bioRxiv directory

Kusick, G. F.; Chin, M.; Lippmann, K.; Adula, K. P.; Davis, M. W.; Jorgensen, E. M.; Watanabe, S.

10.1101/509216 — neuroscience — Posted on 2018-12-31

3 Accurate Modeling of Brain Responses to Speech

Wong, D. D. E.; Di Liberto, G. M.; de Cheveigne, A.

10.1101/509307 — neuroscience — Posted on 2018-12-31

4 Comparing Task-Relevant Information Across Different Methods of Extracting Functional Connectivity

Benitez Stulz, S.; Insabato, A.; Deco, G.; Gilson, M.; Senden, M.

10.1101/509059 — neuroscience — Posted on 2018-12-31

5 Bioluminescent Multi-Characteristic Opsin for monitoring visual cortical activity upon optical stimulation

Batabyal, S.; Gajjeraman, S.; Nagai, T.; Wright, W.; Mohanty, S.

10.1101/509323 — neuroscience — Posted on 2018-12-31

6 Comprehensive analysis of tumour initiation, spatial and temporal progression under multiple lines of treatment

Leshchiner, I.; Livitz, D.; Gainor, J. F.; Rosebrock, D.; Spiro, O.; Martinez, A.; Mroz, E.; Lin, J. J.; Stewart, C.; Kim, J.; Elagina, L.; Mino-Kenudson, M.; Rooney, M.; Ou, S.-H. I.; Wu, C. J.; Rocco, J. W.; Engelman, J. A.; Shaw, A. T.; Getz, G.

10.1101/508127 — bioinformatics — Posted on 2018-12-31

7 Detection of circulating extracellular mRNAs by modified small RNA-sequencing analysis

Akat, K. M.; Lee, Y. A.; Hurley, A.; Morozov, P.; Max, K. E. A.; Brown, M.; Bogardus, K.; Sopeyin, A.; Hildner, K.; Diacovo, T.; Neurath, M. F.; Borggrefe, M.; Tuschl, T.

10.1101/507681 — molecular biology — Posted on 2018-12-31

8 A complex containing lysine-acetylated actin inhibits the formin INF2

A, M.; Fung, T. S.; Kettenbach, A. N.; Chakrabarti, R.; Higgs, H.

10.1101/509133 — biochemistry — Posted on 2018-12-31

9 PTBP1 mRNA isoforms and regulation of their translation

Arake de Tacca, L. M.; Pulos, M. C.; Floor, S. N.; Cate, J.

10.1101/509174 — molecular biology — Posted on 2018-12-31

10 Structure-guided design of a pure orthosteric antagonist of integrin αIIbβ3 that inhibits thrombosis but not clot retraction

Adair, B. D.; Alonso, J. L.; van Agthoven, J.; Hayes, V.; Ahn, H. S.; Xiong, J.-P.; Poncz, M.; Arnaout, M. A.

10.1101/509299 — cell biology — Posted on 2018-12-31

11 A Bistable Mechanism Mediated by Integrins Controls Mechanotaxis of Leukocytes

Hornung, A.; Sbarrato, T.; Garcia-Seyda, N.; Aoun, L.; Luo, X.; Biarnes-Pelicot, M.; Theodoly, O.; Valignat, M.-P.

10.1101/509091 — biophysics — Posted on 2018-12-31

12 Diet carbs versus fat: does it really matter for maintaining lost weight?

Hall, K. D.; Guo, J.

10.1101/476655 — physiology — Posted on 2018-12-31

13 C. albicans white and opaque cells exhibit distinct spectra of organ colonization in standard mouse models of infection

Takagi, J.; Singh-Babak, S. D.; Lohse, M. B.; Dalal, C. K.; Johnson, A. D.

10.1101/461293 — microbiology — Posted on 2018-12-31

14 Embedding the single-cell experimental variable state space to reveal manifold structure of drug perturbation effects in breast cancer

Chen, W. S.; Zivanovic, N.; van Dijk, D.; Wolf, G.; Bodenmiller, B.; Krishnaswamy, S.

10.1101/455436 — bioinformatics — Posted on 2018-12-31

15 Crustaceans as hosts of parasites throughout the Phanerozoic

Klompmaker, A. A.; Robins, C. M.; Portell, R. W.; De Angeli, A.

10.1101/505495 — paleontology — Posted on 2018-12-31

16 Loud music and the specific sound stress open the blood-brain barrier: new fundamental, biomedical, and social aspects

Semyachkina-Glushkovskaya, O.; Chekhonin, V.; Bragin, D.; Bragina, O.; Vodovozova, E.; Alekseeva, A.; Salmin, V.; Morgun, A.; Malinovskaya, N.; Osipova, E.; Boytsova, E.; Tohidpour, A.; Shirokov, A.; Navolokin, N.; Yang, Y.; Zhang, C.; Feng, W.; Abdurashitov, A.; Ulanova, M.; Shushunova, N.; Khorovodov, A.; Terskov, A.; Shareef, A. E.; Pavlov, A.; Luo, Q.; Zhu, D.; Tuchin, V.; Kurths, J.

10.1101/509042 — neuroscience — Posted on 2018-12-31

17 Predictive modeling of susceptibility to substance abuse, mortality and drug-drug interactions in opioid patients

Vunikili, R.; Glicksberg, B. S.; Johnson, K. W.; Dudley, J.; Subramanian, L.; Khader, S.

10.1101/506451 — epidemiology — Posted on 2018-12-31

18 Speech Fine Structure Contains Critical Temporal Cues to Support Speech Segmentation

Teng, X.; Cogan, G.; Poeppel, D.

10.1101/508358 — neuroscience — Posted on 2018-12-31

19 Combinations of low-level and high-level neural processes can account for distinct patterns of context-dependent choice

Spitmaan, M.; Horno, O.; Chu, E.; Soltani, A.

10.1101/508655 — neuroscience — Posted on 2018-12-31

20 Object naming is facilitated by semantic richness but inhibited by semantic density: Electrophysiological and behavioral evidence

Rabovsky, M.; Schad, D. J.; Abdel Rahman, R.

10.1101/509000 — neuroscience — Posted on 2018-12-31

21 Physicochemical and microbiological profile of the potable water of Eastern Himalayan State Sikkim: An Indication of Severe Fecal Contamination and Immediate Health Risk

Singh, A. K.; Das, S.; Singh, S.; Pradhan, N.; Kumar, S.; Gajamer, V. R.; Lepcha, Y. D.; Tiwari, H. K.

10.1101/508283 — microbiology — Posted on 2018-12-31

22 Determinants of Heart Rate Recovery and Heart Rate Variability in Lung Cancer Survivors Eligible for Long-Term Cure

Ha, D.; Malhotra, A.; Ries, A. L.; O'Neal, W. T.; Fuster, M. M.

10.1101/508911 — epidemiology — Posted on 2018-12-31

23 Fundamental bounds on learning performance in neural circuits

Raman, D. V.; O'Leary, T.

10.1101/508994 — neuroscience — Posted on 2018-12-31

24 Configural properties underlie the perceived faceness of a stimulus

Gnolo, C.; Senden, M.; Grillini, A.; Cornelissen, F. W.; Goebel, R.

10.1101/509026 — neuroscience — Posted on 2018-12-31

25 Characterization of Dyspnea in Lung Cancer Survivors Following Curative-Intent Therapy

Ha, D.; Ries, A. L.

10.1101/508440 — epidemiology — Posted on 2018-12-31

26 FinDonor 10 000 study: A cohort to identify iron depletion and factors affecting it in Finnish blood donors

Partanen, J.; Niittymaki, P.; Nikiforow, N.; Palokangas, E.; Larjo, A.; Mattila, P.; Castren, J.; Arvas, M.

10.1101/507665 — epidemiology — Posted on 2018-12-31

27 A new convolution model for effective bio-motif detection via rationally design the \"black box\"

Jin, S.; Li, J.; Ding, Y.; Gao, G.

10.1101/508242 — bioinformatics — Posted on 2018-12-31

28 Awareness of danger inside the egg? Evidence of innate and learned predator recognition in cuttlefish embryo.

Mezrai, N.; Arduini, L.; Dickel, L.; Chiao, C.-C.; Darmaillacq, A.-S.

10.1101/508853 — animal behavior and cognition — Posted on 2018-12-31

29 The Long Limb Bones of the StW 573 Australopithecus Skeleton from Sterkfontein Member 2: Descriptions and Proportions

Heaton, J. L.; Pickering, T. R.; Carlson, K. J.; Crompton, R. H.; Jashashvili, T.; Beaudet, A.; Bruxelles, L.; Kuman, K.; Heile, A. J.; Stratford, D.; Clarke, R. J.

10.1101/497636 — paleontology — Posted on 2018-12-31

30 Bi-clustering based biological and clinical characterization of colorectal cancer in complementary to CMS classification

Cao, S.; Chang, W.; Wan, C.; Zhang, Y.; Zhao, J.; Li, B.; Ma, Q.; Zhang, C.

10.1101/508275 — bioinformatics — Posted on 2018-12-31

31 A network-based integrated framework for predicting virus-host interactions with applications

Wang, W.; Ren, J.; Ahlgren, N. A.; Fuhrman, J. A.; Braun, J.; Sun, F.

10.1101/505768 — bioinformatics — Posted on 2018-12-31

32 Novel KCNJ10 mutation identified in a SeSAME family compromise channel function and impairs Drosophila locomotor behavior

Nadella, R. K.; Chellappa, A.; Subramaniam, A. G.; Aggarwal, A.; More, R. P.; Dhana sekar, M.; Shetty, S.; Prakash, S.; Ratna, N.; VP, V.; Purushotham, M.; Saini, J.; Viswanath, B.; PS, B.; Nagappa, M.; Mehta, B.; Jain, S.; Kannan, R.

10.1101/506949 — neuroscience — Posted on 2018-12-31

33 SingleCellNet: a computational tool to classify single cell RNA-Seq data across platforms and across species

Tan, Y.; Cahan, P.

10.1101/508085 — bioinformatics — Posted on 2018-12-31

34 Glutamatergic and cholinergic metabotropic modulation induces plateau potentials in hippocampal OLM interneurons

Hagger-Vaughan, N.; Storm, J.

10.1101/508382 — neuroscience — Posted on 2018-12-31

35 Duffy Antigen Expression in Erythroid Bone Marrow Precursor Cells of Genotypically Duffy Negative Individuals

Dechavanne, C.; Dechavanne, S.; Metral, S.; Roeper, B.; Krishnan, S.; Fong, R.; Bennett, S.; Carias, L.; Chen, E.; Salinas, N. D.; Ghosh, A.; Tolia, N. H.; Woost, P. G.; Jacobberger, J. J.; Colin, Y.; Gamain, B.; King, C. L.; Zimmerman, P. A.

10.1101/508481 — genetics — Posted on 2018-12-31

36 Structural variants, clonal propagation, and genome evolution in grapevine (Vitis vinifera)

Zhou, Y. S.; Minio, A.; Massonnet, M.; Solares, E. A.; Lyu, Y.; Beridze, T.; Cantu, D.; Gaut, B. S.

10.1101/508119 — evolutionary biology — Posted on 2018-12-31

37 Dysregulation of splicing-related proteins in prostate cancer is controlled by FOXA1

Foster, J. G.; Arkell, R.; Del Giudice, M.; Anene, C.; Lauria, A.; Kelly, J. D. G.; Lemoine, N. R.; Oliviero, S.; Cereda, M.; Rajan, P.

10.1101/509034 — cancer biology — Posted on 2018-12-31

38 Epstein-Barr virus reprograms human B-lymphocytes immediately in the pre-latent phase of infection

Mrozek-Gorska, P.; Buschle, A.; Pich, D.; Schwarzmayr, T.; Fechtner, R.; Scialdone, A.; Hammerschmidt, W.

10.1101/503268 — microbiology — Posted on 2018-12-31

39 The third-generation tetracycline, KBP-7072, exploits and reveals a new potential of the primary tetracycline binding pocket

Kaminishi, T.; Schedlbauer, A.; Ochoa-Lizarralde, B.; de Astigarraga, E.; Capuni, R.; Yang, F.; Benn, V.; Liu, Q.; Tan, X.; Zhang, M.; Connell, S. R.; Fucini, P.

10.1101/508218 — biochemistry — Posted on 2018-12-31

40 Pulsating transcriptional dynamics generates cell-to-cell variability in E. coli flagellum synthesis

Kim, J. M.; Alcala-Garcia, M.; Balleza, E.; Cluzel, P.

10.1101/508580 — microbiology — Posted on 2018-12-31

41 Eco-evolutionary significance of ‘loners’

Rossine, F. W.; Martinez-Garcia, R.; Sgro, A. E.; Gregor, T.; Tarnita, C. E.

10.1101/508507 — ecology — Posted on 2018-12-31

42 Cysteine proteases of human hookworm Necator Americanus as virulence factors and implications for drug design with anti-heparin and heparin analogs: A bioinformatics study

Banerjee, A.; Widmer, K.; Caffrey, C. R.; Abagyan, R. A.

10.1101/116921 — bioinformatics — Posted on 2018-12-31

43 Leveraging protein dynamics to identify cancer mutational hotspots in 3D-structures

Kumar, S.; Clarke, D.; Gerstein, M.

10.1101/508788 — bioinformatics — Posted on 2018-12-31

44 dmrff: identifying differentially methylated regions efficiently with power and control

Suderman, M.; Staley, J. R.; French, R.; Arathimos, R.; Simpkin, A.; Tilling, K.

10.1101/508556 — bioinformatics — Posted on 2018-12-31

45 Parallel spatial channels converge at a bottleneck in anterior word-selective cortex

White, A. L.; Palmer, J.; Boynton, G. M.; Yeatman, J. D.

10.1101/508846 — neuroscience — Posted on 2018-12-31

46 Comparison of the structural organisation of reeler hippocampal CA1 region with wild type CA1.

Yousuf, M.; Zhao, S.; Frotscher, M.

10.1101/508648 — neuroscience — Posted on 2018-12-31

47 Hybridisation or Incomplete Lineage Sorting: The convoluted story about the origin of the capped-golden langur lineage (Cercopithecidae: Colobinae)

Arekar, K.; Parigi, A.; Karanth, K. P.

10.1101/508929 — evolutionary biology — Posted on 2018-12-31

48 31° South: Dietary niche of an arid-zone endemic passerine

Ribeiro, A. M.; Smit, B.; Gilbert, T.

10.1101/508465 — ecology — Posted on 2018-12-31

49 WBC-Profiler: an Unsupervised Feature Learning System for Leukocytes Characterization and Classification

Yan, H.; Mao, X.; Xia, Y.; Li, Z.; Wang, C.; Xia, R.; Xu, X.; Wang, Z.; Zhao, X.; Li, Y.; Shen, H.; Chang, H.

10.1101/508564 — bioinformatics — Posted on 2018-12-31

50 Neural response variability and divisive normalization

Coen-Cagli, R.; Solomon, S. S.

10.1101/508838 — neuroscience — Posted on 2018-12-31

51 Automated nuclear cartography reveals conserved sperm chromosome territory localization across 2 million years of mouse evolution

Skinner, B. M.; Bacon, J.; Rathje, C. C.; Larson, E. L.; Kopania, E. E. K.; Good, J. M.; Affara, N. A.; Ellis, P. J. I.

10.1101/508770 — genomics — Posted on 2018-12-31

52 Somatic LINE-1 retrotransposition in cortical neurons of Rett patients and healthy individuals

Zhao, B.; Wu, Q.; Ye, Y.; Guo, J.; Zheng, X.; Yang, X.; Yan, L.; Liu, Q.-R.; Hyde, T. M.; Wei, L.; Huang, Y.

10.1101/506758 — genomics — Posted on 2018-12-31

53 Identifying Changepoints in Biomarkers During the Preclinical Phase of AD

Younes, L.; Albert, M.; Moghekar, A.; Soldan, A.; Pettigrew, C.; Miller, M.

10.1101/508820 — neuroscience — Posted on 2018-12-31

54 Genome assembly of the A-group Wolbachia in Nasonia oneida and phylogenomic analysis of Wolbachia strains revealed genome evolution and lateral gene transfer

Wang, X.; Xiong, X.; Cao, W.; Zhang, C.; Werren, J.; Wang, X.

10.1101/508408 — evolutionary biology — Posted on 2018-12-31

55 More than a flying syringe: Using functional traits in vector borne disease research

Cator, L.; Johnson, L. R.; Mordecai, E. A.; El Moustaid, F.; Smallwood, T.; LaDeau, S.; Johnansson, M.; Hudson, P. J.; Boots, M.; Thomas, M. B.; Power, A. G.; Pawar, S.

10.1101/501320 — ecology — Posted on 2018-12-31

56 Therapeutic suppression of proteolipid protein rescues Pelizaeus-Merzbacher Disease in mice

Elitt, M. S.; Barbar, L.; Shick, H. E.; Powers, B. E.; Maeno-Hikitchi, Y.; Madhavan, M.; Allan, K. C.; Nawash, B. S.; Nevin, Z. S.; Olsen, H. E.; Hitomi, M.; LePage, D. F.; Jiang, W.; Conlon, R. A.; Rigo, F.; Tesar, P. J.

10.1101/508192 — neuroscience — Posted on 2018-12-31

57 Mutations close to the peptidoglycan-binding region of the stators of the bacterial flagellar motor influence phenamil resistance

Ishida, T.; Ito, R.; Matzke, N. J.; Sowa, Y.; Baker, M. A.

10.1101/507533 — microbiology — Posted on 2018-12-31

58 Mapping and characterization of structural variation in 17,795 deeply sequenced human genomes

Abel, H. J.; Larson, D. E.; Chiang, C.; Das, I.; Kanchi, K. L.; Layer, R. M.; Neale, B. M.; Salerno, W. J.; Reeves, C.; Buyske, S.; NHGRI Centers for Common Disease Genomics, ; Matise, T. C.; Muzny, D. M.; Zody, M. C.; Lander, E. S.; Dutcher, S. K.; Stitziel, N. O.; Hall, I. M.

10.1101/508515 — genomics — Posted on 2018-12-31

59 Local decondensation at double-stranded DNA breaks modifies chromatin at long distances and reduces encounter times during homology search

Amitai, A.; Shukron, O.; Seeber, A.; Holcman, D.

10.1101/508689 — genetics — Posted on 2018-12-31

60 A novel role for Cyclic Nucleotide-Gated Ion Channel 2 (DND1) in auxin signaling

Chakraborty, S.; Toyota, M.; Moeder, W.; Chin, K.; Fortuna, A.; Champigny, M.; Vanneste, S.; Gilroy, S.; Beeckman, T.; Yoshioka, K.

10.1101/508572 — plant biology — Posted on 2018-12-31

61 Transcriptome landscape of a thermal-tolerant coral endosymbiont reveals molecular signatures of symbiosis and dysbiosis

Bellantuono, A. J.; Dougan, K. E.; Granados-Cifuentes, C.; Rodriguez-Lanetty, M.

10.1101/508184 — genomics — Posted on 2018-12-31

62 Comparing the aftereffects of motion and causality across visual co-ordinates

Gallagher, R.; Arnold, D. H.

10.1101/499764 — neuroscience — Posted on 2018-12-31

63 Molecular Crowding Tunes Material States of Ribonucleoprotein Condensates

Kaur, T.; Alshareedah, I. S.; Wang, W.; Ngo, J. C.; Moosa, M. M.; Banerjee, P. R. R.

10.1101/508895 — biophysics — Posted on 2018-12-31

64 MARK2/Par1b present at retraction fibres corrects spindle off-centering induced by actin disassembly

Hart, M.; Zulkipli, I.; Shrestha, R. L.; Dang, D. D.; Conti, D.; Kujawiak, I.; Draviam, V. M.

10.1101/508861 — cell biology — Posted on 2018-12-31

65 Rab converter DMon1 constitutes a novel node in the brain-gonad axis essential for female germline maturation

Dhiman, N.; Deshpande, G.; Ratnaparkhi, G. S.; Ratnaparkhi, A.

10.1101/508598 — developmental biology — Posted on 2018-12-31

66 High-resolution bladder morphology in the intact mouse bladder: an intravital two-photon study

Schueth, A.; Theelen, T.; Foulquier, S.; van Koeveringe, G. A.; van Zandvoort, M.

10.1101/508879 — cell biology — Posted on 2018-12-31

67 Multiple mutations acquired into canine RecQ-like helicases encoded by the aneuploid genome of transmissible sarcoma

Kapulkin, W. J.

10.1101/508101 — cancer biology — Posted on 2018-12-31

68 Structural basis of recognition and destabilization of histone H2B ubiquitinated nucleosome by DOT1L histone H3 Lys79 methyltransferase

Jang, S.; Kang, C.; Yang, H.-S.; Jung, T.; Hebert, H.; Jung, K. Y.; Kim, S. J.; Hohng, S.; Song, J.-J.

10.1101/508663 — biophysics — Posted on 2018-12-31

69 Live cell monitoring for factors affecting genome variation

Xia, Y.; Zhu, K.; Irianto, J.; Andrechak, J. C.; Dooling, L. J.; Pfeifer, C. R.; Discher, D. E.

10.1101/508150 — genomics — Posted on 2018-12-31

70 HOOK3 is a scaffold for the opposite-polarity microtubule-based motors cytoplasmic dynein and KIF1C

Kendrick, A. A.; Redwine, W. B.; Tran, P. T.; Pontano Vaites, L.; Dzieciatkowska, M.; Harper, J. W.; Reck-Peterson, S. L.

10.1101/508887 — cell biology — Posted on 2018-12-31

71 Combinatorial Control through Allostery

Galstyan, V.; Funk, L.; Einav, T.; Phillips, R.

10.1101/508226 — biophysics — Posted on 2018-12-31

72 Blood-based molecular biomarker signatures in Alzheimer’s disease: insights from systems biomedicine perspective

Islam, T.; Islam, M. R. R.; Shahjaman, M.; Zaman, T.; Karim, M. R.; Quinn, J. M. W.; Holsinger, R. M. D.; Moni, M. A.

10.1101/481879 — systems biology — Posted on 2018-12-31

73 Clustering of activated CD8 T cells around malaria-infected hepatocytes is rapid and is driven by antigen-specific T cells

Kelemen, R.; Cockburn, I. A.; Ganusov, V. V.

10.1101/508796 — immunology — Posted on 2018-12-31

74 Aberrant chromatin resolution in G2/M leads to chromosome instability

Boteva, L.; Nozawa, R.-S.; Naughton, C.; Samejima, K.; Earnshaw, W.; Gilbert, N.

10.1101/508713 — molecular biology — Posted on 2018-12-31

75 An approach for accelerated isolation of genetically manipulated cell clones with reduced clonal variability

Casden, N.; Behar, O.

10.1101/508721 — cell biology — Posted on 2018-12-31

76 Functional systemic CD4 immunity is a differential factor for clinical responses to PD-L1/PD-1 blockade therapy in lung cancer

Zuazo, M.; Arasanz, H.; Fernandez-Hinojal, G.; Garcia-Granda, M. J.; Gato, M.; Bocanegra, A.; Hernandez, B.; Martinez, M.; Teijeira, L.; Morilla, I.; Lecumberri, M. J.; Fernandez de Lascoiti, A.; Vera, R.; Kochan, G.; Escors, D.

10.1101/508739 — cell biology — Posted on 2018-12-31

77 Identification of SNA-I-positive cells as stem-like cells in an established cell line using computerized single-cell lineage tracking

Sato, S.; Rancourt, A.; Satoh, M. S.

10.1101/508705 — cell biology — Posted on 2018-12-31

78 Cholinergic switch between two different types of slow waves in cerebral cortex

Nghiem, T.-A. E.; Tort-Colet, N.; Gorski, T.; Ferrari, U.; Moghimyfiroozabad, S.; Goldman, J. S.; Telenczuk, B.; Capone, C.; Bal, T.; di Volo, M.; Destexhe, A.

10.1101/430405 — neuroscience — Posted on 2018-12-31

79 Identification and design of vinyl sulfone inhibitors against Cryptopain1-a cysteine protease from cryptosporidiosis-causingCryptosporidium parvum

Banerjee, A.; Abagyan, R.

10.1101/332965 — bioinformatics — Posted on 2018-12-31

80 Lineage specific histories of Mycobacterium tuberculosis dispersal in Africa and Eurasia

O'Neill, M. B.; Shockey, A. C.; Zarley, A.; Aylward, W.; Eldholm, V.; Kitchen, A.; Pepperell, C. S.

10.1101/210161 — evolutionary biology — Posted on 2018-12-31

81 Modeling membrane nanotube morphology: the role of heterogeneity in composition and material properties

Alimohamadi, H.; Ovryn, B.; Rangamani, P.

10.1101/373811 — biophysics — Posted on 2018-12-31

82 Measuring Granger-causal effects in multivariate time series by system editing

Pascual-Marqui, R. D.; Biscay, R. J.; Bosch-Bayard, J.; Faber, P.; Kinoshita, T.; Kochi, K.; Milz, P.; Nishida, K.; Yoshimura, M.

10.1101/504068 — neuroscience — Posted on 2018-12-30

83 Affective flexibility without perceptual awareness

Homan, P.; Lau, H. L.; Levy, I.; Raio, C. M.; Bach, D. R.; Carmel, D.; Schiller, D.

10.1101/505545 — neuroscience — Posted on 2018-12-30

84 Systematic review of 50 years of coral disease research visualized through the scope of network theory

Montilla, L. M.; Ascanio, A.; Verde, A.; Croquer, A.

10.1101/487447 — ecology — Posted on 2018-12-30

85 An Extreme Value Theory Model of Cross-Modal Sensory Information Integration in Modulation of Vertebrate Visual System Functions

Banerjee, S.; Scheirer, W. J.; Li, L.

10.1101/423038 — neuroscience — Posted on 2018-12-30

86 A flexible and generalizable model of online latent-state learning

Cochran, A. L.; Cisler, J. M.

10.1101/443234 — neuroscience — Posted on 2018-12-30

87 Phenotypic, functional and taxonomic features predict host-pathogen interactions

Liu-Wei, W.; Kafkas, S.; Hoehndorf, R.

10.1101/508762 — bioinformatics — Posted on 2018-12-30

88 Prohibitin is a prognostic marker of relapse and therapeutic target to block chemotherapy resistance in Wilms tumor

Ortiz, M. V.; Ahmed, S.; Burns, M.; Henssen, A. G.; Hollmann, T.; MacArthur, I.; Gunasekerea, S.; Gaewsky, L.; Bradwin, G.; Ryan, J.; Letai, A.; He, Y.; Naranjo, A.; Chi, Y.-Y.; LaQuaglia, M.; Heaton, T.; Cifani, P.; Dome, J. S.; Gadd, S.; Perlman, E.; Mullen, E.; Steen, H.; Kentsis, A.

10.1101/508754 — cancer biology — Posted on 2018-12-30

89 Neural ensemble dynamics in dorsal motor cortex during speech in people with paralysis

Stavisky, S. D.; Willett, F. R.; Murphy, B. A.; Rezaii, P.; Memberg, W. D.; Miller, J. P.; Kirsch, R. F.; Hochberg, L. R.; Ajiboye, A. B.; Shenoy, K. V.; Henderson, J. M.

10.1101/505487 — neuroscience — Posted on 2018-12-30

90 Rescue of DNA damage in cells after constricted migration reveals bimodal mechano-regulation of cell cycle

Xia, Y.; Pfeifer, C. R.; Zhu, K.; Irianto, J.; Liu, D.; Pannell, K.; Chen, E. J.; Dooling, L. J.; Greenberg, R. A.; Discher, D. E.

10.1101/508200 — cell biology — Posted on 2018-12-30

91 Proteasome inhibitor-induced modulation reveals the spliceosome as a specific therapeutic vulnerability in multiple myeloma

Huang, H. H.-L.; Ferguson, I. D.; Thornton, A. M.; Lam, C. Y. T.; Lin, Y.-H. T.; Bastola, P.; Mariano, M. C.; Marcoulis, M. D.; Malato, J.; Phojanakong, P.; Hann, B. C.; Brooks, A. N.; Wiita, A. P.

10.1101/508549 — cancer biology — Posted on 2018-12-30

92 Human RAD51 paralogue, SWSAP1, fosters RAD51 filament by regulating the anti-recombinase, FIGNL1 AAA+ ATPase

Matsuzaki, K.; Kondo, S.; Ishikawa, T.; Shinohara, A.

10.1101/507632 — molecular biology — Posted on 2018-12-30

93 Fluorescence Microscopy of Piezo1 in Droplet Hydrogel Bilayers

Jaggers, O. B.; Ridone, P.; Martinac, B.; Baker, M. A.

10.1101/508176 — molecular biology — Posted on 2018-12-30

94 Efficient peripheral nerve firing characterisation through massive feature extraction

Lubba, C. H.; Fulcher, B. D.; Schultz, S. R.; Jones, N. S.

10.1101/508341 — bioengineering — Posted on 2018-12-30

95 Structural basis of sterol recognition by human hedgehog receptor PTCH1

Qi, C.; Di Minin, G.; Vercellino, I.; Wutz, A.; Korkhov, V. M.

10.1101/508325 — biochemistry — Posted on 2018-12-30

96 Multi-plane Imaging of Neural Activity From the Mammalian Brain Using a Fast-switching Liquid Crystal Spatial Light Modulator

Liu, R.; Ball, N.; Brockill, J.; Kuan, L.; Millman, D.; White, C.; Leon, A.; Williams, D.; Nishiwaki, S.; de Vries, S.; Larkin, J.; Sullivan, D.; Slaughterbeck, C.; Farrell, C.; Saggau, P.

10.1101/506618 — bioengineering — Posted on 2018-12-30

97 Biophysical characterizations of the recognition of the AAUAAA polyadenylation signal

Hamilton, K.; Sun, Y.; Tong, L.

10.1101/503755 — biochemistry — Posted on 2018-12-30

98 Cation binding to SERCA

Sun, B.; Stewart, B. D.; Kucharski, A. N.; Kekenes-Huskey, P. M.

10.1101/507996 — biochemistry — Posted on 2018-12-30

99 Reconstruction of the global neural crest gene regulatory network in vivo

Williams, R. M.; Candido-Ferreira, I.; Repapi, E.; Gavriouchkina, D.; Senanayake, U.; Telenius, J.; Taylor, S.; Hughes, J.; Sauka-Spengler, T.

10.1101/508473 — developmental biology — Posted on 2018-12-30

100 Mutations in the zebrafish hmgcs1 gene reveal a novel function for isoprenoids during red blood cell development.

Hernandez, J. A.; Castro, V. L.; Reyes-Nava, N.; Montes, L. P.; Quintana, A. M.

10.1101/508531 — developmental biology — Posted on 2018-12-30

101 Autocrine STAT3 activation in HPV positive cervical cancer through a virus-driven Akt - NF?B - IL-6 signalling axis

Morgan, E. L.; Macdonald, A.

10.1101/507954 — cancer biology — Posted on 2018-12-29

102 Cryo-EM Structure of OSCA1.2 from Oryza sativa: Mechanical basis of hyperosmolality-gating in Plants

Maity, K.; Heumann, J.; McGrath, A. P.; Kopcho, N. J.; Hsu, P.-K.; Lee, C.-W.; Mapes, J. H.; Garza, D.; Krishnan, S.; Morgan, G. P.; Medrano-Soto, A.; Hendargo, K. J.; Klose, T.; Rees, S. D.; Saier, M. H.; Pineros, M.; Komives, E. A.; Schroeder, J. I.; Chang, G.; Stowell, M. H. B.

10.1101/505453 — biophysics — Posted on 2018-12-30

103 On the Periodic Gain of the Ribosome Flow Model

Sadeghi, M.; Ali Al-Radhawi, M.; Margaliot, M.; Sontag, E.

10.1101/507988 — systems biology — Posted on 2018-12-29

104 A flexible and generalizable model of online latent-state learning

Cochran, A. L.; Cisler, J. M.

10.1101/443234 — neuroscience — Posted on 2018-12-29

105 On the Periodic Gain of the Ribosome Flow Model

Sadeghi, M.; Ali Al-Radhawi, M.; Margaliot, M.; Sontag, E.

10.1101/507988 — systems biology — Posted on 2018-12-29

106 Detection of arterial wall abnormalities via Bayesian model selection

Larson, K.; Bowman, C.; Papadimitriou, C.; Koumoutsakos, P.; Matzavinos, A.

10.1101/422485 — bioengineering — Posted on 2018-12-29

107 Plants emit remotely detectable ultrasounds that can reveal plant stress

Khait, I.; Sharon, R.; Perelman, R.; Boonman, A.; Yovel, Y.; Hadany, L.

10.1101/507590 — plant biology — Posted on 2018-12-29

108 Faster is better: Visual responses to motion are stronger for higher refresh rates

Khoei, M. A.; Galluppi, F.; Sabatier, Q.; Pouget, P.; R Cottereau, B.; Benosman, R.

10.1101/505354 — neuroscience — Posted on 2018-12-29

109 Human sperm chromatin forms spatially restricted nucleosome domains consistent with programmed nucleosome positioning

Huang, W.-H.; Zhang, M.-Z.; Cao, X.-M.; Xu, F.-Q.; Liang, X.-W.; Fu, L.-L.; Sun, F.-Z.; Huang, X.-Y.

10.1101/481028 — zoology — Posted on 2018-12-29

110 Reductions in prefrontal activation predict off-topic utterances during speech production

Hoffman, P.

10.1101/433185 — neuroscience — Posted on 2018-12-29

111 The clarifying role of time series data in the population genetics of HIV

Feder, A. F.; Pennings, P. S.; Petrov, D. A.

10.1101/495275 — evolutionary biology — Posted on 2018-12-29

112 HPAanalyze: An R Package that Facilitates the Retrieval and Analysis of The Human Protein Atlas Data

Tran, A. N.; Dussaq, A. M.; Kennell, T.; Willey, C.; Hjelmeland, A.

10.1101/355032 — bioinformatics — Posted on 2018-12-29

113 Active sensing with light improves predator detection in a diurnal fish

Santon, M.; Bitton, P.-P.; Dehm, J.; Fritsch, R.; Harant, U. K.; Anthes, N.; Michiels, N. K.

10.1101/324202 — zoology — Posted on 2018-12-29

114 Kinetics and identities of extracellular peptidases in subsurface sediments of the White Oak River Estuary, NC

Steen, A. D.; Kevorkian, R. T.; Bird, J. T.; Dombrowski, N.; Baker, B. J.; Hagen, S. M.; Mulligan, K. H.; Schmidt, J. M.; Webber, A. T.; Alperin, M. J.

10.1101/080671 — ecology — Posted on 2018-12-29

115 Finding structure in multi-armed bandits

Schulz, E.; Franklin, N. T.; Gershman, S. J.

10.1101/432534 — animal behavior and cognition — Posted on 2018-12-29

116 Sensitivity to statistical structure facilitates perceptual analysis of complex auditory scenes

Aman, L.; Picken, S.; Andreou, L.; Chait, M.

10.1101/126763 — neuroscience — Posted on 2018-12-29

117 The allotetraploid origin and asymmetrical genome evolution of common carp Cyprinus carpio

Xu, P.; Xu, J.; Liu, G.; Chen, L.; Zhou, Z.; Peng, W.; Jiang, Y.; Zhao, Z.; Jia, Z.; Sun, Y.; Wu, Y.; Chen, B.; Pu, F.; Feng, J.; Luo, J.; Zhang, H.; Wang, H.; Dong, C.; Jiang, W.; Sun, X.

10.1101/498774 — genomics — Posted on 2018-12-29

118 Attention enhances LFP phase coherence in macaque visual cortex, improving sensory processing

Zareian, B.; Daliri, M. R.; Maboudi, K.; Abrishami Moghaddam, H.; Treue, S.; Esghaei, M.

10.1101/499756 — neuroscience — Posted on 2018-12-29

119 Delay activity dynamics: task dependent time encoding and low dimensional trajectories

Cueva, C. J.; Marcos, E.; Saez, A.; Genovesio, A.; Jazayeri, M.; Romo, R.; Salzman, C. D.; Shadlen, M. N.; Fusi, S.

10.1101/504936 — neuroscience — Posted on 2018-12-29

120 KGF induces podosome formation via integrin-Erk1/2 signaling in human immortalized oral epithelial cells

Sa, G.; Liu, Z.; Ren, J.; Wan, Q.; Xiong, X.; Yu, Z.; Chen, H.; Zhao, Y.; He, S.

10.1101/508416 — cell biology — Posted on 2018-12-29

121 Wolbachia induce cytoplasmic incompatibility and affect mate preference in Habrobracon hebetor to increase the chance of its transmission to the next generation

Bagheri, Z.; Talebi, A. A.; Asgari, S.; Mehrabadi, M.

10.1101/505073 — zoology — Posted on 2018-12-29

122 Imputation of single-cell gene expression with an autoencoder neural network

Badsha, M. B.; Li, R.; Liu, B.; Li, Y. I.; Xian, M.; Banovich, N. E.; Fu, A. Q.

10.1101/504977 — bioinformatics — Posted on 2018-12-29

123 Analysis of >30,000 abstracts suggests higher false discovery rates for oncology journals, especially those with low impact factors

Hall, L. M.; Hendricks, A. E.

10.1101/500660 — scientific communication and education — Posted on 2018-12-29

124 Crowding and binding: Not all feature-dimensions behave in the same way

Yashar, A.; Wu, X.; Chen, J.; Carrasco, M.

10.1101/508069 — neuroscience — Posted on 2018-12-29

125 Glioma cell migration in confined microchannels via a motor-clutch mechanism

Prahl, L. S.; Stanslaski, M. R.; Vargas, P.; Piel, M.; Odde, D. J.

10.1101/500843 — biophysics — Posted on 2018-12-29

126 TIGAR: An Improved Bayesian Tool for Transcriptomic Data Imputation Enhances Gene Mapping of Complex Traits

Nagpal, S.; Meng, X.; Epstein, M. P.; Tsoi, L. C.; Patrick, M.; Gibson, G.; De Jager, P.; Bennett, D. A.; Wingo, A. P.; Wingo, T. S.; Yang, J.

10.1101/507525 — genetics — Posted on 2018-12-28

127 Flowers respond to pollinator sound within minutes by increasing nectar sugar concentration.

Veits, M.; Khait, I.; Obolski, U.; Zinger, E.; Boonman, A.; Goldshtein, A.; Saban, K.; Ben-Dor, U.; Estlein, P.; Kabat, A.; Peretz, D.; Ratzersdorfer, I.; Krylov, S.; Chamovitz, D.; Sapir, Y.; Yovel, Y.; Hadany, L.

10.1101/507319 — ecology — Posted on 2018-12-28

128 The dimensionality of biological diversity revisited.

Nakamura, G.; Goncalves, L. O.; Duarte, L.

10.1101/508002 — ecology — Posted on 2018-12-28

129 Human microbiome aging clocks based on deep learning and tandem of permutation feature importance and accumulated local effects

Galkin, F.; Aliper, A.; Putin, E.; Kuznetsov, I.; Gladyshev, V. N.; Zhavoronkov, A.

10.1101/507780 — bioinformatics — Posted on 2018-12-28

130 Estrogen receptor alpha controls gene expression via translational offsetting

Lorent, J.; Rebello, R. J.; van Hoef, V.; Lawrence, M. G.; Szkop, K. J.; Kusnadi, E.; Samreen, B.; Balanathan, P.; Scharmann, K.; Takizawa, I.; Leidel, S. A.; Risbridger, G. P.; Topisirovic, I.; Larsson, O.; Furic, L.

10.1101/507574 — systems biology — Posted on 2018-12-28

131 Natural selection subsumes and unites multiple theories of perceptual compression

Quintanar-Zilinskas, V.

10.1101/507459 — neuroscience — Posted on 2018-12-28

132 Protect, Modify, Deprotect (PMD): A strategy for creating vaccines to elicit antibodies targeting a specific epitope

Weidenbacher, P. A.; Kim, P. S.

10.1101/507541 — immunology — Posted on 2018-12-28

133 Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction.

Sigalova, O.; Chaplin, A. V.; Bochkareva, O. O.; Shelyakin, P. V.; Filaretov, V. A.; Akkuratov, E.; Burskaya, V.; Gelfand, M. S.

10.1101/506121 — genomics — Posted on 2018-12-28

134 A generalist pathogen view of plant evolution

Caseys, C.; Shi, G.; Soltis, N.; Gwinner, R.; Corwin, J.; Atwell, S.; Kliebenstein, D.

10.1101/507491 — plant biology — Posted on 2018-12-28

135 Sex differences in cocaine self-administration behaviour under Long Access versus Intermittent Access conditions

Algallal, H.; Allain, F.; Ndiaye, N. A.; Samaha, A.-N.

10.1101/507343 — neuroscience — Posted on 2018-12-28

136 Synapse propensity of human memory CD8 T cells confers competitive advantage over naïve counterparts

Mayya, V.; Judokusumo, E.; Abu-Shah, E.; Neiswanger, W.; Kam, L. C.; Dustin, M. L.

10.1101/507392 — immunology — Posted on 2018-12-28

137 Accurate tracking of the mutational landscape of diploid hybrid genomes reveals genetic background effects

Tattini, L.; Tellini, N.; Mozzachiodi, S.; D'Angiolo, M.; Loeillet, S.; Nicolas, A.; Liti, G.

10.1101/507830 — genomics — Posted on 2018-12-28

138 High throughput genotyping of structural variations in a complex plant genome using an original Affymetrix(R) Axiom(R) array

Mabire, C.; Duarte, J.; Darracq, A.; Pirani, A.; Rimbert, H.; Madur, D.; Combes, V.; Vitte, C.; Praud, S.; Riviere, N.; Joets, J.; Pichon, J.-P.; Nicolas, S. D.

10.1101/507756 — genomics — Posted on 2018-12-28

139 Novel Dual Labeled Fluorescence Probe Based Assay to Measure the Telomere Length

Sethi, I.; Bhat, G. R.; Kumar, R.; Rai, E.; Sharma, S.

10.1101/507616 — genetics — Posted on 2018-12-28

140 Impact of Kuntai Capsules on LIF, IGF-1 and EGF Expression in the Implantation Window of Endometrium in Mice

Tan, L.; Li, X.-X.; Chu, X.-Y.; Li, Y.; Wan, L.-J.

10.1101/507509 — pharmacology and toxicology — Posted on 2018-12-28

141 Mitf links neuronal activity and long-term homeostatic intrinsic plasticity

Atacho, D.; Reynisson, H.; Peturdottir, A. T.; Eysteinsson, T.; Steingrimsson, E.; Petersen, P.

10.1101/507640 — neuroscience — Posted on 2018-12-28

142 Inception in visual cortex: in vivo-silico loops reveal most exciting images

Walker, E. Y.; Sinz, F. H.; Froudarakis, E.; Fahey, P. G.; Muhammad, T.; Ecker, A. S.; Cobos, E.; Reimer, J.; Pitkow, X.; Tolias, A. S.

10.1101/506956 — neuroscience — Posted on 2018-12-28

143 Prefrontal pathways provide top down control of memory for sequences of events

Jayachandran, M.; Linley, S.; Schlecht, M.; Mahler, S. V.; Vertes, R. P.; Allen, T. A.

10.1101/508051 — neuroscience — Posted on 2018-12-28

144 Rat orbitofrontal ensemble activity contains a multiplexed but value-invariant representation of task structure in an odor sequence task

Zhou, J.; Gardner, M. P. H.; Stalnaker, T. A.; Ramus, S. J.; Wikenheiser, A. M.; Niv, Y.; Schoenbaum, G.

10.1101/507376 — neuroscience — Posted on 2018-12-28

145 LEMMI: A Live Evaluation of Computational Methods for Metagenome Investigation

Seppey, M.; Manni, M.; Zdobnov, E. M.

10.1101/507731 — microbiology — Posted on 2018-12-28

146 Genetics of fasting indices of glucose homeostasis using GWIS unravels tight relationships with inflammatory markers

Fedko, I. O.; Nivard, M. G.; Hottenga, J.-J.; Zudina, L.; Cross Consortia Pleiotropy (XC-Pleiotropy) Group, ; CHARGE Inflammation Working Group, ; Balkhiyarova, Z.; Chasman, D. I.; Ganesh, S.; Huang, J.; Nalls, M. A.; O'Donnel, C. J.; Pare, G.; Ridker, P. M.; Meta-Analyses of Glucose and Insulin-related traits Consortium (MAGIC) Investigators, ; Mägi, R.; Kaakinen, M.; Prokopenko, I.; Boomsma, D. I.

10.1101/496802 — genetics — Posted on 2018-12-28

147 miRsponge: an R/Bioconductor package for the identification and analysis of miRNA sponge interaction networks and modules

Zhang, J.; Liu, L.; Xu, T.; Xie, Y.; Zhao, C.; Li, J.; Le, T. D.

10.1101/507749 — bioinformatics — Posted on 2018-12-28

148 On the Periodic Gain of the Ribosome Flow Model

Sadeghi, M.; Ali Al-Radhawi, M.; Margaliot, M.; Sontag, E.

10.1101/507988 — systems biology — Posted on 2018-12-28

149 The sounds of plants - Plants emit remotely-detectable ultrasounds that can reveal plant stress

Khait, I.; Sharon, R.; Perelman, R.; Boonman, A.; Yovel, Y.; Hadany, L.

10.1101/507590 — plant biology — Posted on 2018-12-28

150 Compress global, dilate local: Intentional binding in action-outcome alternations

Imaizumi, S.; Tanno, Y.; Imamizu, H.

10.1101/507582 — neuroscience — Posted on 2018-12-28

151 A pairwise maximum entropy model uncovers the white matter scaffold underlying emergent dynamics in intracranial EEG

Ashourvan, A.; Shah, P.; Pines, A.; Gu, S.; Lynn, C. W.; Bassett, D. S.; Davis, K. A.; Litt, B.

10.1101/507962 — neuroscience — Posted on 2018-12-28

152 Moments reconstruction and local dynamic range compression of high order Superresolution Optical Fluctuation Imaging

Yi, X.; Son, S.; Ando, R.; Miyawaki, A.; Weiss, S.

10.1101/500819 — bioengineering — Posted on 2018-12-28

153 Are signals of aggressive intent less reliable in urban habitats?

Akcay, C.; Beck, M. L.; Sewall, K. B.

10.1101/504258 — animal behavior and cognition — Posted on 2018-12-28

154 The MooSciTIC project: a booster shot of science for West African research and higher education actors

Atindehou, M.; Adeoti, K.; Loko, L. E. Y.; Beule, T.; Paradis, E.; Djedatin, G.; Christine, T.-D.; Sabot, F.; Lagnika, L.; Jaligot, E.

10.1101/504092 — scientific communication and education — Posted on 2018-12-28

155 An increase in spontaneous activity mediates visual habituation

Miller, J.-e. K.; Miller, B. R.; Yuste, R.

10.1101/507814 — neuroscience — Posted on 2018-12-28

156 Tissue repair in the mouse liver following acute carbon tetrachloride depends on injury-induced Wnt/β-catenin signaling

Zhao, L.; Jin, Y.; Donahue, K.; Tsui, M.; Fish, M.; Logan, C.; Wang, B.; Nusse, R.

10.1101/507418 — developmental biology — Posted on 2018-12-28

157 MYC Functions as a Switch for Natural Killer Cell-Mediated Immune Surveillance of Lymphoid Malignancies

Swaminathan, S.; Heftdal, L.; Liefwalker, D.; Dhanasekaran, R.; Deutzmann, A.; Horton, C.; Mosley, A.; Libersbach, M.; Maecker, H.; Felsher, D.

10.1101/503086 — cancer biology — Posted on 2018-12-28

158 The mutational features of aristolochic acid-induced mouse and human liver cancers

Lu, Z.-N.; Luo, Q.; Zhao, L.-N.; Shi, Y.; Su, X.-B.; Han, Z.-G.

10.1101/507301 — cancer biology — Posted on 2018-12-28

159 Past-future information bottleneck framework for simultaneously sampling biomolecular reaction coordinate, thermodynamics and kinetics

Wang, Y.; Ribeiro, J.; Tiwary, P.

10.1101/507822 — biophysics — Posted on 2018-12-28

160 Genes of the Pig, Sus scrofa, reconstructed with EvidentialGene

Gilbert, D. G.

10.1101/412130 — genomics — Posted on 2018-12-28

161 Super-enhancer impairment is a link between MLL4 inactivated lung tumors and their vulnerability to glycolysis pathway inhibition

Alam, H.; Tang, M.; Maitituoheti, M.; Dhar, S. S.; Amin, S.; Gu, B.; Chen, T.-Y.; Lin, Y.-H.; Chen, J.; Muller, F.; DeMayo, F. J.; Baseler, L.; Rai, K.; Lee, M.

10.1101/507202 — cancer biology — Posted on 2018-12-28

162 Detection of a novel mutation G511T in the 530 loop in 16S rRNA in multi drugs resistant Mycobacterium tuberculosis isolated from Sudanese patients

Alfatih, Y. M.; Idris, A. B.; Hassan, H. G.; Nour, E. O. M.; Elhaj, N. M. A.; El-Zaki, S.-E.; Eldirdery, M. M.; Ali, R. H.; Ibrahim, N. Y.; Elegail, A. M.; Salih, M. A.

10.1101/497628 — microbiology — Posted on 2018-12-28

163 Accurate sub-population detection and mapping across single cell experiments with PopCorn

Wang, Y.; Hoinka, J.; Przytycka, T. M.

10.1101/485979 — bioinformatics — Posted on 2018-12-28

164 Evidence that population increase and range expansion by Eurasian Sparrowhawks has impacted avian prey populations

Bell, C. P.

10.1101/491522 — ecology — Posted on 2018-12-28

165 Biophysical model of axonal stimulation in epiretinal visual prostheses

Beyeler, M.

10.1101/424622 — neuroscience — Posted on 2018-12-28

166 Charting Tissue Expression Anatomy by Spatial Transcriptome Decomposition

Maaskola, J.; Bergenstrahle, L.; Jurek, A.; Fernandez Navarro, J.; Lagergren, J.; Lundeberg, J.

10.1101/362624 — bioinformatics — Posted on 2018-12-28

167 Higher-order thalamic circuits channel parallel streams of visual information in mice

Bennett, C.; Gale, S. D.; Garrett, M. E.; Newton, M. L.; Callaway, E. M.; Murphy, G. J.; Olsen, S. R.

10.1101/395244 — neuroscience — Posted on 2018-12-28

168 A machine-learning approach for accurate detection of copy-number variants from exome sequencing

Kumar, V.; Jensen, M.; Jayakar, G.; Kelkar, N.; Girirajan, S.

10.1101/460931 — genomics — Posted on 2018-12-28

169 Additive effect of contrast and velocity proves the role of strong excitatory drive in suppression of visual gamma response.

Orekhova, E. V.; Prokofyev, A. O.; Nikolaeva, A. Y.; Schneiderman, J. F.; Stroganova, T. A.

10.1101/497214 — neuroscience — Posted on 2018-12-28

170 Highly multiplexed in situ protein imaging with signal amplification by Immuno-SABER

Saka, S. K.; Wang, Y.; Kishi, J. Y.; Zhu, A.; Zeng, Y.; Xie, W.; Kirli, K.; Yapp, C.; Cicconet, M.; Beliveau, B. J.; Lapan, S. W.; Yin, S.; Lin, M.; Boyden, E. S.; Kaeser, P. S.; Pihan, G.; Church, G. M.; Yin, P.

10.1101/507566 — cell biology — Posted on 2018-12-28

171 Single-cell virus sequencing of influenza infections that trigger innate immunity

Russell, A. B.; Kowalsky, J. R.; Bloom, J. D.

10.1101/437277 — microbiology — Posted on 2018-12-28

172 Using camouflage for conservation: colour change in juvenile European lobster

Mynott, S.; Daniels, C.; Widdicombe, S.; Stevens, M.

10.1101/431692 — ecology — Posted on 2018-12-28

173 The complete structure of the human TFIIH core complex

Greber, B.; Toso, D.; Fang, J.; Nogales, E.

10.1101/507723 — biophysics — Posted on 2018-12-28

174 Disruption of ubiquitin mediated proteolysis is a widespread mechanism of tumorigenesis

Martinez-Jimenez, F.; Muinos, F.; Lopez-Arribillaga, E.; Lopez-Bigas, N.; Gonzalez-Perez, A.

10.1101/507764 — bioinformatics — Posted on 2018-12-28

175 Drug-Target Interaction prediction using Multi Graph Regularized Nuclear Norm Minimization

Mongia, A.; Majumdar, A.

10.1101/455642 — bioinformatics — Posted on 2018-12-28

176 Spontaneous Resolution in Racemic Solutions of N-trifluoroacetylated α-aminoalcohols

Zlenko, D. V.; Zanin, A.; Skoblin, A.; Tverdislov, V.; Stovbun, S.

10.1101/507657 — biophysics — Posted on 2018-12-28

177 A tRNA modification balances carbon and nitrogen metabolism by regulating phosphate homeostasis, to couple metabolism to cell cycle progression.

Gupta, R.; Walvekar, A.; Liang, S.; Rashida, Z.; Shah, P.; Laxman, S.

10.1101/507707 — biochemistry — Posted on 2018-12-28

178 Deciphering copper coordination in the animal prion protein amyloidogenic domain

Salzano, G.; Brennich, M.; Mancini, G.; Tran, T. H.; Legname, G.; D'Angelo, P.; Giachin, G.

10.1101/507624 — biochemistry — Posted on 2018-12-28

179 Vector-Mediated Transport Producing Drug-like Peptides

Gruber, K. A.; Cowan, J. A.; Cowan, A.; Qi, W.; Pearson, S.; Ross, M. J.; Wachnowsky, C.; Gallazzi, F.; Jiang, S.; Van Doren, S. R.; Callahan, M. F.

10.1101/507434 — pharmacology and toxicology — Posted on 2018-12-28

180 Affective bonding explains post-traumatic behavioral development in adult mice

Lee, R. X.; Stephens, G. J.; Kuhn, B.

10.1101/249870 — neuroscience — Posted on 2018-12-28

181 A New Clustering and Nomenclature for Beta Turns Derived from High-Resolution Protein Structures

Shapovalov, M.; Vucetic, S.; Dunbrack, R. L.

10.1101/390211 — bioinformatics — Posted on 2018-12-28

182 Structure and mechanism of TagA, a novel membrane-associated glycosyltransferase that produces wall teichoic acids in pathogenic bacteria

Kattke, M. D.; Gosschalk, J. E.; Martinez, O. E.; Kumar, G.; Gale, R. T.; Cascio, D.; Sawaya, M. R.; Phillips, M.; Brown, E.; Clubb, R. T.

10.1101/507483 — biochemistry — Posted on 2018-12-28

183 epiTAD: a web application for visualizing high throughput chromosome conformation capture data in the context of genetic epidemiology

Creed, J. H.; Aden-Buie, G.; Monteiro, A. N.; Gerke, T. A.

10.1101/243840 — genomics — Posted on 2018-12-28

184 RLIM enhances BMP signalling mediated fetal lung development in mice

Kammoun, M.; Maas, E.; Criem, N.; Gribnau, J.; Zwijsen, A.; Vermeesch, J. R.

10.1101/507921 — genetics — Posted on 2018-12-28

185 Enriched pathogen diversity under host-type heterogeneity and immune-mediated competition

Martinez, P. P.; Woods, R. J.; Pascual, M.

10.1101/195065 — ecology — Posted on 2018-12-28

186 Sex-specific regulatory mechanisms underlying Hepatocellular Carcinoma

Natri, H. M.; Wilson Sayres, M.; Buetow, K.

10.1101/507939 — genomics — Posted on 2018-12-28

187 Genetically regulated gene expression underlies lipid traits in Hispanic cohorts

Andaleon, A.; Mogil, L. S.; Wheeler, H. E.

10.1101/507905 — genetics — Posted on 2018-12-28

188 A new Approximate Bayesian Computation framework to distinguish among complex evolutionary models using whole-genome data

Ghirotto, S.; Vizzari, M. T.; Tassi, F.; Barbujani, G.; Benazzo, A.

10.1101/507897 — genetics — Posted on 2018-12-28

189 Influence of season, tourist activities and camp management on body condition, testicular and adrenal steroids, lipid profiles, and metabolic status in captive bull elephants in Thailand

Khonmee, J.; Norkaew, T.; Brown, J. L.; Bansiddhi, P.; Somgird, C.; Thitaram, C.; Punyapornwithaya, V.; Punturee, K.; Vongchan, P.; Somboon, N.

10.1101/507855 — zoology — Posted on 2018-12-28

190 Premeiotic and meiotic failures associate with hybrid male sterility in the Anopheles gambiae complex

Liang, J.; Sharakhov, I. V.

10.1101/507889 — evolutionary biology — Posted on 2018-12-28

191 Extensive Transmission of Microbes along the Gastrointestinal Tract

Schmidt, T. S.; Hayward, M. R.; Coelho, L. P.; Li, S. S.; Costea, P. I.; Voigt, A. Y.; Wirbel, J.; Maistrenko, O. M.; Alves, R. J.; Bergsten, E.; de Beaufort, C.; Sobhani, I.; Heintz-Buschart, A.; Sunagawa, S.; Zeller, G.; Wilmes, P.; Bork, P.

10.1101/507194 — microbiology — Posted on 2018-12-28

192 Nitrogen- and phosphorus-starved Triticum aestivum show distinct belowground microbiome profiles

Page, A. P.; Tremblay, J.; Masson, L.; Greer, C. W.

10.1101/507863 — microbiology — Posted on 2018-12-28

193 A complex copy number variant underlies differences in both colour plumage and cold adaptation in a dimorphic seabird.

Tigano, A.; Reiertsen, T. K.; Walters, J. R.; Friesen, V. L.

10.1101/507384 — evolutionary biology — Posted on 2018-12-28

194 Spontaneous behaviors drive multidimensional, brain-wide population activity

Stringer, C.; Pachitariu, M.; Steinmetz, N.; Bai Reddy, C.; Carandini, M.; Harris, K. D.

10.1101/306019 — neuroscience — Posted on 2018-12-28

195 Controlling seizure propagation in large-scale brain networks

Olmi, S.; Petkoski, S.; Guye, M.; Bartolomei, F.; Jirsa, V. K.

10.1101/505958 — neuroscience — Posted on 2018-12-27

196 Reconfigurations within resonating communities of brain regions following TMS reveal different scales of processing

Garcia, J. O.; Ashourvan, A.; Thurman, S. M.; Srinivasan, R.; Bassett, D. S.; Vettel, J. M.

10.1101/500967 — neuroscience — Posted on 2018-12-27

197 Nongenic cancer-risk SNPs affect oncogenes, tumor suppressor genes, and immune function

Fagny, M.; Platig, J.; Kuijjer, M. L.; Lin, X.; Quackenbush, J.

10.1101/507236 — cancer biology — Posted on 2018-12-27

198 A machine-learning classifier trained with microRNA ratios to distinguish melanomas from nevi

Torres, R.; Lang, U. E.; Hejna, M.; Shelton, S. J.; Joseph, N. M.; Shain, A. H.; Yeh, I.; Wei, M. L.; Oldham, M. C.; Bastian, B. C.; Judson-Torres, R. L.

10.1101/507400 — cancer biology — Posted on 2018-12-27

199 Neocortical layer 4 in adult mouse differs in major cell types and circuit organization between primary sensory areas

Scala, F.; Kobak, D.; Shan, S.; Bernaerts, Y.; Laturnus, S.; Cadwell, C. R.; Hartmanis, L.; Castro, J.; Tan, Z. H.; Sandberg, R.; Berens, P.; Jiang, X.; Tolias, A. S.

10.1101/507293 — neuroscience — Posted on 2018-12-27

200 C. elegans models of Marfan and Marfan-like Syndromes reveal trafficking defects of the type II TGFβ receptor as a potential novel disease mechanism

Lin, J.; Vora, M.; Kane, N. S.; Gleason, R. J.; Padgett, R. W.

10.1101/486381 — cancer biology — Posted on 2018-12-27

201 A Novel Animal Model Of Somatosensory-Evoked Reflex Seizures Induced By Peripheral Stimulation

Bortel, A.; Pilgram, R.; Yao, Z. S.; Shmuel, A.

10.1101/506352 — neuroscience — Posted on 2018-12-27

202 Cholinergic switch between two different types of slow waves in cerebral cortex

Nghiem, T.-A. E.; Tort-Colet, N.; Gorski, T.; Ferrari, U.; Moghimyfiroozabad, S.; Goldman, J. S.; Telenczuk, B.; Capone, C.; Bal, T.; di Volo, M.; Destexhe, A.

10.1101/430405 — neuroscience — Posted on 2018-12-27

203 Selective kinase inhibition shows that Bur1 (Cdk9) phosphorylates the Rpb1 linker in vivo

Chun, Y.; Suh, H.; Joo, Y. J.; Batot, G.; Hill, C. P.; Formosa, T.; Buratowski, S.

10.1101/507251 — molecular biology — Posted on 2018-12-27

204 The effect of ocean warming on black sea bass (Centropristis striata) aerobic scope and hypoxia tolerance

Slesinger, E.; Andres, A.; Young, R.; Seibel, B.; Saba, V.; Phelan, B.; Rosendale, J.; Wieczorek, D.; Saba, G.

10.1101/507368 — physiology — Posted on 2018-12-27

205 Human, Nonhuman Primate, and Bat Cells Are Broadly Susceptible to Tibrovirus Particle Cell Entry

Cai, Y.; Yu, S.; Jangra, R.; Postnikova, E.; Wada, J.; Tesh, R.; Whelan, S.; Lauck, M.; Wiley, M.; Finch, C.; Radoshitzky, S.; O'Connor, D.; Palacios, G.; Chandran, K.; Chiu, C.; Kuhn, J.

10.1101/507350 — microbiology — Posted on 2018-12-27

206 Enhancer Reprogramming Confers Dependence on Glycolysis and IGF signaling in KMT2D Mutant Melanoma

Maitituoheti, M.; Keung, E.; Tang, M.; Yan, L.; Alam, H.; Han, G.; Raman, A.; Terranova, C.; Sarkar, S.; Orouji, E.; Amin, S.; Sharma, S.; Williams, M.; Samant, N. S.; Dhamdhere, M.; Zhang, N.; Shah, T.; Shah, A.; Axelrad, J. B.; Esmaeili Anvar, N.; Lin, Y.-H.; Jiang, S.; Chang, Q. E.; Ingram, D. R.; Wang, W.-L.; Lazar, A.; Lee, M. G.; Muller, F.; Wang, L.; Ying, H.; Rai, K.

10.1101/507327 — cancer biology — Posted on 2018-12-27

207 Sparse Recovery Methods for Cell Detection and Layer Estimation

LaGrow, T. J.; Moore, M. G.; Prasad, J. A.; Webber, A.; Davenport, M. A.; Dyer, E. L.

10.1101/445742 — neuroscience — Posted on 2018-12-27

208 Interspecies Social Spreading: Interaction between two sessile soil bacteria leads to emergence of surface motility

McCully, L. M.; Bitzer, A. S.; Seaton, S. C.; Smith, L. M.; Silby, M. W.

10.1101/296814 — microbiology — Posted on 2018-12-27

209 Variation of HbA1c affects cognition and white matter microstructure in healthy, young adults

Repple, J.; Karliczek, G.; Meinert, S.; Foerster, K.; Grotegerd, D.; Goltermann, J.; Arolt, V.; Baune, B.; Dannlowski, U.; Opel, N.

10.1101/507186 — neuroscience — Posted on 2018-12-27

210 Coding advantage of grid cell orientation under noisy conditions

Chen, D.; Sun, K.-J.; Wang, L.; Zhang, Z.; Lai, Y.-C.; Axmacher, N.; Wang, W.-X.

10.1101/507061 — neuroscience — Posted on 2018-12-27

211 Causes of death among hospitalized adults with dengue fever in Tainan, 2015: emphasis on cardiac events and bacterial infections

Lee, J.-C.; Cia, C.-T.; Lee, N.-Y.; Ko, N.-Y.; Chen, P.-L.; Ko, W.-C.

10.1101/507137 — epidemiology — Posted on 2018-12-27

212 How differing modes of transgenerational inheritance affect population viability in fluctuating environments

Proulx, S. R.; Dey, S.; Guzella, T.; Teotonio, H.

10.1101/506865 — ecology — Posted on 2018-12-27

213 scCapsNet: a deep learning classifier with the capability of interpretable feature extraction, applicable for single cell RNA data analysis

Wang, L.; Nie, R.; Xin, R.; Zhang, J.; Cai, J.

10.1101/506642 — bioinformatics — Posted on 2018-12-27

214 Altered resting state functional connectivity in a thalamo-cortico-cerebellar network in patients with schizophrenia

Forlim, C. G.; Klock, L.; Baechle, J.; Stoll, L.; Giemsa, P.; Fuchs, M.; Schoofs, N.; Montag, C.; Gallinat, J.; Kuehn, S.

10.1101/506576 — neuroscience — Posted on 2018-12-27

215 Influence of expected reward on perceptual decision making

Rakhshan, M.; Lee, V.; Chu, E.; Harris, L.; Laiks, L.; Khorsand, P.; Soltani, A.

10.1101/506790 — neuroscience — Posted on 2018-12-27

216 Elucidating genomic patterns and recombination events in plant cybrid mitochondria

Garcia, L. E.; Zubko, M. K.; Zubko, E. I.; Sanchez-Puerta, M. V.

10.1101/506816 — molecular biology — Posted on 2018-12-27

217 A thorough RNA-seq characterization of the porcine sperm transcriptome and its seasonal changes

Godia, M.; Estill, M.; Castello, A.; Balasch, S.; Rodriguez-Gil, J. E.; Krawetz, S. A.; Sanchez, A.; Clop, A.

10.1101/506899 — genomics — Posted on 2018-12-27

218 Wnt signalling is a major determinant of neuroblastoma cell lineages

Szemes, M.; Greenhough, A.; Malik, K.

10.1101/506980 — cancer biology — Posted on 2018-12-27

219 RMI-chip: a microfluidics setup for functional imaging of microbial interactions with tree roots

Gros, M.-F. S.; Shinde, S.; Akins, C.; Johnson, J. L.; Zerbs, S.; Wilton, R.; Kemner, K. M.; Noirot, P. H.; Babnigg, G.

10.1101/506774 — physiology — Posted on 2018-12-27

220 Measuring urinary cortisol and testosterone levels in male Barbary macaques: A comparison of EIA and LC-MS

Rincon, A.; Ostner, J.; Heistermann, M.; Deschner, T.

10.1101/506923 — physiology — Posted on 2018-12-27

221 An efficient analytical reduction of nonlinear detailed neuron models

Amsalem, O.; Eyal, G.; Rogozinski, N.; Segev, I.

10.1101/506485 — neuroscience — Posted on 2018-12-27

222 Differential expression of microRNAs in Alzheimer’s disease brain, blood and cerebrospinal fluid: a systematic review and meta-analysis

Takousis, P.; Sadlon, A.; Schulz, J.; Wohlers, I.; Dobricic, V.; Middleton, L.; Lill, C. M.; Perneczky, R.; Bertram, L.

10.1101/499491 — neuroscience — Posted on 2018-12-27

223 HSF2 protects against proteotoxicity by maintaining cell-cell adhesion

Joutsen, J.; Da Silva, A. J.; Budzynski, M. A.; Luoto, J. C.; de Thonel, A.; Concordet, J.-P.; Mezger, V.; Saberan-Djoneidi, D.; Henriksson, E.; Sistonen, L.

10.1101/506881 — cell biology — Posted on 2018-12-27

224 Inhibition of mitochondrial permeability transition by deletion of the ANT family and CypD

Karch, J.; Bround, M. J.; Khalil, H.; Sargent, M. A.; Latchman, N.; Terada, N.; Peixoto, P. M.; Molkentin, J. D.

10.1101/506964 — cell biology — Posted on 2018-12-27

225 ChIA-PIPE: A fully automated pipeline for ChIA-PET data analysis and visualization

Capurso, D.; Wang, J.; Tian, S. Z.; Cai, L.; Namburi, S.; Lee, B.; Tjong, H.; Tang, Z.; Wang, P.; Wei, C.-L.; Ruan, Y.; Li, S.

10.1101/506683 — bioinformatics — Posted on 2018-12-27

226 Energy Optimization is a Major Objective in the Real-Time Control of Step Width in Human Walking

Abram, S. J.; Selinger, J. C.; Donelan, J. M.

10.1101/506808 — neuroscience — Posted on 2018-12-27

227 PLZF limits enhancer activity during hematopoietic progenitor aging

Poplineau, M.; Vernerey, J.; Platet, N.; Nguyen, L.; Herault, L.; Esposito, M.; Saurin, A.; Guilouf, C.; Iwama, A.; Duprez, E.

10.1101/504324 — molecular biology — Posted on 2018-12-27

228 Mantoniella beaufortii and Mantoniella baffinensis sp. now. (Mamiellales, Mamiellophyceae), two new green algal species from the high Arctic

Yau, S.; Lopes dos Santos, A.; Eikrem, W.; Gérikas Ribero, C.; Gourvil, P.; Balzano, S.; Escande, M.-L.; Moreau, H.; Vaulot, D.

10.1101/506915 — microbiology — Posted on 2018-12-27

229 Analysis of 100 high coverage genomes from a pedigreed captive baboon colony

Robinson, J.; Birnbaum, S.; Newman, D. E.; Chan, J.; Glenn, J. P.; Cox, L. A.; Wall, J. D.

10.1101/506782 — genomics — Posted on 2018-12-27

230 Cooperation of dominant oncogenes with regulatory germline variants shapes clinical outcomes in childhood cancer

Musa, J.; Cidre-Aranaz, F.; Aynaud, M.-M.; Orth, M. F.; Mirabeau, O.; Varon, M.; Grossetete, S.; Surdez, D.; Ohmura, S.; Gerke, J. S.; Marchetto, A.; Dallmayer, M.; Baldauf, M. C.; Gartlgruber, M.; Westermann, F.; Stein, S.; Hoelting, T. L. B.; Knott, M.; Sannino, G.; Li, J.; Romero-Perez, L.; Hartmann, W.; Dirksen, U.; Gymrek, M.; Anderson, N. D.; Shlien, A.; Rotblat, B.; Kirchner, T.; Delattre, O.; Grunewald, T. G. P.

10.1101/506659 — cancer biology — Posted on 2018-12-27

231 BRG1 is a prognostic indicator and a potential therapeutic target for prostate cancer

Muthuswami, R.; Bailey, L.; Rakesh, R.; Imbalzano, A.; Nickerson, J.; Hockensmith, J. W.

10.1101/506972 — cancer biology — Posted on 2018-12-27

232 A Mathematical Modeling Approach to The Cort-Fitness Hypothesis

El Moustaid, F.; Lane, S.; Moore, I.; Johnson, L.

10.1101/506741 — animal behavior and cognition — Posted on 2018-12-27

233 Salience-driven value construction for adaptive choice under risk

Spitmaan, M.; Chu, E.; Soltani, A.

10.1101/506832 — neuroscience — Posted on 2018-12-27

234 Genomic Prediction of Complex Disease Risk

Lello, L.; Raben, T.; Yong, S. Y.; Tellier, L. C.; Hsu, S. D. H.

10.1101/506600 — genomics — Posted on 2018-12-27

235 Identification of TTN as a novel candidate gene for atrioventricular block in a Chinese pedigree by whole-exome sequencing

Li, W.; Liu, G.; Yang, Z.; Chen, W.; Yang, P.; Xu, J.; Miao, L.; Yu, Q.; Guo, J.; Xu, H.; Liu, F.; Sun, Y.; Huang, H.; Peng, Z.; Sun, J.

10.1101/506824 — genetics — Posted on 2018-12-27

236 Assessing the bioenergy potential of grassland biomass from conservation areas in England

French, K.

10.1101/506709 — ecology — Posted on 2018-12-27

237 Consistency, Inconsistency and Ambiguity of Metabolite Names in Biochemical Databases Used for Genome Scale Metabolic Modelling

Pham, N.; Van Heck, R.; van Dam, J.; Schaap, P.; Saccenti, E.; Suarez-Diez, M.

10.1101/503664 — bioinformatics — Posted on 2018-12-27

238 Sparse Recovery Methods for Cell Detection and Layer Estimation

LaGrow, T. J.; Moore, M. G.; Prasad, J. A.; Webber, A.; Davenport, M. A.; Dyer, E. L.

10.1101/445742 — neuroscience — Posted on 2018-12-27

239 Quantitative insights into the cyanobacterial cell economy

Zavrel, T.; Faizi, M.; Loureiro, C.; Poschmann, G.; Stühler, K.; Sinetova, M.; Zorina, A.; Steuer, R.; Cerveny, J.

10.1101/446179 — microbiology — Posted on 2018-12-27

240 Dynamics of Spaetzle morphogen shuttling in the Drosophila embryo shapes pattern

Rahimi, N.; Averbukh, I.; Carmon, S.; Schejter, E. D.; Barkai, N.; Shilo, B.-Z.

10.1101/505925 — developmental biology — Posted on 2018-12-27

241 Pupillary responses to affective words in bilinguals’ first versus second language

Toivo, W.; Scheepers, C.

10.1101/506998 — physiology — Posted on 2018-12-27

242 Low back pain among nurses working in a clinical settings of Africa: A systematic review and meta-analysis of a 19 years of studies

Semachew, A.; Workineh, Y.; Ayalew, E.; Animaw, W.; Yinager Workineh, Emiru Ayalew and Worku Animaw,

10.1101/507053 — epidemiology — Posted on 2018-12-27

243 Mitochondrial cristae biogenesis coordinates with ETC complex IV assembly during Drosophila maturation

Jiang, Y.-f.; Lin, H.-l.; Wang, L.-j.; Hsu, T.; Fu, C.

10.1101/503474 — cell biology — Posted on 2018-12-27

244 HiCluster: A Robust Single-Cell Hi-C Clustering Method Based on Convolution and Random Walk

Zhou, J.; Ma, J.; Chen, Y.; Cheng, C.; Bao, B.; Peng, J.; Sejnowski, T.; Dixon, J.; Ecker, J.

10.1101/506717 — bioinformatics — Posted on 2018-12-27

245 Motor context dominates output from Purkinje cell functional regions during reflexive visuomotor behaviors

Knogler, L.; Kist, A. M.; Portugues, R.

10.1101/432153 — neuroscience — Posted on 2018-12-27

246 The antiparasitic drug atovaquone inhibits arbovirus replication through the depletion of intracellular nucleotides.

Cifuentes Kottkamp, A.; De Jesus, E.; Grande, R.; Brown, J. K.; Jacobs, A. R.; Lim, J. K.; Stapleford, K.

10.1101/507152 — microbiology — Posted on 2018-12-27

247 Antimicrobial activity of Mycobacteriophage D29 Lysin B during Mycobacterium ulcerans infection

Fraga, A. G.; Trigo, G.; Dominguez, J.; Silva-Gomes, R.; Goncalves, C. M.; Oliveira, H.; Castro, A. G.; Azeredo, J.; Pedrosa, J.

10.1101/507129 — microbiology — Posted on 2018-12-27

248 Discovery of Novel Glycerolated Quinazolinones from Streptomyces sp. MBT27

van Wezel, G. P.; Machushynets, N.; Wu, C.; Elsayed, S.; Hankemeier, T.

10.1101/484535 — microbiology — Posted on 2018-12-27

249 Linkage analysis and haplotype phasing in experimental autopolyploid populations with high ploidy level using hidden Markov models

Mollinari, M.; Garcia, A. A. F.

10.1101/415232 — genetics — Posted on 2018-12-27

250 A gene expression atlas of embryonic neurogenesis in Drosophila reveals complex spatiotemporal regulation of lncRNAs.

McCorkindale, A. L.; Wahle, P.; Werner, S.; Jungreis, I.; Menzel, P.; Shukla, C. J.; Lopes Pereira Abreu, R.; Irizarry, R.; Meyer, I.; Kellis, M.; Zinzen, R. P.

10.1101/483461 — developmental biology — Posted on 2018-12-27

251 A multi-scale sub-voxel perfusion model to estimate diffusive capillary wall conductivity in multiple sclerosis lesions from perfusion MRI data

Koch, T.; Flemisch, B.; Helmig, R.; Wiest, R.; Obrist, D.

10.1101/507103 — bioengineering — Posted on 2018-12-27

252 Increased hippocampal GABAergic inhibition after long-term high-intensity sound exposure

Cunha, A. S.; de Deus, J. l.; Ceballos, C. C.; Leao, R. M.

10.1101/507004 — neuroscience — Posted on 2018-12-27

253 Study of the binding mechanisms between palytoxin and its aptamer by docking and molecular simulation

Hu, B.; Zhou, R.; Li, Z.; Qin, J.; Ouyang, S.; Li, Z.; Hu, W.; Wang, L.; Jiao, B.

10.1101/507087 — molecular biology — Posted on 2018-12-27

254 Temporal modulation of host aerobic glycolysis determines the outcome of M. marinum infection

Meng, L.; Xie, L.; Kan, Y.; Liu, L.; Dong, W.; Feng, J.; Yan, Y.; Peng, G.; Lu, M.; Yang, C.; Niu, C.

10.1101/507160 — microbiology — Posted on 2018-12-27

255 A novel nonsense mutation c.424G>T (p. G142X) in the first exon of XLas leading to osteopetrosis

chen, x.; Meng, Y.; Xie, Y.; Wan, S.; Li, L.; Zhang, J.; Su, B.; Yu, X.

10.1101/507111 — genetics — Posted on 2018-12-27

256 Progress towards lymphatic filariasis elimination in Ghana from 2000-2016: analysis of microfilaria prevalence data from 430 communities

Biritwum, N.-K.; Frempong, K. K.; Verver, S.; Odoom, S.; Alomatu, B.; Asiedu, O.; Kontoroupis, P.; Yeboah, A.; Hervie, E. T.; Marfo, B.; Boakye, D. A.; de Vlas, S. J.; Gyapong, J. O.; Stolk, W. A.

10.1101/507145 — epidemiology — Posted on 2018-12-27

257 Searching the optimal folding routes of a Complex Lasso protein

Perego, C.; Potestio, R.

10.1101/507079 — biophysics — Posted on 2018-12-27

258 Structural and functional impact of non- synonymous SNPs in the CST complex subunit TEN1: Structural genomics approach

Amir, M.; Kumar, V.; Mohammad, T.; Dohare, R.; Rehman, M. T.; Alajmi, M. F.; Hussain, A.; Ahmad, F.; Hassan, M. I.

10.1101/507046 — evolutionary biology — Posted on 2018-12-27

259 Clinical diagnosis of TIA or stroke and prognosis in patients with neurological symptoms: a rapid access clinic cohort

Whiteley, W. N.; Graham, C.; Bailey, D.; Hart, S.; Hutchison, A.; Sandercock, P.; Doubal, F.; Sudlow, C.; Farrall, A.; Wardlaw, J.; Dennis, M.

10.1101/507012 — epidemiology — Posted on 2018-12-27

260 miRNAs, target genes expression and morphological analysis on the heart in gestational protein-restricted offspring

Gontijo, J. A. R.; Assalin, H. B.; Boer, P. A.

10.1101/507038 — developmental biology — Posted on 2018-12-27

261 Decrypting protein surfaces by combining evolution, geometry and molecular docking

Dequeker, C.; Laine, E.; Carbone, A.

10.1101/507095 — bioinformatics — Posted on 2018-12-27

262 Co-allocation Action of Azospirillum brasilense Inoculation and Seed Priming for Improving Germination and Seedling Growth in Aged Grass Seeds

Liu, X.; Chen, Z.; Gao, Y.; Liu, Q.; Zhou, W.; Zhao, T.; Jiang, W.; Cui, X.; Cui, J.; Wang, Q.

10.1101/507020 — plant biology — Posted on 2018-12-27

263 Pedigree-based estimation of human mobile element retrotransposition rates

Feusier, J.; Watkins, W. S.; Thomas, J.; Farrell, A.; Witherspoon, D. J.; Baird, L.; Ha, H.; Xing, J.; Jorde, L. B.

10.1101/506691 — genetics — Posted on 2018-12-26

264 S3norm: simultaneous normalization of sequencing depth and signal-to-noise ratio in epigenomic data

Xiang, G.; Keller, C.; Giardine, B.; An, L.; Hardison, R.; Zhang, Y.

10.1101/506634 — bioinformatics — Posted on 2018-12-26

265 An acute immune response underlies the benefit of cardiac adult stem cell therapy

Vagnozzi, R.; Maillet, M.; Sargent, M.; Khalil, H.; Johansen, A. K.; Schwanekamp, J.; York, A. J.; Huang, V.; Nahrendorf, M.; Sadayappan, S.; Molkentin, J. D.

10.1101/506626 — cell biology — Posted on 2018-12-26

266 MAVS polymers smaller than 80 nm induce mitochondrial membrane remodeling and interferon signaling

Hwang, M.-S.; Boulanger, J.; Howe, J.; Albecka, A.; Pasche, M.; Muresan, L.; Modis, Y.

10.1101/506568 — molecular biology — Posted on 2018-12-26

267 Single-cell multi-omic profiling of chromatin conformation and DNA methylome

Lee, D.-S.; Luo, C.; Zhou, J.; Chandran, S.; Rivkin, A.; Bartlett, A.; Nery, J. R.; Fitzpatrick, C.; O'Connor, C.; Dixon, J. R.; Ecker, J. R.

10.1101/503235 — genomics — Posted on 2018-12-26

268 Not by systems alone: replicability assessment of disease expression signals

Ballouz, S.; Doerfel, M.; Crow, M.; Crain, J.; Faivre, L.; Keegan, C. E.; Kitsiou-Tzeli, S.; Tzetis, M.; Lyon, G. J.; Gillis, J.

10.1101/128439 — systems biology — Posted on 2018-12-26

269 The protective effect of Capheic acid phenyl ester on hepatic ischemia-reperfusion injury in cholestatic rats

Aslaner, A.; Cakir, T.

10.1101/502294 — pharmacology and toxicology — Posted on 2018-12-26

270 Projection layers improve deep learning models of regulatory DNA function

Hawkins-Hooker, A.; Kenlay, H.; Reid, J.

10.1101/412734 — bioinformatics — Posted on 2018-12-26

271 A Toolkit for Rapid Modular Construction of Biological Circuits in Mammalian Cells

Fonseca, J. P.; Bonny, A. R.; Kumar, G. R.; Ng, A. H.; Town, J.; Wu, Q. C.; Aslankoohi, E.; Chen, S. Y.; Harrigan, P.; Osimiri, L. C.; Kistler, A. L.; El-Samad, H.

10.1101/506188 — synthetic biology — Posted on 2018-12-26

272 CNN-based radiographic acute tibial fracture detection in the setting of open growth plates

Starosolski, Z. A.; Kan, H.; Annapragada, A. V.

10.1101/506154 — bioinformatics — Posted on 2018-12-26

273 Predicting DNA accessibility in the pan-cancer tumor genome using RNA-seq, WGS, and deep learning

Wnuk, K.; Sudol, J.; Givechian, K. B.; Soon-Shiong, P.; Rabizadeh, S.; Szeto, C.; Vaske, C.

10.1101/229385 — bioinformatics — Posted on 2018-12-26

274 Spatiotemporal Integration in Plant Tropisms

Meroz, Y.; Bastien, R.; Mahadevan, L.

10.1101/506147 — plant biology — Posted on 2018-12-26

275 Anticipatory adjustment of mechanical properties for motor stabilisation

Le Mouel, C.; Brette, R.

10.1101/506493 — neuroscience — Posted on 2018-12-26

276 Climatic limits for the present European distribution of hornbeam (Carpinus betulus), with special reference to Ukraine

Tytar, V.

10.1101/506428 — ecology — Posted on 2018-12-26

277 Urbanization drives the acoustic diversity of mangrove anurans and avifauna in Puerto Rico

Branoff, B.

10.1101/506139 — ecology — Posted on 2018-12-26

278 A Novel Animal Model Of Somatosensory-Evoked Reflex Seizures Induced By Peripheral Stimulation

Bortel, A.; Oilgram, R.; Yao, Z. S.; Shmuel, A.

10.1101/506352 — neuroscience — Posted on 2018-12-26

279 σ54 (σL) plays a central role in carbon metabolism in the industrially relevant Clostridium beijerinckii

Hocq, R.; Bouilloux-Lafont, M.; Lopes Ferreira, N.; Wasels, F.

10.1101/505099 — microbiology — Posted on 2018-12-26

280 Parallel patterns of development between independent cases of hybrid seed inviability in Mimulus

Coughlan, J. M.; Willis, J. H.

10.1101/458752 — evolutionary biology — Posted on 2018-12-26

281 Simulation of transcranial magnetic stimulation in head model with morphologically-realistic cortical neurons

Aberra, A.; Wang, B.; Grill, W. M.; Peterchev, A. V.

10.1101/506204 — bioengineering — Posted on 2018-12-26

282 Where does time go when you blink?

Grossman, S.; Guata, C.; Pesin, S.; Malach, R.; Landau, A. N.

10.1101/506279 — neuroscience — Posted on 2018-12-26

283 Anticipatory adjustments of posture allow elderly fallers to achieve a balance recovery performance equivalent to elderly non-fallers

Le Mouel, C.; Tisserand, R.; Robert, T.; Brette, R.

10.1101/506501 — neuroscience — Posted on 2018-12-26

284 A new test of value-modulated attentional bias in mice

Hornoiu, I.; Gigg, J.; Talmi, D.

10.1101/495945 — neuroscience — Posted on 2018-12-26

285 From the inside out: An epibiotic Bdellovibrio predator with an expanded genomic complement

Deeg, C. M.; Le, T. T.; Zimmer, M. M.; Suttle, C. A.

10.1101/506055 — microbiology — Posted on 2018-12-26

286 Open-Source Food: Nutrition, Toxicology, and Availability of Wild Edible Greens in the East Bay

Stark, P. B.; Miller, D.; Carlson, T.; de Vasquez, K. R.

10.1101/385864 — ecology — Posted on 2018-12-26

287 Cloud Bursting Galaxy: Federated Identity and Access Management

Jalili, V.; Afgan, E.; Taylor, J.; Goecks, J.

10.1101/506238 — bioinformatics — Posted on 2018-12-26

288 Dynamics of Spaetzle morphogen shuttling in the Drosophila embryo shapes pattern

Rahimi, N.; Averbukh, I.; Carmon, S.; Schejter, E. D.; Barkai, N.; Shilo, B.-Z.

10.1101/505925 — bioinformatics — Posted on 2018-12-26

289 TOMVi: A Tool for Overviewing Metadata Visualization

Kyoui, D.; Yamamoto, H.; Mikami, N.; Ishii, R.; Tanaka, H.; Fukuda, N.; Kawarai, T.; Ogihara, H.

10.1101/506220 — bioinformatics — Posted on 2018-12-26

290 Epistatic interactions can moderate the antigenic effect of substitutions in hemagglutinin of influenza H3N2 virus

Koel, B. F.; Burke, D. F.; van der Vliet, S.; Bestebroer, T. M.; Rimmelzwaan, G. F.; Osterhaus, A. D. M. E.; Smith, D. J.; Fouchier, R. A. M.

10.1101/506030 — microbiology — Posted on 2018-12-26

291 Comparative genomics and phylogeny of sequenced IncHI plasmids

Alvarez, S.

10.1101/334409 — microbiology — Posted on 2018-12-26

292 Mangrove leaf and root traits and their relation to urbanization

Branoff, B.

10.1101/506196 — ecology — Posted on 2018-12-26

293 ORGaNICs: A Canonical Neural Circuit Computation

Heeger, D. J.; Mackey, W. E.

10.1101/506337 — neuroscience — Posted on 2018-12-26

294 The Unique Evolutionary Trajectory and Dynamic Conformations of DR and IR/DR-coexisting Plastomes of the Early Vascular Plant Selaginellaceae (Lycophyte)

Zhang, H.-R.; Xiang, Q.-P.; Zhang, X.-C.

10.1101/505867 — genomics — Posted on 2018-12-26

295 Strong Patterns of Intraspecific Variation and Local Adaptation in Great Basin Plants Revealed Through a Review of 75 Years of Experiments

Baughman, O. W.; Agneray, A. C.; Forister, M. L.; Kilkenny, F. F.; Espeland, E. K.; Fiegener, R.; Horning, M. E.; Johnson, R. C.; Kaye, T. N.; Ott, J. E.; St Clair, J. B.; Leger, E. A.

10.1101/506089 — ecology — Posted on 2018-12-26

296 The Division of Amyloid Fibrils

Beal, D. M.; Tournus, M.; Marchante, R.; Purton, T.; Smith, D. P.; Tuite, M. F.; Doumic, M.; Xue, W.-F.

10.1101/506386 — biophysics — Posted on 2018-12-26

297 Extension of Colijn-Plazotta tree shape distance metric to unrooted trees

Morozov, A. A.

10.1101/506022 — bioinformatics — Posted on 2018-12-26

298 Impact of mitochondrial epistatic interactions on evolution of different human subpopulations

Shinde, P.; Whitwell, H. J.; Verma, R. K.; Zaikin, A.; Jalan, S.

10.1101/505818 — synthetic biology — Posted on 2018-12-26

299 C19ORF66 broadly escapes viral-induced endonuclease cleavage and restricts Kaposi Sarcoma Associated Herpesvirus (KSHV)

Rodriguez, W.; Srivastav, A.; Muller, M.

10.1101/506410 — microbiology — Posted on 2018-12-26

300 Global invasion history of the world’s most abundant pest butterfly: a citizen science population genomics study

Ryan, S. F.; Lombaert, E.; Espeset, A.; Vila, R.; Talavera, G.; Dinca, V.; Renshaw, M. A.; Eng, M. W.; Doellman, M. M.; Hornett, E. A.; Li, Y.; Pfrender, M. E.; Shoemaker, D.

10.1101/506162 — evolutionary biology — Posted on 2018-12-26

301 A bird’s white-eye shot: looking down on a new avian sex chromosome evolution

Leroy, T.; Anselmetti, Y.; Tilak, M.-K.; Berard, S.; Csukonyi, L.; Gabrielli, M.; Scornavacca, C.; Mila, B.; Thebaud, C.; Nabholz, B.

10.1101/505610 — evolutionary biology — Posted on 2018-12-26

302 A Darwinian Uncertainty Principle

Gascuel, O.; Steel, M.

10.1101/506535 — evolutionary biology — Posted on 2018-12-26

303 Data paper: FoRAGE (Functional Responses from Around the Globe in all Ecosystems) database: a compilation of functional responses for consumers and parasitoids

Uiterwaal, S. F.; Lagerstrom, I. T.; Lyon, S. R.; DeLong, J. P.

10.1101/503334 — ecology — Posted on 2018-12-26

304 ReALLEN: structural variation discovery in cancer genome by sensitive analysis of single-end reads.

Kanno, R.; Tanaka, D.; Nanamiya, H.; Isogai, T.

10.1101/506329 — bioinformatics — Posted on 2018-12-26

305 Coordinated emergence of hippocampal replay and theta sequences during post-natal development

Muessig, L.; Lasek, M.; Varsavsky, I.; Cacucci, F.; Wills, T. J.

10.1101/505636 — animal behavior and cognition — Posted on 2018-12-26

306 Microcapsuled entomopathogenic fungi against fire ants

Qiu, H.-L.; Fox, E.; Zhao, D.-Y.; Xu, J.-Z.; Qin, C.-S.

10.1101/505370 — microbiology — Posted on 2018-12-26

307 Microbiome and Antimicrobial Resistance Gene Dynamics in International Travelers

Langelier, C.; Graves, M.; Kalantar, K. L.; Caldera, S.; Durrant, R.; Fisher, M.; Backman, R.; Tanner, W.; DeRisi, J.; Leung, D.

10.1101/506394 — microbiology — Posted on 2018-12-26

308 Genome-wide association study identifies common genetic risk factors for alcohol, heroin and methamphetamine dependence

Sun, Y.; Chang, S.; Liu, Z.; Zhang, L.; Wang, F.; Yue, W.; Sun, H.; Ni, Z.; Chang, X.; Zhang, Y.; Chen, Y.; Lu, L.; Shi, J.

10.1101/505917 — genomics — Posted on 2018-12-26

309 Direct Repeats Co-occur with Few Short Dispersed Repeats in Plastid Genome of A Spikemoss, Selaginella vardei (Selaginellaceae, Lycophyta)

Zhang, H.-R.; Xiang, Q.-P.; Zhang, X.-C.

10.1101/505842 — genomics — Posted on 2018-12-26

310 Polygenic adaptation to an environmental shift: temporal dynamics of variation under Gaussian stabilizing selection and additive effects on a single trait

Thornton, K. R.

10.1101/505750 — evolutionary biology — Posted on 2018-12-26

311 Transcriptional activation of DBP by hnRNP K facilitates circadian rhythm.

Kwon, P. K.; Lee, K.-H.; Kim, J.-h.; Tae, S.; Ham, S.; Kim, H.-M.; Choi, J.-H.; Jeong, Y.-H.; Kim, S. W.; Yi, H.; Ku, H.-O.; Roh, T.-Y.; Lim, C.; Kim, K.-T.

10.1101/503771 — neuroscience — Posted on 2018-12-26

312 Gpr158 deficiency impacts hippocampal CA1 neuronal excitability, dendritic architecture, and affects spatial learning

Cetereisi, D.; Kramvis, I.; Gebuis, T.; van der Loo, R. J.; Gouwenberg, Y.; Mansvelder, H.; Li, K. W.; Smit, A. B.; Spijker, S.

10.1101/506295 — neuroscience — Posted on 2018-12-26

313 The miR-338-3p involve in response to acute radiation syndrome by targeting DYRK2 in Tibet minipig

Yujue, W.; Min, Y.; Kai, G.; Shaojie, W.; Yuguang, T.

10.1101/506444 — cancer biology — Posted on 2018-12-26

314 Small Cell Lung Cancer subtypes identified by systems-level modeling of transcription factor networks

Wooten, D.; Maddox, S.; Tyson, D.; Liu, Q.; Lim, J. S.; Sage, J.; Quaranta, V.

10.1101/506402 — systems biology — Posted on 2018-12-26

315 Prediction and control of symmetry breaking in embryoid bodies by environment and signal integration

Sagy, N.; Slovin, S.; Allalouf, M.; Pour, M.; Savyon, G.; Boxman, J.; Nachman, I.

10.1101/506543 — developmental biology — Posted on 2018-12-26

316 Cytoplasmic self-organization established by internal lipid membranes in the interplay with either actin or microtubules

Tang, S.; Renz, M.; Shemesh, T.; Driscoll, M.; Lippincott-Schwartz, J.

10.1101/506436 — cell biology — Posted on 2018-12-26

317 Complete genome sequence of a divergent strain of Tibetan frog hepatitis B virus associated to concave-eared torrent frog Odorrana tormota

Debat, H. J.; Ng, T. F. F.

10.1101/506550 — microbiology — Posted on 2018-12-26

318 CBP/EP300-dependent acetylation and stabilization of HSF2 are compromised in the rare disorder, Rubinstein-Taybi syndrome

de Thonel, A.; Ahlskog, J. K.; Abane, R.; Pires, G.; Dubreuil, V.; Bertelet, J.; Aalto, A. L.; Naceri, S.; Cordonnier, M.; Benasolo, C.; Sanial, M.; Duchateau, A.; Vihervaara, A.; Puustinen, M. C.; Miozzo, F.; Henry, M.; Bouvier, D.; Concordet, J.-P.; Fergelot, P.; Lebigot, E.; Verloes, A.; Gressens, P.; Lacombe, D.; Gobbo, J.; Garrido, C.; Westerheide, S. D.; Petitjean, M.; Taboureau, O.; Rodrigues-Lima, F.; Lancaster, M.; Passemart, S.; Saberan Djoneidi, D.; Sistonen, L.; Mezger, V.

10.1101/481457 — developmental biology — Posted on 2018-12-26

319 Non-FG-Nups, ELYS and Nup35, coordinate an ordered assembly of FG-Nups on the scaffold of the nuclear pore complex

Konishi, H. A.; Yoshimura, S. H.

10.1101/506469 — cell biology — Posted on 2018-12-26

320 Non-helical Helicobacter pylori show altered gland colonization and elicit less gastric pathology during chronic infection

Martinez, L. E.; O'Brien, V. P.; Leverich, C.; Knoblaugh, S. E.; Salama, N. R.

10.1101/505107 — microbiology — Posted on 2018-12-26

321 De novo genome assembly of the olive fruit fly (Bactrocera oleae) developed through a combination of linked-reads and long-read technologies

Djambazian, H.; Bayega, A.; Tsoumani, K. T.; Sagri, E.; Gregoriou, M.-E.; Giorda, K.; Tsiamis, G.; Bourtzis, K.; Oikonomopoulos, S.; Dewar, K.; Church, D.; Mathiopoulos, K. D.; Ragoussis, J.

10.1101/505040 — genomics — Posted on 2018-12-26

322 Higher-order epistatic networks underlie the evolutionary fitness landscape of a xenobiotic- degrading enzyme

Yang, G.; Anderson, D. W.; Baier, F.; Dohmen, E.; Hong, N.; Carr, P. D.; Kamerlin, S. C. L.; Jackson, C.; Bornberg-Bauer, E.; Tokuriki, N.

10.1101/504811 — biochemistry — Posted on 2018-12-26

323 Transgenic Mice and Pluripotent Stem Cells Express EGFP under the Control of miR-302 Promoter

Rahimi, K.; Parsa, S.; Nikzaban, M.; Mowla, S. J.; Fathi, F.

10.1101/450791 — developmental biology — Posted on 2018-12-26

324 DIAlignR provides precise retention time alignment across distant runs in DIA and targeted proteomics

Gupta, S.; Ahadi, S.; Zhou, W.; Rost, H. L.

10.1101/438309 — bioinformatics — Posted on 2018-12-26

325 Genome-wide association analysis of 350,000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.

Ek, W. E.; Rask-Andersen, M.; Karlsson, T.; Johansson, A.

10.1101/195933 — genetics — Posted on 2018-12-26

326 The interplay of structural and cellular biophysics controls clustering of multivalent molecules

Chattaraj, A.; Youngstrom, M.; Loew, L. M.

10.1101/373084 — biophysics — Posted on 2018-12-26

327 AIControl: Replacing matched control experiments with machine learning improves ChIP-seq peak identification

Hiranuma, N.; Lundberg, S. M.; Lee, S.-I.

10.1101/278762 — bioinformatics — Posted on 2018-12-26

328 Serial synapse formation through filopodial competition for synaptic seeding factors

Ozel, M. N.; Kulkarni, A.; Hasan, A.; Brummer, J.; Moldenhauer, M.; Daumann, I.-M.; Wolfenberg, H.; Dercksen, V.; Kiral, F. R.; Weiser, M.; Prohaska, S.; von Kleist, M.; Hiesinger, P. R.

10.1101/506378 — neuroscience — Posted on 2018-12-26

329 CDX4 regulates the progression of neural maturation in the spinal cord

Joshi, P.; Darr, A. J.; Skromne, I.

10.1101/177469 — developmental biology — Posted on 2018-12-26

330 A Toolkit for Rapid Modular Construction of Biological Circuits in Mammalian Cells

Fonseca, J. P.; Bonny, A. R.; Kumar, G. R.; Ng, A. H.; Town, J.; Wu, Q. C.; Aslankoohi, E.; Chen, S. Y.; Harrigan, P.; Osimiri, L. C.; Kistler, A. L.; El-Samad, H.

10.1101/506188 — synthetic biology — Posted on 2018-12-26

331 Measurements of Subthreshold and Fast Population Neuronal Activity with Genetically Encoded Calcium Indicator GCaMP-6f

Li, P.; Geng, X.; Jiang, H.; Caccavano, A.; Vicini, S.; Wu, J.-y.

10.1101/505834 — neuroscience — Posted on 2018-12-26

332 Estimating the probable cause of recurrence in Plasmodium vivax malaria: relapse, reinfection or recrudescence?

Taylor, A. R.; Watson, J. A.; Chu, C. S.; Puaprasert, K.; Duanguppama, J.; Day, N. P. J.; Nosten, F.; Neafsey, D. E.; Buckee, C. O.; Imwong, M.; White, N. J.

10.1101/505594 — epidemiology — Posted on 2018-12-25

333 A pilot study of a novel molecular host response assay to diagnose infection in patients after high-risk gastro-intestinal surgery

Verboom, D.; Koster-Brouwer, M.; Ruurda, J.; Van Hillegersberg, R.; van Berge Henegouwen, M.; Gisbertz, S.; Scicluna, B.; Bonten, M.; Cremer, O.

10.1101/505248 — epidemiology — Posted on 2018-12-25

334 The impact of rule changes on the number and severity of injuries in the NFL

Sheth, S. B.; Anandayuvaraj, D.; Patel, S. S.

10.1101/503227 — epidemiology — Posted on 2018-12-25

335 Evaluating a Primary Healthcare Centre’s Preparedness for Disasters Using the Hospital Safety Index: Lessons Learned from the 2014 Floods in Obrenovac, Serbia

Lapcevic, Z.; Mandic-Rajcevic, S.; Lepic, M.; Jovanovic, M.

10.1101/503557 — epidemiology — Posted on 2018-12-25

336 Unification of miRNA and isomiR research: the mirGFF3 format and the mirtop API

Desvignes, T.; Loher, P.; Eilbeck, K.; Ma, J.; Urgese, G.; Fromm, B.; Sydes, J.; Aparicio-Puerta, E.; Barrera, V.; Espin, R.; Londin, E.; Telonis, A. G.; Ficarra, E.; Friedlander, M. R.; Postlethwait, J. H.; Rigoutsos, I.; Hackenberg, M.; Vlachos, I. S.; Halushka, M. K.; Pantano, L.

10.1101/505222 — bioinformatics — Posted on 2018-12-25

337 The ecnA antitoxin is not only important for human pathogens: Evidences of its role in the plant pathogen Xathomonas citri subsp. citri

Granato, L. M.; Picchi, S. C.; Andrade, M. d. O.; Martins, P. M. M.; Takita, M. A.; Machado, M. A.; de Souza, A. A.

10.1101/505081 — microbiology — Posted on 2018-12-25

338 A wheat/rye polymorphism affects seminal root length and is associated with drought and waterlogging tolerance

Howell, T.; Moriconi, J. I.; Zhao, X.; Hegarty, J.; Fahima, T.; Santa-Maria, G.; Dubcovsky, J.

10.1101/463281 — plant biology — Posted on 2018-12-25

339 Structure of the tripartite motif of KAP1/TRIM28 identifies molecular interfaces required for transcriptional silencing of retrotransposons

Stoll, G. A.; Oda, S.-i.; Chong, Z.-S.; Yu, M.; McLaughlin, S. H.; Modis, Y.

10.1101/505677 — biochemistry — Posted on 2018-12-25

340 The role of Selenoprotein N in the differentiation of erythroid progenitors during stress erythropoiesis

Paulson, R. F.; Nettleford, S. K.; Liao, C.; Chen, Y.; Hao, S.; Blatzinger, M.; Thami-Braye, M.; Lescure, A.; Prabhu, K. S.

10.1101/506345 — developmental biology — Posted on 2018-12-25

341 The Salivary Microbiome: Analysis of by Pyrosequencing and the Relationship with Helicobacter pylori Infection

Ji, Y.; Liang, X.; Lu, H.

10.1101/505115 — microbiology — Posted on 2018-12-25

342 A Regulatory Loop between the Retinoid-Related Orphan Nuclear Receptor NHR-23 and let-7 family microRNAs Modulates the C. elegans Molting Cycle

Patel, R.; Frand, A. R.

10.1101/506261 — developmental biology — Posted on 2018-12-25

343 Activation of NIX-mediated mitophagy and replication by an interferon regulatory factor homologue of human herpesvirus

Vo, M. T.; Smith, B. J.; Nicholas, J.; Choi, Y. B.

10.1101/506113 — microbiology — Posted on 2018-12-25

344 ADHD Symptoms are Associated with the Modular Structure of Intrinsic Brain Networks in a Representative Sample of Healthy Adults

Hilger, K.; Fiebach, C. J.

10.1101/505891 — neuroscience — Posted on 2018-12-25

345 Inhibition of EZH2 ameliorates lupus-like disease in MRL/lpr mice

Rohraff, D. M.; He, Y.; Farkash, E. A.; Schonfeld, M.; Tsou, P.-S.; Sawalha, A. H.

10.1101/500918 — immunology — Posted on 2018-12-25

346 RNA sequencing identifies dysregulated circular RNAs in early-stage breast cancer

Arvinden, V. R.; Arinagiri Kuha, D. M. R.; Balaiah, M.; Ramanathan, P.; Sundersingh, S.; Velusami, S.; Thangarajan, R.; Herceg, Z.; Mani, S.

10.1101/506246 — cancer biology — Posted on 2018-12-25

347 How People Initiate Energy Optimization and Converge on Their Optimal Gaits

Selinger, J.; Wong, J.; Simha, S.; Donelan, M.

10.1101/503433 — neuroscience — Posted on 2018-12-25

348 Machine-learning for cluster analysis of localization microscopy data.

Williamson, D. J.; Burn, G. L.; Griffie, J.; Davis, D. M.; Owen, D. M.

10.1101/505719 — cell biology — Posted on 2018-12-25

349 Multiplexed detection of RNA using MERFISH and branched DNA amplification

Xia, C.; Babcock, H. P.; Moffitt, J. R.; Zhuang, X.

