Shastay, J. L.; Charles-Obi, K.; Natarajan, M.; Gogol, M. M.; Zeitlinger, J.; Rebeiz, M.
10.1101/677260 — genetics — Posted on 2019-07-10
2470 Predicting transfer RNA gene activity from genome variation data
Thornlow, B.; Armstrong, J.; Holmes, A.; Corbett-Detig, R.; Lowe, T. M.
10.1101/661942 — bioinformatics — Posted on 2019-07-10
2471 Intrinsic elasticity of nucleosomes is encoded by histone variants and calibrated by their binding partners
Melters, D. P.; Pitman, M.; Rakshit, T.; Dimitriadis, E. K.; Bui, M.; Papoian, G. A.; Dalal, Y.
10.1101/392787 — biochemistry — Posted on 2019-07-10
2472 The isotopic N turnover rate as a proxy to evaluate in the long-term the protein turnover in growing ruminants
Cantalapiedra-Hijar, G.; Fouillet, H.; Chantelauze, C.; Khodorova, N.; Bahloul, L.; Ortigues-Marty, I.
10.1101/543116 — physiology — Posted on 2019-07-10
2473 High-content assay for precision medicine discovery in cystic fibrosis.
Prins, S.; Langron, E.; Hastings, C.; Hill, E.; Stefan, A. C.; Griffin, L. D.; Vergani, P.
10.1101/631614 — pharmacology and toxicology — Posted on 2019-07-10
2474 Short-term effects of sound localization training in virtual reality
Steadman, M. A.; Kim, C.; Lestang, J.-H.; Goodman, D. F. M.; Picinali, L.
10.1101/207753 — neuroscience — Posted on 2019-07-10
2476 Comparison of biofilm dispersal approaches in Pseudomonas aeruginosa and evaluation of dispersed cells in acute infection mouse model
Ruhal, R.; De Winter, F.; de Jonger, B.; Xavier, B. B.; Lammens, C.; Goossens, H.; Kumar Singh, S.; Malhotra-Kumar, S.
10.1101/689646 — microbiology — Posted on 2019-07-10
2477 TCRex: detection of enriched T cell epitope specificity in full T cell receptor sequence repertoires
Gielis, S.; Moris, P.; Bittremieux, W.; De Neuter, N.; Ogunjimi, B.; Laukens, K.; Meysman, P.
10.1101/373472 — bioinformatics — Posted on 2019-07-10
2481 Genome-wide association study provides new insights into the genetic architecture and pathogenesis of heart failure
Shah, S.; Henry, A.; Roselli, C.; Lin, H.; Sveinbjörnsson, G.; Fatemifar, G.; Hedman, A. K.; Wilk, J. B.; Morley, M. P.; Chaffin, M. D.; Helgadottir, A.; Verweij, N.; Dehghan, A.; Almgren, P.; Anderson, C.; Aragam, K. G.; Ärnlöv, J.; Backman, J. D.; Biggs, M. L.; Bloom, H. L.; Brandimarto, J.; Broad AF Investigators, ; Brown, M. R.; Buckbinder, L.; Carey, D. J.; Regeneron Genetics Center, ; Chasman, D. I.; Chen, X.; Chen, X.; Chung, J.; Chutkow, W.; Cook, J. P.; Delgado, G. E.; Denaxas, S.; Doney, A. S.; Dörr, M.; Dudley, S. C.; Dunn, M. E.; EchoGen Consortium, ; Engström, G.; Esko, T.
10.1101/682013 — genetics — Posted on 2019-07-10
2485 Proteins required for vacuolar function are targets of lysine polyphosphorylation in yeast
McCarthy, L.; Bentley-DeSousa, A.; Denoncourt, A.; Tseng, Y.-C.; Gabriel, M.; Downey, M.
10.1101/697847 — molecular biology — Posted on 2019-07-10
2487 Generalized displacement of DNA- and RNA-binding factors mediates the toxicity of arginine-rich cell-penetrating peptides
Lafarga, V.; Sirozh, O.; Diaz-Lopez, I.; Hisaoka, M.; Zarzuela, E.; Boskovic, J.; Jovanovic, B.; Fernandez-Leiro, R.; Munoz, J.; Stoecklin, G.; Ventoso, I.; Fernandez-Capetillo, O.
10.1101/441808 — cell biology — Posted on 2019-07-10
2488 Scale free topology as an effective feedback system
Rivkind, A.; Schreier, H.; Brenner, N.; Barak, O.
10.1101/696575 — biophysics — Posted on 2019-07-10
2490 The mechanical basis for snapping of the Venus flytrap, Darwin’s ‘most wonderful plant in the world’
Burri, J. T.; Saikia, E.; Laeubli, N. F.; Vogler, H.; Wittel, F. K.; Rueggeberg, M.; Herrmann, H. J.; Burgert, I.; Nelson, B. J.; Grossniklaus, U.
10.1101/697797 — plant biology — Posted on 2019-07-10
2493 Emergence of consciousness and complexity amidst diffuse delta rhythms: the paradox of Angelman syndrome
Frohlich, J.; Bird, L. M.; DellItalia, J.; Johnson, M. A.; Hipp, J. F.; Monti, M. M.
10.1101/697862 — neuroscience — Posted on 2019-07-10
2494 Synaptic specificity is collectively determined by partner identity, location and activity
Valdes-Aleman, J.; Fetter, R. D.; Sales, E. C.; Doe, C. Q.; Landgraf, M.; Cardona, A.; Zlatic, M.
10.1101/697763 — neuroscience — Posted on 2019-07-10
2496 Astrocytic striatal GABA transporter activity governs dopamine release and shows maladaptive downregulation in early parkinsonism
Roberts, B. M.; Doig, N. M.; Brimblecombe, K. R.; Lopes, E. F.; Siddorn, R. E.; Threlfell, S.; Connor-Robson, N.; Bengoa-Vergniory, N.; Pasternack, N.; Wade-Martins, R.; Magill, P. J.; Cragg, S. J.
10.1101/698274 — neuroscience — Posted on 2019-07-10
2498 Factors affecting secondary sex characteristics in the yellowtail tetra Astyanax altiparanae
Siqueira-Silva, D. H.; Betolini, R. M.; Pereira, N. L.; Nascimento, N. F.; Senhorini, J. A.; Piva, L. H.; Ferraz, J. B. S.; Yasui, G. S.
10.1101/698100 — physiology — Posted on 2019-07-10
2499 High-content interrogation of human induced pluripotent stem cell-derived cortical organoid platforms.
Durens, M.; Nestor, J.; Herold, K.; Niescier, R. F.; Lunden, J. W.; Phillips, A. W.; Lin, Y.-C.; Nestor, M. W.
10.1101/697623 — neuroscience — Posted on 2019-07-10
2501 Pharmacological Characterisation of Novel Adenosine Receptor A3R Antagonists
Barkan, K.; Lagarias, P.; Vrontaki, E.; Stamatis, D.; Hoare, S.; Klotz, K.-N.; Kolocouris, A.; Ladds, G.
10.1101/693796 — pharmacology and toxicology — Posted on 2019-07-10
2504 Astaxanthin extends lifespan via altered biogenesis of the mitochondrial respiratory chain complex III
hoffman, r.; Sultan, L. D.; Saada, A.; Hirschberg, J.; Ostersetzer-Biran, O.; Gruenbaum, Y.
10.1101/698001 — developmental biology — Posted on 2019-07-10
2508 Cardiac valve regeneration in adult zebrafish: importance of TGF-β signaling in new tissue formation
Bensimon-Brito, A.; Ramkumar, S.; Boezio, G. L. M.; Guenther, S.; Kuenne, C.; Sanchez-Iranzo, H.; Iloska, D.; Piesker, J.; Pullamsetti, S.; Mercader, N.; Beis, D.; Stainier, D. Y. R.
10.1101/697706 — developmental biology — Posted on 2019-07-10
2509 Morphogenetic and patterning defects explain the coloboma phenotype of the eye in the Mexican cavefish
Devos, L.; KLEE, F.; Edouard, J.; Simon, V.; Legendre, L.; El Khallouki, N.; Blin, M.; Barbachou, S.; Sohm, F.; RETAUX, S.
10.1101/698035 — developmental biology — Posted on 2019-07-10
2510 iPSC-Derived Ovarian Tissue Restores Ovarian Function in Subfertile Mice After Gonadotoxic Chemotherapy
Elias, K. M.; Ng, N. W.; Dam, K. U.; Milne, A. B.; Disler, E. R.; Gockley, A.; Dunn, N.; Ginsburg, E. S.; Anchan, R. M.
10.1101/697532 — cell biology — Posted on 2019-07-10
2511 TRF1 prevents permissive DNA damage response, recombination and Break Induced Replication at telomeres
Vannier, J.-B.; Porreca, R. M.; Law, P. P.; Herrera-Moyano, E.; Gonzalez Franco, R.; Montoya, A.; Faull, P.; Kramer, H.
10.1101/697979 — cell biology — Posted on 2019-07-10
2512 TMEM70 is an assembly factor of mitochondrial complexes I and V
Sanchez-Caballero, L.; Elurbe, D. M.; Baertling, F.; Guerrero-Castillo, S.; van den Brand, M.; van Strien, J.; van Dam, T. J. P.; Rodenburg, R.; Brandt, U.; Huynen, M. A.; Nijtmans, L. G. J.
10.1101/697185 — cell biology — Posted on 2019-07-10
2513 Trisk95 as Novel Skin Mirror for Normal and Diabetic Systemic Glucose Level
Ali, N.; Reza-Rezvani, H.; Motei, D.; Suleman, S.; Mahfouf, W.; Marty, I.; Ronkainen, V.-P.; Vainio, S.
10.1101/688887 — cell biology — Posted on 2019-07-10
2517 Clonal transmission and new mechanism of resistance to trimethoprim-sulfamethoxazole in Stenotrophomonas maltophilia strains isolated in a neonatology unit at Antananarivo, Madagascar, deciphered by whole genome sequence analysis
Rabenandrasana, M. A. N.; Andrianoelina, V.; Bonneault, M.; Herindrainy, P.; Garin, B.; Breurec, S.; Delarocque-Astagneau, E.; Andrianirina, Z. Z.; Enouf, V.; Huynh, B.-T.; Opatowski, L.; Collard, J. M.
10.1101/696765 — microbiology — Posted on 2019-07-10
2518 Mapping Cumulative Impacts to Coastal Ecosystem Services in British Columbia
Singh, G. G.; Eddy, I.; Halpern, B.; Neslo, R.; Satterfield, T.; Chan, K.
10.1101/698365 — ecology — Posted on 2019-07-10
2519 Effect of pulsed light on postharvest disease control-related metabolomic variation in melon (Cucumis melo) artificially inoculated with Fusarium pallidoroseum
Filho, F. O.; Silva, E. d. O.; Lopes, M. M. d. A.; Ribeiro, P. R. V.; Oster, A. H.; Guedes, J. A. C.; Bordallo, P. d. N.; Zocolo, G. J.
10.1101/698407 — plant biology — Posted on 2019-07-10
2520 Klebsiella pneumoniae type VI secretion system-mediated microbial competition is PhoPQ controlled and reactive oxygen species dependent
Bengoechea, J. A.; Storey, D.; Mcnally, A.; Astrand, M.; sa-Pessoa Graca Santos, J.; Rodriguez-Escudero, I.; Elmore, B.; Palacios, L.; Marshall, H.; Hobley, L.; Molina, M.; Cid, V. J.; Salminen, T. A.
10.1101/698415 — microbiology — Posted on 2019-07-10
2521 Mozambican genetic variation provides new insights into the Bantu expansion
Semo, A.; Gaya-Vidal, M.; Fortes-Lima, C.; Alard, B.; Oliveira, S.; Almeida, J.; Prista, A.; Damasceno, A.; Fehn, A.-M.; Schlebusch, C.; Rocha, J.
10.1101/697474 — genetics — Posted on 2019-07-10
2523 Modelling vegetation understory cover using LiDAR metrics
Venier, L. A.; Swystun, T.; Mazerolle, M. J.; Kreutzweiser, D. P.; Wainio-Keizer, K. L.; McIlwrick, K. A.; Woods, M. E.; Wang, X.
10.1101/698399 — ecology — Posted on 2019-07-10
2527 Squamous differentiation portends poor prognosis in low and intermediate-risk endometrioid endometrial cancer.
Andrade, D. A. P. d.; da Silva, V. D.; Matsushita, G. d. M.; de Lima, M. A.; Vieira, M. d. A.; Andrade, C. E. M. C.; Schmidt, R. L.; Reis, R. M.; dos Reis, R.
10.1101/698316 — pathology — Posted on 2019-07-10
2528 An annotation dataset facilitates automatic annotation of whole-brain activity imaging of C. elegans
Toyoshima, Y.; Wu, S.; Kanamori, M.; Sato, H.; Jang, M. S.; Oe, S.; Murakami, Y.; Teramoto, T.; Park, C.; Iwasaki, Y.; Ishihara, T.; Yoshida, R.; Iino, Y.
10.1101/698241 — neuroscience — Posted on 2019-07-10
2538 Extended Bayesian inference incorporating symmetry bias
Shinohara, S.; Manome, N.; Suzuki, K.; Chung, U.-i.; Takahashi, T.; Gunji, Y.; Nakajima, Y.; Mitsuyoshi, S.
10.1101/698290 — animal behavior and cognition — Posted on 2019-07-10
2541 Codon-optimized TDP-43-mediated neurodegeneration in a Drosophila model for ALS/FTLD
Yusuff, T.; Chatterjee, S.; Chang, Y.-C.; Sang, T.-K.; Jackson, G. R.
10.1101/696963 — neuroscience — Posted on 2019-07-10
2555 Population genomics supports clonal reproduction and multiple gains and losses of parasitic abilities in the most devastating nematode plant pest
Koutsovoulos, G.; Marques, E.; Arguel, M.-J.; Duret, L.; Machado, A. C.; Carneiro, R. M.; Kozlowski, D. K.; Bailly-Bechet, M.; Castagnone-Sereno, P.; Albuquerque, E. V.; Danchin, E. G.
10.1101/362129 — evolutionary biology — Posted on 2019-07-09
2556 Vps34 PI 3-kinase controls thyroid hormone production by regulating thyroglobulin iodination, lysosomal proteolysis and tissue homeostasis
Grieco, G.; Wang, T.; Delcorte, O.; Janssens, V.; Spourquet, C.; Strickaert, A.; Gaide-Chevronnay, H.; Liao, X.-H.; Bilanges, B.; Refetoff, S.; Vanhaesebroeck, B.; Maenhaut, C.; Courtoy, P.; Pierreux, C.
10.1101/580142 — cell biology — Posted on 2019-07-09
2557 Hemispheric asymmetries in resting-state EEG and fMRI are related to approach and avoidance behaviour, but not to eating behaviour or BMI
Morys, F.; Janssen, L. K.; Cesnaite, E.; Beyer, F.; Garcia-Garcia, I.; Kube, J.; Kumral, D.; Liem, F.; Mehl, N.; Mahjoory, K.; Schrimpf, A.; Gaebler, M.; Margulies, D. S.; Villringer, A.; Neumann, J.; Nikulin, V.; Horstmann, A.
10.1101/692012 — neuroscience — Posted on 2019-07-09
2558 A unified role for membrane-cortex detachment during cell protrusion initiation
Welf, E. S.; Miles, C. E.; Huh, J.; Driscoll, M. K.; Isogai, T.; Noh, J.; Weems, A. D.; Chi, J.; Pohlkamp, T.; Dean, K.; Fiolka, R.; Mogilner, A.; Danuser, G.
10.1101/696211 — cell biology — Posted on 2019-07-09
2559 TGFβ blocks IFNα/β release and tumor rejection in spontaneous mammary tumors
Guerin, M. V. V.; Regnier, F.; Feuillet, V.; Vimeux, L.; Weiss, J. M.; Bismuth, G.; Altan-Bonnet, G.; Guilbert, T.; Thoreau, M.; Finisguerra, V.; Donnadieu, E.; Trautmann, A.; Bercovici, N.
10.1101/336990 — cancer biology — Posted on 2019-07-09
2560 Exponentially few RNA structures are designable
Yao, H.-T.; Chauve, C.; REGNIER, M.; Ponty, Y.
10.1101/652313 — bioinformatics — Posted on 2019-07-09
2563 H3K27me3-rich genomic regions can function as silencers to repress gene expression via chromatin interactions
Cai, Y.; Zhang, Y.; Loh, Y. P.; Tng, J. Q.; Lim, M. C.; Cao, Z.; Raju, A.; Li, S.; Manikandan, L.; Tergaonkar, V.; Tucker-Kellogg, G.; Fullwood, M. J.
10.1101/684712 — genomics — Posted on 2019-07-09
2571 Quantifying the contribution of sequence variants with regulatory and evolutionary significance to 34 bovine complex traits
Xiang, R.; Berg, I. V.; MacLeod, I.; Hayes, B.; Prowse-Wilkins, C.; Wang, M.; Bolormaa, S.; Liu, Z.; Rochfort, S.; Reich, C.; Mason, B.; Vander Jagt, C.; Daetwyler, H.; Lund, M.; Chamberlain, A.; Goddard, M.
10.1101/601658 — genomics — Posted on 2019-07-09
2572 Exploring the phylogeny of rosids with a five-locus supermatrix from GenBank
Sun, M.; Folk, R. A.; Gitzendanner, M. A.; Smith, S. A.; Germain-Aubrey, C.; Guralnick, R. P.; Soltis, P. S.; Soltis, D. E.; Chen, Z.
10.1101/694950 — evolutionary biology — Posted on 2019-07-09
2574 Stem-cell-ubiquitous genes spatiotemporally coordinate division through regulation of stem-cell-specific gene networks
Clark, N. M.; Buckner, E.; Fisher, A. P.; Nelson, E. C.; Nguyen, T. T.; Simmons, A. R.; de Luis Balaguer, M. A.; Butler-Smith, T.; Sheldon, P. J.; Bergmann, D. C.; Williams, C. M.; Sozzani, R.
10.1101/517250 — systems biology — Posted on 2019-07-09
2577 Large, three-generation CEPH families reveal post-zygotic mosaicism and variability in germline mutation accumulation
Sasani, T. A.; Pedersen, B. S.; Gao, Z.; Baird, L.; Przeworski, M.; Jorde, L. B.; Quinlan, A. R.
10.1101/552117 — genetics — Posted on 2019-07-09
2578 Extensive genetic differentiation between recently evolved sympatric Arctic charr morphs
Guđbrandsson, J.; Kapralova, K. H.; Franzdottir, S. R.; Bergsveinsdottir, T. M.; Hafstađ, V.; Jonsson, Z. O.; Snorrason, S. S.; Palsson, A.
10.1101/489104 — evolutionary biology — Posted on 2019-07-09
2584 Unique transcriptomic landscapes identified in idiopathic spontaneous and infection related preterm births compared to normal term births
Brockway, H. M.; Kallapur, S. G.; Buhimschi, I. A.; Buhimschi, C. S.; Ackerman, W. E.; Muglia, L. J.; Jones, H. N.
10.1101/386185 — developmental biology — Posted on 2019-07-09
2585 Bridging micro and macro: accurate registration of the BigBrain dataset with the MNI PD25 and ICBM152 atlases
Xiao, Y.; Lau, J. C.; Anderson, T.; DeKraker, J.; Collins, D. L.; Peters, T.; Khan, A. R.
10.1101/561118 — bioengineering — Posted on 2019-07-09
2590 Dose-dependent effects of transcranial alternating current stimulation on spike timing in awake nonhuman primates
Johnson, L.; Alekseichuk, I.; Krieg, J.; Doyle, A.; Yu, Y.; Vitek, J.; Johnson, M.; Opitz, A.
10.1101/696344 — neuroscience — Posted on 2019-07-09
2595 Perifornical Area Urocortin-3 Neurons Promote Infant-directed Neglect and Aggression
Autry, A. E.; Wu, Z.; Kohl, J.; Bambah-Mukku, D.; Rubinstein, N. D.; Marin-Rodriguez, B.; Carta, I.; Sedwick, V.; Dulac, C.
10.1101/697334 — neuroscience — Posted on 2019-07-09
2596 Classification of hospital and urban wastewater resistome and microbiota over time and their relationship to the eco-exposome.
Buelow, E.; Rico, A.; Gaschet, M.; Lourenco, J.; Kennedy, S. P.; Wiest, L.; Ploy, M.-C.; Dagot, C.
10.1101/697433 — microbiology — Posted on 2019-07-09
2597 Phytochromes measure photoperiod in Brachypodium
Gao, M.; Geng, F.; Klose, C.; Staudt, A.-M.; Huang, H.; Nguyen, D.; Lan, H.; Mockler, T. C.; Nusinow, D. A.; Hiltbrunner, A.; Schaefer, E.; Wigge, P. A.; Jaeger, K. E.
10.1101/697169 — plant biology — Posted on 2019-07-09
2599 G protein-coupled potassium channels implicated in mouse and cellular models of GNB1 Encephalopathy
Colombo, S.; Petri, S.; Shalomov, B.; Reddy, H. P.; Tabak, G.; Dhindsa, R. S.; Gelfman, S.; Teng, S.; Krizay, D.; Rafikian, E. E.; Bera, A. K.; Yang, M.; Boland, M. J.; Peng, Y.; Frankel, W. N.; Dascal, N.; Goldstein, D. B.
10.1101/697235 — neuroscience — Posted on 2019-07-09
2600 The costs of close contact: Visualizing the energy landscape of cell contacts at the nanoscale
Lippert, A.; Kulenkampff, K.; McColl, J.; Klenerman, D.; Santos, A. M.; Ponjavic, A.; Lee, S.; Davis, S. J.
10.1101/697672 — biophysics — Posted on 2019-07-09
2603 Single cell chromatin accessibility reveals pancreatic islet cell type- and state-specific regulatory programs of diabetes risk
Chiou, J.; Zeng, C.; Cheng, Z.; Han, J. Y.; Schlichting, M.; Huang, S.; Wang, J.; Sui, Y.; Deogaygay, A.; Okino, M.-L.; Qiu, Y.; Sun, Y.; Kudtarkar, P.; Fang, R.; Preissl, S.; Sander, M.; Gorkin, D.; Gaulton, K.
10.1101/693671 — genomics — Posted on 2019-07-09
2605 Development of a genetic toolset for the highly engineerable and metabolically versatile Acinetobacter baylyi ADP1
Biggs, B. W.; Bedore, S. R.; Arvay, E.; Huang, S.; Subramanian, H.; McIntyre, E. A.; Duscent-Maitland, C. V.; Neidle, E. L.; Tyo, K. E. J.
10.1101/696302 — synthetic biology — Posted on 2019-07-09
2606 A framework for spatial normalization and voxelwise analysis of diffusion propagators in multiple MAP-MRI data sets
Avram, A. V.; Bernstein, A. S.; Irfanoglu, M. O.; Weinkauf, C. C.; Cota, M.; Gai, N.; Simmons, A.; Moses, A.; Turtzo, L. C.; Jikaria, N.; Latour, L.; Pham, D.; Butman, J. A.; Basser, P. J.
10.1101/697284 — neuroscience — Posted on 2019-07-09
2607 Evidence for a deep, distributed and dynamic semantic code in human ventral anterior temporal cortex
Rogers, T. T.; Cox, C.; Lu, Q.; Shimotake, A.; Kikuch, T.; Kunieda, T.; Miyamoto, S.; Takahashi, R.; Ikeda, A.; Matsumoto, R.; Lambon Ralph, M. A.
10.1101/695049 — neuroscience — Posted on 2019-07-09
2609 Reconstructing temporal and spatial dynamics in single-cell experiments
Kuritz, K.; Stöhr, D.; Maichl, D.; Pollak, N.; Rehm, M.; Allgöwer, F.
10.1101/697151 — systems biology — Posted on 2019-07-09
2610 Long solids retention times and attached growth phase favor prevalence of comammox bacteria in nitrogen removal systems.
Cotto, I.; Dai, Z.; Huo, L.; Anderson, C. L.; Vilardi, K. J.; Ijaz, U. Z.; Khunjar, W.; Wilson, C.; De Clippeleir, H.; Gilmore, K.; Bailey, E.; Pinto, A.
10.1101/696351 — microbiology — Posted on 2019-07-09
2611 TGFβ restricts T cell function and bacterial control within the tuberculous granuloma
Gern, B.; Adams, K. N.; Plumlee, C. R.; Stoltzfus, C. R.; Shehata, L.; Busman-Sahay, K.; Hansen, S. G.; Axthelm, M. K.; Picker, L. J.; Estes, J. D.; Urdahl, K. B.; Gerner, M. Y.
10.1101/696534 — immunology — Posted on 2019-07-09
2612 Very rare pathogenic genetic variants detected by SNP-chips are usually false positives: implications for direct-to-consumer genetic testing
Weedon, M. N.; Jackson, L.; Harrison, J. W.; Ruth, K. S.; Tyrrell, J.; Hattersley, A. T.; Wright, C. F.
10.1101/696799 — genetics — Posted on 2019-07-09
2616 The Genome of the Zebra Mussel, Dreissena polymorpha: A Resource for Invasive Species Research
McCartney, M. A.; Auch, B.; Kono, T.; Mallez, S.; Zhang, Y.; Obille, A.; Becker, A.; Abrahante, J. E.; Garbe, J.; Badalamenti, J. P.; Herman, A.; Mangelson, H.; Liachko, I.; Sullivan, S.; Sone, E. D.; Koren, S.; Silverstein, K. A. T.; Beckman, K. B.; Gohl, D. M.
10.1101/696732 — genomics — Posted on 2019-07-09
2618 Increased expression of mitochondrial dysfunction stimulon genes affects chloroplast redox status and photosynthetic electron transfer in Arabidopsis
Shapiguzov, A.; Nikkanen, L.; Fitzpatrick, D.; Vainonen, J. P.; Tiwari, A.; Gossens, R.; Alseekh, S.; Aarabi, F.; Blokhina, O.; Panzarova, K.; Benedikty, Z.; Tyystjarvi, E.; Fernie, A. R.; Trtilek, M.; Aro, E.-M.; Rintamaki, E.; Kangasjarvi, J.