10.1101/505784 — cell biology — Posted on 2018-12-25

350 Affective flexibility without perceptual awareness

Homan, P.; Lau, H. L.; Levy, I.; Raio, C. M.; Bach, D. R.; Carmel, D.; Schiller, D.

10.1101/505545 — neuroscience — Posted on 2018-12-25

351 Conditions for numerically accurate TMS electric field simulation

Gomez, L.; Dannhauer, M.; Koponen, L.; Peterchev, A. V.

10.1101/505412 — bioengineering — Posted on 2018-12-25

352 An Analysis of the full song of five free-living urban European Blackbirds (Turdus merula); a network approach.

Kortmulder, K.

10.1101/505206 — animal behavior and cognition — Posted on 2018-12-25

353 Wave-like activity patterns in the neuropil of striatal cholinergic interneurons in freely moving mice represent their collective spiking dynamics

Rehani, R.; Atamna, Y.; Tiroshi, L.; Chiu, W.-H.; Aceves Buendia, J. d. J.; Martins, G. J.; Jacobson, G. A.; Goldberg, J. A.

10.1101/404467 — neuroscience — Posted on 2018-12-25

354 Structures of the Human Spliceosomes Before and After Release of the Ligated Exon

Zhang, X.; Zhan, X.; Yan, C.; Zhang, W.; Liu, D.; Lei, J.; Shi, Y.

10.1101/496695 — biochemistry — Posted on 2018-12-25

355 Recombination between co-infecting herpesviruses occurs where replication compartments coalesce

Tomer, E.; Cohen, E. M.; Drayman, N.; Afriaat, A.; Weitzman, M. D.; Zaritsky, A.; Kobiler, O.

10.1101/345918 — microbiology — Posted on 2018-12-25

356 The Genomic Landscape of Centromeres in Various Cancers

Saha, A.; Mourad, M.; Kaplan, M. H.; Chefetz, I.; Malek, S. N.; Buckanovich, R.; Markovitz, D. M.; Contreras-Galindo, R.

10.1101/505800 — genomics — Posted on 2018-12-25

357 Reproduction associated gene expression under predation risk in Daphnia - a comparative transcriptomic approach

Tams, V.; Nickel, J.; Ehring, A.; Cordellier, M.

10.1101/503904 — zoology — Posted on 2018-12-25

358 RNA Polymerase II Independent Recruitment of SPT6 at Transcription Start Sites in Arabidopsis

Chen, C.; Shu, J.; Li, C.; Thapa, R. K.; Nguyen, V.; Yu, K.; Yuan, Z.; Kohalmi, S. E.; Liu, J.; Marsolais, F.; Huang, S.; Cui, Y.

10.1101/506063 — molecular biology — Posted on 2018-12-25

359 NK cells acquire epigenetic memory of LPS-induced systemic inflammation

Rasid, O.; Chevalier, C.; Camarasa, T.; Fitting, C.; Cavaillon, J.-M.; Hamon, M. A.

10.1101/506014 — immunology — Posted on 2018-12-25

360 Resistance to ALK targeting therapies as a gradual Darwinian adaptation to inhibitor specific selective pressures

Vander Velde, R.; Yoon, N.; Marusyk, V.; Dhawan, A.; Balynska, O.; Desai, B.; Peral, D.; Myroshnychenko, D.; Poleszhuk, J.; Liu, K.; Mian, O.; Abazeed, M.; Haura, E.; Scott, J.; Marusyk, A.

10.1101/504837 — cancer biology — Posted on 2018-12-25

361 Ultra-Efficient Short Read Sequencing of Immune Receptor Repertoires

Montagne, J.; Zheng, X.; Pinal-Fernandez, I.; Milisenda, J.; Christopher-Stine, L.; Lloyd, T.; Mammen, A.; Larman, H. B.

10.1101/494062 — immunology — Posted on 2018-12-24

362 A forest model intercomparison framework and application at two temperate forests along the East Coast of the United States

Erickson, A.; Strigul, N.

10.1101/464578 — ecology — Posted on 2018-12-24

363 Clustering of the structures of protein kinase activation loops: A new nomenclature for active and inactive kinase structures

Modi, V.; Dunbrack, R. L.

10.1101/395723 — bioinformatics — Posted on 2018-12-24

364 A non-catalytic function of carbonic anhydrase IX contributes to the glycolytic phenotype and pH regulation in human breast cancer cells

Mboge, M. Y.; Chen, Z.; Khokhar, D.; Wolff, A.; Ai, L.; Heldermon, C. D.; Boxdag, M.; Carta, F.; Supuran, C. T.; Brown, K. D.; Mckenna, R.; Frost, C. J.; Frost, S. C.

10.1101/505644 — cancer biology — Posted on 2018-12-24

365 High-dimensional Bayesian network inference from systems genetics data using genetic node ordering

Wang, L.; Audenaert, P.; Michoel, T.

10.1101/501460 — systems biology — Posted on 2018-12-24

366 Honey bee parasitic mite contains the sensory organ expressing ionotropic receptors with conserved functions

Lei, J.; Liu, Q.; Kadowaki, T.

10.1101/505529 — physiology — Posted on 2018-12-24

367 Symptoms of fatigue and depression is reflected in altered default mode network connectivity in multiple sclerosis

Hogestol, E. A.; Nygaard, G. O.; Alnaes, D.; Beyer, M. K.; Westlye, L. T.; Harbo, H. F.

10.1101/505974 — neuroscience — Posted on 2018-12-24

368 Population extinctions driven by climate change, population size, and time since observation may make rare species databases inaccurate

Kaye, T.; Bahm, M. A.; Thorpe, A. S.; Gray, E. C.; Pfingsten, I.; Waddell, C.

10.1101/506006 — ecology — Posted on 2018-12-24

369 Identifying Context-specific Network Features for CRISPR-Cas9 Targeting Efficiency Using Accurate and Interpretable Deep Neural Network

Liu, Q.; He, D.; Xie, L.

10.1101/505602 — bioinformatics — Posted on 2018-12-24

370 A 3.8 A Resolution Cryo-EM Structure of a Small Protein Bound to a Modular Imaging Scaffold

Liu, Y.; Huynh, D.; Yeates, T. O.

10.1101/505792 — biochemistry — Posted on 2018-12-24

371 Real-Time Point Process Filter for Multidimensional Decoding Problems Using Mixture Models

Yousefi, A.; Rezaei, M. R.; Arai, K.; Frank, L. M.; Eden, U. T.

10.1101/505289 — bioinformatics — Posted on 2018-12-24

372 Alpha-band oscillations reflect external spatial coding for tactile stimuli in sighted, but not in congenitally blind humans

Schubert, J. T. W.; Buchholz, V. N.; Foecker, J.; Engel, A. K.; Roder, B.; Heed, T.

10.1101/442384 — neuroscience — Posted on 2018-12-24

373 A New Uranium Bioremediation Approach using Radio-tolerant Deinocoocus radiodurans Biofilm

Manobala, T.; Shukla, S.; Rao, T. S.; Kumar, M. D.

10.1101/503896 — microbiology — Posted on 2018-12-24

374 p62-mediated Selective Autophagy Endows Virus-transformed Cells with Insusceptibility to DNA Damage under Oxidative Stress

Ning, S.; Wang, L.; Howell, M.; Sparks-Wallace, A.; Hawkins, C.; Nicksic, C.; Kohne, C.; Hall, K.; Moorman, J.; Yao, Z. Q.

10.1101/502823 — cancer biology — Posted on 2018-12-24

375 Filamentous calcareous alga provides a substrate for coral competitive macroalgae in the degraded lagoon of Dongsha Atoll, Taiwan

Nieder, C.; Chen, C. A.; Liu, S.-L.

10.1101/363796 — ecology — Posted on 2018-12-24

376 Nitric oxide radicals are emitted by wasp eggs to kill mold fungi

Strohm, E.; Herzner, G.; Ruther, J.; Kaltenpoth, M.; Engl, T.

10.1101/495085 — ecology — Posted on 2018-12-24

377 Humans strategically shift decision bias by flexibly adjusting sensory evidence accumulation

Kloosterman, N. A.; de Gee, J. W.; Werkle-Bergner, M.; Lindenberger, U.; Garrett, D. D.; Fahrenfort, J. J.

10.1101/229989 — neuroscience — Posted on 2018-12-24

378 A systems view of spliceosomal assembly and branchpoints with iCLIP

Briese, M.; Haberman, N.; Sibley, C.; Chakrabarti, A.; Wang, Z.; Konig, J.; Perera, D.; Wickramasinghe, V.; Venkitaraman, A.; Luscombe, N.; Smith, C.; Curk, T.; Ule, J.

10.1101/353599 — genomics — Posted on 2018-12-24

379 R51Q SNX10 induces osteopetrosis by promoting uncontrolled fusion of monocytes to form giant, non-functional osteoclasts

Barnea, M.; Stein, M.; Winograd-Katz, S.; Shalev, M.; Arman, E.; Brenner, O.; Thalji, F.; Kanaan, M.; Elinav, H.; Stepensky, P.; Geiger, B.; Tuckermann, J.; Elson, A.

10.1101/332551 — cell biology — Posted on 2018-12-24

380 Comparative genomics and phylogeny of sequenced IncHI plasmids

Alvarez, S.

10.1101/334409 — microbiology — Posted on 2018-12-24

381 Microbiome composition comparison in oral and atherosclerotic plaque from patients with and without periodontitis

Isoshima, D.; Yamashiro, K.; Matsunaga, K.; Taniguchi, M.; Matsubara, T.; Tomida, S.; Omori, K.; Yamamoto, T.; Takashiba, S.

10.1101/505982 — microbiology — Posted on 2018-12-24

382 Actin clearance promotes polarized dynein accumulation at the immunological synapse

Sanchez, E.; Liu, X.; Huse, M.

10.1101/505990 — immunology — Posted on 2018-12-24

383 Fragmentation Through Polymerization (FTP): A New Method to Fragment DNA for Next-Generation Sequencing

Ignatov, K. B.; Blagodatskikh, K. A.; Shcherbo, D. S.; Kramarova, T.; Monakhova, Y. A.; Kramarov, V. M.

10.1101/505966 — molecular biology — Posted on 2018-12-24

384 The mutational landscape of normal human endometrial epithelium

Moore, L.; Leongamornlert, D.; Coorens, T. H.; Sanders, M. A.; Ellis, P.; Dawson, K.; Maura, F.; Nangalia, J.; Tarpey, P. S.; Brunner, S. F.; Lee-Six, H.; Rahbari, R.; Moody, S.; Hooks, Y.; Mahbubani, K.; Jimenez-Linan, M.; Brosens, J. J.; Iacobuzio-Donahue, C.; Martincorena, I.; Saeb-Parsy, K.; Campbell, P. J.; Stratton, M. R.

10.1101/505685 — cancer biology — Posted on 2018-12-24

385 Human cytomegalovirus genomes sequenced directly from clinical material: variation, multiple-strain infection, recombination and mutation

Suarez, N. M.; Wilkie, G. S.; Hage, E.; Camiolo, S.; Holton, M.; Hughes, J.; Maabar, M.; Sreenu, V. B.; Dhingra, A.; Gompels, U. A.; Wilkinson, G. W.; Baldanti, F.; Milena, F.; Lilleri, D.; Arossa, A.; Ganzenmueller, T.; Gerna, G.; Hubacek, P.; Schulz, T. F.; Wolf, D.; Zavattoni, M.; Davison, A. J.

10.1101/505735 — microbiology — Posted on 2018-12-23

386 Determining the link between alpha-gal-containing antigens in North American ticks and red meat allergy

Crispell, G.; Commins, S.; Archer-Hartmann, S. A.; Choudhary, S.; Dharmarajan, G.; Azadi, P.; Karim, S.

10.1101/505776 — immunology — Posted on 2018-12-23

387 Partitioning the genetic architecture of amyotrophic lateral sclerosis

Broce, I. J.; Fan, C. C.; Olney, N. T.; Lomen-Hoerth, C.; Finkbeiner, S.; Atassi, N.; Cudkowicz, M. E.; Yokoyama, J. S.; Kao, A.; Dillon, W. P.; Glastonbury, C. M.; Hess, C. P.; van Rheenen, W.; Veldink, J. H.; Al-Chalabi, A.; Andreassen, O. A.; Dale, A. M.; Seeley, W. W.; Sugrue, L. P.; Karch, C. M.; Miller, B. L.; Desikan, R. S.

10.1101/505693 — genetics — Posted on 2018-12-23

388 Revealing Hi-C subcompartments by imputing high-resolution inter-chromosomal chromatin interactions

Xiong, K.; Ma, J.

10.1101/505503 — bioinformatics — Posted on 2018-12-23

389 High gene dosage changes transcriptional regulation of genetic structures and contributes to diversity and heterogeneity

Liu, D.; Hannam, R.; Albergante, L.

10.1101/505446 — systems biology — Posted on 2018-12-23

390 Increased human cytomegalovirus multiple-strain infections and genome diversity in breast milk from HIV-positive women

Suarez, N.; Musonda, K. G.; Escriva, E.; Njenga, M.; Agbueze, A.; Davison, A. J.; Gompels, U. A.

10.1101/493742 — genomics — Posted on 2018-12-23

391 The genomic landscape of western South America: Andes, Amazonia and Pacific Coast

Barbieri, C.; Barquera, R.; Arias, L.; Sandoval, J. R.; Acosta, O.; Zurita, C.; Aguilar-Campos, A.; Tito-Alvarez, A. M.; Serrano-Osuna, R.; Gray, R.; Heggarty, P.; Shimizu, K. K.; Fujita, R.; Stoneking, M.; Pugach, I.; Fehren-Schmitz, L.

10.1101/505628 — genetics — Posted on 2018-12-23

392 Maternal Obesity Enhances Oocyte Chromosome Abnormalities Associated With Aging

Yun, Y.; Wei, Z.; Hunter, N.

10.1101/505511 — genetics — Posted on 2018-12-23

393 Tip rates, phylogenies, and diversification: what are we estimating, and how good are the estimates?

Title, P. O.; Rabosky, D.

10.1101/369124 — evolutionary biology — Posted on 2018-12-23

394 Chronology of motor-mediated microtubule streaming

Ravichandran, A.; Duman, O.; Hoore, M.; Saggiorato, G.; Vliegenthart, G. A.; Auth, T.; Gompper, G.

10.1101/505669 — biophysics — Posted on 2018-12-23

395 Bioprinted pluripotent stem cell-derived kidney organoids provide opportunities for high content screening.

Higgins, J. W.; Chambon, A.; Bishard, K.; Hartung, A.; Arndt, D.; Brugnano, J.; Xuan Er, P.; Lawlor, K. T.; Vanslambrouck, J. M.; Wilson, S.; Combes, A. N.; Howden, S. E.; Tan, K. S.; Kumar, S. V.; Hale, L. J.; Shepherd, B.; Pentoney, S.; Presnell, S. C.; Chen, A. E.; Little, M. H.

10.1101/505396 — cell biology — Posted on 2018-12-23

396 Namdinator - Automatic Molecular Dynamics flexible fitting of structural models into cryo-EM and crystallography experimental maps

Kidmose, R. T.; Juhl, J.; Nissen, P.; Boesen, T.; Karlsen, J. L.; Pedersen, B. P.

10.1101/501197 — biophysics — Posted on 2018-12-23

397 Optical imaging of single protein size, charge, mobility, binding and conformational change

Ma, G.; Zhu, H.; Wan, Z.; Yang, Y.; Wang, S.; Tao, N.

10.1101/505404 — biophysics — Posted on 2018-12-23

398 From skylight input to behavioural output: a computational model of the insect polarised light compass

Gkanias, E.; Risse, B.; Mangan, M.; Webb, B.

10.1101/504597 — animal behavior and cognition — Posted on 2018-12-23

399 Molecular Process Diagram: a precise, scalable and compact visualization of rule-based models

Vasilescu, D.; Greene, J.; Schaff, J. C.; Moraru, I. I.; Blinov, M. L.

10.1101/503359 — systems biology — Posted on 2018-12-23

400 Extreme selective sweeps displaced archaic admixture across the human X chromosome around 50,000 years ago

Skov, L.; Macia, M. C.; Lucotte, E.; Cavassim, M. I. A.; Castellano, D.; Mailund, T.; Schierup, M. H.; Munch, K.

10.1101/503995 — genomics — Posted on 2018-12-23

401 Geometric constraints in protein folding

Molkenthin, N.; Muehle, S.; Mey, A.; Timme, M.

10.1101/504399 — biophysics — Posted on 2018-12-23

402 CRISPRa-mediated Kcna1 upregulation decreases neuronal excitability and suppresses seizures in a rodent model of temporal lobe epilepsy

Colasante, G.; Qiu, Y.; Di Berardino, C.; Massimino, L.; Cornford, J.; Snowball, A.; Jones, S. P.; Giannelli, S.; Lieb, A.; Schorge, S.; Kullmann, D. M.; Broccoli, V.; Lignani, G.

10.1101/431015 — neuroscience — Posted on 2018-12-23

403 Is faster always better? The walking speed-dependency of gait variability in bilateral vestibulopathy

McCrum, C.; Lucieer, F.; van de Berg, R.; Willems, P.; Perez Fornos, A.; Guinand, N.; Karamanidis, K.; Kingma, H.; Meijer, K.

10.1101/413955 — neuroscience — Posted on 2018-12-23

404 Powerful statistical method to detect disease associated genes using publicly available GWAS summary data

Zhang, J.; Zhao, Z.; Guo, X.; Guo, B.; Wu, B.

10.1101/478321 — genetics — Posted on 2018-12-23

405 Dissecting the dynamics of signaling events in the BMP, WNT, and NODAL cascade during self-organized fate patterning in human gastruloids.

Chhabra, S.; Liu, L.; Goh, R.; Warmflash, A.

10.1101/440164 — developmental biology — Posted on 2018-12-23

406 Unsupervised discovery of temporal sequences in high-dimensional datasets, with applications to neuroscience

Mackevicius, E. L.; Bahle, A. H.; Williams, A. H.; Gu, S.; Denissenko, N. I.; Goldman, M. S.; Fee, M. S.

10.1101/273128 — neuroscience — Posted on 2018-12-23

407 GeTFEP: A general transfer free energy profile of transmembrane proteins

Tian, W.; Naveed, H.; Lin, M.; Liang, J.

10.1101/191650 — biophysics — Posted on 2018-12-23

408 Real-Time Point Process Filter for Multidimensional Decoding Problems Using Mixture Models

Yousefi, A.; Rezaei, M. R.; Arai, K.; Frank, L. M.; Eden, U. T.

10.1101/505289 — bioinformatics — Posted on 2018-12-23

409 Optimizing optogenetic stimulation protocols in auditory corticofugal neurons based on closed-loop spike feedback

Vila, C.-H.; Williamson, R. S.; Hancock, K. E.; Polley, D. B.

10.1101/505214 — neuroscience — Posted on 2018-12-23

410 Saturation mutagenesis of disease-associated regulatory elements

Kircher, M.; Xiong, C.; Martin, B.; Schubach, M.; Inoue, F.; Bell, R. J.; Costello, J. F.; Shendure, J.; Ahituv, N.

10.1101/505362 — genetics — Posted on 2018-12-23

411 Evolutionary constraints in NAL superfamily protein: Secondary structural segment trailing the beta strand 5 and alpha helix 10

Prem Kumar, M. K.; Manoharan, P.

10.1101/505230 — evolutionary biology — Posted on 2018-12-23

412 Genomic perspectives on adaptation and conservation in the endangered long-tailed goral (Naemorhedus caudatus).

Weber, J. A.; Chung, O.; Kim, J.; Jun, J.; Lee, H.; Jho, S.; Cho, Y. S.; Kim, D.-S.; Paek, W. k.; Kim, S.; Lee, H.; Lee, S.; Edwards, J. S.; Cook, J. A.; An, J.; Bhak, J.

10.1101/505156 — bioinformatics — Posted on 2018-12-23

413 Transcriptional Circuit Fragility Influences HIV Proviral Fate

Morton, E. L.; Forst, C. V.; Zheng, Y.; De Paula-Silva, A. B.; Ramirez, N.-G. P.; Planelles, V.; D'Orso, I.

10.1101/504969 — molecular biology — Posted on 2018-12-23

414 From Metapopulation to Metacommunity and the Complications of Community Structure

Hajian-Forooshani, Z.; Schmitt, L.; Medina, N.; Vandermeer, J.

10.1101/504670 — ecology — Posted on 2018-12-23

415 Target Binding and Sequence Prediction With LSTMs

Teti, M.; StClair, R.; Pavlovic, M.; Barenholtz, E.; Hahn, W.

10.1101/504415 — bioinformatics — Posted on 2018-12-23

416 Stimulus salience determines the defensive behaviors elicited by aversively conditioned compound auditory stimuli

Hersman, S.; Anthony, T. E.

10.1101/505263 — animal behavior and cognition — Posted on 2018-12-23

417 Digital imaging to evaluate root system architectural changes associated with soil biotic factors

Mattupalli, C.; Seethepalli, A.; York, L. M.; Young, C. A.

10.1101/505321 — plant biology — Posted on 2018-12-23

418 Prior Perceptual-Cognitive Training Builds Mental Resistance During Acute Physical Fatigue In Professional Rugby Athletes

Faubert, J.; Barthes, S.

10.1101/505313 — neuroscience — Posted on 2018-12-23

419 The quagga mussel genome and the evolution of freshwater tolerance

Calcino, A. D.; de Oliveira, A. L.; Simakov, O.; Schwaha, T.; Zieger, E.; Wollesen, T.; Wanninger, A.

10.1101/505305 — genomics — Posted on 2018-12-23

420 The impact of natural selection on the evolution and function of placentally expressed galectins

Ely, Z. A.; Moon, J. M.; Sliwoski, G. R.; Sangha, A. K.; Shen, X.-X.; LaBella, A. L.; Meiler, J.; Capra, J. A.; Rokas, A.

10.1101/505339 — evolutionary biology — Posted on 2018-12-23

421 Pleistocene Mammal Population Fluctuation Patterns Inferred by Their Genomes

Liu, Y.; Liu, B.; Pan, X.; Shi, Q.; Xiao, Z.; Li, S.; Li, S.

10.1101/505131 — bioinformatics — Posted on 2018-12-23

422 Experimental colitis drives enteric alpha-synuclein accumulation and Parkinson-like brain pathology

Grathwhohl, S.; Quansah, E.; Maroof, N.; Steiner, J. A.; Spycher, L.; Benmansour, F.; Duran-Pacheco, G.; Siebourg-Polster, J.; Oroszlan-Szovik, K.; Remy, H.; Haenggi, M.; Stawiski, M.; Sehlhausen, M.; Maliver, P.; Wolfert, A.; Emrich, T.; Madaj, Z.; Escobar Galvis, M. L.; Mueller, C.; Herrmann, A.; Brundin, P.; Britschgi, M.

10.1101/505164 — neuroscience — Posted on 2018-12-23

423 Faster is better: Visual responses to motion are stronger for higher refresh rates

A.Khoei, M.; Galluppi, F.; Sabatier, Q.; Pouget, P.; R Cottereau, B.; Benosman, R.

10.1101/505354 — neuroscience — Posted on 2018-12-23

424 Full Atomistic Model Of Prion Structure And Conversion

Spagnolli, G.; Rigoli, M.; Orioli, S.; Sevillano, A. M.; Faccioli, P.; Wille, H.; Biasini, E.; Requena, J. R.

10.1101/505271 — biochemistry — Posted on 2018-12-22

425 The FXR2P low complexity domain drives assembly of multiple fibril types with differing ribosome association in neurons

Stackpole, E. E.; Akins, M. R.; Ivshina, M.; Murthy, A. C.; Fawzi, N. L.; Fallon, J. R.

10.1101/505255 — neuroscience — Posted on 2018-12-22

426 Shaping the zebrafish myotome by differential friction and active stress

Tlili, S.; Yin, J.; Rupprecht, J.-F.; Weissbart, G.; Prost, J.; Saunders, T. E.

10.1101/505123 — biophysics — Posted on 2018-12-22

427 Structures of the PKA RIα holoenzyme with the FLHCC driver J-PKAcα or wild type PKAcα

Cao, B.; Lu, T.-W.; Martinez Fiesco, J.; Tomasini, M.; Fan, L.; Simon, S.; Taylor, S.; Zhang, P.

10.1101/505347 — biochemistry — Posted on 2018-12-22

428 Decreased Inter Trial Phase Coherence of Steady-State Visual Evoked Responses in Sleep Deprivation

Eidelman-Rothman, M.; Ben-Simon, E.; Freche, D.; Keil, A.; Hendler, T.; Levit-Binnun, N.

10.1101/471730 — neuroscience — Posted on 2018-12-22

429 Immunological Diversity with Similarity

Arora, R.; Burke, H. M.; Arnaout, R.

10.1101/483131 — immunology — Posted on 2018-12-22

430 MAP7 family proteins regulate kinesin-1 recruitment and activation

Hooikaas, P. J.; Martin, M.; Muhlethaler, T.; Kuijntjes, G.-J.; Peeters, C. A. E.; Katrukha, E. A.; Ferrari, L.; Stucchi, R.; Verhagen, D. G. F.; van Riel, W. E.; Grigoriev, I.; Altelaar, A. F. M.; Hoogenraad, C. C.; Rudiger, S. G. D.; Steinmetz, M. O.; Kapitein, L. C.; Akhmanova, A.

10.1101/388512 — cell biology — Posted on 2018-12-22

431 Modeling meiotic chromosome pairing: increased fidelity from a tug of war between telomere forces and a pairing-based Brownian ratchet

Marshall, W. F.; Fung, J. C.

10.1101/332767 — biophysics — Posted on 2018-12-22

432 scAlign: a tool for alignment, integration and rare cell identification from scRNA-seq data

Johansen, N.; Quon, G.

10.1101/504944 — bioinformatics — Posted on 2018-12-22

433 Motor skill learning leads to the increase of planning horizon

Bashford, L.; Kobak, D.; Diedrichsen, J.; Mehring, C.

10.1101/505198 — neuroscience — Posted on 2018-12-22

434 Simultaneous profiling of chromatin accessibility and methylation on human cell lines with nanopore sequencing

Lee, I.; Razaghi, R.; Gilpatrick, T.; Sadowski, N.; Sedlazeck, F.; Timp, W.

10.1101/504993 — genomics — Posted on 2018-12-22

435 Long-range single-molecule mapping of chromatin accessibility in eukaryotes

Shipony, Z.; Marinov, G. K.; Swaffer, M. P.; Sinott-Armstrong, N. A.; Skotheim, J. M.; Kundaje, A.; Greenleaf, W. J.

10.1101/504662 — genomics — Posted on 2018-12-22

436 DeepCell 2.0: Automated cloud deployment of deep learning models for large-scale cellular image analysis

Bannon, D.; Moen, E.; Borba, E.; Ho, A.; Camplisson, I.; Chang, B.; Osterman, E.; Graf, W.; Van Valen, D.

10.1101/505032 — systems biology — Posted on 2018-12-22

437 Experimental colitis drives enteric alpha-synuclein accumulation and Parkinson-like brain pathology

10.1101/505164 — neuroscience — Posted on 2018-12-22

438 CALCIUM-INDUCED DIFFERENTIATION IN NORMAL HUMAN COLONOID CULTURES: Cell-cell / cell-matrix adhesion, barrier formation and tissue integrity

Attili, D.; McClintock, S. D.; Rizvi, A. H.; Pandya, S.; Rehman, H.; Nadeem, D. M.; Richter, A.; Thomas, D.; Dame, M. K.; Turgeon, D. K.; Varani, J.; Aslam, M. N.

10.1101/505016 — molecular biology — Posted on 2018-12-22

439 Sex-dependent dominance maintains migration supergene in rainbow trout

Pearse, D. E.; Barson, N. J.; Nome, T.; Gao, G.; Campbell, M. A.; Abadia-Cardoso, A.; Anderson, E. C.; Rundio, D. E.; Williams, T. H.; Naish, K. A.; Moen, T.; Liu, S.; Kent, M.; Minkley, D. R.; Rondeau, E. B.; Brieuc, M. S. O.; Sandve, S. R.; Miller, M. R.; Cedillo, L.; Baruch, K.; Hernandez, A. G.; Ben-Zvi, G.; Shem-Tov, D.; Barad, O.; Kuzishchin, K.; Garza, J. C.; Lindley, S. T.; Koop, B. F.; Thorgaard, G. H.; Palti, Y.; Lien, S.

10.1101/504621 — evolutionary biology — Posted on 2018-12-22

440 Computational Correction of Spatially-Variant Optical Aberrations in 3D Single Molecule Localization Microscopy

Yan, T.; Richardson, C. J.; Zhang, M.; Gahlmann, A.

10.1101/504712 — biophysics — Posted on 2018-12-22

441 Structural basis of eIF2B-catalyzed GDP exchange and phosphoregulation by the integrated stress response

Anand, A. A.; Kenner, L. R.; Nguyen, H. C.; Myasnikov, A. G.; Klose, C. J.; McGeever, L. A.; Tsai, J. C.; Miller-Vedam, L. E.; Walter, P.; Frost, A.

10.1101/504654 — biochemistry — Posted on 2018-12-22

442 Causal influences of brain metabolic activity reveal interregional progressions in normal aging

Di, X.; Wolfer, M.; Amend, M.; Wehrl, H.; Ionescu, T. M.; Pichler, B. J.; Biswal, B. B.; Alzheimer's Disease Neuroimaging Initiative,

10.1101/490292 — neuroscience — Posted on 2018-12-22

443 Quantum energy levels of glutamate modulate neural biophotonic signals

Han, Z.; Chai, W.; Wang, Z.; Xiao, F.; Dai, J.

10.1101/505024 — neuroscience — Posted on 2018-12-22

444 Inadequate dried blood spot samples for Early Infant Diagnosis, how common and what are the reasons for rejection in Zimbabwe?

Chiku, C.; Zolfo, M.; Senkoro, M.; Mabhala, M.; Tweya, H.; Musasa, P.; Shukusho, F. D.; Mazarura, E.; Mushavi, A.; Mangwanya, D.

10.1101/502500 — molecular biology — Posted on 2018-12-22

445 Novel cytokine interactions identified during perturbed hematopoiesis

Krieger, M. S.; Moreau, J. M.; Zhang, H.; Chien, M.; Zehnder, J. L.; Nowak, M. A.; Craig, M.

10.1101/484170 — immunology — Posted on 2018-12-22

446 Anatomical diversification of a skeletal novelty in bat feet

Stanchak, K. E.; Arbour, J. H.; Santana, S. E.

10.1101/490854 — evolutionary biology — Posted on 2018-12-22

447 Measuring Granger-causal effects in multivariate time series by system editing

Pascual-Marqui, R. D.; Biscay, R. J.; Bosch-Bayard, J.; Faber, P.; Kinoshita, T.; Kochi, K.; Milz, P.; Nishida, K.; Yoshimura, M.

10.1101/504068 — neuroscience — Posted on 2018-12-22

448 Salivary proteins of a gall-inducing aphid and their impact on early gene responses of susceptible and resistant host-plant genotypes

Portillo Lemus, L.; Tricard, J.; Duclercq, J.; Coulette, Q.; Giron, D.; Hano, C.; Huguet, E.; Lamblin, F.; Cherqui, A.; Salle, A.

10.1101/504613 — ecology — Posted on 2018-12-22

449 p62-mediated Selective Autophagy Endows Virus-transformed Cells with Insusceptibility to DNA Damage under Oxidative Stress

Ning, S.; Wang, L.; Howell, M.; Sparks-Wallace, A.; Hawkins, C.; Nicksic, C.; Kohne, C.; Hall, K.; Moorman, J.; Yao, Z. Q.

10.1101/502823 — cancer biology — Posted on 2018-12-22

450 Structures of the Human Spliceosomes Before and After Release of the Ligated Exon

Zhang, X.; Zhan, X.; Yan, C.; Zhang, W.; Liu, D.; Lei, J.; Shi, Y.

10.1101/496695 — biochemistry — Posted on 2018-12-22

451 The implied motion aftereffect changes decisions, but not confidence

Gallagher, R.; Suddendorf, T.; Arnold, D. H.

10.1101/498048 — neuroscience — Posted on 2018-12-22

452 Tracking dynamic changes in Alzheimer’s disease brain proteome reveals ageing-independent damage in Drosophila

Scholes, H. M.; Cryar, A.; Kerr, F.; Sutherland, D.; Gethings, L. A.; Vissers, J. P. C.; Lees, J. G.; Orengo, C. A.; Partridge, L.; Thalassinos, K.

10.1101/501213 — biochemistry — Posted on 2018-12-22

453 Performance - Based Clustering Enables The Study Of Physiological Features Supporting Sustained Attention Capacities

Marques-Carneiro, J. E.; Staub, B.; Bonnefond, A.

10.1101/497206 — neuroscience — Posted on 2018-12-22

454 SGK regulates pH increase and cyclin B-Cdk1 activation to resume meiosis in starfish ovarian oocytes

Hosoda, E.; Hiraoka, D.; Hirohashi, N.; Omi, S.; Kishimoto, T.; Chiba, K.

10.1101/499699 — molecular biology — Posted on 2018-12-22

455 Dual prognostic role for 2-oxoglutarate oxygenases in ten diverse cancer types: Implications for cell cycle regulation and cell adhesion maintenance

Chang, W. H.; Forde, D.; Lai, A. G.

10.1101/442947 — cancer biology — Posted on 2018-12-22

456 Model Annotation and Discovery with the Physiome Model Repository

Sarwar, D. M.; Kalbasi, R.; Gennari, J. H.; Carlson, B. E.; Neal, M. L.; Bono, B. d.; Atalag, K.; Hunter, P. J.; Nickerson, D. P.

10.1101/498501 — bioinformatics — Posted on 2018-12-22

457 Topological phase transitions in functional brain networks

Santos, F. A. N.; Raposo, E. P.; Coutinho-Filho, M. D.; Copelli, M.; Stam, C. J.; Douw, L.

10.1101/469478 — neuroscience — Posted on 2018-12-22

458 Single Trial Decoding of Scalp EEG Under Naturalistic Stimuli

Tuckute, G.; Hansen, S. T.; Pedersen, N.; Steenstrup, D.; Hansen, L. K.

10.1101/481630 — neuroscience — Posted on 2018-12-22

459 Population-wide copy number variation calling using variant call format files from 6,898 individuals

Png, G.; Suveges, D.; Park, Y.-C.; Walter, K.; Kundu, K.; Ntalla, I.; Tsafantakis, E.; Karaleftheri, M.; Dedoussis, G.; Zeggini, E.; Gilly, A.

10.1101/504209 — bioinformatics — Posted on 2018-12-22

460 Immunological Diversity with Similarity

Arora, R.; Burke, H. M.; Arnaout, R.

10.1101/483131 — immunology — Posted on 2018-12-22

461 Estimating heritability of complex traits in admixed populations with summary statistics

Luo, Y.; Li, X.; Wang, X.; Gazal, S.; Mercader, J. M.; Neale, B.; Florez, J. C.; Auton, A.; Price, A.; Finucane, H. K.; Raychaudhuri, S.

10.1101/503144 — genetics — Posted on 2018-12-22

462 Human sperm chromatin forms spatially restricted nucleosome domains consistent with programmed nucleosome positioning

Huang, W.-H.; Zhang, M.-Z.; Cao, X.-M.; Xu, F.-Q.; Liang, X.-W.; Fu, L.-L.; Sun, F.-Z.; Huang, X.-Y.

10.1101/481028 — developmental biology — Posted on 2018-12-22

463 Netrin/UNC-6 triggers actin assembly and non-muscle myosin activity to drive dendrite retraction in the self-avoidance response.

Sundararajan, L.; Smith, C.; Watson, J.; Millis, B.; Tyska, M.; Miller, D.

10.1101/492769 — developmental biology — Posted on 2018-12-22

464 SGK phosphorylates Cdc25 and Myt1 to trigger cyclin B-Cdk1 activation at the meiotic G2/M transition

Hiraoka, D.; Hosoda, E.; Chiba, K.; Kishimoto, T.

10.1101/499640 — molecular biology — Posted on 2018-12-22

465 Dark aerobic sulfide oxidation by anoxygenic phototrophs in the anoxic waters of Lake Cadagno

Berg, J. S.; Pjevac, P.; Sommer, T.; Buckner, C. R. T.; Philippi, M.; Hach, P.; Liebeke, M.; Holtappels, M.; Danza, F.; Tonolla, M.; Sengupta, A.; Schubert, C.; Milucka, J.; Kuypers, M. M. M.

10.1101/487272 — microbiology — Posted on 2018-12-22

466 Moments reconstruction and local dynamic range compression of high order Superresolution Optical Fluctuation Imaging

Yi, X.; Son, S.; Ando, R.; Miyawaki, A.; Weiss, S.

10.1101/500819 — bioengineering — Posted on 2018-12-22

467 The mechanism of cross-talk between histone H2B ubiquitination and H3 methylation by Dot1L

Worden, E. J.; Hoffmann, N.; Hicks, C.; Wolberger, C.

10.1101/501098 — biochemistry — Posted on 2018-12-22

468 Stimulus domain transfer in recurrent models for large scale cortical population prediction on video

Sinz, F. H.; Ecker, A. S.; Fahey, P. G.; Walker, E. Y.; Cobos, E.; Froudarakis, E.; Yatsenko, D.; Pitkow, X.; Reimer, J.; Tolias, A. S.

10.1101/452672 — neuroscience — Posted on 2018-12-22

469 Empirical analysis and modeling of Argos Doppler location errors in Romania

Rozylowicz, L.; Bodescu, F. P.; Ciocanea, C. M.; Gavrilidis, A. A.; Manolache, S.; Matache, M. L.; Miu, I. V.; Moale, C.; Nita, A.; Popescu, V. D.

10.1101/397364 — ecology — Posted on 2018-12-22

470 Beyond a single patch: local and regional processes explain diversity patterns in a seagrass epifaunal metacommunity

Stark, K. A.; Thompson, P. L.; Yakimishyn, J.; Lee, L.; O'Connor, M. I.

10.1101/482406 — ecology — Posted on 2018-12-22

471 Integrated ligand and structure-based investigation of structural requirements for silent information regulator activation

Gupta, A. K.; Choi, S.

10.1101/481952 — biophysics — Posted on 2018-12-22

472 Spatial neglect is causally linked to an attention-related area in macaque temporal cortex

Bogadhi, A. R.; Bollimunta, A.; Leopold, D. A.; Krauzlis, R. J.

10.1101/410233 — neuroscience — Posted on 2018-12-22

473 Programmed DNA elimination of germline development genes in songbirds

Kinsella, C. M.; Ruiz-Ruano, F. J.; Dion-Cote, A.-M.; Charles, A. J.; Gossmann, T. I.; Cabrero, J.; Kappei, D.; Hemmings, N.; Simons, M. J. P.; Camacho, J. P. M.; Forstmeier, W.; Suh, A.

10.1101/444364 — evolutionary biology — Posted on 2018-12-22

474 Domain organization and conformational change of dynactin p150

Saito, K.; Murayama, T.; Hata, T.; Kobayashi, T.; Shibata, K.; Kazuno, S.; Fujimura, T.; Sakurai, T.; Toyoshima, Y. Y.

10.1101/459040 — biophysics — Posted on 2018-12-22

475 Myeloperoxidase and Eosinophil Peroxidase Inhibit the in vitro Endotoxin Activities of Lipopolysaccharide (LPS) and Lipid A and Increase Survival in an in vivo Mouse LPS LD90 model

Allen, R. C.; Henery, M. L.; Allen, J. C.; Hawks, R. J.; Stephens, J. T.

10.1101/499855 — pharmacology and toxicology — Posted on 2018-12-22

476 Stochastic Variational Inference for Bayesian Phylogenetics: A Case of CAT Model

Dang, T.; Kishino, H.

10.1101/358747 — bioinformatics — Posted on 2018-12-22

477 The economy and environmental attitudes: Does a good economy make citizens care more about the environment?

Rizio, S. M.; Kashima, Y.

10.1101/502682 — scientific communication and education — Posted on 2018-12-22

478 From genotype to antibiotic susceptibility phenotype in Enterobacteriaceae: a clinical perspective

Ruppe, E.; Cherkaoui, A.; Girard, M.; Schicklin, S.; Lazarevic, V.; Schrenzel, J.

10.1101/503607 — microbiology — Posted on 2018-12-22

479 Alopecia areata patients show deficiency of FOXP3+CD39+ T regulatory cells and clonotypic restriction of Treg TCR?-chain, which highlights the immunopathological aspect of the disease

Astrand, A. B. M.; Hamed, F. N.; Bertolini, M.; Rossi, A.; Maleki-Dizaji, A.; Messenger, A. G.; McDonagh, A. J.; Tazi-Ahnini, R.

10.1101/503961 — immunology — Posted on 2018-12-22

480 Makorin1 controls embryonic patterning by alleviating Bruno-mediated repression of oskar translation

Dold, A.; Han, H.; Liu, N.; Hildebrandt, A.; Brüggemann, M.; Rückle, C.; Busch, A.; Beli, P.; Zarnack, K.; König, J.; Roignant, J.-Y.; Lasko, P.

10.1101/501643 — developmental biology — Posted on 2018-12-22

481 FilmArray Respiratory Panel Integrated in a field Point Of Care dispositive for the diagnosis of respiratory tract infections in rural areas in Senegal

Bassene, H.; Edouard, S.; Diatta, G.; Lagier, J. C.; Mediannikov, O.; Fenollar, F.; Diallo, A.; Ba, E. H.; Raoult, D.; Parola, P.; Drancourt, M.; Sokhna, C.

10.1101/502575 — molecular biology — Posted on 2018-12-22

482 The Role of Interleukin-1 cytokine family (IL-1β, IL-37) and interleukin-12 cytokine family (IL-12, IL-35) in eumycetoma infection pathogenesis

Fahal, A. H.; Abushouk, A.; Nasr, A.; Masuadi, E.; Allam, G.; Siddig, E. E.

10.1101/502609 — immunology — Posted on 2018-12-22

483 The psychometric validation of the Dutch version of the Rivermead Post-Concussion Symptoms Questionnaire (RPQ) after Traumatic Brain Injury (TBI)

Plass, A. M.; Van Praag, D.; Covic, A.; Gorbunova, A.; Real, R.; Von Steinbüchel, N.

10.1101/502534 — scientific communication and education — Posted on 2018-12-22

484 Roles matter: Graduate student perceptions of active learning in the STEM courses they take and those they teach

Wischusen, E. W.; Patrick, L.; Howell, L. A.

10.1101/502518 — scientific communication and education — Posted on 2018-12-22

485 Whole-tree heartwood inducing technique for Dalbergia odorifera

Wei, J.; Meng, H.; Chen, D.; Zhao, X.; Zhang, Z.; Liu, Y.; Gao, Z.; Liu, P.; Feng, J.; Yang, Y.; Hui Meng, DeLi Chen, Xiangsheng Zhao, Zheng Zhang, Yangyang Liu, Zhihui Gao, Peiwei Liu, Jian Feng,,

10.1101/503987 — plant biology — Posted on 2018-12-22

486 Single nucleotide variant at the alphaVbeta3 integrin associated to Andes virus infection susceptibility.

Martinez-Valdebenito, C.; Angulo, J.; Le Corre, N.; Marco, C.; Vial, C.; Miquel, J.; Cerda, J.; Mertz, G.; Vial, P.; Lopez-Lastra, M.; Ferres, M.; F. Valdivieso, R. Riquelme,ML Rioseco, M. Calvo, F. Vargas, M. Acuna, R. Mansilla, C. Infante,

10.1101/502591 — microbiology — Posted on 2018-12-22

487 Pyrophosphate modulates stress responses via SUMOylation

Patir-Nebioglu, G.; Andres, Z.; Krebs, M.; Fink, F.; Drzewicka, K.; Stankovic-Valentin, N.; Segami, S.; Schuck, S.; Büttner, M.; Hell, R.; Maeshima, M.; Melchior, F.; Schumacher, K.

10.1101/504373 — biochemistry — Posted on 2018-12-22

488 Maternal psychosocial risk factors and offspring gestational epigenetic age acceleration in a South African birth cohort study

Koen, N.; Jones, M.; Nhapi, R. T.; Donald, K. A.; Barnett, W.; Hoffman, N.; MacIsaac, J. L.; Morin, A. M.; Lin, D. T. S.; Kobor, M. S.; Koenen, K. C.; Zar, H. J.; Stein, D. J.

10.1101/503623 — genomics — Posted on 2018-12-21

489 Extensive recombination suppression and chromosome-wide differentiation of a segregation distorter in Drosophila

Fuller, Z. L.; Koury, S. A.; Leonard, C. J.; Young, R. E.; Ikegami, K.; Westlake, J.; Richards, S.; Schaeffer, S. W.; Phadnis, N.

10.1101/504126 — evolutionary biology — Posted on 2018-12-21

490 qgg: an R package for large-scale quantitativegenetic analyses

Rohde, P. D.; SOrensen, I. F.; SOrensen, P.

10.1101/503631 — genetics — Posted on 2018-12-21

491 doepipeline: a systematic approach for optimizing multi-level and multi-step data processing workflows

Svensson, D.; Sjögren, R.; Sundell, D.; Sjödin, A.; Trygg, J.

10.1101/504050 — bioinformatics — Posted on 2018-12-21

492 βVPE is involved in tapetal degradation and pollen development by activating proprotease maturation in Arabidopsis thaliana

Cheng, Z.; Yin, B.; Zhang, J.; Liu, Y.; Wang, B.; Li, H.; Lu, H.

10.1101/503508 — plant biology — Posted on 2018-12-21

493 Mapping axon conduction delays in vivo from microstructural MRI

Drakesmith, M.; Jones, D. K.

10.1101/503763 — neuroscience — Posted on 2018-12-21

494 Bioorthogonal labeling with tetrazine-dyes forsuper-resolution microscopy

Beliu, G.; Kurz, A.; Kuhlemann, A.; Behringer-Pliess, L.; Wolf, N.; Seibel, J.; Shi, Z.-D.; Schnermann, M.; Grimm, J.; Lavis, L.; Doose, S.; Sauer, M.

10.1101/503821 — biochemistry — Posted on 2018-12-21

495 Individualized non-invasive brain stimulation engages the subgenual anterior cingulate and amygdala

Oathes, D. J.; Zimmerman, J.; Duprat, R.; Cavdaroglu, S.; Scully, M.; Rosenberg, B.; Flounders, M.; Long, H.; Elliott, M.; Shandler, G.; Shinohara, R. T.; Linn, K. A.

10.1101/503441 — neuroscience — Posted on 2018-12-21

496 Cell division history determines hematopoietic stem cell potency

Arai, F.; Stumpf, P. S.; Ikushima, Y. M.; Hosokawa, K.; Roch, A.; Lutolf, M. P.; Suda, T.; MacArthur, B. D.

10.1101/503813 — cell biology — Posted on 2018-12-21

497 Predicting synergism of cancer drug combinations using NCI-ALMANAC data

Sidorov, P.; Naulaerts, S.; Ariey-Bonnet, J.; Pasquier, E.; Ballester, P.

10.1101/504076 — bioinformatics — Posted on 2018-12-21

498 Trace impurities in test stimuli can seriously compromise chemosensory studies

Schorkopf, D. L. P.; Molnar, B. P.; Solum, M.; Larsson, M. C.; Millar, J. G.; Karpati, Z.; Dekker, T.

10.1101/503169 — neuroscience — Posted on 2018-12-21

499 Determinants of cyclization-decyclization kinetics of short DNA with sticky ends

Jeong, J.; Kim, H. D.

10.1101/503490 — biophysics — Posted on 2018-12-21

500 RAISS: Robust and Accurate imputation from Summary Statistics

Julienne, H.; Shi, H.; Pasaniuc, B.; Aschard, H.

10.1101/502880 — bioinformatics — Posted on 2018-12-21

501 VIT1-dependent Fe distribution in seeds is conserved in dicots

Eroglu, S.; Karaca, N.; Vogel-Mikus, K.; Kavcic, A.; Filiz, E.; Tanyolac, B.

10.1101/503342 — plant biology — Posted on 2018-12-21

502 Low Computational-cost Cell Detection Method for Calcium Imaging Data

Ito, T.; Ota, K.; Ueno, K.; Oisi, Y.; Matsubara, C.; Kobayashi, K.; Murayama, M.; Aonishi, T.

10.1101/502153 — neuroscience — Posted on 2018-12-21

503 The whole genome sequence and mRNA transcriptome of the tropical cyclopoid copepod Apocyclops royi

Jorgensen, T. S.; Nielsen, B. L. H.; Petersen, B.; Browne, P. D.; Hansen, B. W.; Hansen, L. H.

10.1101/502997 — genomics — Posted on 2018-12-21

504 Structural basis for the inhibition of translation through eIF2α phosphorylation

Gordiyenko, Y.; Llacer, J. L.; Ramakrishnan, V.

10.1101/503979 — biophysics — Posted on 2018-12-21

505 A revisit of RSEM generative model and its EM algorithm for quantifying transcript abundances.

Vuong, H.; Truong, T.; Tran, T.; Pham, S.

10.1101/503672 — bioinformatics — Posted on 2018-12-21

506 Time-resolved succession of epigenetic regulation during early mammalian development

Chen, H.; Li, H.; Jiang, S.; Huang, X.; Li, W.; Li, R.; Zhang, Z.; Hong, H.; Zhao, C.; Bo, X.

10.1101/503805 — bioinformatics — Posted on 2018-12-21

507 Performance evaluation of biosurfactant stabilized microbubbles in enhanced oil recovery

Dhanarajana, G.; Perveen, S.; Roy, A.; De, S.; Sen, R.

10.1101/504431 — bioengineering — Posted on 2018-12-21

508 Navigating the structural landscape of de novo α-helical bundles

Rhys, G. G.; Wood, C. W.; Beesley, J. L.; Zaccai, N. R.; Burton, A. J.; Brady, R. L.; Thomson, A. R.; Woolfson, D. N.

10.1101/503698 — biochemistry — Posted on 2018-12-21

509 A novel structure-based control method for analyzing nonlinear dynamics in biological networks

Guo, W.-F.; Zhang, S.-W.; Zeng, T.; Li, Y.; Gao, J.; Chen, L.

10.1101/503565 — systems biology — Posted on 2018-12-21

510 Thermosensitive alternative splicing senses and mediates temperature adaptation in Drosophila

Evantal, N.; Anduaga, A. M.; Bartok, O.; Patop, I. L.; Weiss, R.; Kadener, S.

10.1101/503409 — neuroscience — Posted on 2018-12-21

511 Regenerative Failure Following Rat Neonatal Chorda Tympani Transection is Associated with Geniculate Ganglion Cell Loss and Terminal Field Plasticity in the Nucleus of the Solitary Tract

Martin, L. J.; Lane, A. H.; Samson, K. K.; Sollars, S. I.

10.1101/503326 — neuroscience — Posted on 2018-12-21

512 Diagnostic high-throughput sequencing of 2,390 patients with bleeding, thrombotic and platelet disorders

Downes, K.; Megy, K.; Duarte, D.; Vries, M.; Gebhart, J.; Hofer, S.; Shamardina, O.; Deevil, S. V.; Stephens, J.; Mapeta, R.; Tuna, S.; Al Hasso, N.; Besser, M. W.; Cooper, N.; Daugherty, L.; Gleadall, N.; Greene, D.; Haimel, M.; Martin, H.; Papadia, S.; Revel-Vilk, S.; Sivapalaratnam, S.; Symington, E.; Thomas, W.; Thys, C.; Tolios, A.; Penkett, C. J.; NIHR BioResource, ; Ouwehand, W. H.; Abbs, S.; Laffan, M. A.; Turro, E.; Simeoni, I.; Mumford, A. D.; Henskens, Y. M.; Pabinger, I.; Gomez, K.; Freson, K.

10.1101/504142 — genetics — Posted on 2018-12-21

513 A Rap1 binding site and lipid-dependent helix in talin F1 domain cooperate in integrin activation

Gingras, A.; Lagarrigue, F.; Cuevas, M.; Zorovich, M.; Valadez, A.; Lopez-Ramirez, M. A.; Seban, N.; McLaughlin, W.; Ginsberg, M.

10.1101/504894 — cell biology — Posted on 2018-12-21

514 Hyocholic acid species and the risk of type 2 diabetes

Zheng, X.; Chen, T.; Jiang, R.; Zhao, A.; Huang, F.; Zhang, Y.; Han, X.; Li, M.; Wei, M.; You, Y.; Wang, S.; Ma, X.; Bao, Y.; Jiang, M.; Liu, J.; Zhao, Q.; Ge, K.; Dong, B.; Li, D.; Liang, D.; Lei, S.; Li, Y.; Lan, K.; Lu, A.; Zhang, W.; Wang, C.; Yu, H.; Rajani, C.; Panee, J.; Xie, G.; Jia, W.; Jia, W.

10.1101/503532 — systems biology — Posted on 2018-12-21

515 Molecular Process Diagram: a precise, scalable and compact visualization of rule-based models

Vasilescu, D.; Greene, J.; Schaff, J. C.; Moraru, I. I.; Blinov, M. L.

10.1101/503359 — systems biology — Posted on 2018-12-21

516 Microglial activation in an amyotrophic lateral sclerosis-like model caused by Ranbp2 lossand nucleocytoplasmic transport impairment in retinal ganglion neurons

Cho, K.-i.; Yoon, D.; Yu, M.; Peachey, N. S.; Ferreira, P. A.

10.1101/504225 — neuroscience — Posted on 2018-12-21

517 Measuring Granger-causal effects in multivariate time series by system editing

Pascual-Marqui, R. D.; Biscay, R. J.; Bosch-Bayard, J.; Faber, P.; Kinoshita, T.; Kochi, K.; Milz, P.; Nishida, K.; Yoshimura, M.

10.1101/504068 — neuroscience — Posted on 2018-12-21

518 Embedding the Skin Conductance Response into the Brain Connectivity Framework: Monoaminergic Signaling Visible Through the Lenses of Computational Modeling

Brankovic, S.

10.1101/504183 — neuroscience — Posted on 2018-12-21

519 Continent-scale phenotype mapping using photographs from citizen scientists

Drury, J. P.; Barnes, M.; Finneran, A. E.; Harris, M.; Grether, G. F.

10.1101/503847 — evolutionary biology — Posted on 2018-12-21

520 Accounting for measurement error to assess the effect of air pollution on omic signals

Ponzi, E.; Vineis, P.; Chung, K. F.; Blangiardo, M.

10.1101/504001 — epidemiology — Posted on 2018-12-21

521 Genetic approaches in mice demonstrate that neuro-mesodermal progenitors express T/Brachyury but not Sox2

Mugele, D.; Moulding, D.; Savery, D.; Mole, M.; Greene, N.; Martinez-Barbera, J. P.; Copp, A.

10.1101/503854 — developmental biology — Posted on 2018-12-21

522 Dynamics of centriole amplification in centrosome-depleted brain multiciliated progenitors

MERCEY, O.; Al Jord, A.; Rostaing, P.; Mahuzier, A.; Fortoul, A.; Boudjema, A.-R.; Faucourt, M.; Spassky, N.; Meunier, A.

10.1101/503730 — cell biology — Posted on 2018-12-21

523 Mitochondrial cristae biogenesis coordinates with ETC complex IV assembly during Drosophila maturation

Jiang, Y.-f.; Lin, H.-l.; Wang, L.-j.; Hsu, T.; Fu, C.

10.1101/503474 — cell biology — Posted on 2018-12-21

524 Are Zinc oxide nanoparticles safe? A structural study on human serum albumin using in vitro and in silico methods

Hassanian, M.; Aryapour, H.; Goudarzi, A.; Bezi Javan, M.

10.1101/503797 — biochemistry — Posted on 2018-12-21

525 The Bayesian Superorganism III: externalised memories facilitate distributed sampling

Hunt, E. R.; Franks, N. R.; Baddeley, R. J.

10.1101/504241 — animal behavior and cognition — Posted on 2018-12-21

526 Challenging the function of motor inhibition: Does it really assist action selection?

Quoilin, C.; Fievez, F.; Duque, J.

10.1101/504159 — neuroscience — Posted on 2018-12-21

527 A biophysical computational model for memory trace transfer from hippocampus to neocortex

Liu, X.; Kuzum, D.

10.1101/503524 — neuroscience — Posted on 2018-12-21

528 Impaired reliability and precision of spiking in adults but not juveniles in a mouse model of Fragile X Syndrome

Dwivedi, D.; Chattarji, S.; Bhalla, U.

10.1101/503714 — neuroscience — Posted on 2018-12-21

529 The neural dynamics of hierarchical Bayesian inference in multisensory perception

Rohe, T.; Ehlis, A.-C.; Noppeney, U.

10.1101/504845 — neuroscience — Posted on 2018-12-21

530 Dual-color volumetric imaging of neural activity of cortical columns

Han, S.; Yang, W.; Yuste, R.

10.1101/504233 — neuroscience — Posted on 2018-12-21

531 Use of IFNγ/IL10 ratio for stratification of hydrocortisone therapy in patients with septic shock

Koenig, R.; Kolte, A.; Ahlers, O.; Oswald, M.; Roell, D.; Dimopoulos, G.; Tsangaris, I.; Antoniadou, E.; Bogatsch, H.; Loeffler, M.; Sprung, C. L.; Singer, M.; Brunkhorst, F.; Oppert, M.; Gerlach, H.; Claus, R. A.; Coldewey, S. M.; Briegel, J.; Giamarellos-Bourboulis, E. J.; Keh, D.; Bauer, M.

10.1101/502864 — immunology — Posted on 2018-12-21

532 Strong selective sweeps before 45,000BP displaced archaic admixture across the human X chromosome

Skov, L.; Macia, M. C.; Lucotte, E.; Cavassim, M. I. A.; Castellano, D.; Mailund, T.; Schierup, M. H.; Munch, K.

10.1101/503995 — genomics — Posted on 2018-12-21

533 Direct capture of CRISPR guides enables scalable, multiplexed, and multi-omic Perturb-seq

Replogle, J. M.; Xu, A.; Norman, T. M.; Meer, E. J.; Terry, J. M.; Riordan, D.; Srinivas, N.; Mikkelsen, T. S.; Weissman, J. S.; Adamson, B.

10.1101/503367 — genomics — Posted on 2018-12-21

534 The genetic basis of hindwing eyespot number variation in Bicyclus anynana butterflies

Rivera-Colon, A. G.; Westerman, E.; van Belleghem, S.; Monteiro, A.; Papa, R.

10.1101/504506 — genetics — Posted on 2018-12-21

535 Opsin gene evolution in amphibious and terrestrial combtooth blennies (Blenniidae)

Cortesi, F.; Cheney, K. M.; Cooke, G. M.; Ord, T.

10.1101/503516 — evolutionary biology — Posted on 2018-12-21

536 1,4-dihydroxy Quininib Attenuates Growth of Colorectal Cancer Cells and Xenografts and Regulates the TIE-2 Signaling Pathway in Patient Tumours

Butler, C. T.; Kennedy, S.; Buckley, A.; Doyle, R.; Conroy, E.; Gallagher, W. M.; O'Sullivan, J.; Kennedy, B. N.

10.1101/503888 — cancer biology — Posted on 2018-12-21

537 A unifying photocycle model for light adaptation and temporal evolution of cation conductance in Channelrhodopsin-2

Kuhne, J.; Vierock, J.; Tennigkeit, S. A.; Dreier, M.-A.; Wietek, J.; Petersen, D.; Gavriljuk, K.; El-Mashtoly, S. F.; Hegemann, P.; Gerwert, K.

10.1101/503706 — biophysics — Posted on 2018-12-21

538 Genome-wide non-coding variant interpretation improves discovery of transcriptional regulators of drug response

Xie, X.; Hanson, C.; Sinha, S.

10.1101/503458 — bioinformatics — Posted on 2018-12-21

539 Phosphorylation regulates auto-inhibition of kinesin KIF3A

Chen, K.; Saw, W.-G.; Lama, D.; Verma, C.; Gruber, G.; Koh, C.-G.

10.1101/503680 — biochemistry — Posted on 2018-12-21

540 Predicting complex genetic phenotypes using error propagation in weighted networks

El-Mhamdi, E.-M.; Kucharavy, A.; Guerraoui, R.; Li, R.

10.1101/487348 — systems biology — Posted on 2018-12-21

541 Reduced central and peripheral inflammatory responses and increased mitochondrial activity contribute to diet-induced obesity resistance in WSB/EiJ mice.

Terrien, J.; Seugnet, I.; Seffou, B.; Herrero, M. J.; Bowers, J.; Chamas, L.; Decherf, S.; Duvernois-Berthet, E.; Djediat, C.; Ducos, B.; Demeneix, B. A.; Clerget-Froidevaux, M.-S.

10.1101/504308 — physiology — Posted on 2018-12-21

542 Detection of acute TLR-7 agonist-induced hemorrhagic myocarditis in mice by refined multi-parametric quantitative cardiac MRI.

Baxan, N.; Papanikolaou, A.; Salles-Crawley, I.; Lota, A.; Chowdhury, R.; Dubois, O.; Branca, J.; Hasham, M.; Rosenthal, N.; Prasad, S.; Zhao, L.; Harding, S. E.; Sattler, S.

10.1101/502237 — physiology — Posted on 2018-12-21

543 Genotypic variation in root distribution changes and physiological responses of sugarcane induced by drought stress

Namwongsa, J.; Jongrungklang, N.; Songsri, P.

10.1101/503912 — physiology — Posted on 2018-12-21

544 PSI controls tim splicing and circadian period in Drosophila

Foley, L.; Ling, J.; Joshii, R.; Evantal, N.; Kadener, S.; Emery, P.

10.1101/504282 — neuroscience — Posted on 2018-12-21

545 Structural Basis for eIF2B Inhibition in Integrated Stress Response

Kashiwagi, K.; Yokoyama, T.; Nishimoto, M.; Takahashi, M.; Sakamoto, A.; Yonemochi, M.; Shirouzu, M.; Ito, T.

10.1101/503540 — molecular biology — Posted on 2018-12-21

546 A Novel Uranium Bioremediation Approach using Radioresistance Deinocoocus radiodurans Biofilm

Manobala, T.; Shukla, S.; Rao, T. S.; Kumar, M. D.

10.1101/503896 — microbiology — Posted on 2018-12-21

547 Whole Genome Sequencing of Primary Immunodeficiency reveals a role for common and rare variants in coding and non-coding sequences

Thaventhiran, J. E. D.; Lango Allen, H.; Burren, O. S.; Farmery, J. H. R.; Staples, E.; Zhang, Z.; Rae, W.; Greene, D.; Simeoni, I.; Maimaris, J.; Penkett, C.; Stephens, J.; Deevi, S. V. V.; Sanchis-Juan, A.; Gleadall, N. S.; Thomas, M. J.; Sargur, R. B.; Gordins, P.; Baxendale, H. E.; Brown, M.; Tuijnenburg, P.; Worth, A.; Hanson, S.; Linger, R.; Buckland, M. S.; Rayner-Matthews, P. J.; Gilmour, K. C.; Samarghitean, C.; Seneviratne, S. L.; Lyons, P. A.; Sansom, D. M.; Lynch, A. G.; Megy, K.; Ellinghaus, E.; Ellinghaus, D.; Jorgensen, S. F.; Karlsen, T. H.; Stirrups, K. E.; Cutler, A. J.; Kuma

10.1101/499988 — immunology — Posted on 2018-12-21

548 Transcriptional output, cell types densities and normalization in spatial transcriptomics

Saiselet, M.; Rodrigues-Vitoria, J.; Craciun, L.; Spinette, A.; Larsimont, D.; Andry, G.; Lundeberg, J.; Maenhaut, C.; Detours, V.

10.1101/503870 — genomics — Posted on 2018-12-21

549 Multiple signaling pathways converge onto the regulation of HAD-like phosphatases to modulate cellular resistance to the metabolic inhibitor 2-deoxyglucose

Defenouillere, Q.; Verraes, A.; Laussel, C.; Friedrich, A.; Schacherer, J.; Leon, S.

10.1101/504134 — genetics — Posted on 2018-12-21

550 Differential dominance of an allele of the Drosophila tbetah gene defies standard genetic techniques

Damrau, C.; Eriksson, A.; Colomb, J.; Brembs, B.

10.1101/504332 — genetics — Posted on 2018-12-21

551 Low but genetically variable male mating ability in a tropical Drosophila despite fitness benefits of remating

Saxon, A. D.; Jones, N. E.; O'Brien, E. K.; Bridle, J. R.

10.1101/504035 — evolutionary biology — Posted on 2018-12-21

552 Evolutionary implications of the first microRNA- and piRNA complement of Lepidodermella squamata (Gastrotricha)

Fromm, B.; Tosar, J. P.; Aguilera, F.; Friedlander, M. R.; Bachmann, L.; Hejnol, A.

10.1101/504100 — evolutionary biology — Posted on 2018-12-21

553 Evidence that population increase and range expansion by Eurasian Sparrowhawks has impacted avian prey populations

Bell, C. P.

10.1101/491522 — ecology — Posted on 2018-12-21

554 Mangrove forest structure and composition along urban gradients in Puerto Rico

Branoff, B.; Martinuzzi, S.

10.1101/504928 — ecology — Posted on 2018-12-21

555 Analysis of Maize Profilin-4 Isoform as an allergen

Hossain, M. F.; Alam, S.; Hasan, M. K.

10.1101/503425 — bioinformatics — Posted on 2018-12-21

556 To integrate or not to integrate: Temporal dynamics of Bayesian Causal Inference

Aller, M.; Noppeney, U.

10.1101/504118 — neuroscience — Posted on 2018-12-21

557 Amyloid Precursor Protein (APP) controls excitatory/inhibitory synaptic inputs by regulating the transcriptional activator Neuronal PAS Domain Protein 4 (NPAS4)

Opsomer, R.; Contino, S.; Perrin, F.; Tasiaux, B.; Doyen, P.; Vergouts, M.; Vrancx, C.; Doshina, A.; Pierrot, N.; Octave, J.-N.; Stanga, S.; Kienlen-Campard, P.

10.1101/504340 — neuroscience — Posted on 2018-12-21

558 Encoding of wind direction by central neurons in Drosophila

Suver, M. P.; Matheson, A. M. M.; Sarkar, S.; Damiata, M.; Schoppik, D.; Nagel, K. I.

10.1101/504753 — neuroscience — Posted on 2018-12-21

559 The bat influenza H17N10 can be neutralized by broadly-neutralizing monoclonal antibodies and its neuraminidase can facilitate viral egress.

Carnell, G.; Giotis, E.; Grehan, K.; Ferrara, F.; Mather, S.; Molesti, E.; Scott, S.; Schwemmle, M.; Pessi, A.; Lacek, K.; Temperton, N.

10.1101/499947 — microbiology — Posted on 2018-12-21

560 MutaSeq reveals the transcriptomic consequences of clonal evolution in acute myeloid leukemia

Velten, L.; Story, B. A.; Hernandez-Malmierca, P.; Milbank, J.; Paulsen, M.; Lutz, C.; Nowak, D.; Jann, J.-C.; Pabst, C.; Boch, T.; Hofmann, W.-K.; Mueller-Tidow, C.; Raffel, S.; Trumpp, A.; Haas, S.; Steinmetz, L. M.

10.1101/500108 — genomics — Posted on 2018-12-21

561 The Epistasis Boundary: Linear vs. Nonlinear Genotype-Phenotype Relationships

Sverdlov, S.; Thompson, E. A.

10.1101/503466 — genomics — Posted on 2018-12-21

562 Deep evolutionary origin of limb and fin regeneration

Darnet, S.; Cutrim Dragalzew, A.; Baia Amaral, D.; Thompson, A. W.; Cass, A. N.; Lorena, J.; Sousa, J. F.; Costa, C. M.; Sousa, M. P.; Froebisch, N. B.; Schneider, P. N.; Davis, M. C.; Braasch, I.; Schneider, I.

10.1101/503011 — evolutionary biology — Posted on 2018-12-21

563 Aspects of invasiveness of Ludwigia and Nelumbo in shallow temperate fluvial lakes

Toth, V. R.; Villa, P.; Pinardi, M.; Bresciani, M.

10.1101/504084 — ecology — Posted on 2018-12-21

564 The Effect of Compound Kushen Injection on Cancer Cells: Integrated Identification of Candidate Molecular Mechanisms.

Cui, J.; Qu, Z.; Harata-Lee, Y.; Shen, H.; Aung, T. N.; Wang, W.; Kortschak, R. D.; Adelson, D. L.

10.1101/503318 — pharmacology and toxicology — Posted on 2018-12-21

565 Sensorimotor conflicts alter perceptual and action monitoring

Faivre, N.; Vuillaume, L.; Bernasconi, F.; Salomon, R.; Blanke, O.; Cleeremans, A.

10.1101/504274 — neuroscience — Posted on 2018-12-21

566 Economic status mediates the relationship between educational attainment and posttraumatic stress disorder: a multivariable Mendelian randomization study

Polimanti, R.; Ratanatharathorn, A.; Maihofer, A. X.; Choi, K. W.; Stein, M. B.; Morey, R. A.; Logue, M. W.; Nievergelt, C.; Stein, D. J.; Koenen, K. C.; Gelernter, J.; the Psychiatric Genomics Consortium Posttraumatic Stress Disorder Workgroup,

10.1101/503300 — genetics — Posted on 2018-12-21

567 Cancer-Induced Immunosuppression can enable Effectiveness of Immunotherapy through Bistability Generation: a mathematical and computational Examination

Garcia, V.; Bonhoeffer, S.; Fu, F.

10.1101/498741 — cancer biology — Posted on 2018-12-21

568 Population-wide copy number variation calling using variant call format files from 6,898 individuals

Png, G.; Suveges, D.; Park, Y.-C.; Walter, K.; Kundu, K.; Ntalla, I.; Tsafantakis, E.; Karaleftheri, M.; Dedoussis, G.; Zeggini, E.; Gilly, A.

10.1101/504209 — bioinformatics — Posted on 2018-12-21

569 ElectroPen: An ultralow-cost piezoelectric electroporator

Byagathvalli, G.; Sinha, S.; Zhang, Y.; Styczynski, M.; Standeven, J.; Bhamla, M. S.

10.1101/448977 — bioengineering — Posted on 2018-12-21

570 Convergent Allostery in Ribonucleotide Reductase

Thomas, W. C.; Brooks, F. P.; Burnim, A. A.; Bacik, J.-P.; Stubbe, J.; Kaelber, J. T.; Chen, J. Z.; Ando, N.

10.1101/504290 — biochemistry — Posted on 2018-12-21

571 Design of a Synthetic sRNA-based Feedback Filter Module

Delalez, N.; Sootla, A.; Wadhams, G. H.; Papachristodoulou, A.

10.1101/504449 — synthetic biology — Posted on 2018-12-21

572 Distinct contributions of mouse cortical areas to visual discrimination

Zatka-Haas, P.; Steinmetz, N. A.; Carandini, M.; Harris, K. D.

10.1101/501627 — neuroscience — Posted on 2018-12-21

573 Visual delay affects force scaling and weight perception when lifting objects in virtual reality

van Polanen, V.; Tibold, R.; Davare, M.

10.1101/504563 — neuroscience — Posted on 2018-12-21

574 A role for gut microbiota in m6A epitranscriptomic mRNA modifications in different host tissues

Jabs, S.; Becavin, C.; Nahori, M.-A.; Guerinau, V.; Touboul, D.; Ghozlane, A.; Dillies, M.-A.; Cossart, P.

10.1101/504266 — molecular biology — Posted on 2018-12-21

575 A circuit of protein-protein regulatory interactions enables polarity establishment in a bacterium

Zhao, W.; Duvall, S. W.; Kowallis, K. A.; Tomares, D. T.; Petitjean, H. N.; Childers, W. S.

10.1101/503250 — microbiology — Posted on 2018-12-21

576 chroGPS2: differential analysis of epigenome maps in R.

Reina, O.; Azorin, F.; Stephan-Otto Attolini, C.

10.1101/425892 — bioinformatics — Posted on 2018-12-21

577 Coordination of trait responses to above and belowground resource limitation in cultivated sunflower (Helianthus annuus L.)

Wang, Y.; Temme, A.; Donovan, L.

10.1101/504316 — plant biology — Posted on 2018-12-21

578 An event-based paradigm for analyzing fluorescent astrocyte activity uncovers novel single-cell and population-level physiology

Wang, Y.; DelRosso, N. V.; Vaidyanathan, T.; Reitman, M.; Cahill, M. K.; Mi, X.; Yu, G.; Poskanzer, K. E.

10.1101/504217 — neuroscience — Posted on 2018-12-21

579 Structural and Biochemical Studies of Dihydrofolate Reductase from Streptococcus pyogenes as a Target for Antifolate Antibiotics

Hajian, B.; Krucinska, J.; Martins, M.; G-Dayanan, N.; Viswanathan, K.; Tavakoli, S.; Wright, D.

10.1101/504357 — microbiology — Posted on 2018-12-21

580 A family-based phasing algorithm for sequence data

Battagin, M.; Gonen, S.; Ros-Freixedes, R.; Whalen, A.; Gorjanc, G.; Hickey, J. M.

10.1101/504480 — genomics — Posted on 2018-12-21

581 VIKNGS: A C++ VARIANT INTEGRATION KIT FOR NEXTGENERATION SEQUENCING ASSOCIATION ANALYSIS

Baskurt, Z.; Mastromatteo, S.; Gong, J.; Wintle, R. F.; Scherer, S. W.; Strug, L. J.

10.1101/504381 — genetics — Posted on 2018-12-21

582 The Caenorhabditis elegans HAM-1 protein modifies G protein signaling and membrane extension to reverse the polarity of asymmetric cell division

Teuliere, J.; Garriga, G.

10.1101/504787 — developmental biology — Posted on 2018-12-21

583 Megakaryocyte emperipolesis mediates membrane transfer from intracytoplasmic neutrophils to platelets

Cunin, P.; Bouslama, R.; Machlus, K. R.; Martinez-Bonet, M.; Lee, P. Y.; Nelson-Maney, N.; Morris, A.; Guo, L.; Weyrich, A. S.; Sola-Visner, M.; Boilard, E.; Italiano, J. E.; Nigrovic, P. A.

10.1101/504555 — cell biology — Posted on 2018-12-21

584 Controlling Organization and Forces in Active Matter Through Optically-Defined Boundaries

Ross, T.; Lee, H. J.; Qu, Z.; Banks, R. A.; Phillips, R.; Thomson, M.

10.1101/504456 — biophysics — Posted on 2018-12-21

585 Geometric constraints in protein folding

Molkenthin, N.; Muehle, S.; Mey, A.; Timme, M.

10.1101/504399 — biophysics — Posted on 2018-12-21

586 Extended field-of-view ultrathin microendoscopes with built-in aberration correction for high-resolution imaging with minimal invasiveness

Antonini, A.; Bovetti, S.; Moretti, C.; Succol, F.; Rajamanickam, V. P.; Bertoncini, A.; Liberale, C.; Fellin, T.

10.1101/504472 — neuroscience — Posted on 2018-12-21

587 A Framework for Intelligence and Cortical Function Based on Grid Cells in the Neocortex

Hawkins, J.; Lewis, M.; Klukas, M.; Purdy, S.; Ahmad, S.

10.1101/442418 — neuroscience — Posted on 2018-12-21

588 Lifespan driven reorganization of the global network dynamics unfold on a multifrequency landscape

Sahoo, B.; Pathak, A.; Deco, G.; Banerjee, A.; Roy, D.

10.1101/504589 — neuroscience — Posted on 2018-12-21

589 Elongated cells drive morphogenesis in a surface-wrapped finite element model of germband retraction

McCleery, W. T.; Veldhuis, J. H.; Brodland, G. W.; Bennett, M. E.; Hutson, M. S.

10.1101/504548 — biophysics — Posted on 2018-12-21

590 Metagenomic unmapped reads provide important insights into human microbiota and disease associations

Zhu, Z.; Ren, J.; Michail, S.; Sun, F.

10.1101/504829 — bioinformatics — Posted on 2018-12-21

591 From skylight input to behavioural output: a computational model of the insect polarised light compass

Gkanias, E.; Risse, B.; Mangan, M.; Webb, B.

10.1101/504597 — animal behavior and cognition — Posted on 2018-12-21

592 A data-driven approach to reduce gender disparity in invited speaker programs at scientific meetings

Vallence, A.-M.; Hinder, M. R.; Fujiyama, H.

10.1101/426320 — scientific communication and education — Posted on 2018-12-21

593 The Genomic Geography and Evolution of Clusters of Tandemly Duplicated Genes in the Human and Mammal Genomes

Ortiz, J. F.; Rokas, A.

10.1101/504498 — evolutionary biology — Posted on 2018-12-21

594 Phase Transitions in Mutualistic Communities under Invasion

Bray, S. R.; Fan, Y.; Wang, B.

10.1101/504605 — ecology — Posted on 2018-12-21

595 Sparse functional data analysis accounts for missing information in single-cell epigenomics

Madrigal, P.; Dai, X.; Hadjipantelis, P. Z.

10.1101/504365 — bioinformatics — Posted on 2018-12-21

596 Comammox Nitrospira are the dominant ammonia oxidizers in a mainstream low dissolved oxygen nitrification reactor

Roots, P.; Wang, Y.; Rosenthal, A.; Griffin, J.; Sabba, F.; Petrovich, M.; Yang, F.; Kozak, J.; Zhang, H.; Wells, G.

10.1101/504704 — bioengineering — Posted on 2018-12-21

597 Complement C3- and CR3-dependent microglial clearance protects photoreceptors in retinitis pigmentosa

Silverman, S. M.; Ma, W.; Wang, X.; Zhao, L.; Wong, W. T.

10.1101/504647 — neuroscience — Posted on 2018-12-21

598 Perineuronal Nets in the Insula Regulate Aversion-Resistant Alcohol Drinking

Chen, H.; Lasek, A. W.

10.1101/504571 — neuroscience — Posted on 2018-12-21

599 Comparison of Two-Talker Attention Decoding from EEG with Nonlinear Neural Networks and Linear Methods

Ciccarelli, G.; Nolan, M.; Perricone, J.; Calamia, P.; Haro, S.; O'Sullivan, J.; Mesgarani, N.; Quatieri, T.; Smalt, C.

10.1101/504522 — neuroscience — Posted on 2018-12-21

600 Network topology of neural systems supporting avalanche dynamics predicts stimulus propagation and recovery

Ju, H.; Kim, J. Z.; Bassett, D. S.

10.1101/504761 — neuroscience — Posted on 2018-12-21

601 Salivary proteins of a gall-inducing aphid and their impact on early gene responses of susceptible and resistant host-plant genotypes

Portillo Lemus, L.; Tricard, J.; Duclercq, J.; Coulette, Q.; Giron, D.; Hano, C.; Huguet, E.; Lamblin, F.; Cherqui, A.; Salle, A.

10.1101/504613 — ecology — Posted on 2018-12-21

602 R/qtl2: software for mapping quantitative trait loci with high dimensional data and multi-parent populations

Broman, K. W.; Gatti, D. M.; Simecek, P.; Furlotte, N. A.; Prins, P.; Sen, S.; Yandell, B. S.; Churchill, G. A.

10.1101/414748 — genetics — Posted on 2018-12-21

603 Determinants of accelerated metabolomic and epigenetic ageing in a UK cohort

Robinson, O. J.; Chadeau Hyam, M.; Karaman, I.; Climaco Pinto, R.; Fiorito, G.; Gao, H.; Heard, A.; Jarvelin, M.-R.; Lewis, M.; Pazoki, R.; Polidoro, S.; Tzoulaki, I.; Wielscher, M.; Elliott, P.; Vineis, P.

10.1101/411603 — epidemiology — Posted on 2018-12-21

604 Comparative Performance of the Finite Element Method and the Boundary Element Fast Multipole Method for Problems Mimicking Transcranial Magnetic Stimulation (TMS)

Htet, A. T.; Saturnino, G. B.; Burnham, E. H.; Noetscher, G. M.; Nummenmaa, A.; Makarov, S. N.

10.1101/411082 — bioengineering — Posted on 2018-12-21

605 Ventral tegmental area astrocytes orchestrate avoidance and approach behavior

Gomez, J. A.; Perkins, J. M.; Beaudoin, G. M.; Cook, N. B.; Quraishi, S. A.; Szoeke, E. A.; Thangamani, K.; Tschumi, C. W.; Wanat, M. J.; Maroof, A. M.; Beckstead, M. J.; Rosenberg, P. A.; Paladini, C. A.

10.1101/401919 — neuroscience — Posted on 2018-12-21

606 Unfold: An integrated toolbox for overlap correction, non-linear modeling, and regression-based EEG analysis

Ehinger, B. V.; Dimigen, O.

10.1101/360156 — neuroscience — Posted on 2018-12-21

607 Deep attention networks reveal the rules of collective motion in zebrafish

Heras, F. J. H.; Romero-Ferrero, F.; Hinz, R. C.; de Polavieja, G. G.

10.1101/400747 — animal behavior and cognition — Posted on 2018-12-21

608 Designing Minimal Genomes Using Whole-Cell Models

Rees, J.; Chalkley, O.; Landon, S.; Purcell, O.; Marucci, L.; Grierson, C.

10.1101/344564 — synthetic biology — Posted on 2018-12-21

609 Functional and Anatomical Specificity in a Higher Olfactory Centre

Frechter, S.; Bates, A. S.; Tootoonian, S.; Dolan, M.-J.; Manton, J. D.; Jamasb, A.; Kohl, J.; Bock, D.; Jefferis, G. S. X. E.

10.1101/336982 — neuroscience — Posted on 2018-12-21

610 Chloroplast competition is controlled by lipid biosynthesis in evening primroses

Sobanski, J.; Giavalisco, P.; Fischer, A.; Kreiner, J.; Walther, D.; Schoettler, M. A.; Pellizzer, T.; Golczyk, H.; Obata, T.; Bock, R.; Sears, B. B.; Greiner, S.

10.1101/330100 — genetics — Posted on 2018-12-21

611 The high turnover of ribosome-associated transcripts from de novo ORFs produces gene-like characteristics available for de novo gene emergence in wild yeast populations

Durand, E.; Gagnon-Arsenault, I.; Hallin, J.; Hatin, I.; Dube, A. K.; Nielly-Thibault, L.; Namy, O.; Landry, C. R.

10.1101/329730 — evolutionary biology — Posted on 2018-12-21

612 Leaps and bounds: geographical and ecological distance constrained the colonisation of the Afrotemperate by Erica

Pirie, M. D.; Kandziora, M.; Nuerk, N. M.; Le Maitre, N. C.; Mugrabi de Kuppler, A. L.; Gehrke, B.; Oliver, E. G. H.; Bellstedt, D. U.

10.1101/290791 — evolutionary biology — Posted on 2018-12-21

613 Why do eukaryotic proteins contain more intrinsically disordered regions?

Basile, W.; Salvatore, M.; Bassot, C.; Elofsson, A.

10.1101/270694 — bioinformatics — Posted on 2018-12-21

614 Dissociable effects of prediction and integration during language comprehension: Evidence from a large-scale study using brain potentials

Nieuwland, M. S.; Barr, D. J.; Bartolozzi, F.; Busch-Moreno, S.; Darley, E.; Donaldson, D. I.; Ferguson, H. J.; Fu, X.; Heyselaar, E.; Huettig, F.; Husband, E. M.; Ito, A.; Kazanina, N.; Kogan, V.; Kohut, Z.; Kulakova, E.; Meziere, D.; Politzer-Ahles, S.; Rousselet, G.; Rueschemeyer, S.-A.; Segaert, K.; Tuomainen, J.; Von Grebmer Zu Wolfsthurn, S.

10.1101/267815 — neuroscience — Posted on 2018-12-21

615 A novel combination of chemotherapy and immunotherapy controls tumor growth in mice with a human immune system

Burlion, A.; Ramos, R.; Sendeyo, K.; KC, P.; Corneau, A.; Caux, C.; Piaggio, E.; Olive, D.; Caux, C.; Marodon, G.

10.1101/191031 — immunology — Posted on 2018-12-21

616 The number of active metabolic pathways is bounded by the number of cellular constraints at maximal metabolic rates

de Groot, D. H.; van Boxtel, C.; Planque, R.; Bruggeman, F. J.; Teusink, B.

10.1101/167171 — systems biology — Posted on 2018-12-21

617 Structures of the Human Spliceosomes Before and After Release of the Ligated Exon

Zhang, X.; Zhan, X.; Yan, C.; Zhang, W.; Liu, D.; Lei, J.; Shi, Y.

10.1101/496695 — biochemistry — Posted on 2018-12-21

618 Hyperinsulinemia promotes aberrant histone acetylation in triple negative breast cancer

Senapati, P.; Thai, C.; Sanchez, A.; Gallagher, E. J.; LeRoith, D.; Seewaldt, V. L.; Ann, D. K.; Schones, D. E.

10.1101/503201 — molecular biology — Posted on 2018-12-21

619 An advanced strategy for comprehensive profiling of ADP-ribosylation sites using mass spectrometry-based proteomics

Hendriks, I. A.; Larsen, S. C.; Nielsen, M. L.

10.1101/501353 — molecular biology — Posted on 2018-12-21

620 Pre-Clinical Blocking of PD-L1 molecule, which expression is down regulated by NF-κB, JAK1/JAK2 and BTK inhibitors, induces regression of activated B-cell lymphoma.

Vincent-Fabert, C.; Roland, L.; Zimber-Strobl, U.; Feuillard, J.; Faumont, N.

10.1101/502922 — cancer biology — Posted on 2018-12-21

621 The human HELLS chromatin remodelling protein promotes end resection to facilitate homologous recombination within heterochromatin

Chambers, A. L.; Kollarovic, G.; Topping, C. E.

10.1101/504043 — biochemistry — Posted on 2018-12-21

622 Modulation of ERK1/MAPK3 potentiates ERK nuclear signalling, facilitates neuronal cell survival and improves memory in mouse models of neurodegenerative disorders

Indrigo, M.; Morella, I.; Orellana, D.; d'Isa, R.; Papale, A.; Parra, R.; Gurgone, A.; Lecca, D.; Cavaccini, A.; Tigaret, C. M.; Ratto, G. M.; Carta, A. R.; Giustetto, M.; Middei, S.; Tonini, R.; Hall, J.; Brooks, S.; Thomas, K.; Brambilla, R.; Fasano, S.

10.1101/496141 — neuroscience — Posted on 2018-12-21

623 Pharmacological inhibition of PRMT7 links arginine monomethylation to the cellular stress response

Szewczyk, M. M.; Ishikawa, Y.; Organ, S.; Sakai, N.; Li, F.; Ackloo, S.; Eram, M. S.; Dilworth, D.; Fukushi, H.; Harding, R.; dela Sena, C. C.; Sugo, T.; Hayashi, K.; Macleod, D.; Zepeda, C.; Takagi, S.; Al-Awar, R.; Richard, S.; Takizawa, M.; Arrowsmith, C. H.; Vedadi, M.; Brown, P. J.; Nara, H.; Barsyte-Lovejoy, D.

10.1101/503136 — biochemistry — Posted on 2018-12-21

624 Nationwide population genetic screening improves outcomes of newborn screening for hearing loss in China

Wang, Q.; Xiang, J.; Sun, J.; Yang, Y.; Guan, J.; Wang, D.; Song, C.; Guo, L.; Wang, H.; Chen, Y.; Leng, J.; Wang, X.; Zhang, J.; Han, B.; Zou, J.; Yan, C.; Zhao, L.; Luo, H.; Han, Y.; Yuan, W.; Zhang, H.; Wang, W.; Wang, J.; Yang, H.; Xu, X.; Yin, Y.; Morton, C. C.; Zhao, L.; Zhu, S.; Shen, J.; Peng, Z.

10.1101/502088 — genetics — Posted on 2018-12-21

625 Percolation models of pathogen spillover

Washburne, A.; Crowley, D. E.; Manlove, K.; Becker, D. J.; Plowright, R. K.

10.1101/497750 — epidemiology — Posted on 2018-12-21

626 A Modeling Framework for Exploring Sampling and Observation Process Biases in Genome and Phenome-wide Association Studies using Electronic Health Records

Beesley, L. J.; Fritsche, L. G.; Mukherjee, B.

10.1101/499392 — epidemiology — Posted on 2018-12-21

627 Getting personal: how vaccination exemptions shapeherd immunity

Nedell, E. R.; Garnier, R.; Omer, S. B.; Bansal, S.

10.1101/500553 — epidemiology — Posted on 2018-12-21

628 MOGSA: integrative single sample gene-set analysis of multiple omics data

Meng, C.; Basunia, A.; Peters, B.; Moghaddas Gholami, A.; Kuster, B.; Culhane, A. C.

10.1101/046904 — bioinformatics — Posted on 2018-12-21

629 Anesthesia-induced loss of consciousness disrupts auditory responses beyond primary cortex

Krom, A. J.; Marmelshtein, A.; Gelbard-Sagiv, H.; Tankus, A.; Hayat, D.; Matot, I.; Strauss, I.; Fahoum, F.; Soehle, M.; Boström, J.; Mormann, F.; Fried, I.; Nir, Y.

10.1101/502385 — neuroscience — Posted on 2018-12-21

630 Structuring Time in Human Lateral Entorhinal Cortex

Bellmund, J. L. S.; Deuker, L.; Doeller, C. F.

10.1101/458133 — neuroscience — Posted on 2018-12-21

631 Viral metagenomic analysis of the cheese surface: a comparative study of rapid procedures for extracting virus-like particles

Dugat-Bony, E.; Lossouarn, J.; De Paepe, M.; Sarthou, A.-S.; Fedala, Y.; Petit, M.-A.; Chaillou, S.

10.1101/503599 — microbiology — Posted on 2018-12-21

632 Phototrophic lactate utilization by Rhodopseudomonas palustris is stimulated by co-utilization with additional substrates

Govindaraju, A.; McKinlay, J. B.; LaSarre, B.

10.1101/502963 — microbiology — Posted on 2018-12-21

633 Population genomics perspectives on convergent adaptation

Lee, K. M.; Coop, G.

10.1101/503284 — evolutionary biology — Posted on 2018-12-21

634 Molecular Evolution of Pseudomonas syringae Type III Secreted Effector Proteins

Dillon, M. M.; Almeida, R. N.; Laflamme, B.; Martel, A.; Weir, B. S.; Desveaux, D.; Guttman, D. S.

10.1101/503219 — evolutionary biology — Posted on 2018-12-21

635 Clinical characteristics of bloodstream infections associated with endemic Methicillin-resistant Staphylococcus aureus clones

Dupper, A.; Sullivan, M. J.; Chacko, K. I.; Mishkin, A.; Ciferri, B.; Oussenko, I.; Kumaresh, A.; Beckford, C.; Zeitouni, N. E.; Sebra, R.; Hamula, C.; Smith, M.; Kasarskis, A.; Patel, G.; McBride, R. B.; van Bakel, H.; Altman, D. R.

10.1101/501833 — epidemiology — Posted on 2018-12-21

636 Urinary biomarkers and cardiovascular outcomes in the UK Biobank: observational and Mendelian randomization analyses

Zanetti, D.; Bergman, H.; Burgess, S.; Assimes, T. L.; Bhalla, V.; Ingelsson, E.

10.1101/499483 — epidemiology — Posted on 2018-12-21

637 Schizophrenia polygenic risk scores, urbanicity and treatment-resistant schizophrenia

Gasse, C.; Wimberley, T.; Wang, Y.; Horsdal, H. T.

10.1101/501288 — epidemiology — Posted on 2018-12-21

638 The association of plasma lipids with white blood cell counts: Results from the Multi-Ethnic Study of Atherosclerosis

Lai, Y. C.; Woollard, K.; McClelland, R.; Allison, M.; Rye, K.-A.; Ong, K. L.; Cochran, B. J.

10.1101/488023 — epidemiology — Posted on 2018-12-21

639 GLU: A tool for analysing continuously measured glucose in epidemiology

Millard, L. A.; Patel, N.; Tilling, K.; Lewcock, M.; Flach, P. A.; Lawlor, D. A.

10.1101/500256 — epidemiology — Posted on 2018-12-21

640 Supporting decision making: Modeling and forecasting measles in a London borough

Edlund, S.; Lovett, D.; Kaufman, J.; Yagci Sokat, K.; van Wijgerden, J.; Poots, A. J.

10.1101/497800 — epidemiology — Posted on 2018-12-21

641 Estimating prevalence for limb-girdle muscular dystrophy based on public sequencing databases

Liu, W.; Pajusalu, S.; Lake, N.; Zhou, G.; Williams, B.; Rufibach, L.; Lek, M.

10.1101/502708 — epidemiology — Posted on 2018-12-21

642 Evidence that population increase and range expansion by Eurasian Sparrowhawks has impacted avian prey populations

Bell, C. P.

10.1101/491522 — ecology — Posted on 2018-12-21

643 Effects of varenicline and cognitive bias modification on neural response to smoking-related cues: a randomised control trial

Attwood, A. S.; Williams, T. M.; McClernon, F. J.; Kozink, R.; Adams, S.; Scheeres, K.; Green, A.; Christmas, D.; Munafo, M. R.

10.1101/480566 — clinical trials — Posted on 2018-12-21

644 Biomarkers of collagen synthesis predict progression in the PROFILE idiopathic pulmonary fibrosis cohort

Organ, L.; Duggan, A.-M.; Oballa, E.; Taggart, S.; Simpson, J.; Kang'Ombe, A.; Braybrooke, R.; Molyneaux, P.; Leeming, D.; Karsdall, M.; Nanthakumar, C.; Fahy, W.; Marshall, R.; Jenkins, G.; Maher, T.

10.1101/497156 — clinical trials — Posted on 2018-12-21

645 WRN Helicase is a Synthetic Lethal Target in Microsatellite Unstable Cancers

Chan, E.; Shibue, T.; McFarland, J.; Gaeta, B.; McPartlan, J.; Ghandi, M.; Liu, J. B.; Lazaro, J.-B.; Dumont, N.; Gonzalez, A.; Apffel, A.; Ali, S. O.; Leung, L.; Roberts, E.; Rizvochenko, E.; Islam, M.; Alimova, M.; Schenone, M.; Maruvka, Y.; Liu, Y.; D'Andrea, A.; Root, D.; Boehm, J.; Getz, G.; Golub, T.; Tserniak, A.; Vazquez, F.; Bass, A. J.

10.1101/502070 — cancer biology — Posted on 2018-12-21

646 Low-Density Lipoprotein Receptor-Mediated Lipidome-Transcriptome Reprogramming Impulses to Cisplatin Insensitivity

Chang, W.-C.; Wang, H.-C.; Cheng, W.-C.; Yang, J.-C.; Chung, W.-M.; Chen, L.; Ho, Y.-P.; Hung, Y.-C.; Ma, W.-L.

10.1101/502401 — cancer biology — Posted on 2018-12-21

647 Alkane and wax ester production from lignin derived molecules

Salmela, M.; Lehtinen, T.; Efimova, E.; Santala, S.; Santala, V. P.

10.1101/502468 — bioengineering — Posted on 2018-12-21

648 Immunological responses to the relapsing fever spirochete Borrelia turicatae in infected Rhesus macaques: implications for pathogenesis and diagnosis.

Embers, M. E.; Krishnavjhala, A.; Armstrong, B.; Curtis, M. W.; Pahar, B.; Wilder, H. K.; Allen, M. S.; Beare, P. A.; Hasenkampf, N. R.; Lopez, J. E.

10.1101/503615 — immunology — Posted on 2018-12-21

649 The importance of selected markers of inflammation and blood-brain barrier damage for short-term post-stroke prognosis

Lasek-Bal, A.; Jedrzejowska-Szypułka, H.; Student, S.; Warsz-Wianecka, A.; Zareba, K.; Puz, P.; Bal, W.; Pawletko, K.; Lewin-Kowalik, J.

10.1101/503953 — neuroscience — Posted on 2018-12-21

650 Optimization of DNA extraction from human urinary samples for mycobiome community profiling

Ackerman, A. L.; Anger, J. T.; Khalique, M. U.; Ackerman, J. E.; Tang, J.; Kim, J.; Underhill, D. M.; Freeman, M. R.; Multidisciplinary Approach to the Study of Pelvic Pain (MAPP),

10.1101/503946 — microbiology — Posted on 2018-12-21

651 Genome characterization, prevalence and transmission mode of a novel picornavirus associated with the Threespine Stickleback (Gasterosteus aculeatus)

Hahn, M. A.; Dheilly, N. M.

10.1101/502195 — microbiology — Posted on 2018-12-21

652 Identifying small molecule probes of ENTPD5 through high throughput screening

Durst, M. A.; Ratia, K.; Lavie, A.

10.1101/503938 — biochemistry — Posted on 2018-12-21

653 Trichoderma asperelloides enhances local (LAR) and systemic acquired resistance (SAR) response under low nitrate nutrition in Arabidopsis

Wany, A.; Pathak, P. K.; Gupta, K. J.

10.1101/502492 — plant biology — Posted on 2018-12-20

654 Dual language experience enhances neural activation variability during an fMRI reading and language task

Malins, J. G.; D'Silva, H.; Luk, G.; Hernandez, A. E.; Frost, S. J.; Pugh, K. R.; Mencl, W. E.; Mehta, C.; Bosson-Heenan, J.; Gruen, J. R.

10.1101/502625 — neuroscience — Posted on 2018-12-20

655 Emergence of the East-Central-South-African genotype of Chikungunya virus in Brazil and the city of Rio de Janeiro may have occurred years before surveillance detection

Souza, T.; Rangel Vieira, Y.; Delatorre, E.; Barbosa-Lima, G.; Leal Faria Luiz, R.; Vizzoni, A.; Jain, K.; Mesquita, M.; Bhuva, N.; Gogarten, J. F.; Ng, J.; Thakkar, R.; Surrage Calheiros, A.; Teixeira Monteiro, A. P.; Bozza, P. T.; Bozza, F. A.; Tschoeke, D. A.; Leomil, L.; Lima de Mendonca, M. C.; Damasceno dos Santos Rodrigues, C.; Torres, M. C.; Bispo de Filippis, A. M.; Ribeiro Nogueira, R. M.; Thompson, F. L.; Lemos, C.; Durovni, B.; Cerbino-Neto, J.; Morel, C. M.; Lipkin, I.; Mishra, N.

10.1101/502443 — genomics — Posted on 2018-12-20

656 Nessys: a novel method for accurate nuclear segmentation in 3D

Blin, G.; Sadurska, D.; Portero Migueles, R.; Chen, N.; Watson, J. A.; Lowell, S.

10.1101/502872 — developmental biology — Posted on 2018-12-20

657 Inferring biochemical reactions and metabolite structures to cope with metabolic pathway drift

Belcour, A.; Girard, J.; Aite, M.; Delage, L.; Trottier, C.; Marteau, C.; Leroux, C.; Dittami, S.; Sauleau, P.; corre, e.; Nicolas, J.; Boyen, C.; Leblanc, C.; Collen, J.; Siegel, A.; Markov, G.

10.1101/462556 — systems biology — Posted on 2018-12-20

658 Simulating the Monty Hall problem in a DNA sequencing machine

Mamet, N.; Harari, G.; Zamir, A.; Bachelet, I.

10.1101/502435 — synthetic biology — Posted on 2018-12-20

659 The sensory coding of warm perception

Paricio-Montesinos, R.; Schwaller, F.; Udhayachandran, A.; Walcher, J.; Evangalista, R.; Poulet, J. F. A.; Lewin, G. R.

10.1101/502369 — neuroscience — Posted on 2018-12-20

660 Microglia-dependent presynaptic disruption in an organotypic hippocampal slice culture model of neuroinflammation

Sheppard, O.; Coleman, M. P.; Durrant, C. S.

10.1101/502559 — neuroscience — Posted on 2018-12-20

661 Visual exposure optimizes stimulus encoding in primary visual cortex

Lazar, A.; Lewis, C.; Fries, P.; Singer, W.; Nikolic, D.

10.1101/502328 — neuroscience — Posted on 2018-12-20

662 The translatome of adult cortical axons is regulated by learning in vivo

Ostroff, L. E.; Santini, E.; Sears, R.; Deane, Z.; LeDoux, J.; Lhakhang, T.; Tsirigos, A.; Heguy, A.; Klann, E.

10.1101/502419 — neuroscience — Posted on 2018-12-20

663 Plasmacytoid dendritic cells are functionally exhausted while non-haematopoietic sources of type I interferon dominate human autoimmunity

Psarras, A.; Alase, A.; Antanaviciute, A.; Carr, I. M.; Md Yusof, M. Y.; Wittmann, M.; Emery, P.; Tsokos, G. C.; Vital, E. M.

10.1101/502047 — immunology — Posted on 2018-12-20

664 Scaling tree-based automated machine learning to biomedical big data with a dataset selector

Le, T. T.; Fu, W.; Moore, J. H.

10.1101/502484 — genomics — Posted on 2018-12-20

665 Zebrafish larvae as a model system for systematic characterization of drugs and genes in dyslipidemia and atherosclerosis

Bandaru, M. K.; Emmanouilidou, A.; Ranefall, P.; von der Heyde, B.; Mazzaferro, E.; Klingstroem, T.; Masiero, M.; Dethlefsen, O.; Ledin, J.; Larsson, A.; Brooke, H. L.; Wahlby, C.; Ingelsson, E.; den Hoed, M.

10.1101/502674 — genomics — Posted on 2018-12-20

666 Genome-wide Association Study of Multisite Chronic Pain in UK Biobank

Johnston, K. J. A.; Adams, M. J.; Nicholl, B. I.; Ward, J.; Strawbridge, R.; Ferguson, A.; McIntosh, A.; Bailey, M. E. S.; Smith, D. J.

10.1101/502807 — genetics — Posted on 2018-12-20

667 Evolution of photochemical reaction centres: more twists?

Cardona, T.; Rutherford, A. W.

10.1101/502450 — evolutionary biology — Posted on 2018-12-20

668 Precision phenotyping reveals novel loci for quantitative resistance to septoria tritici blotch in European winter wheat

Yates, S.; Mikaberidze, A.; Krattinger, S.; Abrouk, M.; Hund, A.; Yu, K.; Studer, B.; Fouche, S.; Meile, L.; Pereira, D.; Karisto, P.; McDonald, B.

10.1101/502260 — plant biology — Posted on 2018-12-20

669 Remote focusing system for simultaneous dual-plane mesoscopic multiphoton imaging

Tsyboulski, D.; Orlova, N.; Griffin, F.; Seid, S.; Lecoq, J.; Saggau, P.

10.1101/503052 — neuroscience — Posted on 2018-12-20

670 Towards Spider Glue: Long-read scaffolding for extreme length and repetitious silk family genes AgSp1 and AgSp2 with insights into functional adaptation

Stellwagen, S. D.; Renberg, R. L.

10.1101/492025 — genetics — Posted on 2018-12-20

671 Seed masting causes fluctuations in optimum litter size and lag load in a seed predator

McAdam, A.; Boutin, S.; Dantzer, B.; Lane, J.

10.1101/502146 — evolutionary biology — Posted on 2018-12-20

672 Visualizing murine placental extracellular vesicle data with tidyNano: a computational framework for analyzing and visualizing nanoparticle data in R

Nguyen, S. L.; Greenberg, J. W.; Wang, H.; Collaer, B. W.; Wang, J.; Petroff, M. G.

10.1101/503292 — cell biology — Posted on 2018-12-20

673 Dashing: Fast and Accurate Genomic Distances with HyperLogLog

Baker, D. N.; Langmead, B.

10.1101/501726 — bioinformatics — Posted on 2018-12-20

674 A simple egg marking method for polygynous fishes

Solomon-Lane, T. K.; Grober, M. S.

10.1101/502179 — physiology — Posted on 2018-12-20

675 Sex differences in the relationship between social difficulties and executive dysfunction in children and adolescents with autism spectrum disorder

Torske, T.; Naerland, T.; Quintana, D. S.; Hypher, R. E.; Kaale, A.; Hoyland, A. L.; Hope, S.; Johannessen, J.; Oie, M. G.; Andreassen, O. A.

10.1101/501932 — neuroscience — Posted on 2018-12-20

676 ASCOT identifies key regulators of neuronal subtype-specific splicing

Ling, J. P.; Wilks, C.; Charles, R.; Ghosh, D.; Jiang, L.; Santiago, C. P.; Pang, B.; Venkataraman, A.; Clark, B. S.; Nellore, A.; Langmead, B.; Blackshaw, S.

10.1101/501882 — neuroscience — Posted on 2018-12-20

677 Exploration of Anti-Yo and Anti-Hu paraneoplastic neurological disorders by PhIP-Seq reveals a highly restricted pattern of antibody epitopes

O'Donovan, B. D.; Mandel-Brehm, C.; Vazquez, S. E.; Liu, J.; Parent, A. V.; Anderson, M. S.; Kassimatis, T.; Zekeridou, A.; Hauser, S. L.; Pittock, S. J.; Chow, E.; Wilson, M. R.; DeRisi, J. L.

10.1101/502187 — immunology — Posted on 2018-12-20

678 Family-specific genotype arrays increase the accuracy of pedigree based imputation at very low marker densities

Whalen, A.; Hickey, J. M.; Gorjanc, G.

10.1101/502989 — genetics — Posted on 2018-12-20

679 Cis and trans-acting variants contribute to survivorship in a naive Drosophila melanogaster population exposed to ryanoid insecticides

Green, L.; Battlay, P.; FOURNIER-LEVEL, A.; Good, R. T.; Robin, C.

10.1101/502161 — genetics — Posted on 2018-12-20

680 Intrinsic polarization cues interfere with pheromone gradient sensing in S. cerevisiae

Vasen, G.; Colman Lerner, A.

10.1101/502856 — cell biology — Posted on 2018-12-20

681 Community venomics reveals intra-species variations in venom composition of a local population of Vipera kaznakovi in Northeastern Turkey

Petras, D.; Hempel, B.-F.; Gocmen, B.; Karis, M.; Whiteley, G.; Wagstaff, S. C.; Heiss, P.; Casewell, N. R.; Nalbantsoy, A.; Suessmuth, R. D.

10.1101/503276 — biochemistry — Posted on 2018-12-20

682 Motion-in-depth perception and prey capture in the praying mantis

Nityananda, V.; Joubier, C.; Tan, J.; Tarawneh, G.; Read, J. C. A.

10.1101/502583 — animal behavior and cognition — Posted on 2018-12-20

683 Excess light priming in Arabidopsis thaliana with altered DNA methylomes

Ganguly, D. R.; Stone, B. A.; Eichten, S. R.; Pogson, B. J.

10.1101/475798 — plant biology — Posted on 2018-12-20

684 Internal model recalibration does not deteriorate with age while motor adaptation does.

Vandevoorde, K.; Orban de Xivry, J.-J.

10.1101/292250 — neuroscience — Posted on 2018-12-20

685 Sensory Cue Combination in Children Under 10 Years of Age

Negen, J.; Chere, B.; Bird, L.; Taylor, E.; Roome, H. E.; Keenaghan, S.; Thaler, L.; Nardini, M.

10.1101/501585 — neuroscience — Posted on 2018-12-20

686 Prophages and satellite prophages are widespread among Streptococcus species and may play a role in pneumococcal pathogenesis

Rezaei Javan, R.; Ramos-Sevillano, E.; Akter, A.; Brown, J.; Brueggemann, A.

10.1101/502740 — genomics — Posted on 2018-12-20

687 Testing Structural Models of Psychopathology at the Genomic Level

Luningham, J. M.; Poore, H. E.; Yang, J.; Waldman, I. D.

10.1101/502039 — genomics — Posted on 2018-12-20

688 Placental DNA methylation levels at CYP2E1 and IRS2 are associated with child outcome in a prospective autism study

Zhu, Y.; Mordaunt, C. E.; Yasui, D. H.; Marathe, R.; Coulson, R.; Dunaway, K.; Walker, C.; Ozonoff, S.; Hertz-Picciotto, I.; Schmidt, R. J.; LaSalle, J. M.

10.1101/501007 — genetics — Posted on 2018-12-20

689 Tarantula phylogenomics: A robust phylogeny of multiple tarantula lineages inferred from transcriptome data sheds light on the prickly issue of urticating setae evolution

Foley, S.; Lueddecke, T.; Chen, D.-Q.; Krehenwinkel, H.; Kuenzel, S.; Longhorn, S.; Wendt, I.; von Wirth, V.; Taenzler, R.; Vences, M.; Piel, W.

10.1101/501262 — evolutionary biology — Posted on 2018-12-20

690 STATISTICAL LOCAL BINARY PATTERNS (SLBP): APPLICATION TO PROSTATE CANCER GLEASON SCORE PREDICTION FROM WHOLE SLIDE PATHOLOGY IMAGES

Xu, H.; Hwang, T. H.

10.1101/503094 — bioinformatics — Posted on 2018-12-20

691 Professional medical writing support and the quality, ethics and timeliness of clinical trial reporting: a systematic review

Evuarherhe, O.; Gattrell, W.; White, R.; Winchester, C. C.

10.1101/501403 — scientific communication and education — Posted on 2018-12-20

692 Δ9-tetrahydrocannabinol negatively regulates neurite outgrowth and Akt signaling in hiPSC-derived cortical neurons.

Shum, C.; Dutan, L.; Annuario, E.; Warre-Cornish, K.; Taylor, S.; Taylor, R.; Andreae, L.; Buckley, N. J.; Price, J.; Bhattacharyya, S.; Srivastava, D. P.

10.1101/440909 — neuroscience — Posted on 2018-12-20

Kucyi, A.; Daitch, A.; Raccah, O.; Zhao, B.; Zhang, C.; Esterman, M.; Zeineh, M.; Halpern, C. H.; Zhang, K.; Zhang, J.; Parvizi, J.

10.1101/503193 — neuroscience — Posted on 2018-12-20

694 The validity and consistency of continuous joystick response in perceptual decision-making.

Szul, M. J.; Bompas, A.; Sumner, P.; Zhang, J.

10.1101/501536 — neuroscience — Posted on 2018-12-20

695 Propionic acid promotes the virulent phenotype of Crohns disease-associated adherent-invasive Escherichia coli

Ormsby, M. J.; Johnson, S. A.; Meikle, L. M.; Goldstone, R. J.; McIntosh, A.; Wessel, H. M.; Hulme, H. E.; McConnachie, C. C.; Connolly, J. P.; Roe, A. J.; Hasson, C.; Boyd, J.; Fitzgerald, E.; Gerasimidis, K.; Morrison, D.; Hold, G.; Hansen, R.; Smith, D. G.; Wall, D. M.

10.1101/387647 — microbiology — Posted on 2018-12-20

696 Genetic analyses of medication-use and implications for precision medicine

Wu, Y.; Byrne, E. M.; Zheng, Z.; Kemper, K. E.; Yengo, L.; Mallett, A. J.; Yang, J.; Visscher, P. M.; Wray, N. R.

10.1101/501049 — genetics — Posted on 2018-12-20

697 Adaptive consumer-resource models can explain diauxic shifts and the violation of the Competitive Exclusion Principle

Pacciani-Mori, L.; Suweis, S.; Maritan, A.

10.1101/385724 — ecology — Posted on 2018-12-20

698 Soil respiration in a tropical montane grassland ecosystem is largely heterotroph-driven and increases under simulated warming

Tiruvaimozhi, Y. V.; Sankaran, M.

10.1101/501155 — ecology — Posted on 2018-12-20

699 Cyclin A triggers Mitosis either via Greatwall or Cyclin B

Hegarat, N.; Crncec, A.; Suarez Peredo Rodriguez, M. F.; Echegaray Iturra, F.; Gu, Y.; Lang, P. F.; Barr, A. R.; Bakal, C.; Kanemaki, M. T.; Lamond, A. I.; Novak, B.; Ly, T.; Hochegger, H.

10.1101/501684 — cell biology — Posted on 2018-12-20

700 The elasticity of individual protocadherin 15 molecules implicates cadherins as the gating springs for hearing

Bartsch, T. F.; Hengel, F. E.; Oswald, A.; Dionne, G.; Chipendo, I. V.; Mangat, S. S.; El Shatanofy, M.; Shapiro, L.; Mueller, U.; Hudspeth, A. J.

10.1101/503029 — biophysics — Posted on 2018-12-20

701 Structural basis for activation of Dot1L methyltransferase on the nucleosome by histone H2BK120 ubiquitylation

Anderson, C. J.; Baird, M. R.; Hsu, A.; Barbour, E. H.; Koyama, Y.; Borgnia, M. J.; McGinty, R. K.

10.1101/503128 — biophysics — Posted on 2018-12-20

702 A computational platform for high-throughput analysis of RNA sequences and modifications by mass spectrometry

Wein, S.; Andrews, B.; Sachsenberg, T.; Santos-Rosa, H.; Kohlbacher, O.; Kouzarides, T.; Garcia, B. A.; Weisser, H.

10.1101/501668 — bioinformatics — Posted on 2018-12-20

703 In silico prediction of blood cholesterol levels from genotype data

Reggiani, F.; Carraro, M.; Belligoli, A.; Sanna, M.; dal Pra', C.; Favaretto, F.; Ferrari, C.; Vettor, R.; Tosatto, S. C. E.

10.1101/503003 — systems biology — Posted on 2018-12-20

704 Partial-resistance against aphids in wild barley involves phloem and mesophyll-based defences

Leybourne, D. J.; Valentine, T. A.; Robertson, J. A. H.; Perez-Fernandez, E.; Main, A. M.; Karley, A. J.; Bos, J. I. B.

10.1101/502476 — plant biology — Posted on 2018-12-20

705 Evolution of metabolic novelty: a trichome-expressed invertase creates specialized metabolic diversity in wild tomato

Leong, B. J.; Lybrand, D.; Lou, Y.-R.; Fan, P.; Schilmiller, A. L.; Last, R. L.

10.1101/502971 — plant biology — Posted on 2018-12-20

706 Midfrontal theta phase coordinates behaviorally relevant brain computations during response conflict

Duprez, J.; Gulbinaite, R.; Cohen, M. X.

10.1101/502716 — neuroscience — Posted on 2018-12-20

707 Build-up of serial dependence in color working memory

Barbosa, J.; Compte, A.

10.1101/503185 — neuroscience — Posted on 2018-12-20

708 Single-cell analysis of Crohn’s disease lesions identifies a pathogenic cellular module associated with resistance to anti-TNF therapy

Martin, J. C.; Boschetti, G.; Chang, C.; Ungaro, R.; Giri, M.; Chuang, L.-S.; Nayar, S.; Greenstein, A.; Dubinsky, M.; Walker, L.; Leader, A.; Fine, J.; Whitehurst, C.; Mbow, L.; Kugathasan, S.; Denson, L.; Hyams, J.; Friedman, J.; Desai, P.; Ko, M.; Laface, I.; Akturk, G.; Schadt, E.; Gnjatic, S.; Rahman, A.; Merad, M.; Cho, J.; Kenigsberg, E.

10.1101/503102 — immunology — Posted on 2018-12-20

709 Established rodent community delays recovery of dominant competitor following experimental disturbance

Christensen, E. M.; Simpson, G. L.; Ernest, M.

10.1101/503078 — ecology — Posted on 2018-12-20

710 Spatio-temporal variation of skeletal Mg-calcite in Antarctic marine calcifiers in a global change scenario

Figuerola, B.; Gore, D.; Johnstone, G.; Stark, J.

10.1101/502765 — ecology — Posted on 2018-12-20

711 Cell type purification by single-cell transcriptome-trained sorting

Baron, C. S.; Barve, A.; Muraro, M. J.; Dharmadhikari, G.; van der Linden, R.; Lyubimova, A.; de Koning, E. J.; van Oudenaarden, A.

10.1101/502773 — bioinformatics — Posted on 2018-12-20

712 Critical dynamics are a homeostatic set point of cortical networks in vivo.

Ma, Z.; Turrigiano, G. G.; Wessel, R.; Hengen, K. B.

10.1101/503243 — neuroscience — Posted on 2018-12-20

713 Small RNA bidirectional crosstalk during the interaction between wheat and Zymoseptoria tritici

Ma, X.; Bologna, N.; Palma-Guerrero, J.

10.1101/501593 — molecular biology — Posted on 2018-12-20

714 Identification of novel common variants associated with chronic pain using conditional false discovery rate analysis with major depressive disorder and assessment of pleiotropic effects of LRFN5.

Johnston, K. J. A.; Adams, M. J.; Nicholl, B. I.; Ward, J.; Strawbridge, R. J.; McIntosh, A.; Smith, D. J.; Bailey, M. E. S.

10.1101/495846 — genetics — Posted on 2018-12-20

715 Estimating heritability of complex traits in admixed populations with summary statistics

Luo, Y.; Li, X.; Wang, X.; Gazal, S.; Mercader, J. M.; Neale, B.; Florenz, J. C.; Auton, A.; Price, A.; Finucane, H. K.; Raychaudhuri, S.

10.1101/503144 — genetics — Posted on 2018-12-20

716 Novel Methods for Epistasis Detection in Genome-Wide Association Studies

Slim, L.; Chatelain, C.; Azencott, C.-A.; Vert, J.-P.

10.1101/442749 — bioinformatics — Posted on 2018-12-20

717 Cortical patterning of abnormal morphometric similarity in psychosis is associated with brain expression of schizophrenia related genes

Morgan, S. E.; Seidlitz, J.; Whitaker, K.; Romero-Garcia, R.; Clifton, N. E.; Scarpazza, C.; van Amelsvoort, T.; Marcelis, M.; van Os, J.; Donohoe, G.; Mothersill, D.; Corvin, A.; Pocklington, A.; Raznahan, A.; McGuire, P.; The PSYSCAN Consortium, ; Vertes, P. E.; Bullmore, E. T.

10.1101/501494 — neuroscience — Posted on 2018-12-20

Torrents de la Pena, A.; Rantalainen, K.; Cottrell, C. A.; Allen, J. D.; van Gils, M. J.; Torres, J. L.; Crispin, M.; Sanders, R. W.; Ward, A. B.

10.1101/500975 — immunology — Posted on 2018-12-20

719 In situ estimation of genetic variation of functional and ecological traits in Quercus petraea and Q. robur

Alexandre, H.; Truffaut, L.; Ducousso, A.; Louvet, J.-M.; Nepveu, G.; Torres-Ruiz, J. M.; Lagane, F.; Firmat, C.; Musch, B.; Delzon, S.; Kremer, A.

10.1101/501387 — evolutionary biology — Posted on 2018-12-20

720 The hippocampus encodes delay and value information during delay-discounting decision making

Masuda, A.; Sano, C.; Zhang, Q.; Goto, H.; McHugh, T. J.; Fujisawa, S.; Itohara, S.

10.1101/495598 — neuroscience — Posted on 2018-12-20

721 MicroRNAs reinforce repression of PRC2 transcriptional targets independently and through a feed-forward regulatory network

Shivram, H.; Le, S. V.; Iyer, V. R.

10.1101/298919 — genomics — Posted on 2018-12-20

722 The return of the trophic chain: fundamental vs realized interactions in a simple arthropod food web

Torres-Campos, I.; Magalhaes, S.; Moya-Larano, J.; Montserrat, M.

10.1101/324178 — ecology — Posted on 2018-12-20

723 When can we trust population trends? Quantifying the effects of sampling interval and duration

Wauchope, H. S.; Johnston, A.; Amano, T.; Sutherland, W. J.

10.1101/498170 — ecology — Posted on 2018-12-20

724 Co-occurrence of contrasting life-history strategies in a metapopulation inhabiting temporally variable and stable breeding sites

Cayuela, H.; Cruickshank, S.; Brandt, H.; Ozgul, A.; Schmidt, B.

10.1101/500942 — ecology — Posted on 2018-12-20

725 The flower flies and the unknown diversity of Drosophilidae (Diptera): a biodiversity inventory in the Brazilian fauna

Schmitz, H. J.; Valente, V. L. d. S.

10.1101/402834 — zoology — Posted on 2018-12-20

726 Mutators as drivers of adaptation in Streptococcus and a risk factor for host jumps and vaccine escape

Silayeva, O.; Engelstaedter, J.; Barnes, A. C.

10.1101/355412 — microbiology — Posted on 2018-12-20

727 Rapid evolution by spontaneous mutation increases genetic diversity facilitating plant population survival

Nottebrock, H.; Weng, M.-L.; Rutter, M. T.; Fenster, C. B.

10.1101/497610 — ecology — Posted on 2018-12-20

728 NRF2 activates a partial Epithelial-Mesenchymal Transition and is maximally present in a hybrid Epithelial/Mesenchymal phenotype

Bocci, F.; Tripathi, S. C.; Vilchez Mercedes, S.; George, J. T.; Casabar, J.; Wong, P. K.; Hanash, S.; Levine, H.; Onuchic, J. N.; Jolly, M. K.

10.1101/390237 — cancer biology — Posted on 2018-12-20

729 Integrin α6β4 recognition of a linear motif of bullous pemphigoid antigen BP230 controls its recruitment to hemidesmosomes

Manso, J. A.; Gomez-Hernandez, M.; Carabias, A.; Alonso-Garcia, N.; Garcia-Rubio, I.; Kreft, M.; Sonnenberg, A.; de Pereda, J. M.

10.1101/402123 — biophysics — Posted on 2018-12-20

730 Structural Modeling of Gamma-Secretase Aβn ComplexFormation and Substrate Processing

Hitzenberger, M.; Zacharias, M.

10.1101/500488 — biophysics — Posted on 2018-12-20

731 Isogenic organisms age at different rates due to critical-slowing-down of damage removal

Karin, O.; Agrawal, A.; Porat, Z.; Krizhanovsky, V.; Alon, U.

10.1101/470500 — systems biology — Posted on 2018-12-20

732 An interaction map of transcription factors controlling gynoecium development in Arabidopsis

Herrera-Ubaldo, H.; Campos, S. E.; Luna Garcia, V.; Zuniga-Mayo, V. M.; Armas-Caballero, G.; DeLuna, A.; Marsch-Martinez, N.; de Folter, S.

10.1101/500736 — plant biology — Posted on 2018-12-20

733 Connecting the legs with a spring improves human running economy

Simpson, C.; Welker, C.; Uhlrich, S.; Sketch, S.; Jackson, R.; Delp, S.; Collins, S.; Selinger, J.; Hawkes, E.

10.1101/474650 — physiology — Posted on 2018-12-20

734 High-order theta harmonics account for the detection slow gamma

Zhou, Y.; Sheremet, A.; Qin, Y.; Kennedy, J. P.; DiCola, N. M.; Maurer, A. P.

10.1101/428490 — neuroscience — Posted on 2018-12-20

735 Focusing on what matters: Modulation of the human hippocampus by relational attention

Cordova, N. I.; Turk-Browne, N. B.; Aly, M.

10.1101/446443 — neuroscience — Posted on 2018-12-20

736 Gene-centric functional dissection of human genetic variation uncovers regulators of hematopoiesis

Nandakumar, S. K.; McFarland, S. K.; Mateyka, L. M.; Lareau, C. A.; Ulirsch, J. C.; Ludwig, L. S.; Agarwal, G.; Engreitz, J. M.; Przychodzen, B.; McConkey, M.; Cowley, G. S.; Doench, J. G.; Maciejewski, J.; Ebert, B. L.; Root, D. E.; Sankaran, V. G.

10.1101/500579 — genomics — Posted on 2018-12-20

737 Bipolar multiplex families have an increased burden of common risk variants for psychiatric disorders

Andlauer, T. F. M.; Guzman-Parra, J.; Streit, F.; Strohmaier, J.; Gonzalez, M. J.; Gil Flores, S.; Cabaleiro Fabeiro, F. J.; del Rio Noriega, F.; Perez Perez, F.; Haro Gonzalez, J.; Orozco Diaz, G.; de Diego-Otero, Y.; Moreno-Kuestner, B.; Auburger, G.; Degenhardt, F.; Heilmann-Heimbach, S.; Herms, S.; Hoffmann, P.; Frank, J.; Foo, J. C.; Treutlein, J.; Witt, S. H.; Cichon, S.; Kogevinas, M.; Bipolar Disorder Working Group of the Psychiatric Genomics Consortium, ; Major Depressive Disorder Working Group of the Psychiatric Genomics Consortium, ; Rivas, F.; Mayoral, F.; Mueller-Myhsok, B.; For

10.1101/468975 — genetics — Posted on 2018-12-20

738 Causal effects of lifetime smoking on risk for depression and schizophrenia: Evidence from a Mendelian randomisation study

Wootton, R. E.; Richmond, R. C.; Stuijfzand, B. G.; Lawn, R. B.; Sallis, H. M.; Taylor, G. M. J.; Jones, H. J.; Zammit, S.; Davey Smith, G.; Munafo, M. R.

10.1101/381301 — epidemiology — Posted on 2018-12-20

739 Evolutionary couplings detect side-chain interactions

Hockenberry, A. J.; Wilke, C. O.

10.1101/447409 — biophysics — Posted on 2018-12-20

740 PhyloSuite: an integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies

Zhang, D.; Gao, F.; Li, W. X.; Jakovlic, I.; Zou, H.; Zhang, J.; Wang, G. T.

10.1101/489088 — bioinformatics — Posted on 2018-12-20

741 Electrostatic-assemblies of single-walled carbon nanotubes and sequence-tunable peptoid polymers detect a lectin protein and its target sugars

Chio, L.; Del Bonis-O'Donnell, J. T.; Kline, M.; Kim, J.-H.; McFarlane, I. R.; Zuckermann, R. N.; Landry, M.

10.1101/500611 — bioengineering — Posted on 2018-12-20

742 In for a pound, in for a penny: How the opportunity to gain reward influences the competition for memory resources

Talmi, D.; Kavaliauskaite, D.; Daw, N. D.

10.1101/464388 — neuroscience — Posted on 2018-12-20

743 Neural dynamics of accumulating and updating linguistic knowledge structures

Berkers, R. M. W. J.; van der Linden, M.; Neville, D. A.; van Kesteren, M. T. R.; Morris, R. G. M.; Murre, J. M. J.; Fernandez, G.

10.1101/495168 — neuroscience — Posted on 2018-12-20

744 fMRI replicability depends upon sufficient individual-level data

Nee, D. E.

10.1101/352633 — neuroscience — Posted on 2018-12-20

745 Integrated accounts of behavioral and neuroimaging data using flexible recurrent neural network models

Dezfouli, A.; Morris, R.; Ramos, F.; Dayan, P.; Balleine, B. W.

10.1101/328849 — neuroscience — Posted on 2018-12-20

746 Relief from nitrogen starvation entails quick unexpected down-regulation of glycolytic/lipid metabolism genes in enological Saccharomyces cerevisiae

Tesniere, C.; Bessiere, C.; Pradal, M.; Sanchez, I.; Blondin, B.; Bigey, F.

10.1101/428979 — microbiology — Posted on 2018-12-20

747 Chloroplast competition is controlled by lipid biosynthesis in evening primroses

Sobanski, J.; Giavalisco, P.; Fischer, A.; Kreiner, J.; Walther, D.; Schoettler, M. A.; Pellizzer, T.; Golczyk, H.; Obata, T.; Bock, R.; Sears, B. B.; Greiner, S.

10.1101/330100 — genetics — Posted on 2018-12-20

748 Big DNA as a tool to dissect an age-related macular degeneration-associated haplotype

Laurent, J. M.; Fu, X.; German, S.; Maurano, M. T.; Zhang, K.; Boeke, J. D.

10.1101/461251 — genetics — Posted on 2018-12-20

749 Tradeoffs and cultural diversity

Karin, O.; Alon, U.

10.1101/263905 — evolutionary biology — Posted on 2018-12-20

750 A common deliberative process underlies model-based planning and patient intertemporal choice

Hunter, L. E.; Bornstein, A. M.; Hartley, C. A.

10.1101/499707 — animal behavior and cognition — Posted on 2018-12-20

751 Concerning suppression and facilitation of motion perception in humans

Schallmo, M.-P.; Murray, S.

10.1101/495291 — neuroscience — Posted on 2018-12-20

752 Early and Late Effects of Maternal Experience on Hippocampal Neurogenesis, Microglia, and the Circulating Cytokine Milieu

Eid, R.; Chaiton, J. A.; Lieblich, S. E.; Bodnar, T. S.; Weinberg, J.; Galea, L.

10.1101/388009 — neuroscience — Posted on 2018-12-20

753 Female genetic contributions to sperm competition in Drosophila melanogaster

Chen, D. S.; Delbare, S. Y. N.; White, S. L.; Sitnik, J. L.; Chatterjee, M.; DoBell, E. L.; Weiss, O. D.; Clark, A. G.; Wolfner, M. F.

10.1101/500546 — genetics — Posted on 2018-12-20

754 First detection of tick-borne encephalitis virus in Ixodes ricinus ticks and their rodent hosts in Moscow, Russia

Makenov, M. T.; Karan, L. S.; Shashina, N. I.; Akhmetshina, M. B.; Zhurenkova, O. B.; Kholodilov, I. S.; Karganova, G. G.; Smirnova, N. S.; Grigoreva, Y. E.; Yankovskaya, Y. D.; Fyodorova, M. V.

10.1101/480475 — epidemiology — Posted on 2018-12-20

755 Lasy-Seq: a high-throughput library preparation method for RNA-Seq and its application in the analysis of plant responses to fluctuating temperatures

Kamitani, M.; Kashima, M.; Tezuka, A.; Nagano, A. J.

10.1101/463596 — plant biology — Posted on 2018-12-20

756 Subthalamic nucleus local field potentials recordings reveal subtle effects of promised reward during conflict resolution in Parkinson’s disease

Duprez, J.; Houvenaghel, J.-F.; Dondaine, T.; Peron, J.; Haegelen, C.; Drapier, S.; Modolo, J.; Jannin, P.; Verin, M.; Sauleau, P.

10.1101/454173 — neuroscience — Posted on 2018-12-20

757 Neuronal integration in the adult olfactory bulb is a non-selective addition process

Platel, J.-C.; Angelova, A.; Bugeon, S.; Wallace, J.; Ganay, T.; Chudotvorova, I.; Deloulme, J.-C.; Beclin, C.; Tiveron, M.-C.; Core, N.; Murthy, V.; Cremer, H.

10.1101/289009 — neuroscience — Posted on 2018-12-20

758 The bacterial chromatin protein HupA can remodel DNA and associates with the nucleoid in Clostridium difficile

Oliveira Paiva, A. M.; Friggen, A. H.; Qin, L.; Douwes, R.; Dame, R. T.; Smits, W. K.

10.1101/426809 — microbiology — Posted on 2018-12-20

759 Biospeckle laser digital image processing for quantitative and statistical evaluation of the activity of Ciprofloxacin on Escherichia coli K-12

Grassi, H. C.; Velasquez, A. d. V.; Belandria, O. M.; Lobo-Sulbaran, M. L.; Andrades-Grassi, J. E.; Cabrera, H.; Andrades, E. D. J.

10.1101/479345 — microbiology — Posted on 2018-12-20

760 Drosophila Toll links systemic immunity to long-term intestinal epithelial integrity

Atilano, M.; Glittenberg, M.; Bahuguna, S.; Wang, L.; Ligoxygakis, P.

10.1101/248138 — immunology — Posted on 2018-12-20

761 Mendelian Randomization integrating GWAS and eQTL data reveals genetic determinants of complex and clinical traits

Porcu, E.; Rüeger, S.; Lepik, K.; eQTLGen Consortium, ; Santoni, F. A.; Reymond, A.; Kutalik, Z.

10.1101/377267 — genetics — Posted on 2018-12-20

762 Genome-wide sampling suggests island divergence accompanied by cryptic epigenetic plasticity in Canada lynx

Johnson, J. B.; Murray, D. L.; Shafer, A. B. A.

10.1101/316711 — evolutionary biology — Posted on 2018-12-20

763 CHC22 clathrin initiates biogenesis of the human GLUT4 storage compartment from the early secretory pathway

Camus, S. M.; Camus, M. D.; Figueras-Novoa, C.; Sadacca, L. A.; Esk, C.; Bigot, A.; Gould, G. W.; Kioumourtzoglou, D.; Perez, F.; Bryant, N. J.; Mukherjee, S.; Brodsky, F. M.

10.1101/242941 — cell biology — Posted on 2018-12-20

764 Capturing the Differences between Humoral Immunity in the Normal and Tumor Environments from Repertoire-Seq of B-Cell Receptors Using Supervised Machine Learning

Konishi, H.; Komura, D.; Katoh, H.; Atsumi, S.; Koda, H.; Yamamoto, A.; Seto, Y.; Fukayama, M.; Yamaguchi, R.; Imoto, S.; Ishikawa, S.

10.1101/187120 — bioinformatics — Posted on 2018-12-20

765 Privacy-preserving generative deep neural networks support clinical data sharing

Beaulieu-Jones, B. K.; Wu, Z. S.; Williams, C.; Lee, R.; Bhavnani, S. P.; Byrd, J. B.; Greene, C. S.

10.1101/159756 — bioinformatics — Posted on 2018-12-20

766 A hybrid versatile method for state estimation and feature extraction from the trajectory of animal behavior

Yamazaki, S. J.; Ohara, K.; Ito, K.; Kokubun, N.; Kitanishi, T.; Takaichi, D.; Yamada, Y.; Ikejiri, Y.; Hiramatsu, F.; Fujita, K.; Tanimoto, Y.; Yamazoe-Umemoto, A.; Hashimoto, K.; Sato, K.; Yoda, K.; Takahashi, A.; Ishikawa, Y.; Kamikouchi, A.; Hiryu, S.; Maekawa, T.; Kimura, K. D.

10.1101/198879 — neuroscience — Posted on 2018-12-20

767 mTORC1 Restricts Hepatitis C Virus Replication Through ULK1-mediated Suppression of miR-122 and Facilitates Post-replication Events

Johri, M. K.; Lashkari, H. V.; Vedagiri, D.; Gupta, D.; Harshan, K.

10.1101/446757 — microbiology — Posted on 2018-12-20

768 Cyclosporine A inhibits MRTF-SRF signalling through Na+/K+ ATPase inhibition & Actin remodelling

Burat, B.; Faucher, Q.; Cechova, P.; Arnion, H.; Di Meo, F.; Sauvage, F.-L.; Marquet, P.; Essig, M.

10.1101/492843 — cell biology — Posted on 2018-12-20

769 Magnaporthe oryzae CK2 is involved in rice blast pathogenesis and accumulates in nuclei, nucleoli, at septal and appressoria pores and forms a large ring structure in appressoria

Zhang, L.; Zhang, D.; Chen, Y.; Ye, W.; Lin, Q.; Lu, G.; Ebbole, D. J.; Olsson, S.; Wang, Z.

10.1101/323816 — cell biology — Posted on 2018-12-20

770 Hybrid Automata Library: A modular platform for efficient hybrid modeling with real-time visualization

Bravo, R. R.; Baratchart, E.; West, J.; Schenck, R. O.; Miller, A.; Gallaher, J.; Gatenbee, C. D.; Basanta, D.; Robertson-Tessi, M.; Anderson, A. R. A.

10.1101/411538 — cancer biology — Posted on 2018-12-20

771 AUTOMAGIC: Standardized Preprocessing of Big EEG Data

Pedroni, A.; Bahreini, A.; Langer, N.

10.1101/460469 — neuroscience — Posted on 2018-12-20

772 Genome-wide association study of alcohol consumption in Russian population

Nizamutdinov, I.; Popov, Y.; Romanov, D.; Surkova, E.; Ilinsky, V.; Rakitko, A.

10.1101/498824 — genetics — Posted on 2018-12-20

773 Sphingosine-1-Phosphate (S1P) analogue Phyto-sphingosine-1-Phosphate (P1P) improves the in vitro maturation efficiency of porcine oocytes via regulation of oxidative stress and apoptosis

Park, K.-M.; Wang, J. W.; Yoo, Y.-M.; Jang, J. E.; Choi, M. J.; Hyun, S. H.; Hwang, K. C.; Jeung, E.-B.; Jeong, Y. W.; Hwang, W. S.

10.1101/499798 — developmental biology — Posted on 2018-12-20

774 Proteome thermal stability reflects organ physiology and identifies drug-target engagement in vivo

Perrin, J.; Werner, T.; Kurzawa, N.; Childs, D. D.; Kalxdorf, M.; Rutkowska, A.; Poeckel, D.; Sevin, D. C.; Stonehouse, E.; Strohmer, K.; Heller, B.; Thomson, D.; Vappiani, J.; Krause, J.; Eberl, H. C.; Rau, C. E.; Franken, H.; Huber, W.; Faelth-Savitski, M.; Savitski, M. M.; Bantscheff, M.; Bergamini, G.

10.1101/500306 — cell biology — Posted on 2018-12-20

775 A benchmark of computational CRISPR-Cas9 guide design methods

Bradford, J.; Perrin, D.

10.1101/498782 — bioinformatics — Posted on 2018-12-20

776 Rapid single-cell cytometry data visualization with EmbedSOM

Kratochvil, M.; Koladiya, A.; Balounova, J.; Novosadova, V.; Sedlacek, R.; Fiser, K.; Vondrasek, J.; Drbal, K.

10.1101/496869 — bioinformatics — Posted on 2018-12-20

777 Violating the normality assumption may be the lesser of two evils

Knief, U.; Forstmeier, W.

10.1101/498931 — scientific communication and education — Posted on 2018-12-20

778 Performance - Based Clustering Enables The Study Of Physiological Features Supporting Sustained Attention Capacities

Marques-Carneiro, J. E.; Bonnefond, A.; Staub, B.

10.1101/497206 — neuroscience — Posted on 2018-12-20

779 Network organization of antibody interactions in sequence and structure space: the RADARS model

Prechl, J.

10.1101/438804 — immunology — Posted on 2018-12-20

780 IsoProt: A complete and reproducible workflow to analyse iTRAQ/TMT experiments

Griss, J.; Vinterhalter, G.; Schwaemmle, V.

10.1101/446070 — bioinformatics — Posted on 2018-12-20

781 Detailed analysis of paternal knockout Grb10 mice suggests effects on social stability, rather than social dominance

Rienecker, K.; Chavasse, A.; Moorwood, K.; Ward, A.; Isles, A.

10.1101/493692 — animal behavior and cognition — Posted on 2018-12-20

782 Sex-dependent differences in pain and sleep in a porcine model of Neurofibromatosis type 1

Khanna, R.; Moutal, A.; White, K.; Chefdeville, A.; Negrao de Assis, P.; Cai, S.; Swier, V. J.; Bellampalli, S. S.; Giunta, M. D.; Darbro, B. W.; Quelle, D. E.; Sieren, J. C.; Wallace, M. R.; Rogers, C. S.; Meyerholz, D. K.; Weimer, J. M.

10.1101/495358 — neuroscience — Posted on 2018-12-20

783 Plant breeders should be determining economic weights for a selection index instead of using independent culling for choosing parents in breeding programs with genomic selection

Batista, L.; Gaynor, R. C.; Margarido, G. R. A.; Byrne, T.; Amer, P.; Gorjanc, G.; Hickey, J. M.

10.1101/500652 — genetics — Posted on 2018-12-20

784 Partial-resistance against aphids in wild barley involves phloem and mesophyll-based defences

Leybourne, D. J.; Valentine, T. A.; Robertson, J. A. H.; Perez-Fernandez, E.; Main, A. M.; Karley, A. J.; Bos, J. I. B.

10.1101/502476 — plant biology — Posted on 2018-12-20

785 Theory of concentric β-barrel structures: models of amyloid beta 42 oligomers, annular protofibrils, and transmembrane channels

Guy, H. R.; Durell, S. R.; Kayed, R.

10.1101/499061 — neuroscience — Posted on 2018-12-20

786 Distance-based Protein Folding Powered by Deep Learning

Xu, J.

10.1101/465955 — bioinformatics — Posted on 2018-12-20

787 Using a machine learning approach to complement group level statistics in experimental psychology: A case study to reveal different levels of inhibition in a modified Flanker Task

Krumpe, T.; Scharinger, C.; Rosenstiel, W.; Gerjets, P.; Spueler, M.

10.1101/502278 — neuroscience — Posted on 2018-12-20

788 SYSTEMATIC MAPPING OF CELL WALL MECHANICS IN THE REGULATION OF CELL MORPHOGENESIS

Davi, V.; Guo, H.; Tanimoto, H.; Barrett, K.; Couturier, E.; Boudaoud, A.; Minc, N.

10.1101/502229 — biophysics — Posted on 2018-12-20

789 Upper bound on the biological effects of 50/60 Hz magnetic fields mediated by radical pairs

Hore, P. J.

10.1101/502344 — biophysics — Posted on 2018-12-20

790 Measuring rank robustness in scored protein interaction networks

Bozhilova, L. V.; Whitmore, A. V.; Wray, J.; Reinert, G.; Deane, C. M.

10.1101/502302 — bioinformatics — Posted on 2018-12-20

791 Non-covalently-associated peptides are observed during liquid chromatography-mass spectrometry and affect crosslink analyses

Giese, S.; Belsom, A.; Sinn, L.; Fischer, L.; Rappsilber, J.

10.1101/502351 — bioinformatics — Posted on 2018-12-20

792 The domain architecture of JBP1 suggests synergy between J-base DNA binding and thymidine hydroxylase activity

Adamopoulos, A.; Heidebrecht, T.; Roosendaal, J.; Touw, W. G.; Phan, I.; Beijnen, J.; Perrakis, A.

10.1101/502252 — biochemistry — Posted on 2018-12-20

793 Romantic jealousy is positively associated with fronto-striatal, insula and limbic responses to angry faces

Zheng, X.; Luo, L.; Li, J.; Xu, L.; Zhou, F.; Gao, Z.; Becker, B.; Kendrick, K.

10.1101/502096 — neuroscience — Posted on 2018-12-20

794 The structural basis of translational control by eIF2 phosphorylation

Adomavicius, T.; Guaita, M.; Zhou, Y.; Jennings, M. D.; Latif, Z.; Roseman, A. M.; Pavitt, G. D.

10.1101/501411 — molecular biology — Posted on 2018-12-20

795 AMPK promotes induction of a tumor suppressor FLCN through activation of TFEB independently of mTOR

Collodet, C.; Foretz, M.; Deak, M.; Bultot, L.; Metairon, S.; Viollet, B.; Lefebvre, G.; Raymond, F.; Parisi, A.; Civiletto, G.; Gut, P.; Descombes, P.; Sakamoto, K.

10.1101/499921 — molecular biology — Posted on 2018-12-20

796 Prioritisation of oncology therapeutic targets using CRISPR-Cas9 screening

Behan, F. M.; Iorio, F.; Goncalves, E.; Picco, G.; Beaver, C. M.; Santos, R.; Rao, Y.; Ansari, R.; Harper, S.; Jackson, D. A.; McRae, R.; Pooley, R.; Wilkinson, P.; Dow, D.; Buser-Doepner, C.; Stronach, E. A.; Saez-Rodriguez, J.; Yusa, K.; Mathew, G. J.

10.1101/502005 — cancer biology — Posted on 2018-12-20

797 Decoys provide a scalable platform for the genetic analysis of plant E3 ubiquitin ligases that regulate circadian clock function

Feke, A.; Liu, W.; Hong, J.; Li, M.-W.; Lee, C.-M.; Zhou, E.; Gendron, J.

10.1101/501965 — plant biology — Posted on 2018-12-20

798 Endogenous CRISPR arrays for scalable whole organism lineage tracing

Cotterell, J.; Sharpe, J.

10.1101/501551 — developmental biology — Posted on 2018-12-20

799 The α-tubulin of Laodelphax striatellus facilitates the passage of rice stripe virus (RSV) and enhances horizontal transmission

Li, Y.; Chen, D.; Hu, J.; Zhang, L.; Xiang, Y.; Liu, F.; Yao Li, Danyu Chen, Jia Hu, Lu Zhang, Yin Xiang, Fang Liu,

10.1101/502831 — pathology — Posted on 2018-12-20

800 Inadequate dried blood spot samples for Early Infant Diagnosis, how common and what are the reasons for rejection in Zimbabwe?

Chiku, C.; Zolfo, M.; Senkoro, M.; Mabhala, M.; Tweya, H.; Musasa, P.; Shukusho, F. D.; Mazarura, E.; Mushavi, A.; Mangwanya, D.

10.1101/502500 — molecular biology — Posted on 2018-12-20

801 p62-mediated Selective Autophagy Endows Virus-transformed Cells with Insusceptibility to DNA Damage under Oxidative Stress

Ning, S.; Wang, L.; Howell, M.; Sparks-Wallace, A.; Hawkins, C.; Nicksic, C.; Kohne, C.; Hall, K.; Moorman, J.; Yao, Z. Q.

10.1101/502823 — cancer biology — Posted on 2018-12-20

802 The self-organization model reveals systematic characteristics of aging

Wang, Y.; Huang, T.; Sha, X.; Li, Y.; Xing, C.

10.1101/502815 — systems biology — Posted on 2018-12-20

803 Intentions to use patient-initiated partner notification and acceptability of provider-initiated partner notification for Sexually Transmitted Infections - A cross-sectional survey among minibus taxi drivers in Gauteng Province, South Africa

mokgatle, m. m.; Madiba, S.

10.1101/502724 — scientific communication and education — Posted on 2018-12-20

804 Serological evidence of dengue fever and associated factors in health facilities in Borena Zone, Southern Ethiopia.

Geleta, E. N.

10.1101/502617 — microbiology — Posted on 2018-12-20

805 Asymbiotic nitrogen fixation is greater in soils under long-term no-till versus conventional tillage

Franzen, D. W.; Inglett, P. W.; Gasch, C. K.

10.1101/502757 — microbiology — Posted on 2018-12-20

806 Mother to child blocking of hepatitis B virus and post vaccination serological test in Qinghai province

Xiaojun, M.; Wensheng, B.; Zengping, H.; Puren, L.; Jianhai, Z.; Xitao, A.; Xianglu, Z.; Kezhong, A.; Xueqin, Y.; Yanmei, M.; Zhongjiu, L.; Lianwei, L.; Bingju, G.; Xianglan, L.; Shourong, Z.; Zhen, L.; Jinhua, Z.; Juan, M.; So, S.; Jianmin, Z.

10.1101/502658 — epidemiology — Posted on 2018-12-20

807 Dynamics-function relationship of N-terminal acetyltransferases: the β6β7 loop modulates substrate accessibility to the catalytic site

Abboud, A.; Bedoucha, P.; Byska, J.; Arnesen, T.; Reuter, N.

10.1101/502799 — bioinformatics — Posted on 2018-12-20

808 Source reconstruction of broadband EEG/MEG data using the frequency-adaptive broadband (FAB) beamformer

Treder, M.; Nolte, G.

10.1101/502690 — neuroscience — Posted on 2018-12-20

809 Off-target effects of Cre recombinase reveal limits of adoptive T cell transfers and persistent proliferation of effector CD8 T-cells

Borkner, L.; Drabig, A.; Zheng, X.; Drylewicz, J.; Marandu, T.; Baliu-Pique, M.; van Duikeren, S.; Arens, R.; Tesselaar, K.; Borghans, J. A.; Cicin-Sain, L.

10.1101/502666 — immunology — Posted on 2018-12-20

810 Spatio-temporal variation of skeletal Mg-calcite in Antarctic marine calcifiers in a global change scenario

Figuerola, B.; Gore, D. B.; Johnstone, G.; Stark, J. S.

10.1101/502765 — ecology — Posted on 2018-12-20

811 Spliceosomal Prp8 intein at the crossroads of protein and RNA splicing

Green, C. M.; Li, Z.; Novikova, O.; Bacot-Davis, V. R.; Gao, F.; Banavali, N. K.; Li, H.; Belfort, M.

10.1101/502781 — biochemistry — Posted on 2018-12-20

812 Chilling, irradiation and transport of male Glossina palpalis gambiensis pupae: effect on the emergence, flight ability and survival.

Diallo, S.; Seck, M. T.; Rayaisse, J. B.; Fall, A. G.; Bassene, M. D.; Sall, B.; Sanon, A.; Vreysen, M. J.; Takac, P.; Parker, A. G.; Gimonneau, G.; Bouyer, J.

10.1101/502567 — physiology — Posted on 2018-12-20

813 Biological Potencial of Colletotrichum typhae H.C Greene mycoherbicide for Typha domingensis Pers

Maia, C. B.; Rodrigues de Melo, P. A. F.; Barreto, R. W.; Maffia, L. A.; Pinto, K. M. S.; Rodrigues, A. A. C.; de Souza Serra, I. M. R.; Mesquita, M. L. R.; Mondego, J. M.; da Silva, A. P. G.

10.1101/502526 — pathology — Posted on 2018-12-20

814 Economic performance and cost-effectiveness of using a DEC-salt social enterprise for eliminating the major neglected tropical disease, lymphatic filariasis

Sharma, S.; Smith, M. E.; Reimer, J.; O'Brien, D. B.; Brissau, J. M.; Donahue, M. C.; Carter, C. E.; Michael, E.

10.1101/502542 — epidemiology — Posted on 2018-12-20

815 Molecular epidemiology and high mortality of Crimean-Congo hemorrhagic fever in Oman: a re-emerging infection

Al-Abri, S.; Hewson, R.; Al-Kindi, H.; Al-Abaidani, I.; Al-Jardani, A.; Al-Maani, A.; Almahrouqi, S.; Atkinson, B.; Al-Wahaibi, A.; Al-Rawahi, B.; Bawikar, S.; Beeching, N. J.

10.1101/502641 — epidemiology — Posted on 2018-12-20

816 Antimalarial drug mefloquine kills both trophozoite and cyst stages of Entamoeba

Sauvey, C.; Ehrenkaufer, G.; Debnath, A.; Abagyan, R.

10.1101/501999 — pharmacology and toxicology — Posted on 2018-12-20

817 Text-mining clinically relevant cancer biomarkers for curation into the CIViC database

Lever, J.; Jones, M. R.; Danos, A. M.; Krysiak, K.; Bonakdar, M.; Grewal, J.; Culibrk, L.; Griffith, O. L.; Griffith, M.; Jones, S. J.

10.1101/500686 — bioinformatics — Posted on 2018-12-20

818 Heat stress reveals high molecular mass proteasomes in Arabidopsis thaliana suspension cells cultures

Aristizabal, D.; Rivas, V.; Cassab, G.; Lledias, F.

10.1101/501031 — cell biology — Posted on 2018-12-20

819 Striatal volume and functional connectivity predict weight gain in early-phase psychosis

Homan, P.; Argyelan, M.; Fales, C. L.; DeRosse, P.; Szeszko, P.; Robinson, D. G.; Lencz, T.; Malhotra, A. K.

10.1101/501825 — neuroscience — Posted on 2018-12-19

820 Fibroblast growth factor receptors function redundantly during zebrafish embryonic development

Leerberg, D. M.; Hopton, R. E.; Draper, B. W.

10.1101/501023 — developmental biology — Posted on 2018-12-20

821 Hippocampus activations reflect temporal contexts while medial prefrontal cortex activations reflect ordinal positions during sequence memory in humans

Reeders, P. C.; Allen, T. A.; Mattfeld, A. T.

10.1101/501122 — neuroscience — Posted on 2018-12-19

822 Small RNA bidirectional crosstalk during the interaction between wheat and Zymoseptoria tritici

Ma, X.; Bologna, N.; Palma Guerrero, J.

10.1101/501593 — molecular biology — Posted on 2018-12-19

823 Rapamycin, an Immunosuppressant and mTORC1 Inhibitor, Triples the antidepressant Response Rate of Ketamine at 2 Weeks Following Treatment: A double-blind, placebo-controlled, cross-over, randomized clinical trial

Abdallah, C.; Averill, L. A.; Gueorguieva, R.; Goktas, S.; Purohit, P.; Ranganathan, M.; D'Souza, D. C.; Formica, R.; Southwick, S. M.; Duman, R. S.; Sanacora, G.; Krystal, J.

10.1101/500959 — neuroscience — Posted on 2018-12-19

824 Depopulation of α-synuclein aggregates is associated with rescue of dopamine neuron dysfunction and death in a new Parkinson disease model

Wegrzynowicz, M.; Bar-On, D.; Calo, L.; Anichtchik, O.; Iovino, M.; Xia, J.; Ryazanov, S.; Leonov, A.; Giese, A.; Dalley, J.; Griesinger, C.; Ashery, U.; Spillantini, M. G.

10.1101/500629 — neuroscience — Posted on 2018-12-19

825 Analysis of whole genome-transcriptomic organization in brain to identify genes associated with alcoholism

Kapoor, M.; Wang, J.-C.; Farris, S. P.; Liu, Y.; McClintick, J.; Gupta, I.; Meyers, J. L.; Bertelsen, S.; Chao, M.; Nurnberger, J.; Tischfield, J.; Harari, O.; Zeran, L.; Hesselbroc, V.; Bauer, L.; Raj, T.; Porjesz, B.; Agrawal, A.; Foroud, T.; Edenberg, H.; Mayfield, R. D.; Goate, A.

10.1101/500439 — neuroscience — Posted on 2018-12-19

826 Single-copy Knock-In Loci for Defined Gene Expression in C. elegans

Silva-Garcia, C. G.; Heintz, C.; Dutta, S.; Clark, N. M.; Lanjuin, A.; Mair, W. B.

10.1101/500892 — genetics — Posted on 2018-12-19

827 Lasagna: Multifaceted Protein-Protein Interaction Prediction Based on Siamese Residual RCNN

Chen, M.; Ju, C. J.-T.; Zhou, G.; Zhang, T.; Chen, X.; Chang, K.-W.; Zaniolo, C.; Wang, W.

10.1101/501791 — bioinformatics — Posted on 2018-12-19

828 PrimPol is required for the maintenance of efficient nuclear and mitochondrial DNA replication in human cells

Bailey, L.; Bianchi, J.; Doherty, A.

10.1101/501304 — genetics — Posted on 2018-12-19

829 A global view of pleiotropy and genetic architecture in complex traits

Watanabe, K.; Stringer, S.; Frei, O.; Umicevic Mirkov, M.; Polderman, T. J. C.; van der Sluis, S.; Andreassen, O. A.; Neale, B. M.; Posthuma, D.

10.1101/500090 — genetics — Posted on 2018-12-19

830 A simple new approach to variable selection in regression, with application to genetic fine-mapping

Wang, G.; Sarkar, A. K.; Carbonetto, P.; Stephens, M.

10.1101/501114 — bioinformatics — Posted on 2018-12-19

831 Fast and accurate differential transcript usage by testing equivalence class counts

Cmero, M.; Davidson, N.; Oshlack, A.

10.1101/501106 — bioinformatics — Posted on 2018-12-19

832 High-flow Nano-chromatography Columns Facilitate Rapid and High-quality Proteome Analysis on Standard Nano-LC Hardware

Hughes, C. S.; Adomat, H.; LeBihan, S.; Collins, C.; Sorensen, P.; Morin, G. B.

10.1101/501908 — biochemistry — Posted on 2018-12-19

833 Non-CG methylation and multiple epigenetic layers associate child abuse with immune and small GTPase dysregulation

Lutz, P.-E.; Chay, M.-A.; Pacis, A.; Chen, G. G.; Aouabed, Z.; Maffioletti, E.; Theroux, J.-F.; Grenier, J.-C.; Yang, J.; Aguirre, M.; Ernst, C.; Redensek, A.; van Kempen, L. C.; Yalcin, I.; Kwan, T.; Mechawar, N.; Pastinen, T.; Turecki, G.

10.1101/501239 — neuroscience — Posted on 2018-12-19

834 Injection of antibodies against immunodominant epitopes tunes germinal centres to generate broadly neutralizing antibodies

Meyer-Hermann, M.

10.1101/501247 — immunology — Posted on 2018-12-19

835 Functional and evolutionary impact of polymorphic inversions in the human genome

Giner-Delgado, C.; Villatoro, S.; Lerga-Jaso, J.; Gaya-Vidal, M.; Oliva, M.; Castellano, D.; Pantano, L.; Bitarello, B.; Izquierdo, D.; Noguera, I.; Olalde, I.; Delprat, A.; Blancher, A.; Lalueza-Fox, C.; Esko, T.; O'Reilly, P.; Andres, A.; Ferretti, L.; Puig, M.; Caceres, M.

10.1101/501981 — genomics — Posted on 2018-12-19

836 Profiling gene expression of the host response to a Plasmodium vivax irradiated sporozoite immunization and infectious challenge

Rojas-Pena, M. C.; Arafat, D. C.; Velasquez, J. M.; Garimalla, S. C.; Arevalo-Herrera, M.; Herrera, S.; Gibson, G.

10.1101/501957 — genomics — Posted on 2018-12-19

837 Tarantula phylogenomics: A robust phylogeny of multiple tarantula lineages inferred from transcriptome data sheds light on the prickly issue of urticating setae evolution

Foley, S.; Lueddecke, T.; Chen, D.-Q.; Krehenwinkel, H.; Kuenzel, S.; Longhorn, S.; Wendt, I.; von Wirth, V.; Taenzler, R.; Vences, M.; Piel, W.

10.1101/501262 — evolutionary biology — Posted on 2018-12-19

838 Nucleotide Archival Format (NAF) enables efficient lossless reference-free compression of DNA sequences

Kryukov, K.; Takahashi Ueda, M.; Nakagawa, S.; Imanishi, T.

10.1101/501130 — bioinformatics — Posted on 2018-12-19

839 Different molecular signatures in lung cancer types from integrative bioinformatic analyses of RNASeq data

Lucchetta, M.; da Piedade, I.; Mounir, M.; Marina Vabistsevits, M.; Terklsen, T.; Papaleo, E.

10.1101/501569 — bioinformatics — Posted on 2018-12-19

840 pVACtools: a computational toolkit to select and visualize cancer neoantigens

Hundal, J.; Kiwala, S.; McMichael, J.; Miller, C. A.; Wollam, A. T.; Xia, H.; Liu, C. J.; Zhao, S.; Feng, Y.-Y.; Graubert, A. P.; Wollam, A. Z.; Neichin, J.; Neveau, M.; Walker, J.; Gillanders, W. E.; Mardis, E. R.; Griffith, O. L.; Griffith, M.

10.1101/501817 — bioinformatics — Posted on 2018-12-19

841 Mechanistic insights of the attenuation of quorum-sensing-dependent virulence factors of Pseudomonas aeruginosa: Molecular modeling of the interaction of taxifolin with transcriptional regulator LasR

Grabski, H.; Tiratsuyan, S.

10.1101/500157 — bioinformatics — Posted on 2018-12-19

842 Cortical patterning of abnormal morphometric similarity in psychosis is associated with brain expression of schizophrenia related genes

10.1101/501494 — neuroscience — Posted on 2018-12-19

843 Activation of neuromodulatory axon projections in primary visual cortex during periods of locomotion and pupil dilation

Larsen, R. S.; Turschak, E.; Daigle, T.; Zeng, H.; Zhuang, J.; Waters, J.

10.1101/502013 — neuroscience — Posted on 2018-12-19

844 Assembly of functionally antagonistic visual circuits for controlling pupil dynamics

Dhande, O. S.; Seabrook, T. A.; Phan, A. H.; Salaly, L. D.; Ishiko, N.; Nguyen, P. L.; Wang, J. T.; Evans, S. M.; Huberman, A. D.

10.1101/500868 — neuroscience — Posted on 2018-12-19

845 Motivation and Cognitive Control in Depression

Grahek, I.; Shenhav, A.; Musslick, S.; Krebs, R. M.; Koster, E. H. W.

10.1101/500561 — neuroscience — Posted on 2018-12-19

846 Constraints upon cheating emergence in mutualistic networks: evidence in the mycorrhizal symbiosis

Perez-Lamarque, B.; Selosse, M.-A.; Opik, M.; Morlon, H.; Martos, F.

10.1101/500504 — evolutionary biology — Posted on 2018-12-19

847 Soil respiration in a tropical montane grassland ecosystem is largely heterotroph-driven and increases under simulated warming

Tiruvaimozhi, Y. V.; Sankaran, M. V.

10.1101/501155 — ecology — Posted on 2018-12-19

848 Incomplete annotation of OMIM genes is likely to be limiting the diagnostic yield of genetic testing, particularly for neurogenetic disorders

Zhang, D.; Guelfi, S.; Ruiz, S. G.; Costa, B.; Reynolds, R. H.; D'Sa, K.; Liu, W.; Courtin, T.; Peterson, A.; Jaffe, A. E.; Hardy, J.; Botia, J.; Collado-Torres, L.; Ryten, M.

10.1101/499103 — bioinformatics — Posted on 2018-12-19

849 CRUP: A comprehensive framework to predict condition-specific regulatory units

Ramisch, A.; Heinrich, V.; Glaser, L. V.; Fuchs, A.; Yang, X.; Benner, P.; Schoepflin, R.; Li, N.; Kinkley, S.; Hillmann, A.; Longinotto, J.; Heyne, S.; Czepukojc, B.; Kessler, S. M.; Kiemer, A. K.; Cadenas, C.; Arrigoni, L.; Gasparoni, N.; Manke, T.; Pap, T.; Pospisilik, A.; Hengstler, J.; Walter, J.; Meijsing, S. H.; Chung, H.-R.; Vingron, M.

10.1101/501601 — bioinformatics — Posted on 2018-12-19

850 Fast Objective Coupled Planar Illumination Microscopy

Greer, C. J.; Holy, T. E.

10.1101/501890 — bioengineering — Posted on 2018-12-19

851 Oxytocin facilitates self-serving rather than altruistic tendencies in competitive social interactions via orbitofrontal cortex

Xu, X.; Liu, C.; Zhou, X.; Chen, Y.; Gao, Z.; Zhou, F.; Kou, J.; Becker, B.; Kendrick, K.

10.1101/501171 — neuroscience — Posted on 2018-12-19

852 Taking advantage of external mechanical work to reduce metabolic cost: the mechanics and energetics of split-belt treadmill walking

Sanchez, N.; Simha, S.; Donelan, J. M.; Finley, J. M.

10.1101/500835 — neuroscience — Posted on 2018-12-19

853 Drivers of human gut microbial community assembly: Coadaptation, determinism and stochasticity

Oliphant, K.; Parreira, V. R.; Cochrane, K.; Allen-Vercoe, E.

10.1101/501940 — microbiology — Posted on 2018-12-19

854 Proteomic Analyses of Morphological Variants of Borrelia burgdorferi Shed New Light on Persistence Mechanisms: Implications for Pathogenesis, Diagnosis and Treatment

Feng, J.; Zhang, Y.

10.1101/501080 — microbiology — Posted on 2018-12-19

855 Antidepressant treatment modulates the gut microbiome and metabolome during pregnancy and lactation in rats with a depressive-like phenotype

Ramsteijn, A. S.; Jasarevic, E.; Houwing, D. J.; Bale, T. L.; Olivier, J. D.

10.1101/501742 — microbiology — Posted on 2018-12-19

856 Cyclin A triggers Mitosis either via Greatwall or Cyclin B

Hegarat, N.; Crncec, A.; Suarez Peredo Rodriguez, M. F.; Echegaray Iturra, F.; Gu, Y.; Lang, P. F.; Barr, A. R.; Bakal, C.; Kanemaki, M. T.; Lamond, A. I.; Novak, B.; Ly, T.; Hochegger, H.

10.1101/501684 — cell biology — Posted on 2018-12-19

857 Moments reconstruction and local dynamic range compression of high order Superresolution Optical Fluctuation Imaging

Yi, X.; Son, S.; Ando, R.; Miyawaki, A.; Weiss, S.

10.1101/500819 — bioengineering — Posted on 2018-12-19

858 Analysis of small RNA silencing in Zymoseptoria tritici - wheat interactions

Kettles, G. J.; Hofinger, B. J.; Hu, P.; Bayon, C.; Rudd, J. J.; Balmer, D.; Courbot, M.; Hammond-Kosack, K. E.; Scalliet, G.; Kanyuka, K.

10.1101/501650 — plant biology — Posted on 2018-12-19

859 Evidence for implicit and adaptive deployment of precision weighting during passive listening: a simultaneous EEG/MEG study

Lecaignard, F.; Bertrand, O.; Caclin, A.; Mattout, J.

10.1101/501221 — neuroscience — Posted on 2018-12-19

860 M1 disruption delays motor processes but not deliberation about action choices

Derosiere, G.; Thura, D.; Cisek, P.; Duque, J.

10.1101/501205 — neuroscience — Posted on 2018-12-19

861 Causal inference in the multisensory brain

Cao, Y.; Summerfield, C.; Park, H.; Giordano, B. L.; Kayser, C.

10.1101/500413 — neuroscience — Posted on 2018-12-19

862 Decreased metabolism and increased tolerability to extreme environment in Staphylococcus warneri with long-term space flight

Bai, P.; Zhang, B.; Zhao, X.; Li, D.; Yu, Y.; Zhang, X.; Huang, B.; Liu, C.

10.1101/501163 — microbiology — Posted on 2018-12-19

863 3DeFDR: Identifying cell type-specific looping interactions with empirical false discovery rate guided thresholding

Fernandez, L. R.; Gilgenast, T. G.; Phillips-Cremins, J. E.

10.1101/501056 — genomics — Posted on 2018-12-19

864 Evolution of sperm competition: Natural variation and genetic determinants of Caenorhabditis elegans sperm size

Gimond, C.; Vielle, A.; Silva Soares, N.; Zdraljevic, S.; McGrath, P.; Andersen, E.; Braendle, C.

10.1101/501486 — evolutionary biology — Posted on 2018-12-19

865 Measurement of junctional tension in epithelial cells at the onset of primitive streak formation in the chick embryo via non-destructive optical manipulation

Ferro, V.; Chuai, M.; McGloin, D.; Weijer, C.

10.1101/501775 — developmental biology — Posted on 2018-12-19

866 Myosin driven Actin Filament Sliding is Responsible for Endoplasmic Reticulum and Golgi Movement

McKenna, J. F.; Webb, S. E. D.; Kriechbaumer, V.; Hawes, C.

10.1101/347187 — cell biology — Posted on 2018-12-19

867 MicroRNA-deficient embryonic stem cells acquire a functional Interferon response

Witteveldt, J.; Knol, L. I.; Macias, S.

10.1101/501254 — cell biology — Posted on 2018-12-19

868 Neuromusculoskeletal simulation reveals abnormal rectus femoris-gluteus medius reflex coupling in post-stroke gait

Akbas, T.; Sulzer, J.; Neptune, R.

10.1101/501072 — bioengineering — Posted on 2018-12-19

869 Structural analysis of phosphorylation-associated interactions of MCC to Scribble PDZ domains

Caria, S.; Stewart, B. Z.; Humbert, P. O.; Kvansakul, M.

10.1101/501064 — biochemistry — Posted on 2018-12-19

870 Computational Causal Modeling of the Dynamic Biomarker Cascade in Alzheimer’s Disease

Petrella, J. R.; Hao, W.; Rao, A.; Doraiswamy, P. M.; Alzheimer's Disease Computational Modeling Initiative,

10.1101/313353 — neuroscience — Posted on 2018-12-19

871 Microglia are necessary for toxin-mediated demyelination and activation of microglia is sufficient to induce demyelination

Marzan, D. E.; West, B. L.; Salzer, J. L.

10.1101/501148 — neuroscience — Posted on 2018-12-19

872 Integrated Likelihood for Phylogenomics under a No-Common-Mechanism Model

Tidwell, H.; Nakhleh, L.

10.1101/500520 — evolutionary biology — Posted on 2018-12-19

873 Fitness of reciprocal F1 hybrids between Rhinanthus minor and Rhinanthus major under controlled conditions and in the field

Wesselingh, R. A.; Horcicova, S.; Mirzaei, K.

10.1101/500454 — evolutionary biology — Posted on 2018-12-19

874 A computational platform for high-throughput analysis of RNA sequences and modifications by mass spectrometry

Wein, S.; Andrews, B.; Sachsenberg, T.; Santos-Rosa, H.; Kohlbacher, O.; Kouzarides, T.; Garcia, B. A.; Weisser, H.

10.1101/501668 — bioinformatics — Posted on 2018-12-19

875 A novel rationale for targeting FXI: Insights from the hemostastic miRNA targetome for emerging anticoagulant strategies

Nourse, J.; Danckwardt, S.

10.1101/501676 — pharmacology and toxicology — Posted on 2018-12-19

876 Learning of pathogenic bacteria in adult C. elegans bidirectionally regulates pathogen response in the progeny

Pereira, A.; Zhang, Y.

10.1101/500264 — neuroscience — Posted on 2018-12-19

877 Reduced Salience and Enhanced Central Executive Connectivity Following PTSD Treatment

Abdallah, C.; Averill, C.; Ramage, A.; Averill, L.; Alkin, E.; Krystal, J.; Roache, J.; Resick, P.; Young-McCaughan, S.; Peterson, A.; Fox, P.

10.1101/501973 — neuroscience — Posted on 2018-12-19

878 The impact of learning on perceptual decisions and its implication for speed-accuracy tradeoffs

Mendonca, A. G.; Drugowitsch, J.; Vicente, M. I.; DeWitt, E.; Pouget, A.; Mainen, Z. F.

10.1101/501858 — neuroscience — Posted on 2018-12-19

879 Selective peak inference: Unbiased estimation of raw and standardized effect size at local maxima

Davenport, S. J.; Nichols, T. E.

10.1101/500512 — neuroscience — Posted on 2018-12-19

880 Spike-Diffuse-Spike Modelling of AxonalPropagation Links Demyelination to CompoundAction Potential Dispersion

Naud, R.; Longtin, A.

10.1101/501379 — neuroscience — Posted on 2018-12-19

881 Girls’ attentive traits associate with cerebellar to dorsal attention and default mode network connectivity

Rohr, C. S.; Dimond, D.; Schuetze, M.; Cho, I. Y. K.; Lichtenstein-Vidne, L.; Okon-Singer, H.; Dewey, D. M.; Bray, S. L.

10.1101/499574 — neuroscience — Posted on 2018-12-19

882 G-Dash: A Genome Dashboard Integrating Modeling and Informatics

Li, Z.; Sun, R.; Bishop, T. C.

10.1101/501874 — genomics — Posted on 2018-12-19

883 Metal-induced abnormalities in diatom girdle bands

Olenici, A.; Blanco, S.; Borrego-Ramos, M.; Jimenez-Gomez, F.; Guerrero, F.; Momeu, L.; Baciu, C.

10.1101/501619 — ecology — Posted on 2018-12-19

884 Diversification of retinoblastoma protein function associated with cis and trans adaptations

Mouawad, R.; Prasad, J.; Thorley, D.; Himadewi, P.; Kadiyala, D.; Wilson, N.; Kapranov, P.; Arnosti, D.

10.1101/501866 — developmental biology — Posted on 2018-12-19

885 Using high-resolution annotation of insect mitochondrial DNA to decipher tandem repeats in the control region

Haishuo, J.; Xiaofeng, X.; Xiufeng, J.; Zhi, C.; Hong, j.; Guangyuan, L.; Qiang, Z.; Ze, C.; Wenjun, B.; Shan, G.

10.1101/500330 — bioinformatics — Posted on 2018-12-19

886 DR-SIP: Protocols for Higher Order Structure Modeling with Distance Restraints- and Cyclic Symmetry-Imposed Packing

Chan, J.; Zou, J.; Chien, C.-H. C.; Pan, R.-L.; Yang, L.-W.

10.1101/500397 — bioinformatics — Posted on 2018-12-19

887 iCn3D, a Web-based 3D Viewer for the Visualization of Biomolecular Structure and Sequence Annotation

Wang, J.; Youkharibache, P.; Zhang, D.; Lanczycki, C. J.; Geer, R. C.; Madej, T.; Phan, L.; Ward, M.; Lu, S.; Marchler, G. H.; Wang, Y.; Bryant, S. H.; Geer, L. Y.; Marchler-Bauer, A.

10.1101/501692 — bioinformatics — Posted on 2018-12-19

888 OncodriveCLUSTL: a sequence-based clustering method to identify cancerdrivers

Arnedo-Pac, C.; Mularoni, L.; Muinos, F.; Gonzalez-Perez, A.; Lopez-Bigas, N.

10.1101/500132 — bioinformatics — Posted on 2018-12-19

889 Tracking dynamic changes in Alzheimer’s disease brain proteome reveals ageing-independent damage in Drosophila

Scholes, H. M.; Cryar, A.; Kerr, F.; Sutherland, D.; Gethings, L. A.; Vissers, J. P. C.; Partridge, L.; Lees, J. G.; Orengo, C. A.; Thalassinos, K.

10.1101/501213 — biochemistry — Posted on 2018-12-19

890 Introducing THOR, a model microbiome for genetic dissection of community behavior

Lozano, G. L.; Bravo, J. I.; Garavito Diago, M. F.; Park, H. B.; Hurley, A.; Peterson, S. B.; Stabb, E. V.; Crawford, J. M.; Broderick, N. A.; Handelsman, J.

10.1101/499715 — microbiology — Posted on 2018-12-19

891 Use of F2 bulks in training sets for genomic prediction of combining ability and hybrid performance

Technow, F.

10.1101/501916 — genetics — Posted on 2018-12-19

892 Response to a Synthetic Pheromone Source by OX4319L, a Self-Limiting Diamondback Moth (Lepidoptera: Plutellidae) Strain, and Field Dispersal Characteristics of Its Progenitor Strain

Bolton, M.; Collins, H. L.; Chapman, T.; Morrison, N. I.; Long, S. J.; Linn, C. E.; Shelton, A. M.

10.1101/501924 — zoology — Posted on 2018-12-19

893 De-Novo-Designed Translational Repressors for Multi-Input Cellular Logic

Kim, J.; Zhou, Y.; Carlson, P.; Teichmann, M.; Simmel, F. C.; Silver, P. A.; Collins, J. J.; Lucks, J. B.; Yin, P.; Green, A. A.

10.1101/501783 — synthetic biology — Posted on 2018-12-19

894 SBOL-OWL: An ontological approach for formal and semantic representation of synthetic genetic circuits

Misirli, G.; Taylor, R.; Goni-Moreno, A.; McLaughlin, J. A.; Myers, C.; Gennari, J. H.; Lord, P.; Wipat, A.

10.1101/499970 — synthetic biology — Posted on 2018-12-19

895 Estimation of Pharmacokinetic Parameters of Continuous Intravenous Flucloxacillin infusion in the Outpatient Settings (PKFLUCLOX)

Lwin, N.; Liu, Z.; Loewenthal, M.; Dobson, P.; Yoo, J. W.; Galettis, P.; Lai, K.; Martin, J.

10.1101/499848 — pharmacology and toxicology — Posted on 2018-12-19

896 Domains of the TF protein important in regulating its own palmitoylation

Ramsey, J.; Chavez, M.; Mukhopadhyay, S.

10.1101/500272 — molecular biology — Posted on 2018-12-19

897 The integrated stress response mediates type I interferon driven necrosis in Mycobacterium tuberculosis granulomas

Bhattacharya, B.; Xiao, S.; Chatterjee, S.; Urbanowski, M.; Ordonez, A.; Ihms, E. A.; Agrahari, G.; Lun, S.; Berland, R.; Pichugin, A.; Gao, Y.; Connor, J.; Ivanov, A.; Yan, B.-S.; Kobzik, L.; Jain, S.; Bishai, W.; Kramnik, I.

10.1101/499467 — immunology — Posted on 2018-12-19

898 Functional evaluation of transposable elements as transcriptional enhancers in mouse embryonic and trophoblast stem cells

Todd, C. D.; Deniz, O.; Branco, M. R.

10.1101/500322 — genetics — Posted on 2018-12-19

899 Comparative RNAi Screens in Isogenic Human Stem Cells Reveal SMARCA4 as a Differential Regulator

Günes, C.; Paszkowski-Rogacz, M.; Rahmig, S.; Khattak, S.; Wermke, M.; Dahl, A.; Bornhäuser, M.; Waskow, C.; Buchholz, F.

10.1101/500181 — molecular biology — Posted on 2018-12-19

900 Bacterial analogs of plant piperidine alkaloids mediate microbial interactions in a rhizosphere model system

Lozano, G. L.; Park, H. B.; Bravo, J. I.; Armstrong, E. A.; Denu, J. M.; Stabb, E. V.; Broderick, N. A.; Crawford, J. M.; Handelsman, J.

10.1101/499731 — microbiology — Posted on 2018-12-19

901 Genome-wide association meta-analysis identifies novel GP2 gene risk variants for pancreatic cancer in the Japanese population

Lin, Y.; Nakatochi, M.; Ito, H.; Kamatani, Y.; Inoko, A.; Sakamoto, H.; Kinoshita, F.; Kobayashi, Y.; Ishii, H.; Ozaka, M.; Sasaki, T.; Matsuyama, M.; Sasahira, N.; Morimoto, M.; Kobayashi, S.; Fukushima, T.; Ueno, M.; Ohkawa, S.; Egawa, N.; Kuruma, S.; Mori, M.; Nakao, H.; Adachi, Y.; Okuda, M.; Osaki, T.; Kamiya, S.; Wang, C.; Hara, K.; Shimizu, Y.; Miyamoto, T.; Hayashi, Y.; Hosono, Y.; Ebi, H.; Kohmoto, T.; Imoto, I.; Murakami, Y.; Akiyama, M.; Ishigaki, K.; Matsuda, K.; Hirata, M.; Shimada, K.; Okusaka, T.; Kawaguchi, T.; Takahashi, M.; Watanabe, Y.; Kuriki, K.; Kadota, A.; Wakai, K.; Yam

10.1101/498659 — genetics — Posted on 2018-12-19

902 Effect of riverscape and exotic introgression on the genetic structure and local adaptation of the endangered Mexican golden trout (Oncorhynchus chrysogaster)

Escalante, M. A.; Perrier, C.; Garcia de Leon, F. J.; Ruiz Luna, A.; Ortega Abboud, E.; Manel, S.

10.1101/500041 — evolutionary biology — Posted on 2018-12-19

903 FERARI: a novel tether involved in endocytic recycling

Solinger, J. A.; Raschid, H.-O.; Spang, A.

10.1101/500082 — cell biology — Posted on 2018-12-19

904 Improved Representation of Sequence Bloom Trees

Harris, R. S.; Medvedev, P.

10.1101/501452 — bioinformatics — Posted on 2018-12-19

905 De novo Design of Translational RNA Repressors

Carlson, P. D.; Glasscock, C. J.; Lucks, J. B.

10.1101/501767 — synthetic biology — Posted on 2018-12-19

906 The making of a Lewy body: the role of alpha-synuclein post-fibrillization modifications in regulating the formation and the maturation of pathological inclusions.

Mahul-Mellier, A.-L.; Altay, F.; Burtscher, J.; Maharjan, N.; Ait Bouziad, N.; Chiki, A.; Vingill, S.; Wade-Martins, R.; Holton, J.; Strand, C.; Haikal, C.; Li, J.-y.; Hamelin, R.; Croisier, M.; Knott, G.; Mairet-Coello, G.; Weerens, L.; Michel, A.; Downey, P.; Citron, M.; Lashuel, H. A.

10.1101/500058 — neuroscience — Posted on 2018-12-19

907 A computational approach for characterizing the structural basis of intrinsic coupling modes of the cerebral cortex

Messe, A.; Meinert, L. J.; Hollensteiner, K. J.; Delettre, C.; Dell, L.-A.; Pieper, F.; Larrat, B.; Meriaux, S.; Mangin, J.-F.; Reillo, I.; de Juan Romero, C.; Borrell, V.; Toro, R.; Engler, G.; Engel, A. K.; Hilgetag, C. C.

10.1101/500009 — neuroscience — Posted on 2018-12-19

908 Corticostriatal oscillations predict high vs. low drinkers in a preclinical model of limited access alcohol consumption

Henricks, A. M.; Dwiel, L. L.; Deveau, N. H.; Simon, A. A.; Ruiz-Jaquez, M. J.; Green, A. I.; Doucette, W. T.

10.1101/293597 — neuroscience — Posted on 2018-12-19

909 Sharing cells with Wolbachia: the transovarian vertical transmission of Culex pipiens densovirus

Altinli, M.; Soms, J.; Ravallec, M.; Justy, F.; Bonneau, M.; Weill, M.; Gosselin-Grenet, A.-S.; Sicard, M.

10.1101/500173 — microbiology — Posted on 2018-12-19

910 Pandoravirus celtis illustrates the microevolution processes at work in the giant Pandoraviridae genomes

LEGENDRE, M.; ALEMPIC, J.-M.; PHILIPPE, N.; LARTIGUE, A.; JEUDY, S.; POIROT, O.; TA, N. T.; NIN, S.; COUTE, Y.; ABERGEL, C.; CLAVERIE, J.-M.

10.1101/500207 — evolutionary biology — Posted on 2018-12-19

911 Nanobody Detection of Standard Fluorescent Proteins Enables Multi-Target DNA-PAINT with High Resolution and Minimal Displacement Errors

Sograte-Idrissi, S.; Oleksiievets, N.; Isbaner, S.; Eggert-Martinez, M.; Enderlein, J.; Tsukanov, R.; Opazo, F.

10.1101/500298 — cell biology — Posted on 2018-12-19

912 SimNIBS 2.1: A Comprehensive Pipeline for Individualized Electric Field Modelling for Transcranial Brain Stimulation

Saturnino, G. B.; Puonti, O.; Nielsen, J. D.; Antonenko, D.; Madsen, K. H. H.; Thielscher, A.

10.1101/500314 — bioengineering — Posted on 2018-12-19

913 Intravital optoacoustic ultrasound bio-microscopy reveals radiation-induced skull vasculopathy

Estrada, H.; Rebling, J.; Sievert, W.; Hladik, D.; Hofmann, U.; Gottschalk, S.; Tapio, S.; Multhoff, G.; Razansky, D.

10.1101/500017 — bioengineering — Posted on 2018-12-19

914 State-dependent geometry of population activity in rat auditory cortex

Kobak, D.; Pardo-Vazquez, J. L.; Valente, M.; Machens, C.; Renart, A.

10.1101/501338 — neuroscience — Posted on 2018-12-19

915 Genome-wide association study of diabetic kidney disease highlights biology involved in renal basement membrane collagen

Salem, R.; Todd, J. N.; Sandholm, N.; Cole, J. B.; Chen, W.-M.; Andrews, D.; Pezzolesi, M. G.; MCKEIGUE, P. M.; Hiraki, L. T.; Qiu, C.; Nair, V.; Liao, C. D.; Cao, J. J.; Valo, E.; Onengut-Gumuscu, S.; Smiles, A. M.; MCGURNAGHAN, S.; Haukka, J. K.; Harjutsalo, V.; Brennan, E. P.; van Zuydam, N.; Ahlqvist, E.; Doyle, R.; Ahluwalia, T. S.; Lajer, M.; Hughes, M. F.; Park, J.; Skupien, J.; Spiliopoulou, A.; Liu, A.; Menon, R.; Boustany-Kari, C. M.; Kang, H. M.; Nelson, R. G.; Klein, R.; Klein, B. E.; Lee, K. E.; Gao, X.; Mauer, M.; Maeastroni, S.; Caramori, M. L.; de Boer, I. H.; Miller, R. G.; Gu

10.1101/499616 — genetics — Posted on 2018-12-19

916 Incentive and dopamine sensitization produced by intermittent but not long access cocaine self-administration

Kawa, A. B.; Valenta, A. C.; Kennedy, R. T.; Robinson, T. E.

10.1101/499475 — neuroscience — Posted on 2018-12-19

917 Perception of frequency modulation is mediated by cochlear place coding

Whiteford, K. L.; Kreft, H. A.; Oxenham, A. J.

10.1101/497248 — neuroscience — Posted on 2018-12-19

918 Emergence of an Australian-like pstS-null vancomycin resistant Enterococcus faecium clone in Scotland

Lemonidis, K.; Salih, T. S.; Dancer, S. J.; Hunter, I. S.; Tucker, N. P.

10.1101/236786 — microbiology — Posted on 2018-12-19

919 TREM2 R47H exacerbates immune response in Alzheimer’s disease brain

Korvatska, O.; Kiianitsa, K.; Ratushny, A.; Matsushita, M.; Chien, W.-M.; Dorschner, M. O.; Keene, C. D.; Bammler, T. K.; Bird, T. D.; Raskind, W. H.

10.1101/499319 — genetics — Posted on 2018-12-19

920 Unusual physiological properties of two ganglion cell types in primate retina

Rhoades, C. E.; Shah, N. P.; Manookin, M. B.; Brackbill, N.; Kling, A.; Goetz, G.; Sher, A.; Litke, A. M.; Chichilnisky, E. J.

10.1101/496455 — neuroscience — Posted on 2018-12-19

921 Augmin-mediated amplification of long-lived spindle microtubules directs plus-ends to kinetochores

David, A. F.; Roudot, P.; Legant, W. R.; Betzig, E.; Danuser, G.; Gerlich, D. W.

10.1101/501445 — cell biology — Posted on 2018-12-19

922 A combinatorial postsynaptic molecular mechanism converts patterns of nerve impulses into the behavioral repertoire

Kopanitsa, M. V.; van de Lagemaat, L.; Afinowi, N. O.; Strathdee, D. J.; Strathdee, K. E.; Fricker, D. G.; Tuck, E. J.; Elsegood, K. A.; Croning, M. D. R.; Komiyama, N. H.; Grant, S. G. N.

10.1101/500447 — neuroscience — Posted on 2018-12-19

923 Sustaining attention for a prolonged period of time increases temporal variability in cortical responses

Reteig, L. C.; van den Brink, R. L.; Prinssen, S.; Cohen, M. X.; Slagter, H. A.

10.1101/501544 — neuroscience — Posted on 2018-12-19

924 The C-terminal Helix 9 motif regulates cannabinoid receptor type 1 trafficking and surface expression

Fletcher-Jones, A.; Hildick, K. L.; Evans, A. J.; Nakamura, Y.; Wilkinson, K.; Henley, J. M.

10.1101/501528 — neuroscience — Posted on 2018-12-19

925 Immunomodulatory activity of Ganoderma lucidum immunomodulatory protein via PI3K/Akt and MAPK signaling pathways in macrophage RAW264.7 cells

Zhou, X.; Li, Q.; Chang, Y.; Li, L.-D.-J.; Du, X.; Bai, X.; He, Z.-M.; Chen, L.

10.1101/499871 — immunology — Posted on 2018-12-19

926 Neuronal activity in the posterior cingulate cortex signals environmental information and predicts behavioral variability during routine foraging

Barack, D. L.; Platt, M. L.

10.1101/499814 — neuroscience — Posted on 2018-12-19

927 In vitro activity of the new β-lactamase inhibitors relebactam and vaborbactam in combination with β-lactams against Mycobacterium abscessus complex clinical isolates

Kaushik, A.; Ammerman, N. C.; Lee, J.; Martins, O.; Kreiswirth, B. N.; Lamichhane, G.; Parrish, N. M.; Nuermberger, E.

10.1101/499830 — microbiology — Posted on 2018-12-19

928 Antibody-mediated immobilization of virions in mucus

Jensen, M.; Wang, Y.-Y.; Lai, S.; Forest, M. G.; McKinley, S. A.

10.1101/500538 — immunology — Posted on 2018-12-19

929 Asexual reproduction drives the reduction of transposable element load

Bast, J.; Jaron, K.; Schuseil, D.; Roze, D.; Schwander, T.

10.1101/501361 — evolutionary biology — Posted on 2018-12-19

930 Updating the in silico human surfaceome with meta-ensemble learning and feature engineering

Bojar, D.

10.1101/499780 — bioinformatics — Posted on 2018-12-19

931 A common deliberative process underlies model-based planning and patient intertemporal choice

Hunter, L. E.; Bornstein, A. M.; Hartley, C. A.

10.1101/499707 — animal behavior and cognition — Posted on 2018-12-19

932 On-site ribosome remodeling by locally synthesized ribosomal proteins in axons

Shigeoka, T.; Koppers, M.; Wong, H. H.-W.; Lin, J. Q.; Dwivedy, A.; Nascimento, J. d. F.; Cagnetta, R.; van Tartwijk, F.; Strohl, F.; Cioni, J.-M.; Carrington, M.; Kaminski, C. F.; Harris, W. A.; Jung, H.; Holt, C. E.

10.1101/500033 — neuroscience — Posted on 2018-12-19

933 Boosting learning efficacy with non-invasive brain stimulation in intact and brain-damaged humans

Herpich, F.; Melnick, M. D.; Agosta, S.; Huxlin, K.; Tadin, D.; BATTELLI, L.

10.1101/500215 — neuroscience — Posted on 2018-12-19

934 Selective neuronal vulnerability in Alzheimer’s disease: a network-based analysis

Roussarie, J.-P.; Yao, V.; Plautz, Z.; Kasturia, S.; Albornoz, C.; Schmidt, E. F.; Brichta, L.; Barnea-Cramer, A.; Heintz, N.; Hof, P.; Heiman, M.; Flajolet, M.; Troyanskaya, O.; Greengard, P.

10.1101/499897 — neuroscience — Posted on 2018-12-19

935 SGK phosphorylates Cdc25 and Myt1 to trigger cyclin B-Cdk1 activation at the meiotic G2/M transition

Hiraoka, D.; Hosoda, E.; Chiba, K.; Kishimoto, T.

10.1101/499640 — molecular biology — Posted on 2018-12-19

936 miR-216b-5p is Down-Regulated in Human Breast Cancer and Inhibits Proliferation and Progression by Targeting HDAC8 Oncogene

Menbari, M.-N.; Rahimi, K.; Ahmadi, A.; Mohammadi-Yeganeh, S.; Elyasi, A.; Darvishi, N.; Hosseini, V.; Abdi, M.

10.1101/499905 — cancer biology — Posted on 2018-12-19

937 SCeQTL: an R package for identifying eQTL from single-cell parallel sequencing data

Hu, Y.; Zhang, X.

10.1101/499863 — bioinformatics — Posted on 2018-12-19

938 Continuous in vivo metabolism by NMR

Judge, M. T.; Wu, Y.; Tayyari, F.; Hattori, A.; Glushka, J.; Ito, T.; Arnold, J.; Edison, A. S.

10.1101/501577 — systems biology — Posted on 2018-12-19

939 Hepatic JARID1a ablation disrupts the transcription adaptation to feeding and alters systemic metabolism

DiTacchio, K. A.; Kalinowska, D.; Saran, A. R.; Byrne, A.; Vollmers, C.; DiTacchio, L.

10.1101/499566 — physiology — Posted on 2018-12-19

940 The Relation between Alpha/Beta Oscillations and the Encoding of Sentence induced Contextual Information

Terporten, R.; Schoffelen, J.-M.; Dai, B.; Hagoort, P.; Koesem, A.

10.1101/501437 — neuroscience — Posted on 2018-12-19

941 A counterselectable sucrose sensitivity marker permits efficient and flexible mutagenesis in Streptococcus agalactiae

Hooven, T. A.; Bonakdar, M.; Chamby, A. B.; Ratner, A. J.

10.1101/499822 — microbiology — Posted on 2018-12-19

942 Effect of KNL1 on the proliferation and apoptosis of colorectal cancer cells

Bai, T.; Liu, Y.; Li, B.

10.1101/499889 — cancer biology — Posted on 2018-12-19

943 gencore: an efficient tool to generate consensus reads for error suppressing and duplicate removing of NGS data

Chen, S.; Zhou, Y.; Chen, Y.; Huang, T.; Liao, W.; Xu, Y.; Liu, Z.; Gu, J.

10.1101/501502 — bioinformatics — Posted on 2018-12-19

944 Massively Parallel FPGA Hardware for Spike-By-Spike Networks

Rotermund, D.; Pawelzik, K. R.

10.1101/500280 — bioinformatics — Posted on 2018-12-19

945 Synaptic combinatorial molecular mechanisms generate repertoires of innate and learned behavior

Komiyama, N. H.; van de Lagemaat, L.; Stanford, L. E.; Pettit, C. M.; Strathdee, D. H.; Strathdee, K. E.; Fricker, D.; Tuck, E. J.; Elsegood, K. A.; Ryan, T. J.; Nithianantharajah, J.; Skene, N. G.; Croning, M. D. R.; Grant, S. G. N.

10.1101/500389 — neuroscience — Posted on 2018-12-19

946 Using ribosome profiling to quantify differences in protein expression: a case study in Saccharomyces cerevisiae oxidative stress conditions

Blevins, W. R.; Tavella, T.; Moro, S. G.; Blasco-Moreno, B.; Closa-Mosquera, A.; Diez, J.; Carey, L. B.; Alba, M. M.

10.1101/501478 — genomics — Posted on 2018-12-19

947 A Constant Proportion in Protein Structure

Lobo-Cabrera, F. J.

10.1101/500025 — biophysics — Posted on 2018-12-19

948 Structures of the Catalytically Activated Yeast Spliceosome Reveal the Mechanism of Branching

Wan, R.; Bai, R.; Yan, C.; Lei, J.; Shi, Y.

10.1101/500363 — biophysics — Posted on 2018-12-19

949 Structural Modeling of Gamma-Secretase Aβn ComplexFormation and Substrate Processing

Hitzenberger, M.; Zacharias, M.

10.1101/500488 — biophysics — Posted on 2018-12-19

950 LEDGF and HDGF2 relieve the nucleosome-induced barrier to transcription

LeRoy, G.; Oksuz, O.; Descostes, N.; Aoi, Y.; Ganai, R.; Ortabozkoyun, H.; Yu, J.-R.; Lee, C.-H.; Stafford, J.; Shilatifard, A.; Reinberg, D.

10.1101/500926 — molecular biology — Posted on 2018-12-19

951 The Landscape Of Circular RNA Expression In The Human Brain

Gokoolparsadh, A.; Anwar, F.; Voineagu, I.

10.1101/500991 — genomics — Posted on 2018-12-19

952 The mechanism of cross-talk between histone H2B ubiquitination and H3 methylation by Dot1L

Worden, E. J.; Hoffmann, N.; Hicks, C.; Wolberger, C.

10.1101/501098 — biochemistry — Posted on 2018-12-19

953 Incipient species or social polymorphism? Diversity in the desert ant Cataglyphis

Reiner Brodetzki, T.; Inbar, S.; Cohen, P.; Aron, S.; Privman, E.; Hefetz, A.

10.1101/501270 — evolutionary biology — Posted on 2018-12-19

954 Lipopolysaccharide (LPS) induces increased epidermal green autofluorescence of mouse

Li, Y.; Zhang, M.; Tao, Y.; Ying, W.

10.1101/501189 — biophysics — Posted on 2018-12-19

955 Hybridizing wood ants allow testing for natural selection at candidate barrier loci underlying speciation

Kulmuni, J.; Nouhaud, P.; Pluckrose, L.; Satokangas, I.; Dhaygude, K.; Butlin, R. K.

10.1101/500116 — evolutionary biology — Posted on 2018-12-19

956 Establishing Cerebral Organoids as Models of Human-Specific Brain Evolution

Pollen, A. A.; Bhaduri, A.; Andrews, M. G.; Nowakowski, T. J.; Meyerson, O. S.; Mostajo-Radji, M. A.; Di Lullo, E.; Alvarado, B.; Bedolli, M.; Dougherty, M. L.; Fiddes, I. T.; Kronenberg, Z. N.; Shuga, J.; Leyrat, A. A.; West, J. A.; Bershteyn, M.; Lowe, C. B.; Pavolvic, B. J.; Salama, S. R.; Haussler, D.; Eichler, E.; Kriegstein, A. A.

10.1101/500934 — developmental biology — Posted on 2018-12-19

957 Effect of Compound Kushen Injection, a natural compound mixture, and its identified chemical components on migration and invasion of colon, brain and breast cancer cell lines

Nourmohammadi, S.; Aung, T. N.; Cui, J.; Pei, J. V.; De Ieso, M. L.; Harata-Lee, Y.; Qu, Z.; Adelson, D. L.; Yool, A. J.

10.1101/500124 — cancer biology — Posted on 2018-12-19

958 Implementation of an antibody characterization process: Application to the major ALS/FTD disease gene C9ORF72

Laflamme, C.; McKeever, P.; Kumar, R.; Schwartz, J.; Chen, C. X.- Q.; You, Z.; Xiao, S.; Benaliouad, F.; Gileadi, O.; McBride, H. M.; Durcan, T. M.; Edwards, A.; Robertson, J.; McPherson, P.

10.1101/499350 — molecular biology — Posted on 2018-12-19

959 Timed inhibition of CDC7 increases CRISPR-Cas9 mediated templated repair

Wienert, B.; Feng, S. J.; Locke, M.; Nguyen, D. N.; Wyman, S. K.; Kazane, K. R.; MARSON, A.; Richardson, C. D.; Corn, J. E.

10.1101/500462 — molecular biology — Posted on 2018-12-19

960 Parallel genomic evolution of parasite tolerance in wild honey bee populations

Bozek, K.; Rangel, J.; Arora, J.; Tin, M.; Crotteau, E.; Loper, G.; Fewell, J.; Mikheyev, A.

10.1101/498436 — evolutionary biology — Posted on 2018-12-19

961 Substrate inhibition imposes fitness penalty at high protein stability

Adkar, B. V.; Bhattacharyya, S.; Gilson, A. I.; Zhang, W.; Shakhnovich, E. I.

10.1101/499962 — biophysics — Posted on 2018-12-19

962 QTL mapping of leaf angle on eight nodes in maize enable the optimize canopy by differential operating of leaf angle at different levels of plant

Tang, D.; Chen, Z.; JIang, Q.; Ni, J.; Li, P.; Wang, L.; Zhou, J.; Li, C.; Liu, J.

10.1101/499665 — plant biology — Posted on 2018-12-19

963 Invasive DNA elements modify nuclear architecture by KNOT-Linked Silencing in plants

Grob, S.; Grossniklaus, U.

10.1101/500496 — genomics — Posted on 2018-12-19

964 A High-Quality De Novo Genome Assembly from a Single Mosquito using PacBio Sequencing

Kingan, S.; Heaton, H.; Cudini, J.; Lambert, C.; Baybayan, P.; Galvin, B.; Durbin, R.; Korlach, J.; Lawniczak, M.

10.1101/499954 — genomics — Posted on 2018-12-19

965 Genome wide association analysis uncovers variants for reproductive variation across dog breeds and links to domestication

Smith, S. P.; Phillips, J. B.; Johnson, M. L.; Abbot, P.; Capra, J. A.; Rokas, A.

10.1101/285791 — evolutionary biology — Posted on 2018-12-19

966 Engineered orthogonal quorum sensing systems for synthetic gene regulation

Tekel, S. J.; Smith, C. L.; Lopez, B.; Mani, A.; Connot, C.; Livingstone, X.; Haynes, K.

10.1101/499681 — synthetic biology — Posted on 2018-12-19

967 A Nanopore-based method for generating complete coding region sequences of dengue virus in resource-limited settings

Stubbs, S.; Blacklaws, B.; Yohan, B.; Yudhaputri, F. A.; Schwem, B.; Salvana, E. M.; Destura, R. V.; Myint, K. S.; Sasmono, R. T.; Frost, S. D.

10.1101/499111 — microbiology — Posted on 2018-12-19

968 Adaptation of Acinetobacter baumannii to colistin exposure: Laboratory mimicking of a clinical case

Oralkan, E.; Keske, S.; Ergonul, O.; Can, F.

10.1101/493221 — microbiology — Posted on 2018-12-19

969 Ageing affects DNA methylation drift and transcriptional cell-to-cell variability in muscle stem cells

Hernando-Herraez, I.; Evano, B.; Stubbs, T.; Commere, P.-H.; Clark, S.; Andrews, S.; Tajbakhsh, S.; Reik, W.

10.1101/500900 — genomics — Posted on 2018-12-19

970 Inhibition Of Nitric Oxide Synthesis By Dexamethasone Increases Survival Rate In Plasmodium berghei-Infected Mice

Moreira, D. R.; Uberti, A. C. M.; Gomes, A. R. Q.; Ferreira, M. E. S.; Santos, R. S.; Green, M. D.; Vieira, J. R. d. S.; Dolabela, M. F.; Percario, S.

10.1101/497966 — microbiology — Posted on 2018-12-19

971 Transcription factor TAp73 and microRNA-449 complement each other to support multiciliogenesis

Wildung, M.; Esser, T. U.; Grausam, K. B.; Wiedwald, C.; Volceanov-Hahn, L.; Riedel, D.; Beuermann, S.; Li, L.; Zylla, J. L. S.; Guenther, A.-K.; Wienken, M.; Ercetin, E.; Han, Z.; Bremmer, F.; Shomroni, O.; Andreas, S.; Zhao, H.; Lize, M.

10.1101/273375 — cell biology — Posted on 2018-12-19

972 MAGI: A method for metabolite, annotation, and gene integration

Erbilgin, O.; Ruebel, O.; Louie, K. B.; Trinh, M.; de Raad, M.; Wildish, T.; Udwary, D. W.; Hoover, C. A.; Deutsch, S.; Northen, T. R.; Bowen, B. P.

10.1101/204362 — bioinformatics — Posted on 2018-12-19

973 Signals from the brood modulate the sleep of brood tending bumblebee workers

Nagari, M.; Gera, A.; Jonsson, S.; Bloch, G.

10.1101/500744 — animal behavior and cognition — Posted on 2018-12-19

974 Hybrid Automata Library: A modular platform for efficient hybrid modeling with real-time visualization

Bravo, R. R.; Baratchart, E.; West, J.; Schenck, R. O.; Miller, A.; Gallaher, J.; Gatenbee, C. D.; Basanta, D.; Robertson-Tessi, M.; Anderson, A. R. A.

10.1101/411538 — cancer biology — Posted on 2018-12-19

975 Application of clinical genomic sequencing among Chinese advanced cancer patients to guide precision medicine decisions

Jiao, S.; Bai, Y.; Dai, C.; Xu, X.; Cai, X.; Wang, G.; Wei, J.; Wu, B.; Sun, W.; Xu, Q.

10.1101/367854 — cancer biology — Posted on 2018-12-19

976 Binning microbial genomes using deep learning

Nissen, J. N.; Sonderby, C. K.; Armenteros, J. J. A.; Groenbech, C. H.; Nielsen, H. B.; Petersen, T. N.; Winther, O.; Rasmussen, S.

10.1101/490078 — bioinformatics — Posted on 2018-12-19

977 Macrophage migration inhibitory factor (MIF) of Syrian golden hamster (Mesocricetus auratus) has similar structure and function as human MIF and promotes pancreatic tumor growth in vivo

Dash, P.; Sundaram, R.; Suresh, V.; Sabat, S. C.; Mohapatra, D.; Mohanty, S.; Vasudevan, D.; Senapati, S.

10.1101/449629 — biochemistry — Posted on 2018-12-19

978 Whole-Cortex Mapping of Common Genetic Influences on Depression and Social Deficits

Hatoum, A. S.; Reineberg, A. E.; Smolker, H. R.; Hewitt, J. K.; Friedman, N. P.

10.1101/500827 — neuroscience — Posted on 2018-12-18

979 Snapshot: clustering and visualizing epigenetic history during cell differentiation

Xiang, G.; Giardine, B.; An, L.; Sun, C.; Keller, C.; Heuston, E.; Bodine, D.; Hardison, R.; Zhang, Y.

10.1101/291880 — bioinformatics — Posted on 2018-12-19

980 Functional characterization of Arabidopsis ARGONAUTE 3 in reproductive tissue

Jullien, P. E.; Grob, S.; Marchais, A.; Pumplin, N.; Chevalier, C.; Otto, C.; Schott, G.; Voinnet, O.

10.1101/500769 — plant biology — Posted on 2018-12-18

981 Neuronal Mechanisms of Strategic Cooperation

Ong, W. S.; Madlon-Kay, S.; Platt, M. L.

10.1101/500850 — neuroscience — Posted on 2018-12-18

982 Generation of Transgenic Human Malaria Parasites With Strong Fluorescence in the Transmission Stages

McLean, K. J.; Straimer, J.; Hopp, C. S.; Vega-Rodriguez, J.; Tripathi, A.; Mlambo, G.; Doumolin, P. C.; Harris, C. T.; Tong, X.; Shears, M. J.; Ankarklev, J.; Kafsack, B.; Fidock, D. A.; Sinnis, P.

10.1101/500793 — microbiology — Posted on 2018-12-18

983 Human Gene Expression Variability and its Dependence on Methylation and Aging

Bashkeel, N.; Perkins, T.; Kaern, M.; Lee, J.

10.1101/500785 — bioinformatics — Posted on 2018-12-18

984 Image Quality Causes Substantial Bias in Three-Dimensional Speckle-Tracking Echocardiography Measures

Al Saikhan, L.; Park, C.; Hughes, A.

10.1101/500777 — physiology — Posted on 2018-12-18

985 Farnesyl Transferase Inhibition for the Treatment of Tauopathies

Hernandez, I.; Luna, G.; Rauch, J. N.; Giroux, M.; Karch, C. M.; Boctor, D.; Storm, N. J.; Diaz, A.; Zekanowski, C.; Kang, A. A.; Hinman, C.; Cerovac, V.; Guzman, E.; Zhou, H.; Goate, A.; Fisher, S. K.; Cuervo, A. M.; Kosik, K. S.

10.1101/500801 — neuroscience — Posted on 2018-12-18

986 G-OnRamp: A Galaxy-based platform for creating genome browsers for collaborative genome annotation

Liu, Y.; Sargent, L.; Leung, W.; Elgin, S. C. R.; Goecks, J.

10.1101/499558 — genomics — Posted on 2018-12-18

987 Nanoporous Boron Nitride for High Efficient Water Desalination

Gu, Z.; Liu, S.; Dai, X.; Chen, S.; Yang, Z.; Zhou, R.

10.1101/500876 — biophysics — Posted on 2018-12-18

988 A Deep Learning Genome-Mining Strategy Improves Biosynthetic Gene Cluster Prediction

Hannigan, G. D.; Prihoda, D.; Palicka, A.; Soukup, J.; Klempir, O.; Rampula, L.; Durcak, J.; Wurst, M.; Kotowski, J.; Chang, D.; Wang, R.; Piizzi, G.; Hazuda, D. J.; Woelk, C. H.; Bitton, D. A.

10.1101/500694 — bioinformatics — Posted on 2018-12-18

989 Acquisition of visual priors and induced hallucinations in chronic schizophrenia

Valton, V.; Karvelis, P.; Richards, K. L.; Seitz, A. R.; Lawrie, S. M.; Series, P.

10.1101/498568 — neuroscience — Posted on 2018-12-18

990 Successful exome capture and sequencing in lemurs using human baits

Webster, T. H.; Guevara, E. E.; Lawler, R. R.; Bradley, B. J.

10.1101/490839 — genomics — Posted on 2018-12-18

991 Zebrafish DANA retroposon can form large zebrafish sequence in human Hepg2 and 293T cell lines

Cao, Z.; Xu, P.; Bing, X.; Ding, W.; Qiang, J.

10.1101/493155 — cell biology — Posted on 2018-12-18

992 Model Annotation and Discovery with the Physiome Model Repository

Sarwar, D. M.; Kalbasi, R.; Gennari, J. H.; Carlson, B. E.; Neal, M. L.; Bono, B. d.; Atalag, K.; Hunter, P. J.; Nickerson, D. P.

10.1101/498501 — bioinformatics — Posted on 2018-12-18

993 Predicting circRNA-RBP interaction sites using a codon-based encoding and hybrid deep neural networks

Zhang, K.; Pan, X.; Yang, Y.; Shen, H.-B.

10.1101/499012 — bioinformatics — Posted on 2018-12-18

994 iScore: A novel graph kernel-based function for scoring protein-protein docking models

Geng, C.; Jung, Y.; Renaud, N.; Honavar, V.; Bonvin, A. M. J. J.; Xue, L. C.

10.1101/498584 — bioinformatics — Posted on 2018-12-18

995 Spatial and Temporal Influences on Discrimination of Vibrotactile Stimuli on The Arm

Shah, V. A.; Casadio, M.; Scheidt, R. A.; Mrotek, L.

10.1101/497552 — neuroscience — Posted on 2018-12-18

996 Iso-propyl stilbene: A life-cycle signal?

Hapeshi, A.; Benarroch, J. M.; Clarke, D. J.; Waterfield, N. R.

10.1101/498857 — microbiology — Posted on 2018-12-18

997 Integrative analysis with expanded DNA methylation data reveals common key regulators and pathways in cancers

Fan, S.; Tang, J.; Li, N.; Zhao, Y.; Ai, R.; Zhang, K.; Wang, M.; Du, W.; Wang, W.

10.1101/491845 — bioinformatics — Posted on 2018-12-18

998 Developmental regulators FlbE/D orchestrate the polarity site-to-nucleus dynamics of the fungal bZIP FlbB

Otamendi, A.; Perez de Nanclares Arregui, E.; Oiartzabal, E.; Cortese, M. S.; Espeso, E. A.; Etxebeste, O.

10.1101/467563 — developmental biology — Posted on 2018-12-18

999 Quenching an active swarm: Effect of light exposure on collective motility in swarming Serratia marcescens colonies

Patteson, A. E.; Yang, J.; Arratia, P.; Gopinath, A.

10.1101/331801 — biophysics — Posted on 2018-12-18

1000 Target immunity levels for achieving and maintaining measles elimination

Funk, S.; Knapp, J. K.; Lebo, E.; Reef, S. E.; Dabbagh, A. J.; Kretsinger, K.; Jit, M.; Edmunds, W. J.; Strebel, P. M.

10.1101/201574 — epidemiology — Posted on 2018-12-18

1001 Distance-based Protein Folding Powered by Deep Learning

Xu, J.

10.1101/465955 — bioinformatics — Posted on 2018-12-18

1002 Target immunity levels for achieving and maintaining measles elimination

Funk, S.; Knapp, J. K.; Lebo, E.; Reef, S. E.; Dabbagh, A. J.; Kretsinger, K.; Jit, M.; Edmunds, W. J.; Strebel, P. M.

10.1101/201574 — epidemiology — Posted on 2018-12-18

1003 Uncertainty in RNA-seq gene expression data

Arora, S.; Pattwell, S. S.; Holland, E. C.; Bolouri, H.

10.1101/445601 — bioinformatics — Posted on 2018-12-18

1004 A novel virulence phenotype rapidly assesses Candida fungal pathogenesis in healthy and immunocompromised Caenorhabditis elegans hosts

Feistel, D. J.; Elmostafa, R.; Nguyen, N.; Penley, M.; Morran, L.; Hickman, M. A.

10.1101/370403 — microbiology — Posted on 2018-12-18

1005 Novel, economically important semi-dwarf and early mutants: Selection and development from Improved White Ponni Rice (Oryza sativa L.)