10.1101/696740 — plant biology — Posted on 2019-07-09
2619 A single cell framework for multi-omic analysis of disease identifies malignant regulatory signatures in mixed phenotype acute leukemia
Granja, J. M.; Klemm, S.; McGinnis, L. M.; Kathiria, A. S.; Mezger, A.; Parks, B.; Gars, E.; Liedtke, M.; Zheng, G. X.; Chang, H. Y.; Majeti, R.; Greenleaf, W. J.
10.1101/696328 — genomics — Posted on 2019-07-09
2620 The mechanistic basis for chromatin invasion and remodeling by the yeast pioneer transcription factor Rap1
Mivelaz, M.; Cao, A.-M.; Kubik, S.; Zencir, S.; Hovius, R.; Boichenko, I.; Stachowicz, A. M.; Kurat, C. F.; Shore, D.; Fierz, B.
10.1101/541284 — biophysics — Posted on 2019-07-09
2621 Genomic signature of shifts in selection in a sub-alpine ant and its physiological adaptations
Cicconardi, F.; Krapf, P.; D'Annessa, I.; Gamisch, A.; Wagner, H. C.; Nguyen, A. D.; Economo, E. P.; Mikheyev, A. S.; Guenard, B.; Grabherr, R.; Arthofer, W.; di Marino, D.; Steiner, F.; Schlick-Steiner, B. C.
10.1101/696948 — evolutionary biology — Posted on 2019-07-09
2623 How sensitive is functional connectivity to electrode resampling on intracranial EEG? Implications for personalized network models in drug-resistant epilepsy
Conrad, E. C.; Bernabei, J. M.; Kini, L. G.; Shah, P.; Mikhail, F.; Kheder, A.; Shinohara, R. T.; Davis, K. A.; Bassett, D. S.; Litt, B.
10.1101/696476 — bioengineering — Posted on 2019-07-09
2626 Intracranial recordings from human auditory cortex reveal a neural population selective for musical song
Norman-Haignere, S.; Feather, J.; Brunner, P.; Ritaccio, A.; McDermott, J. H.; Schalk, G.; Kanwisher, N.
10.1101/696161 — neuroscience — Posted on 2019-07-09
2627 Skewed distributions of LRS: beyond mean and variance
Tuljapurkar, S.; Zuo, W.; Coulson, T.; Horvitz, C.; Gaillard, J.-M.
10.1101/696500 — ecology — Posted on 2019-07-09
2632 Fast gamma oscillations weaken with age in healthy elderly in human EEG
Murty, D. V. P. S.; Ramesh, R. G.; Purokayastha, S.; Javali, M.; Rao, N. P.; Ray, S.
10.1101/696781 — neuroscience — Posted on 2019-07-09
2634 Widespread associations between grey matter structure and the human phenome
Couvy-Duchesne, B.; Strike, L. T.; Zhang, F.; Holtz, Y.; Zheng, Z.; Kemper, K. E.; Yengo, L.; Colliot, O.; Wright, M. J.; Wray, N. R.; Yang, J.; Visscher, P. M.
10.1101/696864 — neuroscience — Posted on 2019-07-09
2635 Massively parallel kinetic profiling of natural and engineered CRISPR nucleases
Jones, S. K.; Hawkins, J. A.; Johnson, N. V.; Jung, C.; Hu, K.; Rybarski, J. R.; Chen, J. S.; Doudna, J. A.; Press, W. H.; Finkelstein, I. J.
10.1101/696393 — molecular biology — Posted on 2019-07-09
2636 B-cell humoral response and differentiation is regulated by non-canonical poly(A) polymerase TENT5C
Bilska, A.; Kusio-Kobialka, M.; Krawczyk, P. S.; Gewartowska, O.; Tarkowski, B.; Kobylecki, K.; Gruchota, J.; Borsuk, E.; Dziembowski, A.; Mroczek, S.
10.1101/686683 — immunology — Posted on 2019-07-09
2637 Improving root characterisation for genomic prediction in cassava
Pino del Carpio, D.; Omar Yonis, B.; Wolfe, M. D.; Jannink, J.-L.; Kulakow, P.; Rabbi, I. Y.
10.1101/695494 — genomics — Posted on 2019-07-09
2640 ProTECT: Prediction of T-cell Epitopes for Cancer Therapy
Rao, A. A.; Madejska, A. A.; Pfeil, J.; Paten, B.; Salama, S.; Haussler, D.
10.1101/696526 — bioinformatics — Posted on 2019-07-09
2648 Targeted phosphoproteomics of the Ras signaling network reveal regulatory mechanisms mediated by oncogenic KRAS
Urisman, A.; Yuan, T. L.; Trinidad, M.; Morris, J. H.; Afghani, S.; Oses-Prieto, J. A.; Ritchie, C. D.; Zahari, M. S.; Benes, C. H.; Burlingame, A. L.; McCormick, F.
10.1101/695460 — cancer biology — Posted on 2019-07-09
2649 Partial absence of PD-1 expression by tumor-specific CD8+ T cells in EBV-driven lymphoepithelioma-like carcinoma: a case report
SIMONI, Y.; Becht, E.; Li, S.; LOH, C. Y.; YEONG, J. P. S.; LIM, T. K. H.; TAKANO, A.; TAN, D. S. W.; NEWELL, E. W.
10.1101/696278 — cancer biology — Posted on 2019-07-09
2650 Integrative proteomic and phosphoproteomic profiling of prostate cell lines
Katsogiannou, M.; Boyer, J. B.; Valdeolivas, A.; Remy, E.; Calzone, L.; Audebert, S.; Rocchi, P.; Camoin, L.; Baudot, A.
10.1101/696450 — bioinformatics — Posted on 2019-07-09
2652 Mapping Vector Field of Single Cells
Qiu, X.; Zhang, Y.; Yang, D.; Hosseinzadeh, S.; Wang, L.; Yuan, R.; Xu, S.; Ma, Y.; Replogle, J.; Darmanis, S.; Xing, J.; Weissman, J.
10.1101/696724 — systems biology — Posted on 2019-07-09
2653 Beta-driven closed-loop deep brain stimulation can compromise human motor behavior in Parkinson’s Disease
Iturrate, I.; Martin, S.; Chavarriaga, R.; Orset, B.; Leeb, R.; Solbolewski, A.; Pralong, E.; Castro-Jimenez, M.; Benninger, D.; Bloch, J.; Millan, J. d. R.
10.1101/696385 — neuroscience — Posted on 2019-07-09
2654 The language network is recruited but not required for non-verbal semantic processing
Ivanova, A. A.; Mineroff, Z.; Zimmerer, V.; Kanwisher, N.; Varley, R.; Fedorenko, E.
10.1101/696484 — neuroscience — Posted on 2019-07-09
2661 Recent evolutionary history of tigers highlights contrasting roles of genetic drift and selection
Armstrong, E.; Khan, A.; Taylor, R. W.; Gouy, A.; Greenbaum, G.; Thiery, A.; Kang, J. T.; Redondo, S. A.; Prost, S.; Barsh, G.; Kaelin, C.; Phalke, S.; Chugani, A.; Gilbert, M.; Miquelle, D.; Zachariah, A.; Borthakur, U.; Reddy, A.; Louis, E.; Ryder, O.; Jhala, Y.; Petrov, D.; Excoffier, L.; Hadly, E.; Ramakrishnan, U.
10.1101/696146 — genomics — Posted on 2019-07-09
2664 Periosteum-derived Osteocrin regulates bone growth through both endochondral ossification and intramembranous ossification
Watanabe-Takano, H.; Ochi, H.; Chiba, A.; Matsuo, A.; Kanai, Y.; Fukuhara, S.; Sako, K.; Miyazaki, T.; Sato, S.; Minamino, N.; Takeda, S.; Yasoda, A.; Mochizuki, N.
10.1101/697094 — developmental biology — Posted on 2019-07-09
2665 CD44 regulates epigenetic plasticity by mediating iron endocytosis
Muller, S.; Sindikubwabo, F.; Caneque, T.; Lafon, A.; Versini, A.; Lombard, B.; Loew, D.; Durand, A.; Valot, C.; Baulade, S.; Servant, N.; Rodriguez, R.
10.1101/693424 — cell biology — Posted on 2019-07-09
2667 Restructuring of amygdala subregion apportion across adolescence
Campbell, C. E.; Mezher, A. F.; Eckel, S. P.; Tyszka, J. M.; Pauli, W. M.; Nagel, B. J.; Herting, M. M.
10.1101/690875 — neuroscience — Posted on 2019-07-09
2668 A Pro-Diabetogenic mtDNA Polymorphism in the Mitochondrial-Derived Peptide, MOTS-c
Zempo, H.; Kim, S.-J.; Fuku, N.; Nishida, Y.; Higaki, Y.; Wan, J.; Yen, K.; Miller, B.; Vicinanza, R.; Miyamoto-Mikami, E.; Kumagai, H.; Naito, H.; Xiao, J.; Mehta, H. H.; Lee, C.; Hara, M.; Patel, Y. M.; Setiawan, V. W.; Moore, T. M.; Hevener, A. L.; Sutoh, Y.; Shimizu, A.; Kojima, K.; Kinoshita, K.; Tanaka, K.; Cohen, P.
10.1101/695585 — genetics — Posted on 2019-07-09
2672 New genotype invasion of dengue virus serotype 1 drove massive outbreak in Guangzhou, China
Jing, Q.; Wu, S.; He, Z.; Yuan, L.; Ma, M.; Bai, Z.; Jiang, L.; Marshall, J.; Lu, J.; Yang, Z.
10.1101/697052 — epidemiology — Posted on 2019-07-09
2676 The geography of the Anthropocene differs between the land and the sea
Bowler, D.; Bjorkmann, A.; Dornelas, M.; Myers-Smith, I.; Navarro, L.; Niamir, A.; Supp, S.; Waldock, C.; Vellend, M.; Blowes, S.; Boehning-Gaese, K.; Bruelheide, H.; Elahi, R.; Antao, L.; Hines, J.; Isbell, F.; Jones, H.; Magurran, A.; Cabral, J.; Winter, M.; Bates, A.
10.1101/432880 — ecology — Posted on 2019-07-09
2680 Calorie restriction intervention induces enterotype-associated BMI loss in nonobese individuals
Zou, H.; Wang, D.; Ren, H.; Fang, C.; Shi, Z.; Zhang, P.; Chen, P.; Wang, J.; Yang, H.; Cai, K.; Zhong, H.
10.1101/514596 — microbiology — Posted on 2019-07-09
2681 Hydrogenotrophic methanogens of the mammalian gut: functionally similar, thermodynamically different. A modelling approach
Munoz-Tamayo, R.; Popova, M.; Tillier, M.; Morgavi, D. P.; Morel, J.-P.; Fonty, G.; Morel-Desrosiers, N.
10.1101/445171 — microbiology — Posted on 2019-07-09
2683 USP7 as part of non-canonical PRC1.1 is a druggable target in leukemia
Maat, H.; Jaques, J.; Rodriguez Lopez, A.; Hogeling, S.; de Vries, M. P.; Gravesteijn, C.; Brouwers-Vos, A.; Huls, G.; Vellenga, E.; van den Boom, V.; Schuringa, J. J.
10.1101/221093 — cancer biology — Posted on 2019-07-09
2685 The mechanistic basis for chromatin invasion and remodeling by the yeast pioneer transcription factor Rap1
Mivelaz, M.; Cao, A.-M.; Kubik, S.; Zencir, S.; Hovius, R.; Boichenko, I.; Stachowicz, A. M.; Kurat, C. F.; Shore, D.; Fierz, B.
10.1101/541284 — biophysics — Posted on 2019-07-09
2686 Localized delivery and uncaging of glutamate from MRI-visible albumin nanoclusters in the rat hippocampus using focused ultrasound
Rich, M. C.; Sherwood, J.; Bartley, A. F.; Willoughby, W. R.; Dobrunz, L. E.; Lubin, F. D.; Bao, Y.; Bolding, M.
10.1101/696237 — neuroscience — Posted on 2019-07-09
2687 A unified role for membrane-cortex detachment during cell protrusion initiation
Welf, E. S.; Miles, C. E.; Huh, J.; Driscoll, M. K.; Isogai, T.; Noh, J.; Weems, A. D.; Chi, J.; Pohlkamp, T.; dean, k.; Fiolka, R.; Mogilner, A.; Danuser, G.
10.1101/696211 — cell biology — Posted on 2019-07-08
2688 Evaluation of direct grafting strategies in Expansion Microscopy
Wen, G.; Vanheusden, M.; Acke, A.; Vali, D.; Mayer, S. F.; Neely, R. K.; Leen, V.; Hofkens, J.
10.1101/696039 — biophysics — Posted on 2019-07-08
2691 Non-Canonical Regulation of Phosphatidylserine Metabolism by a Phosphatidylinositol Transfer Protein and a Phosphatidylinositol 4-OH Kinase
Wang, Y.; Yuan, P.; Tripathi, A.; Rodriguez, M.; Lonnfors, M.; Eisenberg-Bord, M.; Schuldiner, M.; Bankaitis, V.
10.1101/696336 — cell biology — Posted on 2019-07-08
2693 Homology-directed repair using next-generation CRISPR/Cpf1-geminiviral replicons in tomato
Vu, T. V.; Sivankalyani, V.; Kim, E.-J.; Tran, M. T.; Kim, J.; Sung, Y. W.; Doan, D. T. H.; Park, M.; Kim, J.-Y.
10.1101/521419 — molecular biology — Posted on 2019-07-08
2694 Pharmacological enrichment of polygenic risk for precision medicine in complex disorders
Reay, W. R.; Atkins, J. R.; Carr, V. J.; Green, M. J.; Cairns, M. J.
10.1101/655001 — genetics — Posted on 2019-07-08
2695 Loop-closure Kinetics Reveal a Stable, Right-handed DNA Intermediate in Cre Recombination
Shoura, M. J.; Giovan, S. M.; Vetcher, A. V.; Ziraldo, R.; Hanke, A.; Levene, S. D.
10.1101/695130 — biophysics — Posted on 2019-07-08
2699 The expanded BXD family of mice: A cohort for experimental systems genetics and precision medicine
Ashbrook, D. G.; Arends, D.; Prins, P.; Mulligan, M. K.; Roy, S.; Williams, E. G.; Lutz, C. M.; Valenzuela, A.; Bohl, C. J.; Ingels, J. F.; McCarty, M.; Centeno, A.; Hager, R.; Auwerx, J.; Sen, S.; Lu, L.; Williams, R. W.
10.1101/672097 — genomics — Posted on 2019-07-08
2700 Dynamics of Meiotic Sex Chromosome Inactivation and Pachytene Activation in Mice Spermatogenesis
Vertesy, A.; Frias-Aldeguer, J.; Sahin, Z.; Rivron, N.; van Oudenaarden, A.; Geijsen, N.
10.1101/665372 — genomics — Posted on 2019-07-08
2701 Pan-GWAS of Streptococcus agalactiae highlights lineage-specific genes associated with virulence and niche adaptation
Gori, A.; Harrison, O.; Mlia, E.; Nishihara, Y.; Chinkwita-Phiri, J.; Mallewa, M.; Dube, Q.; Swarthout, T. D.; Nobbs, A. H.; Maiden, M.; French, N.; Heyderman, R. S.
10.1101/574152 — genomics — Posted on 2019-07-08
2702 Genome-wide scan identifies novel genetic loci regulating salivary metabolite levels
Nag, A.; Kurushima, Y.; Bowyer, R. C. E.; Wells, P. M.; Weiss, S.; Pietzner, M.; Kocher, T.; Raffler, J.; Volker, U.; Mangino, M.; Spector, T.; Milburn, M. V.; Kastenmuller, G.; Mohney, R. P.; Suhre, K.; Menni, C.; Steves, C. J.
10.1101/687350 — genetics — Posted on 2019-07-08
2703 Synthetic Genetic Codes Designed to Hinder Evolution
Calles, J.; Justice, I.; Brinkley, D.; Garcia, A.; Endy, D.
10.1101/695569 — synthetic biology — Posted on 2019-07-08
2706 Leveraging eQTLs to identify individual-level tissue of interest for a complex trait
Majumdar, A.; Giambartolomei, C.; Cai, N.; Kumar Freund, M.; Haldar, T.; Schwarz, T.; Flint, J.; Pasaniuc, B.
10.1101/674226 — genetics — Posted on 2019-07-08
2708 Polylactic acid, a sustainable, biocompatible, transparent substrate material for Organ-On-Chip and Microfluidic applications
Ongaro, A. E.; Di Giuseppe, D.; Kermanizadeh, A.; Miguelez Crespo, A.; Mancini, V.; Mencatti, A.; Ghibelli, L.; Wlodarczyk, K. L.; Hand, D. P.; Martinelli, E.; Stone, V.; Howarth, N.; La Carrubba, V.; Pensabene, V.; Kersaudy-Kerhoas, M.
10.1101/647347 — bioengineering — Posted on 2019-07-08
2709 Reactivated spatial context guides episodic recall
Herweg, N. A.; Sharan, A. D.; Sperling, M. R.; Brandt, A.; Schulze-Bonhage, A.; Kahana, M. J.
10.1101/399972 — neuroscience — Posted on 2019-07-08
2714 Dynamic changes in the brain protein interaction network correlates with progression of Aβ42 pathology in Drosophila
Scholes, H. M.; Cryar, A.; Kerr, F.; Sutherland, D.; Gethings, L. A.; Vissers, J. P. C.; Lees, J. G.; Orengo, C. A.; Partridge, L.; Thalassinos, K.
10.1101/501213 — biochemistry — Posted on 2019-07-08
2717 Widespread methane formation by Cyanobacteria in aquatic and terrestrial ecosystems
Bizic, M.; Klintzch, T.; Ionescu, D.; Hindiyeh, M. Y.; Guenthel, M.; Muro Pastor, A. M.; Eckert, W.; Keppler, F.; Grossart, H.-P.
10.1101/398958 — microbiology — Posted on 2019-07-08
2718 Within-host dynamics of virulent viruses in bat reservoirs for emerging zoonotic disease
Brook, C. E.; Boots, M.; Chandran, K.; Dobson, A. P.; Drosten, C.; Graham, A. L.; Grenfell, B.; Müller, M. A.; Ng, M.; Wang, L.-F.; van Leeuwen, A.
10.1101/696195 — ecology — Posted on 2019-07-08
2719 Interaction of a sarcolipin pentamer and monomer with the sarcoplasmic reticulum calcium pump, SERCA
Glaves, J. P.; Primeau, J.; Gorski, P.; Espinoza-Fonseca, L. M.; Lemieux, J.; Young, H. S.
10.1101/696070 — biophysics — Posted on 2019-07-08
2722 How heterogeneity in glucokinase and gap junction coupling determines the islet electrical response
Dwulet, J. M.; Ludin, N.; Piscopio, R. A.; Schleicher, W. E.; Moua, O.; Westacott, M.; Benninger, R. K.
10.1101/696096 — biophysics — Posted on 2019-07-08
2724 Hair-bearing human skin generated entirely from pluripotent stem cells
Lee, J.; Rabbani, C.; Gao, H.; Steinhart, M.; Woodruff, B. W.; Pflum, Z.; Kim, A.; Heller, S.; Liu, Y.; Shipchandler, T. Z.; Koehler, K. R.
10.1101/684282 — developmental biology — Posted on 2019-07-08
2730 Unravelling native plant resistomes - The Sphagnum microbiome harbours versatile and novel antimicrobial resistance genes
Obermeier, M.-M.; Taffner, J.; Bergna, A.; Poehlein, A.; Cernava, T.; Müller, C. A.; Berg, G.
10.1101/695973 — microbiology — Posted on 2019-07-08
2731 Defining Monocyte Differentiation into Colonic and Ileal Macrophages
Gross-Vered, M.; Shemer, A.; Bernshtein, B.; Curato, C.; Trzebanski, S.; Salame, T.-M.; David, E.; Boura-Halfon, S.; Chappell-Maor, L.; Jung, S.
10.1101/695262 — immunology — Posted on 2019-07-08
2732 Dendritic NMDA receptors in parvalbumin neurons enable strong and stable neuronal assemblies
Cornford, J. H.; Mercier, M. S.; Leite, M.; Magloire, V.; Häusser, M.; Kullmann, D. M.
10.1101/279505 — neuroscience — Posted on 2019-07-08
2733 A Public Database on Traumatic Brachial Plexus Injury
Patroclo, C. B.; Ramalho, B. L.; Maia, J.; Rangel, M. L.; Torres, F.; Souza, L.; Braghetto, K. R.; Vargas, C. D.
10.1101/399824 — neuroscience — Posted on 2019-07-08
2735 Eye position signals in the dorsal pulvinar during fixation and goal-directed saccades
Schneider, L.; Dominguez Vargas, A. U.; Gibson, L.; Kagan, I.; Wilke, M.
10.1101/681130 — neuroscience — Posted on 2019-07-08
2738 Targeted cancer cell killing by highly selective miRNA-triggered activation of a prokaryotic toxin-antitoxin system
Turnbull, A.; Bermejo-Rodriguez, C.; Preston, M. A.; Garrido-Barros, M.; Pimentel, B.; de la Cueva-Mendez, G.
10.1101/695114 — synthetic biology — Posted on 2019-07-08
2739 Macroecological dynamics of gut microbiota
Ji, B. W.; Sheth, R. U.; Dixit, P. D.; Tchourine, K.; Vitkup, D.
10.1101/370676 — microbiology — Posted on 2019-07-08
2740 Nanopore base-calling from a perspective of instance segmentation
Zhang, Y.-z.; Akdemir, A.; Tremmel, G.; Imoto, S.; Miyano, S.; Shibuya, T.; Yamaguchi, R.
10.1101/694919 — bioinformatics — Posted on 2019-07-08
2742 Expression of extracellular multiheme cytochromes discovered in a betaproteobacterium during Mn(III) reduction
Szeinbaum, N.; Nunn, B. L.; Cavazos, A. R.; Crowe, S. A.; Stewart, F. J.; DiChristina, T. J.; Reinhard, C. T.; Glass, J. B.
10.1101/695007 — microbiology — Posted on 2019-07-08
2744 Structural determinants of protocadherin-15 elasticity and function in inner-ear mechanotransduction
Choudhary, D.; Narui, Y.; Neel, B. L.; Wimalasena, L. N.; Klanseck, C. F.; De-la-Torre, P.; Chen, C.; Araya-Secchi, R.; Tamilselvan, E.; Sotomayor, M.
10.1101/695502 — biophysics — Posted on 2019-07-08
2745 Unlocking the potential of historical abundance datasets to study biomass change in flying insects
Kinsella, R. S.; Thomas, C. D.; Crawford, T. J.; Hill, J. K.; Mayhew, P. J.; Macgregor, C. J.
10.1101/695635 — ecology — Posted on 2019-07-08
2747 Measuring the host-seeking ability of Aedes aegypti destined for field release
Lau, M.-J.; Endersby-Harshman, N. M.; Axford, J. K.; Ritchie, S. A.; Hoffmann, A. A.; Ross, P. A.
10.1101/695528 — animal behavior and cognition — Posted on 2019-07-08
2749 Vaccine antigen, Factor H binding protein, is typically a non-lipidated precursor that localises to the meningococcal surface by Slam.
Anderson Goncalves da Silva, R.; Karlyshev, A. V.; Oldfield, N. J.; Wooldridge, K. G.; Bayliss, C. D.; Ryan, A.; Griffin, R.
10.1101/693374 — microbiology — Posted on 2019-07-08
2754 Heavy chain-1 of inter-α-inhibitor has an integrin-like structure with immune regulatory activities
Briggs, D. J.; Langford-Smith, A. W. W.; Jowitt, T. A.; Kielty, C. M.; Enghild, J. J.; Baldock, C.; Milner, C. M.; Day, A. J.
10.1101/695700 — biochemistry — Posted on 2019-07-08
2755 Exploring the Dynamics of Nonlinear Biochemical Systems using Control-Based Continuation
Gomes, B.; de Cesare, I.; Guarino, A.; di Bernardo, M.; Renson, L.; Marucci, L.
10.1101/695866 — systems biology — Posted on 2019-07-08
2757 Exploring the phylogeny of rosids with a five-locus supermatrix from GenBank
Sun, M.; Folk, R. A.; Gitzendanner, M. A.; Smith, S. A.; Germain-Aubrey, C.; Guralnick, R. P.; Soltis, P. S.; Soltis, D. E.; Chen, Z.
10.1101/694950 — evolutionary biology — Posted on 2019-07-08
2758 Lek-associated movement of a putative Ebolavirus reservoir, the Hammer-headed fruit bat (Hypsignathus monstrosus), in northern Republic of Congo
Olson, S. H.; Bounga, G.; Ondzie, A.; Bushmaker, T.; Seifert, S. N.; Kuisma, E.; Taylor, D. W.; Munster, V. J.; Walzer, C.
10.1101/694687 — ecology — Posted on 2019-07-08
2760 Antinociceptive and Antioxidant Activities of Methanolic Extract of Leaves of Azadirachta Indica (Neem).
Mali, A.; Thorat, M.; Ghadage, D. M.; Sawant, S.; Shaikh, F.; Vhatkar, N.; Shinde, S.; Ghongde, K.; Tamboli, M.; Nikam, K.
10.1101/694505 — pharmacology and toxicology — Posted on 2019-07-08
2762 A Systems Immunology Approach Identifies Cytokine-Induced STAT Signaling Pathways Critical to Rheumatoid Arthritis Disease Activity and Treatment Response
Bridges, S. L.; Ptacek, J.; Hawtin, R. E.; Sun, D.; Louie, B.; Evensen, E.; Mittleman, B.; Cesano, A.; Cavet, G.; Bingham, C. O.; Cofield, S. S.; Curtis, J. R.; Danila, M. I.; Raman, C.; Furie, R.; Genovese, M. C.; Robinson, W. H.; Levesque, M. C.; Moreland, L. W.; Nigrovic, P. A.; Shadick, N. A.; O'Dell, J. R.; Thiele, G. M.; Clair, E. W. S.; Striebich, C. C.; Hale, M. B.; Khalili, H.; Batliwalla, F.; Aranow, C.; Mackay, M.; Diamond, B.; Nolan, G. P.; Gregersen, P. K.
10.1101/691865 — immunology — Posted on 2019-07-08
2764 Population genetics of the highly polymorphic RPP8 gene family
MacQueen, A. H.; Tian, D.; Chang, W.; Holub, E.; Kreitman, M.; Bergelson, J.
10.1101/694240 — evolutionary biology — Posted on 2019-07-08
2769 Synthetic Genetic Codes Designed to Hinder Evolution
Calles, J.; Justice, I.; Brinkley, D.; Garcia, A.; Endy, D.
10.1101/695569 — synthetic biology — Posted on 2019-07-08
2770 Homeoprotein neuroprotection of embryonic neuronal cells.
Vargas Abonce, S. E.; Leboeuf, M.; Prochiantz, A.; Moya, K. L.
10.1101/695684 — neuroscience — Posted on 2019-07-08
2771 A comprehensive dataset of TLX1 positive ALL-SIL lymphoblasts and primary T-cell acute lymphoblastic leukemias
Verboom, K.; Van Loocke, W.; Clappier, E.; Soulier, J.; Vandesompele, J.; Speleman, F.; Durinck, K.
10.1101/695668 — molecular biology — Posted on 2019-07-08
2775 STARRPeaker: Uniform processing and accurate identification of whole human STARR-seq active regions
Lee, D.; Shi, M.; Moran, J.; Wall, M.; Zhang, J.; Liu, J.; Fitzgerald, D.; Kyono, Y.; Ma, L.; White, K. P.; Gerstein, M.
10.1101/694869 — bioinformatics — Posted on 2019-07-08
2778 Ultra High-Throughput Multiparametric Imaging Flow Cytometry: Towards Diffraction-Limited Sub-Cellular Detection
Holzner, G.; Mateescu, B.; van Leeuwen, D.; Cereghetti, G.; Dechant, R.; deMello, A.; Stavrakis, S.
10.1101/695361 — bioengineering — Posted on 2019-07-08
2780 Bacterial fucosidase enables the production of Bombay red blood cells
Li, T.; Ye, J.; Wang, L.; Zou, L.; Guo, Y.; Hou, L.; Shen, D.; Cai, X.; Huang, H.; Sun, G.; Chen, L.
10.1101/695213 — molecular biology — Posted on 2019-07-08
2781 Soil bacterial populations are shaped by recombination and gene-specific selection across a meadow
Crits-Christoph, A.; Olm, M.; Diamond, S.; Bouma-Gregson, K.; Banfield, J. F.
10.1101/695478 — microbiology — Posted on 2019-07-08
2784 Genetic analysis of the STIM1 gene in chronic pancreatitis
Masson, E.; Zou, W.-B.; Ruffert, C.; Holste, V.; Michl, P.; Mossner, J.; Ewers, M.; Laumen, H.; Wu, H.; Zhou, D.-Z.; Li, Z.-S.; Yu, D.; Boulling, A.; Le Marechal, C.; Cooper, D. N.; Chen, J.-M.; Witt, H.; Rosendahl, J.; Liao, Z.; Ferec, C.
10.1101/691899 — genetics — Posted on 2019-07-08
2789 Individual Variation in Control Network Topography Supports Executive Function in Youth
Cui, Z.; Li, H.; Xia, C. H.; Larsen, B.; Adebimpe, A.; Baum, G. L.; Cieslak, M.; Gur, R. E.; Gur, R. C.; Moore, T. M.; Oathes, D. J.; Alexander-Bloch, A. F.; Raznahan, A.; Roalf, D. R.; Shinohara, R. T.; Wolf, D. H.; Davatzikos, C.; Bassett, D. S.; Fair, D. A.; Fan, Y.; Satterthwaite, T. D.
10.1101/694489 — neuroscience — Posted on 2019-07-08
2790 Development and validation of a novel oral oxycodone self-administration protocol for female and male rats
Zanni, G.; Featherstone, B. S.; DeSalle, M. J.; Deutsch, H. M.; Barr, G. A.; Eisch, A. J.
10.1101/690735 — neuroscience — Posted on 2019-07-08
2792 Non-canonical localization of RubisCO under high light conditions in the toxic cyanobacterium Microcystis aeruginosa PCC7806
Barchewitz, T.; Guljamow, A.; Meissner, S.; Timm, S.; Henneberg, M.; Baumann, O.; Hagemann, M.; Dittmann, E.
10.1101/695841 — microbiology — Posted on 2019-07-08
2793 Zika virus infection in Collaborative Cross mice
Mattocks, M. D.; Plante, K. S.; Fritch, E. J.; Baric, R. S.; Ferris, M. T.; Heise, M. T.; Lazear, H. M.
10.1101/695510 — microbiology — Posted on 2019-07-08
2794 Benchmarking predictions of MHC class I restricted T cell epitopes
Paul, S.; Croft, N. P.; Purcell, A. W.; Tscharke, D. C.; Sette, A.; Nielsen, M.; Peters, B.
10.1101/694539 — immunology — Posted on 2019-07-08
2795 ORP5 REGULATES TRANSPORT OF LIPIDS AND CALCIUM TO MITOCHONDRIA AT ENDOPLASMIC RETICULUM-MITOCHONDRIA MEMBRANE CONTACT SITES
Rochin, L.; Sauvanet, C.; Jaaskelainen, E.; Houcine, A.; Kivela, A.; Ma, X.; Marien, E.; Dehairs, J.; Neveu, J.; Le Bars, R.; Swinnen, J.; Bernard, D.; Tareste, D.; Olkkonen, V.; Giordano, F.
10.1101/695577 — cell biology — Posted on 2019-07-08
2796 Analysis of task-based functional MRI data preprocessed with fMRIPrep
Esteban, O.; Ciric, R.; Finc, K.; Blair, R. W.; Markiewicz, C. J.; Moodie, C. A.; Kent, J. D.; Goncalves, M.; DuPre, E.; Gomez, D. E.; Ye, Z.; Salo, T.; Valabregue, R.; Amlien, I. K.; Liem, F.; Jacoby, N.; Stojic, H.; Cieslak, M.; Urchs, S.; Halchenko, Y. O.; Ghosh, S. S.; de la Vega, A.; Yarkoni, T.; Wright, J. A.; Thompson, W. H.; Poldrack, R. A.; Gorgolewski, K. J.
10.1101/694364 — bioinformatics — Posted on 2019-07-08
2797 Non-sedating benzodiazepines cause contractile paralysis and tissue damage in the parasitic blood fluke Schistosoma mansoni
McCusker, P.; Mian, Y.; Li, G.; Olp, M. D.; Tiruveedhula, V. V. N. P. B.; Rashid, F.; Golani, L. K.; Smith, B. C.; Cook, J. M.; Chan, J. D.
10.1101/694588 — pharmacology and toxicology — Posted on 2019-07-08
2800 Systems-level immunomonitoring using self-sampled capillary blood
Josyula, V. S.; Lakshmikanth, T.; Mikes, J.; Chen, Y.; Brodin, P.
10.1101/694521 — immunology — Posted on 2019-07-08
2802 Transcriptome assembly from long-read RNA-seq alignments with StringTie2
Kovaka, S.; Zimin, A. V.; Pertea, G. M.; Razaghi, R.; Salzberg, S. L.; Pertea, M.
10.1101/694554 — genomics — Posted on 2019-07-08
2806 Structural basis for recognition of RALF peptides by LRX proteins during pollen tube growth
Moussu, S.; Broyart, C.; Santos-Fernandez, G.; Augustin, S.; Wehrle, S.; Grossniklaus, U.; Santiago, J.
10.1101/695874 — plant biology — Posted on 2019-07-08
2807 Dynamic brain network changes reflect neuroplasticity: molecular and cognitive evidence
Liu, Z.; Xiao, X.; Zhang, K.; Zhao, Q.; Cao, X.; Li, C.; Wang, M.; Robbins, T. W.; Sahakian, B. J.; Zhang, J.; Feng, J.
10.1101/695122 — neuroscience — Posted on 2019-07-08
2812 FxR-modulates the gut-vascular barrier by regulating the entry sites for bacterial translocation in experimental cirrhosis
Sorribas, M.; Jakob, M.; Yilmaz, B.; Li, H.; Stutz, D.; Noser, Y.; De Gottardi, A.; Moghadamrad, S.; Hassan, M.; Albillos, A.; Frances, R.; Juanola, O.; Spadoni, I.; Rescigno, M.; Wiest, R.
10.1101/690057 — physiology — Posted on 2019-07-08
2813 Localization of a feline autosomal dominant dwarfism locus: a novel model of chondrodysplasia
Lyons, L. A.; Fox, D. B.; Chesney, K. L.; Britt, L. G.; Buckley, R. M.; Coates, J. R.; Gandolfi, B.; Grahn, R. A.; Hamilton, M. J.; Middleton, J. R.; Sellers, S. T.; Villani, N. A.; 99 Lives Consortium,
10.1101/687210 — genetics — Posted on 2019-07-08
2816 PheGWAS: A new dimension to visualize GWAS across multiple phenotypes
George, G.; Gan, S.; Appleby, P.; Nar, A.; Huang, Y.; Doney, A. S. F.; on behalf of the INSPIRED collaboration,
10.1101/694794 — bioinformatics — Posted on 2019-07-08
2817 First detection of Infectious Spleen and kidney Necrosis Virus (ISKNV) associated with massive mortalities in farmed tilapia in Africa
Ramires, G.; Paley, R. K.; Hunt, W.; Feist, S. W.; Stone, D. M.; Field, T.; Hayden, D.; Ziddah, P. A.; Duodu, S.; Wallis, T.; Verner-Jeffreys, D.
10.1101/680538 — microbiology — Posted on 2019-07-08
2818 Coding and regulatory drivers of mantle cell lymphoma identified through exome and genome sequencing
Pararajalingam, P.; Coyle, K. M.; Arthur, S. E.; Thomas, N.; Alcaide, M.; Meissner, B.; Boyle, M.; Grande, B. M.; Slack, G.; Mungall, A. J.; Gascoyne, R. D.; Steidl, C.; Connors, J.; Villa, D.; Marra, M. A.; Johnson, N.; Scott, D. W.; Morin, R.
10.1101/686956 — genomics — Posted on 2019-07-08
2825 Recombinant rotaviruses rescued by reverse genetics reveal the role of NSP5 hyperphosphorylation in the assembly of viral factories
Papa, G.; Venditti, L.; Arnoldi, F.; Schraner, E. M.; Potgieter, C.; Borodavka, A.; Eichwald, C.; Burrone, O. R.
10.1101/660217 — microbiology — Posted on 2019-07-08
2829 Recounting the FANTOM Cage Associated Transcriptome
Imada, E. L.; Sanchez, D. F.; Collado-Torres, L.; Wilks, C.; Matam, T.; Dinalankara, W.; Stupnikov, A.; Pereira Lobo, F. P.; Yip, C.-W.; Yasuzawa, K.; Kondo, N.; Itoh, M.; Suzuki, H.; Kasukawa, T.; Hon, C. C.; de Hoon, M. J.; Shin, J. W.; Carninci, P.; Jaffe, A. E.; Leek, J. T.; Favorov, A.; Franco, G. R.; Langmead, B.; Marchionni, L.
10.1101/659490 — genomics — Posted on 2019-07-08
2831 Spatiotemporal Variability in Dengue Transmission Intensity in Jakarta, Indonesia
O'Driscoll, M.; Imai, N.; Ferguson, N. M.; Rezeki Hadinegoro, S.; Satari, H.; Tam, C. C.; Dorigatti, I.
10.1101/496448 — epidemiology — Posted on 2019-07-08
2836 Explicit strategies in force field adaptation
Schween, R.; McDougle, S. D.; Hegele, M.; Taylor, J. A.
10.1101/694430 — neuroscience — Posted on 2019-07-07
2838 Development of a PC12 cell-based assay for in vitro screening of catechol-O-methyltransferase inhibitors
Zhang, G.; Buchler, I. P.; DePasquale, M.; Wormald, M.; Liao, G.; Wei, H.; Barrow, J. C.; Carr, G. V.
10.1101/694596 — neuroscience — Posted on 2019-07-07
2841 Maintenance of cell type-specific connectivity and circuit function requires Tao kinase
Tenedini, F. M.; Saez Gonzalez, M.; Hu, C.; Pedersen, L. H.; Petruzzi, M. M.; Spitzweck, B.; Wang, D.; Richter, M.; Petersen, M.; Szpotowicz, E.; Schweizer, M.; Sigrist, S.; Calderon de Anda, F.; Soba, P.
10.1101/694265 — neuroscience — Posted on 2019-07-07
2846 Pattern recovery by recurrent circuits in piriform cortex
Bolding, K. A.; Nagappan, S.; Han, B.-X.; Wang, F.; Franks, K.
10.1101/694331 — neuroscience — Posted on 2019-07-07
2848 EEG power spectra and subcortical pathology in chronic disorders of consciousness
Lutkhenoff, E.; Nigri, A.; Rossi Sebastiano, D.; Sattin, D.; Visani, E.; Rosazza, C.; D'Incerti, L.; Bruzzone, M.; Franceschetti, S.; Leonardi, M.; Ferraro, S.; Monti, M. M.
10.1101/695288 — neuroscience — Posted on 2019-07-07
2852 Correcting for sparsity and non-independence in glycomic data through a systems biology framework
Bao, B.; Kellman, B. P.; Chiang, A. W. T.; York, A. K.; Mohammad, M. A.; Haymond, M. W.; Bode, L.; Lewis, N. E.
10.1101/693507 — systems biology — Posted on 2019-07-07
2856 Structure and mechanism of a cyclic trinucleotide-activated bacterial endonuclease mediating bacteriophage immunity
Lau, R. K.; Ye, Q.; Patel, L.; Berg, K. R.; Mathews, I. T.; Watrous, J. D.; Whiteley, A. T.; Lowey, B.; Mekalanos, J. J.; Kranzusch, P. J.; Jain, M.; Corbett, K.
10.1101/694703 — biochemistry — Posted on 2019-07-07
2859 Magnetic Resonance measurements of sub-cellular membrane structures in live and fixed neural tissue
Williamson, N. H.; Ravin, R.; Benjamini, D.; Merkle, H.; Falgairolle, M.; O'Donovan, M. J.; Blivis, D.; Cai, T. X.; Gorash, N. S.; Bai, R.; Basser, P.
10.1101/694661 — biophysics — Posted on 2019-07-07
2863 Wide distribution of phage that infect freshwater SAR11 bacteria
Chen, L.-X.; Zhao, Y.; McMahon, K. D.; Mori, J. F.; Jessen, G. L.; Nelson, T. C.; Warren, L. A.; Banfield, J. F.
10.1101/672428 — microbiology — Posted on 2019-07-07
2864 GenEpi: Gene-based Epistasis Discovery Using Machine Learning
Chang, Y.-C.; Wu, J.-T.; Hong, M.-Y.; Tung, Y.-A.; Hsieh, P.-H.; Yee, S. W.; Giacomini, K. M.; Oyang, Y.-J.; Chen, C.-Y.; Alzheimer's Disease Neuroimaging Initiative,
10.1101/421719 — bioinformatics — Posted on 2019-07-07
2865 Protection of bona fide T follicular memory cells during tissue isolation reveals their persistence, plasticity and functional impact
Künzli, M.; Schreiner, D. P.; Pereboom, T.; Swarnalekha, N.; Lötscher, J.; Ertuna, Y. I.; Roux, J.; Geier, F.; Hess, C.; Taylor, J. T.; King, C. G.
10.1101/677559 — immunology — Posted on 2019-07-07
2867 Megakaryocyte TGFβ1 Partitions Hematopoiesis into Immature Progenitor/Stem Cells and Maturing Precursors
Di Giandomenico, S.; Rabbany, P.; Molle, N.; Yabut, M.; Zeinah, G. A.; Stephens, T.; Messali, N.; Rafii, S.; Scandura, J. M.
10.1101/689901 — cell biology — Posted on 2019-07-06
2869 HORMA domain proteins and a Pch2-like ATPase regulate bacterial cGAS-like enzymes to mediate bacteriophage immunity
Ye, Q.; Lau, R. K.; Mathews, I. T.; Watrous, J. D.; Azimi, C. S.; Jain, M.; Corbett, K. D.
10.1101/694695 — biochemistry — Posted on 2019-07-06
2870 Proposed model of the Dictyostelium cAMP receptors bound to cAMP
Greenhalgh, J. C.; Chandran, A.; Harper, M. T.; Ladds, G.; Rahman, T.
10.1101/694810 — biochemistry — Posted on 2019-07-06
2871 Loop-closure Kinetics Reveal a Stable, Right-handed DNA Intermediate in Cre Recombination
Shoura, M. J.; Giovan, S. M.; Vetcher, A. V.; Ziraldo, R.; Hanke, A.; Levene, S. D.
10.1101/695130 — biophysics — Posted on 2019-07-06
2875 Distinct oligodendrocyte populations have spatial preference and injury-specific responses
Floriddia, E. M.; Zhang, S.; van Bruggen, D.; Goncalves dos Santos, J. P.; Altinkok, M.; Llores-Bobadilla, E.; Frisen, J.; Castelo-Branco, G.
10.1101/580985 — neuroscience — Posted on 2019-07-06
2876 Mobile Phone Based Strategies for Preconception Education in Rural Africa
Kassa, Z. Y.; Tenaw, Z.; Astatkie, A.; Siyoum, M.; Bekele, G.; Taye, K.; Mekonnen, S.; Kassaye, Z.
10.1101/586636 — epidemiology — Posted on 2019-07-06
2878 The epigenomic landscape regulating organogenesis in human embryos linked to developmental disorders
Gerrard, D. T.; Berry, A. A.; Jennings, R. E.; Birket, M. J.; Withey, S. J.; Short, P.; Jimenez-Gancedo, S.; Firbas, P.; Donaldson, I.; Sharrocks, A. D.; Piper Hanley, K.; Hurles, M. E.; Gomez-Skarmeta, J. L.; Bobola, N.; Hanley, N. A.
10.1101/691766 — genomics — Posted on 2019-07-06
2880 Mechanisms of active regulation of biomolecular condensates
Soeding, J.; Zwicker, D.; Sohrabi-Jahromi, S.; Boehning, M.; Kirschbaum, J.
10.1101/694406 — cell biology — Posted on 2019-07-06
2882 Functional cyclic AMP signalling is required for the actions of IP3 on the Ca2+ transient in cardiac atria and beating rate in sino-atrial node
Capel, R. A.; Collins, T.; Bose, S. J.; Rajasundaram, S.; Ayagama, T.; Zaccolo, M.; Burton, R. A.; Terrar, D. A.
10.1101/694349 — physiology — Posted on 2019-07-06
2884 Integration of Alzheimer’s disease genetics and myeloid cell genomics identifies novel causal variants, regulatory elements, genes and pathways
Novikova, G.; Kapoor, M.; TCW, J.; Abud, E. M.; Efthymiou, A. G.; Cheng, H.; Fullard, J. F.; Bendl, J.; Roussos, P.; Poon, W. W.; Hao, K.; Marcora, E.; Goate, A. M.
10.1101/694281 — genomics — Posted on 2019-07-06
2885 Genetically encoded nanostructures enable acoustic manipulation of engineered cells
Wu, D.; Baresch, D.; Cook, C.; Malounda, D.; Maresca, D.; Abundo, M. P.; Mittelstein, D. R.; Shapiro, M. G.
10.1101/691105 — bioengineering — Posted on 2019-07-06
2886 Within-family studies for Mendelian randomization: avoiding dynastic, assortative mating, and population stratification biases
Brumpton, B.; Sanderson, E.; Hartwig, F. P.; Harrison, S.; Vie, G. A.; Cho, Y.; Howe, L.; Hughes, A.; Boomsma, D.; Havdahl, A.; Hopper, J.; Neale, M.; Nivard, M.; Pedersen, N.; Reynolds, C.; Tucker-Drob, E. M.; Grotzinger, A.; Howe, L.; Morris, T.; Li, S.; The Mendelian randomization within-family consorti, ; Chen, W.-M.; Bjorngaard, J. H.; Hveem, K.; Willer, C.; Evans, D.; Kaprio, J.; Davey Smith, G.; Asvold, B.; Hemani, G.; Davies, N. M.
10.1101/602516 — genetics — Posted on 2019-07-05
2888 Motor planning modulates neural activity patterns in early human auditory cortex
Gale, D. J.; Areshenkoff, C. N.; Honda, C. T.; Johnsrude, I. S.; Flanagan, J. R.; Gallivan, J. P.
10.1101/682609 — neuroscience — Posted on 2019-07-05
2889 NINscope: a versatile miniscope for multi-region circuit investigations
de Groot, A.; van den Boom, B. J. G.; van Genderen, R. M.; Coppens, J.; van Veldhuijzen, J.; Bos, J.; Hoedemaker, H.; Negrello, M.; Willuhn, I.; De Zeeuw, C. I.; Hoogland, T. M.
10.1101/685909 — neuroscience — Posted on 2019-07-05
2891 The emergent Yo-yo movement of nuclei driven by collective cytoskeletal remodeling in pseudo-synchronous mitotic cycles
Lv, Z.; Rosenbaum, J.; Zhang, X.; Mohr, S.; Preiss, H.; Kruss, S.; Alim, K.; Aspelmeier, T.; Grosshans, J.
10.1101/662965 — developmental biology — Posted on 2019-07-05
2893 Cross-species Functional Alignment Reveals Evolutionary Hierarchy Within the Connectome
Xu, T.; Nenning, K.-H.; Schwartz, E.; Hong, S.-J.; Vogelstein, J. T.; Fair, D. A.; Schroeder, C. E.; Margulies, D. S.; Smallwood, J.; Milham, M. P.; Langs, G.
10.1101/692616 — neuroscience — Posted on 2019-07-05
2895 Pseudo-chromosome length genome assembly of a double haploid ‘Bartlett’ pear (Pyrus communis L.)
Linsmith, G.; Rombauts, S.; Montanari, S.; Deng, C. H.; Celton, J.-M.; Guerif, P.; Liu, C.; Lohaus, R.; Zurn, J. D.; Cestaro, A.; Bassil, N. V.; Bakker, L. V.; Schijlen, E.; Gardiner, S. E.; Lespinasse, Y.; Durel, C.-E.; Velasco, R.; Neale, D. B.; Chagne, D.; Van de Peer, Y.; Troggio, M.; Bianco, L.
10.1101/651778 — plant biology — Posted on 2019-07-05
2902 CRK2 and C-terminal phosphorylation of NADPH oxidase RBOHD regulate ROS production in Arabidopsis
Kimura, S.; Hunter, K.; Vaahtera, L.; Tran, H. C.; Vaattovaara, A.; Rokka, A.; Stolze, S. C.; Harzen, A.; Meissner, L.; Wilkens, M.; Hamann, T.; Toyota, M.; Nakagami, H.; Wrzaczek, M.
10.1101/618819 — plant biology — Posted on 2019-07-05
2905 An improved pig reference genome sequence to enable pig genetics and genomics research
Warr, A.; Affara, N.; Aken, B.; Beiki, H.; Bickhart, D. M.; Billis, K.; Chow, W.; Eory, L.; Finlayson, H. A.; Flicek, P.; Giron, C. G.; Griffin, D. K.; Hall, R.; Hannum, G.; Hourlier, T.; Howe, K.; Hume, D. A.; Izuogu, O.; Kim, K.; Koren, S.; Liu, H.; Manchanda, N.; Martin, F. J.; Nonneman, D. J.; O'Connor, R. E.; Phillippy, A. M.; Rohrer, G. A.; Rosen, B. D.; Rund, L. A.; Sargent, C. A.; Schook, L. B.; Schroeder, S. G.; Schwartz, A. S.; Skinner, B. M.; Talbot, R.; Tseng, E.; Tuggle, C. K.; Watson, M.; Smith, T. P.; Archibald, A. L.
10.1101/668921 — genomics — Posted on 2019-07-05
2906 Neuropsychiatric phenotypes and a distinct constellation of ASD features in 3q29 deletion syndrome: results from the 3q29 registry
Pollak, R. M.; Murphy, M. M.; Epstein, M. P.; Zwick, M. E.; Klaiman, C.; Saulnier, C. A.; The Emory 3q29 Project, ; Mulle, J. G.
10.1101/386243 — genetics — Posted on 2019-07-05
2910 Ancestral persistence of vestibulo-spinal reflexes in axial muscles in humans
Guillaud, E.; Faure, C.; Doat, E.; Bouyer, L.; Guehl, D.; Cazalets, J.-R.
10.1101/564617 — neuroscience — Posted on 2019-07-05
2911 Liquid droplet germ granules require assembly and localized regulators for mRNA repression
Aoki, S. T.; Lynch, T. R.; Crittenden, S. L.; Bingman, C. A.; Wickens, M.; Kimble, J.
10.1101/382838 — developmental biology — Posted on 2019-07-05
2913 ShuTu: Open-Source Software for Efficient and Accurate Reconstruction of Dendritic Morphology
Jin, D. Z.; Zhao, T.; Hunt, D. L.; Tillage, R. P.; Hsu, C.-L.; Spruston, N.
10.1101/226548 — neuroscience — Posted on 2019-07-05
2915 Population genomics supports clonal reproduction and multiple gains and losses of parasitic abilities in the most devastating nematode plant pest
Koutsovoulos, G.; Marques, E.; Arguel, M.-J.; Duret, L.; Machado, A. C.; Carneiro, R. M.; Kozlowski, D. K.; Bailly-Bechet, M.; Castagnone-Sereno, P.; Albuquerque, E. V.; Danchin, E. G.
10.1101/362129 — evolutionary biology — Posted on 2019-07-05
2916 Spatial Ecology of Territorial Populations
Weiner, B. G.; Posfai, A.; Wingreen, N. S.