Ramchander, S.; Leon, A. P.; Yasin, J. K.; KK, V.; Pillai, A.

10.1101/500637 — plant biology — Posted on 2018-12-18

1006 Excitable dynamics of NREM sleep: a unifying model for neocortex and hippocampus

Levenstein, D.; Buzsaki, G.; Rinzel, J.

10.1101/312587 — neuroscience — Posted on 2018-12-18

1007 Experimentally induced pain does not influence updating of peripersonal space and body representations following tool-use

Vitterso, A. D.; Halicka, M.; Buckingham, G.; Proulx, M. J.; Wilson, M.; Bultitude, J. H.

10.1101/500587 — neuroscience — Posted on 2018-12-18

1008 Knowledge, attitudes and practices regarding rabies and its control among dog owners in Kigali city, Rwanda

Ntampaka, P.; Nyaga, P. N.; Gathumbi, J. K.; Tukei, M.; Niragire, F.

10.1101/500595 — microbiology — Posted on 2018-12-18

1009 Impact of branching on the conformational heterogeneity of the lipopolysaccharide from Klebsiella pneumoniae: Implications for vaccine design

Aytenfisu, A.; Simon, R.; MacKerell, A.

10.1101/500645 — biophysics — Posted on 2018-12-18

1010 Hypoxic Training Increases the Concentration of Serum Irisin and Reduces Weight in Diet-induced Obese Rats

li, z.; weng, x.; Zhao, F.; Song, X.; Lin, W.

10.1101/500603 — biochemistry — Posted on 2018-12-18

1011 The presence and impact of reference bias on population genomic studies of prehistoric human populations

Günther, T.; Nettelblad, C.

10.1101/487983 — genomics — Posted on 2018-12-18

1012 Reliable variant calling during runtime of Illumina sequencing

Loka, T. P.; Tausch, S. H.; Renard, B. Y.

10.1101/387662 — bioinformatics — Posted on 2018-12-18

1013 The Germline Variants rs61757955 and rs34988193 are Predictive of Survival in Low Grade Glioma Patients

Chatrath, A.; Kiran, M.; Kumar, P.; Ratan, A.; Dutta, A.

10.1101/497354 — cancer biology — Posted on 2018-12-18

1014 Competitive balance in the big five European leagues based on Shannon entropy

Zhao, Y.; Zhang, H.

10.1101/499178 — scientific communication and education — Posted on 2018-12-18

1015 NetPyNE: a tool for data-driven multiscale modeling of brain circuits

Dura-Bernal, S.; Suter, B.; Gleeson, P.; Cantarelli, M.; Quintana, A.; Rodriguez, F.; Kedziora, D. J.; Chadderdon, G. L.; Kerr, C. C.; Neymotin, S. A.; McDougal, R.; Hines, M.; Shepherd, G. M.; Lytton, W. W.

10.1101/461137 — neuroscience — Posted on 2018-12-18

1016 High-dimensional characterization of IL-10 production and IL-10 dependent regulation during primary gammaherpesvirus infection

Kimball, A. K.; Oko, L. M.; Kaspar, R. E.; van Dyk, L. F.; Clambey, E. T.

10.1101/490789 — immunology — Posted on 2018-12-18

1017 chroGPS2: differential analysis of epigenome maps in R.

Reina, O.; Azorin, F.; Stephan-Otto Attolini, C.

10.1101/425892 — bioinformatics — Posted on 2018-12-18

1018 Inner hair cell and neuron degeneration contribute to hearing loss in a DFNA2-like mouse model

Carignano, C.; Barila, E. P.; Rias, E. I.; Dionisio, L.; Aztiria, E.; Spitzmaul, G.

10.1101/469676 — neuroscience — Posted on 2018-12-18

1019 A non-Lamarckian model for the inheritance of the epigenetically-coded phenotypic characteristics: a new paradigm for Genetics, Genomics and, above all, Ageing studies

Marsellach, X.

10.1101/492280 — genetics — Posted on 2018-12-18

1020 Pervasive and diverse collateral sensitivity profiles inform optimal strategies to limit antibiotic resistance

Maltas, J.; Wood, K. B.

10.1101/241075 — evolutionary biology — Posted on 2018-12-18

1021 Beyond a single patch: local and regional processes explain biodiversity patterns in a seagrass epifaunal metacommunity

Stark, K. A.; Thompson, P. L.; Yakimishyn, J.; Lee, L.; O'Connor, M. I.

10.1101/482406 — ecology — Posted on 2018-12-18

1022 Highly Predictive Transdiagnostic Features Shared across Schizophrenia, Bipolar Disorder, and ADHD Identified Using a Machine Learning Based Approach

Liu, Y.; Mellem, M. S.; Gonzalez, H.; Kollada, M.; Mahableshwarkar, A. R.; Madrid, A.; Martin, W. J.; Ahammad, P.

10.1101/453951 — neuroscience — Posted on 2018-12-18

1023 Tracking genetic invasions: genome-wide SNPs reveal the source of pyrethroid-resistant Aedes aegypti (yellow fever mosquito) incursions at international ports

Schmidt, T.; van Rooyen, A. R.; Chung, J.; Endersby-Harshman, N. M.; Griffin, P. C.; Sly, A.; Hoffmann, A. A.; Weeks, A. R.

10.1101/490714 — genomics — Posted on 2018-12-18

1024 FishNET: An automated relational database for zebrafish colony management.

Cantu Gutierrez, A.; Cantu Gutierrez, M.; Rhyner, A. M.; Ruiz, O.; Eisenhoffer, G. T.; Wythe, J. D.

10.1101/494971 — genetics — Posted on 2018-12-18

1025 PathwayMatcher: proteoform-centric network construction enables fine-granularity multi-omics pathway mapping

Hernandez Sanchez, L. F.; Burger, B.; Horro, C.; Fabregat, A.; Johansson, S.; Njolstad, P. R.; Barsnes, H.; Hermjakob, H.; Vaudel, M.

10.1101/375097 — bioinformatics — Posted on 2018-12-18

1026 Can machine learning assess trunk alignment directly from raw video using a depth camera?

Sanchez, M. B.; Cunningham, R.; Butler, P. B.; Loram, I.

10.1101/421172 — bioengineering — Posted on 2018-12-18

1027 Hepatic γ-Amino Butyric Acid Release Drives Hyperinsulinemia and Insulin Resistance

Geisler, C. E.; Ghimire, S.; Hepler, C.; Higgins, M. R.; Fregosi, R. F.; Renquist, B. J.

10.1101/475608 — physiology — Posted on 2018-12-18

1028 Extended hopanoid loss reduces bacterial motility and surface attachment and leads to heterogeneity in root nodule kinetics in a Bradyrhizobium-Aeschynomene symbiosis

Belin, B. J.; Tookmanian, E. T.; de Anda, J.; Wong, G.; Newman, D. K.

10.1101/423301 — microbiology — Posted on 2018-12-18

1029 A requirement for neutrophil glycosaminoglycans in chemokine:receptor interactions is revealed by the streptococcal protease SpyCEP

Goldblatt, J.; Lawrenson, R. A.; Muir, L.; Dattani, S.; Tsuchiya, T.; Kanegasaki, S.; Sriskandan, S.; Pease, J. E.

10.1101/461418 — immunology — Posted on 2018-12-18

1030 Asthma-Neoplasms Relationships: New Insights Using Machine Inference, Epidemiological Reasoning, And Big Data

Shojaee, A.; Gomez Villalobos, J.; Wang, X.; Kaminski, N.; Siner, J.; takyar, s.; Zhao, H.; Chupp, G.

10.1101/439117 — epidemiology — Posted on 2018-12-18

1031 Hybrid Automata Library: A modular platform for efficient hybrid modeling with real-time visualization

Bravo, R. R.; Baratchart, E.; West, J.; Schenck, R. O.; Miller, A.; Gallaher, J.; Gatenbee, C. D.; Basanta, D.; Robertson-Tessi, M.; Anderson, A. R. A.

10.1101/411538 — cancer biology — Posted on 2018-12-18

1032 Incentive salience attribution, sensation-seeking and novelty-seeking are independent traits in a large sample of male and female heterogeneous stock rats

Hughson, A. R.; Horvath, A. P.; Holl, K.; Palmer, A. A.; Solberg Woods, L. C.; Robinson, T. E.; Flagel, S. B.

10.1101/421065 — animal behavior and cognition — Posted on 2018-12-18

1033 A simple, robust, and low-cost method to produce the PURE cell-free system

Lavickova, B.; Maerkl, S. J.

10.1101/420570 — synthetic biology — Posted on 2018-12-18

1034 Baloxavir Marboxil Susceptibility of Influenza Viruses from the Asia-Pacific, 2012-2018.

Koszalka, P.; Tilmanis, D.; Roe, M.; Vijaykrishna, D.; Hurt, A.

10.1101/498766 — microbiology — Posted on 2018-12-18

1035 Systematically improved in vitro culture conditions reveal new insights into the reproductive biology of the human parasite Schistosoma mansoni

Wang, J.; Chen, R.; Collins, J.

10.1101/411397 — microbiology — Posted on 2018-12-18

1036 Efficient and specific Ly6G+ cell depletion: A change in the current practices toward more relevant functional analyses of neutrophils

Faget, J.; Boivin, G.; Ancey, P.-B.; Gkasti, A.; Mussard, J.; Engblom, C.; Pfirschke, C.; Vazquez, J.; Bendriss-Vermare, N.; Caux, C.; Vozenin, M.-C.; Pittet, M. J.; Gunzer, M.; Meylan, E.

10.1101/498881 — immunology — Posted on 2018-12-18

1037 The joint evolution of lifespan and self-fertilisation

Lesaffre, T.; Billiard, S.

10.1101/420877 — evolutionary biology — Posted on 2018-12-18

1038 Body mass index trajectories preceding first report of poor self-rated health: a longitudinal case-control analysis of the English Longitudinal Study of Ageing

Hulman, A.; Ibsen, D. B.; Laursen, A. S. D.; Dahm, C. C.

10.1101/405563 — epidemiology — Posted on 2018-12-18

1039 NeatSeq-Flow: A Lightweight High Throughput Sequencing Workflow Platform for Non-Programmers and Programmers alike

Sklarz, M. Y.; Levin, L.; Gordon, M.; Chalifa-Caspi, V.

10.1101/173005 — bioinformatics — Posted on 2018-12-18

1040 Reference Repulsion Is Not a Perceptual Illusion

Fritsche, M.; de Lange, F. P.

10.1101/366393 — neuroscience — Posted on 2018-12-18

1041 Chronic in vivo optogenetic stimulation modulates neuronal excitability, spine morphology and Hebbian plasticity in the mouse hippocampus

Moulin, T. C.; Petiz, L. L.; Rayee, D.; Maia, R. G.; Winne, J.; Lima da Cruz, R. V.; Amaral, O. B.; Leao, R. N.

10.1101/320507 — neuroscience — Posted on 2018-12-18

1042 Spatial organization of Clostridium difficile S-layer biogenesis

Oatley, P.; Kirk, J. A.; Ma, S.; Jones, S.; Fagan, R. P.

10.1101/405993 — microbiology — Posted on 2018-12-18

1043 Psychoactive plant- and mushroom-associated alkaloids from two behavior modifying cicada pathogens

Boyce, G.; Gluck-Thaler, E.; Slot, J. C.; Stajich, J. E.; Davis, W. J.; James, T. Y.; Cooley, J. R.; Panaccione, D. G.; Eilenberg, J.; De Fine Licht, H. H.; Macias, A. M.; Berger, M. C.; Wickert, K. L.; Stauder, C. M.; Spahr, E. J.; Maust, M. D.; Metheny, A. M.; Simon, C.; Kritsky, G.; Hodge, K. T.; Humber, R. A.; Gullion, T.; Short, D. P. G.; Kijimoto, T.; Mozgai, D.; Arguedas, N.; Kasson, M. T.

10.1101/375105 — ecology — Posted on 2018-12-18

1044 Respiration-phased switching between sensory inputs and top-down inputs in the olfactory cortex

Narikiyo, K.; Manabe, H.; Yoshihara, Y.; Mori, K.

10.1101/499749 — neuroscience — Posted on 2018-12-18

1045 Antigen receptor control of methionine metabolism in T cells

Sinclair, L. V.; Howden, A. J.; Brenes-Murillo, A. J.; Spinelli, L.; Hukelmann, J. L.; Macintyre, A. N.; Liu, X.; Thomson, S.; Taylor, P. M.; Rathmell, J. C.; Locasale, J. W.; Lamond, A. I.; Cantrell, D. A.

10.1101/499095 — immunology — Posted on 2018-12-18

1046 Differential cell fates of muscle stem cells are accompanied by symmetric segregation of canonical H3 histones in vivo

Evano, B.; Le Carrou, G.; Almouzni, G.; Tajbakhsh, S.

10.1101/499913 — cell biology — Posted on 2018-12-18

1047 Physical Principles of Retroviral Integration in the Human Genome

Michieletto, D.; Lusic, M.; Marenduzzo, D.; Orlandini, E.

10.1101/247437 — biophysics — Posted on 2018-12-18

1048 Differential adaptation to visual motion allows robust encoding of optic flow in the dragonfly

Evans, B. J. E.; O'Carroll, D. C.; Fabian, J. M.; Wiederman, S. D.

10.1101/496588 — neuroscience — Posted on 2018-12-18

1049 Frequency-tagging visual background information enables multi-target perceptual filling-in to be distinguished from phenomenally matched replay

Davidson, M. J.; Graafsma, I.; Tsuchiya, N.; van Boxtel, J. J. A.

10.1101/499517 — neuroscience — Posted on 2018-12-18

1050 Environmental DNA metabarcoding as an effective and rapid tool for fish monitoring in canals

McDevitt, A. D.; Guimaraes Sales, N.; Browett, S. S.; Sparnenn, A.; Mariani, S.; Wangensteen, O. S.; Coscia, I.; Benvenuto, C.

10.1101/498451 — ecology — Posted on 2018-12-18

1051 TorC2 dependent phosphorylation modulates calcium regulation of fission yeast myosin.

Baker, K. B.; Gyamfi, I. A.; Mashanov, G. I.; Molloy, J. E.; Geeves, M. A.; Mulvihill, D. P.

10.1101/498865 — cell biology — Posted on 2018-12-18

1052 A non-parametric method to compute protein-protein and protein-ligands interfaces. Application to HIV-2 protease-inhibitors complexes

Laville, P.; Martin, J.; Launay, G.; Regad, L.; Camproux, A.-C.; de Vries, S.; Petitjean, M.

10.1101/498923 — bioinformatics — Posted on 2018-12-18

1053 Dynamic ensemble of HIV-1 RRE stem IIB reveals non-native conformations that disrupt the Rev binding site

Chu, C.-C.; Plangger, R.; Kreutz, C.; Al-Hashimi, H. M.

10.1101/498907 — biochemistry — Posted on 2018-12-18

1054 A mathematical model of flow-mediated coagulation identifies factor V as a modifier of thrombin generation in hemophilia A

Link, K. G.; Stobb, M. T.; Sorrells, M. G.; Bortot, M.; Ruegg, K.; Manco-Johnson, M. J.; Di Paola, J. A.; Sindi, S. S.; Fogelson, A. L.; Leiderman, K.; Neeves, K. B.

10.1101/495374 — systems biology — Posted on 2018-12-18

1055 BLAST : a short computerized test to measure the ability to stay on task. Normative behavioral data and detailed cortical dynamics.

Petton, M.; Perrone-Bertolotti, M.; Mac-Auliffe, D.; Bertrand, O.; Aguera, P.-E.; Sipp, F.; Batthacharjee, M.; Isnard, J.; Minotti, L.; Rheims, S.; Kahane, P.; Herbillon, V.; Lachaux, J.-P.

10.1101/498691 — neuroscience — Posted on 2018-12-18

1056 Dissociable laminar profiles of concurrent bottom-up and top-down modulation in the human visual cortex

Lawrence, S. J.; Norris, D. G.; de Lange, F.

10.1101/498873 — neuroscience — Posted on 2018-12-18

1057 Consensify: a method for generating pseudohaploid genome sequences from palaeogenomic datasets with reduced error rates

Barlow, A.; Hartmann, S.; Gonzalez, J.; Hofreiter, M.; Paijmans, J. L. A.

10.1101/498915 — genomics — Posted on 2018-12-18

1058 Tensor Decomposition of Stimulated Monocyte and Macrophage Gene Expression Profiles Identifies Neurodegenerative Disease-specific Trans-eQTLs

Ramdhani, S.; Navarro, E.; Udine, E.; Schilder, B. M.; Parks, M.; Raj, T.

10.1101/499509 — genomics — Posted on 2018-12-18

1059 Analysis of the structural variability of topologically associated domains as revealed by Hi-C

Sauerwald, N.; Singhal, A.; Kingsford, C.

10.1101/498972 — genomics — Posted on 2018-12-18

1060 Integrative analysis of Dupuytren’s disease identifies novel risk locus and reveals a shared genetic etiology with BMI

Major, M.; Freund, M. K.; Burch, K. S.; Mancuso, N.; Ng, M.; Furniss, D.; Pasaniuc, B.; Ophoff, R.

10.1101/499368 — genetics — Posted on 2018-12-18

1061 The Tenets of Teneurin: Conserved Mechanisms Regulate Diverse Developmental Processes in the Drosophila Nervous System

DePew, A. T.; Aimino, M. A.; Mosca, T. J.

10.1101/499657 — neuroscience — Posted on 2018-12-18

1062 Artesunate pErk up HepG2 cells to die through apoptosis in vitro

Wong, J. K.; Shi, S. L.; Wang, H.; Xing, F.; Quan, Y.; Wong, K. H.; Wong, A. H.; Deng, C.

10.1101/499723 — cell biology — Posted on 2018-12-18

1063 A metabolic switch from OXPHOS to glycolysis is essential for cardiomyocyte proliferation in the regenerating heart

Honkoop, H.; de Bakker, D.; Aharonov, A.; Kruse, F.; Shakked, A.; Nguyen, P.; de Heus, C.; Garric, L.; Muraro, M.; Shoffner, A.; Tessadori, F.; Peterson, J.; Noort, W.; Posthuma, G.; Grun, D.; van der Laarse, W.; Klumperman, J.; Jaspers, R.; Poss, K.; van Oudenaarden, A.; Tzahor, E.; Bakkers, J.

10.1101/498899 — cell biology — Posted on 2018-12-18

1064 SGK regulates meiotic resumption in ovarian starfish oocytes via intracellular pH-increase and cyclin B-Cdk1 activation

Hosoda, E.; Hiraoka, D.; Hirohashi, N.; Omi, S.; Kishimoto, T.; Chiba, K.

10.1101/499699 — molecular biology — Posted on 2018-12-18

1065 TDP-43 oligomers detected as initial intermediate species during aggregate formation

French, R. L.; Reeb, A. N.; Aligireddy, H.; Kedia, N.; Dhavale, D. D.; Grese, Z. R.; Kotzbauer, P. T.; Bieschke, J.; Ayala, Y. M.

10.1101/499343 — biochemistry — Posted on 2018-12-17

1066 AAV-mediated gene transfer restores a normal muscle transcriptome in a canine model of X-linked myotubular myopathy

Dupont, J.-B.; Guo, J.; Lawlor, M. W.; Grange, R. W.; Gray, J. T.; Buj-Bello, A.; Childers, M. K.; Mack, D. L.

10.1101/499384 — pathology — Posted on 2018-12-17

1067 Microbial contamination in the genome of the domesticated olive

Reiter, T.; Brown, C. T.

10.1101/499541 — genomics — Posted on 2018-12-17

1068 Discovery of Hierarchical Representations for Efficient Planning

Tomov, M.; Yagati, S.; Kumar, A.; Yang, W.; Gershman, S.

10.1101/499418 — neuroscience — Posted on 2018-12-17

1069 In vivo measurements reveal a single 5’ intron is sufficient to increase protein expression level in C. elegans

Crane, M. M.; Sands, B.; Battaglia, C. J.; Johnson, B. J.; Yun, S.; Kaeberlein, M.; Brent, R.; Mendenhall, A.

10.1101/499459 — genetics — Posted on 2018-12-17

1070 Multiple species drive flexible lake food webs with warming

Bartley, T. J.; Tunney, T. D.; Lester, N. P.; Shuter, B. J.; Hanner, R. H.; McCann, K. S.

10.1101/499400 — ecology — Posted on 2018-12-17

1071 Novel mechanisms of bone cancer pain revealed with in vivo GCaMP6s imaging

Kucharczyk, M. W.; Chisholm, K. I.; Lopes, D. M.; Derrien, D.; Denk, F.; Bannister, K.; Dickenson, A. H.; McMahon, S. B.

10.1101/498980 — neuroscience — Posted on 2018-12-17

1072 Functional and Optogenetic Approaches to Discovering Stable Subtype-Specific Circuit Mechanisms in Depression

Grosenick, L.; Shi, T. C.; Gunning, F.; Dubin, M. J.; Downar, J.; Liston, C.

10.1101/498964 — neuroscience — Posted on 2018-12-17

1073 Maintenance of active chromatin states by Hmgn1 and Hmgn2 is required for stem cell identity

Garza-Manero, S.; Sindi, A. A. A.; Mohan, G.; Rehbini, O.; Jeantet, V. H. M.; Bailo, M.; Abdul Latif, F.; West, M.; Gurden, R.; Finlayson, L.; Svambaryte, S.; West, A. G.; West, K.

10.1101/498733 — molecular biology — Posted on 2018-12-17

1074 Species Tree Inference under the Multispecies Coalescent on Data with Paralogs is Accurate

Du, P.; Nakhleh, L.

10.1101/498378 — evolutionary biology — Posted on 2018-12-17

1075 RECONCILING ECOGEOGRAPHICAL RULES: RAINFALL AND TEMPERATURE PREDICT GLOBAL COLOUR VARIATION IN THE LARGEST BIRD RADIATION

Delhey, K.; Dale, J.; Valcu, M.; Kempenaers, B.

10.1101/496463 — evolutionary biology — Posted on 2018-12-17

1076 SOX2 expression identifies Ewing sarcoma patients with high risk for tumor relapse and poor survival

Sannino, G.; Marchetto, A.; Ranft, A.; Jabar, S.; Zacherl, C.; Alba-Rubio, R.; Stein, S.; Wehweck, F. S.; Kiran, M. M.; Hoelting, T. L. B.; Musa, J.; Romero-Perez, L.; Cidre-Aranaz, F.; Knott, M. M. L.; Li, J.; Juergens, H.; Sastre, A.; Alonso, J.; Da Silveira, W.; Hardiman, G.; Gerke, J. S.; Orth, M. F.; Hartmann, W.; Kirchner, T.; Ohmura, S.; Dirksen, U.; Grunewald, T. G. P.

10.1101/498253 — pathology — Posted on 2018-12-17

1077 Highly reproducible 16S sequencing facilitates measurement of host genetic influences on the stickleback gut microbiome

Small, C. M.; Currey, M.; Beck, E. A.; Bassham, S.; Cresko, W. A.

10.1101/497792 — microbiology — Posted on 2018-12-17

1078 Anthropogenic selection along directions of most evolutionary resistance

Renneville, C.; Millot, A.; Agostini, S.; Carmignac, D.; Maugars, G.; Dufour, S.; Le Rouzic, A.; Edeline, E.

10.1101/498683 — evolutionary biology — Posted on 2018-12-17

1079 Real-time detection of circulating tumor cells in living animals using functionalized large gold nanorods

Dutta, R.; Liba, O.; SoRelle, E. D.; Winetraub, Y.; Ramani, V.; Jeffrey, S. S.; Sledge, G. W.; de la Zerda, A.

10.1101/498188 — bioengineering — Posted on 2018-12-17

1080 Mechanistic insights on metabolic dysfunction in PTSD: Role of glucocorticoid receptor sensitivity and energy deficit

Somvanshi, P. R.; Mellon, S. H.; Flory, J. D.; Abu-Amara, D.; Wolkowitz, O. M.; Yehuda, R.; Jett, M.; Marmar, C.; Hood, L.; Wang, K.; Lee, I.; Hammamieh, R.; Gautam, A.; Daigle, B. J.; Yang, R.; Doyle, F. J.

10.1101/492827 — systems biology — Posted on 2018-12-17

1081 Host evolutionary history predicts virus prevalence across bumblebee species

Pascall, D. J.; Tinsley, M. C.; Obbard, D. J.; Wilfert, L.

10.1101/498717 — evolutionary biology — Posted on 2018-12-17

1082 Analysis of multiple fungal sequence repositories highlights shortcomings in microbial databases

Loeffler, C.; Karlsberg, A.; Eskin, E.; Koslicki, D.; Mangul, S.

10.1101/497867 — bioinformatics — Posted on 2018-12-17

1083 Leveraging allelic heterogeneity to increase power of association testing

Hormozdiari, F. I.; Jung, J.; Eskin, E.; Joo, J. W. J.

10.1101/498360 — genetics — Posted on 2018-12-17

1084 Focussing on resistance to front-line drugs is the most effective way to combat the antimicrobial resistance crisis

Perry, M. R.; McClean, D.; Simonet, C.; Woolhouse, M.; McNally, L.

10.1101/498329 — evolutionary biology — Posted on 2018-12-17

1085 High Dimensional Mediation Analysis with Applications to Causal Gene Identification

Zhang, Q.

10.1101/497826 — bioinformatics — Posted on 2018-12-17

1086 A high-throughput fluorescence-based assay for the detection of petroleum hydrocarbon degrading bacteria

French, K. E.; Terry, N.

10.1101/498345 — microbiology — Posted on 2018-12-17

1087 Whole blood transcriptome analysis in bipolar disorder reveals strong lithium effect

Krebs, C. E.; Ori, A. P. S.; Vreeker, A.; Wu, T.; Cantor, R. M.; Boks, M. P.; Kahn, R. S.; Olde Loohuis, L. M.; Ophoff, R. A.

10.1101/497784 — genomics — Posted on 2018-12-17

1088 NASC-seq monitors RNA synthesis in single cells

Hendriks, G.; Jung, L. A.; Larsson, A. J.; Andersson Forsman, O.; Lidschreiber, M.; Lidschreiber, K.; Cramer, P.; Sandberg, R.

10.1101/498667 — genomics — Posted on 2018-12-17

1089 Biased visibility in HiC datasets marks dynamically regulated condensed and decondensed chromatin states genome-wide.

Chandradoss, K. R.; Guthikonda, P. K.; Kethavath, S.; Dass, M.; Singh, H.; Nayak, R.; Kurukuti, S.; Sandhu, K. S.

10.1101/498006 — genomics — Posted on 2018-12-17

1090 Beyond SNP Heritability: Polygenicity and Discoverability of Phenotypes Estimated with a Univariate Gaussian Mixture Model

Holland, D.; Frei, O.; Desikan, R.; Fan, C. C.; Shadrin, A.; Smeland, O.; Sundar, V. S.; Thompson, P.; Andreassen, O. A.; Dale, A. M.

10.1101/498550 — genetics — Posted on 2018-12-17

1091 Separable roles of the DNA damage response kinase Mec1(ATR) and its activator Rad24(RAD17) within the regulation of meiotic recombination

Crawford, M.; Cooper, T. J.; Marsolier-Kergoat, M.-C.; Llorente, B.; Neale, M. J.

10.1101/496182 — genetics — Posted on 2018-12-17

1092 Effects of sampling duration and intervals on confidence in population trend estimates

Wauchope, H. S.; Johnston, A.; Amano, T.; Sutherland, W. J.

10.1101/498170 — ecology — Posted on 2018-12-17

1093 Multinomial modelling of TB/HIV co-infection yields a robust predictive signature and generates hypotheses about the HIV+TB+ disease state.

Duffy, F.; Thompson, E. G.; Scriba, T.; Zak, D.

10.1101/497842 — systems biology — Posted on 2018-12-17

1094 Macronutrients modulate resistance to infection and immunity in Drosophila

Ponton, F.; Morimoto, J.; Robinson, K.; Kumar, S. S.; Cotter, S.; Wilson, K.; Simpson, S. J.

10.1101/498493 — physiology — Posted on 2018-12-17

1095 Detection of a novel mutation G511T in the 530 loop in 16S rRNA in multi drugs resistant Mycobacterium tuberculosis isolated from Sudanese patients

Alfatihy, Y. M.; Idris, A. B.; Hassan, H. G.; Nour, E. O. M.; Elhaj, N. M. A.; El-Zaki, S.-E.; Eldirdery, M. M.; Ali, R. H.; Ibrahim, N. Y.; Elegail, A. M.; Salih, M. A.

10.1101/497628 — microbiology — Posted on 2018-12-17

1096 Reconciling DNA replication and transcription in a hyphal organism: Spatial dynamics of transcription complexes in live Streptomyces coelicolor A3(2)

Nieminen, L.; Hoskisson, P. A.

10.1101/498634 — microbiology — Posted on 2018-12-17

1097 Microhomology-mediated CRISPR/Cas9-based method for genome editing in fission yeast

Hayashi, A.; Tanaka, K.

10.1101/498402 — genetics — Posted on 2018-12-17

1098 Modelling the distribution of Aedes aegypti and Aedes albopictus using climate, host density and interspecies competitive effects

Yang, B.; Borgert, B. A.; Alto, B. W.; Boohene, C. K.; Brabant, P.; Brew, J.; Deutsch, K.; DeValerio, J. T.; Dinglasan, R. R.; Dixon, D.; Faella, J. M.; Fisher-Grainger, S. L.; Glass, G. E.; Hayes, R.; Hoel, D. F.; Horton, A.; Janusauskaite, A.; Kellner, B.; Kraemer, M. U. G.; Leveen, E.; Lucas, K. J.; Medina, J.; Morreale, R.; Petrie, W.; Reiner, R. C.; Riles, M. T.; Salje, H.; Smith, D. L.; Smith, J. P.; Solis, A.; Stuck, J.; Vasquez, C.; Williams, K. F.; Xue, R.-D.; Cummings, D. A. T.

10.1101/498238 — ecology — Posted on 2018-12-17

1099 Identifying A- and P-site locations on ribosome-protected mRNA fragments using Integer Programming

Ahmed, N.; Sormanni, P.; Ciryam, P.; Vendruscolo, M.; Dobson, C. M.; O'Brien, E. P.

10.1101/490755 — bioinformatics — Posted on 2018-12-17

1100 Simphony: simulating large-scale, rhythmic data

Singer, J. M.; Fu, D. Y.; Hughey, J. J.

10.1101/497859 — bioinformatics — Posted on 2018-12-17

1101 Forecasting dengue epidemics using a hybrid methodology

Chakraborty, T.; Chattopadhyay, S.; Ghosh, I.

10.1101/498394 — bioinformatics — Posted on 2018-12-17

1102 Optical Co-registration of MRI and On-scalp MEG

Zetter, R.; Iivanainen, J.; Parkkonen, L.

10.1101/498113 — neuroscience — Posted on 2018-12-17

1103 PRDM9 forms an active trimer mediated by its repetitive zinc finger array

Schwarz, T.; Striedner, Y.; Haase, K.; Kemptner, J.; Zeppezauer, N.; Hermann, P.; Tiemann-Boege, I.

10.1101/498428 — molecular biology — Posted on 2018-12-17

1104 Next-generation sequencing based hospital outbreak investigation yields insight into Klebsiella aerogenes population structure and determinants of carbapenem resistance and virulence

Malek, A.; McGlynn, K.; Taffner, S.; Fine, L.; Tesini, B.; Wang, J.; Mostafa, H. H.; Petry, S.; Perkins, A.; Graman, P.; Hardy, D. J.; Pecora, N. D.

10.1101/497958 — genomics — Posted on 2018-12-17

1105 Rapid evolution of spontaneous mutation increases genetic diversity facilitating plant population survival

Nottebrock, H.; Weng, M.-L.; Rutter, M. T.; Fenster, C. B.

10.1101/497610 — ecology — Posted on 2018-12-17

1106 Differential Expression Analysis of ZIKV Infected Human RNA Sequence Reveals Potential Biomarkers

Jabeen, A.; Ahmad, N.; Raza, K.

10.1101/498295 — bioinformatics — Posted on 2018-12-17

1107 The heparin-binding proteome in normal pancreas and murine experimental acute pancreatitis

Nunes, Q. M.; Su, D.; Brownridge, P. J.; Simpson, D. M.; Sun, C.; Li, Y.; Bui, T. P.; Zhang, X.; Huang, W.; Rigden, D. J.; Beynon, R. J.; Sutton, R.; Fernig, D. G.

10.1101/497271 — biochemistry — Posted on 2018-12-17

1108 Acute effects of systemic inflammation upon neurovascular unit and cerebrovascular function.

Brezzo, G.; Simpson, J.; Ameen-Ali, K. E.; Berwick, J.; Martin, C.

10.1101/498089 — neuroscience — Posted on 2018-12-17

1109 Believing in one's power: a counterfactual heuristic for goal-directed control

Chambon, V.; Thero, H.; Findling, C.; Koechlin, E.

10.1101/498675 — neuroscience — Posted on 2018-12-17

1110 Single-cell membrane potential fluctuations evince network scale-freeness and quasicriticality

Johnson, J. K.; Wright, N. C.; Xia, J.; Wessel, R.

10.1101/498477 — neuroscience — Posted on 2018-12-17

1111 Accessory genome contributes to the virulence and resistance of the ocular isolate of Pseudomonas aeruginosa: A complete genome analysis

Subedi, D.; Kohli, G. S.; Vijay, A. K.; Willcox, M. D. P.; Rice, S. A.

10.1101/497974 — microbiology — Posted on 2018-12-17

1112 Enhanced nitrous oxide production in denitrifying Dechloromonas aromatica strain RCB under salt and alkaline conditions

Han, H.; Song, B.; Song, M. J.; Yoon, S.

10.1101/497941 — microbiology — Posted on 2018-12-17

1113 A bacterial-like mechanosensitive channel controls osmoregulation and infectivity in Trypanosoma cruzi

Dave, N.; Cetiner, U.; Daniel, A.; Fonbuena, J.; Barrera, P.; Lander, N.; Anishkin, A.; Sukharev, S.; Jimenez, V.

10.1101/498469 — microbiology — Posted on 2018-12-17

1114 Design of nanoparticulate group 2 influenza hemagglutinin stem antigens that activate unmutated ancestor B cell receptors of broadly neutralizing antibody lineages

Corbett, K. S.; Moin, S. M.; Yassine, H. M.; Cagigi, A.; Kanekiyo, M.; Boyoglu-Barnum, S.; Myers, S. I.; Tsybovsky, Y.; Wheatley, A. K.; Schramm, C. A.; Gillespie, R. A.; Shi, W.; Wang, L.; Zhang, Y.; Andrews, S. F.; Joyce, M. G.; Crank, M. C.; Douek, D. C.; McDermott, A. B.; Mascola, J. R.; Graham, B. S.; Boyington, J. C.

10.1101/497123 — immunology — Posted on 2018-12-17

1115 Clinical implications of identifying pathogenic variants in aortic dissection patients with whole exome sequencing

Wolford, B. N.; Hornsby, W. E.; Guo, D.; Zhou, W.; Lin, M.; Farhat, L.; McNamara, J.; Driscoll, A.; Wu, X.; Schmidt, E. M.; Norton, E. L.; Mathis, M. R.; Ganesh, S. K.; Douville, N. J.; Brummett, C. M.; Kitzman, J.; Chen, Y. E.; Kim, K.; Deeb, M.; Patel, H.; Eagle, K. A.; Milewicz, D. M.; Willer, C. J.; Yang, B.

10.1101/497917 — genetics — Posted on 2018-12-17

1116 Rapid evolution of an overt metabolic defect restores balanced growth

Green, R.; Lu, W.; Wang, L.; Hart, S. F.; Skelding, D.; Burton, J. C.; Capel, A.; Chen, H. A.; Lin, A.; Subramaniam, A. R.; Rabinowitz, J. D.; Shou, W.

10.1101/498543 — evolutionary biology — Posted on 2018-12-17

1117 Strong and lasting impacts of past global warming on baleen whale and prey abundance

Cabrera, A. A.; Schall, E.; Berube, M.; Bachmann, L.; Berrow, S.; Best, P. B.; Clapham, P. J.; Cunha, H. A.; Dalla Rosa, L.; Dias, C.; Findlay, K. P.; Haug, T.; Heide-Jorgensen, M. P.; Kovacs, K. M.; Landry, S.; Larsen, F.; Lopes, X. M.; Lydersen, C.; Mattila, D. K.; Oosting, T.; Pace, R. M.; Papetti, C.; Paspati, A.; Pastene, L. A.; Prieto, R.; Ramp, C.; Robbins, J.; Ryan, C.; Sears, R.; Secchi, E. R.; Silva, M. A.; Vikingsson, G.; Wiig, O.; Oien, N.; Palsboll, P. J.

10.1101/497388 — evolutionary biology — Posted on 2018-12-17

1118 Access COI barcode efficiently using high throughput Single End 400 bp sequencing

Yang, C.; Tan, S.; Meng, G.; Bourne, D. G.; O'Brien, P. A.; Xu, J.; Liao, S.; Chen, A.; Chen, X.; Liu, S.

10.1101/498618 — ecology — Posted on 2018-12-17

1119 Caterpillars on a phytochemical landscape

Forister, M. L.; Yoon, S.; Philbin, C. S.; Dodson, C. D.; Hart, B.; Harrison, J. G.; Shelef, O.; Fordyce, J. A.; Marion, Z. H.; Nice, C. C.; Richards, L. A.; Buerkle, C. A.; Lebeis, S.; Gompert, Z.

10.1101/498139 — ecology — Posted on 2018-12-17

1120 An Empirical Bayes Approach for the Identification of Long-range Chromosomal Interaction from Hi-C Data

Zhang, Q.; Xu, Z.; Lai, Y.

10.1101/497776 — bioinformatics — Posted on 2018-12-17

1121 Optogenetic stimulation of kisspeptin neurones within the posterodorsal medial amygdala increases LH pulse frequency in female mice

Lass, G.; Li, X.; de Burgh, R.; He, W.; Kuang, Y.; Yeo, S.-H.; Sinnett-Smith, L.; Colledge, W. H.; Grubb, M.; Lightman, S.; O'Byrne, K.

10.1101/497164 — neuroscience — Posted on 2018-12-17

1122 When temporal attention lacks confidence

Recht, S.; Mamassian, P.; de Gardelle, V.

10.1101/496232 — neuroscience — Posted on 2018-12-17

1123 Multivariate consistency of resting-state fMRI connectivity maps acquired on a single individual over 2.5 years, 13 sites and 3 vendors

Badhwar, A.; Collin-Verreault, Y.; Orban, P.; Urchs, S.; Chouinard, I.; Vogel, J.; Potvin, O.; Duchesne, S.; Bellec, P.

10.1101/497743 — neuroscience — Posted on 2018-12-17

1124 The impact of type VI secretion system, bacteriocins and antibiotics on competition amongst Soft-Rot Enterobacteriaceae: Regulation of carbapenem biosynthesis by iron and the transcriptional regulator Fur

Shyntum, D. Y.; Nkomo, N.; Gricia, A. R.; Shigange, N. L.; Bellieny-Rabelo, D.; Moleleki, L. N.

10.1101/497016 — microbiology — Posted on 2018-12-17

1125 Warming can destabilise predator-prey interactions by shifting the functional response from Type III to Type II

Daugaard, U.; Petchey, O.; Pennekamp, F.

10.1101/498030 — ecology — Posted on 2018-12-17

1126 Predicting Brain Age Using Structural Neuroimaging and Deep Learning

Varatharajah, Y.; Baradwaj, S.; Kiraly, A.; Ardila, D.; Iyer, R.; Shetty, S.; Kohlhoff, K.

10.1101/497925 — bioengineering — Posted on 2018-12-17

1127 Deconvoluting Stress-Responsive Proteostasis Signaling Pathways for Pharmacologic Activation using Targeted RNA-sequencing

Grandjean, J. M. D.; Plate, L.; Morimoto, R. I.; Bollong, M. J.; Powers, E. T.; Wiseman, R. L.

10.1101/499046 — cell biology — Posted on 2018-12-17

1128 Open access policies of leading medical journals: a cross-sectional study

Ellison, T. S.; Koder, T.; Schmidt, L.; Williams, A.; Winchester, C.

10.1101/250613 — scientific communication and education — Posted on 2018-12-17

1129 Prevention of chromatin destabilization by FACT is crucial for malignant transformation

Sandlesh, P.; Safina, A.; Goswami, I.; Prendergast, L.; Rosario, S.; Gomez, E. C.; Wanf, J.; Gurova, K. V.

10.1101/499376 — cell biology — Posted on 2018-12-17

1130 BetaScan2: Standardized statistics to detect balancing selection utilizing substitution data

Siewert, K. M.; Voight, B. F.

10.1101/497255 — evolutionary biology — Posted on 2018-12-17

1131 PLK1 protects centromeres from BLM-mediated disintegration to promote chromosome biorientation

Addis Jones, O.; Tiwari, A.; Olukoga, T.; Herbert, A.; Chan, K.-L.

10.1101/498808 — cell biology — Posted on 2018-12-17

1132 Retrograde transport of Akt by a neuronal Rab5-APPL1 endosome

Goto-Silva, L.; McShane, M. P.; Salinas, S.; Kalaidzidis, Y.; Schiavo, G.; Zerial, M.

10.1101/499004 — cell biology — Posted on 2018-12-17

1133 Decoupling of rates of protein synthesis from cell expansion leads to supergrowth

Knapp, B. D.; Odermatt, P.; Rojas, E. R.; Cheng, W.; He, X.; Huang, K. C.; Chang, F.

10.1101/498600 — cell biology — Posted on 2018-12-17

1134 Accurate quantification of copy-number aberrations and whole-genome duplications in multi-sample tumor sequencing data

Zaccaria, S.; Raphael, B. J.

10.1101/496174 — bioinformatics — Posted on 2018-12-17

1135 Assembly Defects Abrogate Proofreading by Initiation Factors and License the Entry of Premature Ribosomes into the Translation Cycle

Sharma, H.; Anand, B.

10.1101/498592 — biochemistry — Posted on 2018-12-17

1136 Admixture mapping in interspecific Populus hybrids identifies classes of genomic architectures for phytochemical, morphological and growth traits

Bresadola, L.; Caseys, C.; Castiglione, S.; Buerkle, C. A.; Wegmann, D.; Lexer, C.

10.1101/497685 — evolutionary biology — Posted on 2018-12-17

1137 Live imaging of the Foreign Body Reaction (FBR) to suture implantation in zebrafish reveals how dampening inflammation can reduce fibrosis.

Gurevich, D.; French, K.; Collin, J.; Cross, S.; Martin, P.

10.1101/498444 — cell biology — Posted on 2018-12-17

1138 Self-repair protects microtubules from their destruction by molecular motors

Triclin, S.; Inoue, D.; Gaillard, J.; Htet, Z. M.; De Santis, M.; Portran, D.; Derivery, E.; Aumeier, C.; Schaedel, L.; John, K.; Leterrier, C.; Reck-Peterson, S.; Blanchoin, L.; Thery, M.

10.1101/499020 — cell biology — Posted on 2018-12-17

1139 Systematic Discovery of Conservation States for Single-Nucleotide Annotation of the Human Genome

Sperlea, A. C.; Ernst, J.

10.1101/262097 — genomics — Posted on 2018-12-17

1140 Multi-omics characterization of interaction-mediated control of human protein abundance levels

Sousa, A.; Goncalves, E.; Mirauta, B.; Ochoa, D.; Stegle, O.; Beltrao, P.

10.1101/499434 — genomics — Posted on 2018-12-17

1141 Estimating driver-tissues by robust selective expression of genes associated with complex diseases or traits

Jiang, L.; Xue, C.; Chen, S.; Dai, S.; Chen, P.; Sham, P. C.; Wang, H.; Li, M.

10.1101/491878 — genetics — Posted on 2018-12-17

1142 Genomic features of asexual animals

Jaron, K. S.; Bast, J.; Ranallo-Benavidez, T. R.; Robinson-Rechavi, M.; Schwander, T.

10.1101/497495 — genomics — Posted on 2018-12-17

1143 Precision Medicine Advancements Using Whole Genome Sequencing, Noninvasive Whole Body Imaging, and Functional Diagnostics

Hou, Y.-C. C.; Yu, H.-C.; Martin, R.; Schenker-Ahmed, N. M.; Hicks, M.; Cirulli, E. T.; Cohen, I. V.; Jonsson, T. J.; Heister, R.; Napier, L.; Leon Swisher, C.; Dominguez, S.; Tang, H.; Li, W.; Barea, J.; Rybak, C.; Smith, E.; Duchicela, K.; Doney, M.; Brar, P.; Hernandez, N.; Kirkness, E. F.; Kahn, A. M.; Venter, J. C.; Karow, D. S.; Caskey, C. T.

10.1101/497560 — genomics — Posted on 2018-12-17

1144 Recombination in a natural population of the bdelloid rotifer Adineta vaga

Vakhrusheva, O. A.; Mnatsakanova, E. A.; Galimov, Y. R.; Neretina, T. V.; Gerasimov, E. S.; Ozerova, S. G.; Zalevsky, A. O.; Yushenova, I. A.; Arkhipova, I. R.; Penin, A. A.; Logacheva, M. D.; Bazykin, G. A.; Kondrashov, A. S.

10.1101/489393 — evolutionary biology — Posted on 2018-12-17

1145 Genome-wide Population Structure Analyses of Three Minor Millets: Kodo Millet, Little Millet, and Proso Millet

Johnson, M.; Deshpande, S.; Vetriventhan, M.; Upadhyaya, H.; Wallace, J.

10.1101/499087 — genetics — Posted on 2018-12-17

1146 CHC22 clathrin initiates biogenesis of the human GLUT4 storage compartment from the early secretory pathway

Camus, S. M.; Camus, M. D.; Figueras-Novoa, C.; Sadacca, L. A.; Esk, C.; Mouly, V.; Gould, G. W.; Kioumourtzoglou, D.; Perez, F.; Bryant, N. J.; Mukherjee, S.; Brodsky, F. M.

10.1101/242941 — cell biology — Posted on 2018-12-17

1147 ASPEN: Analyzing and reconstructing protein divergence using sequence subsampling

Sloutsky, R.; Naegle, K. M.

10.1101/170787 — evolutionary biology — Posted on 2018-12-17

1148 PLANT-Dx: A Molecular Diagnostic for Point of Use Detection of Plant Pathogens

Verosloff, M.; Chappell, J.; Perry, K. L.; Thompson, J. R.; Lucks, J. B.

10.1101/498998 — synthetic biology — Posted on 2018-12-17

1149 Benchmarker: an unbiased, association-data-driven strategy to evaluate gene prioritization algorithms

Fine, R. S.; Pers, T. H.; Amariuta, T.; Raychaudhuri, S.; Hirschhorn, J. N.

10.1101/497602 — genomics — Posted on 2018-12-17

1150 Computational Discovery of Evolutionary Conserved Enterovirus 71 RNA Secondary Structures

Fridlyand, N.; Lukashev, A. N.; Chursov, A.; Venanzi, F. M.; Yewdell, J. W.; Sufianov, A. A.; Shneider, A.

10.1101/495507 — bioinformatics — Posted on 2018-12-17

1151 Decoding the Epitranscriptional Landscape from Native RNA Sequences

Wongsurawat, T.; Jenjaroenpun, P.; Wassenaar, T. M.; Wadley, T. D.; Wanchai, V.; Akel, N. N.; Franco, A. T.; Jennings, M. L.; Ussery, D. W.; Nookaew, I.

10.1101/487819 — genetics — Posted on 2018-12-17

1152 Novel haplotypes and networks of AVR-Pik alleles in Magnaporthe oryzae

Li, J.-b.; Wang, Q.; Li, C.; Bi, Y.; Fu, X.; Wang, R.

10.1101/499335 — evolutionary biology — Posted on 2018-12-17

1153 Using deep maxout neural networks to improve the accuracy of function prediction from protein interaction networks

Wan, C.; Cozzetto, D.; Fa, R.; Jones, D. T.

10.1101/499244 — bioinformatics — Posted on 2018-12-17

1154 Metabolic Network Reductions

Tefagh, M.; Boyd, S. P.

10.1101/499251 — systems biology — Posted on 2018-12-17

1155 Bayesian inference and comparison of stochastic transcription elongation models

Douglas, J.; Kingston, R.; Drummond, A.

10.1101/499277 — molecular biology — Posted on 2018-12-17

1156 Terminal Reproductive Investment, Physiological Trade-offs and Pleiotropic Effects: Their effects produce complex immune/reproductive interactions in the cricket Gryllus texensis

Miyashita, A.; Lee, T. Y. M.; McMillan, L. E.; Easy, R.; Adamo, S. A.

10.1101/499236 — ecology — Posted on 2018-12-17

1157 Cold Response of the Mediterranean fruit fly (Ceratitis capitata) in the Lab Diet

Al-behadili, F. j.

10.1101/499228 — zoology — Posted on 2018-12-17

1158 State-aware detection of sensory stimuli in the cortex of the awake mouse

Sederberg, A.; Pala, A.; Zheng, H. J. V.; He, B. J.; Stanley, G. B.

10.1101/499269 — neuroscience — Posted on 2018-12-17

1159 Analysis of the global frequency and penetrance of ATP7B variants: implications for Wilson disease prevalence

Wallace, D. F.; Dooley, J. S.

10.1101/499285 — genetics — Posted on 2018-12-17

1160 Vaginal lubricants in the couple trying-to-conceive: assessing healthcare professional recommendations and effect on in vitro sperm function

Mackenzie, S. C.; Gellatly, S. A.

10.1101/499293 — cell biology — Posted on 2018-12-17

1161 Genetic association between angiotensin converting enzyme gene in Saudi obese women established gestational diabetes; Non-replication of case-control studies in insertion and deletion polymorphism

Alodhayani, A.

10.1101/499137 — molecular biology — Posted on 2018-12-17

1162 Transcriptomic responses to thermal stress and varied phosphorus conditions in Symbiodinium kawagutii

Yu, L.; Lin, S.; Zhang, H.

10.1101/499210 — microbiology — Posted on 2018-12-17

1163 Life in coastal pebble sediment: Unique interstitial organism community and selective feeding on meiobenthos by interstitial fishes (Luciogobius: Gobiidae)

Kondo, K.; Kato, M.

10.1101/499194 — ecology — Posted on 2018-12-17

1164 STUDY ON THE INFLAMMATORY RESPONSE OF PMMA/POLYSTYRENE/SILICA NANOCOMPOSITE MEMBRANES FOR DRUG DELIVERY AND DENTAL APPLICATIONS

Saravanabhavan, S. S.; NATARAJAN, K.; Elumalai, S.; Zsolt, S.; SELVAM, M. K.; Janakiraman, M.; Jonna, N.; Palaniappan, K. V.; PALANI, K.; Venkatesan, P.; Natesan, B.

10.1101/499160 — scientific communication and education — Posted on 2018-12-17

1165 Competitive balance in the big five European leagues based on Shannon entropy

Zhao, Y.; Zhang, H.

10.1101/499178 — scientific communication and education — Posted on 2018-12-17

1166 Reference genes for RT-qPCR normalisation in different tissues, developmental stages and stress conditions of Hypericum perforatum

Wang, Z.; Zhou, W.; Yang, L.; Sun, Y.; Zhang, Q.; Li, B.; Wang, B.; Li, L.; Wang, D.; Wang, S.

10.1101/499186 — plant biology — Posted on 2018-12-17

1167 Tolerance and dependence to Δ9-tetrahydrocannabinol in rhesus monkeys: activity assessments

Schulze, D. R.; McMahon, L.

10.1101/499152 — pharmacology and toxicology — Posted on 2018-12-17

1168 Control of noncoding RNA production and histone levels by a 5’ tRNA fragment

Boskovic, A.; Bing, X. Y.; Kaymak, E.; Rando, O. J.

10.1101/498949 — molecular biology — Posted on 2018-12-17

1169 Comparison of antibody titres between intradermal and intramuscular rabies vaccination using inactivated vaccine in cattle in Bhutan.

Wangmo, K.; Laven, R.; Cliquet, F.; Wasniewski, M.; Yang, A.

10.1101/499145 — immunology — Posted on 2018-12-17

1170 Deciphering noise amplification and reduction in open chemical reaction networks

Pucci, F.; Rooman, M.

10.1101/254086 — systems biology — Posted on 2018-12-17

1171 De novo Microbial Biosynthesis of a Lactate Ester Platform

Lee, J.; Trinh, C. T.

10.1101/498576 — synthetic biology — Posted on 2018-12-17

1172 Functionally distinct high and low theta oscillations in the human hippocampus

Goyal, A.; Miller, J.; Qasim, S.; Watrous, A. J.; Stein, J. M.; Inman, C. S.; Gross, R. E.; Willie, J. T.; Lega, B.; Lin, J.-J.; Sharan, A.; Wu, C.; Sperling, M. R.; Sheth, S. A.; McKhann, G. M.; Smith, E. H.; Schevon, C.; Jacobs, J.

10.1101/498055 — neuroscience — Posted on 2018-12-17

1173 A novel non-invasive method to detect gut barrier related changes during a gastrointestinal nematode infection.

Ahmed, N.; Affinass, N.; Heitlinger, E.; Kühl, A. A.; Xenophontos, N.; Jarquin, V. H.; Jost, J.; Steinfelder, S.; Hartmann, S.

10.1101/496760 — immunology — Posted on 2018-12-17

1174 The Influence of Magnetic Fields on Selected Physiological Parameters of Blood and Tissues in Mice

Abdelsalam, H.; Elywa, M.

10.1101/497990 — physiology — Posted on 2018-12-17

1175 White matter microstructure in women with acute and remitted anorexia nervosa: an exploratory neuroimaging study

Miles, A.; Kaplan, A.; French, L.; Voineskos, A.

10.1101/497669 — neuroscience — Posted on 2018-12-17

1176 Data-Driven Analysis of Age, Sex, and Tissue Effects on Gene Expression Variability in Alzheimer’s Disease

Brooks, L. R.; Mias, G.

10.1101/498527 — neuroscience — Posted on 2018-12-17

1177 Improved peak-calling with MACS2

Gaspar, J. M.

10.1101/496521 — bioinformatics — Posted on 2018-12-17

1178 Sex Differences in Effects of Obesity on Reproductive Hormones and Glucose Metabolism in Puberty: The Health Influences of Puberty Study

Nokoff, N.; Thurston, J.; Hilkin, A.; Pyle, L.; Zeitler, P. E.; Nadeau, K.; Santoro, N.; Kelsey, M.

10.1101/497339 — physiology — Posted on 2018-12-17

1179 Neural correlates of cue-induced changes in decision-making distinguish subjects with gambling disorder from healthy controls

Genauck, A.; Matthis, C.; Andrejevic, M.; Ballon, L.; Chiarello, F.; Duecker, K.; Heinz, A.; Kathmann, N.; Romanczuk-Seiferth, N.

10.1101/498725 — neuroscience — Posted on 2018-12-17

1180 A mechatronic system for studying energy optimization during walking.

Simha, S. N.; Donelan, J. M.

10.1101/496489 — neuroscience — Posted on 2018-12-17

1181 DRD2 and FOXP2 are implicated in the associations between computerized device use and psychiatric disorders

Wendt, F. R.; Carvalho, C.; Gelernter, J.; Polimanti, R.

10.1101/497420 — genomics — Posted on 2018-12-17

1182 Use of RNA and DNA to Identify Mechanisms of Microbial Community Homogenization

Meyer, K. M.; Petersen, I. A. B.; Tobi, E.; Korte, L.; Bohannan, B.

10.1101/496679 — ecology — Posted on 2018-12-17

1183 Stimulation of the posterior cingulate impairs episodic memory encoding

Natu, V. S.; Lin, J.-J.; Burks, A.; Arora, A.; Rugg, M. D.; Lega, B.

10.1101/497818 — neuroscience — Posted on 2018-12-17

1184 Rapid ocular responses are a robust marker for bottom-up driven auditory salience

Zhao, S.; Yum, N. W.; Benjamin, L.; Benhamou, E.; Furukawa, S.; Dick, F.; Slaney, M.; Chait, M.

10.1101/498485 — neuroscience — Posted on 2018-12-17

1185 Qtlizer: comprehensive QTL annotation of GWAS results

Munz, M.; Wohlers, I.; Simon, E.; Cardiogenics Consortium, ; Schaefer, A. S.; Erdmann, J.

10.1101/495903 — bioinformatics — Posted on 2018-12-17

1186 Rats exhibit similar biases in foraging and intertemporal choice tasks

Kane, G. A.; Bornstein, A. M.; Shenhav, A.; Wilson, R. C.; Daw, N. D.; Cohen, J. D.

10.1101/497321 — animal behavior and cognition — Posted on 2018-12-17

1187 Association of physiological variables with football subconcussive head impacts: Why measure?

Huibregtse, M. E.; Zonner, S. W.; Ejima, K.; Bevilacqua, Z. W.; Newman, S.; Macy, J. T.; Kawata, K.

10.1101/493700 — physiology — Posted on 2018-12-17

1188 Description of Schaedlerella arabinophila gen. nov., sp. nov., a D-arabinose utilizing bacterium isolated from feces of C57BL/6J mice and a close relative of Clostridium sp. ASF 502

Soh, M.; Miyake, S.; Lim, A.; Seedorf, H.

10.1101/496661 — microbiology — Posted on 2018-12-17

1189 LIN-15B promotes enrichment of H3K9me2 on the promoters of a subset of germline genes that are repressed in somatic cells in C. elegans

Rechtsteiner, A.; Costello, M. E.; Egelhofer, T. A.; Garrigues, J. M.; Strome, S.; Petrella, L.

10.1101/497438 — genetics — Posted on 2018-12-17

1190 Adaptation to developmental diet influences the response to selection on age at reproduction in the fruit fly

May, T.; van den Heuvel, J.; Doroszuk, A.; Hoedjes, K.; Flatt, T.; Zwaan, B.

10.1101/496836 — evolutionary biology — Posted on 2018-12-17

1191 Disentangling the origins of confidence in speeded perceptual judgments through multimodal imaging

Pereira, M.; Faivre, N.; Iturrate, I.; Wirthlin, M.; Serafini, L.; Martin, S.; Desvachez, A.; Blanke, O.; Van De Ville, D.; Millan, J. d. R.

10.1101/496877 — neuroscience — Posted on 2018-12-17

1192 Apigenin as a Candidate Prenatal Treatment for Trisomy 21: Effects in Human Amniocytes and the Ts1Cje Mouse Model

Guedj, F.; Pennings, J. L.; Siegel, A. E.; Alsebaa, F.; Massingham, L. J.; Tantravahi, U.; Bianchi, D. W.

10.1101/495283 — genetics — Posted on 2018-12-17

1193 Sexual selection drives the evolution of wing interference patterns.

Hawkes, M.; Duffy, E.; Joag, R.; Skeats, A.; Radwan, J.; Wedell, N.; Sharma, M.; Hosken, D.; Troscianko, J.

10.1101/497115 — evolutionary biology — Posted on 2018-12-17

1194 Mitofusin 1 is required for the oocyte-granulosa cell communication that regulates oogenesis

Machado, T. S.; Carvalho, K. F.; Garcia, B. M.; Zangirolamo, A. F.; Macabelli, C. H.; Sugiyama, F. H. C.; Grejo, M. P.; Augusto Neto, J. D.; Ribeiro, F. K. S.; Sarapiao, F. D.; Meirelles, F. V.; Guimaraes, F. E. G.; Pernas, L.; Seneda, M. M.; Chiaratti, M. R.

10.1101/498642 — developmental biology — Posted on 2018-12-17

1195 Pain neuroscience education on YouTube: a systematic review

Heathcote, L. C.; Pate, J. W.; Park, A. L.; Leake, H. B.; Moseley, G. L.; Kronman, C. A.; Fischer, M.; Timmers, I.; Simons, L. E.

10.1101/492967 — scientific communication and education — Posted on 2018-12-17

1196 Empirical examination of the replicability of associations between brain structure and psychological variables

Kharabian, S.; Eickhoff, S.; Hoffstaedter, F.; Genon, S.

10.1101/496729 — neuroscience — Posted on 2018-12-17

1197 Additive effect of contrast and velocity proves the role of strong excitatory drive in suppression of visual gamma response.

Orekhova, E. V.; Prokofyev, A. O.; Nikolaeva, A. Y.; Schneiderman, J. F.; Stroganova, T.

10.1101/497214 — neuroscience — Posted on 2018-12-17

1198 The hippocampus encodes delay and value information during delay-discounting decision making

Masuda, A.; Sano, C.; Zhang, Q.; Goto, H.; McHugh, T. J.; Fujisawa, S.; Itohara, S.

10.1101/495598 — neuroscience — Posted on 2018-12-17

1199 Validation of the Malawi Developmental Assessment Tool for Children in the Dominican Republic

Sanchez-Vincitore, L. V.; Schaettle, P.; Castro, A.

10.1101/497347 — neuroscience — Posted on 2018-12-17

1200 Actimetry in infant sleep research: an approach to facilitate comparability

Schoch, S.; Jenni, O. G.; Kohler, M.; Kurth, S.

10.1101/494427 — neuroscience — Posted on 2018-12-17

1201 Molecular determinants of metazoan tricRNA biogenesis

Schmidt, C. A.; Giusto, J. D.; Matera, A. G.

10.1101/497545 — molecular biology — Posted on 2018-12-17

1202 Identification of novel anti-bacterial compounds from a chemically highly diverse pathways-based library using phenotypic screens in amoebae host models

Kicka, S.; Hanna, N.; Chiriano, G.; Harrison, C.; Ouertatani Sakouhi, H.; Trofimov, V.; Kranjc, A.; Hilbi, H.; Cosson, P.; Scapozza, L.; Soldati, T.

10.1101/497032 — microbiology — Posted on 2018-12-17

1203 Nanopore metagenomic sequencing of full length human metapneumovirus (HMPV) within a unique sub-lineage

Xu, Y.; Lewandowski, K.; Lumley, S.; Sanderson, N. D.; Vaughan, A.; Vipond, R. T.; Carroll, M. W.; Jeffery, K.; Foster, D.; Walker, A. S.; Peto, T. E. A.; Crook, D. W.; Pullan, S. T.; Matthews, P. C.

10.1101/496687 — microbiology — Posted on 2018-12-17

1204 Native CRISPR-Cas mediated in situ genome editing reveals extensive resistance synergy in the clinical multidrug resistant Pseudomonas aeruginosa

Xu, Z.; Li, M.; Li, Y.; Cao, H.; Xiang, H.; Yan, A.

10.1101/496711 — microbiology — Posted on 2018-12-17

1205 GenomeGraphR: A user-friendly open-source web application for foodborne pathogen Whole Genome Sequencing data integration, analysis, and visualization.

Sanaa, M.; Pouillot, R.; Garces-Vega, F. J.; Strain, E.; Van Doren, J. M.

10.1101/495309 — microbiology — Posted on 2018-12-17

1206 Expression of the miR-302/367 microRNA cluster is regulated by a conserved long non-coding host gene

Rahimi, K.; Fuchtbauer, A. C.; Fathi, F.; Mowla, S. J.; Fuchtbauer, E.-M.

10.1101/497131 — genetics — Posted on 2018-12-17

1207 The Germline Variants rs61757955 and rs34988193 are Predictive of Survival in Low Grade Glioma Patients

Chatrath, A.; Kiran, M.; Pankaj, K.; Ratan, A.; Dutta, A.

10.1101/497354 — cancer biology — Posted on 2018-12-17

1208 DISTMIX2: robust imputation of summary statistics for cosmopolitan cohorts using a large and diverse reference panel

Chatzinakos, C.; Lee, D.; Na, C.; Vladimirov, V.; Webb, B. T.; Riley, B.; Flint, J.; Kendler, K.; Bacanu, S.-A.

10.1101/496570 — bioinformatics — Posted on 2018-12-17

1209 Vaccinomics strategy for developing a unique multi-epitope monovalent vaccine against Marburg marburgvirus

Hasan, M.; Azim, K. F.; Begum, A.; Khan, N. A.; Shammi, T. S.; Imran, M. A. S.; Chowdhury, I. M.; Urme, S. R. A.

10.1101/484923 — bioinformatics — Posted on 2018-12-17

1210 The Bayesian Superorganism II: optimal foraging and the information theory of gambling

Baddeley, R. J.; Franks, N. R.; Hunt, E. R.

10.1101/497198 — animal behavior and cognition — Posted on 2018-12-17

1211 Phylogenetic reconstruction and divergence time estimation of Blumea DC. (Asteraceae: Inuleae) in China based on nrDNA ITS and cpDNA trnL-F sequences

Zhang, Y.; Yuan, Y.; Pang, Y.-x.; Yu, F.-l.; Wang, D.; Hu, X.; Chen, X.-l.; Guan, L.-l.; Yuan, C.

10.1101/497073 — systems biology — Posted on 2018-12-17

1212 Enhancer features that drive formation of transcriptional condensates

Shrinivas, K.; Sabari, B. R.; Coffey, E. L.; Klein, I. A.; Boija, A.; Zamudio, A. V.; Schuijers, J.; Hannett, N. M.; Sharp, P. A.; Young, R. A.; Chakraborty, A. K.

10.1101/495606 — molecular biology — Posted on 2018-12-17

1213 FishNET: An automated relational database for zebrafish colony management.

Cantu Gutierrez, A.; Cantu Gutierrez, M.; Rhyner, A. M.; Ruiz, O.; Eisenhoffer, G. T.; Wythe, J. D.

10.1101/494971 — genetics — Posted on 2018-12-17

1214 Image-based Phenotyping and Disease Screening of Multiple Populations for resistance to Verticillium dahliae in cultivated strawberry Fragaria x ananassa

Cockerton, H. M.; Li, B.; Vickertstaff, R. J.; Eyre, C. A.; Sargent, D. J.; Armitage, A. D.; Marina-Montes, C.; Garcia, A.; Passey, A. J.; Simpson, D. W.; Harrison, R.

10.1101/497107 — genetics — Posted on 2018-12-17

1215 Multiple modes of convergent adaptation in the spread of glyphosate-resistant Amaranthus tuberculatus

Kreiner, J. M.; Giacomini, D.; Bemm, F.; Waithaka, B.; Regalado, J.; Lanz, C.; Hildebrandt, J.; Sikkema, P. H.; Tranel, P. J.; Weigel, D.; Stinchcombe, J. R.; Wright, S. I.

10.1101/498519 — evolutionary biology — Posted on 2018-12-17

1216 Dicer-like 5 deficiency confers temperature-sensitive male sterility in maize

Teng, C.; Zhang, H.; Hammond, R.; Huang, K.; Meyers, B.; Walbot, V.

10.1101/498410 — plant biology — Posted on 2018-12-17

1217 A framework for genomics-informed ecophysiological modeling in plants

Wang, D. R.; Guadagno, C. R.; Mao, X.; Mackay, D. S.; Pleban, J. R.; Baker, R. L.; Weinig, C.; Jannink, J.-L.; Ewers, B. E.

10.1101/497537 — plant biology — Posted on 2018-12-17

1218 Gene encoding a novel enzyme of LDH2/MDH2 family is lost in plant and animal genomes during transition to land

Puzakova, L.; Puzakov, M.; Soldatov, A.

10.1101/495713 — evolutionary biology — Posted on 2018-12-17

1219 cellHarmony: Cell-level matching and comparison of single-cell transcriptomes

DePasquale, E. A.; Ferchen, K.; Hay, S.; Grimes, H. L.; Salomonis, N.

10.1101/412080 — bioinformatics — Posted on 2018-12-17

1220 BioLogic, a parallel approach to cell-based logic gates

Millacura, F. A.; Largey, B.; French, C. E.

10.1101/303032 — synthetic biology — Posted on 2018-12-17

1221 The representational dynamics of visual objects in rapid serial visual processing streams

Grootswagers, T.; Robinson, A. K.; Carlson, T. A.

10.1101/394148 — neuroscience — Posted on 2018-12-17

1222 Dissociable components of the reward circuit are involved in appraisal versus choice

Shenhav, A.; Karmarkar, U. R.

10.1101/172320 — neuroscience — Posted on 2018-12-17

1223 Statistical Model of Motor Evoked Potentials for Simulation of Transcranial Magnetic and Electric Stimulation

Goetz, S. M.; Mahdi Alavi, S. M.; Deng, Z.-D.; Peterchev, A. V.

10.1101/406777 — physiology — Posted on 2018-12-17

1224 Nucleus accumbens neurochemistry in human anxiety: A 7T 1H-MRS study

Strasser, A.; Xin, L.; Gruetter, R.; Sandi, C.

10.1101/498337 — neuroscience — Posted on 2018-12-17

1225 The Cost of Appearing Suspicious? Information Gathering Costs in Trust Decisions

Ma, I.; Sanfey, A. G.; Ma, W. J.

10.1101/495697 — neuroscience — Posted on 2018-12-17

1226 The implied motion aftereffect changes decisions, but not confidence

Gallagher, R.; Suddendorf, T.; Arnold, D. H.

10.1101/498048 — neuroscience — Posted on 2018-12-17

1227 Serotonin regulates mitochondrial biogenesis and function in rodent cortical neurons via the 5-HT2A receptor and SIRT1-PGC-1α axis

Fanibunda, S.; Deb, S.; Maniyadath, B.; Gupta, S.; Weisstaub, N.; Gingrich, J.; Vaidya, A.; Kolthur-Seetharam, U.; Vaidya, V. A.

10.1101/497982 — neuroscience — Posted on 2018-12-16

1228 Endogenous variation in ventromedial prefrontal cortex state dynamics during naturalistic viewing reflects affective experience

Chang, L. J.; Jolly, E.; Cheong, J. H.; Rapuano, K.; Greenstein, N.; Chen, P.-H. A.; Manning, J. R.

10.1101/487892 — neuroscience — Posted on 2018-12-16

1229 Neuroanatomical correlates of temperament and cognitive function in women with and without anorexia nervosa

Miles, A.; Kaplan, A.; Voineskos, A.

10.1101/498097 — neuroscience — Posted on 2018-12-16

1230 The paradox of Rapid Eye Movement sleep in the light of oscillatory activity and functional synchronization during phasic and tonic microstates

Simor, P.; van Der Wijk, G.; Gombos, F.; Kovacs, I.

10.1101/498212 — neuroscience — Posted on 2018-12-16

1231 Deep Learning provides exceptional accuracy to ECoG-based Functional Language Mapping for epilepsy surgery

RaviPrakash, H.; Korostenskaja, M.; Castillo, E. M.; Lee, K. H.; Salinas, C. M.; Baumgartner, J.; Spampinato, C.; Bagci, U.

10.1101/497644 — neuroscience — Posted on 2018-12-17

1232 Microsecond Interaural Time Difference Discrimination Restored by Cochlear Implants After Neonatal Deafness

Rosskothen-Kuhl, N.; Buck, A. N.; Li, K.; Schnupp, J. W.

10.1101/498105 — neuroscience — Posted on 2018-12-16

1233 Network modules linking expression and methylation in prefrontal cortex of schizophrenia

Lin, D.; Chen, J.; Perrone-Bizzozero, N.; Sui, J.; Calhoun, V.; Liu, J.

10.1101/497891 — neuroscience — Posted on 2018-12-16

1234 Current models cannot account for V1’s specialisation for binocular natural image statistics

Henriksen, S.; Butts, D. A.; Read, J. C. A.; Cumming, B. G.

10.1101/497008 — neuroscience — Posted on 2018-12-16

1235 Human sequence learning involves creating new neural representations not strengthening old ones

Kalm, K.; Norris, D.

10.1101/496893 — neuroscience — Posted on 2018-12-16

1236 Properties of Predictive Gain Modulation in a Dragonfly Visual Neuron

Fabian, J. M.; Dunbier, J. R.; O'Carroll, D. C.; Wiederman, S. D.

10.1101/496885 — neuroscience — Posted on 2018-12-16

1237 Semantic Probing: Feasibility of using sequential probes to decode what is on a user’s mind

Dijkstra, K.; Farquhar, J.; Desain, P.

10.1101/496844 — neuroscience — Posted on 2018-12-16

1238 Myc stimulates cell cycle progression through the activation of Cdk1 and phosphorylation of p27

Leon, J.; Garcia-Gutierrez, L.; Bretones, G.; Molina, E.; Arechaga, I.; Acosta, J. C. R.; Blanco, R.; Fernandez, A.; Alonso, L.; Sicinski, P.; Barbacid, M.; Santamaria, D.

10.1101/492694 — cancer biology — Posted on 2018-12-16

1239 Lipid interactions enhance activation and potentiation of cystic fibrosis transmembrane conductance regulator (CFTR)

Chin, S.; Ramjeesingh, M.; Hung, M.; Ereno-Oreba, J.; Ing, C. E.; Zeng, Z. W.; Cui, H.; Julien, J.-P.; Pomes, R.; Bear, C.

10.1101/495010 — biophysics — Posted on 2018-12-16

1240 Homeostatic and tumourigenic activity of SOX2+ pituitary stem cells is controlled by the LATS/YAP/TAZ cascade

Lodge, E. J.; Santambrogio, A.; Russell, J. P.; Xekouki, P.; Jacques, T.; Johnson, R.; Thavaraj, S.; Bornstein, S. R.; Andoniadou, C. L.

10.1101/492165 — developmental biology — Posted on 2018-12-16

1241 YAP/TAZ-TEAD Activity Links Mechanical Cues To Cell Progenitor Behavior During Hindbrain Segmentation

Voltes, A.; Hevia, C. F.; Dingare, C.; Calzolari, S.; Terriente, J.; Norden, C.; Lecaudey, V.; Pujades, C.

10.1101/366351 — developmental biology — Posted on 2018-12-16

1242 Oxytocin involves in chronic stress-evoked melanoma metastasis via β-arrestin 2 mediated-pathways

Ji, H.; Liu, N.; Li, J.; Chen, D.; Luo, D.; Sun, Q.; Yin, Y.; Liu, Y.; Bu, B.; Chen, X.; Li, J.

10.1101/494484 — cancer biology — Posted on 2018-12-16

1243 Bow-tie motifs enable protein multifunctionality by connecting cellular processes in the interactome

Niss, K.; Hu, J. X.; Gomez-Casado, C.; Joeris, T.; Agace, W. W.; Belling, K. G.; Brunak, S.

10.1101/495895 — systems biology — Posted on 2018-12-16

1244 Estimating the fitness effect of deleterious mutations during the two phases of the life cycle: a new method applied to the root-rot fungus Heterobasidion parviporum

Clergeot, P.-H.; Rode, N.; Glemin, S.; Brandstroem-Durling, M.; Ihrmark, K.; Olson, A.

10.1101/492686 — evolutionary biology — Posted on 2018-12-16

1245 Motor properties of PilT-independent type 4 pilus retraction in gonococci

Zöllner, R.; Cronenberg, T.; Maier, B.

10.1101/497933 — biophysics — Posted on 2018-12-16

1246 The molecular architecture of engulfment during Bacillus subtilis sporulation

Khanna, K.; Lopez-Garrido, J.; Zhao, Z.; Watanabe, R.; Yuan, Y.; Pogliano, K.; Villa, E.

10.1101/498220 — microbiology — Posted on 2018-12-16

1247 Historical abundance and distributions of Salpa thompsoni hot spots in the Southern Ocean, with projections for further ocean warming

Słomska, A. W.; Panasiuk, A.; Weydmann, A.; Wawrzynek, J.; Konik, M.; Siegel, V.

10.1101/496257 — animal behavior and cognition — Posted on 2018-12-16

1248 Revisiting the window of opportunity for co-transcriptional splicing efficiency and fidelity

Aslanzadeh, V.; Beggs, J.

10.1101/497040 — molecular biology — Posted on 2018-12-16

1249 The bacillithiol pathway is required for biofilm formation in Staphylococcus aureus

Gulati, M.; Thomas, J. M.; Rawat, M.; Nobile, C. J.

10.1101/496653 — microbiology — Posted on 2018-12-16

1250 An RNA-binding region regulates CTCF clustering and chromatin looping

Hansen, A. S.; Hsieh, T.-H. S.; Cattoglio, C.; Pustova, I.; Darzacq, X.; Tjian, R.

10.1101/495432 — biophysics — Posted on 2018-12-16

1251 opentsv prevents the corruption of scientific data byExcel

De Rijk, P.; D'Hert, S.; Strazizar, M.

10.1101/497370 — bioinformatics — Posted on 2018-12-16

1252 Highly Specific Enrichment of Rare Nucleic Acids using Thermus Thermophilus Argonaute

Song, J.; Hegge, J. W.; Mauk, M. G.; Bhagwat, N.; Till, J. E.; Azink, L. T.; Peng, J.; Sen, M.; Chen, J.; Mays, J.; Carpenter, E.; Oost, J. v. d.; Bau, H. H.

10.1101/491738 — molecular biology — Posted on 2018-12-16

1253 Rapid Whole Cell Imaging Reveals An APPL1-Dynein Nexus That Regulates Stimulated EGFR Trafficking

York, H.; Kaur, A.; Patil, A.; Bhowmik, A.; Moorthi, U. K.; Hyde, G. J.; Gandhi, H.; Gaus, K.; Arumugam, S.

10.1101/481796 — cell biology — Posted on 2018-12-16

1254 The Caspase-3 homolog DrICE regulates endocytic trafficking during Drosophila tracheal morphogenesis

McSharry, S.; Beitel, G. J.

10.1101/448944 — cell biology — Posted on 2018-12-16

1255 Integrated NMR and cryo-EM atomic-resolution structure determination of a half-megadalton enzyme complex

Gauto, D.; Estrozi, L.; Schwieters, C.; Effantin, G.; Macek, P.; sounier, r.; Sivertsen, A. C.; Schmidt, E.; Kerfah, R.; Mas, G.; Colletier, J.-P.; Guntert, P.; Favier, A.; Schoehn, G.; Boisbouvier, J.; Schanda, P.

10.1101/498287 — biophysics — Posted on 2018-12-16

1256 A novel somatosensory spatial navigation system outside the hippocampal formation

Long, X.; Zhang, S.-J.

10.1101/473090 — neuroscience — Posted on 2018-12-16

1257 Boreal marine fauna from the Barents Sea diperse to Arctic Northeast Greenland

Andrews, A. J.; Christiansen, J. S.; Bhat, S.; Lynghammar, A.; Westgaard, J.-I.; Pampoulie, C.; Praebel, K.

10.1101/394346 — ecology — Posted on 2018-12-16

1258 Ribosomal DNA and the rDNA-binding protein Indra mediate non-random sister chromatid segregation in Drosophila male germline stem cells

Watase, G.; Yamashita, Y.

10.1101/498352 — developmental biology — Posted on 2018-12-16

1259 Identification of Hydrophobic Gates by Simulation-Enabled Analysis of the Ion Channel Structural Proteome

Rao, S.; Klesse, G.; Stansfeld, P. J.; Tucker, S. J.; Sansom, M. S. P.

10.1101/498386 — biophysics — Posted on 2018-12-16

1260 Genetic Effects of Welding Fumes on the Development of Respiratory System Diseases

Rana, H. K.; Akhtar, M. R.; Islam, M. B.; Ahmed, M. B.; Lio, P.; Quinn, J. M. W.; Huq, F.; Moni, M. A.

10.1101/480855 — bioinformatics — Posted on 2018-12-16

1261 Homologous Recombination as an Evolutionary Force in African Swine Fever Viruses

Zhu, Z.; Xiao, C.-T.; Fan, Y.; Cai, Z.; Lu, C.; Zhang, G.; Jiang, T.; Tan, Y.; Peng, Y.

10.1101/460832 — microbiology — Posted on 2018-12-16

1262 Blockade of β-adrenergic receptor signaling improves cancer vaccine efficacy through its effect on naive CD8+ T-cell priming

Daher, C.; Vimeux, L.; Stoeva, R.; Peranzoni, E.; Bismuth, G.; Donnadieu, E.; Bercovici, N.; Trautmann, A.; Feuillet, V.

10.1101/497263 — immunology — Posted on 2018-12-16

1263 Structural insights into substrate recognition by the SOCS2 E3 ubiquitin ligase

Kung, W.-W.; Ramachandran, S.; Makukhin, N.; Bruno, E.; Ciulli, A.

10.1101/470187 — biochemistry — Posted on 2018-12-16

1264 Optimal features for auditory categorization

Liu, S. T.; Montes-Lourido, P.; Wang, X.; Sadagopan, S.

10.1101/411611 — neuroscience — Posted on 2018-12-16

1265 Resistance from Afar: Distal Mutation V36M Allosterically Modulates the Active Site to Accentuate Drug Resistance in HCV NS3/4A Protease

Ozen, A.; Lin, K.-H.; Romano, K. P.; Tavella, D.; Newton, A.; Petropoulos, C. J.; Huang, W.; Aydin, C.; Schiffer, C.

10.1101/452284 — molecular biology — Posted on 2018-12-16

1266 Detecting mosaic patterns in phenotypic disparity

Parins-Fukuchi, C.

10.1101/423228 — evolutionary biology — Posted on 2018-12-16

1267 Eye-position error influence over \"open-loop\" smooth pursuit initiation

Buonocore, A.; Skinner, J.; Hafed, Z. M.

10.1101/404491 — neuroscience — Posted on 2018-12-16

1268 Do adolescents take more risks? Not when facing a novel uncertain situation

Elteto, N.; Janacsek, K.; Kobor, A.; Takacs, A.; Toth-Faber, E.; Nemeth, D.

10.1101/206128 — neuroscience — Posted on 2018-12-16

1269 Stochastic rank aggregation for the identification of functional neuromarkers

Galdi, P.; Fratello, M.; Trojsi, F.; Russo, A.; Tedeschi, G.; Tagliaferri, R.; Esposito, F.

10.1101/329383 — neuroscience — Posted on 2018-12-16

1270 Using Flow Cytometry and Multistage Machine Learning to Discover Label-Free Signatures of Algal Lipid Accumulation

Tanhaemami, M.; Alizadeh, E.; Sanders, C.; Marrone, B.; Munsky, B.

10.1101/497834 — systems biology — Posted on 2018-12-16

1271 The Case For and Against Double-blind Reviews

Cox, A. R.; Montgomerie, R.

10.1101/495465 — scientific communication and education — Posted on 2018-12-16

1272 Blood vessels guide Schwann cell migration in the adult demyelinated CNS through Eph/ephrin signaling

Garcia-Diaz, B.; Bachelin, C.; Coulpier, F.; Gerschenfeld, G.; Deboux, C.; Zujovic, V.; Charnay, P.; Topilko, P.; Baron-Van Evercooren, A.

10.1101/498261 — neuroscience — Posted on 2018-12-16

1273 An Adhesive Interface For The Non-Clustered δ1 Protocadherin-1 Involved In Respiratory Diseases

Modak, D.; Sotomayor, M.

10.1101/498196 — biochemistry — Posted on 2018-12-16

1274 Optimising multi-batch TMT analysis to mitigate inflation of missing values, false positives and diminished inter batch accuracy

Brenes, A.; Hukelmann, J. L.; Bensaddek, D.; Lamond, A. I.

10.1101/497396 — biochemistry — Posted on 2018-12-16

1275 OCT4 expression regulated apoptosis and cell cycle in myeloma cells

Niknamian, S.

10.1101/497875 — cancer biology — Posted on 2018-12-16

1276 Gibbs Free Energy of Protein-Protein Interactions Correlates with ATP Production in Cancer Cells

Golas, S. M.; Nguyen, A. N.; Rietman, E. A.; Tuszynski, J. A.

10.1101/498121 — biophysics — Posted on 2018-12-16

1277 Circulating Metabolites in Progression to Islet Autoimmunity and Type 1 Diabetes

Lamichhane, S.; Kemppainen, E.; Trost, K.; Siljander, H.; Hyoty, H.; Ilonen, J.; Toppari, J.; Veijola, R.; Hyotylainen, T.; Knip, M.; Oresic, M.

10.1101/496943 — biochemistry — Posted on 2018-12-16

1278 Martini bead form factors for nucleic-acids and their application in the refinement of protein/nucleic-acid complexes against SAXS data

Paissoni, C.; Jussupow, A.; Camilloni, C.

10.1101/498147 — biochemistry — Posted on 2018-12-16

1279 Insoluble Aβ overexpression in an App knock-in mouse model alters microstructure and gamma oscillations in the prefrontal cortex, and social and anxiety-related behaviours

Pervolaraki, E.; Hall, S. P.; Foresteire, D.; Saito, T.; Saido, T.; Whittington, M. A.; Lever, C.; Dachtler, J.

10.1101/494443 — neuroscience — Posted on 2018-12-16

1280 NAD+ treatment can increase directly the antioxidant capacity of rotenone-treated differentiated PC12 cells

Zhang, J.; Hong, Y.; Cao, W.; Shi, H.; Ying, W.

10.1101/498162 — cell biology — Posted on 2018-12-16

1281 Conformational changes in Apolipoprotein N-acyltransferase (Lnt)

Wiseman, B.; Hogbom, M.

10.1101/497412 — biochemistry — Posted on 2018-12-16

1282 Do adolescents take more risks? Not when facing a novel uncertain situation

Elteto, N.; Janacsek, K.; Kobor, A.; Takacs, A.; Toth-Faber, E.; Nemeth, D.

10.1101/206128 — neuroscience — Posted on 2018-12-16

1283 Deconstructing Procedural Memory: Different Learning Trajectories and Consolidation of Sequence and Statistical Learning

Simor, P.; Zavecz, Z.; Horvath, K.; Elteto, N.; Torok, C.; Pesthy, O.; Gombos, F.; Janacsek, K.; Nemeth, D.

10.1101/216374 — neuroscience — Posted on 2018-12-16

1284 A Double Error Dynamic Asymptote Model of Associative Learning

Kokkola, N. H. B.; Mondragon, E.; Alonso, E.

10.1101/210674 — animal behavior and cognition — Posted on 2018-12-15

1285 Migration of gastric cancer is suppressed by rabies virus glycoprotein via regulating α7-nicotinic acetylcholine receptors/ERK-EMT

Bu, X.; Zhang, A.; Chen, Z.; Yin, C.; Zhang, X.; Zhang, R.; Zhang, Y.; Zhang, J.; Yan, Y.

10.1101/497362 — cancer biology — Posted on 2018-12-15

1286 Organizing principles of whole-brain functional connectivity in zebrafish larvae

Betzel, R.

10.1101/496414 — neuroscience — Posted on 2018-12-15

1287 SIRT2, ERK and Nrf2 mediate NAD+ treatment-induced increase in the antioxidant capacity of differentiated PC12 cells under basal conditions

Zhang, J.; Hong, Y.; Cao, W.; Shi, H.; Ying, W.

10.1101/497404 — cell biology — Posted on 2018-12-15

1288 Id proteins promote a cancer stem cell phenotype in triple negative breast cancer via Robo1-dependent c-Myc activation

Teo, W. S.; Cazet, A. S.; Roden, D. L.; Harvey, K.; K, N.; Holliday, H.; Konrad, C.; Murali, R.; Anu Varghese, B.; P T, A.; Dodson, E.; McFarland, A.; Junankar, S.; Ye, S.; Yang, J.; Nikolic, I.; Shah, J.; Baker, L.; Millar, E. K. A.; Naylor, M. J.; Ormandy, C. J.; Lakhani, S. R.; Kaplan, W.; Mellick, A.; O'Toole, S. A.; Nair, R.; Swarbrick, A.

10.1101/497313 — cancer biology — Posted on 2018-12-15

1289 Translocator Protein Localises To CD11b+ Macrophages In Atherosclerosis

Kopecky, C.; Pandzic, E.; Parmar, A.; Szajer, J.; Lee, V.; Dupuy, A.; Arthur, A.; Fok, S.; Whan, R.; Ryder, W. J.; Rye, K.-A.; Cochran, B. J.

10.1101/494377 — pathology — Posted on 2018-12-15

1290 Enhancer priming enables fast and sustained transcriptional responses to Notch signaling

Falo-Sanjuan, J.; Lammers, N. C.; Garcia, H. G.; Bray, S.

10.1101/497651 — developmental biology — Posted on 2018-12-15

1291 Imbalanced Nucleocytoskeletal Connections Create Common Polarity Defects in Progeria and Physiological Aging

Chang, W.; Wang, Y.; Luxton, G. W. G.; Ostlund, C.; Worman, H. J.; Gundersen, G. G.

10.1101/497297 — cell biology — Posted on 2018-12-15

1292 PTBP2-dependent alternative splicing regulates protein transport and mitochondria morphology in post-meiotic germ cells.

Hannigan, M. M.; Fujioka, H.; Brett-Morris, A.; Mears, J. A.; Licatalosi, D. D.

10.1101/497461 — developmental biology — Posted on 2018-12-15

1293 Dynamics of Notch-dependent transcriptional bursting in its native context

Lee, C.; Shin, H.; Kimble, J.

10.1101/496638 — cell biology — Posted on 2018-12-15

1294 Tonotopy of the mammalian cochlea is associated with stiffness and tension gradients of the hair cell’s tip-link complex

Tobin, M.; Michel, V.; Michalski, N.; Martin, P.

10.1101/497222 — biophysics — Posted on 2018-12-15

1295 The Immune Deficiency Pathway Regulates Metabolic Homeostasis in Drosophila.

Davoodi, S.; Galenza, A.; Panteluk, A.; Deshpande, R.; Ferguson, M.; Grewal, S.; Foley, E.

10.1101/253542 — immunology — Posted on 2018-12-14

1296 International travelers and genomics uncover a ‘hidden’ Zika outbreak

Grubaugh, N.; Saraf, S.; Gangavarapu, K.; Watts, A.; Tan, A. L.; Oidtman, R.; Ladner, J. T.; Oliveira, G.; Matteson, N. L.; Kraemer, M. U.; Vogels, C. B.; Hentoff, A.; Bhatia, D.; Stanek, D.; Scott, B.; Landis, V.; Stryker, I.; Cone, M.; Kopp, E.; Cannons, A.; Heberlein-Larson, L.; White, S.; Gillis, L.; Ricciardi, M.; Kwai, J.; Lichtenberger, P.; Magnani, D.; Watkins, D.; Palacios, G.; Hamer, D. H.; GeoSentinel Surveillance Network, ; Gardner, L.; Perkins, T. A.; Baele, G.; Khan, K.; Morrison, A.; Isern, S.; Michael, S. F.; Andersen, K. G.

10.1101/496901 — epidemiology — Posted on 2018-12-14

1297 Disruption of IRE1α through its Kinase Domain Attenuates Multiple Myeloma

Harnoss, J. M.; Le Thomas, A.; Marsters, S. A.; Lawrence, D. A.; Lu, M.; Chen, Y.-C. A.; Qing, J.; Totpal, K.; Kan, D.; Segal, E.; Ackerly Wallweber, H.; Wang, W.; Clark, K.; Kaufman, S.; Beresini, M.; Sandoval, W.; Lorenzo, M.; Wu, J.; Ly, J.; De Bruyn, T.; Heidersbach, A.; Haley, B.; Gogineni, A.; Weimer, R.; Lee, D.; Braun, M.-G.; Rudolph, J.; VanWyngarden, M. J.; Sherbenou, D. W.; Gomez-Bougie, P.; Amiot, M.; Acosta-Alvear, D.; Walter, P.; Ashkenazi, A.

10.1101/495242 — cancer biology — Posted on 2018-12-14

1298 Selene: a PyTorch-based deep learning library for biological sequence-level data

Chen, K. M.; Cofer, E. M.; Zhou, J.; Troyanskaya, O. G.

10.1101/438291 — bioinformatics — Posted on 2018-12-14

1299 Perception is shaped along the (L+M)-S axis (and possibly confused with a memory color effect)

Adeyefa-Olasupo, I.-E.

10.1101/490888 — animal behavior and cognition — Posted on 2018-12-14

1300 CancerInSilico: An R/Bioconductor package for combining mathematical and statistical modeling to simulate time course bulk and single cell gene expression data in cancer

Sherman, T. D.; Kagohara, L. T.; Cao, R.; Cheng, R.; Satriano, M.; Considine, M.; Krigsfeld, G.; Ranaweera, R.; Tang, Y.; Jablonski, S.; Stein-O'Brien, G.; Gaykalova, D.; Weiner, L. M.; Chung, C.; Fertig, E.

10.1101/328807 — systems biology — Posted on 2018-12-14

1301 RACER: A data visualization strategy for exploring multiple genetic associations

Sabik, O. L.; Farber, C. R.

10.1101/495366 — genetics — Posted on 2018-12-14

1302 Macroevolutionary bursts and constraints generate a rainbow in a clade of tropical birds

Merwin, J. T.; Smith, B. T.; Seeholzer, G. F.

10.1101/489419 — evolutionary biology — Posted on 2018-12-14

1303 In a temporally segmented experience hippocampal neurons represent temporally drifting context but not discrete segments.

Bladon, J. H.; Sheehan, D. J.; De Freitas, C. S.; Howard, M. W.

10.1101/338962 — animal behavior and cognition — Posted on 2018-12-14

1304 Heterochromatin Interactions Maintain Homologous Centromere Associations in Mouse Spermatocyte Meiosis

Chuong, H. H.; Eyster, C.; Lee, C.-Y.; Pezza, R.; Dawson, D.

10.1101/264432 — cell biology — Posted on 2018-12-14

1305 WNT vampirization by glioblastoma leads to tumor growth and neurodegeneration

Portela Esteban, M.; Venkataramani, V.; Fahey-Lozano, N.; Seco, E.; Losada-Perez, M.; Winkler, F.; Casas-Tinto, S.

10.1101/428953 — cell biology — Posted on 2018-12-14

1306 Spectral Contrast Optical Coherence Tomography Angiography Enables Single-Scan Vessel Imaging

Winkelmann, J.; Eid, A.; Spicer, G.; Almassalha, L. M.; Nguyen, T.-Q.; Backman, V.

10.1101/406652 — biophysics — Posted on 2018-12-14

1307 DeepTCR: a deep learning framework for revealing structural concepts within TCR Repertoire

Sidhom, J.-W.; Larman, H. B.; Pardoll, D. M.; Baras, A. S.

10.1101/464107 — bioinformatics — Posted on 2018-12-14

1308 Distinct cortical-amygdala projections drive reward value encoding and retrieval

Malvaez, M.; Shieh, C.; Murphy, M. D.; Greenfield, V. Y.; Wassum, K. M.

10.1101/299958 — neuroscience — Posted on 2018-12-14

1309 Motor cortex is an input-driven dynamical system controlling dexterous movement

Sauerbrei, B.; Guo, J.-Z.; Mischiati, M.; Guo, W.; Kabra, M.; Verma, N.; Branson, K.; Hantman, A.

10.1101/266320 — neuroscience — Posted on 2018-12-14

1310 The Immune Deficiency Pathway Regulates Metabolic Homeostasis in Drosophila.

Davoodi, S.; Galenza, A.; Panteluk, A.; Deshpande, R.; Ferguson, M.; Grewal, S.; Foley, E.

10.1101/253542 — immunology — Posted on 2018-12-14

1311 ERVcaller: Identify polymorphic endogenous retrovirus (ERV) and other transposable element (TE) insertions using whole-genome sequencing data

Chen, X.; Li, D.

10.1101/332833 — bioinformatics — Posted on 2018-12-14

1312 The cortico-striatal circuit regulates sensorimotor gating via Disc1/Huntingtin-mediated Bdnf transport

Jaaro-Peled, H.; Kumar, S.; Hughes, D.; Kim, S.-H.; Zoubovsky, S.; Hirota-Tsuyada, Y.; Zala, D.; Sumitomo, A.; Bruyere, J.; Katz, B. M.; Huang, B.; Flores, R.; Narayan, S.; Hou, Z.; Economides, A. N.; Hikida, T.; Wetsel, W. C.; Deisseroth, K.; Mori, S.; Brandon, N. J.; Tanaka, M.; Ishizuka, K.; Houslay, M. D.; Saudou, F.; Dzirasa, K.; Sawa, A.; Tomoda, T.

10.1101/497446 — neuroscience — Posted on 2018-12-14

1313 Transcriptional logic of cell fate specification and axon guidance in early born retinal neurons revealed by single-cell mRNA profiling

Lo Giudice, Q.; Leleu, M.; Fabre, P. J.

10.1101/497081 — developmental biology — Posted on 2018-12-14

1314 Single cell RNA-Seq reveals distinct stem cell populations that drive sensory hair cell regeneration in response to loss of Fgf and Notch signaling

Lush, M. E.; Diaz, D. C.; Koenecke, N.; Baek, S.; Boldt, H.; St. Peter, M. K.; Gaitan-Escudero, T.; Romero-Carvajal, A.; Busch-Nentwich, E.; Perera, A.; Hall, K.; Peak, A.; Haug, J. S.; Piotrowski, T.

10.1101/496612 — developmental biology — Posted on 2018-12-14

1315 Physiological and transcriptome analysis of indica rice ‘MH86’ overexpressing OsSPL14

Lian, L.; He, W.; Cai, Q. h.; Zhang, H.; Ren, C. r.; Ding, J.; Xu, H. b.; Lin, Y. l.; Pan, L. y.; Wei, Y. d.; Zhu, Y. s.; Zheng, Y. m.; Wei, L. y.; Xie, H. g.; Wang, Z. h.; Xie, H. a.; Zhang, J. f.

10.1101/496620 — physiology — Posted on 2018-12-14

1316 Detecting modifications in proteomics experiments with Param-Medic

May, D.; Tamura, K.; Noble, W.

10.1101/496349 — bioinformatics — Posted on 2018-12-14

1317 The first reliable autochthonous case of ticks-borne encephalitis infection and detection of tick-borne encephalitis virus in Ixodes ricinus ticks and their hosts in an urban park of Moscow, Russia

Makenov, M. T.; Karan, L. S.; Shashina, N. I.; Akhmetshina, M. B.; Zhurenkova, O. B.; Kholodilov, I. S.; Karganova, G. G.; Smirnova, N. S.; Fyodorova, M. V.; Grigoreva, Y. E.; Yankovskaya, Y. D.

10.1101/480475 — epidemiology — Posted on 2018-12-14

1318 Spatiotemporal Variability in Dengue Transmission Intensity in Jakarta, Indonesia

O'Driscoll, M.; Imai, N.; Ferguson, N. M.; Rezeki Hadinegoro, S.; Satari, H.; Tam, C. C.; Dorigatti, I.

10.1101/496448 — epidemiology — Posted on 2018-12-14

1319 International travelers and genomics uncover a ‘hidden’ Zika outbreak

Grubaugh, N.; Saraf, S.; Gangavarapu, K.; Watts, A.; Tan, A. L.; Roidtman, R.; Ladner, J. T.; Oliveira, G.; Matteson, N. L.; Kraemer, M. U.; Vogels, C. B.; Hentoff, A.; Bhatia, D.; Stanek, D.; Scott, B.; Landis, V.; Stryker, I.; Cone, M.; Kopp, E.; Cannons, A.; Heberlein-Larson, L.; White, S.; Gillis, L.; Ricciardi, M.; Kwai, J.; Lichtenberger, P.; Magnani, D.; Watkins, D.; Palacios, G.; Hamer, D. H.; GeoSentinel Surveillance Network, ; Gardner, L.; Perkins, T. A.; Baele, G.; Khan, K.; Morrison, A.; Isern, S.; Michael, S. F.; Andersen, K. G.

10.1101/496901 — epidemiology — Posted on 2018-12-14

1320 Optimizing the use of the Men-ACWY conjugated vaccine to control the developing meningococcal W disease outbreak in the Netherlands, a rapid analysis.

van Hoek, A. J.; Knol, M.; de Melker, H.; Wallinga, J.

10.1101/494492 — epidemiology — Posted on 2018-12-14

1321 Scalable probabilistic matrix factorization for single-cell RNA-seq analysis

Ferreira, P. F.; Carvalho, A. M.; Vinga, S.

10.1101/496810 — bioinformatics — Posted on 2018-12-14

1322 Reading eye movements in traumatic brain injury

Reddy, A. V. C.; Mani, R.; Selvakumar, A.; Husaindeen, J. R.

10.1101/496752 — neuroscience — Posted on 2018-12-14

1323 Stable Genetic Transformation and Heterologous Expression in the Nitrogen-fixing Plant Endosymbiont Frankia alni ACN14a

Gifford, I.; Vance, S.; Nguyen, G.; Berry, A. M.

10.1101/496703 — microbiology — Posted on 2018-12-14

1324 An integrated genome-wide multi-omics analysis of gene expression dynamics in the preimplantation mouse embryo

Israel, S.; Ernst, M.; Psathaki, O.; Drexler, H. C. A.; Casser, E.; Suzuki, Y.; Makalowski, W.; Boiani, M.; Fuellen, G.; Taher, L.

10.1101/495788 — developmental biology — Posted on 2018-12-14

1325 Homogenous subgroups of atypical meningiomas defined using oncogenic signatures: basis for a new grading system?

Zador, Z.; Landry, A.; Saha, A.; Cusimano, M.

10.1101/493031 — cancer biology — Posted on 2018-12-14

1326 A novel computational complete deconvolution method using RNA-seq data

Kang, K.; Meng, Q.; Shats, I.; Umbach, D. M.; Li, M.; Li, Y.; Li, X.; Li, L.

10.1101/496596 — bioinformatics — Posted on 2018-12-14

1327 Rapid Determination of Antibiotic Susceptibility by Stimulated Raman Scattering Imaging of D2O Metabolism

Hong, W.; Cheng, J.-X.

10.1101/496778 — microbiology — Posted on 2018-12-14

1328 Refining the pneumococcal competence regulon by RNA-sequencing

Slager, J.; Aprianto, R.; Veening, J.-W.

10.1101/497099 — microbiology — Posted on 2018-12-14

1329 Anchorene is an endogenous diapocarotenoid required for anchor root formation in Arabidopsis

Jia, K.; Dickinson, A. J.; Mi, J.; Cui, G.; Kharbatia, N. M.; Guo, X.; Sugiono, E.; Aranda, M.; Rueping, M.; Benfey, P. N.; Al-Babili, S.

10.1101/496737 — plant biology — Posted on 2018-12-14

1330 Optogenetic stimulation of long-range inputs and functional characterization of connectivity in patch-clamp recordings in mouse brain slices

Richevaux, L.; Schenberg, L.; Beraneck, M.; Fricker, D.

10.1101/491563 — neuroscience — Posted on 2018-12-14

1331 Maladaptive coping strategies and neuroticism mediate the relationship between 5HTT-LPR polymorphisms and symptoms of anxiety in elite athletes.

Altamura, M.; Iuso, S.; D'Andrea, G.; D'Urso, F.; Piccininni, C.; Angelini, E.; Francesco, S.; Margaglione, M.; Padulo, C.; Fairfield, B.; Petito, A.; Bellomo, A.

10.1101/493320 — neuroscience — Posted on 2018-12-14

1332 Analysing linear multivariate pattern transformations in neuroimaging data

Basti, A.; Mur, M.; Kriegeskorte, N.; Pizzella, V.; Marzetti, L.; Hauk, O.

10.1101/497180 — neuroscience — Posted on 2018-12-14

1333 Interleukin-36 promotes systemic Type-I IFN responses in severe psoriasis.

Catapano, M.; Vergnano, M.; Romano, M.; Mahil, S. K.; Choon, S.-E.; Burden, D. A.; Young, H. S.; Carr, I. M.; Lachmann, H. J.; Lombardi, G.; Smith, C.; Ciccarelli, F. D.; Barker, J. N.; Capon, F.

10.1101/496851 — immunology — Posted on 2018-12-14

1334 Phase transition and amyloid formation by a viral protein as an additional molecular mechanism of virus-induced cell toxicity

Salladini, E.; Debarnot, C.; Delauzun, V.; Murrali, M.-G.; Sutto-Ortiz, P.; Spinelli, S.; Pierattelli, R.; Bignon, C.; Longhi, S.

10.1101/497024 — biophysics — Posted on 2018-12-14

1335 Cytokit: A single-cell analysis toolkit for high dimensional fluorescent microscopy imaging

Czech, E.; Aksoy, B. A.; Aksoy, P.; Hammerbacher, J.

10.1101/460980 — bioinformatics — Posted on 2018-12-14

1336 RACER: A data visualization strategy for exploring multiple genetic associations

Sabik, O.; Farber, C.

10.1101/495366 — genetics — Posted on 2018-12-14

1337 Functionally Coherent Transcription Factor Target Networks Illuminate Control of Epithelial Remodelling and Oncogenic Notch

Overton, I. M.; Sims, A. H.; Owen, J. A.; Heale, B.; Ford, M. J.; Lubbock, A. L. R.; Pairo-Castineira, E.; Essafi, A.

10.1101/455709 — systems biology — Posted on 2018-12-14

1338 ECT2 associated to PRICKLE1 are poor-prognosis markers in triple-negative breast cancer

Daulat, A.; Finetti, P.; Revinski, D.; Wagner, M. S.; Camoin, L.; Audebert, S.; Birnbaum, D.; Kodjabachian, L.; Borg, J.-P.; Bertucci, F.

10.1101/496026 — cancer biology — Posted on 2018-12-14

1339 Exploration in the wild

Schulz, E.; Bhui, R.; Love, B. C.; Brier, B.; Todd, M. T.; Gershman, S. J.

10.1101/492058 — animal behavior and cognition — Posted on 2018-12-14

1340 A Universal Temperature-Dependence of Mutational Fitness Effects

Berger, D.; Stangberg, J.; Baur, J.; Walters, R. J.