10.1101/694257 — ecology — Posted on 2019-07-05
2917 Molecular and cellular phenotypic differences distinguish murine syngeneic models from human tumors
Zhong, W.; Myers, J. S.; Wang, F.; Wang, K.; Lucas, J.; Rosfjord, E.; Lucas, J.; Hooper, A. T.; Yang, S.; Lemon, L.; Guffroy, M.; May, C.; Bienkowska, J. R.; Rejto, P. A.
10.1101/694232 — cancer biology — Posted on 2019-07-05
2919 A primate-specific retroviral enhancer wires the XACT lncRNA into the core pluripotency network in human
Casanova, M.; Moscatelli, M.; Chauviere, L. E.; Huret, C.; Samson, J.; Liyakat Ali, T. M.; Rosspopoff, O.; Rougeulle, C.
10.1101/693416 — molecular biology — Posted on 2019-07-05
2922 Differences in strategic abilities but not associative processes explain memory development
Mueller, N.; Kohn, N.; van Buuren, M.; Klijn, N.; Emmen, H.; Berkers, R. M.; Dresler, M.; Janzen, G.; Fernandez, G.
10.1101/693895 — neuroscience — Posted on 2019-07-05
2923 Complexity matching: brain signals mirror environment information patterns during music listening and reward
Carpentier, S. J.; McCulloch, A. R.; Brown, T.; Ritter, P.; Wang, Z.; Shen, K.; Salimpoor, V.; McIntosh, R.
10.1101/693531 — neuroscience — Posted on 2019-07-05
2927 Responses of Neurons in the Rostral Ventrolateral Medulla (RVLM) of Conscious Felines to Anticipated and Passive Movements
Miller, D. M.; Joshi, A. S.; Kambouroglos, E. T.; Engstrom, I. C.; Bielanin, J. P.; Wittman, S. R.; McCall, A. A.; Barman, S. M.; Yates, B. J.
10.1101/693408 — physiology — Posted on 2019-07-05
2929 Ohm’s Law for emergent gene expression under fitness pressure
Ciechonska, M.; Sturrock, M.; Grob, A.; Larrouy-Maumus, G.; Shahrezaei, V.; Isalan, M.
10.1101/693234 — systems biology — Posted on 2019-07-05
2930 Prediction of microscopic metastases in patients with metachronous oligo-metastases after curative treatment of Non-Small Cell Lung Cancer.
Wolff, H. B.; Alberts, L.; Kastelijn, E. A.; Verstegen, N. E.; El Sharouni, S. Y.; Schramel, F. M. N. H.; Vos, R.; Coupe, V. M. H.
10.1101/693747 — cancer biology — Posted on 2019-07-05
2931 Three-dimensional total internal reflection fluorescence nanoscopy with sub-10 nm resolution
Szalai, A. M.; Siarry, B.; Lukin, J.; Williamson, D. J.; Unsain, N.; Becerra, R.; Refojo, D.; Caceres, A.; Pilo-Pais, M.; Acuna, G.; Owen, D. M.; Simoncelli, S.; Stefani, F. D.
10.1101/693994 — biophysics — Posted on 2019-07-05
2933 Correcting for sparsity and non-independence in glycomic data through a system biology framework
Bao, B.; Kellman, B. P.; Chiang, A. W. T.; York, A. K.; Mohammad, M. A.; Haymond, M. W.; Bode, L.; Lewis, N. E.
10.1101/693507 — systems biology — Posted on 2019-07-05
2935 Does human P-glycoprotein efflux involve transmembrane alpha helix breakage?
Bonito, C. A.; Ferreira, M. J. U.; Ferreira, R.; dos Santos, D. J.
10.1101/692988 — biophysics — Posted on 2019-07-05
2938 Juxta-membrane S-acylation of plant receptor-like kinases - fortuitous or functional?
Hurst, C. H.; Wright, K. M.; Turnbull, D.; Leslie, K.; Jones, S.; Hemsley, P. A.
10.1101/693887 — plant biology — Posted on 2019-07-05
2939 Selective phosphorylation of AKT isoforms in response to dietary cues
Trautenberg, L. C.; Prince, E.; Maas, C.; Beier, N.; Honold, F.; Grzybek, M.; Brankatschk, M.
10.1101/693242 — physiology — Posted on 2019-07-05
2940 Motor planning modulates neural activity patterns in early human auditory cortex
Gale, D. J.; Areshenkoff, C. N.; Honda, C. T.; Johnsrude, I. S.; Flanagan, J. R.; Gallivan, J. P.
10.1101/682609 — neuroscience — Posted on 2019-07-05
2941 HERV-K and HERV-W transcriptional activity in Myalgic Encephalomyelitis/ Chronic Fatigue Syndrome
Rodrigues, L. S.; Nali, L. H. d. S.; Leal, C. O. D.; Sabino, E. C.; Lacerda, E. M.; Kingdon, C. C.; Nacul, L.; Romano, C. M.
10.1101/693465 — molecular biology — Posted on 2019-07-05
2944 Modeling the Role of Hypoxia in Glioblastoma Growth and Recurrence Patterns
Curtin, L.; Hawkins-Daarud, A.; Porter, A.; Owen, M. R.; van der Zee, K.; Swanson, K. R.
10.1101/691238 — cancer biology — Posted on 2019-07-05
2947 PALM-Seq: simultaneous sequencing of cell-free long RNA and small RNA
Yang, X.; Wang, T.; Zhu, S.; Zeng, J.; Xing, Y.; Zhou, Q.; Liu, Z.; Chen, H.; Sun, J.; Li, L.; Xu, J.; Geng, C.; Xu, X.; Wang, J.; Yang, H.; Zhu, S.; Chen, F.; Wang, W.-J.
10.1101/686055 — molecular biology — Posted on 2019-07-05
2949 A Single-Cell Immune Atlas of Triple Negative Breast Cancer Reveals Novel Immune Cell Subsets
Qiu, S.; Hong, R.; Zhuang, Z.; Li, Y.; Zhu, L.; Lin, X.; Zheng, Q.; Liu, S.; Zhang, K.; Huang, M.; Lee, K.; Lu, Q.; Xia, W.; Xu, F.; Wang, X.; Tang, J.; Xiao, X.; Wei, W.; Yuan, Z.; Shi, Y.; Hou, Y.; Zhang, X.; Wang, J.; Yang, H.; Zhan, Q.; Li, B.; Wang, S.
10.1101/566968 — immunology — Posted on 2019-07-05
2950 Next-Gen sequencing of novel pandemic swine flu virus in India revealed novel mutations across the genome
Dash, P. K.; Pattabiraman, C.; Tandel, K.; Sharma, S.; Kumar, J. S.; Siddappa, S.; Gowda, M.; Krishna, S.; Parida, M. M.
10.1101/693358 — genomics — Posted on 2019-07-05
2953 Deep learning detects virus presence in cancer histology
Kather, J. N.; Schulte, J.; Grabsch, H. I.; Loeffler, C.; Muti, H. S.; Dolezal, J.; Srisuwananukorn, A.; Agrawal, N.; Kochanny, S.; von Stillfried, S.; Boor, P.; Yoshikawa, T.; Jaeger, D.; Trautwein, C.; Bankhead, P.; Cipriani, N. A.; Luedde, T.; Pearson, A. T.
10.1101/690206 — cancer biology — Posted on 2019-07-05
2957 Effects of distraction on taste-related neural processing
Duif, I.; Wegman, J. B.; Mars, M. M.; de Graaf, K.; Smeets, P. A.; Aarts, E.
10.1101/693754 — neuroscience — Posted on 2019-07-05
2960 Domain-centric dissection and classification of prokaryotic poly(3-hydroxyalkanoate) synthases
Liu, Z.; Zhu, Z.; Yang, J.; Wu, S.; Liu, Q.; Wang, M.; Cheng, H.; Yan, J.; Wang, L.
10.1101/693432 — genomics — Posted on 2019-07-05
2963 Variations in terrestrial arthropod DNA metabarcoding methods recovers robust beta diversity but variable richness and site indicators based on exact sequence variants
Porter, T. M.; Morris, D. M.; Basiliko, N.; Hajibabaei, M.; Doucet, D.; Bowman, S.; Emilson, E. J. S.; Emilson, C. E.; Chartrand, D.; Wainio-Keizer, K.; Seguin, A.; Venier, L.
10.1101/693499 — ecology — Posted on 2019-07-05
2964 Activation of Smad 2/3 signaling by low shear stress mediates artery inward remodeling
Min, E.; Baeyens, N.; Hu, R.; Zhuang, Z.; Chen, M.; Huang, B.; Zarkada, G.; Acheampong, A.; McEntee, K.; Simons, M.; Eichmann, A.; Schwartz, M.
10.1101/691980 — cell biology — Posted on 2019-07-05
2965 Oncoprotein GT198 Vaccination Delays Tumor Growth in MMTV-PyMT Mice
Achyut, B. R.; Zhang, H.; Angara, K.; Mivechi, N. F.; Arbab, A. S.; Ko, L.
10.1101/693606 — cancer biology — Posted on 2019-07-05
2967 ARPP19 promotes MYC expression and associates with patient relapse in acute myeloid leukemia
Makela, E.; Loyttyniemi, E.; Salmenniemi, U.; Kauko, O.; Varila, T.; Kairisto, V.; Itala-Remes, M.; Westermarck, J.
10.1101/693705 — cancer biology — Posted on 2019-07-05
2968 Protocols for all-atom reconstruction and high-resolution refinement of protein-peptide complex structures
Badaczewska-Dawid, A.; Khramushin, A.; Kolinski, A.; Schueler-Furman, O.; Kmiecik, S.
10.1101/692160 — bioinformatics — Posted on 2019-07-05
2969 Customizable, engineered substrates for rapid screening of cellular cues
Huethorst, E.; Cutiongco, M.; Campbell, F.; Saeed, A.; Love, R.; Reynolds, P.; Dalby, M.; Gadegaard, N.
10.1101/693598 — bioengineering — Posted on 2019-07-05
2970 Identification of drugs for leukaemia differentiation therapy by network pharmacology
Christodoulou, E. G.; Lee, L. M.; Lee, K. L.; Fung, T. K.; So, E.; Petretto, E. G.; Ong, S. T.; Rackham, O. J. L.
10.1101/676106 — systems biology — Posted on 2019-07-05
2974 ATP7B Variant c.1934T>G p.Met645Arg Causes Wilson Disease by Promoting Exon 6 Skipping
Merico, D.; Spickett, C.; O'Hara, M.; Kakaradov, B.; Deshwar, A.; Fradkin, P.; Gandhi, S.; Gao, J.; Grant, S.; Schmitges, F. W.; Sun, M.; Shalev, Z.; Cahill, M.; Dowling, J. J.; Fransson, J.; Wienholds, E.; Frey, B. J.
10.1101/693572 — genetics — Posted on 2019-07-05
2975 The human-specific BOLA2 duplication modifies iron homeostasis and anemia predisposition in chromosome 16p11.2 autism patients
Giannuzzi, G.; Schmidt, P. J.; Porcu, E.; Willemin, G.; Munson, K. M.; Nuttle, X.; Earl, R.; Chrast, J.; Hoekzema, K.; Risso, D.; Mannik, K.; De Nittis, P.; Baratz, E. D.; 16p11.2 Consortium, ; Herault, Y.; Gao, X.; Philpott, C. C.; Bernier, R. A.; Kutalik, Z.; Fleming, M. D.; Eichler, E. E.; Reymond, A.
10.1101/693952 — genetics — Posted on 2019-07-05
2978 BR-bodies provide selectively permeable condensates that stimulate mRNA decay and prevent release of decay intermediates
Al-Husini, N.; Tomares, D. T.; Pfaffenberger, Z.; Muthunayake, N. S.; Samad, M. A.; Zuo, T.; Bitar, O.; Aretakis, J. R.; Bharmal, M. H. M.; Gega, A.; Biteen, J. S.; Childers, W. S.; Schrader, J. M.
10.1101/690628 — biochemistry — Posted on 2019-07-05
2979 Functionally Distinct Subgroups of Oligodendrocyte Precursor Cells Integrate Neural Activity and Execute Myelin Formation
Hoche, T.; Marisca, R.; Agirre, E.; Hoodless, L. J.; Barkey, W.; Auer, F.; Castelo-Branco, G.; Czopka, T.
10.1101/689505 — neuroscience — Posted on 2019-07-05
2980 Insights into the bacterial profiles and resistome structures following severe 2018 flood in Kerala, South India
Jaya Divakaran, S.; Sara Philip, J.; Chereddy, P.; Nori, S. R. C.; Jaya Ganesh, A.; John, J.; Nelson-Sathi, S.
10.1101/693820 — microbiology — Posted on 2019-07-05
2981 Autocatalytic chemical networks preceded proteins and RNA in evolution
Xavier, J. C.; Hordijk, W.; Kauffman, S.; Steel, M.; Martin, W. F.
10.1101/693879 — evolutionary biology — Posted on 2019-07-05
2983 Direct Measurement of Light and Heavy Antibody Chains Using Differential Ion Mobility Spectrometry and Middle-Down Mass Spectrometry
Melani, R. D.; Srzentic, K.; Gerbasi, V. R.; McGee, J. P.; Huguet, R.; Fornelli, L.; Kelleher, N. L.
10.1101/693473 — biochemistry — Posted on 2019-07-05
2984 Mechanism of preferential complex formation by Apoptosis Signal-regulating Kinases
Trevelyan, S. J.; Brewster, J. L.; Burgess, A. E.; Crowther, J. M.; Cadell, A. L.; Parker, B. L.; Croucher, D. R.; Dobson, R. C.; Murphy, J. M.; Mace, P. D.
10.1101/693663 — biochemistry — Posted on 2019-07-05
2987 Macropinocytosis and Clathrin-Dependent Endocytosis Play Pivotal Roles for the Infectious Entry of Puumala Virus.
Bauherr, S.; Larsberg, F.; Petrich, A.; Sperber, H. S.; Klose, V.; Azab, W.; Schade, M.; Luckner, M.; Höfer, C. T.; Lehmann, M. J.; Witkowski, P. T.; Krüger, D. H.; Herrmann, A.; Schwarzer, R.
10.1101/694208 — microbiology — Posted on 2019-07-05
2993 A restriction enzyme reduced representation sequencing approach for low-cost, high-throughput metagenome profiling
Hess, M.; Rowe, S. J.; Van Stijn, T. C.; Henry, H. M.; Hickey, S. M.; Brauning, R.; McCulloch, A. F.; Hess, A. S.; Kirk, M. R.; Kittelmann, S.; Wood, G. R.; Janssen, P. H.; McEwan, J. C.
10.1101/694133 — microbiology — Posted on 2019-07-05
2997 Model order reduction for left ventricular mechanics via congruency training
Di Achille, P.; Parikh, J.; Khamzin, S.; Solovyova, O.; Kozloski, J.; Gurev, V.
10.1101/694075 — biophysics — Posted on 2019-07-05
2998 Slow cortico-cortical connectivity (2-5Hz) is a new robust signature of conscious states
Bourdillon, P.; Hermann, B.; Guenot, M.; Bastuji, H.; Isnard, J.; King, J.-R.; Sitt, J.; Naccache, L.
10.1101/692970 — neuroscience — Posted on 2019-07-05
2999 The value of what’s to come: neural mechanisms coupling prediction error and reward anticipation
Iigaya, K.; Hauser, T. U.; Kurth-Nelson, Z.; O'Doherty, J. P.; Dayan, P.; Dolan, R. J.
10.1101/588699 — neuroscience — Posted on 2019-07-05
3001 Excess light priming in Arabidopsis thaliana with altered DNA methylomes
Ganguly, D. R.; Stone, B. A.; Bowerman, A. F.; Eichten, S. R.; Pogson, B. J.
10.1101/475798 — plant biology — Posted on 2019-07-05
3002 Molecular mechanism for the recognition of sequence-divergent CIF peptides by the plant receptor kinases GSO1/SGN3 and GSO2.
Okuda, S.; Fujita, S.; Moretti, A.; Hohmann, U.; Gonzalez Doblas, V. G.; Ma, Y.; Pfister, A.; Brandt, B.; Geldner, N.; Hothorn, M.
10.1101/692228 — plant biology — Posted on 2019-07-05
3003 Transferrin plays a central role to maintain coagulation balance by interacting with clotting factors
Tang, X.; Zhang, Z.; Fang, M.; Han, Y.; Wang, S.; Xue, M.; Li, Y.; Zhang, L.; Wu, J.; Yang, B.; Lu, Q.; Du, X.; Lai, R.
10.1101/646075 — molecular biology — Posted on 2019-07-05
3005 FYN tyrosine kinase, a downstream target of receptor tyrosine kinases, modulates anti-glioma immune responses
Comba, A.; Dunn, P. J.; Argento, A. E.; Kadiyala, P.; Ventosa, M.; Patel, P.; Zamler, D.; Nunez, F. J.; Zhao, L.; Castro, M. G.; Lowenstein, P. R.
10.1101/608505 — cancer biology — Posted on 2019-07-05
3008 CTCF-dependent chromatin boundaries formed by asymmetric nucleosome arrays with decreased linker length
Clarkson, C. T.; Deeks, E. A.; Samarista, R.; Mamayusupova, H.; Zhurkin, V. B.; Teif, V. B.
10.1101/618827 — genomics — Posted on 2019-07-05
3009 Bordetella Colonization Factor A (BcfA) elicits protective immunity against Bordetella bronchiseptica in the absence of an additional adjuvant
Yount, K. S.; Jennings-Gee, J.; Caution, K.; Fullen, A. R.; Corps, K. N.; Quataert, S.; Deora, R.; Dubey, P.
10.1101/692830 — immunology — Posted on 2019-07-04
3012 Analysis of housekeeping genes in the peripheral blood of retinoblastoma patients
Martinez-Sanchez, M.; Hernandez-Monge, J.; Moctezuma-Davila, M.; Rangel-Charqueno, M.; Olivares-Ilana, V.
10.1101/693101 — cancer biology — Posted on 2019-07-04
3013 Functional maturation of human neural stem cells in a 3D bioengineered brain model enriched with fetal brain matrix
Kaplan, D. L.; Sood, D.; Cairns, D. M.; Dabbi, J. M.; Ramakrishnan, C.; Deisseroth, K.; Black, L. D.; Santaniello, S.
10.1101/691907 — developmental biology — Posted on 2019-07-04
3016 tappAS: A comprehensive computational framework for the analysis of the functional impact of differential splicing
de la Fuente, L.; Arzalluz-Luque, A.; Tardaguila, M.; del Risco, H.; Marti, C.; Tarazona, S.; Salguero, P.; Scott, R.; Alastrue-Agudo, A.; Bonilla, P.; Newman, J.; McIntyre, L.; Moreno-Manzano, V.; Conesa, A.
10.1101/690743 — bioinformatics — Posted on 2019-07-04
3019 Development of copy number assays for detection and surveillance of piperaquine resistance associated plasmepsin 2/3 copy number variation in Plasmodium falciparum
Jacob, C. G.; Ansbro, M. R.; Amato, R. G.; Kekre, M.; Vongpromek, R.; Dhorda, M.; Amaratunga, C.; Sreng, S.; Suon, S.; Miotto, O.; Fairhurst, R. M.; Wellems, T. G.; Kwiatkowski, D. P.
10.1101/655209 — genetics — Posted on 2019-07-04
3020 A roadmap to mammalian oral microbiome evolution with dental calculus
Brealey, J. C.; Leitao, H. G.; van der Valk, T.; Xu, W.; Bougiouri, K.; Dalen, L.; Guschanski, K.
10.1101/596791 — evolutionary biology — Posted on 2019-07-04
3026 The midbody interactome reveals new unexpected roles for PP1 phosphatases in cytokinesis
Capalbo, L.; Bassi, Z.; Geymonat, M.; Todesca, S.; Copoiu, L.; Enright, A.; Callaini, G.; Riparbelli, M. G.; Yu, L.; Choudhary, J.; Ferrero, E.; Wheatley, S.; Douglas, M.; Mishima, M.; D'Avino, P. P.
10.1101/569459 — cell biology — Posted on 2019-07-04
3027 A systems genomics approach to uncover patient-specific pathogenic pathways in a complex disease
Brooks, J.; Modos, D.; Sudhakar, P.; Fazekas, D.; Zoufir, A.; Kapuy, O.; Szalay-Beko, M.; Madgwick, M.; Verstockt, B.; Hall, L.; Watson, A.; Tremelling, M.; Parkes, M.; Vermeire, S.; Bender, A.; Carding, S.; Korcsmaros, T.
10.1101/692269 — bioinformatics — Posted on 2019-07-04
3028 Variation and inheritance of small RNAs in maize inbreds and F1 hybrids
Crisp, P. A.; Hammond, R.; Zhou, P.; Vaillancourt, B.; Lipzen, A.; Daum, C.; Barry, K.; de Leon, N.; Buell, C. R.; Kaeppler, S. M.; Meyers, B. C.; Hirsch, C. N.; Springer, N. M.
10.1101/692400 — genomics — Posted on 2019-07-04
3029 A machine learning approach predicts essential genes and pharmacological targets in cancer
Gilvary, C.; Madhukar, N.; Gayvert, K.; Foronda, M.; Perez, A.; Leslie, C. S.; Dow, L.; Pandey, G.; Elemento, O.
10.1101/692277 — cancer biology — Posted on 2019-07-04
3034 Hemispheric asymmetries in resting-state EEG and fMRI are related to approach and avoidance behaviour, but not to eating behaviour or BMI
Morys, F.; Janssen, L. K.; Cesnaite, E.; Beyer, F.; Garcia-Garcia, I.; Kube, J.; Kumral, D.; Liem, F.; Mehl, N.; Mahjoory, K.; Schrimpf, A.; Gaebler, M.; Margulies, D. S.; Villringer, A.; Neumann, J.; Nikulin, V.; Horstmann, A.
10.1101/692012 — neuroscience — Posted on 2019-07-04
3037 Neurology-related protein biomarkers are associated with general fluid cognitive ability and brain volume in older age
Harris, S. E.; Cox, S. R.; Bell, S.; Marioni, R. E.; Prins, B. P.; Pattie, A.; Corley, J.; Munoz Maniega, S.; Valdes Hernandez, M.; Morris, Z.; John, S.; Bronson, P. G.; Tucker-Drob, E. M.; Starr, J. M.; Bastin, M. E.; Wardlaw, J. M.; Butterworth, A. S.; Deary, I. J.
10.1101/692459 — neuroscience — Posted on 2019-07-04
3039 MethylNet: A Modular Deep Learning Approach to Methylation Prediction
Levy, J. J.; Titus, A. J.; Petersen, C. L.; Chen, D.; Salas, L. A.; Christensen, B. C.
10.1101/692665 — bioinformatics — Posted on 2019-07-04
3040 The YdiU Domain Modulates Bacterial Stress Signaling through UMPylation
li, b.; Yang, Y.; Yue, Y.; Li, C.; Song, N.; Yuan, Z.; Wang, Y.; Ma, Y.; Li, H.; Zhang, F.; Wang, W.; Jia, H.; Li, P.; Li, X.; Dong, H.; Gu, L.
10.1101/692707 — biochemistry — Posted on 2019-07-04
3041 Genetic immunodeficiency and autoimmune disease reveal distinct roles of Hem1 in the WAVE2 and mTORC2 complexes
Comrie, W. A.; Poli, M. C.; Cook, S. A.; Similuk, M.; Oler, A.; Faruqi, A. J.; Kuhns, D. B.; Yang, S.; Carisey, A. F.; Fournier, B.; Anderson, D. E.; Price, S.; Chahla, W. A.; Vargas-Hernandez, A.; Forbes, L. R.; Mace, E. M.; Cao, T. N.; Coban-Akdemir, Z. H.; Jhangiani, S. N.; Muzny, D. M.; Gibbs, R. A.; Lupski, J. R.; Orange, J. S.; Cuvelier, G. D. E.; Al Hassani, M.; AL Kaabi, N.; Al Yafei, Z.; Jyonouchi, S.; Raje, N.; Caldwell, J. W.; Huang, Y.; Burkhardt, J. K.; Latour, S.; Chen, B.; ElGhazali, G.; Rao, V. K.; Chinn, I. K.; Lenardo, M. J.
10.1101/692004 — immunology — Posted on 2019-07-04
3046 Emergence of the Ug99 lineage of the wheat stem rust pathogen through somatic hybridisation
Li, F.; Upadhyaya, N.; Sperschneider, J.; Matny, O.; Nguyen-Phuc, H.; Mago, R.; Raley, C.; Miller, M.; Silverstein, K.; Henningsen, E.; Hirsch, C.; Visser, B.; Pretorius, Z.; Steffenson, B.; Schwessinger, B.; Dodds, P.; Figueroa, M.
10.1101/692640 — genetics — Posted on 2019-07-04
3050 High density of white-faced capuchins (Cebus capucinus) and habitat quality in the Taboga Forest of Costa Rica
Tinsley Johnson, E.; Benitez, M.; Fuentes, A.; McLean, C. R.; Norford, A. B.; Ordonez, J. C.; Beehner, J. C.; Bergman, T. J.
10.1101/692293 — animal behavior and cognition — Posted on 2019-07-04
3054 High-Resolution Cryo-EM Reveals Dynamics in the Murine Norovirus Capsid
Snowden, J. S.; Hurdiss, D. L.; Adeyemi, O. O.; Ranson, N. A.; Herod, M. R.; Stonehouse, N. J.
10.1101/693143 — microbiology — Posted on 2019-07-04
3055 Short-term celecoxib supplementation impacts compositional and functional features of in vitro gut microbial ecosystem
Hernandez-Sanabria, E.; Heiremans, E.; Calatayud, M.; Props, R.; Leclercq, L.; Snoeys, J.; Van de Wiele, T.
10.1101/679050 — microbiology — Posted on 2019-07-04
3056 Genome-wide rare variant analysis for thousands of phenotypes in 54,000 exomes
Cirulli, E. T.; White, S.; Read, R. W.; Elhanan, G.; Metcalf, W. J.; Schlauch, K. A.; Grzymski, J. J.; Lu, J.; Washington, N. L.
10.1101/692368 — genetics — Posted on 2019-07-04
3058 Examining the relationship between prenatal depression, amygdala-prefrontal structural connectivity and behaviour in preschool children
Hay, R. E.; Reynolds, J. E.; Grohs, M. N.; Paniukov, D.; Giesbrecht, G. F.; Letourneau, N.; Dewey, D.; Lebel, C.
10.1101/692335 — neuroscience — Posted on 2019-07-04
3060 Diversity and some bioactivities of soil actinomycetes from southwestern China
Jiang, Y.; Li, G.; Li, Q.; Zhang, K.; Jiang, L.; Chen, X.; Jiang, C.-l.
10.1101/692814 — microbiology — Posted on 2019-07-04
3061 Long-read assembly of the Chinese rhesus macaque genome and identification of ape-specific structural variants
He, Y.; Luo, X.; Zhou, B.; Hu, T.; Meng, X.; Audano, P.; Kronenberg, Z. N.; Eichle, E. E.; Jin, J.; Guo, Y.; Yang, Y.; Qi, X.; Su, B.
10.1101/692749 — genomics — Posted on 2019-07-04
3062 Mutations in a single signaling pathway allow growth on a different solvent than water
Kampmeyer, C.; Johansen, J. V.; Holmberg, C.; Karlson, M.; Gersing, S. K.; Bordallo, H. N.; Kragelund, B. B.; Lerche, M. H.; Jourdain, I.; Winther, J. R.; Hartmann-Petersen, R.
10.1101/692889 — genetics — Posted on 2019-07-04
3063 Individual variation of the masticatory system dominates 3D skull shape in the herbivory-adapted marsupial wombats
Weisbecker, V.; Guillerme, T.; Speck, C.; Sherratt, E.; Mehari Abraha, H.; Sharp, A.; Terhune, C. E.; Collins, S.; Johnston, S.; Panagiotopoulou, O.
10.1101/692632 — evolutionary biology — Posted on 2019-07-04
3064 Evidence for mutation-order speciation between convergent ecotypes
Melo, M. C.; James, M. E.; Roda, F.; Bernal-Franco, D. M.; Wilkinson, M. J.; Liu, H.; Walter, G. M.; Ortiz-Barrientos, D.
10.1101/692673 — evolutionary biology — Posted on 2019-07-04
3066 PAWER: Protein Array Web ExploreR
Fishman, D.; Kuzmin, I.; Vilo, J.; Peterson, H.
10.1101/692905 — bioinformatics — Posted on 2019-07-04
3068 Cross-species Functional Alignment Reveals Evolutionary Hierarchy Within the Connectome
Xu, T.; Nenning, K.-H.; Schwartz, E.; Hong, S.-J.; Vogelstein, J. T.; Fair, D. A.; Schroeder, C. E.; Margulies, D. S.; Smallwood, J.; Milham, M. P.; Langs, G.
10.1101/692616 — neuroscience — Posted on 2019-07-04
3070 Novel genetic loci affecting facial shape variation in humans
Xiong, Z.; Dankova, G.; Howe, L. H.; Lee, M.; Hysi, P.; de Jong, M.; Zhu, G.; Adhikari, K.; Li, D.; Li, Y.; Pan, B.; Feingold, E.; Marazita, M.; Shaffer, J.; McAloney, K.; Xu, S.; Jin, L.; Wang, S.; Vrij, F.; Lendemeijer, B.; Richmond, S.; Zhurov, A.; Lewis, S.; Sharp, G.; Paternoster, L.; Thompson, H.; Gonzales-Jose, R.; Bortolini, M. C.; Canizales-Quinteros, S.; Gallo, C.; Poletti, G.; Bedoya, G.; Rothhammer, F.; Uitterlinden, A.; Ikram, M. A.; Wolvius, E.; Kushner, S.; Nijsten, T.; Palstra, R.-J.; Boehringer, S.; Medland, S.; Tang, K.; Ruiz-Linares, A.; Martin, N.; Spector, T.; Stergiakouli
10.1101/693002 — genomics — Posted on 2019-07-04
3071 Pangenomics reveal diversification of enzyme families and niche specialization in globally abundant SAR202 bacteria
Saw, J. H.; Nunoura, T.; Hirai, M.; Takaki, Y.; Parsons, R.; Michelsen, M.; Longnecker, K.; Kujawinski, E. B.; Stepanauskas, R.; Landry, Z.; Carlson, C. A.; Giovannoni, S. J.
10.1101/692848 — genomics — Posted on 2019-07-04
3073 YAP nuclear translocation through dynein and acetylated microtubule controls fibroblast activation.
Rhee, S.; You, E.; Ko, P.; Jeong, J.; Keum, S.; Kim, J.-W.; Seo, Y.-J.; Song, W. K.
10.1101/693168 — cell biology — Posted on 2019-07-04
3075 Deriving stratified effects from joint models investigating Gene-Environment Interactions
Laville, V.; Majarian, T.; de Vries, P. S.; Bentley, A. R.; Feitosa, M. F.; Sung, Y. J.; Rao, D.; Manning, A.; Aschard, H.; CHARGE Gene-Lifestyle Interaction Working Group,
10.1101/693218 — bioinformatics — Posted on 2019-07-04
3076 Multistage activity within a diverse set of epi-drugs against Plasmodium falciparum parasites
Coetzee, N.; von Gruning, H.; van der Watt, M.; Reader, J.; Birkholtz, L.-M.
10.1101/692913 — biochemistry — Posted on 2019-07-04
3081 CX3CL1 and CX3CR1 Expressing Tendon Cells - A novel Immune Cell Population in the Tendon Core
Lehner, C.; Spitzer, G.; Gehwolf, R.; Wagner, A.; Weissenbacher, N.; Deininger, C.; Emmanuel, K.; Wichlas, F.; Tempfer, H.; Traweger, A.
10.1101/693317 — cell biology — Posted on 2019-07-04
3083 An N-terminal motif in NLR immune receptors is functionally conserved across distantly related plant species
Adachi, H.; Contreras, M.; Harant, A.; Wu, C.-H.; Derevnina, L.; Sakai, T.; Duggan, C.; Moratto, E.; Bozkurt, T.; Maqbool, A.; Win, J.; Kamoun, S.
10.1101/693291 — plant biology — Posted on 2019-07-04
3086 Single-cell glycolytic activity regulates membrane tension 1 and HIV-1 fusion
Coomer, C. A.; Carlon-Andres, I.; Iliopoulou, M.; Dustin, M. L.; Compeer, E. B.; Compton, A. A.; Padilla-Parra, S.
10.1101/693341 — immunology — Posted on 2019-07-04
3087 Evidence for a unitary structure of spatial cognition beyond general intelligence.
Malanchini, M.; Rimfeld, K.; Shakeshaft, N. G.; McMillan, A.; Schofield, K. L.; Rodic, M.; Rossi, V.; Kovas, Y.; Dale, P. S.; Tucker-Drob, E.; Plomin, R.
10.1101/693275 — genetics — Posted on 2019-07-04
3088 Insights into protein structural, physicochemical, and functional consequences of missense variants in 1,330 disease-associated human genes
Iqbal, S.; Jespersen, J. B.; Perez-Palma, E.; May, P.; Hoksza, D.; Heyne, H. O.; Ahmed, S. S.; Rifat, Z. T.; Rahman, M. S.; Lage, K.; Palotie, A.; Cottrell, J.; Wagner, F. F.; Daly, M. J.; Campbell, A. J.; Lal, D.
10.1101/693259 — genetics — Posted on 2019-07-04
3089 Molecular mechanism for the recognition of sequence-divergent CIF peptides by the plant receptor kinases GSO1/SGN3 and GSO2.
Okuda, S.; Fujita, S.; Moretti, A.; Hohmann, U.; Gonzalez Doblas, V. G.; Ma, Y.; Pfister, A.; Brandt, B.; Geldner, N.; Hothorn, M.
10.1101/692228 — plant biology — Posted on 2019-07-04
3090 Induced and primed defence responses of Fragaria vesca to Botrytis cinerea infection
Badmi, R.; Zhang, Y.; Tengs, T.; Brurberg, M. B.; Krokene, P.; Fossdal, C. G.; Hytönen, T.; Thorstensen, T.
10.1101/692491 — plant biology — Posted on 2019-07-04
3092 Transcriptional and genomic parallels between the monoxenous parasite Herpetomonas muscarum and Leishmania
Sloan, M. A.; Brooks, K.; Otto, T. D.; Sanders, M. J.; Cotton, J. A.; Ligoxygakis, P.
10.1101/692178 — microbiology — Posted on 2019-07-04
3093 Potential impacts of insect-induced harvests in the mixed forests of New England
MacLean, M. G.; Holt, J.; Borsuk, M.; Markowski-Lindsay, M.; Butler, B.; Kittredge, D. B.; Duveneck, M.; Laflower, D.; Orwig, D. A.; Foster, D. R.; Thompson, J. R.
10.1101/692376 — ecology — Posted on 2019-07-04
3094 Colicin E1 Fragments Potentiate Antibiotics by Plugging TolC
Budiardjo, S. J.; Deay, J. J.; Calkins, A. L.; Wimalasena, V. K.; Montezano, D.; Biteen, J. S.; Slusky, J. S. G.
10.1101/692251 — biophysics — Posted on 2019-07-04
3095 In vitro ribosome synthesis and evolution through ribosome display
Hammerling, M. J.; Fritz, B. R.; Yoesep, D. J.; Kim, D. S.; Carlson, E. D.; Jewett, M. C.
10.1101/692111 — synthetic biology — Posted on 2019-07-04
3096 Rare protein-altering variants in ANGPTL7 lower intraocular pressure and protect against glaucoma
Tanigawa, Y.; Wainberg, M.; Karjalainen, J.; Kiiskinen, T.; Lemmelä, S.; Turunen, J. A.; Graham, R.; Havulinna, A. S.; Perola, M.; Palotie, A.; FinnGen, ; Daly, M. J.; Rivas, M. A.
10.1101/677443 — genetics — Posted on 2019-07-04
3098 Diffuse retro-reflective imaging for improved mosquito tracking around human baited bednets
Voloshin, V.; Kröner, C.; Seniya, C.; Murray, G. P. D.; Guy, A.; Towers, C. E.; McCall, P. J.; Towers, D. P.
10.1101/691949 — animal behavior and cognition — Posted on 2019-07-04
3101 Physiological and pathophysiological homeostasis of astroglial channel proteins by Nedd4-2
Altas, B.; Ju, A.; Solis, H. C.; Karaca, S.; Winchenbach, J.; Kaplan, O.; Schwark, M.; Wieser, G. L.; Chaugule, V. K.; Majoul, I.; Hassan, M. A.; Goel, R.; Wojcik, S. M.; Pichler, A.; Mitkovski, M.; de Hoz, L.; Urlaub, H.; Jahn, O.; Saher, G.; Rhee, J.; Kawabe, H.
10.1101/683441 — neuroscience — Posted on 2019-07-04
3102 The flagellar substrate specificity switch protein FlhB assembles onto the extra-membrane export gate to regulate type three secretion
Kuhlen, L.; Johnson, S.; Zeitler, A.; Baurle, S.; Deme, J.; Debo, R.; Fisher, J.; Wagner, S.; Lea, S.
10.1101/686782 — microbiology — Posted on 2019-07-04
3103 Tumors Exploit Dedicated Intracellular Vesicles to Program T cell Responses
Roberts, E. W.; Ruhland, M. K.; Cai, E.; Mujal, A. M.; Marchuk, K.; Beppler, C.; Nam, D.; Serwas, N. K.; Binnewies, M.; Krummel, M. F.
10.1101/691873 — immunology — Posted on 2019-07-04
3106 Mechanistic diversification of XIST regulatory network in mammals
Rosspopoff, O.; Huret, C.; Collier, A. J.; Casanova, M.; Rugg-Gunn, P. J.; Ouimette, J.-F.; Rougeulle, C.
10.1101/689430 — molecular biology — Posted on 2019-07-04
3113 Associated factors and spatial patterns of the epidemic sporotrichosis in a high density human populated area: A cross-sectional study from 2016 to 2018.
Otavio Lecca, L.; Teixeira Paiva, M.; Stefanie Fonseca de Oliveira, C.; Franco Morais, M. H.; de Azevedo, M. I.; Valgas Bastos, C.; Moura Keller, K.; Ecco, R.; Silva Alves, M. R.; Tavares Pais, G. C.; Alves Salvato, L.; de Morais Donancio Xaulim, G.; Soeiro Barbosa, D.; Tecles Brandao, S.; Ferreira Magalhaes Soares, D.
10.1101/693085 — microbiology — Posted on 2019-07-04
3115 Decision-making flexibility in New Caledonian crows, young children and adult humans in a multi-dimensional tool-use task
Miller, R.; Gruber, R.; Frohnwieser, A.; Schiestl, M.; Jelbert, S. A.; Gray, R. D.; Boeckle, M.; Taylor, A. H.; Clayton, N. S.
10.1101/693127 — animal behavior and cognition — Posted on 2019-07-04
3116 Iron-deficiency and estrogen are associated with ischemic stroke by up-regulating transferrin to induce hypercoagulability
Tang, X.; Fang, M.; Cheng, R.; Zhang, Z.; Wang, Y.; Shen, C.; Han, Y.; Lu, Q.; Du, Y.; Liu, Y.; Sun, Z.; Zhu, L.; Mwangi, J.; Xue, M.; Long, C.; Lai, R.
10.1101/646109 — biochemistry — Posted on 2019-07-04
3119 Widespread remodelling of proteome solubility in response to different protein homeostasis stresses
Sui, X.; Pires, D. E. V.; Nie, S.; Vecchi, G.; Vendruscolo, M.; Ascher, D. B.; Reid, G. E.; Hatters, D. M.
10.1101/692103 — biochemistry — Posted on 2019-07-03
3120 Molecular and structural mechanism of pan-genotypic HCV NS3/4A protease inhibition by glecaprevir
Timm, J.; Kosovrasti, K.; Henes, M.; Leidner, F.; Hou, S.; Ali, A.; Kurt-Yilmaz, N.; Schiffer, C. A.
10.1101/692392 — biochemistry — Posted on 2019-07-03
3124 Development of new food-sharing relationships among nonkin vampire bats
Carter, G. G.; Farine, D. R.; Crisp, R. J.; Vrtilek, J. K.; Ripperger, S.; Page, R.
10.1101/534321 — animal behavior and cognition — Posted on 2019-07-03
3125 Salience network atrophy links neuron type-specific degeneration to loss of empathy in frontotemporal dementia
Pasquini, L.; Nana, A.; Toller, G.; Brown, J.; Deng, J.; Staffaroni, A.; Kim, E.-J.; Hwang, J.-H.; Li, L.; Park, Y.; Gaus, S.; Allen, I.; Sturm, V.; Spina, S.; Grinberg, L.; Rankin, K.; Kramer, J.; Rosen, H.; Miller, B.; Seeley, W.
10.1101/691212 — neuroscience — Posted on 2019-07-03
3126 Light-sheet imaging and graph analysis of antidepressant action in the larval zebrafish brain network
Burgstaller, J.; Hindinger, E.; Donovan, J. C.; Dal Maschio, M.; Kist, A. M.; Gesierich, B.; Portugues, R.; Baier, H.
10.1101/618843 — neuroscience — Posted on 2019-07-03
3127 A Bayesian joint pQTL study sheds light on the genetic architecture of obesity
Ruffieux, H.; Carayol, J.; Harper, M.-E.; Dent, R.; Saris, W.; Astrup, A.; Hager, J.; Davison, A.; Valsesia, A.
10.1101/524405 — genetics — Posted on 2019-07-03
3130 Phagocytic predation by the fungivorous amoeba Protostelium aurantium targets metal ion and redox homeostasis
Radosa, S.; Sprague, J. L.; Toth, R.; Wolf, T.; Sprenger, M.; Brunke, S.; Panagiotou, G.; Linde, J.; Gacser, A.; Hillmann, F.
10.1101/690503 — microbiology — Posted on 2019-07-03
3131 The direct costs of overdiagnosed asthma in a longitudinal population-based study
Ng, B. C.; Sadatsafavi, M.; Safari, A.; Fitzgerald, J. M.; Johnson, K. M.
10.1101/409870 — epidemiology — Posted on 2019-07-03
3133 Recording temporal data onto DNA with minutes resolution
Bhan, N.; Strutz, J.; Glaser, J. I.; Kalhor, R.; Boyden, E.; Church, G. M.; Kording, K. P.; Tyo, K. E. J.
10.1101/634790 — synthetic biology — Posted on 2019-07-03
3137 Synthetic lethality screening identifies FDA-approved drugs that overcome ATP7B-mediated tolerance of tumor cells to cisplatin
Mariniello, M.; Petruzzelli, R.; Wanderlingh, L.; La Montagna, R.; Carissimo, A.; Pane, F.; Amoresano, A.; Medina, D.; Polishchuk, R.
10.1101/568535 — cancer biology — Posted on 2019-07-03
3138 Core--periphery dynamics in a plant--pollinator network
Miele, V.; Ramos-Jiliberto, R.; Vazquez, D. P.
10.1101/543637 — ecology — Posted on 2019-07-03
3139 The antibody-based delivery of interleukin-12 to solid tumors boosts NK and CD8+ T cell activity and synergizes with immune check-point inhibitors
Puca, E.; Probst, P.; Stringhini, M.; Murer, P.; Pellegrini, G.; Cazzamalli, S.; Hutmacher, C.; Gouyou, B.; Wulhfard, S.; Matasci, M.; Villa, A.; Neri, D.
10.1101/684100 — cancer biology — Posted on 2019-07-03
3141 Systematic perturbation of yeast essential genes using base editing
Despres, P. C.; Dube, A. K.; Seki, M.; Yachie, N.; Landry, C. R.
10.1101/677203 — synthetic biology — Posted on 2019-07-03
3142 Face-selective units in human ventral temporal cortex reactivate during free recall
Khuvis, S.; Yeagle, E. M.; Norman, Y.; Grossman, S.; Malach, R.; Mehta, A. D.
10.1101/487686 — neuroscience — Posted on 2019-07-03
3143 Start codon context controls translation initiation in the fungal kingdom
Wallace, E. W. J.; Maufrais, C.; Sales-Lee, J.; Tuck, L. R.; de Oliveira, L.; Feuerbach, F.; Moyrand, F.; Natarajan, P.; Madhani, H. D.; Janbon, G.
10.1101/654046 — genomics — Posted on 2019-07-03
3146 Structural basis of the differential binding of engineered knottins to integrins αVβ3 and α5β1
van Agthoven, J. F.; Shams, H.; Cochran, F. V.; Alonso, J. L.; Kintzing, J. R.; Grakami, K.; Adair, B. D.; Xiong, J.-P.; Mofrad, M. R.; Cochran, J. R.; Arnaout, M. A.
10.1101/565358 — molecular biology — Posted on 2019-07-03
3147 The common neoantigens in colorectal cancer are predicted and validated to be presented or immunogenic
Liang, Z.; Qin, L.; Chen, L.; Li, W.; Chen, C.; Huang, Y.; Zhang, L.; Liu, S.; Qiu, S.; Ge, Y.; Peng, W.; Lin, X.; Dong, X.; Zhang, X.; Li, B.
10.1101/682617 — immunology — Posted on 2019-07-03
3149 Mitochondrial network state scales mtDNA genetic dynamics
Aryaman, J.; Bowles, C.; Jones, N. S.; Johnston, I. G.
10.1101/409128 — cell biology — Posted on 2019-07-03
3150 Developing and Evaluating Mappings of ICD-10 and ICD-10-CM Codes to PheCodes
Wu, P.; Gifford, A.; Meng, X.; Li, X.; Campbell, H.; Varley, T.; Zhao, J.; Carroll, R.; Bastarache, L.; Denny, J. C.; Theodoratou, E.; Wei, W.-Q.
10.1101/462077 — bioinformatics — Posted on 2019-07-03
3156 Notch3 promotes prostate cancer-induced bone lesion development via MMP3
Ganguly, S. S.; Hostetter, G.; Tang, L.; Frank, S.; Saboda, K.; Mehra, R.; Wang, L.; Li, X.; Keller, E. T.; Miranti, C. K.
10.1101/349043 — cancer biology — Posted on 2019-07-03
3157 Divergent receptor proteins confer responses to different karrikins in two ephemeral weeds
Sun, Y. K.; Scaffidi, A.; Yao, J.; Melville, K.; Smith, S. M.; Flematti, G. R.; Waters, M. T.
10.1101/376939 — plant biology — Posted on 2019-07-03
3159 The Repertoire of Mutational Signatures in Human Cancer
Alexandrov, L.; Kim, J.; Haradhvala, N. J.; Huang, M. N.; Ng, A. W. T.; Wu, Y.; Boot, A.; Covington, K. R.; Gordenin, D. A.; Bergstrom, E.; Islam, S. M. A.; Lopez-Bigas, N.; Klimczak, L. J.; McPherson, J. R.; Morganella, S.; Sabarinathan, R.; Wheeler, D. A.; Mustonen, V.; PCAWG Mutational Signatures Working Group, ; Getz, G.; Rozen, S. G.; Stratton, M. R.
10.1101/322859 — cancer biology — Posted on 2019-07-03
3160 Bagging Improves Reproducibility of Functional Parcellation of the Human Brain
Nikolaidis, A.; Solon Heinsfeld, A.; Xu, T.; Bellec, P.; Vogelstein, J.; Milham, M.
10.1101/343392 — neuroscience — Posted on 2019-07-03
3162 Aging is associated with a systemic length-driven transcriptome imbalance
Stoeger, T.; Grant, R. A.; McQuattie-Pimentel, A. C.; Anekalla, K.; Liu, S. S.; Tejedor-Navarro, H.; Singer, B. D.; Abdala-Valencia, H.; Schwake, M.; Tetreault, M.-P.; Perlman, H.; Balch, W. E.; Chandel, N.; Ridge, K.; Sznajder, J. I.; Morimoto, R. I.; Misharin, A. V.; Budinger, G. R. S.; Nunes Amaral, L. A.
10.1101/691154 — systems biology — Posted on 2019-07-03
3163 Continuous Endoglin (CD105) Overexpression Disrupts Angiogenesis And Facilitates Tumor Cell Metastasis
Ollauri-Ibanez, C.; Nunez-Gomez, E.; Egido-Turrion, C.; Silva-Sousa, L.; Rodriguez Barbero, A.; Lopez-Novoa, J. M.; Pericacho, M.
10.1101/691824 — physiology — Posted on 2019-07-03
3164 Epigenetic signatures of chronic social stress in stress-susceptible animals
O'Toole, N.; Zhang, T.-Y.; Wen, X.; Diorio, J.; Silveira, P. P.; Labonte, B.; Nestler, E. J.; Meaney, M. J.
10.1101/690826 — neuroscience — Posted on 2019-07-03
3165 Channeling macrophage polarization by using a selective translation inhibitor
Chatterjee, S.; Waligurski, E.; Bhattacharya, B.; Yabaji, S. M.; Vallavoju, N.; Roy, S.; Brown, L. E.; Beeler, A. B.; Ivanov, A. R.; Kobzik, L.; Porco, J. A.; Kramnik, I.
10.1101/691808 — immunology — Posted on 2019-07-03
3166 Myf6/MRF4 is a Myogenic Niche Regulator Required for the Maintenance of the Muscle Stem Cell Pool
Lazure, F.; Blackburn, D. M.; Karam, N.; Sahinyan, K.; Nguyen, D.; Sharanak, A.; Corchado, A. H.; Lepper, C.; Najafabadi, H. S.; Perkins, T. J.; Jahani-Asl, A.; Soleimani, V.
10.1101/691386 — genetics — Posted on 2019-07-03
3169 DNA end-resection in highly accessible chromatin produces a toxic break
van den Berg, J.; Joosten, S. E. P.; Kim, Y.; Manjon, A. G.; Krenning, L.; Koob, L.; Feringa, F. M.; Klompmaker, R.; van den Broek, B.; Jalink, K.; Zwart, W.; Medema, R. H.
10.1101/691857 — cell biology — Posted on 2019-07-03
3170 miR-1/206 down-regulates splicing factor Srsf9 to promote myogenesis
Bjorkman, K. K.; Buvoli, M.; Pugach, E. K.; Polmear, M. M.; Leinwand, L. A.
10.1101/691162 — cell biology — Posted on 2019-07-03
3172 tappAS: A comprehensive computational framework for the analysis of the functional impact of differential splicing
de la Fuente, L.; Arzalluz-Luque, A.; del Risco, H.; Marti, C.; Tarazona, S.; Salguero, P.; Scott, R.; Alastrue-Agudo, A.; Bonilla, P.; Newman, J.; McIntyre, L.; Moreno-Manzano, V.; Conesa, A.
10.1101/690743 — bioinformatics — Posted on 2019-07-03
3173 ECHO: an Application for Detection and Analysis of Oscillators Identifies Metabolic Regulation on Genome-Wide Circadian Output
De los Santos, H.; Collins, E. J.; Mann, C.; Sagan, A. W.; Jankowski, M. S.; Bennett, K. P.; Hurley, J. M.
10.1101/690941 — bioinformatics — Posted on 2019-07-03
3174 Low level of expression of C-terminally truncated human FUS causes extensive changes in spinal cord transcriptome of asymptomatic transgenic mice
Lysikova, E. A.; Funikov, S.; Rezvykh, A. P.; Chaprov, K. D.; Kukharsky, M. S.; Ustyugov, A. A.; Deykin, A. V.; Flyamer, I. A.; Boyle, S.; Bachurin, S. O.; Ninkina, N.; Buchman, V. L.
10.1101/689414 — neuroscience — Posted on 2019-07-03
3176 A temporal record of the past with a spectrum of time constants in the monkey entorhinal cortex
Bright, I. M.; Meister, M. L. R.; Cruzado, N. A.; Tiganj, Z.; Howard, M. W.; Buffalo, E. A.