10.1101/268011 — evolutionary biology — Posted on 2018-12-14

1341 ‘Chromatic’ Neuronal Jamming in a Primitive Brain

Khariton, M.; Kong, X.; Qin, J.; Wang, B.

10.1101/496745 — biophysics — Posted on 2018-12-14

1342 Variants in regulatory elements of PDE4D associate with Major Mental Illness in the Finnish population

Sinha, V.; Ukkola-Vuoti, L.; Ortega-Alonso, A.; Torniainen-Holm, M.; Therman, S.; Tuulio-Henriksson, A.; Jylhä, P.; Kaprio, J.; Hovatta, I.; Isometsä, E.; Cannon, T. D.; Lonnqvist, J.; Paunio, T.; Suvisaari, J.; Hennah, W.

10.1101/390518 — genetics — Posted on 2018-12-14

1343 The return of the trophic chain: fundamental vs realized interactions in a simple arthropod food web

Torres-Campos, I.; Magalhaes, S.; Moya-Larano, J.; Montserrat, M.

10.1101/324178 — ecology — Posted on 2018-12-14

1344 Generative modeling and latent space arithmetics predict single-cell perturbation response across cell types, studies and species

Lotfollahi, M.; Wolf, F. A.; Theis, F. J.

10.1101/478503 — bioinformatics — Posted on 2018-12-14

1345 Gut microbiome response to a modern Paleolithic diet in a Western lifestyle context

Barone, M.; Turroni, S.; Rampelli, S.; Soverini, M.; D'Amico, F.; Biagi, E.; Brigidi, P.; Troiani, E.; Candela, M.

10.1101/494187 — microbiology — Posted on 2018-12-14

1346 E74 like ETS transcription factor 3 (ELF3) is a negative regulator of epithelial-mesenchymal transition in bladder carcinoma

Gondkar, K.; Patel, K.; Krishnappa, S.; Patil, A.; Nair, B.; Meenakshi Sundaram, G.; Tuan Zea, T.; Kumar, P.

10.1101/496646 — cancer biology — Posted on 2018-12-14

1347 Genome wide screen reveals a specific interaction between autosome and X that is essential for hybrid male sterility

Zhao, Z.; Bi, Y.; Ren, X.; Li, R.; Ding, Q.; Xie, D.

10.1101/496976 — evolutionary biology — Posted on 2018-12-14

1348 Lower hemoglobin levels associate with lower body mass index and healthier metabolic profile

Auvinen, J.; Tapio, J.; Karhunen, V.; Kettunen, J.; Serpi, R.; Dimova, E. Y.; Soininen, P.; Tammelin, T.; Mykkanen, J.; Puukka, K.; Kahonen, M.; Raitoharju, E.; Lehtimaki, T.; Ala-Korpela, M.; Raitakari, O. T.; Keinanen-Kiukaanniemi, S.; Jarvelin, M.-R.; Koivunen, P.

10.1101/472142 — epidemiology — Posted on 2018-12-14

1349 Intraspecific variation promotes trait clustering and species coexistence through higher-order interactions.

Baruah, G.; John, R.

10.1101/494757 — ecology — Posted on 2018-12-14

1350 CBX2 is required during male sex determination to repress female fate at bivalent loci

Garcia-Moreno, S. A.; Lin, Y.-T.; Futtner, C.; Salamone, I.; Maatouk, D.; Capel, B.

10.1101/496984 — developmental biology — Posted on 2018-12-14

1351 Using a diabetes discussion forum and Wikipedia to detect the alignment of public interests and the research literature

Didegah, F.; Ghaseminik, Z.; Alperin, J. P.

10.1101/496927 — scientific communication and education — Posted on 2018-12-14

1352 Soil salinity inhibits plant shade avoidance

Hayes, S.; Pantazopoulou, C. K.; Tween, A. L.; van Gelderen, K.; Reinen, E.; de Vries, M.; Prat, S.; Schuurink, R.; Testerink, C.; Pierik, R.

10.1101/289124 — plant biology — Posted on 2018-12-14

1353 Detection of task-relevant and task-irrelevant motion sequences: application to motor adaptation in goal-directed and whole-body movements

Furuki, D.; Takiyama, K.

10.1101/339648 — neuroscience — Posted on 2018-12-14

1354 Decades of native bee biodiversity surveys at Pinnacles National Park highlight the importance of monitoring natural areas over time

Meiners, J.; Griswold, T. L.; Carril, O. M.

10.1101/462986 — ecology — Posted on 2018-12-14

1355 CardiacProfileR: An R package for extraction and visualisation of heart rate profiles from wearable fitness trackers

Djordjevic, D.; Cawood, B. K.; Rispin, S. K.; Shah, A.; Yim, L. H. H.; Hayward, C. S.; Ho, J. W. K.

10.1101/324004 — bioinformatics — Posted on 2018-12-14

1356 Optimization of accelerated solvent extraction of fatty acids from Coix seeds using chemometrics methods

Liu, X.; Fan, K.; Song, W.-G.; Wang, Z.

10.1101/496935 — biochemistry — Posted on 2018-12-14

1357 Exploration in the wild

Schulz, E.; Bhui, R.; Love, B. C.; Brier, B.; Todd, M. T.; Gershman, S. J.

10.1101/492058 — animal behavior and cognition — Posted on 2018-12-14

1358 Synonymous SNPs of viral genes facilitate virus to escape host antiviral RNAi immunity

Zhang, X.; Sun, Y.; Zhang, Y.

10.1101/496992 — pathology — Posted on 2018-12-14

1359 Sign-Consistency Based Variable Importance For Machine Learning In Brain Imaging

Gomez-Verdejo, V.; Parrado-Hernandez, E.; Tohka, J.

10.1101/124453 — neuroscience — Posted on 2018-12-14

1360 Metagenomic 16S rRNA gene sequencing survey of Borrelia species in Irish samples of Ixodes ricinus ticks

Lambert, J. S.; Cook, M. J.; Healy, J. E.; Murtagh, R.; Avramovic, G.; Lee, S. H.

10.1101/496950 — microbiology — Posted on 2018-12-14

1361 Intake of red and processed meat, use of non-steroid anti-inflammatory drugs, genetic variants and risk of colorectal cancer; a prospective study of the Danish \"Diet, Cancer and Health\" cohort

Andersen, V.; Halekoh, U.; Tjonneland, A.; Vogel, U.; Kopp, T. I.

10.1101/496968 — genetics — Posted on 2018-12-14

1362 Prevalence, Characteristics, and Clinical Significance of Concomitant Cardiomyopathies in Subjects with Bicuspid Aortic Valve

Jeong, H.; Shim, C. Y.; Kim, D.; Choi, J. Y.; Choi, K.-U.; Lee, S. Y.; Hong, G.-R.; Ha, J.-W.

10.1101/496919 — epidemiology — Posted on 2018-12-14

1363 Development of oocytes in a post-spawning Japanese eel Anguilla japonica Temminck & Schlegel in captivity

Tanaka, S.; Okamura, A.; Mikawa, N.; Yamada, Y.; Horie, N.; Utoh, T.; Zhang, H.; Oka, H. P.; Tsukamoto, K.

10.1101/494435 — zoology — Posted on 2018-12-13

1364 Electron cryo-tomography of vestibular hair-cell stereocilia

Metlagel, Z.; Krey, J. F.; Song, J.; Swift, M. F.; Tivol, W. J.; Dumont, R. A.; Thai, J.; Chang, A.; Seifikar, H.; Volkmann, N.; Hanein, D.; Barr-Gillespie, P. G.; Auer, M.

10.1101/496513 — neuroscience — Posted on 2018-12-13

1365 Uncultured marine cyanophages encode for active NblA, phycobilisome proteolysis adaptor protein

Nadel, O.; Rozenberg, A.; Flores-Uribe, J.; Larom, S.; Schwarz, R.; Beja, O.

10.1101/494369 — microbiology — Posted on 2018-12-13

1366 Salience Network Disruption in US Army Soldiers with PTSD

Abdallah, C.; Averill, C.; Ramage, A.; Averill, L.; Goktas, S.; Krystal, J.; Roache, J.; Resick, P.; Young-McCaughan, S.; Peterson, A.; Fox, P.

10.1101/496505 — neuroscience — Posted on 2018-12-13

1367 Incubation of discriminative stimulus-controlled cocaine craving: An animal model relevant to relapse prevention

Madangopal, R.; Tunstall, B. J.; Komer, L. E.; Weber, S. J.; Hoots, J. K.; Lennon, V. A.; Bossert, J. M.; Epstein, D. H.; Shaham, Y.; Hope, B. T.

10.1101/494070 — neuroscience — Posted on 2018-12-13

1368 Early Visual Experience Shapes Binocularity in the Mouse Thalamocortical Pathway

Huh, C. Y. L.; Abdelaal, K.; Salinas, K. J.; Gu, D.; Zeitoun, J.; Figueroa Velez, D. X.; Peach, J. P.; Fowlkes, C. C.; Gandhi, S. P.

10.1101/484774 — neuroscience — Posted on 2018-12-13

1369 Metabolic proof-reading in Plasmodium berghei: essentiality of phosphoglycolate phosphatase

Nagappa, L. K.; Satha, P.; Govindaraju, T.; Balaram, H.

10.1101/495473 — biochemistry — Posted on 2018-12-13

1370 The Time Course of Recognition Memory Impairment and Glial Pathology in the hApp-J20 Mouse Model of Alzheimer’s Disease

Ameen-Ali, K. E.; Simpson, J. E.; Wharton, S. B.; Heath, P. R.; Sharp, P.; Brezzo, G.; Berwick, J.

10.1101/495960 — neuroscience — Posted on 2018-12-13

1371 A framework for disentangling ecological mechanisms underlying the island species-area relationship

Chase, J. M.; Gooriah, L.; May, F.; Ryberg, W. A.; Schuler, M.; Craven, D.; Knight, T.

10.1101/410126 — ecology — Posted on 2018-12-13

1372 Rare variants imputation in admixed populations: Comparison across reference panels and bioinformatics tools.

Sariya, S.; Lee, J.; Mayeux, R.; Vardarajan, B. N.; Reyes-Dumeyer, D.; Manly, J.; Brickman, A.; Lantigua, R.; Medrano, M.; Jimenez-Velazquez, I. Z.; Tosto, G.

10.1101/494229 — bioinformatics — Posted on 2018-12-13

1373 Neural dynamics of accumulating and updating linguistic knowledge structures

Berkers, R. M. W. J.; van der Linden, M.; Neville, D. A.; van Kesteren, M. T. R.; Morris, R. G. M.; Murre, J. M. J.; Fernandez, G.

10.1101/495168 — neuroscience — Posted on 2018-12-13

1374 The clarifying role of time series data in the population genetics of HIV

Feder, A. F.; Pennings, P. S.; Petrov, D. A.

10.1101/495275 — evolutionary biology — Posted on 2018-12-13

1375 RAD-sequencing for estimating GRM-based heritability in the wild: a case study in roe deer

Gervais, L.; Perrier, C.; Bernard, M.; Merlet, J.; Pemberton, J. M.; Pujol, B.; Quemere, E.

10.1101/496083 — genomics — Posted on 2018-12-13

1376 mtDNA eQTLs and the m1A 16S rRNA modification explain mtDNA tissue-specific gene expression pattern in humans

Cohen, T.; Mordechai, C.; Eran, A.; Mishmar, D.

10.1101/495838 — genomics — Posted on 2018-12-13

1377 Drought frequency predicts life history strategies in Heliophila

Monroe, J. G.; Gill, B.; Turner, K.; McKay, J. K.

10.1101/493270 — evolutionary biology — Posted on 2018-12-13

1378 Metabolic proof-reading in Plasmodium berghei: essentiality of phosphoglycolate phosphatase

Nagappa, L. K.; Satha, P.; Govindaraju, T.; Balaram, H.

10.1101/495473 — biochemistry — Posted on 2018-12-13

1379 Separate Compartments for Chromosome Entrapment and DNA Binding during SMC translocation

Vazquez Nunez, R.; Ruiz Avila, L. B.; Gruber, S.

10.1101/495820 — biochemistry — Posted on 2018-12-13

1380 Differentiation of mild cognitive impairment using an entorhinal cortex-based test of VR navigation

Howett, D.; Castegnaro, A.; Krzywicka, K.; Hagman, J.; Henson, R. N.; Rio, M.; King, J.; Burgess, N.; Chan, D.

10.1101/495796 — neuroscience — Posted on 2018-12-13

1381 New insights from 22-kHz ultrasonic vocalizations to characterize fear responses: relationship with respiration and brain oscillatory dynamics

Dupin, M.; Garcia, S.; Boulanger-Bertolus, J.; Buonviso, N.; MOULY, A.-M.

10.1101/494872 — neuroscience — Posted on 2018-12-13

1382 Not Just A Number: Age-Related Modulations of Oscillatory Patterns Underlying Top-Down and Bottom-Up Attention.

ElShafei, H.; Fornoni, L.; Bertrand, O.; Bidet-Caulet, A.

10.1101/496117 — neuroscience — Posted on 2018-12-13

1383 In trans variant calling reveals enrichment for compound heterozygous variants in genes involved in neuronal development and growth.

Cox, A. J.; Grady, F.; Velez, G.; Mahajan, V. B.; Ferguson, P. J.; Kitchen, A.; Darbro, B. W.; Bassuk, A. G.

10.1101/496133 — neuroscience — Posted on 2018-12-13

1384 Snf2 controls pulcherriminic acid biosynthesis and connects pigmentation and antifungal activity of the yeast Metschnikowia pulcherrima

Gore-Lloyd, D.; Sumann, I.; Brachmann, A. O.; Schneeberger, K.; Ortiz-Merino, R. A.; Moreno-Beltran, M.; Schlaefli, M.; Kirner, P.; Santos Kron, A.; Wolfe, K. H.; Piel, J.; Ahrens, C. H.; Henk, D.; Freimoser, F. M.

10.1101/494922 — microbiology — Posted on 2018-12-13

1385 Antibiotic usage promotes the evolution of resistance against gepotidacin, a novel multi-targeting drug

Szili, P.; Draskovits, G.; Revesz, T.; Bogar, F.; Balogh, D.; Martinek, T.; Daruka, L.; Spohn, R.; Vasarhelyi, B. M.; Czikkely, M.; Kintses, B.; Grezal, G.; Ferenc, G.; Pal, C.; Nyerges, A.

10.1101/495630 — microbiology — Posted on 2018-12-13

1386 Environmental disorder can tip the population genetics of range expansions

Gralka, M.; Hallatschek, O.

10.1101/494955 — evolutionary biology — Posted on 2018-12-13

1387 Selection for synchronized replication of genes encoding the same protein complex during tumorigenesis

Chen, Y.; Li, K.; Chu, X.; Carey, L. B.; Qian, W.

10.1101/496059 — evolutionary biology — Posted on 2018-12-13

1388 Consistent alterations of human fecal microbes after transplanted to germ-free mice

Chen, W.-H.; Li, Y.; Cao, W.; Gao, N. L.; Zhao, X.-M.

10.1101/495663 — bioinformatics — Posted on 2018-12-13

1389 The Bellerophon pipeline, improving de novo transcriptomes and removing chimeras

Kerkvliet, J.; de Fouchier, A.; van Wijk, M.; Groot, A. T.

10.1101/495754 — bioinformatics — Posted on 2018-12-13

1390 Perception is shaped along the (L+M)/S axis (and possibly confused with a memory color effect)

Adeyefa-Olasupo, I.-E.

10.1101/490888 — animal behavior and cognition — Posted on 2018-12-13

1391 Distinct ipRGC subpopulations mediate light’s acute and circadian effects on body temperature and sleep

Rupp, A. C.; Ren, M.; Altimus, C.; Fernandez, D.; Richardson, M.; Turek, F.; Hattar, S.; Schmidt, T. M.

10.1101/496323 — neuroscience — Posted on 2018-12-13

1392 Compensation Related Utilization of Neural Circuits Hypothesis Model in Response Inhibition in Premanifest Huntington’s Disease

Soloveva, M. V.; Jamadar, S. D.; Hughes, M.; Velakoulis, D.; Poudel, G.; Georgiou-Karistianis, N.

10.1101/495416 — neuroscience — Posted on 2018-12-13

1393 Reliability of the correlative triad among aging, dopamine D2-like receptor availability, and cognition

Juarez, E. J.; Castrellon, J. J.; Green, M. A.; Crawford, J. L.; Seaman, K. L.; Smith, C. T.; Dang, L. C.; Matuskey, D.; Morris, E. D.; Cowan, R. L.; Zald, D. H.; Samanez-Larkin, G. R.

10.1101/494765 — neuroscience — Posted on 2018-12-13

1394 Eigenvector centrality mapping for ultrahigh resolution fMRI data of the human brain

Lohmann, G.; Loktyushin, A.; Stelzer, J.; Scheffler, K.

10.1101/494732 — neuroscience — Posted on 2018-12-13

1395 Human visual cortex is organized along two genetically opposed hierarchical gradients with unique developmental and evolutionary origins

Gomez, J.; Zhen, Z.; Weiner, K.

10.1101/495143 — neuroscience — Posted on 2018-12-13

1396 RACER: a data visualization strategy for exploring the comparison between regional association from multiple datasets

Sabik, O.; Farber, C.

10.1101/495366 — genetics — Posted on 2018-12-13

1397 Genealogical distances under low levels of selection

Huss, E.; Pfaffelhuber, P.

10.1101/495770 — evolutionary biology — Posted on 2018-12-13

1398 Disease and introgression explain the long-lasting contact zone of Modern Humans and Neanderthals and its eventual destabilization

Greenbaum, G.; Getz, W. M.; Rosenberg, N. A.; Feldman, M. W.; Hovers, E.; Kolodny, O.

10.1101/495515 — evolutionary biology — Posted on 2018-12-13

1399 Spatiophylogenetic modelling of extinction risk reveals evolutionary distinctiveness and brief flowering period as risk factors in a diverse hotspot plant genus

Dinnage, R.; Skeels, A.; Cardillo, M.

10.1101/496547 — ecology — Posted on 2018-12-13

1400 SeQuiLa-cov: A fast and scalable library for depth of coverage calculations

Wiewiorka, M.; Szmurlo, A.; Kusmirek, W.; Gambin, T.

10.1101/494468 — bioinformatics — Posted on 2018-12-13

1401 The impact of stroma on the discovery of molecular subtypes and prognostic gene signatures in serous ovarian cancer

Schwede, M.; Waldron, L.; Mok, S. C.; Wei, W.; Basunia, A.; Merritt, M. A.; Parmigiani, G.; Harrington, D.; Quackenbush, J.; Birrer, M. J.; Culhane, A.

10.1101/496406 — bioinformatics — Posted on 2018-12-13

1402 To cure or not to cure: consequences of immunological interactions in CML treatment

Cesar Fassoni, A.; Roeder, I.; Glauche, I.

10.1101/494575 — systems biology — Posted on 2018-12-13

1403 Automated Seizure Detection Tailored Towards Portable Patient Care Using A Novel, Computationally Efficient Method of Analysis

Huang, Z.; Ying, Y.

10.1101/495572 — neuroscience — Posted on 2018-12-13

1404 CHANCE: a method that enables a researcher to fully know the content of consciousness of a subject in scientific experiments

Tanaka, D. H.; Tanabe, T.

10.1101/495523 — neuroscience — Posted on 2018-12-13

1405 Inference of Nonlinear Spatial Subunits by Spike-Triggered Clustering in Primate Retina

Shah, N. P.; Brackbill, N.; Rhoades, C. E.; Tikidji-Hamburyan, A.; Goetz, G.; Litke, A.; Sher, A.; Simoncelli, E. P.; Chichilnisky, E. J.

10.1101/496422 — neuroscience — Posted on 2018-12-13

1406 Target-detecting neurons in the dragonfly lock on to selectively attended targets

Lancer, B. H.; Evans, B. J. E.; Fabian, J. M.; O'Carroll, D. C.; Wiederman, S. D.

10.1101/496562 — neuroscience — Posted on 2018-12-13

1407 Role of Innate-like Lymphocytes in the Pathogenesis of Community Acquired Pneumonia

Hannaway, R. F.; Wang, X.; Schneider, M.; Slow, S.; Schofield, M. R.; Morgan, X. C.; Murdoch, D. R.; Ussher, J. E.

10.1101/495556 — immunology — Posted on 2018-12-13

1408 An integrated model of population genetics and community ecology

Overcast, I.; Emerson, B.; Hickerson, M. J.

10.1101/496125 — evolutionary biology — Posted on 2018-12-13

1409 Biophysical and physiological causes of coral reef microbialization

Silveira, C. B.; Roach, T. N. F.; Villela, H.; Barno, A.; Reyes, B.; Rubio-Portillo, E.; Le, T.; Mead, S.; Hatay, M.; Luque, A.; Wegley-Kelly, L.; Vermeij, M.; Bailey, B.; Takeshita, Y.; Haas, A.; Rohwer, F.

10.1101/495481 — ecology — Posted on 2018-12-13

1410 Noninvasive lung cancer detection via pulmonary protease profiling

Kirkpatrick, J.; Warren, A. D.; Tammela, T.; Westcott, P. M. K.; Voog, J. C.; Jacks, T.; Bhatia, S. N.

10.1101/495259 — cancer biology — Posted on 2018-12-13

1411 Can a flux-based mechanism explain positioning of protein clusters in a three-dimensional cell geometry?

Kober, M.; Bergeler, S.; Frey, E.

10.1101/496364 — biophysics — Posted on 2018-12-13

1412 Characterization of young and old adult brains: An EEG functional connectivity analysis

Moezzi, B.; Pratti, L. M.; Hordacre, B.; Graetz, L.; Berryman, C.; Lavrencic, L. M.; Ridding, M. C.; Keage, H. A.; McDonnell, M. D.; Goldsworthy, M. R.

10.1101/495564 — neuroscience — Posted on 2018-12-13

1413 Using neural distance to predict reaction time for categorizing the animacy, shape, and abstract properties of objects

Ritchie, J. B.; Op de Beeck, H.

10.1101/496539 — neuroscience — Posted on 2018-12-13

1414 Brain-behaviour modes of covariation in healthy and clinically depressed young people

Mihalik, A.; Ferreira, F. S.; Rosa, M. J.; Moutoussis, M.; Ziegler, G.; Monteiro, J. M.; Portugal, L.; Adams, R. A.; Romero-Garcia, R.; Vertes, P.; Kitzbichler, M. G.; Vasa, F.; Vaghi, M. M.; Bullmore, E.; Fonagy, P.; Goodyer, I. M.; Jones, P. B.; NSPN Consortium, ; Dolan, R. J.; Mourao-Miranda, J.

10.1101/487421 — neuroscience — Posted on 2018-12-13

1415 Neural activity in a hippocampus-like region of the teleost pallium are associated with navigation and active sensing

Fotowat, H.; Lee, C.; Jun, J. J.; Maler, L.

10.1101/495887 — neuroscience — Posted on 2018-12-13

1416 Unpredictable effects of the genetic background of transgenic lines in physiological quantitative traits

Evangelou, A.; Ignatiou, A.; Antoniou, C.; Kalanidou, S.; Hadjimatheou, S.; Ellina, S.; Athanasiou, R.; Panagi, M.; Apidianakis, Y.; Pitsouli, C.

10.1101/494419 — genetics — Posted on 2018-12-13

1417 Fitness dependence of the fixation-time distribution for evolutionary dynamics on graphs

Hathcock, D.; Strogatz, S. H.

10.1101/496380 — evolutionary biology — Posted on 2018-12-13

1418 Dissection of intestines from larval zebrafish for molecular analysis

San, B.; Aben, M.; Flik, G.; Kamminga, L.

10.1101/493536 — developmental biology — Posted on 2018-12-13

1419 Proteome Integral Stability Alteration assay dramatically increases throughput and sensitivity in profiling factor-induced proteome changes

Gaetani, M.; Sabatier, P.; Saei, A. A.; Beusch, C.; Yang, Z.; Lundstrom, S.; Zubarev, R. A.

10.1101/496398 — cancer biology — Posted on 2018-12-13

1420 AdaFDR: a Fast, Powerful and Covariate-Adaptive Approach to Multiple Hypothesis Testing

Zhang, M. J.; Xia, F.; Zou, J.

10.1101/496372 — bioinformatics — Posted on 2018-12-13

1421 Stratified computational meta-analysis of 2213 acute myeloid leukemia patients reveals age- and sex-dependent gene expression signatures

Roushangar, R.; Mias, G. I.

10.1101/494948 — bioinformatics — Posted on 2018-12-13

1422 Integrated single-cell potency and expression landscape in mammary epithelium reveals novel bipotent-like cells associated with breast cancer risk

Teschendorff, A. E.; Morabito, S. J.; Kessenbrock, K.; Meyer, K. B.

10.1101/496471 — bioinformatics — Posted on 2018-12-13

1423 Methyl ketone production by Pseudomonas putida is enhanced by plant-derived amino acids

Dong, J.; Chen, Y.; Benites, V. T.; Baidoo, E.; Petzold, C.; Beller, H.; Eudes, A.; Scheller, H.; Adams, P.; Mukhopadhyay, A.; Simmons, B. A.; Singer, S. W.

10.1101/496497 — bioengineering — Posted on 2018-12-13

1424 Predicting phenotype using morphological cell responses to nanotopography

Cutiongco, M. F.; Jensen, B. S.; Reynolds, P. M.; Gadegaard, N.

10.1101/495879 — bioengineering — Posted on 2018-12-13

1425 Development of oocytes in a post-spawning Japanese eel Anguilla japonica Temminck & Schlegel in captivity

Tanaka, S.; Okamura, A.; Mikawa, N.; Yamada, Y.; Horie, N.; Tomoko, U.; Zhang, H.; Oka, H. P.; Tsukamoto, K.

10.1101/494435 — zoology — Posted on 2018-12-13

1426 The effect of carnitine on preservation of renal cold ischemia in rats

Aslaner, A.; Gunal, O.; Turgut, H. T.; Yildirim, U.

10.1101/494963 — pharmacology and toxicology — Posted on 2018-12-13

1427 Tissue distribution and tumor concentrations of hydroxychloroquine and quinacrine analogs in mice

MacKeigan, J. P.; Solitro, A. R.

10.1101/496018 — pharmacology and toxicology — Posted on 2018-12-13

1428 TDAG8 (GPR65) Inhibits Intestinal Inflammation in the DSS-Induced Experimental Colitis Mouse Model

Sanderlin, E. J.; Satturwar, S.; Hong, H.; Lertpiriyapong, K.; Marie, M.; Yang, L. V.

10.1101/496315 — pathology — Posted on 2018-12-13

1429 Neural dynamics of the impact of font style on lexical decision making in adult dyslexia

Franzen, L.; Philiastides, M. G.

10.1101/494724 — neuroscience — Posted on 2018-12-13

1430 Multi-tissue analysis reveals short tandem repeats as ubiquitous regulators of gene expression and complex traits

Feupe Fotsing, S.; Wang, C.; Saini, S.; Shleizer-Burko, S.; Goren, A.; Gymrek, M.

10.1101/495226 — genomics — Posted on 2018-12-13

1431 Genomic footprints of repeated evolution of CAM photosynthesis in tillandsioid bromeliads

de La Harpe, M.; Paris, M.; Hess, J.; Barfuss, M. H. J.; Serrano-Serrano, M. L.; Ghatak, A.; Chaturvedi, P.; Weckwerth, W.; Till, W.; Salamin, N.; Wai, C. M.; Ming, R.; Lexer, C.

10.1101/495812 — genomics — Posted on 2018-12-13

1432 Swapping Birth and Death: Symmetries and Transformations in Phylodynamic Models

Stadler, T.; Felsenstein, J.; Steel, M.

10.1101/494583 — evolutionary biology — Posted on 2018-12-13

1433 Utilization of tissue ploidy level variation in de novo transcriptome assembly of Pinus sylvestris

Ojeda, D.; Mattila, T.; Ruttink, T.; Kujala, S.; Karkkainen, K.; Verta, J.-P.; Pyhajarvi, T.

10.1101/495689 — evolutionary biology — Posted on 2018-12-13

1434 Sustainability of spatially distributed bacteria-phage systems

Eriksen, R. S.; Mitarai, N.; Sneppen, K.

10.1101/495671 — ecology — Posted on 2018-12-13

1435 Bone-Inspired Microarchitectured Materials with Enhanced Fatigue Life

Torres, A. M.; Trikanad, A. A.; Aubin, C. A.; Lambers, F. M.; Luna, M.; Rimnac, C. M.; Zavattieri, P. D.; Hernandez, C.

10.1101/494633 — bioengineering — Posted on 2018-12-13

1436 Identifying the Biosynthetic Gene Cluster for Triacsins with an N-hydroxytriazene Moiety

Twigg, F. F.; Cai, W.; Huang, W.; Liu, J.; Sato, M.; Perez, T.; Geng, J.; Dror, M.; Montanez, I.; Tong, T.; Lee, H.; Zhang, W.

10.1101/495424 — biochemistry — Posted on 2018-12-13

1437 Culturing primary neurons from rat hippocampus and cortex

Sahu, M. P.; Nikkila, O.; Lagas, S.; Kolehmainen, S.; Castren, E.

10.1101/491118 — neuroscience — Posted on 2018-12-13

1438 Benchmarking miniaturized microscopy against two-photon calcium imaging using single-cell orientation tuning in mouse visual cortex

Glas, A.; Huebener, M.; Bonhoeffer, T.; Goltstein, P. M.

10.1101/494641 — neuroscience — Posted on 2018-12-13

1439 Is Anopheles gambiae a natural host of Wolbachia?

Chrostek, E.; Gerth, M.

10.1101/491449 — microbiology — Posted on 2018-12-13

1440 CaptureSeq: Capture-based enrichment of cpn60 gene fragments empowers pan-Domain profiling of microbial communities without universal PCR

Links, M. G.; Dumonceaux, T.; McCarthy, L.; Hemmingsen, S. M.; Topp, E.; Comte, A.; Town, J. R.

10.1101/492116 — microbiology — Posted on 2018-12-13

1441 Data from an electronic health informatics pipeline to describe clearance dynamics of Hepatitis B surface antigen (HBsAg) and e-Antigen (HBeAg) in chronic HBV infection

Downs, L. O.; Smith, D.; Lumley, S. F.; Patel, M.; McNaughton, A. L.; Mokaya, J.; Ansari, A.; Salih, H.; Varnai, K. A.; Freeman, O.; Cripps, S.; Phillips, J.; Collier, J.; Woods, K.; Channon, K.; Davies, J.; Barnes, E.; Jeffery, K.; Matthews, P. C.

10.1101/494500 — microbiology — Posted on 2018-12-13

1442 Isolation and characterization of rare circulating autoantibody-producing cells from patients with muscle-specific kinase myasthenia gravis

Takata, K.; Stathopoulos, P.; Cao, M.; Mane-Damas, M.; Fichtner, M.; Benotti, E. S.; Jacobson, L.; Waters, P.; Irani, S. R.; Martinez-Martinez, P.; Beeson, D.; Losen, M.; Vincent, A.; Nowak, R. J.; O'Connor, K. C.

10.1101/488247 — immunology — Posted on 2018-12-13

1443 Expected and observed genotype complexity in prokaryotes: correlation between 16S-rRNA phylogeny and protein domain content

Koehorst, J. J.; Saccenti, E.; Martins dos Santos, V.; Suarez-Diez, M.; Schaap, P. J.

10.1101/494625 — genomics — Posted on 2018-12-13

1444 Evidence that population increase and range expansion by Eurasian Sparrowhawks has impacted avian prey populations

Bell, C. P.

10.1101/491522 — ecology — Posted on 2018-12-13

1445 Intraspecific variation promotes trait clustering and species coexistence through higher-order interactions.

Baruah, G.; John, R.

10.1101/494757 — ecology — Posted on 2018-12-13

1446 Novel Computational Method to Define RNA PSRs Explains Influenza A Virus Nucleotide Conservation

Chursov, A.; Fridlyand, N.; Sufianov, A. A.; Kiselev, O. I.; Baranovskaya, I.; Vasin, A.; Yewdell, J. W.; Shneider, A.

10.1101/494336 — bioinformatics — Posted on 2018-12-13

1447 JEPEGMIX2-P: a novel transcriptomic pathway method that greatly enhances detection of the molecular underpinnings for complex traits

Chatzinakos, C.; Lee, D.; Na, C.; Vladimirov, V.; Docherty, A.; Webb, B.; Riley, B.; Flint, J.; Kendler, K.; Bacanu, S.-A.

10.1101/373050 — bioinformatics — Posted on 2018-12-13

1448 Adaptive Identification of Cortical and Subcortical Imaging Markers of Early Life Stress and Posttraumatic Stress Disorder

Salminen, L. E.; Morey, R. A.; Riedel, B. C.; Jahanshad, N.; Dennis, E. L.; Thompson, P. M.

10.1101/482448 — neuroscience — Posted on 2018-12-13

1449 Evolution of resilience in protein interactomes across the tree of life

Zitnik, M.; Sosic, R.; Feldman, M. W.; Leskovec, J.

10.1101/454033 — systems biology — Posted on 2018-12-13

1450 cis-Regulatory Chromatin Contacts in Neural Cells Reveal Contributions of Genetic Variants to Complex Neurological Disorders

Song, M.; Yang, X.; Ren, X.; Wang, C.; Jacob, F.; Wu, K.; Traglia, M.; Li, B.; Maliskova, L.; Jones, I.; Jamieson, K.; Lu, S.-Y.; Tam, T. W.; Ming, G.-L.; Dixon, J.; Weiss, L. A.; Yao, J.; Judge, L.; Conklin, B.; Song, H.; Gan, L.; Shen, Y.

10.1101/494450 — genomics — Posted on 2018-12-13

1451 Population structure of modern-day Italians reveals patterns of ancient and archaic ancestries in Southern Europe

Raveane, A.; Aneli, S.; Montinaro, F.; Athanasiadis, G.; Barlera, S.; Birolo, G.; Boncoraglio, G.; Di Blasio, A. M.; Di Gaetano, C.; Pagani, L.; Parolo, S.; Paschou, P.; Piazza, A.; Stamatoyannopoulos, G.; Angius, A.; Brucato, N.; Cucca, F.; Hellenthal, G.; Mulas, A.; Peyret-Guzzon, M.; Zoledziewska, M.; Baali, A.; Bycroft, C.; Cherkaoui, M.; Dina, C.; Dugoujon, J.-M.; Galan, P.; Giemza, J.; Kivisild, T.; Melhaoui, M.; Metspalu, M.; Myers, S.; Pereira, L. M.; Ricaut, F.-X.; Brisighelli, F.; Cardinali, I.; Grugni, V.; Lancioni, H.; Pascali, V. L.; Torroni, A.; Semino, O.; Matullo, G.; Achilli,

10.1101/494898 — genomics — Posted on 2018-12-13

1452 Assessing the effect of hypoxia on cardiac metabolism using hyperpolarized 13C magnetic resonance spectroscopy

Le Page, L. M.; Rider, O. J.; Lewis, A. J.; Noden, V.; Kerr, M.; Giles, L.; Ambrose, L. J. A.; Ball, V.; Mansor, L.; Heather, L. C.; Tyler, D. J.

10.1101/495069 — physiology — Posted on 2018-12-13

1453 Dynamic 11C-PiB PET shows cerebrospinal fluid flow alterations in Alzheimer’s disease and multiple sclerosis

Schubert, J. J.; Veronese, M.; Marchitelli, L.; Bodini, B.; Tonietto, M.; Stankoff, B.; Brooks, D. J.; Bertoldo, A.; Edison, P.; Turkheimer, F. E.

10.1101/493734 — neuroscience — Posted on 2018-12-13

1454 Novel strand exchange activity of the human PALB2 DNA Binding Domain and its critical role for DNA repair in cells

Korolev, S.; Ryzhikov, M.; Brahati, N.; Peterlini, T.; Dellaire, G.; Masson, J.-Y.; Deveryshetty, J.

10.1101/495192 — biochemistry — Posted on 2018-12-13

1455 Schizophrenia risk conferred by protein-coding de novo mutations

Howrigan, D.; Rose, S. A.; Samocha, K. E.; Fromer, M.; Cerrato, F.; Chen, W. J.; Churchhouse, C.; Chambert, K.; Chandler, S. D.; Daly, M. J.; Dumont, A.; Genovese, G.; Hwu, H.-G.; Laird, N.; Kosmicki, J. A.; Moran, J.; Roe, C.; Singh, T.; Wang, S.-H.; Faraone, S.; Glatt, S.; McCarroll, S.; Tsuang, M.; Neale, B.

10.1101/495036 — genetics — Posted on 2018-12-13

1456 Kinetic And Structural Parameters Governing Fic-Mediated Adenylylation/AMPylation of the Hsp70 chaperone, BiP/GRP78

Mattoo, S.; Sanyal, A.; Zbornik, E. A.; Watson, B. G.; Christoffer, C.; Ma, J.; Kihara, D.

10.1101/494930 — biochemistry — Posted on 2018-12-13

1457 Neural Circuit Mechanism of Decision Uncertainty and Change-of-Mind

Atiya, N. A. A.; Rano, I.; Prasad, G.; Wong-Lin, K.

10.1101/377432 — neuroscience — Posted on 2018-12-13

1458 Nitric oxide radicals are emitted by wasp eggs to kill mold fungi

Strohm, E.; Herzner, G.; Ruther, J.; Kaltenpoth, M.; Engl, T.

10.1101/495085 — ecology — Posted on 2018-12-13

1459 The Goldilocks Window of Personalized Chemotherapy: An Immune Perspective

Park, D. S.; Robertson-Tessi, M.; Maini, P.; Bonsall, M. B.; Gatenby, R. A.; Anderson, A. R.

10.1101/495184 — cancer biology — Posted on 2018-12-13

1460 Disruption of IRE1α through its Kinase Domain Attenuates Multiple Myeloma

Harnoss, J. M.; Le Thomas, A.; Marsters, S. A.; Lawrence, D. A.; Lu, M.; Chen, Y.-C. A.; Qing, J.; Totpal, K.; Kan, D.; Segal, E.; Ackerly Wallweber, H.; Wang, W.; Clark, K.; Kaufman, S.; Beresini, M.; Sandoval, W.; Lorenzo, M.; Wu, J.; Ly, J.; De Bruyn, T.; Heidersbachh, A.; Haley, B.; Gogineni, A.; Weimer, R.; Lee, D.; Braun, M.-G.; Rudolph, J.; VanWyngarden, M. J.; Sherbenou, D. W.; Gomez-Bougie, P.; Amiot, M.; Acosta-Alvear, D.; Walter, P.; Ashkenazi, A.

10.1101/495242 — cancer biology — Posted on 2018-12-13

1461 Bee and floral traits affect the characteristics of the vibrations experienced by flowers during buzz-pollination

Arroyo-Correa, B.; Beattie, C. E.; Vallejo-Marin, M.

10.1101/494690 — biophysics — Posted on 2018-12-13

1462 Estrogen promotes pro-resolving microglial behaviour and phagocytic cell clearance through the actions of annexin A1

Loiola, R. A.; Wickstead, E. S.; Solito, E.; McArthur, S.

10.1101/494567 — neuroscience — Posted on 2018-12-13

1463 Bioinformatic screening of genes present only in well regenerating vertebrates reveals novel FGF and purinergic signaling modulator - c-Answer

Korotkova, D. D.; Lyubetsky, V. A.; Ivanova, A. S.; Rubanov, L. I.; Seliverstov, A. V.; Zverkov, O. A.; Martynova, N. Y.; Nesterenko, A. M.; Tereshina, M. B.; Peshkin, L.; Zaraisky, A. G.

10.1101/494609 — developmental biology — Posted on 2018-12-13

1464 One-dimensional sliding assists σ70-dependent promoter binding by Escherichia coli RNA polymerase

Heller, I.; Marchetti, M.; Mazumder, A.; Chakraborty, A.; Malinowska, A. M.; Roos, W. H.; Ebright, R. H.; Peterman, E. J. G.; Wuite, G. J. L.

10.1101/494534 — biophysics — Posted on 2018-12-13

1465 Nucleosome positioning stability is a significant modulator of germline mutation rate variation across the human genome

Li, C.; Luscombe, N. M.

10.1101/494914 — genomics — Posted on 2018-12-13

1466 Leaps and bounds: geographical and ecological distance constrained the colonisation of the Afrotemperate by Erica

Pirie, M. D.; Kandziora, M.; Nuerk, N. M.; Le Maitre, N. C.; Mugrabi de Kuppler, A. L.; Gehrke, B.; Oliver, E. G. H.; Bellstedt, D. U.

10.1101/290791 — evolutionary biology — Posted on 2018-12-13

1467 Cheater-mediated evolution shifts phenotypic heterogeneity in Bacillus subtilis biofilms

Martin, M.; Dragos, A.; Schafer, D.; Maroti, G.; Kovacs, A. T.

10.1101/494716 — microbiology — Posted on 2018-12-13

1468 The most abundant cyst wall proteins of Acanthamoeba castellanii are cellulose-binding lectins from three gene families that localize to distinct structures in cyst walls

Samuelson, J.; Magistrado-Coxen, P.; Aqeel, Y.; Lopez, A.; Haserick, J. R.; Urbanowicz, B. R.; Costello, C. E.

10.1101/496307 — microbiology — Posted on 2018-12-13

1469 Heptad repeat regions of coiled-coil domains of Mfn1 are crucial for Mfn1 mediated mitochondrial fusion

Sinha, S.; Aradhyam, G. K.

10.1101/495721 — cell biology — Posted on 2018-12-13

1470 Expanding the repertoire of glucocorticoid receptor target genes by engineering genomic response elements

Thormann, V.; Glaser, L. V.; Rothkegel, M. C.; Borschiwer, M.; Bothe, M.; Fuchs, A.; Meijsing, S. H.

10.1101/494708 — bioengineering — Posted on 2018-12-13

1471 Skeletal muscle ceramides do not contribute to physical inactivity-induced insulin resistance

Appriou, Z.; Nay, K.; Pierre, N.; Saligaut, D.; Lefeuvre-Orfila, L.; Martin, B.; Cavey, T.; Ropert, M.; Loreal, O.; Rannou-Bekono, F.; Derbre, F.

10.1101/494559 — physiology — Posted on 2018-12-13

1472 Monitoring Neural Activity During Exposure to Drugs of Abuse With In Vivo Fiber Photometry

Rinker, J. A.; Gioia, D.; Braunscheidel, K. M.; Wayman, W. N.; Hoffman, M.; Passarella, L.; Calipari, E. S.; Mulholland, P. J.; Woodward, J.

10.1101/487546 — neuroscience — Posted on 2018-12-13

1473 Different impacts of naturally occurring variants of the globally disseminated carbapenemase-encoding plasmid pKpQIL on the biology of host strains

Saw, H. T. H.; Webber, M.; Woodford, N.; Piddock, L. J. V.

10.1101/495986 — microbiology — Posted on 2018-12-13

1474 Evolution of regulatory networks controlling adaptive traits in cichlids

Mehta, T. K.; Koch, C.; Nash, W.; Knaack, S. A.; Sudhakar, P.; Olbei, M.; Bastkowski, S.; Penso-Dolfin, L.; Korcsmaros, T.; Haerty, W.; Roy, S.; Di-Palma, F.

10.1101/496034 — evolutionary biology — Posted on 2018-12-13

1475 TMS-evoked EEG potentials from prefrontal and parietal cortex: reliability, site specificity, and effects of NMDA receptor blockade

Rogasch, N.; Zipser, C.; Darmani, G.; Mutanen, T. P.; Biabani, M.; Zrenner, C.; Desideri, D.; Belardinelli, P.; Müller-Dahlhaus, F.; Ziemann, U.

10.1101/480111 — neuroscience — Posted on 2018-12-13

1476 Clostridioides difficile LuxS mediates inter-bacterial interactions within biofilms

Slater, R. T.; Frost, L.; Jossi, S.; Millard, A. D.; Unnikrishnan, M.

10.1101/494245 — microbiology — Posted on 2018-12-13

1477 Determinants of QTL mapping power in the realized Collaborative Cross

Keele, G. R.; Crouse, W. L.; Kelada, S. N. P.; Valdar, W.

10.1101/459966 — genetics — Posted on 2018-12-13

1478 Super-resolution modularity analysis shows that polyhedral caveolin-1 oligomers combine to form scaffolds and caveolae

Khater, I.; Liu, Q.; Chou, K. C.; Hamarneh, G.; Nabi, I. R.

10.1101/495382 — cell biology — Posted on 2018-12-13

1479 Liquid-crystal organization of liver tissue

Morales-Navarrete, H.; Nonaka, H.; Scholich, A.; Segovia-Miranda, F.; de Back, W.; Meyer, K.; Bogorad, R. L.; Koteliansky, V.; Brusch, L.; Kalaidzidis, Y.; Julicher, F.; Friedrich, B. M.; Zerial, M.

10.1101/495952 — biophysics — Posted on 2018-12-13

1480 MAGIC: A tool for predicting transcription factors and cofactors binding sites in gene sets using ENCODE data.

Roopra, A.

10.1101/492744 — bioinformatics — Posted on 2018-12-13

1481 Dissociable medial temporal pathways for encoding emotional item and context information

Ritchey, M.; Wang, S.-F.; Yonelinas, A. P.; Ranganath, C.

10.1101/248294 — neuroscience — Posted on 2018-12-13

1482 Endogenous tagging reveals differential regulation of Ca2+ channels at single AZs during presynaptic homeostatic potentiation and depression

Gratz, S. J.; Goel, P.; Bruckner, J. J.; Hernandez, R. X.; Khateeb, K.; Macleod, G.; Dickman, D.; O'Connor-Giles, K. M.

10.1101/240051 — neuroscience — Posted on 2018-12-13

1483 Towards multi-drug adaptive therapy

West, J.; You, L.; Brown, J.; Newton, P. K.; Anderson, A. R.

10.1101/476507 — cancer biology — Posted on 2018-12-13

1484 Kinesin-5 forms a stable bipolar spindle in a fast, irreversible snap

Leary, A.; Nazarova, E.; Sim, S.; Shulist, K.; Francois, P.; Vogel, J.

10.1101/452821 — biophysics — Posted on 2018-12-13

1485 Local adaptation to water-deficit and light limitation suggested from genomic and ecophysiological approaches in a dominant coastal tree

Cruz, M. V.; Mori, G. M.; Müller, C. S.; Silva, C. C.; Oh, D.-H.; Dassanayake, M.; Zucchi, M. I.; Oliveira, R. S.; de Souza, A.

10.1101/378612 — plant biology — Posted on 2018-12-13

1486 Comprehensive Identification of Fim-Mediated Inversions in Uropathogenic Escherichia coli with Structural Variation Detection Using Relative Entropy

Russell, C. W.; Sukumaran, R.; Liow, L. T.; Periaswamy, B.; Rafee, S.; Chee, Y. C.; Chen, S. L.

10.1101/494401 — microbiology — Posted on 2018-12-13

1487 Coevolution of male and female mate choice can destabilize reproductive isolation

Aubier, T. G.; Kokko, H.; Joron, M.

10.1101/246355 — evolutionary biology — Posted on 2018-12-13

1488 Bursts and constraints generate a rainbow in the lorikeets

Merwin, J. T.; Smith, B. T.; Seeholzer, G. F.

10.1101/489419 — evolutionary biology — Posted on 2018-12-13

1489 Forces and constraints controlling podosome assembly and disassembly

Mohd Rafiq, N.; Grenci, G.; Kozlov, M. M.; Jones, G. E.; Viasnoff, V.; Bershadsky, A. D.

10.1101/495176 — cell biology — Posted on 2018-12-13

1490 Directional selection rather than functional constraints can shape the G matrix in rapidly adapting asexuals

Gomez, K.; Bertram, J.; Masel, J.

10.1101/351171 — evolutionary biology — Posted on 2018-12-13

1491 Confinement-induced transition between wave-like collective cell migration modes

Petrolli, V.; Le Goff, M.; Tadrous, M.; Martens, K.; Allier, C.; Mandula, O.; Herve, L.; Henkes, S.; Sknepnek, R.; Boudou, T.; Cappello, G.; Balland, M.

10.1101/495747 — biophysics — Posted on 2018-12-13

1492 Uncultured marine cyanophages encode for active NblA, phycobilisome proteolysis adaptor protein

Nadel, O.; Rozenberg, A.; Flores-Uribe, J.; Larom, S.; Schwarz, R.; Beja, O.

10.1101/494369 — microbiology — Posted on 2018-12-13

1493 Integrated genetic and methylomic analyses identify shared biology between autism and autistic traits

Massrali, A.; Brunel, H.; Hannon, E.; Wong, C.; iPSYCH-MINERvA Epigenetics Group, ; Baron-Cohen, S.; Warrier, V.

10.1101/493601 — genetics — Posted on 2018-12-13

1494 Spatio-temporal modelling of Leishmania infantum infection among domestic dogs: a simulation study and sensitivity analysis applied to rural Brazil

Buckingham-Jeffery, E.; Hill, E. M.; Datta, S.; Dilger, E.; Courtenay, O.

10.1101/418558 — epidemiology — Posted on 2018-12-13

1495 On the role of different age groups during pertussis epidemics in California, 2010 and 2014

Mahmud, A.; Lipsitch, M.; Goldstein, E.

10.1101/405076 — epidemiology — Posted on 2018-12-13

1496 Spatial soft sweeps: patterns of adaptation in populations with long-range dispersal

Paulose, J.; Hermisson, J.; Hallatschek, O.

10.1101/299453 — evolutionary biology — Posted on 2018-12-13

1497 Levels of outpatient prescribing for four major antibiotic classes and rates of septicemia hospitalization in adults in different US states

Goldstein, E.; Olesen, S.; Karaca, Z.; Steiner, C. A.; Viboud, C.; Lipsitch, M.

10.1101/404046 — epidemiology — Posted on 2018-12-13

1498 Heterogeneous progenitor cell behaviors underlie the assembly of neocortical cytoarchitecture

Llorca, A.; Ciceri, G.; Beattie, R.; Wong, F. K.; Diana, G.; Serafeimidou, E.; Fernandez-Otero, M.; Streicher, C.; Arnold, S. J.; Meyer, M.; Hippenmeyer, S.; Maravall, M.; Marin, O.

10.1101/494088 — neuroscience — Posted on 2018-12-13

1499 Oncogenes, tumor suppressor and differentiation genes represent the oldest human gene classes and evolve concurrently

Makashov, A.; Malov, S. V.; Kozlov, A. P.

10.1101/493627 — evolutionary biology — Posted on 2018-12-13

1500 YAP-independent mechanotransduction drives breast cancer progression

Lee, J. Y.; Chang, J.; Dominguez, A. A.; Nam, S.; Chang, J.; Lee, H.-p.; Varma, S.; Qi, L. S.; West, R. B.; Chaudhuri, O.

10.1101/495499 — cancer biology — Posted on 2018-12-13

1501 Broken symmetry in the human BK channel

Tonggu, L.; Wang, L.

10.1101/494385 — biochemistry — Posted on 2018-12-13

1502 Developmental Dieldrin Exposure Alters DNA Methylation at Genes Related to Dopaminergic Neuron Development and Parkinson’s Disease in Mouse Midbrain

Kochmanski, J.; VanOeveren, S. E.; Bernstein, A. I.

10.1101/494237 — pharmacology and toxicology — Posted on 2018-12-13

1503 High-dimensional characterization of IL-10 production and IL-10 dependent regulation during primary gammaherpesvirus infection

Kimball, A. K.; Oko, L. M.; Kaspar, R. E.; van Dyk, L. F.; Clambey, E. T.

10.1101/490789 — immunology — Posted on 2018-12-13

1504 Can cancer GWAS variants modulate immune cells in the tumor microenvironment?

Zhang, Y.; Manjunath, M.; Yan, J.; Baur, B. A.; Zhang, S.; Roy, S.; Song, J. S.

10.1101/493171 — cancer biology — Posted on 2018-12-13

1505 Guided nuclear exploration increases CTCF target search efficiency

Hansen, A. S.; Amitai, A.; Cattoglio, C.; Tjian, R.; Darzacq, X.

10.1101/495457 — biophysics — Posted on 2018-12-13

1506 Longitudinal prediction of outcome in idiopathic pulmonary fibrosis using automated CT analysis

Jacob, J.; Bartholmai, B. J.; van Moorsel, C. H. M.; Rajagopalan, S.; Devaraj, A.; van Es, H. W.; Moua, T.; van Beek, F. T.; Clay, R.; Veltkamp, M.; Kokosi, M.; de Lauretis, A.; Judge, E. P.; Burd, T.; Peikert, T.; Karwoski, R.; Maldonado, F.; Renzoni, E.; Maher, T. M.; Altmann, A.; Wells, A. U.

10.1101/493544 — bioinformatics — Posted on 2018-12-13

1507 Robust Antibacterial Activity of Tungsten Oxide (WO3-X) Nanodots

Duan, G.; Chen, L.; Jing, Z.; De Luna, P.; Wen, L.; Zhang, L.; Zhao, L.; Xu, J.; Li, Z.; Yang, Z.; Zhou, R.

10.1101/494260 — pharmacology and toxicology — Posted on 2018-12-13

1508 The dynamic emergence of musical pitch structure in human cortex

Sankaran, N.; Carlson, T. A.; Thompson, W. F.

10.1101/494294 — neuroscience — Posted on 2018-12-13

1509 Inhibitory microcircuits for top-down plasticity of sensory representations

Wilmes, K. A.; Clopath, C.

10.1101/494989 — neuroscience — Posted on 2018-12-13

1510 Comparison of subtyping approaches and the underlying drivers of microbial signatures for chronic rhinosinusitis

Biswas, K.; Cavubati, R.; Gunaratna, S.; Hoggard, M.; Waldvogel-Thurlow, S.; Chang, K.; Wagner Mackenzie, B.; Taylor, M. W.; Douglas, R. G.

10.1101/494393 — microbiology — Posted on 2018-12-13

1511 Cheater-mediated evolution shifts phenotypic heterogeneity in Bacillus subtilis biofilms

Dragos, A.; Martin, M.; Schafer, D.; Maroti, G.; Kovacs, A. T.

10.1101/494716 — microbiology — Posted on 2018-12-13

1512 Oncogenic PIK3CA promotes cellular stemness in an allele dose-dependent manner

Madsen, R.; Knox, R.; Pearce, W.; Lopez, S.; Mahler-Araujo, B.; McGranahan, N.; Vanhaesebroeck, B.; Semple, R.

10.1101/495093 — cancer biology — Posted on 2018-12-13

1513 Integrative haplotype estimation with sub-linear complexity

Delaneau, O.; Zagury, J.-F.; Robinson, M. R.; Marchini, J.; Dermitzakis, E.

10.1101/493403 — bioinformatics — Posted on 2018-12-13

1514 Evolution of connections and cell types: integrating diffusion MR tractography with gene expression data highlights increased cortico-cortical projections in primates

Charvet, C.; Palani, A.; Priya Kabaria, P.; Takahashi, E.

10.1101/493593 — neuroscience — Posted on 2018-12-13

1515 Low acetylcholine during early sleep is important for motor memory consolidation

Inayat, S.; Qandeel, Q.; Nazariahangarkolaee, M.; Singh, S.; McNaughton, B. L.; Whishaw, I. Q.; Mohajerani, M. H.

10.1101/494351 — neuroscience — Posted on 2018-12-13

1516 Large-scale analyses of human microbiomes reveal thousands of small, novel genes and their predicted functions

Sberro, H.; Greenfield, N.; Pavlopoulos, G.; Kyrpides, N.; Bhatt, A. S.

10.1101/494179 — microbiology — Posted on 2018-12-13

1517 Uncovering the unexplored diversity of thioamidated ribosomal peptides in Actinobacteria using the RiPPER genome mining tool

Santos-Aberturas, J.; Chandra, G.; Frattaruolo, L.; Lacret, R.; Pham, T. H.; Vior, N. M.; Eyles, T. H.; Truman, A. W.

10.1101/494286 — microbiology — Posted on 2018-12-13

1518 Genome sequence of Pseudomonas aeruginosa PAO1161, a PAO1 derivative with the ICEFP2 integrative and conjugative element

Kawalek, A.; Kotecka, K.; Modrzejewska, M.; Jagura-Burdzy, G.; Bartosik, A. A.

10.1101/494302 — microbiology — Posted on 2018-12-13

1519 The conservation status of Costa Rican velvet worms (Onychophora)

Morera-Brenes, B.; Monge-Najera, J.; Carrera-Mora, P.

10.1101/493833 — ecology — Posted on 2018-12-13

1520 SVIM: Structural Variant Identification using Mapped Long Reads

Heller, D.; Vingron, M.

10.1101/494096 — bioinformatics — Posted on 2018-12-13

1521 GTShark: Genotype compression in large project

Deorowicz, S.; Danek, A.

10.1101/494104 — bioinformatics — Posted on 2018-12-13

1522 Fast and Flexible Sequence Induction In Spiking Neural Networks Via Rapid Excitability Changes

Pang, R.; Fairhall, A. L.

10.1101/494310 — neuroscience — Posted on 2018-12-13

1523 Ultra-Efficient Short Read Sequencing of Immune Receptor Repertoires

Montagne, J.; Zheng, X.; Pinal-Fernandez, I.; Milisenda, J.; Christopher-Stine, L.; Lloyd, T.; Mammen, A.; Larman, H. B.

10.1101/494062 — immunology — Posted on 2018-12-13

1524 Environmental heterogeneity drives tsetse fly population dynamics

Cecilia, H.; Arnoux, S.; Picault, S.; Dicko, A.; Seck, M. T.; Sall, B.; Bassene, M.; Vreysen, M.; Pagabeleguem, S.; Bance, A.; Bouyer, J.; Ezanno, P.

10.1101/493650 — ecology — Posted on 2018-12-13

1525 svtools: population-scale analysis of structural variation

Larson, D. E.; Abel, H. J.; Chiang, C.; Badve, A.; Das, I.; Eldred, J. M.; Layer, R. M.; Hall, I. M.

10.1101/494203 — bioinformatics — Posted on 2018-12-13

1526 Description and biology of two new egg parasitoid species, Trichogramma chagres and T. soberania (Hymenoptera: Trichogrammatidae) reared from eggs of Heliconiini butterflies (Lepidoptera: Nymphalidae: Heliconiinae) collected in Panama

Woelke, J. B.; Viktor, F. N.; Gumovsky, A. V.; de Rijk, M.; Estrada, C.; Verbaarschoot, P.; Huigens, M. E.; Fatouros, N.

10.1101/493643 — zoology — Posted on 2018-12-13

1527 Forecasting when cells die during antibiotic exposure using stochastic gene expression

Rossi, N.; El Meouche, I.; Dunlop, M. J.

10.1101/494161 — systems biology — Posted on 2018-12-13

1528 Synergy and remarkable specificity of antimicrobial peptides in vivo using a systematic knockout approach

Hanson, M. A.; Dostalova, A.; Ceroni, C.; Poidevin, M.; Kondo, S.; Lemaitre, B.

10.1101/493817 — immunology — Posted on 2018-12-13

1529 DeepAffinity: Interpretable Deep Learning of Compound Protein Affinity through Unified Recurrent and Convolutional Neural Networks

Karimi, M.; Wu, D.; Wang, Z.; Shen, Y.

10.1101/351601 — bioinformatics — Posted on 2018-12-13

1530 Co-Expression Network-based Analysis associated with potato initial resistance

Yan, L.; Lai, X.; Wu, Y.; Tan, X.; Zhang, Y.; Wang, H.

10.1101/496075 — plant biology — Posted on 2018-12-13

1531 Region-specific regulation of stem cell-driven regeneration in tapeworms

Rozario, T.; Quinn, E. B.; Wang, J.; Davis, R. A.; Newmark, P. A.

10.1101/495234 — developmental biology — Posted on 2018-12-13

1532 Water transmission potential of Angiostrongylus cantonensis: larval viability, and effectiveness of rainwater catchment sediment filters

Howe, K.; Kaluna, L.; Fisher, B. T.; Tagami, Y.; McHugh, R.; Jarvi, S. I.

10.1101/496273 — zoology — Posted on 2018-12-13

1533 Carbon sink services for tropical coastal seagrass are far lower than anticipated when accounting for black carbon

Gallagher, J. B.; Chuan, C. H.; Yap, T. K.; Farahain, W.

10.1101/493262 — plant biology — Posted on 2018-12-13

1534 The most abundant cyst wall proteins of Acanthamoeba castellanii are cellulose-binding lectins from three gene families that localize to distinct structures in cyst walls

Samuelson, J.; Magistrado-Coxen, P.; Aqeel, Y.; Lopez, A.; Haserick, J. R.; Urbanowicz, B. R.; Costello, C. E.

10.1101/496307 — microbiology — Posted on 2018-12-13

1535 Analysis of a meningococcal meningitis outbreak in Niger - potential effectiveness of reactive prophylaxis

Hitchings, M. D. T.; Coldiron, M. E.; Grais, R. F.; Lipsitch, M.

10.1101/496299 — epidemiology — Posted on 2018-12-13

1536 Queen and king recognition in the subterranean termite, Reticulitermes flavipes: Evidence for royal recognition pheromones

Funaro, C. F.; Schal, C.; Vargo, E. L.

10.1101/496240 — animal behavior and cognition — Posted on 2018-12-13

1537 Monocotyledonous vascular bundles characterized by image analysis and pattern recognition

da Silva, J. V.; Comin, C.; da Fontoura Costa, L.

10.1101/494039 — plant biology — Posted on 2018-12-13

1538 Chicory demonstrates substantial water uptake from below 2 m, but still did not escape topsoil drought

Rasmussen, C. R.; Thorup-Kristensen, K.; Dresboll, D. B.

10.1101/494906 — plant biology — Posted on 2018-12-13

1539 Modified recipe to inhibit GSK-3 for the living fungal biomaterial manufacture

Jinhui, C.; Chan, K. P.; Xie, Y.; Ma, K. L.; Kwan, H. S.

10.1101/496265 — developmental biology — Posted on 2018-12-13

1540 A regulatory module controlling stress-induced cell cycle arrest in Arabidopsis

Takahashi, N.; Ogita, N.; Takahashi, T.; Taniguchi, S.; Tanaka, M.; Seki, M.; Umeda, M.

10.1101/495200 — plant biology — Posted on 2018-12-13

1541 Clonal seeds in hybrid rice using CRISPR/Cas9

Wang, C.; Liu, Q.; Shen, Y.; Hua, Y.; Wang, J.; Lin, J.; Wu, M.; Sun, T.; Cheng, Z.; Mercier, R.; Wang, K.

10.1101/496042 — plant biology — Posted on 2018-12-13

1542 Correlation between the oral microbiome and brain resting state connectivity in smokers

Lin, D.; Hutchison, K. E.; Portillo, S.; Vegara, V.; Ellingson, J. M.; Liu, J.; Krauter, K. S.; Carroll-Portillo, A.; Calhoun, V.

10.1101/444612 — microbiology — Posted on 2018-12-13

1543 Cover letter RE \"Video observations of the acute effects of dredged sediment deposition on mobile epifauna\"

Roegner, G. C.

10.1101/496281 — ecology — Posted on 2018-12-13

1544 Low Level LASER Therapy Induces Therapeutic Angiogenesis in Diabetic Mice with Hindlimb Ischemia

Huang, S.-J.; Teng, Y.-H.; Cheng, Y.-J.

10.1101/496208 — physiology — Posted on 2018-12-13

1545 One hundred years of climate change in Mexico

Ureta, C.; Cuervo-Robayo, A.; Gomez-Albores, M. A.; Meneses Mosquera, A. K.; Tellez Valdes, O.; Martinez-Meyer, E.

10.1101/496216 — ecology — Posted on 2018-12-13

1546 Collective search with finite perception: transient dynamics and search efficiency

Gosztolai, A.; Carrillo, J. A.; Barahona, M.

10.1101/419689 — biophysics — Posted on 2018-12-13

1547 Effect of soybean molasses-adsorbents on in vitro ruminal fermentation characteristics, milk production performance in lactating dairy cows

Chen, L.; Li, B.; Ren, A.; Kong, Z.; Zhou, C.; Tan, Z.; Tang, S.; Fang, R.

10.1101/496224 — animal behavior and cognition — Posted on 2018-12-13

1548 Prediction of Neurocognitive Profiles in Youth From Resting State fMRI

Sripada, C.; Rutherford, S.; Angstadt, M.; Thompson, W. K.; Luciana, M.; Weigard, A.; Hyde, L.; Heitzeg, M.

10.1101/495267 — neuroscience — Posted on 2018-12-13

1549 Inorganic polyphosphate (polyP) is required for sustained free mitochondrial calcium elevation, following stimulated calcium uptake.

Solesio, M. E.; Garcia del Molino, L. C.; Elustondo, P. A.; Catherine, D.; Chang, J. C.; Pavlov, E. V.

10.1101/493825 — molecular biology — Posted on 2018-12-13

1550 Immunogenicity and protective potency of Norovirus GII.17 virus-like particle-based vaccine

Chen, W.; Kang, T.; Yuan, R.; Zhang, Y.; Xin, S.; Shao, C.; Jing, S.

10.1101/496190 — immunology — Posted on 2018-12-13

1551 Sensory Loss Enhances Multisensory Integration Performance

Peter, M. G.; Porada, D. K.; Regenbogen, C.; Olsson, M. J.; Lundström, J. N.

10.1101/483586 — neuroscience — Posted on 2018-12-13

1552 Unique properties of high-order thalamic inputs versus cortical inputs to primary somatosensory cortex

Zhang, E.; Bruno, R. M.

10.1101/495218 — neuroscience — Posted on 2018-12-13

1553 Exploring the role of Polycomb recruitment in Xist-mediated silencing of the X chromosome in ES cells

Bousard, A.; Raposo, A. C.; Zylicz, J. J.; Picard, C.; Pires, V. B.; Qi, Y.; Syx, L.; Chang, H. Y.; Heard, E.; da Rocha, S. T.

10.1101/495739 — genetics — Posted on 2018-12-13

1554 Stone Age \"chewing gum\" yields 5,700 year-old human genome and oral microbiome

Jensen, T. Z.; Niemann, J.; Hoejholt Iversen, K.; Fotakis, A. K.; Gopalakrishnan, S.; Sinding, M. H.; Ellegaard, M. R.; Allentoft, M. E.; Lanigan, L. T.; Taurozzi, A. J.; Holtsmark Nielsen, S.; Dee, M. W.; Mortensen, M. N.; Christensen, M. C.; Soerensen, S. A.; Collins, M. J.; Gilbert, T.; Sikora, M.; Rasmussen, S.; Schroeder, H.

10.1101/493882 — genomics — Posted on 2018-12-13

1555 Gut microbiome response to a modern Paleolithic diet in a Western lifestyle context

Barone, M.; Turroni, S.; Rampelli, S.; Soverini, M.; D'Amico, F.; Biagi, E.; Brigidi, P.; Troiani, E.; Candela, M.

10.1101/494187 — microbiology — Posted on 2018-12-13

1556 Expanded genomic analyses for male voice-breaking highlights a shared phenotypic and genetic basis between puberty timing and hair colour

Hollis, B.; Day, F. R.; Busch, A. S.; Thompsen, D. J.; Soares, A. L. G.; Timmers, P. R.; Kwong, A.; Easton, D. F.; Joshi, P. K.; Timpson, N. J.; The PRACTICAL Consortium, ; 23andMe Research Team, ; Ong, K. K.; Perry, J. R.

10.1101/483933 — genomics — Posted on 2018-12-13

1557 Mitogenomes illuminate the origin and migration patterns of the indigenous people of the Canary Islands

Fregel, R.; Ordonez, A. C.; Santana-Cabrera, J.; Cabrera, V. M.; Velasco-Vazquez, J.; Alberto, V.; Moreno-Benitez, M. A.; Delgado-Darias, T.; Rodriguez-Rodriguez, A.; Hernandez, J. C.; Pais, J.; Gonzalez-Montelongo, R.; Lorenzo-Salazar, J. M.; Flores, C.; Cruz-de-Mercadal, M. C.; Alvarez-Rodriguez, N.; Shapiro, B.; Arnay, M.; Bustamante, C. D.

10.1101/486142 — genetics — Posted on 2018-12-13

1558 Comprehensive Immune Monitoring of Clinical Trials to Advance Human Immunotherapy

Hartmann, F. J.; Babdor, J.; Gherardini, P. F.; Amir, E.-A. D.; Jones, K.; Sahaf, B.; Marquez, D. M.; Krutzik, P.; O'Donnell, E.; Sigal, N.; Maecker, H. T.; Meyer, E.; Spitzer, M. H.; Bendall, S. C.

10.1101/489765 — immunology — Posted on 2018-12-13

1559 An RNA-binding region regulates CTCF clustering and chromatin looping

Hansen, A. S.; Hsieh, T.-H. S.; Cattoglio, C.; Pustova, I.; Darzacq, X.; Tjian, R.

10.1101/495432 — biophysics — Posted on 2018-12-13

1560 Antiretroviral therapy is the principal cause of tuberculosis decline in southern and eastern Africa

Dye, C.; Williams, B. G.

10.1101/477158 — epidemiology — Posted on 2018-12-13

1561 Patient reported distress can aid clinical decision making in idiopathic pulmonary fibrosis: analysis of the PROFILE cohort

Stewart, I.; McKeever, T.; Braybrooke, R.; Oballa, E.; Simpson, J. K.; Maher, T. M.; Marshall, R. P.; Lukey, P. T.; Fahy, W. A.; Jenkins, G.; Saini, G.

10.1101/460626 — clinical trials — Posted on 2018-12-13

1562 Differences in functional connectivity along the anterior-posterior axis of human hippocampal subfields

Dalton, M. A.; McCormick, C.; Maguire, E. A.

10.1101/410720 — neuroscience — Posted on 2018-12-13

1563 Dynamic changes in cerebral and peripheral markers of glutamatergic signaling across the human sleep-wake cycle

Weigend, S.; Holst, S. C.; Treyer, V.; O'Gorman Tuura, R. L.; Meier, J.; Ametamey, S. M.; Buck, A.; Landolt, H.-P.

10.1101/458885 — neuroscience — Posted on 2018-12-13

1564 Object visibility, not energy expenditure, accounts for spatial biases in human grasp selection

Maiello, G.; Paulun, V. C.; Klein, L. K.; Fleming, R. W.

10.1101/476101 — neuroscience — Posted on 2018-12-13

1565 Machine Learning in Multi-Omics Data to Assess Longitudinal Predictors of Glycaemic Health

Prelot, L.; Draisma, H.; Anasanti, M. D.; Balkhiyarova, Z.; Wielscher, M.; Yengo, L.; Balkau, B.; Roussel, R.; Sebert, S.; Ala-Korpela, M.; Froguel, P.; Jarvelin, M.-R.; Kaakinen, M.; Prokopenko, I.

10.1101/358390 — genomics — Posted on 2018-12-13

1566 Separate the wheat from the chaff: genomic scan for local adaptation in the red coral Corallium rubrum

Pratlong, M.; Haguenauer, A.; Brener, K.; Mitta, G.; Toulza, E.; Garrabou, J.; Bensoussan, N.; Pontarotti, P.; Aurelle, D.

10.1101/306456 — evolutionary biology — Posted on 2018-12-13

1567 Paternal grandparental exposure to crop failure or surfeit during a childhood slow growth period: Epigenetic marks on grandchildren’s growth, glucoregulatory and stress genes

Bygren, L. O.; Muller, P.; Brodin, D.; Kaati, G.; Gustafsson, J.-A.; Kral, J. G.

10.1101/215467 — genomics — Posted on 2018-12-13

1568 To examine environmental pollution by economic growth and their impact in an environmental Kuznets curve (EKC) among developed and developing countries.

Kong, Y.; Khan, R.

10.1101/492348 — ecology — Posted on 2018-12-13

1569 Decreased integration of EEG source-space networks in disorders of consciousness

Rizkallah, J.; Annen, J.; Modolo, J.; Gosseries, O.; Benquet, P.; Mortaheb, S.; Amoud, H.; Cassol, H.; Mheich, A.; Thibaut, A.; Chatelle, C.; Hassan, M.; Panda, R.; Wendling, F.; laureys, s.

10.1101/493395 — neuroscience — Posted on 2018-12-13

1570 The topology of DNA entrapment by cohesin rings.

Chapard, C.; Jones, R.; van Oepen, T.; Scheinost, J. C.; Nasmyth, K.

10.1101/495762 — molecular biology — Posted on 2018-12-13

1571 Abundance and community composition of comammox bacteria in different ecosystems by a universal primer set

Zhao, Z.; Huang, G.; Wang, M.; Zhou, N.; He, S.; Dang, C.; Wang, J.; Zheng, M.

10.1101/492488 — microbiology — Posted on 2018-12-13

1572 Repurposing antihypertensive drugs for the prevention of Alzheimer’s disease: a Mendelian Randomization study

Walker, V. M.; Kehoe, P. G.; Martin, R. M.; Davies, N. M.

10.1101/486878 — genetics — Posted on 2018-12-13

1573 Stable knockout and complementation of receptor expression using in vitro cell line derived reticulocytes for dissection of host malaria invasion requirements

Satchwell, T. J.; Wright, K. E.; Haydn-Smith, K. L.; Teran, F. S.-R.; Hawksworth, J.; Frayne, J.; Toye, A. M.; Baum, J.

10.1101/495853 — cell biology — Posted on 2018-12-13

1574 Microbial dispersal limitation to isolated soil habitats in the McMurdo Dry Valleys of Antarctica

Archer, S.; Lee, K.; Caruso, T.; Maki, T.; Lee, C.; Cowan, D.; Maestre, F.; Pointing, S.

10.1101/493411 — microbiology — Posted on 2018-12-13

1575 Coping with multiple enemies: pairwise interactions do not predict evolutionary change in complex multitrophic communities

McClean, D.; Friman, V.; Finn, A.; Salzberg, L.; Donohue, I.

10.1101/492132 — evolutionary biology — Posted on 2018-12-13

1576 Man against machine: Do fungal fruitbodies and eDNA give similar biodiversity assessments across broad environmental gradients?

Froeslev, T. G.; Kjoeller, R.; Bruun, H. H.; Ejrnaes, R.; Hansen, A. J.; Laessoee, T.; Heilmann-Clausen, J.

10.1101/493312 — ecology — Posted on 2018-12-13

1577 Birds invest wingbeats to keep a steady head and reap the ultimate benefits of flocking

Taylor, L. A.; Biro, D.; Lambert, B.; Walker, J. A.; Taylor, G. K.; Portugal, S. J.

10.1101/492090 — animal behavior and cognition — Posted on 2018-12-13

1578 Pleomorphic Adenoma Gene 1 Is Needed For Timely Zygotic Genome Activation and Early Embryo Development

Madissoon, E.; Damdimopoulos, A.; Katayama, S.; Krjutskov, K.; Einarsdottir, E.; Mamia, K.; De Groef, B.; Hovatta, O.; Kere, J.; Damdimopoulou, P.

10.1101/305375 — developmental biology — Posted on 2018-12-13

1579 Multimorbidity states with high sepsis-related deaths: a data-driven analysis in critical care

Zador, Z.; Alexander, L.; Cusimano, M.; Geifman, N.

10.1101/491712 — bioinformatics — Posted on 2018-12-13

1580 Cryo-EM sample preparation method for extremely low concentration liposomes

Tonggu, L.; Wang, L.

10.1101/494997 — biochemistry — Posted on 2018-12-13

1581 Actomyosin-II facilitates long-range retrograde transport of large cargoes by controlling axonal radial contractility

Wang, T.; Li, W.; Martin, S.; Papadopulos, A.; Shamsollahi, G.; Lanoue, V.; Padmanabhan, P.; Huang, H.; Yu, X.; Anggono, V.; Meunier, F.

10.1101/492959 — neuroscience — Posted on 2018-12-13

1582 Age-dependent changes in transcription factor FOXO targeting in Drosophila melanogaster

Birnbaum, A.; Wu, X.; Tatar, M.; Liu, N.; Bai, H.

10.1101/456426 — genomics — Posted on 2018-12-13

1583 Climate and vegetation collectively drive soil respiration in montane forest-grassland landscapes of the southern Western Ghats, India

Joshi, A. A.; Ratnam, J.; Paramjyothi, H.; Sankaran, M.

10.1101/486324 — ecology — Posted on 2018-12-13

1584 BAP1 Haploinsufficiency Predicts a Distinct Immunogenic Class of Malignant Peritoneal Mesothelioma

Shrestha, R.; Nabavi, N.; Lin, Y.-Y.; Mo, F.; Anderson, S.; Volik, S.; Adomat, H. H.; Lin, D.; Xue, H.; Dong, X.; Shukin, R.; Bell, R. H.; McConeghy, B.; Haegert, A.; Brahmbhatt, S.; Li, E.; Oo, H. Z.; Hurtado-Coll, A.; Fazli, L.; Zhou, J.; McConnell, Y.; McCart, A.; Lowy, A.; Morin, G. B.; Chen, T.; Daugaard, M.; Sahinalp, S. C.; Hach, F.; Le Bihan, S.; Gleave, M. E.; Wang, Y.; Churg, A.; Collins, C. C.

10.1101/243477 — cancer biology — Posted on 2018-12-13

1585 Modifying Reaction Diffusion: A Numerical Model for Turing Morphogenesis and Ben Jacob Patterns

Trepka, K.

10.1101/370304 — biophysics — Posted on 2018-12-13

1586 Combinatorial Detection of Conserved Alteration Patterns for Identifying Cancer Subnetworks

Hodzic, E.; Shrestha, R.; Zhu, K.; Cheng, K.; Collins, C. C.; Sahinalp, S. C.

10.1101/369850 — systems biology — Posted on 2018-12-13

1587 Home ground advantage: selection against dispersers promotes local adaptation in wild Atlantic salmon

Mobley, K. B.; Granroth-Wilding, H.; Ellmen, M.; Vaha, J.-P.; Aykanat, T.; Johnston, S. E.; Orell, P.; Erkinaro, J.; Primmer, C. R.

10.1101/311258 — evolutionary biology — Posted on 2018-12-12

1588 Radial F-actin Organization During Early Neuronal Development

Meka, D. P.; Scharrenberg, R.; Zhao, B.; Koenig, T.; Schaefer, I.; Schwanke, B.; Kobler, O.; Klykov, S.; Richter, M.; Eggert, D.; Windhorst, S.; Dotti, C. G.; Kreutz, M. R.; Mikhaylova, M.; Calderon de Anda, F.

10.1101/372813 — neuroscience — Posted on 2018-12-12

1589 Modulation of tissue growth heterogeneity by responses to mechanical stress

Fruleux, A.; Boudaoud, A.

10.1101/425355 — biophysics — Posted on 2018-12-12

1590 beta-actin mRNA interactome mapping by proximity biotinylation

Mukherjee, J.; Hermesh, O.; Nalpas, N.; Franz-Wachtel, M.; Macek, B.; Jansen, R.-P.

10.1101/405589 — cell biology — Posted on 2018-12-12

1591 Can machine learning assess trunk alignment directly from raw video using a depth camera?

Sanchez, M. B.; Cunningham, R.; Butler, P. B.; Loram, I.

10.1101/421172 — bioengineering — Posted on 2018-12-12

1592 The idiosyncratic drivers of correlated evolution

Dench, J.; Hinz, A.; Aris-Brosou, S.; Kassen, R.

10.1101/474536 — evolutionary biology — Posted on 2018-12-12

1593 Deciphering complex metabolite mixtures by unsupervised and supervised substructure discovery and semi-automated annotation from MS/MS spectra

Rogers, S.; Wei Ong, C.; Wandy, J.; Ernst, M.; Ridder, L.; van der Hooft, J. J. J.

10.1101/491506 — bioinformatics — Posted on 2018-12-12

1594 Striatal-frontal network activation during voluntary task selection under conditions of monetary reward

Orr, J. M.; Imburgio, M. J.; Bernard, J. A.; Banich, M. T.

10.1101/434399 — neuroscience — Posted on 2018-12-12

1595 Using multiple measurements of tissue to estimate cell-type-specific gene expression via deconvolution

Wang, J.; Devlin, B.; Roeder, K.

10.1101/379099 — bioinformatics — Posted on 2018-12-12

1596 The structural basis of lipid scrambling and inactivation in the endoplasmic reticulum scramblase TMEM16K

Bushell, S. R.; Pike, A. C. W.; Falzone, M. E.; Rorsman, N. J. G.; Ta, C. M.; Corey, R. A.; Newport, T. D.; Shintre, C. A.; Tessitore, A.; Chu, A.; Wang, Q.; Shrestha, L.; Mukhopadhyay, S.; Love, J. D.; Burgess-Brown, N. A.; Sitsapesan, R.; Stansfeld, P. J.; Huiskonen, J. T.; Tammaro, P.; Accardi, A.; Carpenter, E. P.

10.1101/447417 — biochemistry — Posted on 2018-12-12

1597 Energetic substrate availability regulates synchronous activity in an excitatory neural network

Tourigny, D. S.; Abdul Karim, M. K.; Echeveste, R.; Kotter, M. R.; O'Neill, J. S.

10.1101/363671 — neuroscience — Posted on 2018-12-12

1598 Targeting antibiotic resistant bacteria with phages reduces bacterial density in an insect host

Mikonranta, L.; Buckling, A.; Jalasvuori, M.; Raymond, B.

10.1101/493718 — evolutionary biology — Posted on 2018-12-12

1599 TgCentrin2 is required for invasion and replication in the human parasite Toxoplasma gondii

Leung, J. M.; Liu, J.; Wetzel, L. A.; Hu, K.

10.1101/491316 — cell biology — Posted on 2018-12-12

1600 Translational control of TFEB and autophagy via eIF5A rejuvenates B cell immunity

Zhang, H.; Alsaleh, G.; Feltham, J.; Sun, Y.; Riffelmacher, T.; Charles, P.; Frau, L.; Yu, Z.; Mohammed, S.; Balabanov, S.; Mellor, J.; Simon, A. K.

10.1101/360503 — cell biology — Posted on 2018-12-12

1601 The urge to blink in Tourette syndrome

Botteron, H. E.; Richards, C. A.; Bihun, E. C.; Nishino, T.; Acevedo, H. K.; Koller, J. M.; Black, K. J.

10.1101/477372 — neuroscience — Posted on 2018-12-12

1602 Pervasive within-host recombination and epistasis as major determinants of the molecular evolution of the Foot-and-Mouth Disease Virus capsid

Ferretti, L.; Perez, E.; Zhang, F.; Maree, F.; de Klerk-Lorist, L.-M.; van Schalkwykc, L.; Juleff, N. D.; Charleston, B.; Ribeca, P.

10.1101/271239 — microbiology — Posted on 2018-12-12

1603 Holobiont Evolution: Model with Lineal vs. Collective Hologenome Inheritance

Roughgarden, J.

10.1101/465310 — evolutionary biology — Posted on 2018-12-12

1604 Linked-read sequencing of gametes allows efficient genome-wide analysis of meiotic recombination

Sun, H.; Rowan, B. A.; Flood, P. J.; Brandt, R.; Fuss, J.; Hancock, A. M.; Michelmore, R. W.; Huettel, B.; Schneeberger, K.

10.1101/484022 — bioinformatics — Posted on 2018-12-12

1605 Thermodynamically Consistent Estimation of Gibbs Free Energy from Data: Data Reconciliation Approach

Salike, S.; Bhatt, N.

10.1101/492819 — systems biology — Posted on 2018-12-12

1606 Serum GlycA level is a candidate biomarker for disease activity in systemic lupus erythematosus and for proliferative status of lupus nephritis, independent of renal function impairment.

Dierckx, T.; Goletti, S.; Chiche, L.; Daniel, L.; Lauwerys, B.; Jourde-Chiche, N.; Van Weyenbergh, J.

10.1101/493809 — immunology — Posted on 2018-12-12

1607 Immunological Diversity with Similarity

Arora, R.; Burke, H. M.; Arnaout, R.

10.1101/483131 — immunology — Posted on 2018-12-12

1608 pcaExplorer: an R/Bioconductor package for interacting with RNA-seq principal components

Marini, F.; Binder, H.

10.1101/493551 — bioinformatics — Posted on 2018-12-12

1609 Bayesian inference of chromatin structure ensembles from population Hi-C data

Carstens, S.; Nilges, M.; Habeck, M.

10.1101/493676 — bioinformatics — Posted on 2018-12-12

1610 Phylogenetic measures of indel rate variation among the HIV-1 group M subtypes

Palmer, J.; Poon, A.

10.1101/494344 — microbiology — Posted on 2018-12-12

1611 Collagen density regulates the activity of tumor-infiltrating T cells

Kuczek, D. E.; Hvid Larsen, A. M.; Carretta, M.; Kalvisa, A.; Siersbaek, M. S.; Carnaz Simoes, A. M.; Roslind, A.; Engelholm, L. H.; Donia, M.; Svane, I. M.; Straten, P. t.; Grontved, L.; Madsen, D. H.

10.1101/493437 — immunology — Posted on 2018-12-12

1612 cGAMP signaling controls a transient surface-associated lifestyle

Hallberg, Z. F.; Chan, C. H.; Wright, T. A.; Kranzusch, P. J.; Doxzen, K. W.; Park, J. J.; Bond, D.; Hammond, M. C.

10.1101/495150 — biochemistry — Posted on 2018-12-12

1613 Recruitment of the protein phosphatase-1 catalytic subunit to promoters by the dual-function transcription factor RFX1

Lubelsky, Y.; Shaul, Y.

10.1101/493429 — molecular biology — Posted on 2018-12-12

1614 Establishment of the mayfly Cloeon dipterum as a new model system to investigate insect evolution

Almudi, I.; Martin-Blanco, C.; Garcia-Fernandez, I. M.; Lopez-Catalina, A.; Davie, K.; Aerts, S.; Casares, F.

10.1101/494674 — evolutionary biology — Posted on 2018-12-12

1615 FBXO45-MYCBP2 regulates mitotic cell fate by targeting FBXW7 for degradation

Hoffmann, I.; Richter, K. T.; Kschonsak, Y. T.; Vodicska, B.

10.1101/493791 — cell biology — Posted on 2018-12-12

1616 Critical Role of Histone Tail Entropy in Nucleosome Unwinding

Zhang, B.; Parsons, T.

10.1101/494328 — biophysics — Posted on 2018-12-12

1617 The loci of behavioral evolution: Fas2 and tilB underlie differences in pupation site choice behavior between Drosophila melanogaster and D. simulans

Pischedda, A.; Shahandeh, M. P.; Turner, T. L.

10.1101/494013 — genetics — Posted on 2018-12-12

1618 Manganese influx and expression of ZIP8 is essential in primary myoblasts and contributes to activation of SOD2

Gordon, S. J. V.; Fenker, D. E.; Vest, K. E.; PADILLA-BENAVIDES, T.

10.1101/494542 — cell biology — Posted on 2018-12-12

1619 Factors influencing the measurement of assimilation and stomatal conductance with the LI-COR 6400XT gas exchange system.

LeCain, D.; Gleason, S.

10.1101/494120 — plant biology — Posted on 2018-12-12

1620 Sex chromosome evolution via two genes

Harkess, A.; Huang, K.; van der Hulst, R.; Tissen, B.; Caplan, J. L.; Koppula, A.; Batish, M.; Meyers, B. C.; Leebens-Mack, J.

10.1101/494112 — genetics — Posted on 2018-12-12

1621 What is known about modified insects for disease prevention?: a systematic review

Nazareth, T.; Craveiro, I.; Moutinho, A.; Goncalves, C.; Goncalves, L.; Teodosio, R.; Sousa, C. A.

10.1101/494849 — ecology — Posted on 2018-12-12

1622 Comparison of microbiome and culture techniques for determination of gastrointestinal microbial communities in ceca of chickens

Wilson, K.; Briggs, W.; Duff, A.; Kaylin, C.; Sun, X.; Bielke, L.

10.1101/494781 — microbiology — Posted on 2018-12-12

1623 Mucosal CD8+ T cell responses induced by an MCMV based vaccine vector confer protection against influenza challenge

Zheng, X.; Oduro, J. D.; Boehme, J. D.; Borkner, L.; Ebensen, T.; Heise, U.; Gereke, M.; Pils, M.; Krmpotic, A.; Guzman, C.; Bruder, D.; Cicin-Sain, L.

10.1101/494864 — immunology — Posted on 2018-12-12

1624 Monocyte Infection Dynamics Shape HIV-1 Phyloanatomy in the Peripheral Blood

Rife Magalis, B.; Strickland, S. L.; Shank, S. D.; Autissier, P.; Schuetz, A.; Sithinamsuwam, P.; Lerdlum, S.; Fletcher, J. L. K.; de Souza, M.; Ananworanich, J.; Valcour, V.; Williams, K. C.; Kosakovsky Pond, S. L.; Ratto Kim, S.; Salemi, M.; SEARCH007,

10.1101/494856 — evolutionary biology — Posted on 2018-12-12

1625 A new framework for the study of apicomplexan diversity across environments

del Campo, J.; Heger, T.; Rodriguez-Martinez, R.; Worden, A. Z.; Richards, T. A.; Massana, R.; Keeling, P. J.

10.1101/494880 — microbiology — Posted on 2018-12-12

1626 Molecular epidemiology of carbapenem-resistant Enterobacter cloacae complex infections uncovers high frequency of non-carbapenemase-producers in five tertiary care hospitals from Colombia

Cienfuegos-Gallet, A.; Ocampo, A. M.; Chavda, K.; Chen, L.; Kreiswirth, B. N.; Jimenez, J. N.

10.1101/494807 — epidemiology — Posted on 2018-12-12

1627 Differential trafficking of albumin and IgG facilitated by the neonatal Fc receptor in podocytes in vitro and in vivo.

Dylewski, J.; Dobrinskikh, E.; Lewis, L.; Tonsawan, P.; Jat, P.; Blaine, J.

10.1101/494823 — cell biology — Posted on 2018-12-12

1628 Ulinastatin prevents hyperoxia-induced lung injury on newborn rats by downregulating TNF-α and inhibiting macrophage infiltration

Xu, F.; Deng, W.; Kong, X.; Feng, Z.

10.1101/494773 — pathology — Posted on 2018-12-12

1629 Application of CNTF or FGF-2 increases the number of M2-like macrophages after optic nerve injury in adult Rana pipiens

Blanco, R. E.; Vega-Melendez, G. S.; De La Rosa-Reyes, V.; del Cueto, C.; Blagburn, J. M.

10.1101/494831 — neuroscience — Posted on 2018-12-12

1630 Mapping the bacterial ecology on the phyllosphere of grass hay and the potential hazards of soaking fodder for horse gut health

Moore-Colyer, M.; Longland, A.; Harris, P.; Crosthwaite, S.

10.1101/494799 — microbiology — Posted on 2018-12-12

1631 Relationship of drought severity index with climatic factors on the Tibetan Plateau

Wang, X.

10.1101/494815 — ecology — Posted on 2018-12-12

1632 Homeostatic plasticity rules control the wiring of axo-axonic synapses at the axon initial segment

Pan-Vazquez, A.; Wefelmeyer, W.; Gonzalez Sabater, V.; Burrone, J.

10.1101/453753 — neuroscience — Posted on 2018-12-12

1633 Architecture of a bacterial type II secretion system

Chernyatina, A. A.; Low, H. H.

10.1101/397794 — microbiology — Posted on 2018-12-12

1634 Posterior axis formation requires Dlx5/Dlx6 expression at the neural plate border

Narboux-Neme, N.; Ekker, M.; Levi, G.; Heude, E.

10.1101/435321 — developmental biology — Posted on 2018-12-12

1635 Extracellular SPARC improves cardiomyocyte contraction during health and disease

Deckx, S.; Johnson, D. M.; Rienks, M.; Carai, P.; van Deel, E.; van der Velden, J.; Sipido, K.; Heymans, S.; Papageorgiou, A.-P.

10.1101/492363 — physiology — Posted on 2018-12-12

1636 Myocardin ablation in a cardiac-renal rat model

Mittal, A.; Rana, S.; Sharma, R.; Kumar, A.; Prasad, R.; Raut, S. K.; Sarkar, S.; Nahar, U.; Bahl, A.; Dhandapany, P. S.; Khullar, M.

10.1101/470708 — molecular biology — Posted on 2018-12-12

1637 Defoliation estimation of forest trees from ground-level images

Kalin, U.; Lang, N.; Hug, C.; Gessler, A.; Wegner, J. D.

10.1101/441733 — ecology — Posted on 2018-12-12

1638 Turning and twisting motion of chromosomes as an accelerating force to align homologous chromosomes during meiosis

Takao, K.; Takamiya, K.; Ding, D.-Q.; Haraguchi, T.; Hiraoka, Y.; Nishimori, H.; Awazu, A.

10.1101/459271 — biophysics — Posted on 2018-12-12

1639 Genomic insights into evolutionary journey of the porcine endogenous retroviruses

Chen, Y.; Chen, M.; Duan, X.; Cui, J.

10.1101/431858 — microbiology — Posted on 2018-12-12

1640 A fluorescent reporter enables instantaneous measurement of cell cycle speed in live cells

Eastman, A. E.; Chen, X.; Hu, X.; Hartman, A. A.; Pearlman Morales, A. M.; Yang, C.; Lu, J.; Kueh, H. Y.; Guo, S.

10.1101/494252 — cell biology — Posted on 2018-12-11

1641 Resistance to Diet Induced Obesity in the Apolipoprotein E Deficient Mouse is Associated with an Attenuated Transcriptional Response in Visceral Fat

Fitzgibbons, T. P.; Kelly, M.; Kim, J. K.; Czech, M. P.

10.1101/494195 — physiology — Posted on 2018-12-11

1642 General characterization of regeneration in Aeolosoma viride

Chen, C.-P.; Fok, S. K.-W.; Hsieh, Y.-W.; Chen, C.-Y.; Hsu, F.-M.; Chen, J.-H.

10.1101/493304 — developmental biology — Posted on 2018-12-11

1643 Structural Insights into Curli Amyloid Fibrils suggest Repurposing Anti-amyloid Compounds as Anti-biofilm Agents

Perov, S.; Lidor, O.; Salinas, N.; Golan, N.; Tayeb-Fligelman, E.; Willbold, D.; Landau, M.

10.1101/493668 — biochemistry — Posted on 2018-12-11

1644 Rapid active zone remodeling consolidates presynaptic potentiation

Boehme, M. A.; McCarthy, A. W.; Grasskamp, A. T.; Beuschel, C. B.; Goel, P.; Jusyte, M.; Laber, D.; Huang, S.; Rey, U.; Petzold, A. G.; Lehmann, M.; Goettfert, F.; Haghighi, P.; Hell, S. W.; Owald, D.; Dickman, D.; Sigrist, S. J.; Walter, A. M.

10.1101/493452 — neuroscience — Posted on 2018-12-11

1645 Astrotactins 1 and 2 have similar membrane topology and mature via endoproteolytic cleavage catalyzed by signal peptidase

Lara, P.; Tellgren-Roth, A.; Behesti, H.; Horn, Z.; Schiller, N.; Enquist, K.; Cammenberg, M.; Liljenström, A.; Hatten, M. E.; Von Heijne, G.; Nilsson, I.

10.1101/493858 — neuroscience — Posted on 2018-12-11

1646 Symmetric Intralimb Transfer of Skilled Isometric Force Production

Rajan, V. A.; Hardwick, R. M.; Celnik, P. A.

10.1101/491415 — neuroscience — Posted on 2018-12-11

1647 beditor: A computational workflow for designing libraries of guide RNAs for CRISPR-mediated base editing

Dandage, R.; Despres, P. C.; Yachie, N.; Landry, C. R.

10.1101/426973 — synthetic biology — Posted on 2018-12-11

1648 Differential physiological role of BIN1 isoforms in skeletal muscle development, function and regeneration

Prokic, I.; Cowling, B. S.; Kutchukian, C.; Kretz, C.; Tasfaout, H.; Hergueux, J.; Wendling, O.; Ferry, A.; Toussaint, A.; Gavriilidis, C.; Nattarayan, V.; Koch, C.; Lainne, J.; Combe, R.; Tiret, L.; Jacquemond, V.; Pilot-Storck, F.; Laporte, J.

10.1101/477950 — pathology — Posted on 2018-12-11

1649 A non-Lamarckian model for the inheritance of the epigenetically-coded phenotypic characteristics: a new paradigm for Genetics, Genomics and, above all, Ageing studies

Marsellach, X.

10.1101/492280 — genetics — Posted on 2018-12-11

1650 USE: An integrative suite for temporally-precise psychophysical experiments in virtual environments for human, nonhuman, and artificially intelligent agents

Watson, M. R.; Voloh, B.; Thomas, C. J.; Hasan, A.; Womelsdorf, T.

10.1101/434944 — neuroscience — Posted on 2018-12-11

1651 Polysaccharide A-dependent opposing effects of mucosal and systemic exposures to human gut commensal Bacteroides fragilis in type 1 diabetes

Sofi, M. H.; Johnson, B. M.; Gudi, R. R.; Jolly, A.; Gaudreau, M.-C.; Vasu, C.

10.1101/492579 — immunology — Posted on 2018-12-11

1652 Genes of the Pig, Sus scrofa, reconstructed with Evidential Gene

Gilbert, D. G.

10.1101/412130 — genomics — Posted on 2018-12-11

1653 The molecular genetics of hand preference revisited

de Kovel, C. G. F.; Francks, C.

10.1101/447177 — genetics — Posted on 2018-12-11

1654 Parameter estimation and identifiability in a neural population model for electro-cortical activity

Hartoyo, A.; Cadusch, P.; Liley, D.; Hicks, D.

10.1101/492504 — neuroscience — Posted on 2018-12-11

1655 Characterization of Pacific oyster (Crassostrea gigas) proteomic response to natural environmental differences

Venkataraman, Y. R.; Timmins-Schiffman, E.; Horwith, M. J.; Lowe, A. T.; Nunn, B.; Vadopalas, B.; Spencer, L. H.; Roberts, S. B.

10.1101/460204 — ecology — Posted on 2018-12-11

1656 Targeting MYC Overexpressing Leukemia with Cardiac Glycoside Proscillaridin Through Downregulation of Histone Acetyltransferases

Da Costa, E. M.; Armaos, G.; McInnes, G.; Beaudry, A.; Moquin-Beaudry, G.; Bertrand-Lehouillier, V.; Caron, M.; Richer, C.; St-Onge, P.; Johnson, J.; Krogan, N.; Sai, Y.; Downey, M.; Rafei, M.; Boileau, M.; Eppert, K.; Flores-Diaz, E.; Haman, A.; Hoang, T.; Sinnett, D.; Beausejour, C.; McGraw, S.; Raynal, N. J. M.

10.1101/444133 — pharmacology and toxicology — Posted on 2018-12-11

1657 Early detonation by sprouted mossy fibers enables aberrant dentate network activity

Hendricks, W. D.; Westbrook, G. L.; Schnell, E.

10.1101/466300 — neuroscience — Posted on 2018-12-11

1658 Homozygous TRPV4 mutation causes congenital distal spinal muscular atrophy and arthrogryposis

Velilla, J.; Marchetti, M. M.; Toth-Petroczy, A.; Grosgogeat, C. A.; Bennett, A. H.; Carmichael, N.; Estrella, E.; Darras, B. T.; Frank, N. Y.; Krier, J.; Gaudet, R.; Gupta, V. A.

10.1101/402388 — genetics — Posted on 2018-12-11

1659 Embryo geometry drives formation of robust signaling gradients through receptor localization

Zhang, Z.; Zwick, S.; Loew, E.; Grimley, J. S.; Ramanathan, S.

10.1101/491290 — developmental biology — Posted on 2018-12-11

1660 An archaeal symbiont-host association from the deep terrestrial subsurface

Schwank, K.; Bornemann, T. L. V.; Dombrowski, N.; Spang, A.; Banfield, J. F.; Probst, A. J.

10.1101/486977 — microbiology — Posted on 2018-12-11

1661 A complete Cannabis chromosome assembly and adaptive admixture for elevated cannabidiol (CBD) content

Grassa, C. J.; Wenger, J. P.; Dabney, C.; Poplawski, S. G.; Motley, S. T.; Michael, T. P.; Schwartz, C. J.; Weiblen, G. D.

10.1101/458083 — genomics — Posted on 2018-12-11

1662 Extreme genetic signatures of local adaptation during plant colonization

Shah, N.; Wakabayashi, T.; Kawamura, Y.; Skovbjerg, C. K.; Wang, M.-Z.; Mustamin, Y.; Isomura, Y.; Gupta, V.; Jin, H.; Mun, T.; Sandal, N.; Azuma, F.; Fukai, E.; Seren, U.; Kusakabe, S.; Kikuchi, Y.; Nitanda, S.; Kumaki, T.; Soenderkaer, M.; Nielsen, K. L.; Schneeberger, K.; Stougaard, J.; Sato, S.; Schierup, M. H.; Andersen, S. U.

10.1101/485789 — evolutionary biology — Posted on 2018-12-11

1663 What explains the effect of education on cardiovascular disease? Applying Mendelian randomization to identify the consequences of education inequality

Carter, A. R.; Gill, D.; Davies, N. M.; Taylor, A. E.; Tillmann, T.; Vaucher, J.; Wootton, R. E.; Munafo, M. R.; Hemani, G.; Malik, R.; Seshadri, S.; Woo, D.; Burgess, S.; Davey Smith, G.; Holmes, M. V.; Tzoulaki, I.; Howe, L. D.; Dehghan, A.

10.1101/488254 — epidemiology — Posted on 2018-12-11

1664 Trypanosoma brucei Pex13.2 is an accessory peroxin that functions in the import of PTS2 proteins and localizes to subdomains of the glycosome

Crowe, L.; Nicholson, K.; Wilkinson, C.; Morris, M. T.

10.1101/474080 — cell biology — Posted on 2018-12-11

1665 The Evolution of SlyA/RovA Transcription Factors From Repressors to Counter-Silencers in Enterobacteriaceae

Will, W. R.; Brzovic, P.; Le Trong, I.; Stenkamp, R. E.; Lawrenz, M. B.; Karlinsey, J. E.; Navarre, W. W.; Main-Hester, K.; Miller, V. L.; Libby, S. J.; Fang, F. C.

10.1101/369546 — microbiology — Posted on 2018-12-11

1666 Integrated modeling of peptide digestion and detection for the prediction of proteotypic peptides in targeted proteomics

Gao, Z.; Chang, C.; Zhu, Y.; Fu, Y.

10.1101/399436 — bioinformatics — Posted on 2018-12-11

1667 pavo 2: new tools for the spectral and spatial analysis of colour in R

Maia, R.; Gruson, H.; Endler, J. A.; White, T. E.

10.1101/427658 — animal behavior and cognition — Posted on 2018-12-11

1668 Nuclear and mitochondrial genomic resources for the meltwater stonefly, Lednia tumana (Plecoptera: Nemouridae)

Hotaling, S.; Kelley, J. L.; Weisrock, D. W.

10.1101/360180 — genomics — Posted on 2018-12-11

1669 Porcine circovirus 2 uses a multitude of weak binding sites to interact with heparan sulfate, and the interactions do not follow the symmetry of the capsid

Dhindwal, S.; Avila, B.; Feng, S.; Khayat, R.

10.1101/370411 — biophysics — Posted on 2018-12-11

1670 Protection of rhesus macaques against vaginal SHIV challenges by VRC01 and an anti-α4β7 antibody

Calenda, G.; Frank, I.; Arrode-Bruses, G.; Pegu, A.; Wang, K.; Arthos, J.; Cicala, C.; Grasperge, B.; Blanchard, J. L.; Maldonado, S.; Roberts, K.; Gettie, A.; Fauci, A. S.; Mascola, J. R.; Martinelli, E.

10.1101/365551 — immunology — Posted on 2018-12-11

1671 Short hairpin RNAs artifactually impair cell growth and suppress clustered microRNA expression.

Powers, J.; da Rocha, E. L.; Pearson, D.; Missios, P.; de Soysa, T. Y.; Barragan, J.; Cahan, P.; Daley, G.

10.1101/372920 — cancer biology — Posted on 2018-12-11

1672 Identification of evolutionarily conserved virulence factor by selective pressure analysis of Streptococcus pneumoniae

Yamaguchi, M.; Goto, K.; Hirose, Y.; Yamaguchi, Y.; Sumitomo, T.; Nakata, M.; Nakano, K.; Kawabata, S.

10.1101/356212 — microbiology — Posted on 2018-12-11

1673 Genesis of the αβ T-cell receptor

Dupic, T.; Marcou, Q.; Walczak, A. M.; Mora, T.

10.1101/353128 — immunology — Posted on 2018-12-11

1674 Estimating the benefit of quarantine: eradicating invasive cane toads from islands

Smart, A. S.; Tingley, R.; Phillips, B. L.

10.1101/344796 — ecology — Posted on 2018-12-11

1675 Spatial soft sweeps: patterns of adaptation in populations with long-range dispersal

Paulose, J.; Hermisson, J.; Hallatschek, O.

10.1101/299453 — evolutionary biology — Posted on 2018-12-11

1676 The return of the trophic chain: fundamental vs realized interactions in a simple arthropod food web

Torres-Campos, I.; Magalhaes, S.; Moya-Larano, J.; Montserrat, M.