10.1101/688341 — neuroscience — Posted on 2019-07-03
3177 Presynaptic mitochondria volumes and complexity of subsynaptic distribution increase during development at a high-fidelity synapse
Thomas, C. I.; Keine, C.; Okayama, S.; Satterfield, R.; Musgrove, M.; Guerrero-Given, D.; Kamasawa, N.; Young, S. M.
10.1101/689653 — neuroscience — Posted on 2019-07-03
3180 Quantifying the RNA cap epitranscriptome reveals novel caps in cellular and viral RNA
Wang, J.; Chew, B. L. A.; Lai, Y.; Dong, H.; Xu, L.; Balamkundu, S.; Cai, W. M.; Cui, L.; Liu, C. F.; Fu, X.-Y.; Lin, Z.; Shi, P.-Y.; Lu, T. K.; Luo, D.; Jaffrey, S. R.; Dedon, P. C.
10.1101/683045 — systems biology — Posted on 2019-07-03
3182 NMR reveals light-induced changes in the dynamics of a photoswitchable fluorescent protein
Brutscher, B.; Christou, N. E.; Ayala, I.; Giandoreggio-Barranco, K.; Byrdin, M.; Adam, V.; Bourgeois, D.
10.1101/692087 — biophysics — Posted on 2019-07-03
3185 CryoFold: Ab-initio structure determination from electron density maps using molecular dynamics
Shekhar, M.; Terashi, G.; Gupta, C.; Debussche, G.; Sisco, N.; Nguyen, J.; Zook, J.; Vant, J.; Sarkar, D.; Fromme, P.; van Horn, W. D.; Dill, K.; Kihara, D.; Tajkhorshid, E.; Perez, A.; Singharoy, A.
10.1101/687087 — biophysics — Posted on 2019-07-03
3188 The epigenomic landscape regulating organogenesis in human embryos linked to developmental disorders
Gerrard, D. T.; Berry, A. A.; Jennings, R. E.; Birket, M.; Withey, S. J.; Short, P.; Jimenez-Gancedo, S.; Firbas, P.; Donaldson, I.; Sharrocks, A. D.; Piper Hanley, K.; Hurles, M. E.; Gomez-Skarmeta, J. L.; Bobola, N.; Hanley, N. A.
10.1101/691766 — genomics — Posted on 2019-07-03
3193 Maternal effects and environmental filtering shape seed fungal communities in oak trees
Fort, T.; Pauvert, C.; Zanne, A. E.; Ovaskainen, O.; Caignard, T.; Barret, M.; Compant, S.; Hampe, A.; Delzon, S.; Vacher, C.
10.1101/691121 — ecology — Posted on 2019-07-03
3197 Mechanistic insights into bacterial metabolic reprogramming from omics-integrated genome-scale models
Hadadi, N.; Pandey, V.; Chiappino-Pepe, A.; Morales, M.; Gallart-Ayala, H.; Mehl, F.; Ivanisevic, J.; Sentchilo, V.; Meer, J. v. d.
10.1101/690164 — systems biology — Posted on 2019-07-03
3198 The naive T-cell receptor repertoire has an extremely broad distribution of clone sizes
de Greef, P. C.; Oakes, T.; Gerritsen, B.; Ismail, M.; Heather, J. M.; Hermsen, R.; Chain, B.; de Boer, R. J.
10.1101/691501 — immunology — Posted on 2019-07-03
3204 Comparison of biofilm dispersal approaches in Pseudomonas aeruginosa and evaluation of dispersed cells in acute infection mouse model
Ruhal, R.; De Winter, F.; de Jonger, B.; Xavier, B. B.; Lammens, C.; Goosens, H.; Kumar SIngh, S.; Malhotra-Kumar, S.
10.1101/689646 — microbiology — Posted on 2019-07-03
3206 Dynamics and Topology of Human Transcribed Cis-regulatory Elements
Hirabayashi, S.; Bhagat, S.; Matsuki, Y.; Takegami, Y.; Uehata, T.; Kanemaru, A.; Itoh, M.; Shirakawa, K.; Takaori-Kondo, A.; Takeuchi, O.; Carninci, P.; Katayama, S.; Hayashizaki, Y.; Kere, J.; Kawaji, H.; Murakawa, Y.
10.1101/689968 — genomics — Posted on 2019-07-03
3208 Transcription factors NFIA and NFIB induce cellular differentiation high-grade astrocytoma
Chen, K.-S.; Bunt, J.; Bridges, C. R.; Lynton, Z.; Lim, J. W. C.; Stringer, B. W.; Rajagopal, R.; Wong, K.-T.; Ganesan, D.; Ariffin, H.; Day, B. W.; Richards, L. J.
10.1101/691303 — cancer biology — Posted on 2019-07-03
3209 Decreased electrocortical temporal complexity distinguishes sleep from wakefulness
Gonzalez, J.; Cavelli, M. L.; Mondino, A.; Pascovich, C.; Castro-Zaballa, S.; Torterolo, P. D.; Rubido, N.
10.1101/691006 — neuroscience — Posted on 2019-07-03
3210 A general approach to engineer positive-going eFRET voltage indicators
Abdelfattah, A. S.; Valenti, R.; Wong, A.; Koyama, M.; Douglas S. Kim, D. S.; Schreiter, E. R.
10.1101/690925 — neuroscience — Posted on 2019-07-03
3212 Y-chromosome haplotypes drive variation in size and age at maturity in male Chinook salmon
McKinney, G. J.; Seeb, J. E.; Pascal, C. E.; Schindler, D. E.; Gilk-Baumer, S. E.; Seeb, L. W.
10.1101/691063 — evolutionary biology — Posted on 2019-07-03
3213 LKB1 negatively regulates AKT1 signaling via DBC1 and TRB3
Andrabi, S.; Sarwar, Z.; Bhat, S. A.; Gillani, S. Q.; Reshi, I.; Un Nisa, M.; Adelmant, G.; Marto, J.
10.1101/691402 — cell biology — Posted on 2019-07-03
3218 Heterozygous variants in the mechanosensitive ion channel TMEM63A result in transient hypomyelination during infancy
Yan, H.; Helman, G.; Murthy, S.; Ji, H.; Crawford, J.; Kubisiak, T.; Bent, S. J.; Xiao, J.; Taft, R. J.; Coombs, A.; Wu, Y.; Pop, A.; Li, D.; de Vries, L. S.; Jiang, Y.; Salomons, G.; van der Knaap, M. S.; Patapoutian, A.; Simons, C.; Burmeister, M.; Wang, J.; Wolf, N. I.
10.1101/682179 — genomics — Posted on 2019-07-03
3221 Interictal discharges spread along local recurrent networks between tubers and surrounding cortex
Tumpa, S.; Thornton, R.; Tisdall, M.; Baldeweg, T.; Friston, K. J.; Rosch, R. E.
10.1101/691170 — neuroscience — Posted on 2019-07-03
3222 Salience network atrophy links neuron type-specific degeneration to loss of empathy in frontotemporal dementia
Pasquini, L.; Nana, A.; Toller, G.; Brown, J.; Deng, J.; Staffaroni, A.; Kim, E.-J.; Hwang, J.-H.; Li, L.; Park, Y.; Gaus, S.; Allen, I.; Sturm, V.; Spina, S.; Grinberg, L.; Rankin, K.; Kramer, J.; Rosen, H.; Miller, B.; Seeley, W.
10.1101/691212 — neuroscience — Posted on 2019-07-03
3224 The role of lipoprotein subfractions in coronary artery disease: A Mendelian randomization study
Zhao, Q.; Wang, J.; Miao, Z.; Zhang, N. R.; Hennessy, S.; Small, D. S.; Rader, D. J.
10.1101/691089 — genetics — Posted on 2019-07-03
3226 Bacterial communities of herbivores and pollinators that have co-evolved Cucurbita spp.
Shapiro, L. R.; Youngblom, M.; Scully, E. D.; Rocha, J.; Paulson, J. N.; Klepac-Ceraj, V.; Cibrian-Jaramillo, A.; Lopez-Uribe, M. M.
10.1101/691378 — ecology — Posted on 2019-07-03
3227 Loss of cyclin A2 in murine colonic epithelial cells disrupts colon homeostasis by triggering DNA damage and dysplasia and high cyclin A2 expression is a good-prognosis factor in patients with colorectal cancer
Guo, Y.; Gabola, M.; Lattanzio, R.; Paul, C.; Pinet, V.; Tang, R.; Tulari, H.; Bremond, J.; Maurizy, C.; Da Costa, Q.; Finetti, P.; Boissiere-Michot, F.; Lemmers, C.; Garnier, S.; Bertucci, F.; Azar, R.; Blanchard, J.-M.; Sicinski, P.; Mamessier, E.; Lemmers, B.; Hahne, M.
10.1101/690404 — cancer biology — Posted on 2019-07-03
3229 Ingestible Osmotic Pill for In-vivo Sampling of Gut Microbiome
Rezaei Nejad, H.; Oliveira, B. C. M.; Sadeqi, A.; Dehkharghani, A.; Kondova, I.; Langermans, J. A. M.; Guasto, J. S.; Tzipori, S.; Widmer, G.; Sonkusale, S. R.
10.1101/690982 — bioengineering — Posted on 2019-07-03
3235 Identifying maintenance hosts and risk factors for infection with Dichelobacter nodosus in free-ranging wild ruminants in Switzerland: a prevalence study
Moore-Jones, G.; Ardüser, F.; Dürr, S.; Gobeli-Brawand, S.; Zanolari, P.; Steiner, A.; Ryser-Degiorgis, M.-P.
10.1101/691600 — zoology — Posted on 2019-07-03
3241 Genome-wide Association study of facial morphology identifies novel genetic loci in Han Chinese
Huang, Y.; Li, D.; Qiao, L.; Liu, Y.; Peng, Q.; Wu, S.; Zhang, M.; Yang, Y.; Tan, J.; Xu, S.; Jin, L.; Wang, S.; Tang, K.; Grünewald, S.
10.1101/691584 — genetics — Posted on 2019-07-03
3242 A common polymorphism in the druggable ion channel PIEZO1 is associated with protection from severe malaria
Nguetse, C. N.; Purington, N.; Shakya, B.; Ebel, E. R.; Kremsner, P. G.; Velavan, T. P.; Egan, E. S.
10.1101/691253 — microbiology — Posted on 2019-07-03
3244 CRISPR interference-based platform for multimodal genetic screens in human iPSC-derived neurons
Tian, R.; Gachechiladze, M. A.; Ludwig, C. H.; Laurie, M. T.; Hong, J. Y.; Nathaniel, D.; Prabhu, A. V.; Fernandopulle, M. S.; Patel, R.; Abshari, M.; Ward, M. E.; Kampmann, M.
10.1101/513309 — cell biology — Posted on 2019-07-03
3245 Isolation of muscle stem cells from rat skeletal muscles
Boscolo Sesillo, F.; Wong, M.; Cortez, A.; Alperin, M.
10.1101/690776 — cell biology — Posted on 2019-07-03
3246 Drosophila menthol sensitivity and the Precambrian origins of TRP-dependent chemosensation
Himmel, N. J.; Letcher, J. M.; Sakurai, A.; Gray, T. R.; Benson, M. N.; Cox, D. N.
10.1101/690933 — neuroscience — Posted on 2019-07-02
3249 Transcription factor NF-κB in a basal metazoan, the sponge, has conserved and unique sequences, activities, and regulation
Williams, L. M.; Inge, M. M.; Mansfield, K. M.; Rasmussen, A.; Afghani, J.; Agrba, M.; Albert, C.; Andersson, C.; Babaei, M.; Babaei, M.; Bagdasaryants, A.; Bonilla, A.; Browne, A.; Carpenter, S.; Chen, T.; Christie, B.; Cyr, A.; Dam, K.; Dulock, N.; Erdene, G.; Esau, L.; Esonwune, S.; Hanchate, A.; Huang, X.; Jennings, T.; Kasabwala, A.; Kehoe, L.; Kobayashi, R.; Lee, M.; LeVan, A.; Liu, Y.; Murphy, E.; Nambiar, A.; Olive, M.; Patel, D.; Pavesi, F.; Petty, C.; Samofalova, Y.; Sanchez, S.; Stejskal, C.; Tang, Y.; Yapo, A.; Cleary, J. P.; Yunes, S. A.; Siggers, T.; Gilmore, T. D.
10.1101/691097 — cell biology — Posted on 2019-07-02
3250 A metagene of NRF2 expression is a prognostic biomarker in all stage colorectal cancer
O'Cathail, S.; Wu, C.-H.; Lewis, A.; Holmes, C.; Hawkins, M.; Maughan, T. S.
10.1101/690974 — cancer biology — Posted on 2019-07-02
3252 Human POT1 Unfolds G-Quadruplexes by Conformational Selection
Chaires, J. B.; Gray, R. D.; Dean, W. L.; Monson, R.; DeLeeuw, L. W.; Stribinskis, V.; Trent, J. O.
10.1101/691048 — biophysics — Posted on 2019-07-02
3253 Identification of activators of human fumarate hydratase by quantitative high-throughput screening
Zhu, H.; Lee, O. W.; Shah, P.; Jadhav, A.; Xu, X.; Patnaik, S.; Shen, M.; Hall, M. D.
10.1101/690909 — biochemistry — Posted on 2019-07-02
3254 A general strategy to develop cell permeable and fluorogenic probes for multi-colour nanoscopy
WANG, L.; Tran, M.; D Este, E.; Roberti, J.; Koch, B.; Xue, L.; Johnsson, K.
10.1101/690867 — biochemistry — Posted on 2019-07-02
3255 Critical slowing as a biomarker for seizure susceptibility
Maturana, M. I.; Meisel, C.; Dell, K.; Karoly, P. J.; D'Souza, W.; Grayden, D. B.; Burkitt, A. N.; Jiruska, P.; Kudlacek, J.; Hlinka, J.; Cook, M. J.; Kuhlmann, L.; Freestone, D. R.
10.1101/689893 — neuroscience — Posted on 2019-07-02
3256 Comprehensive Integrated Anatomical And Molecular Atlas Of Rodent Intrinsic Cardiac Nervous System
Achanta, S.; Gorky, J. M.; Leung, C.; Moss, A.; Robbins, S.; Eisenman, L.; Chen, J.; Tappan, S.; Heal, M.; Farahani, N.; Huffman, T.; Cheng, Z.; Vadigepalli, R.; Schwaber, J. S.
10.1101/661033 — neuroscience — Posted on 2019-07-02
3258 Regulation of adenylyl cyclase 5 in striatal neurons confers the ability to detect coincident neuromodulatory signals
Bruce, N. J.; Narzi, D.; Trpevski, D.; van Keulen, S. C.; Nair, A. G.; Roethlisberger, U.; Wade, R. C.; Carloni, P.; Hellgren Kotaleski, J.
10.1101/597096 — neuroscience — Posted on 2019-07-02
3263 Label-retention expansion microscopy
Shi, X.; Li, Q.; Dai, Z.; Tran, A. A.; Feng, S.; Ramirez, A. D.; Lin, Z.; Wang, X.; Chow, T. T.; Seiple, I. B.; Huang, B.
10.1101/687954 — bioengineering — Posted on 2019-07-02
3264 A neuronal signature for monogamous reunion
Scribner, J. L.; Vance, E.; Protter, D. S. W.; Saslow, E.; Cameron, R.; Klein, E.; Jimenez, J. C.; Kheirbek, M. A.; Donaldson, Z.
10.1101/675959 — neuroscience — Posted on 2019-07-02
3268 Minimal phenotyping yields GWAS hits of low specificity for major depression
Cai, N.; A. Revez, J. A.; Adams, M. J.; Andlauer, T. F. M.; Breen, G.; Byrne, E. M.; Clarke, T.-K.; Forstner, A. J. J.; Grabe, H. J. J.; Hamilton, S. P.; Levinson, D. F.; Lewis, C. M.; Lewis, G.; Martin, N. G.; Milaneschi, Y.; Mors, O.; Muller-Myhsok, B.; Penninx, B. W. W. J. H.; Perlis, R. H.; Pistis, G.; Potash, J. B.; Preisig, M.; Shi, J.; Smoller, J. W.; Streit, F.; Tiemeier, H.; Uher, R.; Van der Auwera, S.; Viktorin, A.; Weissman, M. M.; MDD Working Group of the Psychiatric Genomics Cons, ; Kendler, K. S.; Flint, J.
10.1101/440735 — genetics — Posted on 2019-07-02
3272 Molecular and cellular correlates of human nerve regeneration: ADCYAP1 encoding PACAP enhances sensory neuron outgrowth
Schmid, A. B.; Baskozos, G.; Windsor, K.; Karlsson, P.; Sandy-Hindmarch, O.; Weir, G. A.; McDermott, L. A.; Clark, A. J.; Burchall, J.; Wiberg, A.; Furniss, D.; Bennett, D. L.
10.1101/686618 — neuroscience — Posted on 2019-07-02
3274 The origin of the Gravettians: genomic evidence from a 36,000-year-old Eastern European
Bennett, E. A.; Prat, S.; Pean, S.; Crepin, L.; Yanevich, A.; Puaud, S.; Grange, T.; Geigl, E.-M.
10.1101/685404 — genetics — Posted on 2019-07-02
3275 Cardiac contraction velocity has evolved to match heart rate with body size through variation in β-cardiac myosin sequence.
Johnson, C. A.; McGreig, J. E.; Vera, C. D.; Mulvihill, D. P.; Ridout, M.; LEINWAND, L. A.; Wass, M. N.; Geeves, M. A.
10.1101/680413 — biochemistry — Posted on 2019-07-02
3277 DNA sequence differences are determinants of meiotic recombination outcome
Brown, S. D.; Mpaulo, S. J.; Asogwa, M. N.; Jezequel, M.; Whitby, M. C.; Lorenz, A.
10.1101/568543 — genetics — Posted on 2019-07-02
3278 More than a flying syringe: Using functional traits in vector borne disease research
Cator, L.; Johnson, L. R.; Mordecai, E. A.; El Moustaid, F.; Smallwood, T.; La Deau, S.; Johansson, M.; Hudson, P. J.; Boots, M.; Thomas, M. B.; Power, A. G.; Pawar, S.
10.1101/501320 — ecology — Posted on 2019-07-02
3281 PPARβ/δ recruits NCOR and regulates transcription reinitiation
Legrand, N.; Bretscher, C. L.; Zielke, S.; Wilke, B.; Daude, M.; Fritz, B.; Diederich, W. E.; Adhikary, T.
10.1101/525576 — molecular biology — Posted on 2019-07-02
3286 Developmental exposure to pesticide contaminated food impedes bumblebee brain growth predisposing adults to become poorer learners
Smith, D. B.; Arce, A. N.; Ramos Rodrigues, A. M.; Bischoff, P. H.; Burris, D.; Ahmed, F.; Gill, R. J.
10.1101/690602 — ecology — Posted on 2019-07-02
3288 Histone H2AK119 Mono-Ubiquitination is Essential for Polycomb-Mediated Transcriptional Repression
Tamburri, S.; Lavarone, E.; Fernandez-Perez, D.; Zanotti, M.; Manganaro, D.; Conway, E.; Pasini, D.
10.1101/690461 — molecular biology — Posted on 2019-07-02
3289 Air-interfaced colonization model suggests a commensal-like interaction of Neisseria meningitidis with the epithelium, which benefit from colonization by Streptococcus mitis.
Audry, M.; Robbe-Masselot, C.; Barnier, J.-P.; Gachet, B.; Saubamea, B.; Schmitt, A.; Schonherr-Hellec, S.; Leonard, R.; Nassif, X.; Coureuil, M.
10.1101/690610 — microbiology — Posted on 2019-07-02
3290 Characterizing RNA stability genome-wide through combined analysis of PRO-seq and RNA-seq data
Blumberg, A.; Zhao, Y.; Huang, Y.-F.; Dukler, N.; Rice, E. J.; Krumholz, K.; Danko, C. G.; Siepel, A.
10.1101/690644 — genomics — Posted on 2019-07-02
3291 Altitude and life-history shape the evolution of Heliconius wings
Montejo-Kovacevich, G.; Smith, J. E.; Meier, J.; Bacquet, C. N.; Whiltshire-Romero, E.; Nadeau, N. J.; Jiggins, C.
10.1101/690396 — evolutionary biology — Posted on 2019-07-02
3293 Observing changes in human functioning during induced sleep deficiency and recovery periods
Ochab, J. K.; Szwed, J.; Oles, K.; Beres, A.; Chialvo, D.; Domagalik, A.; Fafrowicz, M.; Gudowska-Nowak, E.; Marek, T.; Nowak, M. A.; Oginska, H.
10.1101/690313 — neuroscience — Posted on 2019-07-02
3295 Parkinson’s disease-associated alterations of the gut microbiome can invoke disease-relevant metabolic changes
Baldini, F.; Hertel, J.; Sandt, E.; Thinnes, C.; Neuberger-Castillo, L.; Pavelka, L.; Betsou, F.; Krueger, R.; Thiele, I.
10.1101/691030 — microbiology — Posted on 2019-07-02
3296 Oomycete small RNAs invade the plant RNA-induced silencing complex for virulence
Dunker, F.; Trutzenberg, A.; Rothenpieler, J. S.; Kuhn, S.; Pröls, R.; Schreiber, T.; Tissier, A.; Hückelhoven, R.; Weiberg, A.
10.1101/689190 — microbiology — Posted on 2019-07-02
3297 Phagocytic predation by the fungivorous amoeba Protostelium aurantium targets metal ion and redox homeostasis
Radosa, S.; Sprague, J. L.; Toth, R.; Wolf, T.; Sprenger, M.; Brunke, S.; Panagiotou, G.; Linde, J.; Gacser, A.; Hillmann, F.
10.1101/690503 — microbiology — Posted on 2019-07-02
3298 The Drosophila fertility factor kl-3 is linked to the Y-chromosome of the vector of Chagas’ disease Triatoma infestans (Hemiptera: Reduviidae) and is essential for male fertility
Martins, C. H.; Silva, R. S. V. P.; Ferreira, T. K.; Paim, R.; Pessoa, G. C. D.; Sant'Anna, M. V.; Araujo, R. N.; Gontijo, N. F.; Pereira, M. H.; Carvalho, A. B.; KOERICH, L.
10.1101/690370 — genomics — Posted on 2019-07-02
3300 Meiotic drive reduces egg-to-adult viability in stalk-eyed flies
Finnegan, S. R.; White, N. J.; Koh, D.; Camus, M. F.; Fowler, K.; Pomiankowski, A.
10.1101/690321 — evolutionary biology — Posted on 2019-07-02
3301 A novel multidimensional reinforcement task in mice elucidates sex-specific behavioral strategies
Kutlu, M. G.; Zachry, J. E.; Brady, L. J.; Melugin, P. R.; Sanders, C.; Tat, J.; Johnson, A. R.; Thibeault, K.; Lopez, A. J.; Calipari, E. S.
10.1101/690750 — animal behavior and cognition — Posted on 2019-07-02
3306 Early life maturation of human visual system white matter is altered by monocular enucleation
Dunkley, B. T.; Vandewouw, M.; Chakraborty, A.; Taylor, M. J.; Gallie, B.; McCulloch, D. L.; Thompson, B.
10.1101/690701 — neuroscience — Posted on 2019-07-02
3308 Cryptic role of tetrathionate in the sulfur cycle: A study from Arabian Sea oxygen minimum zone sediments
Mandal, S.; Bhattacharya, S.; Roy, C.; Rameez, M. J.; Sarkar, J.; Fernandes, S.; Mapder, T.; Peketi, A.; Mazumdar, A.; Ghosh, W.
10.1101/686469 — microbiology — Posted on 2019-07-02
3309 HNF1A recruits UTX to activate a differentiation program that suppresses pancreatic cancer
Kalisz, M.; Bernardo, E.; Beucher, A.; Maestro, M. A.; del Pozo, N.; Millan Crespo, I.; Haeberle, L.; Schlensog, M.; Safi, S. A.; Knoefel, W. T.; Grau, V.; de Vas, M.; Shpargel, K.; Vaquero, E.; Magnuson, T.; Ortega, S.; Esposito, I.; Real, F.; Ferrer, J.
10.1101/690552 — genomics — Posted on 2019-07-02
3310 uap: Reproducible and Robust HTS Data Analysis
Kämpf, C.; Specht, M.; Scholz, A.; Puppel, S.-H.; Doose, G.; Reiche, K.; Schor, J.; Hackermüller, J.
10.1101/690438 — bioinformatics — Posted on 2019-07-02
3311 Loss of adaptive capacity in asthmatics revealed by biomarker fluctuation dynamics on experimental rhinovirus challenge
Sinha, A.; Binbin, X.; Lutter, R.; Dekker, T.; Dierdorp, B.; Sterk, P. J.; Frey, U.; Eckert, E. D.
10.1101/684910 — physiology — Posted on 2019-07-02
3312 Molecular Profiling to Infer Neuronal Cell Identity: Lessons from small ganglia of the Crab Cancer borealis
Northcutt, A. J.; Kick, D. R.; Otopalik, A. G.; Goetz, B. M.; Harris, R. M.; Santin, J. M.; Hofmann, H. A.; Marder, E.; Schulz, D.
10.1101/690388 — neuroscience — Posted on 2019-07-02
3313 Druggable genome screen identifies new regulators of the abundance and toxicity of ATXN3, the Spinocerebellar Ataxia Type 3 disease protein
Ashraf, N. S.; Sutton, J. R.; Yang, Y.; Ranxhi, B.; Libohova, K.; Shaw, E. D.; Barget, A. J.; Todi, S. V.; Paulson, H. L.; Costa, M. d. C.
10.1101/690818 — neuroscience — Posted on 2019-07-02
3314 Phylogenomic analysis reveals the basis of adaptation of Pseudorhizobium species to extreme environments
Lassalle, F.; Dastgheib, S. M. M.; Zhao, F.-J.; Zhang, J.; Verbarg, S.; Fruhling, A.; Brinkmann, H.; Osborne, T. H.; Sikorski, J.; Balloux, F.; Didelot, X.; Santini, J. M.; Petersen, J.