10.1101/324178 — ecology — Posted on 2018-12-11

1677 Phenotypes associated with genes encoding drug targets are predictive of clinical trial side effects

Nguyen, P. A.; Born, D. A.; Deaton, A. M.; Nioi, P.; Ward, L. D.

10.1101/285858 — genetics — Posted on 2018-12-11

1678 Mathematical modelling elucidates core mechanisms underpinning GnRH pulse generation

Voliotis, M.; Li, X.-F.; De Burgh, R.; Lass, G.; Lightman, S. L.; O'Byrne, K. T.; Tsaneva-Atanasova, K.

10.1101/245548 — physiology — Posted on 2018-12-11

1679 Enteric Pathogen Diversity in Infant Foods in Low-income Neighborhoods Of Kisumu, Kenya

Tsai, K.; Simiyu, S.; Mumma, J.; Aseyo, R. E.; Cumming, O.; Dreibelbis, R.; Baker, K.

10.1101/493213 — microbiology — Posted on 2018-12-11

1680 Estimating variance components in population scale family trees

Shor, T.; Geiger, D.; Erlich, Y.; Weissbrod, O.

10.1101/256396 — genetics — Posted on 2018-12-11

1681 Evolutionary games with environmental feedbacks

Tilman, A. R.; Akcay, E.; Plotkin, J.

10.1101/493023 — evolutionary biology — Posted on 2018-12-11

1682 Interaction specificity of clustered protocadherins inferred from sequence covariation and structural analysis

Nicoludis, J. M.; Green, A.; Walujkar, S.; May, E.; Sotomayor, M.; Marks, D.; Gaudet, R.

10.1101/493106 — biophysics — Posted on 2018-12-11

1683 Actomyosin-II facilitates long-range retrograde transport of large cargoes by controlling axonal radial contractility

Wang, T.; Li, W.; Martin, S.; Papadopulos, A.; Shamsollahi, G.; Lanoue, V.; Padmanabhan, P.; Huang, H.; Yu, X.; Anggono, V.; Meunier, F.

10.1101/492959 — neuroscience — Posted on 2018-12-11

1684 Gamblers: an Antibiotic-induced Evolvable Cell Subpopulation Differentiated by Reactive-oxygen-induced General Stress Response

Pribis, J. P.; Garcia-Villada, L.; Zhai, Y.; Lewin-Epstein, O.; Wang, A.; Liu, J.; Xia, J.; Mei, Q.; Fitzgerald, D. M.; Bos, J.; Austin, R.; Herman, C.; Bates, D.; Hadany, L.; Hastings, P. J.; Rosenberg, S. M.

10.1101/493015 — microbiology — Posted on 2018-12-11

1685 Spatial sorting as the spatial analogue of natural selection

Phillips, B.; Perkins, T. A.

10.1101/210088 — evolutionary biology — Posted on 2018-12-11

1686 The telomeric Cdc13-Stn1-Ten1 complex regulates RNA polymerase II transcription

Calvo, O.; Grandin, N.; Jordan-Pla, A.; Minambres, E.; Gonzalez-Polo, N.; Perez-Ortin, J. E.; Charbonneau, M.

10.1101/493296 — molecular biology — Posted on 2018-12-11

1687 A genome-wide haploid genetic screen for essential factors in vaccinia virus infection identifies TMED10 as regulator of macropinocytosis

Luteijn, R. D.; van Diemen, F. R.; Blomen, V. A.; Boer, I. G.; Manikam Sadasivam, S.; van Kuppevelt, T.; Drexler, I.; Brummelkamp, T. R.; Lebbink, R. J.; Wiertz, E. J.

10.1101/493205 — microbiology — Posted on 2018-12-11

1688 The Dot/Icm-translocated effector LegC4 potentiates cytokine-mediated restriction of Legionella within accidental hosts.

Ngwaga, T.; Hydock, A. J.; Ganesan, S.; Shames, S. R.

10.1101/493197 — microbiology — Posted on 2018-12-11

1689 The Antiviral Protein Viperin Enhances The Host Interferon Response Following STING Activation

Crosse, K.; Monson, E.; Smith, M.; Tseng, Y.-Y.; Van der Hoek, K.; Revill, P.; Tscharke, D.; Beard, M.; Helbig, K.

10.1101/493098 — immunology — Posted on 2018-12-11

1690 Human Genes Escaping X-inactivation Revealed by Single Cell Expression Data

Wainer Katsir, K.; Linial, M.

10.1101/486084 — genomics — Posted on 2018-12-11

1691 Focal adhesion-generated cues in extracellular matrix regulate cell migration by local induction of clathrin-coated plaques

Bucher, D.; Mukenhirn, M.; Sochacki, K. A.; Saharuka, V.; Huck, C.; Zambarda, C.; Taraska, j.; Cavalcanti-Adam, E. A.; Boulant, S.

10.1101/493114 — cell biology — Posted on 2018-12-11

1692 Tissue-specific dysregulation of mitochondrial respiratory capacity and coupling control in colon-26 tumor-induced cachexia

Khamoui, A. V.; Halle, J. L.; Pena, G. S.; Paez, H. G.; Rossiter, H. B.; Visavadiya, N. P.; Whitehurst, M. A.

10.1101/493056 — physiology — Posted on 2018-12-11

1693 Systemic loss of Sarm1 is glioprotective after neurotrauma

Lopez-Schier, H.; Tian, W.; Asgharsharghi, A.; Valera, G.; Czopka, T.; Haehnel-Taguchi, M.

10.1101/493163 — cell biology — Posted on 2018-12-11

1694 A multiparametric, quantitative and high-throughput assay to quantify the influence of target size on phagocytic uptake

Montel, L.; Pinon, L.; Fattaccioli, J.

10.1101/482547 — biophysics — Posted on 2018-12-11

1695 Mechanical and kinetic factors drive sorting of F-actin crosslinkers on bundles

Freedman, S. L.; Suarez, C.; Winkelman, J. D.; Kovar, D. R.; Voth, G. A.; Dinner, A. R.; Hocky, G. M.

10.1101/493841 — biophysics — Posted on 2018-12-11

1696 Upregulation of photosynthetic capacity and thylakoid membrane protein enhanced tolerance to heat stress in wucai (Brassica campestris L.)

Yujie, Y.; Lingyun, Y.; Jie, W.; Mengru, Z.; Yun, D.; Shilei, X.; Shidong, Z.; Jinfeng, H.; Guohu, C.; Wang, C.

10.1101/493247 — biochemistry — Posted on 2018-12-11

1697 Mechanistic insights into the evolution of DUF26-containing proteins in land plants

Vaattovaara, A.; Brandt, B.; Rajaraman, S.; Safronov, O.; Veidenberg, A.; Luklova, M.; Kangasjärvi, J.; Löytynoja, A.; Hothorn, M.; Salojärvi, J.; Wrzaczek, M.

10.1101/493502 — plant biology — Posted on 2018-12-11

1698 A Draft Genome and High-Density Genetic Mapof European Hazelnut (Corylus avellana L.)

Rowley, E. R.; VanBuren, R.; Bryant, D. W.; Priest, H. D.; Mehlenbacher, S. A.; Mockler, T. C.

10.1101/469015 — genomics — Posted on 2018-12-11

1699 MESSAR: Automated recommendation of metabolite substructures from tandem mass spectra

Liu, Y.; Mrzic, A.; Meysman, P.; De Vijlder, T.; Romijn, E. P.; Valkenborg, D.; Bittremieux, W.; Laukens, K.

10.1101/134189 — bioinformatics — Posted on 2018-12-11

1700 Oxytocin effects on brain and behavior are influenced by dose-frequency and receptor genotype: therapeutic implications

Kou, J.; Zhang, Y.; Zhou, F.; Sindermann, C.; Montag, C.; Becker, B.; Kendrick, K.

10.1101/493387 — neuroscience — Posted on 2018-12-11

1701 A VTA GABAergic neural circuit mediates visually evoked innate defensive responses

Zhou, Z.; Liu, X.; Chen, S.; Zhang, Z.; Liu, Y.; Montardy, Q.; Tang, Y.; Wei, P.; Liu, N.; Li, L.; He, X.; Chen, C.; Bi, G.; Feng, G.; Xu, F.; Wang, L.

10.1101/493007 — neuroscience — Posted on 2018-12-11

1702 Novel Alzheimer risk genes determine the microglia response to amyloid-β but not to TAU pathology

Sierksma, A.; Lu, A.; Salta, E.; Mancuso, R.; Zoco, J.; Blum, D.; Buee, L.; De Strooper, B.; Fiers, M.

10.1101/491902 — neuroscience — Posted on 2018-12-11

1703 Early maltreatment experience increases resting-state functional connectivity in thetheory of mind (ToM) network

Boccadoro, S.; Siugzdaite, R.; Hudson, A.; Maeyens, L.; Van Hamme, C.; Mueller, S.

10.1101/493635 — neuroscience — Posted on 2018-12-11

1704 Novel and known signals of selection for fat deposition in domestic sheep breeds from Africa and Eurasia

Mastrangelo, S.; Bahbahani, H.; Moioli, B.; Ahbara, A.; Al Abri, M.; Almathen, F.; da Silva, A.; Portolano, B.; Mwacharo, J. M.; Hanotte, O.; Pilla, F.; ciani, e.

10.1101/493940 — genetics — Posted on 2018-12-11

1705 Diffeomorphic registration with intensity transformation and missing data: Application to 3D digital pathology of Alzheimer’s disease

Tward, D. J.; Brown, T.; Kageyama, Y.; Patel, J.; Hou, Z.; Mori, S.; Albert, M.; Troncoso, J.; Miller, M.

10.1101/494005 — neuroscience — Posted on 2018-12-11

1706 Characterisation of antigenic MHC Class I-restricted T cell epitopes in the glycoprotein of Ebolavirus

Powlson, J.; Wright, D.; Zeltina, A.; Giza, M.; Nielsen, M.; Rampling, T.; Venkatrakaman, N.; Ewer, K. J.; Bowden, T. A.; Hill, A. V. S.

10.1101/494021 — immunology — Posted on 2018-12-11

1707 Satellite DNA-containing gigantic introns in a unique gene expression program during Drosophila spermatogenesis

Fingerhut, J. M.; Moran, J. V.; Yamashita, Y.

10.1101/493254 — developmental biology — Posted on 2018-12-11

1708 Novel allelic variant of Lpa1 gene associated with a significant reduction in seed phytic acid content in rice (Oryza sativa L.)

Kishor, D. S.; Lee, C.; Lee, D.; Venkatesh, J.; Seo, J.; Chin, J. H.; Jin, Z.; Hong, S.-K.; Ham, J.-K.; Koh, H.-J.

10.1101/493981 — plant biology — Posted on 2018-12-11

1709 Plant behaviour: A mathematical approach for understandingintra-plant communication

tedone, f.; Del Dottore, E.; Mazzolai, B.; Marcati, P.

10.1101/493999 — plant biology — Posted on 2018-12-11

1710 Science Family skills: An Alexa Assistant Tailored for Laboratory Routine

Lubiana Alves, T.; Goncalves, A. A. N. A.; Nakaya, H. I.

10.1101/484147 — molecular biology — Posted on 2018-12-11

1711 Consensus interpretation of the Met34Thr and Val37Ile variants in GJB2 by the ClinGen Hearing Loss Expert Panel

Shen, J.; Oza, A.; del Castillo, I.; Duzkale, H.; Matsunaga, T.; Pandya, A.; Kang, H.; Mar-Heyming, R.; Guha, S.; Moyer, K.; Lo, C.; Kenna, M.; Alexander, J.; Zhang, Y.; Hirsch, Y.; Luo, M.; Cao, Y.; Wai Choy, K.; Cheng, Y.-F.; Avraham, K.; Hu, X.; Garrido, G.; Moreno-Pelayo, M.; Greinwald, J.; Zhang, K.; Zeng, Y.; Brownstein, Z.; Basel-Vanagaite, L.; Davidov, B.; Frydman, M.; Weiden, T.; Nagan, N.; Willis, A.; Hemphill, S.; Grant, A.; Siegert, R.; DiStefano, M.; Amr, S.; Rehm, H.; Abou Tayoun, A.; The ClinGen Hearing Loss Working Group,

10.1101/493130 — genetics — Posted on 2018-12-11

1712 Physical activity in children and adolescents with Charcot-Marie-Tooth disease: A cross-sectional case-controlled study

Kennedy, R.; Carroll, K.; Paterson, K. L.; Ryan, M. M.; Burns, J.; Rose, K.; McGinley, J. L.

10.1101/493908 — neuroscience — Posted on 2018-12-11

1713 The loci of behavioral evolution: Fas2 and tilB underlie differences in pupation site choice behavior between Drosophila melanogaster and D. simulans

Pischedda, A.; Shahandeh, M. P.; Turner, T. L.

10.1101/494013 — genetics — Posted on 2018-12-11

1714 Investigation of the spatial heterogeneity of soil microbial biomass carbon and nitrogen under long-term fertilizations in fluvo-aquic soil

Ye, H.

10.1101/493973 — ecology — Posted on 2018-12-11

1715 Determination of salivary cortisol in donkey stallions

SGORBINI, M.; Bonelli, F.; Rota, A.; Aurich, C.; Ille, N.; Camillo, F.; Panzani, D.

10.1101/493965 — physiology — Posted on 2018-12-11

1716 Low genetic variation in tolerance to defoliation in a long-lived tropical understorey palm

Jansen, M.; Zuidema, P. A.; van Ast, A.; Bongers, F.; Malosetti, M.; Martinez-Ramos, M.; Nunez-Farfan, J.; Anten, N. P. R.

10.1101/493932 — ecology — Posted on 2018-12-11

1717 Transcriptome analysis of fasting caecotrophy on hepatic lipid metabolism in New Zealand rabbits

wang, y.; Xu, H.; Sun, G.; Xue, M.; Sun, S.; Huang, T.; Zhou, J.; Juan, L. J.; Li, M.

10.1101/493957 — animal behavior and cognition — Posted on 2018-12-11

1718 Histological evidences of diabetic kidney disease precede clinical diagnosis

Comai, G.; Malvi, D.; Angeletti, A.; Vasuri, F.; Valente, S.; Ambrosi, F.; Capelli, I.; Ravaioli, M.; Pasquinelli, G.; D'Errico, A.; Fornoni, A.; La Manna, G.

10.1101/493890 — scientific communication and education — Posted on 2018-12-11

1719 Adherence to Iron and Folic Acid Supplement and Associated Factors among Antenatal Care Attendant Mothers In Lay Armachiho Health Centers, Northwest, Ethiopia, 2017

Dagne Derso, H.; Agegnehu, G.; Atenafu, A.; Dagnew, B.; GashawAgegnehu, Azeb Atenafu, Henok Dagne, Baye Dagnew,

10.1101/493916 — epidemiology — Posted on 2018-12-11

1720 Degree of urbanization and predation pressure on artificial lepidopteran caterpillars in Cali, Colombia

Cupitra-Rodriguez, J.; Cruz-Bernate, L.; Montoya-Lerma, J.

10.1101/493924 — animal behavior and cognition — Posted on 2018-12-11

1721 Cell type-specific regulation of nutrient absorption, metabolism and transfer in arbuscular mycorrhizal fungi

Kameoka, H.; Maeda, T.; Okuma, N.; Kawaguchi, M.

10.1101/491811 — plant biology — Posted on 2018-12-11

1722 Genetic determination of stomatal patterning in winter wheat (Triticum aestivum L.)

Yates, S. A.; Bruun, A.; Hodel, M.; Grieder, C.; Hund, A.; Walter, A.; Studer, B.

10.1101/490029 — plant biology — Posted on 2018-12-11

1723 Spontaneous driving forces give rise to protein-RNA condensates with coexisting phases and complex material properties

Boeynaems, S.; Holehouse, A. S.; Weinhardt, V.; Kovacs, D.; Van Lindt, J.; Larabell, C.; Van Den Bosch, L.; Das, R.; Tompa, P.; Pappu, R. V.; Gitler, A.

10.1101/492793 — biophysics — Posted on 2018-12-11

1724 The Notch and EGFR signaling regulate caspase inhibitor Diap1 to match supply with intestinal demand

Reiff, T.; Antonello, Z. A.; Ballesta-Illan, E.; Mira, L.; Sala, S.; Navarro, M.; Martinez, L. M.; Dominguez, M.

10.1101/493528 — cell biology — Posted on 2018-12-11

1725 Single cell DNA sequencing reveals distinct molecular types of basal cell carcinoma with unique transcriptome features

Bakker, B.; Terra, J.; Zhou, L.; Racz, E.; Paljic, S.; Garcia-Martinez, J.; Oliveira, V.; Bakker, P. L.; Spierings, D. C. J.; Jonkman, M. F.; Foijer, F.

10.1101/492199 — cancer biology — Posted on 2018-12-11

1726 Cryo-Electron tomography 3D structure and nanoscale model of Arabidopsis thaliana cell wall

Sarkar, P.; Kowalczyk, M.; Apte, S.; Yap, E. G.; Das, J.; Adams, P. D.; Bajaj, C.; Guindos, P.; Auer, M.

10.1101/492140 — plant biology — Posted on 2018-12-10

1727 On the prediction accuracy of movement speed and force from single-trial EEG recordings of healthy volunteers and stroke patients

Gatti, R. H.; Atum, Y. V.; Jochumsen, M.; Biurrun Manresa, J. A.

10.1101/492660 — bioengineering — Posted on 2018-12-10

1728 Cortical and thalamic connectivity of posterior parietal visual cortical areas PPc and PPr of the domestic ferret (Mustela putorius furo).

Dell, L.-A.; Innocenti, G. M.; Hilgetag, C. C.; Manger, P. R.

10.1101/491993 — neuroscience — Posted on 2018-12-10

1729 Structure of a cytochrome-based bacterial nanowire

Filman, D. J.; Marino, S. F.; Ward, J. E.; Yang, L.; Mester, Z.; Bullitt, E.; Lovley, D. R.; Strauss, M.

10.1101/492645 — biophysics — Posted on 2018-12-10

1730 The effect of tissue composition on gene co-expression

Zhang, Y.; Cuerdo, J.; Halushka, M. K.; McCall, M. N.

10.1101/492223 — bioinformatics — Posted on 2018-12-10

1731 Defining the design requirements for an assistive powered hand exoskeleton

Boser, Q. A.; Dawson, M. R.; Schofield, J. S.; Dziwenko, G.; Hebert, J. S.

10.1101/492124 — bioengineering — Posted on 2018-12-10

1732 Design and characterisation of mutant and wild-type huntingtin proteins produced from a toolkit of scalable eukaryotic expression systems

Harding, R. J.; Loppnau, P.; Ackloo, S.; Lemak, A.; Hutchinson, A.; Hunt, B.; Holehouse, A.; Ho, J.; Fan, L.; Toledo-Sherman, L.; Seitova, A.; Arrowsmith, C.

10.1101/492215 — biochemistry — Posted on 2018-12-10

1733 Codon-dependent noise dictates cell-to-cell variability in nutrient poor environments

Balleza, E.; Marshall, L. F.; Kim, J. M.; Cluzel, P.

10.1101/492207 — systems biology — Posted on 2018-12-10

1734 Collateral development and arteriogenesis in hindlimbs of domestic swine after ligation of arterial inflow

Patel, N. S.; Gao, Y.; Aravind, S.; Fugelstad, M.; Casale, G.; Pipinos, I. I.; Carlson, M. A.

10.1101/491928 — physiology — Posted on 2018-12-10

1735 Combining heterogeneous data sources for neuroimaging based diagnosis: re-weighting and selecting what is important

Donini, M.; Monteiro, J. M.; Pontil, M.; Hahn, T.; Fallgatter, A. J.; Shawe-Taylor, J.; Mourao-Miranda, J.

10.1101/484311 — neuroscience — Posted on 2018-12-10

1736 A connectional hub in the rostral anterior cingulate cortex links areas of emotion and cognitive control

Tang, W.; Jbabdi, S.; Cottaar, M.; Zhu, Z.; Grisot, G.; Yendiki, A.; Haber, S. N.

10.1101/492157 — neuroscience — Posted on 2018-12-10

1737 Cortical and thalamic connectivity of temporal visual cortical areas 20a and 20b of the domestic ferret (Mustela putorius furo).

Dell, L.-A.; Innocenti, G. M.; Hilgetag, C. C.; Manger, P. R.

10.1101/492728 — neuroscience — Posted on 2018-12-10

1738 Long-range sensitization in the vertebrate retina and human perception

Naecker, B.; Baccus, S. A.

10.1101/492033 — neuroscience — Posted on 2018-12-10

1739 Complex dietary-polysaccharide modulates gut immune function and microbiota, and promotes protection from autoimmune diabetes

Gudi, R. R.; Perez, N.; Johnson, B. M.; Sofi, M. H.; Brown, R.; Quan, S.; Karumuthil-Melethil, S.; Vasu, C.

10.1101/492637 — immunology — Posted on 2018-12-10

1740 Joint Estimation of Pedigrees and Effective Population Size Using Markov Chain Monte Carlo

Ko, A.; Nielsen, R.

10.1101/492678 — genetics — Posted on 2018-12-10

1741 Regulation of Exocytosis and Mitochondrial Relocalization by Alpha-Synuclein in a Mammalian Cell Model

Ramezani, M.; Wilkes, M. M.; Das, T.; Holowka, D.; Eliezer, D.; Baird, B.

10.1101/492066 — cell biology — Posted on 2018-12-10

1742 Exploration in the wild

Schulz, E.; Bhui, R.; Love, B. C.; Brier, B.; Todd, M. T.; Gershman, S. J.

10.1101/492058 — animal behavior and cognition — Posted on 2018-12-10

1743 Targeting the CaV - interaction yields a selective antagonist of the N-type CaV2.2 channel with broad antinociceptive efficacy

Chefdeville, A.; Yu, J.; Yang, X.; Moutal, A.; Gokhale, V.; Shuja, Z.; Chew, L.; Bellampalli, S. S.; Luo, S.; Francois-Moutal, L.; Ha, T.; Perez-Miller, S.; Park, K. D.; Patwardhan, A. M.; Streicher, J. M.; Colecraft, H. M.; Khanna, M.; Khanna, R.

10.1101/492181 — neuroscience — Posted on 2018-12-10

1744 Niche adaptation limits bacteriophage predation of Vibrio cholerae in a nutrient-poor aquatic environment

Camilli, A.; Silva-Valenzuela, C. A.

10.1101/492439 — microbiology — Posted on 2018-12-10

1745 Real-time capture of horizontal gene transfers from gut microbiota by engineered CRISPR-Cas acquisition

Munck, C.; Sheth, R. U.; Freedberg, D. E.; Wang, H. H.

10.1101/492751 — microbiology — Posted on 2018-12-10

1746 Clinical and Functional Characterization of Melanocortin 4 Receptor genetic variants in African American and/or Hispanic children with severe early onset obesity.

De Rosa, M. C.; Chesi, A.; McCormack, S.; Zhou, J.; Weaver, B.; McDonald, M.; Christensen, S.; Liimatta, K.; Rosenbaum, M.; Hakonarson, H.; Doege, C. A.; Hirschhorn, J. N.; Grant, S. F.; Thaker, V. V.

10.1101/491969 — genetics — Posted on 2018-12-10

1747 In vivo epigenetic editing of sema6a promoter reverses impaired transcallosal connectivity caused by C11orf46/ARL14EP neurodevelopmental risk gene

Peter, C. J.; Saito, A.; Hasegawa, Y.; Tanaka, Y.; Perez, G.; Alway, E.; Espesio-gil, S.; Fayyad, T.; Ratner, C.; Dincer, A.; Gupta, A.; Devi, L.; Pappas, J. G.; Lalonde, F. M.; Butman, J. A.; Han, J. C.; Akbarian, S.; Kamiya, A.

10.1101/491779 — developmental biology — Posted on 2018-12-10

1748 Quantification of microenvironmental metabolites in murine cancer models reveals determinants of tumor nutrient availability

Sullivan, M. R.; Danai, L. V.; Lewis, C. A.; Chan, S. H.; Gui, D. Y.; Kunchok, T.; Dennstedt, E. A.; Vander Heiden, M. G.; Muir, A.

10.1101/492652 — cancer biology — Posted on 2018-12-10

1749 Identification of three sequence motifs in the transcription termination factor Sen1 that mediate direct interactions with Nrd1

Zhang, Y.; Chun, Y.; Buratowski, S.; Tong, L.

10.1101/492736 — biochemistry — Posted on 2018-12-10

1750 SUCCESSFUL DEMONSTRATION OF ASSISTED GENE FLOW IN THE THREATENED CORAL ACROPORA PALMATA ACROSS GENETICALLY-ISOLATED CARIBBEAN POPULATIONS USING CRYOPRESERVED SPERM

Hagedorn, M.; Page, C. A.; ONeill, K.; Flores, D. M.; Tichy, L.; Chamberland, V. F.; Lager, C.; Zuchowicz, N.; Lohr, K.; Blackburn, H.; Vardi, T.; Moore, J.; Moore, T.; Vermeij, M. J. A.; Marhaver, K. L.

10.1101/492447 — zoology — Posted on 2018-12-10

1751 Rapid screening of engineered microbial therapies in a 3-D multicellular model

Harimoto, T.; Singer, Z.; Velazquez, O.; Zhang, J.; Castro, S.; Hinchliffe, T.; Mather, W.; Danino, T.

10.1101/491159 — synthetic biology — Posted on 2018-12-10

1752 Arabidopsis Myosins XI Are Involved in Exocytosis of Cellulose Synthase Complexes

Zhang, W.; Cai, C.; Staiger, C. J.

10.1101/492629 — plant biology — Posted on 2018-12-10

1753 METAGENOMIC SEQUENCING FOR COMBINED DETECTION OF RNA AND DNA VIRUSES IN RESPIRATORY SAMPLES FROM PAEDIATRIC PATIENTS

van Boheemen, S.; van Rijn-Klink, A. L.; Pappas, N.; Carbo, E. C.; Vorderman, R. H. P.; van 't Hof, P. J.; Mei, H.; Claas, E. C. J.; Kroes, A. C. M.; de Vries, J.

10.1101/492835 — microbiology — Posted on 2018-12-10

1754 Immune potentiator for increased safety and improved protection of vaccines by NF-kB modulation

Moser, B. A.; Steinhardt, R. C.; Escalante-Buendia, Y.; Bolt, D. A.; Barker, K. M.; Yoo, S.; McGonnigal, B. G.; Esser-Kahn, A. P.

10.1101/489732 — immunology — Posted on 2018-12-10

1755 Polysaccharide A-dependent opposing effects of mucosal and systemic exposures to human gut commensal Bacteroides fragilis in type 1 diabetes

Sofi, M. H.; Johnson, B. M.; Gudi, R. R.; Jolly, A.; Gaudreau, M.-C.; Vasu, C.

10.1101/492579 — immunology — Posted on 2018-12-10

1756 Netrin/UNC-6 triggers actin assembly and non-muscle myosin activity to drive dendrite retraction in the self-avoidance response.

Sundararajan, L.; Smith, C.; Watson, J.; Millis, B.; Tyska, M.; Miller, D.

10.1101/492769 — developmental biology — Posted on 2018-12-10

1757 Improved yield of AAV2 and rAAV2-retro serotypes following sugar supplementation during the viral production phase

Rego, M.; Hanley, L. M.; Ersing, I.; Guerin, K.; Tasissa, M.; Haery, L.; Mueller, I.; Sanders, E.; Fan, M.

10.1101/488585 — cell biology — Posted on 2018-12-10

1758 VAPPER: High-throughput Variant Antigen Profiling in African trypanosomes

Silva Pereira, S.; Heap, J.; Jones, A. R.; Jackson, A. P.

10.1101/492074 — bioinformatics — Posted on 2018-12-10

1759 Reaction-Diffusion Mechanisms Underlying Hirschprung’s Disease and their Practical Impications

Tozzi, A.

10.1101/492884 — pathology — Posted on 2018-12-10

1760 Maternal brain gain: enlarged representation of the peripersonal space in pregnancy

Cardini, F.; Fatemi-Ghomi, N.; Gajewska-Knapik, K.; Gooch, V.; Aspell, J. E.

10.1101/492017 — neuroscience — Posted on 2018-12-10

1761 Analyzing the brainstem circuits for respiratory chemosensitivity in freely moving mice

Bhandare, A.; Huckstepp, R.; Dale, N.

10.1101/492041 — neuroscience — Posted on 2018-12-10

1762 Identifying conserved molecular mechanisms of thermo-acclimation in symbiotic organisms

Alves Monteiro, H. J.; Brahmi, C.; Mayfield, A. B.; Vidal-Dupiol, J.; Lapeyre, B.; Le Luyer, J.

10.1101/492702 — genomics — Posted on 2018-12-10

1763 A non-Lamarckian model for the inheritance of the epigenetically-coded phenotypic characteristics: a new paradigm for Genetics, Genomics and, above all, Ageing studies

Marsellach, X.

10.1101/492280 — genetics — Posted on 2018-12-10

1764 Effect of aboveground mass removal on toxicity of Geyers larkspur, with important implications for grazing management

Jablonski, K.; Meiman, P. J.

10.1101/492900 — ecology — Posted on 2018-12-10

1765 Cyclosporine A inhibits MRTF-SRF signalling through Na+/K+ ATPase inhibition & Actin remodelling

Burat, B.; Faucher, Q.; Cechova, P.; Arnion, H.; Di Meo, F.; Sauvage, F.-L.; Marquet, P.; Essig, M.

10.1101/492843 — cell biology — Posted on 2018-12-10

1766 Heme oxygenase-1 deficiency affects bone marrow niche and triggers premature exhaustion of hematopoietic stem cells.

Szade, K.; Zukowska, M.; Szade, A.; Nowak, W. N.; Ciesla, M.; Bukowska-Strakova, K.; Gulati, G. S.; Kachamakova-Trojanowska, N.; Kusienicka, A.; Einwallner, E.; Kijowski, J.; Czauderna, S.; Esterbauer, H.; Weissman, I. L.; Dulak, J.; Jozkowicz, A.

10.1101/492850 — cell biology — Posted on 2018-12-10

1767 BRCA2 abrogation triggers innate immune responses potentiated by treatment with PARP inhibitors

Reislander, T.; Puig Lombardi, E.; Groelly, F. J.; Miar, A.; Porru, M.; Wright, B.; Lockstone, H.; Biroccio, A.; Harris, A.; Londono, A.; Tarsounas, M.

10.1101/490268 — cancer biology — Posted on 2018-12-10

1768 A chromosome-scale assembly of the major African malaria vector Anopheles funestus

Ghurye, J.; Koren, S.; Small, S. T.; Redmond, S.; Howell, P.; Phillippy, A. M.; Besansky, N. J.

10.1101/492777 — bioinformatics — Posted on 2018-12-10

1769 Unique unfoldase/aggregase activity of a molecular chaperone that dysregulates a translational elongation factor

Jo, K.-S.; Kim, J.-H.; Ryu, K.-S.; Lee, Y.-H.; Wang, C.-Y.; Kang, J.-S.; Lee, Y.-S.; Seo, M.-D.; Won, H.-S.

10.1101/492876 — biochemistry — Posted on 2018-12-10

1770 Structural Basis for Stereoselective Dehydration and Hydrogen-Bonding Catalysis by the SAM-Dependent Pericyclase LepI

Cai, Y.; Hai, Y.; Ohashi, M.; Jamieson, C. S.; Garcia-Borras, M.; Houk, K. N.; Zhou, J.; Tang, Y.

10.1101/491761 — biochemistry — Posted on 2018-12-10

1771 Cortical excitation:inhibition imbalance causes network specific functional hypoconnectivity: a DREADD-fMRI study

Markicevic, M.; Fulcher, B. D.; Lewis, C.; Helmchen, F.; Rudin, M.; Zerbi, V.; Wenderoth, N.

10.1101/492108 — neuroscience — Posted on 2018-12-10

1772 Development and use of Lentiviral Vectors Pseudotyped with Influenza B Haemagglutinins: application to vaccine immunogenicity, mAb potency and sero-surveillance studies

Ferrara, F.; Carnell, G.; Kinsley, R.; Bottcher-Friebertshauser, E.; Pohlmann, S.; Scott, S.; Fereidouni, S.; Corti, D.; Kellam, P.; Gilbert, S.; Temperton, N. J.

10.1101/492785 — microbiology — Posted on 2018-12-10

1773 Cell-to-cell variation in defective virus expression and effects on host responses during influenza virus infection

Wang, C.; Forst, C. V.; Chou, T.-w.; Geber, A.; Wang, M.; Hamou, W.; Smith, M.; Sebra, R.; Zhang, B.; Zhou, B.; Ghedin, E.

10.1101/487785 — microbiology — Posted on 2018-12-10

1774 Dynamics of microRNA expression during mouse prenatal development

Murad, R.; Rahmanian, S.; Breschi, A.; Zeng, W.; Williams, B. A.; Mackiewicz, M.; Roberts, B.; Meadows, S.; Moore, D.; Davis, C.; Trout, D.; Zaleski, C.; Dobin, A.; Sei, L.-H.; Drenkow, J.; Scavelli, A.; Gingeras, T. R.; Wold, B.; Myers, R. M.; Guigo, R.; Mortazavi, A.

10.1101/492918 — genomics — Posted on 2018-12-10

1775 Nerves innervating copulatory organs show common FMRFamide, FVRIamide, MIP and serotonin immunoreactivity patterns across Dinophilidae (Annelida) indicating their conserved role in copulatory behaviour

Kerbl, A.; Tolstrup, E. W.; Worsaae, K.

10.1101/491886 — evolutionary biology — Posted on 2018-12-10

1776 Interpreting mosquito feeding patterns in Australia through an ecological lens; an analysis of blood meal studies.

Stephenson, E. B.; Murphy, A.; Jansen, C. C.; Peel, A. J.; McCallum, H.

10.1101/492934 — ecology — Posted on 2018-12-10

1777 Functional specialization under multidimensional tradeoffs

Amado, A.; Campos, P.

10.1101/492173 — ecology — Posted on 2018-12-10

1778 Sustained oscillations of epithelial cell sheets

Peyret, G.; Mueller, R.; d'Alessandro, J.; Begnaud, S.; Marcq, P.; Mege, R.-M.; Yeomans, J.; Doostmohammadi, A.; Ladoux, B.

10.1101/492082 — biophysics — Posted on 2018-12-10

1779 An Unsupervised Learning Method for Disease Classification Based on DNA Methylation Signatures

Firouzi, M.; Turinsky, A.; Choufani, S.; Siu, M. T.; Weksberg, R.; Brudno, M.

10.1101/492926 — bioinformatics — Posted on 2018-12-10

1780 Wd*-test: Robust Distance-Based Multivariate Analysis of Variance

Hamidi, B.; Wallace, K.; Vasu, C.; Alekseyenko, A.

10.1101/492413 — bioinformatics — Posted on 2018-12-10

1781 Membrane curvature sensing of the lipid-anchored K-Ras small GTPases

Liang, H.; Mu, H.; Jean-Francois, F.; Lakshman, B.; Sarkar-Banerjee, S.; Zhuang, Y.; Zeng, Y.; Gao, W.; Nissley, D. V.; Gorfe, A. A.; Zhao, W.; Zhou, Y.

10.1101/492710 — biochemistry — Posted on 2018-12-10

1782 The impact of sex on alternative splicing

Karlebach, G.; Veiga, D. F. T.; Deslattes Mays, A.; Kesarwani, A. K.; Danis, D.; Kararigas, G.; Zhang, X. A.; George, J.; Ananda, G.; Steinhaus, R.; Hansen, P.; Seelow, D.; Bizon, C.; Boyles, R.; Ball, C.; McMurry, J. A.; Haendel, M. A.; Yang, J.; Oprea, T.; Mukerji, M.; Anczukow, O.; Banchereau, J.; Robinson, P. N.

10.1101/490904 — genomics — Posted on 2018-12-10

1783 Cryptic and extensive hybridization between ancient lineages of American crows

Slager, D. L.; Epperly, K. L.; Ha, R. R.; Rohwer, S.; Wood, C.; Van Hemert, C.; Klicka, J.

10.1101/491654 — evolutionary biology — Posted on 2018-12-10

1784 A generic multi-level stochastic modelling framework in computational epidemiology

Picault, S.; Huang, Y.-L.; Sicard, V.; Hoch, T.; Vergu, E.; Beaudeau, F.; Ezanno, P.

10.1101/491605 — epidemiology — Posted on 2018-12-10

1785 Deep Residual Learning for Neuroimaging: An application to Predict Progression to Alzheimer’s Disease

Abrol, A.; Bhattarai, M.; Fedorov, A.; Du, Y.; Plis, S.; Calhoun, V.

10.1101/470252 — neuroscience — Posted on 2018-12-10

1786 Exploration Of The Timeliness Of ICD Codes In Administrative Databases: A Nationwide Study

Simon, M.; Rance, B.; Katsahian, S.; Bounebache, K.; Rey, G.; Chatellier, G.; Neuraz, A.; Burgun, A.; Looten, V.

10.1101/491951 — epidemiology — Posted on 2018-12-10

1787 Consequences of measurement error in qPCR telomere data: A simulation study

Nettle, D.; Seeker, L. A.; Nussey, D.; Froy, H.; Bateson, M.

10.1101/491944 — epidemiology — Posted on 2018-12-10

1788 Tissue spatial correlation as cancer marker

Takabayashi, M.; Majeed, H.; Kajdacsy-Balla, A.; Popescu, G.

10.1101/340372 — pathology — Posted on 2018-12-10

1789 Combining transcriptomic and fitness data reveals adaptive and mostly additive plastic responses of gene expression to multiple stress in Tribolium castaneum.

Koch, E. L.; Guillaume, F.

10.1101/442145 — evolutionary biology — Posted on 2018-12-10

1790 Reduced signal for polygenic adaptation of height in UK Biobank

Berg, J. J.; Harpak, A.; Sinnott-Armstrong, N.; Joergensen, A. M.; Mostafavi, H.; Field, Y.; Boyle, E. A.; Zhang, X.; Racimo, F.; Pritchard, J. K.; Coop, G.

10.1101/354951 — evolutionary biology — Posted on 2018-12-10

1791 Mechanical Stretch Kills Transformed Cancer Cells

Tijore, A.; Yao, M.; Wang, Y.-H.; Nematbakhsh, Y.; Hariharan, A.; Lim, C. T.; Sheetz, M.

10.1101/491746 — cell biology — Posted on 2018-12-10

1792 Strategy for Efficient Importing of NAD Analogs

Lei, W.; Yu, D.

10.1101/480269 — bioengineering — Posted on 2018-12-10

1793 A genome-wide analysis of adhesion in Caulobacter crescentus identifies new regulatory and biosynthetic components for holdfast assembly

Hershey, D. M.; Fiebig, A.; Crosson, S.

10.1101/446781 — microbiology — Posted on 2018-12-10

1794 Molecular convergence and positive selection associated with the evolution of symbiont transmission mode in stony corals

Dixon, G. B.; Kenkel, C. D.

10.1101/489492 — evolutionary biology — Posted on 2018-12-10

1795 CALISTA: Clustering And Lineage Inference in Single-Cell Transcriptional Analysis

Papili Gao, N.; Hartmann, T.; Fang, T.; Gunawan, R.

10.1101/257550 — bioinformatics — Posted on 2018-12-10

1796 Metabolically-Driven Maturation of hiPSC-Cell Derived Heart-on-a-Chip

Huebsch, N.; Charrez, B.; Siemons, B.; Boggess, S. C.; Wall, S.; Charwat, V.; Jaeger, K.; Montiel, F. L. T.; Jeffreys, N. C.; Deveshwar, N.; Edwards, A.; Serrano, J.; Snuderl, M.; Stahl, A.; Tveito, A.; Miller, E. W.; Healy, K. E.

10.1101/485169 — bioengineering — Posted on 2018-12-10

1797 A jump distance based parameter inference scheme for particulate trajectories in biological settings

Menssen, R.; Mani, M.

10.1101/238238 — biophysics — Posted on 2018-12-10

1798 Using the NoiSee workflow to measure signal-to-noise ratios of confocal microscopes

Ferrand, A.; Schleicher, K. D.; Ehrenfeuchter, N.; Heusermann, W.; Biehlmaier, O.

10.1101/291500 — biophysics — Posted on 2018-12-10

1799 HMMRATAC, a Hidden Markov ModeleR for ATAC-seq

Tarbell, E. D.; Liu, T.

10.1101/306621 — bioinformatics — Posted on 2018-12-10

1800 Long Range Order and Short Range Disorder in Saccharomyces cerevisiae Biofilm

Piras, V.; Chiow, A.; Selvarajoo, K.

10.1101/451062 — systems biology — Posted on 2018-12-10

1801 Endogenous oxytocin release in periaqueductal gray eases inflammatory pain through long term suppression of pain perception neurons in the spinal cord

Iwasaki, M.; Charlet, A.

10.1101/480319 — neuroscience — Posted on 2018-12-10

1802 DEAH-box helicase 37 (DHX37) defects are a novel molecular etiology of 46,XY gonadal dysgenesis spectrum

da Silva, T. E.; Gomes, N. L.; Lerario, A. M.; Keegan, C. E.; Nishi, M. Y. Y.; Carvalho, F. M.; Vilain, E.; Barseghyan, H.; Martinez-Aguayo, A.; Forclaz, M. V.; Papazian, R.; Carvalho, L. R.; Costa, E. F.; Mendonca, B. B.; Domenice, S.

10.1101/477992 — developmental biology — Posted on 2018-12-10

1803 Towards Spider Glue: Long-read scaffolding for extreme length and repetitious silk family genes AgSp1 and AgSp2 with insights into functional adaptation

Stellwagen, S. D.; Renberg, R. L.

10.1101/492025 — genetics — Posted on 2018-12-10

1804 High-molecular-weight polymers from dietary fiber drive aggregation of particulates in the murine small intestine

Preska Steinberg, A.; Datta, S. S.; Naragon, T.; Rolando, J. C.; Bogatyrev, S. R.; Ismagilov, R. F.

10.1101/490920 — biophysics — Posted on 2018-12-10

1805 Imaging mechanical properties of sub-micron ECM in live zebrafish using Brillouin microscopy

Bevilacqua, C.; Sanchez Iranzo, H.; Richter, D.; Diz-Munoz, A.; Prevedel, R.

10.1101/491803 — bioengineering — Posted on 2018-12-10

1806 CCR3 antagonist impairs estradiol induced eosinophil migration to the uterus in ovariectomized mice

Araujo, J.; Silva, L.; Felix, F.; Camargo, E.; Grespan, R.

10.1101/491860 — physiology — Posted on 2018-12-10

1807 Stability of spontaneous, correlated activity in mouse auditory cortex

Betzel, R.; Wood, K. C.; Angeloni, C.; Neimark Geffen, M.; Bassett, D. S.

10.1101/491936 — neuroscience — Posted on 2018-12-10

1808 Role of pre and post interventions on cervical cancer knowledge levels among women students at the University of Gondar, Gondar, Ethiopia

Indracanti, M.; Berhane, N.; Minyamer, T.

10.1101/492611 — epidemiology — Posted on 2018-12-10

1809 Recovery from fire affects spatial variability of nutrient availability in boreal aspen ecosystems

Das Gupta, S.; MacKenzie, M. D.

10.1101/492389 — ecology — Posted on 2018-12-10

1810 Parameter estimation and identifiability in a neural population model for electro-cortical activity

Hartoyo, A.; Cadusch, P.; Liley, D.; Hicks, D.; Agus Hartoyo Peter J. Cadusch David T. J. Liley Damien G. Hicks,

10.1101/492504 — neuroscience — Posted on 2018-12-10

1811 A generative learning model for saccade adaptation

Cassanello, C.; Ostendorf, F.; Rolfs, M.

10.1101/492512 — neuroscience — Posted on 2018-12-10

1812 Article The Genotype Diversity within the H5N8 Influenza A Subtype

Dalby, A. R.; Tinworth, L.; Iqbal, M.

10.1101/492470 — evolutionary biology — Posted on 2018-12-10

1813 The relative influence of niche versus neutral processes on Ediacaran communities

Mitchell, E. G.; Harris, S.; Kenchington, C.; Vixseboxse, P.; Roberts, L.; Dennis, A.; Clark, C.; Liu, A.; Wilby, P.

10.1101/443275 — ecology — Posted on 2018-12-10

1814 Invariant neural responses for sensory categories revealed by the time-varying information for communication calls

Elie, J. E.; Theunissen, F. E.

10.1101/492546 — neuroscience — Posted on 2018-12-10

1815 Quantitative relationships between SMAD dynamics and target gene activation kinetics in single live cells

Tidin, O.; Friman, E. T.; Naef, F.; Suter, D. M.

10.1101/491894 — molecular biology — Posted on 2018-12-10

1816 A probabilistic model to identify the core microbial community

Gumiere, T.; Meyer, K.; Burns, A. R.; Gumiere, S. J.; Bohannan, B. J. M.; Andreote, F. D.

10.1101/491183 — microbiology — Posted on 2018-12-10

1817 The algae community in taxon Haptophyceae at the early bloom stage of Phaeocystis globosa in Northern Beibu Gulf in winter

Gong, B.; Wu, H.; Ma, J.; Luo, M.; Li, X.; Bin Gong1,2*?Haiping Wu*2?Jixian Ma4?Meimiao Luo2?Xin Li2,

10.1101/492454 — ecology — Posted on 2018-12-10

1818 EXtrACtor, a tool for multiple queries and data extractions from the EXAC and gnomAD database

Mulder, F.; Koeleman, B. P. C.

10.1101/483909 — bioinformatics — Posted on 2018-12-10

1819 Cross-talk between Hippo and Wnt signalling pathways in intestinal crypts: insightsfrom an agent-based model

Ward, D.; Fletcher, A. G.; Homer, M.; Marucci, L.

10.1101/492520 — systems biology — Posted on 2018-12-10

1820 Virus-like vesicles expressing multiple antigens for immunotherapy of chronic hepatitis B

Yarovinsky, T. O.; Mason, S. W.; Menon, M.; Krady, M. M.; Haslip, M.; Madina, B. R.; Moshkani, S.; Chiale, C.; Chattopadhyay Pal, A.; Almassian, B.; Rose, J. K.; Robek, M. D.; Nakaar, V.

10.1101/491985 — immunology — Posted on 2018-12-10

1821 A genome-wide screen identifies genes that suppress the accumulation of spontaneous mutations in young and aged yeast cells

Novarina, D.; Janssens, G.; Bokern, K.; Schut, T.; van Oerle, N.; Kazemier, H.; Veenhoff, L.; Chang, M.

10.1101/492587 — genetics — Posted on 2018-12-10

1822 Optimizing adaptive cancer therapy: dynamic programming and evolutionary game theory

Gluzman, M.; Scott, J. G.; Vladimirsky, A.

10.1101/491829 — cancer biology — Posted on 2018-12-10

1823 Modular, ultra-stable, and highly parallel protein force spectroscopy in magnetic tweezers using peptide linkers

Löf, A.; Walker, P. U.; Sedlak, S. M.; Obser, T.; Brehm, M. A.; Benoit, M.; Lipfert, J.

10.1101/491977 — biophysics — Posted on 2018-12-10

1824 Environmental enrichment on neural plasticity in juvenile Baltic sturgeon (Acipenser oxyrinchus)

Camara-Ruiz, M.; Espirito Santo, C.; Gessner, J.; Wuertz, S.

10.1101/491910 — animal behavior and cognition — Posted on 2018-12-10

1825 Dynamics of microbial contaminants is driven by selection during ethanol production

Queiroz, L. L.; Costa, M. S.; Pereira, A. d. A.; Avila, M. d. P.; Costa, P. S.; Nascimento, A. M. A.; Lacorte, G. A.

10.1101/489500 — microbiology — Posted on 2018-12-10

1826 Genetically distinct clinical subsets, and associations with asthma and eosinophil abundance, within Eosinophilic Granulomatosis with Polyangiitis

Lyons, P.; Peters, J.; Alberici, F.; Liley, J.; Coulson, R.; Astle, W.; Baldini, C.; Bonatti, F.; Cid, M.; Elding, H.; Emmi, G.; Epplen, J.; Guillevin, L.; Jayne, D. R.; Jiang, T.; Gunnarsson, I.; Lamprecht, P.; Leslie, S.; Little, M. A.; Martorana, D.; Moosig, F.; Neumann, T.; Ohlsson, S.; Quickert, S.; Ramirez, G. A.; Rewerska, B.; Schett, G.; Sinico, R. A.; Szczeklik, W.; Tesar, V.; Vukcevic, D.; The European Vasculitis Genetics Consortium, ; Terrier, B.; Watts, R. A.; Vaglio, A.; Holle, J.; Wallace, C.; Smith, K. G.

10.1101/491837 — genetics — Posted on 2018-12-10

1827 Genome-wide association study identifies seven novel loci associating with circulating cytokines and cell adhesion molecules in Finns

Sliz, E.; Kalaoja, M.; Ahola-Olli, A.; Raitakari, O.; Perola, M.; Salomaa, V.; Lehtimaki, T.; Karhu, T.; Viinamaki, H.; Salmi, M.; Santalahti, K.; Jalkanen, S.; Jokelainen, J.; Keinanen-Kiukaanniemi, S.; Mannikko, M.; Herzig, K.-H.; Jarvelin, M.-R.; Sebert, S.; Kettunen, J.

10.1101/491852 — genetics — Posted on 2018-12-10

1828 From: Benjamin LemassonParametric response mapping as a new MRI approach for the characterization of posttraumatic cerebral edema

Greze, J.; Bouzat, P.; Payen de la Garanderie, J. F.; Barbier, E.; Lemasson, B.

10.1101/492298 — neuroscience — Posted on 2018-12-10

1829 Animal virus ecology and evolution are shaped by the virus host-body infiltration and colonization pattern.

Slingenbergh, J.

10.1101/492603 — evolutionary biology — Posted on 2018-12-10

1830 Tracking Pseudomonas aeruginosa transmissions due to environmental contamination after discharge in ICUs using mathematical models

Pham, T. M.; Kretzschmar, M.; Bootsma, M.; Bertrand, X.; COMBACTE-MAGNET Consortium,

10.1101/492538 — epidemiology — Posted on 2018-12-10

1831 Agonist binding affinity determines palmitoylation of the glucagon-like peptide-1 receptor and its functional interaction with plasma membrane nanodomains in pancreatic beta cells

Buenaventura, T.; Laughlin, W. E.; Bitsi, S.; Burgoyne, T.; Lyu, Z.; Oqua, A. I.; Norman, H.; McGlone, E. R.; Klymchenko, A. S.; Correa, I. R.; Walker, A.; Inoue, A.; Hanyaloglou, A.; Rutter, G. A.; Bloom, S. R.; Jones, B.; Tomas, A.

10.1101/492496 — cell biology — Posted on 2018-12-10

1832 Enhancement of chemical constituents in hydrosol and residual water of Aquilaria malaccensis tetraploid

A Rahman, S. S.; Mohd. Saleh, N., Norwati, M., Namasivayam, P., Mahani, C and Kandasamy, KI,

10.1101/492405 — plant biology — Posted on 2018-12-10

1833 Extracellular SPARC improves cardiomyocyte contraction during health and disease

Deckx, S.; Johnson, D. M.; Rienks, M.; Carai, P.; van Deel, E.; van der Velden, J.; Sipido, K.; Heymans, S.; Papageorgiou, A.-P.

10.1101/492363 — physiology — Posted on 2018-12-10

1834 The study on the mechanism of \"oil-spilling\" of wolfberry (Lycium barbarum)fruits during storage

Wang, F.; Xiong, S.; Liu, Y.; Chen, L.; Chen, H.

10.1101/492272 — pharmacology and toxicology — Posted on 2018-12-10

1835 Genotype-matched Newcastle disease virus vaccine confers improved protection against genotype XII challenge: The importance of cytoplasmic tails in viral replication and vaccine design

Izquierdo-Lara, R.; Chumbe, A.; Calderon, K.; Fernandez-Diaz, M.; Vakharia, V. N.

10.1101/492421 — microbiology — Posted on 2018-12-10

1836 Transcriptional profiling elucidates the essential role of glycogen synthase kinase 3 to fruiting body formation in Coprinopsis cinerea

Chan, K. P.; Chang, J.; Xie, Y.; Cheung, M. K.; Ma, K. L.; Kwan, H.

10.1101/492397 — genomics — Posted on 2018-12-10

1837 Chikungunya virus outbreak in the Amazon region: replacement of the Asian genotype by an ECSA lineage

Naveca, F. G.; Claro, I.; Giovanetti, M.; de Jesus, J. G.; Xavier, J.; Iani, F. C. d. M.; do Nascimento, V. A.; de Souza, V. C.; Silveira, P. P.; Lourenco, J.; Santillana, M.; Kraemer, M. U. G.; Quick, J.; Hill, S. C.; Theze, J.; Carvalho, R. D. d. O.; Azevedo, V.; Sales, F. C. d. S.; Nunes, M. R. T.; Lemos, P. d. S.; Candido, D. d. S.; Pereira, G. d. C.; Oliveira, M. A. A.; Meneses, C. A. R.; Maito, R. M.; Cunha, C. R. S. B.; Campos, D. P. d. S.; Castilho, M. d. C.; Siqueira, T. C. d. S.; Terra, T. M.; Albuquerque, C. F. C. d.; Cruz, L. N. d.; Abreu, A. L. d.; Martins, D. V.; Simoes, D. S. d.

10.1101/492595 — epidemiology — Posted on 2018-12-10

1838 Pan-Cancer modelling of genomic alterations through gene expression

Giorgi, F. M.; Ray, F.

10.1101/492561 — systems biology — Posted on 2018-12-10

1839 Stytra: an open-source, integrated system for stimulation, tracking and closed-loop behavioral experiments

Stih, V.; Petrucco, L.; Kist, A. M.; Portugues, R.

10.1101/492553 — neuroscience — Posted on 2018-12-10

1840 Genomic analyses provide insights into genetic architecture of three-way crossbred pigs

Lin, Y.; Tang, Q.; Li, Y.; He, M.; Jin, L.; Ma, J.; Wang, X.; Long, K.; Huang, Z.; Li, X.; Gu, Y.; Li, M.

10.1101/491753 — genomics — Posted on 2018-12-10

1841 Integrated analysis of sex-biased mRNA and miRNA expression profiles in the gonad of the discus fish (Symphysodon aequifasciatus)

Fu, y.; Xu, Z.; Chen, Z.; Wen, B.; Gao, J.

10.1101/492264 — genetics — Posted on 2018-12-10

1842 Reserve size and anthropogenic disturbance affect the density of an African leopard (Panthera pardus) meta-population

Havmoller, R. W.; Tenan, S.; Scharff, N.; Rovero, F.

10.1101/492462 — ecology — Posted on 2018-12-10

1843 Binning microbial genomes using deep learning

Nissen, J. N.; Sonderby, C. K.; Armenteros, J. J. A.; Groenbech, C. H.; Nielsen, H. B.; Petersen, T. N.; Winther, O.; Rasmussen, S.

10.1101/490078 — bioinformatics — Posted on 2018-12-10

1844 How to Build a Fruit: Transcriptomics of a Novel Fruit Type in the Brassiceae

Carey, S.; Hall, J. C.; Mendler, K.

10.1101/492371 — plant biology — Posted on 2018-12-10

1845 Correlations between holistic processing, Autism quotient, extraversion, and experience and the own-gender bias in face recognition

Morgan, M.; Hills, P. J.

10.1101/492322 — neuroscience — Posted on 2018-12-10

1846 Number of children and body composition in later life among men and women: Results from a British birth cohort study

Bridger Staatz, C.; Hardy, R.

10.1101/492314 — epidemiology — Posted on 2018-12-10

1847 Gestational Diabetes Mellitus Is a Risk for Macrosomia: Case- Control Study in Eastern Ethiopia

Wakwoya, E. B.; Amante, T. D.; Tesema, K. F.

10.1101/492355 — epidemiology — Posted on 2018-12-10

1848 To examine environmental pollution by economic growth and their impact in an environmental Kuznets curve (EKC) among developed and developing countries.

Kong, Y.; Khan, R.

10.1101/492348 — ecology — Posted on 2018-12-10

1849 Assessment of Adherence to Antiretroviral Therapy Among Adult People Living with HIV/AIDS in North East, Ethiopia

Mengistie, A.; Birhane, A.; Tesfahun, E.; Adugnaw Birhane and Esubalew Tesfahun,

10.1101/492330 — epidemiology — Posted on 2018-12-10

1850 A Priori Activation of Apoptosis Pathways of Tumor (AAAPT) Technology: Sensitization of Tumor Cells Using Targeted and Cleavable Apoptosis Initiators in Gastric Cancer.

Pandurangi, R. S.; Wu, H.; Li, Y.; Wu Han and Li Yan,

10.1101/492306 — cancer biology — Posted on 2018-12-10

1851 Italian norms and naming latencies for 357 high quality color images

Navarrete, E.; Arcara, G.; Mondini, S.; Penolazzi, B.

10.1101/492256 — animal behavior and cognition — Posted on 2018-12-10

1852 A V0-ATPase-dependent apical trafficking pathway maintains the polarity of the intestinal absorptive membrane

Bidaud-Meynard, A.; Nicolle, O.; Heck, M.; Michaux, G.

10.1101/412122 — cell biology — Posted on 2018-12-10

1853 elPrep: A multithreaded framework for sequence analysis

Herzeel, C.; Costanza, P.; Decap, D.; Fostier, J.; Verachtert, W.

10.1101/492249 — bioinformatics — Posted on 2018-12-10

1854 Selectivity among anti-σ factors by Mycobacterium tuberculosis ClpX influences intracellular levels of Extracytoplasmic Function σ factors

Joshi, A. C.; Kaur, P.; Nair, R.; Lele, D.; Nandicoori, V. K.; Gopal, B.

10.1101/491043 — biochemistry — Posted on 2018-12-10

1855 In-depth proteomic characterization of Schistosoma haematobium: towards the development of new tools for elimination

Sotillo, J.; Pearson, M. S.; Becker, L.; Mekonnen, G. G.; Amoah, A.; van Dam, G.; Corstjens, P. L. A. M.; Mduluza, T.; Mutapi, F.; Loukas, A.

10.1101/486662 — microbiology — Posted on 2018-12-10

1856 Mechanical Stretch Kills Transformed Cancer Cells

Tijore, A.; Yao, M.; Wang, Y.-H.; Nematbakhsh, Y.; Hariharan, A.; Lim, C. T.; Sheetz, M.

10.1101/491746 — cell biology — Posted on 2018-12-10

1857 Clathrin-coated Pits are Shredded Organelles Presorting Receptors in the Plasma Membrane

Kim, D.-H.; Kwon, Y.; Ahn, H. J.; Zhou, K.; Jeong, M. G.; Park, S.; Chang, Y.; Lee, N. K.; Ryu, S. H.

10.1101/491670 — cell biology — Posted on 2018-12-10

1858 Highly specific enrichment of rare nucleic acids using Thermus thermophilus Argonaute

Song, J.; Hegge, J. W.; Mauk, M. G.; Bhagwat, N.; Till, J. E.; Azink, L. T.; Peng, J.; Sen, M.; Chen, J.; Mays, J.; Carpenter, E.; Oost, J. v. d.; Bau, H. H.

10.1101/491738 — molecular biology — Posted on 2018-12-10

1859 Dense geographic and genomic sampling reveals paraphyly and a cryptic lineage in a classic sibling species complex

Linck, E.; Epperly, K.; van Els, P.; Spellman, G. M.; Bryson, R. W.; Canales-del-Castillo, R.; McCormack, J. E.; Klicka, J.

10.1101/491688 — evolutionary biology — Posted on 2018-12-10

1860 Early genomic detection of the Cosmopolitan Genotype of Dengue Virus 2 in Angola, 2018

Hill, S. C.; Vasconcelos, J. N. d.; Granja, B. G.; Theze, J.; Jandondo, D.; Neto, Z.; Mirandela, M.; Sebastiao, C. d. S.; Candido, A. L. M.; Clemente, C.; Silva, S. P. d.; Oliveira, T. d.; Pybubs, O. G.; Faria, N. R.; Afonso, J. M.

10.1101/424747 — epidemiology — Posted on 2018-12-10

1861 Ultra-deep, long-read nanopore sequencing of mock microbial community standards

Nicholls, S. M.; Quick, J. C.; Tang, S.; Loman, N. J.

10.1101/487033 — bioinformatics — Posted on 2018-12-10

1862 Dentate Gyrus Activin Signaling Mediates the Antidepressant Treatment Response

Gergues, M. M.; Yohn, C. N.; Levinstein, M. R.; Samuels, B. A.

10.1101/491613 — neuroscience — Posted on 2018-12-10

1863 Impaired social behaviour and molecular mediators of associated neural circuits during chronic Toxoplasma gondii infection in female mice

Tyebji, S.; Seizova, S.; Garnham, A. L.; Hannan, A. J.; Tonkin, C. J.

10.1101/491662 — neuroscience — Posted on 2018-12-10

1864 Fetal and trophoblast PI3Kp110α have distinct roles in regulating resource supply to the growing fetus

Lopez-Tello, J.; Perez-Garcia, V.; Khaira, J.; Kusinski, L. C.; Cooper, W. N.; Andrani, A.; Grant, I.; Fernandez de Liger, E.; Hemberger, M.; Sandovici, I.; Constancia, M.; Sferruzzi-Perri, A. N.

10.1101/473967 — developmental biology — Posted on 2018-12-10

1865 An integrated transcriptomics and metabolomics analysis of the Cucurbita pepo nectary implicates key modules of primary metabolism involved in nectar synthesis and secretion

Solhaug, E. M.; Roy, R.; Chatt, E. C.; Klinkenberg, P. M.; Mohd-Fadzil, N.-A.; Hampton, M.; Nikolau, B. J.; Carter, C. J.

10.1101/491597 — plant biology — Posted on 2018-12-10

1866 A rationally designed mimotope library for profiling of the human IgM repertoire

Pashov, A. D.; Shivarov, V.; Hadzhieva, M.; Kostov, V.; Ferdinandov, D.; Heinz, K.-M.; Pashova, S.; Todorova, M.; Vassilev, T. L.; Kieber-Emmons, T.; Meza-Zepeda, L. A.; Hovig, E.

10.1101/308973 — immunology — Posted on 2018-12-10

1867 A Systems Mechanism for KRAS Mutant Allele Specific Responses to Targeted Therapy

McFall, T.; Diedrich, J. K.; Mengistu, M.; Littlechild, S. L.; Paskvan, K. V.; Sisk-Hackworth, L.; Moresco, J. J.; Shaw, A. S.; Stites, E. C.

10.1101/491621 — cancer biology — Posted on 2018-12-10

1868 NeoPredPipe: High-Throughput Neoantigen Prediction and Recognition Potential Pipeline

Schenck, R. O.; Lakatos, E.; Gatenbee, C.; Graham, T. A.; Anderson, A. R. A.

10.1101/409839 — bioinformatics — Posted on 2018-12-10

1869 Home ground advantage: local Atlantic salmon have higher reproductive fitness than dispersers in the wild

Mobley, K. B.; Granroth-Wilding, H.; Ellmen, M.; Vaha, J.-P.; Aykanat, T.; Johnston, S. E.; Orell, P.; Erkinaro, J.; Primmer, C. R.

10.1101/311258 — evolutionary biology — Posted on 2018-12-10

1870 Origin of gibberellin-dependent transcriptional regulation by molecular exploitation of a transactivation domain in DELLA proteins

Hernandez-Garcia, J.; Briones-Moreno, A.; Dumas, R.; Blazquez, M. A.

10.1101/398883 — evolutionary biology — Posted on 2018-12-10

1871 Searching and mapping genomic subsequences in nanopore raw signals through novel dynamic time warping algorithms

Han, R.; Wang, S.; Gao, X.

10.1101/491456 — bioinformatics — Posted on 2018-12-10

1872 A Novel Workflow for Health Survey Analysis: Results on the Yazd Health Study (YaHS)

Heidari, E.; Balazadeh-Meresht, V.; Ahmadi, N.; Sharifi-Zarchi, A.; Mirzaei, M.; Sadr-Bafghi, M.

10.1101/491142 — bioinformatics — Posted on 2018-12-10

1873 The consensus molecular classification of muscle-invasive bladder cancer

Kamoun, A.; de Reynies, A.; Allory, Y.; Sjodahl, G.; Robertson, A. G.; Seiler, R.; Hoadley, K.; Al-Ahmadie, H.; Choi, W.; Groeneveld, C. S.; Castro, M. A. A.; Fontugne, J.; Eriksson, P.; Mo, Q.; Kardos, J.; Zlotta, A.; Hartmann, A.; Dinney, C. P.; Bellmunt, J.; Powles, T.; Malats, N.; Chan, K. S.; Kim, W. Y.; McConkey, D. J.; Black, P. C.; Dyrskjot, L.; Hoglund, M.; Lerner, S. P.; Real, F. X.; Radvanyi, F.; The Bladder Cancer Molecular Taxonomy Group,

10.1101/488460 — cancer biology — Posted on 2018-12-10

1874 A Novel Workflow for Health Survey Analysis: Results on the Yazd Health Study (YaHS)

Heidari, E.; Balazadeh-Meresht, V.; Ahmadi, N.; Sharifi-Zarchi, A.; Mirzaei, M.; Sadr-Bafghi, M.

10.1101/491142 — bioinformatics — Posted on 2018-12-10

1875 Hepatocyte-specific deletion of Pparα promotes NASH in the context of obesity

Regnier, M.; Polizzi, A.; Smati, S.; Lukowicz, C.; Fougerat, A.; Lippi, Y.; Fouche, E.; Lasserre, F.; Naylies, C.; Betoulieres, C.; Barquissau, V.; Mouisel, E.; Bertrand-Michel, J.; Batut, A.; Al Saati, T.; Canlet, C.; Tremblay-Franco, M.; Ellero-Simatos, S.; Langin, D.; Postic, C.; Wahli, W.; Loiseau, N.; Guillou, H.; Montagner, A.

10.1101/488031 — pathology — Posted on 2018-12-10

1876 Metastable brain waves

Roberts, J. A.; Gollo, L. L.; Abeysuriya, R.; Roberts, G.; Mitchell, P. B.; Woolrich, M. W.; Breakspear, M.

10.1101/347054 — neuroscience — Posted on 2018-12-10

1877 Norovirus infection results in assembly of virus-specific G3BP1 granules and evasion of eIF2α signaling.

Brocard, M.; Iadevaia, V.; Klein, P.; Hall, B.; Lewis, G.; Lu, J.; Burke, J.; Parker, R.; Ruggieri, A.; Goodfellow, I.; Locker, N.

10.1101/490318 — microbiology — Posted on 2018-12-10

1878 BOLD signal variability and complexity in children and adolescents with and without autism spectrum disorder

Easson, A. K.; McIntosh, A. R.

10.1101/491720 — neuroscience — Posted on 2018-12-10

1879 Predictive validity of effective shunt fraction in critically ill patients

Chang, E. M.-l.; Bretherick, A.; Drummond, G.; Baillie, J. K.

10.1101/491167 — physiology — Posted on 2018-12-10

1880 Identification of spatially variable genes with graph cuts

Zhang, K.; Feng, W.; Wang, P.

10.1101/491472 — bioinformatics — Posted on 2018-12-09

1881 Influence of nutritional tyrosine on cognition and functional connectivity in healthy old humans

Hensel, C.; Becker, M.; Duezel, S.; Demuth, I.; Norman, K.; Steinhagen-Thiessen, E.; Gallinat, J.; Lindenberger, U.; Kuehn, S.

10.1101/450650 — neuroscience — Posted on 2018-12-09

1882 Uncovering the role admixture in health disparities: Association of hepatocyte gene expression and DNA methylation to African Ancestry in African-Americans.

Park, S. C.; De, T.; Xu, Y.; Zhoug, Y.; Smithberger, E.; Alarcon, C.; Perera, M.

10.1101/491225 — genomics — Posted on 2018-12-09

1883 Fractional Deletion Of Compound Kushen Injection, A Natural Compound Mixture, Indicates Cytokine Signaling Pathways Are Critical For Its Perturbation Of The Cell Cycle.

Aung, T. N.; Nourmohammadi, S.; Qu, Z.; Harata-Lee, Y.; Cui, J.; Shen, H.; Yool, A. J.; Pukala, T.; Du, H.; Kortschak, D.; Adelson, D. L.

10.1101/462135 — pharmacology and toxicology — Posted on 2018-12-09

1884 Genetic combination risk for schizophrenia

Oishi, K.; Iyo, M.; Niitsu, T.; Takase, M.; Sato, Y.; Kanahara, N.

10.1101/478958 — neuroscience — Posted on 2018-12-09

1885 Tumors induce de novo steroid biosynthesis in T cells to evade immunity

Mahata, B.; Pramanik, J.; Weyden, L. v. d.; Kar, G.; Riedel, A.; Fonseca, N. A.; Kundu, K.; Ryder, E.; Duddy, G.; Walczak, I.; Davidson, S.; Okkenhaug, K.; Adams, D. J.; Shields, J. D.; Teichmann, S. A.

10.1101/471359 — immunology — Posted on 2018-12-09

1886 Tracking genetic invasions: genome-wide SNPs reveal the source of pyrethroid-resistant Aedes aegypti (yellow fever mosquito) incursions at international ports

Schmidt, T.; van Rooyen, A. R.; Chung, J.; Endersby-Harshman, N. M.; Griffin, P. C.; Sly, A.; Hoffmann, A. A.; Weeks, A. R.

10.1101/490714 — genomics — Posted on 2018-12-09

1887 The Landscape of Parkin Variants Reveals Pathogenic Mechanisms and Therapeutic Targets in PD

Yi, W.; MacDougall, E. J.; Tang, M.; Roldan, A. K.; Gan-Or, Z.; Trempe, J.-F.; Fon, E. A.

10.1101/445551 — neuroscience — Posted on 2018-12-09

1888 The geometry of abstraction in hippocampus and prefrontal cortex

Bernardi, S.; Benna, M. K.; Rigotti, M.; Munuera, J.; Fusi, S.; Salzman, D.

10.1101/408633 — neuroscience — Posted on 2018-12-09

1889 MicroRNA-27a mitigates hyperlipidemia and atherosclerosis by modulating cholesterol homeostasis

Khan, A. A.; Agarwal, H.; Reddy, S. S.; Arige, V.; Gupta, V.; Kalyani, A.; Reddy, G. B.; Dikshit, M.; Barthwal, M. K.; Mahapatra, N. R.

10.1101/383448 — molecular biology — Posted on 2018-12-09

1890 Integration of anatomy ontologies and evo-devo using structured Markov models suggests a new framework for modeling discrete phenotypic traits

Tarasov, S.

10.1101/188672 — evolutionary biology — Posted on 2018-12-09

1891 Identification of N-linked glycans as specific mediators of neuronal uptake of acetylated α-Synuclein

Birol, M.; Wojcik, S. P.; Miranker, A. D.; Rhoades, E.

10.1101/407247 — biophysics — Posted on 2018-12-09

1892 Replication Timing Networks: a novel class of gene regulatory networks

Rivera-Mulia, J. C.; Kim, S.; Gabr, H.; Chakraborty, A.; Ay, F.; Kahveci, T.; Gilbert, D. M.

10.1101/186866 — systems biology — Posted on 2018-12-09

1893 Reference trait analysis reveals correlations between gene expression and quantitative traits in disjoint samples

Skelly, D. A.; Raghupathy, N.; Robledo, R. F.; Graber, J. H.; Chesler, E. J.

10.1101/489542 — genomics — Posted on 2018-12-09

1894 Symmetric Intralimb Transfer of Skilled Isometric Force Production

Rajan, V. A.; Hardwick, R. M.; Celnik, P. A.

10.1101/491415 — neuroscience — Posted on 2018-12-09

1895 The abundance of Nudix hydrolase 16 transcripts is elevated in human sepsis: perspectives gained during a hands-on reductionist investigation workshop.

Garand, M.; Rinchai, D.; Kabeer, B. S. A.; Toufiq, M.; Alfaki, M.; Roelands, J.; Hendrickx, W.; Boughorbel, S.; Marr, N.; Bedognetti, D.; Chaussabel, D.

10.1101/490565 — immunology — Posted on 2018-12-09

1896 The singularity of Cetacea behaviour parallels the complete inactivation of melatonin gene modules

Lopes-Marques, M.; Ruivo, R.; Alves, L. Q.; Sousa, N.; Machado, A. M.; Castro, L. F. C.

10.1101/490219 — evolutionary biology — Posted on 2018-12-09

1897 Characterizing and minimizing the contribution of sensory inputs to TMS-evoked potentials

Biabani, M.; Fornito, A.; Mutanen, T. P.; Morrow, J.; Rogasch, N. C.

10.1101/489864 — neuroscience — Posted on 2018-12-09

1898 Basal Role for Nrf2-transgne on transcriptional (mRNA/miRNA) regulation in the mouse myocardium

Jyothidasan, A.; Shanmugam, G.; Zhang, J.; Dally, B.; Crossman, D.; Namakkal Soorappan, R.

10.1101/490953 — molecular biology — Posted on 2018-12-09

1899 Longitudinally persistent cerebrospinal fluid B-cells resist treatment in multiple sclerosis

Greenfield, A. L.; Dandekar, R.; Ramesh, A.; Eggers, E. L.; Wu, H.; Laurent, S.; Harkin, W.; Pierson, N. S.; Weber, M. S.; Henry, R. G.; Bischof, A.; Cree, B. A. C.; Hauser, S. L.; Wilson, M. R.; von Büdingen, H.- C.

10.1101/490938 — immunology — Posted on 2018-12-09

1900 Rapid functional divergence of grass duplicate genes

Jiang, X.; Assis, R.

10.1101/490524 — evolutionary biology — Posted on 2018-12-09

1901 PathoPhenoDB: linking human pathogens to their disease phenotypes in support of infectious disease research

Kafkas, S.; Abdelhakim, M.; Hashish, Y.; Kulmanov, M.; Abdellatif, M.; Schofield, P. N.; Hoehndorf, R.

10.1101/489971 — bioinformatics — Posted on 2018-12-09

1902 Circulating CD4+ memory T cells give rise to a CD69+ resident memory T cell population in non-inflamed human skin

Klicznik, M. M.; Benedetti, A.; Stoecklinger, A.; Campbell, D. J.; Gratz, I. K.

10.1101/490094 — immunology — Posted on 2018-12-09

1903 Predicting Methylation from Sequence and Gene Expression Using Deep Learning with Attention

Levy-Jurgenson, A.; Tekpli, X.; Kristensen, V. N.; Yakhini, Z.

10.1101/491357 — bioinformatics — Posted on 2018-12-09

1904 Toxicity of JUUL Fluids and Aerosols Correlates Strongly with Nicotine and Some Flavor Chemical Concentrations

Omaiye, E.; McWhirter, K. J.; Luo, W.; Pankow, J. F.; Talbot, P.

10.1101/490607 — pharmacology and toxicology — Posted on 2018-12-09

1905 L-Norvaline, a New Therapeutic Agent against Alzheimer s disease.

Polis, B.; Srikanth, K. D.; Gurevich, V.; Gil-Henn, H.; Samson, A. O.

10.1101/491480 — neuroscience — Posted on 2018-12-09

1906 Norovirus infection results in assembly of virus-specific G3BP1 granules and evasion of eIF2α signaling.

Brocard, M.; Iadevaia, V.; Klein, P.; Hall, B.; Lewis, G.; Lu, J.; Burke, J.; Parker, R.; Ruggieri, A.; Goodfellow, I.; Locker, N.

10.1101/490318 — microbiology — Posted on 2018-12-09

1907 Using DNA from mothers and children to study parental investment in children’s educational attainment

Wertz, J.; Moffitt, T. E.; Agnew-Blais, J.; Arseneault, L.; Belsky, D. W.; Corcoran, D. L.; Houts, R.; Matthews, T.; Prinz, J. A.; Richmond-Rakerd, L. S.; Sugden, K.; Williams, B.; Caspi, A.

10.1101/489781 — genetics — Posted on 2018-12-09

1908 CANCER V-ATPase EXPRESSION SIGNATURES: A DISTINCTIVE BALANCE OF SUBUNIT C ISOFORMS IN ESOPHAGEAL CARCINOMA

do Couto Vieira Carvalho dos Santos, J.; Nicolau Neto, P.; Pessoa Costa, E.; Firme Figueira, F.; de Almeida Simao, T.; Okorokova-Facanha, A.; Ribeiro Pinto, L. F.; Rocha Facanha, A.

10.1101/489856 — cancer biology — Posted on 2018-12-09

1909 A Novel Workflow for Helth Survey Analysis: Results on the Yazd Health Study (YaHS)

Heidari, E.; Balazadeh-Meresht, V.; Ahmadi, N.; Sharifi-Zarchi, A.; Mirzaei, M.; Sadr-Bafghi, M.

10.1101/491142 — bioinformatics — Posted on 2018-12-09

1910 CarbMetSim: A Discrete-Event Simulator for Carbohydrate Metabolism in Humans

Aydas, B.; Ghazaleh, H.; Goyal, M.

10.1101/491019 — bioinformatics — Posted on 2018-12-09

1911 Identification of A Disintegrin and Metalloproteinase 9 domain (ADAM9) required in the early stages of encephalomyocarditis virus infection

Bazzone, L. E.; King, M.; MacKay, C. R.; Kyawe, P. P.; Meraner, P.; Lindstrom, D.; Rojas-Quintero, J.; Owen, C. A.; Wang, J. P.; Brass, A. L.; Kurt-Jones, E. A.; Finberg, R. W.

10.1101/491068 — microbiology — Posted on 2018-12-09

1912 Activation and in vivo evolution of the MAIT cell transcriptome in mice and humans reveals diverse functionality

Hinks, T. S. C.; Marchi, E.; Jabeen, M.; Olshansky, M.; Kurioka, A.; Pediongco, T. J.; Meehan, B. S.; Kostenko, L.; Turner, S. J.; Corbett, A. J.; Chen, Z.; Klenerman, P.; McCluskey, J.

10.1101/490649 — immunology — Posted on 2018-12-09

1913 Linking micro and macroevolution in the presence of migration

Duchen, P.; Hautphenne, S.; Lehmann, L.; Salamin, N.

10.1101/490128 — evolutionary biology — Posted on 2018-12-09

1914 The conflict between adaptation and dispersal for maintaining biodiversity in changing environments

Thompson, P. L.; Fronhofer, E. A.

10.1101/490722 — ecology — Posted on 2018-12-09

1915 Exploration of the immune cell landscape in brain cancer utilizing gene expression and copy number data

Gusev, Y.; Bhuvaneshwar, K.; Madhavan, S.

10.1101/490599 — bioinformatics — Posted on 2018-12-09

1916 Dissociating task acquisition from expression during learning reveals latent knowledge

Kuchibhotla, K. V.; Hindmarsh Sten, T.; Papadoyannis, E. C.; Elnozahy, S.; Fogelson, K.; Kumar, R.; Boubenec, Y.; Holland, P. C.; Ostojic, S.; Froemke, R. C.

10.1101/489450 — neuroscience — Posted on 2018-12-09

1917 Peer pressure from a Proteus mirabilis self-recognition system controls participation in cooperative swarm motility

Tipping, M. J.; Gibbs, K. A.

10.1101/490771 — microbiology — Posted on 2018-12-09

1918 Uncovering the role admixture in health disparity: characterization of hepatocyte gene expression and DNA methylation in African-Americans

Park, S. C.; De, T.; Xu, Y.; Zhoug, Y.; Smithberger, E.; Alarcon, C.; Perera, M.

10.1101/491225 — genomics — Posted on 2018-12-09

1919 Anatomical diversification of a skeletal novelty in bat feet

Stanchak, K. E.; Arbour, J. H.; Santana, S. E.

10.1101/490854 — evolutionary biology — Posted on 2018-12-09

1920 Silent crickets reveal the genomic footprint of recent adaptive trait loss

Pascoal, S.; Risse, J. E.; Zhang, X.; Blaxter, M.; Cezard, T.; Challis, R. J.; Gharbi, K.; Hunt, J.; Kumar, S.; Langan, E.; Liu, X.; Rayner, J. G.; Ritchie, M. G.; Snoek, B. L.; Trivedi, U.; Bailey, N.

10.1101/489526 — evolutionary biology — Posted on 2018-12-09

1921 Integrating hierarchical statistical models and machine learning algorithms for ground-truthing drone images of the vegetation: taxonomy, abundance and population ecological models

Damgaard, C.

10.1101/491381 — ecology — Posted on 2018-12-09

1922 Tax4Fun2: a R-based tool for the rapid prediction of habitat-specific functional profiles and functional redundancy based on 16S rRNA gene marker gene sequences

Wemheuer, F.; Taylor, J. A.; Daniel, R.; Johnston, E.; Meinicke, P.; Thomas, T.; Wemheuer, B.

10.1101/490037 — bioinformatics — Posted on 2018-12-09

1923 Cosolvent Effects on the Growth of Protein Aggregates Formed by a Single Domain Globular Protein and an Intrinsically Disordered Protein

Mondal, B.; Reddy, G.

10.1101/490136 — biochemistry — Posted on 2018-12-09

1924 Rapid Proteomic Screen of CRISPR Experiment Outcome by Data Independent Acquisition Mass Spectrometry: A Case Study for HMGN1

Mehnert, M.; Li, W.; Wu, C.; Salovska, B.; Liu, Y.

10.1101/490763 — systems biology — Posted on 2018-12-09

1925 Comparative Transcriptomes Analysis of Taenia pisiformis at Different Development Stages

Chen, L.; Jing, Y.; Xu, J.; Wang, W.; Ji, L.; Yang, C.; Yu, H.

10.1101/490276 — molecular biology — Posted on 2018-12-09

1926 A novel qacA allele results in an elevated chlorhexidine gluconate minimum inhibitory concentration in cutaneous Staphylococcus epidermidis isolates

Addetia, A.; Greninger, A. L.; Adler, A.; Yuan, S.; Makhsous, N.; Qin, X.; Zerr, D. M.

10.1101/490805 — microbiology — Posted on 2018-12-09

1927 Tracking genetic invasions: genome-wide SNPs reveal the source of pyrethroid-resistant Aedes aegypti (yellow fever mosquito) incursions at international ports

Schmidt, T.; van Rooyen, A. R.; Chung, J.; Endersby-Harshman, N. M.; Griffin, P. C.; Sly, A.; Hoffmann, A. A.; Weeks, A. R.

10.1101/490714 — genomics — Posted on 2018-12-09

1928 Exact distribution of divergence times from fossil ages and tree topologies

Didier, G.; Laurin, M.

10.1101/490003 — evolutionary biology — Posted on 2018-12-09

1929 Inferring Processes of Coevolutionary Diversification in a Community of Panamanian Strangler Figs and Associated Pollinating Wasps

Satler, J. D.; Herre, A.; Jander, C.; Eaton, D. A. R.; Machado, C. A.; Heath, T. A.; Nason, J. D.

10.1101/490862 — evolutionary biology — Posted on 2018-12-09

1930 Proteomic and Genomic Signatures of Repeat-instability in Cancer and Adjacent Normal Tissues

Persi, E.; Prandi, D.; Wolf, Y. I.; Pozniak, Y.; Barbieri, C.; Gasperini, P.; Beltran, H.; Faltas, B. M.; Rubin, M. A.; Geiger, T.; Koonin, E. V.; Demichelis, F.; Horn, D.

10.1101/491423 — cancer biology — Posted on 2018-12-09

1931 Deciphering complex metabolite mixtures by unsupervised and supervised substructure discovery and semi-automated annotation from MS/MS spectra

Rogers, S.; Wei Ong, C.; Wandy, J.; Ernst, M.; Ridder, L.; van der Hooft, J. J. J.

10.1101/491506 — bioinformatics — Posted on 2018-12-09

1932 GeTallele: a mathematical model and a toolbox for integrative analysis and visualization of DNA and RNA allele frequencies

Słowinski, P. M.; Li, M.; Restrepo, P.; Alomran, N.; Spurr, L.; Miller, C.; Tsaneva-Atanasova, K.; Horvath, A.

10.1101/491209 — bioinformatics — Posted on 2018-12-09

1933 A novel NO-dependent \"molecular-memory-switch\" mediates presynaptic expression and postsynaptic maintenance of LTP in the octopus brain

Turchetti-Maia, A. L.; Stern-Mentch, N.; Bidel, F.; Nesher, N.; Shomrat, T.; Hochner, B.

10.1101/491340 — neuroscience — Posted on 2018-12-09

1934 Cortical and thalamic connectivity of occipital visual cortical areas 17, 18, 19 and 21 of the domestic ferret (Mustela putorius furo).

Dell, L.-A.; Innocenti, G. M.; Hilgetag, C. C.; Manger, P. R.

10.1101/491399 — neuroscience — Posted on 2018-12-09

1935 Selective roles of vertebrate PCF11 in premature and full-length transcript termination

Kamieniarz-Gdula, K.; Gdula, M. R.; Panser, K.; Nojima, T.; Monks, J.; Wisniewski, J. R.; Riepsaame, J.; Brockdorff, N.; Pauli, A.; Proudfoot, N. J.

10.1101/491514 — molecular biology — Posted on 2018-12-09

1936 DEEPScreen: High Performance Drug-Target Interaction Prediction with Convolutional Neural Networks Using 2-D Structural Compound Representations

Rifaioglu, A. S.; Atalay, V.; Martin, M. J.; Cetin-Atalay, R.; Dogan, T.

10.1101/491365 — bioinformatics — Posted on 2018-12-09

1937 A practical method for efficient and optimal production of selenomethionine-labeled recombinant protein complexes in the insect cells

Wenzel, S.; Imasaki, T.; Takagi, Y.

10.1101/491548 — biochemistry — Posted on 2018-12-09

1938 A Mechanism of Real-Time Noise Modulation in Neurons

Venugopal, S.; Seki, S.; Terman, D. H.; Pantazis, A.; Olcese, R.; Wiedau-Pazos, M.; Chandler, S. H.

10.1101/491324 — neuroscience — Posted on 2018-12-09

1939 A microbial metabolite, Lithocholic acid, suppresses IFN-γ and AhR expression by human cord blood CD4 T cells

Nikolai, A.; Iwashima, M.

10.1101/491241 — immunology — Posted on 2018-12-09

1940 Identification of spatially variable genes with graph cuts

Zhang, K.; Feng, W.; Wang, P.

10.1101/491472 — bioinformatics — Posted on 2018-12-09

1941 Searching and mapping genomic subsequences in nanopore raw signals through novel dynamic time warping algorithms

Han, R.; Wang, S.; Gao, X.

10.1101/491456 — bioinformatics — Posted on 2018-12-09

1942 simuG: a general-purpose genome simulator

Yue, J.-X.; Liti, G.

10.1101/491498 — bioinformatics — Posted on 2018-12-09

1943 Expansion, Exploitation and Extinction: Niche Construction in Ephemeral Landscapes

Wetherington, M. T.; Keymer, J. E.

10.1101/489096 — ecology — Posted on 2018-12-09

1944 Short-wavelength cone signals contribute to sparse, high-dimensional color tuning in primate OFF midget ganglion cells

Wool, L. E.; Packer, O.; Zaidi, Q.; Dacey, D. M.

10.1101/482653 — neuroscience — Posted on 2018-12-09

1945 Bursts and constraints generate a rainbow in the lorikeets

Merwin, J. T.; Smith, B. T.; Seeholzer, G. F.

10.1101/489419 — evolutionary biology — Posted on 2018-12-09

1946 Embryo geometry drives formation of robust signaling gradients through receptor localization

Zhang, Z.; Zwick, S.; Loew, E.; Grimley, J. S.; Ramanathan, S.

10.1101/491290 — developmental biology — Posted on 2018-12-09

1947 Inferring biochemical reactions and metabolite structures to cope with metabolic pathway drift

Belcour, A.; Girard, J.; Aite, M.; Delage, L.; Trottier, C.; Marteau, C.; Leroux, C.; Dittami, S.; Sauleau, P.; corre, e.; Nicolas, J.; Boyen, C.; Leblanc, C.; Collen, J.; Siegel, A.; Markov, G.

10.1101/462556 — systems biology — Posted on 2018-12-09

1948 Evidence of functional long-range Wnt/Wg in the developing Drosophila wing epithelium

Chaudhary, V.; Boutros, M.

10.1101/412627 — developmental biology — Posted on 2018-12-09

1949 The dynamic association of SPO11-1 with conformational changes of meiotic axial elements in maize

Ronceret, A.; Golubovskaya, I.; Ku, J.-C.; Lee, D. H.; Timofejeva, L.; Angoa, A. K. G.; Kao, Y.-H.; Kremling, K.; Williams-Carrier, R.; Meeley, R.; Barkan, A.; Cande, W. Z.; Wang, C.-J. R.

10.1101/489278 — molecular biology — Posted on 2018-12-09

1950 Detection of novel and resident marine species using environmental DNA metabarcoding of sediment and water

Holman, L. E.; de Bruyn, M.; Creer, S.; Carvalho, G.; Robidart, J.; Rius, M.

10.1101/440768 — molecular biology — Posted on 2018-12-09

1951 Assignment of virus and antimicrobial resistance genes to microbial hosts in a complex microbial community by combined long-read assembly and proximity ligation

Bickhart, D.; Watson, M.; Koren, S.; Panke-Buisse, K.; Cersosimo, L. M.; Press, M. O.; Van Tassell, C. P.; Van Kessel, J. A. S.; Haley, B. J.; Kim, S. W.; Heiner, C.; Suen, G.; Bakshy, K.; Liachko, I.; Sullivan, S. T.; Ghurye, J.; Pop, M.; Weimer, P. J.; Phillippy, A. M.; Smith, T. P. L.

10.1101/491175 — microbiology — Posted on 2018-12-09

1952 Transcriptomic biomarkers for prediction/classification of sample conditions in marine microeukaryotes (diatoms)

Ashworth, J.

10.1101/491258 — microbiology — Posted on 2018-12-09

1953 Arp2/3 complex-dependent spatial organization of the B cell receptor (BCR) impacts immune synapse formation, BCR signaling and B cell activation

Bolger-Munro, M.; Choi, K.; Scurll, J.; Abraham, L.; Chappell, R.; Sheen, D.; Dang-Lawson, M.; Wu, X.; Priatel, J. J.; Coombs, D.; Hammer, J. A.; Gold, M. R.

10.1101/490698 — immunology — Posted on 2018-12-09

1954 Generating closed bacterial genomes from long-read nanopore sequencing of microbiomes

Moss, E. L.; Bhatt, A. S.

10.1101/489641 — genomics — Posted on 2018-12-09

1955 The distribution of epistasis on simple fitness landscapes

Fraisse, C.; Welch, J. J.

10.1101/490573 — evolutionary biology — Posted on 2018-12-09

1956 Type-I myosins promote actin polymerization to drive membrane bending in endocytosis

Manenschijn, H. E.; Picco, A.; Mund, M.; Ries, J.; Kaksonen, M.

10.1101/490011 — cell biology — Posted on 2018-12-09

1957 Activation of the epidermal growth factor receptor initiates innate immune responses during oropharyngeal candidiasis

Swidergall, M.; Solis, N.; Phan, Q.; Lazarus, M. D.; Wang, Z.; Filler, S. G.

10.1101/491076 — microbiology — Posted on 2018-12-09

1958 Geometry alone influences stem cell differentiation in a precision 3D printed stem cell niche

Prina, E.; Sidney, L.; Tromayer, M.; Moore, J.; Liska, R.; Bertolin, M.; Ferrari, S.; Hopkinson, A.; Dua, H.; Yang, J.; Wildman, R.; Rose, F. R.

10.1101/489773 — bioengineering — Posted on 2018-12-09

1959 Smart computational exploration of stochastic gene regulatory network models using human-in-the-loop semi-supervised learning

Wrede, F.; Hellander, A.

10.1101/490623 — systems biology — Posted on 2018-12-08

1960 A Multi-Scale Modelling Framework of the Whole Human Body Based on Multi-Objective Functions

Khaksar, M.; Cluett, W.; Mahadevan, R.

10.1101/477703 — systems biology — Posted on 2018-12-09

1961 Effect of diapause on cold-resistance in different life-stages of an aphid parasitoid wasp

Tougeron, K.; Blanchet, L.; van Baaren, J.; Le Lann, C.; Brodeur, J.

10.1101/489427 — ecology — Posted on 2018-12-08

1962 Combinations of slow translating codon clusters can increase mRNA half-life

Sharma, A. K.; O'Brien, E. P.

10.1101/490995 — biophysics — Posted on 2018-12-08

1963 A Chemical Kinetic Basis for Measuring Translation Initiation and Elongation Rates from Ribosome Profiling data

Sharma, A.; Sormanni, P.; Ahmed, N.; Ciryam, P.; Friedrich, U. A.; Kramer, G.; O'Brien, E. P.

10.1101/490730 — bioinformatics — Posted on 2018-12-08

1964 Robust and Structural Ergodicity Analysis and Antithetic Integral Control of a Class of Stochastic Reaction Networks

Briat, C.; Khammash, M.

10.1101/481051 — systems biology — Posted on 2018-12-08

1965 Wnt/β-catenin signaling is required for the development of multiple nephron segments

Deacon, P.; Concodora, C. W.; Chung, E.; Park, J.-S.

10.1101/488718 — developmental biology — Posted on 2018-12-08

1966 Targeting the CALCB/RAMP1-axis inhibits growth of Ewing sarcoma

Dallmayer, M.; Li, J.; Ohmura, S.; Alba-Rubio, R.; Baldauf, M. C.; Hoelting, T. L. B.; Musa, J.; Knott, M. M. L.; Stein, S.; Cidre-Aranaz, F.; Wehweck, F. S.; Romero-Perez, L.; Gerke, J. S.; Orth, M. F.; Marchetto, A.; Kirchner, T.; Bach, H.; Sannino, G.; Grunewald, T. G. P.

10.1101/491100 — cancer biology — Posted on 2018-12-08

1967 Atomic Level Characterisation of Millisecond-Time Scale Protein Motions through a Combined Molecular Simulations and NMR Approach

Juarez-Jimenez, J.; Gupta, A. A.; Karunanithy, G.; Mey, A.; Georgiou, C.; Ioannidis, C.; De Simone, A.; Barlow, P. N.; Hulme, A. N.; Walkinshaw, M. D.; Baldwin, A. J.; Michel, J.

10.1101/490987 — biophysics — Posted on 2018-12-08

1968 LARP1 is a major phosphorylation substrate of mTORC1

Fonseca, B. D.; Jia, J.-J.; Hollensen, A. K.; Pointet, R.; Hoang, H.-D.; Niklaus, M. R.; Pena, I. A.; Lahr, R. M.; Smith, E. M.; Hearnden, J.; Wang, X.-D.; Yang, A.-D.; Celucci, G.; Graber, T. E.; Dajadian, C.; Yu, Y.; Damgaard, C. K.; Berman, A. J.; Alain, T.

10.1101/491274 — biochemistry — Posted on 2018-12-08

1969 Symmetry breaking in the embryonic skin triggers a directional and sequential front of competence during plumage patterning

Bailleul, R.; Desmarquet-Trin Dinh, C.; Hidalgo, M.; Curantz, C.; Touboul, J.; Manceau, M.

10.1101/491092 — developmental biology — Posted on 2018-12-08

1970 Inhibition of Notch signaling rescues cardiovascular development in Kabuki Syndrome

Serrano, M. d. l. A.; Demarest, B. L.; Tone-Pah-Hote, T.; Tristani, M.; Yost, H. J.

10.1101/489757 — developmental biology — Posted on 2018-12-08

1971 Deregulation of VEGFR-2 and PGFR expression and microvascular density in a triple-negative model of canine malignant mammary tumors with lymph node or lung metastasis

dos Anjos, D. S.; Vital, A. F.; Lainetti, P. D. F.; Leis-Filho, A. F.; Dalmolin, F.; Elias, F.; Calazans, S. G.; Fonseca-Alves, C. E.

10.1101/490144 — cancer biology — Posted on 2018-12-08

1972 Developing and Evaluating Mappings of ICD-10 and ICD-10-CM codes to Phecodes

Wu, P.; Gifford, A.; Meng, X.; Li, X.; Campbell, H.; Varley, T.; Zhao, J.; Carroll, R.; Bastarache, L.; Denny, J. C.; Theodoratou, E.; Wei, W.-Q.

10.1101/462077 — bioinformatics — Posted on 2018-12-08

1973 Multi-study inference of regulatory networks for more accurate models of gene regulation

Castro, D. M.; de Veaux, N.; Miraldi, E. R.; Bonneau, R.

10.1101/279224 — systems biology — Posted on 2018-12-08

1974 The Allen Cell Structure Segmenter: a new open sourcetoolkit for segmenting 3D intracellular structures influorescence microscopy images

Chen, J.; Ding, L.; Viana, M. P.; Hendershott, M. C.; Yang, R.; Mueller, I. A.; Rafelski, S. M.

10.1101/491035 — cell biology — Posted on 2018-12-08

1975 Genome-wide recombination map construction from single individuals using linked-read sequencing

Dreau, A.; Venu, V.; Gaspar, L.; Jones, F. C.

10.1101/489989 — genomics — Posted on 2018-12-08

1976 Salmonid gene expression biomarkers indicative of physiological responses to changes in salinity, temperature, but not dissolved oxygen

Houde, A. L. S.; Akbarzadeh, A.; Günther, O. P.; Li, S.; Patterson, D. A.; Farrell, A. P.; Hinch, S. G.; Miller, K. M.

10.1101/491001 — genomics — Posted on 2018-12-08

1977 The genomic and proteomic landscape of the rumen microbiome revealed by comprehensive genome-resolved metagenomics

Stewart, R. D.; Auffret, M. D.; Warr, A.; Walker, A. W.; Roehe, R.; Watson, M.

10.1101/489443 — microbiology — Posted on 2018-12-08

1978 Miniaturization technologies for cost effective AmpliSeq library preparation for next generation sequencing

Ogiso-Tanaka, E.; Kaga, A.; Hajika, M.

10.1101/467464 — genomics — Posted on 2018-12-08

1979 Why Put-Up with Immunity when there is Resistance: An Excursion into the Population and Evolutionary Dynamics of Restriction-Modification and CRISPR-Cas

Gurney, J. R.; Pleska, M.; Levin, B. R.

10.1101/487132 — evolutionary biology — Posted on 2018-12-08

1980 Tumor Protein D54 is a promiscuous Rab effector

Larocque, G.; La-Borde, P. J.; Clarke, N. I.; Royle, S. J.

10.1101/481754 — cell biology — Posted on 2018-12-08

1981 Metabolically-Driven Maturation of hiPSC-Cell Derived Heart-on-a-Chip

10.1101/485169 — bioengineering — Posted on 2018-12-08

1982 Diversity of GABAergic interneurons and diversification of communication modules in cortical networks

Huang, Z. J.; Paul, A.

10.1101/490797 — neuroscience — Posted on 2018-12-08

1983 Multi-OMIC analysis of brain and serum from chronically-stressed mice reveals network disruptions in purine metabolism, fatty acid beta-oxidation, and antioxidant activity that are reversed by antidepressant treatment

Hamilton, P. J.; Chen, E. Y.; Tolstikov, V.; Pena, C. J.; Shah, P.; Panagopoulos, K.; Strat, A. N.; Walker, D. M.; Lorsch, Z. S.; Mervosh, N. L.; Kiraly, D. D.; Sarangarajan, R.; Narain, N. R.; Kiebish, M. A.; Nestler, E. J.

10.1101/490748 — neuroscience — Posted on 2018-12-08

1984 Face-selective units in human ventral temporal cortex reactivate during free recall

Khuvis, S.; Yeagle, E. M.; Norman, Y.; Grossman, S.; Malach, R.; Mehta, A. D.

10.1101/487686 — neuroscience — Posted on 2018-12-08

1985 ExtendAlign: a computational algorithm for delivering multiple, local end-to-end alignments

Flores-Torres, M.; Gomez-Romero, L.; Hasse-Hernandez, J. I.; Aguilar-Ordonez, I.; Tovar, H.; Avendano-Vazquez, S. E.; Flores-Jasso, C. F.

10.1101/475707 — bioinformatics — Posted on 2018-12-08

1986 Talent Identification at the limits of Peer Review: an analysis of the EMBO Postdoctoral Fellowships Selection Process

Klaus, B.; del Alamo, D.

10.1101/481655 — scientific communication and education — Posted on 2018-12-08

1987 New graph-theoretical-multimodal approach using temporal and structural correlations reveal disruption in the thalamo-cortical network in patients with schizophrenia

Finotteli, P.; Forlim, C. G.; Dulio, P.; Klock, L.; Pini, A.; Baechle, J.; Giemsa, P.; Fuchs, M.; Schoofs, N.; Montag, C.; Stoll, L.; Gallinat, J.; Kuehn, S.

10.1101/489997 — neuroscience — Posted on 2018-12-08

1988 Spatial memory formation requires netrin-1 expression by neurons in the adult mammalian brain.

Wong, E.; Glasgow, S. D.; Trigiani, L. J.; Chitsaz, D.; Rymar, V.; Sadikot, A.; Ruthazer, E. S.; Hamel, E.; Kennedy, T. E.

10.1101/490680 — neuroscience — Posted on 2018-12-08

1989 Topoisomerase IIβ targets DNA crossovers formed between distant homologous sites to modulate chromatin structure and gene expression

Miyaji, M.; Furuta, R.; Hosoya, O.; Sano, K.; Hara, N.; Kuwano, R.; Kang, J.; Tateno, M.; Tsutsui, K. M.; Tsutsui, K.

10.1101/484956 — molecular biology — Posted on 2018-12-08

1990 Maternal immune activation causes age-specific changes in cytokine receptor expression in offspring throughout development

Estes, M. L.; Elmer, B. M.; Carter, C. C.; McAllister, A. K.

10.1101/490466 — neuroscience — Posted on 2018-12-08

1991 Architecture of functional lateralisation in the human brain

Karolis, V.; Corbetta, M.; Thiebaut de Schotten, M.

10.1101/372300 — neuroscience — Posted on 2018-12-08

1992 Encoding of the Intent to Drink Alcohol by the Prefrontal Cortex is blunted in Rats with a Family History of Excessive Drinking

Linsenbardt, D. N.; Timme, N. M.; Lapish, C. C.

10.1101/490664 — neuroscience — Posted on 2018-12-08

1993 Regional connectivity, local environmental conditions, and biotic interactions jointly structure a temperate seagrass epifaunal metacommunity

Stark, K. A.; Thompson, P. L.; Yakimishyn, J.; Lee, L.; O'Connor, M. I.

10.1101/482406 — ecology — Posted on 2018-12-08

1994 Leveraging collective regulatory effects of long-range DNA methylations to predict gene expressions and estimate their effects on phenotypes in cancer

Kim, S.; Park, H. J.; Cui, X.; Zhi, D.

10.1101/472589 — bioinformatics — Posted on 2018-12-08

1995 Genotyping-by-sequencing and microarrays are complementary for detecting quantitative trait loci by tagging different haplotypes in association studies

Negro, S. S.; Millet, E.; Madur, D.; Bauland, C.; Combes, V.; Welcker, C.; Tardieu, F.; Charcosset, A.; Nicolas, S. D.

10.1101/476598 — genomics — Posted on 2018-12-08

1996 7-Transmembrane Helical (7TMH) Proteins: Pseudo-Symmetry and Conformational Plasticity

Youkharibache, P.; Tran, A.; Abrol, R.

10.1101/465302 — bioinformatics — Posted on 2018-12-08

1997 Spontaneous mentalizing after early interpersonal trauma: Evidence for hypoactivation of the temporoparietal junction

Hudson, A.; Van Hamme, C.; Maeyens, L.; Brass, M.; Mueller, S.

10.1101/487363 — neuroscience — Posted on 2018-12-08

1998 Genetic variation within genes associated with mitochondrial function is significantly associated with later age at onset of Parkinson disease and contributes to disease risk

Billingsley, K.; Barbosa, I. A.; Bandres-Ciga, S.; Quinn, J. P.; Bubb, V. J.; Deshpande, C.; Botia, J. A.; Reynolds, R. H.; Zhang, D.; Simpson, M. A.; Blauwendraat, C.; Gan-or, Z.; Gibbs, J. R.; Nalls, M. A.; Singleton, A. B.; International Parkinsons Disease Genomics Consortium IPDGC, ; Ryten, M.; Koks, S.

10.1101/475111 — genetics — Posted on 2018-12-08

1999 Meiosis-specific prophase-like pathway controls cleavage-independent release of cohesin by Wapl phosphorylation

Challa, K.; Fajish, G.; Shinohara, M.; Klein, F.; Gasser, S. M.; Shinohara, A.

10.1101/250589 — cell biology — Posted on 2018-12-08

2000 De novo aging-related meganeurites: alteration of NADPH diaphorase positivity in the sacral spinal cord of the aged dog

Li, Y.; Jia, Y.; Huo, W.; Wei, Z.; Wen, X.; Tian, Y.; Zhang, W.; Lu, B.; Guo, A.; Du, G.; Tan, H.

10.1101/483990 — neuroscience — Posted on 2018-12-08

2001 Reduced Resting-State Connectivity in the Precuneus is correlated with Apathy in Patients with Schizophrenia

Forlim, C. G.; Klock, L.; Baechle, J.; Stoll, L.; Giemsa, P.; Fuchs, M.; Schoofs, N.; Montag, C.; Gallinat, J.; Kuehn, S.

10.1101/489161 — neuroscience — Posted on 2018-12-08

2002 Parsing heterogeneity in autism spectrum disorder and attention-deficit/hyperactivity disorder with individual connectome mapping

Dajani, D. R.; Burrows, C. A.; Nebel, M. B.; Mostofsky, S. H.; Gates, K. M.; Uddin, L. Q.

10.1101/490672 — neuroscience — Posted on 2018-12-08

2003 Asynchronous non-invasive high-speed BCI speller with robust non-control state detection

Nagel, S.; Spüler, M.

10.1101/489013 — neuroscience — Posted on 2018-12-08

2004 Reactive/proactive aggression specific cortical and subcortical alterations in children and adolescents with disruptive behavior

Naaijen, J.; Mulder, L. M.; Ilbegi, S.; de Bruijn, S.; Kleine-Deters, R.; Dietrich, A.; Hoekstra, P. J.; Marsman, J.-B.; Aggensteiner, P. M.; Holz, N. E.; Boettinger, B.; Baumeister, S.; Banaschewski, T.; Saam, M. C.; Schulze, U. M.; Santosh, P. J.; Sagar-Ouriaghli, I.; Mastroianni, M.; Castro Fornieles, J.; Bargallo, N.; Rosa, M.; Arango, C.; Penzol, M. J.; Werhahn, J. E.; Walitza, S.; Brandeis, D.; Glennon, J. C.; Franke, B.; Zwiers, M. P.; Buitelaar, J. K.

10.1101/490086 — neuroscience — Posted on 2018-12-08

2005 Retinoid X receptor alpha is a spatiotemporally-specific therapeutic target for doxorubicin-induced cardiomyopathy in adult zebrafish

Ma, X.; Ding, Y.; Zhang, H.; Qiu, Q.; Dvornikov, A.; Kim, M.; Wang, Y.; Lowerison, M.; Herrmann, J.; Ekker, S.; Hsiai, T.; Lin, X.; Xu, X.

10.1101/490706 — genetics — Posted on 2018-12-08

2006 Wolbachia, Cardinium and climate: an analysis of global data

Charlesworth, J.; Weinert, L. A.; Araujo-Jnr., E. V.; Welch, J. J.

10.1101/490284 — ecology — Posted on 2018-12-08

2007 Who is researching biodiversity hotspots in Eastern Europe? A case study on grasslands from Romania

Nita, A.; Hartel, T.; Manolache, S.; Ciocanea, C.-M. M.; Miu, I. V.; Rozylowicz, L.

10.1101/487397 — scientific communication and education — Posted on 2018-12-08

2008 Domain topology, stability, and translation speed determine mechanical force generation on the ribosome

Leininger, S. E.; Trovato, F.; Nissley, D. A.; O'Brien, E. P.

10.1101/490821 — biophysics — Posted on 2018-12-07

2009 Nonlinear functional responses and ecological pleiotropy alter the strength and likelihood of disruptive selection in consumers

Coblentz, K. E.

10.1101/283911 — evolutionary biology — Posted on 2018-12-07

2010 Integrated use of LC/MS/MS and LC/Q-TOF/MS targeted metabolomics with automated label-free microscopy for quantification of purine metabolites in cultured mammalian cells

Nybo, S. E.; Lamberts, J. T.

10.1101/490300 — neuroscience — Posted on 2018-12-07

2011 Nanopore sequencing significantly improves genome assembly of the eukaryotic protozoan parasite Trypanosoma cruzi

Diaz-Viraque, F.; Pita, S.; Greif, G.; Moreira de Souza, R. d. C.; Iraola, G.; Robello, C.

10.1101/489534 — genomics — Posted on 2018-12-07

2012 Metagenome-wide measurement of protein synthesis in the human fecal microbiota using MetaRibo-Seq

Fremin, B. J.; Bhatt, A. S.

10.1101/482430 — microbiology — Posted on 2018-12-07

2013 Pseudozyma saprotrophic yeasts have retained a large effector arsenal, including functional Pep1 orthologs

Sharma, R.; Oekmen, B.; Doehlemann, G.; Thines, M.

10.1101/489690 — evolutionary biology — Posted on 2018-12-07

2014 Fast and accurate large multiple sequence alignments using root-to-leave regressive computation

Garriga Nogales, E.; Di Tommaso, P.; Magis, C.; Erb, I.; Laayouni, H.; Kondrashov, F.; Floden, E.; Notredame, C.

10.1101/490235 — bioinformatics — Posted on 2018-12-07

2015 Signaling incentive and drive in the primate ventral pallidum for motivational control of goal-directed action

Fujimoto, A.; Hori, Y.; Nagai, Y.; Kikuchi, E.; Oyama, K.; Suhara, T.; Minamimoto, T.

10.1101/420851 — neuroscience — Posted on 2018-12-07

2016 Improved sleep scoring in mice reveals human-like stages.

Lacroix, M. M.; de Lavilleon, G.; Lefort, J.; El Kanbi, K.; Bagur, S.; Laventure, S.; Dauvilliers, Y.; Peyron, C.; Benchenane, K.

10.1101/489005 — neuroscience — Posted on 2018-12-07

2017 Novel allosteric mechanism of p53 activation by small molecules for targeted anticancer therapy

Zawacka-Pankau, J.; Grinkevich, V. V.; Burmakin, M.; Vema, A.; Fawkner, K.; Issaeva, N.; Andreotti, V.; Dickinson, E. R.; Hedstrom, E.; Spinnler, C.; Inga, A.; Larsson, L.-G.; Karlen, A.; Tarasova, O.; Poroikov, V.; Lavrenov, S.; Preobrazhenskaya, M.; Barran, P. E.; Okorokov, A. L.; Selivanova, G.

10.1101/384248 — cancer biology — Posted on 2018-12-07

2018 BRK Phosphorylates SMAD4 for proteasomal degradation and inhibits tumor suppressor FRK to control SNAIL, SLUG and metastatic potential.

Miah, S.; Banks, C.; Ogunbolude, Y.; Bagu, E.; MacAusland-Berg, J.; Saraf, A.; Hattem, G.; Kempf, C.; Sardiu, M.; Napper, S.; Florens, L.; Lukong, K. E.; Washburn, M. P.

10.1101/458190 — cancer biology — Posted on 2018-12-07

2019 Genetics behind the biosynthesis of nonulosonic acid containing lipooligosaccharides in Campylobacter coli

Kolehmainen, A.; Rossi, M.; Stupak, J.; Li, J.; Gilbert, M.; Wakarchuk, W. W.

10.1101/254235 — microbiology — Posted on 2018-12-07

2020 Conflicting signals of adaptive molecular evolution - Where does the neutral theory stand after 50 years?

He, Z.; Chen, Q.; Yang, H.; Chen, Q.; Shi, S.; Wu, C.-I.

10.1101/417717 — evolutionary biology — Posted on 2018-12-07

2021 Discovery of Alstrom syndrome gene as a regulator of centrosome duplication in asymmetrically dividing stem cells in Drosophila.

Chen, C.; Yamashita, Y.

10.1101/490615 — developmental biology — Posted on 2018-12-07

2022 Dietary protein mediates terminal investment in egg quantity or quality following bacterial gut infection in Drosophila

Hudson, A. L.; Moatt, J. P.; Vale, P. F.

10.1101/489625 — evolutionary biology — Posted on 2018-12-07

2023 Recommendations to address uncertainties in environmental risk assessment using toxicokinetics-toxicodynamics models

Baudrot, V.; Charles, S.

10.1101/356469 — ecology — Posted on 2018-12-07

2024 Alignment-Free Approaches for Predicting Novel Nuclear Mitochondrial Segments (NUMTs) in the Human Genome

Li, W.; Freudenberg, J.; Freudenberg, J.

10.1101/239053 — bioinformatics — Posted on 2018-12-07

2025 Evidence for enhanced neural tracking of the speech envelope underlying age-related speech-in-noise difficulties

Decruy, L.; Vanthornhout, J.; Francart, T.

10.1101/489237 — neuroscience — Posted on 2018-12-07

2026 The ligand-mediated affinity of escort proteins determines the directionality of lipophilic cargo transport

Cheng, Y.-Y.; Huang, Y.-F.; Lin, H.-H.; Chang, W.-S. W.; Lyu, P.-C.

10.1101/415984 — biophysics — Posted on 2018-12-07

2027 The Biological Basis of the Experience of Constant Colour Categories

Zeki, S.; Javier, A.; Mylonas, D.

10.1101/488379 — neuroscience — Posted on 2018-12-07

2028 Dynamics Of Cardiomyocyte Transcriptome And Chromatin Landscape Demarcates Key Events Of Heart Development

Pawlak, M.; Kedzierska, K. Z.; Migdal, M.; Abu Nahia, K.; Ramilowski, J. A.; Bugajski, L.; Hashimoto, K.; Marconi, A.; Piwocka, K.; Carninci, P.; Winata, C. L.

10.1101/488593 — genomics — Posted on 2018-12-07

2029 A high-quality grapevine downy mildew genome assembly reveals rapidly evolving and lineage-specific putative host adaptation genes

Dussert, Y.; Mazet, I. D.; Couture, C.; Gouzy, J.; Piron, M.-C.; Kuchly, C.; Bouchez, O.; Rispe, C.; Mestre, P.; Delmotte, F.

10.1101/350041 — genomics — Posted on 2018-12-07

2030 Towards building an automated bioinformatician: more accurate transcript assembly via parameter advising

DeBlasio, D.; Kim, K.; Kingsford, C.

10.1101/342865 — bioinformatics — Posted on 2018-12-07

2031 Influence of Preservation Methods, Sample Medium and Sampling Time on eDNA Recovery in a Neotropical River

Sales, N. G.; Wangensteen, O. S.; Carvalho, D. C.; Mariani, S.

10.1101/489609 — molecular biology — Posted on 2018-12-07

2032 Six percent loss of genetic variation in wild populations since the industrial revolution

Leigh, D. M.; Hendry, A.; Vazquez-Dominguez, E.; Friesen, V.

10.1101/488650 — genetics — Posted on 2018-12-07

2033 Bayesian decision theoretic design of two-founder experimental crosses given diallel data

Keele, G. R.; Maurizio, P. L.; Oreper, D.; Valdar, W.

10.1101/489682 — genetics — Posted on 2018-12-07

2034 Identification of N-linked glycans as specific mediators of neuronal uptake of acetylated α-Synuclein

Birol, M.; Wojcik, S. P.; Miranker, A. D.; Rhoades, E.

10.1101/407247 — biophysics — Posted on 2018-12-07

2035 Clustering based approach for population level identification of condition-associated T-cell receptor β-chain CDR3 sequences

Yohannes, D. A.; Kaukinen, K.; Kurppa, K.; Saavalainen, P.; Greco, D.

10.1101/490102 — bioinformatics — Posted on 2018-12-07

2036 In Vivo Flow Cytometry of Extremely Rare Circulating Cells

Tan, X.; Patil, R.; Bartosik, P.; Runnels, J.; Lin, C. P.; Niedre, M.

10.1101/488619 — bioengineering — Posted on 2018-12-07

2037 Cellular multifunctionality in the muscle activity of Hydra vulgaris

Szymanski, J. R.; Yuste, R.

10.1101/489930 — physiology — Posted on 2018-12-07

2038 Computational exploration of molecular receptive fields in the olfactory bulb reveals a glomerulus-centric chemical map.

Soelter, J.; Schumacher, J.; Spors, H.; Schmuker, M.

10.1101/489666 — neuroscience — Posted on 2018-12-07

2039 Exercise restores chloride homeostasis and decreases spasticity through the BDNF-KCC2 pathway after chronic SCI

Schulze, H.; Choyke, S.; Klaszky, M.; Cote, M.-P.

10.1101/489740 — neuroscience — Posted on 2018-12-07

2040 Profiles of cooperative brains: A discriminant analysis of cleaner and client fish monoaminergic responses to different social contexts

Maximino, C.; Gomes, A. C.; Sander de Abreu, M.; Cardoso, S.; Lima-Maximino, M. G.; Winberg, S.; Soares, M.

10.1101/326843 — neuroscience — Posted on 2018-12-07

2041 Surrogate R-spondin agonists for tissue-specific potentiation of Wnt signaling

Luca, V. C.; Miao, Y.; Li, X.; Hollander, M. J.; Kuo, C. J.; Garcia, K. C.

10.1101/487223 — molecular biology — Posted on 2018-12-07

2042 The Elongator Complex is Required to Maintain Locomotor Healthspan in Caenorhabditis elegans

Kawamura, K.; Maruyama, I. N.

10.1101/487876 — genetics — Posted on 2018-12-07

2043 MitoZ: A toolkit for mitochondrial genome assembly, annotation and visualization

Meng, G.; Li, Y.; Yang, C.; Liu, S.

10.1101/489955 — bioinformatics — Posted on 2018-12-07

2044 Scale invariance of BMP signaling gradients in zebrafish

Huang, Y.; Umulis, D.

10.1101/489872 — systems biology — Posted on 2018-12-07

2045 Counter-stimuli Inhibit GRPR Neurons via GABAergic Signaling in the Spinal Cord

Bardoni, R.; Barry, D. M.; Li, H.; Shen, K.-F.; Jeffry, J.; Yang, Q.; Comitato, A.; Li, Y.-Q.; Chen, Z.-F.

10.1101/489831 — neuroscience — Posted on 2018-12-07

2046 Plant species and soil type influence rhizosphere bacterial composition and seedling establishment on serpentine soils

Igwe, A.; Vannette, R. L.

10.1101/489344 — microbiology — Posted on 2018-12-07

2047 Models of archaic admixture and recent history from two-locus statistics

Ragsdale, A. P.; Gravel, S.

10.1101/489401 — genetics — Posted on 2018-12-07

2048 Identification of a novel Nucleobase-Ascorbate Transporter family member in fish and amphibians

Oliveira, D.; Machado, A.; Cardoso, T.; Lopes-Marques, M.; Castro, L. F.; Ruivo, R.

10.1101/287870 — evolutionary biology — Posted on 2018-12-07

2049 Uncovering missed indels by leveraging unmapped reads

Hasan, M. S.; Wu, X.; Zhang, L.

10.1101/488601 — bioinformatics — Posted on 2018-12-07

2050 PhyloSuite: an integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies

Zhang, D.; Gao, F.; Li, W. X.; Jakovlic, I.; Zou, H.; Zhang, J.; Wang, G. T.

10.1101/489088 — bioinformatics — Posted on 2018-12-07

2051 Introduction to Genomic Analysis Workshop: A catalyst for engaging life-science researchers in high throughput analysis

Richmond, P. A.; Wasserman, W. W.

10.1101/478024 — scientific communication and education — Posted on 2018-12-07

2052 Polarized light information modulates sensorimotor decision making in goldfish

Otero Coronel, S. J.; Beron de Astrada, M.; Medan, V.

10.1101/488544 — neuroscience — Posted on 2018-12-07

2053 Genome-wide screening reveals a novel class of carbonic anhydrase-like inorganic carbon transporters in chemoautotrophic bacteria

Desmarais, J. J.; Flamholz, A. I.; Blikstad, C.; Dugan, E. J.; Laughlin, T. G.; Oltrogge, L. M.; Chen, A. W.; Wetmore, K.; Diamond, S.; Wang, J. Y.; Savage, D. F.

10.1101/476713 — molecular biology — Posted on 2018-12-07

2054 Deciphering Latent Growth-States from Cellular Lineage Trees

Nakashima, S.; Sughiyama, Y.; Kobayashi, T. J.

10.1101/488981 — evolutionary biology — Posted on 2018-12-07

2055 Metacommunity-scale biodiversity regulation and the self-organized emergence of macroecological patterns

Dinner O'Sullivan, J. L.; Knell, R. J.; Rossberg, A. G.

10.1101/489336 — ecology — Posted on 2018-12-07

2056 Analysis of the 4q35 chromatin organization reveals distinct long-range interactions in patients affected with Facio-Scapulo-Humeral Dystrophy.

Gaillard, M.-C.; Broucqsault, N.; Morere, J.; Laberthonniere, C.; Dion, C.; Badja, C.; Roche, S.; Nguyen, K.; Magdinier, F.; Robin, J.

10.1101/462325 — cell biology — Posted on 2018-12-07

2057 Development of a large-scale computer-controlled ozone inhalation exposure system for rodents

Smith, G. J.; Walsh, L.; Higuchi, M.; Kelada, S.

10.1101/489518 — pharmacology and toxicology — Posted on 2018-12-07

2058 Global increase in circRNA levels in myotonic dystrophy

Czubak, K.; Taylor, K.; Piasecka, A.; Sobczak, K.; Kozlowska, K.; Philips, A.; Sedehizadeh, S.; Brook, J. D.; Wojciechowska, M.; Kozlowski, P.

10.1101/489070 — molecular biology — Posted on 2018-12-07

2059 Suicidal Red Queen: Population dynamics and genetic drift accelerate diversity loss

Schenk, H.; Schulenburg, H.; Traulsen, A.

10.1101/490201 — evolutionary biology — Posted on 2018-12-07

2060 Extensive genetic divergence between recently evolved sympatric Arctic charr morphs

Guđbrandsson, J.; Kapralova, K. H.; Franzdottir, S. R.; Bergsveinsdottir, T. M.; Hafstađ, V.; Jonsson, Z. O.; Snorrason, S. S.; Palsson, A.

10.1101/489104 — evolutionary biology — Posted on 2018-12-07

2061 Statistical power of gene-set enrichment analysis is a function of gene set correlation structure

Swanson, D.

10.1101/186288 — bioinformatics — Posted on 2018-12-07

2062 Restoring ventilatory control using an adaptive bioelectronic system

Siu, R.; Abbas, J. J.; Hillen, B. K.; Gomes, J.; Coxe, S.; Castelli, J.; Renaud, S.; Jung, R.

10.1101/488577 — physiology — Posted on 2018-12-07

2063 A reevaluation of the electrophysiological correlates of absolute pitch and relative pitch: No evidence for an absolute pitch-specific negativity.

Leipold, S.; Oderbolz, C.; Greber, M.; Jaencke, L.

10.1101/489302 — neuroscience — Posted on 2018-12-07

2064 Sound source localization with varying amount of visual information in virtual reality

Ahrens, A.; Lund, K. D.; Marschall, M.; Dau, T.

10.1101/489484 — neuroscience — Posted on 2018-12-07

2065 Human Norovirus Neutralized by a Monoclonal Antibody Targeting the HBGA Pocket

Koromyslova, A. D.; Morozov, V.; Hefele, L.; Hansman, G.

10.1101/489906 — molecular biology — Posted on 2018-12-07

2066 Mutations In PIK3C2A Cause Syndromic Short Stature, Skeletal Abnormalities, and Cataracts Associated With Ciliary Dysfunction

Tiosano, D.; Baris Feldman, H.; Chen, A.; Hitzert, M. M.; Schueler, M.; Gulluni, F.; Wiesener, A.; Bergua, A.; Mory, A.; Copeland, B.; Gleeson, J. G.; Rump, P.; van Meer, H.; Sival, D. A.; Haucke, V.; Kriwinsky, J.; Knaup, K. X.; Reis, A.; Hauer, N. N.; Hirsch, E.; Roepman, R.; Pfundt, R.; Thiel, C. T.; Wiesener, M. S.; Aslanyan, M. G.; Buchner, D. A.

10.1101/488411 — genetics — Posted on 2018-12-07

2067 Molecular convergence and positive selection associated with the evolution of symbiont transmission mode in stony corals

Dixon, G. B.; Kenkel, C. D.

10.1101/489492 — evolutionary biology — Posted on 2018-12-07

2068 HeartBioPortal: an internet-of-omics for human cardiovascular disease data

Khomtchouk, B.; Vand, K. A.; Koehler, W. C.; Tran, D.-T.; Middlebrook, K.; Sudhakaran, S.; Gozani, O.; Assimes, T.

10.1101/487744 — bioinformatics — Posted on 2018-12-07

2069 Causal influences of brain metabolic activity reveal interregional progressions in normal aging

Di, X.; Wolfer, M.; Amend, M.; Wehrl, H.; Ionescu, T. M.; Pichler, B. J.; Biswal, B. B.; Alzheimer Disease Neuroimaging Initiative,

10.1101/490292 — neuroscience — Posted on 2018-12-07

2070 Dissociations between microstructural and functional hierarchies within regions of transmodal cortex

Paquola, C.; Vos de Wael, R.; Wagstyl, K.; Bethlehem, R.; Seidlitz, J.; Hong, S.-J.; Bullmore, E.; Evans, A.; Misic, B.; Margulies, D.; Smallwood, J.; Bernhardt, B.

10.1101/488700 — neuroscience — Posted on 2018-12-07

2071 A novel humanized mouse model to study antigen-specific cutaneous T cell responses in vivo

Klicznik, M. M.; Benedetti, A.; Gail, L. M.; Holly, R.; Laimer, M.; Stoecklinger, A.; Sir, A.; Reitsamer, R.; Rosenblum, M. D.; Murauer, E.; Gratz, I. K.

10.1101/490060 — immunology — Posted on 2018-12-07

2072 The consensus molecular classification of muscle-invasive bladder cancer

Kamoun, A.; de Reynies, A.; Allory, Y.; Sjodahl, G.; Robertson, A. G.; Seiler, R.; Hoadley, K.; Al-Ahmadie, H.; Choi, W.; Groeneveld, C. S.; Castro, M. A. A.; Fontugne, J.; Eriksson, P.; Mo, Q.; Zlotta, A.; Hartmann, A.; Dinney, C. P.; Bellmunt, J.; Powles, T.; Malats, N.; Chan, K. S.; Kim, W. Y.; McConkey, D. J.; Black, P. C.; Dyrskjot, L.; Hoglund, M.; Lerner, S. P.; Real, F. X.; Radvanyi, F.; The Bladder Cancer Molecular Taxonomy Group,

10.1101/488460 — cancer biology — Posted on 2018-12-07

2073 Accelerating structure-function mapping using the ViVa webtool to mine natural variation

Hamm, M. O.; Moss, B. L.; Leydon, A. R.; Gala, H. P.; Lanctot, A.; Ramos, R.; Klaeser, H.; Lemmex, A. C.; Zahler, M. L.; Nemhauser, J. L.; Wright, R. C.

10.1101/488395 — bioinformatics — Posted on 2018-12-07

2074 Anacapa Toolkit: an environmental DNA toolkit for processing multilocus metabarcode datasets

Curd, E. E.; Gold, Z.; Kandlikar, G.; Gomer, J.; Ogden, M.; O'Connell, T.; Pipes, L.; Schweizer, T.; Rabichow, L.; Lin, M.; Shi, B.; Barber, P.; Kraft, N.; Wayne, R.; Meyer, R. S.

10.1101/488627 — bioinformatics — Posted on 2018-12-07

2075 PGC1a and Exercise Adaptations in Zebrafish

Parisi, A.; Blattmann, P.; Lizzo, G.; Stutz, V.; Strohm, L.; Richard, J.; Civiletto, G.; Charpagne, A.; Raymond, F.; Gobet, C.; Weger, B.; Migliavacca, E.; Aebersold, R.; Spiegelman, B.; Gut, P.

10.1101/483784 — physiology — Posted on 2018-12-07

2076 Accelerated Bayesian inference of gene expression models from snapshots of single-cell transcripts

Lin, Y. T.; Buchler, N. E.

10.1101/489880 — molecular biology — Posted on 2018-12-07

2077 Glycolipid composition of the heterocyst envelope of Anabaena sp. PCC 7120 is crucial for diazotrophic growth and relies on the UDP-galactose 4-epimerase HgdA

Shvarev, D.; Nishi, C. N.; Maldener, I.

10.1101/489914 — microbiology — Posted on 2018-12-07

2078 Resolving the insertion sites of polymorphic duplications reveals a HERC2 haplotype under selection

Saitou, M.; Gokcumen, O.

10.1101/488726 — genomics — Posted on 2018-12-07

2079 Structure and dynamics of the central lipid pool and protein components of the bacterial holo-translocon

Martin, R.; Larsen, A. H.; Corey, R. A.; Midtgaard, S. R.; Frielinghaus, H.; Schaffitzel, C.; Arleth, L.; Collinson, I.

10.1101/490250 — biophysics — Posted on 2018-12-07

2080 Functional connectomics of affective and psychotic pathology

Baker, J. T.; Dillon, D. G.; Patrick, L. M.; Roffman, J. L.; Brady, R. O.; Pizzagalli, D. A.; Ongur, D.; Holmes, A.

10.1101/489377 — neuroscience — Posted on 2018-12-07

2081 Climate gradients explain population-level divergence in drought-induced plasticity of functional traits and gene expression in a South African Protea

Akman, M.; Carlson, J. E.; Latimer, A. M.

10.1101/478230 — evolutionary biology — Posted on 2018-12-07

2082 Interpenetration between a polymer brush and a polymerstar at thermal equilibrium: A theoretical approach

Edwards, M.

10.1101/489559 — biophysics — Posted on 2018-12-07

2083 A quantitative inventory of yeast P body proteins reveals principles of compositional specificity

Xing, W.; Muhlrad, D.; Parker, R.; Rosen, M. K.

10.1101/489658 — biophysics — Posted on 2018-12-07

2084 In vivo microscopy reveals the impact of Pseudomonas aeruginosa social interactions on host colonization

Rezzoagli, C.; Granato, E.; Kuemmerli, R.

10.1101/488262 — microbiology — Posted on 2018-12-07

2085 Cerebrospinal fluid transcriptional analyses reveals upregulation of IL-17, Type 1 interferon transcriptional pathways and neutrophil persistence genes associated with increased mortality from pneumococcal meningitis in adults

Wall, E. C.; Guerra-Assuncao, J. A.; Pollara, G.; Venturini, C.; Mlowzowa, V.; Allain, T.; Lalloo, D.; Noursadeghi, M.; Brown, J. S.; Heyderman, R.

10.1101/490045 — immunology — Posted on 2018-12-07

2086 Automated detection of the HER2 gene amplification status in Fluorescence in situ hybridization images for the diagnostics of cancer tissues

Zakrzewski, F.; de Back, W.; Weigert, M.; Wenke, T.; Zeugner, S.; Mantey, R.; Friedrich, K.; Roeder, I.; Aust, D. E.; Hoenscheid, P.; Baretton, G.

10.1101/490052 — pathology — Posted on 2018-12-07

2087 Chemogenetic ligands for translational neurotheranostics

Bonaventura, J.; Eldridge, M. A.; Hu, F.; Gomez, J. L.; Sanchez-Soto, M.; Abramyan, A. M.; Lam, S.; Boehm, M.; Ruiz, C.; Farrell, M.; Moreno, A.; Galal Faress, I. M.; Andersen, N.; Lin, J. Y.; Moaddel, R.; Morris, P.; Shi, L.; Sibley, D. R.; Mahler, S. V.; Nabavi, S.; Pomper, M. G.; Bonci, A.; Horti, A. G.; Richmond, B. J.; Michaelides, M.

10.1101/487637 — neuroscience — Posted on 2018-12-07

2088 Functional analyses of the horizontally acquired Phytophaga glycoside hydrolase family 45 (GH45) proteins reveal distinct functional characteristics

Busch, A.; Danchin, E. G.; Pauchet, Y.

10.1101/489054 — molecular biology — Posted on 2018-12-07

2089 Codon usage and amino acid identity are major determinants of mRNA stability in humans

Forrest, M. E.; Narula, A.; Sweet, T. J.; Arango, D.; Hanson, G.; Ellis, J.; Oberdoerffer, S.; Coller, J.; Rissland, O. S.

10.1101/488676 — molecular biology — Posted on 2018-12-07

2090 Metabolically-Driven Maturation of hiPSC-Cell Derived Heart-on-a-Chip

10.1101/485169 — bioengineering — Posted on 2018-12-07

2091 A Strategy Study on Risk Communication of Pandemic Influenza ----A Mental Model Study of College Students in Beijing

Yang, H.; Wang, L.; Wang, Y.; Zheng, B.; Du, S.; Lu, X.

10.1101/490532 — scientific communication and education — Posted on 2018-12-07

2092 Projected expansion in climatic suitability for Trypanosoma cruzi, the etiological agent of Chagas Disease, and five widespread Triatoma species by 2070: the role of climate change on infectious diseases

Nichols, M.; Butler, C. J.; Lord, W. D.; Haynie, M. L.

10.1101/490508 — epidemiology — Posted on 2018-12-07

2093 Petrosal morphology and cochlear function in Mesozoic stem therians

Harper, T.; Rougier, G.

10.1101/490367 — paleontology — Posted on 2018-12-07

2094 Subset selection of markers for genome-enabled prediction of genetic val-ues using radial basis function neural networks

Sant' Anna, I. d. C.; Silva, G. N.; Nascimento, M.; Cruz, C. D.

10.1101/490474 — genetics — Posted on 2018-12-07

2095 Effects of daily L-dopa administration on learning and brain structure in older adults undergoing four weeks of cognitive training: a randomised, parallel-group, double-blind, placebo-controlled trial.

Lebedev, A. V.; Nilsson, J.; Lindstrom, J.; Fredborg, W.; Akenine, U.; Hillila, C.; Andersen, P.; Spulber, G.; de Lange, E. C.; van den Berg, D.-J.; Kivipelto, M.; Lovden, M.

10.1101/482679 — clinical trials — Posted on 2018-12-07

2096 Molecular mechanism of the Orai channel activation

Liu, X.; Wu, G.; Yu, Y.; Chen, X.; Ji, R.; Lu, J.; Li, X.; Zhang, X.; Yang, X.; SHEN, Y.

10.1101/490516 — biochemistry — Posted on 2018-12-07

2097 Automated image processing to support the analysis of between-year transmission of Leptosphaeria maculans in field conditions

Bousset, L.; Palerme, M.; Leclerc, M.; Parisey, N.

10.1101/488890 — epidemiology — Posted on 2018-12-07

2098 Tick-borne pathogen detection in midgut and salivary glands of adult Ixodes ricinus

Lejal, E.; Moutailler, S.; Simo, L.; Vayssier-Taussat, M.; Pollet, T.

10.1101/489328 — epidemiology — Posted on 2018-12-07

2099 Intake of dietary fiber, fruits, and vegetables, and risk of diverticulitis

Ma, W.; Long, N. H.; Song, M.; Jovani, M.; Liu, P.-H.; Cao, Y.; Tam, I.; Wu, K.; Giovannucci, E. L.; Strate, L. L.; Chan, A. T.

10.1101/487462 — epidemiology — Posted on 2018-12-07

2100 Dextranol: A better lyoprotectant

Jones, B. J.; Mahajan, A.; Aksan, A.

10.1101/490441 — biochemistry — Posted on 2018-12-07

2101 A qualitative exploration of eyecare professional perspectives on Age-Related Macular Degeneration (AMD) care

Jalbert, I.; Rahardjo, D.; Yashadhana, A.; Liew, G.; Gopinath, B.

10.1101/490383 — scientific communication and education — Posted on 2018-12-07

2102 Priming winter wheat seeds with the bacterial quorum sensing signal N-hexanoyl-L-homoserine lactone (C6-HSL) shows potential to improve plant growth and seed yield

Moshynets, O.; Babenko, L. M.; Rogalsky, S. P.; Iungin, O. S.; Foster, J.; Kosakivska, I. V.; Potters, G.; Spiers, A. J.

10.1101/490391 — plant biology — Posted on 2018-12-07

2103 Seeing emotions, reading emotions: behavioral and ERPs evidence of the effect of strategy and of regulation for pictures and words.

Grecucci, A.; Sulpizio, S.; Tommasello, E.; Vespignani, F.; Job, R.

10.1101/490409 — neuroscience — Posted on 2018-12-07

2104 Geographical Distributions and Spatial Equilibrium in Historical Epidemics of the United States

Coleman, S.

10.1101/486506 — epidemiology — Posted on 2018-12-07

2105 Replicative senescense as a consequence of stochastic processes

Fendrik, A. J.; Romanelli, L.; Rotondo, E.

10.1101/490433 — biophysics — Posted on 2018-12-07

2106 Closing Target Trimming: a Perl Package for Discovering Hidden Superfamily Loci in Genomes

Hua, Z.; Early, M. J.

10.1101/490490 — bioinformatics — Posted on 2018-12-07

2107 Comparing the Rat Grimace Scale and a composite behaviour score in rats

Klune, C.; Larkin, A.; Leung, V.; Pang, D. S.

10.1101/490482 — animal behavior and cognition — Posted on 2018-12-07

2108 The role of African buffalo in the epidemiology of foot-and-mouth disease in sympatric cattle and buffalo populations in Kenya

Omondi, G.; Gakuya, F.; Arzt, J.; Sangula, A.; Hartwig, E.; Pauszek, S.; Smoliga, G.; Brito, B.; Perez, A.; Obanda, V.; VanderWaal, K.

10.1101/484808 — epidemiology — Posted on 2018-12-07

2109 Spirometric indices in primary ciliary dyskinesia: systematic review and meta-analysis

Halbeisen, F.; Jose, A.; de Jong, C.; Nyilas, S.; Latzin, P.; Kuehni, C.; Goutaki, M.

10.1101/486837 — epidemiology — Posted on 2018-12-07

2110 The frailty index is a predictor of cause-specific mortality independent of familial effects from midlife onwards

Li, X.; Ploner, A.; Karlsson, I.; Liu, X.; Magnusson, P.; Pedersen, N.; Hägg, S.; Jylhävä, J.

10.1101/486845 — epidemiology — Posted on 2018-12-07

2111 Arterial carboxyhaemoglobin levels in children admitted to PICU: a retrospective observational study

Chawla, A.; Ray, S.; Matettore, A.; Peters, M.

10.1101/490334 — physiology — Posted on 2018-12-07

2112 Response of soil microbial communities to alpine meadow degradation severity levels in the Qinghai-Tibet Plateau

zhang, w.; xue, x.; peng, f.; you, q.; pan, j.; li, c.; lai, c.

10.1101/490375 — microbiology — Posted on 2018-12-07

2113 MinION Nanopore Sequencing of Multiple Displacement Amplified Mycobacteria DNA Direct from Sputum

George, S.; Xu, Y.; Sanderson, N.; Hubbard, A. T.; Griffiths, D. T.; Morgan, M.; Pankhurst, L.; Hoosdally, S. J.; Foster, D.; Thulborn, S.; Robinson, E.; Smith, E. G.; Rathod, P.; Walker, A. S.; Peto, T. E.; Crook, D. W.; Dingle, K. E.

10.1101/490417 — microbiology — Posted on 2018-12-07

2114 Analysis of Epichloë festucae small secreted proteins in the interaction with Lolium perenne

Scott, B.; Hassing, B.; Winter, D.; Mesarich, C.; Eaton, C.; Becker, Y.

10.1101/490425 — genetics — Posted on 2018-12-07

2115 Global dynamics of a general vector-borne disease model with two transmission routes

Nadim, S. S.; Ghosh, I.; Chattopadhyay, J.

10.1101/486720 — epidemiology — Posted on 2018-12-07

2116 Rigorous surveillance is necessary for high confidence in end-of-outbreak declarations for Ebola and other infectious diseases

Thompson, R.; Morgan, O.; Jalava, K.

10.1101/485821 — epidemiology — Posted on 2018-12-07

2117 Identifying and Interpreting Subgroups in Health Care Utilization Data with Count Mixture Regression Models

Kurz, C.; Hatfield, L.

10.1101/488924 — epidemiology — Posted on 2018-12-07

2118 The effect of dietary intervention on inflammatory markers in patients with type 2 diabetes. An analysis of the Lifestyle Over and Above Drugs in Diabetes (LOADD) study

Booker, C. S.; Coppell, K. J.; Duncan, A.; Kataoka, M.; Williams, S. M.; Mann, J. I.

10.1101/483412 — clinical trials — Posted on 2018-12-07

2119 Brain volumes of very low birth weight infants measured by two dimensional cranial ultrasonography, a prospective cohort study

Kadioglu, G.; Canpolat, F. E.; Buyuktiryaki, M.; Kanmaz Kutman, H. G.; Tayman, C.

10.1101/485474 — clinical trials — Posted on 2018-12-07

2120 To: Plos OneKnowledge, experiences and perceptions of the Ghana National Health Insurance Scheme in three districts

Fuseini, S.; Anthony, S.

10.1101/490359 — scientific communication and education — Posted on 2018-12-07

2121 What explains the effect of education on cardiovascular disease? Applying Mendelian randomization to identify the consequences of education inequality

10.1101/488254 — epidemiology — Posted on 2018-12-07

2122 Reactive oxygen species and evaluation of the quality of carcasses and beef meat from cold storage slaughterhouses located in the Federal District and Surroundings (Brazil)

Leite, T. R.; Zago de Sousa, C. M.; Narciso de Souza, P. E.; Veiga de Souza, F. H.; Picao Goncalves, V. S.; Arrais de Alenca, A. L.; Racanicci, A. M. C.; Santana, A. P.

10.1101/490342 — animal behavior and cognition — Posted on 2018-12-07

2123 Targeted genomic integration of EGFP under tubulin beta 3 class III promoter and mEos2 under tryptophan hydroxylase 2 promoter does not produce sufficient levels of reporter gene expression

Menzorov, A. G.; Orishchenko, K.; Fishman, V.; Shevtsova, A.; Mungalov, R.; Pristyazhnyuk, I.; Kizilova, E.; Matveeva, N.; Alenina, N.; Bader, M.; Rubtsov, N.; Serov, O.

10.1101/490243 — developmental biology — Posted on 2018-12-07

2124 Age Grading An. Gambiae and An. Arabiensis Using Near Infrared Spectra and Artificial Neural Networks

Milali, M. P.; Sikulu-Lord, M. T.; Kiware, S. S.; Dowell, F. E.; Corliss, G. F.; Povinelli, R. J.

10.1101/490326 — bioinformatics — Posted on 2018-12-07

2125 Engineering of chimeric polyketide synthases using SYNZIP docking domains

Klaus, M.; D'Souza, A. D.; Nivina, A.; Khosla, C.; Grininger, M.

10.1101/489120 — biochemistry — Posted on 2018-12-07

2126 Bacteria boost mammalian host NAD metabolism by engaging the deamidated biosynthesis pathway

Shats, I.; Liu, J.; Williams, J. G.; Deterding, L. J.; Lim, C.; Lee, E.; Fan, W.; Sokolsky, M.; Kabanov, A. V.; Locasale, J.; Li, X.

10.1101/489674 — biochemistry — Posted on 2018-12-07

2127 Resequencing and association mapping of the generalist pathogen Botrytis cinerea

Atwell, S.; Corwin, J.; Soltis, N.; Zhang, W.; Copeland, D.; Feusier, J.; Eshbaugh, R.; Kliebenstein, D. J.

10.1101/489799 — genomics — Posted on 2018-12-07

2128 CRK2 enhances salt tolerance in Arabidopsis thaliana by regulating endocytosis and callose deposition in connection with PLDα1

Hunter, K.; Kimura, S.; Rokka, A.; Tran, C.; Toyota, M.; Kukkonen, J.; Wrzaczek, M.

10.1101/487009 — plant biology — Posted on 2018-12-07

2129 Parent and offspring genotypes influence gene expression in early life

Newhouse, D.; Barcelo Serra, M.; Tuttle, E.; Gonser, R.; Balakrishnan, C.

10.1101/488684 — genomics — Posted on 2018-12-07

2130 High-resolution structure determination of sub-100 kilodalton complexes using conventional cryo-EM

Herzik, M. A.; Wu, M.; Lander, G. C.

10.1101/489898 — biophysics — Posted on 2018-12-07

2131 Discovery of antimicrobial compounds from Lendenfeldia, Ircinia and Dysidea sponges using bioassay guided fractionation of marine extracts

Dinarvand, M.; Proschogo, N.; Spain, M. P.; Nagalingam, G.; Triccas, J. A.; Rutledge, P. J.

10.1101/489849 — developmental biology — Posted on 2018-12-06

2132 Galaxy-Kubernetes integration: scaling bioinformatics workflows in the cloud

Moreno, P.; Pireddu, L.; Roger, P.; Goonasekera, N.; Afgan, E.; van den Beek, M.; He, S.; Larsson, A.; Ruttkies, C.; Schober, D.; Johnson, D.; Rocca-Serra, P.; Weber, R. J. M.; Gruening, B.; Salek, R.; Kale, N.; Perez-Riverol, Y.; Papatheodorou, I.; Spjuth, O.; Neumann, S.

10.1101/488643 — bioinformatics — Posted on 2018-12-07

2133 Human labor pain is influenced by the voltage-gated potassium channel KV6.4 subunit

Lee, M. C.; Nahorski, M.; Hockley, J. R. F.; Lu, V. B.; Stouffer, K.; Fletcher, E.; Ison, G.; Brown, C.; Wheeler, D.; Ernfors, P.; Menon, D. K.; Reimann, F.; St John Smith, E.; Woods, C. G.

10.1101/489310 — neuroscience — Posted on 2018-12-06

2134 The dormancy-specific regulator, SutA, is intrinsically disordered and modulates transcription initiation in Pseudomonas aeruginosa

Bergkessel, M.; Babin, B. M.; VanderVelde, D. G.; Sweredoski, M. J.; Moradian, A.; Eggleston-Rangel, R.; Hess, S.; Tirrell, D. A.; Artsimovitch, I.; Newman, D. K.

10.1101/423384 — molecular biology — Posted on 2018-12-06

2135 Fission Yeast Cells Grow Approximately Exponentially

Pickering, M.; Hollis, L. N.; D'Souza, E.; Rhind, N.

10.1101/489708 — cell biology — Posted on 2018-12-06

2136 The more you know: Investigating why adults get a bigger memory boost from semantic congruency than children

Wang, W.-C.; Ghetti, S.; Brod, G.; Bunge, S. A.

10.1101/456624 — neuroscience — Posted on 2018-12-06

2137 Decoration of the enterococcal polysaccharide antigen EPA is essential for virulence, cell surface charge and resistance to innate immunity

Smith, R. E.; Salamaga, B.; Szkuta, P.; Hajdamowicz, N. H.; Prajsnar, T. K.; Bulmer, G.; Fontaine, T.; Kołodziejczyk, J.; Herry, J.-M.; Hounslow, A.; Williamson, M. P.; Serror, P.; Mesnage, S.

10.1101/479022 — microbiology — Posted on 2018-12-06

2138 EEG-based detection of the attended speaker and the locus of auditory attention with convolutional neural networks

Deckers, L.; Das, N.; Hossein Ansari, A.; Bertrand, A.; Francart, T.

10.1101/475673 — neuroscience — Posted on 2018-12-06

2139 Simulations reveal insidious challenges to artificial community selection and possible strategies for success

Xie, L.; Yuan, A. E.; Shou, W.

10.1101/264689 — evolutionary biology — Posted on 2018-12-06

2140 Realistic vOlumetric-Approach to Simulate Transcranial Electric Stimulation -- ROAST -- a fully automated open-source pipeline

Huang, Y.; Datta, A.; Bikson, M.; Parra, L. C.

10.1101/217331 — biophysics — Posted on 2018-12-06

2141 Identification of community-consensus clinically relevant variants and development of single molecule molecular inversion probes using the CIViC database

Barnell, E. K.; Waalkes, A.; Penewit, K.; Campbell, K. M.; Skidmore, Z. L.; Pritchard, C. C.; Fehniger, T. A.; Uppaluri, R.; Govindan, R.; Griffith, M.; Salipante, S. J.; Griffith, O. L.

10.1101/479394 — bioinformatics — Posted on 2018-12-06

2142 CCN4 shifts melanoma cells from a fragile proliferative state to a resilient metastatic state

Deng, W.; Fernandez, A.; McLaughlin, S. L.; Klinke, D. J.

10.1101/487751 — cancer biology — Posted on 2018-12-06

2143 Robust candidates for language development and evolution are significantly dysregulated in the blood of people with Williams syndrome

Benitez-Burraco, A.; Kimura, R.

10.1101/488155 — neuroscience — Posted on 2018-12-06

2144 The presence and impact of reference bias on population genomic studies of prehistoric human populations

Günther, T.; Nettelblad, C.

10.1101/487983 — genomics — Posted on 2018-12-06

2145 A Computational Solution To Improve Biomarker Reproducibility During Long-term Projects

Feng, F.; Thompson, M. P.; Thomas, B. E.; Duffy, E. R.; Kim, J.; Kurosawa, S.; Tashjian, J. Y.; Wei, Y.; Andry, C.; Stearns-Kurosawa, D. J.

10.1101/483800 — pathology — Posted on 2018-12-06

2146 Hepatocyte-specific deletion of Pparα promotes NASH in the context of obesity

10.1101/488031 — pathology — Posted on 2018-12-06

2147 Introduction and validation of a new semi-automated method to determine sympathetic fiber density in target tissues.

Bleck, D.; Ma, L.; Byambadoo, L.-E.; Brinks, R.; Schneider, M.; Tian, L.; Pongratz, G.

10.1101/488338 — neuroscience — Posted on 2018-12-06

2148 Dark aerobic sulfide oxidation by anoxygenic phototrophs in the anoxic waters of Lake Cadagno

Berg, J. S.; Pjevac, P.; Sommer, T.; Buckner, C. R. T.; Philippi, M.; Hach, P.; Liebeke, M.; Holtappels, M.; Danza, F.; Tonolla, M.; Sengupta, A.; Schubert, C.; Milucka, J.; Kuypers, M. M. M.

10.1101/487272 — microbiology — Posted on 2018-12-06

2149 Focus on the spectra that matter by clustering of quantification data in shotgun proteomics

The, M.; Käll, L.

10.1101/488015 — systems biology — Posted on 2018-12-06

2150 The (dis)similarities between neural networks based upon functional connectivity, representational similarity, and univariate analyses

Pillet, I.; Op de Beeck, H.; Lee Masson, H.

10.1101/487199 — neuroscience — Posted on 2018-12-06

2151 Characterization of DNA hydroxymethylation in hypothalamus of elderly mice with postoperative cognitive dysfunction

Zhong, J.; Wei, X.

10.1101/488007 — neuroscience — Posted on 2018-12-06

2152 The metastable XBP1u transmembrane domain defines determinants for intramembrane proteolysis by signal peptide peptidase

Yucel, S. S.; Stelzer, W.; Lorenzoni, A.; Wozny, M.; Langosch, D.; Lemberg, M. K.

10.1101/322107 — cell biology — Posted on 2018-12-06

2153 EpiSmokEr: A robust classifier to determine smoking status from DNA methylation data

Bollepalli, S.; Korhonen, T.; Kaprio, J.; Ollikainen, M.; Anders, S.

10.1101/487975 — bioinformatics — Posted on 2018-12-06

2154 Transcriptional Activation of Elephant Shark Mineralocorticoid Receptor by Corticosteroids, Progestins and Spironolactone

Katsu, Y.; Kohno, S.; Oka, K.; Lin, X.; Otake, S.; Pillai, N. E.; Takagi, W.; Hyodo, S.; Venkatesh, B.; Baker, M. E.

10.1101/265348 — evolutionary biology — Posted on 2018-12-06

2155 Destabilizing evolutionary and eco-evolutionary feedbacks drive eco-evo cycles in empirical systems

Cortez, M.; Patel, S.; Schreiber, S.

10.1101/488759 — ecology — Posted on 2018-12-06

2156 The coordination of terminal differentiation and cell cycle exit is mediated through the regulation of chromatin accessibility

Ma, Y.; McKay, D. J.; Buttitta, L.

10.1101/488387 — developmental biology — Posted on 2018-12-06

2157 Formin-2 drives intracellular polymerisation of actin filaments enabling correct segregation of apicoplasts in Plasmodium falciparum and Toxoplasma gondii.

Stortz, J. F.; Singer, M.; Wilkes, J. M.; Meissner, M.; Das, S.

10.1101/488528 — cell biology — Posted on 2018-12-06

2158 Membrane potential regulates the dynamic localisation of mammalian proteasomes

Zhang, Y.; Lippert, A. H.; Lee, J. E.; Carr, A. R.; Ponjavic, A.; Lee, S. F.; Finley, D.; Klenerman, D.; Ye, Y.

10.1101/487702 — cell biology — Posted on 2018-12-06

2159 Podoplanin interaction with caveolin-1 promotes tumour cell migration and invasion

Pedro, L.; Shields, J. D.

10.1101/488304 — cancer biology — Posted on 2018-12-06

2160 S-acylated Golga7b stabilises DHHC5 at the plasma membrane to regulate desmosome assembly and cell adhesion.

Woodley, K. T.; Collins, M. O.

10.1101/481861 — biochemistry — Posted on 2018-12-06

2161 Confidence boosts serial dependence in orientation estimation

Samaha, J.; Switzky, M.; Postle, B. R.

10.1101/369140 — neuroscience — Posted on 2018-12-06

2162 Genetics of adaptation of the ascomycetous fungus Podospora anserina to submerged cultivation

Kudryavtseva, O. A.; Safina, K. R.; Vakhrusheva, O. A.; Logacheva, M. D.; Penin, A. A.; Neretina, T. V.; Moskalenko, V. N.; Glagoleva, E. S.; Bazykin, G. A.; Kondrashov, A. S.

10.1101/488486 — evolutionary biology — Posted on 2018-12-06

2163 Ancestral and offspring nutrition interact to affect life history traits in Drosophila melanogaster

Deas, J. B.; Blondel, L.; Extavour, C. G.

10.1101/488809 — physiology — Posted on 2018-12-06

2164 Assessment of Environmental and Occupational Exposure while Working with Candida auris a Multidrug Resistant (MDR) Fungus in the Animal Facility.

Torres, S. R.; Kim, H. C.; Leach, L.; Chaturvedi, S.; Bennett, C. J.; Hill, D. J.; De Jesus, M.

10.1101/486100 — microbiology — Posted on 2018-12-06

2165 Soil microbial communities in diverse agroecosystems exposed to glyphosate

Kepler, R.; Epp Schmidt, D. J.; Yarwood, S.; Reddy, K. N.; Duke, S. O.; Bradley, C. A.; Williams, M. M.; Buyer, J.; Cavigelli, M. A.; Maul, J. E.

10.1101/484055 — ecology — Posted on 2018-12-06

2166 The Spatio-Temporal Control of Zygotic Genome Activation

Gentsch, G.; Owens, N. D. L.; Smith, J. C.

10.1101/488056 — developmental biology — Posted on 2018-12-06

2167 Retrieving High-Resolution Information from Disordered 2D Crystals by Single Particle Cryo-EM

Righetto, R.; Biyani, N.; Kowal, J.; Chami, M.; Stahlberg, H.

10.1101/488403 — biophysics — Posted on 2018-12-06

2168 Estimation of swine movement network at farm level in the US from the Census of Agriculture data

Moon, S. A. A.; Ferdousi, T.; Self, A.; Scoglio, C.

10.1101/488767 — bioinformatics — Posted on 2018-12-06

2169 An open interface system for non-invasive brain-to-brain free communication between naive human participants

Renton, A. I.; Mattingley, J. B.; Painter, D. R.

10.1101/488825 — bioengineering — Posted on 2018-12-06

2170 Relocating agriculture could drastically reduce humanity’s ecological footprint

Beyer, R. M.; Manica, A.; Rademacher, T. T.

10.1101/488841 — ecology — Posted on 2018-12-06

2171 In Troyer Syndrome Spartin loss induces Complex I impairments and alters pyruvate metabolism

Diquigiovanni, C.; Bergamini, C.; Diaz, R.; Liparulo, I.; Masin, L.; Bianco, F.; Tranchina, A.; Buscherini, F.; Wischmeijer, T. A.; Pippucci, T.; Scarano, E.; Cordelli, D. M.; Fato, R.; Lucocq, J. M.; Seri, M.; Paracchini, S.; Bonora, E.

10.1101/488239 — cell biology — Posted on 2018-12-06

2172 Spo13 prevents premature cohesin cleavage during meiosis

Galander, S.; Barton, R. E.; Kelly, D. A.; Marston, A. L.

10.1101/488312 — cell biology — Posted on 2018-12-06

2173 Novel allosteric mechanism of p53 activation by small molecules for targeted anticancer therapy

10.1101/384248 — cancer biology — Posted on 2018-12-06

2174 Variability in Sensory Sensitivity Predicts Motion Sickness in Virtual Reality

Fulvio, J. M.; Ji, M.; Rokers, B.

10.1101/488817 — neuroscience — Posted on 2018-12-06

2175 Influence of multiple hypothesis testing on reproducibility in neuroimaging research

Puolivali, T.; Palva, S.; Palva, J. M.

10.1101/488353 — neuroscience — Posted on 2018-12-06

2176 Loss of muscle stem cells in aged mice is replenished by muscle-secreted niche factor G-CSF

Li, H.; Chen, Q.; Li, C.; Zhong, R.; Zhao, Y.; Zhu, D.; Zhang, Y.

10.1101/488874 — cell biology — Posted on 2018-12-06

2177 Extracellular Matrix acts as pressure detector in biological tissues

Dolega, M. E.; Brunel, B.; Le Goff, M.; Greda, M.; Verdier, C.; Joanny, J.-F.; Recho, P.; Cappello, G.

10.1101/488635 — biophysics — Posted on 2018-12-06

2178 Insights into impact of DNA copy number alteration and methylation on the proteogenomic landscape of human ovarian cancer via a multi-omics integrative analysis

Song, X.; Ji, J.; Gleason, K. J.; Martignetti, J. A.; Chen, L. S.; Wang, P.

10.1101/488833 — bioinformatics — Posted on 2018-12-06

2179 Poly-Enrich: Count-based Methods for Gene Set Enrichment Testing with Genomic Regions and Updates to ChIP-Enrich

Lee, C. T.; Cavalcante, R. G.; Lee, C.; Qin, T.; Patil, S.; Wang, S.; Tsai, Z. T.; Boyle, A. P.; Sartor, M. A.

10.1101/488734 — bioinformatics — Posted on 2018-12-06

2180 Activation of intracellular transport by relieving KIF1C autoinhibition

Siddiqui, N.; Bachmann, A.; Zwetsloot, A. J.; Hussain, H.; Roth, D.; Kaverina, I.; Straube, A.

10.1101/488049 — cell biology — Posted on 2018-12-06

2181 Somatic uniparental disomy with a rare EFL1 variant causes Shwachman-Diamond syndrome through dysregulating ribosomal protein synthesis

Lee, S.; Shin, C. H.; Hong, C. R.; Kim, J.-D.; Kim, A.-R.; Lee, J.; Kokhan, O.; Yoo, T.; Sohn, Y. B.; Kim, O.-H.; Ko, J. M.; Cho, T.-J.; Wright, N. T.; Jin, S.-W.; Kang, H. J.; Kim, H. H.; Choi, M.

10.1101/483362 — genetics — Posted on 2018-12-06

2182 Long-Term Effects of a Novel Continuous Remote Care Intervention Including Nutritional Ketosis for the Management of Type 2 Diabetes: A 2-year Non-randomized Clinical Trial.

Athinarayanan, S. J.; Adams, R. N.; Hallberg, S. J.; McKenzie, A. L.; Bhanpuri, N. H.; Campbell, W. W.; Volek, J. S.; Phinney, S. D.; McCarter, J. P.

10.1101/476275 — clinical trials — Posted on 2018-12-06

2183 Molecular complexity of the major urinary protein system of the Norway rat, Rattus norvegicus

Gomez-Baena, G.; Armstrong, S. D.; Halstead, J. O.; Prescott, M.; Roberts, S. A.; McLean, L.; Mudge, J. M.; Hurst, J.; Beynon, R.

10.1101/478362 — biochemistry — Posted on 2018-12-06

2184 Culturomics of Aerobic Anoxygenic Phototrophic Bacteria in Wheat Phyllosphere Revealed a Divergent Evolutionary Pattern of Photosynthesis Genes in Methylobacterium spp.

Zervas, A.; Zeng, Y.; Madsen, A. M.; Hansen, L. H.

10.1101/488148 — microbiology — Posted on 2018-12-06

2185 Dye-free retinal angiography using blood-oxygenation modulation

MacKenzie, L. E.; Choudhary, T. R.; Fernandez Ramos, J.; Benjamin, N.; Delles, C.; Harvey, A. R.

10.1101/485839 — biophysics — Posted on 2018-12-06

2186 A Bayesian Two-Way Latent Structure Model for Genomic Data Integration Reveals Few Pan-Genomic Cluster Subtypes in a Breast Cancer Cohort

Swanson, D.; Lien, T.; Bergholtz, H.; Sorlie, T.; Frigessi, A.

10.1101/387076 — bioinformatics — Posted on 2018-12-06

2187 Implantable electrical stimulation bioreactor with liquid crystal polymer based electrodes for enhanced bone regeneration at mandibular large defects in rabbit

Kim, C.; Yang, H. J.; Cho, T. H.; Lee, B.; Gwon, T. M.; Shin, S.; Kim, I. S.; Kim, S. J.; Hwang, S. J.

10.1101/402719 — bioengineering — Posted on 2018-12-06

2188 Monitoring Neural Activity During Exposure to Drugs of Abuse With In Vivo Fiber Photometry

Rinker, J. A.; Gioia, D.; Wayman, W.; Hoffman, M.; Passarella, L.; Calipari, E. S.; Mulholland, P. J.; Woodward, J.

10.1101/487546 — neuroscience — Posted on 2018-12-06

2189 Hierarchical recruitment of competition alleviates working memory overload in a fronto-parietal model

Standage, D.; Pare, M.; Blohm, G.

10.1101/181370 — neuroscience — Posted on 2018-12-06

2190 Rapid identification of an Arabidopsis NLR gene conferring susceptibility to Sclerotinia sclerotiorum using time-resolved automated phenotyping

Barbacci, A.; Navaud, O.; Mbengue, M.; Vincent, R.; Barascud, M.; Lacaze, A.; Raffaele, S.

10.1101/488171 — plant biology — Posted on 2018-12-06

2191 Control of stem-cell niche establishment in Arabidopsis flowers by REVOLUTA and the LEAFY-RAX1 module

Denay, G.; Tichtinsky, G.; Le Masson, M.; Chahtane, H.; Huguet, S.; Lopez-Vidriero, I.; Wenzl, C.; Franco-Zorrilla, J.-M.; Simon, R.; Lohmann, J. U.; Parcy, F.

10.1101/488114 — plant biology — Posted on 2018-12-06

2192 Prediction of a plant intracellular metabolite content class using image-based deep learning

Krishnan, N. M.; Panda, B.

10.1101/488783 — bioinformatics — Posted on 2018-12-06

2193 Rhizosphere-enriched microbes as a pool to design synthetic communities for reproducible beneficial outputs

Tsolakidou, M.-D.; Stringlis, I. A.; Fanega-Sleziak, N.; Papageorgiou, S.; Tsalakou, A.; Pantelides, I. S.

10.1101/488064 — plant biology — Posted on 2018-12-06

2194 Bottom-up sensory processing can decrease activity and functional connectivity in the default mode like network in rats.

Hinz, R.; Peeters, L. M.; Shah, D.; Missault, S.; Belloy, M.; Vanreusel, V.; Malekzadeh, M.; Verhoye, M.; Van der Linden, A.; Keliris, G. A.

10.1101/482638 — neuroscience — Posted on 2018-12-06

2195 Barley yield formation under abiotic stress depends on the interplay between flowering time genes and environmental cues

Wiegmann, M.; Maurer, A.; Pham, A.; March, T.; Al-Abdallat, A.; Thomas, W.; Bull, H.; Shahid, M.; Eglinton, J.; Baum, M.; Flavell, A.; Tester, M.; Pillen, K.

10.1101/488080 — genetics — Posted on 2018-12-06

2196 Fin whale (Balaenoptera physalus) mitogenomics: A cautionary tale of defining sub-species from mitochondrial sequence monophyly

Cabrera, A. A.; Hoekendijk, J. P. A.; Aguilar, A.; Barco, S. G.; Berrow, S.; Bloch, D.; Borrell, A.; Cunha, H. A.; Dalla Rosa, L.; Dias, C. P.; Gauffier, P.; Hao, W.; Landry, S.; Larsen, F.; Martin, V.; Mizroch, S.; Oosting, T.; Oien, N.; Pampoulie, C.; Panigada, S.; Prieto, R.; Ramp, C.; Rivera-Leon, V. E.; Robbins, J.; Ryan, C.; Schall, E.; Sears, R.; Silva, M. A.; Urban, J.; Wenzel, F. W.; Palsboll, P. J.; Berube, M.

10.1101/488130 — evolutionary biology — Posted on 2018-12-06

2197 On the impact of chemo-mechanically induced phenotypic transitions in gliomas

Mascheroni, P.; Lopez Alfonso, J. C.; Kalli, M.; Stylianopoulos, T.; Meyer-Hermann, M.; Hatzikirou, H.

10.1101/476150 — biophysics — Posted on 2018-12-06

2198 Differential binding cell-SELEX: method for identification of cell specific aptamers using high throughput sequencing

Pleiko, K.; Saulite, L.; Parfejevs, V.; Miculis, K.; Vjaters, E.; Riekstina, U.

10.1101/466722 — molecular biology — Posted on 2018-12-06

2199 Forest loss as a catalyst of population and biodiversity change

Daskalova, G. N.; Myers-Smith, I. H.; Bjorkman, A. D.; Blowes, S. A.; Supp, S. R.; Magurran, A.; Dornelas, M.

10.1101/473645 — ecology — Posted on 2018-12-06

2200 Environmental Optimization Enables Maintenance of Quiescent Hematopoietic Stem Cells Ex Vivo

Kobayashi, H.; Morikawa, T.; Okinaga, A.; Hamano, F.; Hashidate-Yoshida, T.; Watanuki, S.; Hishikawa, D.; Shindou, H.; Arai, F.; Kabe, Y.; Suematsu, M.; Shimizu, T.; Takubo, K.

10.1101/475905 — cell biology — Posted on 2018-12-06

2201 Divergent effects of acute and prolonged interleukin 33 exposure onmast cell IgE-mediated functions

Rönnberg, E.; Ghaib, A.; Ceriol, C.; Enoksson, M.; Arock, M.; Säfholm, J.; Ekoff, M.; Nilsson, G.

10.1101/463950 — immunology — Posted on 2018-12-06

2202 A Reptilian Endogenous Foamy Virus Sheds Light on the Early Evolution of Retroviruses

Wei, X.; Chen, Y.; Duan, G.; Holmes, E. C.; Cui, J.

10.1101/426585 — evolutionary biology — Posted on 2018-12-06

2203 Identifying the cognitive processes underpinning hippocampal-dependent tasks

Clark, I. A.; Hotchin, V.; Monk, A.; Pizzamiglio, G.; Liefgreen, A.; Maguire, E. A.

10.1101/377408 — neuroscience — Posted on 2018-12-06

2204 Environmental DNA for the enumeration and management of Pacific salmon

Levi, T.; Allen, J. M.; Bell, D.; Joyce, J.; Russell, J. R.; Tallmon, D. A.; Vulstek, S. C.; Yang, C.; Yu, D. W.

10.1101/394445 — ecology — Posted on 2018-12-06

2205 The dynamic association of SPO11-1 with conformational changes of meiotic axial elements in maize

Ronceret, A.; Golubovskaya, I.; Ku, J.-C.; Lee, D. H.; Timofejeva, L.; Angoa, A. K. G.; Kao, Y.-H.; Kremling, K.; Williams-Carrier, R.; Meeley, R.; Barkan, A.; Cande, W. Z.; Wang, C.-J. R.

10.1101/489278 — molecular biology — Posted on 2018-12-06

2206 The Accuracy of Histopathological and Cytopathological Techniques in the Identification of the Mycetoma Causative Agents

Fahal, A. H.; Siddig, E. E.; Mhmoud, N. A.; Bakhiet, S. M.; Abdallah, O. B.; Mekki, S. O.; El Dawi, N. I.; Van de Sande, W.

10.1101/489286 — microbiology — Posted on 2018-12-06

2207 Ancestry-specific association mapping in admixed populations

Skotte, L.; Jorsboe, E.; Korneliussen, T. S.; Moltke, I.; Albrechtsen, A.

10.1101/014001 — genetics — Posted on 2018-12-06

2208 Sparse Bayesian learning for predicting phenotypes and ranking influential markers in yeast

Ayat, M.; Domaratzki, M.

10.1101/489245 — bioinformatics — Posted on 2018-12-06

2209 Molecular epidemiology and whole genome sequencing analysis of clinical Mycobacterium bovis from Ghana

Otchere, I. D.; van Tonder, A. J.; Asante-Poku, A.; Sanchez-Buso, L.; Coscolla, M.; Osei-Wusu, S.; Asare, P.; Aboagye, S. Y.; Ekuban, S. A.; Yahayah, A. I.; Forson, A.; Baddoo, A.; Laryea, C.; Parkhill, J.; Harris, S. R.; Gagneux, S.; Yeboah-Manu, D.

10.1101/489203 — microbiology — Posted on 2018-12-06

2210 Biopurification system as a source of pesticide-tolerant bacteria able to degrade the commonly used pesticides chlorpyrifos and iprodione

Diez, C.; Lamilla, C.; Leiva, B.; Levio, M.; Donoso, P.; Briceno, G.; Schalchli, H.; Gallardo, F.; M. Cristina Diez, Claudio Lamilla, Barbara Leiva, Marcela Levio, Pamela Donoso-Pinol,,

10.1101/489252 — microbiology — Posted on 2018-12-06

2211 Osmoregulation in freshwaters: Gene expression in the gills of a Neotropical cichlid in contrasting pH and ionic environments

Willis, S. C.; Saenz, D. E.; Wang, G.; Hollenbeck, C. M.; Rocha, L. A.; Portnoy, D. S.; Cai, J. J.; Winemiller, K. O.

10.1101/489211 — ecology — Posted on 2018-12-06

2212 Ecosystem models of Lake Victoria (East Africa): exploring the sensitivity of ecosystem effects of fishing to model choice

Natugonza, V.; Ainsworth, C.; Sturludottir, E.; Musinguzi, L.; Ogutu-Ohwayo, R.; Tomasson, T.; Nyamweya, C.; Stefansson, G.

10.1101/489260 — ecology — Posted on 2018-12-06

2213 In-season internal and external training load quantification of an elite European soccer team

Oliveira, R. S.; Brito, J. P.; Martins, A.; Mendes, B.; Calvete, F.; Carrico, S.; Marinho, D.; Ferraz, R.; Marques, M. C.

10.1101/489187 — physiology — Posted on 2018-12-06

2214 The importance of assigning responsibility during evaluation in order to increase student satisfaction from physical education classes: A model of structural equations

LEYTON ROMAN, M.; LOBATO MUNOZ, S.; BAUTISTA, M.; JIMENEZ CASTUERA, R.; Susana Lobato, Marco Batista, Ruth Jimenez,

10.1101/489229 — physiology — Posted on 2018-12-06

2215 Changes in clock gene expression in esophagus in rat reflux esophagitis

Hashimoto, A.; Uemura, R.; Sawada, A.; Nadatani, Y.; Otani, K.; Hosomi, S.; Nagami, Y.; Tanaka, F.; Kamata, N.; Taira, K.; Yamagami, H.; Tanigawa, T.; Watanabe, T.; Fujiwara, Y.

10.1101/489195 — pathology — Posted on 2018-12-06

2216 Induction of AMPK activation by N,N-Diarylurea FND-4b decreases growth and increases apoptosis in triple negative and estrogen-receptor positive breast cancers

Johnson, J.; Rychahou, P.; Sviripa, V. M.; Weiss, H. L.; Liu, C.; Watt, D.; Evers, B. M.

10.1101/489179 — cancer biology — Posted on 2018-12-06

2217 Cadherin switch marks germ layer formation in the diploblastic sea anemone Nematostella vectensis

Pukhlyakova, E.; Kirillova, A.; Kraus, Y.; Technau, U.

10.1101/488270 — developmental biology — Posted on 2018-12-06

2218 High temperature limits on developmental canalization in the ascidian Ciona intestinalis

Irvine, S. Q.; McNulty, K. B.; Siler, E. M.; Jacobson, R. E.

10.1101/488668 — developmental biology — Posted on 2018-12-06

2219 Dynamics of human gut microbiota and short-chain fatty acids in response to dietary interventions with three fermentable fibers

Schmidt, T. M.; Baxter, N. T.; Waldron, C.; Alexander, S. W.; Venkataraman, A.; Kim, K.

10.1101/487900 — microbiology — Posted on 2018-12-06

2220 Local Contractions Regulate E-Cadherin Adhesions, Rigidity Sensing and Epithelial Cell Sorting

Yang, Y.; Nguyen, E.; Narayana, G. H. N. S.; Heuze, M.; Mege, R.-M.; Ladoux, B.; Sheetz, M. P.

10.1101/318642 — cell biology — Posted on 2018-12-05

2221 DrugCombDB: a comprehensive database of drug combinations toward network medicine and combination therapy

Deng, L.; Zou, B.; Zhang, W.; Liu, H.

10.1101/477547 — bioinformatics — Posted on 2018-12-05

2222 Myosin-II mediated traction forces evoke localized Piezo1 Ca2+ flickers

Ellefsen, K.; Chang, A.; Holt, J. R.; Nourse, J. L.; Arulmoli, J.; Mekhdjian, A.; Abuwarda, H.; Tombola, F.; Flanagan, L. A.; Dunn, A. R.; Parker, I.; Pathak, M. M.

10.1101/294611 — biophysics — Posted on 2018-12-05

2223 Sex differences in post-stroke aphasia rates are caused by age. A meta-analysis and database query

Wallentin, M.

10.1101/407296 — neuroscience — Posted on 2018-12-05

2224 Direct PCR amplification of 16S rRNA genes offers accelerated bacterial identification using the MinION™ nanopore sequencer

Kai, S.; Matsuo, Y.; Nakagawa, S.; Kryukov, K.; Matsukawa, S.; Tanaka, H.; Iwai, T.; Imanishi, T.; Hirota, K.

10.1101/435859 — microbiology — Posted on 2018-12-05

2225 Dye-free retinal angiography using blood-oxygenation modulation

MacKenzie, L. E.; Choudhary, T. R.; Fernandez Ramos, J.; Benjamin, N.; Delles, C.; Harvey, A. R.

10.1101/485839 — biophysics — Posted on 2018-12-05

2226 High-throughput microfluidic characterization of erythrocyte shape and mechanical variability

Reichel, F.; Mauer, J.; Nawaz, A. A.; Gompper, G.; Guck, J.; Fedosov, D. A.

10.1101/488189 — biophysics — Posted on 2018-12-05

2227 Excitatory GABAergic signalling is associated with acquired benzodiazepine resistance in status epilepticus

Burman, R. J.; Calin, A.; Codadu, N. K.; Wright, R.; Newey, S. E.; van den Berg, M.; Lee, J. H.; Parish, R. R.; Wilmshurst, J. M.; Akerman, C. J.; Trevelyan, A. J.; Raimondo, J. V.

10.1101/478594 — neuroscience — Posted on 2018-12-05

2228 RNA-DEPENDENT AMPLIFICATION OF MAMMALIAN mRNA ENCODING EXTRACELLULAR MATRIX COMPONENTS: IDENTIFICATION OF CHIMERIC RNA INTERMEDIATES FOR alpha1, beta1, AND gamma1 CHAINS OF LAMININ.

Volloch, V.; Rits, S.; Olsen, B. R.

10.1101/376293 — molecular biology — Posted on 2018-12-05

2229 A meta-analysis of two high-risk prospective cohort studies reveals autism-specific transcriptional changes to chromatin, autoimmune, and environmental response genes in umbilical cord blood

Mordaunt, C. E.; Park, B. Y.; Bakulski, K. M.; Feinberg, J. I.; Croen, L. A.; Ladd-Acosta, C.; Newschaffer, C. J.; Volk, H. E.; Ozonoff, S.; Hertz-Picciotto, I.; LaSalle, J. M.; Schmidt, R. J.; Fallin, D.

10.1101/486498 — genomics — Posted on 2018-12-05

2230 Genomic diversity and novel genome-wide association with fruit morphology in Capsicum, from 746k polymorphic sites.

Colonna, V.; D'Agostino, N.; Garrison, E.; Meisner, J.; Albrechtsen, A.; Facchiano, A.; Cardi, T.; Tripodi, P.

10.1101/487165 — genetics — Posted on 2018-12-05

2231 Follicle stimulating hormone is an autocrine regulator of the ovarian cancer metastatic niche through Notch signaling

Gera, S.; Kumar S, S.; N. Swamy, S.; Bhagat, R.; Vadaparty, A.; Gawari, R.; Bhat, R.; Dighe, R. R.

10.1101/355537 — cancer biology — Posted on 2018-12-05

2232 Uncovering the signaling landscape controlling breast cancer cell migration identifies novel metastasis driver genes

Koedoot, E.; Fokkelman, M.; Rogkoti, V.-M.; Le Devedec, S.; van de Sandt, I.; de Bont, H.; Pont, C.; Klip, J. E.; Wiemer, E. A. C.; Smid, M.; Stoilov, P.; Foekens, J. A.; Martens, J. W. M.; van de Water, B.

10.1101/479568 — cancer biology — Posted on 2018-12-05

2233 Plant-derived coumarins shape the composition of an Arabidopsis synthetic root microbiome

Voges, M. J. E. E. E.; Bai, Y.; Schulze-Lefert, P.; Sattely, E. S.

10.1101/485581 — plant biology — Posted on 2018-12-05

2234 Uncovering a role for the dorsal hippocampal commissure in episodic memory

Postans, M.; Parker, G.; Lundell, H.; Ptito, M.; Hamandi, K.; Gray, W.; Aggleton, J.; Dyrby, T.; Jones, D.; Winter, M.

10.1101/415158 — neuroscience — Posted on 2018-12-05

2235 An ER CREC family protein is a novel regulator of the egress proteolytic cascade in malaria parasites

Fierro, M. A.; HortuaTriana, M. A.; Brooks, C. F.; Asady, B.; Li, C.; Moreno, S. N. J.; Muralidharan, V.

10.1101/457481 — cell biology — Posted on 2018-12-05

2236 The landscape of DNA methylation associated with the transcriptomic network in laying hens and broilers gets insight into embryonic muscle development in chicken

Liu, Z.; Shen, X.; Han, S.; Wang, Y.; Zhu, Q.; Cui, C.; He, H.; Zhao, J.; Chen, Y.; Zhang, Y.; Ye, L.; Zhang, Z.; Liu, D.; Zhao, X.; Yin, H.

10.1101/470278 — bioinformatics — Posted on 2018-12-05

2237 DeepWAS: Multivariate genotype-phenotype associations by directly integrating regulatory information using deep learning

Arloth, J.; Eraslan, G.; Andlauer, T. F. M.; Martins, J.; Iurato, S.; Kühnel, B.; Waldenberger, M.; Frank, J.; Gold, R.; Hemmer, B.; Luessi, F.; Nischwitz, S.; Paul, F.; Wiendl, H.; Gieger, C.; Heilmann-Heimbach, S.; Kacprowski, T.; Laudes, M.; Meitinger, T.; Peters, A.; Rawal, R.; Strauch, K.; Lucae, S.; Müller-Myhsok, B.; Rietschel, M.; Theis, F. J.; Binder, E. B.; Mueller, N. S.

10.1101/069096 — systems biology — Posted on 2018-12-05

2238 Isolation and characterisation of mutants with altered seminal root numbers in hexaploid wheat

Shorinola, O.; Kaye, R.; Golan, G.; Peleg, Z.; Kepinski, S.; Uauy, C.

10.1101/364018 — plant biology — Posted on 2018-12-05

2239 Differential impact of reward and punishment on functional connectivity after skill learning

Steel, A.; Silson, E. H.; Stagg, C. J.; Baker, C. I.

10.1101/243899 — neuroscience — Posted on 2018-12-05

2240 The commercial antimicrobial triclosan induces high levels of antibiotic tolerance in vitro and reduces antibiotic efficacy up to 100-fold in vivo

Westfall, C. S.; Flores-Mireles, A. L.; Robinson, J. I.; Lynch, A. J. L.; Hultgren, S.; Henderson, J. P.; Levin, P. A.

10.1101/090829 — microbiology — Posted on 2018-12-05

2241 Separate the wheat from the chaff: genomic scan for local adaptation in the red coral Corallium rubrum

Pratlong, M.; Haguenauer, A.; Brener, K.; Mitta, G.; Toulza, E.; Garrabou, J.; Bensoussan, N.; Pontarotti, P.; Aurelle, D.

10.1101/306456 — evolutionary biology — Posted on 2018-12-05

2242 Distinguishing cells from empty droplets in droplet-based single-cell RNA sequencing data

Lun, A.; Riesenfeld, S.; Andrews, T.; Dao, T. P.; Gomes, T.; participants in the 1st Human Cell Atlas Jamboree, ; Marioni, J.

10.1101/234872 — bioinformatics — Posted on 2018-12-05

2243 frenchFISH: Poisson models for quantifying DNA copy-number from fluorescence in situ hybridisation of tissue sections

Macintyre, G.; Piskorz, A. M.; Ross, E.; Morse, D. B.; Yuan, K.; Ennis, D.; Pike, J. A.; Goranova, T.; McNeish, I.; Brenton, J. D.; Markowetz, F.

10.1101/487926 — bioinformatics — Posted on 2018-12-05

2244 The accuracy of estimating time to contact in transversal motion and head-on motion

Daneshi, A.; Azarnoush, H.; Towhidkhah, F.; Tranvouez-Bernardin, D.; Faubert, J.

10.1101/487942 — neuroscience — Posted on 2018-12-05

2245 Cell growth is an omniphenotype

Peterson, T.

10.1101/487157 — systems biology — Posted on 2018-12-05

2246 Establishment and imaging evaluation of Guangxi Ba-Ma mini pigs as a model of cerebral hernia induced by acute intracranial hypertension

Zhou, J.; Huang, L.; Zhu, X.; Wei, W.; Feng, Y.; Ma, X.; Zhang, L.; Zeng, G.; Zhang, J.; Li, W.; Tang, H.

10.1101/487967 — neuroscience — Posted on 2018-12-05

2247 Mechanobiological Conditioning of Mesenchymal Stem Cells Enhances Therapeutic Angiogenesis by Inducing a Hybrid Pericyte-Endothelial Phenotype

Lee, J.; Henderson, K.; Armenta-Ochoa, M.; Veith, A.; Maceda, P.; Yoon, E.; Samarneh, L.; Wong, M.; Dunn, A.; Baker, A.

10.1101/487710 — bioengineering — Posted on 2018-12-05

2248 Error processing in the adolescent brain: Age-related differences in electrophysiology and links with post-error adjustments but no relationship to cingulate cortex structure

Overbye, K.; Walhovd, K. B.; Paus, T.; Fjell, A. M.; Huster, R. J.; Tamnes, C. K.

10.1101/487959 — neuroscience — Posted on 2018-12-05

2249 Light remote control of alternative splicing in roots through TOR kinase

Riegler, S.; Servi, L.; Fuchs, A.; Godoy Herz, M. A.; Kubaczka, M. G.; Venhuizen, P.; Schweighofer, A.; Simpson, C.; Brown, J. W. S.; Meyer, C.; Kalyna, M.; Barta, A.; Petrillo, E.

10.1101/472126 — molecular biology — Posted on 2018-12-05

2250 Widespread PERK-dependent repression of ER targets in response to ER stress

Gonen, N.; Sabath, N.; Burge, C. B.; Shalgi, R.

10.1101/487934 — molecular biology — Posted on 2018-12-05

2251 Stress-induced phospho-ubiquitin formation causes parkin degradation

Kovalchuke, L.; Mosharov, E. V.; Levy, O. A.; Greene, L. A.

10.1101/484857 — molecular biology — Posted on 2018-12-05

2252 CRISPR spacers indicate preferential matching of specific virioplankton genes

Nasko, D. J.; Ferrell, B. D.; Moore, R. M.; Bhavsar, J.; Polson, S. W.; Wommack, K. E.

10.1101/487884 — microbiology — Posted on 2018-12-05

2253 The effect of plasma lipids and lipid lowering interventions on bone mineral density: a Mendelian randomization study

ZHENG, J.; Brion, M.-J.; Kemp, J.; Warrington, N.; Borges, C.; Hemani, G.; Richardson, T.; Qiao, Z.; Haycock, P.; Ala-Korpela, M.; Davey Smith, G.; Tobias, J.; Evans, D.

10.1101/480426 — epidemiology — Posted on 2018-12-05

2254 Motor Learning Without Moving: Proprioceptive and Predictive Hand Localization After Passive Visuoproprioceptive Discrepancy Training

Mostafa, A. A.; 't Hart, B.; Henriques, D. Y.

10.1101/384941 — neuroscience — Posted on 2018-12-05

2255 The Ca2+ sensor protein CMI1 fine tunes root development, auxin distribution and responses

Hazak, O.; Mamon, E.; Lavy, M.; Sternberg, H.; Behera, S.; Schmitz-Thom, I.; Bloch, D.; Dementiev, O.; Gutman, I.; Danziger, T.; Schwarz, N.; Abuzeineh, A.; Mockaitis, K.; Estelle, M.; Hirsch, J.; Kudla, J.; Yalovsky, S.

10.1101/488536 — plant biology — Posted on 2018-12-05

2256 Contingency in the convergent evolution of a regulatory network: Dosage compensation in Drosophila

Bachtrog, D.; Ellison, C.

10.1101/488569 — evolutionary biology — Posted on 2018-12-05

2257 A biosafety level-2 dose-dependent lethal mouse model of spotted fever rickettsiosis: Rickettsia parkeri Atlantic Rainforest-like isolate

Londono, A. F.; Mendell, N. L.; Walker, D. H.; Bouyer, D. H.; Andres F. Londono, Nicole L. Mendell, David H. Walker, Donald H. Bouyer,

10.1101/488494 — pathology — Posted on 2018-12-05

2258 Schistosoma mansoni infection and risk factors among fishermen at Lake Hawassa, Southern Ethiopia

Menjetta, T.; Dana, D.; Debalke, S.

10.1101/488502 — microbiology — Posted on 2018-12-05

2259 Lessening of porcine epidemic diarrhoea virus susceptibility in piglets after editing of the CMP-N-glycolylneuraminic acid hydroxylase gene with CRISPR/Cas9 to nullify N-glycolylneuraminic acid expression

Tu, C.-F.; Chuang, C.-k.; Hsiao, K.-H.; Chen, C.-H.; Chen, C.-M.; Peng, S.-H.; Su, Y.-H.; Chiou, M.-T.; Yen, C.-H.; Hung, S.-W.; Yang, T.-S.; Chen, C.-M.; Ching-Fu Tu, Chin-kai Chuang, Kai-Hsuan Hsiao, Chien-Hong Chen, Chie-Min Chen, Su-Hei Peng, Yu.-Hsiu,

10.1101/488510 — epidemiology — Posted on 2018-12-05

2260 Prevalence and genotype-specific distribution of Human papillomavirus in Burundi according to HIV status and urban or rural residence and its implications for control

NDIZEYE, Z.; Vanden Broeck, D.; Lisbeth, R. L.; Bogers, J.; Benoy, I.; Van Geertruyden, J.-P.

10.1101/488429 — epidemiology — Posted on 2018-12-05

2261 ETAPOD: A forecast model for prediction of black pod disease Outbreak in Nigeria

Etaware, P. M.; Adedeji, A. R.; Osowole, O. I.; Odebode, A. C.; Peter Mudiaga Etaware,

10.1101/488452 — plant biology — Posted on 2018-12-05

2262 Separate Polycomb Response Elements control chromatin state and activation of the vestigial gene

Ahmad, K.; Spens, A. E.

10.1101/488478 — genetics — Posted on 2018-12-05

2263 Genetics of adaptation of the ascomycetous fungus Podospora anserina to submerged cultivation

Kudryavtseva, O. A.; Safina, K. R.; Vakhrusheva, O. A.; Logacheva, M. D.; Penin, A. A.; Neretina, T. V.; Moskalenko, V. N.; Glagoleva, E. S.; Bazykin, G. A.; Kondrashov, A. S.

10.1101/488486 — evolutionary biology — Posted on 2018-12-05

2264 Effects of long-lasting insecticide net (LLINs) ownership/ utilisation indicators on annual household malaria episodes (AHMEs) in Bamenda, Santa and Tiko Health Districts in Cameroon

Cho, N. F.; Cho-Azieh, N. F. P.; Fri, M. S.; Menyi, C. B.; Kofon, J. P.; Tassang, N. F. C.; Peter, N. F.; Andrew, T. N.

10.1101/488445 — epidemiology — Posted on 2018-12-05

2265 Electromyographic analysis of the suprahyoid muscles in infants based on the lingual fraenulum attachment during breastfeeding

Franca, E. C. d. L.; Albuquerque, L. C. A.; Martinelli, R. C. L.; Goncalves, I. M. F.; Souza, C. B.; Barbosa, M. A.; Ellia Christinne de Lima Franca Lucas C Aragao Roberta Lopes de Castro Martinelli Ilda,

10.1101/488437 — epidemiology — Posted on 2018-12-05

2266 Hfq Globally Binds and Destabilizes the bound sRNAs and mRNAs in Yersinia pestis

Yanping, H.; Dong, C.; Yanfeng, Y.; Hongduo, W.; Zizhong, L.; Yaqiang, X.; Ruifu, Y.; Yi, Z.

10.1101/487769 — genomics — Posted on 2018-12-05

2267 Renal medullary carcinomas depend upon SMARCB1 loss and are sensitive to proteasome inhibition

Hong, A. L.; Tseng, Y.-Y.; Wala, J. A.; Kim, W. J.; Kynnap, B. D.; Doshi, M. B.; Kugener, G.; Sandoval, G. J.; Howard, T. P.; Li, J.; Yang, X.; Tillgren, M.; Ghandi, M.; Sayeed, A.; Deasy, R.; Ward, A.; McSteen, B.; Labella, K. M.; Keskula, P.; Tracy, A.; Connor, C.; Clinton, C. M.; Church, A. J.; Crompton, B. D.; Janeway, K. A.; Van Hare, B.; Sandak, D.; Gjoerup, O.; Bandopadhayay, P.; Clemons, P. A.; Schreiber, S. L.; Root, D. E.; Gokhale, P. C.; Chi, S. N.; Mullen, E. A.; Roberts, C. W.; Kadoch, C.; Beroukhim, R.; Ligon, K. L.; Boehm, J. S.; Hahn, W.

10.1101/487579 — cancer biology — Posted on 2018-12-05

2268 Proteome-wide solubility and thermal stability profiling reveals distinct regulatory roles for ATP

Sridharan, S.; Kurzawa, N.; Werner, T.; Guenthner, I.; Helm, D.; Huber, W.; Bantscheff, M.; Savitski, M. M.

10.1101/488163 — systems biology — Posted on 2018-12-05

2269 The rice G protein γ subunit qPE9-1 positively regulates grain-filling process by interacting with abscisic acid and auxin

Zhang, D.; Zhang, M.; Zhou, Y.; Wang, Y.; Chen, H.; Xu, W.; Zhang, L.; Pan, T.; Lv, B.; Liang, G.; Liang, J.

10.1101/487850 — plant biology — Posted on 2018-12-05

2270 Ancient DNAs and the Neolithic Chinese super-grandfather Y haplotypes

Zhang, Y.; Lei, X.; Chen, H.; Zhou, H.; Huang, S.

10.1101/487918 — evolutionary biology — Posted on 2018-12-05

2271 New methods to calculate concordance factors for phylogenomic datasets

Minh, B. Q.; Hahn, M.; Lanfear, R.

10.1101/487801 — bioinformatics — Posted on 2018-12-05

2272 High-throughput microfluidic characterization of erythrocyte shape and mechanical variability

Reichel, F.; Mauer, J.; Nawaz, A. A.; Gompper, G.; Guck, J.; Fedosov, D. A.

10.1101/488189 — biophysics — Posted on 2018-12-05

2273 An archaeal symbiont-host association from the deep terrestrial subsurface

Schwank, K.; Bornemann, T. L. V.; Dombrowski, N.; Spang, A.; Banfield, J. F.; Probst, A.

10.1101/486977 — microbiology — Posted on 2018-12-05

2274 Reconciling biodiversity conservation, food production and farmers’ demand

Montoya, D.; Gaba, S.; De Mazancourt, C.; Bretagnolle, V.; Loreau, M.

10.1101/485607 — ecology — Posted on 2018-12-05

2275 Use of MYB as a new synthetic activator to enhance transgene expression within repressed Polycomb chromatin

Barrett, C. M.; McCraken, R.; Elmer, J.; Haynes, K. A.

10.1101/487736 — synthetic biology — Posted on 2018-12-05

2276 Bilateral Asymmetry of the Forearm Bones as Possible Evidence of Antemortem Trauma in the StW 573 Australopithecus Skeleton from Sterkfontein Member 2 (South Africa)

Heile, A. J.; Pickering, T. R.; Heaton, J. L.; Clarke, R. J.

10.1101/486076 — paleontology — Posted on 2018-12-05

2277 Double Stranded DNA Damage and Genome Editing Trigger Ribosome Remodeling and Translational Shutdown

Riepe, C.; Zelin, E.; Wyman, S. K.; Nguyen, D. N.; Liang, J. R.; Frankino, P. A.; Meacham, Z. A.; Vu, J. T.; Marson, A.; Ingolia, N. T.; Corn, J. E.

10.1101/486704 — molecular biology — Posted on 2018-12-05

2278 Co-opted transposons help perpetuate conserved higher-order chromosomal structures

Choudhary, M. N.; Friedman, R. Z.; Wang, J. T.; Jang, H. S.; Zhuo, X.; Wang, T.

10.1101/485342 — genomics — Posted on 2018-12-05

2279 Genetic and physical interactions between the organellar mechanosensitive ion channel homologs MSL1, MSL2, and MSL3 reveal a role for inter-organellar communication in plant development

Lee, J.; Wilson, M.; Richardson, R.; Haswell, E.

10.1101/487694 — plant biology — Posted on 2018-12-05

2280 Face-selective units in human ventral temporal cortex reactivate during free recall

Khuvis, S.; Yeagle, E. M.; Norman, Y.; Grossman, S.; Malach, R.; Mehta, A. D.

10.1101/487686 — neuroscience — Posted on 2018-12-05

2281 A novel mutation alters the stability of PapA2 resulting in the complete abrogation of sulfolipids in clinical mycobacterial strains

Panchal, V. N.; Jatana, N.; Malik, A.; Taneja, B.; Pal, R.; Bhatt, A.; Besra, G. S.; Thukral, L.; Chaudhary, S.; Rao, V.

10.1101/487124 — molecular biology — Posted on 2018-12-05

2282 Analysis of 50 years of coral disease research visualized through the scope of network theory

Montilla, L. M.; Ascanio, A.; Verde, A.; Croquer, A.

10.1101/487447 — ecology — Posted on 2018-12-05

2283 Single molecule localization microscopy with autonomous feedback loops for ultrahigh precision

Coelho, S.; baek, J.; Graus, M. S.; Halstead, J. M.; Nicovich, P. R.; Feher, K.; Gandhi, H.; Gaus, K.

10.1101/487728 — biophysics — Posted on 2018-12-05

2284 Semi-in vitro Reconstitution of Roseocin, a Two-Component Lantibiotic from an Actinomycete

Singh, M.; Sareen, D.

10.1101/464644 — biochemistry — Posted on 2018-12-04

2285 Network-based identification of genetic factors in Ageing, lifestyle and Type 2 Diabetes that Influence in the progression of Alzheimer’s disease

Chowdhury, U. N.; Islam, M. B.; Ahmad, S.; Huq, F.; Quinn, J. M. W.; Moni, M. A.

10.1101/482844 — molecular biology — Posted on 2018-12-04

2286 Pharmacological Restoration of Visual Function in a Zebrafish Model of von-Hippel Lindau Disease

Ward, R.; Slater, K.; Ali, Z.; Reynolds, A. L.; Jensen, L. D.; Kennedy, B. N.

10.1101/485730 — pharmacology and toxicology — Posted on 2018-12-04

2287 Bioinformatic analysis of long-lasting transcriptional and translational changes in the basolateral amygdala following acute stress

Sillivan, S. E.; Jones, M. E.; Jamieson, S.; Rumbaugh, G.; Miller, C. A.

10.1101/485888 — neuroscience — Posted on 2018-12-04

2288 Prospects of using Avocado oil for attenuating quorum sensing regulated virulence, bio-filming formation and its antibacterial and antioxidant activities

Hanan, M. M.; Amina, M.; Ahamad, S. R.; Hassan, W. H. B.

10.1101/486928 — microbiology — Posted on 2018-12-04

2289 Evolutionary constraints on the complexity of genetic regulatory networks allow predictions of the total number of genetic interactions

Campos-Gonzalez, A. I.; Freyre-Gonzalez, J. A.

10.1101/486647 — systems biology — Posted on 2018-12-04

2290 Evolution of pathogenic and nonpathogenic yeasts mitochondrial genomes inferred by supertrees and supermatrices with divergence estimates based on relaxed molecular clocks

Lopes, L. R.; Ferreira, R. C. e.; Antoneli, F.; Paiva, P. B.; Briones, M. R.

10.1101/486944 — genomics — Posted on 2018-12-04

2291 Computational tools to detect signatures of mutational processes in DNA from tumours: a review and empirical comparison of performance

Omichessan, H.; Severi, G.; Perduca, V.

10.1101/483982 — bioinformatics — Posted on 2018-12-04

2292 Detecting Diffusion Imaging constructive connectivity analysis for What stream Visual Pathways with correlations to Visual Agnosia

ELUMALAI, G.; Vinodhanand, G.; Brown, V. L. C.; Dasari, J.; Kurra, V. H. K.; Douglas, K. A.; Ghanta, N. A. S. V.; Kammila, J. N. S.; Singh, D.; Tricia Dyal, N.; Jose Sherly, P.; Joy, A. M.

10.1101/486639 — neuroscience — Posted on 2018-12-04

2293 Bacterial community composition of recycled irrigation water of a NFT-type experimental system, with and without a slow sand filter

Cafa, G.; Thwaites, R.; Dickinson, M.

10.1101/486464 — microbiology — Posted on 2018-12-04

2294 Spatiotemporal neural correlates of brain-computer interface learning

Corsi, M.-C.; Chavez, M.; Schwartz, D.; George, N.; Hugueville, L.; Khan, A. E.; Dupont, S.; Bassett, D. S.; De Vico Fallani, F.

10.1101/487074 — neuroscience — Posted on 2018-12-04

2295 Schizotypy-related magnetization of cortex in healthy adolescence is co-located with expression of schizophrenia risk genes

Romero-Garcia, R.; Seidlitz, J.; Whitaker, K. J.; Morgan, S. E.; Fonagy, P.; Dolan, R. J.; Jones, P. B.; Goodyer, I. M.; Suckling, J.; NSPN Consortium, ; Vertes, P. E.; Bullmore, E. T.

10.1101/487108 — neuroscience — Posted on 2018-12-04

2296 CompStor Novos: a low cost yet fast assembly-based variant calling for personal genomes

Oenning, T.; Bae, T.; Iyengar, A.; Brickner, B.; Soysa, M.; Wright, N.; Kumar, P.; Indupuru, S.; Abyzov, A.; Coker, J.

10.1101/486092 — genomics — Posted on 2018-12-04

2297 Roost selection by male northern long-eared bats (Myotis septentrionalis) at their western range edge

Alston, J.; Abernethy, I.; Keinath, D.; Goheen, J.

10.1101/487256 — zoology — Posted on 2018-12-04

2298 Boundary conditions for early life converge to an organo-sulfur metabolism

Goldford, J. E.; Hartman, H.; Marsland, R.; Segre, D.

10.1101/487660 — systems biology — Posted on 2018-12-04

2299 Guiding biomolecular interactions in cells using de novo protein-protein interfaces

Smith, A. J.; Thomas, F.; Shoemark, D.; Woolfson, D. N.; Savery, N. J.

10.1101/486902 — synthetic biology — Posted on 2018-12-04

2300 Exenatide reverts the high-fat-diet-induced impairment of BDNF signaling and inflammatory response in an animal model of Alzheimer’s disease

Bomba, M.; Granzotto, A.; Castelli, V.; Lattanzio, R.; Cimini, A.; Sensi, S. L.

10.1101/487629 — neuroscience — Posted on 2018-12-04

2301 De novo assembly of the Pasteuria penetrans genome reveals high plasticity, host dependency, and BclA-like collagens.

Orr, J. N.; Mauchline, T. H.; Cock, P. J.; Blok, V. C.; Davies, K. G.

10.1101/485748 — microbiology — Posted on 2018-12-04

2302 Recombination-aware phylogenomics unravels the complex divergence of hybridizing species.

Li, G.; Figueiro, H. V.; Eizirik, E.; Murphy, W. J.

10.1101/485904 — evolutionary biology — Posted on 2018-12-04

2303 Decomposing the causes for niche differentiation between species using hypervolumes

Carvalho, J. C.; Cardoso, P.

10.1101/485920 — ecology — Posted on 2018-12-04

2304 Golden magic: RSH enzymes for (p)ppGpp metabolism in the diatom Phaeodactylum tricornutum.

Avilan, L.; Puppo, C.; Villain, A.; Bouveret, E.; Menand, B.; Field, B.; Gontero, B.

10.1101/487603 — plant biology — Posted on 2018-12-04

2305 Glendonite occurrences in the Tremadocian of Baltica: first Early Palaeozoic evidence of massive ikaite precipitation at temperate latitude

Popov, L. E.; Alvaro, J. J.; Holmer, L. E.; Bauert, H.; Ghobadi Pour, M.; Dronov, A. V.; Lehnert, O.; Hints, O.; Männik, P.; Zhang, Z.; Zhang, Z.

10.1101/486779 — paleontology — Posted on 2018-12-04

2306 Auditory deviance detection in the human insula: An intracranial EEG study

Blenkmann, A. O.; Collavini, S.; Lubell, J.; Llorens, A.; Funderud, I.; Ivanovic, J.; Larson, P. G.; Meling, T. R.; Bekinschtein, T.; Kochen, S.; Endestad, T.; Knight, R. T.; Solbakk, A.-K.

10.1101/487306 — neuroscience — Posted on 2018-12-04

2307 Skeletal muscle MRI differentiates SBMA and ALS and correlates with disease severity

Klickovic, U.; Zampedri, L.; Sinclair, C.; Wastling, S.; Trimmel, K.; Howard, R.; Malaspina, A.; Sharma, N.; Sidle, K.; Emira, A.; Shah, S.; Yousry, T.; Hanna, M.; Greensmith, L.; Morrow, J.; Thornton, J.; Fratta, P.

10.1101/486910 — neuroscience — Posted on 2018-12-04

2308 Endocrine aryl hydrocarbon receptor signaling is induced by moderate cutaneous exposure to ultraviolet light

Memari, B.; Nguyen, L.; Salehi Tabar, R.; Zago, M.; Fritz, J.; Baglole, C. J.; Goltzman, D.; White, J.

10.1101/487355 — molecular biology — Posted on 2018-12-04

2309 GA-repeats on mammalian X chromosomes support Ohno’s hypothesis of dosage compensation by transcriptional upregulation

D'Souza, E.; Hosage, E.; Weinand, K.; Gisselbrecht, S.; Marktein, V.; Markstein, P.; Bulyk, M.; Markstein, M.

10.1101/485300 — genomics — Posted on 2018-12-04

2310 A meta-analysis of two high-risk prospective cohort studies reveals autism-specific transcriptional changes to chromatin, autoimmune, and environmental response genes in umbilical cord blood

10.1101/486498 — genomics — Posted on 2018-12-04

2311 Predatory plants and patchy cows: modeling cattle interactions with toxic larkspur amid variable heterogeneity

Jablonski, K.; Boone, R.; Meiman, P.

10.1101/487561 — ecology — Posted on 2018-12-04

2312 Accurate sub-population detection and mapping across single cell experiments with PopCorn

Wang, Y.; Hoinka, J.; Przytycka, T. M.

10.1101/485979 — bioinformatics — Posted on 2018-12-04

2313 Posture controls mechanical tuning in the black widow spider mechanosensory system

Mhatre, N.; Sivalinghem, S.; Mason, A. C.

10.1101/484238 — animal behavior and cognition — Posted on 2018-12-04

2314 Anatomical basis and physiological role of cerebrospinal fluid transport through the murine cribriform plate

Norwood, J. N.; Zhang, Q.; Card, D.; Craine, A.; Ryan, T. M.; Drew, P. J.

10.1101/485995 — neuroscience — Posted on 2018-12-04

2315 Temporal patterns of fluoxetine-induced plasticity in the mouse visual cortex

Steinzeig, A.; Cannarozzo, C.; Castren, E.

10.1101/487553 — neuroscience — Posted on 2018-12-04

2316 Decreased grey matter volume in mTBI patients with post-traumatic headache compared to headache-free mTBI patients and healthy controls: a longitudinal MRI study

Burrowes, S. A. B.; Sours Rhodes, C.; Meeker, T. J.; Greenspan, J. D.; Gullapalli, R. P.; Seminowicz, D. A.

10.1101/487538 — neuroscience — Posted on 2018-12-04

2317 Klebsiella quasipneumonaiae provides a window into carbapenemase gene transfer, plasmid rearrangements and nosocomial acquisition from the hospital environment

Mathers, A. J.; Crook, D. W.; Vaughan, A.; Barry, K. E.; Vegesana, K.; Stoesser, N.; Parikh, H.; Sebra, R.; Kotay, S. M.; Walker, A. S.; Sheppard, A. E.

10.1101/486753 — microbiology — Posted on 2018-12-04

2318 The lupus susceptibility locus Sgp3 encodes the suppressor of endogenous retrovirus expression SNERV

Treger, R. S.; Pope, S. D.; Kong, Y.; Tokuyama, M.; Taura, M.; Iwasaki, A.

10.1101/487231 — immunology — Posted on 2018-12-04

2319 Intertwined canonical and non-canonical initiation in dual promoters are pervasive and differentially regulate Polymerase II transcription

Nepal, C.; Hadzhiev, Y.; Tarifeno-Saldivia, E.; Cardenas, R.; Suzuki, A.-M.; Carninci, P.; Peers, B.; Lenhard, B.; Andersen, J. B.; Mueller, F.

10.1101/487496 — genomics — Posted on 2018-12-04

2320 Exploring contributors to variability in estimates of SNP-heritability and genetic correlations from the iPSYCH case-cohort and published meta-studies of major psychiatric disorders.

Schork, A.; Werge, T.

10.1101/487116 — genetics — Posted on 2018-12-04

2321 Non-academic employability of life science PhDs: the importance of training beyond the bench

Her, S.; Jacob, M.; Wang, S.; Xu, S.; Sealey, D.

10.1101/485268 — scientific communication and education — Posted on 2018-12-04

2322 Pheophorbide a, a chlorophyll catabolite may regulate jasmonate signalling during dark-induced senescence in Arabidopsis

Aubry, S.; Fankhauser, N.; Ovinnikov, S.; Zienkiewicz, K.; Feussner, I.; Hortensteiner, S.

10.1101/486886 — plant biology — Posted on 2018-12-04

2323 Plant-derived coumarins shape the composition of an Arabidopsis synthetic root microbiome

Voges, M. J. E. E. E.; Bai, Y.; Schulze-Lefert, P.; Sattely, E. S.

10.1101/485581 — plant biology — Posted on 2018-12-04

2324 Urinary AQP5 is independently associated with eGFR decline in patients with type 2 diabetes and nephropathy

Gao, C.; Zhang, W.

10.1101/486027 — physiology — Posted on 2018-12-04

2325 Topological Data Analysis of Single-cell Hi-C Contact Maps

Carriere, M.; Rabadan, R.

10.1101/486936 — genomics — Posted on 2018-12-04

2326 Genomic diversity and novel genome-wide association with fruit morphology in Capsicum, from 746k polymorphic sites.

Colonna, V.; D'Agostino, N.; Garrison, E. P.; Meisner, J.; Albrechtsen, A.; Facchiano, A.; Cardi, T.; Tripodi, P.

10.1101/487165 — genetics — Posted on 2018-12-04

2327 Genome sequencing analysis identifies high-risk Epstein-Barr virus subtypes for nasopharyngeal carcinoma

Xu, M.; Yao, Y.; Chen, H.; Zhang, S.; Xiang, T.; Cao, S.-M.; Zhang, Z.; Luo, B.; Liu, Z.; Li, Z.; He, G.; Feng, Q.-S.; Chen, L.-Z.; Guo, X.; Jia, W.; Chen, M.-Y.; Zhao, B.; Zhang, X.; Xie, S.-H.; Peng, R.; Chang, E. T.; Pedergnana, V.; Feng, L.; Bei, J.-X.; Xu, R.; Zeng, M.-S.; Ye, W.; Adami, H.-O.; Lin, X.; Zhai, W.; Zeng, Y.-X.; Liu, J.

10.1101/486613 — genetics — Posted on 2018-12-04

2328 Gene augmentation and read-through rescue channelopathy in an iPSC-RPE model of congenital blindness

Shahi, P. K.; Hermans, D.; Sinha, D.; Brar, S.; Moulton, H.; Stulo, S.; Borys, K. D.; Capowski, E.; Pillers, D.-A. M.; Gamm, D. M.; Pattnaik, B. R.

10.1101/485847 — genetics — Posted on 2018-12-04

2329 The impact of the genetic background on gene deletion phenotypes in Saccharomyces cerevisiae

Galardini, M.; Busby, B. P.; Vieitez, C.; Dunham, A. S.; Typas, A.; Beltrao, P.