10.1101/690347 — microbiology — Posted on 2019-07-02
3315 Generalist Eimeria species in rodents: multilocus analyses indicate inadequate resolution of established markers
Jarquin-Diaz, V. H.; Balard, A.; Macova, A.; Jost, J.; Roth von Szepesbela, T.; Berktold, K.; Tank, S.; Kvicerova, J.; Heitlinger, E.
10.1101/690487 — microbiology — Posted on 2019-07-02
3316 A missense variant in CREBRF is associated with taller stature in Samoans
Carlson, J. C.; Rosenthal, S. L.; Russell, E. M.; Hawley, N. L.; Sun, G.; Cheng, H.; Naseri, T.; Reupena, M. S.; Tuitele, J.; Deka, R.; McGarvey, S. T.; Weeks, D. E.; Minster, R. L.
10.1101/690586 — genetics — Posted on 2019-07-02
3319 Cyclin-dependent-like kinase 5 is required for pain signalling in both human neurons and mouse models
La Montanara, P.; Hervera Abad, A.; Baltussen, L.; Palmisano, I.; De Virgiliis, F.; Gao, Y.; Qasim, K.; Gorgoraptis, N.; Wong, K.; Downs, J.; Di Lazzaro, V.; Pizzorusso, T.; Ultanir, S.; Leonard, H.; Nagy, I.; Mazarakis, N.; Di Giovanni, S.
10.1101/690172 — neuroscience — Posted on 2019-07-02
3321 Loss of function from widely distributed, synonymous mutations at single codons
Gupta, K.; Prabha, J.; Chandra, S.; Khare, S.; Mohan, S. V.; Kohli, P.; Asok, A.; Gowda, H.; Ramesh, A.; Varadarajan, R.
10.1101/684092 — molecular biology — Posted on 2019-07-02
3325 Modulation of RNA condensation by the eIF4A RNA helicase
Tauber, D.; Tauber, G.; Khong, A.; Van Treeck, B.; Pelletier, J.; Parker, R.
10.1101/689802 — biochemistry — Posted on 2019-07-02
3326 Cannabidiol attenuates seizures and EEG abnormalities in Angelman syndrome model mice
Gu, B.; Zhu, M.; Glass, M. R.; Rougie, M.; Nikolova, V. D.; Moy, S. S.; Carney, P. R.; Philpot, B. D.
10.1101/689943 — pharmacology and toxicology — Posted on 2019-07-02
3327 Risk of Seizures Induced by Intracranial Research Stimulation: Analysis of 770 Stimulation Sessions
Goldstein, H.; Smith, E.; Gross, R. E.; Jobst, B. C.; Lega, B. C.; Sperling, M. R.; Worrell, G. A.; Zaghloul, K. A.; Wanda, P. A.; Kahana, M. J.; Rizzuto, D. S.; Schevon, C. A.; McKhann, G. M.; Sheth, S. A.
10.1101/688119 — neuroscience — Posted on 2019-07-02
3328 Abcg2-Expressing Side Population Cells Contribute to Cardiomyocyte Renewal through Fusion
van Berlo, J. H.; Yellamilli, A.; Ren, Y.; McElmurry, R. T.; Lambert, J. P.; Gross, P.; Mohsin, S.; Houser, S. R.; Elrod, J. W.; Tolar, J.; Garry, D.
10.1101/690339 — cell biology — Posted on 2019-07-02
3334 Lateral organ diversification in plants mediated by the ALOG protein family of transcription factors
Naramoto, S.; Jones, V. A. S.; Trozzi, N.; Sato, M.; Toyooka, K.; Shimamura, M.; Ishida, S.; Nishitani, K.; Ishizaki, K.; Nishihama, R.; Kohchi, T.; Dolan, L.; Kyozuka, J.
10.1101/689109 — plant biology — Posted on 2019-07-02
3335 Deficiency in Bhlhe40 impairs resistance to H. polygyrus bakeri and reveals novel Csf2rb-dependent regulation of anti-helminth immunity
Jarjour, N. N.; Bradstreet, T. R.; Schwarzkopf, E. A.; Cook, M. E.; Lai, C.-W.; Huang, S. C.-C.; Taneja, R.; Stappenbeck, T. S.; Van Dyken, S. J.; Urban, J. F.; Edelson, B. T.
10.1101/687541 — immunology — Posted on 2019-07-02
3336 In silico karyotyping of chromosomally polymorphic malaria mosquitoes in the Anopheles gambiae complex
Love, R. R.; Redmond, S. N.; Pombi, M.; Caputo, B.; Petrarca, V.; della Torre, A.; The Anopheles gambiae 1000 Genomes Consortium, ; Besansky, N. J.
10.1101/687566 — genomics — Posted on 2019-07-02
3337 Bayesian-Maximum-Entropy reweighting of IDPs ensembles based on NMR chemical shifts
Crehuet, R.; Buigues Jorro, P. J.; Lindorff-Larsen, K.; Salvatella, X.
10.1101/689083 — biophysics — Posted on 2019-07-02
3338 Metal bridge in S4 segment supports helix transition in Shaker channel
Bassetto, C. A. Z.; Carvalho-de-Souza, J. L.; Bezanilla, F.
10.1101/689620 — biophysics — Posted on 2019-07-02
3340 Type I interferons are important co-stimulatory signals during T cell receptor mediated MAIT cell activation
Lamichhane, R.; Galvin, H.; Hannaway, R. F.; de la Harpe, S. M.; Munro, F.; Tyndall, J. D.; Vernall, A. J.; McCall, J. L.; Husain, M.; Ussher, J. E.
10.1101/686170 — immunology — Posted on 2019-07-02
3341 HIV infection does not alter Interferon α/β receptor expression on mucosal immune cells
Ickler, J.; Francois, S.; Widera, M.; Santiago, M. L.; Dittmer, U.; Sutter, K.
10.1101/688440 — immunology — Posted on 2019-07-02
3342 TRIBES: A user-friendly pipeline for relatedness detection and disease gene discovery
Twine, N. A.; Szul, P.; Henden, L.; McCann, E. P.; Blair, I. P.; Williams, K. L.; Bauer, D. C.
10.1101/686253 — bioinformatics — Posted on 2019-07-02
3343 Realistic modeling of ephaptic fields in the human brain
Ruffini, G.; Salvador, R.; Tadayon, E.; Sanchez-Todo, R.; Pascual-Leone, A.; Santarnecchi, E.
10.1101/688101 — neuroscience — Posted on 2019-07-02
3347 Novel anti-somatostatin receptor 2 antibody-drug conjugate for neuroendocrine cancer therapy
Si, Y.; Guenter, R.; Ou, J.; Kim, S.; Ernst, P.; Carter, A. M.; Bibb, J. A.; Markert, J. M.; Jaskula-Sztul, R.; Zhou, L.; Chen, H.; Liu, X.
10.1101/688184 — bioengineering — Posted on 2019-07-02
3348 Lake overturn as a key driver for methane oxidation
Zimmermann, M.; Mayre, M.; Bouffard, D.; Eugster, W.; Steinsberger, T.; Wehrli, B.; Brand, A.; Buergmann, H.
10.1101/689182 — microbiology — Posted on 2019-07-02
3352 Completing Linnaeus’s Inventory of the Swedish Insect Fauna: Only 5000 Species Left
Ronquist, F.; Forshage, M.; Haggqvist, S.; Karlsson, D.; Hovmoller, R.; Bergsten, J.; Holston, K.; Britton, T.; Abenius, J.; Andersson, B.; Buhl, P. N.; Coulianos, C.-C.; Fjellberg, A.; Gertsson, C.-A.; Hellqvist, S.; Jaschhof, M.; Kjaerandsen, J.; Klopfstein, S.; Kobro, S.; Liston, A.; Meier, R.; Pollet, M.; Prous, M.; Riedel, M.; Rohacek, J.; Schuppenhauer, M.; Stigenberg, J.; Struwe, I.; Taeger, A.; Ulefors, S.-O.; Varga, O.; Withers, P.; Gardenfors, U.
10.1101/687392 — ecology — Posted on 2019-07-02
3354 Independent evolution of polymerization in the Actin ATPase clan regulates hexokinase activity
Stoddard, P. R.; Lynch, E. M.; Farrell, D. P.; Justman, Q. A.; Dosey, A. M.; DiMaio, F.; Williams, T. A.; Kollman, J. M.; Murray, A. W.; Garner, E. C.
10.1101/686915 — biochemistry — Posted on 2019-07-02
3355 Kinetic study of the expression of genes related to hepatic steatosis, global intermediate metabolism and cellular stress during overfeeding in mule ducks
Pioche, T.; Skiba, F.; Bernadet, M.-D.; Seiliez, I.; Massimino, W.; Houssier, M.; Tavernier, A.; Ricaud, K.; Davail, S.; Skiba-Cassy, S.; Gontier, K.
10.1101/690156 — physiology — Posted on 2019-07-02
3359 Evidence that inconsistent gene prediction can mislead analysis of algal genomes
Chen, Y.; Stephens, T. G.; Bhattacharya, D.; Gonzalez-Pech, R. A.; Chan, C. X.
10.1101/690040 — genomics — Posted on 2019-07-02
3362 Large herbivores strongly slow down litter decomposition in temperate forests
Chollet, S.; Maillard, M.; Schorghuber, J.; Grayston, S.; Martin, J.-L.
10.1101/690032 — ecology — Posted on 2019-07-02
3369 Hepatitis E as a cause of adult hospitalization in Bangladesh: Results from an acute jaundice surveillance study in six tertiary hospitals, 2014-2017
Paul, R.; Nazneen, A.; Banik, K. C.; Sumon, S. A.; Paul, K. K.; Akram, A.; Uzzaman, M. S.; Iqbal, T.; Tejada-Strop, A.; Kamili, S.; Luby, S. P.; Gidding, H. F.; Hayen, A.; Gurley, E. S.
10.1101/688721 — scientific communication and education — Posted on 2019-07-02
3370 ELQ-331 as a prototype for extremely durable chemoprotection against malaria
Smilkstein, M. J.; Pou, S.; Krollenbrock, A.; Bleyle, L. A.; Dodean, R. A.; Frueh, L.; Hinrichs, D. J.; Li, Y.; Martinson, T.; Munar, M. Y.; Winter, R. W.; Bruzual, I.; Whiteside, S.; Nilsen, A.; Koop, D. R.; Kelly, J. X.; Kappe, S. H. I.; Wilder, B. K.; Riscoe, M. K.
10.1101/687756 — pharmacology and toxicology — Posted on 2019-07-02
3373 Precision of auditory responses deteriorates on the way to frontal cortical areas
Lopez Jury, L.; Mannel, A.; Garcia-Rosales, F.; Hechavarria, J. C.
10.1101/688549 — neuroscience — Posted on 2019-07-02
3375 Energetic and Environmental Constraints on the Community Structure of Benthic Microbial Mats in Lake Fryxell, Antarctica
Dillon, M.; Hawes, I.; Jungblut, A. D.; Mackey, T. J.; Eisen, J. A.; Doran, P.; Sumner, D. Y.
10.1101/687103 — microbiology — Posted on 2019-07-02
3376 Outwitting planarians antibacterial defence mechanisms: Rickettsiales bacterial trans-infection from Paramecium multimicronucleatum to planarians
Modeo, L.; Salvetti, A.; Rossi, L.; Castelli, M.; Szokoli, F.; Krenek, S.; Sabaneyeva, E.; Di Giuseppe, G.; Fokin, S. I.; Verni, F.; Petroni, G.
10.1101/688770 — microbiology — Posted on 2019-07-02
3377 Structure-function analysis of the Escherichia coli β-barrel assembly enhancing protease BepA suggests a role for a self-inhibitory state
Bryant, J.; Cadby, I. T.; Chong, Z.-S.; Sevastsyanovich, Y.; Morris, F.; Cunningham, A. F.; Kritikos, G.; Meek, R. W.; Banzhaf, M.; Chng, S.-S.; Henderson, I.; Lovering, A. L.
10.1101/689117 — microbiology — Posted on 2019-07-02
3379 High-throughput phenotyping reveals expansive genetic and structural underpinnings of immune variation
Abeler-Dörner, L.; Laing, A.; Lorenc, A.; Ushakov, D. S.; Clare, S.; Speak, A.; Duque, M.; White, J. K.; Ramirez-Solis, R.; Saran, N.; Bull, K. R.; Moron, B.; Iwasaki, J.; Barton, P. R.; Caetano, S.; Hng, K. I.; Cambridge, E.; Forman, S.; Crockford, T. L.; Griffiths, M.; Kane, L.; Harcourt, K.; Brandt, C.; Notley, G.; Babalola, K. O.; Warren, J.; Mason, J. C.; Meeniga, A.; Karp, N. A.; Melvin, D.; Cawthorne, E.; Weinrick, B.; Rahim, A.; Drissler, S.; Meskas, J.; Yue, A.; Lux, M.; Song-Zhao, G.; Chan, A.; Ballesteros Reviriego, C.; Abeler, J.; Wilson, H.; Przemska-Kosicka, A.; Edmans, M.; Stre
10.1101/688010 — immunology — Posted on 2019-07-02
3383 CryoFold: Ab-initio structure determination from electron density maps using molecular dynamics
Shekhar, M.; Terashi, G.; Gupta, C.; Debussche, G.; Sisco, N.; Nguyen, J.; Zook, J.; Vant, J.; Sarkar, D.; Fromme, P.; van Horn, W. D.; Dill, K.; Kihara, D.; Tajkhorshid, E.; Perez, A.; Singharoy, A.
10.1101/687087 — biophysics — Posted on 2019-07-02
3388 The Medicago truncatula Vacuolar Iron Transporter-Like proteins VTL4 and VTL8 deliver iron to endosymbiotic bacteria at different stages of the infection process
Walton, J. H.; Kontra-Kovats, G.; Green, R. T.; Domonkos, A.; Horvath, B.; Brear, E. M.; Franceschetti, M.; Kalo, P.; Balk, J.
10.1101/689224 — plant biology — Posted on 2019-07-02
3390 Lymph Nodes Inhibit T-cell Effector Functions Locally by Establishing Acidic Niches
Wu, H.; Estrella, V.; Enriquez-Navas, P.; El-Kenawi, A.; Russell, S.; Abrahams, D.; Ibrahim-Hashim, A.; Longo, D.; Reshetnyak, Y.; Luddy, K.; Damaghi, M.; Pillai, S. R.; Beatty, M.; Pilon-Thomas, S.; Swietach, P.; gillies, r.
10.1101/689604 — physiology — Posted on 2019-07-02
3392 Linking alpha oscillations, attention and inhibitory control in adult ADHD with EEG neurofeedback
Deiber, M.-P.; Hasler, R.; Colin, J.; Dayer, A.; Aubry, J.-M.; Baggio, S.; Perroud, N.; Ros, T.
10.1101/689398 — neuroscience — Posted on 2019-07-02
3396 Chitin is present within the Ampullae of Lorenzini of chondrichthyan fishes
Phillips, M.; Tang, W. J.; Hassan, K.; Ocampo Daza, D.; Kaya, M.; Sargn, I.; Amemiya, C. T.
10.1101/687301 — molecular biology — Posted on 2019-07-02
3397 A rapidly evolving polybasic motif modulates bacterial detection by guanylate binding proteins
Kohler, K. M.; Kutsch, M.; Piro, A. S.; Wallace, G.; Coers, J.; Barber, M. F.
10.1101/689554 — microbiology — Posted on 2019-07-02
3398 NEIL2 plays a critical role in limiting inflammation and preserving genomic integrity in H. pylori-infected gastric epithelial cells
Sahan, A. Z.; Venkova, T.; Sayed, I. M.; Beswick, E.; Reyes, V.; Pinchuk, I.; Sahoo, D.; Ghosh, P.; Hazra, T. K.; Das, S.
10.1101/687962 — microbiology — Posted on 2019-07-02
3399 Structure and functional analysis of the Legionella chitinase ChiA reveals a novel mechanism of metal-dependent mucin degradation
Richardson, K.; Grigoryeva, L.; Corsini, P.; White, R.; Shaw, R.; Portlock, T.; Dorgan, B.; Fornili, A.; Cianciotto, N.; Garnett, J.
10.1101/687871 — microbiology — Posted on 2019-07-02
3402 Histone methyltransferase MMSET/NSD2 is essential for generation of B1 cell compartment in mice
Dobenecker, M.-W.; Yurchenko, V.; Marcello, J.; Becker, A.; Rudensky, E.; Bahnu, N.; Carrol, T.; Garcia, B.; Rosenberg, B.; Prinjha, R.; Tarakhovsky, A.
10.1101/687806 — immunology — Posted on 2019-07-02
3403 Highly Efficient, Massively-Parallel Single-Cell RNA-Seq Reveals Cellular States and Molecular Features of Human Skin Pathology
Hughes, T. K.; Wadsworth, M. H.; Gierahn, T. M.; Do, T.; Weiss, D.; Andrade, P. R.; Ma, F.; de Andrade Silva, B. J.; Shao, S.; Tsoi, L. C.; Ordovas-Montanes, J.; Gudjonsson, J. E.; Modlin, R. L.; Love, J. C.; Shalek, A. K.
10.1101/689273 — immunology — Posted on 2019-07-02
3404 Coexpression of CCR7 and CXCR4 during B cell development controls CXCR4 responsiveness and bone marrow homing.
Mcheik, S.; Van Eeckhout, N.; Depoorter, C.; Gales, C.; Parmentier, M.; Springael, J.-Y.
10.1101/689372 — immunology — Posted on 2019-07-02
3407 Epstein Barr virus genomes reveal population structure and type 1 association with endemic Burkitt lymphoma
Kaymaz, Y.; Oduor, C. I.; Aydemir, O.; Luftig, M. A.; Otieno, J. A.; Ong'echa, J. M.; Bailey, J. A.; Moormann, A. M.
10.1101/689216 — genomics — Posted on 2019-07-02
3409 Unraveling the hexaploid sweetpotato inheritance using ultra-dense multilocus mapping
Mollinari, M.; Olukolu, B. A.; Da Silva Pereira, G.; Khan, A.; Gemenet, D. C.; Yencho, G. C.; Zeng, Z.-B.
10.1101/689638 — genetics — Posted on 2019-07-02
3410 notum1, acting downstream of pitx2, is essential for proper eye and craniofacial development.
Hendee, K. E.; Sorokina, E. A.; Muheisen, S.; Collery, R. F.; Semina, E. V.
10.1101/687798 — genetics — Posted on 2019-07-02
3413 Evolutionary decomposition of genetic effects
Liu, L.; Liu, M.; Zhang, D.; Deng, S.; Chen, P.; Yang, J.; Xie, Y.; He, X.
10.1101/688358 — genetics — Posted on 2019-07-02
3416 A popular Indian clove-based mosquito repellent is a false economy
Tan, K.; Faierstein, G.; Xu, P.; Barbosa, R.; Buss, G.; Leal, W.
10.1101/689836 — ecology — Posted on 2019-07-02
3419 Organic farming expansion drives natural enemy abundance not diversity in agricultural landscapes
Muneret, L.; Auriol, A.; Bonnard, O.; Richart-Cervera, S.; Thiery, D.; Rusch, A.
10.1101/688481 — ecology — Posted on 2019-07-02
3420 Bad and good news for ash trees in Europe: alien pest Agrilus planipennis has spread to the Ukraine and the south of European Russia, but does not kill Fraxinus excelsior in the forests
Orlova-Bienkowskaja, M. J.; Drogvalenko, A. N.; Zabaluev, I. A.; Sazhnev, A. S.; Peregudova, E. Y.; Mazurov, S. G.; Komarov, E. V.; Bienkowski, A. O.
10.1101/689240 — ecology — Posted on 2019-07-02
3422 Predicting Primary Site of Secondary Liver Cancer with a Neural Estimator of Metastatic Origin (NEMO)
Schau, G. F.; Burlingame, E. A.; Thibault, G.; Anekpuritanang, T.; Wang, Y.; Gray, J. W.; Corless, C.; Chang, Y. H.
10.1101/689828 — cancer biology — Posted on 2019-07-02
3424 DolphinNext: A distributed data processing platform for high throughput genomics
Yukselen, O.; Turkyilmaz, O.; Ozturk, A.; Garber, M.; Kucukural, A.
10.1101/689539 — bioinformatics — Posted on 2019-07-02
3425 A database for ITS2 sequences from nematodes
Workentine, M. L.; Chen, R.; Zhu, S.; Gavriliuc, S.; Shaw, N.; de Rijke, J.; Redman, E. M.; Avarmenko, R. W.; Wit, J.; Poissant, J.; Gilleard, J. S.
10.1101/689695 — bioinformatics — Posted on 2019-07-02
3427 Independent Control of the Thermodynamic and Kinetic Properties of Aptamer Switches
Wilson, B. D.; Hariri, A. A.; Thompson, I. A. P.; Eisenstein, M.; Soh, H. T.
10.1101/688275 — bioengineering — Posted on 2019-07-02
3431 Exploitation of local and global information in predictive processing
Kluger, D. S.; Broers, N.; Roehe, M. A.; Wurm, M. F.; Busch, N. A.; Schubotz, R. I.
10.1101/687673 — neuroscience — Posted on 2019-07-02
3432 Consciousness & Brain Functional Complexity in Propofol Anaesthesia
Varley, T.; Luppi, A.; Pappas, I.; Naci, L.; Adapa, R.; Owen, A.; Menon, D.; Stamatakis, E.
10.1101/680447 — neuroscience — Posted on 2019-07-02
3433 Neuronal responses in posterior parietal cortex during learning of implied serial order
Munoz, F.; Jensen, G.; Kennedy, B. C.; Alkan, Y.; Terrace, H. S.; Ferrera, V. P.
10.1101/689133 — neuroscience — Posted on 2019-07-02
3435 State-specific gating of salient cues by midbrain dopaminergic input to basal amygdala
Lutas, A.; Kucukdereli, H.; Alturkistani, O.; Carty, C.; Sugden, A.; Fernando, K.; Diaz, V.; Flores-Maldonado, V.; Andermann, M.
10.1101/687707 — neuroscience — Posted on 2019-07-02
3438 The potential for polyphosphate metabolism in Archaea and anaerobic polyphosphate formation in Methanosarcina mazei.
Paula, F. S.; Chin, J.; Schnurer, A.; Muller, B.; Manesiotis, P.; Waters, N.; Macintosh, K. A.; Quinn, J. P.; Connolly, J.; Abram, F.; McGrath, J.; O'Flaherty, V.
10.1101/689885 — microbiology — Posted on 2019-07-02
3439 Leveraging peptide substrate libraries to design inhibitors of bacterial Lon protease
Babin, B. M.; Kasperkiewicz, P.; Janiszewski, T.; Yoo, E.; Drag, M.; Bogyo, M.
10.1101/689877 — microbiology — Posted on 2019-07-02
3441 Genomic risk score offers predictive performance comparable to clinical risk factors for ischaemic stroke
Abraham, G.; Malik, R.; Yonova-Doing, E.; Salim, A.; Wang, T.; Danesh, J.; Butterworth, A.; Howson, J.; Inouye, M.; Dichgans, M.
10.1101/689935 — genomics — Posted on 2019-07-02
3443 Extraction of common task features in EEG-fMRI data using coupled tensor-tensor decomposition
Jonmohamadi, Y.; Muthukumaraswamy, S.; Chen, J.; Roberts, J.; Crowford, R.; Pandey, A.
10.1101/685941 — bioinformatics — Posted on 2019-07-02
3445 Depression, GABA and age correlate with the plasma levels of inflammatory markers.
Bhandage, A. K.; Cunningham, J. L.; Jin, Z.; Shhen, Q.; Bongiovanni, S.; Korol, S. V.; Syk, M.; Kamali-Moghaddam, M.; Ekselius, L.; Birnir, B.
10.1101/689984 — pathology — Posted on 2019-07-02
3449 Dendritic speeding of synaptic potentials in an auditory brainstem principal neuron
Srinivasan, G.; Dagostin, A.; Leao, R. N.; Balakrishnan, V.; Holcomb, P.; Jackson, D.; Spirou, G.; von Gersdorff, H.
10.1101/688309 — neuroscience — Posted on 2019-07-02
3454 Critical slowing as a biomarker for seizure susceptibility
Maturana, M.; Meisel, C.; Dell, K.; Karoly, P. J.; D'Souza, W.; Grayden, D. B.; Burkitt, A. N.; Jiruska, P.; Kudlacek, j.; Hlinka, J.; Cook, M. J.; Kuhlmann, L.; Freestone, D. R.
10.1101/689893 — neuroscience — Posted on 2019-07-02
3458 The Norepinephrine Metabolite DOPEGAL Confers Locus Coeruleus Tau Vulnerability and Propagation via Asparagine Endopeptidase
Kang, S. S.; Liu, X.; Ahn, E. H.; Xiang, J.; Manfredsson, F. P.; Yang, X.; Luo, H. R.; Liles, L. C.; Weinshenker, D.; Ye, K.
10.1101/688200 — neuroscience — Posted on 2019-07-02
3459 Detecting GPCR Complexes in Postmortem Human Brain with Proximity Ligation Assay and a Bayesian Classifier
Zhu, Y.; Meszaros, J.; Walle, R.; Fan, R.; Sun, Z.; Dwork, A. J.; Trifilieff, P.; Javitch, J. A.
10.1101/687780 — neuroscience — Posted on 2019-07-02
3460 Asparagine deprivation causes a reversible inhibition of Human Cytomegalovirus acute virus replication
Lee, C.-H.; Griffiths, S.; Digard, P.; Pham, N. T.; Auer, M.; Haas, J.; Grey, F.
10.1101/690016 — microbiology — Posted on 2019-07-02
3461 Specific targeting of intestinal Prevotella copri by a Listeria monocytogenes bacteriocin
Rolhion, N.; Chassaing, B.; Nahori, M.-A.; de Bodt, J.; Moura, A.; Lecuit, M.; Dussurget, O.; Berard, M.; Marzorati, M.; Fehlner-Peach, H.; Littman, D. R.; Gewirtz, A. T.; Van de Wiele, T.; Cossart, P.
10.1101/680801 — microbiology — Posted on 2019-07-02
3463 A MALDI-MS biotyping-like method to address honey bee health status through computational modelling
ARAFAH, K.; VOISIN, S. N.; MASSON, V.; ALAUX, C.; LECONTE, Y.; BOCQUET, M.; BULET, P.
10.1101/683607 — bioinformatics — Posted on 2019-07-02
3464 Post-translational polymodification of β1 tubulin regulates motor protein localisation in platelet production and function
Khan, A. O.; Slater, A.; Maclachlan, A.; Nicolson, P. L.; Pike, J. A.; Reyat, J. S. S.; Yule, J.; Thomas, S. G.; Morgan, N. V.
10.1101/595868 — cell biology — Posted on 2019-07-02
3465 Divergent behavioral responses in protracted opioid withdrawal in male and female C57BL/6J mice
Bravo, I. M.; Luster, B. R.; Flanigan, M. E.; Perez, P. J.; Cogan, E. S.; Schmidt, K. T.; McElligott, Z.
10.1101/689521 — neuroscience — Posted on 2019-07-02
3466 Printable microscale interfaces for long-term peripheral nerve mapping and precision control
Otchy, T. M.; Michas, C.; Lee, B.; Gopalan, K.; Gleick, J.; Semu, D.; Darkwa, L.; Holinsky, B. J.; Chew, D. J.; White, A. E.; Gardner, T. J.
10.1101/688218 — neuroscience — Posted on 2019-07-02
3472 Phase variation of a signal transduction system controls Clostridioides difficile colony morphology, motility, and virulence
Garrett, E.; Sekulovic, O.; Wetzel, D.; Jones, J. B.; Edwards, A.; Vargas-Cuebas, G.; McBride, S.; Tamayo, R.
10.1101/690230 — microbiology — Posted on 2019-07-02
3473 Tumor cell phenotype and heterogeneity differences in IDH1 mutant vs wild-type gliomas
Berens, M.; Sood, A.; Barnholtz-Sloan, J.; Graf, J. F.; Cho, S.; Kim, S.; Kiefer, J.; Byron, S. A.; Halperin, R. F.; Nasser, S.; Adkins, J.; Cuyugan, L.; Devine, K.; Ostrom, Q.; Couce, M.; Wolansky, L.; McDonough, E.; Schyberg, S.; Dinn, S.; Sloan, A. E.; Prados, M.; Phillips, J. J.; Nelson, S. J.; Liang, W. S.; Rusu, M.; Zavodszky, M.; Ginty, F.
10.1101/690297 — genomics — Posted on 2019-07-02
3477 Neural network and random forest models in protein function prediction
Hakala, K.; Kaewphan, S.; Björne, J.; Mehryary, F.; Moen, H.; Tolvanen, M.; Salakoski, T.; Ginter, F.
10.1101/690271 — bioinformatics — Posted on 2019-07-02
3480 Kinesin-8B controls basal body function and flagellum formation and is key to malaria parasite transmission
Zeeshan, M.; Ferguson, D. J. P.; Abel, S.; Burrrell, A.; Rea, E.; Brady, D.; Daniel, E.; Delves, M.; Vaughan, S.; Holder, A. A.; Le Roch, K. G.; Moores, C. A.; Tewari, R.
10.1101/686568 — cell biology — Posted on 2019-07-02
3482 Neurofeedback linked suppression of subthalamic beta oscillations speeds up movement initialisation in Parkinsonian Patients
He, S.; Mostofi, A.; Syed, E.; Torrecillos, F.; Tinkhauser, G.; Fischer, P.; Pogsyan, A.; Hasegawa, H.; Li, Y.; Ashkan, K.; Pereira, E.; Tan, H.
10.1101/687582 — neuroscience — Posted on 2019-07-02
3483 Superlets: time-frequency super-resolution using wavelet sets
Moca, V. V.; Nagy-Dabacan, A.; Barzan, H.; Muresan, R. C.
10.1101/583732 — neuroscience — Posted on 2019-07-02
3485 Divergent selection following speciation in two ectoparasitic honey bee mites
Techer, M. A.; Rane, R. V.; Grau, M. L.; Roberts, J. M. K.; Sullivan, S. T.; Liachko, I.; Childers, A. K.; Evans, J. D.; Mikheyev, A. S.
10.1101/512988 — genomics — Posted on 2019-07-02
3486 APEC: An accesson-based method for single-cell chromatin accessibility analysis
Li, B.; Li, Y.; Li, K.; Zhu, L.; Yu, Q.; Cai, P.; Fang, J.; Zhang, W.; Du, P.; Jiang, C.; Qu, K.
10.1101/646331 — bioinformatics — Posted on 2019-07-02
3489 The human gut virome database
Gregory, A.; Zablocki, O.; Howell, A.; Bolduc, B.; Sullivan, M. B.
10.1101/655910 — bioinformatics — Posted on 2019-07-02
3490 Scop3P: a comprehensive resource of human phosphosites within their full context
Ramasamy, P.; Turan, D.; Tichshenko, N.; Hulstaert, N.; Vandermarliere, E.; Vranken, W.; Martens, L.
10.1101/684985 — bioinformatics — Posted on 2019-07-02
3494 IBD analysis of Australian amyotrophic lateral sclerosis SOD1-mutation carriers identifies five founder events and links sporadic cases to existing ALS families
Henden, L.; Twine, N. A.; Szul, P.; McCann, E. P.; Nicholson, G. A.; Rowe, D. B.; Kiernan, M. C.; Bauer, D. C.; Blair, I. P.; Williams, K. L.
10.1101/685925 — genetics — Posted on 2019-07-02
3495 The antibody-based delivery of interleukin-12 to solid tumors boosts NK and CD8+ T cell activity and synergizes with immune check-point inhibitors
Puca, E.; Probst, P.; Stringhini, M.; Murer, P.; Pellegrini, G.; Cazzamalli, S.; Hutmacher, C.; Gouyou, B.; Wulhfard, S.; Matasci, M.; Villa, A.; Neri, D.
10.1101/684100 — cancer biology — Posted on 2019-07-02
3500 Unique-region phosphorylation targets LynA for rapid degradation, tuning its expression and signaling in myeloid cells
Brian, B. F.; Jolicoeur, A. S.; Guerrero, C. R.; Nunez, M. G.; Sychev, Z. E.; Hegre, S. A.; Satrom, P.; Habib, N.; Drake, J. M.; Schwertfeger, K. L.; Freedman, T. S.
10.1101/550053 — biochemistry — Posted on 2019-07-02
3501 Altered hypothalamic microstructure in human obesity
Thomas, K.; Beyer, F.; Lewe, G.; Zhang, R.; Schindler, S.; Schoenknecht, P.; Stumvoll, M.; Villringer, A.; Witte, A. V.
10.1101/593004 — neuroscience — Posted on 2019-07-02
3502 Blood, sweat and tears: a review of non-invasive DNA sampling
Lefort, M.-C.; Cruickshank, R. H.; Descovich, K.; Adams, N. J.; Barun, A.; Emami-Khoyi, A.; Ridden, J.; Smith, V. R.; Sprague, R.; Waterhouse, B.; Boyer, S.
10.1101/385120 — ecology — Posted on 2019-07-02
3503 SEA: The Small RNA Expression Atlas
Rahman, R.-U.; Bansal, V.; Fiosins, M.; Liebhoff, A.-M.; Rajput, A.; Sattar, A.; Magruder, D. S.; Madan, S.; Sun, T.; Gautam, A.; Heins, S.; Liwinski, T.; Bethune, J.; Trenkwalder, C.; Fluck, J.; Mollenhauer, B.; Bonn, S.
10.1101/133199 — bioinformatics — Posted on 2019-07-02
3505 A well-ordered nanoflow LC-MS/MS approach for proteome profiling using 200 cm long micro pillar array columns
Op De Beeck, J.; Pauwels, J.; Van Landuyt, N.; Jacobs, P.; De Malsche, W.; Desmet, G.; Argentini, A.; Staes, A.; Martens, L.; Impens, F.; Gevaert, K.
10.1101/472134 — biochemistry — Posted on 2019-07-01
3506 Stress activity is not predictive of coping style in North American red squirrels
Westrick, S. E.; van Kesteren, F.; Palme, R.; Boonstra, R.; Lane, J.; Boutin, S.; McAdam, A.; Dantzer, B.
10.1101/465187 — animal behavior and cognition — Posted on 2019-07-01
3509 High-Throughput, Lysis-free Screening for sulfatase Activity Using Escherichia coli Autodisplay in Microdroplets
van Loo, B.; Heberlein, M.; Mair, P.; Zinchenko, A.; Schuurmann, J.; Eenink, B. D. G.; Holstein, J. M.; Dilkaute, C.; Jose, J.; Hollfelder, F.; Bornberg-Bauer, E.
10.1101/479162 — bioengineering — Posted on 2019-07-01
3511 Microridges are apical projections formed of branched F-actin networks that organize the glycan layer
Pinto, C. S.; Khandekar, A.; Rajasekaran, B.; Kiesel, P.; Pigino, G.; Sonawane, M.
10.1101/442871 — cell biology — Posted on 2019-07-01
3513 Phylogenomics provides new insights into gains and losses of selenoproteins among Archaeplastida
Liu, H.; Wang, S. B.; Liang, P. H.; Wei, T.; Xu, Y.; Li, Z. L.; Sahu, S. K.; Wang, L. H.; Li, Y. H.; Fu, X.; Zhang, Y. G.; Melkonian, M.; Liu, X.
10.1101/674895 — molecular biology — Posted on 2019-07-01
3515 Mesenchymal stem cells therapy for spinal cord contusion: a comparative study on small and large animal models
Mukhamedshina, Y.; Shulman, I.; Ogurcov, S.; Kostennikov, A.; Zakirova, E.; Akhmetzyanova, E.; Rogozhin, A.; Masgutova, G.; James, V.; Masgutov, R.; Lavrov, I.; Rizvanov, A.
10.1101/684886 — cell biology — Posted on 2019-07-01
3516 Tissue mechanics regulate mitotic nuclear dynamics during epithelial development
Kirkland, N. J.; Yuen, A. C.; Tozluoglu, M.; Hui, N.; Paluch, E. K.; Mao, Y.
10.1101/688374 — developmental biology — Posted on 2019-07-01
3519 A hierarchy of migratory keratinocytes maintains the tympanic membrane
Frumm, S. M.; Yu, K. S.; Chang, J.; Briscoe, J. A.; Lee, K. P.; Byrnes, L. E.; Sneddon, J. B.; Tward, A. D.
10.1101/687947 — cell biology — Posted on 2019-07-01
3520 Epigenetic dysregulation underpins tumorigenesis in a cutaneous tumor syndrome.
Davies, H.; Hodgson, K.; Schwalbe, E.; Coxhead, J.; Sinclair, N.; Zou, X.; Cockell, S.; Husain, A.; Nik-Zainal, S.; Rajan, N.
10.1101/687459 — cancer biology — Posted on 2019-07-01
3521 A role of cellular translation regulation associated with toxic Huntingtin protein
Joag, H.; Ghatpande, V.; Sarkar, M.; Raina, A.; Desai, M.; Shinde, M.; Bose, T.; Majumdar, A.
10.1101/687764 — cell biology — Posted on 2019-07-01
3524 CD155/CD96 promotes immunosuppression in lung adenocarcinoma (LUAD)
He, W.; Zhang, H.; Li, S.; Cui, Y.; Zhu, Y.; Zhu, J.; Lei, Y.; Lin, R.; Xu, D.; Zhu, Z.; Jiang, W.; Wang, H.; Ke, Z.
10.1101/688812 — cancer biology — Posted on 2019-07-01
3525 Tumor cell-organized fibronectin is required to maintain a dormant breast cancer population
Barney, L.; Hall, C.; Schwartz, A.; Parks, A.; Sparages, C.; Galarza, S.; Platt, M.; Mercurio, A.; Peyton, S.
10.1101/686527 — cancer biology — Posted on 2019-07-01
3527 Pan-cancer whole genome analyses of metastatic solid tumors
Priestley, P.; Baber, J.; Lolkema, M.; Steeghs, N.; de Bruijn, E.; Duyvesteyn, K.; Haidari, S.; van Hoeck, A.; Onstenk, W.; Roepman, P.; Shale, C.; Voda, M.; Bloemendal, H.; Tjan-Heijnen, V.; van Herpen, C.; Labots, M.; Witteveen, P.; Smit, E.; Sleijfer, S.; Voest, E.; Cuppen, E.
10.1101/415133 — cancer biology — Posted on 2019-07-01
3528 Template-free detection and classification of heterogeneous membrane-bound complexes in cryo-electron tomograms
Martinez-Sanchez, A.; Kochovski, Z.; Laugks, U.; Meyer zum Alten Borgloh, J.; Pfeffer, S.; Baumeister, W.; Lucic, V.
10.1101/413484 — biophysics — Posted on 2019-07-01
3529 IDENTIFICATION OF A KEY CO-OPERATIVE ROLE OF YB-1 IN THE GENESIS AND METASTASIS OF HUMAN BREAST CANCER
Lefort, S.; El-Naggar, A.; Tan, S.; Colborne, S.; Negri, G. L.; Pellacani, D.; Hirst, M.; Gusterson, B.; Morin, G. B.; Sorensen, P. H.; Eaves, C. J.
10.1101/372524 — cancer biology — Posted on 2019-07-01
3532 Impact of Mengla virus proteins on human and bat innate immune pathways
Williams, C. G.; Gibbons, J. S.; Kieffer, T. R.; Luthra, P.; Edwards, M. R.; Basler, C. F.
10.1101/687400 — microbiology — Posted on 2019-07-01
3533 SEA: The Small RNA Expression Atlas
Rahman, R.-U.; Bansal, V.; Fiosins, M.; Liebhoff, A.-M.; Rajput, A.; Sattar, A.; Magruder, D. S.; Madan, S.; Sun, T.; Gautam, A.; Heins, S.; Liwinski, T.; Bethune, J.; Trenkwalder, C.; Fluck, J.; Mollenhauer, B.; Bonn, S.
10.1101/133199 — bioinformatics — Posted on 2019-07-01
3534 Dual SMAD inhibition and Wnt inhibition enhances the differentiation of induced pluripotent stem cells into Retinal Ganglion cells (iPSC-RGCs)
Chavali, V. R. M.; Haider, N.; Rathi, S.; Alapati, T.; He, J.; Gill, K.; Nikonov, S.; Nikonov, R.; Duong, T. T.; McDougald, D. S.; O'Brien, J. M.; Mills, J. A.
10.1101/682666 — neuroscience — Posted on 2019-07-01
3537 Neurofeedback linked suppression of subthalamic beta oscillations speeds up movement initialisation in Parkinsonian Patients
He, S.; Mostofi, A.; Pereira, E.; Syed, E.; Torrecillos, F.; Tinkhauser, G.; Fischer, P.; Pogsyan, A.; Ashkan, K.; Hasegawa, H.; Li, Y.; Brown, P.; Tan, H.
10.1101/687582 — neuroscience — Posted on 2019-07-01
3543 Monoclonal IgM antibodies raised against Candida albicans Hyr1 provide cross-kingdom protection against Gram negative bacteria
Youssef, E. G.; Alkhazraji, S.; Ghebremariam, T.; Zhang, L.; Singh, S.; Yount, N. Y.; Yeaman, M. R.; Uppuluri, P.; Ibrahim, A. S.
10.1101/687442 — immunology — Posted on 2019-07-01
3546 Label-retention expansion microscopy
Shi, X.; Li, Q.; Dai, Z.; Tran, A.; Feng, S.; Ramirez, A. D.; Lin, Z.; Wang, X.; Chow, T. T.; Seiple, I. B.; Huang, B.
10.1101/687954 — bioengineering — Posted on 2019-07-01
3550 Natural selection shapes codon usage in the human genome
Dhindsa, R. S.; Copeland, B. R.; Mustoe, A. M.; Goldstein, D. B.
10.1101/688051 — genomics — Posted on 2019-07-01
3551 Single-cell RNA sequencing reveals mRNA splice isoform switching during kidney development
Wineberg, Y.; Bar-Lev, T. H.; Futorian, A.; Ben-Haim, N.; Armon, L.; Ickowicz, D.; Oriel, S.; Bucris, E.; Yehuda, Y.; Pode-Shakked, N.; Gilad, S.; Benjamin, S.; Hohenstein, P.; Dekel, B.; Urbach, A.; Kalisky, T.
10.1101/688564 — genomics — Posted on 2019-07-01
3552 FAP57/WDR65 targets assembly of a subset of inner arm dyneins and connects to regulatory hubs in cilia
Lin, J.; Le, T. V.; Augspurger, K.; Tritschler, D.; Bower, R.; Fu, G.; Perrone, C.; O'Toole, E.; Mills, K. V.; Dymek, E.; Smith, E. F.; Nicastro, D.; Porter, M. E.
10.1101/688291 — cell biology — Posted on 2019-07-01
3553 Classifying disease-associated variants using measures of protein activity and stability
Jepsen, M. M.; Fowler, D. M.; Hartmann-Petersen, R.; Stein, A.; Lindorff-Larsen, K.
10.1101/688234 — biophysics — Posted on 2019-07-01
3554 First Attempt To Identify And Map QTLs Associated With Promiscuous Nodulation In Soybean
Agoyi, E. E.; Tumuhairwe, J. B.; Chigeza, G.; Tukamuhabwa, P.; Diers, B. W.
10.1101/688028 — genomics — Posted on 2019-07-01
3555 ALI-1, candidate gene of B1 locus, is associated with awn length and grain weight in common wheat
Wang, D.; Yu, K.; Jin, D.; Sun, L.; Chu, J.; Wu, W.; Xin, P.; Li, X.; Sun, J.; Yang, W.; Zhan, K.; Zhang, A.; Liu, D.
10.1101/688085 — plant biology — Posted on 2019-07-01
3556 The plant pathogen Pectobacterium atrosepticum contains a functional formate hydrogenlyase-2 complex.
Finney, A. J.; Lowden, R.; Fleszar, M.; Albareda, M.; Coulthurst, S. J.; Sargent, F.
10.1101/688135 — microbiology — Posted on 2019-07-01
3558 Genome-wide scan identifies novel genetic loci regulating salivary metabolite levels
Nag, A.; Kurushima, Y.; Bowyer, R. C. E.; Wells, P. M.; Weiss, S.; Pietzner, M.; Kocher, T.; Raffler, J.; Volker, U.; Mangino, M.; Spector, T.; Milburn, M. V.; Kastenmuller, G.; Mohney, R. P.; Suhre, K.; Menni, C.; Steves, C. J.
10.1101/687350 — genetics — Posted on 2019-07-01
3559 Intensity of infection with intracellular Eimeria spp. and pinworms is reduced in hybrid mice compared to parental subspecies
Balard, A.; Jarquin-Diaz, V. H.; Jost, J.; Martincova, I.; Dureje, L.; Pialek, J.; Macholan, M.; Goüy de Bellocq, J.; Baird, S. J. E.; Heitlinger, E.
10.1101/683698 — evolutionary biology — Posted on 2019-07-01
3560 A near-full-length HIV-1 genome from 1966 recovered from formalin-fixed paraffin-embedded tissue
Gryseels, S.; Watts, T. D.; Kabongo, J.-M. M.; Larsen, B. B.; Lemey, P.; Muyembe-Tamfum, J.-J.; Teuwen, D. E.; Worobey, M.
10.1101/687863 — evolutionary biology — Posted on 2019-07-01
3561 Injectable diblock copolypeptide hydrogel provides platform to maintain high local concentrations of taxol and local tumor control
Garrett, M.; Wollenberg, A. L.; Bernstein, A. M.; OShea, T. M.; Hung, D.; Staarman, B.; Soto, H.; Deming, T. J.; Sofroniew, M. V.; Kornblum, H. I.
10.1101/688762 — cancer biology — Posted on 2019-07-01
3565 The origin of extracellular DNA in bacterial biofilm infections in vivo
alhede, M.; Alhede, M.; Qvortrup, K.; Kragh, K.; Jensen, P. O.; Stewart, P. S.; Bjarnsholt, T.
10.1101/689067 — microbiology — Posted on 2019-07-01
3566 A copy number variant is associated with a spectrum of pigmentation patterns in the rock pigeon (Columba livia)
Bruders, R.; Van Hollebeke, H.; Osborne, E.; Kronenberg, Z.; Yandell, M.; Shapiro, M. D.
10.1101/688671 — genetics — Posted on 2019-07-01
3571 Peroxisome turnover and diurnal modulation of antioxidant activity in retinal pigment epithelia utilizes microtubule-associated protein 1 light chain 3B
Daniele, L. L.; Caughey, J.; Volland, S.; Sharp, R. C.; Dhingra, A.; Williams, D. S.; Philp, N. J.; Boesze-Battaglia, K.
10.1101/687533 — biochemistry — Posted on 2019-07-01
3572 A digital collection of rare and endangered lemurs and other primates from the Duke Lemur Center
Yapuncich, G. S.; Kemp, A. D.; Griffith, D. M.; Gladman, J. T.; Ehmke, E.; Boyer, D. M.
10.1101/688739 — zoology — Posted on 2019-07-01
3574 Critical brain dynamics and human intelligence
Ezaki, T.; Reis, E. F. d.; Watanabe, T.; Sakaki, M.; Masuda, N.
10.1101/688655 — neuroscience — Posted on 2019-07-01
3575 Preserving cultural heritage: Analyzing the antifungal potential of ionic liquids tested in paper restoration
Schmitz, K.; Wagner, S.; Reppke, M.; Maier, C. L.; Windeisen-Holzhauser, E.; Benz, J. P.
10.1101/689034 — microbiology — Posted on 2019-07-01
3576 Contributions to human breast milk microbiome and enteromammary transfer of Bifidobacterium breve
Kordy, K.; Gaufin, T.; Mwangi, M.; Li, F.; Cerini, C.; Lee, D. J.; Adisetiyo, H.; Woodward, C.; Pannaraj, P. S.; Tobin, N. H.; Aldrovandi, G. M.
10.1101/688754 — microbiology — Posted on 2019-07-01
3577 Linkage disequilibrium and haplotype block patterns in popcorn populations
Andrade, A. C.; Viana, J. M. S.; Pereira, H.; Pinto, V.; Fonseca, F.
10.1101/688960 — genetics — Posted on 2019-07-01
3578 Seroprevalence of human Brucellosis and associated risk factors among high risk occupations in Mbeya Region of Tanzania
Sagamiko, F. D.; Muma, J. B.; Karimuribo, E. D.; Mwanza, A. A.; Mfune, R. L.; Sindato, C.; Kavunga, H.; Hangombe, B. M.
10.1101/688705 — epidemiology — Posted on 2019-07-01
3579 Development of equations for converting random-zero to automated oscillometric blood pressure values
Yan, L.; Wen, X.; Dyer, A. R.; Chen, H.; Zhou, L.; Elliott, P.; Wu, Y.; Chan, Q.; Zhao, L.
10.1101/688895 — epidemiology — Posted on 2019-07-01
3581 Characterization of Sorbitol Dehydrogenase SmoS from Sinorhizobium meliloti 1021
Kohlmeier, M. G.; Bailey-Elkin, B. A.; Mark, B. L.; Oresnik, I. J.
10.1101/689042 — biochemistry — Posted on 2019-07-01
3587 The fitness landscape of the African Salmonella Typhimurium ST313 strain D23580 reveals unique properties of the pBT1 plasmid
Canals, R.; Chaudhuri, R. R.; Steiner, R. E.; Owen, S. V.; Quinones-Olvera, N.; Gordon, M. A.; Ibba, M.; Hinton, J. C. D.
10.1101/689075 — microbiology — Posted on 2019-07-01
3588 Factors associated with unsuppressed viremia in women living with HIV on lifelong ART in a multi-country cohort study: US-PEPFAR PROMOTE study.
Atuhaire, P.; Hanley, S.; Yende-Zuma, N.; Aizire, J.; Stranix-Chibanda, L.; Makanani, B.; Milala, B.; Cassim, H.; Taha, T.; Fowler, M. G.
10.1101/688945 — immunology — Posted on 2019-07-01
3589 Reducing expression of dynamin-related protein 1 increases radiation sensitivity of glioblastoma cells
Shen, C. C.; Cheng, W.-Y.; Chow, K.-C.; Chiao, M.-T.; Yang, Y.-C.; Wen-Yu Cheng, Kuan-Chih Chow, Ming-Tsang Chiao, Yi,
10.1101/688861 — cancer biology — Posted on 2019-07-01
3590 Tissue-specific changes in size and shape of the ligaments and tendons of the porcine knee during post-natal growth
Cone, S. G.; Piercy, H. E.; Lambeth, E. P.; Ru, H.; Piedrahita, J. A.; Spang, J. T.; Fordham, L. A.; Fisher, M.
10.1101/688820 — bioengineering — Posted on 2019-07-01
3594 Serum miR-379 expression is related to the development and progression of hypercholesterolemia in non-alcoholic fatty liver disease
Okamoto, K.; Koda, M.; Okamoto, T.; Onoyama, T.; Miyoshi, K.; Kishina, M.; Matono, T.; Kato, J.; Tokunaga, S.; Sugihara, T.; Hiramatsu, A.; Hyogo, H.; Tobita, H.; Sato, S.; Kawanaka, M.; Hara, Y.; Hino, K.; Chayama, K.; Murawaki, Y.; Isomoto, H.
10.1101/688903 — molecular biology — Posted on 2019-07-01
3596 The alarmone (p)ppGpp is part of the heat shock response of Bacillus subtilis
Schäfer, H.; Beckert, B.; Steinchen, W.; Nuss, A.; Beckstette, M.; Hantke, I.; Sudzinova, P.; Krasny, L.; Kaever, V.; Dersch, P.; Bange, G.; Wilson, D.; Turgay, K.
10.1101/688689 — microbiology — Posted on 2019-07-01
3598 Revisiting the \"satisfaction of spatial restraints\" approach of MODELLER for protein homology modeling
JANSON, G.; Grottesi, A.; Pietrosanto, M.; Ausiello, G.; Guarguaglini, G.; Paiardini, A.
10.1101/688614 — bioinformatics — Posted on 2019-07-01