10.1101/487439 — genetics — Posted on 2018-12-04

2330 Leaf economics guides slow-fast adaptation across the geographic range of A. thaliana

Sartori, K. F. R.; Vasseur, F.; Violle, C.; Baron, E.; Gerard, M.; Rowe, N.; Ayala-Garay, O.; Christophe, A.; Garcia De Jalon, L.; Masclef, D.; Harscouet, E.; Del Rey Granado, M.; Chassagneux, A.; Kazakou, E.; Vile, D.

10.1101/487066 — ecology — Posted on 2018-12-04

2331 Predicted number of driver events per tumor strongly correlates with contribution from anthropogenic and lifestyle risk factors

Belikov, A. V.

10.1101/486860 — cancer biology — Posted on 2018-12-04

2332 Ozymandias: A biodiversity knowledge graph

Page, R. D. M.

10.1101/485854 — bioinformatics — Posted on 2018-12-04

2333 Exponential trajectories, cell size fluctuations and the adder property in bacteria follow from simple chemical dynamics and division control

Pandey, P. P.; Singh, H.; Jain, S.

10.1101/487504 — systems biology — Posted on 2018-12-04

2334 Synthetic Biology Research and Innovation Profile 2018: Publications and Patents

Shapira, P.; Kwon, S.

10.1101/485805 — scientific communication and education — Posted on 2018-12-04

2335 High-definition transcranial direct current stimulation over the dorsal premotor cortex reliably modulates motor network excitability

Lefebvre, S.; Jann, K.; Schmiesing, A.; Ito, K.; Jog, M.; Qiao, Y.; Cabeen, R.; Shi, Y.; Schweighofer, N.; Wang, D. J.; Liew, S.-L.

10.1101/487488 — neuroscience — Posted on 2018-12-04

2336 Ezh2-dependent epigenetic reprogramming controls a developmental switch between modes of gastric neuromuscular regulation

Syed, S.; Hayashi, Y.; Lee, J.-H.; Yan, H.; Lorincz, A.; Strege, P. R.; Gajdos, G. B.; Milosavljevic, S.; Nie, J.; Rumessen, J. J.; Gibbons, S. J.; Horvath, V. J.; Bardsley, M. R.; Redelman, D. D.; Klein, S.; Saur, D.; Farrugia, G.; Zhang, Z.; Urrutia, R.; Ordog, T.

10.1101/486423 — molecular biology — Posted on 2018-12-04

2337 Horizontal gene transfer as an indispensible driver for Neocallimastigomycota evolution into a distinct gut-dwelling fungal lineage

Murphy, C.; Youssef, N.; Hanafy, R. A.; Couger, M.; Stajich, J. E.; Wang, Y.; Baker, K.; Dagar, S.; Griffith, G.; Farag, I.; Callaghan, T.; Elshahed, M. S.

10.1101/487215 — microbiology — Posted on 2018-12-04

2338 Diversity Converges During Community Assembly In Methanogenic Granules, Suggesting A Biofilm Life-Cycle

Trego, A. C.; Morabito, C.; Bourven, I.; Guibaud, G.; Mills, S.; Connelly, S.; Quince, C.; Ijaz, U. Z.; Collins, G.

10.1101/484642 — microbiology — Posted on 2018-12-04

2339 Assessment of Environmental and Occupational Exposure while Working with Candida auris a Multidrug Resistant (MDR) Fungus in the Animal Facility.

Torres, S. R.; Kim, H. C.; Leach, L.; Chaturvedi, S.; Bennett, C. J.; Hill, D. J.; De Jesus, M.

10.1101/486100 — microbiology — Posted on 2018-12-04

2340 Alternative hydrogen uptake pathways suppress methane production in ruminants

Greening, C.; Geier, R.; Wang, C.; Woods, L. C.; Morales, S. E.; McDonald, M. J.; Rushton-Green, R.; Morgan, X. C.; Koike, S.; Leahy, S. C.; Kelly, W. J.; Cann, I.; Attwood, G. T.; Cook, G. M.; Mackie, R. I.

10.1101/486894 — microbiology — Posted on 2018-12-04

2341 Gut microbiome communication with bone marrow regulates susceptibility to amebiasis

Burgess, S. L.; Leslie, J. L.; Uddin, M. J.; Oakland, N.; Watanabe, K.; Gilchrist, C.; Saleh, M.; Simpson, M.; Turner, S.; Giallourou, N.; Swann, J.; Haque, R.; Petri, W. A.

10.1101/487652 — microbiology — Posted on 2018-12-04

2342 RNase L reprograms translation by widespread mRNA turnover escaped by antiviral mRNAs

Burke, J. M.; Moon, S. L.; Lester, E. T.; Matheny, T.; Parker, R.

10.1101/486530 — immunology — Posted on 2018-12-04

2343 Why Put-Up with Immunity when there is Resistance: An Excursion into the Population and Evolutionary Dynamics of Restriction-Modification and CRISPR-Cas

Gurney, J. R.; Pleska, M.; Levin, B. R.

10.1101/487132 — evolutionary biology — Posted on 2018-12-04

2344 Natural selection contributed to immunological differences between human hunter-gatherers and agriculturalists

Harrison, G. F.; Sanz, J.; Boulais, J.; Mina, M. J.; Grenier, J.-C.; Leng, Y.; Dumaine, A.; Yotova, V.; Bergey, C. M.; Elledge, S. J.; Schurr, E.; Quintana-Murci, L.; Perry, G. H.; Barreiro, L. B.

10.1101/487207 — evolutionary biology — Posted on 2018-12-04

2345 Theory of mechano-chemical patterning in biphasic biological tissues

Recho, P.; Hallou, A.; Hannezo, E.

10.1101/484345 — biophysics — Posted on 2018-12-04

2346 Engineering a decoy substrate in soybean to enable recognition of the Soybean Mosaic Virus NIa protease

Helm, M.; Qi, M.; Sarkar, S.; Yu, H.; Whitham, S. A.; Innes, R. W.

10.1101/484626 — plant biology — Posted on 2018-12-04

2347 Attenuation of Aβ-associated hyperactivity reduces Aβ and tau pathology along the entorhinal cortex-hippocampal network

Rodriguez, G. A.; Barrett, G. M.; Duff, K. E.; Hussaini, A.

10.1101/487405 — neuroscience — Posted on 2018-12-04

2348 Rousing Persisters through Ribosome Resuscitation and Rescue

Yamasaki, R.; Song, S.; Benedik, M.; Wood, T. K.

10.1101/486985 — microbiology — Posted on 2018-12-04

2349 SapM mutation to improve the BCG vaccine: genomic, transcriptomic and preclinical safety characterization

Festjens, N.; Vandewalle, K.; Houthuys, E.; Plets, E.; Vanderschaeghe, D.; Borgers, K.; Van Hecke, A.; Tiels, P.; Callewaert, N.

10.1101/486993 — microbiology — Posted on 2018-12-04

2350 Genome-wide association study of anti-Mullerian hormone levels in pre-menopausal women of late reproductive age and relationship with genetic determinants of reproductive lifespan

Ruth, K. S.; Soares, A. L. G.; Borges, M.-C.; Eliassen, A. H.; Hankinson, S. E.; Jones, M. E.; Kraft, P.; Nichols, H. B.; Sandler, D. P.; Schoemaker, M. J.; Taylor, J. A.; Zeleniuch-Jacquotte, A.; Lawlor, D. A.; Swerdlow, A. J.; Murray, A.

10.1101/487181 — genomics — Posted on 2018-12-04

2351 Genetic variation within genes associated with mitochondrial function is significantly associated with later age at onset of Parkinson disease and contributes to disease risk

Billingsley, K.; Barbosa, I. A.; Bandres-Ciga, S.; Quinn, J. P.; Bubb, V. J.; Deshpande, C.; Botia, J. A.; Reynolds, R. H.; Zhang, D.; Simpson, M. A.; Blauwendraat, C.; Gibbs, J. R.; Nalls, M. A.; Singleton, A. B.; International Parkinsons Disease Genomics Consortium IPDGC, ; Ryten, M.; Koks, S.

10.1101/475111 — genetics — Posted on 2018-12-04

2352 Dysregulation of NRAP degradation by KLHL41 contributes to pathophysiology in Nemaline Myopathy

Jirka, C.; Pak, J. H.; Grosgogeat, C. A.; Marchetti, M. M.; Gupta, V. A.

10.1101/487454 — genetics — Posted on 2018-12-04

2353 Regional connectivity, local environmental conditions, and biotic interactions jointly structure a temperate seagrass epifaunal metacommunity

Stark, K. A.; Thompson, P. L.; Yakimishyn, J.; Lee, L.; O'Connor, M. I.

10.1101/482406 — ecology — Posted on 2018-12-04

2354 Arkadia degrades SNON to activate level-specific NODAL responses

Carthy, J. M.; Ioannou, M.; Episkopou, V.

10.1101/487371 — developmental biology — Posted on 2018-12-04

2355 Synaptic plasticity onto inhibitory neurons as a mechanism for ocular dominance plasticity.

Bono, J.; Clopath, C.

10.1101/280511 — neuroscience — Posted on 2018-12-04

2356 Lgr5+ stem/progenitor cells reside at the apex of the embryonic hepatoblast pool

Prior, N.; Hindley, C. J.; Rost, F.; Melendez Esteban, E.; Lau, W. W. Y.; Gottgens, B.; Rulands, S.; Simons, B. D.; Huch, M.

10.1101/485870 — developmental biology — Posted on 2018-12-04

2357 Volumetric reconstruction of main Caenorhabditis elegans neuropil at two different time points

Brittin, C. A.; Cook, S. J.; Hall, D. H.; Emmons, S. W.; Cohen, N.

10.1101/485771 — developmental biology — Posted on 2018-12-04

2358 Conserved tau microtubule-binding repeat histidines confer pH-dependent tau-microtubule association

Charafeddine, R. A.; Cortopassi, W. A.; Lak, P.; Jacobson, M. P.; Barber, D. L.; Wittmann, T.

10.1101/486688 — cell biology — Posted on 2018-12-04

2359 A refutation to ‘A new A-P compartment boundary and organizer in holometabolous insect wings.’

Lawrence, P. A.; Casal, J.; de Celis, J. F.; Morata, G.

10.1101/486951 — developmental biology — Posted on 2018-12-04

2360 Super-resolution Molecular Map of Basal Foot Reveals Novel Cilium in Airway Multiciliated Cells

Nguyen, Q.; Liu, Z.; Nanjundappa, R.; Megherbi, A.; Delgehyr, N.; Ouyang, H.; Zock, L.; Coyaud, E.; Laurent, E.; Dell, S.; Finkbeiner, W.; Moraes, T.; Raught, B.; Czymmek, K.; Munier, A.; Mahjoub, M. R.; Mennella, V.

10.1101/487330 — cell biology — Posted on 2018-12-04

2361 Concerted 2-5A-Mediated mRNA Decay and Transcription Reprogram Protein Synthesis in dsRNA Response

Rath, S.; Prangley, E.; Donovan, J.; Demarest, K.; Meir, Y.; Wingreen, N.; Korennykh, A.

10.1101/484675 — cell biology — Posted on 2018-12-04

2362 Extensive field-sampling reveals the uniqueness of a trophy mountain goat population

Breen, J.; Britt, M.; Johnson, J. B.; Martchenko, D.; Shakeri, Y.; Porter, B.; White, K. S.; Shafer, A.

10.1101/484592 — genetics — Posted on 2018-12-04

2363 A gene expression atlas of embryonic neurogenesis in Drosophila reveals complex spatiotemporal regulation of lncRNAs.

McCorkindale, A. L.; Wahle, P.; Werner, S.; Jungreis, I.; Menzel, P.; Shukla, C. J.; Lopes Pereira Abreu, R.; Irizarry, R.; Meyer, I.; Kellis, M.; Zinzen, R. P.

10.1101/483461 — developmental biology — Posted on 2018-12-04

2364 High-throughput functional analysis of lncRNA core promoters elucidates rules governing tissue-specificity

Mattioli, K.; Volders, P.-J.; Gerhardinger, C.; Lee, J. C.; Maass, P. G.; Mele, M.; Rinn, J. L.

10.1101/482232 — genomics — Posted on 2018-12-04

2365 Galectin-3, A Novel Endogenous Trem2 Ligand, Regulates Inflammatory Response and Aβ Fibrilation in Alzheimer’s Disease

Boza Serrano, A.; Ruiz, R.; Sanchez Varo, R.; Yang, Y.; Garcia-Revilla, J.; Paulus, A.; Jimenez Ferrer, I.; The Netherland Brain, ; Wennstrom, M.; Vilalta, A.; Dunning, C.; Davila, J. C.; Allendorf, D.; Swanberg, M.; Stegmayr, J.; Jimenez, S.; Roca-Ceballos, M. A.; Navarro-Garrido, V.; L. Hsieh, C.; Miguel-Real, L.; Englund, E.; Linse, S.; Leffler, H.; J. Nilsson, U.; Gutierrez, A.; Brown, G. C.; Vitorica, J.; Venero, J. L.; Deierborg, T.

10.1101/477927 — neuroscience — Posted on 2018-12-04

2366 Temperature-Jump Solution X-ray Scattering Reveals Distinct Motions in a Dynamic Enzyme

Thompson, M. C.; Barad, B. A.; Wolff, A. M.; Cho, H. S.; Schotte, F.; Schwarz, D. M. C.; Anfinrud, P.; Fraser, J. S.

10.1101/476432 — biophysics — Posted on 2018-12-04

2367 β-cyclocitric acid: a new apocarotenoid eliciting drought tolerance in plants

D'Alessandro, S.; Mizokami, Y.; Legeret, B.; Havaux, M.

10.1101/478560 — plant biology — Posted on 2018-12-04

2368 Oral thermosensing by murine trigeminal neurons:modulation by capsaicin, menthol, and mustard oil

Leijon, S. C. M.; Neves, A. F.; Simon, S. A.; Chaudhari, N.; Roper, S.

10.1101/486480 — neuroscience — Posted on 2018-12-04

2369 Movement imitation via an abstract trajectory representation in dorsal premotor cortex

Wong, A. L.; Jax, S. A.; Smith, L. L.; Buxbaum, L. J.; Krakauer, J. W.

10.1101/294207 — neuroscience — Posted on 2018-12-04

2370 Cortico-genetic mapping links individual brain maturity in youths to cognitive and psychiatric traits

Kaufmann, T.; van der Meer, D.; Alnaes, D.; Frei, O.; Smeland, O. B.; Andreassen, O. A.; Westlye, L. T.

10.1101/487173 — neuroscience — Posted on 2018-12-04

2371 Myeloid cell and transcriptome signatures associated with inflammation resolution in a model of self-limiting acute brain inflammation

Davies, C. L.; Patir, A.; McColl, B. W.

10.1101/486589 — neuroscience — Posted on 2018-12-04

2372 cGAS is predominantly a nuclear protein

Volkman, H. E.; Cambier, S.; Gray, E. E.; Stetson, D. B.

10.1101/486118 — immunology — Posted on 2018-12-04

2373 Graphene Oxide as 2D Platform for Complexation and Intracellular Delivery of siRNA

de Lazaro, I.; Vranic, S.; Marson, D.; Rodrigues, A. F.; Buggio, M.; Esteban-Arranz, A.; Mazza, M.; Posocco, P.; Kostarelos, K.

10.1101/486522 — bioengineering — Posted on 2018-12-04

2374 Biomass segregation between biofilm and flocs improves the control of nitrite-oxidizing bacteria in mainstream partial nitritation and anammox processes

Laureni, M.; Weissbrodt, D. G.; Villez, K.; Robin, O.; de Jonge, N.; Rosenthal, A.; Wells, G.; Nielsen, J. L.; Morgenroth, E.; Joss, A.

10.1101/480780 — systems biology — Posted on 2018-12-04

2375 A tool for computation of changes in Na+, K+, Cl- channels and transporters due to apoptosis by data on cell ion and water content alteration

Yurinskaya, V. E.; Vereninov, I. A.; Vereninov, A. A.

10.1101/486811 — physiology — Posted on 2018-12-04

2376 A pharmacokinetic-pharmacodynamic assessment of the hepatic and bone-marrow toxicities of the new trypanoside fexinidazole

Watson, J. A.; Strub-Wourgraft, N.; Tarral, A.; Ribeiro, I.; Tarning, J.; White, N. J.

10.1101/486761 — pharmacology and toxicology — Posted on 2018-12-04

2377 A comparison of gene expression and DNA methylation patterns across tissues and species

Blake, L. E.; Roux, J.; Hernando-Herraez, I.; Banovich, N. E.; Garcia Perez, R.; Hsiao, C. J.; Eres, I.; Chavarria, C.; Marques-Bonet, T.; Gilad, Y.

10.1101/487413 — genomics — Posted on 2018-12-04

2378 Extreme genetic signatures of local adaptation during plant colonization

10.1101/485789 — evolutionary biology — Posted on 2018-12-04

2379 Strong gene activation with genome-wide specificity using a new orthogonal CRISPR/Cas9-based Programmable Transcriptional Activator.

Selma, S.; Bernabe-Orts, J.; Vazquez-Vilar, M.; Diego, B.; Ajenjo, M.; Garcia-Carpintero, V.; Granell, A.; Orzaez, D.

10.1101/486068 — synthetic biology — Posted on 2018-12-04

2380 Expanding the toolbox of broad host-range transcriptional terminators for Proteobacteria through metagenomics

Amarelle, V.; Sanches-Medeiros, A.; Silva-Rocha, R.; Guazzaroni, M.-E.

10.1101/485938 — synthetic biology — Posted on 2018-12-04

2381 Mesenchymal stromal cells release CXCL1/2/8 and induce chemoresistance and macrophage polarization

Couderc, B.; Le Naour, A.; Prat, M.; Mevel, R.; Thibault, B.; Lemaitre, L.; Leray, H.; Golzio, M.; Lefevre, L.; Mery, E.; Martinez, A.; Ferron, G.; Delord, J.-P.; Coste, A.

10.1101/482513 — cancer biology — Posted on 2018-12-04

2382 Evolutionary history of phycoerythrin pigmentation in the water bloom-forming cyanobacterium Microcystis aeruginosa

Tanabe, Y.; Yamaguchi, H.

10.1101/485508 — microbiology — Posted on 2018-12-04

2383 Pathogenic Budding Yeasts Isolated outside of Clinical Settings

Opulente, D.; Langdon, Q.; Buh, K.; Haase, M.; Sylvester, K.; Moriarty, R. V.; Jarzyna, M.; Considine, S.; Schneider, R.; Hittinger, C. T.

10.1101/480251 — microbiology — Posted on 2018-12-04

2384 Enrichment of short mutant cell-free DNA fragments enhanced detection of pancreatic cancer

Liu, X.; Liu, L.; Ji, Y.; Li, C.; Wei, T.; Yang, X.; Zhang, Y.; Cai, X.; Yang, T.; Gao, Y.; Xu, W.; Rao, S.; Jin, D.; Lou, W.; Qiu, Z.; Wang, X.

10.1101/482745 — cancer biology — Posted on 2018-12-04

2385 The shape of density dependence and the relationship between population growth, intraspecific competition and equilibrium population density

Fronhofer, E. A.; Govaert, L.; O'Connor, M. I.; Schreiber, S. J.; Altermatt, F.

10.1101/485946 — ecology — Posted on 2018-12-04

2386 Dye-free retinal angiography using blood-oxygenation modulation

MacKenzie, L. E.; Choudhary, T. R.; Fernandez Ramos, J.; Benjamin, N.; Delles, C.; Harvey, A. R.

10.1101/485839 — biophysics — Posted on 2018-12-04

2387 Hydrodynamic and electrophoretic properties of Trastuzumab/HER2 complexes. Experiments and modeling.

Ramos, J.; Vega, J. F.; Cruz, V.; Sanchez-Sanchez, E.; Cortes, J.; Martinez-Salazar, J.

10.1101/483081 — biophysics — Posted on 2018-12-04

2388 Assembly and early maturation of large subunit precursors

Chaker-Margot, M.; Klinge, S.

10.1101/486225 — biochemistry — Posted on 2018-12-04

2389 Antiviral Functions of ARGONAUTE Proteins During Turnip Crinkle Virus Infection Revealed by Image-based Trait Analysis in Arabidopsis

Zheng, X.; Carrington, J. C.; Fahlgren, N.; Abbasi, A.; Berry, J. C.

10.1101/487322 — plant biology — Posted on 2018-12-04

2390 Counterconditioning following memory retrieval diminishes reinstatement of appetitive memories in humans

Gera, R.; Barak, S.; Schonberg, T.

10.1101/376392 — neuroscience — Posted on 2018-12-04

2391 Endocytosis caused by liquid-liquid phase separation of proteins

Bergeron-Sandoval, L.-P.; Heris, H. K.; Chang, C.; Cornell, C. E.; Keller, S. L.; Hendricks, A. G.; Ehrlicher, A. J.; Francois, P.; Pappu, R. V.; Michnick, S. W.

10.1101/145664 — cell biology — Posted on 2018-12-04

2392 Ultra-deep, long-read nanopore sequencing of mock microbial community standards

Nicholls, S. M.; Quick, J. C.; Tang, S.; Loman, N. J.

10.1101/487033 — bioinformatics — Posted on 2018-12-04

2393 The draft genome of an octocoral, Dendronephthya gigantea

Jeon, Y.; Park, S. G.; Lee, N.; Weber, J. A.; Kim, H.-S.; Hwang, S.-J.; Woo, S.; Kim, H.-m.; Bhak, Y.; Jeon, S.; Lee, N.; Jo, Y.; Blazyte, A.; Ryu, T.; Cho, Y. S.; Kim, H.; Lee, J.-H.; Yim, H.-S.; Bhak, J.; Yum, S.

10.1101/487058 — genomics — Posted on 2018-12-04

2394 Genome-wide analysis of drug resistant Mycobacterium tuberculosis isolates causing pulmonary and extrapulmonary tuberculosis in Russia

Chernyaeva, E. N.; Rotkevich, M.; Krasheninnikova, K.; Lapidus, A.; Polev, D. E.; Solovieva, N.; Zhuravlev, V.; Yablonsky, P.; O'Brien, S. J.

10.1101/486746 — genomics — Posted on 2018-12-04

2395 Thyroid cancer incidence and mortality in Latin America

de Morais Fernandes, F. C. G.; de Souza, D. L. B.; Curado, M. P.; Barbosa, I. R.

10.1101/487249 — epidemiology — Posted on 2018-12-04

2396 Hyaluronidase: the spreading factor of Tityus serrulatus venom

Oliveira-Mendes, B. B. R. d.; Miranda, S. E. M.; Sales-Medina, D. F.; Magalhaes, B. d. F.; Kalapothakis, Y.; Souza, R. P. d.; Cardoso, V. N.; de Barros, A. L. B.; Guerra-Duarte, C.; Kalapothakis, E.; Horta, C. C. R.

10.1101/487298 — pharmacology and toxicology — Posted on 2018-12-04

2397 The skull of StW 573, a 3.67 Ma Australopithecus skeleton from Sterkfontein Caves, South Africa

Clarke, R. J.; Kuman, K.

10.1101/483495 — paleontology — Posted on 2018-12-04

2398 Identification of the m6Am methyltransferase PCIF1 reveals the location and functions of m6Am in the transcriptome

Boulias, K.; Toczydlowska-Socha, D.; Hawley, B. R.; Liberman-Isakov, N.; Takashima, K.; Zaccara, S.; Guez, T.; Vasseur, J.-J.; Debart, F.; Aravind, L.; Jaffrey, S. R.; Greer, E. L.

10.1101/485862 — molecular biology — Posted on 2018-12-04

2399 Novel cytokine interactions identified during perturbed hematopoiesis

Krieger, M. S.; Moreau, J. M.; Zhang, H.; Chien, M.; Zehnder, J. L.; Nowak, M. A.; Craig, M.

10.1101/484170 — immunology — Posted on 2018-12-04

2400 Dispersal syndromes can impact ecosystem functioning in spatially structured freshwater populations

Little, C. J.; Fronhofer, E. A.; Altermatt, F.

10.1101/485706 — ecology — Posted on 2018-12-04

2401 The kinetochore protein Spc105, a novel interaction partner of LaeA, regulates development and secondary metabolism in Aspergillus flavus

Zhi, Q.; He, L.; Li, J.; Li, J.; Wang, Z.; He, G.; He, Z.

10.1101/487280 — microbiology — Posted on 2018-12-04

2402 Trogocytosis by Entamoeba histolytica mediates acquisition and display of human cell membrane proteins and evasion of lysis by human serum

Miller, H. W.; Suleiman, R. L.; Ralston, K. S.

10.1101/487314 — microbiology — Posted on 2018-12-04

2403 Discovery of cancer driver genes based on nucleotide context

Dietlein, F.; Weghorn, D.; Taylor-Weiner, A.; Richters, A.; Reardon, B.; Liu, D.; Lander, E. S.; Van Allen, E. M.; Sunyaev, S. R.

10.1101/485292 — genetics — Posted on 2018-12-04

2404 Nifedipine Modulated Renal Lipogenesis via AMPK-SREBP Transcriptional Pathways

Lin, Y.-C.; Wu, M.-S.; Chen, C.-R.; Chen, C.-Y.; Chen, C.-J.; Chen, K.-C.; Peng, C.-C.

10.1101/487264 — biochemistry — Posted on 2018-12-04

2405 Plant-Necrotroph Co-transcriptome Networks Illuminate a Metabolic Battlefield

Zhang, W.; Corwin, J. A.; Copeland, D.; Feusier, J.; Eshbaugh, R.; Cook, D. E.; Atwell, S.; Kliebenstein, D. J.

10.1101/485235 — systems biology — Posted on 2018-12-04

2406 Identifying task-relevant spectral signatures of perceptual categorization in the human cortex

Kuzovkin, I.; Vidal, J. R.; Perrone-Bertlotti, M.; Kahane, P.; Rheims, S.; Aru, J.; Lachaux, J.-P.; Vicente, R.

10.1101/483487 — neuroscience — Posted on 2018-12-04

2407 A universal set of primers to study animal associated microeukaryotic communities

del Campo, J.; Pons, M. J.; Herranz, M.; Wakeman, K. C.; del Valle, J.; Vermeij, M. J.; Keeling, P. J.

10.1101/485532 — microbiology — Posted on 2018-12-04

2408 Geographic variation and bias in polygenic scores of complex diseases and traits in Finland

Kerminen, S.; Martin, A. R.; Koskela, J.; Ruotsalainen, S. E.; Havulinna, A. S.; Surakka, I.; Palotie, A.; Perola, M.; Salomaa, V.; Daly, M. J.; Ripatti, S.; Pirinen, M.

10.1101/485441 — genetics — Posted on 2018-12-04

2409 Structural basis for ion selectivity in TMEM175 K+ channels

Brunner, J. D.; Jakob, R. P.; Schulze, T.; Neldner, Y.; Moroni, A.; Thiel, G.; Maier, T.; Schenck, S.

10.1101/480863 — biochemistry — Posted on 2018-12-04

2410 Effects of male age and female presence on male associations in a large, polygynous mammal in southern India

Keerthipriya, P.; Nandini, S.; Vidya, T. N. C.

10.1101/485144 — animal behavior and cognition — Posted on 2018-12-04

2411 Metabolic Control Analysis of Exponential Growth and Product Formation

Fell, D. A.

10.1101/485680 — systems biology — Posted on 2018-12-04

2412 Shallow MinION sequencing to assist de novo assembly of the Streptococcus agalactiae genome

Hernandez-Beeftink, T.; Rodriguez-Perez, H.; Diaz-de Usera, A.; Gonzalez-Montelongo, R.; Lorenzo-Salazar, J. M.; Lorenzo-Diaz, F.; Flores, C.

10.1101/485029 — genomics — Posted on 2018-12-04

2413 Comparative genomics reveals contraction in cytosolic glutathione transferase genes in cetaceans: implications for oxidative stress adaptation

Tian, R.; Seim, I.; Ren, W.; Xu, S.; Yang, G.

10.1101/485615 — evolutionary biology — Posted on 2018-12-04

2414 Regional connectivity, local environmental conditions, and biotic interactions jointly structure a temperate seagrass epifaunal metacommunity

Stark, K. A.; Thompson, P. L.; Yakimishyn, J.; Lee, L.; O'Connor, M. I.

10.1101/482406 — ecology — Posted on 2018-12-04

2415 Somatic uniparental disomy with a rare EFL1 variant causes Shwachman-Diamond syndrome through dysregulating ribosomal protein synthesis

Lee, S.; Shin, C. H.; Hong, C. R.; Kim, J.-D.; Kim, A.-R.; Lee, J.; Kokhan, O.; Yoo, T.; Sohn, Y. B.; Kim, O.-H.; Ko, J. M.; Cho, T.-J.; Wright, N. T.; Jin, S.-W.; Kang, H. J.; Kim, H. H.; Choi, M.

10.1101/483362 — genetics — Posted on 2018-12-04

2416 CMT disease 2A and demyelination decouple ATP and ROS production by axonal mitochondria

Van Hameren, G.; Campbell, G.; Deck, M.; Berthelot, J.; Chrast, R.; Tricaud, N.

10.1101/462523 — neuroscience — Posted on 2018-12-04

2417 Evolution of the HIV-1 RRE during natural infection reveals key nucleotide changes that correlate with altered structure and increased activity over time

Sherpa, C.; Jackson, P.; Gray, L. R.; Anastos, K.; Le Grice, S. F. J.; Hammarskjold, M.-L.; Rekosh, D.

10.1101/483511 — molecular biology — Posted on 2018-12-04

2418 3D Chromatin Architecture Remodeling during Human Cardiomyocyte Differentiation Reveals A Novel Role of HERV-H In Demarcating Chromatin Domains

Zhang, Y.; Li, T.; Preissl, S.; Grinstein, J.; Farah, E.; Destici, E.; Lee, A. Y.; Chee, S.; Qiu, Y.; Ma, K.; Ye, Z.; Zhu, Q.; Huang, H.; Hu, R.; Fang, R.; Evans, S.; Chi, N.; Ren, B.

10.1101/485961 — genomics — Posted on 2018-12-04

2419 Machine learning models to predict in vivo drug response via optimal dimensionality reduction of tumour molecular profiles

Nguyen, L.; Naulaerts, S.; Bomane, A.; Bruna, A.; Ghislat, G.; Ballester, P.

10.1101/277772 — bioinformatics — Posted on 2018-12-04

2420 Cas4 nucleases can effect specific integration of CRISPR spacers

Zhang, Z.; Pan, S.; Liu, T.; Li, Y.; Peng, N.

10.1101/486738 — molecular biology — Posted on 2018-12-04

2421 Metagenomic profiling of ticks: identification of novel rickettsial genomes and detection of tick-borne canine parvovirus

Ravi, A.; Ereqat, S.; Al-Jawabreh, A.; Abdeen, Z.; Abu Shamma, O.; Hall, H.; Nasereddin, A.; PALLEN, M. J.

10.1101/407510 — microbiology — Posted on 2018-12-04

2422 Meiotic Drive and the Survival Probability of Newly Inverted Chromosomes

Koury, S. A.

10.1101/486712 — evolutionary biology — Posted on 2018-12-04

2423 Transmission trees on a known pathogen phylogeny: enumeration and sampling

Hall, M.; Colijn, C.

10.1101/160812 — evolutionary biology — Posted on 2018-12-04

2424 Leaps and bounds: geographical and ecological distance constrained the colonisation of the Afrotemperate by Erica

Pirie, M. D.; Kandziora, M.; Nuerk, N. M.; Le Maitre, N. C.; Mugrabi de Kuppler, A. L.; Gehrke, B.; Oliver, E. G. H.; Bellstedt, D. U.

10.1101/290791 — evolutionary biology — Posted on 2018-12-04

2425 pdb-tools: a swiss army knife for molecular structures

Rodrigues, J. P. G. L. M.; Teixeira, J. M. C.; Trellet, M.; Bonvin, A. M. J. J.

10.1101/483305 — bioinformatics — Posted on 2018-12-04

2426 A Critical Appraisal of Predatory Journals in Pathology

AlAhmad, Y. M.; Abdelhafez, I.; Cyprian, F. S.; Skenderi, F.; Akhtar, S.; Vranic, S.

10.1101/482174 — scientific communication and education — Posted on 2018-12-04

2427 Does protein A mirror image exist in solution? Outline of an experimental design aimed to detect it

Martin, O. A.; Vorobjev, Y.; Scheraga, H. A.; Vila, J. A.

10.1101/486514 — biophysics — Posted on 2018-12-04

2428 Talent Identification at the limits of Peer Review: an analysis of the EMBO Postdoctoral Fellowships Selection Process

Klaus, B.; del Alamo, D.

10.1101/481655 — scientific communication and education — Posted on 2018-12-04

2429 Recycling of single-stranded DNA-binding protein by the bacterial replisome.

Spenkelink, L. M.; Lewis, J. S.; Jergic, S.; Xu, Z.-Q.; Robinson, A.; Dixon, N. E.; van Oijen, A. M.

10.1101/486555 — biophysics — Posted on 2018-12-04

2430 Hierarchical stem cell topography splits growth and homeostatic functions in the fish gill

Stolper, J.; Ambrosio, E. M.; Danciu, D.-P.; Elliott, D.; Naruse, K.; Marciniak-Czochra, A.; Centanin, L.

10.1101/484139 — developmental biology — Posted on 2018-12-04

2431 Brain network dynamics during spontaneous strategy shifts and incremental task optimization

Allegra, M.; Seyed Allaei, S.; Schuck, N. W.; Amati, D.; Laio, A.; Reverberi, C.

10.1101/481838 — neuroscience — Posted on 2018-12-04

2432 Topological Reinforcement as a Principle of Modularity Emergence in Brain Networks

Damicelli, F.; Hilgetag, C. C.; Hütt, M.-T.; Messe, A.

10.1101/408278 — neuroscience — Posted on 2018-12-04

2433 Towards best-practice approaches for CRISPR/Cas9 gene engineering

Van Campenhout, C.; Cabochette, P.; Veillard, A.-C.; Laczik, M.; Zelisko-Schmidt, A.; Sabatel, C.; Dhainaut, M.; Vanhollebeke, B.; Gueydan, C.; Kruys, V.

10.1101/469544 — molecular biology — Posted on 2018-12-04

2434 Identifiability in connectome based neural mass models

Xie, X.; Kuceyeski, A.; Shah, S. A.; Schiff, N. D.; Nagarajan, S.; Raj, A.

10.1101/480012 — neuroscience — Posted on 2018-12-04

2435 Ancient Yersinia pestis genomes from across Western Europe reveal early diversification during the First Pandemic (541-750)

Keller, M.; Spyrou, M. A.; Scheib, C. L.; Kröpelin, A.; Haas-Gebhard, B.; Päffgen, B.; Haberstroh, J.; Ribera i Lacomba, A.; Raynaud, C.; Cessford, C.; Stadler, P.; Nägele, K.; Neumann, G. U.; Bates, J. S.; Trautmann, B.; Inskip, S.; Peters, J.; Robb, J. E.; Kivisild, T.; McCormick, M.; Bos, K. I.; Harbeck, M.; Herbig, A.; Krause, J.

10.1101/481226 — evolutionary biology — Posted on 2018-12-04

2436 Fluctuating pathogen-mediated selection drives the maintenance of innate immune gene polymorphism in a widespread wild ungulate

Quemere, E.; Hessenauer, P.; Galan, M.; Fernandez, M.; Merlet, J.; Chaval, Y.; Hewison, A. J. M.; Morellet, N.; Verheyden, H.; Gilot Fromont, E.; Charbonnel, N.

10.1101/458216 — evolutionary biology — Posted on 2018-12-04

2437 A well-controlled BioID design for endogenous bait proteins

Vandemoortele, G.; De Sutter, D.; Moliere, A.; Pauwels, J.; Gevaert, K.; Eyckerman, S.

10.1101/427807 — biochemistry — Posted on 2018-12-04

2438 Alteration of the social and spatial organization of the vector of Chagas disease, Triatoma infestans, by the parasite Trypanosoma cruzi

Depickere, S.; Ramirez-Avila, G. M.; jean-Louis, D.

10.1101/383620 — animal behavior and cognition — Posted on 2018-12-04

2439 The STROBE: a system for closed-looped optogenetic control of freely feeding flies

Musso, P.-Y.; Junca, P.; Jelen, M.; Feldman-Kiss, D.; Zhang, H.; Chan, R. C. W.; Gordon, M. D.

10.1101/486050 — neuroscience — Posted on 2018-12-04

2440 PCIF1 catalyzes m6Am mRNA methylation to regulate gene expression

Sendinc, E.; Valle-Garcia, D.; Dhall, A.; Chen, H.; Henriques, T.; Sheng, W.; Adelman, K.; Shi, Y.

10.1101/484931 — molecular biology — Posted on 2018-12-04

2441 Laniakea: an open solution to provide Galaxy \"on-demand\" instances over heterogeneous cloud infrastructures.

Tangaro, M. A.; Donvito, G.; Antonacci, M.; Chiara, M.; Mandreoli, P.; Pesole, G.; Zambelli, F.

10.1101/472464 — bioinformatics — Posted on 2018-12-04

2442 Molecular Nearest Neighbors Determine Generalization of Odorant Mixtures

Brackney, R. J.; Dai, K.; Der-Ghazarian, T.; Smith, B. H.; Gerkin, R. C.

10.1101/427401 — neuroscience — Posted on 2018-12-04

2443 UNC-16/JIP3 inhibits the function of the regeneration promoting isoform of DLK-1

Kulkarni, S. S.; Sheoran, S.; Matsumoto, K.; Hisamoto, N.; Koushika, S. P.

10.1101/484683 — neuroscience — Posted on 2018-12-04

2444 A subfunctionalization epistasis model to evaluate homeologous gene interactions in allopolyploid wheat

Santantonio, N.; Jannink, J.-L.; Sorrells, M.

10.1101/376731 — genetics — Posted on 2018-12-04

2445 Force inference predicts local and tissue-scale stress patterns in epithelia

Kong, W.; Loison, O.; Chavadimane Shivakumar, P.; Collinet, C.; Lenne, P.-F.; Clement, R.

10.1101/475012 — biophysics — Posted on 2018-12-04

2446 Signatures of cell death and proliferation in perturbation transcriptomics data - from confounding factor to effective prediction

Szalai, B.; Subramanian, V.; Alfoldi, R.; Puskas, L. G.; Saez-Rodriguez, J.

10.1101/454348 — systems biology — Posted on 2018-12-04

2447 Signatures and mechanisms of low-dimensional neural predictive manifolds

Recanatesi, S.; Farrell, M.; Lajoie, G.; Deneve, S.; Rigotti, M.; Shea-Brown, E.

10.1101/471987 — neuroscience — Posted on 2018-12-04

2448 Integrated Stress Response Deregulation underlies Vanishing White Matter and is a target for therapy

Abbink, T. E. M.; Wisse, L. E.; Jaku, E.; Thiecke, M. J.; Voltolini-Gonzalez, D.; Fritsen, H.; Bobeldijk, S.; ter Braak, T. J.; Polder, E.; Postma, N. L.; Bugiani, M.; Struys, E. A.; Verheijen, M.; Straat, N.; van der Sluis, S.; Thomas, A. A. M.; Molenaar, D.; van der Knaap, M. S.

10.1101/460840 — neuroscience — Posted on 2018-12-04

2449 Genomic architecture and introgression shape a butterfly radiation

Edelman, N. B.; Frandsen, P.; Miyagi, M.; Clavijo, B. J.; Davey, J.; Dikow, R.; Garcia Accinelli, G.; Van Belleghem, S. M.; Patterson, N. J.; Neafsey, D. E.; Challis, R. J.; Kumar, S.; Moreira, G. R. P.; Salazar, C.; Chouteau, M.; Counterman, B.; Papa, R.; Blaxter, M.; Reed, R. D.; Dasmahapatra, K.; Kronforst, M.; Joron, M.; Jiggins, C. D.; McMillan, W. O.; Di-Palma, F.; Blumberg, A. J.; Wakeley, J.; Jaffe, D.; Mallet, J.

10.1101/466292 — evolutionary biology — Posted on 2018-12-04

2450 A Thermodynamic Limit on the Role of Self-Propulsion in Enhanced Enzyme Diffusion

Feng, M.; Gilson, M. K.

10.1101/451682 — biophysics — Posted on 2018-12-04

2451 scPred: scPred: Cell type prediction at single-cell resolution

Alquicira-Hernandez, J.; Nguyen, Q.; Powell, J. E.

10.1101/369538 — genomics — Posted on 2018-12-03

2452 Working-memory disruption by task-irrelevant talkersdepends on degree of talker familiarity

Kreitewolf, J.; Wöstmann, M.; Tune, S.; Plöchl, M.; Obleser, J.

10.1101/372508 — neuroscience — Posted on 2018-12-03

2453 Beyond the SNP threshold: identifying outbreak clusters using inferred transmissions

Stimson, J.; Gardy, J. L.; Mathema, B.; Crudu, V.; Cohen, T.; Colijn, C.

10.1101/319707 — genomics — Posted on 2018-12-03

2454 A behavior-manipulating virus relative as a source of adaptive genes for parasitoid wasps

Di Giovanni, D.; Lepetit, D.; Boulesteix, M.; Ravallec, M.; Varaldi, J.

10.1101/342758 — evolutionary biology — Posted on 2018-12-03

2455 The y-ome defines the thirty-four percent of Escherichia coli genes that lack experimental evidence of function

Ghatak, S.; King, Z. A.; Sastry, A.; Palsson, B. O.

10.1101/328591 — systems biology — Posted on 2018-12-03

2456 Genetic background influences heterogeneity of adaptive response and genome stability during prolonged antifungal drug exposure in Candida albicans

Gerstein, A. C.; Berman, J.

10.1101/360347 — evolutionary biology — Posted on 2018-12-03

2457 Partially redundant actin genes in Chlamydomonas control flagellum-directed traffic and transition zone organization.

Jack, B.; Mueller, D. M.; Fee, A. C.; Tetlow, A.; Avasthi, P.

10.1101/227553 — cell biology — Posted on 2018-12-03

2458 Cerebellar grey matter volume is associated with cognitive function and psychopathology in adolescence

Moberget, T.; Alnaes, D.; Kaufmann, T.; Doan, N. T.; Cordova-Palomera, A.; Norbom, L. B.; Rokicki, J.; van der Meer, D.; Andreassen, O. A.; Westlye, L. T.

10.1101/288134 — neuroscience — Posted on 2018-12-03

2459 Primary Motor Cortex Encodes A Temporal Difference Reinforcement Learning Process

Tarigoppula, V. S. A.; Choi, J. S.; Hessburg, J. H.; McNiel, D. B.; Marsh, B. T.; Francis, J. T.

10.1101/257337 — neuroscience — Posted on 2018-12-03

2460 Genome-wide analysis of consistently RNA edited sites in human blood reveals interactions with mRNA processing genes and suggests correlations with cell types and biological variables.

Giacopuzzi, E.; Gennarelli, M.; Sacco, C.; Filippini, A.; Mingardi, J.; Magri, C.; Barbon, A.

10.1101/254045 — genomics — Posted on 2018-12-03

2461 Comparative Analysis of Linear and Nonlinear Dimension Reduction Techniques on Mass Cytometry Data

Konstorum, A.; Vidal, E.; Jekel, N.; Laubenbacher, R.

10.1101/273862 — bioinformatics — Posted on 2018-12-03

2462 Viral-mediated optogenetic stimulation of peripheral motor nerves in non-human primates

Williams, J.; Watson, A.; Vazquez, A. L.; Schwartz, A. B.

10.1101/261925 — bioengineering — Posted on 2018-12-03

2463 Mitogenomes illuminate the origin and migration patterns of the indigenous people of the Canary Islands

10.1101/486142 — genetics — Posted on 2018-12-03

2464 When rarity has costs: coexistence under positive frequency-dependence and environmental stochasticity

Schreiber, S.; Yamamichi, M.; Strauss, S.

10.1101/161919 — ecology — Posted on 2018-12-03

2465 Does pixel/voxel-size limit the measurement of distances in CBCT-tomography?

Köberle, R.; Spavieri, D. L.; Bianchi, J.; Ignacio, J.; Goncalves, J. R.

10.1101/486167 — bioengineering — Posted on 2018-12-03

2466 The chaperone-client network subordinates cell-cycle entry to growth and stress

Moreno, D. F.; Parisi, E.; Yahya, G.; Vaggi, F.; Csikasz-Nagy, A.; Aldea, M.

10.1101/485714 — molecular biology — Posted on 2018-12-03

2467 Spatial chromosome folding and active transcription drive DNA fragility and formation of oncogenic MLL translocations

Gothe, H. J.; Bouwman, B. A. M.; Gusmao, E. G.; Piccinno, R.; Sayols, S.; Drechsel, O.; Petrosino, G.; Minneker, V.; Josipovic, N.; Mizi, A.; Nielsen, C. F.; Wagner, E.-M.; Takeda, S.; Sasanuma, H.; Hudson, D. F.; Kindler, T.; Baranello, L.; Papantonis, A.; Crosetto, N.; Roukos, V.

10.1101/485763 — cell biology — Posted on 2018-12-03

2468 Identification of new transmembrane proteins concentrated at the nuclear envelope using organellar proteomics of mesenchymal cells

Cheng, L.-C.; Baboo, S.; Lindsay, C.; Brusman, L. E.; Martinez-Bartolome, S.; Tapia, O.; Zhang, X.; Yates, J. R.; Gerace, L.

10.1101/486415 — cell biology — Posted on 2018-12-03

2469 Ykt6 membrane-to-cytosol cycling regulates exosomal Wnt secretion

Linnemannstöns, K.; Karuna M, P.; Witte, L.; Kittel, J. C.; Danieli, A.; Müller, D.; Nitsch, L.; Honemann-Capito, M.; Grawe, F.; Wodarz, A.; Gross, J. C.

10.1101/485565 — cell biology — Posted on 2018-12-03

2470 Regulation of Cilia Abundance in Multiciliated Cells

Nanjundappa, R.; Kong, D.; Shim, K.; Stearns, T.; Brody, S.; Loncarek, J.; Mahjoub, M.

10.1101/478297 — cell biology — Posted on 2018-12-03

2471 Transcranial ultrasound selectively biases decision-making in primates

Kubanek, J.; Brown, J.; Ye, P.; Pauly, K. B.; Moore, T.; Newsome, W.

10.1101/486134 — neuroscience — Posted on 2018-12-03

2472 Vascular physiology drives functional brain networks

Bright, M. G.; Whittaker, J. R.; Driver, I. D.; Murphy, K.

10.1101/475491 — neuroscience — Posted on 2018-12-03

2473 Circuit dysfunction in SOD1-ALS model first detected in sensory feedback prior to motor neuron degeneration is alleviated by BMP signaling

Held, A.; Major, P.; Sahin, A.; Reenan, R.; Lipscombe, D.; Wharton, K.

10.1101/484337 — neuroscience — Posted on 2018-12-03

2474 Dynamical structure of cortical taste responses revealed by precisely-timed optogenetic perturbation

Mukherjee, N.; Wachutka, J.; Katz, D. B.

10.1101/486043 — neuroscience — Posted on 2018-12-03

2475 Dissociated cortical phase- and amplitude-coupling patterns in the human brain

Siems, M.; Siegel, M.

10.1101/485599 — neuroscience — Posted on 2018-12-03

2476 Cell type-specific modulation of sensory and affective components of itch in the periaqueductal gray

Samineni, V. K.; Grajales-Reyes, J. G.; Sundaram, S. S.; Gereau, R. W.

10.1101/486332 — neuroscience — Posted on 2018-12-03

2477 Confidence as a priority signal

Aguilar-Lleyda, D.; Lemarchand, M.; de Gardelle, V.

10.1101/480350 — neuroscience — Posted on 2018-12-03

2478 Norepinephrine improves attentional orienting in a predictive context

Reynaud, A.; Froesel, M.; Guedj, C.; Ben Hadj Hassen, S.; Clery, J.; Meunier, M.; Ben Hamed, S.; Hadj-Bouziane, F.

10.1101/485813 — neuroscience — Posted on 2018-12-03

2479 The STROBE: a system for closed-looped optogenetic control of freely feeding flies

Musso, P.-Y.; Junca, P.; Jelen, M.; Feldman-Kiss, D.; Zhang, H.; Chan, R. C. W.; Gordon, M. D.

10.1101/486050 — neuroscience — Posted on 2018-12-03

2480 optoPAD: a closed-loop optogenetics system to study the circuit basis of feeding behaviors

Moreira, J.-M.; Itskov, P. M.; Goldschmidt, D.; Steck, K.; Walker, S. J.; Ribeiro, C.

10.1101/485110 — neuroscience — Posted on 2018-12-03

2481 An evolutionary compass for detecting signals of polygenic selection and mutational bias

Uricchio, L. H.; Kitano, H. C.; Gusev, A.; Zaitlen, N. A.

10.1101/173815 — evolutionary biology — Posted on 2018-12-03

2482 Fear Generalization as Threat Prediction: Adaptive Changes in Facial Exploration Strategies revealed by Fixation-Pattern Similarity Analysis

Kampermann, L.; Wilming, N.; Alink, A.; Buechel, C.; Onat, S.

10.1101/125682 — neuroscience — Posted on 2018-12-03

2483 Nonlinear processing of shape information in rat lateral extrastriate cortex

Matteucci, G.; Bellacosa Marotti, R.; Riggi, M.; Rosselli, F. B.; Zoccolan, D.

10.1101/341792 — neuroscience — Posted on 2018-12-03

2484 Differential responses of antioxidants and dehydrin expression in two switchgrass (Panicum virgatum) cultivars contrasting in drought tolerance

Liu, Y.; Hu, G.; Wu, G.; Huan, H.; Ding, X.; Yan, L.; Li, X.; Liu, P.; Bai, C.; Liu, G.; Zhao, B.; Zhang, X.

10.1101/486308 — plant biology — Posted on 2018-12-03

2485 Dengue and Chikungunya among Febrile Outpatients in Kinshasa, Democratic Republic of Congo: a cross-sectional study

Proesmans, S.; Katshongo, F.; Milambu, J.; Fungula, B.; Muhindo Mavoko, H.; Ahuka-Mundeke, S.; Inocencio da Luz, R.; Van Esbroeck, M.; Ariën, K. K.; Cnops, L.; De Smet, B.; Lutumba, P.; Van geertruyden, J.-P.; Vanlerberghe, V.

10.1101/486407 — microbiology — Posted on 2018-12-03

2486 Insights from Bacillus anthracis strains isolated from permafrost in the tundra zone of Russia

Timofeev, V.; Bakhteeva, I.; Mironova, R.; Titareva, G.; Lev, I.; Christiany, D.; Borzilov, A.; Bogun, A.; Vergnaud, G.

10.1101/486290 — microbiology — Posted on 2018-12-03

2487 Small molecule docking of DNA repair proteins associated with cancer survival following PCNA metagene adjustment: A potential novel class of repair inhibitors

Peterson, L.

10.1101/485375 — bioinformatics — Posted on 2018-12-03

2488 Visual mismatch negativity to disappearing parts of objects and textures

Gaal, Z. A.; Czigler, I.; Sulykos, I.; File, D.; Kojouharova, P.

10.1101/486191 — neuroscience — Posted on 2018-12-03

2489 Novitski’s Distal shift in Paracentric Inversion Evolution

Koury, S. A.

10.1101/485334 — evolutionary biology — Posted on 2018-12-03

2490 Evolution of host resistance and damage-limiting mechanisms to an emerging bacterial pathogen

Bonneaud, C.; Tardy, L.; Giraudeau, M.; Hill, G.; McGraw, K.; Wilson, A.

10.1101/486365 — evolutionary biology — Posted on 2018-12-03

2491 FtsZ assembles the bacterial cell division machinery by a diffusion-and-capture mechanism

Baranova, N.; Radler, P.; Hernandez-Rocamora, V. M.; Alfonso, C.; Lopez-Pelegrin, M.; Rivas, G.; Vollmer, W.; Loose, M.

10.1101/485656 — biochemistry — Posted on 2018-12-03

2492 Adaptations in the echolocation behavior of fruit-eating bats when orienting under challenging conditions

Beetz, M. J.; Kössl, M.; Hechavarria, J. C.

10.1101/485490 — animal behavior and cognition — Posted on 2018-12-03

2493 Effect of diets containing whole or ground corn with and without soybean hulls on feeding calves during the suckling phase

Santana, A. E. M.; Neiva, J. N. M.; Bozorg, V. L. d. A.; Restle, J.; Bilego, U.

10.1101/486258 — synthetic biology — Posted on 2018-12-03

2494 Computational framework for targeted high-coverage sequencing based NIPT

Teder, H.; Paluoja, P.; Salumets, A.; Krjutskov, K.; Palta, P.

10.1101/486282 — genomics — Posted on 2018-12-03

2495 Species-specific strategies increase unpredictability of escape flight in eared moths

Huegel, T.; Goerlitz, H. R.

10.1101/485698 — animal behavior and cognition — Posted on 2018-12-03

2496 Changes choroidal area following trabeculectomy: long-term effect of intraocular pressure reduction

Kojima, K.; Hirooka, K.; Sonoda, S.; Sakamoto, T.; Kiuchi, Y.

10.1101/486357 — pathology — Posted on 2018-12-03

2497 Mutational analysis of N-ethyl-N-nitrosourea (ENU) in the fission yeast Schizosaccharomyces pombe.

Hoyos-Manchado, R.; Jimenez, J.; A. Tallada, V.

10.1101/486266 — genetics — Posted on 2018-12-03

2498 Mass media promotion of a smartphone smoking cessation app: Modeled health and cost impacts

Nghiem, N.; Leung, W.; Cleghorn, C.; Blakely, T.; Wilson, N.

10.1101/486316 — epidemiology — Posted on 2018-12-03

2499 Structural venomics: evolution of a complex chemical arsenal by massive duplication and neofunctionalization of a single ancestral fold

Pineda, S. S.; Chin, Y. K.-Y.; Undheim, E. A. B.; Senff, S.; Mobli, M.; Dauly, C.; Escoubas, P.; Nicholson, G. M.; Kaas, Q.; Mattick, J. S.; King, G. F.

10.1101/485722 — biochemistry — Posted on 2018-12-03

2500 Replication dynamics of individual loci in single living cells reveal variation of stochasticity

Duriez, B.; Chilaka, S.; Bercher, J.-F.; Hercul, E.; Boggetto, N.; Prioleau, M.-N.

10.1101/485987 — molecular biology — Posted on 2018-12-03

2501 Reconstruction of Escherichia coli ancient diversification by layered phylogenomics and polymorphism fingerprinting

Gonzalez-Alba, J. M.; Baquero, F.; Canton, R.; Galan, J. C.

10.1101/486399 — microbiology — Posted on 2018-12-03

2502 Christmas disease in a Hovawart family resembling human hemophilia B Leyden is caused by a single nucleotide deletion in a highly conserved transcription factor binding site of the F9 gene promoter

Brenig, B.; Steingräber, L.; Shan, S.; Xu, F.; Hirschfeld, M.; Andag, R.; Spengeler, M.; Dietschi, E.; Mischke, R.; Leeb, T.

10.1101/486373 — genetics — Posted on 2018-12-03

2503 Climate and vegetation collectively drive soil respiration in montane forest-grassland landscapes of the southern Western Ghats, India

Joshi, A. A.; Ratnam, J.; Paramjyothi, H.; Sankaran, M.

10.1101/486324 — ecology — Posted on 2018-12-03

2504 C. elegans models of Marfan and Marfan-like Syndromes reveal trafficking defects of the type II TGFβ receptor as a potential novel disease mechanism

Lin, J.; Vora, M.; Kane, N. S.; Gleason, R. J.; Padgett, R. W.

10.1101/486381 — cancer biology — Posted on 2018-12-03

2505 Epigenetic mutational landscape in breast cancer: role of the histone methyltransferase gene KMT2D in triple negative tumors

Morcillo Garcia, S.; Noblejas Lopez, M. d. M.; Nieto Jimenez, C.; Perez Pena, J.; Nuncia Cantarero, M.; Györffy, B.; Amir, E.; Pandiella, A.; Galan Moya, E. M.; Ocana, A.

10.1101/486233 — cancer biology — Posted on 2018-12-03

2506 Which author is which? Gender Authorship Position in Aquaculture Literature

Chow, M.; Egna, H.; West, J.

10.1101/486209 — scientific communication and education — Posted on 2018-12-03

2507 Cerebral amyloid angiopathy and comparative analysis of amyloid-β protein in birds

Une, Y.; Yamazaki, M.; Morimoto, M.; Kametani, F.; Parker, D.; Karawita, A.; Scott, S. J.; Yamazaki, Morimoto, Kametani, Scott, Parker, Karawita, Une,

10.1101/486340 — pathology — Posted on 2018-12-03

2508 Wind drives drought responses of green roof vegetation in two substrates

Przybysz, A.; Sonkin, K.; Saebo, A.; Hanslin, H. M.; Konstantin Sonkin, Arne Saebo, Hans Martin Hanslin,

10.1101/486241 — ecology — Posted on 2018-12-03

2509 Cross-Lagged Panel Model in Medical Research: A Cautionary Note

Usami, S.; Todo, N.; Murayama, K.

10.1101/486217 — scientific communication and education — Posted on 2018-12-03

2510 Antimicrobial Resistance Surveillance Among Gram Negative Bacterial Isolates from Patients in Khartoum State Hospitals

Elbadawi, H. S.; Elhag, K. M.; Mahgoub, E.; Altayb, H. N.; Abdel Hamid, M. M.

10.1101/486274 — microbiology — Posted on 2018-12-03

2511 Construction of a genetic linkage map in Pyropia yezoensis (Bangiales, Rhodophyta) and QTL analysis of several economic traits of blades

huang, l.; Yan, X.-h.

10.1101/486175 — genetics — Posted on 2018-12-03

2512 Health seeking behaviour and cost of fever treatment to households in a malaria endemic setting of northern Ghana: A cross sectional study

Dalaba, M.; Akweongo, P.; Adongo, P. B.; Dalinjong, P. A.; Chatio, S.; Oduro, A.

10.1101/486183 — epidemiology — Posted on 2018-12-03

2513 Trends and projections of universal health coverage indicators in Ghana, 1995-2030: A national and subnational study

Zhang, C.; Rahman, M. S.; Rahman, M. M.; Yawson, A. E.; Shibuya, K.

10.1101/486159 — scientific communication and education — Posted on 2018-12-03

2514 The genome of the fungal pathogen Verticillium dahliae reveals extensive bacterial to fungal gene transfer

Shi, X.; van Koosten, M.; Depotter, J.; Thomma, B.; Seidl, M.

10.1101/485037 — microbiology — Posted on 2018-12-03

2515 Modulation of fear generalization by the zona incerta

Venkataraman, A.; Brody, N.; Reddi, P.; Guo, J.; Rainnie, D.; Dias, B. G.

10.1101/485250 — neuroscience — Posted on 2018-12-03

2516 PolyCRACKER, a robust method for the unsupervised partitioning of polyploid subgenomes by signatures of repetitive DNA evolution

Gordon, S. P.; Levy, J. J.; Vogel, J. P.

10.1101/484832 — genomics — Posted on 2018-12-03

2517 OCHROdb: a comprehensive, quality checked database of open chromatin regions from sequencing data

Shooshtari, P.; Feng, S.; Nelakuditi, V.; Foong, J.; Brudno, M.; Cotsapas, C.

10.1101/484840 — genomics — Posted on 2018-12-03

2518 Implementation of the Perfect Plasticity Approximation with biogeochemical compartments in R

Erickson, A.; Strigul, N.

10.1101/485128 — ecology — Posted on 2018-12-03

2519 DNA segment of African Swine Fever Virus first detected in hard ticks from sheep and bovine

Chen, Z.; Xu, X.; Yang, X.; Dou, W.; Jin, X.; Ji, H.; Liu, G.; Luo, J.; Yin, H.; Shan, G.

10.1101/485060 — zoology — Posted on 2018-12-03

2520 Dynamic landscape and genetic regulation of RNA editing in schizophrenia

Breen, M. S.; Dobbyn, A.; Li, Q.; Roussos, P.; Hoffman, G. E.; Stahl, E.; Chess, A.; Sklar, P.; Li, J. B.; Devlin, B.; Buxbaum, J. D.; CommonMind Consortium,

10.1101/485086 — neuroscience — Posted on 2018-12-03

2521 Ancient DNA from chewing gums connects material culture and genetics of Mesolithic hunter-gatherers in Scandinavia

Kashuba, N.; Kirdök, E.; Damlien, H.; Manninen, M. A.; Nordqvist, B.; Persson, P.; Götherström, A.

10.1101/485045 — genomics — Posted on 2018-12-03

2522 arcasHLA: high resolution HLA typing from RNA seq

Orenbuch, R.; Filip, I.; Comito, D.; Shaman, J.; Pe'er, I.; Rabadan, R.

10.1101/479824 — bioinformatics — Posted on 2018-12-03

2523 Beneficial effects of Spirogyra Neglecta Extract on antioxidant and anti-inflammatory factors in streptozotocin-induced diabetic rats

Mesbahzadeh, B.; Rajaei, S. A.; Tarahomi, P.; Seyedinia, S. A.; Rahmani, M.; Rezamohamadi, F.; Kakar, M. A.; Moradi-kor, N.

10.1101/485219 — pharmacology and toxicology — Posted on 2018-12-03

2524 Social spread of positive facial signals: affiliative zygomatic synchrony in co-present individuals

Golland, Y.; Mevorah, D.; Levit-Binnun, N.

10.1101/484980 — neuroscience — Posted on 2018-12-03

2525 New perspectives into the evolutionary pressures acting on the Human intrinsically disordered proteins

Forcelloni, S.; Giansanti, A.

10.1101/484659 — evolutionary biology — Posted on 2018-12-03

2526 Metabolic reprogramming dynamics in tumor spheroids: Insights from a multicellular, multiscale model

Roy, M.; Finley, S. D.

10.1101/485201 — systems biology — Posted on 2018-12-03

2527 SARM1 deficiency, which prevents Wallerian degeneration, upregulates XAF1 and accelerates prion disease

Zhu, C.; Li, B.; Frontzek, K.; Liu, Y.; Aguzzi, A.

10.1101/485052 — neuroscience — Posted on 2018-12-03

2528 A phosphate starvation response gene (psr1-like) is present and expressed in Micromonas pusilla and other marine algae

Fiore, C.; Alexander, H.; Kido Soule, M.; Kujawinski, E.

10.1101/484824 — microbiology — Posted on 2018-12-03

2529 Experimental evolution of independent genetic pathways for resistance to Pseudomonas aeruginosa pathogenicity within the nematode Caenorhabditis remanei

Archer, H.; Phillips, P. C.

10.1101/484998 — evolutionary biology — Posted on 2018-12-03

2530 Estimating statistical significance of local protein profile-profile alignments

Margelevicius, M.

10.1101/484485 — bioinformatics — Posted on 2018-12-03

2531 A field guide for the compositional analysis of any-omics data

Quinn, T. P.; Erb, I.; Gloor, G.; Notredame, C.; Richardson, M. F.; Crowley, T. M.

10.1101/484766 — bioinformatics — Posted on 2018-12-03

2532 Bilateral spontaneous otoacoustic emissions show coupling between active oscillators in the two ears

Roongthumskul, Y.; O Maoileidigh, D.; Hudspeth, A.

10.1101/484717 — neuroscience — Posted on 2018-12-03

2533 Modulation of interhemispheric alpha-band connectivity by transcranial alternating current stimulation

Schwab, B. C.; Misselhorn, J.; Engel, A. K.

10.1101/484014 — neuroscience — Posted on 2018-12-03

2534 Arabidopsis TRM5 encodes a nuclear-localised bifunctional tRNA guanine and inosine-N1-methyltransferase that is important for growth.

Guo, Q.; Ng, P.; Shi, S.; Fan, D.; Li, J.; Wang, H.; Do, T.; David, R.; Mittal, P.; Bock, R.; Zhao, M.; Zhou, W.; Searle, I. R.

10.1101/485516 — molecular biology — Posted on 2018-12-03

2535 Bayesian parameter estimation in non-stationary semiflexible polymers from ensembles of trajectories

Penfold, C. A.

10.1101/484691 — bioinformatics — Posted on 2018-12-03

2536 Tractography Reproducibility Challenge with Empirical Data (TraCED): The 2017 ISMRM Diffusion Study Group Challenge

Nath, V.; Schilling, K.; Parvathaneni, P.; Hainline, A. E.; Huo, Y.; Blaber, J. A.; Rowe, M.; Rodrigues, P.; Prckovska, V.; Aydogan, B.; Sun, W.; Shi, Y.; Parker, W.; Ismail, A. A. O.; Verma, R.; Cabeen, R. P.; Toga, A. W.; Newton, A. T.; Wasserthal, J.; Neher, P.; Maier-Hein, K. H.; Savini, G.; Palesi, F.; Kaden, E.; Wu, Y.; Feng, Y.; He, J.; Barakovic, M.; Romascano, D.; Rafael-Pinto, J.; Frigo, M.; Girard, G.; Daducci, A.; Thiran, J.-P.; Paquette, M.; Rheault, F. M.; Sidhu, J.; Lebel, C.; Leemans, A.; Descoteaux, M.; Dyrby, T.; Kang, H.; Landman, B. A.

10.1101/484543 — neuroscience — Posted on 2018-12-03

2537 ciftify: A framework for surface-based analysis of legacy MR acquisitions

Dickie, E. W.; Anticevic, A.; Smith, D. E.; Coalson, T. S.; Manogaran, M.; Calarco, N.; Viviano, J. D.; Glasser, M. F.; Van Essen, D. C.; Voineskos, A. N.

10.1101/484428 — neuroscience — Posted on 2018-12-03

2538 Linking the Resistome and Plasmidome to the Microbiome

Stalder, T.; Press, M. O.; Sullivan, S.; Liachko, I.; Top, E. M.

10.1101/484725 — microbiology — Posted on 2018-12-03

2539 The Olson conjecture for discrete public goods

Nöldeke, G.; Pena, J.

10.1101/483149 — evolutionary biology — Posted on 2018-12-03

2540 Structure and assembly of a Clostridioides difficile spore polar appendage

Antunes, W.; Pereira, F. C.; Feliciano, C.; Saujet, L.; Vultos, T. d.; Couture-Tosi, E.; Pechine, S.; Bruxelle, J.-F.; Janoir, C.; Melo, L.; Brito, P.; Martin-Verstraete, I.; Serrano, M.; Dupuy, B.; Henriques, A. O.

10.1101/468637 — microbiology — Posted on 2018-12-03

2541 Two Contrasting Classes of Nucleolus-Associated Domains in Mouse Fibroblast Heterochromatin

Vertii, A.; Ou, J.; Yu, J.; Yan, A.; Pages, H.; Liu, H.; Zhu, L. J.; Kaufman, P. D.

10.1101/484568 — genomics — Posted on 2018-12-03

2542 Extensive field-sampling reveals the uniqueness of a trophy mountain goat population

Breen, J.; Britt, M.; Johnson, J. B.; Martchenko, D.; Shakeri, Y.; Porter, B.; White, K. S.; Shafer, A.

10.1101/484592 — genetics — Posted on 2018-12-03

2543 Population dynamics of Cymodocea nodosa under future ocean scenarios.

Mishra, A. K.

10.1101/484634 — ecology — Posted on 2018-12-03

2544 Enhanced flux prediction by integrating relative expression and relative metabolite abundance into thermodynamically consistent metabolic models

Pandey, V.; Hadadi, N.; Hatzimanikatis, V.

10.1101/481499 — systems biology — Posted on 2018-12-03

2545 Engineering Brain Parasites for Intracellular Delivery of Therapeutic Proteins

Bracha, S.; Hassi, K.; Ross, P. D.; Cobb, S.; Sheiner, L.; Rechavi, O.

10.1101/481192 — synthetic biology — Posted on 2018-12-03

2546 Cardiac afferent activity modulates early neural signature of error detection during skilled performance

Bury, G.; Garcia Huescar, M.; Bhattacharya, J.; Herrojo Ruiz, M.

10.1101/484584 — neuroscience — Posted on 2018-12-03

2547 Discovery of Novel Glycerolated Quinazolinones from Streptomyces sp. MBT27

van Wezel, G. P.; Machushynets, N.; Wu, C.; Elsayed, S.; Hankemeier, T.

10.1101/484535 — microbiology — Posted on 2018-12-03

2548 Epigenetic derepression of FKBP5 by aging and stress contributes to NF-kB-driven inflammation and cardiovascular risk

Zannas, A. S.; Jia, M.; Hafner, K.; Baumert, J.; Wiechmann, T.; Pape, J.; Arloth, J.; Koedel, M.; Martinelli, S.; Roitman, M.; Roeh, S.; Haehle, A.; Emeny, R. T.; Iurato, S.; Carrillo-Roa, T.; Lahti, J.; Raikkoenen, K.; Eriksson, J.; Drake, A.; Waldenberger, M.; Wahl, S.; Kunze, S.; Lucae, S.; Bradley, B.; Gieger, C.; Hausch, F.; Smith, A. K.; Ressler, K. J.; Mueller-Myhsok, B.; Ladwig, K.-H.; Rein, T.; Gassen, N. C.; Binder, E. B.

10.1101/484709 — genomics — Posted on 2018-12-03

2549 Forest loss as a catalyst of population and biodiversity change

Daskalova, G. N.; Myers-Smith, I. H.; Bjorkman, A. D.; Blowes, S. A.; Supp, S. R.; Magurran, A.; Dornelas, M.

10.1101/473645 — ecology — Posted on 2018-12-03

2550 Rootstock effects on scion phenotypes in a ‘Chambourcin’ experimental vineyard

Migicovsky, Z.; Harris, Z. N.; Klein, L. L.; Li, M.; McDermaid, A.; Chitwood, D. H.; Fennell, A.; Kovacs, L. G.; Kwasniewski, M.; Londo, J. P.; Ma, Q.; Miller, A. J.

10.1101/484212 — plant biology — Posted on 2018-12-03

2551 Stress, novel sex genes and epigenetic reprogramming orchestrate socially-controlled sex change

Todd, E. V.; Ortega-Recalde, O.; Liu, H.; Lamm, M. S.; Rutherford, K. M.; Cross, H.; Black, M. A.; Kardailsky, O.; Graves, J. A.; Hore, T. A.; Godwin, J. R.; Gemmell, N. J.

10.1101/481143 — molecular biology — Posted on 2018-12-03

2552 Directionality and community-level selection

Bunin, G.

10.1101/484576 — ecology — Posted on 2018-12-03

2553 Exploring different sequence representations and classification methods for the prediction of nucleosome positioning

Kostagiolas, N.; Pittaras, N.; Nikolaou, C.; Giannakopoulos, G.

10.1101/482612 — bioinformatics — Posted on 2018-12-03

2554 Transcriptome and histone epigenome of Plasmodium vivax salivary-gland sporozoites point to tight regulatory control and potential mechanisms for liver-stage differentiation.

Jex, A.; Mueller, I.; Kappe, S.; Mikolajcjak, S.; Sattabongkot, J.; Patrapuvich, R.; Lindner, S.; Flannery, E.; Koepfli, C.; Ansell, B.; Lerch, A.; Swearingen, K. E.; Emery-Corbin, S. J.; Charnaud, S.; Smith, J.; Merrienne, N.; Moritz, R. L.; Petter, M.; Duffy, M.; Chuenchob, V.

10.1101/145250 — microbiology — Posted on 2018-12-03

2555 Host diet and evolutionary history explain different aspects of gut microbiome diversity among vertebrate clades

Youngblut, N. D.; Reischer, G. H.; Walters, W.; Schuster, N.; Walzer, C.; Stalder, G.; Ley, R. E.; Farnleitner, A. H.

10.1101/484006 — microbiology — Posted on 2018-12-03

2556 Main constraints for RNAi induced by expressed long dsRNA in mouse cells

Demeter, T.; Vaskovicova, M.; Malik, R.; Horvat, F.; Pasulka, J.; Svobodova, E.; Flemr, M.; Svoboda, P.

10.1101/485524 — molecular biology — Posted on 2018-12-03

2557 Genetic interactions among Ghd7, Ghd7.1, Ghd8 and Hd1 contribute to large variation in heading date in rice

Xing, Y.; Zhang, B.; Liu, H.; Qi, F.; Zhang, Z.; Li, Q.; Han, Z.

10.1101/485623 — genetics — Posted on 2018-12-03

2558 Decoding functional regulatory maps via genomic evolutionary footprints in 63 green plants

Tian, F.; Yang, D.-C.; Meng, Y.-Q.; Jin, J.; Gao, G.

10.1101/484493 — bioinformatics — Posted on 2018-12-03

2559 Arbuscular cotton-associated mycorrhizal fungi in Yeola region of Maharashtra, India

PATALE, S. W.

10.1101/485326 — plant biology — Posted on 2018-12-03

2560 Isolation of adipose tissue derived regenerative cells from human subcutaneous tissue with or without the use of an enzymatic reagent

Valenzuela, N.; Alt, C.; Winnier, G. E.; Alt, E. U.

10.1101/485318 — bioengineering — Posted on 2018-12-03

2561 An individual-based mechanical model of cell movement in heterogeneous tissues and its coarse-grained approximation

Murphy, R.; Buenzli, P.; Baker, r. E.; Simpson, M. J.

10.1101/485276 — biophysics — Posted on 2018-12-03

2562 Role of Physicochemical Properties of Protein in Modulating the Nanoparticle-Bio interface

Dhar, S.; Sood, V.; Lohiya, G.; Devenderan, H.; Katti, D.

10.1101/484972 — bioengineering — Posted on 2018-12-03

2563 Deciphering the molecular pathways of apoptosis using leaf extract of Basella alba against Ehrlichs Ascites Carcinoma (EAC) cell line in Swiss albino mice model

Islam, M. S.; Rahi, M. S.; Jahangir, C. A.; Hasan, M. M.; Sajib, S. A.; Haque, A.; Kabir, S. R.; Hoque, K. M. F.; Moni, M. A.; Reza, M. A.

10.1101/485078 — molecular biology — Posted on 2018-12-03

2564 Topoisomerase IIβ targets DNA crossovers formed between distant homologous sites to modulate chromatin structure and gene expression

Miyaji, M.; Furuta, R.; Hosoya, O.; Sano, K.; Hara, N.; Kuwano, R.; Kang, J.; Tateno, M.; Tsutsui, K. M.; Tsutsui, K.

10.1101/484956 — molecular biology — Posted on 2018-12-03

2565 Age-specific differences in the dynamics of protective immunity to influenza

Ranjeva, S.; Subramanian, R.; Fang, V. J.; Leung, G. M.; Ip, D. K. M.; Perera, R. A. P. M.; Peiris, J. S. M.; Cowling, B. J.; Cobey, S.

10.1101/330720 — epidemiology — Posted on 2018-12-02

2566 SMCR8 negatively regulates AKT and MTORC1 signaling to modulate lysosome biogenesis and tissue homeostasis

Lan, Y.; Sullivan, P. M.; Hu, F.

10.1101/485243 — cell biology — Posted on 2018-12-03

2567 Multidimensional analysis of Gammaherpesvirus RNA expression reveals unexpected heterogeneity of gene expression

Oko, L. M.; Kimball, A. K.; Kaspar, R. E.; Knox, A. N.; Chang, T.; Alderete, B.; van Dyk, L. F.; Clambey, E. T.

10.1101/482042 — microbiology — Posted on 2018-12-02

2568 Transverse chromatic offsets with pupil displacements in the human eye: Sources of variability and methods for real-time correction

Boehm, A. E.; Privitera, C. M.; Schmidt, B. P.; Roorda, A.

10.1101/484386 — neuroscience — Posted on 2018-12-02

2569 Early Visual Experience Shapes Binocularity in the Mouse Thalamocortical Pathway

Huh, C. Y. L.; Abdelaal, K.; Salinas, K. J.; Gu, D.; Zeitoun, J.; Figueroa Velez, D. X.; Peach, J. P.; Fowlkes, C. C.; Gandhi, S. P.

10.1101/484774 — neuroscience — Posted on 2018-12-02

2570 Medroxyprogesterone acetate mediated alteration in the vaginal microbiota and microenvironment in a Kenyan sex worker cohort

Wessels, J. M.; Lajoie, J.; Cooper, M. I. H.; Omollo, K.; Felker, A. M.; Vitali, D.; Dupont, H. A.; Nguyen, P. V.; Mueller, K.; Vahedi, F.; Kimani, J.; Oyugi, J.; Cheruiyot, J.; Mungai, J. N.; Deshiere, A.; Tremblay, M. J.; Mazzulli, T.; Stearns, J. C.; Ashkar, A. A.; Fowke, K. R.; Surette, M. G.; Kaushic, C.

10.1101/483180 — molecular biology — Posted on 2018-12-02

2571 A combined in silico, in vitro and clinical approach to characterise novel pathogenic missense variants in PRPF31 in retinitis pigmentosa

Wheway, G.; Nazlamova, L.; Meshad, N.; Hunt, S.; Jackson, N.; Churchill, A.

10.1101/480343 — genetics — Posted on 2018-12-02

2572 Ccube: A fast and robust method for estimating cancer cell fractions

Yuan, K.; Macintyre, G.; Liu, W.; PCAWG Evolution and Heterogeneity Working Group, ; Markowetz, F.

10.1101/484402 — bioinformatics — Posted on 2018-12-02

2573 GRIBCG: A software for selection of sgRNAs in the design of balancer chromosomes

Merritt, B. B.; Cheung, L. S.

10.1101/484360 — bioinformatics — Posted on 2018-12-02

2574 Transcriptional suppression from KMT2D loss disrupts cell cycle and hypoxic responses in neurodevelopmental models of Kabuki syndrome

Carosso, G. A.; Boukas, L.; Augustin, J. J.; Nguyen, H. N.; Winer, B. L.; Cannon, G. H.; Robertson, J. D.; Zhang, L.; Hansen, K. D.; Goff, L. A.; Bjornsson, H. T.

10.1101/484410 — neuroscience — Posted on 2018-12-02

2575 Characterizing smoking-induced transcriptional heterogeneity in the human bronchial epithelium at single-cell resolution

Duclos, G. E.; Teixeira, V. H.; Autissier, P.; Gesthalter, Y. B.; Reinders-Luinge, M. A.; Terrano, R.; Dumas, Y. M.; Liu, G.; Mazzilli, S. A.; Brandsma, C.-A.; van den Berge, M.; Janes, S. M.; Timens, W.; Lenburg, M. E.; Spira, A.; Campbell, J. D.; Beane, J.

10.1101/484394 — genomics — Posted on 2018-12-02

2576 The finite state projection based Fisher information matrix approach to estimate information and optimize single-cell experiments

Fox, Z. R.; Munsky, B.

10.1101/370205 — systems biology — Posted on 2018-12-02

2577 Recurrent gene amplification on Drosophila Y chromosomes suggests cryptic sex chromosome drive is common on young sex chromosomes

Bachtrog, D.; Ellison, C.

10.1101/324368 — genomics — Posted on 2018-12-02

2578 Neuroblast-specific chromatin landscapes allow integration of spatial and temporal cues to generate neuronal diversity in Drosophila

Doe, C. Q.; Sen, S.; Chanchani, S.; Southall, T.

10.1101/485193 — developmental biology — Posted on 2018-12-02

2579 Speeding up anterior-posterior patterning of insects by differential initialization of the gap gene cascade

Rudolf, H.; Zellner, C.; El-Sherif, E.

10.1101/485151 — developmental biology — Posted on 2018-12-02

2580 Temporal identity establishes columnar neuron morphology, connectivity, and function in a Drosophila navigation circuit

Doe, C. Q.; Sullivan, L. F.; Warren, T. L.

10.1101/485185 — developmental biology — Posted on 2018-12-02

2581 Single-cell Transcriptomics reveals multi-step adaptations to endocrine therapy

Hong, S. P.; Chan, T. E.; Lombardo, Y.; Corleone, G.; Rotmensz, N.; Pruneri, G.; McEwen, K. R.; Coombes, C. R.; Barozzi, I.; Magnani, L.

10.1101/485136 — cancer biology — Posted on 2018-12-02

2582 Protein stability engineering insights revealed by domain-wide comprehensive mutagenesis

Nisthal, A.; Wang, C. Y.; Ary, M. L.; Mayo, S. L.

10.1101/484949 — biochemistry — Posted on 2018-12-02

2583 UNC-16/JIP3 inhibits the function of the regeneration promoting isoform of DLK-1

Kulkarni, S. S.; Sheoran, S.; Matsumoto, K.; Hisamoto, N.; Koushika, S. P.

10.1101/484683 — neuroscience — Posted on 2018-12-02

2584 PCIF1 catalyzes m6Am mRNA methylation to regulate gene expression

Sendinc, E.; Valle-Garcia, D.; Dhall, A.; Chen, H.; Henriques, T.; Sheng, W.; Adelman, K.; Shi, Y.

10.1101/484931 — molecular biology — Posted on 2018-12-02

2585 Longitudinal dissection in brain organoids at single cell resolution uncovers the developmental role of GSK3 in human corticogenesis

Lopez Tobon, A.; Villa, C. E.; Cheroni, C.; Trattaro, S.; Caporale, N.; Conforti, P.; Iennaco, R.; Lachgar, M.; Rigoli, M. T.; Marco de la Cruz, B.; Lo Riso, P.; Tenderini, E.; Troglio, F.; de Simone, M.; Liste, I.; Piccolo, S.; Macino, G.; Pagani, M.; Cattaneo, E.; Testa, G.

10.1101/484741 — developmental biology — Posted on 2018-12-02

2586 Dynamic urinary proteomic analysis in a Walker 256 intracerebral tumor model

Zhang, L.; Li, Y.; Meng, W.; Ni, Y.; Gao, Y.

10.1101/481697 — cancer biology — Posted on 2018-12-02

2587 A cross-cancer metastasis signature in the microRNA-mRNA axis of paired tissue samples

Lee, S. C.; Quinn, A.; Nguyen, T.; Venkatesh, S.; Quinn, T. P.

10.1101/484816 — cancer biology — Posted on 2018-12-02

2588 MAU2 and NIPBL variants in Cornelia de Lange syndrome reveal MAU2-independent loading of cohesin and uncover a protective mechanism against early truncating mutations in NIPBL

Parenti, I.; Diab, F.; Ruiz Gil, S.; Mulugeta, E.; Casa, V.; Berutti, R.; Brouwer, R. W. W.; Dupe, V.; Eckhold, J.; Graf, E.; Puisac, B.; Ramos, F.; Schwarzmayr, T.; van Staveren, T.; van IJcken, W. F. J.; Strom, T. M.; Pie, J.; Watrin, E.; Kaiser, F. J.; Wendt, K. S.

10.1101/477752 — molecular biology — Posted on 2018-12-02

2589 Neutrophil Elastase Activates Macrophage MMPs, Promotes Cell Adhesion And Cytokine Production Via Integrin-Src Kinases Pathway

Krotova, K.; Khodayari, N.; Oshins, R.; Aslanidi, G.; Brantly, M.

10.1101/474395 — cell biology — Posted on 2018-12-02

2590 Towards best-practice approaches for CRISPR/Cas9 gene engineering

Van Campenhout, C.; Cabochette, P.; Veillard, A.-C.; Laczik, M.; Zelisko-Schmidt, A.; Sabatel, C.; Dhainaut, M.; Vanhollebeke, B.; Gueydan, C.; Kruys, V.

10.1101/469544 — molecular biology — Posted on 2018-12-02

2591 CNApp: a web-based tool for integrative analysis of genomic copy number alterations in cancer

Franch-Exposito, S.; Bassaganyas, L.; Vila-Casadesus, M.; Hernandez-Illan, E.; Esteban-Fabro, R.; Diaz-Gay, M.; Lozano, J. J.; Castells, A.; Llovet, J. M.; Castellvi-Bel, S.; Camps, J.

10.1101/479667 — genomics — Posted on 2018-12-02

2592 A forest biogeochemistry model intercomparison on the East Coast of the United States

Erickson, A.; Strigul, N.

10.1101/464578 — ecology — Posted on 2018-12-02

2593 Defining developmental diversification of diencephalon neurons through single-cell gene expression profiling

Guo, Q.; Li, J. Y. H.

10.1101/481317 — developmental biology — Posted on 2018-12-02

2594 Genome-wide analyses supported by RNA-Seq reveal non-canonical splice sites in plant genomes

Pucker, B.; Brockington, S. F.

10.1101/428318 — genomics — Posted on 2018-12-02

2595 Dual RNA-seq reveals large-scale non-conserved genotype x genotype specific genetic reprograming and molecular crosstalk in the mycorrhizal symbiosis

Mateus, I. D.; Masclaux, F. G.; Aletti, C.; Rojas, E. C.; Savary, R.; Dupuis, C.; Sanders, I. R.

10.1101/393637 — plant biology — Posted on 2018-12-02

2596 Intact mast cell content during mild head injury is required for the development of latent pain sensitization - implications for mechanisms underlying post-traumatic headache

Bree, D.; Levy, D.

10.1101/392928 — neuroscience — Posted on 2018-12-02

2597 Transcriptome and histone epigenome of Plasmodium vivax salivary-gland sporozoites point to tight regulatory control and potential mechanisms for liver-stage differentiation.

10.1101/145250 — microbiology — Posted on 2018-12-02

2598 Prospective randomized controlled study directly comparing tadalafil and tamsulosin for male patients with lower urinary tract symptoms.

Takeuchi, T.; Toyokawa, S.; Okuno, Y.; Ishida, N.; Yamagoe, M.; Zaitsu, M.; Mikami, K.

10.1101/404566 — clinical trials — Posted on 2018-12-02

2599 Manifold-tiling Localized Receptive Fields are Optimal in Similarity-preserving Neural Networks

Sengupta, A.; Tepper, M.; Pehlevan, C.; Genkin, A.; Chklovskii, D.

10.1101/338947 — neuroscience — Posted on 2018-12-02

2600 Venoms of related mammal-eating species of taipans (Oxyuranus) and brown snakes (Pseudonaja) differ in composition of toxins involved in mammal poisoning

Skejic, J.; Steer, D. L.; Dunstan, N.; Hodgson, W. C.

10.1101/378141 — evolutionary biology — Posted on 2018-12-02

2601 Loss of YAP/TAZ impaired the proliferation and differentiation ability of neural progenitor cells

Kong, S.; Cao, X.

10.1101/296053 — neuroscience — Posted on 2018-12-02

2602 Characterizing Subpopulations with Better Response to Treatment Using Observational Data - an Epilepsy Case Study

Ozery-Flato, M.; El-Hay, T.; Aharonov, R.; Parush-Shear-Yashuv, N.; Goldschmidt, Y.; Borghs, S.; Chan, J.; Haddad, N.; Pierre-Louis, B.; Kalilani, L.

10.1101/290585 — epidemiology — Posted on 2018-12-02

2603 Genetic Effects of Welding Fumes on the Development ofRespiratory System Diseases

Rana, H. K.; Akhtar, M. R.; Islam, M. B.; Lio, P.; Huq, F.; Moni, M. A.

10.1101/480855 — bioinformatics — Posted on 2018-12-02

2604 Genetic Effects of Welding Fumes on the Progression ofNeurodegenerative Diseases

Rana, H. K.; Akhtar, M. R.; Ahmed, M. B.; Lio, P.; Quinn, J.; Huq, F.; Moni, M. A.

10.1101/480806 — bioinformatics — Posted on 2018-12-02

2605 Blood-based molecular biomarker signatures in Alzheimer’s disease: Insights from systems biomedicine perspective

Rahman, M. R.; Islam, T.; Zaman, T.; Shahjaman, M.; Karim, M. R.; Holsinger, D.; Moni, M. A.

10.1101/481879 — systems biology — Posted on 2018-12-01

2606 Modified TCA/acetone precipitation of plant proteins for proteomic analysis

Niu, L.; Zhang, H.; Wu, Z.; Liu, H.; Wu, X.; Wang, W.

10.1101/382317 — biochemistry — Posted on 2018-12-01

2607 Identification of human genetic variants controlling circular RNA expression

Ahmed, I.; Karedath, T.; Al-Dasim, F. M.; Malek, J. A.

10.1101/472977 — genomics — Posted on 2018-12-01

2608 Miniaturization technologies for cost effective AmpliSeq library preparation for next generation sequencing

Ogiso-Tanaka, E.; Kaga, A.; Hajika, M.

10.1101/467464 — genomics — Posted on 2018-12-01

2609 Parallel Distributed Networks Resolved at High Resolution Reveal Close Juxtaposition of Distinct Regions

Braga, R. M.; Van Dijk, K. R. A.; Polimeni, J. R.; Eldaief, M. C.; Buckner, R. L.

10.1101/475806 — neuroscience — Posted on 2018-12-01

2610 Discovery and validation of candidate smoltification gene expression biomarkers across multiple species and ecotypes of Pacific salmonids

Houde, A. L. S.; Günther, O. P.; Strohm, J.; Ming, T. J.; Li, S.; Patterson, D. A.; Farrell, A. P.; Hinch, S. G.; Miller, K. M.

10.1101/474692 — genomics — Posted on 2018-12-01

2611 Generative adversarial network (GAN) enabled on-chip contact microscopy

Chen, X.; Zhang, H.; Zhu, T.; Yao, Y.; Jin, D.; Fei, P.

10.1101/478982 — biophysics — Posted on 2018-12-01

2612 Strong preference for autaptic self-connectivity of neocortical PV interneurons entrains them to γ-oscillations

Deleuze, C.; Bhumbra, G. S.; Pazienti, A.; Mailhes, C.; Aguirre, A.; Beato, M.; Bacci, A.

10.1101/477554 — neuroscience — Posted on 2018-12-01

2613 Novel genes for autism implicate both excitatory and inhibitory cell lineages in risk

Satterstrom, F. K.; Kosmicki, J. A.; Wang, J.; Breen, M. S.; De Rubeis, S.; An, J.-Y.; Peng, M.; Collins, R. L.; Grove, J.; Klei, L.; Stevens, C.; Reichert, J.; Mulhern, M.; Artomov, M.; Gerges, S.; Sheppard, B.; Xu, X.; Bhaduri, A.; Norman, U.; Brand, H.; Schwartz, G.; Nguyen, R.; Guerrero, E.; Dias, C.; Aleksic, B.; Anney, R. J.; Barbosa, M.; Bishop, S.; Brusco, A.; Bybjerg-Grauholm, J.; Carracedo, A.; Chan, M. C. Y.; Chiocchetti, A.; Chung, B.; Coon, H.; Cuccaro, M.; Curro, A.; Dalla Bernardina, B.; Doan, R.; Domenici, E.; Dong, S.; Fallerini, C.; Fernandez-Prieto, M.; Ferrero, G. B.; Freit

10.1101/484113 — genetics — Posted on 2018-12-01

2614 Cingulate dependent social risk assessment in rats

Han, Y.; Bruls, R.; Thomas, R. M.; Pentaraki, V.; Jelinek, N.; Heinemans, M.; Bassez, I.; Verschooren, S.; Pruis, I.; van Lierde, T.; Carrillo, N.; Gazzola, V.; Carrillo, M.; Keysers, C.

10.1101/452169 — neuroscience — Posted on 2018-12-01

2615 A splice donor variant in CCDC189 is associated with asthenospermia in Nordic Red dairy cattle

Iso-Touru, T.; Wurmser, C.; Venhoranta, H.; Hiltpold, M.; Savolainen, T.; Sironen, A.; Fischer, K.; Flisikowski, K.; Fries, R.; Vicente-Carrillo, A.; Alvarez-Rodriguez, M.; Nagy, S.; Mutikainen, M.; Peippo, J.; Taponen, J.; Sahana, G.; Guldbrandtsen, B.; Simonen, H.; Rodriguez-Martinez, H.; Andersson, M.; Pausch, H.

10.1101/472282 — genomics — Posted on 2018-12-01

2616 Miniaturized Permeability Assay for CRISPR-Mediated Genome-Wide Screens

Simonneau, C.; Yang, J.; Kong, X.; Kilker, R.; Edelstein, L.; Fortina, P.; Londin, E.; Horowitz, A.

10.1101/471854 — cell biology — Posted on 2018-12-01

2617 Lineage tracing on transcriptional landscapes links state to fate during differentiation

Weinreb, C.; Rodriguez-Fraticelli, A. E.; Camargo, F. D.; Klein, A. M.

10.1101/467886 — systems biology — Posted on 2018-12-01

2618 Human online adaptation to changes in prior probability

Norton, E. H.; Acerbi, L.; Ma, W. J.; Landy, M. S.

10.1101/483842 — neuroscience — Posted on 2018-12-01

2619 Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing mouse spinal cord

Delile, J.; Rayon, T.; Melchionda, M.; Edwards, A.; Briscoe, J.; Sagner, A.

10.1101/472415 — developmental biology — Posted on 2018-12-01

2620 Universal architectural concepts underlying protein folding patterns

Lesk, A.; Subramanian, R.; Allison, L.; Abramson, D.; Stuckey, P.; Garcia de la Banda, M.; Konagurthu, A.

10.1101/480194 — bioinformatics — Posted on 2018-12-01

2621 Excitatory GABAergic signalling is associated with acquired benzodiazepine resistance in status epilepticus

Burman, R. J.; Calin, A.; Codadu, N. K.; Wright, R.; Newey, S. E.; van den Berg, M.; Lee, J. H.; Parish, R. R.; Wilmshurst, J. M.; Akerman, C. J.; Trevelyan, A. J.; Raimondo, J. V.

10.1101/478594 — neuroscience — Posted on 2018-12-01

2622 APOE4 is Associated with Differential Regional Vulnerability to Bioenergetic Deficits in Aged APOE Mice

Nuriel, T.; Larrea, D.; Guilfoyle, D. N.; Pirhaji, L.; Shannon, K.; Arain, H.; Ashok, A.; Pera, M.; Chen, Q.; Dillman, A. A.; Figueroa, H. Y.; Cookson, M. R.; Gross, S. S.; Fraenkel, E.; Duff, K. E.; Area-Gomez, E.

10.1101/482422 — neuroscience — Posted on 2018-12-01

2623 A Hybrid Model for the Effects of Treatment and Demography on Malaria Superinfection

Henry, J. M.

10.1101/476523 — epidemiology — Posted on 2018-12-01

2624 Genomic changes underlying host specialization in the bee gut symbiont Lactobacillus Firm5

Ellegaard, K. M.; Brochet, S.; Bonilla-Rosso, G.; Emery, O.; Glover, N.; Hadadi, N.; Jaron, K. S.; van der Meer, J. R.; Robinson-Rechavi, M.; Sentchilo, V.; Tagini, F.; SAGE class 2016-17, ; Engel, P.

10.1101/483685 — microbiology — Posted on 2018-12-01

2625 A proactive genotype-to-patient-phenotype map for cystathionine beta-synthase

Sun, S.; Weile, J.; Verby, M.; Cote, A. G.; Wu, Y.; Fotiadou, I.; Kitaygorodsky, J.; Rine, J.; Jesina, P.; Kozich, V.; Roth, F. P.

10.1101/473983 — genetics — Posted on 2018-12-01

2626 A forest biogeochemistry model intercomparison on the East Coast of the United States

Erickson, A.; Strigul, N.

10.1101/464578 — ecology — Posted on 2018-12-01

2627 Bayesian inference of neuronal ensembles

Diana, G.; Sainsbury, t. T. J.; Meyer, M. P.

10.1101/452557 — neuroscience — Posted on 2018-12-01

2628 Human Lung Epithelial Cells Divide >200 Population Doublings without Engaging a Telomere Maintenance Mechanism

Shay, J. W.; Peters-Hall, J. R.; Min, J.; Tedone, E.; Sho, S.; Siteni, S.; Mender, I.

10.1101/474270 — cell biology — Posted on 2018-12-01

2629 The WT1-BASP1 complex is required to maintain the differentiated state of taste receptor cells

Gao, Y.; Dutta Banik, D.; Roberts, S.; Medler, K.

10.1101/460816 — cell biology — Posted on 2018-12-01

2630 Sudden heart rate reduction upon optogenetic release of acetylcholine from cardiac parasympathetic neurons in perfused hearts

Moreno, A.; Endicott, K.; Skancke, M.; Dwyer, M. K.; Brennan, J.; Efimov, I.; Trachiotis, G.; Mendelowitz, D.; Kay, M.

10.1101/451450 — physiology — Posted on 2018-12-01

2631 Signature patterns for top-down and bottom-up information processing via cross-frequency coupling in macaque auditory cortex

Marton, C. D.; Fukushima, M.; Camalier, C. R.; Schultz, S. R.; Averbeck, B. B.

10.1101/403980 — neuroscience — Posted on 2018-12-01

2632 Emotional Mirrors in the Rat’s Anterior Cingulate Cortex

Carrillo, M.; Han, Y.; Migliorati, F.; Liu, M.; Gazzola, V.; Keysers, C.

10.1101/450643 — neuroscience — Posted on 2018-12-01

2633 The Network of Cancer Genes (NCG): a comprehensive catalogue of known and candidate cancer genes from cancer sequencing screens.

Repana, D.; Nulsen, J.; Dressler, L.; Bortolomeazzi, M.; Kuppili Venkata, S.; Tourna, A.; Yakovleva, A.; Palmieri, T.; Ciccarelli, F. D.

10.1101/389858 — cancer biology — Posted on 2018-12-01

2634 Quantification of differential transcription factor activity and multiomics-based classification into activators and repressors: diffTF

Berest, I.; Arnold, C.; Reyes-Palomares, A.; Palla, G.; Rasmussen, K. D.; Helin, K.; Zaugg, J.

10.1101/368498 — bioinformatics — Posted on 2018-12-01

2635 Quantifying the potential for future gene therapy to lower lifetime risk of polygenic late-onset diseases

Oliynyk, R. T.

10.1101/390773 — genomics — Posted on 2018-12-01

2636 Cell size heterogeneity early in development is required for collective cell migration during gastrulation in zebrafish

Menon, T.; Kumar, R.; Nair, S.

10.1101/481325 — developmental biology — Posted on 2018-12-01

2637 In silico prediction and characterisation of secondary metabolite clusters in the plant pathogenic fungus Verticillium dahliae

Shi, X.; Pedro de Jove, R.; Depotter, J.; Ebert, M.; Seidl, M.; Thomma, B.

10.1101/481648 — microbiology — Posted on 2018-12-01

2638 VAMP8 contributes to TRIM6-mediated type-I interferon antiviral response during West Nile virus infection

Atkins, C.; Van Tol, S.; Bharaj, P.; Rajsbaum, R.; Freiberg, A. N.

10.1101/484469 — immunology — Posted on 2018-12-01

2639 Loss of Adenomatous polyposis coli function renders intestinal epithelial cells resistant to the cytokine IL-22

Chen, Y.; Newton, I. P.; Vandereyken, M.; Moraga, I.; Nathke, I.; Swamy, M.

10.1101/479972 — immunology — Posted on 2018-12-01

2640 ESCRT-III accumulates in micronuclei with ruptured nuclear envelopes

Willan, J.; Cleasby, A.; Flores-Rodriguez, N.; Stefani, F.; Rinaldo, C.; Pisciottani, A.; Grant, E.; Woodman, P.; Bryant, H.; Ciani, B.

10.1101/476630 — cancer biology — Posted on 2018-12-01

2641 A toolbox of IgG subclass-switched recombinant monoclonal antibodies for enhanced multiplex immunolabeling of brain

Andrews, N. P.; Boeckman, J. X.; Manning, C.; Nguyen, J. T.; Bechtold, H.; Dumitras, C.; Gong, B.; Nguyen, K.; van der List, D.; Murray, K. D.; Engebrecht, J.; Trimmer, J.

10.1101/483537 — neuroscience — Posted on 2018-12-01

2642 Human sperm chromatin forms spatially restricted nucleosome domains consistent with programmed nucleosome positioning

Huang, W.-H.; Zhang, M.-Z.; Cao, X.-M.; Xu, F.-Q.; Liang, X.-W.; Fu, L.-L.; Sun, F.-Z.; Huang, X.-Y.

10.1101/481028 — cell biology — Posted on 2018-12-01

2643 Polymorphism-aware species trees with advanced mutation models, bootstrap and rate heterogeneity

Schrempf, D.; Minh, B. Q.; von Haeseler, A.; Kosiol, C.

10.1101/483479 — bioinformatics — Posted on 2018-12-01

2644 Prediction Interval Ranking Score: Identification of Invariant Expression from Time Series

Crowell, A. M.; Loros, J. J.; Dunlap, J. C.

10.1101/482794 — bioinformatics — Posted on 2018-12-01

2645 Multidimensional analysis of Gammaherpesvirus RNA expression reveals unexpected heterogeneity of gene expression

Oko, L. M.; Kimball, A. K.; Kaspar, R. E.; Knox, A. K.; Chang, T.; Alderete, B.; van Dyk, L. F.; Clambey, E. T.

10.1101/482042 — microbiology — Posted on 2018-12-01

2646 Alternative Promoters Drive Human Cytomegalovirus Reactivation from Latency

Collins-McMillen, D.; Rak, M.; Buehler, J.; Igarashi-Hayes, S.; Kamil, J. P.; Moorman, N.; Goodrum, F. D.

10.1101/484436 — microbiology — Posted on 2018-12-01

2647 A gene expression atlas of embryonic neurogenesis in Drosophila reveals complex spatiotemporal regulation of lncRNAs.

McCorkindale, A. L.; Wahle, P.; Werner, S.; Jungreis, I.; Menzel, P.; Shukla, C. J.; Lopes Pereira Abreu, R.; Irizarry, R.; Meyer, I.; Kellis, M.; Rinn, J. L.; Zinzen, R. P.

10.1101/483461 — developmental biology — Posted on 2018-12-01

2648 Generalizing clusters of similar species as a signature of coexistence under competition

D'Andrea, R.; Riolo, M.; Ostling, A. M.

10.1101/264606 — ecology — Posted on 2018-12-01

2649 Thrombocyte inhibition restores protective immunity to mycobacterial infection

Hortle, E.; Johnson, K. E.; Johansen, M. D.; Nguyen, T.; Shavit, J. A.; Britton, W. J.; Tobin, D. M.; Oehlers, S. H.

10.1101/338111 — immunology — Posted on 2018-12-01

Oliynyk, R. T.

10.1101/349019 — genomics — Posted on 2018-12-01

2651 Super-resolution fight club: A broad assessment of 2D & 3D single-molecule localization microscopy software

Sage, D.; Pham, T.-A.; Babcock, H.; Lukes, T.; Pengo, T.; Chao, J.; Velmurugan, R.; Herbert, A.; Agrawal, A.; Colabrese, S.; Wheeler, A.; Archetti, A.; Rieger, B.; Ober, R.; Hagen, G. M.; Sibarita, J.-B.; Ries, J.; Henriques, R.; Unser, M.; Holden, S.

10.1101/362517 — biophysics — Posted on 2018-12-01

2652 The cell wall regulates dynamics and size of plasma-membrane nanodomains in Arabidopsis.

McKenna, J. F.; Rolfe, D.; Webb, S. E. D.; Tolmie, A. F.; Botchway, S. W.; Martin-Fernandez, M.; Hawes, C.; Runions, J.

10.1101/455782 — cell biology — Posted on 2018-12-01

2653 Adjunct phage treatment enhances the effectiveness of low antibiotic concentration against Staphylococcus aureus biofilms in vitro

Dickey, J. M.; Perrot, V.

10.1101/358879 — microbiology — Posted on 2018-12-01

2654 Large-scale neuroimaging and genetic study reveals genetic architecture of brain white matter microstructure

Zhao, B.; Zhang, J.; Ibrahim, J.; Santelli, R.; Li, Y.; Li, T.; Shan, Y.; Zhu, Z.; Zhou, F.; Liao, H.; Nichols, T.; Zhu, H.

10.1101/288555 — genetics — Posted on 2018-12-01

2655 Super-resolution fight club: A broad assessment of 2D & 3D single-molecule localization microscopy software

10.1101/362517 — biophysics — Posted on 2018-12-01

2656 Quantitative firing pattern phenotyping of hippocampal neuron types

Komendantov, A. O.; Venkadesh, S.; Rees, C. L.; Wheeler, D. W.; Hamilton, D. J.; Ascoli, G. A.

10.1101/212084 — neuroscience — Posted on 2018-12-01

2657 Imaging human cortical responses to intraneural microstimulation using magnetoencephalography

O'Neill, G. C.; Watkins, R. H.; Ackerley, R.; Barratt, E. L.; Sengupta, A.; Asghar, M.; Sanchez, R. M.; Brookes, M. J.; Glover, P. M.; Wessberg, J.; Francis, S.

10.1101/427815 — neuroscience — Posted on 2018-12-01

2658 Stimulus domain transfer in recurrent models for large scale cortical population prediction on video

Sinz, F. H.; Ecker, A. S.; Fahey, P. G.; Walker, E. Y.; Cobos, E.; Froudarakis, E.; Yatsenko, D.; Pitkow, X.; Reimer, J.; Tolias, A. S.

10.1101/452672 — neuroscience — Posted on 2018-12-01

2659 Evidence against tetrapod-wide digit identities and for a limited frame shift in bird wings

Stewart, T. A.; Liang, C.; Cotney, J.; Noonan, J. P.; Sanger, T.; Wagner, G.

10.1101/224147 — evolutionary biology — Posted on 2018-12-01

Archive, 2018-12